##fileformat=VCFv4.2 ##fileDate=20201018 ##source=freeBayes v1.3.1-dirty ##reference=reference.fasta ##contig= ##phasing=none ##INFO= ##INFO= ##INFO= ##INFO= ##INFO= ##INFO= ##INFO= ##INFO= ##INFO= ##INFO= ##INFO= ##INFO= ##INFO= ##INFO= ##INFO= ##INFO= ##INFO= ##INFO= ##INFO= ##INFO= ##INFO= ##INFO= ##INFO= ##INFO= ##INFO= ##INFO= ##INFO= ##INFO= ##INFO= ##INFO= ##INFO= ##INFO= ##INFO= ##INFO= ##INFO= ##INFO= ##INFO= ##INFO= ##INFO= ##INFO= ##INFO= ##INFO= ##INFO= ##INFO= ##FORMAT= ##FORMAT= ##FORMAT= ##FORMAT= ##FORMAT= ##FORMAT= ##FORMAT= ##FORMAT= ##FORMAT= ##FORMAT= #CHROM POS ID REF ALT QUAL FILTER INFO FORMAT AchmilV01_P AchmilV34_P AchmilV45_P dDocent_Contig_2 178 . C A 798.624 . AB=0.516129;ABP=3.15039;AC=3;AF=0.5;AN=6;AO=32;CIGAR=1X;DP=62;DPB=62;DPRA=0;EPP=72.4974;EPPR=68.1545;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=1145;QR=1198;RO=30;RPL=32;RPP=72.4974;RPPR=68.1545;RPR=0;RUN=1;SAF=0;SAP=72.4974;SAR=32;SRF=0;SRP=68.1545;SRR=30;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:29:15,14:15:597:14:498:-36.4181,0,-45.3378 0/1:8:2,6:2:81:6:199:-15.8273,0,-5.27749 0/1:25:13,12:13:520:12:448:-33.1398,0,-39.6185 dDocent_Contig_3 9 . T A 85.6852 . AB=0.130435;ABP=84.8654;AC=1;AF=0.166667;AN=6;AO=9;CIGAR=1X;DP=114;DPB=114;DPRA=3.06667;EPP=22.5536;EPPR=231.015;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=339;QR=4035;RO=105;RPL=0;RPP=22.5536;RPPR=231.015;RPR=9;RUN=1;SAF=9;SAP=22.5536;SAR=0;SRF=105;SRP=231.015;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:69:60,9:60:2321:9:339:-10.0914,0,-188.329 0/0:19:19,0:19:715:0:0:0,-5.71957,-64.678 0/0:26:26,0:26:999:0:0:0,-7.82678,-90.2204 dDocent_Contig_4 12 . T G 33.5474 . AB=0.113208;ABP=71.8828;AC=2;AF=0.333333;AN=6;AO=13;CIGAR=1X;DP=166;DPB=166;DPRA=0;EPP=31.2394;EPPR=335.246;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=6.93889e-18;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=508;QR=6199;RO=153;RPL=0;RPP=31.2394;RPPR=335.246;RPR=13;RUN=1;SAF=13;SAP=31.2394;SAR=0;SRF=153;SRP=335.246;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:113:106,7:106:4294:7:270:0,-9.35463,-361.721 0/1:10:9,1:9:360:1:41:-1.08427,0,-29.752 0/1:43:38,5:38:1545:5:197:-5.16123,0,-126.338 dDocent_Contig_6 161 . C A 1063.92 . AB=0.208145;ABP=166.519;AC=4;AF=0.666667;AN=6;AO=46;CIGAR=8M1X3M;DP=221;DPB=213.333;DPRA=0;EPP=102.898;EPPR=287.473;GTI=0;LEN=1;MEANALT=4.33333;MQM=60;MQMR=60;NS=3;NUMALT=3;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=1835;QR=5089;RO=131;RPL=46;RPP=102.898;RPPR=287.473;RPR=0;RUN=1;SAF=0;SAP=102.898;SAR=46;SRF=0;SRP=287.473;SRR=131;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|1:120:76,18,4,21:76:2932:18,4,21:696,139,845:-46.7691,-12.4811,-247.812,-58.3525,-241.933,-297.897,0,-183.59,-229.462,-234.438 1|1:38:11,11,3,12:11:427:11,3,12:428,117,474:-35.7878,-3.92087,-35.6968,-29.4813,-29.3902,-63.6641,-0.0913432,0,-25.5625,-31.5685 0|1:63:44,2,2,13:44:1730:2,2,13:74,74,516:-29.2537,-36.447,-178.152,-36.447,-172.701,-178.152,0,-136.277,-136.277,-138.417 dDocent_Contig_7 17 . T A 1596.67 . AB=0.383117;ABP=21.2845;AC=3;AF=0.5;AN=6;AO=59;CIGAR=1X;DP=154;DPB=154;DPRA=0;EPP=131.127;EPPR=207.129;GTI=0;LEN=1;MEANALT=1.33333;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=2341;QR=3778;RO=94;RPL=0;RPP=131.127;RPPR=207.129;RPR=59;RUN=1;SAF=59;SAP=131.127;SAR=0;SRF=94;SRP=207.129;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:92:56,35:56:2263:35:1380:-96.6611,0,-176.02 0/1:17:9,8:9:354:8:321:-24.1404,0,-27.1022 0/1:45:29,16:29:1161:16:640:-44.3888,0,-91.2213 dDocent_Contig_8 13 . G T 546.288 . AB=0.283951;ABP=35.8505;AC=3;AF=0.5;AN=6;AO=23;CIGAR=1X;DP=81;DPB=81;DPRA=0;EPP=52.9542;EPPR=128.956;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=58.8448;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=0.965517;PAO=0;PQA=0;PQR=0;PRO=0;QA=927;QR=2329;RO=58;RPL=0;RPP=52.9542;RPPR=128.956;RPR=23;RUN=1;SAF=23;SAP=52.9542;SAR=0;SRF=58;SRP=128.956;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:54:37,17:37:1495:17:684:-45.6314,0,-118.536 0/1:11:9,2:9:359:2:79:-4.18591,0,-28.4961 0/1:16:12,4:12:475:4:164:-10.3334,0,-36.8218 dDocent_Contig_9 19 . T C 40.1519 . AB=0.113208;ABP=71.8828;AC=1;AF=0.166667;AN=6;AO=9;CIGAR=1X;DP=214;DPB=214;DPRA=0;EPP=22.5536;EPPR=448.162;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=3.46945e-18;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=331;QR=7847;RO=205;RPL=0;RPP=22.5536;RPPR=448.162;RPR=9;RUN=1;SAF=9;SAP=22.5536;SAR=0;SRF=205;SRP=448.162;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:132:130,2:130:4977:2:58:0,-34.2311,-442.399 0/0:29:28,1:28:1067:1:35:0,-5.23124,-92.8312 0/1:53:47,6:47:1803:6:238:-5.83906,0,-146.558 dDocent_Contig_10 40 . T C 6792.41 . AB=0.633238;ABP=56.8242;AC=3;AF=0.5;AN=6;AO=221;CIGAR=1X;DP=349;DPB=349;DPRA=0;EPP=482.906;EPPR=272.341;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=8773;QR=5133;RO=128;RPL=0;RPP=482.906;RPPR=272.341;RPR=221;RUN=1;SAF=221;SAP=482.906;SAR=0;SRF=128;SRP=280.959;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:196:67,129:67:2697:129:5200:-408.836,0,-183.84 0/1:54:19,35:19:759:35:1347:-105.226,0,-52.371 0/1:99:42,57:42:1677:57:2226:-170.702,0,-121.358 dDocent_Contig_11 41 . G C 3129.93 . AB=0.565217;ABP=9.80795;AC=3;AF=0.5;AN=6;AO=104;CIGAR=1X;DP=184;DPB=184;DPRA=0;EPP=228.843;EPPR=176.728;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=4146;QR=3142;RO=80;RPL=0;RPP=228.843;RPPR=176.728;RPR=104;RUN=1;SAF=104;SAP=228.843;SAR=0;SRF=80;SRP=176.728;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:131:48,83:48:1877:83:3311:-258.609,0,-129.699 0/1:19:10,9:10:379:9:361:-27.1334,0,-28.7356 0/1:34:22,12:22:886:12:474:-32.7734,0,-69.8118 dDocent_Contig_12 141 . A T 196.784 . AB=0.207547;ABP=42.3836;AC=2;AF=0.333333;AN=6;AO=11;CIGAR=1X;DP=68;DPB=68;DPRA=1.76667;EPP=26.8965;EPPR=126.784;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=427;QR=2270;RO=57;RPL=0;RPP=26.8965;RPPR=126.784;RPR=11;RUN=1;SAF=0;SAP=26.8965;SAR=11;SRF=0;SRP=126.784;SRR=57;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:41:34,7:34:1354:7:282:-13.4104,0,-109.776 0/1:12:8,4:8:323:4:145:-9.79095,0,-25.8262 0/0:15:15,0:15:593:0:0:0,-4.51545,-53.7033 dDocent_Contig_13 18 . T C 575.895 . AB=0.289474;ABP=32.268;AC=3;AF=0.5;AN=6;AO=22;CIGAR=6M1I6M1X9M1X3M;DP=76;DPB=77.3462;DPRA=0;EPP=50.7827;EPPR=57.2971;GTI=0;LEN=1;MEANALT=4;MQM=60;MQMR=60;NS=3;NUMALT=3;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=828;QR=976;RO=25;RPL=0;RPP=50.7827;RPPR=57.2971;RPR=22;RUN=1;SAF=22;SAP=50.7827;SAR=0;SRF=25;SRP=57.2971;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|1:38:14,7,8,7:14:548:7,8,7:275,278,246:-18.4153,0,-42.9663,-0.0390929,-22.4823,-42.6956,-2.61978,-25.0637,-25.0977,-45.5784 0|1:16:4,4,0,7:4:155:4,0,7:154,0,270:-20.9642,-9.52578,-21.0557,-22.1684,-22.2598,-34.9026,0,-0.0925859,-12.7338,-10.6266 0|1:22:7,5,1,8:7:273:5,1,8:204,35,312:-23.5356,-8.8041,-29.7407,-22.7981,-28.4005,-44.9351,0,-5.59725,-19.5922,-20.0284 dDocent_Contig_14 198 . G A 143.127 . AB=0.174603;ABP=60.9507;AC=2;AF=0.333333;AN=6;AO=11;CIGAR=1X;DP=103;DPB=103;DPRA=0.7875;EPP=26.8965;EPPR=202.786;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=401;QR=3470;RO=92;RPL=11;RPP=26.8965;RPPR=202.786;RPR=0;RUN=1;SAF=0;SAP=26.8965;SAR=11;SRF=0;SRP=202.786;SRR=92;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:46:39,7:39:1460:7:247:-8.71964,0,-117.831 0/0:40:40,0:40:1516:0:0:0,-12.0412,-136.717 0/1:17:13,4:13:494:4:154:-9.11595,0,-39.6879 dDocent_Contig_15 29 . A G 33.2315 . AB=0.109091;ABP=76.0113;AC=1;AF=0.166667;AN=6;AO=8;CIGAR=1X2M1X;DP=189;DPB=189;DPRA=4.75;EPP=20.3821;EPPR=396.047;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=313;QR=7081;RO=181;RPL=0;RPP=20.3821;RPPR=396.047;RPR=8;RUN=1;SAF=8;SAP=20.3821;SAR=0;SRF=181;SRP=396.047;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|0:116:114,2:114:4465:2:76:0,-27.7052,-394.622 0|0:18:18,0:18:704:0:0:0,-5.41854,-63.6898 0|1:55:49,6:49:1912:6:237:-5.14685,0,-155.742 dDocent_Contig_16 209 . N G 153.863 . AB=0;ABP=0;AC=4;AF=1;AN=4;AO=4;CIGAR=1X;DP=4;DPB=4;DPRA=0;EPP=11.6962;EPPR=0;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=0;NS=2;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=159;QR=0;RO=0;RPL=4;RPP=11.6962;RPPR=0;RPR=0;RUN=1;SAF=0;SAP=11.6962;SAR=4;SRF=0;SRP=0;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL ./.:.:.:.:.:.:.:. 1/1:3:0,3:0:0:3:120:-11.1873,-0.90309,0 1/1:1:0,1:0:0:1:39:-3.89656,-0.30103,0 dDocent_Contig_17 12 . G A 78.8003 . AB=0.14;ABP=59.2949;AC=2;AF=0.333333;AN=6;AO=8;CIGAR=1X;DP=76;DPB=76;DPRA=0;EPP=20.3821;EPPR=150.67;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=323;QR=2664;RO=68;RPL=0;RPP=20.3821;RPPR=150.67;RPR=8;RUN=1;SAF=8;SAP=20.3821;SAR=0;SRF=68;SRP=150.67;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:33:30,3:30:1209:3:122:-1.4385,0,-99.1498 0/1:17:13,4:13:497:4:160:-9.66592,0,-39.9503 0/0:26:25,1:25:958:1:41:0,-3.73221,-82.4163 dDocent_Contig_18 77 . C T 358.74 . AB=0.395349;ABP=7.10075;AC=2;AF=0.333333;AN=6;AO=20;CIGAR=1X;DP=76;DPB=76;DPRA=0;EPP=46.4397;EPPR=124.613;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=0.8;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=679;QR=1942;RO=56;RPL=20;RPP=46.4397;RPPR=124.613;RPR=0;RUN=1;SAF=20;SAP=46.4397;SAR=0;SRF=56;SRP=124.613;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:31:16,15:16:556:15:506:-36.5302,0,-41.0339 0/1:12:10,2:10:358:2:68:-2.84552,0,-28.9505 0/0:33:30,3:30:1028:3:105:0,-0.137828,-83.0335 dDocent_Contig_20 17 . G A 2214.03 . AB=0.04;ABP=278.7;AC=0;AF=0;AN=6;AO=6;CIGAR=2X;DP=164;DPB=164;DPRA=5.35714;EPP=16.0391;EPPR=181.071;GTI=0;LEN=1;MEANALT=2;MQM=59;MQMR=60;NS=3;NUMALT=2;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=238;QR=3153;RO=82;RPL=0;RPP=16.0391;RPPR=181.071;RPR=6;RUN=1;SAF=6;SAP=16.0391;SAR=0;SRF=82;SRP=181.071;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|0:87:43,2,42:43:1644:2,42:80,1677:-125.176,-131.53,-265.81,0,-128.284,-122.231 0|0:14:13,0,1:13:490:0,1:0,41:0,-3.91339,-44.031,-0.119853,-40.6446,-40.3436 0|0:63:26,4,33:26:1019:4,33:158,1307:-99.7494,-94.5836,-177.175,0,-70.8016,-73.8607 dDocent_Contig_21 150 . G T 57.1941 . AB=0.190476;ABP=20.4855;AC=1;AF=0.166667;AN=6;AO=4;CIGAR=1X;DP=106;DPB=106;DPRA=0.494118;EPP=11.6962;EPPR=224.5;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=150;QR=4018;RO=102;RPL=0;RPP=11.6962;RPPR=224.5;RPR=4;RUN=1;SAF=0;SAP=11.6962;SAR=4;SRF=0;SRP=224.5;SRR=102;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:72:72,0:72:2847:0:0:0,-21.6742,-256.334 0/0:13:13,0:13:497:0:0:0,-3.91339,-45.0678 0/1:21:17,4:17:674:4:150:-7.54331,0,-54.6673 dDocent_Contig_22 8 . A T 5602.03 . AB=0.828054;ABP=209.595;AC=3;AF=0.5;AN=6;AO=183;CIGAR=1X;DP=221;DPB=221;DPRA=0;EPP=400.39;EPPR=85.5263;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=7018;QR=1452;RO=38;RPL=0;RPP=400.39;RPPR=85.5263;RPR=183;RUN=1;SAF=183;SAP=400.39;SAR=0;SRF=38;SRP=85.5263;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:132:25,107:25:959:107:4119:-331.048,0,-46.889 0/1:33:7,26:7:267:26:992:-79.6574,0,-14.4586 0/1:56:6,50:6:226:50:1907:-155.018,0,-3.84326 dDocent_Contig_23 14 . G A 1685.19 . AB=0.284519;ABP=99.4001;AC=3;AF=0.5;AN=6;AO=68;CIGAR=1X;DP=239;DPB=239;DPRA=0;EPP=150.67;EPPR=374.332;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=1.38778e-17;PAIRED=0.970588;PAIREDR=0.97076;PAO=0;PQA=0;PQR=0;PRO=0;QA=2723;QR=6782;RO=171;RPL=0;RPP=150.67;RPPR=374.332;RPR=68;RUN=1;SAF=68;SAP=150.67;SAR=0;SRF=171;SRP=374.332;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:126:81,45:81:3226:45:1796:-123.922,0,-252.464 0/1:55:47,8:47:1848:8:320:-12.611,0,-149.977 0/1:58:43,15:43:1708:15:607:-37.5085,0,-136.481 dDocent_Contig_24 23 . C T 189.813 . AB=0.125;ABP=22.5536;AC=0;AF=0;AN=6;AO=2;CIGAR=2X3M2X2M1X;DP=97;DPB=97;DPRA=0;EPP=7.35324;EPPR=163.699;GTI=0;LEN=1;MEANALT=4;MQM=19;MQMR=60;NS=3;NUMALT=3;ODDS=0;PAIRED=0;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=66;QR=2863;RO=74;RPL=0;RPP=7.35324;RPPR=163.699;RPR=2;RUN=1;SAF=0;SAP=7.35324;SAR=2;SRF=74;SRP=163.699;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|0:65:55,0,0,9:55:2129:0,0,9:0,0,339:-11.189,-27.7456,-202.625,-27.7456,-202.625,-202.625,0,-174.851,-174.851,-172.141 0|0:16:8,2,3,2:8:313:2,3,2:66,99,79:-5.45968,-5.12309,-30.2757,0,-23.0298,-24.8826,-1.3404,-24.3738,-19.2783,-26.5323 0|0:16:11,0,0,4:11:421:0,0,4:0,0,138:-7.84887,-11.1602,-45.7259,-11.1602,-45.7259,-45.7259,0,-34.5315,-34.5315,-33.3274 dDocent_Contig_25 167 . A G 443.247 . AB=0.159574;ABP=192.252;AC=3;AF=0.5;AN=6;AO=30;CIGAR=1X;DP=188;DPB=188;DPRA=0;EPP=68.1545;EPPR=346.103;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=1171;QR=6278;RO=158;RPL=30;RPP=68.1545;RPPR=346.103;RPR=0;RUN=1;SAF=0;SAP=68.1545;SAR=30;SRF=0;SRP=346.103;SRR=158;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:68:55,13:55:2184:13:516:-26.3149,0,-176.253 0/1:65:56,9:56:2227:9:347:-12.0156,0,-181.035 0/1:55:47,8:47:1867:8:308:-11.5172,0,-151.678 dDocent_Contig_27 160 . G C 455.001 . AB=0.169697;ABP=159.369;AC=1;AF=0.166667;AN=6;AO=29;CIGAR=1X;DP=249;DPB=249;DPRA=9.875;EPP=65.983;EPPR=480.734;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=1110;QR=8451;RO=220;RPL=29;RPP=65.983;RPPR=480.734;RPR=0;RUN=1;SAF=0;SAP=65.983;SAR=29;SRF=0;SRP=480.734;SRR=220;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:165:137,28:137:5292:28:1071:-47.023,0,-426.553 0/0:12:12,0:12:458:0:0:0,-3.61236,-41.5614 0/0:72:71,1:71:2701:1:39:0,-17.7776,-239.355 dDocent_Contig_28 98 . N T 473.515 . AB=0;ABP=0;AC=6;AF=1;AN=6;AO=16;CIGAR=2X;DP=16;DPB=91.5;DPRA=0;EPP=37.7539;EPPR=0;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=0;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=0;PAO=151;PQA=5042;PQR=0;PRO=0;QA=521;QR=0;RO=0;RPL=16;RPP=37.7539;RPPR=0;RPR=0;RUN=1;SAF=16;SAP=37.7539;SAR=0;SRF=0;SRP=0;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 1|1:11:0,11:0:0:11:353:-31.7575,-3.31133,0 1|1:4:0,4:0:0:4:138:-12.4165,-1.20412,0 1|1:1:0,1:0:0:1:30:-2.69917,-0.30103,0 dDocent_Contig_29 30 . C A 916.861 . AB=0.395349;ABP=11.1912;AC=3;AF=0.5;AN=6;AO=34;CIGAR=1X;DP=86;DPB=86;DPRA=0;EPP=76.8404;EPPR=115.927;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=1356;QR=2021;RO=52;RPL=0;RPP=76.8404;RPPR=115.927;RPR=34;RUN=1;SAF=34;SAP=76.8404;SAR=0;SRF=52;SRP=115.927;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:28:18,10:18:714:10:407:-28.5616,0,-56.1511 0/1:33:21,12:21:793:12:486:-34.1571,0,-61.7467 0/1:25:13,12:13:514:12:463:-34.4904,0,-39.0753 dDocent_Contig_31 13 . A G 110.11 . AB=0.181818;ABP=22.3561;AC=0;AF=0;AN=6;AO=4;CIGAR=1X3M1X;DP=144;DPB=144;DPRA=0.360656;EPP=11.6962;EPPR=270.17;GTI=0;LEN=1;MEANALT=2;MQM=60;MQMR=59.9528;NS=3;NUMALT=2;ODDS=0;PAIRED=1;PAIREDR=0.992126;PAO=0;PQA=0;PQR=0;PRO=0;QA=158;QR=5056;RO=127;RPL=0;RPP=11.6962;RPPR=278.787;RPR=4;RUN=1;SAF=4;SAP=11.6962;SAR=0;SRF=126;SRP=270.17;SRR=1;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|0:103:95,0,6:95:3795:0,6:0,242:0,-28.5978,-341.196,-8.56282,-321.249,-319.443 0|0:19:19,0,0:19:758:0,0:0,0:0,-5.71957,-68.5455,-5.71957,-68.5455,-68.5455 0|0:22:13,4,5:13:503:4,5:158,203:-12.8349,-3.75184,-43.8428,0,-28.2994,-39.7974 dDocent_Contig_32 22 . A G 6406.41 . AB=0.0507812;ABP=451.725;AC=0;AF=0;AN=6;AO=13;CIGAR=6M1X4M;DP=560;DPB=472.364;DPRA=0;EPP=31.2394;EPPR=647.938;GTI=0;LEN=1;MEANALT=4;MQM=60;MQMR=60;NS=3;NUMALT=2;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=494;QR=11623;RO=297;RPL=0;RPP=31.2394;RPPR=647.938;RPR=13;RUN=1;SAF=13;SAP=31.2394;SAR=0;SRF=297;SRP=647.938;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|0:256:103,137,13:103:4026:137,13:5113,494:-387.502,0,-289.745,-378.007,-290.486,-705.081 0|0:144:90,50,0:90:3528:50,0:1850,0:-124.262,0,-275.119,-151.355,-290.17,-441.484 0|0:160:104,54,0:104:4069:54,0:2022,0:-134.399,0,-318.448,-165.706,-334.703,-500.266 dDocent_Contig_34 59 . C T 4566.72 . AB=0.788043;ABP=135.612;AC=3;AF=0.5;AN=6;AO=145;CIGAR=1X;DP=184;DPB=184;DPRA=0;EPP=317.874;EPPR=87.6977;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=5744;QR=1550;RO=39;RPL=145;RPP=317.874;RPPR=87.6977;RPR=0;RUN=1;SAF=145;SAP=317.874;SAR=0;SRF=39;SRP=87.6977;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:131:26,105:26:1036:105:4139:-333.061,0,-54.0976 0/1:9:2,7:2:81:7:285:-23.3151,0,-4.97646 0/1:44:11,33:11:433:33:1320:-105.819,0,-26.0755 dDocent_Contig_35 34 . C A 234.749 . AB=0.203125;ABP=52.0041;AC=1;AF=0.166667;AN=6;AO=14;CIGAR=1X;DP=120;DPB=120;DPRA=1.03846;EPP=33.4109;EPPR=233.186;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=518;QR=4191;RO=106;RPL=0;RPP=33.4109;RPPR=233.186;RPR=14;RUN=1;SAF=14;SAP=33.4109;SAR=0;SRF=106;SRP=233.186;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:64:51,13:51:2024:13:488:-24.9977,0,-163.1 0/0:17:16,1:16:627:1:30:0,-2.11794,-53.7678 0/0:39:39,0:39:1540:0:0:0,-11.7402,-138.852 dDocent_Contig_36 21 . G A 3118.76 . AB=0.49763;ABP=3.02059;AC=3;AF=0.5;AN=6;AO=105;CIGAR=1X;DP=211;DPB=211;DPRA=0;EPP=231.015;EPPR=233.186;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=1.38778e-17;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=4224;QR=4217;RO=106;RPL=0;RPP=231.015;RPPR=233.186;RPR=105;RUN=1;SAF=105;SAP=231.015;SAR=0;SRF=106;SRP=233.186;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:116:62,54:62:2476:54:2172:-160.73,0,-188.066 0/1:65:30,35:30:1193:35:1405:-107.138,0,-88.0787 0/1:30:14,16:14:548:16:647:-49.5308,0,-40.6275 dDocent_Contig_39 33 . T A 877.822 . AB=0.34375;ABP=23.3679;AC=3;AF=0.5;AN=6;AO=33;CIGAR=1X;DP=96;DPB=96;DPRA=0;EPP=74.6689;EPPR=139.813;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=1346;QR=2524;RO=63;RPL=0;RPP=74.6689;RPPR=139.813;RPR=33;RUN=1;SAF=33;SAP=74.6689;SAR=0;SRF=63;SRP=139.813;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:56:36,20:36:1451:20:819:-57.1645,0,-113.979 0/1:15:8,7:8:318:7:283:-21.3276,0,-24.4692 0/1:25:19,6:19:755:6:244:-14.8131,0,-60.7402 dDocent_Contig_43 26 . A C 307.193 . AB=0.245614;ABP=35.049;AC=2;AF=0.333333;AN=6;AO=15;CIGAR=1X;DP=72;DPB=72;DPRA=0;EPP=35.5824;EPPR=126.784;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=0.933333;PAIREDR=0.842105;PAO=0;PQA=0;PQR=0;PRO=0;QA=602;QR=2253;RO=57;RPL=0;RPP=35.5824;RPPR=126.784;RPR=15;RUN=1;SAF=15;SAP=35.5824;SAR=0;SRF=57;SRP=126.784;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:44:33,11:33:1297:11:448:-27.4305,0,-103.752 0/0:15:14,1:14:563:1:39:0,-0.618885,-47.1163 0/1:13:10,3:10:393:3:115:-6.81134,0,-31.812 dDocent_Contig_44 46 . T G 628.417 . AB=0.479167;ABP=3.19126;AC=3;AF=0.5;AN=6;AO=23;CIGAR=1X;DP=48;DPB=48;DPRA=0;EPP=52.9542;EPPR=57.2971;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=908;QR=1000;RO=25;RPL=0;RPP=52.9542;RPPR=57.2971;RPR=23;RUN=1;SAF=23;SAP=52.9542;SAR=0;SRF=25;SRP=57.2971;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:16:8,8:8:315:8:314:-23.8058,0,-23.8966 0/1:20:12,8:12:480:8:310:-22.2372,0,-37.5317 0/1:12:5,7:5:205:7:284:-22.3216,0,-15.2226 dDocent_Contig_45 17 . A G 1437.25 . AB=0.64;ABP=15.7786;AC=3;AF=0.5;AN=6;AO=48;CIGAR=1X;DP=75;DPB=75;DPRA=0;EPP=107.241;EPPR=61.6401;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=1898;QR=1080;RO=27;RPL=0;RPP=107.241;RPPR=61.6401;RPR=48;RUN=1;SAF=48;SAP=107.241;SAR=0;SRF=27;SRP=61.6401;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:34:11,23:11:433:23:914:-72.3322,0,-29.0863 0/1:11:2,9:2:82:9:357:-29.1814,0,-4.46835 0/1:30:14,16:14:565:16:627:-47.7342,0,-42.1588 dDocent_Contig_46 25 . G A 221.023 . AB=0.533333;ABP=3.15506;AC=1;AF=0.166667;AN=6;AO=10;CIGAR=1X;DP=81;DPB=81;DPRA=0.657143;EPP=24.725;EPPR=157.185;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=391;QR=2821;RO=71;RPL=0;RPP=24.725;RPPR=157.185;RPR=10;RUN=1;SAF=10;SAP=24.725;SAR=0;SRF=71;SRP=157.185;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:35:35,0:35:1413:0:0:0,-10.536,-127.418 0/1:15:7,8:7:276:8:312:-23.9262,0,-20.6913 0/0:31:29,2:29:1132:2:79:0,-1.83469,-94.6638 dDocent_Contig_47 35 . T C 3149.89 . AB=0.520619;ABP=3.72666;AC=3;AF=0.5;AN=6;AO=101;CIGAR=1X4M;DP=194;DPB=194;DPRA=0;EPP=222.329;EPPR=111.584;GTI=0;LEN=1;MEANALT=3;MQM=60;MQMR=60;NS=3;NUMALT=3;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=4071;QR=1957;RO=50;RPL=0;RPP=222.329;RPPR=111.584;RPR=101;RUN=1;SAF=101;SAP=222.329;SAR=0;SRF=50;SRP=111.584;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|1:83:28,19,6,30:28:1113:19,6,30:750,236,1206:-90.9545,-37.7051,-123.619,-79.9709,-109.926,-169.799,0,-29.9568,-72.2235,-82.6053 0|1:47:8,4,1,34:8:305:4,1,34:158,40,1367:-110.248,-99.6649,-123.472,-109.361,-121.381,-134.071,0,-12.0109,-21.7098,-14.771 0|1:64:14,8,5,37:14:539:8,5,37:317,198,1498:-119.31,-97.4473,-139.286,-107.229,-125.398,-149.971,0,-18.1652,-27.948,-33.1078 dDocent_Contig_48 8 . T C 985.571 . AB=0.378378;ABP=17.2716;AC=3;AF=0.5;AN=6;AO=42;CIGAR=1X;DP=111;DPB=111;DPRA=0;EPP=94.2121;EPPR=152.842;GTI=0;LEN=1;MEANALT=1;MQM=40;MQMR=57.7391;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=1615;QR=2651;RO=69;RPL=0;RPP=94.2121;RPPR=152.842;RPR=42;RUN=1;SAF=42;SAP=94.2121;SAR=0;SRF=69;SRP=152.842;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:66:37,29:37:1435:29:1120:-75.0357,0,-109.559 0/1:17:12,5:12:454:5:185:-10.9683,0,-35.8611 0/1:28:20,8:20:762:8:310:-18.076,0,-59.2672 dDocent_Contig_49 46 . G A 209.581 . AB=0.144144;ABP=125.102;AC=2;AF=0.333333;AN=6;AO=17;CIGAR=1X;DP=133;DPB=133;DPRA=0;EPP=39.9253;EPPR=254.901;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=675;QR=4629;RO=116;RPL=0;RPP=39.9253;RPPR=254.901;RPR=17;RUN=1;SAF=17;SAP=39.9253;SAR=0;SRF=116;SRP=254.901;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:94:80,14:80:3194:14:559:-22.3551,0,-259.231 0/1:17:15,2:15:600:2:75:-2.00129,0,-49.2193 0/0:22:21,1:21:835:1:41:0,-2.52809,-71.3666 dDocent_Contig_50 16 . T C 3667.28 . AB=0.775641;ABP=105.96;AC=3;AF=0.5;AN=6;AO=121;CIGAR=2X;DP=156;DPB=156;DPRA=0;EPP=265.758;EPPR=79.0118;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=4649;QR=1338;RO=35;RPL=0;RPP=265.758;RPPR=79.0118;RPR=121;RUN=1;SAF=121;SAP=265.758;SAR=0;SRF=35;SRP=79.0118;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|1:59:13,46:13:504:46:1769:-141.695,0,-27.9458 0|1:60:14,46:14:531:46:1755:-140.146,0,-30.0666 0|1:37:8,29:8:303:29:1125:-90.4099,0,-16.4842 dDocent_Contig_51 118 . T C 171.073 . AB=0.229167;ABP=33.5919;AC=1;AF=0.166667;AN=6;AO=12;CIGAR=1X;DP=77;DPB=77;DPRA=2.25;EPP=29.068;EPPR=144.156;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=3.46945e-18;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=399;QR=2240;RO=65;RPL=0;RPP=29.068;RPPR=144.156;RPR=12;RUN=1;SAF=0;SAP=29.068;SAR=12;SRF=0;SRP=144.156;SRR=65;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:48:37,11:37:1280:11:364:-18.63,0,-101.054 0/0:14:14,0:14:477:0:0:0,-4.21442,-43.256 0/0:15:14,1:14:483:1:35:0,-1.01682,-40.3006 dDocent_Contig_52 24 . C T 48.434 . AB=0.0681818;ABP=74.2741;AC=1;AF=0.166667;AN=6;AO=3;CIGAR=1X2M1X2M2X;DP=103;DPB=103;DPRA=0;EPP=9.52472;EPPR=196.271;GTI=0;LEN=1;MEANALT=2.5;MQM=60;MQMR=60;NS=3;NUMALT=2;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=119;QR=3473;RO=89;RPL=0;RPP=9.52472;RPPR=196.271;RPR=3;RUN=1;SAF=3;SAP=9.52472;SAR=0;SRF=89;SRP=196.271;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|0:59:53,0,6:53:2073:0,6:0,240:-4.21526,-20.1698,-190.603,0,-170.832,-169.026 0|1:12:8,2,1:8:301:2,1:79,41:-4.12766,0,-24.1001,-3.13523,-21.3132,-27.5193 0|0:32:28,1,3:28:1099:1,3:40,117:-1.18028,-6.31155,-96.4005,0,-87.0852,-89.4775 dDocent_Contig_53 19 . C T 91.0365 . AB=0.181818;ABP=32.0291;AC=2;AF=0.333333;AN=6;AO=8;CIGAR=1X;DP=61;DPB=61;DPRA=0;EPP=20.3821;EPPR=118.098;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=0.625;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=324;QR=2134;RO=53;RPL=0;RPP=20.3821;RPPR=118.098;RPR=8;RUN=1;SAF=8;SAP=20.3821;SAR=0;SRF=53;SRP=118.098;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:28:26,2:26:1051:2:82:0,-0.649162,-87.0978 0/1:17:14,3:14:560:3:121:-6.16269,0,-45.6257 0/1:16:13,3:13:523:3:121:-6.46351,0,-42.6005 dDocent_Contig_55 175 . A T 329.714 . AB=0.174312;ABP=103.436;AC=2;AF=0.333333;AN=6;AO=23;CIGAR=1X;DP=215;DPB=215;DPRA=0;EPP=52.9542;EPPR=419.933;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=915;QR=7490;RO=192;RPL=23;RPP=52.9542;RPPR=419.933;RPR=0;RUN=1;SAF=0;SAP=52.9542;SAR=23;SRF=0;SRP=419.933;SRR=192;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:106:102,4:102:3996:4:153:0,-17.7701,-345.503 0/1:24:20,4:20:776:4:162:-7.74224,0,-62.939 0/1:85:70,15:70:2718:15:600:-28.752,0,-219.175 dDocent_Contig_56 28 . A C 69.4399 . AB=0.139535;ABP=51.5402;AC=1;AF=0.166667;AN=6;AO=14;CIGAR=1X;DP=221;DPB=221;DPRA=0;EPP=33.4109;EPPR=450.334;GTI=0;LEN=1;MEANALT=1.33333;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=558;QR=7977;RO=206;RPL=0;RPP=33.4109;RPPR=450.334;RPR=14;RUN=1;SAF=14;SAP=33.4109;SAR=0;SRF=206;SRP=450.334;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:104:99,5:99:3824:5:201:0,-12.8364,-325.734 0/0:74:71,3:71:2745:3:119:0,-11.1812,-236.119 0/1:43:36,6:36:1408:6:238:-8.7679,0,-113.966 dDocent_Contig_57 39 . T C 176.62 . AB=0.35;ABP=6.91895;AC=1;AF=0.166667;AN=6;AO=8;CIGAR=1X;DP=39;DPB=39;DPRA=2.75;EPP=20.3821;EPPR=70.3259;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=315;QR=1194;RO=31;RPL=0;RPP=20.3821;RPPR=70.3259;RPR=8;RUN=1;SAF=8;SAP=20.3821;SAR=0;SRF=31;SRP=70.3259;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:20:13,7:13:499:7:276:-19.1835,0,-39.2338 0/0:6:6,0:6:237:0:0:0,-1.80618,-21.703 0/0:13:12,1:12:458:1:39:0,-0.0168255,-37.6696 dDocent_Contig_58 13 . A T 2291.12 . AB=0.783333;ABP=44.8473;AC=4;AF=0.666667;AN=6;AO=71;CIGAR=1X;DP=86;DPB=86;DPRA=0;EPP=157.185;EPPR=35.5824;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=2862;QR=600;RO=15;RPL=0;RPP=157.185;RPPR=35.5824;RPR=71;RUN=1;SAF=71;SAP=157.185;SAR=0;SRF=15;SRP=35.5824;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:36:8,28:8:318:28:1140:-92.0402,0,-18.1478 0/1:24:5,19:5:200:19:770:-62.3957,0,-11.1548 1/1:26:2,24:2:82:24:952:-78.1978,-0.0471025,0 dDocent_Contig_59 13 . T G 3835.7 . AB=0.352078;ABP=80.7426;AC=3;AF=0.5;AN=6;AO=144;CIGAR=1X;DP=409;DPB=409;DPRA=0;EPP=315.702;EPPR=494.287;GTI=0;LEN=1;MEANALT=1.66667;MQM=60;MQMR=56.954;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=0.934866;PAO=0;PQA=0;PQR=0;PRO=0;QA=5680;QR=10301;RO=261;RPL=0;RPP=315.702;RPPR=569.765;RPR=144;RUN=1;SAF=144;SAP=315.702;SAR=0;SRF=252;SRP=494.287;SRR=9;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:221:125,96:125:5003:96:3779:-273.593,0,-377.964 0/1:102:78,22:78:3021:22:872:-48.2837,0,-234.391 0/1:86:58,26:58:2277:26:1029:-67.2166,0,-177.328 dDocent_Contig_60 7 . A T 508.869 . AB=0.333333;ABP=18.2106;AC=3;AF=0.5;AN=6;AO=21;CIGAR=1X;DP=63;DPB=63;DPRA=0;EPP=48.6112;EPPR=94.2121;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=55.2857;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=0.785714;PAO=0;PQA=0;PQR=0;PRO=0;QA=810;QR=1597;RO=42;RPL=0;RPP=48.6112;RPPR=94.2121;RPR=21;RUN=1;SAF=21;SAP=48.6112;SAR=0;SRF=42;SRP=94.2121;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:36:26,10:26:990:10:387:-24.3506,0,-78.1538 0/1:19:14,5:14:530:5:193:-12.0218,0,-41.7013 0/1:8:2,6:2:77:6:230:-18.6585,0,-0.627219 dDocent_Contig_61 25 . C A 45.1547 . AB=0.16;ABP=28.1125;AC=1;AF=0.166667;AN=6;AO=10;CIGAR=2X;DP=451;DPB=451;DPRA=0;EPP=24.725;EPPR=960.63;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=368;QR=16616;RO=441;RPL=0;RPP=24.725;RPPR=960.63;RPR=10;RUN=1;SAF=10;SAP=24.725;SAR=0;SRF=441;SRP=960.63;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|0:325:323,2:323:12162:2:77:0,-90.5256,-1086.83 0|1:25:21,4:21:790:4:150:-6.33936,0,-63.8964 0|0:101:97,4:97:3664:4:141:0,-17.3707,-316.854 dDocent_Contig_62 52 . G A 65.6185 . AB=0.333333;ABP=5.18177;AC=1;AF=0.166667;AN=6;AO=3;CIGAR=1X;DP=30;DPB=30;DPRA=0.857143;EPP=9.52472;EPPR=61.6401;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=119;QR=1042;RO=27;RPL=3;RPP=9.52472;RPPR=61.6401;RPR=0;RUN=1;SAF=3;SAP=9.52472;SAR=0;SRF=27;SRP=61.6401;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:14:14,0:14:538:0:0:0,-4.21442,-48.7564 0/1:9:6,3:6:238:3:119:-8.38574,0,-19.0849 0/0:7:7,0:7:266:0:0:0,-2.10721,-24.2965 dDocent_Contig_63 52 . G A 212.229 . AB=0.533333;ABP=3.15506;AC=1;AF=0.166667;AN=6;AO=8;CIGAR=1X;DP=43;DPB=43;DPRA=1.07143;EPP=20.3821;EPPR=79.0118;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=8.67362e-19;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=299;QR=1335;RO=35;RPL=8;RPP=20.3821;RPPR=79.0118;RPR=0;RUN=1;SAF=8;SAP=20.3821;SAR=0;SRF=35;SRP=79.0118;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:15:7,8:7:251:8:299:-22.7458,0,-18.4171 0/0:14:14,0:14:551:0:0:0,-4.21442,-49.9347 0/0:14:14,0:14:533:0:0:0,-4.21442,-48.3096 dDocent_Contig_64 98 . N A 1720.31 . AB=0;ABP=0;AC=6;AF=1;AN=6;AO=55;CIGAR=1X;DP=55;DPB=55;DPRA=0;EPP=122.441;EPPR=0;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=0;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=1894;QR=0;RO=0;RPL=55;RPP=122.441;RPPR=0;RPR=0;RUN=1;SAF=55;SAP=122.441;SAR=0;SRF=0;SRP=0;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 1/1:34:0,34:0:0:34:1175:-106.057,-10.235,0 1/1:9:0,9:0:0:9:310:-28.2343,-2.70927,0 1/1:12:0,12:0:0:12:409:-37.1378,-3.61236,0 dDocent_Contig_65 202 . G T 121.341 . AB=0.157895;ABP=60.9543;AC=2;AF=0.333333;AN=6;AO=17;CIGAR=1X2M1X;DP=163;DPB=163;DPRA=0;EPP=39.9253;EPPR=317.874;GTI=0;LEN=1;MEANALT=1.33333;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=679;QR=5694;RO=145;RPL=17;RPP=39.9253;RPPR=317.874;RPR=0;RUN=1;SAF=0;SAP=39.9253;SAR=17;SRF=0;SRP=317.874;SRR=145;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|0:106:97,8:97:3827:8:323:0,-2.56917,-315.019 0|1:29:23,6:23:902:6:233:-12.6079,0,-72.7537 0|1:28:25,3:25:965:3:123:-3.03595,0,-78.7153 dDocent_Contig_66 18 . A C 54.6342 . AB=0.12;ABP=65.7224;AC=1;AF=0.166667;AN=6;AO=11;CIGAR=1X;DP=247;DPB=247;DPRA=1.34328;EPP=26.8965;EPPR=515.478;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=6.93889e-18;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=440;QR=9410;RO=236;RPL=0;RPP=26.8965;RPPR=515.478;RPR=11;RUN=1;SAF=11;SAP=26.8965;SAR=0;SRF=236;SRP=515.478;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:130:125,5:125:4998:5:196:0,-21.1194,-431.678 0/0:67:67,0:67:2639:0:0:0,-20.169,-237.65 0/1:50:44,6:44:1773:6:244:-7.28733,0,-144.732 dDocent_Contig_67 23 . T A 2659.44 . AB=0.330097;ABP=80.4876;AC=3;AF=0.5;AN=6;AO=102;CIGAR=1X;DP=309;DPB=309;DPRA=0;EPP=224.5;EPPR=452.505;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=4041;QR=8250;RO=207;RPL=0;RPP=224.5;RPPR=452.505;RPR=102;RUN=1;SAF=102;SAP=224.5;SAR=0;SRF=207;SRP=452.505;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:181:115,66:115:4597:66:2614:-180.918,0,-359.161 0/1:45:28,17:28:1110:17:669:-46.9936,0,-86.641 0/1:83:64,19:64:2543:19:758:-43.5547,0,-204.026 dDocent_Contig_68 52 . T A 144.856 . AB=0.163636;ABP=57.0602;AC=2;AF=0.333333;AN=6;AO=9;CIGAR=1X;DP=63;DPB=63;DPRA=3.4375;EPP=22.5536;EPPR=120.27;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=362;QR=2092;RO=54;RPL=9;RPP=22.5536;RPPR=120.27;RPR=0;RUN=1;SAF=9;SAP=22.5536;SAR=0;SRF=54;SRP=120.27;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:33:26,7:26:972:7:284:-15.9998,0,-77.8302 0/0:8:8,0:8:324:0:0:0,-2.40824,-29.5288 0/1:22:20,2:20:796:2:78:-0.780641,0,-65.3287 dDocent_Contig_70 25 . C G 275.024 . AB=0.34375;ABP=9.79615;AC=1;AF=0.166667;AN=6;AO=14;CIGAR=1X;DP=86;DPB=86;DPRA=5.64286;EPP=33.4109;EPPR=159.356;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=552;QR=2843;RO=72;RPL=0;RPP=33.4109;RPPR=159.356;RPR=14;RUN=1;SAF=14;SAP=33.4109;SAR=0;SRF=72;SRP=159.356;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:47:44,3:44:1716:3:123:0,-2.68362,-143.193 0/0:7:7,0:7:280:0:0:0,-2.10721,-25.5718 0/1:32:21,11:21:847:11:429:-29.3263,0,-66.9099 dDocent_Contig_71 12 . G A 199.444 . AB=0.212766;ABP=36.6912;AC=1;AF=0.166667;AN=6;AO=24;CIGAR=1X;DP=240;DPB=240;DPRA=0;EPP=55.1256;EPPR=469.877;GTI=0;LEN=1;MEANALT=1.33333;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=948;QR=8527;RO=215;RPL=0;RPP=55.1256;RPPR=469.877;RPR=24;RUN=1;SAF=24;SAP=55.1256;SAR=0;SRF=215;SRP=469.877;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:148:137,11:137:5448:11:433:0,-5.23138,-450.826 0/0:45:42,3:42:1657:3:119:0,-2.45134,-138.259 0/1:47:36,10:36:1422:10:396:-21.7683,0,-114.008 dDocent_Contig_72 98 . N T 120.224 . AB=0;ABP=0;AC=2;AF=1;AN=2;AO=4;CIGAR=1X;DP=4;DPB=4;DPRA=0;EPP=11.6962;EPPR=0;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=0;NS=1;NUMALT=1;ODDS=7.37776;PAIRED=1;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=130;QR=0;RO=0;RPL=4;RPP=11.6962;RPPR=0;RPR=0;RUN=1;SAF=4;SAP=11.6962;SAR=0;SRF=0;SRP=0;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 1/1:4:0,4:0:0:4:130:-12.0221,-1.20412,0 ./.:.:.:.:.:.:.:. ./.:.:.:.:.:.:.:. dDocent_Contig_74 13 . G C 323.729 . AB=0.25;ABP=35.5824;AC=3;AF=0.5;AN=6;AO=15;CIGAR=1X;DP=60;DPB=60;DPRA=0;EPP=35.5824;EPPR=100.727;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=609;QR=1787;RO=45;RPL=0;RPP=35.5824;RPPR=100.727;RPR=15;RUN=1;SAF=15;SAP=35.5824;SAR=0;SRF=45;SRP=100.727;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:41:34,7:34:1345:7:286:-13.7726,0,-108.965 0/1:12:6,6:6:237:6:242:-18.5446,0,-18.0906 0/1:7:5,2:5:205:2:81:-5.57852,0,-16.7278 dDocent_Contig_75 31 . T C 291.665 . AB=0.276596;ABP=23.3852;AC=3;AF=0.5;AN=6;AO=13;CIGAR=1X;DP=47;DPB=47;DPRA=0;EPP=31.2394;EPPR=76.8404;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=3.46945e-18;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=513;QR=1364;RO=34;RPL=0;RPP=31.2394;RPPR=76.8404;RPR=13;RUN=1;SAF=13;SAP=31.2394;SAR=0;SRF=34;SRP=76.8404;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:26:16,10:16:643:10:393:-27.8968,0,-50.377 0/1:9:7,2:7:285:2:79:-4.78797,0,-23.3149 0/1:12:11,1:11:436:1:41:-0.482207,0,-35.9813 dDocent_Contig_77 51 . T A 7908.49 . AB=0.807571;ABP=263.484;AC=3;AF=0.5;AN=6;AO=256;CIGAR=1X;DP=317;DPB=317;DPRA=0;EPP=558.907;EPPR=133.299;GTI=0;LEN=1;MEANALT=1.33333;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=9907;QR=2299;RO=60;RPL=256;RPP=558.907;RPPR=133.299;RPR=0;RUN=1;SAF=256;SAP=558.907;SAR=0;SRF=60;SRP=133.299;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:176:30,146:30:1185:146:5642:-454.684,0,-53.9536 0/1:54:19,35:19:708:35:1367:-107.041,0,-47.7757 0/1:87:11,75:11:406:75:2898:-234.647,0,-10.5762 dDocent_Contig_78 32 . A C 55.5406 . AB=0.117647;ABP=67.7713;AC=1;AF=0.166667;AN=6;AO=6;CIGAR=1X;DP=103;DPB=103;DPRA=1.96154;EPP=16.0391;EPPR=213.643;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=59.7629;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=0.969072;PAO=0;PQA=0;PQR=0;PRO=0;QA=245;QR=3770;RO=97;RPL=0;RPP=16.0391;RPPR=213.643;RPR=6;RUN=1;SAF=6;SAP=16.0391;SAR=0;SRF=97;SRP=213.643;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:51:45,6:45:1757:6:245:-7.07694,0,-142.991 0/0:24:24,0:24:914:0:0:0,-7.22472,-82.5632 0/0:28:28,0:28:1099:0:0:0,-8.42884,-98.7086 dDocent_Contig_79 31 . T A 1186.43 . AB=0.0886076;ABP=119.143;AC=0;AF=0;AN=6;AO=7;CIGAR=2M1X4M;DP=154;DPB=127.143;DPRA=0;EPP=18.2106;EPPR=161.528;GTI=0;LEN=1;MEANALT=3.5;MQM=60;MQMR=60;NS=3;NUMALT=3;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=280;QR=2887;RO=73;RPL=0;RPP=18.2106;RPPR=161.528;RPR=7;RUN=1;SAF=7;SAP=18.2106;SAR=0;SRF=73;SRP=161.528;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|0:75:26,30,19,0:26:1025:30,19,0:1144,762,0:-85.9903,0,-75.2895,-31.0284,-21.5365,-109.639,-93.8171,-84.3204,-115.359,-178.143 0|0:26:18,3,3,1:18:715:3,3,1:115,120,39:-4.46986,-0.457466,-58.4157,0,-49.4338,-57.966,-6.68305,-56.1133,-55.6635,-65.2476 0|0:53:29,5,13,6:29:1147:5,13,6:190,515,241:-33.6578,-26.8121,-119.698,0,-78.818,-90.4818,-22.5256,-101.343,-74.5345,-115.114 dDocent_Contig_80 20 . G A 3700.4 . AB=0.53617;ABP=5.68075;AC=3;AF=0.5;AN=6;AO=126;CIGAR=1X;DP=235;DPB=235;DPRA=0;EPP=276.616;EPPR=239.701;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=4951;QR=4260;RO=109;RPL=0;RPP=276.616;RPPR=239.701;RPR=126;RUN=1;SAF=126;SAP=276.616;SAR=0;SRF=109;SRP=239.701;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:144:60,84:60:2380:84:3285:-252.385,0,-171.014 0/1:33:23,10:23:859:10:399:-26.3348,0,-67.6677 0/1:58:26,32:26:1021:32:1267:-96.8425,0,-74.7301 dDocent_Contig_82 41 . A G 398.268 . AB=0.162162;ABP=149.731;AC=1;AF=0.166667;AN=6;AO=27;CIGAR=1X;DP=214;DPB=214;DPRA=3.78;EPP=61.6401;EPPR=389.719;GTI=0;LEN=1;MEANALT=1.5;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=0.989247;PAO=0;PQA=0;PQR=0;PRO=0;QA=1074;QR=7085;RO=186;RPL=0;RPP=61.6401;RPPR=406.904;RPR=27;RUN=1;SAF=27;SAP=61.6401;SAR=0;SRF=184;SRP=389.719;SRR=2;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:148:123,24:123:4657:24:952:-41.3496,0,-374.49 0/0:25:25,0:25:951:0:0:0,-7.52575,-85.8957 0/0:41:38,3:38:1477:3:122:0,-0.969737,-121.819 dDocent_Contig_83 7 . T C 2766.05 . AB=0.510309;ABP=3.18939;AC=3;AF=0.5;AN=6;AO=99;CIGAR=1X3M1X;DP=194;DPB=194;DPRA=0;EPP=217.986;EPPR=209.3;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=3774;QR=3662;RO=95;RPL=0;RPP=217.986;RPPR=209.3;RPR=99;RUN=1;SAF=99;SAP=217.986;SAR=0;SRF=95;SRP=209.3;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|1:103:51,52:51:1965:52:1978:-147.253,0,-146.083 0|1:25:18,7:18:690:7:261:-16.3212,0,-54.9069 0|1:66:26,40:26:1007:40:1535:-118.554,0,-71.0724 dDocent_Contig_85 15 . T G 4497.34 . AB=0.0668058;ABP=1564.52;AC=3;AF=0.5;AN=6;AO=64;CIGAR=2M2X3M1X3M;DP=958;DPB=957.727;DPRA=0;EPP=141.985;EPPR=491.592;GTI=0;LEN=1;MEANALT=29.6667;MQM=55.1719;MQMR=60;NS=3;NUMALT=4;ODDS=0;PAIRED=0.984375;PAIREDR=0.982222;PAO=0;PQA=0;PQR=0;PRO=0;QA=2471;QR=8679;RO=225;RPL=0;RPP=141.985;RPPR=491.592;RPR=64;RUN=1;SAF=64;SAP=141.985;SAR=0;SRF=225;SRP=491.592;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|1:556:148,88,43,38,51:148:5700:88,43,38,51:3415,1633,1457,1829:-235.745,0,-441.503,-146.397,-334.093,-601.445,-161.072,-348.768,-495.165,-617.625,-131.141,-318.836,-465.233,-479.908,-583.78 0|1:142:28,25,10,20,12:28:1087:25,10,20,12:952,382,783,455:-69.5453,0,-81.7905,-46.6311,-57.9734,-132.937,-13.7183,-25.0609,-71.692,-97.0144,-40.6682,-52.0105,-98.6414,-65.729,-126.372 0|1:260:49,52,25,6,33:49:1892:52,25,6,33:2006,972,231,1189:-149.966,0,-139.732,-84.8397,-75.5083,-232.699,-146.063,-136.732,-221.571,-299.642,-67.7079,-58.3766,-143.216,-204.438,-213.158 dDocent_Contig_86 7 . T A 313.217 . AB=0.393939;ABP=6.23461;AC=3;AF=0.5;AN=6;AO=13;CIGAR=1X;DP=33;DPB=33;DPRA=0;EPP=31.2394;EPPR=46.4397;GTI=0;LEN=1;MEANALT=1;MQM=57.9231;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=0.615385;PAIREDR=0.9;PAO=0;PQA=0;PQR=0;PRO=0;QA=496;QR=735;RO=20;RPL=0;RPP=31.2394;RPPR=46.4397;RPR=13;RUN=1;SAF=13;SAP=31.2394;SAR=0;SRF=20;SRP=46.4397;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:12:5,7:5:192:7:270:-21.0532,0,-14.0376 0/1:10:9,1:9:322:1:40:-0.210727,0,-26.3079 0/1:11:6,5:6:221:5:186:-13.789,0,-16.9344 dDocent_Contig_87 107 . N C 57.0024 . AB=0;ABP=0;AC=2;AF=1;AN=2;AO=2;CIGAR=1X;DP=2;DPB=2;DPRA=0;EPP=7.35324;EPPR=0;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=0;NS=1;NUMALT=1;ODDS=5.99146;PAIRED=1;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=60;QR=0;RO=0;RPL=0;RPP=7.35324;RPPR=0;RPR=2;RUN=1;SAF=0;SAP=7.35324;SAR=2;SRF=0;SRP=0;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL ./.:.:.:.:.:.:.:. 1/1:2:0,2:0:0:2:60:-5.69915,-0.60206,0 ./.:.:.:.:.:.:.:. dDocent_Contig_88 28 . A G 132.934 . AB=0.166667;ABP=55.1256;AC=2;AF=0.333333;AN=6;AO=9;CIGAR=1X;DP=61;DPB=61;DPRA=3.85714;EPP=5.18177;EPPR=115.927;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=3.46945e-18;PAIRED=0;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=359;QR=2095;RO=52;RPL=0;RPP=22.5536;RPPR=115.927;RPR=9;RUN=1;SAF=3;SAP=5.18177;SAR=6;SRF=52;SRP=115.927;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:35:31,4:31:1251:4:157:-3.97224,0,-102.322 0/0:7:7,0:7:279:0:0:0,-2.10721,-25.4806 0/1:19:14,5:14:565:5:202:-12.8425,0,-45.4729 dDocent_Contig_89 107 . N T 93.3091 . AB=0;ABP=0;AC=2;AF=1;AN=2;AO=3;CIGAR=1X;DP=3;DPB=3;DPRA=0;EPP=9.52472;EPPR=0;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=0;NS=1;NUMALT=1;ODDS=6.68461;PAIRED=1;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=100;QR=0;RO=0;RPL=0;RPP=9.52472;RPPR=0;RPR=3;RUN=1;SAF=0;SAP=9.52472;SAR=3;SRF=0;SRP=0;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL ./.:.:.:.:.:.:.:. ./.:.:.:.:.:.:.:. 1/1:3:0,3:0:0:3:100:-9.33037,-0.90309,0 dDocent_Contig_90 83 . A G 187.735 . AB=0.583333;ABP=3.73412;AC=1;AF=0.166667;AN=6;AO=7;CIGAR=1X;DP=36;DPB=36;DPRA=1;EPP=18.2106;EPPR=65.983;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=265;QR=1086;RO=29;RPL=7;RPP=18.2106;RPPR=65.983;RPR=0;RUN=1;SAF=7;SAP=18.2106;SAR=0;SRF=29;SRP=65.983;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:11:11,0:11:427:0:0:0,-3.31133,-38.785 0/1:12:5,7:5:188:7:265:-20.5974,0,-13.6712 0/0:13:13,0:13:471:0:0:0,-3.91339,-42.7291 dDocent_Contig_91 7 . T C 4283.42 . AB=0.289169;ABP=737.342;AC=3;AF=0.5;AN=6;AO=550;CIGAR=1X;DP=1902;DPB=1902;DPRA=0;EPP=1197.32;EPPR=2799.87;GTI=0;LEN=1;MEANALT=3;MQM=21.24;MQMR=43.493;NS=3;NUMALT=1;ODDS=0;PAIRED=0.983636;PAIREDR=0.989907;PAO=0;PQA=0;PQR=0;PRO=0;QA=21021;QR=48747;RO=1288;RPL=0;RPP=1197.32;RPPR=2799.87;RPR=550;RUN=1;SAF=550;SAP=1197.32;SAR=0;SRF=1288;SRP=2799.87;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:661:460,181:460:17524:181:6974:-127.172,0,-1150.71 0/1:939:619,289:619:23227:289:10960:-277.725,0,-1534.38 0/1:302:209,80:209:7996:80:3087:-28.9685,0,-524.915 dDocent_Contig_94 7 . T C 781.159 . AB=0.192195;ABP=846.518;AC=1;AF=0.166667;AN=6;AO=311;CIGAR=1X;DP=2158;DPB=2158;DPRA=0;EPP=678.338;EPPR=3939.89;GTI=0;LEN=1;MEANALT=2.33333;MQM=23.7749;MQMR=44.1622;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=0.985659;PAO=0;PQA=0;PQR=0;PRO=0;QA=11834;QR=68902;RO=1813;RPL=0;RPP=678.338;RPPR=3939.89;RPR=311;RUN=1;SAF=311;SAP=678.338;SAR=0;SRF=1813;SRP=3939.89;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:760:668,85:668:25563:85:3268:0,-56.1644,-1870.06 0/1:1025:801,197:801:30241:197:7465:-79.9398,0,-2148.26 0/0:373:344,29:344:13098:29:1101:0,-51.6891,-992.433 dDocent_Contig_95 98 . N A 5746.37 . AB=0;ABP=0;AC=6;AF=1;AN=6;AO=212;CIGAR=1X;DP=212;DPB=212;DPRA=0;EPP=463.362;EPPR=0;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=0;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=6371;QR=0;RO=0;RPL=212;RPP=463.362;RPPR=0;RPR=0;RUN=1;SAF=212;SAP=463.362;SAR=0;SRF=0;SRP=0;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 1/1:122:0,122:0:0:122:3673:-330.792,-36.7257,0 1/1:36:0,36:0:0:36:1062:-95.8571,-10.8371,0 1/1:54:0,54:0:0:54:1636:-147.51,-16.2556,0 dDocent_Contig_99 27 . G T 744.63 . AB=0.24812;ABP=76.3016;AC=1;AF=0.166667;AN=6;AO=35;CIGAR=1X2M1X;DP=208;DPB=208;DPRA=5.27778;EPP=79.0118;EPPR=376.504;GTI=0;LEN=1;MEANALT=1.5;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=0.971429;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=1365;QR=6650;RO=172;RPL=0;RPP=79.0118;RPPR=376.504;RPR=35;RUN=1;SAF=35;SAP=79.0118;SAR=0;SRF=172;SRP=376.504;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|1:133:100,33:100:3886:33:1286:-75.9859,0,-309.772 0|0:18:18,0:18:694:0:0:0,-5.41854,-62.7923 0|0:57:54,2:54:2070:2:79:0,-9.73811,-179.039 dDocent_Contig_100 50 . T G 3576.4 . AB=0.78;ABP=71.1077;AC=4;AF=0.666667;AN=6;AO=109;CIGAR=1X;DP=131;DPB=131;DPRA=0;EPP=239.701;EPPR=50.7827;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=0.889908;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=4339;QR=879;RO=22;RPL=109;RPP=239.701;RPPR=50.7827;RPR=0;RUN=1;SAF=109;SAP=239.701;SAR=0;SRF=22;SRP=50.7827;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:62:13,49:13:518:49:1947:-156.771,0,-28.3028 0/1:38:9,29:9:361:29:1168:-93.9614,0,-21.4142 1/1:31:0,31:0:0:31:1224:-110.431,-9.33193,0 dDocent_Contig_103 76 . T A 10908.6 . AB=0.688963;ABP=188.479;AC=3;AF=0.5;AN=6;AO=412;CIGAR=1X;DP=598;DPB=598;DPRA=0;EPP=897.657;EPPR=402.561;GTI=0;LEN=1;MEANALT=1.66667;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=0.995146;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=14177;QR=6499;RO=184;RPL=412;RPP=897.657;RPPR=402.561;RPR=0;RUN=1;SAF=412;SAP=897.657;SAR=0;SRF=184;SRP=402.561;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:369:115,253:115:4085:253:8669:-669.148,0,-256.71 0/1:79:11,68:11:393:68:2395:-192.025,0,-11.9272 0/1:150:58,91:58:2021:91:3113:-235.208,0,-136.959 dDocent_Contig_105 43 . A G 60.098 . AB=0.166667;ABP=26.1727;AC=1;AF=0.166667;AN=6;AO=4;CIGAR=1X;DP=78;DPB=78;DPRA=0.888889;EPP=11.6962;EPPR=163.699;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=0;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=163;QR=2961;RO=74;RPL=0;RPP=11.6962;RPPR=163.699;RPR=4;RUN=1;SAF=4;SAP=11.6962;SAR=0;SRF=74;SRP=163.699;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:42:42,0:42:1678:0:0:0,-12.6433,-151.249 0/0:12:12,0:12:487:0:0:0,-3.61236,-44.1811 0/1:24:20,4:20:796:4:163:-7.83371,0,-64.7293 dDocent_Contig_106 133 . T C 1753.75 . AB=0.168067;ABP=116.894;AC=1;AF=0.166667;AN=6;AO=20;CIGAR=1X1M1X;DP=119;DPB=119;DPRA=0;EPP=46.4397;EPPR=96.3836;GTI=0;LEN=1;MEANALT=2;MQM=60;MQMR=60;NS=3;NUMALT=2;ODDS=1.38778e-17;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=788;QR=1460;RO=43;RPL=0;RPP=46.4397;RPPR=96.3836;RPR=20;RUN=1;SAF=0;SAP=46.4397;SAR=20;SRF=0;SRP=96.3836;SRR=43;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|0:66:26,9,31:26:885:9,31:354,1216:-92.1572,-70.8638,-139.928,0,-42.6238,-62.4254 0|0:18:9,1,8:9:309:1,8:41,322:-23.8222,-23.1466,-47.9055,0,-21.6408,-22.6232 1|0:35:8,10,17:8:266:10,17:393,685:-64.918,-35.004,-53.4951,-10.8623,0,-27.2418 dDocent_Contig_107 79 . C T 167.1 . AB=0.212766;ABP=36.6912;AC=1;AF=0.166667;AN=6;AO=12;CIGAR=1X;DP=124;DPB=124;DPRA=1.22222;EPP=29.068;EPPR=246.215;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=428;QR=3941;RO=112;RPL=12;RPP=29.068;RPPR=246.215;RPR=0;RUN=1;SAF=12;SAP=29.068;SAR=0;SRF=112;SRP=246.215;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:47:37,10:37:1321:10:356:-18.2328,0,-105.044 0/0:36:36,0:36:1261:0:0:0,-10.8371,-113.793 0/0:41:39,2:39:1359:2:72:0,-5.50551,-115.775 dDocent_Contig_108 35 . A T 2336.67 . AB=0.292135;ABP=103.215;AC=3;AF=0.5;AN=6;AO=78;CIGAR=15M1X1M1X1M1X;DP=267;DPB=195.05;DPRA=0;EPP=172.385;EPPR=124.613;GTI=0;LEN=1;MEANALT=5;MQM=60;MQMR=60;NS=3;NUMALT=3;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=3109;QR=2198;RO=56;RPL=0;RPP=172.385;RPPR=124.613;RPR=78;RUN=1;SAF=78;SAP=172.385;SAR=0;SRF=56;SRP=124.613;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|1:153:31,26,12,7:31:1220:26,12,7:1046,461,274:-76.8752,0,-92.535,-48.368,-62.5224,-145.117,-63.6786,-77.8331,-126.2,-161.933 0|1:67:13,36,3,0:13:512:36,3,0:1424,102,0:-113.29,0,-31.2917,-108.936,-33.863,-150.155,-117.204,-42.1288,-151.058,-159.326 0|1:47:12,16,1,1:12:466:16,1,1:639,27,40:-49.0249,0,-33.475,-50.512,-36.1665,-88.499,-49.3419,-34.9959,-85.5048,-87.3299 dDocent_Contig_109 24 . T C 131.37 . AB=0.25;ABP=16.0391;AC=1;AF=0.166667;AN=6;AO=6;CIGAR=1X;DP=50;DPB=50;DPRA=1.84615;EPP=16.0391;EPPR=98.5551;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=239;QR=1764;RO=44;RPL=0;RPP=16.0391;RPPR=98.5551;RPR=6;RUN=1;SAF=6;SAP=16.0391;SAR=0;SRF=44;SRP=98.5551;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:24:18,6:18:718:6:239:-14.6599,0,-57.7206 0/0:9:9,0:9:363:0:0:0,-2.70927,-33.0337 0/0:17:17,0:17:683:0:0:0,-5.11751,-61.7972 dDocent_Contig_110 11 . A G 65.2955 . AB=0.151515;ABP=37.8197;AC=1;AF=0.166667;AN=6;AO=5;CIGAR=1X;DP=61;DPB=61;DPRA=2.35714;EPP=13.8677;EPPR=124.613;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=199;QR=2222;RO=56;RPL=0;RPP=13.8677;RPPR=124.613;RPR=5;RUN=1;SAF=5;SAP=13.8677;SAR=0;SRF=56;SRP=124.613;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:20:20,0:20:803:0:0:0,-6.0206,-72.5878 0/0:8:8,0:8:317:0:0:0,-2.40824,-28.8963 0/1:33:28,5:28:1102:5:199:-8.35345,0,-89.5295 dDocent_Contig_111 21 . A C 127.788 . AB=0.230769;ABP=19.3799;AC=1;AF=0.166667;AN=6;AO=11;CIGAR=1X;DP=106;DPB=106;DPRA=3.91667;EPP=26.8965;EPPR=209.3;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=448;QR=3776;RO=95;RPL=0;RPP=26.8965;RPPR=209.3;RPR=11;RUN=1;SAF=11;SAP=26.8965;SAR=0;SRF=95;SRP=209.3;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:68:63,5:63:2508:5:203:0,-1.81719,-207.201 0/0:12:12,0:12:487:0:0:0,-3.61236,-44.1815 0/1:26:20,6:20:781:6:245:-14.6027,0,-62.7808 dDocent_Contig_112 39 . T C 2597.8 . AB=0.563291;ABP=8.5077;AC=3;AF=0.5;AN=6;AO=89;CIGAR=1X;DP=158;DPB=158;DPRA=0;EPP=196.271;EPPR=152.842;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=3467;QR=2545;RO=69;RPL=0;RPP=196.271;RPPR=152.842;RPR=89;RUN=1;SAF=89;SAP=196.271;SAR=0;SRF=69;SRP=152.842;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:93:38,55:38:1393:55:2128:-163.711,0,-97.6497 0/1:18:3,15:3:117:15:587:-47.7443,0,-5.49167 0/1:47:28,19:28:1035:19:752:-53.8478,0,-79.3088 dDocent_Contig_113 21 . G A 85.5757 . AB=0.126761;ABP=88.9211;AC=2;AF=0.333333;AN=6;AO=9;CIGAR=1X1M;DP=80;DPB=80;DPRA=3.94444;EPP=22.5536;EPPR=152.842;GTI=0;LEN=1;MEANALT=1.5;MQM=60;MQMR=60;NS=3;NUMALT=2;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=360;QR=2710;RO=69;RPL=0;RPP=22.5536;RPPR=152.842;RPR=9;RUN=1;SAF=9;SAP=22.5536;SAR=0;SRF=69;SRP=152.842;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|1:62:55,0,7:55:2157:0,7:0,279:-6.81641,-23.3731,-200.732,0,-177.756,-175.649 0|0:9:9,0,0:9:354:0,0:0,0:0,-2.70927,-32.219,-2.70927,-32.219,-32.219 0|1:9:5,2,2:5:199:2,2:79,81:-5.17896,-0.188103,-15.9664,0,-9.88733,-15.7854 dDocent_Contig_114 19 . C A 551.582 . AB=0.247312;ABP=54.5886;AC=1;AF=0.166667;AN=6;AO=25;CIGAR=1X;DP=178;DPB=178;DPRA=3.36957;EPP=57.2971;EPPR=328.731;GTI=0;LEN=1;MEANALT=1.5;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=6.93889e-18;PAIRED=0.96;PAIREDR=0.973333;PAO=0;PQA=0;PQR=0;PRO=0;QA=1012;QR=6055;RO=150;RPL=0;RPP=57.2971;RPPR=328.731;RPR=25;RUN=1;SAF=25;SAP=57.2971;SAR=0;SRF=150;SRP=328.731;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:93:67,23:67:2702:23:932:-56.6811,0,-215.787 0/0:23:23,0:23:927:0:0:0,-6.92369,-83.7333 0/0:62:60,2:60:2426:2:80:0,-11.0721,-210.883 dDocent_Contig_115 74 . C A 1135.12 . AB=0.30137;ABP=28.0269;AC=5;AF=0.833333;AN=6;AO=22;CIGAR=1X4M;DP=73;DPB=73;DPRA=0;EPP=50.7827;EPPR=48.6112;GTI=0;LEN=1;MEANALT=2;MQM=60;MQMR=60;NS=3;NUMALT=2;ODDS=1.38778e-17;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=861;QR=812;RO=21;RPL=22;RPP=50.7827;RPPR=48.6112;RPR=0;RUN=1;SAF=22;SAP=50.7827;SAR=0;SRF=21;SRP=48.6112;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 1|1:26:6,14,6:6:236:14,6:540,239:-42.7979,-0.272523,-15.4691,-24.9192,0,-42.5288 1|1:22:3,12,7:3:118:12,7:477,265:-50.3815,-11.9997,-18.0984,-29.5705,0,-37.1691 0|1:25:12,4,9:12:458:4,9:153,357:-25.7848,-16.8462,-53.209,0,-25.0193,-34.8656 dDocent_Contig_116 65 . G A 242.559 . AB=0.142857;ABP=142.605;AC=2;AF=0.333333;AN=6;AO=33;CIGAR=1X;DP=378;DPB=378;DPRA=0;EPP=74.6689;EPPR=752.168;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=1322;QR=13485;RO=345;RPL=33;RPP=74.6689;RPPR=752.168;RPR=0;RUN=1;SAF=33;SAP=74.6689;SAR=0;SRF=345;SRP=752.168;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:252:237,15:237:9307:15:600:0,-21.5218,-782.765 0/1:53:47,6:47:1782:6:243:-6.29301,0,-144.651 0/1:73:61,12:61:2396:12:479:-21.4857,0,-193.822 dDocent_Contig_117 14 . C G 2216.13 . AB=0.363229;ABP=39.2437;AC=3;AF=0.5;AN=6;AO=81;CIGAR=1X;DP=223;DPB=223;DPRA=0;EPP=178.9;EPPR=311.359;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=3260;QR=5711;RO=142;RPL=0;RPP=178.9;RPPR=311.359;RPR=81;RUN=1;SAF=81;SAP=178.9;SAR=0;SRF=142;SRP=311.359;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:153:83,70:83:3337:70:2811:-207.036,0,-254.31 0/1:15:12,3:12:475:3:122:-6.85704,0,-38.5839 0/1:55:47,8:47:1899:8:327:-13.2435,0,-154.553 dDocent_Contig_118 161 . T C 496.046 . AB=0.1261;ABP=417.087;AC=2;AF=0.333333;AN=6;AO=43;CIGAR=1M7D1M1X;DP=374;DPB=343.2;DPRA=5.16667;EPP=96.3836;EPPR=697.881;GTI=0;LEN=1;MEANALT=6.5;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=1694;QR=12187;RO=320;RPL=0;RPP=96.3836;RPPR=697.881;RPR=43;RUN=1;SAF=0;SAP=96.3836;SAR=43;SRF=0;SRP=697.881;SRR=320;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|1:254:216,32:216:8188:32:1260:-38.756,0,-661.788 0|0:33:33,0:33:1261:0:0:0,-9.93399,-113.776 0|1:87:71,11:71:2738:11:434:-14.3715,0,-221.558 dDocent_Contig_120 136 . T G 198.745 . AB=0.210526;ABP=44.4969;AC=1;AF=0.166667;AN=6;AO=24;CIGAR=1X;DP=223;DPB=223;DPRA=0;EPP=55.1256;EPPR=435.133;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=827;QR=6901;RO=199;RPL=0;RPP=55.1256;RPPR=435.133;RPR=24;RUN=1;SAF=0;SAP=55.1256;SAR=24;SRF=0;SRP=435.133;SRR=199;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:95:89,6:89:3099:6:221:0,-8.35105,-258.879 0/0:71:65,6:65:2258:6:178:0,-5.06313,-187.169 0/1:57:45,12:45:1544:12:428:-21.6985,0,-122.084 dDocent_Contig_121 20 . C T 121.973 . AB=0.131579;ABP=92.6121;AC=1;AF=0.166667;AN=6;AO=15;CIGAR=1X;DP=308;DPB=308;DPRA=0;EPP=35.5824;EPPR=639.252;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=606;QR=11809;RO=293;RPL=0;RPP=35.5824;RPPR=639.252;RPR=15;RUN=1;SAF=15;SAP=35.5824;SAR=0;SRF=293;SRP=639.252;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:148:147,1:147:5920:1:40:0,-40.5568,-528.558 0/1:76:66,10:66:2661:10:406:-14.0213,0,-216.731 0/0:84:80,4:80:3228:4:160:0,-10.5031,-275.788 dDocent_Contig_122 122 . G A 256.593 . AB=0.44;ABP=3.79203;AC=2;AF=0.333333;AN=6;AO=11;CIGAR=1X;DP=39;DPB=39;DPRA=0.892857;EPP=26.8965;EPPR=63.8115;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=400;QR=1038;RO=28;RPL=0;RPP=26.8965;RPPR=63.8115;RPR=11;RUN=1;SAF=0;SAP=26.8965;SAR=11;SRF=0;SRP=63.8115;SRR=28;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:14:14,0:14:507:0:0:0,-4.21442,-45.9604 0/1:14:8,6:8:304:6:218:-15.7585,0,-23.5047 0/1:11:6,5:6:227:5:182:-13.4237,0,-17.4806 dDocent_Contig_123 134 . T G 225.733 . AB=0.234043;ABP=31.8863;AC=1;AF=0.166667;AN=6;AO=11;CIGAR=1X;DP=98;DPB=98;DPRA=1.84314;EPP=26.8965;EPPR=189.757;GTI=0;LEN=1;MEANALT=2;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=0.988372;PAO=0;PQA=0;PQR=0;PRO=0;QA=422;QR=3237;RO=86;RPL=0;RPP=26.8965;RPPR=189.757;RPR=11;RUN=1;SAF=0;SAP=26.8965;SAR=11;SRF=0;SRP=189.757;SRR=86;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:47:35,11:35:1293:11:422:-24.0962,0,-102.413 0/0:15:15,0:15:565:0:0:0,-4.51545,-51.1864 0/0:36:36,0:36:1379:0:0:0,-10.8371,-124.394 dDocent_Contig_124 107 . N C 775.167 . AB=0;ABP=0;AC=6;AF=1;AN=6;AO=25;CIGAR=1X;DP=25;DPB=25;DPRA=0;EPP=57.2971;EPPR=0;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=0;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=845;QR=0;RO=0;RPL=0;RPP=57.2971;RPPR=0;RPR=25;RUN=1;SAF=0;SAP=57.2971;SAR=25;SRF=0;SRP=0;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 1/1:9:0,9:0:0:9:302:-27.5062,-2.70927,0 1/1:2:0,2:0:0:2:68:-6.45788,-0.60206,0 1/1:14:0,14:0:0:14:475:-43.0751,-4.21442,0 dDocent_Contig_125 17 . A G 364.535 . AB=0.137255;ABP=236.167;AC=2;AF=0.333333;AN=6;AO=33;CIGAR=1X;DP=273;DPB=273;DPRA=0;EPP=74.6689;EPPR=524.164;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=1317;QR=9516;RO=240;RPL=0;RPP=74.6689;RPPR=524.164;RPR=33;RUN=1;SAF=33;SAP=74.6689;SAR=0;SRF=240;SRP=524.164;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:162:138,24:138:5500:24:960:-37.9332,0,-446.062 0/1:42:38,4:38:1505:4:153:-1.49624,0,-123.052 0/0:69:64,5:64:2511:5:204:0,-2.02704,-207.386 dDocent_Contig_126 10 . G A 63.9081 . AB=0.210526;ABP=16.8392;AC=2;AF=0.333333;AN=6;AO=4;CIGAR=1X1M1X;DP=40;DPB=40;DPRA=0.452381;EPP=11.6962;EPPR=81.1833;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=157;QR=1392;RO=36;RPL=0;RPP=11.6962;RPPR=81.1833;RPR=4;RUN=1;SAF=4;SAP=11.6962;SAR=0;SRF=36;SRP=81.1833;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|0:21:21,0:21:807:0:0:0,-6.32163,-72.9519 0|1:9:6,3:6:232:3:117:-8.20094,0,-18.5386 0|1:10:9,1:9:353:1:40:-0.985379,0,-29.1215 dDocent_Contig_127 73 . G A 206.237 . 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AB=0.166667;ABP=26.1727;AC=1;AF=0.166667;AN=6;AO=5;CIGAR=1X;DP=172;DPB=172;DPRA=0.887097;EPP=13.8677;EPPR=365.646;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=59.8922;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=0.976048;PAO=0;PQA=0;PQR=0;PRO=0;QA=202;QR=6635;RO=167;RPL=0;RPP=13.8677;RPPR=365.646;RPR=5;RUN=1;SAF=5;SAP=13.8677;SAR=0;SRF=167;SRP=365.646;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:86:85,1:85:3386:1:41:0,-21.794,-300.634 0/1:24:20,4:20:795:4:161:-7.65076,0,-64.6437 0/0:62:62,0:62:2454:0:0:0,-18.6639,-221.014 dDocent_Contig_129 8 . T A 1239.44 . AB=0.0247934;ABP=240.347;AC=0;AF=0;AN=6;AO=3;CIGAR=1X1M1X3M1X;DP=304;DPB=304;DPRA=0;EPP=9.52472;EPPR=513.306;GTI=0;LEN=1;MEANALT=3.5;MQM=60;MQMR=60;NS=3;NUMALT=2;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=117;QR=9219;RO=235;RPL=0;RPP=9.52472;RPPR=513.306;RPR=3;RUN=1;SAF=3;SAP=9.52472;SAR=0;SRF=235;SRP=513.306;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|0:183:137,0,45:137:5360:0,45:0,1782:-105.419,-146.66,-587.355,0,-440.699,-427.153 0|0:36:29,2,3:29:1139:2,3:79,112:-0.476027,-2.67671,-95.839,0,-87.2724,-92.8712 0|0:85:69,1,14:69:2720:1,14:38,523:-22.0432,-39.6973,-263.2,0,-220.689,-219.591 dDocent_Contig_130 28 . C A 3913.63 . 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AB=0.83737;ABP=288.72;AC=4;AF=0.666667;AN=6;AO=262;CIGAR=1X;DP=310;DPB=310;DPRA=0;EPP=571.936;EPPR=107.241;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=9125;QR=1695;RO=48;RPL=262;RPP=571.936;RPPR=107.241;RPR=0;RUN=1;SAF=262;SAP=571.936;SAR=0;SRF=48;SRP=107.241;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:222:37,185:37:1314:185:6495:-517.824,0,-51.7337 1/1:21:1,20:1:36:20:693:-59.0937,-2.72336,0 0/1:67:10,57:10:345:57:1937:-154.438,0,-11.2145 dDocent_Contig_132 10 . G A 3055.27 . AB=0.390681;ABP=31.971;AC=3;AF=0.5;AN=6;AO=109;CIGAR=1X;DP=279;DPB=279;DPRA=0;EPP=239.701;EPPR=372.161;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=0.994118;PAO=0;PQA=0;PQR=0;PRO=0;QA=4381;QR=6788;RO=170;RPL=0;RPP=239.701;RPPR=372.161;RPR=109;RUN=1;SAF=109;SAP=239.701;SAR=0;SRF=170;SRP=372.161;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:202:115,87:115:4602:87:3491:-253.419,0,-353.288 0/1:16:10,6:10:401:6:242:-17.3405,0,-31.6334 0/1:61:45,16:45:1785:16:648:-40.2907,0,-142.5 dDocent_Contig_133 69 . C A 38.6357 . AB=0.137931;ABP=36.0317;AC=1;AF=0.166667;AN=6;AO=6;CIGAR=1X;DP=101;DPB=101;DPRA=0;EPP=16.0391;EPPR=209.3;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=235;QR=3512;RO=95;RPL=6;RPP=16.0391;RPPR=209.3;RPR=0;RUN=1;SAF=6;SAP=16.0391;SAR=0;SRF=95;SRP=209.3;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:46:45,1:45:1621:1:38:0,-10.0501,-142.334 0/0:26:25,1:25:936:1:41:0,-3.73221,-80.4391 0/1:29:25,4:25:955:4:156:-5.68742,0,-77.5338 dDocent_Contig_135 116 . A T 384.463 . 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AB=0.253425;ABP=80.1124;AC=3;AF=0.5;AN=6;AO=37;CIGAR=1X;DP=146;DPB=146;DPRA=0;EPP=83.3548;EPPR=239.701;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=1410;QR=4176;RO=109;RPL=0;RPP=83.3548;RPPR=239.701;RPR=37;RUN=1;SAF=37;SAP=83.3548;SAR=0;SRF=109;SRP=239.701;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:69:49,20:49:1896:20:766:-48.4969,0,-150.111 0/1:33:26,7:26:971:7:269:-14.6402,0,-77.7643 0/1:44:34,10:34:1309:10:375:-20.8552,0,-104.853 dDocent_Contig_137 10 . A G 2448.95 . 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A G 1070.51 . AB=0.422222;ABP=7.73928;AC=3;AF=0.5;AN=6;AO=38;CIGAR=1X;DP=90;DPB=90;DPRA=0;EPP=85.5263;EPPR=111.584;GTI=0;LEN=1;MEANALT=1.33333;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=1538;QR=1986;RO=50;RPL=0;RPP=85.5263;RPPR=111.584;RPR=38;RUN=1;SAF=38;SAP=85.5263;SAR=0;SRF=50;SRP=111.584;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:52:39,11:39:1553:11:448:-25.2196,0,-124.556 0/1:11:2,9:2:72:9:362:-29.6321,0,-3.52299 0/1:27:9,18:9:361:18:728:-57.7176,0,-24.7252 dDocent_Contig_140 98 . N A 170.111 . AB=0;ABP=0;AC=6;AF=1;AN=6;AO=5;CIGAR=1X;DP=5;DPB=5;DPRA=0;EPP=13.8677;EPPR=0;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=0;NS=3;NUMALT=1;ODDS=1.69407e-21;PAIRED=1;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=171;QR=0;RO=0;RPL=5;RPP=13.8677;RPPR=0;RPR=0;RUN=1;SAF=5;SAP=13.8677;SAR=0;SRF=0;SRP=0;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 1/1:3:0,3:0:0:3:103:-9.60997,-0.90309,0 1/1:1:0,1:0:0:1:33:-3.29913,-0.30103,0 1/1:1:0,1:0:0:1:35:-3.49863,-0.30103,0 dDocent_Contig_141 22 . C T 31.9287 . AB=0.121212;ABP=44.1367;AC=1;AF=0.166667;AN=6;AO=5;CIGAR=1X;DP=83;DPB=83;DPRA=1.16;EPP=13.8677;EPPR=170.214;GTI=0;LEN=1;MEANALT=1.5;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=187;QR=3093;RO=77;RPL=0;RPP=13.8677;RPPR=170.214;RPR=5;RUN=1;SAF=5;SAP=13.8677;SAR=0;SRF=77;SRP=170.214;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:25:24,1:24:969:1:24:0,-5.12586,-85.1084 0/1:33:28,4:28:1134:4:163:-5.01651,0,-92.2984 0/0:25:25,0:25:990:0:0:0,-7.52575,-89.3937 dDocent_Contig_142 107 . N A 66.4848 . AB=0;ABP=0;AC=2;AF=1;AN=2;AO=2;CIGAR=1X;DP=2;DPB=2;DPRA=0;EPP=7.35324;EPPR=0;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=0;NS=1;NUMALT=1;ODDS=5.99146;PAIRED=1;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=70;QR=0;RO=0;RPL=0;RPP=7.35324;RPPR=0;RPR=2;RUN=1;SAF=0;SAP=7.35324;SAR=2;SRF=0;SRP=0;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 1/1:2:0,2:0:0:2:70:-6.6474,-0.60206,0 ./.:.:.:.:.:.:.:. ./.:.:.:.:.:.:.:. dDocent_Contig_143 30 . G A 1851.51 . AB=0.305439;ABP=81.5922;AC=3;AF=0.5;AN=6;AO=73;CIGAR=1X;DP=239;DPB=239;DPRA=0;EPP=161.528;EPPR=363.475;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=2908;QR=6613;RO=166;RPL=0;RPP=161.528;RPPR=363.475;RPR=73;RUN=1;SAF=73;SAP=161.528;SAR=0;SRF=166;SRP=363.475;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:147:104,43:104:4158:43:1707:-109.604,0,-329.927 0/1:41:25,16:25:1003:16:639:-45.4999,0,-78.2249 0/1:51:37,14:37:1452:14:562:-35.5698,0,-115.569 dDocent_Contig_144 162 . G A 1359.28 . AB=0.625;ABP=12.7819;AC=3;AF=0.5;AN=6;AO=45;CIGAR=1X;DP=72;DPB=72;DPRA=0;EPP=100.727;EPPR=61.6401;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=1781;QR=1052;RO=27;RPL=45;RPP=100.727;RPPR=61.6401;RPR=0;RUN=1;SAF=0;SAP=100.727;SAR=45;SRF=0;SRP=61.6401;SRR=27;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:48:8,40:8:319:40:1587:-128.62,0,-14.6278 0/1:13:12,1:12:460:1:41:-0.181177,0,-37.828 0/1:11:7,4:7:273:4:153:-10.8286,0,-21.6215 dDocent_Contig_145 54 . C T 46.3563 . AB=0.15625;ABP=35.8538;AC=1;AF=0.166667;AN=6;AO=17;CIGAR=1X;DP=214;DPB=214;DPRA=0;EPP=39.9253;EPPR=430.79;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=6.93889e-18;PAIRED=1;PAIREDR=0.984772;PAO=0;PQA=0;PQR=0;PRO=0;QA=594;QR=7326;RO=197;RPL=17;RPP=39.9253;RPPR=430.79;RPR=0;RUN=1;SAF=17;SAP=39.9253;SAR=0;SRF=197;SRP=430.79;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:127:119,8:119:4411:8:281:0,-12.6047,-371.415 0/1:32:27,5:27:1009:5:175:-6.45953,0,-81.4732 0/0:55:51,4:51:1906:4:138:0,-3.79648,-159.013 dDocent_Contig_147 93 . A T 683.96 . AB=0.23494;ABP=104.311;AC=2;AF=0.333333;AN=6;AO=39;CIGAR=1X;DP=203;DPB=203;DPRA=2.24324;EPP=87.6977;EPPR=352.617;GTI=0;LEN=1;MEANALT=1.5;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=1344;QR=5481;RO=161;RPL=39;RPP=87.6977;RPPR=352.617;RPR=0;RUN=1;SAF=39;SAP=87.6977;SAR=0;SRF=161;SRP=352.617;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:153:114,37:114:3862:37:1275:-69.2476,0,-301.991 0/1:13:11,2:11:369:2:69:-2.63927,0,-29.6209 0/0:37:36,0:36:1250:0:0:0,-10.8371,-112.455 dDocent_Contig_148 86 . C A 83.0723 . AB=0.26087;ABP=14.4341;AC=2;AF=0.333333;AN=6;AO=6;CIGAR=2X;DP=27;DPB=27;DPRA=2.875;EPP=16.0391;EPPR=48.6112;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=201;QR=730;RO=21;RPL=6;RPP=16.0391;RPPR=48.6112;RPR=0;RUN=1;SAF=6;SAP=16.0391;SAR=0;SRF=21;SRP=48.6112;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|1:14:11,3:11:385:3:105:-5.58174,0,-30.7719 0|1:9:6,3:6:209:3:96:-6.24823,0,-16.4418 0|0:4:4,0:4:136:0:0:0,-1.20412,-12.5757 dDocent_Contig_149 166 . C A 36.8033 . AB=0.128205;ABP=49.8362;AC=2;AF=0.333333;AN=6;AO=7;CIGAR=1X;DP=124;DPB=124;DPRA=0;EPP=18.2106;EPPR=257.073;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=256;QR=4662;RO=117;RPL=7;RPP=18.2106;RPPR=257.073;RPR=0;RUN=1;SAF=0;SAP=18.2106;SAR=7;SRF=0;SRP=257.073;SRR=117;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:85:83,2:83:3312:2:59:0,-19.9877,-292.521 0/1:9:8,1:8:308:1:40:-1.28641,0,-25.3644 0/1:30:26,4:26:1042:4:157:-5.47702,0,-85.0385 dDocent_Contig_160 98 . N C 101.984 . AB=0;ABP=0;AC=4;AF=1;AN=4;AO=6;CIGAR=3X;DP=6;DPB=7.33333;DPRA=0;EPP=16.0391;EPPR=0;GTI=0;LEN=1;MEANALT=1;MQM=20.1667;MQMR=0;NS=2;NUMALT=1;ODDS=0;PAIRED=0;PAIREDR=0;PAO=2;PQA=63;PQR=0;PRO=0;QA=224;QR=0;RO=0;RPL=6;RPP=16.0391;RPPR=0;RPR=0;RUN=1;SAF=0;SAP=16.0391;SAR=6;SRF=0;SRP=0;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 1|1:3:0,3:0:0:3:113:-7.87701,-0.90309,0 .:.:.:.:.:.:.:. 1|1:3:0,3:0:0:3:111:-2.01778,-0.90309,0 dDocent_Contig_183 15 . G A 562.018 . AB=0.141892;ABP=332.722;AC=1;AF=0.166667;AN=6;AO=63;CIGAR=1X;DP=560;DPB=560;DPRA=0;EPP=72.8076;EPPR=1049.73;GTI=0;LEN=1;MEANALT=2.33333;MQM=58.873;MQMR=59.9673;NS=3;NUMALT=1;ODDS=0;PAIRED=0.68254;PAIREDR=0.585714;PAO=0;PQA=0;PQR=0;PRO=0;QA=2455;QR=19492;RO=490;RPL=0;RPP=139.813;RPPR=1067.03;RPR=63;RUN=1;SAF=54;SAP=72.8076;SAR=9;SRF=488;SRP=1049.73;SRR=2;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:296:251,42:251:10047:42:1624:-57.7246,0,-814.989 0/0:73:65,5:65:2588:5:203:0,-2.82083,-214.401 0/0:191:174,16:174:6857:16:628:0,-1.29816,-560.459 dDocent_Contig_184 21 . A G 1032.04 . AB=0.265432;ABP=80.4327;AC=2;AF=0.333333;AN=6;AO=44;CIGAR=1X;DP=182;DPB=182;DPRA=0;EPP=98.5551;EPPR=302.673;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=0.978261;PAO=0;PQA=0;PQR=0;PRO=0;QA=1759;QR=5463;RO=138;RPL=0;RPP=98.5551;RPPR=302.673;RPR=44;RUN=1;SAF=44;SAP=98.5551;SAR=0;SRF=138;SRP=302.673;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:131:92,39:92:3666:39:1570:-102.102,0,-290.533 0/0:20:19,1:19:754:1:38:0,-2.22333,-64.3849 0/1:31:27,4:27:1043:4:151:-4.62456,0,-84.829 dDocent_Contig_185 7 . T A 540.615 . AB=0.173469;ABP=184.528;AC=2;AF=0.333333;AN=6;AO=36;CIGAR=1X;DP=260;DPB=260;DPRA=0;EPP=81.1833;EPPR=489.42;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=0.995536;PAO=0;PQA=0;PQR=0;PRO=0;QA=1366;QR=8547;RO=224;RPL=0;RPP=81.1833;RPPR=489.42;RPR=36;RUN=1;SAF=36;SAP=81.1833;SAR=0;SRF=224;SRP=489.42;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:162:135,27:135:5138:27:1023:-43.6097,0,-413.667 0/1:34:27,7:27:1033:7:265:-13.9747,0,-83.0443 0/0:64:62,2:62:2376:2:78:0,-11.8624,-206.647 dDocent_Contig_186 26 . A G 903.881 . 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AB=0.707182;ABP=70.4939;AC=3;AF=0.5;AN=6;AO=128;CIGAR=1X;DP=181;DPB=181;DPRA=0;EPP=280.959;EPPR=118.098;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=0.886792;PAO=0;PQA=0;PQR=0;PRO=0;QA=4748;QR=2046;RO=53;RPL=0;RPP=280.959;RPPR=118.098;RPR=128;RUN=1;SAF=128;SAP=280.959;SAR=0;SRF=53;SRP=118.098;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:102:35,67:35:1359:67:2505:-194.95,0,-91.8847 0/1:21:4,17:4:147:17:603:-48.2665,0,-7.26577 0/1:58:14,44:14:540:44:1640:-130.407,0,-31.478 dDocent_Contig_188 18 . A G 109.833 . AB=0.162791;ABP=45.4803;AC=1;AF=0.166667;AN=6;AO=7;CIGAR=1X;DP=147;DPB=147;DPRA=0.826923;EPP=18.2106;EPPR=307.016;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=0.914286;PAO=0;PQA=0;PQR=0;PRO=0;QA=282;QR=5527;RO=140;RPL=0;RPP=18.2106;RPPR=307.016;RPR=7;RUN=1;SAF=7;SAP=18.2106;SAR=0;SRF=140;SRP=307.016;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:81:81,0:81:3198:0:0:0,-24.3834,-287.906 0/1:43:36,7:36:1424:7:282:-12.8072,0,-115.472 0/0:23:23,0:23:905:0:0:0,-6.92369,-81.7588 dDocent_Contig_189 7 . T C 9762.7 . AB=0.573129;ABP=30.3236;AC=3;AF=0.5;AN=6;AO=337;CIGAR=1X;DP=588;DPB=588;DPRA=0;EPP=734.797;EPPR=548.05;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=12873;QR=9582;RO=251;RPL=0;RPP=734.797;RPPR=548.05;RPR=337;RUN=1;SAF=337;SAP=734.797;SAR=0;SRF=251;SRP=548.05;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:293:144,149:144:5504:149:5723:-426.835,0,-407.144 0/1:139:50,89:50:1896:89:3352:-259.991,0,-129.045 0/1:156:57,99:57:2182:99:3798:-294.966,0,-149.646 dDocent_Contig_190 172 . C T 464.368 . AB=0.4;ABP=6.91895;AC=3;AF=0.5;AN=6;AO=18;CIGAR=1X;DP=45;DPB=45;DPRA=0;EPP=42.0968;EPPR=61.6401;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=708;QR=1052;RO=27;RPL=18;RPP=42.0968;RPPR=61.6401;RPR=0;RUN=1;SAF=0;SAP=42.0968;SAR=18;SRF=0;SRP=61.6401;SRR=27;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:25:11,14:11:427:14:545:-41.8647,0,-31.2554 0/1:11:8,3:8:304:3:122:-8.06116,0,-24.4058 0/1:9:8,1:8:321:1:41:-1.3853,0,-26.5488 dDocent_Contig_191 9 . T C 9096.57 . 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AB=0.25784;ABP=880.119;AC=3;AF=0.5;AN=6;AO=444;CIGAR=1X6M1X;DP=1722;DPB=1722;DPRA=0;EPP=967.144;EPPR=163.699;GTI=0;LEN=1;MEANALT=12.6667;MQM=57.2185;MQMR=60;NS=3;NUMALT=3;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=16355;QR=2877;RO=74;RPL=0;RPP=967.144;RPPR=163.699;RPR=444;RUN=1;SAF=444;SAP=967.144;SAR=0;SRF=74;SRP=163.699;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 1|0:878:28,49,212,527:28:1092:49,212,527:1916,7743,20881:-2246.74,-2109.38,-2184.39,-1627.95,-1571.92,-1653.89,-537.46,-481.433,0,-468.579 1|0:327:16,10,114,175:16:605:10,114,175:378,4213,6936:-858.662,-832.589,-879.169,-521.121,-539.821,-536.393,-292.765,-311.467,0,-289.677 1|0:517:30,7,118,308:30:1180:7,118,308:275,4399,12330:-1266.97,-1253.38,-1348.34,-917.08,-991.528,-978.625,-261.853,-336.304,0,-266.206 dDocent_Contig_196 10 . C T 155.071 . AB=0.0541872;ABP=353.452;AC=0;AF=0;AN=6;AO=17;CIGAR=1X2M1X;DP=318;DPB=318;DPRA=3.7973;EPP=39.9253;EPPR=561.079;GTI=0;LEN=1;MEANALT=3.5;MQM=15;MQMR=49.3852;NS=3;NUMALT=2;ODDS=0;PAIRED=1;PAIREDR=0.996109;PAO=0;PQA=0;PQR=0;PRO=0;QA=678;QR=10265;RO=257;RPL=0;RPP=39.9253;RPPR=561.079;RPR=17;RUN=1;SAF=17;SAP=39.9253;SAR=0;SRF=257;SRP=561.079;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|0:203:160,11,20:160:6387:11,20:438,801:-17.0289,-53.7275,-522.178,0,-460.359,-465.849 0|0:37:34,0,3:34:1352:0,3:0,104:0,-10.235,-114.324,-1.46661,-105.903,-105 0|0:78:63,6,8:63:2526:6,8:240,249:0,-12.739,-194.716,-0.157283,-177.782,-181.642 dDocent_Contig_197 139 . C T 32.5803 . 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AB=0.00854701;ABP=248.461;AC=0;AF=0;AN=6;AO=7;CIGAR=1X2M2X;DP=278;DPB=278;DPRA=2.17308;EPP=18.2106;EPPR=532.85;GTI=0;LEN=1;MEANALT=3;MQM=60;MQMR=60;NS=3;NUMALT=2;ODDS=1.38778e-17;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=215;QR=8385;RO=244;RPL=7;RPP=18.2106;RPPR=532.85;RPR=0;RUN=1;SAF=7;SAP=18.2106;SAR=0;SRF=244;SRP=532.85;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|0:117:95,1,17:95:3300:1,17:26,607:-20.9022,-47.4657,-315.441,0,-266.254,-263.174 0|0:52:50,0,0:50:1728:0,0:0,0:0,-15.0515,-155.442,-15.0515,-155.442,-155.442 0|0:109:99,6,2:99:3357:6,2:189,73:0,-14.6285,-285.029,-23.8293,-280.871,-295.466 dDocent_Contig_199 11 . T C 9759.51 . AB=0.843931;ABP=180.757;AC=4;AF=0.666667;AN=6;AO=299;CIGAR=1X;DP=336;DPB=336;DPRA=0;EPP=652.281;EPPR=83.3548;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=11874;QR=1489;RO=37;RPL=0;RPP=652.281;RPPR=83.3548;RPR=299;RUN=1;SAF=299;SAP=652.281;SAR=0;SRF=37;SRP=83.3548;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 1/1:163:10,153:10:408:153:6103:-511.95,-11.9875,0 0/1:83:10,73:10:406:73:2874:-233.79,0,-11.9145 0/1:90:17,73:17:675:73:2897:-233.734,0,-33.9823 dDocent_Contig_201 10 . T C 840.826 . AB=0.222222;ABP=51.2652;AC=2;AF=0.333334;AN=6;AO=16;CIGAR=1X4M1X2M;DP=79;DPB=79;DPRA=0;EPP=37.7539;EPPR=44.2683;GTI=0;LEN=1;MEANALT=4.5;MQM=37.8125;MQMR=60;NS=3;NUMALT=5;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=573;QR=752;RO=19;RPL=0;RPP=37.7539;RPPR=44.2683;RPR=16;RUN=1;SAF=16;SAP=37.7539;SAR=0;SRF=19;SRP=44.2683;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 1|1:43:6,3,15,11,8,0:6:241:3,15,11,8,0:117,604,384,313,0:-56.365,-48.5528,-67.5133,-8.37049,-18.6198,-23.7243,-29.9251,-40.169,0,-46.4738,-32.4355,-42.6819,-2.4983,-24.0566,-49.8921,-58.1712,-68.4164,-28.2397,-49.7852,-52.3003,-78.0342 0|0:7:3,0,1,0,3,0:3:119:0,1,0,3,0:0,40,0,122,0:-9.1651,-10.0682,-19.8607,-6.77475,-16.5658,-16.2648,-10.0682,-19.8607,-16.5658,-19.8607,0,-9.79356,-6.49766,-9.79356,-8.89047,-10.0682,-19.8607,-16.5658,-19.8607,-9.79356,-19.8607 0|0:29:10,2,1,5,8,3:10:392:2,1,5,8,3:79,38,189,328,121:-24.075,-20.5844,-52.2167,-23.9694,-49.7027,-55.9024,-12.4326,-38.1617,-41.5462,-43.1568,0,-25.7387,-29.124,-17.5839,-29.832,-17.109,-42.8431,-46.228,-34.6871,-22.2631,-48.441 dDocent_Contig_204 7 . T A 231.016 . AB=0.166667;ABP=101.45;AC=3;AF=0.5;AN=6;AO=17;CIGAR=1X;DP=102;DPB=102;DPRA=0;EPP=39.9253;EPPR=187.585;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=647;QR=3245;RO=85;RPL=0;RPP=39.9253;RPPR=187.585;RPR=17;RUN=1;SAF=17;SAP=39.9253;SAR=0;SRF=85;SRP=187.585;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:46:41,5:41:1561:5:195:-4.07682,0,-126.913 0/1:21:17,4:17:650:4:152:-7.72757,0,-52.5137 0/1:35:27,8:27:1034:8:300:-16.8189,0,-82.8333 dDocent_Contig_205 107 . N G 179.799 . AB=0;ABP=0;AC=2;AF=1;AN=2;AO=6;CIGAR=1X;DP=6;DPB=6;DPRA=0;EPP=16.0391;EPPR=0;GTI=0;LEN=1;MEANALT=1;MQM=40;MQMR=0;NS=1;NUMALT=1;ODDS=8.76405;PAIRED=1;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=202;QR=0;RO=0;RPL=0;RPP=16.0391;RPPR=0;RPR=6;RUN=1;SAF=0;SAP=16.0391;SAR=6;SRF=0;SRP=0;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 1/1:6:0,6:0:0:6:202:-17.9798,-1.80618,0 ./.:.:.:.:.:.:.:. ./.:.:.:.:.:.:.:. dDocent_Contig_206 27 . G A 68.8453 . AB=0.0876494;ABP=373.709;AC=1;AF=0.166667;AN=6;AO=23;CIGAR=7M1X2M6I2M;DP=322;DPB=335.25;DPRA=0;EPP=52.9542;EPPR=641.423;GTI=0;LEN=1;MEANALT=2;MQM=60;MQMR=60;NS=3;NUMALT=2;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=910;QR=11547;RO=294;RPL=0;RPP=52.9542;RPPR=641.423;RPR=23;RUN=1;SAF=23;SAP=52.9542;SAR=0;SRF=294;SRP=641.423;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|1:222:200,21,0:200:7853:21,0:830,0:-8.37677,0,-639.845,-68.5828,-646.167,-714.469 0|0:29:25,1,3:25:972:1,3:41,109:-1.34103,-5.47111,-85.0653,0,-76.4676,-78.9494 0|0:71:69,1,0:69:2722:1,0:39,0:0,-17.5751,-241.225,-20.7711,-241.526,-244.732 dDocent_Contig_207 10 . C T 14989.5 . AB=0.258159;ABP=1217.16;AC=3;AF=0.5;AN=6;AO=617;CIGAR=1X;DP=2390;DPB=2390;DPRA=0;EPP=1342.81;EPPR=3824.81;GTI=0;LEN=1;MEANALT=2;MQM=60;MQMR=59.9887;NS=3;NUMALT=1;ODDS=0;PAIRED=0;PAIREDR=0.0204082;PAO=0;PQA=0;PQR=0;PRO=0;QA=24705;QR=70878;RO=1764;RPL=0;RPP=1342.81;RPPR=3833.49;RPR=617;RUN=1;SAF=617;SAP=1342.81;SAR=0;SRF=1763;SRP=3824.81;SRR=1;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:1365:1033,324:1033:41596:324:13020:-761.907,0,-3330.6 0/1:327:241,86:241:9587:86:3359:-203.944,0,-763.82 0/1:698:490,207:490:19695:207:8326:-538.626,0,-1560.6 dDocent_Contig_208 19 . T A 59.2555 . AB=0.12069;ABP=75.4926;AC=1;AF=0.166667;AN=6;AO=8;CIGAR=1X;DP=182;DPB=182;DPRA=1.775;EPP=20.3821;EPPR=380.846;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=292;QR=6914;RO=174;RPL=0;RPP=20.3821;RPPR=380.846;RPR=8;RUN=1;SAF=8;SAP=20.3821;SAR=0;SRF=174;SRP=380.846;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:84:83,1:83:3318:1:16:0,-23.6865,-297.066 0/1:58:51,7:51:2015:7:276:-7.74946,0,-164.081 0/0:40:40,0:40:1581:0:0:0,-12.0412,-142.519 dDocent_Contig_209 10 . T C 1003.84 . AB=0.255814;ABP=47.5507;AC=4;AF=0.666666;AN=6;AO=22;CIGAR=1X2M;DP=86;DPB=86;DPRA=0;EPP=50.7827;EPPR=76.8404;GTI=0;LEN=1;MEANALT=2;MQM=60;MQMR=60;NS=3;NUMALT=2;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=875;QR=1347;RO=34;RPL=0;RPP=50.7827;RPPR=76.8404;RPR=22;RUN=1;SAF=22;SAP=50.7827;SAR=0;SRF=34;SRP=76.8404;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|1:40:19,16,5:19:758:16,5:645,194:-47.4569,0,-57.6185,-37.2436,-46.5007,-98.1625 0|1:26:10,7,9:10:390:7,9:275,360:-26.6471,-7.04142,-36.9852,0,-9.43437,-29.3453 1|1:20:5,7,8:5:199:7,8:282,321:-31.8027,-10.0639,-24.3413,-6.86213,0,-20.8377 dDocent_Contig_210 10 . C T 461.918 . AB=0.168605;ABP=167.083;AC=1;AF=0.166667;AN=6;AO=39;CIGAR=1X;DP=392;DPB=392;DPRA=0;EPP=87.6977;EPPR=769.54;GTI=0;LEN=1;MEANALT=1;MQM=54.5897;MQMR=44.2125;NS=3;NUMALT=1;ODDS=0;PAIRED=0.871795;PAIREDR=0.688385;PAO=0;PQA=0;PQR=0;PRO=0;QA=1550;QR=14023;RO=353;RPL=0;RPP=87.6977;RPPR=769.54;RPR=39;RUN=1;SAF=39;SAP=87.6977;SAR=0;SRF=353;SRP=769.54;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:172:143,29:143:5648:29:1152:-47.7147,0,-356.278 0/0:110:106,4:106:4210:4:157:0,-18.6212,-311.401 0/0:110:104,6:104:4165:6:241:0,-14.1059,-277.536 dDocent_Contig_211 13 . A G 13281.6 . AB=0.137255;ABP=585.902;AC=0;AF=0;AN=6;AO=70;CIGAR=1X1M1X;DP=510;DPB=510;DPRA=0;EPP=155.013;EPPR=42.0968;GTI=0;LEN=1;MEANALT=3;MQM=60;MQMR=60;NS=3;NUMALT=3;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=2729;QR=723;RO=18;RPL=0;RPP=155.013;RPPR=42.0968;RPR=70;RUN=1;SAF=70;SAP=155.013;SAR=0;SRF=18;SRP=42.0968;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|0:315:10,32,229,44:10:402:32,229,44:1270,9183,1776:-866.757,-765.223,-788.719,-113.215,-41.8012,-77.4074,-723.426,-652.011,0,-743.309 0|0:43:1,9,22,11:1:41:9,22,11:350,892,441:-106.216,-77.7598,-78.4348,-32.9536,-7.583,-29.7157,-70.1841,-44.8123,0,-70.2572 0|0:152:7,29,87,29:7:280:29,87,29:1109,3513,1168:-360.707,-271.832,-286.166,-73.209,-5.29638,-70.085,-266.546,-198.629,0,-280.881 dDocent_Contig_215 99 . N C 9567.46 . AB=0;ABP=0;AC=6;AF=1;AN=6;AO=431;CIGAR=1X;DP=432;DPB=432;DPRA=0;EPP=938.915;EPPR=0;GTI=0;LEN=1;MEANALT=1.33333;MQM=29.9838;MQMR=0;NS=3;NUMALT=1;ODDS=0;PAIRED=0.932715;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=13588;QR=0;RO=0;RPL=431;RPP=938.915;RPPR=0;RPR=0;RUN=1;SAF=431;SAP=938.915;SAR=0;SRF=0;SRP=0;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 1/1:286:0,285:0:0:285:9021:-646.76,-85.7936,0 1/1:34:0,34:0:0:34:1075:-66.0279,-10.235,0 1/1:112:0,112:0:0:112:3492:-243.481,-33.7154,0 dDocent_Contig_218 98 . N A 16367.3 . AB=0;ABP=0;AC=6;AF=1;AN=6;AO=601;CIGAR=1X;DP=603;DPB=603;DPRA=0;EPP=1308.07;EPPR=0;GTI=0;LEN=1;MEANALT=1.66667;MQM=46.98;MQMR=0;NS=3;NUMALT=1;ODDS=0;PAIRED=0.178037;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=20338;QR=0;RO=0;RPL=601;RPP=1308.07;RPPR=0;RPR=0;RUN=1;SAF=601;SAP=1308.07;SAR=0;SRF=0;SRP=0;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 1/1:340:0,339:0:0:339:11484:-949.564,-102.049,0 1/1:102:0,102:0:0:102:3456:-271.656,-30.7051,0 1/1:161:0,160:0:0:160:5398:-415.033,-48.1648,0 dDocent_Contig_225 54 . A G 354.801 . AB=0.246377;ABP=41.5618;AC=3;AF=0.5;AN=6;AO=17;CIGAR=1X;DP=69;DPB=69;DPRA=0;EPP=39.9253;EPPR=115.927;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=674;QR=2046;RO=52;RPL=17;RPP=39.9253;RPPR=115.927;RPR=0;RUN=1;SAF=17;SAP=39.9253;SAR=0;SRF=52;SRP=115.927;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:39:29,10:29:1144:10:402:-24.7988,0,-91.5018 0/1:13:9,4:9:355:4:151:-10.0417,0,-28.3948 0/1:17:14,3:14:547:3:121:-6.16248,0,-44.4457 dDocent_Contig_226 14 . T C 174.888 . AB=0.102041;ABP=70.4146;AC=1;AF=0.166667;AN=6;AO=5;CIGAR=1M2D1X9M;DP=357;DPB=344.692;DPRA=0;EPP=13.8677;EPPR=576.279;GTI=0;LEN=1;MEANALT=5;MQM=60;MQMR=60;NS=3;NUMALT=4;ODDS=0;PAIRED=0;PAIREDR=0.886364;PAO=0;PQA=0;PQR=0;PRO=0;QA=198;QR=10441;RO=264;RPL=0;RPP=13.8677;RPPR=576.279;RPR=5;RUN=1;SAF=5;SAP=13.8677;SAR=0;SRF=264;SRP=576.279;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|0:177:127,0,17,13,8:127:5014:0,17,13,8:0,651,476,320:-15.1913,-53.4221,-466.007,0,-412.588,-407.47,-14.5437,-427.126,-373.708,-423.213,-27.0581,-439.646,-386.228,-400.766,-437.238 0|1:49:35,5,4,1,2:35:1385:5,4,1,2:198,155,40,79:-5.76151,0,-112.479,-3.56708,-101.251,-116.344,-13.0021,-110.689,-114.253,-126.685,-9.79659,-107.483,-111.047,-120.485,-123.178 0|0:131:102,0,10,3,10:102:4042:0,10,3,10:0,377,120,393:-1.62318,-32.3282,-365.032,-1.4418,-334.142,-331.131,-22.4415,-355.147,-324.256,-354.243,0,-332.707,-301.817,-322.822,-329.697 dDocent_Contig_227 32 . T C 776.754 . AB=0.318681;ABP=28.9964;AC=2;AF=0.333333;AN=6;AO=29;CIGAR=11M1X1M;DP=102;DPB=91;DPRA=0;EPP=65.983;EPPR=131.127;GTI=0;LEN=1;MEANALT=2.5;MQM=60;MQMR=60;NS=3;NUMALT=2;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=1163;QR=2310;RO=59;RPL=0;RPP=65.983;RPPR=131.127;RPR=29;RUN=1;SAF=29;SAP=65.983;SAR=0;SRF=59;SRP=131.127;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|1:69:34,10,25:34:1343:10,25:336,1002:-72.3628,-55.4109,-162.912,0,-83.3685,-103.035 0|0:11:10,1,0:10:380:1,0:38,0:-0.485939,0,-31.2406,-3.49624,-31.5416,-34.6581 0|1:22:15,2,4:15:587:2,4:70,161:-8.83109,-7.64933,-55.3485,0,-42.6756,-47.1638 dDocent_Contig_229 11 . C T 56.0858 . AB=0.3;ABP=6.48466;AC=1;AF=0.166667;AN=6;AO=7;CIGAR=1X;DP=126;DPB=126;DPRA=0;EPP=18.2106;EPPR=261.416;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=0.857143;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=276;QR=4742;RO=119;RPL=0;RPP=18.2106;RPPR=261.416;RPR=7;RUN=1;SAF=7;SAP=18.2106;SAR=0;SRF=119;SRP=261.416;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:76:74,2:74:2956:2:82:0,-15.0986,-258.342 0/1:10:7,3:7:263:3:112:-7.43249,0,-21.0128 0/0:40:38,2:38:1523:2:82:0,-4.26152,-129.529 dDocent_Contig_230 65 . C T 264.024 . AB=0.152941;ABP=180.867;AC=3;AF=0.5;AN=6;AO=26;CIGAR=1X;DP=170;DPB=170;DPRA=0;EPP=59.4686;EPPR=315.702;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=912;QR=5166;RO=144;RPL=26;RPP=59.4686;RPPR=315.702;RPR=0;RUN=1;SAF=26;SAP=59.4686;SAR=0;SRF=144;SRP=315.702;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:87:74,13:74:2696:13:443:-14.0039,0,-216.681 0/1:32:26,6:26:928:6:218:-10.3382,0,-74.2037 0/1:51:44,7:44:1542:7:251:-7.58314,0,-123.72 dDocent_Contig_231 33 . G A 313.611 . AB=0.220588;ABP=49.1222;AC=3;AF=0.5;AN=6;AO=15;CIGAR=1X4M;DP=68;DPB=68;DPRA=0;EPP=35.5824;EPPR=109.412;GTI=0;LEN=1;MEANALT=1.33333;MQM=60;MQMR=60;NS=3;NUMALT=2;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=595;QR=1883;RO=49;RPL=0;RPP=35.5824;RPPR=109.412;RPR=15;RUN=1;SAF=15;SAP=35.5824;SAR=0;SRF=49;SRP=109.412;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|1:31:23,4,4:23:896:4,4:150,159:-6.17777,-0.829046,-73.2575,0,-61.3702,-72.4475 0|1:24:14,0,10:14:525:0,10:0,395:-28.6832,-32.8976,-75.8838,0,-43.3725,-40.3622 0|1:13:12,0,1:12:462:0,1:0,41:-0.181177,-3.79354,-41.7019,0,-38.316,-38.0149 dDocent_Contig_232 31 . C T 1241.42 . AB=0.322368;ABP=44.6683;AC=3;AF=0.5;AN=6;AO=49;CIGAR=1X;DP=152;DPB=152;DPRA=0;EPP=109.412;EPPR=222.329;GTI=0;LEN=1;MEANALT=1.33333;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=1936;QR=4059;RO=101;RPL=0;RPP=109.412;RPPR=222.329;RPR=49;RUN=1;SAF=49;SAP=109.412;SAR=0;SRF=101;SRP=222.329;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:73:47,24:47:1883:24:956:-64.5556,0,-147.894 0/1:34:19,15:19:767:15:589:-43.1123,0,-59.116 0/1:45:35,10:35:1409:10:391:-21.9969,0,-113.511 dDocent_Contig_233 10 . C T 11751 . AB=0.0675883;ABP=1060.29;AC=0;AF=0;AN=6;AO=44;CIGAR=1M2X3M1X1M;DP=651;DPB=649.375;DPRA=0;EPP=98.5551;EPPR=270.101;GTI=0;LEN=1;MEANALT=10;MQM=60;MQMR=60;NS=3;NUMALT=5;ODDS=0;PAIRED=0.613636;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=1727;QR=4806;RO=123;RPL=0;RPP=98.5551;RPPR=270.101;RPR=44;RUN=1;SAF=44;SAP=98.5551;SAR=0;SRF=123;SRP=270.101;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|0:379:79,3,7,15,19,214:79:3099:3,7,15,19,214:121,266,595,751,8662:-690.416,-704.223,-958.175,-692.387,-937.267,-945.134,-665.221,-910.101,-898.264,-915.56,-652.403,-897.283,-885.446,-858.28,-901.537,0,-244.882,-233.045,-205.879,-193.061,-190.436 0|0:92:14,6,2,8,2,54:14:553:6,2,8,2,54:242,78,307,81,2139:-171.819,-156.085,-199.784,-169.622,-195.179,-214.525,-150.839,-176.395,-189.933,-193.936,-169.354,-194.911,-208.448,-189.665,-214.257,0,-25.5551,-39.0935,-20.312,-38.8251,-29.2492 0|0:180:30,0,11,21,10,99:30:1154:0,11,21,10,99:0,443,825,400,3974:-318.388,-327.419,-422.153,-290.907,-385.64,-382.329,-259.57,-354.303,-317.79,-347.981,-294.471,-389.204,-352.692,-321.354,-386.194,0,-94.7322,-58.2181,-26.8813,-61.7824,-64.9302 dDocent_Contig_235 109 . A T 1407.91 . AB=0.699115;ABP=41.9239;AC=3;AF=0.5;AN=6;AO=79;CIGAR=1X;DP=113;DPB=113;DPRA=0;EPP=174.557;EPPR=76.8404;GTI=0;LEN=1;MEANALT=1;MQM=27.1519;MQMR=54.5294;NS=3;NUMALT=1;ODDS=0;PAIRED=0;PAIREDR=0.705882;PAO=0;PQA=0;PQR=0;PRO=0;QA=2551;QR=1148;RO=34;RPL=0;RPP=174.557;RPPR=76.8404;RPR=79;RUN=1;SAF=0;SAP=174.557;SAR=79;SRF=0;SRP=76.8404;SRR=34;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:65:23,42:23:786:42:1336:-74.436,0,-47.9884 0/1:12:4,8:4:134:8:249:-13.6441,0,-8.77897 0/1:36:7,29:7:228:29:966:-58.234,0,-10.0029 dDocent_Contig_236 148 . C G 689.187 . AB=0.220588;ABP=95.234;AC=2;AF=0.333333;AN=6;AO=30;CIGAR=4M1X3M;DP=136;DPB=132.25;DPRA=0;EPP=68.1545;EPPR=161.528;GTI=0;LEN=1;MEANALT=4.33333;MQM=60;MQMR=58.2192;NS=3;NUMALT=4;ODDS=0;PAIRED=1;PAIREDR=0.945205;PAO=0;PQA=0;PQR=0;PRO=0;QA=1122;QR=2642;RO=73;RPL=0;RPP=68.1545;RPPR=161.528;RPR=30;RUN=1;SAF=0;SAP=68.1545;SAR=30;SRF=0;SRP=161.528;SRR=73;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|0:50:27,3,11,9,0:27:984:3,11,9,0:69,428,345,0:-24.7033,-27.5446,-104.632,0,-72.7127,-74.6965,-4.49711,-77.2144,-49.6827,-79.8011,-32.8311,-105.535,-78.0078,-82.5103,-110.832 0|1:58:32,2,5,13,5:32:1171:2,5,13,5:56,179,465,201:-28.2745,-33.4785,-127.244,-24.2739,-114.21,-117.138,0,-89.9406,-80.7368,-90.459,-21.4082,-111.354,-102.15,-77.8783,-114.281 0|1:28:14,0,3,8,1:14:487:0,3,8,1:0,120,312,41:-21.4637,-25.6781,-65.2576,-16.4797,-56.0592,-55.1561,0,-39.5975,-30.3958,-37.1892,-22.2956,-61.8764,-52.6777,-36.2148,-61.5753 dDocent_Contig_237 107 . N A 160.016 . AB=0;ABP=0;AC=2;AF=1;AN=2;AO=5;CIGAR=1X;DP=5;DPB=5;DPRA=0;EPP=13.8677;EPPR=0;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=0;NS=1;NUMALT=1;ODDS=8.07091;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=174;QR=0;RO=0;RPL=0;RPP=13.8677;RPPR=0;RPR=5;RUN=1;SAF=0;SAP=13.8677;SAR=5;SRF=0;SRP=0;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 1/1:5:0,5:0:0:5:174:-16.0015,-1.50515,0 ./.:.:.:.:.:.:.:. ./.:.:.:.:.:.:.:. dDocent_Contig_238 10 . C T 133.244 . AB=0.178571;ABP=53.2644;AC=2;AF=0.333333;AN=6;AO=11;CIGAR=1X2M1X2M2X;DP=105;DPB=105;DPRA=0;EPP=26.8965;EPPR=207.129;GTI=0;LEN=1;MEANALT=1;MQM=40;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=434;QR=3651;RO=94;RPL=0;RPP=26.8965;RPPR=207.129;RPR=11;RUN=1;SAF=11;SAP=26.8965;SAR=0;SRF=94;SRP=207.129;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|0:49:48,1:48:1872:1:40:0,-11.0515,-165.009 0|1:17:14,3:14:543:3:115:-4.96212,0,-44.0934 0|1:39:32,7:32:1236:7:279:-11.885,0,-99.7824 dDocent_Contig_239 9 . T C 68.7982 . AB=0.15625;ABP=35.8538;AC=1;AF=0.166667;AN=6;AO=5;CIGAR=1M1D1M1X6M1X;DP=68;DPB=67.6364;DPRA=1.77778;EPP=13.8677;EPPR=135.47;GTI=0;LEN=1;MEANALT=2;MQM=60;MQMR=60;NS=3;NUMALT=2;ODDS=0;PAIRED=1;PAIREDR=1;PAO=1.5;PQA=61;PQR=0;PRO=0;QA=194;QR=2346;RO=61;RPL=0;RPP=13.8677;RPPR=135.47;RPR=5;RUN=1;SAF=5;SAP=13.8677;SAR=0;SRF=61;SRP=135.47;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|1:32:25,2,5:25:972:2,5:75,194:-8.40269,-9.80977,-89.0703,0,-73.7328,-78.3525 0|0:9:9,0,0:9:339:0,0:0,0:0,-2.70927,-30.8629,-2.70927,-30.8629,-30.8629 0|0:27:27,0,0:27:1035:0,0:0,0:0,-8.12781,-93.3363,-8.12781,-93.3363,-93.3363 dDocent_Contig_240 12 . C T 59.4574 . AB=0.122449;ABP=63.6786;AC=1;AF=0.166667;AN=6;AO=9;CIGAR=1X;DP=165;DPB=165;DPRA=0.922414;EPP=22.5536;EPPR=333.13;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=59.3077;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=0.987179;PAO=0;PQA=0;PQR=0;PRO=0;QA=364;QR=6268;RO=156;RPL=0;RPP=22.5536;RPPR=341.76;RPR=9;RUN=1;SAF=9;SAP=22.5536;SAR=0;SRF=155;SRP=333.13;SRR=1;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:58:58,0:58:2326:0:0:0,-17.4597,-209.495 0/1:49:43,6:43:1739:6:246:-7.76965,0,-135.666 0/0:58:55,3:55:2203:3:118:0,-6.45816,-187.437 dDocent_Contig_241 126 . C T 137.791 . AB=0.236842;ABP=25.8679;AC=2;AF=0.333333;AN=6;AO=13;CIGAR=1X;DP=106;DPB=106;DPRA=0;EPP=31.2394;EPPR=204.957;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=3.46945e-18;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=445;QR=3207;RO=93;RPL=0;RPP=31.2394;RPPR=204.957;RPR=13;RUN=1;SAF=0;SAP=31.2394;SAR=13;SRF=0;SRP=204.957;SRR=93;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:68:64,4:64:2210:4:140:0,-7.52511,-186.226 0/1:16:14,2:14:477:2:62:-1.07201,0,-38.4387 0/1:22:15,7:15:520:7:243:-15.5862,0,-40.5065 dDocent_Contig_243 10 . A T 91.6184 . AB=0.184211;ABP=35.9253;AC=1;AF=0.166667;AN=6;AO=32;CIGAR=2X;DP=324;DPB=324;DPRA=0;EPP=72.4974;EPPR=637.08;GTI=0;LEN=1;MEANALT=1;MQM=35.4375;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=0;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=1281;QR=11547;RO=292;RPL=0;RPP=72.4974;RPPR=637.08;RPR=32;RUN=1;SAF=32;SAP=72.4974;SAR=0;SRF=292;SRP=637.08;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|0:189:171,18:171:6763:18:726:0,-11.0376,-562.548 0|1:38:31,7:31:1220:7:278:-10.9858,0,-98.6414 0|0:97:90,7:90:3564:7:277:0,-4.76671,-296.379 dDocent_Contig_245 17 . A T 203.384 . AB=0.158537;ABP=86.0559;AC=2;AF=0.333333;AN=6;AO=14;CIGAR=1X;DP=101;DPB=101;DPRA=0;EPP=33.4109;EPPR=191.928;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=571;QR=3451;RO=87;RPL=0;RPP=33.4109;RPPR=191.928;RPR=14;RUN=1;SAF=14;SAP=33.4109;SAR=0;SRF=87;SRP=191.928;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:73:62,11:62:2462:11:449:-18.7907,0,-199.747 0/1:9:7,2:7:277:2:82:-5.07041,0,-22.5907 0/0:19:18,1:18:712:1:40:0,-1.72389,-60.411 dDocent_Contig_246 62 . C T 33.2206 . AB=0.0987654;ABP=116.275;AC=1;AF=0.166667;AN=6;AO=10;CIGAR=1X;DP=305;DPB=305;DPRA=0;EPP=24.725;EPPR=643.595;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=6.93889e-18;PAIRED=1;PAIREDR=0.955932;PAO=0;PQA=0;PQR=0;PRO=0;QA=405;QR=11618;RO=295;RPL=10;RPP=24.725;RPPR=643.595;RPR=0;RUN=1;SAF=10;SAP=24.725;SAR=0;SRF=295;SRP=643.595;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:193:192,1:192:7622:1:41:0,-54.0042,-681.503 0/0:31:30,1:30:1185:1:40:0,-5.33625,-102.934 0/1:81:73,8:73:2811:8:324:-5.14576,0,-228.715 dDocent_Contig_247 8 . T A 4440.81 . AB=0.52;ABP=4.05261;AC=3;AF=0.5;AN=6;AO=156;CIGAR=1X;DP=300;DPB=300;DPRA=0;EPP=341.76;EPPR=315.702;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=0.967949;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=5991;QR=5535;RO=144;RPL=0;RPP=341.76;RPPR=315.702;RPR=156;RUN=1;SAF=156;SAP=341.76;SAR=0;SRF=144;SRP=315.702;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:188:84,104:84:3225:104:3994:-302.955,0,-233.802 0/1:25:22,3:22:833:3:117:-3.38463,0,-67.7658 0/1:87:38,49:38:1477:49:1880:-143.258,0,-107.014 dDocent_Contig_248 1 . N G 118.883 . AB=0;ABP=0;AC=2;AF=1;AN=2;AO=4;CIGAR=1X;DP=4;DPB=4;DPRA=0;EPP=11.6962;EPPR=0;GTI=0;LEN=1;MEANALT=1;MQM=36;MQMR=0;NS=1;NUMALT=1;ODDS=7.37776;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=146;QR=0;RO=0;RPL=0;RPP=11.6962;RPPR=0;RPR=4;RUN=1;SAF=4;SAP=11.6962;SAR=0;SRF=0;SRP=0;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 1/1:4:0,4:0:0:4:146:-11.888,-1.20412,0 ./.:.:.:.:.:.:.:. ./.:.:.:.:.:.:.:. dDocent_Contig_249 15 . A G 133.772 . AB=0.150685;ABP=80.3802;AC=1;AF=0.166667;AN=6;AO=11;CIGAR=1X;DP=116;DPB=116;DPRA=3.39535;EPP=26.8965;EPPR=231.015;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=3.46945e-18;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=406;QR=4084;RO=105;RPL=0;RPP=26.8965;RPPR=231.015;RPR=11;RUN=1;SAF=11;SAP=26.8965;SAR=0;SRF=105;SRP=231.015;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:73:62,11:62:2422:11:406:-14.9001,0,-196.17 0/0:11:11,0:11:427:0:0:0,-3.31133,-38.7829 0/0:32:32,0:32:1235:0:0:0,-9.63296,-111.42 dDocent_Contig_251 166 . C T 279.892 . AB=0.245283;ABP=32.8783;AC=3;AF=0.5;AN=6;AO=13;CIGAR=1X;DP=53;DPB=53;DPRA=0;EPP=31.2394;EPPR=89.8692;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=3.46945e-18;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=522;QR=1571;RO=40;RPL=13;RPP=31.2394;RPPR=89.8692;RPR=0;RUN=1;SAF=0;SAP=31.2394;SAR=13;SRF=0;SRP=89.8692;SRR=40;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:18:10,8:10:399:8:322:-23.9298,0,-30.8496 0/1:23:21,2:21:812:2:80:-0.667885,0,-66.4637 0/1:12:9,3:9:360:3:120:-7.57554,0,-29.1503 dDocent_Contig_252 52 . G C 1158.77 . AB=0.387387;ABP=15.2371;AC=3;AF=0.5;AN=6;AO=43;CIGAR=1X;DP=111;DPB=111;DPRA=0;EPP=96.3836;EPPR=150.67;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=1709;QR=2719;RO=68;RPL=43;RPP=96.3836;RPPR=150.67;RPR=0;RUN=1;SAF=43;SAP=96.3836;SAR=0;SRF=68;SRP=150.67;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:59:34,25:34:1379:25:1007:-73.1616,0,-106.602 0/1:18:9,9:9:358:9:356:-26.98,0,-27.164 0/1:34:25,9:25:982:9:346:-21.2582,0,-78.4408 dDocent_Contig_253 58 . G A 3089.95 . AB=0.509677;ABP=3.13639;AC=5;AF=0.833333;AN=6;AO=79;CIGAR=1X4M;DP=155;DPB=155;DPRA=0;EPP=174.557;EPPR=68.1545;GTI=0;LEN=1;MEANALT=1.66667;MQM=60;MQMR=60;NS=3;NUMALT=2;ODDS=2.77556e-17;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=3136;QR=1165;RO=30;RPL=79;RPP=174.557;RPPR=68.1545;RPR=0;RUN=1;SAF=79;SAP=174.557;SAR=0;SRF=30;SRP=68.1545;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 1|1:103:25,40,38:25:972:40,38:1525,1503:-161.353,-43.8132,-111.643,-45.1915,0,-113.629 1|1:13:0,6,7:0:0:6,7:236,285:-43.3235,-23.9172,-22.111,-19.8056,0,-17.6983 0|1:39:5,0,34:5:193:0,34:0,1348:-109.841,-111.346,-127.195,0,-16.2356,-6.00062 dDocent_Contig_254 11 . A T 1670.29 . AB=0.27459;ABP=110.694;AC=3;AF=0.5;AN=6;AO=67;CIGAR=1X3M;DP=244;DPB=244;DPRA=0;EPP=148.499;EPPR=350.446;GTI=0;LEN=1;MEANALT=2.66667;MQM=60;MQMR=60;NS=3;NUMALT=2;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=2675;QR=6360;RO=160;RPL=0;RPP=148.499;RPPR=350.446;RPR=67;RUN=1;SAF=67;SAP=148.499;SAR=0;SRF=160;SRP=350.446;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|1:145:103,4,31:103:4099:4,31:159,1250:-72.036,-89.9527,-426.246,0,-324.416,-328.173 0|1:27:20,0,7:20:789:0,7:0,285:-17.8966,-23.9172,-88.8225,0,-65.3087,-63.2015 0|1:72:37,6,29:37:1472:6,29:237,1140:-82.6193,-74.2557,-193.65,0,-101.699,-112.47 dDocent_Contig_256 17 . T C 15767.4 . AB=0.898876;ABP=126.003;AC=5;AF=0.833333;AN=6;AO=481;CIGAR=1X;DP=521;DPB=521;DPRA=0;EPP=1047.49;EPPR=89.8692;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=0.941788;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=19006;QR=1491;RO=40;RPL=0;RPP=1047.49;RPPR=89.8692;RPR=481;RUN=1;SAF=481;SAP=1047.49;SAR=0;SRF=40;SRP=89.8692;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 1/1:317:24,293:24:892:293:11545:-957.711,-14.8307,0 0/1:89:9,80:9:334:80:3158:-257.517,0,-3.62035 1/1:115:7,108:7:265:108:4303:-363.025,-10.408,0 dDocent_Contig_257 18 . C T 116.225 . AB=0.0893855;ABP=789.435;AC=1;AF=0.166667;AN=6;AO=68;CIGAR=1X;DP=914;DPB=914;DPRA=0;EPP=150.67;EPPR=1837.9;GTI=0;LEN=1;MEANALT=1.33333;MQM=57.1029;MQMR=59.7456;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=0.973964;PAO=0;PQA=0;PQR=0;PRO=0;QA=2716;QR=33706;RO=845;RPL=0;RPP=150.67;RPPR=1837.9;RPR=68;RUN=1;SAF=68;SAP=150.67;SAR=0;SRF=845;SRP=1837.9;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:537:489,48:489:19477:48:1942:-13.1454,0,-1589.54 0/0:124:116,7:116:4605:7:280:0,-11.8448,-385.548 0/0:253:240,13:240:9624:13:494:0,-32.541,-821.845 dDocent_Contig_258 11 . G C 2040.81 . AB=0.258824;ABP=174.787;AC=3;AF=0.5;AN=6;AO=88;CIGAR=1X;DP=340;DPB=340;DPRA=0;EPP=194.1;EPPR=550.221;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=3457;QR=10036;RO=252;RPL=0;RPP=194.1;RPPR=550.221;RPR=88;RUN=1;SAF=88;SAP=194.1;SAR=0;SRF=252;SRP=550.221;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:204:157,47:157:6240:47:1862:-106.379,0,-499.941 0/1:41:28,13:28:1114:13:495:-32.5387,0,-88.2028 0/1:95:67,28:67:2682:28:1100:-70.6857,0,-212.904 dDocent_Contig_259 8 . A T 14259.1 . AB=0.426002;ABP=61.1784;AC=3;AF=0.5;AN=6;AO=521;CIGAR=1X;DP=1223;DPB=1223;DPRA=0;EPP=1134.35;EPPR=1525.21;GTI=0;LEN=1;MEANALT=1.33333;MQM=59.8215;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=0.994242;PAIREDR=0.992867;PAO=0;PQA=0;PQR=0;PRO=0;QA=20012;QR=26823;RO=701;RPL=0;RPP=1134.35;RPPR=1525.21;RPR=521;RUN=1;SAF=521;SAP=1134.35;SAR=0;SRF=701;SRP=1525.21;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:418:240,178:240:9195:178:6860:-491.432,0,-701.438 0/1:457:246,211:246:9410:211:8097:-590.208,0,-709.038 0/1:348:215,132:215:8218:132:5055:-349.795,0,-634.558 dDocent_Contig_260 13 . A G 138.435 . AB=0.21875;ABP=24.9965;AC=1;AF=0.166667;AN=6;AO=10;CIGAR=1X2M1X;DP=238;DPB=238;DPRA=0;EPP=24.725;EPPR=491.592;GTI=0;LEN=1;MEANALT=1.66667;MQM=60;MQMR=59.9689;NS=3;NUMALT=1;ODDS=6.93889e-18;PAIRED=0;PAIREDR=0.831111;PAO=0;PQA=0;PQR=0;PRO=0;QA=392;QR=8894;RO=225;RPL=0;RPP=24.725;RPPR=491.592;RPR=10;RUN=1;SAF=10;SAP=24.725;SAR=0;SRF=225;SRP=491.592;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|0:164:159,2:159:6300:2:75:0,-41.733,-559.652 0|1:32:25,7:25:988:7:277:-15.6674,0,-79.5908 0|0:42:41,1:41:1606:1:40:0,-8.64758,-140.79 dDocent_Contig_261 26 . A C 1177.01 . AB=0.354331;ABP=26.4177;AC=3;AF=0.5;AN=6;AO=45;CIGAR=1X3M1X;DP=127;DPB=127;DPRA=0;EPP=100.727;EPPR=159.356;GTI=0;LEN=1;MEANALT=2.66667;MQM=60;MQMR=60;NS=3;NUMALT=2;ODDS=0;PAIRED=0.866667;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=1758;QR=2819;RO=72;RPL=0;RPP=100.727;RPPR=159.356;RPR=45;RUN=1;SAF=45;SAP=100.727;SAR=0;SRF=72;SRP=159.356;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|1:76:44,23,4:44:1723:23,4:903,160:-61.0066,0,-134.735,-61.0716,-128.478,-201.534 0|1:11:7,3,0:7:277:3,0:120,0:-7.79291,0,-21.9085,-9.90012,-22.8116,-32.6985 0|1:40:21,19,0:21:819:19,0:735,0:-54.4243,0,-61.9819,-60.7459,-67.7015,-128.059 dDocent_Contig_262 107 . N A 130.875 . AB=0;ABP=0;AC=4;AF=1;AN=4;AO=5;CIGAR=1X;DP=5;DPB=5;DPRA=0;EPP=13.8677;EPPR=0;GTI=0;LEN=1;MEANALT=1;MQM=36.8;MQMR=0;NS=2;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=140;QR=0;RO=0;RPL=0;RPP=13.8677;RPPR=0;RPR=5;RUN=1;SAF=0;SAP=13.8677;SAR=5;SRF=0;SRP=0;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL ./.:.:.:.:.:.:.:. 1/1:2:0,2:0:0:2:48:-4.47698,-0.60206,0 1/1:3:0,3:0:0:3:92:-8.30867,-0.90309,0 dDocent_Contig_263 39 . T G 5919.03 . AB=0.714829;ABP=108.438;AC=3;AF=0.5;AN=6;AO=188;CIGAR=16M1X9M;DP=263;DPB=263.231;DPRA=0;EPP=411.247;EPPR=135.47;GTI=0;LEN=1;MEANALT=3.33333;MQM=60;MQMR=60;NS=3;NUMALT=2;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=7478;QR=2402;RO=61;RPL=0;RPP=411.247;RPPR=135.47;RPR=188;RUN=1;SAF=188;SAP=411.247;SAR=0;SRF=61;SRP=135.47;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|1:141:39,0,97:39:1540:0,97:0,3862:-306.306,-318.047,-444.769,0,-126.782,-97.5821 0|1:56:15,0,38:15:591:0,38:0,1513:-120.073,-124.588,-173.21,0,-48.6318,-37.1926 0|1:66:7,5,53:7:271:5,53:160,2103:-171.047,-160.272,-181.027,0,-9.42746,-6.3345 dDocent_Contig_265 67 . G A 2738.65 . AB=0.532995;ABP=4.87314;AC=3;AF=0.5;AN=6;AO=105;CIGAR=1X;DP=197;DPB=197;DPRA=0;EPP=231.015;EPPR=202.786;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=3753;QR=3201;RO=92;RPL=105;RPP=231.015;RPPR=202.786;RPR=0;RUN=1;SAF=105;SAP=231.015;SAR=0;SRF=92;SRP=202.786;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:98:43,55:43:1508:55:1958:-146.994,0,-106.512 0/1:24:12,12:12:436:12:439:-32.6295,0,-32.3579 0/1:75:37,38:37:1257:38:1356:-99.7641,0,-90.8462 dDocent_Contig_266 14 . T C 3682.41 . AB=0.751592;ABP=89.3298;AC=3;AF=0.5;AN=6;AO=118;CIGAR=2X;DP=157;DPB=157;DPRA=0;EPP=259.244;EPPR=87.6977;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=4670;QR=1549;RO=39;RPL=0;RPP=259.244;RPPR=87.6977;RPR=118;RUN=1;SAF=118;SAP=259.244;SAR=0;SRF=39;SRP=87.6977;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|1:84:16,68:16:630:68:2686:-216.58,0,-31.7428 0|1:21:8,13:8:320:13:512:-40.1051,0,-22.846 0|1:52:15,37:15:599:37:1472:-117.079,0,-38.5956 dDocent_Contig_268 8 . T A 11490.7 . AB=0.672504;ABP=150.598;AC=3;AF=0.5;AN=6;AO=384;CIGAR=1X;DP=571;DPB=571;DPRA=0;EPP=836.856;EPPR=409.076;GTI=0;LEN=1;MEANALT=1;MQM=59.987;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=14738;QR=7210;RO=187;RPL=0;RPP=836.856;RPPR=409.076;RPR=384;RUN=1;SAF=384;SAP=836.856;SAR=0;SRF=187;SRP=409.076;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:349:107,242:107:4124:242:9326:-733.971,0,-266.178 0/1:60:26,34:26:1006:34:1305:-99.6769,0,-72.7887 0/1:162:54,108:54:2080:108:4107:-320.947,0,-138.664 dDocent_Contig_269 8 . C T 13400.9 . AB=0.246843;ABP=1369.62;AC=3;AF=0.5;AN=6;AO=606;CIGAR=1X;DP=2455;DPB=2455;DPRA=0;EPP=1318.92;EPPR=3886.28;GTI=0;LEN=1;MEANALT=2.33333;MQM=59.934;MQMR=59.5359;NS=3;NUMALT=1;ODDS=1.11022e-16;PAIRED=0.99835;PAIREDR=0.979303;PAO=0;PQA=0;PQR=0;PRO=0;QA=23139;QR=70144;RO=1836;RPL=0;RPP=1318.92;RPPR=3989.83;RPR=606;RUN=1;SAF=606;SAP=1318.92;SAR=0;SRF=1824;SRP=3886.28;SRR=12;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:1073:799,268:799:30676:268:10213:-597.216,0,-2417.82 0/1:865:678,182:678:25720:182:6913:-362.618,0,-2053.8 0/1:517:359,156:359:13748:156:6013:-385.779,0,-1072.58 dDocent_Contig_270 70 . A T 110.843 . AB=0.169492;ABP=58.9901;AC=1;AF=0.166667;AN=6;AO=10;CIGAR=1X2M1X;DP=87;DPB=87;DPRA=4.21429;EPP=24.725;EPPR=165.871;GTI=0;LEN=1;MEANALT=2;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=331;QR=2490;RO=75;RPL=10;RPP=24.725;RPPR=165.871;RPR=0;RUN=1;SAF=10;SAP=24.725;SAR=0;SRF=75;SRP=165.871;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|1:59:47,10:47:1566:10:331:-12.6072,0,-123.724 0|0:11:11,0:11:369:0:0:0,-3.31133,-33.5351 0|0:17:17,0:17:555:0:0:0,-5.11751,-50.262 dDocent_Contig_271 26 . T C 861.696 . AB=0.326923;ABP=30.0702;AC=3;AF=0.5;AN=6;AO=34;CIGAR=1X;DP=104;DPB=104;DPRA=0;EPP=76.8404;EPPR=155.013;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=1355;QR=2788;RO=70;RPL=0;RPP=76.8404;RPPR=155.013;RPR=34;RUN=1;SAF=34;SAP=76.8404;SAR=0;SRF=70;SRP=155.013;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:64:42,22:42:1676:22:875:-59.7909,0,-131.8 0/1:22:18,4:18:726:4:154:-7.61022,0,-59.0414 0/1:18:10,8:10:386:8:326:-24.2913,0,-29.6701 dDocent_Contig_272 107 . N T 608.547 . AB=0;ABP=0;AC=6;AF=1;AN=6;AO=20;CIGAR=1X;DP=20;DPB=20;DPRA=0;EPP=46.4397;EPPR=0;GTI=0;LEN=1;MEANALT=1;MQM=47.45;MQMR=0;NS=3;NUMALT=1;ODDS=0;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=675;QR=0;RO=0;RPL=0;RPP=46.4397;RPPR=0;RPR=20;RUN=1;SAF=0;SAP=46.4397;SAR=20;SRF=0;SRP=0;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 1/1:13:0,13:0:0:13:433:-37.997,-3.91339,0 1/1:2:0,2:0:0:2:69:-6.5096,-0.60206,0 1/1:5:0,5:0:0:5:173:-15.8705,-1.50515,0 dDocent_Contig_273 9 . T C 114.487 . AB=0.0989011;ABP=384.497;AC=1;AF=0.166667;AN=6;AO=82;CIGAR=1X1M1X;DP=998;DPB=998;DPRA=0;EPP=181.071;EPPR=1911.77;GTI=0;LEN=1;MEANALT=4.66667;MQM=43.0244;MQMR=50.7046;NS=3;NUMALT=1;ODDS=0;PAIRED=0;PAIREDR=0.0293123;PAO=0;PQA=0;PQR=0;PRO=0;QA=3202;QR=34678;RO=887;RPL=0;RPP=181.071;RPPR=1929.11;RPR=82;RUN=1;SAF=82;SAP=181.071;SAR=0;SRF=885;SRP=1911.77;SRR=2;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|0:576:519,43:519:20329:43:1661:0,-34.0752,-1578.75 0|0:149:132,12:132:5118:12:476:0,-3.81277,-389.915 0|1:273:236,27:236:9231:27:1065:-13.2727,0,-673.95 dDocent_Contig_274 21 . T C 36.3922 . AB=0.113636;ABP=60.0608;AC=1;AF=0.166667;AN=6;AO=9;CIGAR=1X;DP=197;DPB=197;DPRA=13.5714;EPP=22.5536;EPPR=411.247;GTI=0;LEN=1;MEANALT=1;MQM=56;MQMR=59.8883;NS=3;NUMALT=1;ODDS=0;PAIRED=0;PAIREDR=0.920213;PAO=0;PQA=0;PQR=0;PRO=0;QA=368;QR=7551;RO=188;RPL=0;RPP=22.5536;RPPR=411.247;RPR=9;RUN=1;SAF=9;SAP=22.5536;SAR=0;SRF=188;SRP=411.247;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:146:142,4:142:5700:4:164:0,-28.8304,-497.653 0/0:7:7,0:7:277:0:0:0,-2.10721,-25.2983 0/1:44:39,5:39:1574:5:204:-5.46302,0,-128.63 dDocent_Contig_275 19 . T G 2889.19 . AB=0.664336;ABP=36.5542;AC=3;AF=0.5;AN=6;AO=95;CIGAR=1X;DP=143;DPB=143;DPRA=0;EPP=209.3;EPPR=107.241;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=6.93889e-18;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=3741;QR=1936;RO=48;RPL=0;RPP=209.3;RPPR=107.241;RPR=95;RUN=1;SAF=95;SAP=209.3;SAR=0;SRF=48;SRP=107.241;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:65:20,45:20:811:45:1781:-140.929,0,-53.7378 0/1:34:19,15:19:760:15:579:-42.2076,0,-58.4833 0/1:44:9,35:9:365:35:1381:-111.305,0,-19.9697 dDocent_Contig_276 1 . N G 172.883 . AB=0;ABP=0;AC=6;AF=1;AN=6;AO=5;CIGAR=1X;DP=5;DPB=5;DPRA=0;EPP=6.91895;EPPR=0;GTI=0;LEN=1;MEANALT=1;MQM=52;MQMR=0;NS=3;NUMALT=1;ODDS=0;PAIRED=0.4;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=174;QR=0;RO=0;RPL=0;RPP=13.8677;RPPR=0;RPR=5;RUN=1;SAF=4;SAP=6.91895;SAR=1;SRF=0;SRP=0;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 1/1:1:0,1:0:0:1:41:-4.09457,-0.30103,0 1/1:1:0,1:0:0:1:39:-3.89656,-0.30103,0 1/1:3:0,3:0:0:3:94:-8.69388,-0.90309,0 dDocent_Contig_277 107 . N G 3953.65 . AB=0;ABP=0;AC=6;AF=1;AN=6;AO=135;CIGAR=1X;DP=135;DPB=135;DPRA=0;EPP=296.159;EPPR=0;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=0;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=4377;QR=0;RO=0;RPL=0;RPP=296.159;RPPR=0;RPR=135;RUN=1;SAF=0;SAP=296.159;SAR=135;SRF=0;SRP=0;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 1/1:81:0,81:0:0:81:2637:-237.583,-24.3834,0 1/1:12:0,12:0:0:12:358:-32.5105,-3.61236,0 1/1:42:0,42:0:0:42:1382:-124.669,-12.6433,0 dDocent_Contig_279 143 . T A 173.169 . AB=0.181818;ABP=51.3749;AC=2;AF=0.333333;AN=6;AO=19;CIGAR=1X;DP=168;DPB=168;DPRA=0;EPP=44.2683;EPPR=326.56;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=757;QR=5855;RO=149;RPL=0;RPP=44.2683;RPPR=326.56;RPR=19;RUN=1;SAF=0;SAP=44.2683;SAR=19;SRF=0;SRP=326.56;SRR=149;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:113:104,9:104:4075:9:353:0,-1.88876,-334.614 0/1:32:29,3:29:1137:3:119:-1.46222,0,-92.9783 0/1:23:16,7:16:643:7:285:-19.1007,0,-51.2794 dDocent_Contig_280 76 . T C 5078.24 . AB=0.90566;ABP=78.766;AC=5;AF=0.833333;AN=6;AO=163;CIGAR=1X;DP=176;DPB=176;DPRA=0;EPP=356.96;EPPR=31.2394;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=6136;QR=496;RO=13;RPL=163;RPP=356.96;RPPR=31.2394;RPR=0;RUN=1;SAF=163;SAP=356.96;SAR=0;SRF=13;SRP=31.2394;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 1/1:88:6,82:6:234:82:3150:-262.222,-5.05954,0 1/1:35:2,33:2:77:33:1267:-107.012,-3.22691,0 0/1:53:5,48:5:185:48:1719:-139.031,0,-1.05542 dDocent_Contig_281 18 . G A 2082.24 . AB=0.243902;ABP=213.219;AC=3;AF=0.5;AN=6;AO=90;CIGAR=1X;DP=369;DPB=369;DPRA=0;EPP=198.443;EPPR=608.851;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=3600;QR=10880;RO=279;RPL=0;RPP=198.443;RPPR=608.851;RPR=90;RUN=1;SAF=90;SAP=198.443;SAR=0;SRF=279;SRP=608.851;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:255:187,68:187:7310:68:2729:-168.964,0,-580.86 0/1:44:36,8:36:1391:8:317:-15.6507,0,-112.208 0/1:70:56,14:56:2179:14:554:-29.1314,0,-175.242 dDocent_Contig_282 46 . T A 11280 . AB=0.860335;ABP=406.759;AC=4;AF=0.666667;AN=6;AO=348;CIGAR=1X;DP=399;DPB=399;DPRA=0;EPP=750.022;EPPR=111.584;GTI=0;LEN=1;MEANALT=1.33333;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=13815;QR=2009;RO=50;RPL=1;RPP=750.022;RPPR=111.584;RPR=347;RUN=1;SAF=348;SAP=758.683;SAR=0;SRF=50;SRP=111.584;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:264:30,234:30:1200:234:9278:-755.009,0,-28.8026 1/1:41:1,40:1:40:40:1577:-138.175,-8.34655,0 0/1:94:19,74:19:769:74:2960:-238.343,0,-41.3723 dDocent_Contig_284 12 . C T 360.839 . AB=0.206897;ABP=67.9298;AC=2;AF=0.333333;AN=6;AO=18;CIGAR=1X;DP=128;DPB=128;DPRA=1.06098;EPP=42.0968;EPPR=241.872;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=723;QR=4411;RO=110;RPL=0;RPP=42.0968;RPPR=241.872;RPR=18;RUN=1;SAF=18;SAP=42.0968;SAR=0;SRF=110;SRP=241.872;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:63:48,15:48:1934:15:603:-35.6426,0,-155.292 0/1:24:21,3:21:834:3:120:-3.96259,0,-68.1478 0/0:41:41,0:41:1643:0:0:0,-12.3422,-148.099 dDocent_Contig_285 51 . A T 80.8961 . AB=0.185185;ABP=26.2531;AC=1;AF=0.166667;AN=6;AO=5;CIGAR=1X;DP=60;DPB=60;DPRA=1.63636;EPP=13.8677;EPPR=122.441;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=193;QR=2202;RO=55;RPL=5;RPP=13.8677;RPPR=122.441;RPR=0;RUN=1;SAF=5;SAP=13.8677;SAR=0;SRF=55;SRP=122.441;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:27:22,5:22:881:5:193:-9.61249,0,-71.4732 0/0:21:21,0:21:834:0:0:0,-6.32163,-75.3751 0/0:12:12,0:12:487:0:0:0,-3.61236,-44.1811 dDocent_Contig_286 7 . T C 5756.89 . AB=0.408397;ABP=41.2017;AC=3;AF=0.5;AN=6;AO=214;CIGAR=1X;DP=524;DPB=524;DPRA=0;EPP=467.705;EPPR=669.652;GTI=0;LEN=1;MEANALT=1.66667;MQM=59.9626;MQMR=60;NS=3;NUMALT=1;ODDS=2.77556e-17;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=8203;QR=11624;RO=307;RPL=0;RPP=467.705;RPPR=669.652;RPR=214;RUN=1;SAF=214;SAP=467.705;SAR=0;SRF=307;SRP=669.652;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:238:152,84:152:5780:84:3212:-217.811,0,-448.759 0/1:143:76,66:76:2861:66:2530:-184.759,0,-214.527 0/1:143:79,64:79:2983:64:2461:-178.642,0,-225.598 dDocent_Contig_287 19 . C A 139.771 . AB=0.195122;ABP=36.112;AC=2;AF=0.333333;AN=6;AO=10;CIGAR=1X;DP=72;DPB=72;DPRA=0;EPP=24.725;EPPR=137.642;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=400;QR=2508;RO=62;RPL=0;RPP=24.725;RPPR=137.642;RPR=10;RUN=1;SAF=10;SAP=24.725;SAR=0;SRF=62;SRP=137.642;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:31:29,2:29:1166:2:77:0,-2.0231,-97.907 0/1:23:19,4:19:774:4:163:-8.13474,0,-63.0553 0/1:18:14,4:14:568:4:160:-9.36526,0,-46.0437 dDocent_Contig_288 9 . T A 75.0962 . AB=0.133333;ABP=125.626;AC=3;AF=0.5;AN=6;AO=14;CIGAR=1X;DP=105;DPB=105;DPRA=0;EPP=33.4109;EPPR=200.614;GTI=0;LEN=1;MEANALT=1;MQM=42.5714;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=0;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=544;QR=3479;RO=91;RPL=0;RPP=33.4109;RPPR=200.614;RPR=14;RUN=1;SAF=14;SAP=33.4109;SAR=0;SRF=91;SRP=200.614;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:51:45,6:45:1724:6:233:-4.87624,0,-140.064 0/1:32:28,4:28:1062:4:155:-4.65509,0,-86.2522 0/1:22:18,4:18:693:4:156:-3.49607,0,-56.0791 dDocent_Contig_289 9 . C T 22084.4 . AB=0.131175;ABP=1390.16;AC=1;AF=0.166667;AN=6;AO=154;CIGAR=1X2M1X2M1X;DP=1174;DPB=1174;DPRA=0;EPP=337.417;EPPR=626.223;GTI=0;LEN=1;MEANALT=6.33333;MQM=60;MQMR=60;NS=3;NUMALT=2;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=5964;QR=11252;RO=287;RPL=0;RPP=337.417;RPPR=626.223;RPR=154;RUN=1;SAF=154;SAP=337.417;SAR=0;SRF=287;SRP=626.223;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|0:630:184,57,380:184:7202:57,380:2216,14829:-1163.51,-1036.81,-1611.81,0,-410.07,-477.773 1|0:264:46,51,163:46:1808:51,163:1964,6374:-522.721,-375.316,-508.679,-12.5318,0,-112.185 0|0:280:57,46,168:57:2242:46,168:1784,6623:-527.733,-398.328,-568.903,0,-37.8625,-133.851 dDocent_Contig_294 9 . T C 164.77 . AB=0.219512;ABP=31.0276;AC=2;AF=0.333333;AN=6;AO=13;CIGAR=1X;DP=91;DPB=91;DPRA=0;EPP=31.2394;EPPR=172.385;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=507;QR=2998;RO=78;RPL=0;RPP=31.2394;RPPR=172.385;RPR=13;RUN=1;SAF=13;SAP=31.2394;SAR=0;SRF=78;SRP=172.385;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:50:46,4:46:1772:4:156:0,-0.634211,-145.316 0/1:9:7,2:7:261:2:78:-4.6942,0,-21.1345 0/1:32:25,7:25:965:7:273:-15.3051,0,-77.531 dDocent_Contig_296 17 . G A 421.054 . AB=0.12709;ABP=364.165;AC=2;AF=0.333333;AN=6;AO=40;CIGAR=1X;DP=338;DPB=338;DPRA=0;EPP=89.8692;EPPR=650.109;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=1580;QR=11905;RO=298;RPL=0;RPP=89.8692;RPPR=650.109;RPR=40;RUN=1;SAF=40;SAP=89.8692;SAR=0;SRF=298;SRP=650.109;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:221:196,25:196:7805:25:986:-22.5046,0,-635.5 0/0:39:37,2:37:1467:2:80:0,-4.14838,-124.683 0/1:78:65,13:65:2633:13:514:-23.1237,0,-213.6 dDocent_Contig_297 63 . T C 46.7364 . AB=0.109589;ABP=99.6557;AC=1;AF=0.166667;AN=6;AO=12;CIGAR=1X;DP=157;DPB=157;DPRA=0;EPP=29.068;EPPR=317.874;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=6.93889e-18;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=467;QR=5549;RO=145;RPL=12;RPP=29.068;RPPR=317.874;RPR=0;RUN=1;SAF=12;SAP=29.068;SAR=0;SRF=145;SRP=317.874;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:73:65,8:65:2539:8:309:-6.19651,0,-206.706 0/0:35:34,1:34:1290:1:41:0,-6.44148,-112.276 0/0:49:46,3:46:1720:3:117:0,-3.84009,-144.151 dDocent_Contig_298 111 . T C 2514.8 . AB=0.384615;ABP=37.5868;AC=3;AF=0.5;AN=6;AO=115;CIGAR=1X;DP=299;DPB=299;DPRA=0;EPP=252.73;EPPR=402.561;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=3846;QR=6311;RO=184;RPL=0;RPP=252.73;RPPR=402.561;RPR=115;RUN=1;SAF=0;SAP=252.73;SAR=115;SRF=0;SRP=402.561;SRR=184;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:172:99,73:99:3374:73:2471:-170.874,0,-252.098 0/1:45:26,19:26:914:19:588:-39.6674,0,-69.0298 0/1:82:59,23:59:2023:23:787:-46.4618,0,-157.653 dDocent_Contig_299 80 . T C 594.815 . AB=0.163462;ABP=309.94;AC=3;AF=0.5;AN=6;AO=51;CIGAR=1X;DP=312;DPB=312;DPRA=0;EPP=113.755;EPPR=569.765;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=1755;QR=9060;RO=261;RPL=51;RPP=113.755;RPPR=569.765;RPR=0;RUN=1;SAF=51;SAP=113.755;SAR=0;SRF=261;SRP=569.765;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:149:127,22:127:4436:22:759:-23.7763,0,-354.566 0/1:92:76,16:76:2676:16:541:-21.3174,0,-213.395 0/1:71:58,13:58:1948:13:455:-19.9107,0,-154.218 dDocent_Contig_300 19 . G A 2091.23 . AB=0.445122;ABP=7.30028;AC=3;AF=0.5;AN=6;AO=73;CIGAR=1X3M1X;DP=164;DPB=164;DPRA=0;EPP=161.528;EPPR=139.813;GTI=0;LEN=1;MEANALT=2.33333;MQM=60;MQMR=60;NS=3;NUMALT=2;ODDS=0;PAIRED=1;PAIREDR=0.952381;PAO=0;PQA=0;PQR=0;PRO=0;QA=2802;QR=2412;RO=63;RPL=0;RPP=161.528;RPPR=139.813;RPR=73;RUN=1;SAF=73;SAP=161.528;SAR=0;SRF=63;SRP=139.813;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|1:91:31,45,13:31:1198:45,13:1709,512:-130.784,0,-84.8275,-97.9935,-56.2522,-192.462 0|1:46:28,10,8:28:1057:10,8:390,321:-23.6231,0,-83.5877,-5.59814,-60.1439,-89.7971 1|0:27:4,18,5:4:157:18,5:703,201:-60.2382,-3.66136,-11.1509,-44.8756,0,-56.2831 dDocent_Contig_301 7 . T G 11948.8 . AB=0.131687;ABP=575.653;AC=2;AF=0.333333;AN=6;AO=64;CIGAR=1X1M1X;DP=486;DPB=486;DPRA=0;EPP=141.985;EPPR=102.898;GTI=0;LEN=1;MEANALT=2.33333;MQM=60;MQMR=60;NS=3;NUMALT=2;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=2053;QR=1760;RO=46;RPL=0;RPP=141.985;RPPR=102.898;RPR=64;RUN=1;SAF=64;SAP=141.985;SAR=0;SRF=46;SRP=102.898;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 1|0:285:22,31,231:22:846:31,231:929,8871:-726.365,-658.75,-718.875,-4.71072,0,-4.66435 0|0:79:15,13,51:15:568:13,51:431,1962:-156.611,-126.276,-168.929,0,-11.7535,-31.24 1|0:122:9,20,93:9:346:20,93:693,3561:-317.427,-263.826,-286.211,-27.8736,0,-28.2955 dDocent_Contig_302 11 . T C 169.667 . AB=0.0949153;ABP=843.937;AC=1;AF=0.166667;AN=6;AO=179;CIGAR=1X;DP=2520;DPB=2520;DPRA=0;EPP=391.704;EPPR=5073.4;GTI=0;LEN=1;MEANALT=2;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=0.992291;PAO=0;PQA=0;PQR=0;PRO=0;QA=7003;QR=92075;RO=2335;RPL=0;RPP=391.704;RPPR=5073.4;RPR=179;RUN=1;SAF=179;SAP=391.704;SAR=0;SRF=2335;SRP=5073.4;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:1178:1109,68:1109:43705:68:2638:0,-117.129,-3692.03 0/1:590:533,56:533:21003:56:2181:-18.7906,0,-1710.95 0/0:752:693,55:693:27367:55:2184:0,-28.818,-2264.05 dDocent_Contig_303 105 . N T 144.404 . AB=0;ABP=0;AC=2;AF=1;AN=2;AO=5;CIGAR=2X;DP=5;DPB=5;DPRA=0;EPP=13.8677;EPPR=0;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=0;NS=1;NUMALT=1;ODDS=8.07091;PAIRED=1;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=157;QR=0;RO=0;RPL=0;RPP=13.8677;RPPR=0;RPR=5;RUN=1;SAF=0;SAP=13.8677;SAR=5;SRF=0;SRP=0;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL .:.:.:.:.:.:.:. .:.:.:.:.:.:.:. 1|1:5:0,5:0:0:5:157:-14.4403,-1.50515,0 dDocent_Contig_304 18 . C T 54.2646 . AB=0.214286;ABP=12.937;AC=1;AF=0.166667;AN=6;AO=3;CIGAR=1X;DP=48;DPB=48;DPRA=0.823529;EPP=9.52472;EPPR=100.727;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=58.9333;NS=3;NUMALT=1;ODDS=0;PAIRED=0;PAIREDR=0.666667;PAO=0;PQA=0;PQR=0;PRO=0;QA=123;QR=1799;RO=45;RPL=0;RPP=9.52472;RPPR=100.727;RPR=3;RUN=1;SAF=3;SAP=9.52472;SAR=0;SRF=45;SRP=100.727;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:25:25,0:25:1015:0:0:0,-7.52575,-89.2064 0/1:14:11,3:11:437:3:123:-7.25037,0,-35.4668 0/0:9:9,0:9:347:0:0:0,-2.70927,-31.588 dDocent_Contig_306 29 . A C 223.87 . AB=0.172414;ABP=30.0414;AC=3;AF=0.5;AN=6;AO=5;CIGAR=1X6M;DP=53;DPB=53;DPRA=0;EPP=13.8677;EPPR=83.3548;GTI=0;LEN=1;MEANALT=2;MQM=60;MQMR=60;NS=3;NUMALT=3;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=199;QR=1446;RO=37;RPL=0;RPP=13.8677;RPPR=83.3548;RPR=5;RUN=1;SAF=5;SAP=13.8677;SAR=0;SRF=37;SRP=83.3548;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|1:11:8,0,3,0:8:307:0,3,0:0,114,0:-7.31959,-9.72783,-34.9269,0,-25.5798,-24.6767,-9.72783,-34.9269,-25.5798,-34.9269 0|1:29:23,0,0,5:23:899:0,0,5:0,0,199:-9.66846,-16.5922,-90.5284,-16.5922,-90.5284,-90.5284,0,-74.1396,-74.1396,-72.6344 0|1:13:6,3,4,0:6:240:3,4,0:119,155,0:-10.9217,-2.92793,-21.8028,0,-9.97775,-18.5686,-12.7279,-22.7059,-19.7727,-32.5023 dDocent_Contig_307 8 . T C 93.5824 . AB=0.107914;ABP=188.617;AC=1;AF=0.166667;AN=6;AO=19;CIGAR=1X;DP=222;DPB=222;DPRA=0;EPP=44.2683;EPPR=443.819;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=0.894737;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=738;QR=7805;RO=203;RPL=0;RPP=44.2683;RPPR=443.819;RPR=19;RUN=1;SAF=19;SAP=44.2683;SAR=0;SRF=203;SRP=443.819;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:139:124,15:124:4773:15:582:-10.8797,0,-387.758 0/0:13:12,1:12:458:1:39:0,-0.0168255,-37.673 0/0:70:67,3:67:2574:3:117:0,-10.1617,-220.945 dDocent_Contig_308 20 . T C 2363.73 . AB=0.757576;ABP=60.0608;AC=3;AF=0.5;AN=6;AO=75;CIGAR=1X;DP=99;DPB=99;DPRA=0;EPP=165.871;EPPR=55.1256;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=3009;QR=953;RO=24;RPL=0;RPP=165.871;RPPR=55.1256;RPR=75;RUN=1;SAF=75;SAP=165.871;SAR=0;SRF=24;SRP=55.1256;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:48:13,35:13:510:35:1402:-111.982,0,-31.7907 0/1:32:8,24:8:321:24:968:-77.7875,0,-19.6238 0/1:19:3,16:3:122:16:639:-52.1264,0,-5.65292 dDocent_Contig_310 49 . A G 73.1556 . AB=0.25;ABP=11.6962;AC=1;AF=0.166667;AN=6;AO=4;CIGAR=1X;DP=49;DPB=49;DPRA=0.969697;EPP=3.0103;EPPR=62.1226;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=0.755556;PAO=0;PQA=0;PQR=0;PRO=0;QA=151;QR=1751;RO=45;RPL=0;RPP=11.6962;RPPR=100.727;RPR=4;RUN=1;SAF=2;SAP=3.0103;SAR=2;SRF=40;SRP=62.1226;SRR=5;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:24:24,0:24:951:0:0:0,-7.22472,-85.8914 0/0:9:9,0:9:346:0:0:0,-2.70927,-31.4965 0/1:16:12,4:12:454:4:151:-9.13946,0,-36.3869 dDocent_Contig_311 11 . C G 1794.84 . AB=0.381215;ABP=25.1929;AC=3;AF=0.5;AN=6;AO=69;CIGAR=1X;DP=181;DPB=181;DPRA=0;EPP=152.842;EPPR=244.044;GTI=0;LEN=1;MEANALT=1.33333;MQM=59.3043;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=2679;QR=4438;RO=111;RPL=0;RPP=152.842;RPPR=244.044;RPR=69;RUN=1;SAF=69;SAP=152.842;SAR=0;SRF=111;SRP=244.044;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:101:70,31:70:2800:31:1204:-75.8051,0,-221.704 0/1:28:16,12:16:632:12:461:-33.4041,0,-48.7841 0/1:52:25,26:25:1006:26:1014:-75.7972,0,-75.0728 dDocent_Contig_312 126 . T A 68.251 . AB=0.142857;ABP=72.8076;AC=2;AF=0.333333;AN=6;AO=9;CIGAR=1X1M1X;DP=69;DPB=69;DPRA=5.25;EPP=22.5536;EPPR=133.299;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=318;QR=2035;RO=60;RPL=0;RPP=22.5536;RPPR=133.299;RPR=9;RUN=1;SAF=0;SAP=22.5536;SAR=9;SRF=0;SRP=133.299;SRR=60;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|1:48:42,6:42:1409:6:213:-5.06705,0,-112.653 0|0:6:6,0:6:208:0:0:0,-1.80618,-19.0596 0|1:15:12,3:12:418:3:105:-5.28071,0,-33.4385 dDocent_Contig_313 9 . G A 3695.08 . AB=0.390582;ABP=40.5509;AC=3;AF=0.5;AN=6;AO=141;CIGAR=1X;DP=361;DPB=361;DPRA=0;EPP=309.188;EPPR=480.734;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=5366;QR=8385;RO=220;RPL=0;RPP=309.188;RPPR=480.734;RPR=141;RUN=1;SAF=141;SAP=309.188;SAR=0;SRF=220;SRP=480.734;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:123:78,45:78:2995:45:1702:-116.415,0,-232.688 0/1:150:94,56:94:3604:56:2150:-148.574,0,-279.327 0/1:88:48,40:48:1786:40:1514:-110.043,0,-134.5 dDocent_Contig_314 33 . C T 124.534 . AB=0.186047;ABP=39.8243;AC=2;AF=0.333333;AN=6;AO=8;CIGAR=1X;DP=50;DPB=50;DPRA=3.07143;EPP=20.3821;EPPR=94.2121;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=0.75;PAIREDR=0.857143;PAO=0;PQA=0;PQR=0;PRO=0;QA=313;QR=1671;RO=42;RPL=0;RPP=20.3821;RPPR=94.2121;RPR=8;RUN=1;SAF=8;SAP=20.3821;SAR=0;SRF=42;SRP=94.2121;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:33:28,5:28:1121:5:198:-8.26339,0,-91.241 0/1:10:7,3:7:276:3:115:-7.71291,0,-22.199 0/0:7:7,0:7:274:0:0:0,-2.10721,-25.0274 dDocent_Contig_315 20 . G A 346.238 . AB=0.2;ABP=30.3709;AC=2;AF=0.333333;AN=6;AO=7;CIGAR=1M1I6M1X4M;DP=68;DPB=69.5833;DPRA=0;EPP=18.2106;EPPR=109.412;GTI=0;LEN=1;MEANALT=2;MQM=60;MQMR=60;NS=3;NUMALT=2;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=265;QR=1917;RO=49;RPL=0;RPP=18.2106;RPPR=109.412;RPR=7;RUN=1;SAF=7;SAP=18.2106;SAR=0;SRF=49;SRP=109.412;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|0:33:23,0,10:23:901:0,10:0,393:-25.7943,-32.718,-106.804,0,-74.4778,-71.4675 0|1:12:6,4,1:6:235:4,1:151,36:-10.6418,0,-18.2111,-9.50688,-16.4779,-28.5592 0|1:23:20,3,0:20:781:3,0:114,0:-3.70779,0,-63.6854,-9.72839,-64.5885,-73.9359 dDocent_Contig_316 13 . A G 4475.47 . AB=0.448276;ABP=11.0972;AC=3;AF=0.5;AN=6;AO=156;CIGAR=1X;DP=348;DPB=348;DPRA=0;EPP=341.76;EPPR=419.933;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=6192;QR=7653;RO=192;RPL=0;RPP=341.76;RPPR=419.933;RPR=156;RUN=1;SAF=156;SAP=341.76;SAR=0;SRF=192;SRP=419.933;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:205:129,76:129:5157:76:3007:-209.009,0,-402.264 0/1:30:11,19:11:447:19:743:-58.1545,0,-31.5552 0/1:113:52,61:52:2049:61:2442:-185.906,0,-150.586 dDocent_Contig_317 40 . C A 344.493 . AB=0.239437;ABP=44.88;AC=3;AF=0.5;AN=6;AO=17;CIGAR=1X;DP=71;DPB=71;DPRA=0;EPP=39.9253;EPPR=120.27;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=669;QR=2149;RO=54;RPL=0;RPP=39.9253;RPPR=120.27;RPR=17;RUN=1;SAF=17;SAP=39.9253;SAR=0;SRF=54;SRP=120.27;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:39:27,12:27:1089:12:468:-30.7273,0,-86.5541 0/1:14:12,2:12:478:2:81:-3.47131,0,-39.1558 0/1:18:15,3:15:582:3:120:-5.76877,0,-47.2907 dDocent_Contig_318 50 . A T 466.101 . AB=0.414634;ABP=5.60547;AC=2;AF=0.333333;AN=6;AO=17;CIGAR=2X;DP=51;DPB=51;DPRA=2.05;EPP=39.9253;EPPR=76.8404;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=686;QR=1340;RO=34;RPL=17;RPP=39.9253;RPPR=76.8404;RPR=0;RUN=1;SAF=17;SAP=39.9253;SAR=0;SRF=34;SRP=76.8404;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|1:23:11,12:11:446:12:483:-36.8985,0,-33.5725 0|0:10:10,0:10:387:0:0:0,-3.0103,-35.1843 0|1:18:13,5:13:507:5:203:-13.2345,0,-40.558 dDocent_Contig_319 12 . G A 2605.56 . AB=0.457286;ABP=6.16385;AC=3;AF=0.5;AN=6;AO=91;CIGAR=1X;DP=199;DPB=199;DPRA=0;EPP=200.614;EPPR=237.529;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=3613;QR=4279;RO=108;RPL=0;RPP=200.614;RPPR=237.529;RPR=91;RUN=1;SAF=91;SAP=200.614;SAR=0;SRF=108;SRP=237.529;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:131:58,73:58:2309:73:2901:-221.76,0,-168.542 0/1:13:11,2:11:418:2:74:-3.11238,0,-34.0532 0/1:55:39,16:39:1552:16:638:-41.1956,0,-123.369 dDocent_Contig_320 8 . C T 34665.1 . AB=0.709091;ABP=608.693;AC=3;AF=0.5;AN=6;AO=1131;CIGAR=1X1M;DP=1595;DPB=1595;DPRA=0;EPP=2458.95;EPPR=726.111;GTI=0;LEN=1;MEANALT=5.33333;MQM=60;MQMR=60;NS=3;NUMALT=2;ODDS=0;PAIRED=0.983201;PAIREDR=0.975976;PAO=0;PQA=0;PQR=0;PRO=0;QA=43511;QR=12786;RO=333;RPL=0;RPP=2458.95;RPPR=726.111;RPR=1131;RUN=1;SAF=1131;SAP=2458.95;SAR=0;SRF=333;SRP=726.111;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|1:933:170,51,675:170:6523:51,675:1925,25989:-2082.7,-1976.11,-2496.18,0,-377.663,-332.231 0|1:210:47,8,148:47:1819:8,148:305,5678:-451.897,-441.025,-588.042,0,-124.407,-104.874 0|1:452:116,17,308:116:4444:17,308:657,11844:-937.436,-918.392,-1278,0,-310.757,-272.003 dDocent_Contig_321 12 . C T 63.7603 . AB=0.147059;ABP=39.7976;AC=1;AF=0.166667;AN=6;AO=10;CIGAR=1X;DP=270;DPB=270;DPRA=2.2551;EPP=24.725;EPPR=567.593;GTI=0;LEN=1;MEANALT=1;MQM=55.6;MQMR=59.9538;NS=3;NUMALT=1;ODDS=0;PAIRED=0;PAIREDR=0.907692;PAO=0;PQA=0;PQR=0;PRO=0;QA=397;QR=10360;RO=260;RPL=0;RPP=24.725;RPPR=567.593;RPR=10;RUN=1;SAF=10;SAP=24.725;SAR=0;SRF=260;SRP=567.593;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:187:182,5:182:7230:5:196:0,-38.3962,-632.413 0/1:34:29,5:29:1166:5:201:-8.19993,0,-94.9853 0/0:49:49,0:49:1964:0:0:0,-14.7505,-176.955 dDocent_Contig_322 27 . T C 1798.63 . AB=0.641304;ABP=18.9659;AC=3;AF=0.5;AN=6;AO=59;CIGAR=1X;DP=92;DPB=92;DPRA=0;EPP=131.127;EPPR=74.6689;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=2357;QR=1305;RO=33;RPL=0;RPP=131.127;RPPR=74.6689;RPR=59;RUN=1;SAF=59;SAP=131.127;SAR=0;SRF=33;SRP=74.6689;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:36:20,16:20:781:16:645:-47.547,0,-59.7619 0/1:25:8,17:8:325:17:668:-52.9194,0,-22.0939 0/1:31:5,26:5:199:26:1044:-84.9198,0,-8.95551 dDocent_Contig_323 17 . C T 3506.25 . AB=0.316667;ABP=125.626;AC=3;AF=0.5;AN=6;AO=133;CIGAR=1X;DP=420;DPB=420;DPRA=0;EPP=291.816;EPPR=626.223;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=5355;QR=11560;RO=287;RPL=0;RPP=291.816;RPPR=626.223;RPR=133;RUN=1;SAF=133;SAP=291.816;SAR=0;SRF=287;SRP=626.223;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:303:191,112:191:7728:112:4503:-313.972,0,-603.863 0/1:48:39,9:39:1571:9:364:-18.6753,0,-127.175 0/1:69:57,12:57:2261:12:488:-23.5004,0,-182.885 dDocent_Contig_325 23 . T G 60.2856 . AB=0.25;ABP=9.52472;AC=1;AF=0.166667;AN=6;AO=3;CIGAR=1X;DP=33;DPB=33;DPRA=1.14286;EPP=9.52472;EPPR=68.1545;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=123;QR=1206;RO=30;RPL=0;RPP=9.52472;RPPR=68.1545;RPR=3;RUN=1;SAF=3;SAP=9.52472;SAR=0;SRF=30;SRP=68.1545;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:16:16,0:16:648:0:0:0,-4.81648,-58.6537 0/0:5:5,0:5:202:0:0:0,-1.50515,-18.5615 0/1:12:9,3:9:356:3:123:-7.85243,0,-28.7852 dDocent_Contig_326 32 . C T 9697.8 . AB=0.83959;ABP=296.5;AC=4;AF=0.666667;AN=6;AO=303;CIGAR=1X1M1X;DP=355;DPB=355;DPRA=0;EPP=660.966;EPPR=88.4369;GTI=0;LEN=1;MEANALT=2.33333;MQM=59.9769;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=0;PAIREDR=0.957447;PAO=0;PQA=0;PQR=0;PRO=0;QA=11916;QR=1831;RO=47;RPL=0;RPP=660.966;RPPR=88.4369;RPR=303;RUN=1;SAF=303;SAP=660.966;SAR=0;SRF=47;SRP=105.07;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|1:171:21,148:21:808:148:5804:-470.936,0,-21.7861 1|1:62:3,57:3:120:57:2227:-189.423,-7.2794,0 0|1:122:23,98:23:903:98:3885:-312.944,0,-44.8497 dDocent_Contig_327 22 . A G 2861.25 . AB=0.141667;ABP=136.845;AC=1;AF=0.166667;AN=6;AO=17;CIGAR=1X1M1X;DP=120;DPB=120;DPRA=0;EPP=39.9253;EPPR=39.9253;GTI=0;LEN=1;MEANALT=2;MQM=60;MQMR=60;NS=3;NUMALT=2;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=642;QR=665;RO=17;RPL=0;RPP=39.9253;RPPR=39.9253;RPR=17;RUN=1;SAF=17;SAP=39.9253;SAR=0;SRF=17;SRP=39.9253;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|0:65:8,3,54:8:313:3,54:102,2119:-171.883,-166.023,-190.851,0,-17.5111,-9.51248 1|0:17:0,5,12:0:0:5,12:191,481:-55.6903,-40.0247,-38.5196,-16.0528,0,-12.4404 0|0:38:9,9,20:9:352:9,20:349,809:-64.0029,-38.0451,-64.2706,0,-0.269898,-22.9199 dDocent_Contig_328 13 . C T 30.5202 . AB=0.125;ABP=42.0968;AC=1;AF=0.166667;AN=6;AO=6;CIGAR=1X;DP=99;DPB=99;DPRA=0;EPP=16.0391;EPPR=204.957;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=0;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=232;QR=3682;RO=93;RPL=0;RPP=16.0391;RPPR=204.957;RPR=6;RUN=1;SAF=6;SAP=16.0391;SAR=0;SRF=93;SRP=204.957;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:44:43,1:43:1696:1:35:0,-9.74669,-149.376 0/0:23:22,1:22:866:1:40:0,-2.92801,-74.2605 0/1:32:28,4:28:1120:4:157:-4.87554,0,-91.4539 dDocent_Contig_330 14 . T G 222.244 . AB=0;ABP=0;AC=6;AF=1;AN=6;AO=34;CIGAR=1X1M1X;DP=34;DPB=34;DPRA=0;EPP=76.8404;EPPR=0;GTI=0;LEN=1;MEANALT=1;MQM=7;MQMR=0;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=1328;QR=0;RO=0;RPL=0;RPP=76.8404;RPPR=0;RPR=34;RUN=1;SAF=34;SAP=76.8404;SAR=0;SRF=0;SRP=0;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 1|1:11:0,11:0:0:11:430:-6.9975,-3.31133,0 1|1:8:0,8:0:0:8:301:-5.1073,-2.40824,0 1|1:15:0,15:0:0:15:597:-9.51749,-4.51545,0 dDocent_Contig_331 41 . T C 4043.32 . AB=0.560166;ABP=10.5879;AC=3;AF=0.5;AN=6;AO=135;CIGAR=1X1M;DP=241;DPB=241;DPRA=0;EPP=296.159;EPPR=204.957;GTI=0;LEN=1;MEANALT=2.33333;MQM=60;MQMR=60;NS=3;NUMALT=2;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=5323;QR=3576;RO=93;RPL=0;RPP=296.159;RPPR=204.957;RPR=135;RUN=1;SAF=135;SAP=296.159;SAR=0;SRF=93;SRP=204.957;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|1:98:27,3,68:27:1048:3,68:121,2644:-209.075,-207.228,-292.434,0,-76.1201,-65.6258 0|1:80:46,3,30:46:1776:3,30:121,1187:-83.8116,-87.684,-232.622,0,-135.854,-136.799 0|1:63:20,6,37:20:752:6,37:237,1492:-116.969,-103.489,-163.282,0,-42.0887,-50.456 dDocent_Contig_334 1 . N A 71.0727 . AB=0;ABP=0;AC=4;AF=1;AN=4;AO=4;CIGAR=1X;DP=4;DPB=4;DPRA=0;EPP=11.6962;EPPR=0;GTI=0;LEN=1;MEANALT=1;MQM=18;MQMR=0;NS=2;NUMALT=1;ODDS=0;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=140;QR=0;RO=0;RPL=0;RPP=11.6962;RPPR=0;RPR=4;RUN=1;SAF=0;SAP=11.6962;SAR=4;SRF=0;SRP=0;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 1/1:2:0,2:0:0:2:68:-3.39776,-0.60206,0 ./.:.:.:.:.:.:.:. 1/1:2:0,2:0:0:2:72:-3.40723,-0.60206,0 dDocent_Contig_335 110 . A G 40.1288 . AB=0.173913;ABP=24.253;AC=1;AF=0.166667;AN=6;AO=4;CIGAR=1X;DP=49;DPB=49;DPRA=1.76923;EPP=11.6962;EPPR=100.727;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=0;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=138;QR=1198;RO=45;RPL=0;RPP=11.6962;RPPR=100.727;RPR=4;RUN=1;SAF=0;SAP=11.6962;SAR=4;SRF=0;SRP=100.727;SRR=45;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:21:21,0:21:554:0:0:0,-6.32163,-50.1163 0/1:23:19,4:19:517:4:138:-5.83671,0,-39.8694 0/0:5:5,0:5:127:0:0:0,-1.50515,-11.6831 dDocent_Contig_337 37 . A C 112.662 . AB=0.139241;ABP=92.3155;AC=3;AF=0.5;AN=6;AO=11;CIGAR=1X;DP=79;DPB=79;DPRA=0;EPP=26.8965;EPPR=150.67;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=438;QR=2674;RO=68;RPL=0;RPP=26.8965;RPPR=150.67;RPR=11;RUN=1;SAF=11;SAP=26.8965;SAR=0;SRF=68;SRP=150.67;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:35:31,4:31:1207:4:159:-4.1557,0,-98.3727 0/1:23:19,4:19:750:4:160:-7.85923,0,-60.9007 0/1:21:18,3:18:717:3:119:-4.77287,0,-58.534 dDocent_Contig_339 68 . T A 1508.87 . AB=0.275618;ABP=126.769;AC=3;AF=0.5;AN=6;AO=78;CIGAR=1X;DP=283;DPB=283;DPRA=0;EPP=172.385;EPPR=448.162;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=2674;QR=7167;RO=205;RPL=78;RPP=172.385;RPPR=448.162;RPR=0;RUN=1;SAF=78;SAP=172.385;SAR=0;SRF=205;SRP=448.162;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:169:114,55:114:3970:55:1884:-118.966,0,-306.62 0/1:42:29,13:29:1024:13:446:-27.8257,0,-79.8301 0/1:72:62,10:62:2173:10:344:-9.6183,0,-174.163 dDocent_Contig_340 107 . N A 569.991 . AB=0;ABP=0;AC=6;AF=1;AN=6;AO=22;CIGAR=1X;DP=23;DPB=23;DPRA=0;EPP=50.7827;EPPR=0;GTI=0;LEN=1;MEANALT=1.33333;MQM=60;MQMR=0;NS=3;NUMALT=1;ODDS=1.0842e-19;PAIRED=1;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=621;QR=0;RO=0;RPL=0;RPP=50.7827;RPPR=0;RPR=22;RUN=1;SAF=0;SAP=50.7827;SAR=22;SRF=0;SRP=0;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 1/1:16:0,15:0:0:15:464:-41.9749,-4.51545,0 1/1:3:0,3:0:0:3:32:-2.98664,-0.90309,0 1/1:4:0,4:0:0:4:125:-11.56,-1.20412,0 dDocent_Contig_341 10 . C G 1345.67 . AB=0.554217;ABP=5.12945;AC=3;AF=0.5;AN=6;AO=46;CIGAR=1X;DP=83;DPB=83;DPRA=0;EPP=102.898;EPPR=83.3548;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=1823;QR=1478;RO=37;RPL=0;RPP=102.898;RPPR=83.3548;RPR=46;RUN=1;SAF=46;SAP=102.898;SAR=0;SRF=37;SRP=83.3548;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:42:21,21:21:849:21:820:-61.4641,0,-64.0751 0/1:13:5,8:5:201:8:320:-25.2543,0,-14.5577 0/1:28:11,17:11:428:17:683:-53.3716,0,-30.4381 dDocent_Contig_342 63 . T A 267.724 . AB=0.169231;ABP=126.55;AC=2;AF=0.333333;AN=6;AO=44;CIGAR=1X;DP=393;DPB=393;DPRA=0;EPP=98.5551;EPPR=760.854;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=1517;QR=12053;RO=349;RPL=44;RPP=98.5551;RPPR=760.854;RPR=0;RUN=1;SAF=44;SAP=98.5551;SAR=0;SRF=349;SRP=760.854;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:263:241,22:241:8318:22:753:0,-11.0842,-680.596 0/1:32:24,8:24:817:8:279:-15.816,0,-64.2108 0/1:98:84,14:84:2918:14:485:-14.4792,0,-233.367 dDocent_Contig_343 2 . A G 90.9797 . AB=0;ABP=0;AC=4;AF=1;AN=4;AO=3;CIGAR=1X1I1X;DP=3;DPB=4.5;DPRA=0;EPP=9.52472;EPPR=0;GTI=0;LEN=1;MEANALT=1;MQM=49;MQMR=0;NS=2;NUMALT=1;ODDS=0;PAIRED=0.333333;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=97;QR=0;RO=0;RPL=0;RPP=9.52472;RPPR=0;RPR=3;RUN=1;SAF=3;SAP=9.52472;SAR=0;SRF=0;SRP=0;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 1|1:1:0,1:0:0:1:34:-3.39891,-0.30103,0 .:.:.:.:.:.:.:. 1|1:2:0,2:0:0:2:63:-5.39631,-0.60206,0 dDocent_Contig_344 45 . G C 11980.6 . AB=0.766871;ABP=305.511;AC=3;AF=0.5;AN=6;AO=375;CIGAR=1X3M;DP=489;DPB=489;DPRA=0;EPP=668.471;EPPR=183.243;GTI=0;LEN=1;MEANALT=4.33333;MQM=60;MQMR=60;NS=3;NUMALT=2;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=14921;QR=3153;RO=83;RPL=18;RPP=668.471;RPPR=183.243;RPR=357;RUN=1;SAF=375;SAP=817.312;SAR=0;SRF=83;SRP=183.243;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|1:308:62,12,229:62:2385:12,229:457,9147:-734.72,-715.901,-908.076,0,-158.333,-126.882 0|1:50:5,3,39:5:184:3,39:120,1549:-126.026,-117.646,-131.784,0,-5.14462,-3.29966 0|1:131:16,8,107:16:584:8,107:288,4225:-342.835,-324.159,-369.452,0,-24.2157,-15.499 dDocent_Contig_346 10 . G C 774.902 . AB=0.113485;ABP=974.928;AC=3;AF=0.5;AN=6;AO=85;CIGAR=1X;DP=749;DPB=749;DPRA=0;EPP=187.585;EPPR=1431.84;GTI=0;LEN=1;MEANALT=2.33333;MQM=57.1765;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=0.995441;PAO=0;PQA=0;PQR=0;PRO=0;QA=3418;QR=25840;RO=658;RPL=0;RPP=187.585;RPPR=1431.84;RPR=85;RUN=1;SAF=85;SAP=187.585;SAR=0;SRF=658;SRP=1431.84;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:304:262,41:262:10318:41:1640:-55.8061,0,-836.361 0/1:226:198,25:198:7704:25:1008:-23.4129,0,-625.477 0/1:219:198,19:198:7818:19:770:-3.79176,0,-637.509 dDocent_Contig_347 8 . C T 1085.12 . AB=0.171504;ABP=358.244;AC=3;AF=0.5;AN=6;AO=65;CIGAR=1X;DP=379;DPB=379;DPRA=0;EPP=144.156;EPPR=682.681;GTI=0;LEN=1;MEANALT=1.33333;MQM=59.7538;MQMR=59.7157;NS=3;NUMALT=1;ODDS=0;PAIRED=0.907692;PAIREDR=0.897764;PAO=0;PQA=0;PQR=0;PRO=0;QA=2524;QR=11936;RO=313;RPL=0;RPP=144.156;RPPR=682.681;RPR=65;RUN=1;SAF=65;SAP=144.156;SAR=0;SRF=313;SRP=682.681;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:174:138,36:138:5251:36:1398:-73.711,0,-420.107 0/1:96:79,16:79:3019:16:619:-27.1628,0,-242.985 0/1:109:96,13:96:3666:13:507:-13.161,0,-297.238 dDocent_Contig_348 21 . C T 1834.76 . AB=0.0645161;ABP=54.0749;AC=0;AF=0;AN=6;AO=2;CIGAR=1X3M1X;DP=144;DPB=144;DPRA=0;EPP=7.35324;EPPR=170.214;GTI=0;LEN=1;MEANALT=2;MQM=60;MQMR=60;NS=3;NUMALT=2;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=77;QR=3055;RO=77;RPL=0;RPP=7.35324;RPPR=170.214;RPR=2;RUN=1;SAF=2;SAP=7.35324;SAR=0;SRF=77;SRP=170.214;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|0:70:45,0,25:45:1800:0,25:0,984:-67.7764,-81.3227,-229.601,0,-148.674,-141.148 0|0:43:18,0,25:18:703:0,25:0,985:-76.0017,-81.4202,-139.205,0,-58.1766,-50.6508 0|0:31:14,2,15:14:552:2,15:77,600:-45.2204,-43.1142,-87.9239,0,-39.1013,-40.9071 dDocent_Contig_349 10 . G A 54.2646 . AB=0.214286;ABP=12.937;AC=1;AF=0.166667;AN=6;AO=3;CIGAR=1X;DP=56;DPB=56;DPRA=0.666667;EPP=9.52472;EPPR=118.098;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=0;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=123;QR=2123;RO=53;RPL=0;RPP=9.52472;RPPR=118.098;RPR=3;RUN=1;SAF=3;SAP=9.52472;SAR=0;SRF=53;SRP=118.098;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:25:25,0:25:1001:0:0:0,-7.52575,-90.3871 0/1:14:11,3:11:441:3:123:-7.25037,0,-35.8306 0/0:17:17,0:17:681:0:0:0,-5.11751,-61.6185 dDocent_Contig_350 65 . T G 1434.36 . AB=0.0909091;ABP=66.97;AC=0;AF=0;AN=6;AO=4;CIGAR=2X3M1X;DP=65;DPB=65;DPRA=0;EPP=11.6962;EPPR=31.2394;GTI=0;LEN=1;MEANALT=2;MQM=60;MQMR=60;NS=3;NUMALT=2;ODDS=0;PAIRED=0;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=149;QR=466;RO=13;RPL=4;RPP=11.6962;RPPR=31.2394;RPR=0;RUN=1;SAF=4;SAP=11.6962;SAR=0;SRF=13;SRP=31.2394;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|0:44:7,4,33:7:249:4,33:149,1287:-103.696,-93.6075,-112.688,0,-8.07578,-10.3454 0|0:6:1,0,5:1:39:0,5:0,194:-16.026,-16.327,-19.5332,0,-3.59553,-2.09038 0|0:15:5,0,10:5:178:0,10:0,370:-29.1324,-30.6376,-45.1387,0,-14.8616,-11.8513 dDocent_Contig_351 44 . G A 114.723 . AB=0.157895;ABP=60.9543;AC=2;AF=0.333333;AN=6;AO=12;CIGAR=1X;DP=185;DPB=185;DPRA=0;EPP=29.068;EPPR=378.675;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=461;QR=6221;RO=173;RPL=0;RPP=29.068;RPPR=378.675;RPR=12;RUN=1;SAF=12;SAP=29.068;SAR=0;SRF=173;SRP=378.675;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:128:125,3:125:4622:3:112:0,-28.0861,-405.516 0/1:22:19,3:19:558:3:115:-4.10055,0,-43.8638 0/1:35:29,6:29:1041:6:234:-10.8934,0,-83.429 dDocent_Contig_352 34 . T C 65.6962 . AB=0.2;ABP=18.6449;AC=1;AF=0.166667;AN=6;AO=4;CIGAR=1X;DP=107;DPB=107;DPRA=0.45977;EPP=11.6962;EPPR=226.672;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=59.5437;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=0.990291;PAO=0;PQA=0;PQR=0;PRO=0;QA=156;QR=4104;RO=103;RPL=0;RPP=11.6962;RPPR=226.672;RPR=4;RUN=1;SAF=4;SAP=11.6962;SAR=0;SRF=103;SRP=226.672;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:62:62,0:62:2486:0:0:0,-18.6639,-221.355 0/1:20:16,4:16:616:4:156:-8.39352,0,-49.7436 0/0:25:25,0:25:1002:0:0:0,-7.52575,-90.4725 dDocent_Contig_353 13 . T C 224.916 . AB=0.243902;ABP=26.3669;AC=1;AF=0.166667;AN=6;AO=11;CIGAR=1X;DP=77;DPB=77;DPRA=2.25;EPP=26.8965;EPPR=146.327;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=410;QR=2360;RO=66;RPL=0;RPP=26.8965;RPPR=146.327;RPR=11;RUN=1;SAF=11;SAP=26.8965;SAR=0;SRF=66;SRP=146.327;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:41:31,10:31:1130:10:400:-24.0145,0,-89.6587 0/0:14:14,0:14:455:0:0:0,-4.21442,-41.2595 0/0:22:21,1:21:775:1:10:0,-5.62266,-69.0743 dDocent_Contig_354 109 . A C 1300.13 . AB=0.30137;ABP=78.06;AC=3;AF=0.5;AN=6;AO=66;CIGAR=1X;DP=219;DPB=219;DPRA=0;EPP=146.327;EPPR=335.246;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=1.38778e-17;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=2228;QR=5406;RO=153;RPL=0;RPP=146.327;RPPR=335.246;RPR=66;RUN=1;SAF=0;SAP=146.327;SAR=66;SRF=0;SRP=335.246;SRR=153;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:112:82,30:82:2888:30:1031:-59.3856,0,-226.435 0/1:50:35,15:35:1247:15:509:-31.0827,0,-97.4806 0/1:57:36,21:36:1271:21:688:-45.068,0,-97.5272 dDocent_Contig_355 23 . G T 145.228 . AB=0;ABP=0;AC=2;AF=0.333333;AN=6;AO=4;CIGAR=1X;DP=43;DPB=43;DPRA=0.205128;EPP=11.6962;EPPR=87.6977;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=59.9487;NS=3;NUMALT=1;ODDS=1.69407e-21;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=152;QR=1561;RO=39;RPL=0;RPP=11.6962;RPPR=87.6977;RPR=4;RUN=1;SAF=4;SAP=11.6962;SAR=0;SRF=39;SRP=87.6977;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 1/1:4:0,4:0:0:4:152:-14.0456,-1.20412,0 0/0:16:16,0:16:643:0:0:0,-4.81648,-58.2054 0/0:23:23,0:23:918:0:0:0,-6.92369,-82.9156 dDocent_Contig_356 13 . T C 13449.4 . AB=0.84596;ABP=414.691;AC=4;AF=0.666667;AN=6;AO=412;CIGAR=1X;DP=477;DPB=477;DPRA=0;EPP=897.657;EPPR=144.156;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=0.997573;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=16452;QR=2349;RO=65;RPL=0;RPP=897.657;RPPR=144.156;RPR=412;RUN=1;SAF=412;SAP=897.657;SAR=0;SRF=65;SRP=144.156;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:295:46,249:46:1659:249:9940:-805.147,0,-60.7752 1/1:81:4,77:4:135:77:3078:-264.619,-11.9013,0 0/1:101:15,86:15:555:86:3434:-278.694,0,-19.8818 dDocent_Contig_357 32 . G A 1036.21 . AB=0.45679;ABP=4.32391;AC=3;AF=0.5;AN=6;AO=37;CIGAR=1X;DP=81;DPB=81;DPRA=0;EPP=83.3548;EPPR=98.5551;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=6.93889e-18;PAIRED=0;PAIREDR=0.386364;PAO=0;PQA=0;PQR=0;PRO=0;QA=1472;QR=1772;RO=44;RPL=0;RPP=83.3548;RPPR=98.5551;RPR=37;RUN=1;SAF=37;SAP=83.3548;SAR=0;SRF=44;SRP=98.5551;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:30:16,14:16:635:14:564:-42.0708,0,-48.4533 0/1:13:7,6:7:286:6:241:-18.1529,0,-22.2014 0/1:38:21,17:21:851:17:667:-48.92,0,-65.4622 dDocent_Contig_358 84 . T C 84.0653 . AB=0.227273;ABP=17.2236;AC=1;AF=0.166667;AN=6;AO=5;CIGAR=1X;DP=58;DPB=58;DPRA=1.22222;EPP=13.8677;EPPR=118.098;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=180;QR=1855;RO=53;RPL=5;RPP=13.8677;RPPR=118.098;RPR=0;RUN=1;SAF=5;SAP=13.8677;SAR=0;SRF=53;SRP=118.098;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:22:17,5:17:598:5:180:-9.9294,0,-47.5258 0/0:13:13,0:13:464:0:0:0,-3.91339,-42.0978 0/0:23:23,0:23:793:0:0:0,-6.92369,-71.6852 dDocent_Contig_359 17 . T A 816.504 . AB=0.132505;ABP=569.594;AC=3;AF=0.5;AN=6;AO=64;CIGAR=1X;DP=483;DPB=483;DPRA=0;EPP=141.985;EPPR=910.686;GTI=0;LEN=1;MEANALT=1.33333;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=2.77556e-17;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=2575;QR=16802;RO=418;RPL=0;RPP=141.985;RPPR=910.686;RPR=64;RUN=1;SAF=64;SAP=141.985;SAR=0;SRF=418;SRP=910.686;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:255:225,29:225:9065:29:1165:-28.2556,0,-738.396 0/1:67:54,13:54:2192:13:524:-27.3379,0,-177.271 0/1:161:139,22:139:5545:22:886:-31.5798,0,-450.395 dDocent_Contig_360 32 . T C 193.911 . AB=0.32;ABP=10.0459;AC=1;AF=0.166667;AN=6;AO=9;CIGAR=1X;DP=50;DPB=50;DPRA=1.77273;EPP=22.5536;EPPR=92.0407;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=0;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=352;QR=1628;RO=41;RPL=0;RPP=22.5536;RPPR=92.0407;RPR=9;RUN=1;SAF=9;SAP=22.5536;SAR=0;SRF=41;SRP=92.0407;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:25:17,8:17:681:8:312:-20.9131,0,-54.0954 0/0:11:11,0:11:437:0:0:0,-3.31133,-39.6849 0/0:14:13,1:13:510:1:40:0,-0.218741,-42.25 dDocent_Contig_361 144 . G A 423.965 . AB=0.221053;ABP=67.2173;AC=3;AF=0.5;AN=6;AO=21;CIGAR=1X;DP=95;DPB=95;DPRA=0;EPP=48.6112;EPPR=163.699;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=838;QR=2888;RO=74;RPL=0;RPP=48.6112;RPPR=163.699;RPR=21;RUN=1;SAF=0;SAP=48.6112;SAR=21;SRF=0;SRP=163.699;SRR=74;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:33:29,4:29:1129:4:147:-3.65471,0,-91.956 0/1:35:31,4:31:1206:4:163:-4.52238,0,-98.2707 0/1:27:14,13:14:553:13:528:-39.7387,0,-41.9793 dDocent_Contig_362 74 . G A 2935.83 . AB=0.639752;ABP=30.3223;AC=3;AF=0.5;AN=6;AO=103;CIGAR=1X4M;DP=161;DPB=161;DPRA=0;EPP=226.672;EPPR=111.584;GTI=0;LEN=1;MEANALT=2.33333;MQM=60;MQMR=60;NS=3;NUMALT=2;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=3833;QR=1688;RO=50;RPL=103;RPP=226.672;RPPR=111.584;RPR=0;RUN=1;SAF=103;SAP=226.672;SAR=0;SRF=50;SRP=111.584;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|1:107:31,0,73:31:1059:0,73:0,2783:-219.065,-228.397,-314.33,0,-86.0052,-64.0301 0|1:17:6,0,11:6:203:0,11:0,392:-30.4871,-32.2933,-48.7449,0,-16.7961,-13.4848 0|1:37:13,5,19:13:426:5,19:176,658:-49.5535,-39.1375,-72.0411,0,-20.0639,-28.6792 dDocent_Contig_363 18 . G C 3551.16 . AB=0.675824;ABP=51.8804;AC=3;AF=0.5;AN=6;AO=123;CIGAR=1X;DP=182;DPB=182;DPRA=0;EPP=270.101;EPPR=131.127;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=4607;QR=2247;RO=59;RPL=0;RPP=270.101;RPPR=131.127;RPR=123;RUN=1;SAF=123;SAP=270.101;SAR=0;SRF=59;SRP=131.127;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:102:36,66:36:1373:66:2477:-192.43,0,-93.1428 0/1:16:6,10:6:225:10:366:-28.4667,0,-15.7919 0/1:64:17,47:17:649:47:1764:-139.742,0,-39.4793 dDocent_Contig_364 19 . T A 2695.06 . AB=0.221818;ABP=372.698;AC=3;AF=0.5;AN=6;AO=122;CIGAR=1X;DP=550;DPB=550;DPRA=0;EPP=267.93;EPPR=912.939;GTI=0;LEN=1;MEANALT=1.33333;MQM=60;MQMR=59.8407;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=0.995316;PAO=0;PQA=0;PQR=0;PRO=0;QA=4889;QR=17126;RO=427;RPL=0;RPP=267.93;RPPR=930.229;RPR=122;RUN=1;SAF=122;SAP=267.93;SAR=0;SRF=425;SRP=912.939;SRR=2;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:287:238,48:238:9559:48:1915:-86.0476,0,-771.542 0/1:89:64,25:64:2561:25:1006:-64.0451,0,-203.829 0/1:174:125,49:125:5006:49:1968:-124.936,0,-398.022 dDocent_Contig_365 108 . G A 157.642 . AB=0;ABP=0;AC=2;AF=1;AN=2;AO=6;CIGAR=2X1D1M;DP=6;DPB=4.5;DPRA=0;EPP=16.0391;EPPR=0;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=0;NS=1;NUMALT=1;ODDS=8.76405;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=172;QR=0;RO=0;RPL=0;RPP=16.0391;RPPR=0;RPR=6;RUN=1;SAF=0;SAP=16.0391;SAR=6;SRF=0;SRP=0;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL .:.:.:.:.:.:.:. .:.:.:.:.:.:.:. 1|1:6:0,6:0:0:6:172:-15.7641,-1.80618,0 dDocent_Contig_366 17 . C G 1262.97 . AB=0.236515;ABP=148.337;AC=3;AF=0.5;AN=6;AO=57;CIGAR=1X;DP=241;DPB=241;DPRA=0;EPP=126.784;EPPR=402.561;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=59.8641;NS=3;NUMALT=1;ODDS=0;PAIRED=0.596491;PAIREDR=0.967391;PAO=0;PQA=0;PQR=0;PRO=0;QA=2260;QR=7344;RO=184;RPL=0;RPP=126.784;RPPR=402.561;RPR=57;RUN=1;SAF=57;SAP=126.784;SAR=0;SRF=184;SRP=402.561;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:152:125,27:125:4993:27:1064:-50.2897,0,-403.45 0/1:42:19,23:19:758:23:912:-69.7455,0,-55.8967 0/1:47:40,7:40:1593:7:284:-11.785,0,-129.458 dDocent_Contig_367 18 . G A 277.206 . AB=0.0466667;ABP=270.767;AC=0;AF=0;AN=6;AO=7;CIGAR=2X;DP=160;DPB=160;DPRA=7.5;EPP=18.2106;EPPR=287.473;GTI=0;LEN=1;MEANALT=2.5;MQM=60;MQMR=60;NS=3;NUMALT=2;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=282;QR=5202;RO=131;RPL=0;RPP=18.2106;RPPR=287.473;RPR=7;RUN=1;SAF=7;SAP=18.2106;SAR=0;SRF=131;SRP=287.473;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|0:99:80,5,13:80:3168:5,13:202,508:-17.677,-25.1016,-284.322,0,-244.068,-256.808 0|0:10:10,0,0:10:399:0,0:0,0:0,-3.0103,-36.2677,-3.0103,-36.2677,-36.2677 0|0:51:41,2,8:41:1635:2,8:80,315:-13.5666,-19.3176,-153.364,0,-128.053,-132.235 dDocent_Contig_386 111 . A T 53.779 . AB=0.375;ABP=4.09604;AC=1;AF=0.166667;AN=6;AO=3;CIGAR=1X;DP=28;DPB=28;DPRA=0.8;EPP=9.52472;EPPR=57.2971;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=103;QR=862;RO=25;RPL=0;RPP=9.52472;RPPR=57.2971;RPR=3;RUN=1;SAF=0;SAP=9.52472;SAR=3;SRF=0;SRP=57.2971;SRR=25;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:14:14,0:14:489:0:0:0,-4.21442,-44.3421 0/1:8:5,3:5:170:3:103:-7.20178,0,-13.2266 0/0:6:6,0:6:203:0:0:0,-1.80618,-18.602 dDocent_Contig_388 7 . T C 3944.6 . AB=0.594714;ABP=20.6978;AC=3;AF=0.5;AN=6;AO=135;CIGAR=1X;DP=227;DPB=227;DPRA=0;EPP=296.159;EPPR=202.786;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=1.38778e-17;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=5195;QR=3512;RO=92;RPL=0;RPP=296.159;RPPR=202.786;RPR=135;RUN=1;SAF=135;SAP=296.159;SAR=0;SRF=92;SRP=202.786;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:121:55,66:55:2105:66:2545:-192.818,0,-153.256 0/1:60:23,37:23:868:37:1415:-109.569,0,-60.375 0/1:46:14,32:14:539:32:1235:-97.5953,0,-35.0078 dDocent_Contig_390 18 . G A 37.0574 . AB=0.131579;ABP=47.8112;AC=2;AF=0.333333;AN=6;AO=5;CIGAR=1X;DP=47;DPB=47;DPRA=2.11111;EPP=13.8677;EPPR=94.2121;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=3.46945e-18;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=198;QR=1676;RO=42;RPL=0;RPP=13.8677;RPPR=94.2121;RPR=5;RUN=1;SAF=5;SAP=13.8677;SAR=0;SRF=42;SRP=94.2121;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:20:17,3:17:674:3:117:-4.88923,0,-54.966 0/1:18:16,2:16:634:2:81:-2.26719,0,-51.9736 0/0:9:9,0:9:368:0:0:0,-2.70927,-33.4854 dDocent_Contig_391 16 . A T 1582.15 . AB=0.7;ABP=30.8051;AC=3;AF=0.5;AN=6;AO=56;CIGAR=1X;DP=80;DPB=80;DPRA=0;EPP=124.613;EPPR=55.1256;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=2076;QR=943;RO=24;RPL=0;RPP=124.613;RPPR=55.1256;RPR=56;RUN=1;SAF=56;SAP=124.613;SAR=0;SRF=24;SRP=55.1256;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:44:8,36:8:307:36:1327:-106.47,0,-14.7389 0/1:16:6,10:6:237:10:377:-29.4632,0,-16.8867 0/1:20:10,10:10:399:10:372:-27.8049,0,-30.2468 dDocent_Contig_392 8 . T A 611.535 . AB=0.390625;ABP=9.66043;AC=3;AF=0.5;AN=6;AO=25;CIGAR=1X;DP=64;DPB=64;DPRA=0;EPP=57.2971;EPPR=87.6977;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=943;QR=1496;RO=39;RPL=0;RPP=57.2971;RPPR=87.6977;RPR=25;RUN=1;SAF=25;SAP=57.2971;SAR=0;SRF=39;SRP=87.6977;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:23:13,10:13:500:10:380:-27.63,0,-38.4246 0/1:28:18,10:18:686:10:369:-25.127,0,-53.6439 0/1:13:8,5:8:310:5:194:-13.9195,0,-24.3502 dDocent_Contig_393 11 . G A 10972.4 . AB=0.793023;ABP=323.701;AC=3;AF=0.5;AN=6;AO=341;CIGAR=1X;DP=430;DPB=430;DPRA=0;EPP=743.482;EPPR=196.271;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=13694;QR=3515;RO=89;RPL=0;RPP=743.482;RPPR=196.271;RPR=341;RUN=1;SAF=341;SAP=743.482;SAR=0;SRF=89;SRP=196.271;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:255:37,218:37:1489:218:8736:-708.953,0,-57.49 0/1:44:14,30:14:558:30:1202:-95.2096,0,-37.3133 0/1:131:38,93:38:1468:93:3756:-298.603,0,-92.9256 dDocent_Contig_394 18 . C A 111.879 . AB=0.0508475;ABP=106.394;AC=0;AF=0;AN=6;AO=3;CIGAR=1X3M1X;DP=97;DPB=97;DPRA=2.45833;EPP=9.52472;EPPR=170.214;GTI=0;LEN=1;MEANALT=4;MQM=28.6667;MQMR=60;NS=3;NUMALT=3;ODDS=0;PAIRED=0;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=119;QR=3039;RO=77;RPL=0;RPP=9.52472;RPPR=170.214;RPR=3;RUN=1;SAF=3;SAP=9.52472;SAR=0;SRF=77;SRP=170.214;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|0:59:47,3,2,6:47:1850:3,2,6:119,82,239:-3.69729,-11.1509,-162.437,-11.0666,-156.571,-162.682,0,-145.507,-145.45,-150.413 0|0:14:7,0,3,4:7:272:0,3,4:0,120,162:-11.0105,-13.1177,-35.4611,-3.23231,-25.5748,-24.6717,0,-22.3407,-12.4526,-21.1365 0|0:24:23,0,0,1:23:917:0,0,1:0,0,38:0,-6.92369,-82.4634,-6.92369,-82.4634,-82.4634,-3.4886,-79.403,-79.403,-79.102 dDocent_Contig_395 98 . N A 1572.85 . AB=0;ABP=0;AC=6;AF=1;AN=6;AO=50;CIGAR=1X;DP=50;DPB=50;DPRA=0;EPP=111.584;EPPR=0;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=0;NS=3;NUMALT=1;ODDS=1.69407e-21;PAIRED=1;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=1730;QR=0;RO=0;RPL=50;RPP=111.584;RPPR=0;RPR=0;RUN=1;SAF=50;SAP=111.584;SAR=0;SRF=0;SRP=0;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 1/1:30:0,30:0:0:30:1035:-93.46,-9.0309,0 1/1:6:0,6:0:0:6:210:-19.2425,-1.80618,0 1/1:14:0,14:0:0:14:485:-43.98,-4.21442,0 dDocent_Contig_396 16 . A T 5409.23 . AB=0.885714;ABP=229.154;AC=4;AF=0.666667;AN=6;AO=167;CIGAR=1X;DP=187;DPB=187;DPRA=0;EPP=365.646;EPPR=46.4397;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=6629;QR=808;RO=20;RPL=0;RPP=365.646;RPPR=46.4397;RPR=167;RUN=1;SAF=167;SAP=365.646;SAR=0;SRF=20;SRP=46.4397;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:124:14,110:14:567:110:4335:-352.776,0,-14.0451 1/1:12:0,12:0:0:12:487:-44.1806,-3.61236,0 0/1:51:6,45:6:241:45:1807:-147.489,0,-6.71377 dDocent_Contig_398 16 . G A 1918.04 . AB=0.375661;ABP=28.3901;AC=3;AF=0.5;AN=6;AO=71;CIGAR=1X1M1X;DP=189;DPB=189;DPRA=0;EPP=157.185;EPPR=252.73;GTI=0;LEN=1;MEANALT=1.66667;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=2808;QR=4263;RO=115;RPL=0;RPP=157.185;RPPR=252.73;RPR=71;RUN=1;SAF=71;SAP=157.185;SAR=0;SRF=115;SRP=252.73;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|1:88:54,34:54:2044:34:1341:-94.4603,0,-157.705 0|1:48:32,13:32:1201:13:512:-32.5661,0,-94.5404 0|1:53:29,24:29:1018:24:955:-70.3006,0,-75.9617 dDocent_Contig_400 25 . C G 214.497 . AB=0.146789;ABP=121.126;AC=2;AF=0.333333;AN=6;AO=17;CIGAR=1X;DP=171;DPB=171;DPRA=0;EPP=39.9253;EPPR=337.417;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=674;QR=6111;RO=154;RPL=0;RPP=39.9253;RPPR=337.417;RPR=17;RUN=1;SAF=17;SAP=39.9253;SAR=0;SRF=154;SRP=337.417;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:94:82,12:82:3284:12:475:-14.7966,0,-267.31 0/1:15:11,4:11:437:4:159:-10.176,0,-35.1672 0/0:62:61,1:61:2390:1:40:0,-14.6682,-211.251 dDocent_Contig_401 50 . A G 2130.46 . AB=0.731959;ABP=48.3426;AC=3;AF=0.5;AN=6;AO=71;CIGAR=1X;DP=97;DPB=97;DPRA=0;EPP=148.621;EPPR=59.4686;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=6.93889e-18;PAIRED=0.971831;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=2735;QR=1024;RO=26;RPL=71;RPP=157.185;RPPR=59.4686;RPR=0;RUN=1;SAF=70;SAP=148.621;SAR=1;SRF=26;SRP=59.4686;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:55:7,48:7:276:48:1877:-152.586,0,-8.64744 0/1:9:1,8:1:40:8:285:-23.2778,0,-1.28641 0/1:33:18,15:18:708:15:573:-41.9639,0,-54.111 dDocent_Contig_402 14 . G A 59.7768 . AB=0.0984848;ABP=187.849;AC=1;AF=0.166667;AN=6;AO=13;CIGAR=1X;DP=215;DPB=215;DPRA=3.18072;EPP=31.2394;EPPR=424.448;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=6.93889e-18;PAIRED=0;PAIREDR=0.920792;PAO=0;PQA=0;PQR=0;PRO=0;QA=521;QR=7985;RO=202;RPL=0;RPP=31.2394;RPPR=441.648;RPR=13;RUN=1;SAF=13;SAP=31.2394;SAR=0;SRF=200;SRP=424.448;SRR=2;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:132:119,13:119:4729:13:521:-7.50056,0,-385.782 0/0:35:35,0:35:1336:0:0:0,-10.536,-120.501 0/0:48:48,0:48:1920:0:0:0,-14.4494,-172.998 dDocent_Contig_403 39 . C T 106.403 . AB=0.107914;ABP=188.617;AC=2;AF=0.333333;AN=6;AO=15;CIGAR=1X;DP=148;DPB=148;DPRA=7.72222;EPP=35.5824;EPPR=291.816;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=614;QR=5261;RO=133;RPL=0;RPP=35.5824;RPPR=291.816;RPR=15;RUN=1;SAF=15;SAP=35.5824;SAR=0;SRF=133;SRP=291.816;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:103:92,11:92:3608:11:450:-9.84968,0,-293.723 0/0:9:9,0:9:361:0:0:0,-2.70927,-32.8535 0/1:36:32,4:32:1292:4:164:-4.31282,0,-105.707 dDocent_Contig_404 24 . A T 268.573 . AB=0.478261;ABP=3.10471;AC=1;AF=0.166667;AN=6;AO=11;CIGAR=1X;DP=69;DPB=69;DPRA=1;EPP=26.8965;EPPR=128.956;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=1.73472e-18;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=392;QR=2318;RO=58;RPL=0;RPP=26.8965;RPPR=128.956;RPR=11;RUN=1;SAF=11;SAP=26.8965;SAR=0;SRF=58;SRP=128.956;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:39:39,0:39:1583:0:0:0,-11.7402,-142.699 0/1:23:12,11:12:473:11:392:-28.6812,0,-35.9965 0/0:7:7,0:7:262:0:0:0,-2.10721,-23.9245 dDocent_Contig_405 9 . G A 1567.13 . AB=0.346821;ABP=38.2685;AC=3;AF=0.5;AN=6;AO=60;CIGAR=1X4M;DP=173;DPB=173;DPRA=0;EPP=133.299;EPPR=207.129;GTI=0;LEN=1;MEANALT=3;MQM=60;MQMR=60;NS=3;NUMALT=3;ODDS=2.77556e-17;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=2320;QR=3666;RO=94;RPL=0;RPP=133.299;RPPR=207.129;RPR=60;RUN=1;SAF=60;SAP=133.299;SAR=0;SRF=94;SRP=207.129;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|1:89:51,4,7,24:51:2001:4,7,24:156,258,935:-61.5052,-64.0346,-227.399,-55.771,-207.515,-218.23,0,-151.752,-143.486,-157.35 0|1:36:23,0,0,12:23:882:0,0,12:0,0,461:-30.8968,-37.8205,-110.204,-37.8205,-110.204,-110.204,0,-72.3596,-72.3596,-68.7473 0|1:48:20,3,0,24:20:783:3,0,24:120,0,924:-69.8335,-65.9673,-129.449,-75.8541,-130.352,-140.238,0,-54.4887,-64.375,-57.1502 dDocent_Contig_406 39 . G A 3065.24 . AB=0.881818;ABP=142.3;AC=3;AF=0.5;AN=6;AO=97;CIGAR=1X;DP=110;DPB=110;DPRA=0;EPP=213.643;EPPR=31.2394;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=3821;QR=522;RO=13;RPL=0;RPP=213.643;RPPR=31.2394;RPR=97;RUN=1;SAF=97;SAP=213.643;SAR=0;SRF=13;SRP=31.2394;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:68:6,62:6:242:62:2445:-199.732,0,-1.68691 0/1:17:2,15:2:76:15:582:-47.5967,0,-2.0973 0/1:25:5,20:5:204:20:794:-64.2503,0,-11.2183 dDocent_Contig_408 7 . T C 46.6116 . AB=0.128205;ABP=49.8362;AC=1;AF=0.166667;AN=6;AO=5;CIGAR=1X;DP=81;DPB=81;DPRA=1.85714;EPP=13.8677;EPPR=168.042;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=0.934211;PAO=0;PQA=0;PQR=0;PRO=0;QA=195;QR=2917;RO=76;RPL=0;RPP=13.8677;RPPR=168.042;RPR=5;RUN=1;SAF=5;SAP=13.8677;SAR=0;SRF=76;SRP=168.042;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:39:34,5:34:1299:5:195:-6.18403,0,-105.457 0/0:20:20,0:20:770:0:0:0,-6.0206,-69.6286 0/0:22:22,0:22:848:0:0:0,-6.62266,-76.642 dDocent_Contig_409 91 . G C 240.19 . AB=0.342857;ABP=10.5174;AC=3;AF=0.5;AN=6;AO=12;CIGAR=1X;DP=35;DPB=35;DPRA=0;EPP=29.068;EPPR=52.9542;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=0.869565;PAO=0;PQA=0;PQR=0;PRO=0;QA=417;QR=797;RO=23;RPL=12;RPP=29.068;RPPR=52.9542;RPR=0;RUN=1;SAF=12;SAP=29.068;SAR=0;SRF=23;SRP=52.9542;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:16:8,8:8:272:8:277:-20.4505,0,-19.995 0/1:10:9,1:9:315:1:35:-0.488329,0,-25.6785 0/1:9:6,3:6:210:3:105:-7.08689,0,-16.5332 dDocent_Contig_410 24 . C G 8855.15 . AB=0.884058;ABP=91.4113;AC=5;AF=0.833333;AN=6;AO=268;CIGAR=1X;DP=288;DPB=288;DPRA=0;EPP=584.965;EPPR=46.4397;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=10557;QR=793;RO=20;RPL=0;RPP=584.965;RPPR=46.4397;RPR=268;RUN=1;SAF=268;SAP=584.965;SAR=0;SRF=20;SRP=46.4397;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 1/1:213:12,201:12:468:201:7930:-670.843,-21.6563,0 1/1:6:0,6:0:0:6:245:-22.4295,-1.80618,0 0/1:69:8,61:8:325:61:2382:-193.765,0,-8.84856 dDocent_Contig_413 47 . G A 675.699 . AB=0.195652;ABP=151.048;AC=3;AF=0.5;AN=6;AO=36;CIGAR=1X;DP=184;DPB=184;DPRA=0;EPP=81.1833;EPPR=324.388;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=1416;QR=5860;RO=148;RPL=0;RPP=81.1833;RPPR=324.388;RPR=36;RUN=1;SAF=36;SAP=81.1833;SAR=0;SRF=148;SRP=324.388;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:74:65,9:65:2567:9:359:-10.3949,0,-208.893 0/1:39:26,13:26:1030:13:513:-34.7759,0,-81.2527 0/1:71:57,14:57:2263:14:544:-27.922,0,-182.457 dDocent_Contig_414 14 . G A 1575.28 . AB=0.504348;ABP=3.02918;AC=3;AF=0.5;AN=6;AO=58;CIGAR=1X;DP=115;DPB=115;DPRA=0;EPP=128.956;EPPR=126.784;GTI=0;LEN=1;MEANALT=1;MQM=54.6207;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=0.844828;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=2317;QR=2249;RO=57;RPL=0;RPP=128.956;RPPR=126.784;RPR=58;RUN=1;SAF=58;SAP=128.956;SAR=0;SRF=57;SRP=126.784;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:63:24,39:24:960:39:1564:-115.451,0,-67.7381 0/1:28:18,10:18:680:10:389:-24.1887,0,-53.0861 0/1:24:15,9:15:609:9:364:-23.4107,0,-47.9232 dDocent_Contig_415 18 . C T 87.9662 . AB=0.333333;ABP=5.9056;AC=1;AF=0.166667;AN=6;AO=4;CIGAR=1X;DP=60;DPB=60;DPRA=0.5;EPP=11.6962;EPPR=124.613;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=154;QR=2236;RO=56;RPL=0;RPP=11.6962;RPPR=124.613;RPR=4;RUN=1;SAF=4;SAP=11.6962;SAR=0;SRF=56;SRP=124.613;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:37:37,0:37:1484:0:0:0,-11.1381,-133.807 0/0:11:11,0:11:426:0:0:0,-3.31133,-38.6898 0/1:12:8,4:8:326:4:154:-10.6205,0,-26.0973 dDocent_Contig_417 34 . T A 808.541 . AB=0.224242;ABP=111.992;AC=3;AF=0.5;AN=6;AO=37;CIGAR=1X;DP=165;DPB=165;DPRA=0;EPP=83.3548;EPPR=280.959;GTI=0;LEN=1;MEANALT=1;MQM=59.8919;MQMR=60;NS=3;NUMALT=1;ODDS=6.93889e-18;PAIRED=0.594595;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=1483;QR=5066;RO=128;RPL=0;RPP=83.3548;RPPR=280.959;RPR=37;RUN=1;SAF=37;SAP=83.3548;SAR=0;SRF=128;SRP=280.959;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:122:94,28:94:3719:28:1118:-64.1757,0,-298.001 0/1:12:11,1:11:418:1:41:-0.482207,0,-34.3464 0/1:31:23,8:23:929:8:324:-20.1969,0,-74.5817 dDocent_Contig_418 26 . T C 7704.8 . AB=0.313793;ABP=90.3484;AC=3;AF=0.5;AN=6;AO=91;CIGAR=1M1I5M1X;DP=290;DPB=328.143;DPRA=0;EPP=200.614;EPPR=52.9542;GTI=0;LEN=1;MEANALT=2.33333;MQM=59.2088;MQMR=60;NS=3;NUMALT=2;ODDS=0;PAIRED=0.956044;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=3498;QR=910;RO=23;RPL=0;RPP=200.614;RPPR=52.9542;RPR=91;RUN=1;SAF=91;SAP=200.614;SAR=0;SRF=23;SRP=52.9542;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 1|0:187:12,68,107:12:475:68,107:2592,4272:-521.161,-312.743,-331.367,-172.927,0,-179.814 1|0:26:0,4,22:0:0:4,22:160,852:-83.546,-70.3643,-69.1601,-13.5793,0,-6.95665 1|0:77:11,19,46:11:435:19,46:746,1812:-171.296,-113.254,-143.334,-25.551,0,-47.5039 dDocent_Contig_420 13 . A C 300.994 . AB=0.126168;ABP=262.775;AC=2;AF=0.333333;AN=6;AO=28;CIGAR=1X;DP=244;DPB=244;DPRA=0;EPP=63.8115;EPPR=469.877;GTI=0;LEN=1;MEANALT=1.33333;MQM=59.75;MQMR=59.6419;NS=3;NUMALT=1;ODDS=0;PAIRED=0;PAIREDR=0.888372;PAO=0;PQA=0;PQR=0;PRO=0;QA=1124;QR=8615;RO=215;RPL=0;RPP=63.8115;RPPR=469.877;RPR=28;RUN=1;SAF=28;SAP=63.8115;SAR=0;SRF=215;SRP=469.877;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:151:131,19:131:5257:19:757:-22.8927,0,-427.38 0/0:30:29,1:29:1162:1:41:0,-4.93633,-100.691 0/1:63:55,8:55:2196:8:326:-10.7295,0,-178.797 dDocent_Contig_421 42 . G A 42.7689 . AB=0.119048;ABP=55.9529;AC=1;AF=0.166667;AN=6;AO=8;CIGAR=1X;DP=398;DPB=398;DPRA=1.11789;EPP=20.3821;EPPR=849.885;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=327;QR=15419;RO=390;RPL=0;RPP=20.3821;RPPR=849.885;RPR=8;RUN=1;SAF=8;SAP=20.3821;SAR=0;SRF=390;SRP=849.885;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:233:230,3:230:9088:3:123:0,-58.6752,-805.915 0/1:42:37,5:37:1467:5:204:-6.10077,0,-119.637 0/0:123:123,0:123:4864:0:0:0,-37.0267,-437.677 dDocent_Contig_422 7 . T G 1516.56 . AB=0.24269;ABP=199.687;AC=2;AF=0.333333;AN=6;AO=90;CIGAR=1X;DP=563;DPB=563;DPRA=0;EPP=198.443;EPPR=1025.77;GTI=0;LEN=1;MEANALT=1.33333;MQM=60;MQMR=59.8344;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=0.980892;PAO=0;PQA=0;PQR=0;PRO=0;QA=3029;QR=17966;RO=471;RPL=0;RPP=198.443;RPPR=1025.77;RPR=90;RUN=1;SAF=90;SAP=198.443;SAR=0;SRF=471;SRP=1025.77;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:221:212,7:212:8106:7:167:0,-51.0189,-712.493 0/1:180:123,57:123:4711:57:1950:-121.566,0,-369.849 0/1:162:136,26:136:5149:26:912:-33.6122,0,-414.652 dDocent_Contig_423 114 . C T 7852.15 . AB=0.868571;ABP=209.499;AC=4;AF=0.666667;AN=6;AO=284;CIGAR=1X;DP=313;DPB=313;DPRA=0;EPP=619.708;EPPR=65.983;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=9551;QR=971;RO=29;RPL=0;RPP=619.708;RPPR=65.983;RPR=284;RUN=1;SAF=0;SAP=619.708;SAR=284;SRF=0;SRP=65.983;SRR=29;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 1/1:138:6,132:6:206:132:4416:-378.76,-22.6654,0 0/1:73:9,64:9:301:64:2122:-169.27,0,-5.44028 0/1:102:14,88:14:464:88:3013:-240.709,0,-11.3727 dDocent_Contig_424 13 . G A 6471.37 . AB=0.545679;ABP=10.3504;AC=3;AF=0.5;AN=6;AO=221;CIGAR=1M1X4M;DP=405;DPB=399.167;DPRA=0;EPP=482.906;EPPR=274.444;GTI=0;LEN=1;MEANALT=4;MQM=60;MQMR=60;NS=3;NUMALT=2;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=8416;QR=4776;RO=125;RPL=0;RPP=482.906;RPPR=274.444;RPR=221;RUN=1;SAF=221;SAP=482.906;SAR=0;SRF=125;SRP=274.444;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|1:227:58,17,137:58:2250:17,137:601,5180:-407.12,-375.645,-555.393,0,-135.948,-143.638 0|1:45:17,6,20:17:653:6,20:223,763:-57.477,-44.3464,-96.143,0,-35.3576,-47.584 0|1:133:50,12,64:50:1873:12,64:439,2473:-188.062,-167.244,-317.016,0,-117.518,-134.123 dDocent_Contig_425 127 . G A 245.3 . AB=0.197917;ABP=79.1023;AC=3;AF=0.5;AN=6;AO=19;CIGAR=1X;DP=96;DPB=96;DPRA=0;EPP=44.2683;EPPR=170.214;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=642;QR=2507;RO=77;RPL=0;RPP=44.2683;RPPR=170.214;RPR=19;RUN=1;SAF=0;SAP=44.2683;SAR=19;SRF=0;SRP=170.214;SRR=77;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:39:27,12:27:858:12:409:-25.398,0,-65.7755 0/1:31:27,4:27:869:4:128:-2.50419,0,-69.177 0/1:26:23,3:23:780:3:105:-1.96938,0,-62.6887 dDocent_Contig_428 9 . G A 893.712 . AB=0.13125;ABP=191.983;AC=0;AF=0;AN=6;AO=21;CIGAR=1X1M2X;DP=274;DPB=274;DPRA=0;EPP=48.6112;EPPR=406.904;GTI=0;LEN=1;MEANALT=5;MQM=60;MQMR=60;NS=3;NUMALT=3;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=806;QR=7233;RO=186;RPL=0;RPP=48.6112;RPPR=406.904;RPR=21;RUN=1;SAF=21;SAP=48.6112;SAR=0;SRF=186;SRP=406.904;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|0:160:94,21,12,31:94:3653:21,12,31:806,460,1226:-72.592,-34.7321,-328.575,-63.1352,-297.142,-359.688,0,-234.012,-262.416,-290.838 0|0:46:40,0,1,5:40:1552:0,1,5:0,38,201:-4.54081,-16.582,-144.083,-13.4691,-140.967,-140.666,0,-127.518,-124.401,-126.013 0|0:68:52,0,6,10:52:2028:0,6,10:0,224,405:-17.7608,-33.4144,-200.103,-15.086,-181.764,-179.958,0,-166.706,-148.367,-163.695 dDocent_Contig_430 12 . A G 1221.46 . AB=0.218045;ABP=186.687;AC=2;AF=0.333333;AN=6;AO=64;CIGAR=1X;DP=345;DPB=345;DPRA=0;EPP=141.985;EPPR=613.194;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=2525;QR=11243;RO=281;RPL=0;RPP=141.985;RPPR=613.194;RPR=64;RUN=1;SAF=64;SAP=141.985;SAR=0;SRF=281;SRP=613.194;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:220:171,49:171:6861:49:1913:-106.121,0,-550.932 0/1:46:37,9:37:1487:9:367:-19.5479,0,-120.227 0/0:79:73,6:73:2895:6:245:0,-1.3519,-238.224 dDocent_Contig_432 112 . C T 56274.4 . AB=0.111675;ABP=261.041;AC=1;AF=0.166667;AN=6;AO=196;CIGAR=1X3M1X;DP=2265;DPB=2265.2;DPRA=0;EPP=428.619;EPPR=0;GTI=0;LEN=1;MEANALT=7;MQM=60;MQMR=0;NS=3;NUMALT=3;ODDS=2.22045e-16;PAIRED=1;PAIREDR=0;PAO=1;PQA=35;PQR=0;PRO=0;QA=6594;QR=0;RO=0;RPL=0;RPP=428.619;RPPR=0;RPR=196;RUN=1;SAF=0;SAP=428.619;SAR=196;SRF=0;SRP=0;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|0:1436:0,129,1242,35:0:0:129,1242,35:4342,39748,1012:-3576.3,-3224.48,-3185.65,-373.879,-22.0386,0,-3495.77,-3143.95,-293.361,-3485.23 1|0:197:0,22,158,11:0:0:22,158,11:726,4880,331:-450.232,-391.534,-384.911,-58.7135,0,-11.1507,-423.76,-365.061,-32.2466,-420.448 0|0:632:0,45,554,18:0:0:45,554,18:1526,17810,568:-1602.44,-1478.69,-1465.14,-166.771,-43.0085,0,-1556.75,-1433,-121.086,-1551.33 dDocent_Contig_434 19 . T C 3334.73 . AB=0.664634;ABP=41.6201;AC=3;AF=0.5;AN=6;AO=109;CIGAR=1X;DP=164;DPB=164;DPRA=0;EPP=239.701;EPPR=122.441;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=6.93889e-18;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=4307;QR=2205;RO=55;RPL=0;RPP=239.701;RPPR=122.441;RPR=109;RUN=1;SAF=109;SAP=239.701;SAR=0;SRF=55;SRP=122.441;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:105:29,76:29:1177:76:3004:-238.83,0,-74.597 0/1:17:5,12:5:199:12:486:-38.9732,0,-13.1705 0/1:42:21,21:21:829:21:817:-61.1933,0,-62.2783 dDocent_Contig_435 14 . G A 115.447 . AB=0.103093;ABP=268.467;AC=2;AF=0.333333;AN=6;AO=20;CIGAR=1X;DP=236;DPB=236;DPRA=2.30952;EPP=46.4397;EPPR=472.048;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=803;QR=8453;RO=216;RPL=0;RPP=46.4397;RPPR=472.048;RPR=20;RUN=1;SAF=20;SAP=46.4397;SAR=0;SRF=216;SRP=472.048;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:131:120,11:120:4697:11:448:-1.24105,0,-383.222 0/0:42:42,0:42:1653:0:0:0,-12.6433,-149.004 0/1:63:54,9:54:2103:9:355:-13.3441,0,-170.488 dDocent_Contig_436 1 . N G 367.051 . AB=0;ABP=0;AC=2;AF=1;AN=2;AO=11;CIGAR=1X;DP=11;DPB=11;DPRA=0;EPP=26.8965;EPPR=0;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=0;NS=1;NUMALT=1;ODDS=12.2298;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=404;QR=0;RO=0;RPL=0;RPP=26.8965;RPPR=0;RPR=11;RUN=1;SAF=0;SAP=26.8965;SAR=11;SRF=0;SRP=0;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 1/1:11:0,11:0:0:11:404:-36.7051,-3.31133,0 ./.:.:.:.:.:.:.:. ./.:.:.:.:.:.:.:. dDocent_Contig_437 16 . C T 664.763 . AB=0.11878;ABP=789.428;AC=3;AF=0.5;AN=6;AO=74;CIGAR=1X;DP=623;DPB=623;DPRA=0;EPP=163.699;EPPR=1195.15;GTI=0;LEN=1;MEANALT=1;MQM=58.1892;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=0.986486;PAIREDR=0.965392;PAO=0;PQA=0;PQR=0;PRO=0;QA=2879;QR=21913;RO=549;RPL=0;RPP=163.699;RPPR=1195.15;RPR=74;RUN=1;SAF=74;SAP=163.699;SAR=0;SRF=549;SRP=1195.15;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:248:219,29:219:8802:29:1145:-28.4652,0,-716.991 0/1:195:171,24:171:6769:24:931:-25.3442,0,-550.221 0/1:180:159,21:159:6342:21:803:-18.1898,0,-516.332 dDocent_Contig_438 29 . A G 1914.95 . AB=0.696629;ABP=32.8985;AC=3;AF=0.5;AN=6;AO=62;CIGAR=1X;DP=89;DPB=89;DPRA=0;EPP=137.642;EPPR=61.6401;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=2476;QR=1069;RO=27;RPL=0;RPP=137.642;RPPR=61.6401;RPR=62;RUN=1;SAF=62;SAP=137.642;SAR=0;SRF=27;SRP=61.6401;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:52:18,34:18:714:34:1365:-107.454,0,-48.9346 0/1:16:2,14:2:79:14:556:-45.5668,0,-2.68076 0/1:21:7,14:7:276:14:555:-43.9678,0,-18.8834 dDocent_Contig_439 9 . G A 8578.09 . AB=0.200542;ABP=290.427;AC=3;AF=0.5;AN=6;AO=74;CIGAR=2X3M;DP=369;DPB=369;DPRA=0;EPP=163.699;EPPR=42.4916;GTI=0;LEN=1;MEANALT=7;MQM=59.973;MQMR=60;NS=3;NUMALT=3;ODDS=0;PAIRED=0.945946;PAIREDR=0.909091;PAO=0;PQA=0;PQR=0;PRO=0;QA=2873;QR=865;RO=22;RPL=0;RPP=163.699;RPPR=50.7827;RPR=74;RUN=1;SAF=74;SAP=163.699;SAR=0;SRF=21;SRP=42.4916;SRR=1;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 1|0:195:12,3,44,113:12:473:3,44,113:122,1731,4424:-462.872,-456.702,-494.716,-324.092,-353.226,-349.763,-103.476,-132.611,0,-108.377 1|0:67:9,14,15,26:9:353:14,15,26:554,571,1022:-98.8432,-57.8837,-82.7013,-54.7201,-40.0844,-79.2366,-17.7992,-3.1637,0,-39.0062 1|0:107:1,3,15,81:1:39:3,15,81:113,571,3149:-301.617,-292.927,-295.23,-255.089,-249.305,-253.779,-43.6211,-37.8387,0,-22.4439 dDocent_Contig_441 19 . G A 3540.29 . AB=0.243478;ABP=397.387;AC=3;AF=0.5;AN=6;AO=168;CIGAR=1X;DP=690;DPB=690;DPRA=0;EPP=367.818;EPPR=1134.35;GTI=0;LEN=1;MEANALT=1.33333;MQM=59.9167;MQMR=59.6372;NS=3;NUMALT=1;ODDS=0;PAIRED=0.970238;PAIREDR=0.973129;PAO=0;PQA=0;PQR=0;PRO=0;QA=6298;QR=20613;RO=521;RPL=0;RPP=367.818;RPPR=1134.35;RPR=168;RUN=1;SAF=168;SAP=367.818;SAR=0;SRF=521;SRP=1134.35;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:318:255,62:255:10110:62:2350:-115.853,0,-812.169 0/1:149:116,33:116:4562:33:1181:-61.672,0,-365.444 0/1:223:150,73:150:5941:73:2767:-182.027,0,-466.757 dDocent_Contig_442 12 . T G 5718.18 . AB=0.733696;ABP=90.294;AC=4;AF=0.666667;AN=6;AO=181;CIGAR=2X3M2X;DP=239;DPB=239;DPRA=0;EPP=396.047;EPPR=61.6401;GTI=0;LEN=1;MEANALT=3.33333;MQM=60;MQMR=60;NS=3;NUMALT=3;ODDS=2.77556e-17;PAIRED=1;PAIREDR=0.925926;PAO=0;PQA=0;PQR=0;PRO=0;QA=7086;QR=1040;RO=27;RPL=0;RPP=396.047;RPPR=61.6401;RPR=181;RUN=1;SAF=181;SAP=396.047;SAR=0;SRF=27;SRP=61.6401;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|1:136:14,11,0,108:14:542:11,0,108:429,0,4243:-344.759,-313.713,-354.919,-348.974,-358.23,-393.491,0,-9.25405,-44.5144,-12.0032 0|1:48:9,7,3,27:9:340:7,3,27:267,122,1047:-83.2971,-64.108,-89.8654,-75.9417,-81.9079,-102.904,0,-5.96363,-17.7948,-19.7337 1|1:55:4,1,4,46:4:158:1,4,46:40,146,1796:-147.285,-145.193,-157.895,-136.565,-146.272,-148.363,-0.835437,-10.5501,-1.93547,0 dDocent_Contig_443 103 . N A 226.397 . AB=0;ABP=0;AC=4;AF=1;AN=4;AO=8;CIGAR=3X2I2X;DP=8;DPB=11.8;DPRA=0;EPP=20.3821;EPPR=0;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=0;NS=2;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=0;PAO=2;PQA=59;PQR=0;PRO=0;QA=248;QR=0;RO=0;RPL=0;RPP=20.3821;RPPR=0;RPR=8;RUN=1;SAF=0;SAP=20.3821;SAR=8;SRF=0;SRP=0;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL .:.:.:.:.:.:.:. 1|1:4:0,4:0:0:4:135:-12.2161,-1.20412,0 1|1:4:0,4:0:0:4:113:-10.1224,-1.20412,0 dDocent_Contig_446 22 . G A 1682.35 . AB=0.28;ABP=108.11;AC=3;AF=0.5;AN=6;AO=70;CIGAR=1X;DP=250;DPB=250;DPRA=0;EPP=155.013;EPPR=393.875;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=2757;QR=7165;RO=180;RPL=0;RPP=155.013;RPPR=393.875;RPR=70;RUN=1;SAF=70;SAP=155.013;SAR=0;SRF=180;SRP=393.875;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:140:94,46:94:3747:46:1845:-124.109,0,-295.09 0/1:45:40,5:40:1616:5:195:-4.37491,0,-132.122 0/1:65:46,19:46:1802:19:717:-45.2734,0,-142.827 dDocent_Contig_447 12 . C G 1683.12 . AB=0.431655;ABP=8.64988;AC=3;AF=0.5;AN=6;AO=60;CIGAR=1X;DP=139;DPB=139;DPRA=0;EPP=133.299;EPPR=174.557;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=2386;QR=3151;RO=79;RPL=0;RPP=133.299;RPPR=174.557;RPR=60;RUN=1;SAF=60;SAP=133.299;SAR=0;SRF=79;SRP=174.557;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:90:49,41:49:1946:41:1644:-121.095,0,-148.236 0/1:11:6,5:6:232:5:197:-14.7936,0,-17.9376 0/1:38:24,14:24:973:14:545:-37.9457,0,-76.4277 dDocent_Contig_448 27 . T A 698.375 . AB=0.296296;ABP=41.936;AC=2;AF=0.333333;AN=6;AO=34;CIGAR=1X;DP=126;DPB=126;DPRA=0;EPP=76.8404;EPPR=202.786;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=6.93889e-18;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=1224;QR=3286;RO=92;RPL=0;RPP=76.8404;RPPR=202.786;RPR=34;RUN=1;SAF=34;SAP=76.8404;SAR=0;SRF=92;SRP=202.786;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:57:41,16:41:1447:16:571:-34.5567,0,-113.342 0/0:18:16,2:16:565:2:55:0,-0.194082,-45.9502 0/1:51:35,16:35:1274:16:598:-38.8028,0,-99.5921 dDocent_Contig_451 13 . G A 51.915 . AB=0.117647;ABP=67.7713;AC=1;AF=0.166667;AN=6;AO=6;CIGAR=1X3M1X;DP=73;DPB=73;DPRA=4.63636;EPP=16.0391;EPPR=146.327;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=3.46945e-18;PAIRED=0.666667;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=241;QR=2562;RO=66;RPL=0;RPP=16.0391;RPPR=146.327;RPR=6;RUN=1;SAF=6;SAP=16.0391;SAR=0;SRF=66;SRP=146.327;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|1:51:45,6:45:1747:6:241:-6.71435,0,-142.114 0|0:7:6,0:6:235:0:0:0,-1.80618,-21.1561 0|0:15:15,0:15:580:0:0:0,-4.51545,-52.5382 dDocent_Contig_452 7 . T C 9324.98 . AB=0.769424;ABP=254.58;AC=3;AF=0.5;AN=6;AO=307;CIGAR=1X3M1X;DP=399;DPB=399;DPRA=0;EPP=669.652;EPPR=189.757;GTI=0;LEN=1;MEANALT=2.33333;MQM=59.9121;MQMR=60;NS=3;NUMALT=1;ODDS=2.77556e-17;PAIRED=0.0358306;PAIREDR=0.837209;PAO=0;PQA=0;PQR=0;PRO=0;QA=11747;QR=3312;RO=86;RPL=0;RPP=669.652;RPPR=189.757;RPR=307;RUN=1;SAF=307;SAP=669.652;SAR=0;SRF=86;SRP=189.757;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|1:181:41,138:41:1585:138:5299:-422.733,0,-88.7371 0|1:91:25,62:25:947:62:2369:-186.876,0,-58.9877 0|1:127:20,107:20:780:107:4079:-328.411,0,-32.297 dDocent_Contig_454 8 . T G 2746.82 . AB=0.346667;ABP=64.2748;AC=3;AF=0.5;AN=6;AO=104;CIGAR=1X3M12I2M;DP=300;DPB=516;DPRA=0;EPP=228.843;EPPR=419.933;GTI=0;LEN=1;MEANALT=2.33333;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=0.994792;PAO=0;PQA=0;PQR=0;PRO=0;QA=4103;QR=7479;RO=192;RPL=0;RPP=228.843;RPPR=419.933;RPR=104;RUN=1;SAF=104;SAP=228.843;SAR=0;SRF=192;SRP=419.933;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|1:175:107,66:107:4186:66:2606:-182.236,0,-324.312 0|1:49:31,18:31:1191:18:713:-49.7505,0,-92.7303 0|1:76:54,20:54:2102:20:784:-48.2179,0,-166.73 dDocent_Contig_455 30 . A G 5668 . AB=0.488722;ABP=3.45113;AC=3;AF=0.5;AN=6;AO=195;CIGAR=1X;DP=399;DPB=399;DPRA=0;EPP=426.447;EPPR=445.991;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=7689;QR=8028;RO=204;RPL=0;RPP=426.447;RPPR=445.991;RPR=195;RUN=1;SAF=195;SAP=426.447;SAR=0;SRF=204;SRP=445.991;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:251:119,132:119:4669:132:5239:-395.824,0,-344.6 0/1:28:21,7:21:826:7:278:-16.9615,0,-66.2267 0/1:120:64,56:64:2533:56:2172:-159.537,0,-191.994 dDocent_Contig_456 12 . A T 241.845 . AB=0.210526;ABP=30.668;AC=1;AF=0.166667;AN=6;AO=8;CIGAR=1X2M;DP=101;DPB=101;DPRA=1.58333;EPP=20.3821;EPPR=178.9;GTI=0;LEN=1;MEANALT=2;MQM=60;MQMR=60;NS=3;NUMALT=3;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=318;QR=3227;RO=81;RPL=0;RPP=20.3821;RPPR=178.9;RPR=8;RUN=1;SAF=8;SAP=20.3821;SAR=0;SRF=81;SRP=178.9;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|1:38:26,4,8,0:26:1042:4,8,0:159,318,0:-18.3523,-13.1082,-97.7528,0,-72.7789,-83.4413,-26.1791,-98.9569,-85.8495,-112.028 0|0:24:24,0,0,0:24:958:0,0,0:0,0,0:0,-7.22472,-86.5233,-7.22472,-86.5233,-86.5233,-7.22472,-86.5233,-86.5233,-86.5233 0|0:39:31,2,0,6:31:1227:2,0,6:79,0,228:-9.35505,-12.1823,-112.577,-18.687,-113.179,-119.68,0,-94.4836,-100.985,-99.1783 dDocent_Contig_457 126 . G T 4466.55 . AB=0.657895;ABP=60.6115;AC=3;AF=0.5;AN=6;AO=175;CIGAR=2X;DP=266;DPB=266;DPRA=0;EPP=383.018;EPPR=200.614;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=5905;QR=2936;RO=91;RPL=0;RPP=383.018;RPPR=200.614;RPR=175;RUN=1;SAF=0;SAP=383.018;SAR=175;SRF=0;SRP=200.614;SRR=91;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|1:162:66,96:66:2106:96:3268:-245.583,0,-141.035 0|1:36:13,23:13:433:23:720:-54.2541,0,-28.4529 0|1:68:12,56:12:397:56:1917:-152.34,0,-15.5796 dDocent_Contig_459 13 . A T 171.711 . AB=0.0740741;ABP=45.5551;AC=0;AF=0;AN=6;AO=2;CIGAR=1X2M1D2M1X8M;DP=191;DPB=189.467;DPRA=0.329268;EPP=7.35324;EPPR=365.646;GTI=0;LEN=1;MEANALT=2;MQM=30;MQMR=60;NS=3;NUMALT=2;ODDS=0;PAIRED=0;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=60;QR=6529;RO=167;RPL=0;RPP=7.35324;RPPR=365.646;RPR=2;RUN=1;SAF=2;SAP=7.35324;SAR=0;SRF=167;SRP=365.646;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|0:100:89,0,8:89:3467:0,8:0,308:0,-26.7917,-311.751,-1.47669,-286.462,-284.054 0|0:27:17,2,8:17:666:2,8:60,294:-18.995,-19.8755,-74.0561,0,-50.6313,-52.4668 0|0:64:61,0,3:61:2396:0,3:0,117:0,-18.3628,-215.433,-8.35554,-205.816,-204.913 dDocent_Contig_460 14 . T C 791.049 . AB=0.238411;ABP=92.7597;AC=3;AF=0.5;AN=6;AO=36;CIGAR=1X;DP=151;DPB=151;DPRA=0;EPP=81.1833;EPPR=250.558;GTI=0;LEN=1;MEANALT=1.33333;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=1435;QR=4531;RO=114;RPL=0;RPP=81.1833;RPPR=250.558;RPR=36;RUN=1;SAF=36;SAP=81.1833;SAR=0;SRF=114;SRP=250.558;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:52:38,14:38:1504:14:550:-34.1824,0,-119.942 0/1:37:28,8:28:1105:8:317:-17.647,0,-88.4959 0/1:62:48,14:48:1922:14:568:-32.7983,0,-154.512 dDocent_Contig_461 40 . G A 145.618 . AB=0.160714;ABP=59.0033;AC=1;AF=0.166667;AN=6;AO=9;CIGAR=2X;DP=82;DPB=82;DPRA=4.30769;EPP=22.5536;EPPR=161.528;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=362;QR=2831;RO=73;RPL=0;RPP=22.5536;RPPR=161.528;RPR=9;RUN=1;SAF=9;SAP=22.5536;SAR=0;SRF=73;SRP=161.528;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|1:56:47,9:47:1843:9:362:-16.0847,0,-149.229 0|0:12:12,0:12:442:0:0:0,-3.61236,-40.11 0|0:14:14,0:14:546:0:0:0,-4.21442,-49.4815 dDocent_Contig_462 130 . T G 64.5725 . AB=0.157895;ABP=60.9543;AC=1;AF=0.166667;AN=6;AO=9;CIGAR=1X;DP=99;DPB=99;DPRA=2.71429;EPP=22.5536;EPPR=198.443;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=276;QR=3051;RO=90;RPL=0;RPP=22.5536;RPPR=198.443;RPR=9;RUN=1;SAF=0;SAP=22.5536;SAR=9;SRF=0;SRP=198.443;SRR=90;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:57:48,9:48:1630:9:276:-7.98012,0,-129.83 0/0:16:16,0:16:546:0:0:0,-4.81648,-49.4639 0/0:26:26,0:26:875:0:0:0,-7.82678,-79.0592 dDocent_Contig_463 1 . N T 116.066 . AB=0;ABP=0;AC=4;AF=1;AN=4;AO=3;CIGAR=1X;DP=3;DPB=3;DPRA=0;EPP=9.52472;EPPR=0;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=0;NS=2;NUMALT=1;ODDS=0;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=117;QR=0;RO=0;RPL=0;RPP=9.52472;RPPR=0;RPR=3;RUN=1;SAF=3;SAP=9.52472;SAR=0;SRF=0;SRP=0;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 1/1:2:0,2:0:0:2:77:-7.3082,-0.60206,0 1/1:1:0,1:0:0:1:40:-3.99568,-0.30103,0 ./.:.:.:.:.:.:.:. dDocent_Contig_464 16 . A C 189.531 . AB=0.196721;ABP=51.7438;AC=2;AF=0.333333;AN=6;AO=12;CIGAR=1X3M1X;DP=100;DPB=100;DPRA=0.782051;EPP=29.068;EPPR=189.757;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=446;QR=3392;RO=86;RPL=0;RPP=29.068;RPPR=189.757;RPR=12;RUN=1;SAF=12;SAP=29.068;SAR=0;SRF=86;SRP=189.757;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|1:45:36,9:36:1419:9:338:-17.2179,0,-114.42 0|1:16:13,3:13:507:3:108:-5.25802,0,-41.1613 0|0:39:37,0:37:1466:0:0:0,-11.1381,-131.799 dDocent_Contig_465 31 . T C 2753.43 . AB=0.370909;ABP=42.8154;AC=3;AF=0.5;AN=6;AO=102;CIGAR=1X;DP=275;DPB=275;DPRA=0;EPP=224.5;EPPR=378.675;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=4032;QR=6910;RO=173;RPL=0;RPP=224.5;RPPR=378.675;RPR=102;RUN=1;SAF=102;SAP=224.5;SAR=0;SRF=173;SRP=378.675;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:136:78,58:78:3106:58:2320:-168.014,0,-238.677 0/1:47:31,16:31:1243:16:610:-41.0778,0,-97.9953 0/1:92:64,28:64:2561:28:1102:-71.7733,0,-202.926 dDocent_Contig_466 12 . T C 251.141 . AB=0.164948;ABP=97.5925;AC=2;AF=0.333333;AN=6;AO=18;CIGAR=1X;DP=138;DPB=138;DPRA=0;EPP=42.0968;EPPR=263.587;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=714;QR=4812;RO=120;RPL=0;RPP=42.0968;RPPR=263.587;RPR=18;RUN=1;SAF=18;SAP=42.0968;SAR=0;SRF=120;SRP=263.587;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:81:67,14:67:2683:14:559:-26.2672,0,-217.197 0/1:16:14,2:14:555:2:75:-2.30311,0,-45.4705 0/0:41:39,2:39:1574:2:80:0,-4.75065,-134.299 dDocent_Contig_467 21 . T C 850.356 . AB=0.415584;ABP=7.77626;AC=3;AF=0.5;AN=6;AO=32;CIGAR=1X;DP=77;DPB=77;DPRA=0;EPP=72.4974;EPPR=100.727;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=1252;QR=1742;RO=45;RPL=0;RPP=72.4974;RPPR=100.727;RPR=32;RUN=1;SAF=32;SAP=72.4974;SAR=0;SRF=45;SRP=100.727;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:51:31,20:31:1186:20:782:-55.3508,0,-91.6726 0/1:10:7,3:7:280:3:114:-7.62099,0,-22.5615 0/1:16:7,9:7:276:9:356:-27.5867,0,-20.3932 dDocent_Contig_468 12 . T C 86.1015 . AB=0.185185;ABP=26.2531;AC=1;AF=0.166667;AN=6;AO=5;CIGAR=1X;DP=87;DPB=87;DPRA=0.9;EPP=13.8677;EPPR=181.071;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=202;QR=3324;RO=82;RPL=0;RPP=13.8677;RPPR=181.071;RPR=5;RUN=1;SAF=5;SAP=13.8677;SAR=0;SRF=82;SRP=181.071;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:50:50,0:50:2032:0:0:0,-15.0515,-183.054 0/0:10:10,0:10:399:0:0:0,-3.0103,-36.2665 0/1:27:22,5:22:893:5:202:-10.4341,0,-72.5486 dDocent_Contig_470 98 . T C 30.5746 . AB=0.8;ABP=6.91895;AC=5;AF=0.833333;AN=6;AO=8;CIGAR=1X;DP=11;DPB=11;DPRA=0;EPP=20.3821;EPPR=5.18177;GTI=0;LEN=1;MEANALT=1.66667;MQM=7;MQMR=40;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=236;QR=41;RO=1;RPL=8;RPP=20.3821;RPPR=5.18177;RPR=0;RUN=1;SAF=8;SAP=20.3821;SAR=0;SRF=1;SRP=5.18177;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 1/1:2:0,1:0:0:1:34:-0.629376,-0.30103,0 1/1:4:0,3:0:0:3:89:-1.88335,-0.90309,0 0/1:5:1,4:1:41:4:113:-1.0627,0,-2.24097 dDocent_Contig_471 7 . T C 43316 . AB=0.325066;ABP=506.711;AC=3;AF=0.5;AN=6;AO=616;CIGAR=1X2M;DP=1895;DPB=1895;DPRA=0;EPP=1340.64;EPPR=304.845;GTI=0;LEN=1;MEANALT=5.66667;MQM=56.7808;MQMR=57.4388;NS=3;NUMALT=3;ODDS=0;PAIRED=0.913961;PAIREDR=0.928058;PAO=0;PQA=0;PQR=0;PRO=0;QA=23366;QR=5243;RO=139;RPL=0;RPP=1340.64;RPPR=304.845;RPR=616;RUN=1;SAF=616;SAP=1340.64;SAR=0;SRF=139;SRP=304.845;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 1|0:927:79,83,254,497:79:2959:83,254,497:3179,9742,19134:-2055.76,-1821.39,-2032.39,-1282.55,-1260.38,-1442.07,-561.019,-538.847,0,-647.39 1|0:336:23,43,131,136:23:863:43,131,136:1639,4754,5143:-726.311,-599.89,-647.642,-350.548,-277.896,-371.807,-321.996,-249.343,0,-341.751 1|0:632:37,47,231,308:37:1421:47,231,308:1802,8870,11885:-1555.05,-1420.78,-1523.28,-841.476,-812.717,-888.589,-608.062,-579.304,0,-631.995 dDocent_Contig_473 99 . N C 435.426 . AB=0;ABP=0;AC=6;AF=1;AN=6;AO=15;CIGAR=1X;DP=15;DPB=15;DPRA=0;EPP=27.4756;EPPR=0;GTI=0;LEN=1;MEANALT=1;MQM=59.4667;MQMR=0;NS=3;NUMALT=1;ODDS=0;PAIRED=0.933333;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=468;QR=0;RO=0;RPL=15;RPP=35.5824;RPPR=0;RPR=0;RUN=1;SAF=14;SAP=27.4756;SAR=1;SRF=0;SRP=0;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 1/1:5:0,5:0:0:5:174:-15.9953,-1.50515,0 1/1:7:0,7:0:0:7:190:-17.3668,-2.10721,0 1/1:3:0,3:0:0:3:104:-9.70309,-0.90309,0 dDocent_Contig_477 14 . G A 110.553 . AB=0.173913;ABP=45.4956;AC=2;AF=0.333333;AN=6;AO=8;CIGAR=1X;DP=55;DPB=55;DPRA=2.55556;EPP=20.3821;EPPR=105.07;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=309;QR=1884;RO=47;RPL=0;RPP=20.3821;RPPR=105.07;RPR=8;RUN=1;SAF=8;SAP=20.3821;SAR=0;SRF=47;SRP=105.07;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:31:28,3:28:1120:3:121:-1.94827,0,-91.7498 0/1:15:10,5:10:400:5:188:-12.7667,0,-31.8429 0/0:9:9,0:9:364:0:0:0,-2.70927,-33.1248 dDocent_Contig_478 12 . A T 150.494 . AB=0.130841;ABP=129.666;AC=2;AF=0.333333;AN=6;AO=14;CIGAR=1X1M1X;DP=127;DPB=127;DPRA=2.675;EPP=33.4109;EPPR=248.387;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=556;QR=4465;RO=113;RPL=0;RPP=33.4109;RPPR=248.387;RPR=14;RUN=1;SAF=14;SAP=33.4109;SAR=0;SRF=113;SRP=248.387;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|1:77:67,10:67:2654:10:395:-12.7279,0,-215.819 0|0:20:20,0:20:781:0:0:0,-6.0206,-70.613 0|1:30:26,4:26:1030:4:161:-5.84437,0,-83.9665 dDocent_Contig_484 1 . N G 61.4413 . AB=0;ABP=0;AC=2;AF=1;AN=2;AO=3;CIGAR=1X;DP=3;DPB=3;DPRA=0;EPP=9.52472;EPPR=0;GTI=0;LEN=1;MEANALT=1;MQM=22;MQMR=0;NS=1;NUMALT=1;ODDS=6.68461;PAIRED=0.333333;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=122;QR=0;RO=0;RPL=0;RPP=9.52472;RPPR=0;RPR=3;RUN=1;SAF=3;SAP=9.52472;SAR=0;SRF=0;SRP=0;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 1/1:3:0,3:0:0:3:122:-6.14359,-0.90309,0 ./.:.:.:.:.:.:.:. ./.:.:.:.:.:.:.:. dDocent_Contig_487 99 . N C 273.993 . AB=0;ABP=0;AC=6;AF=1;AN=6;AO=4;CIGAR=1X12I2X;DP=15;DPB=117;DPRA=0;EPP=11.6962;EPPR=0;GTI=0;LEN=1;MEANALT=2;MQM=16.75;MQMR=0;NS=3;NUMALT=3;ODDS=0;PAIRED=0;PAIREDR=0;PAO=40;PQA=1340;PQR=0;PRO=0;QA=156;QR=0;RO=0;RPL=4;RPP=11.6962;RPPR=0;RPR=0;RUN=1;SAF=0;SAP=11.6962;SAR=4;SRF=0;SRP=0;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 1|1:4:0,0,0,3:0:0:0,0,3:0,0,117:-4.35637,-4.35637,-4.35637,-4.35637,-4.35637,-4.35637,-0.90309,-0.90309,-0.90309,0 1|1:2:0,0,0,1:0:0:0,0,1:0,0,39:-1.60538,-1.60538,-1.60538,-1.60538,-1.60538,-1.60538,-0.30103,-0.30103,-0.30103,0 1|1:9:0,2,6,0:0:0:2,6,0:74,233,0:-21.55,-19.1242,-18.5222,-2.41488,0,-0.6087,-21.55,-19.1242,-2.41488,-21.55 dDocent_Contig_488 27 . T C 1349.37 . AB=0.388889;ABP=16.5217;AC=3;AF=0.5;AN=6;AO=49;CIGAR=1X;DP=126;DPB=126;DPRA=0;EPP=109.412;EPPR=170.214;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=1971;QR=2974;RO=77;RPL=0;RPP=109.412;RPPR=170.214;RPR=49;RUN=1;SAF=49;SAP=109.412;SAR=0;SRF=77;SRP=170.214;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:86:53,33:53:2061:33:1332:-94.2499,0,-159.81 0/1:28:15,13:15:560:13:516:-38.3572,0,-42.3026 0/1:12:9,3:9:353:3:123:-7.85243,0,-28.5195 dDocent_Contig_489 13 . G A 671.139 . AB=0.158273;ABP=284.989;AC=2;AF=0.333333;AN=6;AO=50;CIGAR=1X;DP=371;DPB=371;DPRA=0;EPP=111.584;EPPR=700.053;GTI=0;LEN=1;MEANALT=1;MQM=59.34;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=0.98;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=1955;QR=12786;RO=321;RPL=0;RPP=111.584;RPPR=700.053;RPR=50;RUN=1;SAF=50;SAP=111.584;SAR=0;SRF=321;SRP=700.053;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:191:171,20:171:6860:20:784:-12.1034,0,-559.581 0/0:93:87,6:87:3400:6:233:0,-6.65806,-284.718 0/1:87:63,24:63:2526:24:938:-58.5333,0,-201.289 dDocent_Contig_490 17 . G T 2783.71 . AB=0.344156;ABP=67.9853;AC=3;AF=0.5;AN=6;AO=106;CIGAR=1X;DP=308;DPB=308;DPRA=0;EPP=233.186;EPPR=441.648;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=4176;QR=8007;RO=202;RPL=0;RPP=233.186;RPPR=441.648;RPR=106;RUN=1;SAF=106;SAP=233.186;SAR=0;SRF=202;SRP=441.648;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:128:81,47:81:3170:47:1831:-126.476,0,-246.847 0/1:94:63,31:63:2533:31:1227:-82.4037,0,-199.806 0/1:86:58,28:58:2304:28:1118:-75.0137,0,-181.633 dDocent_Contig_491 19 . T C 1822.93 . AB=0.486111;ABP=3.37221;AC=3;AF=0.5;AN=6;AO=105;CIGAR=2X;DP=216;DPB=216;DPRA=0;EPP=231.015;EPPR=244.044;GTI=0;LEN=1;MEANALT=1;MQM=26.9524;MQMR=59.1441;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=0.954955;PAO=0;PQA=0;PQR=0;PRO=0;QA=4109;QR=4356;RO=111;RPL=0;RPP=231.015;RPPR=244.044;RPR=105;RUN=1;SAF=105;SAP=231.015;SAR=0;SRF=111;SRP=244.044;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|1:116:69,47:69:2704:47:1842:-78.0692,0,-208.593 0|1:34:7,27:7:278:27:1052:-54.833,0,-15.155 0|1:66:35,31:35:1374:31:1215:-54.9138,0,-102.951 dDocent_Contig_494 22 . A G 70.481 . AB=0.375;ABP=4.09604;AC=1;AF=0.166667;AN=6;AO=4;CIGAR=1X;DP=41;DPB=41;DPRA=0.866667;EPP=11.6962;EPPR=83.3548;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=161;QR=1469;RO=37;RPL=0;RPP=11.6962;RPPR=83.3548;RPR=4;RUN=1;SAF=4;SAP=11.6962;SAR=0;SRF=37;SRP=83.3548;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:18:17,1:17:677:1:40:0,-1.42286,-57.2651 0/1:8:5,3:5:204:3:121:-8.87196,0,-16.3358 0/0:15:15,0:15:588:0:0:0,-4.51545,-53.2591 dDocent_Contig_495 196 . G A 86.7742 . AB=0.162791;ABP=45.4803;AC=2;AF=0.333333;AN=6;AO=7;CIGAR=1X;DP=60;DPB=60;DPRA=1.26471;EPP=18.2106;EPPR=118.098;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=271;QR=2018;RO=53;RPL=7;RPP=18.2106;RPPR=118.098;RPR=0;RUN=1;SAF=0;SAP=18.2106;SAR=7;SRF=0;SRP=118.098;SRR=53;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:17:17,0:17:643:0:0:0,-5.11751,-58.2039 0/1:21:17,4:17:658:4:154:-7.91183,0,-53.2356 0/1:22:19,3:19:717:3:117:-4.28772,0,-58.2358 dDocent_Contig_496 12 . T C 123.742 . AB=0.102564;ABP=163.532;AC=1;AF=0.166667;AN=6;AO=26;CIGAR=9M1X2M;DP=464;DPB=455.25;DPRA=0;EPP=59.4686;EPPR=849.885;GTI=0;LEN=1;MEANALT=5.33333;MQM=60;MQMR=60;NS=3;NUMALT=2;ODDS=0;PAIRED=1;PAIREDR=0.997436;PAO=0;PQA=0;PQR=0;PRO=0;QA=1040;QR=14870;RO=390;RPL=0;RPP=59.4686;RPPR=849.885;RPR=26;RUN=1;SAF=26;SAP=59.4686;SAR=0;SRF=390;SRP=849.885;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|0:202:182,10,4:182:6968:10,4:368,162:0,-24.7035,-593.536,-41.4219,-583.187,-612.073 0|1:117:86,12,12:86:3249:12,12:440,486:-14.1981,-4.13271,-266.815,0,-230.35,-262.702 0|0:145:122,9,10:122:4653:9,10:313,392:0,-11.2945,-390.298,-4.48021,-360.775,-383.21 dDocent_Contig_497 71 . G A 2673.81 . AB=0.640244;ABP=31.0276;AC=3;AF=0.5;AN=6;AO=105;CIGAR=1X;DP=164;DPB=164;DPRA=0;EPP=231.015;EPPR=131.127;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=3571;QR=2119;RO=59;RPL=105;RPP=231.015;RPPR=131.127;RPR=0;RUN=1;SAF=105;SAP=231.015;SAR=0;SRF=59;SRP=131.127;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:82:11,71:11:404:71:2434:-194.629,0,-12.0218 0/1:41:27,14:27:950:14:491:-32.1738,0,-73.456 0/1:41:21,20:21:765:20:646:-46.1008,0,-56.8333 dDocent_Contig_498 28 . T A 3236.92 . AB=0.545455;ABP=6.56362;AC=3;AF=0.5;AN=6;AO=108;CIGAR=1X;DP=198;DPB=198;DPRA=0;EPP=237.529;EPPR=198.443;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=0.977778;PAO=0;PQA=0;PQR=0;PRO=0;QA=4312;QR=3614;RO=90;RPL=0;RPP=237.529;RPPR=198.443;RPR=108;RUN=1;SAF=108;SAP=237.529;SAR=0;SRF=90;SRP=198.443;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:111:62,49:62:2474:49:1965:-143.626,0,-189.384 0/1:37:9,28:9:366:28:1118:-89.7681,0,-22.167 0/1:50:19,31:19:774:31:1229:-95.8205,0,-54.9275 dDocent_Contig_499 11 . G C 4467.66 . AB=0.679426;ABP=61.453;AC=3;AF=0.5;AN=6;AO=142;CIGAR=1X;DP=209;DPB=209;DPRA=0;EPP=311.359;EPPR=148.499;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=1.38778e-17;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=5718;QR=2691;RO=67;RPL=0;RPP=311.359;RPPR=148.499;RPR=142;RUN=1;SAF=142;SAP=311.359;SAR=0;SRF=67;SRP=148.499;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:147:48,99:48:1923:99:3992:-314.995,0,-129.015 0/1:19:4,15:4:160:15:609:-49.4273,0,-9.06386 0/1:43:15,28:15:608:28:1117:-87.8666,0,-42.1136 dDocent_Contig_500 138 . A T 43.526 . AB=0.112903;ABP=83.705;AC=1;AF=0.166667;AN=6;AO=7;CIGAR=1X;DP=215;DPB=215;DPRA=0.810458;EPP=18.2106;EPPR=454.677;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=272;QR=8249;RO=208;RPL=0;RPP=18.2106;RPPR=454.677;RPR=7;RUN=1;SAF=0;SAP=18.2106;SAR=7;SRF=0;SRP=454.677;SRR=208;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:143:143,0:143:5681:0:0:0,-43.0473,-511.09 0/0:10:10,0:10:371:0:0:0,-3.0103,-33.7328 0/1:62:55,7:55:2197:7:272:-6.17649,0,-179.231 dDocent_Contig_501 172 . A T 384.449 . AB=0.326531;ABP=15.8176;AC=2;AF=0.333333;AN=6;AO=16;CIGAR=1X;DP=57;DPB=57;DPRA=3.0625;EPP=37.7539;EPPR=92.0407;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=3.46945e-18;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=622;QR=1585;RO=41;RPL=16;RPP=37.7539;RPPR=92.0407;RPR=0;RUN=1;SAF=0;SAP=37.7539;SAR=16;SRF=0;SRP=92.0407;SRR=41;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:36:22,14:22:861:14:540:-38.0995,0,-66.9621 0/1:13:11,2:11:400:2:82:-3.86629,0,-32.414 0/0:8:8,0:8:324:0:0:0,-2.40824,-29.5288 dDocent_Contig_502 50 . T G 502.534 . AB=0.1088;ABP=833.802;AC=3;AF=0.5;AN=6;AO=68;CIGAR=1X;DP=625;DPB=625;DPRA=0;EPP=150.67;EPPR=1212.52;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=59.9102;NS=3;NUMALT=1;ODDS=2.77556e-17;PAIRED=1;PAIREDR=0.994614;PAO=0;PQA=0;PQR=0;PRO=0;QA=2700;QR=22289;RO=557;RPL=68;RPP=150.67;RPPR=1212.52;RPR=0;RUN=1;SAF=68;SAP=150.67;SAR=0;SRF=557;SRP=1212.52;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:390:353,37:353:14113:37:1461:-14.3357,0,-1151.12 0/1:91:79,12:79:3153:12:482:-16.337,0,-256.449 0/1:144:125,19:125:5023:19:757:-25.1037,0,-408.589 dDocent_Contig_503 18 . T C 583.115 . AB=0.428571;ABP=5.18177;AC=2;AF=0.333333;AN=6;AO=22;CIGAR=1X;DP=64;DPB=64;DPRA=0;EPP=50.7827;EPPR=94.2121;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=884;QR=1700;RO=42;RPL=0;RPP=50.7827;RPPR=94.2121;RPR=22;RUN=1;SAF=22;SAP=50.7827;SAR=0;SRF=42;SRP=94.2121;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:35:20,15:20:808:15:598:-43.6187,0,-62.4993 0/0:15:14,1:14:567:1:41:0,-0.420883,-47.2783 0/1:14:8,6:8:325:6:245:-18.2151,0,-25.4046 dDocent_Contig_504 14 . A G 40.8426 . AB=0.230769;ABP=11.1951;AC=2;AF=0.333333;AN=6;AO=3;CIGAR=1X;DP=20;DPB=20;DPRA=0.928571;EPP=9.52472;EPPR=39.9253;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=0;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=118;QR=577;RO=17;RPL=0;RPP=9.52472;RPPR=39.9253;RPR=3;RUN=1;SAF=3;SAP=9.52472;SAR=0;SRF=17;SRP=39.9253;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:7:5,2:5:170:2:80:-5.48436,0,-13.5273 0/1:6:5,1:5:168:1:38:-1.99109,0,-13.6435 0/0:7:7,0:7:239:0:0:0,-2.10721,-21.8436 dDocent_Contig_505 23 . T A 485.903 . AB=0.195652;ABP=114.039;AC=3;AF=0.5;AN=6;AO=27;CIGAR=1X;DP=138;DPB=138;DPRA=0;EPP=61.6401;EPPR=244.044;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=0.990991;PAO=0;PQA=0;PQR=0;PRO=0;QA=1051;QR=4432;RO=111;RPL=0;RPP=61.6401;RPPR=244.044;RPR=27;RUN=1;SAF=27;SAP=61.6401;SAR=0;SRF=111;SRP=244.044;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:87:78,9:78:3112:9:332:-4.02852,0,-253.966 0/1:18:13,5:13:523:5:201:-13.052,0,-41.9975 0/1:33:20,13:20:797:13:518:-37.0313,0,-62.1154 dDocent_Contig_506 23 . T C 5861.09 . AB=0.707865;ABP=103.215;AC=3;AF=0.5;AN=6;AO=189;CIGAR=2X;DP=267;DPB=267;DPRA=0;EPP=413.419;EPPR=163.699;GTI=0;LEN=1;MEANALT=1.66667;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=7453;QR=2741;RO=74;RPL=0;RPP=413.419;RPPR=163.699;RPR=189;RUN=1;SAF=189;SAP=413.419;SAR=0;SRF=74;SRP=163.699;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|1:153:49,103:49:1840:103:4074:-320.797,0,-119.974 0|1:65:15,47:15:510:47:1822:-145.211,0,-27.214 0|1:49:10,39:10:391:39:1557:-125.623,0,-20.7985 dDocent_Contig_507 44 . T A 710.1 . AB=0.209581;ABP=125.354;AC=2;AF=0.333333;AN=6;AO=39;CIGAR=1X;DP=251;DPB=251;DPRA=0;EPP=87.6977;EPPR=463.362;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=1533;QR=8419;RO=212;RPL=0;RPP=87.6977;RPPR=463.362;RPR=39;RUN=1;SAF=39;SAP=87.6977;SAR=0;SRF=212;SRP=463.362;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:136:106,30:106:4229:30:1208:-68.0553,0,-339.617 0/1:31:26,5:26:1011:5:172:-6.47752,0,-81.9529 0/0:84:80,4:80:3179:4:153:0,-11.1462,-272.051 dDocent_Contig_509 7 . T A 149.863 . AB=0.25;ABP=18.2106;AC=1;AF=0.166667;AN=6;AO=7;CIGAR=1X;DP=61;DPB=61;DPRA=1.69697;EPP=18.2106;EPPR=120.27;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=0.925926;PAO=0;PQA=0;PQR=0;PRO=0;QA=273;QR=2048;RO=54;RPL=0;RPP=18.2106;RPPR=120.27;RPR=7;RUN=1;SAF=7;SAP=18.2106;SAR=0;SRF=54;SRP=120.27;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:28:21,7:21:802:7:273:-16.5092,0,-64.0715 0/0:11:11,0:11:418:0:0:0,-3.31133,-37.9716 0/0:22:22,0:22:828:0:0:0,-6.62266,-74.8365 dDocent_Contig_510 7 . T G 2880.34 . AB=0.388158;ABP=36.0395;AC=3;AF=0.5;AN=6;AO=118;CIGAR=1X2M1X2M1X;DP=304;DPB=304;DPRA=0;EPP=259.244;EPPR=369.989;GTI=0;LEN=1;MEANALT=2;MQM=60;MQMR=60;NS=3;NUMALT=2;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=4221;QR=6513;RO=169;RPL=0;RPP=259.244;RPPR=369.989;RPR=118;RUN=1;SAF=118;SAP=259.244;SAR=0;SRF=169;SRP=369.989;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|1:172:93,65,13:93:3581:65,13:2292,516:-158.561,0,-274.433,-144.072,-251.521,-434.188 0|1:60:22,38,0:22:849:38,0:1389,0:-107.23,0,-58.6694,-113.853,-70.1086,-183.583 0|1:72:54,15,3:54:2083:15,3:540,120:-27.7656,0,-166.525,-34.1296,-161.154,-204.3 dDocent_Contig_512 7 . T A 447.074 . AB=0.0978261;ABP=132.26;AC=1;AF=0.166667;AN=6;AO=10;CIGAR=1X2M1X;DP=402;DPB=402;DPRA=0;EPP=24.725;EPPR=732.625;GTI=0;LEN=1;MEANALT=3;MQM=58;MQMR=60;NS=3;NUMALT=3;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=383;QR=12925;RO=336;RPL=0;RPP=24.725;RPPR=732.625;RPR=10;RUN=1;SAF=10;SAP=24.725;SAR=0;SRF=336;SRP=732.625;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|0:229:192,0,5,30:192:7405:0,5,30:0,194,1198:-40.9114,-98.7091,-706.806,-82.7694,-690.866,-689.361,0,-608.136,-592.196,-599.105 0|0:81:74,1,0,5:74:2829:1,0,5:37,0,202:0,-19.2482,-251.107,-22.2762,-251.408,-254.433,-5.50589,-234.753,-237.779,-236.273 0|1:92:70,9,5,8:70:2691:9,5,8:346,184,325:-7.31502,0,-218.203,-13.3489,-205.87,-232.754,-1.57144,-194.105,-207.452,-220.087 dDocent_Contig_513 8 . T A 5135.49 . AB=0.0648148;ABP=358.328;AC=0;AF=0;AN=6;AO=14;CIGAR=1X1M1X;DP=291;DPB=291;DPRA=0;EPP=33.4109;EPPR=239.701;GTI=0;LEN=1;MEANALT=2;MQM=60;MQMR=60;NS=3;NUMALT=2;ODDS=2.77556e-17;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=543;QR=4158;RO=109;RPL=0;RPP=33.4109;RPPR=239.701;RPR=14;RUN=1;SAF=14;SAP=33.4109;SAR=0;SRF=109;SRP=239.701;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|0:125:32,12,81:32:1234:12,81:467,3234:-256.699,-227.952,-325.671,0,-62.9509,-76.9496 0|0:75:43,0,32:43:1616:0,32:0,1276:-92.5332,-105.477,-237.847,0,-132.758,-123.125 0|0:91:34,2,55:34:1308:2,55:76,2187:-169.84,-173.843,-280.623,0,-101.159,-90.8351 dDocent_Contig_514 30 . G T 7046.46 . AB=0.815498;ABP=237.313;AC=3;AF=0.5;AN=6;AO=221;CIGAR=1X;DP=271;DPB=271;DPRA=0;EPP=482.906;EPPR=111.584;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=1.38778e-17;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=8794;QR=1971;RO=50;RPL=0;RPP=482.906;RPPR=111.584;RPR=221;RUN=1;SAF=221;SAP=482.906;SAR=0;SRF=50;SRP=111.584;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:169:32,137:32:1252:137:5452:-439.644,0,-62.076 0/1:31:4,27:4:156:27:1079:-88.0656,0,-5.08451 0/1:71:14,57:14:563:57:2263:-182.459,0,-29.6401 dDocent_Contig_515 34 . G A 841.179 . AB=0.245161;ABP=90.4436;AC=3;AF=0.5;AN=6;AO=38;CIGAR=1X;DP=155;DPB=155;DPRA=0;EPP=85.5263;EPPR=257.073;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=1503;QR=4570;RO=117;RPL=0;RPP=85.5263;RPPR=257.073;RPR=38;RUN=1;SAF=38;SAP=85.5263;SAR=0;SRF=117;SRP=257.073;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:92:63,29:63:2464:29:1154:-76.4489,0,-194.226 0/1:30:26,4:26:1017:4:159:-5.66143,0,-82.8007 0/1:33:28,5:28:1089:5:190:-7.53042,0,-88.3628 dDocent_Contig_516 10 . T G 5601.23 . AB=0.892308;ABP=263.687;AC=3;AF=0.5;AN=6;AO=174;CIGAR=1X;DP=195;DPB=195;DPRA=0;EPP=380.846;EPPR=48.6112;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=6931;QR=850;RO=21;RPL=0;RPP=380.846;RPPR=48.6112;RPR=174;RUN=1;SAF=174;SAP=380.846;SAR=0;SRF=21;SRP=48.6112;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:116:10,106:10:408:106:4192:-342.32,0,-2.1611 0/1:24:3,21:3:123:21:841:-68.7765,0,-4.24007 0/1:55:8,47:8:319:47:1898:-154.459,0,-12.5193 dDocent_Contig_517 16 . C G 1208.93 . AB=0.271739;ABP=86.2815;AC=3;AF=0.5;AN=6;AO=50;CIGAR=1X;DP=184;DPB=184;DPRA=0;EPP=111.584;EPPR=293.988;GTI=0;LEN=1;MEANALT=1;MQM=55.98;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=0.98;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=2016;QR=5351;RO=134;RPL=0;RPP=111.584;RPPR=293.988;RPR=50;RUN=1;SAF=50;SAP=111.584;SAR=0;SRF=134;SRP=293.988;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:114:88,26:88:3496:26:1045:-59.6985,0,-280.353 0/1:38:23,15:23:926:15:607:-43.3742,0,-72.2055 0/1:32:23,9:23:929:9:364:-23.3433,0,-74.2805 dDocent_Contig_518 49 . C T 298.311 . AB=0.521739;ABP=3.10471;AC=1;AF=0.166667;AN=6;AO=14;CIGAR=1X;DP=61;DPB=61;DPRA=4.58333;EPP=25.3454;EPPR=105.07;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=0;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=500;QR=1835;RO=47;RPL=6;RPP=3.63072;RPPR=105.07;RPR=8;RUN=1;SAF=7;SAP=3.0103;SAR=7;SRF=47;SRP=105.07;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:32:30,2:30:1201:2:75:0,-2.51337,-101.245 0/1:23:11,12:11:415:12:425:-31.655,0,-30.7752 0/0:6:6,0:6:219:0:0:0,-1.80618,-20.0598 dDocent_Contig_519 23 . T C 82.5577 . AB=0.155556;ABP=49.3833;AC=2;AF=0.333333;AN=6;AO=7;CIGAR=1X;DP=59;DPB=59;DPRA=1.60714;EPP=18.2106;EPPR=115.927;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=273;QR=2052;RO=52;RPL=0;RPP=18.2106;RPPR=115.927;RPR=7;RUN=1;SAF=7;SAP=18.2106;SAR=0;SRF=52;SRP=115.927;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:34:30,4:30:1178:4:158:-4.36525,0,-96.0674 0/1:11:8,3:8:323:3:115:-7.41277,0,-26.1273 0/0:14:14,0:14:551:0:0:0,-4.21442,-49.9315 dDocent_Contig_522 38 . G A 1342.64 . AB=0.121723;ABP=1330.42;AC=2;AF=0.333333;AN=6;AO=147;CIGAR=1X;DP=1313;DPB=1313;DPRA=0;EPP=322.217;EPPR=2534.95;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=0.997427;PAO=0;PQA=0;PQR=0;PRO=0;QA=5756;QR=46326;RO=1166;RPL=0;RPP=322.217;RPPR=2534.95;RPR=147;RUN=1;SAF=147;SAP=322.217;SAR=0;SRF=1166;SRP=2534.95;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:669:590,79:590:23409:79:3133:-80.6582,0,-1903.41 0/0:245:228,17:228:9034:17:656:0,-14.3833,-753.16 0/1:399:348,51:348:13883:51:1967:-57.1289,0,-1128.28 dDocent_Contig_523 22 . T C 33789 . AB=0.882591;ABP=1259.16;AC=4;AF=0.666667;AN=6;AO=1034;CIGAR=1X;DP=1161;DPB=1161;DPRA=0;EPP=2248.31;EPPR=257.073;GTI=0;LEN=1;MEANALT=1.66667;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=0.972921;PAIREDR=0.982906;PAO=0;PQA=0;PQR=0;PRO=0;QA=41348;QR=4721;RO=117;RPL=0;RPP=2248.31;RPPR=257.073;RPR=1034;RUN=1;SAF=1034;SAP=2248.31;SAR=0;SRF=117;SRP=257.073;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:634:58,570:58:2331:570:22817:-1862.03,0,-20.4903 1/1:173:11,162:11:446:162:6460:-540.637,-11.5831,0 0/1:354:48,302:48:1944:302:12071:-979.754,0,-69.3827 dDocent_Contig_524 20 . T C 5987.45 . AB=0.702811;ABP=91.9709;AC=5;AF=0.833333;AN=6;AO=175;CIGAR=1X2M;DP=249;DPB=249;DPRA=0;EPP=383.018;EPPR=74.6689;GTI=0;LEN=1;MEANALT=2.33333;MQM=60;MQMR=60;NS=3;NUMALT=2;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=6950;QR=1265;RO=33;RPL=0;RPP=383.018;RPPR=74.6689;RPR=175;RUN=1;SAF=175;SAP=383.018;SAR=0;SRF=33;SRP=74.6689;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 1|1:160:22,29,109:22:852:29,109:1156,4335:-375.496,-286.921,-348.178,-25.2202,0,-62.3914 1|1:25:0,5,20:0:0:5,20:200,775:-80.5232,-64.0457,-62.5405,-16.8746,0,-10.854 0|1:64:11,6,46:11:413:6,46:242,1840:-148.248,-131.611,-163.629,0,-13.8578,-19.9684 dDocent_Contig_525 10 . C G 137.88 . AB=0.191489;ABP=41.8658;AC=1;AF=0.166667;AN=6;AO=38;CIGAR=1X;DP=420;DPB=420;DPRA=0;EPP=85.5263;EPPR=832.513;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=2.77556e-17;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=1473;QR=15252;RO=382;RPL=0;RPP=85.5263;RPPR=832.513;RPR=38;RUN=1;SAF=38;SAP=85.5263;SAR=0;SRF=382;SRP=832.513;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:248:228,20:228:9108:20:786:0,-3.60104,-748.105 0/1:47:38,9:38:1491:9:327:-15.6119,0,-120.281 0/0:125:116,9:116:4653:9:360:0,-4.86656,-385.915 dDocent_Contig_527 14 . G A 100.986 . AB=0.176471;ABP=33.9218;AC=1;AF=0.166667;AN=6;AO=6;CIGAR=1X;DP=153;DPB=153;DPRA=0.571429;EPP=16.0391;EPPR=322.217;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=1.73472e-18;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=242;QR=5910;RO=147;RPL=0;RPP=16.0391;RPPR=322.217;RPR=6;RUN=1;SAF=6;SAP=16.0391;SAR=0;SRF=147;SRP=322.217;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:91:91,0:91:3656:0:0:0,-27.3937,-329.054 0/0:28:28,0:28:1123:0:0:0,-8.42884,-101.353 0/1:34:28,6:28:1131:6:242:-11.9225,0,-91.8369 dDocent_Contig_528 11 . T C 627.219 . AB=0.403509;ABP=7.61992;AC=3;AF=0.5;AN=6;AO=23;CIGAR=1X1M;DP=57;DPB=57;DPRA=0;EPP=52.9542;EPPR=72.4974;GTI=0;LEN=1;MEANALT=1.33333;MQM=60;MQMR=60;NS=3;NUMALT=2;ODDS=0;PAIRED=0.73913;PAIREDR=0.84375;PAO=0;PQA=0;PQR=0;PRO=0;QA=934;QR=1270;RO=32;RPL=0;RPP=52.9542;RPPR=72.4974;RPR=23;RUN=1;SAF=23;SAP=52.9542;SAR=0;SRF=32;SRP=72.4974;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|1:31:13,2,16:13:512:2,16:74,648:-49.5492,-47.4142,-88.9257,0,-36.09,-37.3227 0|1:15:11,0,4:11:434:0,4:0,164:-10.6344,-13.9458,-49.644,0,-36.1036,-34.8995 0|1:11:8,0,3:8:324:0,3:0,122:-8.06116,-10.4694,-37.1843,0,-27.1206,-26.2175 dDocent_Contig_529 34 . C G 89.043 . AB=0.193548;ABP=28.2974;AC=2;AF=0.333333;AN=6;AO=6;CIGAR=1X;DP=108;DPB=108;DPRA=0.201299;EPP=16.0391;EPPR=224.5;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=233;QR=3905;RO=102;RPL=0;RPP=16.0391;RPPR=224.5;RPR=6;RUN=1;SAF=6;SAP=16.0391;SAR=0;SRF=102;SRP=224.5;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:77:77,0:77:2952:0:0:0,-23.1793,-265.808 0/1:16:14,2:14:532:2:79:-2.68076,0,-43.3949 0/1:15:11,4:11:421:4:154:-9.71722,0,-33.7191 dDocent_Contig_530 7 . T C 70.1109 . AB=0.194444;ABP=32.2045;AC=2;AF=0.333333;AN=6;AO=7;CIGAR=1X;DP=54;DPB=54;DPRA=1;EPP=18.2106;EPPR=105.07;GTI=0;LEN=1;MEANALT=1;MQM=34.2857;MQMR=59.4894;NS=3;NUMALT=1;ODDS=0;PAIRED=0;PAIREDR=0.978723;PAO=0;PQA=0;PQR=0;PRO=0;QA=273;QR=1794;RO=47;RPL=0;RPP=18.2106;RPPR=105.07;RPR=7;RUN=1;SAF=7;SAP=18.2106;SAR=0;SRF=47;SRP=105.07;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:18:14,4:14:539:4:156:-6.8904,0,-43.0081 0/1:18:15,3:15:569:3:117:-3.64026,0,-46.1314 0/0:18:18,0:18:686:0:0:0,-5.41854,-62.0716 dDocent_Contig_532 8 . T C 235.117 . AB=0.030303;ABP=319.19;AC=1;AF=0.166667;AN=6;AO=5;CIGAR=3X1M;DP=223;DPB=223;DPRA=0;EPP=13.8677;EPPR=383.018;GTI=0;LEN=1;MEANALT=3.5;MQM=60;MQMR=60;NS=3;NUMALT=4;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=195;QR=6853;RO=175;RPL=0;RPP=13.8677;RPPR=383.018;RPR=5;RUN=1;SAF=5;SAP=13.8677;SAR=0;SRF=175;SRP=383.018;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|0:139:108,16,2,9,4:108:4226:16,2,9,4:612,78,348,161:-17.6991,0,-342.658,-43.7984,-341.063,-390.674,-21.6256,-318.89,-362.692,-366.394,-36.9393,-334.205,-378.007,-355.835,-383.215 0|1:26:21,0,3,0,1:21:818:0,3,0,1:0,117,0,41:-3.28412,-9.60575,-76.8274,0,-67.2099,-66.3068,-9.60575,-76.8274,-67.2099,-76.8274,-6.2187,-73.4426,-63.825,-73.4426,-73.1416 0|0:58:46,1,0,7,4:46:1809:1,0,7,4:40,0,267,162:-8.04384,-18.5953,-167.103,-21.8912,-167.404,-170.699,0,-145.502,-148.797,-146.69,-8.52607,-154.045,-157.34,-135.438,-156.136 dDocent_Contig_534 95 . C T 56.4988 . AB=0.176471;ABP=33.9218;AC=2;AF=0.333333;AN=6;AO=6;CIGAR=1X;DP=61;DPB=61;DPRA=0.62963;EPP=16.0391;EPPR=122.441;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=3.46945e-18;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=208;QR=1851;RO=55;RPL=6;RPP=16.0391;RPPR=122.441;RPR=0;RUN=1;SAF=6;SAP=16.0391;SAR=0;SRF=55;SRP=122.441;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:15:12,3:12:416:3:104:-5.18764,0,-33.2573 0/0:27:27,0:27:919:0:0:0,-8.12781,-83.0217 0/1:19:16,3:16:516:3:104:-3.98352,0,-41.0276 dDocent_Contig_535 14 . G A 38.9829 . AB=0.111111;ABP=85.7675;AC=1;AF=0.166667;AN=6;AO=10;CIGAR=1X;DP=131;DPB=131;DPRA=2.12;EPP=24.725;EPPR=265.758;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=388;QR=4807;RO=121;RPL=0;RPP=24.725;RPPR=265.758;RPR=10;RUN=1;SAF=10;SAP=24.725;SAR=0;SRF=121;SRP=265.758;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:63:56,7:56:2227:7:267:-5.42108,0,-181.626 0/0:25:25,0:25:972:0:0:0,-7.52575,-87.7697 0/0:43:40,3:40:1608:3:121:0,-1.66409,-133.666 dDocent_Contig_536 39 . T A 5158.26 . AB=0.410835;ABP=33.6021;AC=3;AF=0.5;AN=6;AO=182;CIGAR=1X3M;DP=443;DPB=443;DPRA=0;EPP=398.218;EPPR=487.249;GTI=0;LEN=1;MEANALT=3.66667;MQM=60;MQMR=60;NS=3;NUMALT=2;ODDS=0;PAIRED=1;PAIREDR=0.896861;PAO=0;PQA=0;PQR=0;PRO=0;QA=7155;QR=8748;RO=223;RPL=0;RPP=398.218;RPPR=487.249;RPR=182;RUN=1;SAF=182;SAP=398.218;SAR=0;SRF=223;SRP=487.249;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|1:233:112,14,104:112:4387:14,104:542,4079:-301.697,-290.896,-647.405,0,-316.209,-329.419 0|1:72:31,5,35:31:1211:5,35:199,1373:-103.571,-96.516,-194.564,0,-83.1608,-89.0119 0|1:138:80,9,43:80:3150:9,43:356,1703:-116.081,-110.865,-367.278,0,-229.823,-246.177 dDocent_Contig_537 167 . G T 50.2499 . AB=0.107692;ABP=89.9026;AC=1;AF=0.166667;AN=6;AO=7;CIGAR=1X;DP=103;DPB=103;DPRA=3.42105;EPP=18.2106;EPPR=211.472;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=286;QR=3828;RO=96;RPL=7;RPP=18.2106;RPPR=211.472;RPR=0;RUN=1;SAF=0;SAP=18.2106;SAR=7;SRF=0;SRP=211.472;SRR=96;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:65:58,7:58:2320:7:286:-6.54787,0,-189.389 0/0:14:14,0:14:556:0:0:0,-4.21442,-50.3838 0/0:24:24,0:24:952:0:0:0,-7.22472,-85.9736 dDocent_Contig_538 1 . N C 206.768 . AB=0;ABP=0;AC=4;AF=1;AN=4;AO=10;CIGAR=1X;DP=10;DPB=10;DPRA=0;EPP=10.8276;EPPR=0;GTI=0;LEN=1;MEANALT=1;MQM=22.5;MQMR=0;NS=2;NUMALT=1;ODDS=0;PAIRED=0.4;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=383;QR=0;RO=0;RPL=0;RPP=24.725;RPPR=0;RPR=10;RUN=1;SAF=8;SAP=10.8276;SAR=2;SRF=0;SRP=0;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 1/1:6:0,6:0:0:6:230:-10.9099,-1.80618,0 1/1:4:0,4:0:0:4:153:-9.46565,-1.20412,0 ./.:.:.:.:.:.:.:. dDocent_Contig_539 23 . G T 2336.94 . AB=0.435233;ABP=10.0423;AC=3;AF=0.5;AN=6;AO=84;CIGAR=1X;DP=193;DPB=193;DPRA=0;EPP=185.414;EPPR=239.701;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=0.130952;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=3294;QR=4257;RO=109;RPL=0;RPP=185.414;RPPR=239.701;RPR=84;RUN=1;SAF=84;SAP=185.414;SAR=0;SRF=109;SRP=239.701;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:123:72,51:72:2838:51:2008:-143.894,0,-218.51 0/1:38:15,23:15:597:23:894:-69.324,0,-42.6296 0/1:32:22,10:22:822:10:392:-25.9986,0,-64.642 dDocent_Contig_540 107 . N A 41.8029 . AB=0;ABP=0;AC=2;AF=1;AN=2;AO=2;CIGAR=1X;DP=2;DPB=2;DPRA=0;EPP=7.35324;EPPR=0;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=0;NS=1;NUMALT=1;ODDS=5.99146;PAIRED=1;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=44;QR=0;RO=0;RPL=0;RPP=7.35324;RPPR=0;RPR=2;RUN=1;SAF=0;SAP=7.35324;SAR=2;SRF=0;SRP=0;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL ./.:.:.:.:.:.:.:. ./.:.:.:.:.:.:.:. 1/1:2:0,2:0:0:2:44:-4.17917,-0.60206,0 dDocent_Contig_541 108 . G T 177.447 . AB=0.119898;ABP=494.937;AC=3;AF=0.5;AN=6;AO=47;CIGAR=1X;DP=392;DPB=392;DPRA=0;EPP=105.07;EPPR=752.168;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=1559;QR=11536;RO=345;RPL=0;RPP=105.07;RPPR=752.168;RPR=47;RUN=1;SAF=0;SAP=105.07;SAR=47;SRF=0;SRP=752.168;SRR=345;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:253:225,28:225:7524:28:945:-9.19858,0,-601.108 0/1:56:46,10:46:1538:10:309:-11.2521,0,-121.852 0/1:83:74,9:74:2474:9:305:-2.7943,0,-197.93 dDocent_Contig_542 31 . T C 707.23 . AB=0.209581;ABP=125.354;AC=3;AF=0.5;AN=6;AO=35;CIGAR=2X;DP=167;DPB=167;DPRA=0;EPP=79.0118;EPPR=289.645;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=1394;QR=5192;RO=132;RPL=0;RPP=79.0118;RPPR=289.645;RPR=35;RUN=1;SAF=35;SAP=79.0118;SAR=0;SRF=132;SRP=289.645;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|1:107:86,21:86:3363:21:838:-43.5245,0,-270.533 0|1:25:15,10:15:606:10:396:-28.4728,0,-47.353 0|1:35:31,4:31:1223:4:160:-4.24775,0,-99.809 dDocent_Contig_543 22 . C T 450.909 . AB=0.316667;ABP=20.5268;AC=2;AF=0.333333;AN=6;AO=19;CIGAR=1X;DP=65;DPB=65;DPRA=6;EPP=44.2683;EPPR=102.898;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=733;QR=1838;RO=46;RPL=0;RPP=44.2683;RPPR=102.898;RPR=19;RUN=1;SAF=19;SAP=44.2683;SAR=0;SRF=46;SRP=102.898;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:33:25,8:25:1008:8:298:-17.2353,0,-81.0779 0/0:5:5,0:5:196:0:0:0,-1.50515,-18.0122 0/1:27:16,11:16:634:11:435:-31.3785,0,-49.2654 dDocent_Contig_544 11 . A G 964.183 . AB=0.150943;ABP=59.0998;AC=0;AF=0;AN=6;AO=8;CIGAR=2X3M1X;DP=64;DPB=64;DPRA=0;EPP=20.3821;EPPR=44.2683;GTI=0;LEN=1;MEANALT=2.5;MQM=55.625;MQMR=60;NS=3;NUMALT=4;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=313;QR=758;RO=19;RPL=0;RPP=20.3821;RPPR=44.2683;RPR=8;RUN=1;SAF=8;SAP=20.3821;SAR=0;SRF=19;SRP=44.2683;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|0:28:11,0,3,8,6:11:442:0,3,8,6:0,122,318,232:-22.871,-26.1823,-62.6081,-16.1166,-52.5438,-51.6407,0,-36.4281,-26.3633,-34.0198,-7.17798,-43.602,-33.5379,-17.4238,-41.7958 0|0:11:1,3,0,7,0:1:39:3,0,7,0:121,0,276,0:-29.182,-19.5061,-21.8083,-29.483,-22.7114,-32.6882,-6.78157,0,-9.98415,-7.87694,-29.483,-22.7114,-32.6882,-9.98415,-32.6882 0|0:25:7,0,0,16,2:7:277:0,0,16,2:0,0,632,81:-49.8882,-51.9955,-74.7932,-51.9955,-74.7932,-74.7932,0,-22.7911,-22.7911,-17.9746,-45.3256,-68.1236,-68.1236,-16.1204,-67.5216 dDocent_Contig_545 17 . A G 1148.21 . AB=0.411765;ABP=9.90792;AC=3;AF=0.5;AN=6;AO=42;CIGAR=1X;DP=102;DPB=102;DPRA=0;EPP=94.2121;EPPR=133.299;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=6.93889e-18;PAIRED=0.952381;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=1667;QR=2289;RO=60;RPL=0;RPP=94.2121;RPPR=133.299;RPR=42;RUN=1;SAF=42;SAP=94.2121;SAR=0;SRF=60;SRP=133.299;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:69:38,31:38:1480:31:1230:-90.2006,0,-112.677 0/1:14:10,4:10:375:4:155:-10.11,0,-29.8752 0/1:19:12,7:12:434:7:282:-20.0334,0,-33.6598 dDocent_Contig_546 11 . A C 85.4704 . AB=0.102273;ABP=244.833;AC=1;AF=0.166667;AN=6;AO=18;CIGAR=1X;DP=254;DPB=254;DPRA=4.51282;EPP=42.0968;EPPR=511.135;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=697;QR=9184;RO=234;RPL=0;RPP=42.0968;RPPR=511.135;RPR=18;RUN=1;SAF=18;SAP=42.0968;SAR=0;SRF=234;SRP=511.135;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:176:158,18:158:6192:18:697:-10.0699,0,-504.103 0/0:19:19,0:19:748:0:0:0,-5.71957,-67.6457 0/0:59:57,0:57:2244:0:0:0,-17.1587,-201.727 dDocent_Contig_547 107 . N A 680.95 . AB=0;ABP=0;AC=6;AF=1;AN=6;AO=31;CIGAR=1X;DP=31;DPB=31;DPRA=0;EPP=70.3259;EPPR=0;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=0;NS=3;NUMALT=1;ODDS=0;PAIRED=0.967742;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=743;QR=0;RO=0;RPL=0;RPP=70.3259;RPPR=0;RPR=31;RUN=1;SAF=0;SAP=70.3259;SAR=31;SRF=0;SRP=0;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 1/1:20:0,20:0:0:20:476:-43.0681,-6.0206,0 1/1:8:0,8:0:0:8:176:-16.0581,-2.40824,0 1/1:3:0,3:0:0:3:91:-8.49142,-0.90309,0 dDocent_Contig_548 125 . T A 1797.14 . AB=0.753623;ABP=41.5618;AC=4;AF=0.666667;AN=6;AO=60;CIGAR=1X;DP=77;DPB=77;DPRA=0;EPP=133.299;EPPR=39.9253;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=2256;QR=631;RO=17;RPL=0;RPP=133.299;RPPR=39.9253;RPR=60;RUN=1;SAF=0;SAP=133.299;SAR=60;SRF=0;SRP=39.9253;SRR=17;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:52:10,42:10:361:42:1583:-127.08,0,-17.1739 1/1:8:0,8:0:0:8:297:-27.0823,-2.40824,0 0/1:17:7,10:7:270:10:376:-29.074,0,-19.5478 dDocent_Contig_549 19 . C A 700.983 . AB=0.308511;ABP=32.9489;AC=2;AF=0.333333;AN=6;AO=33;CIGAR=1X;DP=208;DPB=208;DPRA=0;EPP=74.6689;EPPR=332.689;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=6.93889e-18;PAIRED=1;PAIREDR=0.897143;PAO=0;PQA=0;PQR=0;PRO=0;QA=1288;QR=6902;RO=175;RPL=0;RPP=74.6689;RPPR=383.018;RPR=33;RUN=1;SAF=33;SAP=74.6689;SAR=0;SRF=169;SRP=332.689;SRR=6;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:114:110,4:110:4404:4:163:0,-19.259,-381.237 0/1:48:37,11:37:1405:11:418:-23.5114,0,-112.261 0/1:46:28,18:28:1093:18:707:-50.1098,0,-84.8126 dDocent_Contig_551 22 . T A 599.361 . AB=0.308642;ABP=28.7731;AC=3;AF=0.5;AN=6;AO=25;CIGAR=1X;DP=81;DPB=81;DPRA=0;EPP=57.2971;EPPR=124.613;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=986;QR=2179;RO=56;RPL=0;RPP=57.2971;RPPR=124.613;RPR=25;RUN=1;SAF=25;SAP=57.2971;SAR=0;SRF=56;SRP=124.613;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:45:27,18:27:1056:18:703:-50.0483,0,-81.7891 0/1:19:16,3:16:623:3:122:-5.65292,0,-50.6887 0/1:17:13,4:13:500:4:161:-9.75776,0,-40.2287 dDocent_Contig_552 11 . T A 1668.87 . AB=0.276119;ABP=119.686;AC=2;AF=0.333333;AN=6;AO=79;CIGAR=1X3M2I1X;DP=348;DPB=379.6;DPRA=0;EPP=174.557;EPPR=576.279;GTI=0;LEN=1;MEANALT=2;MQM=60;MQMR=60;NS=3;NUMALT=2;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=2969;QR=10528;RO=264;RPL=0;RPP=174.557;RPPR=576.279;RPR=79;RUN=1;SAF=79;SAP=174.557;SAR=0;SRF=264;SRP=576.279;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|1:241:170,69,2:170:6777:69,2:2596,82:-161.502,0,-537.302,-205.908,-551.305,-763.407 0|1:27:20,5,2:20:785:5,2:183,81:-8.90726,0,-63.0437,-8.23763,-57.8686,-72.2168 0|0:80:74,5,1:74:2966:5,1:190,41:0,-6.71843,-249.565,-18.8872,-247.686,-262.966 dDocent_Contig_553 24 . C T 5366.39 . AB=0.319149;ABP=69.7715;AC=3;AF=0.5;AN=6;AO=75;CIGAR=1X2M1X;DP=235;DPB=235;DPRA=0;EPP=165.871;EPPR=72.4974;GTI=0;LEN=1;MEANALT=2.33333;MQM=60;MQMR=60;NS=3;NUMALT=2;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=2958;QR=1282;RO=32;RPL=0;RPP=165.871;RPPR=72.4974;RPR=75;RUN=1;SAF=75;SAP=165.871;SAR=0;SRF=32;SRP=72.4974;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 1|0:139:21,44,74:21:842:44,74:1742,2916:-307.546,-170.494,-226.621,-73.997,0,-121.093 1|0:22:3,9,10:3:121:9,10:358,399:-51.4547,-22.8812,-30.1472,-19.4974,0,-26.4627 1|0:74:8,22,43:8:319:22,43:858,1716:-183.162,-115.052,-134.7,-44.2423,0,-57.5709 dDocent_Contig_555 30 . C T 72.0634 . AB=0.139535;ABP=51.5402;AC=1;AF=0.166667;AN=6;AO=10;CIGAR=1X;DP=194;DPB=194;DPRA=0;EPP=24.725;EPPR=402.561;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=6.93889e-18;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=400;QR=7416;RO=184;RPL=0;RPP=24.725;RPPR=402.561;RPR=10;RUN=1;SAF=10;SAP=24.725;SAR=0;SRF=184;SRP=402.561;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:111:108,3:108:4365:3:119:0,-22.3191,-381.681 0/1:43:37,6:37:1488:6:240:-9.03025,0,-121.217 0/0:40:39,1:39:1563:1:41:0,-7.94663,-136.813 dDocent_Contig_556 17 . G A 196.683 . AB=0.257143;ABP=20.9405;AC=2;AF=0.333333;AN=6;AO=13;CIGAR=1X3M1X;DP=89;DPB=89;DPRA=0;EPP=31.2394;EPPR=165.871;GTI=0;LEN=1;MEANALT=1.33333;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=513;QR=2967;RO=75;RPL=0;RPP=31.2394;RPPR=165.871;RPR=13;RUN=1;SAF=13;SAP=31.2394;SAR=0;SRF=75;SRP=165.871;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|0:54:50,4:50:1979:4:155:0,-1.93383,-163.999 0|1:13:6,7:6:240:7:278:-21.4773,0,-18.0626 0|1:22:19,2:19:748:2:80:-1.01697,0,-61.1327 dDocent_Contig_557 16 . C A 481.058 . AB=0.261905;ABP=23.691;AC=1;AF=0.166667;AN=6;AO=11;CIGAR=2M1X1M1X3M1I11M;DP=80;DPB=77.8421;DPRA=0;EPP=26.8965;EPPR=124.613;GTI=0;LEN=1;MEANALT=2;MQM=60;MQMR=60;NS=3;NUMALT=2;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=426;QR=2207;RO=56;RPL=0;RPP=26.8965;RPPR=124.613;RPR=11;RUN=1;SAF=11;SAP=26.8965;SAR=0;SRF=56;SRP=124.613;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|1:42:29,11,2:29:1147:11,2:426,77:-26.2663,0,-91.094,-28.6744,-88.0839,-122.474 0|0:15:10,0,5:10:397:0,5:0,186:-12.5833,-15.5936,-48.293,0,-33.0794,-31.5743 0|0:23:17,0,6:17:663:0,6:0,237:-14.7791,-19.8966,-74.3853,0,-54.882,-53.0758 dDocent_Contig_559 40 . T C 107.115 . AB=0.138462;ABP=76.807;AC=1;AF=0.166667;AN=6;AO=22;CIGAR=1X;DP=375;DPB=375;DPRA=0;EPP=50.7827;EPPR=765.197;GTI=0;LEN=1;MEANALT=1.66667;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=1.38778e-17;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=876;QR=12001;RO=351;RPL=0;RPP=50.7827;RPPR=765.197;RPR=22;RUN=1;SAF=22;SAP=50.7827;SAR=0;SRF=351;SRP=765.197;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:214:203,11:203:6923:11:446:0,-23.9242,-582.635 0/1:65:54,9:54:1867:9:349:-12.5354,0,-149.092 0/0:96:94,2:94:3211:2:81:0,-21.2131,-281.516 dDocent_Contig_560 85 . T C 31.1182 . AB=0.157895;ABP=22.325;AC=1;AF=0.166667;AN=6;AO=4;CIGAR=1X;DP=57;DPB=57;DPRA=1.08333;EPP=11.6962;EPPR=118.098;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=1.73472e-18;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=148;QR=1900;RO=53;RPL=4;RPP=11.6962;RPPR=118.098;RPR=0;RUN=1;SAF=4;SAP=11.6962;SAR=0;SRF=53;SRP=118.098;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:19:16,3:16:581:3:111:-4.63435,0,-46.9058 0/0:20:19,1:19:689:1:37:0,-2.32277,-58.6416 0/0:18:18,0:18:630:0:0:0,-5.41854,-57.0257 dDocent_Contig_561 32 . T C 5018.87 . AB=0.689362;ABP=76.2028;AC=3;AF=0.5;AN=6;AO=162;CIGAR=1X;DP=235;DPB=235;DPRA=0;EPP=354.789;EPPR=161.528;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=6418;QR=2917;RO=73;RPL=0;RPP=354.789;RPPR=161.528;RPR=162;RUN=1;SAF=162;SAP=354.789;SAR=0;SRF=73;SRP=161.528;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:133:47,86:47:1887:86:3408:-266.735,0,-129.991 0/1:38:12,26:12:471:26:1021:-80.7357,0,-31.2971 0/1:64:14,50:14:559:50:1989:-159.939,0,-31.3859 dDocent_Contig_562 25 . A C 1401.74 . AB=0.424528;ABP=8.25461;AC=5;AF=0.833333;AN=6;AO=45;CIGAR=2X1M1X2M;DP=106;DPB=106;DPRA=0;EPP=100.727;EPPR=52.9542;GTI=0;LEN=1;MEANALT=3.66667;MQM=60;MQMR=60;NS=3;NUMALT=5;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=1776;QR=908;RO=23;RPL=0;RPP=100.727;RPPR=52.9542;RPR=45;RUN=1;SAF=45;SAP=100.727;SAR=0;SRF=23;SRP=52.9542;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 1|1:40:10,2,0,11,0,17:10:399:2,0,11,0,17:80,0,439,0,679:-56.2103,-52.6305,-84.8886,-59.2206,-85.4906,-92.0806,-23.0651,-49.3351,-55.9251,-52.6138,-59.2206,-85.4906,-92.0806,-55.9251,-92.0806,-3.29552,-29.5655,-36.1556,0,-36.1556,-31.0381 1|1:28:4,0,2,5,4,13:4:160:0,2,5,4,13:0,80,199,163,507:-43.6661,-44.8702,-58.0512,-38.2798,-51.4609,-50.8588,-28.4837,-41.6649,-35.0745,-40.1598,-31.4205,-44.602,-38.0115,-28.2151,-43.3978,-3.20434,-16.3842,-9.79443,0,-2.93464,-12.4708 0|1:38:9,7,0,3,4,15:9:349:7,0,3,4,15:269,0,120,161,590:-45.82,-26.4524,-53.0112,-48.5292,-55.1184,-77.1964,-38.6432,-45.2325,-67.3104,-66.4073,-35.2584,-41.8478,-63.9258,-54.0396,-62.7217,0,-6.58959,-28.6664,-18.7798,-15.3946,-24.1509 dDocent_Contig_563 132 . T C 45.2595 . AB=0.235294;ABP=13.3567;AC=1;AF=0.166667;AN=6;AO=5;CIGAR=1X1M2X3M1X;DP=125;DPB=125;DPRA=0.226744;EPP=13.8677;EPPR=259.244;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=157;QR=3897;RO=118;RPL=0;RPP=13.8677;RPPR=259.244;RPR=5;RUN=1;SAF=0;SAP=13.8677;SAR=5;SRF=0;SRP=259.244;SRR=118;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|0:86:84,0:84:2742:0:0:0,-25.2865,-246.684 0|0:22:21,1:21:712:1:33:0,-3.32352,-61.0988 0|1:17:13,4:13:443:4:124:-6.34984,0,-35.0796 dDocent_Contig_564 19 . T C 2356.49 . AB=0.266187;ABP=69.0137;AC=1;AF=0.166667;AN=6;AO=37;CIGAR=1X3M1X;DP=139;DPB=139;DPRA=0;EPP=83.3548;EPPR=70.3259;GTI=0;LEN=1;MEANALT=2.33333;MQM=60;MQMR=60;NS=3;NUMALT=2;ODDS=2.77556e-17;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=1479;QR=1238;RO=31;RPL=0;RPP=83.3548;RPPR=70.3259;RPR=37;RUN=1;SAF=37;SAP=83.3548;SAR=0;SRF=31;SRP=70.3259;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 1|0:102:19,27,53:19:761:27,53:1079,2115:-194.641,-111.487,-166.054,-26.1786,0,-72.9186 0|0:14:4,3,7:4:153:3,7:121,282:-22.0385,-13.2683,-24.9095,0,-2.55672,-10.4326 0|0:23:8,7,8:8:324:7,8:279,326:-24.4911,-3.92918,-28.5374,0,-3.74871,-24.3118 dDocent_Contig_565 93 . T A 51.5937 . AB=0.12963;ABP=67.3502;AC=1;AF=0.166667;AN=6;AO=7;CIGAR=1X;DP=77;DPB=77;DPRA=4.69565;EPP=18.2106;EPPR=155.013;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=251;QR=2384;RO=70;RPL=7;RPP=18.2106;RPPR=155.013;RPR=0;RUN=1;SAF=7;SAP=18.2106;SAR=0;SRF=70;SRP=155.013;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:54:47,7:47:1601:7:251:-6.68224,0,-128.121 0/0:7:7,0:7:242:0:0:0,-2.10721,-22.1174 0/0:16:16,0:16:541:0:0:0,-4.81648,-49.012 dDocent_Contig_566 12 . G A 1869.96 . AB=0.320513;ABP=68.4885;AC=3;AF=0.5;AN=6;AO=75;CIGAR=1X;DP=234;DPB=234;DPRA=0;EPP=165.871;EPPR=348.274;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=2912;QR=6364;RO=159;RPL=0;RPP=165.871;RPPR=348.274;RPR=75;RUN=1;SAF=75;SAP=165.871;SAR=0;SRF=159;SRP=348.274;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:170:122,48:122:4921:48:1883:-118.514,0,-391.589 0/1:30:12,18:12:481:18:708:-55.0162,0,-34.6087 0/1:34:25,9:25:962:9:321:-18.9891,0,-76.6387 dDocent_Contig_567 8 . T C 19070.7 . AB=0.0417149;ABP=1577.34;AC=0;AF=0;AN=6;AO=36;CIGAR=2X3M1X;DP=863;DPB=863;DPRA=0;EPP=81.1833;EPPR=204.957;GTI=0;LEN=1;MEANALT=11.3333;MQM=14.9722;MQMR=59.871;NS=3;NUMALT=3;ODDS=0;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=1395;QR=3601;RO=93;RPL=0;RPP=81.1833;RPPR=204.957;RPR=36;RUN=1;SAF=36;SAP=81.1833;SAR=0;SRF=93;SRP=204.957;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|0:435:43,28,13,321:43:1652:28,13,321:1101,503,12339:-992.329,-919.213,-1046.39,-991.417,-1040.96,-1123.11,0,-49.558,-121.788,-38.9961 0|0:146:18,12,6,103:18:693:12,6,103:448,235,3880:-309.749,-278.511,-331.797,-309.015,-329.257,-364.105,0,-20.2571,-50.7913,-25.9158 0|0:282:32,16,17,200:32:1256:16,17,200:613,657,7618:-610.514,-572.676,-671.135,-602.653,-658.457,-700.81,0,-55.8327,-85.8499,-43.1053 dDocent_Contig_568 107 . N A 395.065 . AB=0;ABP=0;AC=6;AF=1;AN=6;AO=13;CIGAR=1X;DP=13;DPB=13;DPRA=0;EPP=31.2394;EPPR=0;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=0;NS=3;NUMALT=1;ODDS=0;PAIRED=0.923077;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=422;QR=0;RO=0;RPL=0;RPP=31.2394;RPPR=0;RPR=13;RUN=1;SAF=0;SAP=31.2394;SAR=13;SRF=0;SRP=0;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 1/1:10:0,10:0:0:10:334:-30.3849,-3.0103,0 1/1:2:0,2:0:0:2:56:-5.31935,-0.60206,0 1/1:1:0,1:0:0:1:32:-3.19931,-0.30103,0 dDocent_Contig_569 66 . A G 374.92 . AB=0.244186;ABP=51.8937;AC=2;AF=0.333333;AN=6;AO=22;CIGAR=1X;DP=98;DPB=98;DPRA=0;EPP=50.7827;EPPR=168.042;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=770;QR=2666;RO=76;RPL=22;RPP=50.7827;RPPR=168.042;RPR=0;RUN=1;SAF=22;SAP=50.7827;SAR=0;SRF=76;SRP=168.042;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:63:46,17:46:1618:17:599:-35.2696,0,-126.932 0/0:12:11,1:11:402:1:34:0,-0.213449,-33.1267 0/1:23:19,4:19:646:4:137:-5.74437,0,-51.5358 dDocent_Contig_570 31 . C T 82.5142 . AB=0.0964286;ABP=399.118;AC=1;AF=0.166667;AN=6;AO=46;CIGAR=1X;DP=947;DPB=947;DPRA=0;EPP=94.401;EPPR=1948.65;GTI=0;LEN=1;MEANALT=1.66667;MQM=49.9565;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=0.73913;PAIREDR=0.995536;PAO=0;PQA=0;PQR=0;PRO=0;QA=1813;QR=35574;RO=896;RPL=2;RPP=86.2815;RPPR=1948.65;RPR=44;RUN=1;SAF=45;SAP=94.401;SAR=1;SRF=896;SRP=1948.65;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:472:460,12:460:18247:12:462:0,-101.628,-1600.31 0/0:195:187,7:187:7364:7:279:0,-33.9383,-637.578 0/1:280:249,27:249:9963:27:1072:-10.0753,0,-812.548 dDocent_Contig_571 55 . C T 68.2142 . AB=0.181818;ABP=22.3561;AC=1;AF=0.166667;AN=6;AO=9;CIGAR=1X;DP=1185;DPB=1185;DPRA=13.9512;EPP=22.5536;EPPR=2554.49;GTI=0;LEN=1;MEANALT=1.5;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=0.111111;PAIREDR=0.990638;PAO=0;PQA=0;PQR=0;PRO=0;QA=353;QR=46192;RO=1175;RPL=9;RPP=22.5536;RPPR=2554.49;RPR=0;RUN=1;SAF=9;SAP=22.5536;SAR=0;SRF=1175;SRP=2554.49;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:22:18,4:18:705:4:162:-8.3443,0,-57.1538 0/0:1122:1116,5:1116:43837:5:191:0,-320.047,-3924.02 0/0:41:41,0:41:1650:0:0:0,-12.3422,-148.725 dDocent_Contig_572 22 . T C 32375.2 . AB=0.754065;ABP=554.706;AC=4;AF=0.666667;AN=6;AO=1008;CIGAR=1X4M;DP=1307;DPB=1307;DPRA=0;EPP=2191.85;EPPR=280.959;GTI=0;LEN=1;MEANALT=5.66667;MQM=59.9177;MQMR=60;NS=3;NUMALT=2;ODDS=0;PAIRED=0.987103;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=39839;QR=5052;RO=128;RPL=0;RPP=2191.85;RPPR=280.959;RPR=1008;RUN=1;SAF=1008;SAP=2191.85;SAR=0;SRF=128;SRP=280.959;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|1:864:84,59,651:84:3344:59,651:2323,25654:-2084.49,-1918.68,-2176.27,0,-84.258,-79.3793 0|1:120:19,9,91:19:757:9,91:343,3610:-291.427,-269.014,-328.643,0,-34.2189,-34.9535 1|1:323:25,18,266:25:951:18,266:704,10575:-865.132,-814.781,-887.345,-2.09532,-22.1957,0 dDocent_Contig_573 14 . T G 1296.72 . AB=0.37037;ABP=22.7144;AC=3;AF=0.5;AN=6;AO=50;CIGAR=1X;DP=135;DPB=135;DPRA=0;EPP=111.584;EPPR=187.585;GTI=0;LEN=1;MEANALT=1;MQM=58.08;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=0;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=1972;QR=3435;RO=85;RPL=0;RPP=111.584;RPPR=187.585;RPR=50;RUN=1;SAF=50;SAP=111.584;SAR=0;SRF=85;SRP=187.585;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:85:54,31:54:2191:31:1224:-84.8535,0,-171.764 0/1:20:14,6:14:561:6:233:-12.6774,0,-44.8125 0/1:30:17,13:17:683:13:515:-37.6643,0,-52.7638 dDocent_Contig_574 11 . A G 283.191 . AB=0.1875;ABP=30.1537;AC=2;AF=0.333333;AN=6;AO=6;CIGAR=1X2M1X;DP=82;DPB=82;DPRA=0;EPP=16.0391;EPPR=144.156;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=2;ODDS=6.93889e-18;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=232;QR=2562;RO=65;RPL=0;RPP=16.0391;RPPR=144.156;RPR=6;RUN=1;SAF=6;SAP=16.0391;SAR=0;SRF=65;SRP=144.156;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|0:50:39,0,10:39:1548:0,10:0,407:-21.8397,-33.5799,-161.001,0,-127.426,-124.415 0|1:19:16,3,0:16:625:3,0:115,0:-5.00532,0,-50.8627,-9.8218,-51.7658,-61.2035 0|1:13:10,3,0:10:389:3,0:117,0:-6.99682,0,-31.449,-10.0071,-32.3521,-41.9698 dDocent_Contig_575 117 . C T 9524.13 . AB=0.75;ABP=22.5536;AC=5;AF=0.833333;AN=6;AO=348;CIGAR=1X;DP=381;DPB=381;DPRA=0;EPP=758.683;EPPR=74.6689;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=11467;QR=1052;RO=33;RPL=0;RPP=758.683;RPPR=74.6689;RPR=348;RUN=1;SAF=0;SAP=758.683;SAR=348;SRF=0;SRP=74.6689;SRR=33;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 1/1:239:15,224:15:469:224:7391:-622.802,-29.4339,0 0/1:36:9,27:9:304:27:867:-67.4937,0,-16.852 1/1:106:9,97:9:279:97:3209:-263.64,-6.49494,0 dDocent_Contig_577 25 . C A 7007.55 . AB=0.751938;ABP=145.25;AC=4;AF=0.666667;AN=6;AO=215;CIGAR=1M1X7M;DP=279;DPB=268.111;DPRA=0;EPP=469.877;EPPR=87.6977;GTI=0;LEN=1;MEANALT=2;MQM=60;MQMR=60;NS=3;NUMALT=3;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=8610;QR=1535;RO=39;RPL=0;RPP=469.877;RPPR=87.6977;RPR=215;RUN=1;SAF=215;SAP=469.877;SAR=0;SRF=39;SRP=87.6977;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|1:176:22,0,14,139:22:868:0,14,139:0,527,5565:-451.827,-458.449,-529.869,-415.281,-486.7,-482.485,0,-71.4294,-28.2658,-29.5862 1|1:21:0,0,0,21:0:0:0,0,21:0,0,852:-76.9913,-76.9913,-76.9913,-76.9913,-76.9913,-76.9913,-6.32163,-6.32163,-6.32163,0 0|1:82:17,10,0,55:17:667:10,0,55:403,0,2193:-175.46,-147.36,-199.202,-180.578,-202.212,-235.43,0,-21.626,-54.8472,-38.2905 dDocent_Contig_578 34 . T A 1256.6 . AB=0.347826;ABP=30.7674;AC=3;AF=0.5;AN=6;AO=48;CIGAR=1X;DP=138;DPB=138;DPRA=0;EPP=107.241;EPPR=198.443;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=1908;QR=3617;RO=90;RPL=0;RPP=107.241;RPPR=198.443;RPR=48;RUN=1;SAF=48;SAP=107.241;SAR=0;SRF=90;SRP=198.443;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:80:55,25:55:2203:25:985:-64.8652,0,-174.357 0/1:24:10,14:10:401:14:560:-43.5188,0,-29.2257 0/1:34:25,9:25:1013:9:363:-22.7993,0,-81.2282 dDocent_Contig_579 34 . A G 617.517 . AB=0.206897;ABP=111.21;AC=1;AF=0.166667;AN=6;AO=33;CIGAR=1X;DP=212;DPB=212;DPRA=6.125;EPP=74.6689;EPPR=391.704;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=1303;QR=7171;RO=179;RPL=0;RPP=74.6689;RPPR=391.704;RPR=33;RUN=1;SAF=33;SAP=74.6689;SAR=0;SRF=179;SRP=391.704;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:145:115,30:115:4619:30:1185:-63.2745,0,-371.973 0/0:16:16,0:16:645:0:0:0,-4.81648,-58.3835 0/0:51:48,3:48:1907:3:118:0,-4.35095,-160.828 dDocent_Contig_580 7 . A T 8705.28 . AB=0.157778;ABP=460.776;AC=1;AF=0.166667;AN=6;AO=71;CIGAR=1X2M1X1M;DP=450;DPB=450;DPRA=0;EPP=157.185;EPPR=135.47;GTI=0;LEN=1;MEANALT=3;MQM=60;MQMR=60;NS=3;NUMALT=3;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=2737;QR=2334;RO=61;RPL=0;RPP=157.185;RPPR=135.47;RPR=71;RUN=1;SAF=71;SAP=157.185;SAR=0;SRF=61;SRP=135.47;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|0:255:30,48,51,126:30:1148:48,51,126:1851,2016,5035:-477.37,-334.401,-414.155,-320.507,-262.711,-399.358,-71.6943,-13.898,0,-127.968 1|0:73:7,13,8,45:7:271:13,8,45:499,320,1780:-163.072,-124.22,-142.568,-138.818,-120.121,-158.672,-18.6947,0,-14.5926,-27.4101 0|0:122:24,10,14,74:24:915:10,14,74:387,558,2949:-235.61,-211.045,-283.092,-196.884,-240.151,-267.727,0,-43.264,-29.0997,-52.7783 dDocent_Contig_581 23 . T A 2509 . AB=0.0625;ABP=508.421;AC=0;AF=0;AN=6;AO=19;CIGAR=1X1M1I2M;DP=342;DPB=372.25;DPRA=0;EPP=44.2683;EPPR=482.906;GTI=0;LEN=1;MEANALT=2.5;MQM=60;MQMR=60;NS=3;NUMALT=2;ODDS=2.77556e-17;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=742;QR=8553;RO=221;RPL=0;RPP=44.2683;RPPR=482.906;RPR=19;RUN=1;SAF=19;SAP=44.2683;SAR=0;SRF=221;SRP=482.906;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|0:222:153,6,63:153:5913:6,63:239,2473:-157.301,-183.677,-667.486,0,-465.927,-466.643 0|0:38:30,0,8:30:1171:0,8:0,323:-17.9994,-27.0303,-123.28,0,-96.6502,-94.242 0|0:82:38,13,30:38:1469:13,30:503,1130:-81.1225,-51.2496,-167.993,0,-79.3415,-111.62 dDocent_Contig_582 142 . G A 675.212 . AB=0.329897;ABP=27.389;AC=3;AF=0.5;AN=6;AO=32;CIGAR=1X;DP=97;DPB=97;DPRA=0;EPP=72.4974;EPPR=144.156;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=1125;QR=2317;RO=65;RPL=0;RPP=72.4974;RPPR=144.156;RPR=32;RUN=1;SAF=0;SAP=72.4974;SAR=32;SRF=0;SRP=144.156;SRR=65;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:41:33,8:33:1174:8:268:-12.1015,0,-93.616 0/1:17:13,4:13:471:4:141:-7.91907,0,-37.6123 0/1:39:19,20:19:672:20:716:-53.0235,0,-49.0582 dDocent_Contig_583 8 . C T 4593.51 . AB=0.441799;ABP=14.1319;AC=3;AF=0.5;AN=6;AO=167;CIGAR=1X;DP=378;DPB=378;DPRA=0;EPP=365.646;EPPR=461.191;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=6422;QR=8113;RO=211;RPL=0;RPP=365.646;RPPR=461.191;RPR=167;RUN=1;SAF=167;SAP=365.646;SAR=0;SRF=211;SRP=461.191;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:224:105,119:105:4040:119:4571:-344.01,0,-296.254 0/1:53:34,19:34:1293:19:732:-50.2565,0,-100.704 0/1:101:72,29:72:2780:29:1119:-70.6076,0,-219.973 dDocent_Contig_584 8 . C T 28322.7 . AB=0.480868;ABP=11.07;AC=3;AF=0.5;AN=6;AO=1219;CIGAR=1X;DP=2535;DPB=2535;DPRA=0;EPP=2650.04;EPPR=2821.58;GTI=0;LEN=1;MEANALT=2;MQM=42.8655;MQMR=50.5339;NS=3;NUMALT=1;ODDS=0;PAIRED=0.969647;PAIREDR=0.889831;PAO=0;PQA=0;PQR=0;PRO=0;QA=46825;QR=49825;RO=1298;RPL=0;RPP=2650.04;RPPR=2821.58;RPR=1219;RUN=1;SAF=1219;SAP=2650.04;SAR=0;SRF=1298;SRP=2821.58;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:1536:769,753:769:29575:753:28909:-1775.83,0,-2090.71 0/1:305:157,147:157:6001:147:5636:-323.283,0,-404.808 0/1:694:372,319:372:14249:319:12280:-738.674,0,-1004.24 dDocent_Contig_586 14 . T C 295.424 . AB=0.215385;ABP=48.7448;AC=2;AF=0.333333;AN=6;AO=20;CIGAR=1X;DP=225;DPB=225;DPRA=0;EPP=46.4397;EPPR=448.162;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=805;QR=8222;RO=205;RPL=0;RPP=46.4397;RPPR=448.162;RPR=20;RUN=1;SAF=20;SAP=46.4397;SAR=0;SRF=205;SRP=448.162;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:160:154,6:154:6185:6:239:0,-26.2824,-534.491 0/1:23:21,2:21:837:2:81:-0.762044,0,-68.7148 0/1:42:30,12:30:1200:12:485:-31.358,0,-95.6312 dDocent_Contig_587 49 . T A 4619.68 . AB=0.696682;ABP=73.9073;AC=3;AF=0.5;AN=6;AO=147;CIGAR=1X;DP=211;DPB=211;DPRA=0;EPP=296.691;EPPR=141.985;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=1.38778e-17;PAIRED=0.979592;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=5883;QR=2571;RO=64;RPL=3;RPP=296.691;RPPR=141.985;RPR=144;RUN=1;SAF=147;SAP=322.217;SAR=0;SRF=64;SRP=141.985;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:132:43,89:43:1741:89:3569:-281.498,0,-117.166 0/1:22:2,20:2:81:20:798:-65.5134,0,-1.06307 0/1:57:19,38:19:749:38:1516:-119.527,0,-50.5686 dDocent_Contig_589 112 . A T 2617.13 . AB=0.540816;ABP=5.84651;AC=3;AF=0.5;AN=6;AO=106;CIGAR=1X;DP=196;DPB=196;DPRA=0;EPP=233.186;EPPR=198.443;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=57.4333;NS=3;NUMALT=1;ODDS=0;PAIRED=0.962264;PAIREDR=0.911111;PAO=0;PQA=0;PQR=0;PRO=0;QA=3615;QR=3254;RO=90;RPL=0;RPP=233.186;RPPR=198.443;RPR=106;RUN=1;SAF=0;SAP=233.186;SAR=106;SRF=0;SRP=198.443;SRR=90;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:105:48,57:48:1727:57:1958:-144.88,0,-119.57 0/1:40:13,27:13:476:27:883:-67.7271,0,-31.1411 0/1:51:29,22:29:1051:22:774:-54.6287,0,-78.3422 dDocent_Contig_590 15 . G A 67.1262 . AB=0.151515;ABP=37.8197;AC=1;AF=0.166667;AN=6;AO=8;CIGAR=1X;DP=242;DPB=242;DPRA=0.296053;EPP=20.3821;EPPR=511.135;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=323;QR=9079;RO=234;RPL=0;RPP=20.3821;RPPR=511.135;RPR=8;RUN=1;SAF=8;SAP=20.3821;SAR=0;SRF=234;SRP=511.135;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:152:152,0:152:5933:0:0:0,-45.7566,-533.781 0/1:33:28,5:28:1029:5:201:-8.53653,0,-82.9525 0/0:57:54,3:54:2117:3:122:0,-5.78622,-179.338 dDocent_Contig_591 31 . T A 79.7008 . AB=0.14;ABP=59.2949;AC=1;AF=0.166667;AN=6;AO=12;CIGAR=1X;DP=146;DPB=146;DPRA=0;EPP=29.068;EPPR=293.988;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=471;QR=5196;RO=134;RPL=0;RPP=29.068;RPPR=293.988;RPR=12;RUN=1;SAF=12;SAP=29.068;SAR=0;SRF=134;SRP=293.988;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:61:58,3:58:2218:3:118:0,-7.36011,-188.796 0/1:50:43,7:43:1707:7:272:-9.79399,0,-138.809 0/0:35:33,2:33:1271:2:81:0,-2.85032,-106.986 dDocent_Contig_592 17 . C T 3442.54 . AB=0.335038;ABP=95.4284;AC=3;AF=0.5;AN=6;AO=131;CIGAR=1X;DP=391;DPB=391;DPRA=0;EPP=287.473;EPPR=567.593;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=5187;QR=10399;RO=260;RPL=0;RPP=287.473;RPPR=567.593;RPR=131;RUN=1;SAF=131;SAP=287.473;SAR=0;SRF=260;SRP=567.593;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:205:146,59:146:5818:59:2359:-150.751,0,-461.7 0/1:85:58,27:58:2342:27:1059:-70.0098,0,-185.34 0/1:101:56,45:56:2239:45:1769:-129.017,0,-171.265 dDocent_Contig_593 21 . A G 548.071 . AB=0.258065;ABP=50.2924;AC=3;AF=0.5;AN=6;AO=24;CIGAR=1M1I3M1X;DP=93;DPB=97.8;DPRA=0;EPP=55.1256;EPPR=152.842;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=6.93889e-18;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=969;QR=2742;RO=69;RPL=0;RPP=55.1256;RPPR=152.842;RPR=24;RUN=1;SAF=24;SAP=55.1256;SAR=0;SRF=69;SRP=152.842;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|1:59:40,19:40:1581:19:766:-51.5018,0,-124.774 0|1:14:12,2:12:478:2:81:-3.47131,0,-39.1577 0|1:20:17,3:17:683:3:122:-5.35189,0,-55.7812 dDocent_Contig_594 98 . N G 70.3937 . AB=0;ABP=0;AC=4;AF=1;AN=4;AO=2;CIGAR=3X2I7X;DP=3;DPB=3.8;DPRA=2;EPP=7.35324;EPPR=0;GTI=0;LEN=1;MEANALT=1;MQM=48;MQMR=0;NS=2;NUMALT=1;ODDS=0;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=73;QR=0;RO=0;RPL=0;RPP=7.35324;RPPR=0;RPR=2;RUN=1;SAF=2;SAP=7.35324;SAR=0;SRF=0;SRP=0;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 1|1:1:0,0:0:0:0:0:0,0,0 1|1:2:0,2:0:0:2:73:-6.86147,-0.60206,0 .:.:.:.:.:.:.:. dDocent_Contig_596 7 . C A 10257.8 . AB=0.108541;ABP=751.048;AC=0;AF=0;AN=6;AO=61;CIGAR=1X1M1X;DP=562;DPB=562;DPRA=0;EPP=135.47;EPPR=328.731;GTI=0;LEN=1;MEANALT=4.33333;MQM=21.4098;MQMR=60;NS=3;NUMALT=2;ODDS=0;PAIRED=0.377049;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=2330;QR=5704;RO=150;RPL=0;RPP=135.47;RPPR=328.731;RPR=61;RUN=1;SAF=61;SAP=135.47;SAR=0;SRF=150;SRP=328.731;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|0:261:81,23,151:81:3076:23,151:882,5833:-454.476,-446.986,-692.304,0,-220.514,-206.918 0|0:82:20,15,46:20:762:15,46:575,1765:-138.948,-116.184,-174.175,0,-33.8154,-48.7307 0|0:219:49,23,143:49:1866:23,143:873,5529:-437.882,-432.811,-578.947,0,-133.424,-110.157 dDocent_Contig_603 38 . A C 380.289 . AB=0.257576;ABP=36.701;AC=1;AF=0.166667;AN=6;AO=24;CIGAR=1X;DP=176;DPB=176;DPRA=3.9;EPP=55.1256;EPPR=333.074;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=945;QR=6065;RO=152;RPL=0;RPP=55.1256;RPPR=333.074;RPR=24;RUN=1;SAF=24;SAP=55.1256;SAR=0;SRF=152;SRP=333.074;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:90:83,7:83:3294:7:285:0,-1.0685,-270.481 0/0:20:20,0:20:801:0:0:0,-6.0206,-72.4067 0/1:66:49,17:49:1970:17:660:-39.8527,0,-157.623 dDocent_Contig_604 120 . A C 3127.34 . AB=0.688172;ABP=60.2158;AC=3;AF=0.5;AN=6;AO=128;CIGAR=1X;DP=186;DPB=186;DPRA=0;EPP=280.959;EPPR=128.956;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=4149;QR=1874;RO=58;RPL=0;RPP=280.959;RPPR=128.956;RPR=128;RUN=1;SAF=0;SAP=280.959;SAR=128;SRF=0;SRP=128.956;SRR=58;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:125:30,95:30:978:95:3116:-243.057,0,-50.6913 0/1:14:4,10:4:138:10:302:-23.2601,0,-8.54603 0/1:47:24,23:24:758:23:731:-51.9401,0,-54.3682 dDocent_Contig_605 37 . C T 640.884 . AB=0.225131;ABP=128.353;AC=3;AF=0.5;AN=6;AO=43;CIGAR=1X;DP=191;DPB=191;DPRA=0;EPP=96.3836;EPPR=324.388;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=1.38778e-17;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=1402;QR=5873;RO=148;RPL=0;RPP=96.3836;RPPR=324.388;RPR=43;RUN=1;SAF=43;SAP=96.3836;SAR=0;SRF=148;SRP=324.388;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:92:71,21:71:2826:21:685:-34.2587,0,-226.754 0/1:51:39,12:39:1547:12:400:-20.9661,0,-124.123 0/1:48:38,10:38:1500:10:317:-14.3865,0,-120.784 dDocent_Contig_606 150 . A T 55.1795 . AB=0.222222;ABP=15.074;AC=1;AF=0.166667;AN=6;AO=5;CIGAR=1M1I1X;DP=106;DPB=108.5;DPRA=0.291045;EPP=13.8677;EPPR=222.329;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=173;QR=3458;RO=101;RPL=0;RPP=13.8677;RPPR=222.329;RPR=5;RUN=1;SAF=0;SAP=13.8677;SAR=5;SRF=0;SRP=222.329;SRR=101;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|0:67:67,0:67:2321:0:0:0,-20.169,-209.15 0|0:21:20,1:20:672:1:35:0,-2.823,-57.2924 0|1:18:14,4:14:465:4:138:-7.34186,0,-36.7474 dDocent_Contig_607 29 . G A 2852.38 . AB=0.611842;ABP=19.5249;AC=3;AF=0.5;AN=6;AO=93;CIGAR=1X;DP=152;DPB=152;DPRA=0;EPP=204.957;EPPR=131.127;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=3730;QR=2333;RO=59;RPL=0;RPP=204.957;RPPR=131.127;RPR=93;RUN=1;SAF=93;SAP=204.957;SAR=0;SRF=59;SRP=131.127;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:86:37,49:37:1467:49:1964:-151.07,0,-106.389 0/1:26:6,20:6:239:20:801:-64.5818,0,-14.0576 0/1:40:16,24:16:627:24:965:-75.1091,0,-44.72 dDocent_Contig_608 109 . G A 1080.09 . AB=0.605634;ABP=9.89173;AC=3;AF=0.5;AN=6;AO=43;CIGAR=1X2M1X;DP=71;DPB=71;DPRA=0;EPP=96.3836;EPPR=63.8115;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=1488;QR=963;RO=28;RPL=0;RPP=96.3836;RPPR=63.8115;RPR=43;RUN=1;SAF=0;SAP=96.3836;SAR=43;SRF=0;SRP=63.8115;SRR=28;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|1:21:7,14:7:245:14:471:-36.389,0,-16.0695 0|1:28:8,20:8:274:20:698:-54.7139,0,-16.5649 0|1:22:13,9:13:444:9:319:-22.4292,0,-33.664 dDocent_Contig_609 11 . A T 1334.84 . AB=0.231076;ABP=160.68;AC=2;AF=0.333333;AN=6;AO=58;CIGAR=1M2X6M1X;DP=251;DPB=258;DPRA=0;EPP=128.956;EPPR=346.103;GTI=0;LEN=1;MEANALT=3;MQM=60;MQMR=60;NS=3;NUMALT=3;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=2234;QR=6099;RO=158;RPL=0;RPP=128.956;RPPR=346.103;RPR=58;RUN=1;SAF=58;SAP=128.956;SAR=0;SRF=158;SRP=346.103;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|0:139:94,14,15,14:94:3636:14,15,14:549,572,534:-18.6232,-1.76809,-296.214,0,-253.507,-294.141,-3.11871,-256.626,-254.854,-297.561 0|1:42:29,0,0,11:29:1104:0,0,11:0,0,418:-25.5456,-34.2754,-124.825,-34.2754,-124.825,-124.825,0,-90.5457,-90.5457,-87.2344 0|1:70:35,0,1,33:35:1359:0,1,33:0,31,1282:-94.8358,-105.372,-217.036,-102.886,-214.549,-214.248,0,-111.695,-109.208,-101.761 dDocent_Contig_610 110 . A G 62.6051 . AB=0.125;ABP=130.041;AC=2;AF=0.333333;AN=6;AO=26;CIGAR=1X;DP=287;DPB=287;DPRA=0;EPP=59.4686;EPPR=569.765;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=888;QR=8933;RO=261;RPL=0;RPP=59.4686;RPPR=569.765;RPR=26;RUN=1;SAF=0;SAP=59.4686;SAR=26;SRF=0;SRP=569.765;SRR=261;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:183:170,13:170:5841:13:439:0,-15.2549,-486.007 0/1:32:27,5:27:930:5:173:-6.27725,0,-74.3804 0/1:72:64,8:64:2162:8:276:-3.50159,0,-173.175 dDocent_Contig_611 49 . G C 5619.21 . AB=0.78744;ABP=151.562;AC=4;AF=0.666667;AN=6;AO=176;CIGAR=1X;DP=220;DPB=220;DPRA=0;EPP=385.189;EPPR=92.0407;GTI=0;LEN=1;MEANALT=1.33333;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=6964;QR=1663;RO=41;RPL=0;RPP=385.189;RPPR=92.0407;RPR=176;RUN=1;SAF=176;SAP=385.189;SAR=0;SRF=41;SRP=92.0407;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:137:21,113:21:854:113:4458:-360.43,0,-36.4435 1/1:13:0,13:0:0:13:523:-47.4177,-3.91339,0 0/1:70:20,50:20:809:50:1983:-157.596,0,-52.0512 dDocent_Contig_612 98 . N A 348.502 . AB=0;ABP=0;AC=6;AF=1;AN=6;AO=12;CIGAR=1X;DP=13;DPB=13;DPRA=0;EPP=29.068;EPPR=0;GTI=0;LEN=1;MEANALT=1.33333;MQM=60;MQMR=0;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=373;QR=0;RO=0;RPL=12;RPP=29.068;RPPR=0;RPR=0;RUN=1;SAF=12;SAP=29.068;SAR=0;SRF=0;SRP=0;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 1/1:6:0,6:0:0:6:177:-16.2212,-1.80618,0 1/1:4:0,3:0:0:3:101:-9.28713,-0.90309,0 1/1:3:0,3:0:0:3:95:-8.86438,-0.90309,0 dDocent_Contig_613 23 . A C 69.8944 . AB=0.25;ABP=13.8677;AC=2;AF=0.333333;AN=6;AO=5;CIGAR=1X;DP=40;DPB=40;DPRA=0.5;EPP=13.8677;EPPR=79.0118;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=176;QR=1397;RO=35;RPL=0;RPP=13.8677;RPPR=79.0118;RPR=5;RUN=1;SAF=5;SAP=13.8677;SAR=0;SRF=35;SRP=79.0118;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:20:20,0:20:792:0:0:0,-6.0206,-71.597 0/1:10:7,3:7:280:3:114:-7.61892,0,-22.5604 0/1:10:8,2:8:325:2:62:-2.87449,0,-26.6093 dDocent_Contig_614 16 . C A 277.017 . AB=0.434783;ABP=3.86001;AC=1;AF=0.166667;AN=6;AO=12;CIGAR=1X;DP=59;DPB=59;DPRA=0;EPP=29.068;EPPR=105.07;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=483;QR=1886;RO=47;RPL=0;RPP=29.068;RPPR=105.07;RPR=12;RUN=1;SAF=12;SAP=29.068;SAR=0;SRF=47;SRP=105.07;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:20:19,1:19:776:1:41:0,-1.92603,-66.0634 0/1:23:13,10:13:513:10:401:-29.5253,0,-39.5935 0/0:16:15,1:15:597:1:41:0,-0.721913,-49.9704 dDocent_Contig_615 19 . G A 624.271 . AB=0.166667;ABP=228.843;AC=2;AF=0.333333;AN=6;AO=39;CIGAR=1X;DP=275;DPB=275;DPRA=2.85366;EPP=87.6977;EPPR=506.792;GTI=0;LEN=1;MEANALT=2;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=1507;QR=8819;RO=232;RPL=0;RPP=87.6977;RPPR=506.792;RPR=39;RUN=1;SAF=39;SAP=87.6977;SAR=0;SRF=232;SRP=506.792;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:164:134,28:134:5159:28:1083:-48.5988,0,-415.115 0/0:41:40,0:40:1498:0:0:0,-12.0412,-134.689 0/1:70:58,11:58:2162:11:424:-17.3512,0,-173.646 dDocent_Contig_616 63 . T G 79.8476 . AB=0.129032;ABP=77.1206;AC=1;AF=0.166667;AN=6;AO=9;CIGAR=1X;DP=123;DPB=123;DPRA=4.23077;EPP=22.5536;EPPR=250.558;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=349;QR=4166;RO=114;RPL=9;RPP=22.5536;RPPR=250.558;RPR=0;RUN=1;SAF=9;SAP=22.5536;SAR=0;SRF=114;SRP=250.558;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:62:54,8:54:2002:8:309:-9.50764,0,-161.759 0/0:13:13,0:13:487:0:0:0,-3.91339,-44.1737 0/0:48:47,1:47:1677:1:40:0,-10.4538,-147.191 dDocent_Contig_618 47 . G T 352.259 . AB=0.220779;ABP=55.1538;AC=2;AF=0.333333;AN=6;AO=18;CIGAR=1X;DP=129;DPB=129;DPRA=0;EPP=42.0968;EPPR=244.044;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=721;QR=4444;RO=111;RPL=0;RPP=42.0968;RPPR=244.044;RPR=18;RUN=1;SAF=18;SAP=42.0968;SAR=0;SRF=111;SRP=244.044;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:52:51,1:51:2041:1:41:0,-11.559,-179.783 0/1:37:29,8:29:1155:8:325:-18.4815,0,-93.0963 0/1:40:31,9:31:1248:9:355:-20.2672,0,-100.548 dDocent_Contig_619 13 . A G 10125.4 . AB=0.725664;ABP=202.939;AC=3;AF=0.5;AN=6;AO=328;CIGAR=1X2M;DP=452;DPB=452;DPRA=0;EPP=715.253;EPPR=215.815;GTI=0;LEN=1;MEANALT=3;MQM=57.5427;MQMR=60;NS=3;NUMALT=2;ODDS=5.55112e-17;PAIRED=0.128049;PAIREDR=0.918367;PAO=0;PQA=0;PQR=0;PRO=0;QA=12834;QR=3893;RO=98;RPL=0;RPP=715.253;RPPR=215.815;RPR=328;RUN=1;SAF=328;SAP=715.253;SAR=0;SRF=98;SRP=215.815;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|1:145:29,1,114:29:1170:1,114:41,4476:-356.129,-361.474,-457.622,0,-93.0616,-62.1285 0|1:199:51,13,129:51:2007:13,129:518,5040:-397.209,-370.549,-531.734,0,-123.087,-126.267 0|1:108:18,2,85:18:716:2,85:79,3318:-264.724,-263.641,-321.993,0,-52.4532,-33.3664 dDocent_Contig_620 16 . T C 80.1845 . AB=0.0454545;ABP=121.454;AC=1;AF=0.166667;AN=6;AO=3;CIGAR=2M1X1M2X3M2X3M2X5M;DP=103;DPB=104.857;DPRA=0;EPP=9.52472;EPPR=150.67;GTI=0;LEN=1;MEANALT=8.5;MQM=32.3333;MQMR=60;NS=3;NUMALT=5;ODDS=0;PAIRED=0;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=97;QR=2685;RO=68;RPL=0;RPP=9.52472;RPPR=150.67;RPR=3;RUN=1;SAF=3;SAP=9.52472;SAR=0;SRF=68;SRP=150.67;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|0:34:22,0,1,0,1,4:22:870:0,1,0,1,4:0,40,0,31,152:-4.93905,-11.5617,-83.1932,-9.12268,-80.7527,-80.4517,-11.5617,-83.1932,-80.7527,-83.1932,-9.34941,-80.9779,-78.5376,-80.9779,-80.6769,0,-71.6393,-69.1993,-71.6393,-69.4246,-70.4352 0|0:37:28,5,1,0,0,0:28:1101:5,1,0,0,0:173,39,0,0,0:-4.28872,0,-89.1369,-10.2869,-88.2131,-100.613,-12.7176,-90.6421,-100.914,-103.344,-12.7176,-90.6421,-100.914,-103.344,-103.344,-12.7176,-90.6421,-100.914,-103.344,-103.344,-103.344 0|1:32:18,0,4,3,2,0:18:714:0,4,3,2,0:0,158,106,66,0:-4.30976,-9.7283,-68.542,0,-58.8125,-57.6083,-1.81965,-60.6367,-50.9089,-59.7336,-4.93694,-63.7501,-54.022,-55.8457,-63.1481,-9.7283,-68.542,-58.8125,-60.6367,-63.7501,-68.542 dDocent_Contig_621 128 . G A 159.946 . AB=0.151261;ABP=128.718;AC=3;AF=0.5;AN=6;AO=18;CIGAR=1X;DP=119;DPB=119;DPRA=0;EPP=42.0968;EPPR=222.329;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=626;QR=3618;RO=101;RPL=0;RPP=42.0968;RPPR=222.329;RPR=18;RUN=1;SAF=0;SAP=42.0968;SAR=18;SRF=0;SRP=222.329;SRR=101;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:74:64,10:64:2284:10:359:-10.3757,0,-183.533 0/1:17:13,4:13:470:4:134:-7.27231,0,-37.5216 0/1:28:24,4:24:864:4:133:-3.86757,0,-69.6497 dDocent_Contig_622 10 . T A 14314.6 . AB=0.0766129;ABP=775.284;AC=0;AF=0;AN=6;AO=40;CIGAR=1X1M1X3M;DP=572;DPB=572;DPRA=0;EPP=89.8692;EPPR=131.127;GTI=0;LEN=1;MEANALT=3.66667;MQM=60;MQMR=60;NS=3;NUMALT=3;ODDS=5.55112e-17;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=1588;QR=2283;RO=59;RPL=0;RPP=89.8692;RPPR=131.127;RPR=40;RUN=1;SAF=40;SAP=89.8692;SAR=0;SRF=59;SRP=131.127;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|0:322:33,28,9,244:33:1284:28,9,244:1109,359,9757:-793.739,-712.399,-809.476,-774.109,-788.341,-876.906,0,-14.2281,-75.9387,-32.0524 0|0:76:4,2,0,70:4:152:2,0,70:79,0,2742:-232.842,-227.546,-239.405,-234.046,-240.007,-246.508,-8.62027,-14.5665,-21.0721,0 0|0:174:22,10,14,128:22:847:10,14,128:400,520,5045:-408.402,-382.074,-448.599,-372.481,-409.065,-437.801,0,-36.5828,-26.9966,-31.0049 dDocent_Contig_623 18 . C T 105.809 . AB=0.181818;ABP=32.0291;AC=1;AF=0.166667;AN=6;AO=6;CIGAR=1X;DP=86;DPB=86;DPRA=1.24528;EPP=16.0391;EPPR=176.728;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=244;QR=3169;RO=80;RPL=0;RPP=16.0391;RPPR=176.728;RPR=6;RUN=1;SAF=6;SAP=16.0391;SAR=0;SRF=80;SRP=176.728;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:19:19,0:19:770:0:0:0,-5.71957,-69.6207 0/0:34:34,0:34:1325:0:0:0,-10.235,-119.504 0/1:33:27,6:27:1074:6:244:-12.4048,0,-87.0154 dDocent_Contig_624 20 . T A 1302.89 . AB=0.304094;ABP=60.0146;AC=3;AF=0.5;AN=6;AO=52;CIGAR=1X1M1X;DP=171;DPB=171;DPRA=0;EPP=115.927;EPPR=261.416;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=1.38778e-17;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=2070;QR=4735;RO=119;RPL=0;RPP=115.927;RPPR=261.416;RPR=52;RUN=1;SAF=52;SAP=115.927;SAR=0;SRF=119;SRP=261.416;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|1:108:75,33:75:2979:33:1318:-86.3763,0,-235.703 0|1:26:21,5:21:840:5:199:-10.4618,0,-68.0889 0|1:37:23,14:23:916:14:553:-38.9734,0,-71.6066 dDocent_Contig_625 9 . A G 40.0633 . AB=0.206897;ABP=24.6501;AC=2;AF=0.333333;AN=6;AO=6;CIGAR=1X2M1D1M;DP=66;DPB=64.4;DPRA=0.391892;EPP=16.0391;EPPR=128.956;GTI=0;LEN=1;MEANALT=2;MQM=31.3333;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=0.833333;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=228;QR=2240;RO=58;RPL=0;RPP=16.0391;RPPR=128.956;RPR=6;RUN=1;SAF=6;SAP=16.0391;SAR=0;SRF=58;SRP=128.956;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|0:37:37,0:37:1429:0:0:0,-11.1381,-128.882 0|1:14:10,3:10:381:3:114:-2.73946,0,-30.363 0|1:15:11,3:11:430:3:114:-4.76386,0,-34.4614 dDocent_Contig_626 29 . T C 232.764 . AB=0.164835;ABP=91.802;AC=2;AF=0.333333;AN=6;AO=16;CIGAR=1X;DP=121;DPB=121;DPRA=0;EPP=37.7539;EPPR=231.015;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=635;QR=4157;RO=105;RPL=0;RPP=37.7539;RPPR=231.015;RPR=16;RUN=1;SAF=16;SAP=37.7539;SAR=0;SRF=105;SRP=231.015;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:57:47,10:47:1861:10:397:-18.9279,0,-150.54 0/1:34:29,5:29:1162:5:197:-7.87138,0,-94.6269 0/0:30:29,1:29:1134:1:41:0,-4.93633,-98.2406 dDocent_Contig_627 10 . T C 51.6723 . AB=0.136364;ABP=53.5464;AC=1;AF=0.166667;AN=6;AO=9;CIGAR=1X;DP=280;DPB=280;DPRA=0;EPP=22.5536;EPPR=591.479;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=0.98893;PAO=0;PQA=0;PQR=0;PRO=0;QA=344;QR=10882;RO=271;RPL=0;RPP=22.5536;RPPR=591.479;RPR=9;RUN=1;SAF=9;SAP=22.5536;SAR=0;SRF=271;SRP=591.479;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:159:158,1:158:6347:1:41:0,-43.7692,-566.862 0/1:44:38,6:38:1525:6:221:-6.99114,0,-124.24 0/0:77:75,2:75:3010:2:82:0,-15.3996,-263.203 dDocent_Contig_628 90 . G A 111.811 . AB=0.384615;ABP=4.51363;AC=1;AF=0.166667;AN=6;AO=5;CIGAR=1X;DP=45;DPB=45;DPRA=0.8125;EPP=13.8677;EPPR=89.8692;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=184;QR=1410;RO=40;RPL=5;RPP=13.8677;RPPR=89.8692;RPR=0;RUN=1;SAF=5;SAP=13.8677;SAR=0;SRF=40;SRP=89.8692;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:12:12,0:12:417:0:0:0,-3.61236,-37.8602 0/1:13:8,5:8:288:5:184:-13.005,0,-22.3535 0/0:20:20,0:20:705:0:0:0,-6.0206,-63.7752 dDocent_Contig_629 17 . T C 670.082 . AB=0.291667;ABP=39.2015;AC=3;AF=0.5;AN=6;AO=28;CIGAR=1X2M;DP=96;DPB=96;DPRA=0;EPP=63.8115;EPPR=141.985;GTI=0;LEN=1;MEANALT=1.33333;MQM=60;MQMR=60;NS=3;NUMALT=2;ODDS=6.93889e-18;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=1106;QR=2521;RO=64;RPL=0;RPP=63.8115;RPPR=141.985;RPR=28;RUN=1;SAF=28;SAP=63.8115;SAR=0;SRF=64;SRP=141.985;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|1:62:37,4,21:37:1453:4,21:145,834:-57.542,-56.8494,-175.134,0,-107.685,-113.197 0|1:14:10,0,4:10:395:0,4:0,162:-10.7525,-13.7628,-46.2581,0,-32.8969,-31.6928 0|1:20:17,0,3:17:673:0,3:0,110:-4.23567,-9.35318,-64.7655,0,-55.783,-54.8799 dDocent_Contig_630 10 . T A 68.9516 . AB=0.151515;ABP=37.8197;AC=1;AF=0.166667;AN=6;AO=10;CIGAR=2X;DP=159;DPB=159;DPRA=0.945455;EPP=24.725;EPPR=326.56;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=367;QR=5877;RO=149;RPL=0;RPP=24.725;RPPR=326.56;RPR=10;RUN=1;SAF=10;SAP=24.725;SAR=0;SRF=149;SRP=326.56;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|0:71:66,5:66:2627:5:164:0,-6.29644,-221.484 0|1:33:28,5:28:1064:5:203:-8.71907,0,-86.1145 0|0:55:55,0:55:2186:0:0:0,-16.5566,-196.917 dDocent_Contig_632 9 . A G 48.9493 . AB=0.230769;ABP=11.1951;AC=1;AF=0.166667;AN=6;AO=9;CIGAR=1X;DP=144;DPB=144;DPRA=0;EPP=22.5536;EPPR=293.988;GTI=0;LEN=1;MEANALT=1.33333;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=338;QR=5139;RO=134;RPL=0;RPP=22.5536;RPPR=293.988;RPR=9;RUN=1;SAF=9;SAP=22.5536;SAR=0;SRF=134;SRP=293.988;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:90:84,5:84:3230:5:185:0,-10.1358,-273.841 0/1:13:10,3:10:387:3:114:-6.71883,0,-31.2741 0/0:41:40,1:40:1522:1:39:0,-8.44566,-133.355 dDocent_Contig_633 57 . C G 1203.5 . AB=0.392857;ABP=14.1779;AC=3;AF=0.5;AN=6;AO=44;CIGAR=1X;DP=112;DPB=112;DPRA=0;EPP=98.5551;EPPR=150.67;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=1762;QR=2695;RO=68;RPL=44;RPP=98.5551;RPPR=150.67;RPR=0;RUN=1;SAF=44;SAP=98.5551;SAR=0;SRF=68;SRP=150.67;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:53:23,30:23:911:30:1210:-93.2183,0,-66.341 0/1:23:16,7:16:636:7:278:-18.4667,0,-50.6503 0/1:36:29,7:29:1148:7:274:-14.1881,0,-92.7641 dDocent_Contig_635 22 . T C 107.733 . AB=0.166667;ABP=14.5915;AC=0;AF=0;AN=6;AO=2;CIGAR=2M1X2M1X;DP=51;DPB=49.8333;DPRA=0.615385;EPP=7.35324;EPPR=94.2121;GTI=0;LEN=1;MEANALT=2;MQM=60;MQMR=60;NS=3;NUMALT=2;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=81;QR=1666;RO=42;RPL=0;RPP=7.35324;RPPR=94.2121;RPR=2;RUN=1;SAF=2;SAP=7.35324;SAR=0;SRF=42;SRP=94.2121;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|0:24:22,0,2:22:882:0,2:0,74:0,-6.62266,-79.3197,-0.200703,-73.27,-72.6679 0|0:15:15,0,0:15:585:0,0:0,0:0,-4.51545,-52.99,-4.51545,-52.99,-52.99 0|0:12:5,2,5:5:199:2,5:81,174:-12.5963,-7.40607,-23.2148,0,-9.69974,-14.8757 dDocent_Contig_636 31 . C T 376.56 . AB=0.202128;ABP=75.4543;AC=3;AF=0.5;AN=6;AO=19;CIGAR=1X;DP=94;DPB=94;DPRA=0;EPP=44.2683;EPPR=165.871;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=768;QR=2997;RO=75;RPL=0;RPP=44.2683;RPPR=165.871;RPR=19;RUN=1;SAF=19;SAP=44.2683;SAR=0;SRF=75;SRP=165.871;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:39:31,8:31:1242:8:319:-17.3349,0,-100.307 0/1:11:10,1:10:410:1:41:-0.783237,0,-33.9492 0/1:44:34,10:34:1345:10:408:-23.8353,0,-108.061 dDocent_Contig_637 121 . T A 100.491 . AB=0.2;ABP=34.2795;AC=2;AF=0.333333;AN=6;AO=8;CIGAR=1X;DP=49;DPB=49;DPRA=2.22222;EPP=20.3821;EPPR=92.0407;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=277;QR=1374;RO=41;RPL=0;RPP=20.3821;RPPR=92.0407;RPR=8;RUN=1;SAF=0;SAP=20.3821;SAR=8;SRF=0;SRP=92.0407;SRR=41;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:25:21,4:21:715:4:139:-5.32694,0,-57.1422 0/1:15:11,4:11:372:4:138:-8.245,0,-29.2914 0/0:9:9,0:9:287:0:0:0,-2.70927,-26.1398 dDocent_Contig_638 24 . C A 856.219 . AB=0.333333;ABP=26.8965;AC=3;AF=0.5;AN=6;AO=33;CIGAR=1X;DP=99;DPB=99;DPRA=0;EPP=74.6689;EPPR=146.327;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=1332;QR=2625;RO=66;RPL=0;RPP=74.6689;RPPR=146.327;RPR=33;RUN=1;SAF=33;SAP=74.6689;SAR=0;SRF=66;SRP=146.327;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:60:44,16:44:1739:16:644:-40.2307,0,-138.661 0/1:23:12,11:12:488:11:443:-33.3011,0,-37.3476 0/1:16:10,6:10:398:6:245:-17.613,0,-31.3609 dDocent_Contig_642 7 . T G 492.218 . AB=0.185567;ABP=169.609;AC=3;AF=0.5;AN=6;AO=36;CIGAR=1X;DP=194;DPB=194;DPRA=0;EPP=81.1833;EPPR=343.931;GTI=0;LEN=1;MEANALT=1.33333;MQM=58.4444;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=0.555556;PAIREDR=0.980892;PAO=0;PQA=0;PQR=0;PRO=0;QA=1252;QR=5967;RO=157;RPL=0;RPP=81.1833;RPPR=343.931;RPR=36;RUN=1;SAF=36;SAP=81.1833;SAR=0;SRF=157;SRP=343.931;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:126:105,20:105:3994:20:702:-25.4831,0,-321.551 0/1:23:15,8:15:577:8:271:-17.3661,0,-45.3485 0/1:45:37,8:37:1396:8:279:-11.8954,0,-112.373 dDocent_Contig_644 9 . A G 519.217 . AB=0.141414;ABP=224.15;AC=1;AF=0.166667;AN=6;AO=28;CIGAR=1X2M2X;DP=198;DPB=198;DPRA=0;EPP=63.8115;EPPR=328.731;GTI=0;LEN=1;MEANALT=2;MQM=60;MQMR=60;NS=3;NUMALT=2;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=1082;QR=5846;RO=150;RPL=0;RPP=63.8115;RPPR=328.731;RPR=28;RUN=1;SAF=28;SAP=63.8115;SAR=0;SRF=150;SRP=328.731;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|1:118:88,21,9:88:3438:21,9:808,332:-39.8559,0,-276.335,-39.2081,-255.515,-319.14 0|0:24:16,3,5:16:610:3,5:118,205:-12.1142,-7.23023,-56.3409,0,-40.3168,-48.5202 0|0:56:46,4,6:46:1798:4,6:156,235:-5.47433,-6.49899,-153.113,0,-134.996,-146.013 dDocent_Contig_645 23 . T A 280.213 . AB=0.172043;ABP=89.8925;AC=1;AF=0.166667;AN=6;AO=16;CIGAR=1X;DP=363;DPB=363;DPRA=0.688889;EPP=37.7539;EPPR=754.34;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=0.99711;PAO=0;PQA=0;PQR=0;PRO=0;QA=639;QR=13759;RO=346;RPL=0;RPP=37.7539;RPPR=754.34;RPR=16;RUN=1;SAF=16;SAP=37.7539;SAR=0;SRF=346;SRP=754.34;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:223:222,0:222:8856:0:0:0,-66.8287,-796.165 0/0:47:47,0:47:1887:0:0:0,-14.1484,-170.028 0/1:93:77,16:77:3016:16:639:-29.8452,0,-243.522 dDocent_Contig_646 10 . T A 37.2411 . AB=0.102273;ABP=123.922;AC=1;AF=0.166667;AN=6;AO=66;CIGAR=1X;DP=1173;DPB=1173;DPRA=0;EPP=146.327;EPPR=2404.66;GTI=0;LEN=1;MEANALT=1.33333;MQM=60;MQMR=59.7477;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=0.986438;PAO=0;PQA=0;PQR=0;PRO=0;QA=2635;QR=44547;RO=1106;RPL=0;RPP=146.327;RPPR=2404.66;RPR=66;RUN=1;SAF=66;SAP=146.327;SAR=0;SRF=1106;SRP=2404.66;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:706:672,34:672:27111:34:1370:0,-88.9718,-2313.12 0/1:88:79,9:79:3168:9:352:-5.54794,0,-258.375 0/0:379:355,23:355:14268:23:913:0,-31.4348,-1200.4 dDocent_Contig_647 85 . T C 135.95 . AB=0.196429;ABP=47.8357;AC=2;AF=0.333333;AN=6;AO=11;CIGAR=1X;DP=67;DPB=67;DPRA=2.54545;EPP=26.8965;EPPR=124.613;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=369;QR=1780;RO=56;RPL=11;RPP=26.8965;RPPR=124.613;RPR=0;RUN=1;SAF=11;SAP=26.8965;SAR=0;SRF=56;SRP=124.613;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:41:32,9:32:1034:9:299:-14.8904,0,-81.0175 0/0:11:11,0:11:341:0:0:0,-3.31133,-30.989 0/1:15:13,2:13:405:2:70:-2.13195,0,-32.2372 dDocent_Contig_648 28 . G T 197.113 . AB=0.166667;ABP=78.288;AC=3;AF=0.5;AN=6;AO=13;CIGAR=1X;DP=78;DPB=78;DPRA=0;EPP=31.2394;EPPR=144.156;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=522;QR=2623;RO=65;RPL=0;RPP=31.2394;RPPR=144.156;RPR=13;RUN=1;SAF=13;SAP=31.2394;SAR=0;SRF=65;SRP=144.156;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:39:33,6:33:1331:6:239:-10.143,0,-108.308 0/1:21:19,2:19:768:2:82:-1.45805,0,-63.1178 0/1:18:13,5:13:524:5:201:-13.0515,0,-42.0878 dDocent_Contig_649 79 . G T 684.329 . AB=0.345238;ABP=20.4855;AC=3;AF=0.5;AN=6;AO=29;CIGAR=1X;DP=84;DPB=84;DPRA=0;EPP=65.983;EPPR=122.441;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=1091;QR=2017;RO=55;RPL=29;RPP=65.983;RPPR=122.441;RPR=0;RUN=1;SAF=29;SAP=65.983;SAR=0;SRF=55;SRP=122.441;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:54:34,20:34:1269:20:768:-53.1923,0,-98.2364 0/1:11:9,2:9:318:2:78:-4.09214,0,-25.6445 0/1:19:12,7:12:430:7:245:-16.6702,0,-33.318 dDocent_Contig_651 11 . T A 66.1104 . AB=0.15625;ABP=35.8538;AC=1;AF=0.166667;AN=6;AO=5;CIGAR=1M1D3M1X1M1X;DP=52;DPB=51.375;DPRA=3.2;EPP=13.8677;EPPR=105.07;GTI=0;LEN=1;MEANALT=1;MQM=53;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=196;QR=1796;RO=47;RPL=0;RPP=13.8677;RPPR=105.07;RPR=5;RUN=1;SAF=5;SAP=13.8677;SAR=0;SRF=47;SRP=105.07;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|1:32:27,5:27:1030:5:196:-8.1339,0,-83.3751 0|0:6:6,0:6:229:0:0:0,-1.80618,-20.976 0|0:14:14,0:14:537:0:0:0,-4.21442,-48.6749 dDocent_Contig_652 82 . T G 241.024 . AB=0.202381;ABP=67.6375;AC=3;AF=0.5;AN=6;AO=17;CIGAR=1X;DP=84;DPB=84;DPRA=0;EPP=39.9253;EPPR=148.499;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=582;QR=2287;RO=67;RPL=17;RPP=39.9253;RPPR=148.499;RPR=0;RUN=1;SAF=17;SAP=39.9253;SAR=0;SRF=67;SRP=148.499;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:41:31,10:31:1042:10:341:-18.6781,0,-81.74 0/1:33:27,6:27:931:6:206:-8.94273,0,-74.1702 0/1:10:9,1:9:314:1:35:-0.488329,0,-25.5876 dDocent_Contig_653 87 . A T 52.3889 . AB=0.166667;ABP=31.9633;AC=1;AF=0.166667;AN=6;AO=11;CIGAR=1X;DP=160;DPB=160;DPRA=4.20588;EPP=26.8965;EPPR=326.56;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=390;QR=5191;RO=149;RPL=11;RPP=26.8965;RPPR=326.56;RPR=0;RUN=1;SAF=11;SAP=26.8965;SAR=0;SRF=149;SRP=326.56;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:113:107,6:107:3754:6:215:0,-14.3172,-318.365 0/0:17:17,0:17:597:0:0:0,-5.11751,-54.058 0/1:30:25,5:25:840:5:175:-7.06279,0,-66.878 dDocent_Contig_655 167 . C T 149.256 . AB=0.117904;ABP=293.409;AC=2;AF=0.333333;AN=6;AO=29;CIGAR=1X;DP=282;DPB=282;DPRA=0;EPP=65.983;EPPR=552.393;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=1037;QR=9576;RO=253;RPL=29;RPP=65.983;RPPR=552.393;RPR=0;RUN=1;SAF=0;SAP=65.983;SAR=29;SRF=0;SRP=552.393;SRR=253;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:166:149,17:149:5652:17:652:-9.04021,0,-458.62 0/0:53:51,2:51:1917:2:73:0,-9.02349,-165.827 0/1:63:53,10:53:2007:10:312:-9.40831,0,-161.874 dDocent_Contig_656 39 . A G 933.948 . AB=0.291045;ABP=53.8292;AC=3;AF=0.5;AN=6;AO=39;CIGAR=1X;DP=134;DPB=134;DPRA=0;EPP=87.6977;EPPR=207.129;GTI=0;LEN=1;MEANALT=1.33333;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=1537;QR=3708;RO=94;RPL=0;RPP=87.6977;RPPR=207.129;RPR=39;RUN=1;SAF=39;SAP=87.6977;SAR=0;SRF=94;SRP=207.129;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:69:61,8:61:2420:8:315:-7.94304,0,-197.187 0/1:30:14,15:14:550:15:584:-43.7581,0,-40.7023 0/1:35:19,16:19:738:16:638:-47.2165,0,-56.1944 dDocent_Contig_657 35 . A T 2848.4 . AB=0.62585;ABP=23.2331;AC=3;AF=0.5;AN=6;AO=92;CIGAR=1X;DP=147;DPB=147;DPRA=0;EPP=202.786;EPPR=122.441;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=0;PAIREDR=0.945455;PAO=0;PQA=0;PQR=0;PRO=0;QA=3709;QR=2189;RO=55;RPL=0;RPP=202.786;RPPR=122.441;RPR=92;RUN=1;SAF=92;SAP=202.786;SAR=0;SRF=55;SRP=122.441;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:73:27,46:27:1082:46:1840:-143.831,0,-75.6906 0/1:27:14,13:14:558:13:528:-39.7391,0,-42.4349 0/1:47:14,33:14:549:33:1341:-106.793,0,-35.5995 dDocent_Contig_658 28 . C A 1311.6 . AB=0.179551;ABP=360.675;AC=3;AF=0.5;AN=6;AO=72;CIGAR=1X;DP=401;DPB=401;DPRA=0;EPP=159.356;EPPR=717.425;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=0.87538;PAO=0;PQA=0;PQR=0;PRO=0;QA=2850;QR=13066;RO=329;RPL=0;RPP=159.356;RPPR=717.425;RPR=72;RUN=1;SAF=72;SAP=159.356;SAR=0;SRF=329;SRP=717.425;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:245:197,48:197:7860:48:1902:-97.632,0,-633.218 0/1:29:18,11:18:700:11:433:-30.593,0,-54.5964 0/1:127:114,13:114:4506:13:515:-8.45806,0,-367.243 dDocent_Contig_659 16 . A G 84.0677 . AB=0.222222;ABP=15.074;AC=1;AF=0.166667;AN=6;AO=4;CIGAR=1X2M;DP=49;DPB=49;DPRA=1.16129;EPP=11.6962;EPPR=94.2121;GTI=0;LEN=1;MEANALT=2;MQM=60;MQMR=60;NS=3;NUMALT=2;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=164;QR=1639;RO=42;RPL=0;RPP=11.6962;RPPR=94.2121;RPR=4;RUN=1;SAF=4;SAP=11.6962;SAR=0;SRF=42;SRP=94.2121;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|0:20:20,0,0:20:781:0,0:0,0:0,-6.0206,-70.6095,-6.0206,-70.6095,-70.6095 0|0:11:11,0,0:11:436:0,0:0,0:0,-3.31133,-39.5937,-3.31133,-39.5937,-39.5937 0|1:18:11,3,4:11:422:3,4:120,164:-10.2306,-3.66118,-37.3708,0,-24.7306,-33.415 dDocent_Contig_660 12 . A C 216.828 . AB=0.13913;ABP=133.091;AC=2;AF=0.333333;AN=6;AO=18;CIGAR=1X;DP=163;DPB=163;DPRA=0;EPP=42.0968;EPPR=317.874;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=724;QR=5755;RO=145;RPL=0;RPP=42.0968;RPPR=317.874;RPR=18;RUN=1;SAF=18;SAP=42.0968;SAR=0;SRF=145;SRP=317.874;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:93:79,14:79:3116:14:565:-23.1971,0,-252.525 0/1:22:20,2:20:783:2:78:-0.780117,0,-64.1541 0/0:48:46,2:46:1856:2:81:0,-6.76371,-159.559 dDocent_Contig_661 38 . T A 1405.94 . AB=0.385185;ABP=18.468;AC=3;AF=0.5;AN=6;AO=52;CIGAR=2X;DP=135;DPB=135;DPRA=0;EPP=115.927;EPPR=183.243;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=6.93889e-18;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=2064;QR=3241;RO=83;RPL=0;RPP=115.927;RPPR=183.243;RPR=52;RUN=1;SAF=52;SAP=115.927;SAR=0;SRF=83;SRP=183.243;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|1:64:36,28:36:1414:28:1110:-80.9264,0,-108.254 0|1:34:19,15:19:715:15:595:-43.6548,0,-54.4291 0|1:37:28,9:28:1112:9:359:-21.5354,0,-89.2328 dDocent_Contig_662 107 . N T 128.015 . AB=0;ABP=0;AC=4;AF=1;AN=4;AO=5;CIGAR=1X;DP=5;DPB=5;DPRA=0;EPP=13.8677;EPPR=0;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=0;NS=2;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=133;QR=0;RO=0;RPL=0;RPP=13.8677;RPPR=0;RPR=5;RUN=1;SAF=0;SAP=13.8677;SAR=5;SRF=0;SRP=0;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 1/1:3:0,3:0:0:3:79:-7.37103,-0.90309,0 ./.:.:.:.:.:.:.:. 1/1:2:0,2:0:0:2:54:-5.12867,-0.60206,0 dDocent_Contig_663 39 . G A 238.351 . AB=0.130719;ABP=184.236;AC=3;AF=0.5;AN=6;AO=20;CIGAR=1X;DP=153;DPB=153;DPRA=0;EPP=46.4397;EPPR=291.816;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=806;QR=5350;RO=133;RPL=0;RPP=46.4397;RPPR=291.816;RPR=20;RUN=1;SAF=20;SAP=46.4397;SAR=0;SRF=133;SRP=291.816;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:79:66,13:66:2657:13:529:-24.1755,0,-215.466 0/1:15:13,2:13:514:2:81:-3.17028,0,-42.0856 0/1:59:54,5:54:2179:5:196:-0.252462,0,-178.517 dDocent_Contig_664 50 . A T 863.871 . AB=0.176471;ABP=250.303;AC=3;AF=0.5;AN=6;AO=48;CIGAR=1X;DP=272;DPB=272;DPRA=0;EPP=107.241;EPPR=489.42;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=1920;QR=8792;RO=224;RPL=48;RPP=107.241;RPPR=489.42;RPR=0;RUN=1;SAF=48;SAP=107.241;SAR=0;SRF=224;SRP=489.42;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:178:146,32:146:5746:32:1280:-61.8763,0,-463.373 0/1:35:31,4:31:1214:4:157:-3.97224,0,-99.0055 0/1:59:47,12:47:1832:12:483:-26.0599,0,-147.33 dDocent_Contig_665 17 . A C 14885.3 . AB=0.248085;ABP=1298.37;AC=3;AF=0.5;AN=6;AO=583;CIGAR=1X2M1X;DP=2350;DPB=2350.75;DPRA=0;EPP=1268.98;EPPR=2819.41;GTI=0;LEN=1;MEANALT=14.6667;MQM=59.6003;MQMR=60;NS=3;NUMALT=2;ODDS=4.44089e-16;PAIRED=0.955403;PAIREDR=0.986893;PAO=0;PQA=0;PQR=0;PRO=0;QA=22928;QR=51347;RO=1297;RPL=0;RPP=1268.98;RPPR=2819.41;RPR=583;RUN=1;SAF=583;SAP=1268.98;SAR=0;SRF=1297;SRP=2819.41;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|1:686:401,91,137:401:15886:91,137:3599,5365:-320.289,-144.889,-1424.99,0,-1011.38,-1266.25 0|1:997:537,119,281:537:21252:119,281:4687,11041:-745.376,-521.609,-2234.79,0,-1363.58,-1664.41 0|1:667:359,91,165:359:14209:91,165:3613,6522:-428.386,-239.829,-1381.82,0,-872.762,-1119.72 dDocent_Contig_666 47 . G A 92.9253 . AB=0.227273;ABP=17.2236;AC=1;AF=0.166667;AN=6;AO=8;CIGAR=2X;DP=77;DPB=77;DPRA=2.70833;EPP=20.3821;EPPR=152.842;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=3.46945e-18;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=303;QR=2683;RO=69;RPL=0;RPP=20.3821;RPPR=152.842;RPR=8;RUN=1;SAF=8;SAP=20.3821;SAR=0;SRF=69;SRP=152.842;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|0:43:40,3:40:1549:3:110:0,-2.68348,-129.395 0|0:12:12,0:12:477:0:0:0,-3.61236,-43.2819 0|1:22:17,5:17:657:5:193:-11.1164,0,-52.8362 dDocent_Contig_667 10 . G C 373.491 . AB=0.177966;ABP=109.302;AC=2;AF=0.333333;AN=6;AO=21;CIGAR=1X;DP=139;DPB=139;DPRA=2.80952;EPP=48.6112;EPPR=259.244;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=841;QR=4717;RO=118;RPL=0;RPP=48.6112;RPPR=259.244;RPR=21;RUN=1;SAF=21;SAP=48.6112;SAR=0;SRF=118;SRP=259.244;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:80:71,9:71:2832:9:350:-7.77021,0,-230.894 0/0:21:21,0:21:845:0:0:0,-6.32163,-76.363 0/1:38:26,12:26:1040:12:491:-33.1018,0,-82.4512 dDocent_Contig_668 104 . G T 113.841 . AB=0.416667;ABP=3.73412;AC=1;AF=0.166667;AN=6;AO=5;CIGAR=1X;DP=30;DPB=30;DPRA=1.33333;EPP=13.8677;EPPR=57.2971;GTI=0;LEN=1;MEANALT=1;MQM=46.8;MQMR=40.6;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=0.84;PAO=0;PQA=0;PQR=0;PRO=0;QA=185;QR=909;RO=25;RPL=0;RPP=13.8677;RPPR=57.2971;RPR=5;RUN=1;SAF=0;SAP=13.8677;SAR=5;SRF=0;SRP=57.2971;SRR=25;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:10:10,0:10:370:0:0:0,-3.0103,-30.6007 0/0:8:8,0:8:283:0:0:0,-2.40824,-18.2633 0/1:12:7,5:7:256:5:185:-13.208,0,-19.5469 dDocent_Contig_669 16 . C T 80.2554 . AB=0.235294;ABP=13.3567;AC=1;AF=0.166667;AN=6;AO=4;CIGAR=1X;DP=48;DPB=48;DPRA=1.09677;EPP=11.6962;EPPR=98.5551;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=162;QR=1765;RO=44;RPL=0;RPP=11.6962;RPPR=98.5551;RPR=4;RUN=1;SAF=4;SAP=11.6962;SAR=0;SRF=44;SRP=98.5551;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:19:19,0:19:754:0:0:0,-5.71957,-68.1831 0/1:17:13,4:13:528:4:162:-9.84945,0,-42.749 0/0:12:12,0:12:483:0:0:0,-3.61236,-43.8205 dDocent_Contig_670 27 . G A 261.822 . AB=0.158879;ABP=111.158;AC=1;AF=0.166667;AN=6;AO=17;CIGAR=1X;DP=161;DPB=161;DPRA=3.96296;EPP=39.9253;EPPR=315.702;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=662;QR=5390;RO=144;RPL=0;RPP=39.9253;RPPR=315.702;RPR=17;RUN=1;SAF=17;SAP=39.9253;SAR=0;SRF=144;SRP=315.702;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:107:90,17:90:3356:17:662:-27.705,0,-269.969 0/0:13:13,0:13:501:0:0:0,-3.91339,-45.4381 0/0:41:41,0:41:1533:0:0:0,-12.3422,-138.237 dDocent_Contig_671 10 . G T 201.673 . AB=0.121387;ABP=218.413;AC=2;AF=0.333333;AN=6;AO=25;CIGAR=1X;DP=239;DPB=239;DPRA=0;EPP=57.2971;EPPR=467.705;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=994;QR=8563;RO=214;RPL=0;RPP=57.2971;RPPR=467.705;RPR=25;RUN=1;SAF=25;SAP=57.2971;SAR=0;SRF=214;SRP=467.705;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:159:141,18:141:5637:18:715:-16.8092,0,-459.273 0/1:14:11,3:11:424:3:119:-6.88097,0,-34.2911 0/0:66:62,4:62:2502:4:160:0,-5.08455,-210.532 dDocent_Contig_672 79 . G T 1082.74 . AB=0.233333;ABP=151.249;AC=3;AF=0.5;AN=6;AO=56;CIGAR=1X;DP=240;DPB=240;DPRA=0;EPP=124.613;EPPR=402.561;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=2055;QR=6650;RO=184;RPL=56;RPP=124.613;RPPR=402.561;RPR=0;RUN=1;SAF=56;SAP=124.613;SAR=0;SRF=184;SRP=402.561;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:148:106,42:106:3819:42:1544:-94.696,0,-299.327 0/1:29:26,3:26:942:3:117:-2.18051,0,-76.354 0/1:63:52,11:52:1889:11:394:-16.8338,0,-151.315 dDocent_Contig_673 13 . G C 5336.61 . AB=0.518841;ABP=4.07401;AC=3;AF=0.5;AN=6;AO=179;CIGAR=1X;DP=345;DPB=345;DPRA=0;EPP=391.704;EPPR=363.475;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=7140;QR=6664;RO=166;RPL=0;RPP=391.704;RPPR=363.475;RPR=179;RUN=1;SAF=179;SAP=391.704;SAR=0;SRF=166;SRP=363.475;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:154:81,73:81:3242:73:2899:-214.642,0,-245.471 0/1:94:45,49:45:1811:49:1966:-148.833,0,-134.902 0/1:97:40,57:40:1611:57:2275:-175.709,0,-116.018 dDocent_Contig_675 165 . G C 129.829 . AB=0.181818;ABP=41.702;AC=2;AF=0.333333;AN=6;AO=8;CIGAR=1X;DP=52;DPB=52;DPRA=2.75;EPP=20.3821;EPPR=74.2741;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=3.46945e-18;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=322;QR=1725;RO=44;RPL=8;RPP=20.3821;RPPR=74.2741;RPR=0;RUN=1;SAF=0;SAP=20.3821;SAR=8;SRF=0;SRP=98.5551;SRR=44;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:33:28,5:28:1081:5:201:-8.5369,0,-87.6341 0/1:11:8,3:8:317:3:121:-7.96887,0,-25.5835 0/0:8:8,0:8:327:0:0:0,-2.40824,-29.8001 dDocent_Contig_676 231 . T C 6036.53 . AB=0.230825;ABP=872.756;AC=3;AF=0.5;AN=6;AO=319;CIGAR=1X;DP=1382;DPB=1382;DPRA=0;EPP=695.71;EPPR=2285.26;GTI=0;LEN=1;MEANALT=1.33333;MQM=57.1003;MQMR=50.491;NS=3;NUMALT=1;ODDS=0;PAIRED=0.877743;PAIREDR=0.640227;PAO=0;PQA=0;PQR=0;PRO=0;QA=11597;QR=38365;RO=1059;RPL=319;RPP=695.71;RPPR=2302.6;RPR=0;RUN=1;SAF=0;SAP=695.71;SAR=319;SRF=2;SRP=2285.26;SRR=1057;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:648:487,157:487:17650:157:5706:-307.14,0,-1264.22 0/1:274:219,55:219:7923:55:2001:-91.1274,0,-561.583 0/1:460:353,107:353:12792:107:3890:-210.909,0,-894.739 dDocent_Contig_678 58 . A G 70.146 . AB=0.156863;ABP=55.1682;AC=2;AF=0.333333;AN=6;AO=13;CIGAR=1X;DP=146;DPB=146;DPRA=0;EPP=31.2394;EPPR=291.816;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=0.923077;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=433;QR=4531;RO=133;RPL=13;RPP=31.2394;RPPR=291.816;RPR=0;RUN=1;SAF=13;SAP=31.2394;SAR=0;SRF=133;SRP=291.816;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:95:90,5:90:3079:5:153:0,-14.525,-263.279 0/1:15:12,3:12:412:3:105:-5.28071,0,-32.8941 0/1:36:31,5:31:1040:5:175:-5.25662,0,-83.0666 dDocent_Contig_679 9 . A T 169.061 . AB=0.134328;ABP=80.8268;AC=1;AF=0.166667;AN=6;AO=10;CIGAR=2X;DP=100;DPB=100;DPRA=0;EPP=24.725;EPPR=178.9;GTI=0;LEN=1;MEANALT=1.66667;MQM=60;MQMR=60;NS=3;NUMALT=2;ODDS=6.93889e-18;PAIRED=1;PAIREDR=0.901235;PAO=0;PQA=0;PQR=0;PRO=0;QA=384;QR=3089;RO=81;RPL=0;RPP=24.725;RPPR=178.9;RPR=10;RUN=1;SAF=10;SAP=24.725;SAR=0;SRF=81;SRP=178.9;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|0:33:32,1,0:32:1222:1,0:39,0:0,-6.03743,-106.378,-9.63296,-106.679,-109.885 0|0:41:29,5,7:29:1104:5,7:190,273:-13.7171,-6.86865,-95.9113,0,-74.9735,-88.4486 0|1:26:20,4,2:20:763:4,2:155,78:-6.71189,0,-61.3829,-6.31991,-56.1745,-68.3075 dDocent_Contig_680 55 . C T 132.913 . AB=0.12037;ABP=138.205;AC=1;AF=0.166667;AN=6;AO=15;CIGAR=1X;DP=183;DPB=183;DPRA=4.075;EPP=35.5824;EPPR=367.818;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=604;QR=6476;RO=168;RPL=15;RPP=35.5824;RPPR=367.818;RPR=0;RUN=1;SAF=15;SAP=35.5824;SAR=0;SRF=168;SRP=367.818;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:108:95,13:95:3660:13:522:-14.8142,0,-296.939 0/0:20:20,0:20:776:0:0:0,-6.0206,-70.1582 0/0:55:53,2:53:2040:2:82:0,-8.77697,-176.027 dDocent_Contig_681 17 . T A 39.0264 . AB=0.129032;ABP=40.0654;AC=1;AF=0.166667;AN=6;AO=4;CIGAR=1X;DP=131;DPB=131;DPRA=0.62;EPP=11.6962;EPPR=278.787;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=0.25;PAIREDR=0.929134;PAO=0;PQA=0;PQR=0;PRO=0;QA=163;QR=5132;RO=127;RPL=0;RPP=11.6962;RPPR=278.787;RPR=4;RUN=1;SAF=4;SAP=11.6962;SAR=0;SRF=127;SRP=278.787;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:77:77,0:77:3111:0:0:0,-23.1793,-280.056 0/0:23:23,0:23:929:0:0:0,-6.92369,-83.9128 0/1:31:27,4:27:1092:4:163:-5.7265,0,-89.2325 dDocent_Contig_682 98 . N T 66.4841 . AB=0;ABP=0;AC=2;AF=1;AN=2;AO=2;CIGAR=1X;DP=2;DPB=2;DPRA=0;EPP=7.35324;EPPR=0;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=0;NS=1;NUMALT=1;ODDS=5.99146;PAIRED=1;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=70;QR=0;RO=0;RPL=2;RPP=7.35324;RPPR=0;RPR=0;RUN=1;SAF=2;SAP=7.35324;SAR=0;SRF=0;SRP=0;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 1/1:2:0,2:0:0:2:70:-6.64733,-0.60206,0 ./.:.:.:.:.:.:.:. ./.:.:.:.:.:.:.:. dDocent_Contig_683 14 . C T 982.679 . AB=0.196787;ABP=201.853;AC=3;AF=0.5;AN=6;AO=49;CIGAR=1X;DP=249;DPB=249;DPRA=0;EPP=109.412;EPPR=437.305;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=1975;QR=8056;RO=200;RPL=0;RPP=109.412;RPPR=437.305;RPR=49;RUN=1;SAF=49;SAP=109.412;SAR=0;SRF=200;SRP=437.305;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:168:137,31:137:5511:31:1245:-61.7456,0,-445.223 0/1:18:13,5:13:524:5:202:-13.143,0,-42.0885 0/1:63:50,13:50:2021:13:528:-28.9022,0,-163.109 dDocent_Contig_685 68 . G A 3160.63 . AB=0.768707;ABP=95.2019;AC=3;AF=0.5;AN=6;AO=113;CIGAR=1X;DP=147;DPB=147;DPRA=0;EPP=248.387;EPPR=76.8404;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=6.93889e-18;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=4055;QR=1175;RO=34;RPL=113;RPP=248.387;RPPR=76.8404;RPR=0;RUN=1;SAF=113;SAP=248.387;SAR=0;SRF=34;SRP=76.8404;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:86:17,69:17:579:69:2484:-197.915,0,-26.5381 0/1:19:8,11:8:288:11:391:-29.8089,0,-20.5474 0/1:42:9,33:9:308:33:1180:-93.8627,0,-15.4067 dDocent_Contig_688 12 . C A 38.2221 . AB=0.131579;ABP=47.8112;AC=2;AF=0.333333;AN=6;AO=7;CIGAR=1X;DP=82;DPB=82;DPRA=0;EPP=5.80219;EPPR=165.871;GTI=0;LEN=1;MEANALT=1;MQM=54;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=0.714286;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=280;QR=3005;RO=75;RPL=0;RPP=18.2106;RPPR=165.871;RPR=7;RUN=1;SAF=5;SAP=5.80219;SAR=2;SRF=75;SRP=165.871;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:44:42,2:42:1688:2:80:0,-6.31769,-145.211 0/1:12:10,2:10:397:2:79:-3.88488,0,-32.4764 0/1:26:23,3:23:920:3:121:-3.45321,0,-75.2801 dDocent_Contig_689 40 . G A 657.58 . AB=0.223022;ABP=95.6338;AC=3;AF=0.5;AN=6;AO=31;CIGAR=1X;DP=139;DPB=139;DPRA=0;EPP=70.3259;EPPR=237.529;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=6.93889e-18;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=1245;QR=4328;RO=108;RPL=0;RPP=70.3259;RPPR=237.529;RPR=31;RUN=1;SAF=31;SAP=70.3259;SAR=0;SRF=108;SRP=237.529;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:68:51,17:51:2027:17:673:-40.4244,0,-162.149 0/1:35:28,7:28:1132:7:286:-15.5788,0,-91.6246 0/1:36:29,7:29:1169:7:286:-15.2777,0,-94.648 dDocent_Contig_690 8 . T G 847.947 . AB=0.204545;ABP=169.819;AC=3;AF=0.5;AN=6;AO=45;CIGAR=1X;DP=220;DPB=220;DPRA=0;EPP=100.727;EPPR=383.018;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=1.38778e-17;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=1728;QR=6716;RO=175;RPL=0;RPP=100.727;RPPR=383.018;RPR=45;RUN=1;SAF=45;SAP=100.727;SAR=0;SRF=175;SRP=383.018;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:98:81,17:81:3114:17:656:-29.8762,0,-250.913 0/1:56:47,9:47:1801:9:345:-14.5505,0,-145.483 0/1:66:47,19:47:1801:19:727:-45.8908,0,-142.471 dDocent_Contig_692 43 . T C 1501.77 . AB=0.297561;ABP=75.9824;AC=3;AF=0.5;AN=6;AO=61;CIGAR=1X;DP=205;DPB=205;DPRA=0;EPP=135.47;EPPR=315.702;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=2405;QR=5627;RO=144;RPL=0;RPP=135.47;RPPR=315.702;RPR=61;RUN=1;SAF=61;SAP=135.47;SAR=0;SRF=144;SRP=315.702;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:134:94,40:94:3687:40:1565:-100.756,0,-291.539 0/1:26:21,5:21:815:5:200:-10.5528,0,-65.8373 0/1:45:29,16:29:1125:16:640:-44.3902,0,-87.9918 dDocent_Contig_693 84 . T C 308.487 . AB=0.40625;ABP=5.45321;AC=2;AF=0.333333;AN=6;AO=13;CIGAR=1X;DP=57;DPB=57;DPRA=0.64;EPP=31.2394;EPPR=98.5551;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=0.954545;PAO=0;PQA=0;PQR=0;PRO=0;QA=481;QR=1577;RO=44;RPL=13;RPP=31.2394;RPPR=98.5551;RPR=0;RUN=1;SAF=13;SAP=31.2394;SAR=0;SRF=44;SRP=98.5551;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:24:13,11:13:481:11:407:-29.7536,0,-36.4097 0/1:8:6,2:6:222:2:74:-4.61764,0,-17.9287 0/0:25:25,0:25:874:0:0:0,-7.52575,-78.9768 dDocent_Contig_694 15 . T C 205.365 . AB=0.178082;ABP=68.7196;AC=3;AF=0.5;AN=6;AO=13;CIGAR=1X;DP=73;DPB=73;DPRA=0;EPP=31.2394;EPPR=133.299;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=518;QR=2408;RO=60;RPL=0;RPP=31.2394;RPPR=133.299;RPR=13;RUN=1;SAF=13;SAP=31.2394;SAR=0;SRF=60;SRP=133.299;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:39:34,5:34:1363:5:198:-6.45484,0,-111.185 0/1:18:16,2:16:640:2:76:-1.79572,0,-52.5155 0/1:16:10,6:10:405:6:244:-17.5223,0,-31.9936 dDocent_Contig_695 127 . G T 364.77 . AB=0.358491;ABP=12.2288;AC=3;AF=0.5;AN=6;AO=19;CIGAR=1X;DP=53;DPB=53;DPRA=0;EPP=44.2683;EPPR=76.8404;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=633;QR=1165;RO=34;RPL=0;RPP=44.2683;RPPR=76.8404;RPR=19;RUN=1;SAF=0;SAP=44.2683;SAR=19;SRF=0;SRP=76.8404;SRR=34;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:25:13,12:13:453:12:398:-28.6109,0,-33.577 0/1:14:10,4:10:338:4:127:-7.52826,0,-26.5338 0/1:14:11,3:11:374:3:108:-5.86075,0,-29.7739 dDocent_Contig_697 7 . T C 209.594 . AB=0.157895;ABP=22.325;AC=2;AF=0.333333;AN=6;AO=3;CIGAR=2X3M1D1M1X2M1I7M3D7M1X3M;DP=67;DPB=63.9032;DPRA=0;EPP=9.52472;EPPR=70.3259;GTI=0;LEN=1;MEANALT=4;MQM=49;MQMR=60;NS=3;NUMALT=5;ODDS=0;PAIRED=0;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=114;QR=1223;RO=31;RPL=0;RPP=9.52472;RPPR=70.3259;RPR=3;RUN=1;SAF=3;SAP=9.52472;SAR=0;SRF=31;SRP=70.3259;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|0:30:7,6,6,0,0,6:7:275:6,6,0,0,6:214,229,0,0,243:-17.9443,-2.8965,-23.7155,-2.30402,-7.77795,-23.1241,-20.0516,-25.5217,-24.9303,-42.6764,-20.0516,-25.5217,-24.9303,-42.6764,-42.6764,0,-5.47476,-4.88249,-22.6307,-22.6307,-20.8245 0|1:18:13,1,1,2,0,0:13:516:1,1,2,0,0:40,40,75,0,0:-2.19035,-2.80365,-44.9987,-3.0345,-42.2303,-45.2248,0,-39.194,-39.4202,-41.8873,-6.10374,-45.2997,-45.5258,-42.4894,-48.5953,-6.10374,-45.2997,-45.5258,-42.4894,-48.5953,-48.5953 0|1:19:11,0,1,3,3,0:11:432:0,1,3,3,0:0,39,117,114,0:-6.20158,-9.51291,-45.0508,-6.49692,-42.034,-41.733,0,-35.5408,-32.5243,-34.6377,-0.263993,-35.8009,-32.7845,-26.2915,-34.8978,-9.51291,-45.0508,-42.034,-35.5408,-35.8009,-45.0508 dDocent_Contig_698 83 . G T 199.282 . AB=0.186047;ABP=76.6384;AC=3;AF=0.5;AN=6;AO=16;CIGAR=1X;DP=86;DPB=86;DPRA=0;EPP=37.7539;EPPR=155.013;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=559;QR=2577;RO=70;RPL=16;RPP=37.7539;RPPR=155.013;RPR=0;RUN=1;SAF=16;SAP=37.7539;SAR=0;SRF=70;SRP=155.013;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:40:35,5:35:1304:5:174:-3.96075,0,-105.6 0/1:23:17,6:17:635:6:210:-12.3188,0,-50.562 0/1:23:18,5:18:638:5:175:-9.17,0,-50.8203 dDocent_Contig_699 7 . T C 9116.33 . AB=0.643606;ABP=88.4534;AC=3;AF=0.5;AN=6;AO=307;CIGAR=1X;DP=477;DPB=477;DPRA=0;EPP=669.652;EPPR=369.989;GTI=0;LEN=1;MEANALT=1.33333;MQM=59.8241;MQMR=60;NS=3;NUMALT=1;ODDS=2.77556e-17;PAIRED=0.960912;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=11782;QR=6364;RO=169;RPL=0;RPP=669.652;RPPR=369.989;RPR=307;RUN=1;SAF=307;SAP=669.652;SAR=0;SRF=169;SRP=369.989;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:259:76,182:76:2889:182:7014:-553.248,0,-182.418 0/1:64:28,36:28:1045:36:1383:-105.487,0,-75.0923 0/1:154:65,89:65:2430:89:3385:-258.42,0,-172.55 dDocent_Contig_700 63 . T A 12175.9 . AB=0.832258;ABP=448.891;AC=3;AF=0.5;AN=6;AO=387;CIGAR=1X;DP=465;DPB=465;DPRA=0;EPP=843.37;EPPR=172.385;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=15149;QR=3123;RO=78;RPL=387;RPP=843.37;RPPR=172.385;RPR=0;RUN=1;SAF=387;SAP=843.37;SAR=0;SRF=78;SRP=172.385;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:281:51,230:51:2048:230:8983:-723.383,0,-99.9141 0/1:52:13,39:13:527:39:1506:-120.134,0,-32.1236 0/1:132:14,118:14:548:118:4660:-379.595,0,-9.92582 dDocent_Contig_701 33 . T C 144.225 . AB=0.15;ABP=88.132;AC=2;AF=0.333333;AN=6;AO=13;CIGAR=2X2M1X;DP=220;DPB=220;DPRA=0;EPP=31.2394;EPPR=450.334;GTI=0;LEN=1;MEANALT=1.33333;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=498;QR=8093;RO=206;RPL=0;RPP=31.2394;RPPR=450.334;RPR=13;RUN=1;SAF=13;SAP=31.2394;SAR=0;SRF=206;SRP=450.334;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|0:140:139,1:139:5487:1:40:0,-38.1485,-489.71 0|1:20:18,2:18:699:2:80:-1.57119,0,-57.2163 0|1:60:49,10:49:1907:10:378:-16.1956,0,-153.672 dDocent_Contig_703 12 . T G 3779.98 . AB=0.645833;ABP=38.4777;AC=3;AF=0.5;AN=6;AO=124;CIGAR=1X;DP=192;DPB=192;DPRA=0;EPP=272.273;EPPR=150.67;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=4896;QR=2726;RO=68;RPL=0;RPP=272.273;RPPR=150.67;RPR=124;RUN=1;SAF=124;SAP=272.273;SAR=0;SRF=68;SRP=150.67;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:103:41,62:41:1646:62:2447:-189.373,0,-117.358 0/1:29:18,11:18:716:11:416:-29.0509,0,-56.0359 0/1:60:9,51:9:364:51:2033:-165.097,0,-15.0621 dDocent_Contig_704 66 . A G 993.123 . AB=0.804878;ABP=36.112;AC=1;AF=0.166667;AN=6;AO=33;CIGAR=1X;DP=139;DPB=139;DPRA=0.836735;EPP=74.6689;EPPR=233.186;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=1258;QR=4174;RO=106;RPL=33;RPP=74.6689;RPPR=233.186;RPR=0;RUN=1;SAF=33;SAP=74.6689;SAR=0;SRF=106;SRP=233.186;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:50:50,0:50:1969:0:0:0,-15.0515,-177.416 0/1:41:8,33:8:319:33:1258:-101.136,0,-16.7343 0/0:48:48,0:48:1886:0:0:0,-14.4494,-169.956 dDocent_Contig_707 142 . A T 93.366 . AB=0.384615;ABP=4.51363;AC=1;AF=0.166667;AN=6;AO=5;CIGAR=1X;DP=45;DPB=45;DPRA=0.8125;EPP=13.8677;EPPR=89.8692;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=164;QR=1463;RO=40;RPL=0;RPP=13.8677;RPPR=89.8692;RPR=5;RUN=1;SAF=0;SAP=13.8677;SAR=5;SRF=0;SRP=89.8692;SRR=40;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:21:21,0:21:770:0:0:0,-6.32163,-69.6275 0/0:11:11,0:11:403:0:0:0,-3.31133,-36.6162 0/1:13:8,5:8:290:5:164:-11.1605,0,-22.5347 dDocent_Contig_708 46 . C A 297.027 . AB=0.264151;ABP=28.6173;AC=3;AF=0.5;AN=6;AO=14;CIGAR=1X;DP=53;DPB=53;DPRA=0;EPP=33.4109;EPPR=87.6977;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=0.948718;PAO=0;PQA=0;PQR=0;PRO=0;QA=556;QR=1556;RO=39;RPL=0;RPP=33.4109;RPPR=87.6977;RPR=14;RUN=1;SAF=14;SAP=33.4109;SAR=0;SRF=39;SRP=87.6977;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:24:17,7:17:688:7:275:-17.8915,0,-55.0243 0/1:14:10,4:10:381:4:160:-10.5694,0,-30.4184 0/1:15:12,3:12:487:3:121:-6.76475,0,-39.6662 dDocent_Contig_709 98 . N G 90.7156 . AB=0;ABP=0;AC=4;AF=1;AN=4;AO=3;CIGAR=1X;DP=3;DPB=3;DPRA=0;EPP=9.52472;EPPR=0;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=0;NS=2;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=91;QR=0;RO=0;RPL=3;RPP=9.52472;RPPR=0;RPR=0;RUN=1;SAF=3;SAP=9.52472;SAR=0;SRF=0;SRP=0;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 1/1:2:0,2:0:0:2:66:-6.26836,-0.60206,0 ./.:.:.:.:.:.:.:. 1/1:1:0,1:0:0:1:25:-2.49986,-0.30103,0 dDocent_Contig_710 121 . G C 143.711 . AB=0.304348;ABP=10.6577;AC=1;AF=0.166667;AN=6;AO=12;CIGAR=1X;DP=93;DPB=93;DPRA=3.72727;EPP=29.068;EPPR=178.9;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=438;QR=3040;RO=81;RPL=0;RPP=29.068;RPPR=178.9;RPR=12;RUN=1;SAF=0;SAP=29.068;SAR=12;SRF=0;SRP=178.9;SRR=81;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:59:54,5:54:2001:5:185:0,-0.751477,-163.32 0/0:11:11,0:11:425:0:0:0,-3.31133,-38.6044 0/1:23:16,7:16:614:7:253:-16.1948,0,-48.6743 dDocent_Contig_711 62 . C T 185.471 . AB=0.137584;ABP=342.984;AC=1;AF=0.166667;AN=6;AO=48;CIGAR=1X;DP=432;DPB=432;DPRA=5.33784;EPP=107.241;EPPR=830.341;GTI=0;LEN=1;MEANALT=1.5;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=1409;QR=14639;RO=381;RPL=48;RPP=107.241;RPPR=830.341;RPR=0;RUN=1;SAF=48;SAP=107.241;SAR=0;SRF=381;SRP=830.341;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:298:254,41:254:9791:41:1209:-20.07,0,-791.709 0/0:37:37,0:37:1429:0:0:0,-11.1381,-128.874 0/0:97:90,7:90:3419:7:200:0,-10.9169,-289.521 dDocent_Contig_715 32 . G T 1124.48 . AB=0.394495;ABP=13.5489;AC=3;AF=0.5;AN=6;AO=43;CIGAR=2X3M1X;DP=109;DPB=109;DPRA=0;EPP=96.3836;EPPR=144.156;GTI=0;LEN=1;MEANALT=1.33333;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=1664;QR=2580;RO=65;RPL=0;RPP=96.3836;RPPR=144.156;RPR=43;RUN=1;SAF=43;SAP=96.3836;SAR=0;SRF=65;SRP=144.156;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|1:54:35,18:35:1387:18:685:-45.7186,0,-108.839 0|1:26:11,15:11:440:15:587:-45.3433,0,-32.1298 0|1:29:19,10:19:753:10:392:-26.9086,0,-59.3657 dDocent_Contig_716 15 . C T 2352.96 . AB=0.456522;ABP=6.03148;AC=3;AF=0.5;AN=6;AO=84;CIGAR=1X;DP=184;DPB=184;DPRA=0;EPP=185.414;EPPR=220.158;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=3282;QR=4032;RO=100;RPL=0;RPP=185.414;RPPR=220.158;RPR=84;RUN=1;SAF=84;SAP=185.414;SAR=0;SRF=100;SRP=220.158;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:92:51,41:51:2068:41:1633:-119.501,0,-158.597 0/1:18:13,5:13:514:5:196:-12.5945,0,-41.1832 0/1:74:36,38:36:1450:38:1453:-108.723,0,-108.468 dDocent_Contig_717 28 . C T 980.863 . AB=0.559322;ABP=4.81373;AC=2;AF=0.333333;AN=6;AO=33;CIGAR=2X;DP=64;DPB=64;DPRA=5.9;EPP=74.6689;EPPR=70.3259;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=1319;QR=1229;RO=31;RPL=0;RPP=74.6689;RPPR=70.3259;RPR=33;RUN=1;SAF=33;SAP=74.6689;SAR=0;SRF=31;SRP=70.3259;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|1:37:17,20:17:674:20:802:-61.3552,0,-49.8511 0|0:5:5,0:5:196:0:0:0,-1.50515,-18.014 0|1:22:9,13:9:359:13:517:-40.2539,0,-26.0504 dDocent_Contig_718 11 . G T 2615.35 . AB=0.173554;ABP=115.012;AC=1;AF=0.166667;AN=6;AO=21;CIGAR=1M1I2M1X2M1X1M;DP=134;DPB=147.5;DPRA=0;EPP=48.6112;EPPR=59.4686;GTI=0;LEN=1;MEANALT=2;MQM=60;MQMR=60;NS=3;NUMALT=2;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=819;QR=1022;RO=26;RPL=0;RPP=48.6112;RPPR=59.4686;RPR=21;RUN=1;SAF=21;SAP=48.6112;SAR=0;SRF=26;SRP=59.4686;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|0:64:10,9,45:10:394:9,45:357,1687:-135.146,-108.764,-138.474,0,-3.0245,-18.8675 0|0:13:7,0,6:7:277:0,6:0,216:-15.8755,-17.9827,-40.7997,0,-23.1931,-21.3869 1|0:57:9,12,36:9:351:12,36:462,1340:-116.036,-80.8116,-106.055,-9.07347,0,-27.0909 dDocent_Contig_719 28 . C G 388.259 . AB=0.24;ABP=47.0478;AC=3;AF=0.5;AN=6;AO=18;CIGAR=1X;DP=75;DPB=75;DPRA=0;EPP=42.0968;EPPR=118.251;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=0.982456;PAO=0;PQA=0;PQR=0;PRO=0;QA=731;QR=2243;RO=57;RPL=0;RPP=42.0968;RPPR=126.784;RPR=18;RUN=1;SAF=18;SAP=42.0968;SAR=0;SRF=56;SRP=118.251;SRR=1;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:36:29,7:29:1114:7:282:-14.9157,0,-89.6965 0/1:9:5,4:5:197:4:163:-12.3492,0,-15.3965 0/1:30:23,7:23:932:7:286:-17.0839,0,-75.1502 dDocent_Contig_720 13 . C T 456.283 . AB=0.123288;ABP=452.922;AC=3;AF=0.5;AN=6;AO=45;CIGAR=1X;DP=365;DPB=365;DPRA=0;EPP=100.727;EPPR=697.881;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=0.99375;PAO=0;PQA=0;PQR=0;PRO=0;QA=1775;QR=12789;RO=320;RPL=0;RPP=100.727;RPPR=697.881;RPR=45;RUN=1;SAF=45;SAP=100.727;SAR=0;SRF=320;SRP=697.881;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:234:209,25:209:8329:25:981:-18.1445,0,-678.696 0/1:32:29,3:29:1176:3:123:-1.83183,0,-96.4823 0/1:99:82,17:82:3284:17:671:-30.918,0,-265.818 dDocent_Contig_721 22 . A G 216.801 . AB=0.232558;ABP=29.7245;AC=1;AF=0.166667;AN=6;AO=12;CIGAR=1X;DP=188;DPB=188;DPRA=1.68605;EPP=29.068;EPPR=385.189;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=0.977273;PAO=0;PQA=0;PQR=0;PRO=0;QA=483;QR=6896;RO=176;RPL=0;RPP=29.068;RPPR=385.189;RPR=12;RUN=1;SAF=12;SAP=29.068;SAR=0;SRF=176;SRP=385.189;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:102:100,2:100:3918:2:82:0,-22.9254,-344.88 0/1:43:33,10:33:1280:10:401:-23.504,0,-102.526 0/0:43:43,0:43:1698:0:0:0,-12.9443,-153.053 dDocent_Contig_722 49 . G C 748.84 . AB=0.231788;ABP=97.3615;AC=2;AF=0.333333;AN=6;AO=36;CIGAR=1X;DP=163;DPB=163;DPRA=0;EPP=81.1833;EPPR=229.134;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=1404;QR=5036;RO=127;RPL=36;RPP=81.1833;RPPR=229.134;RPR=0;RUN=1;SAF=36;SAP=81.1833;SAR=0;SRF=127;SRP=278.787;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:90:68,22:68:2697:22:854:-50.0758,0,-215.744 0/0:12:11,1:11:437:1:35:0,-0.113731,-36.1848 0/1:61:48,13:48:1902:13:515:-28.33,0,-153.026 dDocent_Contig_723 63 . C G 436.922 . AB=0.206612;ABP=93.4764;AC=3;AF=0.5;AN=6;AO=25;CIGAR=1X;DP=121;DPB=121;DPRA=0;EPP=57.2971;EPPR=211.472;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=940;QR=3754;RO=96;RPL=25;RPP=57.2971;RPPR=211.472;RPR=0;RUN=1;SAF=25;SAP=57.2971;SAR=0;SRF=96;SRP=211.472;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:82:66,16:66:2600:16:604:-30.0041,0,-209.467 0/1:14:11,3:11:439:3:105:-5.5788,0,-35.6515 0/1:25:19,6:19:715:6:231:-13.6322,0,-57.1427 dDocent_Contig_724 7 . T C 282.876 . AB=0.257143;ABP=20.9405;AC=2;AF=0.333333;AN=6;AO=9;CIGAR=2M1X4M;DP=55;DPB=54.5714;DPRA=0;EPP=22.5536;EPPR=76.8404;GTI=0;LEN=1;MEANALT=2;MQM=49;MQMR=60;NS=3;NUMALT=3;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=347;QR=1318;RO=34;RPL=0;RPP=22.5536;RPPR=76.8404;RPR=9;RUN=1;SAF=9;SAP=22.5536;SAR=0;SRF=34;SRP=76.8404;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|0:20:12,5,3,0:12:465:5,3,0:192,117,0:-12.137,0,-36.6952,-6.12943,-28.5822,-43.4312,-15.7494,-38.2003,-44.3343,-53.9525 0|1:14:10,0,2,2:10:387:0,2,2:0,72,76:-3.17487,-6.18517,-37.9889,-0.318807,-32.1178,-31.5157,0,-31.8129,-25.9427,-31.2109 0|1:21:12,2,0,7:12:466:2,0,7:76,0,271:-18.4259,-15.8089,-53.5016,-22.0382,-54.1037,-60.3332,0,-32.0701,-38.299,-36.1918 dDocent_Contig_725 13 . T C 713.9 . AB=0.307692;ABP=32.2417;AC=2;AF=0.333333;AN=6;AO=29;CIGAR=1X2M;DP=107;DPB=107;DPRA=0;EPP=65.983;EPPR=168.042;GTI=0;LEN=1;MEANALT=1.33333;MQM=60;MQMR=60;NS=3;NUMALT=2;ODDS=6.93889e-18;PAIRED=0.0344828;PAIREDR=0.657895;PAO=0;PQA=0;PQR=0;PRO=0;QA=1165;QR=2888;RO=76;RPL=0;RPP=65.983;RPPR=168.042;RPR=29;RUN=1;SAF=29;SAP=65.983;SAR=0;SRF=76;SRP=168.042;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|1:52:38,0,14:38:1442:0,14:0,560:-35.0872,-46.5264,-164.747,0,-118.615,-114.4 0|0:16:15,0,1:15:563:0,1:0,38:0,-4.51545,-50.6269,-1.01921,-47.5101,-47.2091 0|1:39:23,2,14:23:883:2,14:82,567:-39.8255,-39.9805,-111.842,0,-65.6821,-68.2379 dDocent_Contig_726 107 . N T 139.759 . AB=0;ABP=0;AC=4;AF=1;AN=4;AO=4;CIGAR=1X;DP=4;DPB=4;DPRA=0;EPP=11.6962;EPPR=0;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=0;NS=2;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=144;QR=0;RO=0;RPL=0;RPP=11.6962;RPPR=0;RPR=4;RUN=1;SAF=0;SAP=11.6962;SAR=4;SRF=0;SRP=0;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 1/1:1:0,1:0:0:1:36:-3.59827,-0.30103,0 ./.:.:.:.:.:.:.:. 1/1:3:0,3:0:0:3:108:-10.0752,-0.90309,0 dDocent_Contig_727 12 . G A 153.353 . AB=0.375;ABP=5.18177;AC=1;AF=0.166667;AN=6;AO=12;CIGAR=1X;DP=113;DPB=113;DPRA=0;EPP=29.068;EPPR=222.329;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=470;QR=4050;RO=101;RPL=0;RPP=29.068;RPPR=222.329;RPR=12;RUN=1;SAF=12;SAP=29.068;SAR=0;SRF=101;SRP=222.329;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:49:46,3:46:1829:3:109:0,-4.58748,-154.659 0/1:16:10,6:10:401:6:240:-17.1592,0,-31.634 0/0:48:45,3:45:1820:3:121:0,-3.16945,-152.726 dDocent_Contig_728 12 . C T 137.765 . AB=0.190476;ABP=37.9607;AC=2;AF=0.333333;AN=6;AO=9;CIGAR=1X;DP=67;DPB=67;DPRA=0;EPP=22.5536;EPPR=128.956;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=364;QR=2349;RO=58;RPL=0;RPP=22.5536;RPPR=128.956;RPR=9;RUN=1;SAF=9;SAP=22.5536;SAR=0;SRF=58;SRP=128.956;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:24:18,6:18:733:6:244:-15.1141,0,-59.069 0/1:18:16,2:16:637:2:79:-2.0787,0,-52.2475 0/0:25:24,1:24:979:1:41:0,-3.43118,-84.3105 dDocent_Contig_730 32 . T C 49.8681 . AB=0.230769;ABP=11.1951;AC=1;AF=0.166667;AN=6;AO=3;CIGAR=2X;DP=102;DPB=102;DPRA=0.292135;EPP=9.52472;EPPR=217.986;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=115;QR=3738;RO=99;RPL=0;RPP=9.52472;RPPR=217.986;RPR=3;RUN=1;SAF=3;SAP=9.52472;SAR=0;SRF=99;SRP=217.986;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|0:77:77,0:77:2890:0:0:0,-23.1793,-260.267 0|0:12:12,0:12:457:0:0:0,-3.61236,-41.4767 0|1:13:10,3:10:391:3:115:-6.81071,0,-31.6354 dDocent_Contig_731 31 . T A 166.34 . AB=0.138298;ABP=109.828;AC=2;AF=0.333333;AN=6;AO=13;CIGAR=1X;DP=101;DPB=101;DPRA=6.71429;EPP=31.2394;EPPR=194.1;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=0.863636;PAO=0;PQA=0;PQR=0;PRO=0;QA=530;QR=3499;RO=88;RPL=0;RPP=31.2394;RPPR=194.1;RPR=13;RUN=1;SAF=13;SAP=31.2394;SAR=0;SRF=88;SRP=194.1;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:62:53,9:53:2109:9:367:-14.7314,0,-171.319 0/0:7:7,0:7:277:0:0:0,-2.10721,-25.2997 0/1:32:28,4:28:1113:4:163:-5.42547,0,-90.8235 dDocent_Contig_732 8 . T A 1304.6 . AB=0.661765;ABP=18.4661;AC=3;AF=0.5;AN=6;AO=45;CIGAR=1X;DP=68;DPB=68;DPRA=0;EPP=100.727;EPPR=52.9542;GTI=0;LEN=1;MEANALT=1;MQM=59.9556;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=0.466667;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=1727;QR=886;RO=23;RPL=0;RPP=100.727;RPPR=52.9542;RPR=45;RUN=1;SAF=45;SAP=100.727;SAR=0;SRF=23;SRP=52.9542;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:35:10,25:10:389:25:967:-76.8062,0,-24.8323 0/1:25:7,18:7:268:18:683:-54.276,0,-16.9581 0/1:8:6,2:6:229:2:77:-4.9009,0,-18.5671 dDocent_Contig_733 20 . G A 286.981 . AB=0.134078;ABP=211.193;AC=2;AF=0.333333;AN=6;AO=24;CIGAR=1X;DP=201;DPB=201;DPRA=4.06818;EPP=55.1256;EPPR=387.361;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=949;QR=6985;RO=177;RPL=0;RPP=55.1256;RPPR=387.361;RPR=24;RUN=1;SAF=24;SAP=55.1256;SAR=0;SRF=177;SRP=387.361;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:107:93,14:93:3666:14:560:-18.5325,0,-297.768 0/0:22:22,0:22:869:0:0:0,-6.62266,-78.519 0/1:72:62,10:62:2450:10:389:-13.6885,0,-198.983 dDocent_Contig_734 73 . G A 187.919 . AB=0.203125;ABP=52.0041;AC=2;AF=0.333333;AN=6;AO=13;CIGAR=1X;DP=69;DPB=69;DPRA=6.4;EPP=31.2394;EPPR=124.613;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=0.982143;PAO=0;PQA=0;PQR=0;PRO=0;QA=448;QR=1985;RO=56;RPL=13;RPP=31.2394;RPPR=124.613;RPR=0;RUN=1;SAF=13;SAP=31.2394;SAR=0;SRF=56;SRP=124.613;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:50:45,5:45:1594:5:176:-1.1338,0,-128.696 0/0:5:5,0:5:183:0:0:0,-1.50515,-16.8268 0/1:14:6,8:6:208:8:272:-20.5965,0,-14.8452 dDocent_Contig_735 75 . A T 695.775 . AB=0.219251;ABP=131.034;AC=3;AF=0.5;AN=6;AO=41;CIGAR=1X;DP=187;DPB=187;DPRA=0;EPP=92.0407;EPPR=317.874;GTI=0;LEN=1;MEANALT=1.33333;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=1447;QR=5436;RO=145;RPL=41;RPP=92.0407;RPPR=317.874;RPR=0;RUN=1;SAF=41;SAP=92.0407;SAR=0;SRF=145;SRP=317.874;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:88:66,22:66:2500:22:811:-46.817,0,-198.717 0/1:49:43,6:43:1643:6:200:-3.56892,0,-133.368 0/1:50:36,13:36:1293:13:436:-24.7106,0,-101.826 dDocent_Contig_736 30 . A G 46.8567 . AB=0.214286;ABP=12.937;AC=1;AF=0.166667;AN=6;AO=3;CIGAR=1X;DP=171;DPB=171;DPRA=0.178344;EPP=9.52472;EPPR=367.818;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=115;QR=6660;RO=168;RPL=0;RPP=9.52472;RPPR=367.818;RPR=3;RUN=1;SAF=3;SAP=9.52472;SAR=0;SRF=168;SRP=367.818;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:106:106,0:106:4196:0:0:0,-31.9092,-377.633 0/1:14:11,3:11:434:3:115:-6.50957,0,-35.2005 0/0:51:51,0:51:2030:0:0:0,-15.3525,-182.9 dDocent_Contig_737 107 . N T 167.528 . AB=0;ABP=0;AC=4;AF=1;AN=4;AO=5;CIGAR=1X;DP=5;DPB=5;DPRA=0;EPP=13.8677;EPPR=0;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=0;NS=2;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=175;QR=0;RO=0;RPL=0;RPP=13.8677;RPPR=0;RPR=5;RUN=1;SAF=0;SAP=13.8677;SAR=5;SRF=0;SRP=0;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 1/1:4:0,4:0:0:4:139:-12.8522,-1.20412,0 1/1:1:0,1:0:0:1:36:-3.59827,-0.30103,0 ./.:.:.:.:.:.:.:. dDocent_Contig_739 64 . G A 116.118 . AB=0.2;ABP=34.2795;AC=1;AF=0.166667;AN=6;AO=8;CIGAR=1X;DP=78;DPB=78;DPRA=2.10526;EPP=20.3821;EPPR=155.013;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=3.46945e-18;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=276;QR=2525;RO=70;RPL=8;RPP=20.3821;RPPR=155.013;RPR=0;RUN=1;SAF=8;SAP=20.3821;SAR=0;SRF=70;SRP=155.013;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:40:32,8:32:1152:8:276:-13.1347,0,-91.9326 0/0:13:13,0:13:478:0:0:0,-3.91339,-43.3528 0/0:25:25,0:25:895:0:0:0,-7.52575,-80.8611 dDocent_Contig_740 19 . G A 2567.62 . AB=0.283626;ABP=142.086;AC=2;AF=0.333333;AN=6;AO=97;CIGAR=2X;DP=342;DPB=342;DPRA=0;EPP=213.643;EPPR=409.076;GTI=0;LEN=1;MEANALT=2;MQM=60;MQMR=60;NS=3;NUMALT=2;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=3838;QR=7213;RO=187;RPL=0;RPP=213.643;RPPR=409.076;RPR=97;RUN=1;SAF=97;SAP=213.643;SAR=0;SRF=187;SRP=409.076;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|1:219:124,61,34:124:4774:61,34:2420,1354:-161.857,0,-373.569,-87.7045,-280.449,-469.404 0|0:40:23,8,9:23:896:8,9:321,355:-22.279,-2.75004,-73.9812,0,-47.1818,-70.9249 0|1:83:40,28,15:40:1543:28,15:1097,603:-78.1481,0,-118.26,-40.4936,-76.9919,-162.675 dDocent_Contig_741 34 . G A 383.151 . AB=0.444444;ABP=3.9754;AC=2;AF=0.333333;AN=6;AO=16;CIGAR=1X;DP=46;DPB=46;DPRA=1.8;EPP=5.18177;EPPR=68.1545;GTI=0;LEN=1;MEANALT=1;MQM=49.5;MQMR=60;NS=3;NUMALT=1;ODDS=3.46945e-18;PAIRED=0.25;PAIREDR=0.933333;PAO=0;PQA=0;PQR=0;PRO=0;QA=622;QR=1183;RO=30;RPL=12;RPP=11.6962;RPPR=68.1545;RPR=4;RUN=1;SAF=10;SAP=5.18177;SAR=6;SRF=30;SRP=68.1545;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:17:12,5:12:476:5:202:-11.1069,0,-38.0738 0/1:19:8,11:8:307:11:420:-30.7312,0,-22.2688 0/0:10:10,0:10:400:0:0:0,-3.0103,-36.3589 dDocent_Contig_742 98 . N T 417.252 . AB=0;ABP=0;AC=6;AF=1;AN=6;AO=13;CIGAR=1X;DP=13;DPB=13;DPRA=0;EPP=31.2394;EPPR=0;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=0;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=447;QR=0;RO=0;RPL=13;RPP=31.2394;RPPR=0;RPR=0;RUN=1;SAF=13;SAP=31.2394;SAR=0;SRF=0;SRP=0;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 1/1:8:0,8:0:0:8:274:-24.9934,-2.40824,0 1/1:3:0,3:0:0:3:105:-9.79616,-0.90309,0 1/1:2:0,2:0:0:2:68:-6.45793,-0.60206,0 dDocent_Contig_743 7 . C A 41135.6 . AB=0;ABP=0;AC=6;AF=1;AN=6;AO=1439;CIGAR=1M1X4M;DP=1599;DPB=1580.33;DPRA=0;EPP=3127.76;EPPR=135.47;GTI=0;LEN=1;MEANALT=6.66667;MQM=42.606;MQMR=60;NS=3;NUMALT=2;ODDS=0;PAIRED=0.800556;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=50147;QR=2355;RO=61;RPL=0;RPP=3127.76;RPPR=135.47;RPR=1439;RUN=1;SAF=1439;SAP=3127.76;SAR=0;SRF=61;SRP=135.47;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 1|1:983:41,7,905:41:1580:7,905:272,31542:-2578.92,-2569.28,-2696.92,-142.685,-250.45,0 1|1:179:2,11,154:2:77:11,154:417,5229:-441.189,-408.094,-411.106,-40.034,-12.6527,0 1|1:437:18,10,380:18:698:10,380:379,13376:-1092.97,-1067.78,-1122.12,-57.0386,-83.7805,0 dDocent_Contig_745 107 . N A 287.792 . AB=0;ABP=0;AC=2;AF=1;AN=2;AO=9;CIGAR=1X;DP=9;DPB=9;DPRA=0;EPP=22.5536;EPPR=0;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=0;NS=1;NUMALT=1;ODDS=10.8435;PAIRED=1;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=316;QR=0;RO=0;RPL=0;RPP=22.5536;RPPR=0;RPR=9;RUN=1;SAF=0;SAP=22.5536;SAR=9;SRF=0;SRP=0;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 1/1:9:0,9:0:0:9:316:-28.7792,-2.70927,0 ./.:.:.:.:.:.:.:. ./.:.:.:.:.:.:.:. dDocent_Contig_746 48 . G A 228.974 . AB=0.22;ABP=37.059;AC=1;AF=0.166667;AN=6;AO=16;CIGAR=1X;DP=171;DPB=171;DPRA=0;EPP=37.7539;EPPR=6.16244;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=0.993548;PAO=0;PQA=0;PQR=0;PRO=0;QA=641;QR=6145;RO=155;RPL=16;RPP=37.7539;RPPR=6.16244;RPR=0;RUN=1;SAF=16;SAP=37.7539;SAR=0;SRF=155;SRP=339.589;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:69:68,1:68:2703:1:41:0,-16.6765,-239.3 0/1:50:39,11:39:1551:11:438:-24.721,0,-124.782 0/0:52:48,4:48:1891:4:162:0,-0.686813,-155.422 dDocent_Contig_747 5 . T A 56.9089 . AB=0.111111;ABP=26.6552;AC=3;AF=0.5;AN=6;AO=2;CIGAR=5I3M2X1M1X2M2X;DP=35;DPB=38.6364;DPRA=0;EPP=7.35324;EPPR=61.6401;GTI=0;LEN=1;MEANALT=2;MQM=50;MQMR=60;NS=3;NUMALT=2;ODDS=3.46945e-18;PAIRED=0;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=74;QR=1013;RO=27;RPL=0;RPP=7.35324;RPPR=61.6401;RPR=2;RUN=1;SAF=2;SAP=7.35324;SAR=0;SRF=27;SRP=61.6401;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|1:7:6,1,0:6:225:1,0:37,0:-1.5413,0,-18.5039,-3.34748,-18.8049,-21.7861 0|1:10:7,3,0:7:263:3,0:111,0:-7.32568,0,-21.0195,-9.43289,-21.9226,-30.9844 0|1:18:14,2,2:14:525:2,2:74,74:-1.82915,0,-42.4088,-0.0407635,-37.0079,-42.4477 dDocent_Contig_748 127 . T G 182.135 . AB=0.22;ABP=37.059;AC=2;AF=0.333333;AN=6;AO=11;CIGAR=1X;DP=60;DPB=60;DPRA=2.5;EPP=26.8965;EPPR=109.412;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=3.46945e-18;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=381;QR=1681;RO=49;RPL=0;RPP=26.8965;RPPR=109.412;RPR=11;RUN=1;SAF=0;SAP=26.8965;SAR=11;SRF=0;SRP=109.412;SRR=49;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:39:29,10:29:992:10:346:-19.7341,0,-77.8484 0/0:10:10,0:10:345:0:0:0,-3.0103,-31.3835 0/1:11:10,1:10:344:1:35:-0.187299,0,-27.9815 dDocent_Contig_749 28 . G A 1126.65 . AB=0.222222;ABP=159.839;AC=3;AF=0.5;AN=6;AO=52;CIGAR=1X;DP=234;DPB=234;DPRA=0;EPP=115.927;EPPR=398.218;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=1.38778e-17;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=2085;QR=7140;RO=182;RPL=0;RPP=115.927;RPPR=398.218;RPR=52;RUN=1;SAF=52;SAP=115.927;SAR=0;SRF=182;SRP=398.218;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:138:100,38:100:3902:38:1531:-96.488,0,-309.655 0/1:31:24,7:24:952:7:274:-15.6953,0,-76.6471 0/1:65:58,7:58:2286:7:280:-6.00424,0,-186.341 dDocent_Contig_750 40 . G A 2316.18 . AB=0.242206;ABP=243.721;AC=3;AF=0.5;AN=6;AO=101;CIGAR=1X;DP=417;DPB=417;DPRA=0;EPP=222.329;EPPR=689.196;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=4021;QR=12532;RO=316;RPL=0;RPP=222.329;RPPR=689.196;RPR=101;RUN=1;SAF=101;SAP=222.329;SAR=0;SRF=316;SRP=689.196;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:237:166,71:166:6580:71:2842:-184.547,0,-520.574 0/1:70:56,14:56:2226:14:543:-28.1322,0,-179.444 0/1:110:94,16:94:3726:16:636:-24.4613,0,-302.25 dDocent_Contig_752 68 . C G 544.706 . AB=0.2;ABP=135.904;AC=3;AF=0.5;AN=6;AO=34;CIGAR=1X;DP=170;DPB=170;DPRA=0;EPP=39.7976;EPPR=298.331;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=0.705882;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=1224;QR=5346;RO=136;RPL=34;RPP=76.8404;RPPR=298.331;RPR=0;RUN=1;SAF=29;SAP=39.7976;SAR=5;SRF=136;SRP=298.331;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:100:83,17:83:3279:17:593:-23.5729,0,-265.067 0/1:48:34,14:34:1321:14:515:-32.2246,0,-104.704 0/1:22:19,3:19:746:3:116:-4.19504,0,-60.8388 dDocent_Contig_754 19 . A C 2492.51 . AB=0.0569106;ABP=212.76;AC=3;AF=0.5;AN=6;AO=7;CIGAR=2X1M1X2M1X;DP=143;DPB=143;DPRA=0;EPP=18.2106;EPPR=107.241;GTI=0;LEN=1;MEANALT=3;MQM=59.8571;MQMR=60;NS=3;NUMALT=2;ODDS=1.38778e-17;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=279;QR=1918;RO=48;RPL=0;RPP=18.2106;RPPR=107.241;RPR=7;RUN=1;SAF=7;SAP=18.2106;SAR=0;SRF=48;SRP=107.241;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|1:96:30,58,5:30:1199:58,5:2283,197:-178.766,0,-81.3021,-171.59,-82.5563,-268.847 0|1:27:8,16,2:8:317:16,2:632,82:-49.5898,0,-21.2711,-45.2283,-19.3168,-70.7194 0|1:20:10,9,0:10:402:9,0:357,0:-26.4183,0,-30.4659,-29.4286,-33.1752,-62.5618 dDocent_Contig_755 20 . T G 116.24 . AB=0.136364;ABP=78.8144;AC=2;AF=0.333333;AN=6;AO=9;CIGAR=1X;DP=71;DPB=71;DPRA=6.6;EPP=22.5536;EPPR=137.642;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=0.444444;PAIREDR=0.870968;PAO=0;PQA=0;PQR=0;PRO=0;QA=363;QR=2499;RO=62;RPL=0;RPP=22.5536;RPPR=137.642;RPR=9;RUN=1;SAF=9;SAP=22.5536;SAR=0;SRF=62;SRP=137.642;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:18:13,5:13:531:5:202:-13.143,0,-42.7178 0/1:48:44,4:44:1764:4:161:-0.426045,0,-144.528 0/0:5:5,0:5:204:0:0:0,-1.50515,-18.744 dDocent_Contig_756 21 . C T 1198 . AB=0.40367;ABP=11.7958;AC=3;AF=0.5;AN=6;AO=44;CIGAR=1X;DP=109;DPB=109;DPRA=0;EPP=98.5551;EPPR=137.642;GTI=0;LEN=1;MEANALT=1.66667;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=1744;QR=2431;RO=62;RPL=0;RPP=98.5551;RPPR=137.642;RPR=44;RUN=1;SAF=44;SAP=98.5551;SAR=0;SRF=62;SRP=137.642;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:55:24,29:24:945:29:1146:-87.115,0,-69.0497 0/1:33:27,6:27:1039:6:235:-11.5853,0,-83.8685 0/1:21:11,9:11:447:9:363:-26.6227,0,-34.1739 dDocent_Contig_757 16 . T A 8203.88 . AB=0.762611;ABP=204.88;AC=3;AF=0.5;AN=6;AO=257;CIGAR=3M1X;DP=337;DPB=340.75;DPRA=0;EPP=561.079;EPPR=144.156;GTI=0;LEN=1;MEANALT=1.66667;MQM=60;MQMR=60;NS=3;NUMALT=2;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=10261;QR=2536;RO=65;RPL=0;RPP=561.079;RPPR=144.156;RPR=257;RUN=1;SAF=257;SAP=561.079;SAR=0;SRF=65;SRP=144.156;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|1:182:33,14,135:33:1283:14,135:540,5388:-433.808,-399.401,-500.611,0,-61.0874,-64.7898 0|1:69:19,1,49:19:743:1,49:40,1960:-155.726,-158.151,-218.936,0,-57.7843,-46.3294 0|1:86:13,0,73:13:510:0,73:0,2913:-236.377,-240.29,-282.23,0,-42.3329,-20.3577 dDocent_Contig_758 27 . A G 2598.18 . AB=0.428571;ABP=12.6268;AC=3;AF=0.5;AN=6;AO=93;CIGAR=1X;DP=217;DPB=217;DPRA=0;EPP=204.957;EPPR=272.273;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=1.38778e-17;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=3665;QR=4948;RO=124;RPL=0;RPP=204.957;RPPR=272.273;RPR=93;RUN=1;SAF=93;SAP=204.957;SAR=0;SRF=124;SRP=272.273;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:114:52,62:52:2079:62:2447:-186.054,0,-152.977 0/1:31:20,11:20:771:11:439:-30.5321,0,-60.3658 0/1:72:52,20:52:2098:20:779:-48.7549,0,-167.32 dDocent_Contig_759 14 . A G 84.4369 . AB=0.266667;ABP=10.1038;AC=1;AF=0.166667;AN=6;AO=7;CIGAR=1X;DP=71;DPB=71;DPRA=0;EPP=18.2106;EPPR=141.985;GTI=0;LEN=1;MEANALT=1;MQM=59.2857;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=0.571429;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=263;QR=2528;RO=64;RPL=0;RPP=18.2106;RPPR=141.985;RPR=7;RUN=1;SAF=7;SAP=18.2106;SAR=0;SRF=64;SRP=141.985;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:39:37,2:37:1485:2:62:0,-5.85538,-128.011 0/0:17:16,1:16:611:1:41:0,-1.03446,-51.2382 0/1:15:11,4:11:432:4:160:-10.2675,0,-34.7177 dDocent_Contig_760 7 . T A 2578.53 . AB=0.380074;ABP=36.8644;AC=3;AF=0.5;AN=6;AO=103;CIGAR=1X2M1X;DP=271;DPB=271;DPRA=0;EPP=226.672;EPPR=354.789;GTI=0;LEN=1;MEANALT=1.66667;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=0.990291;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=3811;QR=6126;RO=162;RPL=0;RPP=226.672;RPPR=354.789;RPR=103;RUN=1;SAF=103;SAP=226.672;SAR=0;SRF=162;SRP=354.789;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|1:144:90,51:90:3392:51:1887:-127.246,0,-262.593 0|1:30:21,9:21:790:9:332:-21.1999,0,-62.3935 0|1:97:51,43:51:1944:43:1592:-114.929,0,-146.583 dDocent_Contig_761 26 . C T 75.2734 . AB=0.0945455;ABP=395.684;AC=2;AF=0.333333;AN=6;AO=31;CIGAR=1X;DP=384;DPB=384;DPRA=0;EPP=70.3259;EPPR=769.54;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=59.8527;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=0.994334;PAO=0;PQA=0;PQR=0;PRO=0;QA=1236;QR=13997;RO=353;RPL=0;RPP=70.3259;RPPR=769.54;RPR=31;RUN=1;SAF=31;SAP=70.3259;SAR=0;SRF=353;SRP=769.54;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:184:167,17:167:6648:17:676:-5.77332,0,-542.091 0/0:109:104,5:104:4070:5:201:0,-14.3418,-347.607 0/1:91:82,9:82:3279:9:359:-5.2768,0,-267.777 dDocent_Contig_762 39 . T A 8456.48 . AB=0.63587;ABP=62.0177;AC=5;AF=0.833333;AN=6;AO=234;CIGAR=1X3M;DP=368;DPB=368;DPRA=0;EPP=511.135;EPPR=131.127;GTI=0;LEN=1;MEANALT=3;MQM=60;MQMR=60;NS=3;NUMALT=2;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=9191;QR=2333;RO=59;RPL=0;RPP=511.135;RPPR=131.127;RPR=234;RUN=1;SAF=234;SAP=511.135;SAR=0;SRF=59;SRP=131.127;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|1:185:47,24,113:47:1868:24,113:957,4400:-347.41,-282.744,-429.316,0,-74.9817,-119.779 1|1:74:5,21,46:5:191:21,46:812,1820:-199.297,-134.114,-143.459,-51.0285,0,-52.8484 1|1:109:7,27,75:7:274:27,75:1031,2971:-304.463,-221.994,-236.395,-62.0414,0,-61.9949 dDocent_Contig_763 131 . G T 110.105 . AB=0.25;ABP=22.5536;AC=2;AF=0.333333;AN=6;AO=9;CIGAR=1X1M1X;DP=61;DPB=61;DPRA=0.72;EPP=22.5536;EPPR=115.927;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=275;QR=1780;RO=52;RPL=0;RPP=22.5536;RPPR=115.927;RPR=9;RUN=1;SAF=0;SAP=22.5536;SAR=9;SRF=0;SRP=115.927;SRR=52;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|0:25:25,0:25:861:0:0:0,-7.52575,-77.8065 0|1:27:20,7:20:680:7:211:-11.1581,0,-53.3912 0|1:9:7,2:7:239:2:64:-3.3691,0,-19.1349 dDocent_Contig_764 189 . C T 570.148 . AB=0.220472;ABP=89.2024;AC=2;AF=0.333333;AN=6;AO=33;CIGAR=1X;DP=247;DPB=247;DPRA=0;EPP=74.6689;EPPR=467.705;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=1291;QR=8362;RO=214;RPL=33;RPP=74.6689;RPPR=467.705;RPR=0;RUN=1;SAF=0;SAP=74.6689;SAR=33;SRF=0;SRP=467.705;SRR=214;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:120:115,5:115:4534:5:201:0,-17.6531,-389.528 0/1:50:39,11:39:1535:11:418:-22.9082,0,-123.344 0/1:77:60,17:60:2293:17:672:-37.6294,0,-183.351 dDocent_Contig_765 8 . G T 9490.52 . AB=0.141079;ABP=542.346;AC=1;AF=0.166667;AN=6;AO=68;CIGAR=2X;DP=482;DPB=482;DPRA=0;EPP=150.67;EPPR=178.9;GTI=0;LEN=1;MEANALT=3.66667;MQM=60;MQMR=60;NS=3;NUMALT=3;ODDS=0;PAIRED=0.970588;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=2594;QR=3086;RO=81;RPL=0;RPP=150.67;RPPR=178.9;RPR=68;RUN=1;SAF=68;SAP=150.67;SAR=0;SRF=81;SRP=178.9;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 1|0:251:40,41,4,166:40:1525:41,4,166:1551,151,6360:-511.965,-396.867,-509.629,-511.63,-509.595,-635.531,-2.03286,0,-114.763,-77.1679 0|0:86:17,9,7,51:17:648:9,7,51:348,268,1929:-153.001,-129.533,-179.982,-136.125,-160.697,-187.175,0,-24.5695,-31.1618,-37.8028 0|0:145:24,18,0,96:24:913:18,0,96:695,0,3622:-289.607,-239.75,-309.215,-296.831,-314.634,-371.715,0,-17.8007,-74.8856,-45.9867 dDocent_Contig_766 29 . A C 120.863 . AB=0;ABP=0;AC=2;AF=1;AN=2;AO=4;CIGAR=1X;DP=4;DPB=4;DPRA=0;EPP=11.6962;EPPR=0;GTI=0;LEN=1;MEANALT=1;MQM=42.5;MQMR=0;NS=1;NUMALT=1;ODDS=7.37776;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=162;QR=0;RO=0;RPL=2;RPP=3.0103;RPPR=0;RPR=2;RUN=1;SAF=2;SAP=3.0103;SAR=2;SRF=0;SRP=0;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL ./.:.:.:.:.:.:.:. 1/1:4:0,4:0:0:4:162:-12.0861,-1.20412,0 ./.:.:.:.:.:.:.:. dDocent_Contig_767 131 . G C 67.6453 . AB=0.25;ABP=11.6962;AC=1;AF=0.166667;AN=6;AO=4;CIGAR=1X;DP=62;DPB=62;DPRA=0.695652;EPP=11.6962;EPPR=128.956;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=145;QR=2221;RO=58;RPL=0;RPP=11.6962;RPPR=128.956;RPR=4;RUN=1;SAF=0;SAP=11.6962;SAR=4;SRF=0;SRP=128.956;SRR=58;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:35:35,0:35:1348:0:0:0,-10.536,-121.604 0/1:16:12,4:12:464:4:145:-8.58844,0,-37.2949 0/0:11:11,0:11:409:0:0:0,-3.31133,-37.1554 dDocent_Contig_768 14 . T A 134.025 . AB=0.114458;ABP=217.332;AC=3;AF=0.5;AN=6;AO=19;CIGAR=1X;DP=166;DPB=166;DPRA=0;EPP=44.2683;EPPR=322.217;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=751;QR=5896;RO=147;RPL=0;RPP=44.2683;RPPR=322.217;RPR=19;RUN=1;SAF=19;SAP=44.2683;SAR=0;SRF=147;SRP=322.217;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:67:60,7:60:2404:7:284:-5.76498,0,-196.331 0/1:52:47,5:47:1864:5:191:-1.90018,0,-152.311 0/1:47:40,7:40:1628:7:276:-11.0583,0,-132.593 dDocent_Contig_769 106 . N T 191.405 . AB=0;ABP=0;AC=4;AF=1;AN=4;AO=6;CIGAR=2X;DP=6;DPB=6;DPRA=0;EPP=16.0391;EPPR=0;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=0;NS=2;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=202;QR=0;RO=0;RPL=0;RPP=16.0391;RPPR=0;RPR=6;RUN=1;SAF=0;SAP=16.0391;SAR=6;SRF=0;SRP=0;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 1|1:4:0,4:0:0:4:138:-12.7604,-1.20412,0 .:.:.:.:.:.:.:. 1|1:2:0,2:0:0:2:64:-6.07837,-0.60206,0 dDocent_Contig_770 30 . A T 424.85 . AB=0.135246;ABP=284.981;AC=2;AF=0.333333;AN=6;AO=40;CIGAR=1X;DP=339;DPB=339;DPRA=0;EPP=89.8692;EPPR=652.281;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=1606;QR=11868;RO=299;RPL=0;RPP=89.8692;RPPR=652.281;RPR=40;RUN=1;SAF=40;SAP=89.8692;SAR=0;SRF=299;SRP=652.281;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:184:165,19:165:6589:19:767:-13.9597,0,-537.327 0/1:60:46,14:46:1810:14:553:-32.0482,0,-145.056 0/0:95:88,7:88:3469:7:286:0,-2.48303,-286.144 dDocent_Contig_771 24 . C A 207.018 . AB=0.136;ABP=146.866;AC=2;AF=0.333333;AN=6;AO=18;CIGAR=1X;DP=144;DPB=144;DPRA=0;EPP=42.0968;EPPR=276.616;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=6.93889e-18;PAIRED=0.833333;PAIREDR=0.936508;PAO=0;PQA=0;PQR=0;PRO=0;QA=713;QR=4909;RO=126;RPL=0;RPP=42.0968;RPPR=276.616;RPR=18;RUN=1;SAF=18;SAP=42.0968;SAR=0;SRF=126;SRP=276.616;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:82:69,13:69:2662:13:517:-22.1913,0,-215.035 0/0:19:18,1:18:711:1:41:0,-1.625,-60.2225 0/1:43:39,4:39:1536:4:155:-1.37897,0,-125.546 dDocent_Contig_773 26 . G A 5619.75 . AB=0.0942623;ABP=351.905;AC=3;AF=0.5;AN=6;AO=23;CIGAR=1X4M;DP=244;DPB=244;DPRA=0;EPP=52.9542;EPPR=87.6977;GTI=0;LEN=1;MEANALT=3;MQM=60;MQMR=60;NS=3;NUMALT=2;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=898;QR=1535;RO=39;RPL=0;RPP=52.9542;RPPR=87.6977;RPR=23;RUN=1;SAF=23;SAP=52.9542;SAR=0;SRF=39;SRP=87.6977;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|1:129:19,97,12:19:755:97,12:3856,481:-311.745,0,-32.9594,-277.837,-22.5297,-336.383 0|1:54:7,43,3:7:277:43,3:1642,121:-132.575,0,-9.84745,-124.707,-12.8159,-146.603 0|1:61:13,39,8:13:503:39,8:1544,296:-123.178,0,-29.5783,-102.889,-17.1179,-141.788 dDocent_Contig_774 13 . G A 231.782 . AB=0.183099;ABP=64.9431;AC=2;AF=0.333333;AN=6;AO=13;CIGAR=1X;DP=84;DPB=84;DPRA=2.73077;EPP=31.2394;EPPR=157.185;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=516;QR=2802;RO=71;RPL=0;RPP=31.2394;RPPR=157.185;RPR=13;RUN=1;SAF=13;SAP=31.2394;SAR=0;SRF=71;SRP=157.185;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:47:43,4:43:1701:4:162:-0.818336,0,-139.168 0/0:13:13,0:13:513:0:0:0,-3.91339,-46.5149 0/1:24:15,9:15:588:9:354:-24.9927,0,-46.0349 dDocent_Contig_775 9 . T A 650.834 . AB=0.192708;ABP=160.487;AC=3;AF=0.5;AN=6;AO=37;CIGAR=1X;DP=192;DPB=192;DPRA=0;EPP=83.3548;EPPR=339.589;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=1415;QR=5870;RO=155;RPL=0;RPP=83.3548;RPPR=339.589;RPR=37;RUN=1;SAF=37;SAP=83.3548;SAR=0;SRF=155;SRP=339.589;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:139:109,30:109:4110:30:1144:-61.4169,0,-328.152 0/1:21:18,3:18:698:3:116:-4.49607,0,-56.8326 0/1:32:28,4:28:1062:4:155:-4.69248,0,-86.2507 dDocent_Contig_777 105 . N G 192.742 . AB=0;ABP=0;AC=4;AF=1;AN=4;AO=8;CIGAR=3X;DP=8;DPB=8;DPRA=0;EPP=20.3821;EPPR=0;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=0;NS=2;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=205;QR=0;RO=0;RPL=0;RPP=20.3821;RPPR=0;RPR=8;RUN=1;SAF=0;SAP=20.3821;SAR=8;SRF=0;SRP=0;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 1|1:6:0,6:0:0:6:150:-13.7482,-1.80618,0 .:.:.:.:.:.:.:. 1|1:2:0,2:0:0:2:55:-5.22438,-0.60206,0 dDocent_Contig_778 82 . G A 667.727 . AB=0.3;ABP=41.2282;AC=3;AF=0.5;AN=6;AO=33;CIGAR=1X;DP=110;DPB=110;DPRA=0;EPP=74.6689;EPPR=170.214;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=1160;QR=2662;RO=77;RPL=33;RPP=74.6689;RPPR=170.214;RPR=0;RUN=1;SAF=33;SAP=74.6689;SAR=0;SRF=77;SRP=170.214;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:60:41,19:41:1417:19:672:-42.7455,0,-109.767 0/1:25:19,6:19:654:6:214:-12.0821,0,-51.6569 0/1:25:17,8:17:591:8:274:-17.468,0,-45.9917 dDocent_Contig_779 8 . G A 690.436 . AB=0.383562;ABP=11.607;AC=3;AF=0.5;AN=6;AO=28;CIGAR=1X;DP=73;DPB=73;DPRA=0;EPP=63.8115;EPPR=100.727;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=1061;QR=1724;RO=45;RPL=0;RPP=63.8115;RPPR=100.727;RPR=28;RUN=1;SAF=28;SAP=63.8115;SAR=0;SRF=45;SRP=100.727;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:22:17,5:17:655:5:186:-10.4763,0,-52.664 0/1:27:10,17:10:377:17:653:-50.9793,0,-26.1525 0/1:24:18,6:18:692:6:222:-13.1109,0,-55.3885 dDocent_Contig_780 39 . C T 2383.78 . AB=0.636364;ABP=22.5536;AC=3;AF=0.5;AN=6;AO=77;CIGAR=1X;DP=121;DPB=121;DPRA=0;EPP=170.214;EPPR=98.5551;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=3105;QR=1766;RO=44;RPL=0;RPP=170.214;RPPR=98.5551;RPR=77;RUN=1;SAF=77;SAP=170.214;SAR=0;SRF=44;SRP=98.5551;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:66:22,44:22:890:44:1774:-140,0,-60.5392 0/1:9:6,3:6:240:3:123:-8.75552,0,-19.2646 0/1:46:16,30:16:636:30:1208:-95.1455,0,-43.7254 dDocent_Contig_781 8 . G A 762.76 . AB=0.214286;ABP=132.058;AC=3;AF=0.5;AN=6;AO=39;CIGAR=1X;DP=182;DPB=182;DPRA=0;EPP=87.6977;EPPR=313.531;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=1506;QR=5497;RO=143;RPL=0;RPP=87.6977;RPPR=313.531;RPR=39;RUN=1;SAF=39;SAP=87.6977;SAR=0;SRF=143;SRP=313.531;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:98:78,20:78:3009:20:768:-39.9463,0,-241.471 0/1:37:32,5:32:1218:5:194:-6.69473,0,-98.7779 0/1:47:33,14:33:1270:14:544:-35.1578,0,-100.44 dDocent_Contig_782 63 . T C 140.041 . AB=0.241379;ABP=19.8579;AC=2;AF=0.333333;AN=6;AO=8;CIGAR=1X;DP=78;DPB=78;DPRA=0;EPP=20.3821;EPPR=155.013;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=324;QR=2551;RO=70;RPL=8;RPP=20.3821;RPPR=155.013;RPR=0;RUN=1;SAF=8;SAP=20.3821;SAR=0;SRF=70;SRP=155.013;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:49:48,1:48:1765:1:41:0,-10.6559,-155.005 0/1:14:9,5:9:318:5:203:-14.4386,0,-24.7431 0/1:15:13,2:13:468:2:80:-3.07634,0,-37.9358 dDocent_Contig_783 34 . G T 117.85 . AB=0.2;ABP=26.4622;AC=1;AF=0.166667;AN=6;AO=6;CIGAR=1X;DP=75;DPB=75;DPRA=1.33333;EPP=16.0391;EPPR=152.842;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=244;QR=2777;RO=69;RPL=0;RPP=16.0391;RPPR=152.842;RPR=6;RUN=1;SAF=6;SAP=16.0391;SAR=0;SRF=69;SRP=152.842;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:30:24,6:24:958:6:244:-13.3079,0,-77.4857 0/0:18:18,0:18:729:0:0:0,-5.41854,-65.9347 0/0:27:27,0:27:1090:0:0:0,-8.12781,-98.3837 dDocent_Contig_784 9 . T C 80.1185 . AB=0.142857;ABP=65.0524;AC=2;AF=0.333333;AN=6;AO=11;CIGAR=1X1M1X;DP=151;DPB=151;DPRA=0;EPP=26.8965;EPPR=304.845;GTI=0;LEN=1;MEANALT=1.33333;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=428;QR=5210;RO=139;RPL=0;RPP=26.8965;RPPR=304.845;RPR=11;RUN=1;SAF=11;SAP=26.8965;SAR=0;SRF=139;SRP=304.845;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|0:95:92,3:92:3458:3:120:0,-17.4099,-300.176 0|1:19:15,3:15:565:3:115:-4.93236,0,-45.399 0|1:37:32,5:32:1187:5:193:-6.60219,0,-95.986 dDocent_Contig_785 98 . N A 62.694 . AB=0;ABP=0;AC=2;AF=1;AN=2;AO=2;CIGAR=1X;DP=2;DPB=2;DPRA=0;EPP=7.35324;EPPR=0;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=0;NS=1;NUMALT=1;ODDS=5.99146;PAIRED=1;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=66;QR=0;RO=0;RPL=2;RPP=7.35324;RPPR=0;RPR=0;RUN=1;SAF=2;SAP=7.35324;SAR=0;SRF=0;SRP=0;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 1/1:2:0,2:0:0:2:66:-6.26831,-0.60206,0 ./.:.:.:.:.:.:.:. ./.:.:.:.:.:.:.:. dDocent_Contig_786 24 . G A 24614.4 . AB=0.677281;ABP=320.217;AC=3;AF=0.5;AN=6;AO=787;CIGAR=1X;DP=1162;DPB=1162;DPRA=0;EPP=1711.96;EPPR=812.97;GTI=0;LEN=1;MEANALT=1.33333;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=0.975871;PAO=0;PQA=0;PQR=0;PRO=0;QA=31315;QR=14892;RO=373;RPL=0;RPP=1711.96;RPPR=812.97;RPR=787;RUN=1;SAF=787;SAP=1711.96;SAR=0;SRF=373;SRP=812.97;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:680:209,469:209:8346:469:18728:-1479.69,0,-546.356 0/1:169:75,94:75:2984:94:3710:-283.059,0,-217.787 0/1:313:89,224:89:3562:224:8877:-704.216,0,-226.391 dDocent_Contig_787 10 . G A 696.024 . AB=0.267241;ABP=57.5966;AC=3;AF=0.5;AN=6;AO=31;CIGAR=3X;DP=116;DPB=116;DPRA=0;EPP=70.3259;EPPR=187.585;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=1211;QR=3307;RO=85;RPL=0;RPP=70.3259;RPPR=187.585;RPR=31;RUN=1;SAF=31;SAP=70.3259;SAR=0;SRF=85;SRP=187.585;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|1:44:37,7:37:1427:7:257:-10.2354,0,-115.45 0|1:28:21,7:21:820:7:277:-16.8716,0,-65.6931 0|1:44:27,17:27:1060:17:677:-48.0182,0,-82.4555 dDocent_Contig_789 79 . G A 448.026 . AB=0.171717;ABP=188.353;AC=2;AF=0.333333;AN=6;AO=36;CIGAR=1X;DP=277;DPB=277;DPRA=0;EPP=81.1833;EPPR=526.335;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=1.38778e-17;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=1262;QR=8449;RO=241;RPL=36;RPP=81.1833;RPPR=526.335;RPR=0;RUN=1;SAF=36;SAP=81.1833;SAR=0;SRF=241;SRP=526.335;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:167:138,29:138:4884:29:1021:-41.931,0,-389.449 0/1:31:26,5:26:914:5:171:-6.39446,0,-73.2453 0/0:79:77,2:77:2651:2:70:0,-17.134,-232.2 dDocent_Contig_790 13 . G A 590.602 . AB=0.144876;ABP=313.009;AC=2;AF=0.333333;AN=6;AO=41;CIGAR=1X;DP=321;DPB=321;DPRA=3.72368;EPP=92.0407;EPPR=611.023;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=1635;QR=11110;RO=280;RPL=0;RPP=92.0407;RPPR=611.023;RPR=41;RUN=1;SAF=41;SAP=92.0407;SAR=0;SRF=280;SRP=611.023;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:172:148,24:148:5892:24:949:-33.9288,0,-478.3 0/0:38:38,0:38:1509:0:0:0,-11.4391,-136.053 0/1:111:94,17:94:3709:17:686:-28.6543,0,-300.423 dDocent_Contig_791 151 . C G 828.423 . AB=0.336735;ABP=25.7;AC=3;AF=0.5;AN=6;AO=33;CIGAR=1X;DP=98;DPB=98;DPRA=0;EPP=74.6689;EPPR=144.156;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=1298;QR=2539;RO=65;RPL=0;RPP=74.6689;RPPR=144.156;RPR=33;RUN=1;SAF=0;SAP=74.6689;SAR=33;SRF=0;SRP=144.156;SRR=65;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:48:29,19:29:1123:19:750:-53.3719,0,-86.8932 0/1:25:15,10:15:601:10:393:-28.1964,0,-46.9022 0/1:25:21,4:21:815:4:155:-6.7969,0,-66.1319 dDocent_Contig_792 54 . T G 1273.17 . AB=0.536585;ABP=3.96363;AC=3;AF=0.5;AN=6;AO=44;CIGAR=1X;DP=82;DPB=82;DPRA=0;EPP=98.5551;EPPR=85.5263;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=1739;QR=1520;RO=38;RPL=44;RPP=98.5551;RPPR=85.5263;RPR=0;RUN=1;SAF=44;SAP=98.5551;SAR=0;SRF=38;SRP=85.5263;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:54:25,29:25:995:29:1133:-85.9863,0,-73.5867 0/1:13:6,7:6:243:7:284:-22.0206,0,-18.3348 0/1:15:7,8:7:282:8:322:-24.8329,0,-21.2375 dDocent_Contig_793 41 . G T 566.661 . AB=0.236364;ABP=69.4179;AC=2;AF=0.333333;AN=6;AO=28;CIGAR=1X;DP=144;DPB=144;DPRA=0;EPP=63.8115;EPPR=254.901;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=6.93889e-18;PAIRED=1;PAIREDR=0.982759;PAO=0;PQA=0;PQR=0;PRO=0;QA=1110;QR=4538;RO=116;RPL=0;RPP=63.8115;RPPR=254.901;RPR=28;RUN=1;SAF=28;SAP=63.8115;SAR=0;SRF=116;SRP=254.901;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:60:43,17:43:1657:17:673:-42.8386,0,-131.303 0/1:50:41,9:41:1623:9:356:-17.3504,0,-131.261 0/0:34:32,2:32:1258:2:81:0,-2.54929,-105.807 dDocent_Contig_794 35 . A C 65.9413 . AB=0.147059;ABP=39.7976;AC=1;AF=0.166667;AN=6;AO=6;CIGAR=1X;DP=103;DPB=103;DPRA=1.16129;EPP=16.0391;EPPR=213.643;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=243;QR=3848;RO=97;RPL=0;RPP=16.0391;RPPR=213.643;RPR=6;RUN=1;SAF=6;SAP=16.0391;SAR=0;SRF=97;SRP=213.643;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:38:37,1:37:1469:1:40:0,-7.44346,-128.46 0/1:34:29,5:29:1161:5:203:-8.41804,0,-94.5334 0/0:31:31,0:31:1218:0:0:0,-9.33193,-109.897 dDocent_Contig_795 88 . C T 328.621 . AB=0.180556;ABP=130.645;AC=3;AF=0.5;AN=6;AO=26;CIGAR=1X;DP=144;DPB=144;DPRA=0;EPP=59.4686;EPPR=259.244;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=897;QR=4055;RO=118;RPL=26;RPP=59.4686;RPPR=259.244;RPR=0;RUN=1;SAF=26;SAP=59.4686;SAR=0;SRF=118;SRP=259.244;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:69:53,16:53:1831:16:555:-29.5072,0,-144.304 0/1:17:14,3:14:456:3:103:-4.49251,0,-36.2333 0/1:58:51,7:51:1768:7:239:-4.38419,0,-141.947 dDocent_Contig_796 17 . T A 10636 . AB=0.842294;ABP=286.944;AC=4;AF=0.666667;AN=6;AO=333;CIGAR=1X;DP=384;DPB=384;DPRA=0;EPP=726.111;EPPR=111.584;GTI=0;LEN=1;MEANALT=1.33333;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=13078;QR=1982;RO=50;RPL=0;RPP=726.111;RPPR=111.584;RPR=333;RUN=1;SAF=333;SAP=726.111;SAR=0;SRF=50;SRP=111.584;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:204:30,174:30:1189:174:6811:-551.303,0,-45.8832 0/1:75:13,61:13:509:61:2411:-194.705,0,-23.7015 1/1:105:7,98:7:284:98:3856:-321.117,-5.67416,0 dDocent_Contig_797 99 . T G 4125.41 . AB=0.0326567;ABP=2152.41;AC=0;AF=0;AN=6;AO=37;CIGAR=1M2X1M1X1M;DP=1133;DPB=1137.67;DPRA=0;EPP=52.3673;EPPR=1162.58;GTI=0;LEN=1;MEANALT=19.6667;MQM=45.1351;MQMR=58.4944;NS=3;NUMALT=3;ODDS=2.22045e-16;PAIRED=0.972973;PAIREDR=0.722846;PAO=4.25;PQA=141.75;PQR=308.75;PRO=9.25;QA=1445;QR=20966;RO=534;RPL=4;RPP=52.3673;RPPR=1085.72;RPR=33;RUN=1;SAF=0;SAP=83.3548;SAR=37;SRF=9;SRP=1085.72;SRR=525;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|0:373:153,3,55,60:153:6026:3,55,60:119,2150,2374:-146.773,-186.123,-679.416,-23.4624,-510.952,-501.102,0,-487.492,-324.831,-476.137 0|0:382:176,20,39,60:176:6867:20,39,60:770,1521,2368:-141.57,-132.889,-681.992,-76.091,-569.551,-619.474,0,-493.463,-436.664,-537.064 0|0:378:205,14,33,59:205:8073:14,33,59:556,1301,2329:-129.721,-147.079,-802.382,-95.1165,-710.28,-744.698,0,-615.174,-563.21,-641.766 dDocent_Contig_799 10 . C G 1041.49 . AB=0.244898;ABP=113.8;AC=2;AF=0.333333;AN=6;AO=50;CIGAR=1X;DP=222;DPB=222;DPRA=0;EPP=111.584;EPPR=376.504;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=0.947674;PAO=0;PQA=0;PQR=0;PRO=0;QA=1921;QR=6756;RO=172;RPL=0;RPP=111.584;RPPR=376.504;RPR=50;RUN=1;SAF=50;SAP=111.584;SAR=0;SRF=172;SRP=376.504;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:124:104,20:104:4083:20:760:-31.3959,0,-330.165 0/0:26:24,2:24:938:2:76:0,-0.611969,-77.5142 0/1:72:44,28:44:1735:28:1085:-76.2756,0,-134.707 dDocent_Contig_801 38 . G A 402.448 . AB=0.135371;ABP=267.465;AC=2;AF=0.333333;AN=6;AO=36;CIGAR=1X;DP=302;DPB=302;DPRA=0;EPP=81.1833;EPPR=578.45;GTI=0;LEN=1;MEANALT=1.33333;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=1450;QR=10487;RO=265;RPL=0;RPP=81.1833;RPPR=578.45;RPR=36;RUN=1;SAF=36;SAP=81.1833;SAR=0;SRF=265;SRP=578.45;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:171:151,19:151:5949:19:759:-17.046,0,-483.62 0/1:58:46,12:46:1824:12:487:-26.7217,0,-146.921 0/0:73:68,5:68:2714:5:204:0,-3.23116,-225.637 dDocent_Contig_802 112 . A C 67.6321 . AB=0.147541;ABP=68.8308;AC=2;AF=0.333333;AN=6;AO=9;CIGAR=1X;DP=70;DPB=70;DPRA=3.38889;EPP=22.5536;EPPR=128.956;GTI=0;LEN=1;MEANALT=1.5;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=0;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=307;QR=1958;RO=58;RPL=0;RPP=22.5536;RPPR=128.956;RPR=9;RUN=1;SAF=0;SAP=22.5536;SAR=9;SRF=0;SRP=128.956;SRR=58;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:48:39,7:39:1314:7:243:-8.03191,0,-104.385 0/0:9:8,0:8:264:0:0:0,-2.40824,-23.7611 0/1:13:11,2:11:380:2:64:-2.16498,0,-30.6194 dDocent_Contig_803 98 . N G 70.9132 . AB=0;ABP=0;AC=2;AF=1;AN=2;AO=3;CIGAR=1X;DP=3;DPB=3;DPRA=0;EPP=9.52472;EPPR=0;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=0;NS=1;NUMALT=1;ODDS=6.68461;PAIRED=1;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=76;QR=0;RO=0;RPL=3;RPP=9.52472;RPPR=0;RPR=0;RUN=1;SAF=3;SAP=9.52472;SAR=0;SRF=0;SRP=0;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL ./.:.:.:.:.:.:.:. 1/1:3:0,3:0:0:3:76:-7.09077,-0.90309,0 ./.:.:.:.:.:.:.:. dDocent_Contig_804 1 . N G 97.8143 . AB=0;ABP=0;AC=2;AF=1;AN=2;AO=3;CIGAR=1X;DP=3;DPB=3;DPRA=0;EPP=9.52472;EPPR=0;GTI=0;LEN=1;MEANALT=1;MQM=53;MQMR=0;NS=1;NUMALT=1;ODDS=6.68461;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=105;QR=0;RO=0;RPL=0;RPP=9.52472;RPPR=0;RPR=3;RUN=1;SAF=0;SAP=9.52472;SAR=3;SRF=0;SRP=0;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL ./.:.:.:.:.:.:.:. 1/1:3:0,3:0:0:3:105:-9.78088,-0.90309,0 ./.:.:.:.:.:.:.:. dDocent_Contig_805 7 . T G 2508.55 . AB=0.350725;ABP=69.7847;AC=3;AF=0.5;AN=6;AO=121;CIGAR=1X;DP=345;DPB=345;DPRA=0;EPP=265.758;EPPR=467.705;GTI=0;LEN=1;MEANALT=2;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=3973;QR=8013;RO=214;RPL=0;RPP=265.758;RPPR=467.705;RPR=121;RUN=1;SAF=121;SAP=265.758;SAR=0;SRF=214;SRP=467.705;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:167:111,50:111:4198:50:1533:-89.3677,0,-329.05 0/1:83:42,40:42:1548:40:1397:-100.932,0,-114.509 0/1:95:61,31:61:2267:31:1043:-66.0783,0,-176.16 dDocent_Contig_806 47 . A C 773.894 . AB=0.16129;ABP=281.029;AC=2;AF=0.333333;AN=6;AO=49;CIGAR=1X;DP=350;DPB=350;DPRA=0;EPP=109.412;EPPR=641.423;GTI=0;LEN=1;MEANALT=1.66667;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=0.996599;PAO=0;PQA=0;PQR=0;PRO=0;QA=1973;QR=11571;RO=294;RPL=0;RPP=109.412;RPPR=641.423;RPR=49;RUN=1;SAF=49;SAP=109.412;SAR=0;SRF=294;SRP=641.423;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:227:201,20:201:7931:20:795:-4.94166,0,-646.456 0/1:52:26,25:26:1021:25:1016:-75.9704,0,-76.4266 0/0:71:67,4:67:2619:4:162:0,-6.40617,-220.883 dDocent_Contig_807 71 . C T 94.7531 . AB=0.206897;ABP=24.6501;AC=2;AF=0.333333;AN=6;AO=9;CIGAR=1X;DP=77;DPB=77;DPRA=0;EPP=22.5536;EPPR=150.67;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=3.46945e-18;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=340;QR=2493;RO=68;RPL=9;RPP=22.5536;RPPR=150.67;RPR=0;RUN=1;SAF=9;SAP=22.5536;SAR=0;SRF=68;SRP=150.67;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:48:45,3:45:1675:3:117:0,-3.53906,-140.103 0/1:10:9,1:9:315:1:38:-0.786969,0,-25.6674 0/1:19:14,5:14:503:5:185:-11.2904,0,-39.8856 dDocent_Contig_808 15 . A T 3630.35 . AB=0.037594;ABP=744.038;AC=1;AF=0.166667;AN=6;AO=15;CIGAR=1M6I2X1M1X1M2X1M;DP=399;DPB=407.222;DPRA=0;EPP=35.5824;EPPR=96.3836;GTI=0;LEN=1;MEANALT=12.3333;MQM=26;MQMR=60;NS=3;NUMALT=5;ODDS=0;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=390;QR=1698;RO=43;RPL=0;RPP=35.5824;RPPR=96.3836;RPR=15;RUN=1;SAF=15;SAP=35.5824;SAR=0;SRF=43;SRP=96.3836;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|0:214:27,36,6,46,14,63:27:1071:36,6,46,14,63:1416,156,1834,541,1826:-158.758,-50.9505,-128.294,-156.277,-128.522,-242.645,-40.1204,-12.3639,-117.692,-114.453,-148.496,-120.742,-226.062,-109.913,-232.456,-38.5782,-10.8235,-116.148,0,-108.371,-107.79 0|0:72:6,9,4,15,7,27:6:234:9,4,15,7,27:340,104,598,276,817:-80.4372,-54.6455,-71.1815,-75.1733,-66.8207,-93.2122,-40.7704,-32.4161,-52.9473,-55.5014,-69.4973,-61.1447,-81.6714,-47.2716,-86.6332,-22.2261,-13.8724,-34.4066,0,-28.7341,-33.3448 1|0:113:10,26,5,21,2,37:10:393:26,5,21,2,37:1019,130,845,73,1170:-129.363,-49.43,-73.9397,-123.536,-72.9286,-154.362,-73.3309,-22.7183,-96.8277,-99.3434,-129.756,-79.1485,-153.249,-103.047,-161.485,-50.6086,0,-74.1064,-23.9059,-80.3243,-71.8025 dDocent_Contig_809 87 . G A 31.0749 . AB=0.111111;ABP=26.6552;AC=0;AF=0;AN=6;AO=3;CIGAR=2X2M;DP=114;DPB=116;DPRA=0.575472;EPP=9.52472;EPPR=224.5;GTI=0;LEN=1;MEANALT=2.5;MQM=60;MQMR=60;NS=3;NUMALT=2;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=105;QR=3506;RO=102;RPL=3;RPP=9.52472;RPPR=224.5;RPR=0;RUN=1;SAF=3;SAP=9.52472;SAR=0;SRF=102;SRP=224.5;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|0:53:50,3,0:50:1703:3,0:103,0:0,-6.34462,-143.947,-15.0515,-144.85,-153.214 0|0:18:12,3,2:12:416:3,2:105,70:-4.93085,0,-32.9077,-2.84774,-28.1149,-36.0566 0|0:43:40,2,1:40:1387:2,1:64,35:0,-6.90449,-119.041,-9.18349,-116.796,-121.65 dDocent_Contig_810 17 . C A 60.2854 . AB=0.25;ABP=9.52472;AC=1;AF=0.166667;AN=6;AO=3;CIGAR=1X;DP=53;DPB=53;DPRA=0.585366;EPP=9.52472;EPPR=109.412;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=123;QR=1980;RO=49;RPL=0;RPP=9.52472;RPPR=109.412;RPR=3;RUN=1;SAF=3;SAP=9.52472;SAR=0;SRF=49;SRP=109.412;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:35:34,0:34:1367:0:0:0,-10.235,-122.882 0/0:6:6,0:6:246:0:0:0,-1.80618,-22.5201 0/1:12:9,3:9:367:3:123:-7.85243,0,-29.7829 dDocent_Contig_811 199 . G T 113.245 . AB=0.21875;ABP=24.9965;AC=2;AF=0.333333;AN=6;AO=8;CIGAR=1X;DP=52;DPB=52;DPRA=0;EPP=20.3821;EPPR=98.5551;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=299;QR=1703;RO=44;RPL=8;RPP=20.3821;RPPR=98.5551;RPR=0;RUN=1;SAF=0;SAP=20.3821;SAR=8;SRF=0;SRP=98.5551;SRR=44;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:25:20,5:20:779:5:194:-10.3071,0,-62.9122 0/1:7:5,2:5:190:2:70:-4.53991,0,-15.36 0/0:20:19,1:19:734:1:35:0,-2.52197,-62.8922 dDocent_Contig_812 34 . A C 701.415 . AB=0.0392157;ABP=567.338;AC=0;AF=0;AN=6;AO=12;CIGAR=1X3M1X1M1X3M1X1M;DP=306;DPB=304.667;DPRA=0;EPP=29.068;EPPR=500.277;GTI=0;LEN=1;MEANALT=4.66667;MQM=52;MQMR=60;NS=3;NUMALT=3;ODDS=0;PAIRED=0;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=437;QR=8943;RO=229;RPL=0;RPP=29.068;RPPR=500.277;RPR=12;RUN=1;SAF=12;SAP=29.068;SAR=0;SRF=229;SRP=500.277;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|0:158:113,7,13,21:113:4443:7,13,21:250,497,847:-35.8125,-49.5175,-412.86,-29.0653,-374.202,-390.604,0,-345.149,-324.698,-359.143 0|0:44:36,3,0,4:36:1389:3,0,4:111,0,164:-2.71546,-4.58431,-117.717,-13.5525,-118.62,-127.603,0,-105.081,-114.064,-112.86 0|0:104:80,2,2,19:80:3111:2,2,19:76,78,744:-37.1094,-54.9738,-310.016,-54.7803,-304.207,-309.824,0,-249.451,-249.258,-249.95 dDocent_Contig_813 13 . C T 1463.94 . AB=0.287129;ABP=82.5163;AC=3;AF=0.5;AN=6;AO=58;CIGAR=1X;DP=202;DPB=202;DPRA=0;EPP=128.956;EPPR=315.702;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=2353;QR=5781;RO=144;RPL=0;RPP=128.956;RPPR=315.702;RPR=58;RUN=1;SAF=58;SAP=128.956;SAR=0;SRF=144;SRP=315.702;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:136:88,48:88:3508:48:1947:-134.478,0,-274.816 0/1:24:21,3:21:848:3:122:-4.14777,0,-69.4067 0/1:42:35,7:35:1425:7:284:-13.2902,0,-115.852 dDocent_Contig_814 37 . G T 428.002 . AB=0.182482;ABP=122.98;AC=3;AF=0.5;AN=6;AO=25;CIGAR=1X;DP=137;DPB=137;DPRA=0;EPP=57.2971;EPPR=246.215;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=6.93889e-18;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=983;QR=4443;RO=112;RPL=0;RPP=57.2971;RPPR=246.215;RPR=25;RUN=1;SAF=25;SAP=57.2971;SAR=0;SRF=112;SRP=246.215;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:76:60,16:60:2395:16:622:-33.4308,0,-192.826 0/1:18:14,4:14:550:4:161:-9.45694,0,-44.4227 0/1:43:38,5:38:1498:5:200:-5.43525,0,-122.132 dDocent_Contig_815 121 . T C 761.4 . AB=0.300813;ABP=45.3981;AC=1;AF=0.166667;AN=6;AO=44;CIGAR=1X;DP=220;DPB=220;DPRA=0;EPP=98.5551;EPPR=385.189;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=1.38778e-17;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=1511;QR=6140;RO=176;RPL=0;RPP=98.5551;RPPR=385.189;RPR=44;RUN=1;SAF=0;SAP=98.5551;SAR=44;SRF=0;SRP=385.189;SRR=176;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:123:86,37:86:3006:37:1271:-77.6628,0,-233.741 0/0:22:21,1:21:702:1:35:0,-3.12403,-59.9886 0/0:75:69,6:69:2432:6:205:0,-3.79226,-200.351 dDocent_Contig_816 30 . T C 2851.2 . AB=0.42437;ABP=14.8348;AC=3;AF=0.5;AN=6;AO=101;CIGAR=1X;DP=238;DPB=238;DPRA=0;EPP=222.329;EPPR=300.502;GTI=0;LEN=1;MEANALT=1;MQM=59.802;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=4017;QR=4960;RO=137;RPL=0;RPP=222.329;RPPR=300.502;RPR=101;RUN=1;SAF=101;SAP=222.329;SAR=0;SRF=137;SRP=300.502;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:137:84,53:84:3005:53:2121:-149.805,0,-229.392 0/1:37:23,14:23:862:14:557:-39.3349,0,-66.7571 0/1:64:30,34:30:1093:34:1339:-101.503,0,-79.4071 dDocent_Contig_817 21 . A C 813.55 . AB=0.43662;ABP=5.48761;AC=3;AF=0.5;AN=6;AO=31;CIGAR=1X;DP=71;DPB=71;DPRA=0;EPP=70.3259;EPPR=89.8692;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=0;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=1191;QR=1532;RO=40;RPL=0;RPP=70.3259;RPPR=89.8692;RPR=31;RUN=1;SAF=31;SAP=70.3259;SAR=0;SRF=40;SRP=89.8692;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:36:23,13:23:879:13:509:-35.3211,0,-68.5887 0/1:8:6,2:6:229:2:79:-5.08939,0,-18.5671 0/1:27:11,16:11:424:16:603:-46.4672,0,-30.3849 dDocent_Contig_818 116 . A G 144.184 . AB=0.388889;ABP=4.9405;AC=1;AF=0.166667;AN=6;AO=7;CIGAR=1X;DP=72;DPB=72;DPRA=0.666667;EPP=18.2106;EPPR=141.985;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=0;PAIREDR=0.984375;PAO=0;PQA=0;PQR=0;PRO=0;QA=237;QR=1668;RO=64;RPL=0;RPP=18.2106;RPPR=141.985;RPR=7;RUN=1;SAF=0;SAP=18.2106;SAR=7;SRF=0;SRP=141.985;SRR=64;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:46:46,0:46:1170:0:0:0,-13.8474,-105.538 0/0:8:7,0:7:177:0:0:0,-2.10721,-16.0881 0/1:18:11,7:11:321:7:237:-16.2423,0,-23.7578 dDocent_Contig_819 55 . C T 158.757 . AB=0.141304;ABP=105.825;AC=2;AF=0.333333;AN=6;AO=13;CIGAR=1X;DP=109;DPB=109;DPRA=2.70588;EPP=31.2394;EPPR=211.472;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=515;QR=3860;RO=96;RPL=13;RPP=31.2394;RPPR=211.472;RPR=0;RUN=1;SAF=13;SAP=31.2394;SAR=0;SRF=96;SRP=211.472;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:67:58,9:58:2328:9:356:-12.2323,0,-189.508 0/0:17:17,0:17:683:0:0:0,-5.11751,-61.7974 0/1:25:21,4:21:849:4:159:-7.1662,0,-69.1939 dDocent_Contig_820 10 . A T 841.874 . AB=0.227273;ABP=116.716;AC=3;AF=0.5;AN=6;AO=40;CIGAR=1X;DP=176;DPB=176;DPRA=0;EPP=89.8692;EPPR=298.331;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=0.992647;PAO=0;PQA=0;PQR=0;PRO=0;QA=1574;QR=5296;RO=136;RPL=0;RPP=89.8692;RPPR=298.331;RPR=40;RUN=1;SAF=40;SAP=89.8692;SAR=0;SRF=136;SRP=298.331;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:101:76,25:76:2972:25:990:-58.9998,0,-237.207 0/1:39:30,9:30:1165:9:347:-19.845,0,-93.4004 0/1:36:30,6:30:1159:6:237:-10.8655,0,-93.7646 dDocent_Contig_821 8 . G C 111.028 . AB=0.115942;ABP=179.812;AC=2;AF=0.333333;AN=6;AO=35;CIGAR=1X;DP=390;DPB=390;DPRA=0;EPP=79.0118;EPPR=773.883;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=1354;QR=13561;RO=355;RPL=0;RPP=79.0118;RPPR=773.883;RPR=35;RUN=1;SAF=35;SAP=79.0118;SAR=0;SRF=355;SRP=773.883;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:252:233,19:233:8919:19:738:0,-9.10845,-735.692 0/1:47:42,5:42:1591:5:192:-3.5016,0,-129.309 0/1:91:80,11:80:3051:11:424:-11.1195,0,-247.359 dDocent_Contig_822 107 . N A 61.7461 . AB=0;ABP=0;AC=2;AF=1;AN=2;AO=2;CIGAR=1X;DP=2;DPB=2;DPRA=0;EPP=7.35324;EPPR=0;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=0;NS=1;NUMALT=1;ODDS=5.99146;PAIRED=1;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=65;QR=0;RO=0;RPL=0;RPP=7.35324;RPPR=0;RPR=2;RUN=1;SAF=0;SAP=7.35324;SAR=2;SRF=0;SRP=0;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 1/1:2:0,2:0:0:2:65:-6.17353,-0.60206,0 ./.:.:.:.:.:.:.:. ./.:.:.:.:.:.:.:. dDocent_Contig_823 28 . G A 479.592 . AB=0.2625;ABP=42.2054;AC=2;AF=0.333333;AN=6;AO=21;CIGAR=1X2M1X2M1X;DP=88;DPB=88;DPRA=5;EPP=48.6112;EPPR=146.327;GTI=0;LEN=1;MEANALT=1.5;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=831;QR=2501;RO=66;RPL=0;RPP=48.6112;RPPR=146.327;RPR=21;RUN=1;SAF=21;SAP=48.6112;SAR=0;SRF=66;SRP=146.327;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|1:47:32,14:32:1176:14:553:-36.0264,0,-92.0439 0|0:8:8,0:8:312:0:0:0,-2.40824,-28.4434 0|1:33:26,7:26:1013:7:278:-15.4556,0,-81.5378 dDocent_Contig_824 10 . A T 838.697 . AB=0.163522;ABP=315.73;AC=3;AF=0.5;AN=6;AO=52;CIGAR=1X;DP=318;DPB=318;DPRA=0;EPP=115.927;EPPR=580.622;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=1.38778e-17;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=2046;QR=10342;RO=266;RPL=0;RPP=115.927;RPPR=580.622;RPR=52;RUN=1;SAF=52;SAP=115.927;SAR=0;SRF=266;SRP=580.622;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:190:154,36:154:6004:36:1414:-70.3177,0,-483.052 0/1:58:52,6:52:2010:6:227:-3.33029,0,-163.659 0/1:70:60,10:60:2328:10:405:-15.7379,0,-188.645 dDocent_Contig_825 107 . N T 82.118 . AB=0;ABP=0;AC=2;AF=1;AN=2;AO=3;CIGAR=1X;DP=3;DPB=3;DPRA=0;EPP=9.52472;EPPR=0;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=0;NS=1;NUMALT=1;ODDS=6.68461;PAIRED=1;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=88;QR=0;RO=0;RPL=0;RPP=9.52472;RPPR=0;RPR=3;RUN=1;SAF=0;SAP=9.52472;SAR=3;SRF=0;SRP=0;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 1/1:3:0,3:0:0:3:88:-8.21126,-0.90309,0 ./.:.:.:.:.:.:.:. ./.:.:.:.:.:.:.:. dDocent_Contig_826 22 . G A 76.6915 . AB=0.111111;ABP=109.412;AC=1;AF=0.166667;AN=6;AO=10;CIGAR=1X;DP=113;DPB=113;DPRA=3.84615;EPP=24.725;EPPR=226.672;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=0.990291;PAO=0;PQA=0;PQR=0;PRO=0;QA=404;QR=4154;RO=103;RPL=0;RPP=24.725;RPPR=226.672;RPR=10;RUN=1;SAF=10;SAP=24.725;SAR=0;SRF=103;SRP=226.672;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:81:72,9:72:2906:9:369:-9.19202,0,-237.246 0/0:13:13,0:13:525:0:0:0,-3.91339,-47.5967 0/0:19:18,1:18:723:1:35:0,-2.22094,-61.8982 dDocent_Contig_827 14 . C A 92.4271 . AB=0.193548;ABP=28.2974;AC=2;AF=0.333333;AN=6;AO=6;CIGAR=1X;DP=50;DPB=50;DPRA=0.815789;EPP=16.0391;EPPR=98.5551;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=237;QR=1769;RO=44;RPL=0;RPP=16.0391;RPPR=98.5551;RPR=6;RUN=1;SAF=6;SAP=16.0391;SAR=0;SRF=44;SRP=98.5551;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:21:18,3:18:721:3:118:-4.68057,0,-58.893 0/0:19:19,0:19:768:0:0:0,-5.71957,-69.4406 0/1:10:7,3:7:280:3:119:-8.08471,0,-22.5601 dDocent_Contig_828 17 . G T 909.071 . AB=0.25974;ABP=80.2245;AC=3;AF=0.5;AN=6;AO=40;CIGAR=1X;DP=154;DPB=154;DPRA=0;EPP=89.8692;EPPR=250.558;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=1575;QR=4535;RO=114;RPL=0;RPP=89.8692;RPPR=250.558;RPR=40;RUN=1;SAF=40;SAP=89.8692;SAR=0;SRF=114;SRP=250.558;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:102:74,28:74:2937:28:1108:-69.3009,0,-233.732 0/1:14:12,2:12:475:2:81:-3.47131,0,-38.8826 0/1:38:28,10:28:1123:10:386:-23.6528,0,-89.9147 dDocent_Contig_830 61 . T C 56.5362 . AB=0.101695;ABP=165.613;AC=3;AF=0.5;AN=6;AO=12;CIGAR=1X;DP=118;DPB=118;DPRA=0;EPP=29.068;EPPR=233.186;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=485;QR=4200;RO=106;RPL=12;RPP=29.068;RPPR=233.186;RPR=0;RUN=1;SAF=12;SAP=29.068;SAR=0;SRF=106;SRP=233.186;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:72:66,6:66:2606:6:242:-0.483163,0,-212.99 0/1:21:19,2:19:753:2:81:-1.3641,0,-61.77 0/1:25:21,4:21:841:4:162:-7.44121,0,-68.4779 dDocent_Contig_831 32 . G C 62.7589 . AB=0.125;ABP=61.6401;AC=1;AF=0.166667;AN=6;AO=6;CIGAR=1X;DP=62;DPB=62;DPRA=6.85714;EPP=16.0391;EPPR=124.613;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=243;QR=2229;RO=56;RPL=0;RPP=16.0391;RPPR=124.613;RPR=6;RUN=1;SAF=6;SAP=16.0391;SAR=0;SRF=56;SRP=124.613;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:48:42,6:42:1665:6:243:-7.79874,0,-135.617 0/0:6:6,0:6:240:0:0:0,-1.80618,-21.9754 0/0:8:8,0:8:324:0:0:0,-2.40824,-29.5294 dDocent_Contig_832 174 . T A 292.825 . AB=0.423077;ABP=4.34659;AC=2;AF=0.333333;AN=6;AO=11;CIGAR=1X;DP=36;DPB=36;DPRA=1.3;EPP=26.8965;EPPR=57.2971;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=443;QR=987;RO=25;RPL=11;RPP=26.8965;RPPR=57.2971;RPR=0;RUN=1;SAF=0;SAP=26.8965;SAR=11;SRF=0;SRP=57.2971;SRR=25;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:18:9,9:9:362:9:361:-27.4339,0,-27.5256 0/0:10:10,0:10:382:0:0:0,-3.0103,-34.7286 0/1:8:6,2:6:243:2:82:-5.37144,0,-19.8394 dDocent_Contig_833 119 . T C 293.764 . AB=0.378378;ABP=7.76406;AC=2;AF=0.333333;AN=6;AO=14;CIGAR=1X3M;DP=44;DPB=44;DPRA=2.64286;EPP=33.4109;EPPR=63.8115;GTI=0;LEN=1;MEANALT=1.5;MQM=60;MQMR=60;NS=3;NUMALT=2;ODDS=0;PAIRED=0.785714;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=479;QR=904;RO=28;RPL=0;RPP=33.4109;RPPR=63.8115;RPR=14;RUN=1;SAF=0;SAP=33.4109;SAR=14;SRF=0;SRP=63.8115;SRR=28;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|1:18:14,0,4:14:435:0,4:0,140:-7.52639,-11.7408,-46.6359,0,-35.2362,-34.0321 0|0:7:7,0,0:7:230:0,0:0,0:0,-2.10721,-21.0228,-2.10721,-21.0228,-21.0228 0|1:19:7,2,10:7:239:2,10:70,339:-25.3729,-21.7828,-40.5774,0,-13.6917,-16.3787 dDocent_Contig_834 17 . T C 2288.87 . AB=0.403941;ABP=19.2803;AC=3;AF=0.5;AN=6;AO=82;CIGAR=1X;DP=203;DPB=203;DPRA=0;EPP=181.071;EPPR=178.9;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=0.987805;PAIREDR=0.859504;PAO=0;PQA=0;PQR=0;PRO=0;QA=3274;QR=4516;RO=121;RPL=0;RPP=181.071;RPPR=265.758;RPR=82;RUN=1;SAF=82;SAP=181.071;SAR=0;SRF=110;SRP=178.9;SRR=11;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:123:73,50:73:2740:50:2010:-144.066,0,-209.745 0/1:34:22,12:22:801:12:469:-32.3224,0,-62.1661 0/1:46:26,20:26:975:20:795:-58.0209,0,-74.2093 dDocent_Contig_835 28 . C T 419.38 . AB=0.24359;ABP=47.5533;AC=2;AF=0.333333;AN=6;AO=19;CIGAR=1X;DP=94;DPB=94;DPRA=2.4375;EPP=44.2683;EPPR=165.871;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=758;QR=2958;RO=75;RPL=0;RPP=44.2683;RPPR=165.871;RPR=19;RUN=1;SAF=19;SAP=44.2683;SAR=0;SRF=75;SRP=165.871;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:41:28,13:28:1115:13:517:-34.5327,0,-88.2914 0/0:16:16,0:16:629:0:0:0,-4.81648,-56.9428 0/1:37:31,6:31:1214:6:241:-10.9282,0,-98.3932 dDocent_Contig_836 28 . C T 401.12 . AB=0.149038;ABP=225.544;AC=3;AF=0.5;AN=6;AO=31;CIGAR=1X;DP=208;DPB=208;DPRA=0;EPP=70.3259;EPPR=387.361;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=1.38778e-17;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=1191;QR=6994;RO=177;RPL=0;RPP=70.3259;RPPR=387.361;RPR=31;RUN=1;SAF=31;SAP=70.3259;SAR=0;SRF=177;SRP=387.361;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:88:72,16:72:2860:16:600:-27.8354,0,-231.018 0/1:66:57,9:57:2263:9:352:-12.1702,0,-183.98 0/1:54:48,6:48:1871:6:239:-5.62918,0,-152.347 dDocent_Contig_837 24 . A G 51.7656 . AB=0.142857;ABP=41.7866;AC=2;AF=0.333333;AN=6;AO=6;CIGAR=1X;DP=85;DPB=85;DPRA=0;EPP=16.0391;EPPR=174.557;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=231;QR=3096;RO=79;RPL=0;RPP=16.0391;RPPR=174.557;RPR=6;RUN=1;SAF=6;SAP=16.0391;SAR=0;SRF=79;SRP=174.557;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:50:49,1:49:1942:1:40:0,-11.0558,-170.991 0/1:22:20,2:20:788:2:74:-0.403107,0,-64.6165 0/1:13:10,3:10:366:3:117:-6.99682,0,-29.3578 dDocent_Contig_838 7 . T C 5428.99 . AB=0.097561;ABP=60.6867;AC=0;AF=0;AN=6;AO=4;CIGAR=1X3M1X1M;DP=447;DPB=447;DPRA=0;EPP=11.6962;EPPR=322.217;GTI=0;LEN=1;MEANALT=4;MQM=60;MQMR=60;NS=3;NUMALT=5;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=151;QR=5587;RO=147;RPL=0;RPP=11.6962;RPPR=322.217;RPR=4;RUN=1;SAF=4;SAP=11.6962;SAR=0;SRF=147;SRP=322.217;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|0:259:63,22,0,44,0,127:63:2387:22,0,44,0,127:837,0,1712,0,4996:-391.988,-342.309,-531.381,-410.953,-538.004,-606.649,-275.572,-402.622,-471.266,-458.021,-410.953,-538.004,-606.649,-471.266,-606.649,0,-127.054,-195.7,-60.3163,-195.7,-157.47 0|0:41:17,3,4,0,6,11:17:632:3,4,0,6,11:117,151,0,226,438:-30.9572,-26.457,-77.2707,-23.7005,-65.7979,-74.2119,-36.0747,-78.1738,-75.4161,-87.7919,-17.5651,-59.6611,-56.9036,-69.2793,-67.4731,0,-42.1003,-39.3428,-51.7194,-33.2056,-48.4081 0|0:147:67,13,0,20,0,46:67:2568:13,0,20,0,46:503,0,779,0,1774:-125.476,-104.327,-311.18,-145.645,-315.093,-356.411,-82.1122,-251.56,-292.878,-286.858,-145.645,-315.093,-356.411,-292.878,-356.411,0,-169.447,-210.765,-147.232,-210.765,-196.918 dDocent_Contig_840 1 . N G 39.8194 . AB=0;ABP=0;AC=2;AF=1;AN=2;AO=2;CIGAR=1X;DP=2;DPB=2;DPRA=0;EPP=7.35324;EPPR=0;GTI=0;LEN=1;MEANALT=1;MQM=21;MQMR=0;NS=1;NUMALT=1;ODDS=5.99146;PAIRED=1;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=81;QR=0;RO=0;RPL=0;RPP=7.35324;RPPR=0;RPR=2;RUN=1;SAF=2;SAP=7.35324;SAR=0;SRF=0;SRP=0;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 1/1:2:0,2:0:0:2:81:-3.98081,-0.60206,0 ./.:.:.:.:.:.:.:. ./.:.:.:.:.:.:.:. dDocent_Contig_841 38 . T C 379.936 . AB=0.215909;ABP=64.6999;AC=3;AF=0.5;AN=6;AO=19;CIGAR=1X;DP=88;DPB=88;DPRA=0;EPP=44.2683;EPPR=152.842;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=755;QR=2738;RO=69;RPL=0;RPP=44.2683;RPPR=152.842;RPR=19;RUN=1;SAF=19;SAP=44.2683;SAR=0;SRF=69;SRP=152.842;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:65:49,16:49:1942:16:635:-37.9118,0,-155.418 0/1:13:11,2:11:433:2:79:-3.58385,0,-35.41 0/1:10:9,1:9:363:1:41:-1.08427,0,-30.0238 dDocent_Contig_842 109 . G A 609.942 . AB=0.336957;ABP=24.253;AC=3;AF=0.5;AN=6;AO=31;CIGAR=1X;DP=92;DPB=92;DPRA=0;EPP=70.3259;EPPR=135.47;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=1036;QR=2101;RO=61;RPL=0;RPP=70.3259;RPPR=135.47;RPR=31;RUN=1;SAF=0;SAP=70.3259;SAR=31;SRF=0;SRP=135.47;SRR=61;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:49:28,21:28:963:21:702:-48.7417,0,-72.2311 0/1:15:9,6:9:302:6:201:-13.9036,0,-22.9908 0/1:28:24,4:24:836:4:133:-3.8698,0,-67.1307 dDocent_Contig_843 8 . G A 121.045 . AB=0.106122;ABP=333.154;AC=3;AF=0.5;AN=6;AO=26;CIGAR=1X;DP=245;DPB=245;DPRA=0;EPP=59.4686;EPPR=403.602;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=1.38778e-17;PAIRED=1;PAIREDR=0.936073;PAO=0;PQA=0;PQR=0;PRO=0;QA=1003;QR=8353;RO=219;RPL=0;RPP=59.4686;RPPR=478.563;RPR=26;RUN=1;SAF=26;SAP=59.4686;SAR=0;SRF=210;SRP=403.602;SRR=9;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:85:77,8:77:2949:8:310:-2.67603,0,-239.993 0/1:59:52,7:52:1979:7:266:-6.54093,0,-160.59 0/1:101:90,11:90:3425:11:427:-8.38095,0,-277.988 dDocent_Contig_844 197 . G A 80.9067 . AB=0.185185;ABP=26.2531;AC=1;AF=0.166667;AN=6;AO=5;CIGAR=1X;DP=52;DPB=52;DPRA=2.16;EPP=13.8677;EPPR=105.07;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=0;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=193;QR=1796;RO=47;RPL=5;RPP=13.8677;RPPR=105.07;RPR=0;RUN=1;SAF=0;SAP=13.8677;SAR=5;SRF=0;SRP=105.07;SRR=47;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:27:22,5:22:857:5:193:-9.61355,0,-69.324 0/0:9:9,0:9:319:0:0:0,-2.70927,-29.0413 0/0:16:16,0:16:620:0:0:0,-4.81648,-56.1401 dDocent_Contig_845 7 . T A 18950.9 . AB=0.68973;ABP=292.229;AC=3;AF=0.5;AN=6;AO=638;CIGAR=1X;DP=925;DPB=925;DPRA=0;EPP=1388.41;EPPR=583.285;GTI=0;LEN=1;MEANALT=1.66667;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=0.971731;PAO=0;PQA=0;PQR=0;PRO=0;QA=24213;QR=10654;RO=283;RPL=0;RPP=1388.41;RPPR=617.537;RPR=638;RUN=1;SAF=638;SAP=1388.41;SAR=0;SRF=279;SRP=583.285;SRR=4;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:480:154,324:154:5782:324:12347:-966.477,0,-376.098 0/1:181:51,128:51:1940:128:4836:-381.02,0,-120.575 0/1:264:78,186:78:2932:186:7030:-553.117,0,-184.587 dDocent_Contig_847 111 . T C 69.5419 . AB=0.307692;ABP=7.18621;AC=1;AF=0.166667;AN=6;AO=4;CIGAR=1X;DP=38;DPB=38;DPRA=1.04;EPP=11.6962;EPPR=76.8404;GTI=0;LEN=1;MEANALT=1;MQM=59;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=0;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=134;QR=1163;RO=34;RPL=0;RPP=11.6962;RPPR=76.8404;RPR=4;RUN=1;SAF=4;SAP=11.6962;SAR=0;SRF=0;SRP=76.8404;SRR=34;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:13:9,4:9:312:4:134:-8.47706,0,-24.5028 0/0:17:17,0:17:572:0:0:0,-5.11751,-51.7996 0/0:8:8,0:8:279:0:0:0,-2.40824,-25.449 dDocent_Contig_848 26 . T A 206.872 . AB=0.1625;ABP=82.1605;AC=2;AF=0.333333;AN=6;AO=13;CIGAR=1M3I1M1X2M7D1M;DP=91;DPB=87;DPRA=3.63636;EPP=31.2394;EPPR=163.699;GTI=0;LEN=1;MEANALT=2.5;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=0.932432;PAO=0;PQA=0;PQR=0;PRO=0;QA=509;QR=2851;RO=74;RPL=0;RPP=31.2394;RPPR=163.699;RPR=13;RUN=1;SAF=13;SAP=31.2394;SAR=0;SRF=74;SRP=163.699;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|1:70:55,12:55:2130:12:471:-22.2008,0,-171.377 0|1:10:8,1:8:293:1:38:-0.813137,0,-23.8149 0|0:11:11,0:11:428:0:0:0,-3.31133,-38.8737 dDocent_Contig_849 7 . T A 1677.64 . AB=0.496599;ABP=3.02507;AC=3;AF=0.5;AN=6;AO=73;CIGAR=1X;DP=147;DPB=147;DPRA=0;EPP=161.528;EPPR=163.699;GTI=0;LEN=1;MEANALT=1;MQM=42.4247;MQMR=60;NS=3;NUMALT=1;ODDS=6.93889e-18;PAIRED=0;PAIREDR=0.297297;PAO=0;PQA=0;PQR=0;PRO=0;QA=2776;QR=2833;RO=74;RPL=0;RPP=161.528;RPPR=163.699;RPR=73;RUN=1;SAF=73;SAP=161.528;SAR=0;SRF=74;SRP=163.699;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:34:17,17:17:645:17:638:-39.7523,0,-48.1487 0/1:68:34,34:34:1307:34:1302:-75.9158,0,-97.4481 0/1:45:23,22:23:881:22:836:-57.6185,0,-66.0617 dDocent_Contig_850 136 . A G 41.3568 . AB=0.106061;ABP=91.9749;AC=2;AF=0.333333;AN=6;AO=7;CIGAR=1X;DP=87;DPB=87;DPRA=1.57143;EPP=18.2106;EPPR=176.728;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=276;QR=3186;RO=80;RPL=0;RPP=18.2106;RPPR=176.728;RPR=7;RUN=1;SAF=0;SAP=18.2106;SAR=7;SRF=0;SRP=176.728;SRR=80;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:53:47,6:47:1880:6:236:-5.65678,0,-153.443 0/1:13:12,1:12:457:1:40:-0.0822893,0,-37.5554 0/0:21:21,0:21:849:0:0:0,-6.32163,-76.7218 dDocent_Contig_851 8 . G T 750.438 . AB=0.227848;ABP=104.657;AC=2;AF=0.333333;AN=6;AO=36;CIGAR=1X;DP=171;DPB=171;DPRA=6.07692;EPP=81.1833;EPPR=296.159;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=1394;QR=5145;RO=135;RPL=0;RPP=81.1833;RPPR=296.159;RPR=36;RUN=1;SAF=36;SAP=81.1833;SAR=0;SRF=135;SRP=296.159;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:134:103,31:103:3934:31:1199:-67.8672,0,-313.819 0/0:13:13,0:13:479:0:0:0,-3.91339,-43.4462 0/1:24:19,5:19:732:5:195:-10.6995,0,-58.9868 dDocent_Contig_852 14 . T C 232.241 . AB=0.314286;ABP=13.4954;AC=3;AF=0.5;AN=6;AO=11;CIGAR=1X2M;DP=35;DPB=35;DPRA=0;EPP=26.8965;EPPR=48.6112;GTI=0;LEN=1;MEANALT=1.33333;MQM=51.2727;MQMR=60;NS=3;NUMALT=2;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=430;QR=801;RO=21;RPL=0;RPP=26.8965;RPPR=48.6112;RPR=11;RUN=1;SAF=11;SAP=26.8965;SAR=0;SRF=21;SRP=48.6112;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|1:10:7,0,3:7:282:0,3:0,123:-8.45449,-10.5617,-33.8003,0,-23.646,-22.7429 0|1:12:5,3,4:5:181:3,4:117,144:-9.13319,-1.00084,-14.8904,0,-5.13534,-13.5536 0|1:13:9,0,4:9:338:0,4:0,163:-11.145,-13.8543,-41.5185,0,-28.0614,-26.8573 dDocent_Contig_853 15 . G C 1098.35 . AB=0.0512821;ABP=71.2168;AC=0;AF=0;AN=6;AO=2;CIGAR=2X2M1X1M;DP=138;DPB=138;DPRA=0;EPP=7.35324;EPPR=141.985;GTI=0;LEN=1;MEANALT=4;MQM=54;MQMR=54.5781;NS=3;NUMALT=5;ODDS=0;PAIRED=1;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=82;QR=2484;RO=64;RPL=0;RPP=7.35324;RPPR=141.985;RPR=2;RUN=1;SAF=2;SAP=7.35324;SAR=0;SRF=64;SRP=141.985;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|0:46:25,9,0,0,7,3:25:981:9,0,0,7,3:365,0,0,276,119:-22.5801,0,-73.198,-30.1059,-75.9072,-106.013,-30.1059,-75.9072,-106.013,-106.013,-7.74609,-53.5402,-83.6477,-83.6477,-81.5405,-20.3101,-66.1096,-96.2163,-96.2163,-73.8505,-95.3132 0|0:53:17,4,0,1,31,0:17:648:4,0,1,31,0:161,0,37,1038,0:-71.3026,-63.3728,-111.009,-76.4201,-112.213,-125.256,-73.3917,-109.185,-122.228,-121.927,0,-35.7506,-48.796,-45.7686,-39.4641,-76.4201,-112.213,-125.256,-122.228,-48.796,-125.256 0|0:39:22,4,2,2,9,0:22:855:4,2,2,9,0:145,82,81,350,0:-21.4753,-16.2688,-84.8303,-21.3549,-79.2934,-90.5241,-21.4159,-79.3541,-84.4458,-90.5849,0,-57.9366,-63.027,-63.0878,-67.059,-28.098,-86.0344,-91.1262,-91.1869,-69.7683,-97.8672 dDocent_Contig_857 29 . G T 91.9318 . AB=0.140351;ABP=67.0497;AC=1;AF=0.166667;AN=6;AO=9;CIGAR=1M3I6M1X;DP=161;DPB=165.875;DPRA=1.04808;EPP=22.5536;EPPR=291.88;GTI=0;LEN=1;MEANALT=4.5;MQM=60;MQMR=60;NS=3;NUMALT=2;ODDS=1.38778e-17;PAIRED=0.777778;PAIREDR=0.875912;PAO=0;PQA=0;PQR=0;PRO=0;QA=333;QR=5376;RO=137;RPL=0;RPP=22.5536;RPPR=300.502;RPR=9;RUN=1;SAF=9;SAP=22.5536;SAR=0;SRF=136;SRP=291.88;SRR=1;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|1:57:44,8,0:44:1743:8,0:293,0:-10.7161,0,-141.111,-23.9614,-143.52,-167.457 0|0:52:49,0,0:49:1920:0,0:0,0:0,-14.7505,-172.646,-14.7505,-172.646,-172.646 0|0:52:44,1,3:44:1713:1,3:40,120:0,-9.94917,-150.421,-3.35579,-140.836,-143.229 dDocent_Contig_858 204 . A C 1007.84 . AB=0.513158;ABP=3.12459;AC=3;AF=0.5;AN=6;AO=39;CIGAR=1X;DP=76;DPB=76;DPRA=0;EPP=87.6977;EPPR=83.3548;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=1424;QR=1314;RO=37;RPL=39;RPP=87.6977;RPPR=83.3548;RPR=0;RUN=1;SAF=0;SAP=87.6977;SAR=39;SRF=0;SRP=83.3548;SRR=37;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:39:17,22:17:599:22:803:-60.8551,0,-42.4941 0/1:19:10,9:10:351:9:329:-24.2394,0,-26.2079 0/1:18:10,8:10:364:8:292:-21.2121,0,-27.6879 dDocent_Contig_860 8 . G C 315.827 . AB=0.124528;ABP=327.51;AC=1;AF=0.166667;AN=6;AO=38;CIGAR=1X;DP=414;DPB=414;DPRA=0;EPP=85.5263;EPPR=819.484;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=1442;QR=14425;RO=376;RPL=0;RPP=85.5263;RPPR=819.484;RPR=38;RUN=1;SAF=38;SAP=85.5263;SAR=0;SRF=376;SRP=819.484;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:265:232,33:232:8885:33:1251:-33.1055,0,-719.609 0/0:54:52,2:52:1987:2:74:0,-9.22974,-172.045 0/0:95:92,3:92:3553:3:117:0,-17.6875,-308.979 dDocent_Contig_862 14 . T A 162.018 . AB=0.113514;ABP=243.034;AC=2;AF=0.333333;AN=6;AO=21;CIGAR=1X;DP=224;DPB=224;DPRA=2.37179;EPP=48.6112;EPPR=441.648;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=1.38778e-17;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=830;QR=8018;RO=202;RPL=0;RPP=48.6112;RPPR=441.648;RPR=21;RUN=1;SAF=21;SAP=48.6112;SAR=0;SRF=202;SRP=441.648;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:124:109,15:109:4307:15:589:-16.0184,0,-350.267 0/0:39:38,0:38:1505:0:0:0,-11.4391,-135.299 0/1:61:55,6:55:2206:6:241:-3.70347,0,-180.345 dDocent_Contig_863 7 . T G 211.546 . AB=0;ABP=0;AC=0;AF=0;AN=6;AO=5;CIGAR=2X2M1X3M2X2M;DP=140;DPB=140;DPRA=0;EPP=13.8677;EPPR=217.986;GTI=0;LEN=1;MEANALT=4;MQM=60;MQMR=60;NS=3;NUMALT=5;ODDS=0;PAIRED=1;PAIREDR=0.828283;PAO=0;PQA=0;PQR=0;PRO=0;QA=178;QR=3777;RO=99;RPL=0;RPP=13.8677;RPPR=217.986;RPR=5;RUN=1;SAF=5;SAP=13.8677;SAR=0;SRF=99;SRP=217.986;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|0:76:58,6,5,5,0,2:58:2223:6,5,5,0,2:193,185,178,0,81:0,-1.91237,-182.584,-5.46564,-172.389,-186.432,-2.94571,-169.886,-173.433,-183.93,-17.4597,-184.39,-187.937,-185.435,-199.94,-10.7718,-177.71,-181.258,-178.755,-193.26,-192.658 0|0:34:19,5,0,0,3,5:19:709:5,0,0,3,5:183,0,0,115,204:-11.1221,-1.90572,-58.4279,-16.8417,-59.933,-74.8773,-16.8417,-59.933,-74.8773,-74.8773,-7.40388,-50.4941,-65.4382,-65.4382,-64.5351,0,-43.0962,-58.041,-58.041,-48.6012,-56.5359 0|0:30:22,2,0,0,0,6:22:845:2,0,0,0,6:68,0,0,0,244:-13.5535,-14.677,-83.4207,-20.1762,-84.0228,-89.5353,-20.1762,-84.0228,-89.5353,-89.5353,-20.1762,-84.0228,-89.5353,-89.5353,-89.5353,0,-63.8915,-69.4036,-69.4036,-69.4036,-67.5974 dDocent_Contig_864 19 . A G 236.798 . AB=0.22449;ABP=35.3165;AC=1;AF=0.166667;AN=6;AO=14;CIGAR=1X;DP=115;DPB=115;DPRA=0;EPP=33.4109;EPPR=222.329;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=553;QR=3989;RO=101;RPL=0;RPP=33.4109;RPPR=222.329;RPR=14;RUN=1;SAF=14;SAP=33.4109;SAR=0;SRF=101;SRP=222.329;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:49:38,11:38:1474:11:440:-25.2024,0,-118.154 0/0:39:38,1:38:1514:1:35:0,-8.24154,-133.01 0/0:27:25,2:25:1001:2:78:0,-0.725033,-82.9804 dDocent_Contig_865 36 . C T 850.235 . AB=0.57971;ABP=6.81824;AC=3;AF=0.5;AN=6;AO=40;CIGAR=1X;DP=69;DPB=69;DPRA=0;EPP=89.8692;EPPR=65.983;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=1227;QR=1125;RO=29;RPL=0;RPP=89.8692;RPPR=65.983;RPR=40;RUN=1;SAF=40;SAP=89.8692;SAR=0;SRF=29;SRP=65.983;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:26:10,16:10:395:16:486:-36.2042,0,-28.0802 0/1:18:7,11:7:277:11:328:-24.3897,0,-19.88 0/1:25:12,13:12:453:13:413:-29.9525,0,-33.5727 dDocent_Contig_866 88 . C T 143.769 . AB=0.141593;ABP=129.09;AC=1;AF=0.166667;AN=6;AO=21;CIGAR=1X;DP=207;DPB=207;DPRA=0;EPP=48.6112;EPPR=406.904;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=6.93889e-18;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=725;QR=6387;RO=186;RPL=21;RPP=48.6112;RPPR=406.904;RPR=0;RUN=1;SAF=21;SAP=48.6112;SAR=0;SRF=186;SRP=406.904;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:113:97,16:97:3321:16:551:-15.8998,0,-265.108 0/0:21:20,1:20:689:1:35:0,-2.823,-58.8336 0/0:73:69,4:69:2377:4:139:0,-9.1225,-201.343 dDocent_Contig_867 32 . T C 12500.3 . 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AB=0.0545159;ABP=2121.52;AC=0;AF=0;AN=6;AO=67;CIGAR=1X2M1X2M1X;DP=1229;DPB=1229.71;DPRA=0;EPP=148.499;EPPR=87.6977;GTI=0;LEN=1;MEANALT=20;MQM=55.6716;MQMR=60;NS=3;NUMALT=5;ODDS=0;PAIRED=1;PAIREDR=1;PAO=5;PQA=166;PQR=0;PRO=0;QA=2639;QR=1530;RO=39;RPL=0;RPP=148.499;RPPR=87.6977;RPR=67;RUN=1;SAF=67;SAP=148.499;SAR=0;SRF=39;SRP=87.6977;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|0:384:11,24,22,15,116,142:11:437:24,22,15,116,142:937,852,599,4489,5644:-782.365,-709.852,-738.606,-716.94,-677.094,-746.296,-737.951,-698.106,-705.193,-769.414,-428.677,-388.832,-395.92,-416.931,-429.736,-321.021,-281.176,-288.263,-309.275,0,-314.254 0|0:302:14,24,11,9,100,111:14:545:24,11,9,100,111:954,418,358,3874,4391:-626.174,-552.113,-589.678,-596.34,-562.854,-637.818,-601.624,-568.138,-612.365,-643.704,-316.563,-283.076,-327.304,-332.588,-331.249,-269.041,-235.553,-279.782,-285.066,0,-280.416 0|0:543:14,19,28,31,174,192:14:548:19,28,31,174,192:748,1109,1023,6838,7607:-1133.15,-1076.97,-1116.31,-1047.87,-1032.53,-1084.5,-1059.44,-1044.1,-1015,-1095.16,-580.493,-565.151,-536.053,-547.621,-573.173,-511.828,-496.486,-467.388,-478.956,0,-499.089 dDocent_Contig_869 7 . T C 9923.53 . AB=0.262619;ABP=720.538;AC=3;AF=0.5;AN=6;AO=385;CIGAR=1X2M1X6M;DP=1466;DPB=1466.2;DPRA=0;EPP=839.027;EPPR=1158.23;GTI=0;LEN=1;MEANALT=34.3333;MQM=56.5662;MQMR=60;NS=3;NUMALT=2;ODDS=0;PAIRED=0.979221;PAIREDR=0.990602;PAO=1;PQA=32;PQR=32;PRO=1;QA=14277;QR=20585;RO=532;RPL=0;RPP=839.027;RPPR=1158.23;RPR=385;RUN=1;SAF=385;SAP=839.027;SAR=0;SRF=532;SRP=1158.23;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|1:569:185,174,32:185:7197:174,32:6486,1261:-471.846,0,-539.077,-435.159,-499.08,-1016.98 0|1:282:138,48,18:138:5278:48,18:1692,701:-93.727,0,-418.639,-81.981,-379.801,-509.655 0|1:615:209,163,55:209:8110:163,55:6099,2128:-432.303,0,-617.265,-328.068,-499.184,-977.846 dDocent_Contig_871 33 . T A 2263.42 . AB=0.310185;ABP=70.6074;AC=3;AF=0.5;AN=6;AO=67;CIGAR=4M2X2M11I2M1X1M1X;DP=216;DPB=223.538;DPRA=0;EPP=148.499;EPPR=178.9;GTI=0;LEN=1;MEANALT=3;MQM=53.209;MQMR=60;NS=3;NUMALT=2;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=2600;QR=3134;RO=81;RPL=0;RPP=148.499;RPPR=178.9;RPR=67;RUN=1;SAF=67;SAP=148.499;SAR=0;SRF=81;SRP=178.9;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|1:101:50,29,20:50:1928:29,20:1125,731:-77.0845,0,-149.604,-32.4244,-98.6216,-184.72 1|0:35:6,9,20:6:234:9,20:346,764:-69.9693,-43.4337,-59.9611,-9.10015,0,-22.3169 0|1:80:25,29,25:25:972:29,25:1129,939:-84.8106,0,-71.1498,-15.4369,-2.9813,-87.7852 dDocent_Contig_872 14 . T C 156.011 . AB=0.114094;ABP=195.747;AC=1;AF=0.166667;AN=6;AO=18;CIGAR=1X;DP=253;DPB=253;DPRA=4.18519;EPP=42.0968;EPPR=513.306;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=726;QR=9338;RO=235;RPL=0;RPP=42.0968;RPPR=513.306;RPR=18;RUN=1;SAF=18;SAP=42.0968;SAR=0;SRF=235;SRP=513.306;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:149:132,17:132:5218:17:685:-17.124,0,-424.638 0/0:27:27,0:27:1067:0:0:0,-8.12781,-96.3201 0/0:77:76,1:76:3053:1:41:0,-19.0847,-270.753 dDocent_Contig_873 36 . A G 630.268 . AB=0.1625;ABP=240.461;AC=3;AF=0.5;AN=6;AO=39;CIGAR=1X;DP=240;DPB=240;DPRA=0;EPP=87.6977;EPPR=439.476;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=1553;QR=7934;RO=201;RPL=0;RPP=87.6977;RPPR=439.476;RPR=39;RUN=1;SAF=39;SAP=87.6977;SAR=0;SRF=201;SRP=439.476;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:129:114,15:114:4466:15:595:-15.0532,0,-363.062 0/1:33:29,4:29:1164:4:155:-4.38967,0,-95.1045 0/1:78:58,20:58:2304:20:803:-49.1062,0,-184.044 dDocent_Contig_874 90 . A G 99.3863 . AB=0.157143;ABP=74.4828;AC=2;AF=0.333333;AN=6;AO=11;CIGAR=1X;DP=115;DPB=115;DPRA=0.777778;EPP=26.8965;EPPR=228.843;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=376;QR=3460;RO=104;RPL=11;RPP=26.8965;RPPR=228.843;RPR=0;RUN=1;SAF=11;SAP=26.8965;SAR=0;SRF=104;SRP=228.843;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:48:40,8:40:1321:8:276:-10.7263,0,-104.733 0/1:22:19,3:19:639:3:100:-2.70771,0,-51.2056 0/0:45:45,0:45:1500:0:0:0,-13.5463,-135.291 dDocent_Contig_875 46 . G A 10045.9 . AB=0.835443;ABP=80.2213;AC=5;AF=0.833333;AN=6;AO=308;CIGAR=1X;DP=335;DPB=335;DPRA=0;EPP=671.824;EPPR=61.6401;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=11994;QR=1056;RO=27;RPL=0;RPP=671.824;RPPR=61.6401;RPR=308;RUN=1;SAF=308;SAP=671.824;SAR=0;SRF=27;SRP=61.6401;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 1/1:170:7,163:7:272:163:6369:-548.138,-26.3312,0 1/1:86:7,79:7:271:79:3046:-249.499,-1.13697,0 0/1:79:13,66:13:513:66:2579:-208.477,0,-22.7346 dDocent_Contig_876 60 . T C 2535.37 . AB=0.754717;ABP=62.7463;AC=3;AF=0.5;AN=6;AO=80;CIGAR=1X;DP=106;DPB=106;DPRA=0;EPP=176.728;EPPR=57.2971;GTI=0;LEN=1;MEANALT=1.33333;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=3221;QR=1015;RO=25;RPL=80;RPP=176.728;RPPR=57.2971;RPR=0;RUN=1;SAF=80;SAP=176.728;SAR=0;SRF=25;SRP=57.2971;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:48:9,38:9:364:38:1523:-123.073,0,-18.8636 0/1:12:6,6:6:243:6:245:-18.8171,0,-18.6356 0/1:46:10,36:10:408:36:1453:-117.17,0,-23.2332 dDocent_Contig_879 13 . C T 179.757 . AB=0.155844;ABP=82.2267;AC=2;AF=0.333333;AN=6;AO=12;CIGAR=1X;DP=231;DPB=231;DPRA=0.25;EPP=29.068;EPPR=476.391;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=488;QR=8730;RO=218;RPL=0;RPP=29.068;RPPR=476.391;RPR=12;RUN=1;SAF=12;SAP=29.068;SAR=0;SRF=218;SRP=476.391;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:154:153,0:153:6126:0:0:0,-46.0576,-550.979 0/1:24:20,4:20:803:4:163:-7.83371,0,-65.3628 0/1:53:45,8:45:1801:8:325:-13.6648,0,-146.339 dDocent_Contig_880 8 . G A 43.6014 . AB=0.128205;ABP=49.8362;AC=1;AF=0.166667;AN=6;AO=7;CIGAR=1X;DP=141;DPB=141;DPRA=4.2;EPP=18.2106;EPPR=293.988;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=59.8358;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=0.88806;PAO=0;PQA=0;PQR=0;PRO=0;QA=271;QR=5145;RO=134;RPL=0;RPP=18.2106;RPPR=293.988;RPR=7;RUN=1;SAF=7;SAP=18.2106;SAR=0;SRF=134;SRP=293.988;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:87:85,2:85:3258:2:76:0,-18.9748,-286.117 0/0:15:15,0:15:568:0:0:0,-4.51545,-51.4591 0/1:39:34,5:34:1319:5:195:-6.18403,0,-107.257 dDocent_Contig_881 7 . T A 3732.26 . AB=0.303089;ABP=177.466;AC=3;AF=0.5;AN=6;AO=157;CIGAR=1X;DP=518;DPB=518;DPRA=0;EPP=343.931;EPPR=786.912;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=5933;QR=13732;RO=361;RPL=0;RPP=343.931;RPPR=786.912;RPR=157;RUN=1;SAF=157;SAP=343.931;SAR=0;SRF=361;SRP=786.912;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:343:262,81:262:9937:81:3060:-172.306,0,-790.768 0/1:38:20,18:20:762:18:682:-50.2734,0,-57.4694 0/1:137:79,58:79:3033:58:2191:-156.17,0,-231.89 dDocent_Contig_882 20 . G A 202.248 . AB=0.583333;ABP=3.73412;AC=1;AF=0.166667;AN=6;AO=7;CIGAR=1X;DP=51;DPB=51;DPRA=0.615385;EPP=18.2106;EPPR=98.5551;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=281;QR=1773;RO=44;RPL=0;RPP=18.2106;RPPR=98.5551;RPR=7;RUN=1;SAF=7;SAP=18.2106;SAR=0;SRF=44;SRP=98.5551;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:33:33,0:33:1333:0:0:0,-9.93399,-120.231 0/1:12:5,7:5:201:7:281:-22.0487,0,-14.8585 0/0:6:6,0:6:239:0:0:0,-1.80618,-21.8848 dDocent_Contig_883 17 . G A 2005.15 . AB=0.204545;ABP=169.819;AC=0;AF=0;AN=6;AO=45;CIGAR=3X2M1X;DP=220;DPB=220.667;DPRA=0;EPP=100.727;EPPR=137.642;GTI=0;LEN=1;MEANALT=4;MQM=24;MQMR=60;NS=3;NUMALT=4;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=1778;QR=2429;RO=62;RPL=0;RPP=100.727;RPPR=137.642;RPR=45;RUN=1;SAF=45;SAP=100.727;SAR=0;SRF=62;SRP=137.642;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|0:117:29,40,0,31,16:29:1128:40,0,31,16:1556,0,1229,617:-113.926,0,-80.6851,-122.656,-92.7263,-215.359,-65.4161,-35.4966,-158.109,-148.777,-71.9934,-42.0608,-164.703,-107.458,-159.886 0|0:38:9,15,0,10,4:9:357:15,0,10,4:583,0,390,147:-43.3906,0,-24.92,-46.0999,-29.4354,-75.5045,-27.6844,-11.0383,-57.08,-54.0697,-34.0778,-17.4105,-63.4861,-45.0667,-62.282 0|0:65:24,15,4,4,17:24:944:15,4,4,17:596,160,159,679:-48.7209,-9.47558,-82.6245,-42.7623,-73.9581,-119.219,-48.5648,-79.7572,-113.038,-125.015,0,-31.205,-64.4905,-70.2903,-72.5556 dDocent_Contig_884 107 . N G 83.9889 . AB=0;ABP=0;AC=2;AF=1;AN=2;AO=3;CIGAR=1X;DP=3;DPB=3;DPRA=0;EPP=9.52472;EPPR=0;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=0;NS=1;NUMALT=1;ODDS=6.68461;PAIRED=1;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=90;QR=0;RO=0;RPL=0;RPP=9.52472;RPPR=0;RPR=3;RUN=1;SAF=0;SAP=9.52472;SAR=3;SRF=0;SRP=0;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL ./.:.:.:.:.:.:.:. 1/1:3:0,3:0:0:3:90:-8.39835,-0.90309,0 ./.:.:.:.:.:.:.:. dDocent_Contig_885 27 . G C 4357.97 . AB=0.736559;ABP=93.4183;AC=3;AF=0.5;AN=6;AO=137;CIGAR=1X;DP=186;DPB=186;DPRA=0;EPP=300.502;EPPR=109.412;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=5519;QR=1959;RO=49;RPL=0;RPP=300.502;RPPR=109.412;RPR=137;RUN=1;SAF=137;SAP=300.502;SAR=0;SRF=49;SRP=109.412;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:96:25,71:25:1012:71:2884:-230.743,0,-62.4744 0/1:47:18,29:18:726:29:1141:-88.8179,0,-51.516 0/1:43:6,37:6:221:37:1494:-121.759,0,-7.29116 dDocent_Contig_886 19 . A T 419.657 . AB=0.0740741;ABP=45.5551;AC=0;AF=0;AN=6;AO=2;CIGAR=1X2M2X1M1X;DP=114;DPB=114;DPRA=0;EPP=7.35324;EPPR=198.443;GTI=0;LEN=1;MEANALT=2;MQM=60;MQMR=60;NS=3;NUMALT=2;ODDS=0;PAIRED=0;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=80;QR=3506;RO=90;RPL=0;RPP=7.35324;RPPR=198.443;RPR=2;RUN=1;SAF=2;SAP=7.35324;SAR=0;SRF=90;SRP=198.443;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|0:56:51,0,5:51:1978:0,5:0,188:-0.42382,-15.7763,-178.291,0,-162.891,-161.386 0|0:27:15,2,10:15:582:2,10:80,407:-29.0641,-26.9906,-74.1928,0,-41.2135,-44.7947 0|0:31:24,0,7:24:946:0,7:0,282:-16.4207,-23.6454,-101.469,0,-78.2237,-76.1165 dDocent_Contig_887 25 . T A 293.631 . AB=0.155039;ABP=136.345;AC=2;AF=0.333333;AN=6;AO=30;CIGAR=1X;DP=271;DPB=271;DPRA=0;EPP=68.1545;EPPR=526.335;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=1187;QR=9441;RO=241;RPL=0;RPP=68.1545;RPPR=526.335;RPR=30;RUN=1;SAF=30;SAP=68.1545;SAR=0;SRF=241;SRP=526.335;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:142:132,10:132:5177:10:398:0,-6.56802,-429.665 0/1:26:22,4:22:842:4:156:-6.58905,0,-68.2569 0/1:103:87,16:87:3422:16:633:-26.2969,0,-277.043 dDocent_Contig_888 71 . T C 1531.03 . AB=0.310638;ABP=76.2028;AC=3;AF=0.5;AN=6;AO=73;CIGAR=1X;DP=235;DPB=235;DPRA=0;EPP=161.528;EPPR=354.789;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=1.38778e-17;PAIRED=1;PAIREDR=0.962963;PAO=0;PQA=0;PQR=0;PRO=0;QA=2538;QR=5615;RO=162;RPL=73;RPP=161.528;RPPR=354.789;RPR=0;RUN=1;SAF=73;SAP=161.528;SAR=0;SRF=162;SRP=354.789;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:120:83,37:83:2829:37:1288:-80.0948,0,-218.722 0/1:46:30,16:30:1085:16:555:-36.4278,0,-84.1142 0/1:69:49,20:49:1701:20:695:-42.1028,0,-132.607 dDocent_Contig_891 17 . T C 10643.5 . AB=0.853093;ABP=423.179;AC=3;AF=0.5;AN=6;AO=331;CIGAR=1X;DP=388;DPB=388;DPRA=0;EPP=721.768;EPPR=110.022;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=0.894737;PAO=0;PQA=0;PQR=0;PRO=0;QA=13187;QR=2268;RO=57;RPL=0;RPP=721.768;RPPR=126.784;RPR=331;RUN=1;SAF=331;SAP=721.768;SAR=0;SRF=55;SRP=110.022;SRR=2;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:228:26,202:26:1038:202:8032:-653.822,0,-25.0748 0/1:69:7,62:7:278:62:2482:-202.751,0,-4.61767 0/1:91:24,67:24:952:67:2673:-213.298,0,-58.5834 dDocent_Contig_892 15 . T G 3083.57 . AB=0.6375;ABP=29.2851;AC=3;AF=0.5;AN=6;AO=102;CIGAR=1X;DP=160;DPB=160;DPRA=0;EPP=224.5;EPPR=128.956;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=4014;QR=2298;RO=58;RPL=0;RPP=224.5;RPPR=128.956;RPR=102;RUN=1;SAF=102;SAP=224.5;SAR=0;SRF=58;SRP=128.956;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:79:27,52:27:1067:52:2048:-160.725,0,-72.5316 0/1:31:15,16:15:593:16:640:-48.6025,0,-44.3748 0/1:50:16,34:16:638:34:1326:-104.553,0,-42.7013 dDocent_Contig_893 26 . A G 292.085 . AB=0.270833;ABP=24.906;AC=2;AF=0.333333;AN=6;AO=13;CIGAR=1X;DP=69;DPB=69;DPRA=1.14286;EPP=31.2394;EPPR=124.613;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=516;QR=2173;RO=56;RPL=0;RPP=31.2394;RPPR=124.613;RPR=13;RUN=1;SAF=13;SAP=31.2394;SAR=0;SRF=56;SRP=124.613;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:21:21,0:21:813:0:0:0,-6.32163,-73.4742 0/1:24:17,7:17:675:7:281:-18.4369,0,-53.8565 0/1:24:18,6:18:685:6:235:-14.2945,0,-54.7469 dDocent_Contig_894 118 . G C 339.527 . AB=0.46875;ABP=3.28173;AC=2;AF=0.333333;AN=6;AO=15;CIGAR=1X;DP=41;DPB=41;DPRA=1.77778;EPP=35.5824;EPPR=59.4686;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=516;QR=892;RO=26;RPL=0;RPP=35.5824;RPPR=59.4686;RPR=15;RUN=1;SAF=0;SAP=35.5824;SAR=15;SRF=0;SRP=59.4686;SRR=26;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:23:12,11:12:407:11:380:-27.6092,0,-30.0324 0/0:9:9,0:9:311:0:0:0,-2.70927,-28.3252 0/1:9:5,4:5:174:4:136:-9.86642,0,-13.2927 dDocent_Contig_895 30 . A G 386.825 . AB=0.424242;ABP=4.65535;AC=2;AF=0.333333;AN=6;AO=14;CIGAR=1X;DP=46;DPB=46;DPRA=1.26923;EPP=33.4109;EPPR=72.4974;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=571;QR=1265;RO=32;RPL=0;RPP=33.4109;RPPR=72.4974;RPR=14;RUN=1;SAF=14;SAP=33.4109;SAR=0;SRF=32;SRP=72.4974;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:13:13,0:13:520:0:0:0,-3.91339,-47.1466 0/1:12:6,6:6:246:6:245:-18.8171,0,-18.9078 0/1:21:13,8:13:499:8:326:-23.3882,0,-38.93 dDocent_Contig_896 78 . T A 1840.69 . AB=0.547619;ABP=5.49198;AC=3;AF=0.5;AN=6;AO=69;CIGAR=1X;DP=126;DPB=126;DPRA=0;EPP=152.842;EPPR=126.784;GTI=0;LEN=1;MEANALT=1;MQM=58.9565;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=2527;QR=2159;RO=57;RPL=69;RPP=152.842;RPPR=126.784;RPR=0;RUN=1;SAF=69;SAP=152.842;SAR=0;SRF=57;SRP=126.784;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:53:26,27:26:974:27:1015:-75.6986,0,-72.0141 0/1:22:16,6:16:630:6:227:-13.5259,0,-50.4088 0/1:51:15,36:15:555:36:1285:-100.367,0,-34.9379 dDocent_Contig_897 14 . G T 203.32 . AB=0.183333;ABP=55.2704;AC=1;AF=0.166667;AN=6;AO=12;CIGAR=1X2M1X;DP=108;DPB=108;DPRA=2.2;EPP=29.068;EPPR=204.957;GTI=0;LEN=1;MEANALT=2;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=474;QR=3656;RO=93;RPL=0;RPP=29.068;RPPR=204.957;RPR=12;RUN=1;SAF=12;SAP=29.068;SAR=0;SRF=93;SRP=204.957;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|1:60:46,11:46:1810:11:434:-21.8549,0,-145.565 0|0:20:20,0:20:781:0:0:0,-6.0206,-70.6118 0|0:28:27,1:27:1065:1:40:0,-4.43316,-92.1484 dDocent_Contig_898 98 . N G 60.7974 . AB=0;ABP=0;AC=2;AF=1;AN=2;AO=2;CIGAR=1X;DP=2;DPB=2;DPRA=0;EPP=7.35324;EPPR=0;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=0;NS=1;NUMALT=1;ODDS=5.99146;PAIRED=1;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=64;QR=0;RO=0;RPL=2;RPP=7.35324;RPPR=0;RPR=0;RUN=1;SAF=2;SAP=7.35324;SAR=0;SRF=0;SRP=0;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL ./.:.:.:.:.:.:.:. 1/1:2:0,2:0:0:2:64:-6.07866,-0.60206,0 ./.:.:.:.:.:.:.:. dDocent_Contig_899 33 . A T 454.962 . AB=0.358491;ABP=12.2288;AC=2;AF=0.333333;AN=6;AO=21;CIGAR=1X;DP=77;DPB=77;DPRA=0;EPP=48.6112;EPPR=124.613;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=780;QR=2211;RO=56;RPL=0;RPP=48.6112;RPPR=124.613;RPR=21;RUN=1;SAF=21;SAP=48.6112;SAR=0;SRF=56;SRP=124.613;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:42:25,17:25:984:17:637:-45.0196,0,-76.2103 0/1:11:9,2:9:354:2:77:-3.99781,0,-28.9073 0/0:24:22,2:22:873:2:66:0,-0.957109,-72.6088 dDocent_Contig_900 26 . C T 286.166 . AB=0.131868;ABP=217.246;AC=2;AF=0.333333;AN=6;AO=24;CIGAR=1X;DP=194;DPB=194;DPRA=7.58333;EPP=55.1256;EPPR=372.161;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=958;QR=6726;RO=170;RPL=0;RPP=55.1256;RPPR=372.161;RPR=24;RUN=1;SAF=24;SAP=55.1256;SAR=0;SRF=170;SRP=372.161;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:148:128,20:128:5066:20:796:-27.4073,0,-411.258 0/0:12:12,0:12:470:0:0:0,-3.61236,-42.6476 0/1:34:30,4:30:1190:4:162:-4.73194,0,-97.1428 dDocent_Contig_901 7 . T G 106.035 . AB=0.0379747;ABP=149.488;AC=0;AF=0;AN=6;AO=15;CIGAR=2X;DP=244;DPB=244;DPRA=2.47561;EPP=35.5824;EPPR=452.505;GTI=0;LEN=1;MEANALT=2.5;MQM=60;MQMR=47.9179;NS=3;NUMALT=2;ODDS=1.38778e-17;PAIRED=1;PAIREDR=0.743961;PAO=0;PQA=0;PQR=0;PRO=0;QA=485;QR=7887;RO=207;RPL=0;RPP=35.5824;RPPR=452.505;RPR=15;RUN=1;SAF=15;SAP=35.5824;SAR=0;SRF=207;SRP=452.505;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|0:124:103,12,9:103:3929:12,9:382,344:0,-0.288521,-273.707,-2.75225,-249.089,-277.132 0|0:41:39,0,2:39:1486:0,2:0,78:0,-11.7402,-99.715,-4.93876,-93.2981,-92.696 0|0:79:65,3,10:65:2472:3,10:103,389:-12.4266,-23.6397,-184.311,0,-153.234,-158.589 dDocent_Contig_902 10 . A C 880.83 . AB=0.236686;ABP=104.787;AC=3;AF=0.5;AN=6;AO=40;CIGAR=1X;DP=169;DPB=169;DPRA=0;EPP=89.8692;EPPR=283.13;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=59.9457;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=1594;QR=5121;RO=129;RPL=0;RPP=89.8692;RPPR=283.13;RPR=40;RUN=1;SAF=40;SAP=89.8692;SAR=0;SRF=129;SRP=283.13;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:100:81,19:81:3242:19:750:-37.7087,0,-261.718 0/1:19:14,5:14:551:5:196:-12.295,0,-44.2137 0/1:50:34,16:34:1328:16:648:-43.6022,0,-104.738 dDocent_Contig_903 15 . A G 839.857 . AB=0.293103;ABP=46.1402;AC=2;AF=0.333333;AN=6;AO=37;CIGAR=1X;DP=157;DPB=157;DPRA=0;EPP=83.3548;EPPR=254.973;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=0.983333;PAO=0;PQA=0;PQR=0;PRO=0;QA=1476;QR=4702;RO=120;RPL=0;RPP=83.3548;RPPR=263.587;RPR=37;RUN=1;SAF=37;SAP=83.3548;SAR=0;SRF=119;SRP=254.973;SRR=1;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:85:65,20:65:2542:20:802:-46.9085,0,-203.342 0/1:31:17,14:17:677:14:551:-40.5999,0,-51.9298 0/0:41:38,3:38:1483:3:123:0,-0.877441,-122.254 dDocent_Contig_904 16 . T G 7566.25 . AB=0.872414;ABP=352.363;AC=3;AF=0.5;AN=6;AO=253;CIGAR=1X2M1X3M1X;DP=290;DPB=290;DPRA=0;EPP=552.393;EPPR=79.0118;GTI=0;LEN=1;MEANALT=1.66667;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=9429;QR=1364;RO=35;RPL=0;RPP=552.393;RPPR=79.0118;RPR=253;RUN=1;SAF=253;SAP=552.393;SAR=0;SRF=35;SRP=79.0118;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|1:155:17,137:17:665:137:5105:-413.051,0,-13.7092 0|1:42:7,35:7:272:35:1296:-104.292,0,-12.2032 0|1:93:11,81:11:427:81:3028:-244.805,0,-10.8741 dDocent_Contig_905 32 . T C 2408.24 . AB=0.4375;ABP=9.52472;AC=3;AF=0.5;AN=6;AO=84;CIGAR=1X;DP=192;DPB=192;DPRA=0;EPP=185.414;EPPR=237.529;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=3370;QR=4319;RO=108;RPL=0;RPP=185.414;RPPR=237.529;RPR=84;RUN=1;SAF=84;SAP=185.414;SAR=0;SRF=108;SRP=237.529;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:88:37,51:37:1485:51:2049:-158.098,0,-107.404 0/1:33:24,9:24:938:9:366:-23.371,0,-74.7852 0/1:71:47,24:47:1896:24:955:-64.878,0,-149.465 dDocent_Contig_906 31 . T C 139.157 . AB=0.151515;ABP=72.629;AC=2;AF=0.333333;AN=6;AO=10;CIGAR=1X;DP=84;DPB=84;DPRA=1.83333;EPP=24.725;EPPR=161.528;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=6.93889e-18;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=406;QR=2911;RO=73;RPL=0;RPP=24.725;RPPR=161.528;RPR=10;RUN=1;SAF=10;SAP=24.725;SAR=0;SRF=73;SRP=161.528;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:50:44,6:44:1751:6:243:-7.19668,0,-142.753 0/1:16:12,4:12:482:4:163:-10.2419,0,-38.9147 0/0:18:17,0:17:678:0:0:0,-5.11751,-60.9435 dDocent_Contig_907 15 . A G 190.929 . AB=0.2;ABP=26.4622;AC=1;AF=0.166667;AN=6;AO=6;CIGAR=2X;DP=125;DPB=125;DPRA=0;EPP=3.0103;EPPR=215.9;GTI=0;LEN=1;MEANALT=2;MQM=38;MQMR=60;NS=3;NUMALT=3;ODDS=0;PAIRED=0;PAIREDR=0.941176;PAO=0;PQA=0;PQR=0;PRO=0;QA=236;QR=4064;RO=102;RPL=0;RPP=16.0391;RPPR=224.5;RPR=6;RUN=1;SAF=3;SAP=3.0103;SAR=3;SRF=101;SRP=215.9;SRR=1;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|0:63:54,0,0,9:54:2148:0,0,9:0,0,335:-11.5323,-27.7879,-204.655,-27.7879,-204.655,-204.655,0,-177.242,-177.242,-174.533 0|1:30:21,6,0,3:21:827:6,0,3:236,0,119:-11.033,0,-66.2225,-17.3546,-68.0286,-85.4028,-7.54529,-58.2326,-75.606,-74.7029 0|0:32:27,0,2,3:27:1089:0,2,3:0,82,118:-1.56784,-9.69565,-99.4631,-2.92087,-92.6945,-92.0924,0,-89.7585,-82.9899,-88.8554 dDocent_Contig_908 20 . G A 2532.75 . AB=0.335616;ABP=71.5455;AC=3;AF=0.5;AN=6;AO=98;CIGAR=2X;DP=292;DPB=292;DPRA=0;EPP=215.815;EPPR=422.104;GTI=0;LEN=1;MEANALT=1.33333;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=3842;QR=7405;RO=193;RPL=0;RPP=215.815;RPPR=422.104;RPR=98;RUN=1;SAF=98;SAP=215.815;SAR=0;SRF=193;SRP=422.104;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|1:177:122,54:122:4689:54:2137:-139.353,0,-368.864 0|1:27:15,12:15:561:12:459:-33.5256,0,-42.6962 0|1:88:56,32:56:2155:32:1246:-85.9188,0,-167.675 dDocent_Contig_909 57 . A C 348.316 . AB=0.253731;ABP=38.3048;AC=3;AF=0.5;AN=6;AO=17;CIGAR=1X;DP=67;DPB=67;DPRA=0;EPP=39.9253;EPPR=111.584;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=648;QR=1900;RO=50;RPL=17;RPP=39.9253;RPPR=111.584;RPR=0;RUN=1;SAF=17;SAP=39.9253;SAR=0;SRF=50;SRP=111.584;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:36:25,11:25:946:11:418:-27.1335,0,-74.613 0/1:22:17,5:17:647:5:194:-11.2099,0,-51.94 0/1:9:8,1:8:307:1:36:-0.889005,0,-25.2825 dDocent_Contig_910 8 . G A 661.907 . AB=0.510638;ABP=3.0565;AC=2;AF=0.333333;AN=6;AO=24;CIGAR=1X;DP=62;DPB=62;DPRA=1.56667;EPP=55.1256;EPPR=85.5263;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=924;QR=1452;RO=38;RPL=0;RPP=55.1256;RPPR=85.5263;RPR=24;RUN=1;SAF=24;SAP=55.1256;SAR=0;SRF=38;SRP=85.5263;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:25:11,14:11:419:14:540:-41.4199,0,-30.5351 0/0:15:15,0:15:574:0:0:0,-4.51545,-52.0008 0/1:22:12,10:12:459:10:384:-28.2937,0,-35.0368 dDocent_Contig_913 23 . T G 279.538 . AB=0.209877;ABP=62.2298;AC=2;AF=0.333333;AN=6;AO=19;CIGAR=1X;DP=136;DPB=136;DPRA=0;EPP=44.2683;EPPR=257.073;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=6.93889e-18;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=685;QR=4370;RO=117;RPL=0;RPP=44.2683;RPPR=257.073;RPR=19;RUN=1;SAF=19;SAP=44.2683;SAR=0;SRF=117;SRP=257.073;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:55:53,2:53:2023:2:72:0,-9.72028,-175.467 0/1:49:41,8:41:1479:8:282:-10.9695,0,-118.627 0/1:32:23,9:23:868:9:331:-20.5072,0,-68.8034 dDocent_Contig_914 59 . G A 1064.58 . AB=0.195513;ABP=254.261;AC=2;AF=0.333333;AN=6;AO=61;CIGAR=1X;DP=331;DPB=331;DPRA=8.21053;EPP=135.47;EPPR=589.308;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=2259;QR=9892;RO=270;RPL=61;RPP=135.47;RPPR=589.308;RPR=0;RUN=1;SAF=61;SAP=135.47;SAR=0;SRF=270;SRP=589.308;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:216:185,31:185:6837:31:1147:-38.501,0,-550.258 0/0:19:19,0:19:688:0:0:0,-5.71957,-62.2435 0/1:96:66,30:66:2367:30:1112:-71.4798,0,-184.365 dDocent_Contig_915 74 . G A 145.444 . AB=0.243243;ABP=24.1968;AC=1;AF=0.166667;AN=6;AO=13;CIGAR=1X;DP=236;DPB=236;DPRA=0.414729;EPP=31.2394;EPPR=487.249;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=3.46945e-18;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=425;QR=7578;RO=223;RPL=13;RPP=31.2394;RPPR=487.249;RPR=0;RUN=1;SAF=13;SAP=31.2394;SAR=0;SRF=223;SRP=487.249;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:129:129,0:129:4405:0:0:0,-38.8329,-396.65 0/1:37:28,9:28:952:9:302:-16.3683,0,-74.853 0/0:70:66,4:66:2221:4:123:0,-9.69797,-188.783 dDocent_Contig_916 8 . T G 29685.7 . AB=0.762931;ABP=699.566;AC=6;AF=1;AN=6;AO=885;CIGAR=1X2M;DP=1160;DPB=1160;DPRA=0;EPP=1924.76;EPPR=152.842;GTI=0;LEN=1;MEANALT=6.33333;MQM=59.9955;MQMR=59.8986;NS=3;NUMALT=2;ODDS=0;PAIRED=1;PAIREDR=0.927536;PAO=0;PQA=0;PQR=0;PRO=0;QA=33259;QR=2625;RO=69;RPL=0;RPP=1924.76;RPPR=152.842;RPR=885;RUN=1;SAF=885;SAP=1924.76;SAR=0;SRF=69;SRP=152.842;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 1|1:409:40,48,295:40:1524:48,295:1828,11106:-922.871,-784.973,-895.527,-24.9353,0,-61.1334 1|1:291:3,33,240:3:117:33,240:1262,8883:-819.66,-717.005,-716.689,-93.9396,0,-31.3106 1|1:460:26,74,350:26:984:74,350:2828,13270:-1231.56,-1007.35,-1065.73,-151.382,0,-126.685 dDocent_Contig_917 26 . T C 102.592 . AB=0.384615;ABP=4.51363;AC=1;AF=0.166667;AN=6;AO=8;CIGAR=1X;DP=148;DPB=148;DPRA=0.262887;EPP=20.3821;EPPR=307.016;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=288;QR=5570;RO=140;RPL=0;RPP=20.3821;RPPR=307.016;RPR=8;RUN=1;SAF=8;SAP=20.3821;SAR=0;SRF=140;SRP=307.016;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:97:97,0:97:3834:0:0:0,-29.1999,-345.073 0/1:13:8,5:8:322:5:174:-12.0829,0,-25.435 0/0:38:35,3:35:1414:3:114:0,-0.807331,-116.878 dDocent_Contig_919 32 . G T 117.477 . AB=0.131579;ABP=92.6121;AC=1;AF=0.166667;AN=6;AO=11;CIGAR=1X;DP=246;DPB=246;DPRA=0.288462;EPP=26.8965;EPPR=511.135;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=439;QR=9382;RO=234;RPL=0;RPP=26.8965;RPPR=511.135;RPR=11;RUN=1;SAF=11;SAP=26.8965;SAR=0;SRF=234;SRP=511.135;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:156:155,0:155:6229:0:0:0,-46.6596,-560.148 0/0:14:13,1:13:530:1:38:0,-0.417151,-44.2493 0/1:76:66,10:66:2623:10:401:-13.571,0,-213.309 dDocent_Contig_921 57 . T C 206.613 . 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AB=0.132231;ABP=145.161;AC=2;AF=0.333333;AN=6;AO=17;CIGAR=1X;DP=140;DPB=140;DPRA=0;EPP=39.9253;EPPR=270.101;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=682;QR=4851;RO=123;RPL=0;RPP=39.9253;RPPR=270.101;RPR=17;RUN=1;SAF=17;SAP=39.9253;SAR=0;SRF=123;SRP=270.101;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:77:67,10:67:2655:10:404:-13.5407,0,-215.902 0/0:19:18,1:18:714:1:41:0,-1.625,-60.4895 0/1:44:38,6:38:1482:6:237:-8.4568,0,-120.375 dDocent_Contig_944 8 . G T 399.14 . AB=0.144279;ABP=223.928;AC=2;AF=0.333333;AN=6;AO=32;CIGAR=1X;DP=250;DPB=250;DPRA=0;EPP=72.4974;EPPR=476.391;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=0.963303;PAO=0;PQA=0;PQR=0;PRO=0;QA=1244;QR=8319;RO=218;RPL=0;RPP=72.4974;RPPR=476.391;RPR=32;RUN=1;SAF=32;SAP=72.4974;SAR=0;SRF=218;SRP=476.391;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:177:150,27:150:5750:27:1049:-41.4347,0,-464.183 0/1:24:22,2:22:842:2:78:-0.178753,0,-68.8778 0/0:49:46,3:46:1727:3:117:0,-3.84009,-144.774 dDocent_Contig_945 31 . C A 913.05 . AB=0.330275;ABP=30.2832;AC=3;AF=0.5;AN=6;AO=36;CIGAR=1X;DP=109;DPB=109;DPRA=0;EPP=81.1833;EPPR=161.528;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=1429;QR=2949;RO=73;RPL=0;RPP=81.1833;RPPR=161.528;RPR=36;RUN=1;SAF=36;SAP=81.1833;SAR=0;SRF=73;SRP=161.528;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:59:38,21:38:1539:21:852:-59.2308,0,-120.984 0/1:25:15,10:15:610:10:385:-27.4762,0,-47.7113 0/1:25:20,5:20:800:5:192:-10.1208,0,-64.7893 dDocent_Contig_946 15 . C T 300.037 . AB=0.157025;ABP=126.641;AC=2;AF=0.333333;AN=6;AO=21;CIGAR=1X;DP=168;DPB=168;DPRA=0;EPP=48.6112;EPPR=322.217;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=851;QR=5859;RO=147;RPL=0;RPP=48.6112;RPPR=322.217;RPR=21;RUN=1;SAF=21;SAP=48.6112;SAR=0;SRF=147;SRP=322.217;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:93:77,16:77:3088:16:646:-30.4775,0,-250 0/1:28:25,3:25:978:3:123:-3.03595,0,-79.8926 0/0:47:45,2:45:1793:2:82:0,-6.36873,-153.806 dDocent_Contig_948 52 . A T 57.7522 . AB=0.137931;ABP=36.0317;AC=1;AF=0.166667;AN=6;AO=4;CIGAR=1X3M2X;DP=51;DPB=51;DPRA=2.07143;EPP=11.6962;EPPR=100.727;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=2;ODDS=0;PAIRED=0;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=143;QR=1635;RO=45;RPL=4;RPP=11.6962;RPPR=100.727;RPR=0;RUN=1;SAF=4;SAP=11.6962;SAR=0;SRF=45;SRP=100.727;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|1:29:25,4,0:25:927:4,0:143,0:-4.49097,0,-75.0119,-12.0167,-76.216,-87.8736 0|0:8:6,0,2:6:224:0,2:0,76:-4.80643,-6.61261,-24.9447,0,-18.7102,-18.1081 0|0:14:14,0,0:14:484:0,0:0,0:0,-4.21442,-43.8825,-4.21442,-43.8825,-43.8825 dDocent_Contig_949 49 . T C 12943.3 . AB=0.848837;ABP=184.808;AC=4;AF=0.666667;AN=6;AO=377;CIGAR=1X;DP=403;DPB=403;DPRA=0;EPP=812.993;EPPR=59.4686;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=15000;QR=1030;RO=26;RPL=1;RPP=812.993;RPPR=59.4686;RPR=376;RUN=1;SAF=377;SAP=821.655;SAR=0;SRF=26;SRP=59.4686;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 1/1:231:0,231:0:0:231:9222:-829.403,-69.5379,0 0/1:59:7,52:7:278:52:2071:-168.815,0,-7.62959 0/1:113:19,94:19:752:94:3707:-299.631,0,-33.9857 dDocent_Contig_950 29 . T C 2704.8 . AB=0.352113;ABP=56.9607;AC=3;AF=0.5;AN=6;AO=100;CIGAR=1X;DP=284;DPB=284;DPRA=0;EPP=220.158;EPPR=402.561;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=4008;QR=7358;RO=184;RPL=0;RPP=220.158;RPPR=402.561;RPR=100;RUN=1;SAF=100;SAP=220.158;SAR=0;SRF=184;SRP=402.561;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:183:122,61:122:4875:61:2433:-164.02,0,-383.538 0/1:25:15,10:15:608:10:403:-29.1041,0,-47.5316 0/1:76:47,29:47:1875:29:1172:-82.879,0,-146.076 dDocent_Contig_951 11 . C T 332.438 . AB=0.146341;ABP=92.0936;AC=1;AF=0.166667;AN=6;AO=13;CIGAR=1X2M1X;DP=136;DPB=136;DPRA=0;EPP=31.2394;EPPR=244.044;GTI=0;LEN=1;MEANALT=1.5;MQM=60;MQMR=60;NS=3;NUMALT=2;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=502;QR=4333;RO=111;RPL=0;RPP=31.2394;RPPR=244.044;RPR=13;RUN=1;SAF=13;SAP=31.2394;SAR=0;SRF=111;SRP=244.044;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|1:82:67,12,3:67:2622:12,3:463,116:-17.8522,0,-211.983,-28.4928,-206.068,-243.185 0|0:14:13,1,0:13:499:1,0:39,0:0,-0.317855,-41.3591,-3.91339,-41.6601,-44.8664 0|0:40:31,0,9:31:1212:0,9:0,340:-18.9138,-28.2458,-127.902,0,-100.037,-97.3278 dDocent_Contig_952 9 . T C 8953.76 . AB=0;ABP=0;AC=6;AF=1;AN=6;AO=274;CIGAR=1X;DP=290;DPB=290;DPRA=0;EPP=597.994;EPPR=37.7539;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=6.93889e-18;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=10538;QR=591;RO=16;RPL=0;RPP=597.994;RPPR=37.7539;RPR=274;RUN=1;SAF=274;SAP=597.994;SAR=0;SRF=16;SRP=37.7539;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 1/1:141:7,134:7:267:134:5138:-438.029,-18.0523,0 1/1:41:0,41:0:0:41:1584:-142.828,-12.3422,0 1/1:108:9,99:9:324:99:3816:-314.042,-3.01264,0 dDocent_Contig_953 63 . T C 1275.38 . AB=0.4;ABP=13.4334;AC=3;AF=0.5;AN=6;AO=48;CIGAR=1X;DP=120;DPB=120;DPRA=0;EPP=107.241;EPPR=159.356;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=6.93889e-18;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=1869;QR=2686;RO=72;RPL=48;RPP=107.241;RPPR=159.356;RPR=0;RUN=1;SAF=48;SAP=107.241;SAR=0;SRF=72;SRP=159.356;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:65:45,20:45:1714:20:797:-52.4785,0,-134.947 0/1:26:14,12:14:530:12:439:-32.0103,0,-40.2104 0/1:29:13,16:13:442:16:633:-48.5721,0,-31.3639 dDocent_Contig_954 98 . N C 478.421 . AB=0;ABP=0;AC=6;AF=1;AN=6;AO=15;CIGAR=1X;DP=15;DPB=15;DPRA=0;EPP=35.5824;EPPR=0;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=0;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=515;QR=0;RO=0;RPL=15;RPP=35.5824;RPPR=0;RPR=0;RUN=1;SAF=15;SAP=35.5824;SAR=0;SRF=0;SRP=0;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 1/1:10:0,10:0:0:10:341:-31.0202,-3.0103,0 1/1:1:0,1:0:0:1:34:-3.39891,-0.30103,0 1/1:4:0,4:0:0:4:140:-12.9449,-1.20412,0 dDocent_Contig_955 8 . C G 6271.98 . AB=0.79235;ABP=138.864;AC=4;AF=0.666667;AN=6;AO=203;CIGAR=2X4M;DP=253;DPB=253;DPRA=0;EPP=443.819;EPPR=72.4974;GTI=0;LEN=1;MEANALT=4;MQM=59.803;MQMR=60;NS=3;NUMALT=3;ODDS=0;PAIRED=0.921182;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=7781;QR=1229;RO=32;RPL=0;RPP=443.819;RPPR=72.4974;RPR=203;RUN=1;SAF=203;SAP=443.819;SAR=0;SRF=32;SRP=72.4974;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|1:124:17,0,102,2:17:649:0,102,2:0,3907,76:-315.447,-320.565,-373.809,0,-53.2521,-22.5471,-314.332,-367.577,-47.0192,-366.975 1|1:70:5,4,58,0:5:191:4,58,0:157,2226,0:-183.016,-171.607,-186.075,-1.77891,-4.53499,0,-184.521,-187.279,-17.4597,-200.192 0|1:59:10,1,43,5:10:389:1,43,5:40,1648,183:-132.257,-131.972,-163.641,0,-28.6828,-19.0348,-120.317,-148.991,-17.0342,-150.781 dDocent_Contig_956 8 . G A 550.151 . AB=0.206452;ABP=119.023;AC=3;AF=0.5;AN=6;AO=32;CIGAR=1X;DP=155;DPB=155;DPRA=0;EPP=72.4974;EPPR=270.101;GTI=0;LEN=1;MEANALT=1;MQM=45.1562;MQMR=59.6423;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=1223;QR=4718;RO=123;RPL=0;RPP=72.4974;RPPR=270.101;RPR=32;RUN=1;SAF=32;SAP=72.4974;SAR=0;SRF=123;SRP=270.101;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:109:83,26:83:3191:26:996:-53.1899,0,-254.503 0/1:17:14,3:14:538:3:115:-5.27854,0,-43.6473 0/1:29:26,3:26:989:3:112:-1.71643,0,-80.575 dDocent_Contig_957 32 . C T 4107.66 . AB=0.383033;ABP=49.2364;AC=3;AF=0.5;AN=6;AO=149;CIGAR=1X;DP=389;DPB=389;DPRA=0;EPP=326.56;EPPR=524.164;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=5920;QR=9569;RO=240;RPL=0;RPP=326.56;RPPR=524.164;RPR=149;RUN=1;SAF=149;SAP=326.56;SAR=0;SRF=240;SRP=524.164;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:254:157,97:157:6255:97:3839:-269.05,0,-486.229 0/1:22:15,7:15:596:7:285:-19.4017,0,-47.3526 0/1:113:68,45:68:2718:45:1796:-127.837,0,-210.724 dDocent_Contig_958 19 . A C 367.656 . AB=0.20202;ABP=79.3628;AC=2;AF=0.333333;AN=6;AO=20;CIGAR=1X;DP=127;DPB=127;DPRA=1.76786;EPP=46.4397;EPPR=235.358;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=6.93889e-18;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=771;QR=4273;RO=107;RPL=0;RPP=46.4397;RPPR=235.358;RPR=20;RUN=1;SAF=20;SAP=46.4397;SAR=0;SRF=107;SRP=235.358;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:56:41,15:41:1646:15:579:-35.5851,0,-131.508 0/1:43:38,5:38:1491:5:192:-4.70315,0,-121.498 0/0:28:28,0:28:1136:0:0:0,-8.42884,-102.519 dDocent_Contig_959 18 . T C 8919.6 . AB=0.799427;ABP=274.793;AC=3;AF=0.5;AN=6;AO=279;CIGAR=1X;DP=349;DPB=349;DPRA=0;EPP=608.851;EPPR=155.013;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=11139;QR=2823;RO=70;RPL=0;RPP=608.851;RPPR=155.013;RPR=279;RUN=1;SAF=279;SAP=608.851;SAR=0;SRF=70;SRP=155.013;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:187:41,146:41:1643:146:5824:-467.657,0,-91.8053 0/1:57:13,44:13:527:44:1748:-140.38,0,-30.6169 0/1:105:16,89:16:653:89:3567:-289.445,0,-27.4942 dDocent_Contig_960 165 . A G 38.7251 . AB=0.166667;ABP=26.1727;AC=2;AF=0.333333;AN=6;AO=5;CIGAR=2X;DP=56;DPB=56;DPRA=0;EPP=13.8677;EPPR=113.755;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=193;QR=1955;RO=51;RPL=5;RPP=13.8677;RPPR=113.755;RPR=0;RUN=1;SAF=0;SAP=13.8677;SAR=5;SRF=0;SRP=113.755;SRR=51;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|0:32:31,1:31:1186:1:40:0,-5.63728,-103.039 0|1:6:5,1:5:197:1:40:-2.1895,0,-16.3004 0|1:18:15,3:15:572:3:113:-5.121,0,-46.3978 dDocent_Contig_962 24 . G C 288.651 . AB=0.270833;ABP=24.906;AC=1;AF=0.166667;AN=6;AO=14;CIGAR=8M1X1M;DP=158;DPB=158.2;DPRA=0.440476;EPP=33.4109;EPPR=307.016;GTI=0;LEN=1;MEANALT=2;MQM=60;MQMR=60;NS=3;NUMALT=2;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=539;QR=5516;RO=140;RPL=0;RPP=33.4109;RPPR=307.016;RPR=14;RUN=1;SAF=14;SAP=33.4109;SAR=0;SRF=140;SRP=307.016;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|0:84:83,0,0:83:3262:0,0:0,0:0,-24.9855,-293.582,-24.9855,-293.582,-293.582 0|0:26:23,2,1:23:896:2,1:78,40:0,-0.51871,-73.5473,-3.6253,-70.8539,-76.9645 0|1:48:34,0,13:34:1358:0,13:0,499:-30.6886,-40.9236,-152.787,0,-111.843,-107.93 dDocent_Contig_963 11 . A T 761.786 . AB=0.159021;ABP=333.24;AC=3;AF=0.5;AN=6;AO=52;CIGAR=1X;DP=327;DPB=327;DPRA=0;EPP=115.927;EPPR=600.165;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=1991;QR=10949;RO=275;RPL=0;RPP=115.927;RPPR=600.165;RPR=52;RUN=1;SAF=52;SAP=115.927;SAR=0;SRF=275;SRP=600.165;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:157:135,22:135:5417:22:861:-30.5364,0,-440.106 0/1:56:44,12:44:1735:12:448:-23.7929,0,-139.519 0/1:114:96,18:96:3797:18:682:-27.3722,0,-307.422 dDocent_Contig_964 168 . G T 74.2328 . AB=0.2;ABP=18.6449;AC=1;AF=0.166667;AN=6;AO=4;CIGAR=1X3M1X;DP=37;DPB=37;DPRA=2.35294;EPP=11.6962;EPPR=70.3259;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=162;QR=1223;RO=31;RPL=4;RPP=11.6962;RPPR=70.3259;RPR=0;RUN=1;SAF=0;SAP=11.6962;SAR=4;SRF=0;SRP=70.3259;SRR=31;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|1:20:16,4:16:629:4:162:-8.94615,0,-50.9253 0|0:10:8,0:8:317:0:0:0,-2.40824,-28.5101 0|0:7:7,0:7:277:0:0:0,-2.10721,-25.3 dDocent_Contig_965 122 . G A 105.741 . AB=0.193548;ABP=28.2974;AC=1;AF=0.166667;AN=6;AO=6;CIGAR=1X;DP=65;DPB=65;DPRA=1.82353;EPP=16.0391;EPPR=131.127;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=0.833333;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=234;QR=2350;RO=59;RPL=6;RPP=16.0391;RPPR=131.127;RPR=0;RUN=1;SAF=0;SAP=16.0391;SAR=6;SRF=0;SRP=131.127;SRR=59;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:31:25,6:25:1005:6:234:-12.0969,0,-81.4139 0/0:14:14,0:14:549:0:0:0,-4.21442,-49.746 0/0:20:20,0:20:796:0:0:0,-6.0206,-71.9577 dDocent_Contig_966 9 . A T 96.4387 . AB=0.163265;ABP=51.2702;AC=2;AF=0.333333;AN=6;AO=8;CIGAR=1X;DP=57;DPB=57;DPRA=3.0625;EPP=20.3821;EPPR=109.412;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=302;QR=1878;RO=49;RPL=0;RPP=20.3821;RPPR=109.412;RPR=8;RUN=1;SAF=8;SAP=20.3821;SAR=0;SRF=49;SRP=109.412;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:34:30,4:30:1156:4:152:-3.81461,0,-94.1055 0/0:8:8,0:8:309:0:0:0,-2.40824,-28.1731 0/1:15:11,4:11:413:4:150:-9.34992,0,-33.0028 dDocent_Contig_967 58 . A T 1213.48 . 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AB=0.585526;ABP=12.6676;AC=3;AF=0.5;AN=6;AO=89;CIGAR=1X1M1X;DP=152;DPB=152;DPRA=0;EPP=196.271;EPPR=98.5551;GTI=0;LEN=1;MEANALT=1.66667;MQM=60;MQMR=60;NS=3;NUMALT=2;ODDS=0;PAIRED=0.955056;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=3505;QR=1737;RO=44;RPL=0;RPP=196.271;RPPR=98.5551;RPR=89;RUN=1;SAF=89;SAP=196.271;SAR=0;SRF=44;SRP=98.5551;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|1:89:34,40,15:34:1341:40,15:1576,592:-119.414,0,-98.2887,-80.9418,-61.6224,-186.757 0|1:19:6,13,0:6:236:13,0:515,0:-40.9775,0,-15.8931,-42.7836,-19.8065,-62.1963 0|1:44:4,36,4:4:160:36,4:1414,160:-115.077,0,-2.34304,-103.1,-0.000209731,-115.077 dDocent_Contig_979 18 . A G 170.755 . AB=0.214286;ABP=32.7905;AC=1;AF=0.166667;AN=6;AO=9;CIGAR=1X;DP=57;DPB=57;DPRA=5.6;EPP=22.5536;EPPR=105.07;GTI=0;LEN=1;MEANALT=2;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=343;QR=1780;RO=47;RPL=0;RPP=22.5536;RPPR=105.07;RPR=9;RUN=1;SAF=9;SAP=22.5536;SAR=0;SRF=47;SRP=105.07;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:42:32,9:32:1209:9:343:-18.5983,0,-96.4822 0/0:8:8,0:8:293:0:0:0,-2.40824,-26.7151 0/0:7:7,0:7:278:0:0:0,-2.10721,-25.3907 dDocent_Contig_980 56 . G A 1327.8 . AB=0.530612;ABP=3.40914;AC=4;AF=0.666667;AN=6;AO=49;CIGAR=1X;DP=74;DPB=74;DPRA=0;EPP=109.412;EPPR=57.2971;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=1736;QR=872;RO=25;RPL=49;RPP=109.412;RPPR=57.2971;RPR=0;RUN=1;SAF=49;SAP=109.412;SAR=0;SRF=25;SRP=57.2971;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:26:11,15:11:388:15:511:-38.4843,0,-27.4301 0/1:23:12,11:12:419:11:406:-29.9613,0,-31.1128 1/1:25:2,23:2:65:23:819:-67.8575,-1.35272,0 dDocent_Contig_981 43 . T G 2607.48 . AB=0.783019;ABP=76.7584;AC=3;AF=0.5;AN=6;AO=83;CIGAR=1X;DP=106;DPB=106;DPRA=0;EPP=183.243;EPPR=52.9542;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=6.93889e-18;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=3294;QR=879;RO=23;RPL=0;RPP=183.243;RPPR=52.9542;RPR=83;RUN=1;SAF=83;SAP=183.243;SAR=0;SRF=23;SRP=52.9542;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:43:12,31:12:439:31:1226:-97.6694,0,-26.8883 0/1:22:2,20:2:82:20:791:-64.8852,0,-1.15702 0/1:41:9,32:9:358:32:1277:-102.853,0,-20.2365 dDocent_Contig_982 45 . A C 177.434 . AB=0.127119;ABP=145.518;AC=1;AF=0.166667;AN=6;AO=15;CIGAR=1X;DP=193;DPB=193;DPRA=3.14667;EPP=35.5824;EPPR=389.532;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=605;QR=6957;RO=178;RPL=0;RPP=35.5824;RPPR=389.532;RPR=15;RUN=1;SAF=15;SAP=35.5824;SAR=0;SRF=178;SRP=389.532;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:118:103,15:103:4050:15:605:-19.2663,0,-328.985 0/0:22:22,0:22:832:0:0:0,-6.62266,-75.1867 0/0:53:53,0:53:2075:0:0:0,-15.9546,-186.948 dDocent_Contig_983 148 . A T 489.149 . AB=0.4;ABP=7.35324;AC=3;AF=0.5;AN=6;AO=20;CIGAR=1X;DP=50;DPB=50;DPRA=0;EPP=46.4397;EPPR=68.1545;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=760;QR=1166;RO=30;RPL=0;RPP=46.4397;RPPR=68.1545;RPR=20;RUN=1;SAF=0;SAP=46.4397;SAR=20;SRF=0;SRP=68.1545;SRR=30;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:17:14,3:14:546:3:121:-6.16248,0,-44.3589 0/1:12:5,7:5:197:7:278:-21.7782,0,-14.4917 0/1:21:11,10:11:423:10:361:-26.4971,0,-32.0918 dDocent_Contig_984 38 . C T 54.164 . AB=0.131579;ABP=47.8112;AC=1;AF=0.166667;AN=6;AO=6;CIGAR=1X;DP=79;DPB=79;DPRA=1.82353;EPP=16.0391;EPPR=161.528;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=239;QR=2928;RO=73;RPL=0;RPP=16.0391;RPPR=161.528;RPR=6;RUN=1;SAF=6;SAP=16.0391;SAR=0;SRF=73;SRP=161.528;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:38:33,5:33:1333:5:200:-6.93928,0,-108.788 0/0:17:17,0:17:681:0:0:0,-5.11751,-61.6181 0/0:24:23,1:23:914:1:39:0,-3.32816,-78.6652 dDocent_Contig_985 8 . G A 104.076 . AB=0.263158;ABP=12.2676;AC=1;AF=0.166667;AN=6;AO=5;CIGAR=1X;DP=52;DPB=52;DPRA=1.15152;EPP=13.8677;EPPR=105.07;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=192;QR=1791;RO=47;RPL=0;RPP=13.8677;RPPR=105.07;RPR=5;RUN=1;SAF=5;SAP=13.8677;SAR=0;SRF=47;SRP=105.07;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:19:14,5:14:545:5:192:-11.9304,0,-43.6767 0/0:15:15,0:15:561:0:0:0,-4.51545,-50.8216 0/0:18:18,0:18:685:0:0:0,-5.41854,-61.9818 dDocent_Contig_986 113 . C T 125.648 . AB=0.138686;ABP=158.358;AC=3;AF=0.5;AN=6;AO=19;CIGAR=1X;DP=137;DPB=137;DPRA=0;EPP=44.2683;EPPR=259.244;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=6.93889e-18;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=630;QR=3915;RO=118;RPL=0;RPP=44.2683;RPPR=259.244;RPR=19;RUN=1;SAF=0;SAP=44.2683;SAR=19;SRF=0;SRP=259.244;SRR=118;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:76:64,12:64:2174:12:389:-12.4439,0,-173.051 0/1:10:8,2:8:276:2:70:-3.6371,0,-22.1656 0/1:51:46,5:46:1465:5:171:-0.374095,0,-116.772 dDocent_Contig_987 10 . C T 749.189 . AB=0.145553;ABP=407.858;AC=3;AF=0.5;AN=6;AO=54;CIGAR=1X;DP=371;DPB=371;DPRA=0;EPP=120.27;EPPR=691.367;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=2124;QR=12751;RO=317;RPL=0;RPP=120.27;RPPR=691.367;RPR=54;RUN=1;SAF=54;SAP=120.27;SAR=0;SRF=317;SRP=691.367;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:169:137,32:137:5510:32:1276:-64.2312,0,-444.841 0/1:81:72,9:72:2895:9:338:-6.3882,0,-236.261 0/1:121:108,13:108:4346:13:510:-9.82239,0,-354.637 dDocent_Contig_988 98 . N A 81.1951 . AB=0;ABP=0;AC=2;AF=1;AN=2;AO=3;CIGAR=1X;DP=3;DPB=3;DPRA=0;EPP=9.52472;EPPR=0;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=0;NS=1;NUMALT=1;ODDS=6.68461;PAIRED=1;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=87;QR=0;RO=0;RPL=3;RPP=9.52472;RPPR=0;RPR=0;RUN=1;SAF=3;SAP=9.52472;SAR=0;SRF=0;SRP=0;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 1/1:3:0,3:0:0:3:87:-8.11897,-0.90309,0 ./.:.:.:.:.:.:.:. ./.:.:.:.:.:.:.:. dDocent_Contig_989 67 . T A 114.963 . AB=0.272727;ABP=12.8806;AC=2;AF=0.333333;AN=6;AO=6;CIGAR=1X2M1X;DP=35;DPB=35;DPRA=0.846154;EPP=16.0391;EPPR=65.983;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=1.73472e-18;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=232;QR=1095;RO=29;RPL=6;RPP=16.0391;RPPR=65.983;RPR=0;RUN=1;SAF=6;SAP=16.0391;SAR=0;SRF=29;SRP=65.983;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|0:13:13,0:13:496:0:0:0,-3.91339,-44.987 0|1:9:7,2:7:268:2:80:-4.88252,0,-21.7748 0|1:13:9,4:9:331:4:152:-10.1365,0,-26.2265 dDocent_Contig_991 40 . G A 1024.96 . AB=0.26875;ABP=77.3289;AC=3;AF=0.5;AN=6;AO=43;CIGAR=1X;DP=160;DPB=160;DPRA=0;EPP=96.3836;EPPR=257.073;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=1724;QR=4649;RO=117;RPL=0;RPP=96.3836;RPPR=257.073;RPR=43;RUN=1;SAF=43;SAP=96.3836;SAR=0;SRF=117;SRP=257.073;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:81:52,29:52:2067:29:1160:-80.2953,0,-161.837 0/1:47:40,7:40:1570:7:282:-11.6042,0,-127.387 0/1:32:25,7:25:1012:7:282:-16.1196,0,-81.7384 dDocent_Contig_992 98 . N T 7580.78 . AB=0;ABP=0;AC=6;AF=1;AN=6;AO=240;CIGAR=3X;DP=240;DPB=241.333;DPRA=0;EPP=524.164;EPPR=0;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=0;NS=3;NUMALT=1;ODDS=0;PAIRED=0.9875;PAIREDR=0;PAO=4;PQA=127;PQR=0;PRO=0;QA=8417;QR=0;RO=0;RPL=240;RPP=524.164;RPPR=0;RPR=0;RUN=1;SAF=240;SAP=524.164;SAR=0;SRF=0;SRP=0;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 1|1:117:0,117:0:0:117:4101:-368.983,-35.2205,0 1|1:29:0,29:0:0:29:1011:-91.3012,-8.72987,0 1|1:94:0,94:0:0:94:3305:-297.316,-28.2968,0 dDocent_Contig_993 40 . G C 2057.84 . AB=0.06;ABP=171.169;AC=3;AF=0.5;AN=6;AO=6;CIGAR=1X7M;DP=122;DPB=159;DPRA=0;EPP=16.0391;EPPR=92.0407;GTI=0;LEN=1;MEANALT=3;MQM=60;MQMR=60;NS=3;NUMALT=2;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=240;QR=1603;RO=41;RPL=0;RPP=16.0391;RPPR=92.0407;RPR=6;RUN=1;SAF=6;SAP=16.0391;SAR=0;SRF=41;SRP=92.0407;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|1:81:28,48,3:28:1089:48,3:1827,118:-140.915,0,-75.0902,-139.637,-79.8321,-228.23 0|1:22:5,16,0:5:199:16,0:598,0:-47.4362,0,-11.5679,-48.9414,-16.3843,-65.3325 0|1:19:8,8,3:8:315:8,3:309,122:-22.9557,0,-23.4966,-15.2952,-15.8381,-40.31 dDocent_Contig_994 41 . A G 321.466 . AB=0.0601852;ABP=365.928;AC=0;AF=0;AN=6;AO=15;CIGAR=3M1X1M;DP=392;DPB=372.2;DPRA=0;EPP=35.5824;EPPR=743.482;GTI=0;LEN=1;MEANALT=3;MQM=60;MQMR=60;NS=3;NUMALT=2;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=557;QR=13302;RO=341;RPL=0;RPP=35.5824;RPPR=743.482;RPR=15;RUN=1;SAF=15;SAP=35.5824;SAR=0;SRF=341;SRP=743.482;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|0:176:167,5,2:167:6521:5,2:197,69:0,-34.0534,-568.61,-44.6792,-564.512,-580.115 0|0:84:67,15,1:67:2588:15,1:557,39:-25.3917,0,-208.03,-42.3537,-209.34,-254.609 0|0:132:107,13,12:107:4193:13,12:516,449:-10.2778,0,-340.898,-5.74594,-308.06,-346.925 dDocent_Contig_995 15 . C A 97.0707 . AB=0.171429;ABP=35.8306;AC=1;AF=0.166667;AN=6;AO=14;CIGAR=1X;DP=162;DPB=162;DPRA=0;EPP=33.4109;EPPR=322.217;GTI=0;LEN=1;MEANALT=1.33333;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=565;QR=5852;RO=147;RPL=0;RPP=33.4109;RPPR=322.217;RPR=14;RUN=1;SAF=14;SAP=33.4109;SAR=0;SRF=147;SRP=322.217;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:81:75,6:75:2999:6:242:0,-2.22631,-247.828 0/0:46:44,2:44:1768:2:81:0,-6.16165,-151.65 0/1:35:28,6:28:1085:6:242:-11.531,0,-87.3016 dDocent_Contig_996 44 . T C 242.147 . AB=0.124378;ABP=249.337;AC=3;AF=0.5;AN=6;AO=25;CIGAR=1X;DP=201;DPB=201;DPRA=0;EPP=57.2971;EPPR=359.576;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=974;QR=6803;RO=176;RPL=0;RPP=57.2971;RPPR=359.576;RPR=25;RUN=1;SAF=25;SAP=57.2971;SAR=0;SRF=176;SRP=385.189;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:136:119,17:119:4588:17:664:-19.1529,0,-371.967 0/1:20:16,4:16:619:4:158:-8.58005,0,-50.0243 0/1:45:41,4:41:1596:4:152:-0.501765,0,-130.344 dDocent_Contig_997 20 . C T 665.412 . AB=0.163265;ABP=244.31;AC=3;AF=0.5;AN=6;AO=40;CIGAR=1X;DP=245;DPB=245;DPRA=0;EPP=89.8692;EPPR=448.162;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=0.8;PAO=0;PQA=0;PQR=0;PRO=0;QA=1608;QR=8217;RO=205;RPL=0;RPP=89.8692;RPPR=448.162;RPR=40;RUN=1;SAF=40;SAP=89.8692;SAR=0;SRF=205;SRP=448.162;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:177:146,31:146:5856:31:1241:-58.6767,0,-473.535 0/1:14:10,4:10:394:4:164:-10.9355,0,-31.601 0/1:54:49,5:49:1967:5:203:-2.39744,0,-160.969 dDocent_Contig_998 181 . A C 1574.19 . AB=0.495495;ABP=3.02986;AC=3;AF=0.5;AN=6;AO=55;CIGAR=1X;DP=111;DPB=111;DPRA=0;EPP=122.441;EPPR=124.613;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=2171;QR=2219;RO=56;RPL=55;RPP=122.441;RPPR=124.613;RPR=0;RUN=1;SAF=0;SAP=122.441;SAR=55;SRF=0;SRP=124.613;SRR=56;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:72:37,35:37:1455:35:1377:-102.511,0,-109.516 0/1:12:6,6:6:243:6:237:-18.0893,0,-18.6356 0/1:27:13,14:13:521:14:557:-42.3411,0,-39.1081 dDocent_Contig_999 40 . T A 1961.4 . AB=0.411765;ABP=14.5063;AC=3;AF=0.5;AN=6;AO=70;CIGAR=2X;DP=170;DPB=170;DPRA=0;EPP=155.013;EPPR=217.986;GTI=0;LEN=1;MEANALT=1.33333;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=2797;QR=3899;RO=99;RPL=0;RPP=155.013;RPPR=217.986;RPR=70;RUN=1;SAF=70;SAP=155.013;SAR=0;SRF=99;SRP=217.986;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|1:74:43,31:43:1690:31:1247:-90.2249,0,-130.056 0|1:41:21,20:21:813:20:787:-58.8071,0,-61.139 0|1:55:35,19:35:1396:19:763:-52.631,0,-109.544 dDocent_Contig_1000 13 . T C 5416.16 . AB=0.21659;ABP=154.403;AC=1;AF=0.166667;AN=6;AO=49;CIGAR=1M1X1M;DP=252;DPB=305.667;DPRA=0;EPP=109.412;EPPR=92.0407;GTI=0;LEN=1;MEANALT=2.33333;MQM=60;MQMR=60;NS=3;NUMALT=2;ODDS=0;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=1947;QR=1561;RO=41;RPL=0;RPP=109.412;RPPR=92.0407;RPR=49;RUN=1;SAF=49;SAP=109.412;SAR=0;SRF=41;SRP=92.0407;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|1:128:15,85,28:15:590:85,28:3297,1109:-309.084,-42.7415,-65.6852,-222.326,0,-262.43 0|0:35:2,31,2:2:65:31,2:1197,81:-101.804,-4.12566,0,-95.7261,-2.61296,-100.366 0|0:89:24,45,19:24:906:45,19:1724,757:-134.251,0,-60.6892,-79.133,-11.8875,-147.656 dDocent_Contig_1001 42 . A T 53.911 . AB=0.16129;ABP=33.9012;AC=1;AF=0.166667;AN=6;AO=7;CIGAR=1X;DP=79;DPB=79;DPRA=5.14286;EPP=18.2106;EPPR=159.356;GTI=0;LEN=1;MEANALT=1;MQM=55.4286;MQMR=60;NS=3;NUMALT=1;ODDS=3.46945e-18;PAIRED=0;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=256;QR=2712;RO=72;RPL=0;RPP=18.2106;RPPR=159.356;RPR=7;RUN=1;SAF=7;SAP=18.2106;SAR=0;SRF=72;SRP=159.356;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:41:39,2:39:1452:2:76:0,-5.32116,-123.927 0/0:7:7,0:7:266:0:0:0,-2.10721,-24.299 0/1:31:26,5:26:994:5:180:-7.21499,0,-80.4318 dDocent_Contig_1002 33 . T C 322.187 . AB=0.14966;ABP=159.726;AC=2;AF=0.333333;AN=6;AO=25;CIGAR=1X;DP=208;DPB=208;DPRA=0;EPP=57.2971;EPPR=400.39;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=1002;QR=6932;RO=183;RPL=0;RPP=57.2971;RPPR=400.39;RPR=25;RUN=1;SAF=25;SAP=57.2971;SAR=0;SRF=183;SRP=400.39;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:106:89,17:89:3411:17:685:-30.0705,0,-275.202 0/1:41:36,5:36:1338:5:196:-5.671,0,-108.36 0/0:61:58,3:58:2183:3:121:0,-7.08263,-185.409 dDocent_Contig_1003 91 . A G 87.9053 . AB=0.189189;ABP=34.0565;AC=1;AF=0.166667;AN=6;AO=7;CIGAR=1X;DP=96;DPB=96;DPRA=1.25424;EPP=18.2106;EPPR=196.271;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=238;QR=3099;RO=89;RPL=7;RPP=18.2106;RPPR=196.271;RPR=0;RUN=1;SAF=7;SAP=18.2106;SAR=0;SRF=89;SRP=196.271;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:46:46,0:46:1597:0:0:0,-13.8474,-144.018 0/0:13:13,0:13:464:0:0:0,-3.91339,-42.0978 0/1:37:30,7:30:1038:7:238:-10.6144,0,-82.5935 dDocent_Contig_1004 107 . N A 2913.63 . AB=0;ABP=0;AC=6;AF=1;AN=6;AO=97;CIGAR=1X;DP=97;DPB=97;DPRA=0;EPP=213.643;EPPR=0;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=0;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=3222;QR=0;RO=0;RPL=0;RPP=213.643;RPPR=0;RPR=97;RUN=1;SAF=0;SAP=213.643;SAR=97;SRF=0;SRP=0;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 1/1:54:0,54:0:0:54:1782:-160.658,-16.2556,0 1/1:16:0,16:0:0:16:549:-49.7355,-4.81648,0 1/1:27:0,27:0:0:27:891:-80.4932,-8.12781,0 dDocent_Contig_1005 63 . G A 1044.57 . AB=0.616667;ABP=10.1038;AC=3;AF=0.5;AN=6;AO=37;CIGAR=1X;DP=60;DPB=60;DPRA=0;EPP=83.3548;EPPR=52.9542;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=0.913043;PAO=0;PQA=0;PQR=0;PRO=0;QA=1411;QR=879;RO=23;RPL=37;RPP=83.3548;RPPR=52.9542;RPR=0;RUN=1;SAF=37;SAP=83.3548;SAR=0;SRF=23;SRP=52.9542;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:25:7,18:7:267:18:674:-53.4649,0,-16.8665 0/1:11:5,6:5:204:6:237:-18.3916,0,-15.4327 0/1:24:11,13:11:408:13:500:-38.1232,0,-29.8367 dDocent_Contig_1006 56 . T A 5399.81 . AB=0.0490196;ABP=363.39;AC=4;AF=0.666667;AN=6;AO=10;CIGAR=1X2M1X;DP=226;DPB=226;DPRA=4.63636;EPP=24.725;EPPR=94.2121;GTI=0;LEN=1;MEANALT=2.5;MQM=60;MQMR=60;NS=3;NUMALT=2;ODDS=2.77556e-17;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=398;QR=1650;RO=42;RPL=10;RPP=24.725;RPPR=94.2121;RPR=0;RUN=1;SAF=10;SAP=24.725;SAR=0;SRF=42;SRP=94.2121;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|1:137:21,110,6:21:820:110,6:4344,241:-351.112,0,-34.2822,-337.574,-47.5337,-403.171 1|1:22:1,21,0:1:41:21,0:807,0:-68.8535,-2.52809,0,-69.1545,-6.32163,-72.5397 0|1:67:20,40,4:20:789:40,4:1575,157:-123.539,0,-52.875,-116.647,-52.0043,-180.361 dDocent_Contig_1007 14 . A G 95.8524 . AB=0.130435;ABP=84.8654;AC=2;AF=0.333333;AN=6;AO=10;CIGAR=1X1M;DP=95;DPB=95;DPRA=0;EPP=24.725;EPPR=181.071;GTI=0;LEN=1;MEANALT=1.66667;MQM=60;MQMR=60;NS=3;NUMALT=2;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=405;QR=3262;RO=82;RPL=0;RPP=24.725;RPPR=181.071;RPR=10;RUN=1;SAF=10;SAP=24.725;SAR=0;SRF=82;SRP=181.071;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|1:49:41,1,7:41:1629:1,7:34,283:-11.0458,-20.6381,-154.437,0,-131.405,-132.054 0|1:20:18,0,2:18:727:0,2:0,81:-1.66513,-7.08367,-67.0171,0,-60.3379,-59.7358 0|0:26:23,2,1:23:906:2,1:54,41:0,-2.76036,-76.672,-3.49309,-73.8893,-77.8347 dDocent_Contig_1008 111 . T G 2451.16 . AB=0.39322;ABP=32.2258;AC=3;AF=0.5;AN=6;AO=116;CIGAR=1X;DP=295;DPB=295;DPRA=0;EPP=254.901;EPPR=391.704;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=1.38778e-17;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=3762;QR=5887;RO=179;RPL=0;RPP=254.901;RPPR=391.704;RPR=116;RUN=1;SAF=0;SAP=254.901;SAR=116;SRF=0;SRP=391.704;SRR=179;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:156:93,63:93:3016:63:2074:-139.969,0,-224.712 0/1:54:37,17:37:1244:17:541:-32.7387,0,-96.0023 0/1:85:49,36:49:1627:36:1147:-77.9305,0,-121.124 dDocent_Contig_1009 7 . T C 896.519 . AB=0.251534;ABP=90.4154;AC=3;AF=0.5;AN=6;AO=41;CIGAR=1X3M1X3M1X;DP=163;DPB=163;DPRA=0;EPP=92.0407;EPPR=263.587;GTI=0;LEN=1;MEANALT=1.66667;MQM=59;MQMR=60;NS=3;NUMALT=1;ODDS=1.38778e-17;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=1593;QR=4648;RO=120;RPL=0;RPP=92.0407;RPPR=263.587;RPR=41;RUN=1;SAF=41;SAP=92.0407;SAR=0;SRF=120;SRP=263.587;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|1:106:78,28:78:3024:28:1091:-66.5564,0,-240.392 0|1:26:19,6:19:735:6:228:-13.0171,0,-58.62 0|1:31:23,7:23:889:7:274:-15.6013,0,-70.9065 dDocent_Contig_1010 33 . G A 8273.33 . AB=0.312925;ABP=92.3804;AC=2;AF=0.333333;AN=6;AO=92;CIGAR=1X3M1X3M2I1M1X3M1X;DP=294;DPB=307;DPRA=0;EPP=202.786;EPPR=31.2394;GTI=0;LEN=1;MEANALT=3.33333;MQM=60;MQMR=60;NS=3;NUMALT=2;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=3490;QR=511;RO=13;RPL=0;RPP=202.786;RPPR=31.2394;RPR=92;RUN=1;SAF=92;SAP=202.786;SAR=0;SRF=13;SRP=31.2394;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 1|0:196:0,69,127:0:0:69,127:2617,4997:-625.958,-411.404,-390.633,-214.937,0,-176.706 0|0:44:7,7,27:7:276:7,27:258,1036:-82.9214,-63.9368,-84.5409,0,-1.63256,-14.5936 1|0:54:6,16,30:6:235:16,30:615,1153:-123.974,-75.2953,-89.8042,-31.156,0,-41.4513 dDocent_Contig_1011 23 . A G 109.707 . AB=0.142857;ABP=72.8076;AC=2;AF=0.333333;AN=6;AO=14;CIGAR=1X;DP=185;DPB=185;DPRA=0;EPP=33.4109;EPPR=374.332;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=0.714286;PAIREDR=0.888889;PAO=0;PQA=0;PQR=0;PRO=0;QA=536;QR=6840;RO=171;RPL=0;RPP=33.4109;RPPR=374.332;RPR=14;RUN=1;SAF=14;SAP=33.4109;SAR=0;SRF=171;SRP=374.332;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:122:117,5:117:4720:5:173:0,-20.8286,-408.793 0/1:16:14,2:14:541:2:80:-2.77531,0,-44.2073 0/1:47:40,7:40:1579:7:283:-11.6946,0,-128.203 dDocent_Contig_1012 1 . N G 97.967 . AB=0;ABP=0;AC=2;AF=1;AN=2;AO=3;CIGAR=1X;DP=3;DPB=3;DPRA=0;EPP=9.52472;EPPR=0;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=0;NS=1;NUMALT=1;ODDS=6.68461;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=105;QR=0;RO=0;RPL=0;RPP=9.52472;RPPR=0;RPR=3;RUN=1;SAF=0;SAP=9.52472;SAR=3;SRF=0;SRP=0;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 1/1:3:0,3:0:0:3:105:-9.79616,-0.90309,0 ./.:.:.:.:.:.:.:. ./.:.:.:.:.:.:.:. dDocent_Contig_1013 110 . C T 62.5952 . AB=0.192308;ABP=24.391;AC=1;AF=0.166667;AN=6;AO=11;CIGAR=1X;DP=250;DPB=250;DPRA=0;EPP=26.8965;EPPR=519.821;GTI=0;LEN=1;MEANALT=1.33333;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=379;QR=7877;RO=238;RPL=0;RPP=26.8965;RPPR=519.821;RPR=11;RUN=1;SAF=0;SAP=26.8965;SAR=11;SRF=0;SRP=519.821;SRR=238;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:153:149,3:149:4937:3:103:0,-36.3448,-434.954 0/1:26:21,5:21:714:5:173:-8.08343,0,-56.752 0/0:71:68,3:68:2226:3:103:0,-11.7631,-190.993 dDocent_Contig_1014 43 . A G 5061.61 . AB=0.423168;ABP=24.6994;AC=3;AF=0.5;AN=6;AO=179;CIGAR=1X;DP=423;DPB=423;DPRA=0;EPP=391.704;EPPR=532.85;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=7095;QR=9555;RO=244;RPL=0;RPP=391.704;RPPR=532.85;RPR=179;RUN=1;SAF=179;SAP=391.704;SAR=0;SRF=244;SRP=532.85;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:269:154,115:154:6058:115:4539:-327.466,0,-464.041 0/1:43:26,17:26:1022:17:678:-48.4064,0,-79.3239 0/1:111:64,47:64:2475:47:1878:-135.812,0,-189.488 dDocent_Contig_1016 1 . N C 64.5902 . AB=0;ABP=0;AC=2;AF=1;AN=2;AO=2;CIGAR=1X2M2I4M;DP=2;DPB=2.57143;DPRA=0;EPP=7.35324;EPPR=0;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=0;NS=1;NUMALT=1;ODDS=5.99146;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=68;QR=0;RO=0;RPL=0;RPP=7.35324;RPPR=0;RPR=2;RUN=1;SAF=0;SAP=7.35324;SAR=2;SRF=0;SRP=0;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL .:.:.:.:.:.:.:. 1|1:2:0,2:0:0:2:68:-6.45793,-0.60206,0 .:.:.:.:.:.:.:. dDocent_Contig_1017 17 . G C 40668.8 . AB=0;ABP=0;AC=6;AF=1;AN=6;AO=1757;CIGAR=1X3M;DP=1979;DPB=1979.25;DPRA=0;EPP=3570.55;EPPR=76.8404;GTI=0;LEN=1;MEANALT=6;MQM=29.7513;MQMR=56.4412;NS=3;NUMALT=2;ODDS=0;PAIRED=0.0102447;PAIREDR=0;PAO=0.5;PQA=0;PQR=0;PRO=0.5;QA=51788;QR=1325;RO=34;RPL=0;RPP=3818.29;RPPR=76.8404;RPR=1757;RUN=1;SAF=1728;SAP=3570.55;SAR=29;SRF=34;SRP=76.8404;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 1|1:943:22,43,826:22:874:43,826:1714,24136:-1871.82,-1786.33,-1844.09,-177.929,-156.562,0 1|1:358:1,26,313:1:40:26,313:1017,9121:-729.986,-674.528,-669.993,-90.9282,-38.4638,0 1|1:678:11,15,618:11:411:15,618:605,18531:-1464.47,-1431.32,-1460.03,-152.8,-149.573,0 dDocent_Contig_1018 7 . T C 862.639 . AB=0.0769231;ABP=104.067;AC=0;AF=0;AN=6;AO=5;CIGAR=2X;DP=240;DPB=240;DPRA=0;EPP=13.8677;EPPR=228.843;GTI=0;LEN=1;MEANALT=2;MQM=13.6;MQMR=20.0385;NS=3;NUMALT=2;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=194;QR=3972;RO=104;RPL=0;RPP=13.8677;RPPR=228.843;RPR=5;RUN=1;SAF=5;SAP=13.8677;SAR=0;SRF=104;SRP=228.843;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|0:65:23,5,37:23:879:5,37:194,1404:-20.2141,-22.8406,-62.2679,0,-36.6945,-29.8337 0|0:87:49,0,36:49:1863:0,36:0,1384:-50.1983,-64.9487,-124.322,0,-59.4992,-48.6622 0|0:88:32,0,56:32:1230:0,56:0,2132:-21.3744,-31.0074,-75.6346,0,-44.7815,-27.9239 dDocent_Contig_1019 98 . N G 1401.81 . AB=0;ABP=0;AC=6;AF=1;AN=6;AO=68;CIGAR=1X;DP=68;DPB=68;DPRA=0;EPP=142.112;EPPR=0;GTI=0;LEN=1;MEANALT=1;MQM=23.5;MQMR=0;NS=3;NUMALT=1;ODDS=0;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=2340;QR=0;RO=0;RPL=67;RPP=142.112;RPPR=0;RPR=1;RUN=1;SAF=68;SAP=150.67;SAR=0;SRF=0;SRP=0;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 1/1:27:0,27:0:0:27:929:-52.0345,-8.12781,0 1/1:13:0,13:0:0:13:438:-28.9069,-3.91339,0 1/1:28:0,28:0:0:28:973:-58.7622,-8.42884,0 dDocent_Contig_1020 20 . A T 401.162 . AB=0.0508475;ABP=106.394;AC=0;AF=0;AN=6;AO=3;CIGAR=1M1X9M;DP=133;DPB=133.273;DPRA=1.475;EPP=9.52472;EPPR=213.643;GTI=0;LEN=1;MEANALT=4;MQM=60;MQMR=60;NS=3;NUMALT=5;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=123;QR=3768;RO=97;RPL=0;RPP=9.52472;RPPR=213.643;RPR=3;RUN=1;SAF=3;SAP=9.52472;SAR=0;SRF=97;SRP=213.643;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|0:59:36,2,3,15,3,0:36:1390:2,3,15,3,0:80,113,597,123,0:-38.3196,-42.5663,-156.103,-39.9014,-147.447,-153.135,0,-107.547,-104.881,-109.623,-39.0025,-146.552,-143.885,-103.984,-152.239,-49.1567,-156.705,-154.038,-114.138,-153.142,-163.295 0|0:40:34,2,0,3,0,1:34:1322:2,0,3,0,1:81,0,123,0,40:0,-3.55668,-111.57,-10.235,-112.172,-118.852,-0.0794819,-102.019,-108.699,-107.795,-10.235,-112.172,-118.852,-108.699,-118.852,-6.94126,-108.877,-115.557,-105.403,-115.557,-115.256 0|0:34:27,0,0,4,0,3:27:1056:0,0,4,0,3:0,0,163,0,123:-5.3181,-13.4459,-100.254,-13.4459,-100.254,-100.254,0,-86.8051,-86.8051,-85.601,-13.4459,-100.254,-100.254,-86.8051,-100.254,-3.29261,-90.1004,-90.1004,-76.651,-90.1004,-89.1973 dDocent_Contig_1021 10 . C T 94.6078 . AB=0.0826446;ABP=186.078;AC=2;AF=0.333334;AN=6;AO=12;CIGAR=1X4M;DP=161;DPB=161;DPRA=0;EPP=29.068;EPPR=307.016;GTI=0;LEN=1;MEANALT=1.66667;MQM=60;MQMR=60;NS=3;NUMALT=2;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=483;QR=5498;RO=140;RPL=0;RPP=29.068;RPPR=307.016;RPR=12;RUN=1;SAF=12;SAP=29.068;SAR=0;SRF=140;SRP=307.016;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|1:86:72,8,5:72:2840:8,5:322,198:-4.86646,0,-231.248,-10.2482,-217.361,-242.395 0|1:35:30,0,5:30:1173:0,5:0,203:-8.11701,-17.1479,-113.571,0,-96.8264,-95.3212 0|0:40:38,0,2:38:1485:0,2:0,82:0,-11.4391,-133.49,-4.26152,-126.721,-126.119 dDocent_Contig_1022 107 . N A 369.594 . AB=0;ABP=0;AC=4;AF=1;AN=4;AO=12;CIGAR=1X;DP=12;DPB=12;DPRA=0;EPP=29.068;EPPR=0;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=0;NS=2;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=400;QR=0;RO=0;RPL=0;RPP=29.068;RPPR=0;RPR=12;RUN=1;SAF=0;SAP=29.068;SAR=12;SRF=0;SRP=0;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL ./.:.:.:.:.:.:.:. 1/1:4:0,4:0:0:4:136:-12.5758,-1.20412,0 1/1:8:0,8:0:0:8:264:-24.0824,-2.40824,0 dDocent_Contig_1024 26 . T G 2959.63 . AB=0.535294;ABP=4.84966;AC=3;AF=0.5;AN=6;AO=91;CIGAR=8M1X8M;DP=170;DPB=141.765;DPRA=0;EPP=200.614;EPPR=85.5263;GTI=0;LEN=1;MEANALT=3;MQM=60;MQMR=60;NS=3;NUMALT=3;ODDS=2.77556e-17;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=3582;QR=1486;RO=38;RPL=0;RPP=200.614;RPPR=85.5263;RPR=91;RUN=1;SAF=91;SAP=200.614;SAR=0;SRF=38;SRP=85.5263;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|1:94:12,7,20,54:12:468:7,20,54:279,697,2129:-189.733,-170.368,-206.728,-136.682,-152.171,-169.127,-18.1824,-33.6759,0,-40.4035 0|1:30:6,1,6,17:6:237:1,6,17:36,212,663:-52.7135,-51.5831,-70.7879,-37.2633,-53.8317,-54.9616,0,-16.5852,-2.27328,-14.4041 0|1:46:20,0,6,20:20:781:0,6,20:0,192,790:-59.0382,-65.0588,-129.268,-49.611,-113.812,-112.006,0,-64.2574,-48.8085,-58.2368 dDocent_Contig_1025 7 . T A 1281.54 . AB=0.47;ABP=3.79203;AC=3;AF=0.5;AN=6;AO=47;CIGAR=1X;DP=100;DPB=100;DPRA=0;EPP=105.07;EPPR=113.755;GTI=0;LEN=1;MEANALT=1.66667;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=1808;QR=1945;RO=51;RPL=0;RPP=105.07;RPPR=113.755;RPR=47;RUN=1;SAF=47;SAP=105.07;SAR=0;SRF=51;SRP=113.755;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:71:38,32:38:1442:32:1232:-89.8384,0,-108.722 0/1:9:5,3:5:195:3:115:-8.01841,0,-15.226 0/1:20:8,12:8:308:12:461:-35.8198,0,-22.0612 dDocent_Contig_1027 159 . C A 84.6842 . AB=0.110169;ABP=158.767;AC=1;AF=0.166667;AN=6;AO=13;CIGAR=1X;DP=132;DPB=132;DPRA=16.8571;EPP=31.2394;EPPR=261.416;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=502;QR=4644;RO=119;RPL=13;RPP=31.2394;RPPR=261.416;RPR=0;RUN=1;SAF=0;SAP=31.2394;SAR=13;SRF=0;SRP=261.416;SRR=119;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:118:105,13:105:4083:13:502:-9.99127,0,-331.934 0/0:8:8,0:8:317:0:0:0,-2.40824,-28.8965 0/0:6:6,0:6:244:0:0:0,-1.80618,-22.3388 dDocent_Contig_1028 15 . T G 215.163 . AB=0.16092;ABP=89.8942;AC=2;AF=0.333333;AN=6;AO=16;CIGAR=1X;DP=119;DPB=119;DPRA=0;EPP=37.7539;EPPR=226.672;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=6.93889e-18;PAIRED=0;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=640;QR=4085;RO=103;RPL=0;RPP=37.7539;RPPR=226.672;RPR=16;RUN=1;SAF=16;SAP=37.7539;SAR=0;SRF=103;SRP=226.672;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:74:63,11:63:2509:11:443:-17.9499,0,-203.679 0/1:13:10,3:10:394:3:118:-7.08933,0,-31.9009 0/0:32:30,2:30:1182:2:79:0,-2.13533,-99.1634 dDocent_Contig_1029 20 . A T 981.82 . AB=0.166667;ABP=338.865;AC=3;AF=0.5;AN=6;AO=58;CIGAR=1X;DP=348;DPB=348;DPRA=0;EPP=128.956;EPPR=630.566;GTI=0;LEN=1;MEANALT=1.33333;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=2306;QR=11568;RO=289;RPL=0;RPP=128.956;RPPR=630.566;RPR=58;RUN=1;SAF=58;SAP=128.956;SAR=0;SRF=289;SRP=630.566;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:216:179,37:179:7154:37:1476:-68.0591,0,-578.486 0/1:47:35,12:35:1393:12:472:-28.6773,0,-111.472 0/1:85:75,9:75:3021:9:358:-6.96849,0,-246.359 dDocent_Contig_1030 52 . A T 83.266 . AB=0.235294;ABP=13.3567;AC=1;AF=0.166667;AN=6;AO=4;CIGAR=1X;DP=30;DPB=30;DPRA=2.61538;EPP=11.6962;EPPR=59.4686;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=1.73472e-18;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=162;QR=1045;RO=26;RPL=4;RPP=11.6962;RPPR=59.4686;RPR=0;RUN=1;SAF=4;SAP=11.6962;SAR=0;SRF=26;SRP=59.4686;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:17:13,4:13:515:4:162:-9.84945,0,-41.5779 0/0:6:6,0:6:246:0:0:0,-1.80618,-22.5201 0/0:7:7,0:7:284:0:0:0,-2.10721,-25.934 dDocent_Contig_1031 8 . G A 31.0288 . AB=0.133333;ABP=38.0434;AC=1;AF=0.166667;AN=6;AO=4;CIGAR=1X;DP=116;DPB=116;DPRA=0.697674;EPP=11.6962;EPPR=246.215;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=0.991071;PAO=0;PQA=0;PQR=0;PRO=0;QA=151;QR=4312;RO=112;RPL=0;RPP=11.6962;RPPR=246.215;RPR=4;RUN=1;SAF=4;SAP=11.6962;SAR=0;SRF=112;SRP=246.215;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:70:70,0:70:2704:0:0:0,-21.0721,-243.541 0/0:16:16,0:16:608:0:0:0,-4.81648,-55.0576 0/1:30:26,4:26:1000:4:151:-4.92645,0,-81.2797 dDocent_Contig_1032 87 . A T 122.091 . AB=0.195122;ABP=36.112;AC=1;AF=0.166667;AN=6;AO=14;CIGAR=1X;DP=164;DPB=164;DPRA=0;EPP=33.4109;EPPR=326.56;GTI=0;LEN=1;MEANALT=1.33333;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=0.973154;PAO=0;PQA=0;PQR=0;PRO=0;QA=500;QR=5103;RO=149;RPL=14;RPP=33.4109;RPPR=326.56;RPR=0;RUN=1;SAF=14;SAP=33.4109;SAR=0;SRF=149;SRP=326.56;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:79:76,3:76:2592:3:106:0,-13.8922,-223.646 0/1:41:32,8:32:1126:8:287:-14.033,0,-89.529 0/0:44:41,3:41:1385:3:107:0,-3.26315,-114.962 dDocent_Contig_1033 93 . T C 17034.2 . AB=0.139477;ABP=909.569;AC=3;AF=0.5;AN=6;AO=112;CIGAR=1X2M1X;DP=803;DPB=907;DPRA=0;EPP=246.215;EPPR=122.441;GTI=0;LEN=1;MEANALT=7.66667;MQM=51.8304;MQMR=58.4909;NS=3;NUMALT=2;ODDS=2.22045e-16;PAIRED=0.866071;PAIREDR=0.854545;PAO=382;PQA=9968;PQR=146;PRO=10.5;QA=3737;QR=1859;RO=55;RPL=112;RPP=246.215;RPPR=122.441;RPR=0;RUN=1;SAF=112;SAP=246.215;SAR=0;SRF=55;SRP=122.441;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 1|0:277:21,37,207:21:686:37,207:1246,7050:-605.684,-512.627,-556.8,-44.0731,0,-37.0759 1|0:221:13,28,156:13:447:28,156:921,5307:-456.977,-393.06,-420.934,-31.5295,0,-20.8762 1|0:305:21,47,216:21:726:47,216:1570,7334:-646.28,-526.444,-570.946,-67.5131,0,-61.1451 dDocent_Contig_1034 15 . A G 6613.22 . AB=0.494774;ABP=3.07839;AC=3;AF=0.5;AN=6;AO=142;CIGAR=1X1M1D5M1X7M;DP=287;DPB=271.188;DPRA=0;EPP=311.359;EPPR=76.8404;GTI=0;LEN=1;MEANALT=4;MQM=60;MQMR=60;NS=3;NUMALT=2;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=5626;QR=1344;RO=34;RPL=0;RPP=311.359;RPPR=76.8404;RPR=142;RUN=1;SAF=142;SAP=311.359;SAR=0;SRF=34;SRP=76.8404;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 1|0:184:21,100,56:21:829:100,56:3984,2157:-430.598,-108.86,-146.973,-259.85,0,-311.205 1|0:28:0,15,13:0:0:15,13:593,491:-89.4176,-40.6101,-36.0947,-49.193,0,-45.2796 1|0:75:13,27,33:13:515:27,33:1049,1300:-146.829,-64.5544,-98.8179,-43.7972,0,-76.2567 dDocent_Contig_1035 88 . T G 63.9984 . AB=0.375;ABP=4.09604;AC=1;AF=0.166667;AN=6;AO=4;CIGAR=1X;DP=37;DPB=37;DPRA=1.55556;EPP=11.6962;EPPR=74.6689;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=151;QR=1229;RO=33;RPL=4;RPP=11.6962;RPPR=74.6689;RPR=0;RUN=1;SAF=4;SAP=11.6962;SAR=0;SRF=33;SRP=74.6689;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:20:19,1:19:712:1:37:0,-2.32277,-60.707 0/1:8:5,3:5:195:3:114:-8.22374,0,-15.516 0/0:9:9,0:9:322:0:0:0,-2.70927,-29.3218 dDocent_Contig_1036 157 . C T 2922.89 . AB=0.702128;ABP=53.0466;AC=3;AF=0.5;AN=6;AO=99;CIGAR=1X;DP=141;DPB=141;DPRA=0;EPP=217.986;EPPR=94.2121;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=6.93889e-18;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=3771;QR=1524;RO=42;RPL=0;RPP=217.986;RPPR=94.2121;RPR=99;RUN=1;SAF=0;SAP=217.986;SAR=99;SRF=0;SRP=94.2121;SRR=42;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:86:27,59:27:982:59:2269:-178.519,0,-62.77 0/1:20:3,17:3:93:17:621:-50.1898,0,-2.65297 0/1:35:12,23:12:449:23:881:-69.0721,0,-30.215 dDocent_Contig_1037 14 . G A 697.96 . AB=0.13125;ABP=191.983;AC=1;AF=0.166667;AN=6;AO=21;CIGAR=1X1M1X;DP=160;DPB=160;DPRA=0;EPP=48.6112;EPPR=250.558;GTI=0;LEN=1;MEANALT=2;MQM=60;MQMR=60;NS=3;NUMALT=2;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=832;QR=4349;RO=114;RPL=0;RPP=48.6112;RPPR=250.558;RPR=21;RUN=1;SAF=21;SAP=48.6112;SAR=0;SRF=114;SRP=250.558;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|0:101:73,8,20:73:2803:8,20:322,764:-40.6885,-36.1194,-263.787,0,-203.517,-224.037 0|0:24:21,1,2:21:789:1,2:40,80:-0.268321,-3.29487,-67.6034,0,-61.3124,-64.0065 0|1:35:20,12,3:20:757:12,3:470,116:-32.6277,0,-58.4364,-29.1211,-52.5194,-90.2657 dDocent_Contig_1038 37 . G A 31.4315 . AB=0.12963;ABP=67.3502;AC=2;AF=0.333333;AN=6;AO=9;CIGAR=1X;DP=99;DPB=99;DPRA=0;EPP=22.5536;EPPR=198.443;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=325;QR=3628;RO=90;RPL=0;RPP=22.5536;RPPR=198.443;RPR=9;RUN=1;SAF=9;SAP=22.5536;SAR=0;SRF=90;SRP=198.443;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:45:43,2:43:1746:2:79:0,-6.04911,-149.854 0/1:21:18,3:18:714:3:115:-4.40158,0,-58.2631 0/1:33:29,4:29:1168:4:131:-2.17661,0,-95.4656 dDocent_Contig_1039 15 . T C 76.8267 . AB=0.153846;ABP=43.6001;AC=1;AF=0.166667;AN=6;AO=7;CIGAR=1X;DP=134;DPB=134;DPRA=0.358974;EPP=18.2106;EPPR=278.787;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=59.9291;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=0.976378;PAO=0;PQA=0;PQR=0;PRO=0;QA=273;QR=5091;RO=127;RPL=0;RPP=18.2106;RPPR=278.787;RPR=7;RUN=1;SAF=7;SAP=18.2106;SAR=0;SRF=127;SRP=278.787;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:78:78,0:78:3144:0:0:0,-23.4803,-283.016 0/0:17:16,1:16:632:1:41:0,-1.02294,-53.1186 0/1:39:33,6:33:1315:6:232:-9.50644,0,-106.875 dDocent_Contig_1040 25 . C A 35.2812 . AB=0.15;ABP=24.2907;AC=1;AF=0.166667;AN=6;AO=3;CIGAR=1X;DP=66;DPB=66;DPRA=0.869565;EPP=9.52472;EPPR=139.813;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=122;QR=2535;RO=63;RPL=0;RPP=9.52472;RPPR=139.813;RPR=3;RUN=1;SAF=3;SAP=9.52472;SAR=0;SRF=63;SRP=139.813;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:38:38,0:38:1525:0:0:0,-11.4391,-137.489 0/0:8:8,0:8:324:0:0:0,-2.40824,-29.5294 0/1:20:17,3:17:686:3:122:-5.35189,0,-56.0476 dDocent_Contig_1041 20 . C A 138.791 . AB=0.3125;ABP=7.89611;AC=2;AF=0.333334;AN=6;AO=5;CIGAR=1X1M;DP=47;DPB=47;DPRA=0.888889;EPP=13.8677;EPPR=81.1833;GTI=0;LEN=1;MEANALT=2;MQM=60;MQMR=60;NS=3;NUMALT=2;ODDS=3.46945e-18;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=195;QR=1377;RO=36;RPL=0;RPP=13.8677;RPPR=81.1833;RPR=5;RUN=1;SAF=5;SAP=13.8677;SAR=0;SRF=36;SRP=81.1833;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|0:18:18,0,0:18:686:0,0:0,0:0,-5.41854,-62.0611,-5.41854,-62.0611,-62.0611 0|1:16:7,4,5:7:277:4,5:164,195:-13.9074,-2.46947,-24.0654,0,-9.24622,-21.2825 0|1:13:11,2,0:11:414:2,0:78,0:-3.48939,0,-33.6894,-6.80072,-34.2915,-40.7046 dDocent_Contig_1042 67 . A T 2666.94 . AB=0.559006;ABP=7.87925;AC=3;AF=0.5;AN=6;AO=90;CIGAR=1X;DP=161;DPB=161;DPRA=0;EPP=198.443;EPPR=157.185;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=3554;QR=2840;RO=71;RPL=90;RPP=198.443;RPPR=157.185;RPR=0;RUN=1;SAF=90;SAP=198.443;SAR=0;SRF=71;SRP=157.185;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:88:42,46:42:1688:46:1796:-135.353,0,-125.65 0/1:32:8,24:8:325:24:959:-76.9798,0,-19.9865 0/1:41:21,20:21:827:20:799:-59.8836,0,-62.4047 dDocent_Contig_1043 55 . G A 695.889 . AB=0.198864;ABP=141.639;AC=2;AF=0.333333;AN=6;AO=35;CIGAR=1X;DP=192;DPB=192;DPRA=5.5;EPP=79.0118;EPPR=341.76;GTI=0;LEN=1;MEANALT=1.5;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=1395;QR=6211;RO=156;RPL=35;RPP=79.0118;RPPR=341.76;RPR=0;RUN=1;SAF=35;SAP=79.0118;SAR=0;SRF=156;SRP=341.76;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:120:97,22:97:3844:22:885:-43.7254,0,-309.739 0/0:16:16,0:16:642:0:0:0,-4.81648,-58.1138 0/1:56:43,13:43:1725:13:510:-29.3863,0,-138.609 dDocent_Contig_1044 137 . A T 135.771 . AB=0.228571;ABP=25.4075;AC=2;AF=0.333333;AN=6;AO=17;CIGAR=1X;DP=174;DPB=174;DPRA=0;EPP=39.9253;EPPR=343.931;GTI=0;LEN=1;MEANALT=1;MQM=40;MQMR=40;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=687;QR=6174;RO=157;RPL=0;RPP=39.9253;RPPR=343.931;RPR=17;RUN=1;SAF=0;SAP=39.9253;SAR=17;SRF=0;SRP=343.931;SRR=157;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:139:130,9:130:5132:9:361:0,-11.4998,-396.628 0/1:10:8,2:8:303:2:82:-4.10732,0,-22.6569 0/1:25:19,6:19:739:6:244:-12.9915,0,-54.4438 dDocent_Contig_1045 18 . T C 2724.92 . AB=0.696;ABP=44.7199;AC=3;AF=0.5;AN=6;AO=87;CIGAR=1X;DP=125;DPB=125;DPRA=0;EPP=191.928;EPPR=85.5263;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=6.93889e-18;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=3498;QR=1475;RO=38;RPL=0;RPP=191.928;RPPR=85.5263;RPR=87;RUN=1;SAF=87;SAP=191.928;SAR=0;SRF=38;SRP=85.5263;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:82:20,62:20:800:62:2507:-201.076,0,-47.6305 0/1:13:3,10:3:97:10:403:-32.7168,0,-5.1323 0/1:30:15,15:15:578:15:588:-44.2223,0,-43.3213 dDocent_Contig_1046 10 . A G 240.835 . AB=0.125;ABP=208.214;AC=1;AF=0.166667;AN=6;AO=25;CIGAR=1X;DP=315;DPB=315;DPRA=0;EPP=57.2971;EPPR=632.737;GTI=0;LEN=1;MEANALT=1;MQM=59.84;MQMR=59.0517;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=0.996552;PAO=0;PQA=0;PQR=0;PRO=0;QA=1004;QR=11547;RO=290;RPL=0;RPP=57.2971;RPPR=632.737;RPR=25;RUN=1;SAF=25;SAP=57.2971;SAR=0;SRF=290;SRP=632.737;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:168:147,21:147:5875:21:843:-25.6064,0,-473.736 0/0:57:56,1:56:2232:1:41:0,-13.0673,-194.745 0/0:90:87,3:87:3440:3:120:0,-15.9054,-298.466 dDocent_Contig_1047 64 . T A 766.005 . AB=0.365854;ABP=15.8273;AC=3;AF=0.5;AN=6;AO=30;CIGAR=1X;DP=82;DPB=82;DPRA=0;EPP=68.1545;EPPR=115.927;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=6.93889e-18;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=1175;QR=2059;RO=52;RPL=30;RPP=68.1545;RPPR=115.927;RPR=0;RUN=1;SAF=30;SAP=68.1545;SAR=0;SRF=52;SRP=115.927;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:47:36,11:36:1429:11:439:-25.7151,0,-114.715 0/1:23:11,12:11:438:12:476:-36.266,0,-32.8522 0/1:12:5,7:5:192:7:260:-20.1422,0,-14.0374 dDocent_Contig_1048 21 . A T 2436.11 . AB=0.0784314;ABP=81.7368;AC=0;AF=0;AN=6;AO=4;CIGAR=1X2M1X;DP=131;DPB=131;DPRA=0;EPP=11.6962;EPPR=102.898;GTI=0;LEN=1;MEANALT=2;MQM=60;MQMR=60;NS=3;NUMALT=2;ODDS=1.38778e-17;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=160;QR=1817;RO=46;RPL=0;RPP=11.6962;RPPR=102.898;RPR=4;RUN=1;SAF=4;SAP=11.6962;SAR=0;SRF=46;SRP=102.898;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|0:80:23,0,57:23:898:0,57:0,2233:-177.069,-183.993,-257.809,0,-74.2069,-57.0481 0|0:22:11,2,9:11:440:2,9:79,359:-26.2576,-23.0686,-58.7121,0,-29.7489,-33.5398 0|0:29:12,2,15:12:479:2,15:81,600:-45.8076,-42.7402,-81.5884,0,-32.7657,-34.9302 dDocent_Contig_1049 29 . G T 456.036 . AB=0.222222;ABP=69.3608;AC=3;AF=0.5;AN=6;AO=22;CIGAR=1X;DP=99;DPB=99;DPRA=0;EPP=50.7827;EPPR=170.214;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=873;QR=3009;RO=77;RPL=0;RPP=50.7827;RPPR=170.214;RPR=22;RUN=1;SAF=22;SAP=50.7827;SAR=0;SRF=77;SRP=170.214;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:50:36,14:36:1401:14:551:-34.8792,0,-111.286 0/1:23:21,2:21:820:2:81:-0.762044,0,-67.1896 0/1:26:20,6:20:788:6:241:-14.239,0,-63.4047 dDocent_Contig_1050 8 . G A 427.342 . AB=0.15544;ABP=202.032;AC=1;AF=0.166667;AN=6;AO=40;CIGAR=1X;DP=328;DPB=328;DPRA=0;EPP=89.8692;EPPR=628.394;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=1.38778e-17;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=1518;QR=11087;RO=288;RPL=0;RPP=89.8692;RPPR=628.394;RPR=40;RUN=1;SAF=40;SAP=89.8692;SAR=0;SRF=288;SRP=628.394;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:193:163,30:163:6294:30:1134:-44.257,0,-508.274 0/0:32:30,2:30:1163:2:78:0,-2.22949,-97.5653 0/0:103:95,8:95:3630:8:306:0,-3.10632,-298.918 dDocent_Contig_1051 12 . A C 365.432 . AB=0.271186;ABP=29.8409;AC=3;AF=0.5;AN=6;AO=16;CIGAR=1X;DP=59;DPB=59;DPRA=0;EPP=37.7539;EPPR=96.3836;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=652;QR=1660;RO=43;RPL=0;RPP=37.7539;RPPR=96.3836;RPR=16;RUN=1;SAF=16;SAP=37.7539;SAR=0;SRF=43;SRP=96.3836;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:23:19,4:19:715:4:162:-8.04306,0,-57.7416 0/1:18:9,9:9:351:9:367:-27.9767,0,-26.5299 0/1:18:15,3:15:594:3:123:-6.04625,0,-48.3811 dDocent_Contig_1053 24 . A T 866.506 . AB=0.340206;ABP=24.5235;AC=2;AF=0.333333;AN=6;AO=42;CIGAR=1X;DP=199;DPB=199;DPRA=0;EPP=94.2121;EPPR=343.931;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=1.38778e-17;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=1642;QR=6213;RO=157;RPL=0;RPP=94.2121;RPPR=343.931;RPR=42;RUN=1;SAF=42;SAP=94.2121;SAR=0;SRF=157;SRP=343.931;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:102:93,9:93:3693:9:323:0,-1.30474,-302.999 0/1:49:30,19:30:1178:19:750:-53.0709,0,-91.5476 0/1:48:34,14:34:1342:14:569:-37.1025,0,-106.593 dDocent_Contig_1054 84 . A T 3859.23 . AB=0.730769;ABP=15.0369;AC=5;AF=0.833333;AN=6;AO=122;CIGAR=1X;DP=136;DPB=136;DPRA=0;EPP=267.93;EPPR=33.4109;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=4657;QR=523;RO=14;RPL=122;RPP=267.93;RPPR=33.4109;RPR=0;RUN=1;SAF=122;SAP=267.93;SAR=0;SRF=14;SRP=33.4109;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 1/1:93:7,86:7:270:86:3304:-272.834,-3.33026,0 1/1:17:0,17:0:0:17:654:-59.1968,-5.11751,0 0/1:26:7,19:7:253:19:699:-55.4153,0,-15.2925 dDocent_Contig_1055 210 . N G 1475.12 . AB=0;ABP=0;AC=6;AF=1;AN=6;AO=42;CIGAR=1X;DP=42;DPB=42;DPRA=0;EPP=94.2121;EPPR=0;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=0;NS=3;NUMALT=1;ODDS=1.69407e-21;PAIRED=1;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=1624;QR=0;RO=0;RPL=42;RPP=94.2121;RPPR=0;RPR=0;RUN=1;SAF=0;SAP=94.2121;SAR=42;SRF=0;SRP=0;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 1/1:35:0,35:0:0:35:1393:-125.628,-10.5361,0 1/1:3:0,3:0:0:3:69:-6.4396,-0.90309,0 1/1:4:0,4:0:0:4:162:-14.967,-1.20412,0 dDocent_Contig_1056 24 . T A 386.165 . AB=0.267442;ABP=43.4098;AC=2;AF=0.333333;AN=6;AO=25;CIGAR=1X;DP=119;DPB=119;DPRA=0;EPP=22.5536;EPPR=207.129;GTI=0;LEN=1;MEANALT=1;MQM=49.8;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=0.8;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=954;QR=3704;RO=94;RPL=0;RPP=57.2971;RPPR=207.129;RPR=25;RUN=1;SAF=20;SAP=22.5536;SAR=5;SRF=94;SRP=207.129;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:34:30,4:30:1146:4:149:-3.53224,0,-93.177 0/0:33:31,2:31:1238:2:76:0,-2.71932,-104.48 0/1:52:33,19:33:1320:19:729:-38.6029,0,-103.408 dDocent_Contig_1057 14 . T C 668.781 . AB=0.162791;ABP=257.83;AC=3;AF=0.5;AN=6;AO=42;CIGAR=1X;DP=258;DPB=258;DPRA=0;EPP=94.2121;EPPR=472.048;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=1.38778e-17;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=1656;QR=8095;RO=216;RPL=0;RPP=94.2121;RPPR=472.048;RPR=42;RUN=1;SAF=42;SAP=94.2121;SAR=0;SRF=216;SRP=472.048;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:133:110,23:110:4102:23:893:-40.6384,0,-329.228 0/1:55:48,7:48:1776:7:279:-8.92413,0,-143.542 0/1:70:58,12:58:2217:12:484:-22.8384,0,-178.683 dDocent_Contig_1058 17 . G A 92.973 . AB=0.145833;ABP=55.3066;AC=1;AF=0.166667;AN=6;AO=20;CIGAR=1X;DP=272;DPB=272;DPRA=0;EPP=46.4397;EPPR=548.05;GTI=0;LEN=1;MEANALT=1.33333;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=785;QR=9944;RO=251;RPL=0;RPP=46.4397;RPPR=548.05;RPR=20;RUN=1;SAF=20;SAP=46.4397;SAR=0;SRF=251;SRP=548.05;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:140:131,8:131:5185:8:320:0,-13.0842,-437.34 0/1:48:41,7:41:1626:7:280:-11.1212,0,-132.13 0/0:84:79,5:79:3133:5:185:0,-8.28413,-265.041 dDocent_Contig_1059 9 . T C 37.8355 . AB=0.176471;ABP=18.4661;AC=1;AF=0.166667;AN=6;AO=10;CIGAR=1X;DP=265;DPB=265;DPRA=0;EPP=24.725;EPPR=554.564;GTI=0;LEN=1;MEANALT=1.33333;MQM=60;MQMR=59.8465;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=387;QR=9756;RO=254;RPL=0;RPP=24.725;RPPR=554.564;RPR=10;RUN=1;SAF=10;SAP=24.725;SAR=0;SRF=254;SRP=554.564;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:175:170,4:170:6520:4:156:0,-38.3516,-570.663 0/1:17:14,3:14:538:3:115:-5.60738,0,-43.6474 0/0:73:70,3:70:2698:3:116:0,-11.1575,-232.185 dDocent_Contig_1060 119 . G T 63.4745 . AB=0.210526;ABP=16.8392;AC=1;AF=0.166667;AN=6;AO=4;CIGAR=1X;DP=35;DPB=35;DPRA=2.375;EPP=11.6962;EPPR=70.3259;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=147;QR=1142;RO=31;RPL=0;RPP=11.6962;RPPR=70.3259;RPR=4;RUN=1;SAF=0;SAP=11.6962;SAR=4;SRF=0;SRP=70.3259;SRR=31;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:19:15,4:15:555:4:147:-7.87031,0,-44.5709 0/0:7:7,0:7:258:0:0:0,-2.10721,-23.5751 0/0:9:9,0:9:329:0:0:0,-2.70927,-29.9589 dDocent_Contig_1061 1 . N G 76.8682 . AB=0;ABP=0;AC=2;AF=1;AN=2;AO=2;CIGAR=1X;DP=2;DPB=2;DPRA=0;EPP=7.35324;EPPR=0;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=0;NS=1;NUMALT=1;ODDS=5.99146;PAIRED=1;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=81;QR=0;RO=0;RPL=0;RPP=7.35324;RPPR=0;RPR=2;RUN=1;SAF=2;SAP=7.35324;SAR=0;SRF=0;SRP=0;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL ./.:.:.:.:.:.:.:. ./.:.:.:.:.:.:.:. 1/1:2:0,2:0:0:2:81:-7.68573,-0.60206,0 dDocent_Contig_1062 26 . C A 80.1943 . AB=0.0952381;ABP=32.8939;AC=1;AF=0.166667;AN=6;AO=2;CIGAR=1M5I1X9M1X22M;DP=87;DPB=90.2353;DPRA=0;EPP=7.35324;EPPR=74.6689;GTI=0;LEN=1;MEANALT=12;MQM=60;MQMR=60;NS=3;NUMALT=5;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=70;QR=1267;RO=33;RPL=0;RPP=7.35324;RPPR=74.6689;RPR=2;RUN=1;SAF=2;SAP=7.35324;SAR=0;SRF=33;SRP=74.6689;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|0:49:18,3,0,0,4,0:18:697:3,0,0,4,0:117,0,0,150,0:-6.88392,-2.67225,-59.0796,-12.3025,-59.9827,-69.6046,-12.3025,-59.9827,-69.6046,-69.6046,0,-47.69,-57.3128,-57.3128,-56.1087,-12.3025,-59.9827,-69.6046,-69.6046,-57.3128,-69.6046 0|1:17:9,1,0,0,0,0:9:341:1,0,0,0,0:37,0,0,0,0:-0.340584,0,-27.7629,-3.04985,-28.0639,-31.0954,-3.04985,-28.0639,-31.0954,-31.0954,-3.04985,-28.0639,-31.0954,-31.0954,-31.0954,-3.04985,-28.0639,-31.0954,-31.0954,-31.0954,-31.0954 0|0:21:6,1,2,2,0,2:6:229:1,2,2,0,2:39,14,70,0,78:-4.62811,-3.21795,-21.7496,-5.803,-21.4157,-24.0242,-0.722405,-16.3471,-18.9256,-18.9572,-6.43429,-22.0506,-24.6263,-19.5593,-25.2619,0,-15.6264,-18.2046,-13.1341,-18.8388,-18.2368 dDocent_Contig_1063 14 . A G 1359.64 . AB=0.245059;ABP=145.838;AC=3;AF=0.5;AN=6;AO=62;CIGAR=2M1D4M1X;DP=253;DPB=242.875;DPRA=0;EPP=137.642;EPPR=350.446;GTI=0;LEN=1;MEANALT=4;MQM=60;MQMR=60;NS=3;NUMALT=3;ODDS=0;PAIRED=1;PAIREDR=0.975;PAO=0;PQA=0;PQR=0;PRO=0;QA=2312;QR=6182;RO=160;RPL=0;RPP=137.642;RPPR=350.446;RPR=62;RUN=1;SAF=62;SAP=137.642;SAR=0;SRF=160;SRP=350.446;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|1:163:108,2,32,9:108:4189:2,32,9:76,1185,337:-64.4272,-90.7051,-434.271,0,-337.937,-334.537,-69.3393,-407.275,-316.572,-410.799 0|1:33:27,0,6,0:27:1036:0,6,0:0,232,0:-11.3151,-19.4429,-104.476,0,-85.4193,-83.6131,-19.4429,-104.476,-85.4193,-104.476 0|1:57:25,4,24,0:25:957:4,24,0:156,895,0:-65.7445,-60.4439,-137.779,0,-65.7241,-71.3246,-73.2703,-138.983,-78.5493,-151.808 dDocent_Contig_1065 43 . C T 732.811 . AB=0.170732;ABP=234.669;AC=3;AF=0.5;AN=6;AO=42;CIGAR=1X;DP=246;DPB=246;DPRA=0;EPP=94.2121;EPPR=445.991;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=1.38778e-17;PAIRED=1;PAIREDR=0.955882;PAO=0;PQA=0;PQR=0;PRO=0;QA=1687;QR=8154;RO=204;RPL=0;RPP=94.2121;RPPR=445.991;RPR=42;RUN=1;SAF=42;SAP=94.2121;SAR=0;SRF=204;SRP=445.991;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:113:98,15:98:3951:15:598:-20.1416,0,-321.549 0/1:49:37,12:37:1473:12:481:-28.8909,0,-118.067 0/1:84:69,15:69:2730:15:608:-29.7714,0,-220.524 dDocent_Contig_1067 90 . G A 441.466 . AB=0.257732;ABP=52.4617;AC=3;AF=0.5;AN=6;AO=25;CIGAR=1X;DP=97;DPB=97;DPRA=0;EPP=57.2971;EPPR=159.356;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=865;QR=2479;RO=72;RPL=25;RPP=57.2971;RPPR=159.356;RPR=0;RUN=1;SAF=25;SAP=57.2971;SAR=0;SRF=72;SRP=159.356;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:53:38,15:38:1311:15:521:-31.2651,0,-102.337 0/1:22:15,7:15:507:7:239:-15.2213,0,-39.3287 0/1:22:19,3:19:661:3:105:-3.1735,0,-53.1926 dDocent_Contig_1068 87 . A T 186.879 . AB=0.177778;ABP=84.1751;AC=2;AF=0.333333;AN=6;AO=17;CIGAR=1X;DP=150;DPB=150;DPRA=0;EPP=39.9253;EPPR=291.816;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=576;QR=4480;RO=133;RPL=17;RPP=39.9253;RPPR=291.816;RPR=0;RUN=1;SAF=17;SAP=39.9253;SAR=0;SRF=133;SRP=291.816;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:60:59,1:59:1995:1:34:0,-14.6629,-176.428 0/1:55:43,12:43:1415:12:407:-20.3995,0,-111.08 0/1:35:31,4:31:1070:4:135:-1.9474,0,-86.0743 dDocent_Contig_1069 98 . N C 253.32 . AB=0;ABP=0;AC=4;AF=1;AN=4;AO=11;CIGAR=1X;DP=11;DPB=11;DPRA=0;EPP=26.8965;EPPR=0;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=0;NS=2;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=273;QR=0;RO=0;RPL=11;RPP=26.8965;RPPR=0;RPR=0;RUN=1;SAF=11;SAP=26.8965;SAR=0;SRF=0;SRP=0;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 1/1:7:0,7:0:0:7:202:-18.464,-2.10721,0 ./.:.:.:.:.:.:.:. 1/1:4:0,4:0:0:4:71:-6.56683,-1.20412,0 dDocent_Contig_1070 57 . T C 9629.08 . AB=0.867769;ABP=145.161;AC=4;AF=0.666667;AN=6;AO=293;CIGAR=1X;DP=320;DPB=320;DPRA=0;EPP=639.252;EPPR=59.4686;GTI=0;LEN=1;MEANALT=1.33333;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=11546;QR=1038;RO=26;RPL=293;RPP=639.252;RPPR=59.4686;RPR=0;RUN=1;SAF=293;SAP=639.252;SAR=0;SRF=26;SRP=59.4686;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 1/1:199:10,188:10:400:188:7487:-637.129,-23.3662,0 0/1:40:4,36:4:160:36:1394:-113.679,0,-2.74223 0/1:81:12,69:12:478:69:2665:-215.598,0,-18.9874 dDocent_Contig_1071 98 . N C 202.602 . AB=0;ABP=0;AC=4;AF=1;AN=4;AO=7;CIGAR=1X;DP=7;DPB=7;DPRA=0;EPP=18.2106;EPPR=0;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=0;NS=2;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=215;QR=0;RO=0;RPL=7;RPP=18.2106;RPPR=0;RPR=0;RUN=1;SAF=7;SAP=18.2106;SAR=0;SRF=0;SRP=0;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 1/1:3:0,3:0:0:3:92:-8.58485,-0.90309,0 ./.:.:.:.:.:.:.:. 1/1:4:0,4:0:0:4:123:-11.3739,-1.20412,0 dDocent_Contig_1072 7 . T A 10316.2 . AB=0.868526;ABP=299.101;AC=4;AF=0.666667;AN=6;AO=331;CIGAR=1X;DP=373;DPB=373;DPRA=0;EPP=721.768;EPPR=92.0407;GTI=0;LEN=1;MEANALT=1.33333;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=1.38778e-17;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=12643;QR=1576;RO=41;RPL=0;RPP=721.768;RPPR=92.0407;RPR=331;RUN=1;SAF=331;SAP=721.768;SAR=0;SRF=41;SRP=92.0407;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:187:27,160:27:1043:160:6118:-494.263,0,-37.8849 0/1:64:6,58:6:225:58:2173:-176.535,0,-1.34504 1/1:122:8,113:8:308:113:4352:-363.658,-8.71371,0 dDocent_Contig_1073 12 . G A 396.296 . AB=0.216495;ABP=70.7289;AC=3;AF=0.5;AN=6;AO=21;CIGAR=1X;DP=97;DPB=97;DPRA=0;EPP=48.6112;EPPR=165.871;GTI=0;LEN=1;MEANALT=1.33333;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=813;QR=2988;RO=75;RPL=0;RPP=48.6112;RPPR=165.871;RPR=21;RUN=1;SAF=21;SAP=48.6112;SAR=0;SRF=75;SRP=165.871;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:52:40,11:40:1590:11:439:-24.3054,0,-127.788 0/1:35:28,7:28:1121:7:252:-12.4848,0,-90.6388 0/1:10:7,3:7:277:3:122:-8.36219,0,-22.2878 dDocent_Contig_1075 54 . A C 121.537 . AB=0.125;ABP=120.27;AC=2;AF=0.333333;AN=6;AO=13;CIGAR=1X;DP=128;DPB=128;DPRA=0;EPP=31.2394;EPPR=252.73;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=6.93889e-18;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=521;QR=4563;RO=115;RPL=13;RPP=31.2394;RPPR=252.73;RPR=0;RUN=1;SAF=13;SAP=31.2394;SAR=0;SRF=115;SRP=252.73;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:64:55,9:55:2177:9:361:-13.588,0,-176.841 0/0:32:31,1:31:1245:1:37:0,-5.93513,-108.624 0/1:32:29,3:29:1141:3:123:-1.83183,0,-93.3382 dDocent_Contig_1076 47 . C T 2209.83 . AB=0.111111;ABP=26.6552;AC=0;AF=0;AN=6;AO=2;CIGAR=1M2I13M1X;DP=209;DPB=209.6;DPRA=0;EPP=7.35324;EPPR=178.9;GTI=0;LEN=1;MEANALT=5;MQM=60;MQMR=60;NS=3;NUMALT=4;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=69;QR=3172;RO=81;RPL=0;RPP=7.35324;RPPR=178.9;RPR=2;RUN=1;SAF=2;SAP=7.35324;SAR=0;SRF=81;SRP=178.9;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|0:144:58,0,54,14,11:58:2283:0,54,14,11:0,2098,555,433:-154.914,-172.373,-360.18,0,-187.81,-171.554,-126.689,-314.497,-142.126,-310.283,-136.753,-324.561,-152.191,-278.878,-321.25 0|0:18:1,2,11,1,2:1:38:2,11,1,2:69,440,37,73:-38.8368,-33.5362,-36.0506,-2.85008,-0.365492,-2.66191,-36.1112,-33.6264,-2.94123,-38.9268,-33.176,-30.6916,0,-33.2662,-35.6906 0|0:47:22,0,12,9,2:22:851:0,12,9,2:0,477,335,81:-32.67,-39.2927,-109.191,0,-69.9139,-66.3015,-11.8755,-81.7748,-42.4961,-79.0656,-32.6109,-102.511,-63.2329,-75.0944,-101.909 dDocent_Contig_1077 10 . T C 769.696 . AB=0.215569;ABP=120.361;AC=3;AF=0.5;AN=6;AO=36;CIGAR=1X1M;DP=167;DPB=167;DPRA=0;EPP=81.1833;EPPR=280.959;GTI=0;LEN=1;MEANALT=1.66667;MQM=59.4444;MQMR=60;NS=3;NUMALT=2;ODDS=0;PAIRED=0.666667;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=1462;QR=5095;RO=128;RPL=0;RPP=81.1833;RPPR=280.959;RPR=36;RUN=1;SAF=36;SAP=81.1833;SAR=0;SRF=128;SRP=280.959;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|1:98:86,0,11:86:3435:0,11:0,448:-11.034,-36.9225,-319.825,0,-282.899,-279.588 0|1:36:18,2,16:18:696:2,16:56,650:-48.2687,-49.2639,-105.809,0,-52.8269,-52.437 0|1:33:24,0,9:24:964:0,9:0,364:-23.1899,-30.4146,-109.846,0,-79.8346,-77.1253 dDocent_Contig_1078 15 . C A 1806.84 . AB=0.156028;ABP=147.914;AC=1;AF=0.166667;AN=6;AO=22;CIGAR=1X2M1X3M1X1M2X;DP=141;DPB=141;DPRA=0;EPP=50.7827;EPPR=113.755;GTI=0;LEN=1;MEANALT=2.66667;MQM=60;MQMR=60;NS=3;NUMALT=2;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=854;QR=1980;RO=51;RPL=0;RPP=50.7827;RPPR=113.755;RPR=22;RUN=1;SAF=22;SAP=50.7827;SAR=0;SRF=51;SRP=113.755;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|0:61:29,10,21:29:1133:10,21:382,780:-55.0869,-32.4737,-122.619,0,-61.8122,-86.8286 1|0:28:4,5,18:4:156:5,18:194,650:-54.9347,-40.1939,-51.5165,-3.11602,0,-10.5228 0|0:52:18,7,27:18:691:7,27:278,998:-76.1854,-58.7111,-113.326,0,-33.8165,-48.5796 dDocent_Contig_1079 62 . G A 45.9029 . AB=0.116667;ABP=79.5909;AC=2;AF=0.333333;AN=6;AO=7;CIGAR=1X;DP=74;DPB=74;DPRA=2.14286;EPP=18.2106;EPPR=148.499;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=3.46945e-18;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=282;QR=2634;RO=67;RPL=7;RPP=18.2106;RPPR=148.499;RPR=0;RUN=1;SAF=7;SAP=18.2106;SAR=0;SRF=67;SRP=148.499;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:44:39,5:39:1522:5:201:-5.22469,0,-123.978 0/0:14:14,0:14:543:0:0:0,-4.21442,-49.2068 0/1:16:14,2:14:569:2:81:-2.86925,0,-46.736 dDocent_Contig_1080 174 . A G 30.9418 . AB=0.106061;ABP=91.9749;AC=2;AF=0.333333;AN=6;AO=9;CIGAR=1X;DP=126;DPB=126;DPRA=0;EPP=22.5536;EPPR=254.901;GTI=0;LEN=1;MEANALT=1.33333;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=354;QR=4570;RO=116;RPL=9;RPP=22.5536;RPPR=254.901;RPR=0;RUN=1;SAF=0;SAP=22.5536;SAR=9;SRF=0;SRP=254.901;SRR=116;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:60:57,2:57:2255:2:82:0,-10.3905,-195.344 0/1:24:22,2:22:866:2:81:-0.461014,0,-71.025 0/1:42:37,5:37:1449:5:191:-4.91357,0,-118.021 dDocent_Contig_1081 29 . A G 1417.92 . AB=0.0566038;ABP=184.021;AC=0;AF=0;AN=6;AO=6;CIGAR=1X2M1X2M1X;DP=209;DPB=209;DPRA=0;EPP=16.0391;EPPR=313.531;GTI=0;LEN=1;MEANALT=3;MQM=60;MQMR=60;NS=3;NUMALT=2;ODDS=0;PAIRED=1;PAIREDR=0.958042;PAO=0;PQA=0;PQR=0;PRO=0;QA=234;QR=5546;RO=143;RPL=0;RPP=16.0391;RPPR=313.531;RPR=6;RUN=1;SAF=6;SAP=16.0391;SAR=0;SRF=143;SRP=313.531;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|0:106:63,6,36:63:2451:6,36:234,1418:-97.7018,-97.4323,-297.043,0,-182.191,-190.588 0|0:47:37,0,10:37:1410:0,10:0,382:-20.5846,-31.7227,-147.379,0,-116.038,-113.027 0|0:56:43,0,13:43:1685:0,13:0,506:-29.0282,-41.9725,-180.536,0,-138.953,-135.04 dDocent_Contig_1082 29 . T C 5992.11 . AB=0.898305;ABP=84.3117;AC=5;AF=0.833333;AN=6;AO=179;CIGAR=1X;DP=192;DPB=192;DPRA=0;EPP=391.704;EPPR=31.2394;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=7160;QR=524;RO=13;RPL=0;RPP=391.704;RPPR=31.2394;RPR=179;RUN=1;SAF=179;SAP=391.704;SAR=0;SRF=13;SRP=31.2394;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 1/1:77:6,71:6:243:71:2823:-231.924,-0.931341,0 1/1:56:1,55:1:41:55:2204:-194.432,-12.7631,0 0/1:59:6,53:6:240:53:2133:-174.376,0,-4.21468 dDocent_Contig_1083 13 . T C 911.02 . AB=0.204545;ABP=169.819;AC=2;AF=0.333333;AN=6;AO=45;CIGAR=1X;DP=240;DPB=240;DPRA=5.5;EPP=100.727;EPPR=426.447;GTI=0;LEN=1;MEANALT=1;MQM=59.0444;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=0.00512821;PAO=0;PQA=0;PQR=0;PRO=0;QA=1781;QR=7849;RO=195;RPL=0;RPP=100.727;RPPR=426.447;RPR=45;RUN=1;SAF=45;SAP=100.727;SAR=0;SRF=195;SRP=426.447;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:165:143,22:143:5758:22:876:-29.4547,0,-468.329 0/0:20:20,0:20:800:0:0:0,-6.0206,-72.3186 0/1:55:32,23:32:1291:23:905:-65.1702,0,-99.8966 dDocent_Contig_1084 61 . A G 154.543 . AB=0.219512;ABP=31.0276;AC=1;AF=0.166667;AN=6;AO=10;CIGAR=1X;DP=116;DPB=116;DPRA=0.66;EPP=24.725;EPPR=233.186;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=329;QR=3937;RO=106;RPL=10;RPP=24.725;RPPR=233.186;RPR=0;RUN=1;SAF=10;SAP=24.725;SAR=0;SRF=106;SRP=233.186;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:41:32,9:32:1174:9:322:-16.9771,0,-93.6123 0/0:25:24,1:24:871:1:7:0,-6.82575,-77.9849 0/0:50:50,0:50:1892:0:0:0,-15.0515,-170.53 dDocent_Contig_1085 91 . A G 170.446 . AB=0.181818;ABP=41.702;AC=4;AF=0.666667;AN=6;AO=10;CIGAR=1X;DP=46;DPB=46;DPRA=0;EPP=24.725;EPPR=81.1833;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=0.9;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=351;QR=1249;RO=36;RPL=10;RPP=24.725;RPPR=81.1833;RPR=0;RUN=1;SAF=10;SAP=24.725;SAR=0;SRF=36;SRP=81.1833;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:35:28,7:28:971:7:255:-12.7643,0,-77.1637 1/1:2:0,2:0:0:2:61:-5.79402,-0.60206,0 0/1:9:8,1:8:278:1:35:-0.789359,0,-22.6487 dDocent_Contig_1086 21 . C T 3800.69 . AB=0.540426;ABP=6.34605;AC=3;AF=0.5;AN=6;AO=127;CIGAR=1X;DP=235;DPB=235;DPRA=0;EPP=278.787;EPPR=237.529;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=5063;QR=4353;RO=108;RPL=0;RPP=278.787;RPPR=237.529;RPR=127;RUN=1;SAF=127;SAP=278.787;SAR=0;SRF=108;SRP=237.529;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:127:79,48:79:3174:48:1918:-134.582,0,-247.489 0/1:42:11,31:11:450:31:1247:-99.8563,0,-28.2125 0/1:66:18,48:18:729:48:1898:-151.153,0,-46.0657 dDocent_Contig_1087 10 . T A 1411.86 . AB=0.214286;ABP=221.398;AC=3;AF=0.5;AN=6;AO=66;CIGAR=1X;DP=308;DPB=308;DPRA=0;EPP=146.327;EPPR=528.507;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=1.38778e-17;PAIRED=1;PAIREDR=0.991736;PAO=0;PQA=0;PQR=0;PRO=0;QA=2650;QR=9765;RO=242;RPL=0;RPP=146.327;RPPR=528.507;RPR=66;RUN=1;SAF=66;SAP=146.327;SAR=0;SRF=242;SRP=528.507;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:155:123,32:123:4944:32:1281:-68.899,0,-398.17 0/1:80:55,25:55:2224:25:1008:-66.9312,0,-176.236 0/1:73:64,9:64:2597:9:361:-10.8787,0,-211.87 dDocent_Contig_1088 16 . A G 193.977 . AB=0.257143;ABP=20.9405;AC=2;AF=0.333333;AN=6;AO=9;CIGAR=1X;DP=44;DPB=44;DPRA=1.94444;EPP=22.5536;EPPR=79.0118;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=0.942857;PAO=0;PQA=0;PQR=0;PRO=0;QA=363;QR=1374;RO=35;RPL=0;RPP=22.5536;RPPR=79.0118;RPR=9;RUN=1;SAF=9;SAP=22.5536;SAR=0;SRF=35;SRP=79.0118;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:19:12,7:12:467:7:281:-19.9419,0,-36.654 0/0:9:9,0:9:358:0:0:0,-2.70927,-32.5829 0/1:16:14,2:14:549:2:82:-2.9632,0,-44.9334 dDocent_Contig_1089 22 . G A 70.4564 . AB=0.043956;ABP=167.398;AC=2;AF=0.333333;AN=6;AO=4;CIGAR=1X6M;DP=138;DPB=138;DPRA=0.968085;EPP=11.6962;EPPR=252.73;GTI=0;LEN=1;MEANALT=2.5;MQM=37.5;MQMR=58.8957;NS=3;NUMALT=3;ODDS=0;PAIRED=0;PAIREDR=0.0956522;PAO=0;PQA=0;PQR=0;PRO=0;QA=127;QR=4387;RO=115;RPL=0;RPP=11.6962;RPPR=252.73;RPR=4;RUN=1;SAF=4;SAP=11.6962;SAR=0;SRF=115;SRP=252.73;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|1:53:46,0,5,1:46:1743:0,5,1:0,199,37:-2.65081,-16.4982,-159.388,0,-143,-141.495,-13.4683,-156.361,-139.973,-156.06 0|0:47:39,3,3,0:39:1457:3,3,0:121,106,0:0,-1.70865,-120.048,-3.3601,-112.593,-121.667,-11.7402,-120.951,-122.57,-130.928 0|1:38:30,0,5,3:30:1187:0,5,3:0,204,90:-7.88648,-16.9174,-114.622,0,-97.7874,-96.2823,-10.5842,-108.247,-91.4141,-107.344 dDocent_Contig_1090 35 . G A 122.914 . AB=0.16;ABP=53.2147;AC=1;AF=0.166667;AN=6;AO=9;CIGAR=1X;DP=126;DPB=126;DPRA=0.645455;EPP=22.5536;EPPR=257.073;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=361;QR=4663;RO=117;RPL=0;RPP=22.5536;RPPR=257.073;RPR=9;RUN=1;SAF=9;SAP=22.5536;SAR=0;SRF=117;SRP=257.073;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:55:55,0:55:2203:0:0:0,-16.5566,-198.431 0/0:21:20,1:20:806:1:41:0,-2.22706,-68.7628 0/1:50:42,8:42:1654:8:320:-14.1153,0,-134.035 dDocent_Contig_1092 21 . C A 358.596 . AB=0.0860927;ABP=227.707;AC=0;AF=0;AN=6;AO=13;CIGAR=2X2M1X;DP=242;DPB=242;DPRA=0;EPP=31.2394;EPPR=385.189;GTI=0;LEN=1;MEANALT=4;MQM=57.2308;MQMR=60;NS=3;NUMALT=4;ODDS=0;PAIRED=1;PAIREDR=0.965909;PAO=0;PQA=0;PQR=0;PRO=0;QA=504;QR=6905;RO=176;RPL=0;RPP=31.2394;RPPR=385.189;RPR=13;RUN=1;SAF=13;SAP=31.2394;SAR=0;SRF=176;SRP=385.189;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|0:151:115,3,13,18,0:115:4495:3,13,18,0:118,504,713,0:-24.07,-48.9878,-417.631,-18.7371,-378.577,-384.364,0,-359.853,-329.596,-364.135,-58.6885,-418.534,-388.277,-369.553,-428.234 0|0:21:15,3,0,1,0:15:589:3,0,1,0:115,0,38,0:-4.61562,0,-47.6262,-9.13107,-48.5293,-57.6194,-6.0046,-45.4125,-54.5026,-54.2016,-9.13107,-48.5293,-57.6194,-54.5026,-57.6194 0|0:70:46,7,0,8,6:46:1821:7,0,8,6:275,0,322,223:-12.6965,-3.92433,-151.695,-26.5439,-153.802,-176.42,0,-127.262,-149.881,-147.473,-8.30464,-135.559,-158.177,-131.638,-156.371 dDocent_Contig_1095 18 . C T 1728.94 . AB=0.204433;ABP=311.081;AC=3;AF=0.5;AN=6;AO=83;CIGAR=1X;DP=406;DPB=406;DPRA=0;EPP=174.661;EPPR=704.396;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=0.987952;PAIREDR=0.972136;PAO=0;PQA=0;PQR=0;PRO=0;QA=3331;QR=12985;RO=323;RPL=0;RPP=183.243;RPPR=704.396;RPR=83;RUN=1;SAF=82;SAP=174.661;SAR=1;SRF=323;SRP=704.396;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:210:168,42:168:6726:42:1680:-88.2112,0,-541.821 0/1:54:45,9:45:1812:9:354:-15.9608,0,-147.035 0/1:142:110,32:110:4447:32:1297:-74.2449,0,-357.395 dDocent_Contig_1096 4 . T A 1099.62 . AB=0.301887;ABP=57.2152;AC=1;AF=0.166667;AN=6;AO=53;CIGAR=1X1M1D1M;DP=231;DPB=217.25;DPRA=7.2;EPP=118.098;EPPR=387.361;GTI=0;LEN=1;MEANALT=1.5;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=1953;QR=6703;RO=177;RPL=0;RPP=118.098;RPPR=387.361;RPR=53;RUN=1;SAF=53;SAP=118.098;SAR=0;SRF=177;SRP=387.361;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|1:159:110,48:110:4164:48:1768:-111.484,0,-326.962 0|0:15:15,0:15:570:0:0:0,-4.51545,-51.6429 0|0:57:52,5:52:1969:5:185:0,-0.148695,-160.454 dDocent_Contig_1098 98 . N C 198.008 . AB=0;ABP=0;AC=4;AF=1;AN=4;AO=6;CIGAR=1X;DP=6;DPB=6;DPRA=0;EPP=16.0391;EPPR=0;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=0;NS=2;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=209;QR=0;RO=0;RPL=6;RPP=16.0391;RPPR=0;RPR=0;RUN=1;SAF=6;SAP=16.0391;SAR=0;SRF=0;SRP=0;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 1/1:3:0,3:0:0:3:105:-9.79616,-0.90309,0 ./.:.:.:.:.:.:.:. 1/1:3:0,3:0:0:3:104:-9.70309,-0.90309,0 dDocent_Contig_1100 61 . G A 535.932 . AB=0.444444;ABP=4.21667;AC=3;AF=0.5;AN=6;AO=20;CIGAR=1X;DP=45;DPB=45;DPRA=0;EPP=46.4397;EPPR=57.2971;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=795;QR=970;RO=25;RPL=20;RPP=46.4397;RPPR=57.2971;RPR=0;RUN=1;SAF=20;SAP=46.4397;SAR=0;SRF=25;SRP=57.2971;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:23:12,11:12:475:11:440:-33.0325,0,-36.1787 0/1:9:5,4:5:192:4:158:-11.891,0,-14.938 0/1:13:8,5:8:303:5:197:-14.1926,0,-23.7111 dDocent_Contig_1101 7 . T C 15751.6 . AB=0.154272;ABP=1692.17;AC=1;AF=0.166667;AN=6;AO=251;CIGAR=3X1M1X1M1X;DP=1627;DPB=1627;DPRA=0;EPP=548.05;EPPR=875.964;GTI=0;LEN=1;MEANALT=32.6667;MQM=60;MQMR=60;NS=3;NUMALT=3;ODDS=4.44089e-16;PAIRED=0.0956175;PAIREDR=0.665025;PAO=0;PQA=0;PQR=0;PRO=0;QA=9738;QR=15850;RO=406;RPL=0;RPP=548.05;RPPR=884.628;RPR=251;RUN=1;SAF=251;SAP=548.05;SAR=0;SRF=405;SRP=875.964;SRR=1;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|0:762:221,11,101,265:221:8590:11,101,265:403,3913,10115:-758.975,-799.068,-1501.62,-504.049,-1183.48,-1179.51,0,-679.433,-384.415,-626.095 1|0:282:39,23,50,82:39:1531:23,50,82:887,1932,3093:-272.696,-213.45,-332.448,-125.755,-180.69,-236.626,-32.7586,-87.6942,0,-133.996 0|0:583:146,23,100,188:146:5729:23,100,188:886,3893,7235:-549.016,-523.092,-987.335,-273.015,-674.308,-714.08,0,-401.294,-151.217,-414.575 dDocent_Contig_1102 87 . A G 3755.83 . AB=0.854015;ABP=152.144;AC=4;AF=0.666667;AN=6;AO=131;CIGAR=1X;DP=151;DPB=151;DPRA=0;EPP=287.473;EPPR=46.4397;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=0.992366;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=4661;QR=742;RO=20;RPL=131;RPP=287.473;RPPR=46.4397;RPR=0;RUN=1;SAF=131;SAP=287.473;SAR=0;SRF=20;SRP=46.4397;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:91:10,81:10:379:81:2871:-231.217,0,-7.06973 1/1:14:0,14:0:0:14:511:-46.3275,-4.21442,0 0/1:46:10,36:10:363:36:1279:-101.562,0,-19.1678 dDocent_Contig_1103 98 . N G 277.14 . AB=0;ABP=0;AC=6;AF=1;AN=6;AO=9;CIGAR=1X;DP=9;DPB=9;DPRA=0;EPP=22.5536;EPPR=0;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=0;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=292;QR=0;RO=0;RPL=9;RPP=22.5536;RPPR=0;RPR=0;RUN=1;SAF=9;SAP=22.5536;SAR=0;SRF=0;SRP=0;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 1/1:4:0,4:0:0:4:133:-12.299,-1.20412,0 1/1:1:0,1:0:0:1:31:-3.09945,-0.30103,0 1/1:4:0,4:0:0:4:128:-11.8374,-1.20412,0 dDocent_Contig_1104 13 . A T 1389.4 . AB=0.123596;ABP=112.535;AC=1;AF=0.166667;AN=6;AO=11;CIGAR=2X2M1X1M3X;DP=89;DPB=89;DPRA=0;EPP=26.8965;EPPR=68.1545;GTI=0;LEN=1;MEANALT=2.33333;MQM=60;MQMR=60;NS=3;NUMALT=2;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=431;QR=1174;RO=30;RPL=0;RPP=26.8965;RPPR=68.1545;RPR=11;RUN=1;SAF=11;SAP=26.8965;SAR=0;SRF=30;SRP=68.1545;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|0:45:22,4,18:22:867:4,18:155,669:-48.11,-41.9967,-112.134,0,-58.6027,-65.9167 1|0:17:2,6,9:2:73:6,9:236,317:-38.651,-19.8239,-23.9833,-13.4778,0,-16.7247 0|0:27:6,1,20:6:234:1,20:40,729:-57.7016,-56.211,-75.1485,0,-15.9276,-13.2035 dDocent_Contig_1105 45 . G A 125.232 . AB=0.357143;ABP=5.49198;AC=1;AF=0.166667;AN=6;AO=5;CIGAR=1X;DP=97;DPB=97;DPRA=0.337349;EPP=13.8677;EPPR=202.786;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=202;QR=3612;RO=92;RPL=0;RPP=13.8677;RPPR=202.786;RPR=5;RUN=1;SAF=5;SAP=13.8677;SAR=0;SRF=92;SRP=202.786;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:69:69,0:69:2719:0:0:0,-20.7711,-244.839 0/0:14:14,0:14:541:0:0:0,-4.21442,-49.026 0/1:14:9,5:9:352:5:202:-14.3471,0,-27.8248 dDocent_Contig_1106 57 . A T 85334.7 . AB=0;ABP=0;AC=6;AF=1;AN=6;AO=2434;CIGAR=1X;DP=2448;DPB=2448;DPRA=0;EPP=5288.37;EPPR=29.068;GTI=0;LEN=1;MEANALT=1.66667;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=0.999589;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=95380;QR=472;RO=12;RPL=2434;RPP=5288.37;RPPR=29.068;RPR=0;RUN=1;SAF=2434;SAP=5288.37;SAR=0;SRF=12;SRP=29.068;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 1/1:1537:1,1535:1:41:1535:60869:-5468.36,-458.697,0 1/1:250:5,245:5:198:245:9618:-846.894,-57.061,0 1/1:661:6,654:6:233:654:24893:-2217.61,-177.729,0 dDocent_Contig_1107 47 . T G 729.956 . AB=0.161972;ABP=284.874;AC=3;AF=0.5;AN=6;AO=46;CIGAR=1X;DP=284;DPB=284;DPRA=0;EPP=102.898;EPPR=491.921;GTI=0;LEN=1;MEANALT=1.33333;MQM=60;MQMR=59.9451;NS=3;NUMALT=1;ODDS=1.38778e-17;PAIRED=1;PAIREDR=0.987342;PAO=0;PQA=0;PQR=0;PRO=0;QA=1809;QR=9523;RO=237;RPL=0;RPP=102.898;RPPR=491.921;RPR=46;RUN=1;SAF=46;SAP=102.898;SAR=0;SRF=237;SRP=517.649;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:162:141,21:141:5653:21:813:-24.7121,0,-459.707 0/1:47:41,6:41:1664:6:239:-7.73639,0,-135.83 0/1:75:55,19:55:2206:19:757:-46.07,0,-176.334 dDocent_Contig_1108 27 . C A 4285.46 . AB=0.855346;ABP=177.397;AC=3;AF=0.5;AN=6;AO=136;CIGAR=1X3M1X;DP=159;DPB=159.2;DPRA=0;EPP=298.331;EPPR=48.6112;GTI=0;LEN=1;MEANALT=1.33333;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=37;PRO=1;QA=5348;QR=828;RO=21;RPL=0;RPP=298.331;RPPR=48.6112;RPR=136;RUN=1;SAF=136;SAP=298.331;SAR=0;SRF=21;SRP=48.6112;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|1:71:8,61:8:313:61:2384:-193.568,0,-7.36887 0|1:41:4,37:4:161:37:1477:-120.474,0,-2.15771 0|1:47:9,38:9:354:38:1487:-119.937,0,-18.0729 dDocent_Contig_1109 25 . T C 7237.76 . AB=0.745455;ABP=31.7922;AC=5;AF=0.833333;AN=6;AO=220;CIGAR=1X;DP=248;DPB=248;DPRA=0;EPP=480.734;EPPR=63.8115;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=8791;QR=1076;RO=28;RPL=0;RPP=480.734;RPPR=63.8115;RPR=220;RUN=1;SAF=220;SAP=480.734;SAR=0;SRF=28;SRP=63.8115;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 1/1:158:12,146:12:464:146:5803:-479.953,-5.45576,0 1/1:35:2,33:2:79:33:1335:-112.911,-3.03842,0 0/1:55:14,41:14:533:41:1653:-132.436,0,-31.7538 dDocent_Contig_1110 9 . T C 335.571 . AB=0.161074;ABP=151.676;AC=3;AF=0.5;AN=6;AO=24;CIGAR=1X;DP=149;DPB=149;DPRA=0;EPP=55.1256;EPPR=274.444;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=0;PAIREDR=0.952;PAO=0;PQA=0;PQR=0;PRO=0;QA=920;QR=4808;RO=125;RPL=0;RPP=55.1256;RPPR=274.444;RPR=24;RUN=1;SAF=24;SAP=55.1256;SAR=0;SRF=125;SRP=274.444;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:67:53,14:53:2039:14:531:-27.9615,0,-163.575 0/1:54:47,7:47:1807:7:272:-8.59161,0,-146.627 0/1:28:25,3:25:962:3:117:-2.48154,0,-78.4644 dDocent_Contig_1111 11 . C T 138.562 . AB=0.132231;ABP=145.161;AC=3;AF=0.5;AN=6;AO=16;CIGAR=1X4M;DP=121;DPB=121;DPRA=0;EPP=29.6108;EPPR=220.158;GTI=0;LEN=1;MEANALT=1.66667;MQM=46.4375;MQMR=53.58;NS=3;NUMALT=2;ODDS=0;PAIRED=0;PAIREDR=0.58;PAO=0;PQA=0;PQR=0;PRO=0;QA=613;QR=3935;RO=100;RPL=0;RPP=37.7539;RPPR=220.158;RPR=16;RUN=1;SAF=15;SAP=29.6108;SAR=1;SRF=100;SRP=220.158;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|1:46:38,0,8:38:1522:0,8:0,294:-11.9185,-23.3577,-148.272,0,-125.275,-122.867 0|1:49:39,4,5:39:1493:4,5:139,197:-3.9395,-8.66467,-121.903,0,-107.502,-113.05 0|1:26:23,0,3:23:920:0,3:0,122:-3.51498,-10.4387,-80.5524,0,-70.515,-69.6119 dDocent_Contig_1112 98 . N T 61.7453 . AB=0;ABP=0;AC=2;AF=1;AN=2;AO=2;CIGAR=2X;DP=2;DPB=2.5;DPRA=0;EPP=7.35324;EPPR=0;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=0;NS=1;NUMALT=1;ODDS=5.99146;PAIRED=1;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=65;QR=0;RO=0;RPL=2;RPP=7.35324;RPPR=0;RPR=0;RUN=1;SAF=2;SAP=7.35324;SAR=0;SRF=0;SRP=0;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL .:.:.:.:.:.:.:. .:.:.:.:.:.:.:. 1|1:2:0,2:0:0:2:65:-6.17345,-0.60206,0 dDocent_Contig_1114 65 . G A 1633.31 . AB=0.30531;ABP=77.4169;AC=3;AF=0.5;AN=6;AO=69;CIGAR=1X;DP=226;DPB=226;DPRA=0;EPP=152.842;EPPR=343.931;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=1.38778e-17;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=2622;QR=6000;RO=157;RPL=69;RPP=152.842;RPPR=343.931;RPR=0;RUN=1;SAF=69;SAP=152.842;SAR=0;SRF=157;SRP=343.931;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:104:73,31:73:2816:31:1215:-78.3149,0,-222.254 0/1:53:42,11:42:1615:11:398:-20.1978,0,-129.639 0/1:69:42,27:42:1569:27:1009:-70.3413,0,-120.699 dDocent_Contig_1116 8 . T C 1431.68 . AB=0.247126;ABP=99.6533;AC=2;AF=0.333333;AN=6;AO=43;CIGAR=1X1M1X3M1X1M1X3M1X3M1X;DP=174;DPB=174;DPRA=0;EPP=96.3836;EPPR=174.557;GTI=0;LEN=1;MEANALT=4;MQM=60;MQMR=60;NS=3;NUMALT=4;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=1646;QR=3076;RO=79;RPL=0;RPP=96.3836;RPPR=174.557;RPR=43;RUN=1;SAF=43;SAP=96.3836;SAR=0;SRF=79;SRP=174.557;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|0:109:61,15,0,26,1:61:2384:15,0,26,1:580,0,1033,40:-66.6869,-37.4123,-228.892,-85.0498,-233.408,-281.046,0,-148.363,-196.002,-188.175,-81.7545,-230.112,-277.751,-192.707,-277.45 0|1:26:7,13,0,3,2:7:265:13,0,3,2:488,0,123,79:-37.8565,0,-17.8033,-39.9637,-21.7167,-61.6876,-29.8061,-11.5571,-51.5315,-50.6284,-33.4611,-15.214,-55.1854,-45.0288,-54.5834 0|1:39:11,15,6,0,7:11:427:15,6,0,7:578,229,0,279:-44.1471,0,-30.5675,-28.6741,-16.2996,-61.9516,-47.4584,-35.0829,-63.7577,-82.5425,-24.4793,-12.1036,-40.7796,-59.5647,-57.4574 dDocent_Contig_1117 58 . C A 740.021 . AB=0.235714;ABP=87.9459;AC=3;AF=0.5;AN=6;AO=33;CIGAR=1X;DP=140;DPB=140;DPRA=0;EPP=74.6689;EPPR=235.358;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=6.93889e-18;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=1340;QR=4274;RO=107;RPL=33;RPP=74.6689;RPPR=235.358;RPR=0;RUN=1;SAF=33;SAP=74.6689;SAR=0;SRF=107;SRP=235.358;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:54:39,15:39:1564:15:604:-38.4429,0,-124.743 0/1:53:45,8:45:1796:8:327:-13.8455,0,-145.9 0/1:33:23,10:23:914:10:409:-27.2366,0,-72.6292 dDocent_Contig_1118 10 . T C 2898.82 . AB=0.764706;ABP=75.4353;AC=3;AF=0.5;AN=6;AO=91;CIGAR=1X;DP=119;DPB=119;DPRA=0;EPP=200.614;EPPR=63.8115;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=0.978022;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=3663;QR=1116;RO=28;RPL=0;RPP=200.614;RPPR=63.8115;RPR=91;RUN=1;SAF=91;SAP=200.614;SAR=0;SRF=28;SRP=63.8115;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:72:19,53:19:754:53:2134:-170.557,0,-46.5033 0/1:9:1,8:1:40:8:327:-27.0908,0,-1.28641 0/1:38:8,30:8:322:30:1202:-97.0163,0,-17.9086 dDocent_Contig_1119 58 . C A 2472.54 . AB=0.265882;ABP=205.346;AC=3;AF=0.5;AN=6;AO=113;CIGAR=1X;DP=425;DPB=425;DPRA=0;EPP=248.387;EPPR=680.51;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=4221;QR=11765;RO=312;RPL=113;RPP=248.387;RPPR=680.51;RPR=0;RUN=1;SAF=113;SAP=248.387;SAR=0;SRF=312;SRP=680.51;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:248:178,70:178:6803:70:2669:-165.741,0,-537.471 0/1:79:56,23:56:2124:23:843:-52.4055,0,-167.601 0/1:98:78,20:78:2838:20:709:-34.6307,0,-226.14 dDocent_Contig_1120 90 . G C 91.3582 . AB=0.166667;ABP=49.335;AC=1;AF=0.166667;AN=6;AO=8;CIGAR=1X;DP=132;DPB=132;DPRA=1.14286;EPP=20.3821;EPPR=270.101;GTI=0;LEN=1;MEANALT=2;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=3.46945e-18;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=279;QR=4186;RO=123;RPL=8;RPP=20.3821;RPPR=270.101;RPR=0;RUN=1;SAF=8;SAP=20.3821;SAR=0;SRF=123;SRP=270.101;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:52:52,0:52:1775:0:0:0,-15.6536,-160.034 0/0:32:32,0:32:1076:0:0:0,-9.63296,-97.1409 0/1:48:39,8:39:1335:8:279:-10.9597,0,-105.96 dDocent_Contig_1121 10 . C T 47.3211 . AB=0.1875;ABP=16.582;AC=1;AF=0.166667;AN=6;AO=3;CIGAR=1X;DP=50;DPB=50;DPRA=0.941176;EPP=9.52472;EPPR=105.07;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=0.978723;PAO=0;PQA=0;PQR=0;PRO=0;QA=122;QR=1891;RO=47;RPL=0;RPP=9.52472;RPPR=105.07;RPR=3;RUN=1;SAF=3;SAP=9.52472;SAR=0;SRF=47;SRP=105.07;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:24:24,0:24:974:0:0:0,-7.22472,-87.958 0/0:10:10,0:10:399:0:0:0,-3.0103,-36.2665 0/1:16:13,3:13:518:3:122:-6.55601,0,-42.1477 dDocent_Contig_1122 21 . A T 6863.53 . AB=0.170088;ABP=325.388;AC=1;AF=0.166667;AN=6;AO=58;CIGAR=1X2M1X;DP=341;DPB=341;DPRA=0;EPP=128.956;EPPR=170.214;GTI=0;LEN=1;MEANALT=2.33333;MQM=60;MQMR=60;NS=3;NUMALT=2;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=2322;QR=3083;RO=77;RPL=0;RPP=128.956;RPPR=170.214;RPR=58;RUN=1;SAF=58;SAP=128.956;SAR=0;SRF=77;SRP=170.214;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|0:222:56,29,136:56:2247:29,136:1161,5468:-433.743,-354.958,-531.371,0,-89.5054,-144.209 0|0:37:11,7,19:11:436:7,19:283,771:-60.274,-40.2532,-74.0302,0,-12.5472,-30.1632 1|0:82:10,22,50:10:400:22,50:878,1964:-197.859,-128.555,-154.884,-39.3607,0,-57.2595 dDocent_Contig_1123 183 . C A 39.4534 . AB=0.166667;ABP=20.3821;AC=1;AF=0.166667;AN=6;AO=3;CIGAR=1M1I2M1X;DP=54;DPB=54.75;DPRA=1;EPP=9.52472;EPPR=113.755;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=120;QR=1962;RO=51;RPL=3;RPP=9.52472;RPPR=113.755;RPR=0;RUN=1;SAF=0;SAP=9.52472;SAR=3;SRF=0;SRP=113.755;SRR=51;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|0:31:31,0:31:1214:0:0:0,-9.33193,-109.544 0|1:18:15,3:15:553:3:120:-5.76915,0,-44.6781 0|0:5:5,0:5:195:0:0:0,-1.50515,-17.9239 dDocent_Contig_1124 17 . A G 332.346 . AB=0.382353;ABP=7.09778;AC=2;AF=0.333333;AN=6;AO=13;CIGAR=1X;DP=50;DPB=50;DPRA=1.0625;EPP=31.2394;EPPR=83.3548;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=514;QR=1472;RO=37;RPL=0;RPP=31.2394;RPPR=83.3548;RPR=13;RUN=1;SAF=13;SAP=31.2394;SAR=0;SRF=37;SRP=83.3548;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:19:9,10:9:366:10:398:-30.4574,0,-27.5856 0/1:15:12,3:12:483:3:116:-6.30006,0,-39.3061 0/0:16:16,0:16:623:0:0:0,-4.81648,-56.3951 dDocent_Contig_1131 11 . A G 19988.8 . AB=0.612817;ABP=85.8133;AC=3;AF=0.5;AN=6;AO=459;CIGAR=1M2I3M1X2M1X;DP=749;DPB=924.125;DPRA=0;EPP=999.716;EPPR=118.098;GTI=0;LEN=1;MEANALT=2.66667;MQM=60;MQMR=60;NS=3;NUMALT=2;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=17682;QR=2047;RO=53;RPL=0;RPP=999.716;RPPR=118.098;RPR=459;RUN=1;SAF=459;SAP=999.716;SAR=0;SRF=53;SRP=118.098;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 1|0:445:41,268,136:41:1583:268,136:10331,5246:-1136.81,-300.802,-350.137,-718.337,0,-807.407 1|0:109:9,73,24:9:347:73,24:2805,919:-274.488,-46.9237,-53.4448,-201.777,0,-223.048 1|0:195:3,118,73:3:117:118,73:4546,2806:-593.111,-220.734,-194.83,-363.655,0,-351.297 dDocent_Contig_1132 79 . G A 81.0735 . AB=0.166667;ABP=49.335;AC=2;AF=0.333333;AN=6;AO=8;CIGAR=1X;DP=72;DPB=72;DPRA=1;EPP=20.3821;EPPR=141.985;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=282;QR=2329;RO=64;RPL=8;RPP=20.3821;RPPR=141.985;RPR=0;RUN=1;SAF=8;SAP=20.3821;SAR=0;SRF=64;SRP=141.985;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:35:30,5:30:1080:5:170:-5.097,0,-86.9732 0/1:13:10,3:10:381:3:112:-6.5331,0,-30.7314 0/0:24:24,0:24:868:0:0:0,-7.22472,-78.4392 dDocent_Contig_1133 52 . C T 6287.04 . AB=0.755556;ABP=156.171;AC=3;AF=0.5;AN=6;AO=204;CIGAR=1X;DP=270;DPB=270;DPRA=0;EPP=445.991;EPPR=144.156;GTI=0;LEN=1;MEANALT=1.33333;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=7947;QR=2598;RO=65;RPL=204;RPP=445.991;RPPR=144.156;RPR=0;RUN=1;SAF=204;SAP=445.991;SAR=0;SRF=65;SRP=144.156;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:150:38,111:38:1534:111:4368:-347.821,0,-93.0415 0/1:49:6,43:6:245:43:1647:-133.69,0,-7.679 0/1:71:21,50:21:819:50:1932:-152.716,0,-52.6465 dDocent_Contig_1134 70 . T C 442.105 . AB=0.209524;ABP=79.9631;AC=1;AF=0.166667;AN=6;AO=28;CIGAR=1X;DP=201;DPB=201;DPRA=3.36538;EPP=63.8115;EPPR=378.675;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=1068;QR=6624;RO=173;RPL=28;RPP=63.8115;RPPR=378.675;RPR=0;RUN=1;SAF=28;SAP=63.8115;SAR=0;SRF=173;SRP=378.675;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:105:83,22:83:3239:22:856:-45.7334,0,-259.994 0/0:26:26,0:26:1007:0:0:0,-7.82678,-90.9303 0/0:70:64,6:64:2378:6:212:0,-1.65177,-194.806 dDocent_Contig_1135 30 . T A 73.7814 . AB=0.15625;ABP=35.8538;AC=1;AF=0.166667;AN=6;AO=5;CIGAR=1X;DP=76;DPB=76;DPRA=1.45455;EPP=13.8677;EPPR=157.185;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=205;QR=2831;RO=71;RPL=0;RPP=13.8677;RPPR=157.185;RPR=5;RUN=1;SAF=5;SAP=13.8677;SAR=0;SRF=71;SRP=157.185;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:28:28,0:28:1116:0:0:0,-8.42884,-100.719 0/1:32:27,5:27:1074:5:205:-9.20205,0,-87.3145 0/0:16:16,0:16:641:0:0:0,-4.81648,-58.0202 dDocent_Contig_1136 9 . T A 3666.17 . AB=0.547368;ABP=6.71323;AC=3;AF=0.5;AN=6;AO=104;CIGAR=2X;DP=190;DPB=190;DPRA=0;EPP=228.843;EPPR=79.0118;GTI=0;LEN=1;MEANALT=2.33333;MQM=60;MQMR=60;NS=3;NUMALT=2;ODDS=2.77556e-17;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=4044;QR=1380;RO=35;RPL=0;RPP=228.843;RPPR=79.0118;RPR=104;RUN=1;SAF=104;SAP=228.843;SAR=0;SRF=35;SRP=79.0118;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 1|0:101:18,53,29:18:714:53,29:2055,1159:-200.093,-36.6893,-79.5101,-110.045,0,-160.094 1|0:31:9,11,11:9:359:11,11:425,425:-37.3929,-5.19517,-31.4566,-5.32736,0,-31.5881 1|0:58:8,40,10:8:307:40,10:1564,408:-134.654,-8.48779,-21.635,-103.396,0,-125.583 dDocent_Contig_1137 15 . G T 208.26 . AB=0.309524;ABP=16.2459;AC=2;AF=0.333333;AN=6;AO=13;CIGAR=1X;DP=62;DPB=62;DPRA=1.05;EPP=31.2394;EPPR=109.412;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=404;QR=1958;RO=49;RPL=0;RPP=31.2394;RPPR=109.412;RPR=13;RUN=1;SAF=13;SAP=31.2394;SAR=0;SRF=49;SRP=109.412;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:30:21,9:21:829:9:265:-15.1089,0,-65.8886 0/1:12:8,4:8:325:4:139:-9.23989,0,-26.0071 0/0:20:20,0:20:804:0:0:0,-6.0206,-72.6775 dDocent_Contig_1138 30 . T C 790.504 . AB=0.0327381;ABP=640.208;AC=1;AF=0.166667;AN=6;AO=11;CIGAR=4M1X3M;DP=336;DPB=336;DPRA=0;EPP=26.8965;EPPR=456.848;GTI=0;LEN=1;MEANALT=6.66667;MQM=48;MQMR=48.8517;NS=3;NUMALT=5;ODDS=0;PAIRED=1;PAIREDR=0.861244;PAO=0;PQA=0;PQR=0;PRO=0;QA=406;QR=8206;RO=209;RPL=0;RPP=26.8965;RPPR=456.848;RPR=11;RUN=1;SAF=11;SAP=26.8965;SAR=0;SRF=209;SRP=456.848;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|0:186:123,14,9,3,24,10:123:4814:14,9,3,24,10:536,340,90,967,386:-42.6909,-39.0164,-406.061,-51.9636,-382.521,-420.517,-73.1905,-403.745,-416.696,-443.546,0,-330.571,-343.522,-364.745,-364.051,-48.0251,-378.584,-391.535,-412.759,-339.584,-416.279 0|0:77:46,1,9,7,10,3:46:1808:1,9,7,10,3:39,352,278,389,112:-18.1141,-28.9818,-157.8,-3.02116,-129.158,-129.429,-9.11394,-135.252,-109.289,-136.126,0,-126.136,-100.172,-106.267,-126.106,-22.7943,-148.932,-122.969,-129.063,-119.947,-151.009 0|1:73:40,12,9,1,7,0:40:1584:12,9,1,7,0:470,367,38,286,0:-23.7682,0,-108.259,-5.51909,-81.5845,-114.694,-32.8218,-108.884,-114.415,-144.4,-12.2013,-88.2657,-93.7969,-121.096,-121.977,-35.8094,-111.872,-117.403,-144.701,-124.084,-147.689 dDocent_Contig_1139 26 . T G 1327.59 . AB=0;ABP=0;AC=6;AF=1;AN=6;AO=37;CIGAR=1X;DP=37;DPB=37;DPRA=0;EPP=83.3548;EPPR=0;GTI=0;LEN=1;MEANALT=1;MQM=57;MQMR=0;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=1463;QR=0;RO=0;RPL=0;RPP=83.3548;RPPR=0;RPR=37;RUN=1;SAF=37;SAP=83.3548;SAR=0;SRF=0;SRP=0;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 1/1:16:0,16:0:0:16:631:-56.7477,-4.81648,0 1/1:10:0,10:0:0:10:397:-36.0682,-3.0103,0 1/1:11:0,11:0:0:11:435:-39.4658,-3.31133,0 dDocent_Contig_1142 28 . G C 3205.21 . AB=0.345029;ABP=74.3514;AC=3;AF=0.5;AN=6;AO=118;CIGAR=1X;DP=342;DPB=342;DPRA=0;EPP=259.244;EPPR=489.42;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=4759;QR=8960;RO=224;RPL=0;RPP=259.244;RPPR=489.42;RPR=118;RUN=1;SAF=118;SAP=259.244;SAR=0;SRF=224;SRP=489.42;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:170:111,59:111:4441:59:2377:-162.9,0,-348.452 0/1:75:46,29:46:1837:29:1166:-82.6327,0,-142.963 0/1:97:67,30:67:2682:30:1216:-80.5111,0,-212.295 dDocent_Contig_1143 22 . G T 1007.55 . AB=0.242938;ABP=104.603;AC=1;AF=0.166667;AN=6;AO=48;CIGAR=1X;DP=272;DPB=272;DPRA=0;EPP=107.241;EPPR=489.42;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=1929;QR=8946;RO=224;RPL=0;RPP=107.241;RPPR=489.42;RPR=48;RUN=1;SAF=48;SAP=107.241;SAR=0;SRF=224;SRP=489.42;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:177:134,43:134:5405:43:1726:-102.278,0,-432.974 0/0:31:30,1:30:1184:1:40:0,-5.33625,-102.836 0/0:64:60,4:60:2357:4:163:0,-4.20749,-197.228 dDocent_Contig_1145 17 . A G 1520.45 . AB=0.579545;ABP=7.84676;AC=3;AF=0.5;AN=6;AO=51;CIGAR=1X;DP=88;DPB=88;DPRA=0;EPP=113.755;EPPR=83.3548;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=0.980392;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=2034;QR=1439;RO=37;RPL=0;RPP=113.755;RPPR=83.3548;RPR=51;RUN=1;SAF=51;SAP=113.755;SAR=0;SRF=37;SRP=83.3548;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:43:10,33:10:399:33:1302:-104.504,0,-23.3245 0/1:21:15,6:15:584:6:243:-15.9265,0,-46.5742 0/1:24:12,12:12:456:12:489:-37.1366,0,-34.146 dDocent_Contig_1146 21 . A G 4604.09 . AB=0.0609756;ABP=414.849;AC=0;AF=0;AN=6;AO=15;CIGAR=1X2M1X;DP=246;DPB=246;DPRA=0;EPP=35.5824;EPPR=178.9;GTI=0;LEN=1;MEANALT=2;MQM=60;MQMR=60;NS=3;NUMALT=2;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=581;QR=3203;RO=81;RPL=0;RPP=35.5824;RPPR=178.9;RPR=15;RUN=1;SAF=15;SAP=35.5824;SAR=0;SRF=81;SRP=178.9;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|0:148:43,8,97:43:1684:8,97:314,3851:-304.055,-291.174,-427.231,0,-112.641,-109.267 0|0:42:16,5,21:16:640:5,21:191,844:-64.7507,-53.8993,-105.113,0,-37.0656,-46.4114 0|0:56:22,2,32:22:879:2,32:76,1261:-97.1265,-97.5171,-169.316,0,-66.1849,-62.7832 dDocent_Contig_1147 9 . G A 3786.29 . AB=0.505576;ABP=3.08295;AC=3;AF=0.5;AN=6;AO=136;CIGAR=1X;DP=269;DPB=269;DPRA=0;EPP=298.331;EPPR=287.473;GTI=0;LEN=1;MEANALT=1.33333;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=5157;QR=5003;RO=131;RPL=0;RPP=298.331;RPPR=287.473;RPR=136;RUN=1;SAF=136;SAP=298.331;SAR=0;SRF=131;SRP=287.473;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:156:68,86:68:2606:86:3267:-247.44,0,-187.989 0/1:45:22,23:22:830:23:880:-65.9736,0,-61.47 0/1:68:41,27:41:1567:27:1010:-70.7378,0,-120.831 dDocent_Contig_1148 9 . G A 195.322 . AB=0.160494;ABP=84.1054;AC=1;AF=0.166667;AN=6;AO=14;CIGAR=1X;DP=154;DPB=154;DPRA=3.55263;EPP=33.4109;EPPR=307.016;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=6.93889e-18;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=540;QR=5375;RO=140;RPL=0;RPP=33.4109;RPPR=307.016;RPR=14;RUN=1;SAF=14;SAP=33.4109;SAR=0;SRF=140;SRP=307.016;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:81:68,13:68:2595:13:501:-21.0551,0,-209.359 0/0:19:19,0:19:735:0:0:0,-5.71957,-66.4813 0/0:54:53,1:53:2045:1:39:0,-12.3591,-180.385 dDocent_Contig_1149 26 . G A 2515.46 . AB=0.477778;ABP=3.78238;AC=3;AF=0.5;AN=6;AO=86;CIGAR=1X;DP=180;DPB=180;DPRA=0;EPP=189.757;EPPR=207.129;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=3449;QR=3726;RO=94;RPL=0;RPP=189.757;RPPR=207.129;RPR=86;RUN=1;SAF=86;SAP=189.757;SAR=0;SRF=94;SRP=207.129;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:110:60,50:60:2354:50:2006:-147.62,0,-178.895 0/1:27:14,13:14:563:13:521:-39.11,0,-42.8848 0/1:43:20,23:20:809:23:922:-70.3388,0,-60.1811 dDocent_Contig_1150 10 . T C 5560.11 . AB=0.113269;ABP=404.423;AC=0;AF=0;AN=6;AO=35;CIGAR=1X19M;DP=309;DPB=291.8;DPRA=0;EPP=79.0118;EPPR=59.4686;GTI=0;LEN=1;MEANALT=9.33333;MQM=60;MQMR=60;NS=3;NUMALT=6;ODDS=5.55112e-17;PAIRED=1;PAIREDR=1;PAO=0.285714;PQA=0;PQR=0;PRO=0.285714;QA=1390;QR=984;RO=26;RPL=0;RPP=79.0118;RPPR=59.4686;RPR=35;RUN=1;SAF=35;SAP=79.0118;SAR=0;SRF=26;SRP=59.4686;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|0:162:12,9,0,0,46,63,21:12:457:9,0,0,46,63,21:363,0,0,1817,2436,820:-308.461,-282.15,-316.925,-312.074,-319.634,-349.558,-312.074,-319.634,-349.558,-349.558,-162.567,-170.127,-200.051,-200.051,-186.204,-112.028,-119.588,-149.513,-149.513,0,-130.548,-244.681,-252.241,-282.165,-282.165,-132.657,-82.1185,-275.843 0|0:39:0,4,3,2,12,16,1:0:0:4,3,2,12,16,1:156,120,79,455,604,41:-86.7826,-73.9599,-72.7557,-76.896,-64.073,-75.9929,-80.281,-67.4582,-70.3943,-79.679,-49.4814,-36.6586,-39.5943,-42.9796,-45.869,-37.2941,-24.4716,-27.407,-30.7925,0,-32.4777,-83.3978,-70.575,-73.5111,-76.8962,-46.0964,-33.909,-83.0968 0|0:108:14,0,0,1,14,54,13:14:527:0,0,1,14,54,13:0,0,41,545,2059,529:-166.276,-170.491,-213.667,-170.491,-213.667,-213.667,-167.106,-210.283,-210.283,-209.982,-125.703,-168.88,-168.88,-165.496,-164.666,-1.61319,-44.7874,-44.7874,-41.4029,0,-28.5318,-126.85,-170.027,-170.027,-166.643,-125.239,-1.14412,-166.114 dDocent_Contig_1151 92 . C G 39.2051 . AB=0.173913;ABP=24.253;AC=1;AF=0.166667;AN=6;AO=6;CIGAR=1X;DP=107;DPB=107;DPRA=1.12121;EPP=16.0391;EPPR=222.329;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=3.46945e-18;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=207;QR=3505;RO=101;RPL=6;RPP=16.0391;RPPR=222.329;RPR=0;RUN=1;SAF=6;SAP=16.0391;SAR=0;SRF=101;SRP=222.329;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:51:49,2:49:1689:2:70:0,-8.70513,-145.65 0/1:23:19,4:19:665:4:137:-5.74437,0,-53.2527 0/0:33:33,0:33:1151:0:0:0,-9.93399,-103.899 dDocent_Contig_1152 26 . G A 339.504 . AB=0.207792;ABP=60.1172;AC=1;AF=0.166667;AN=6;AO=18;CIGAR=1X;DP=126;DPB=126;DPRA=5.22727;EPP=42.0968;EPPR=237.529;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=728;QR=4314;RO=108;RPL=0;RPP=42.0968;RPPR=237.529;RPR=18;RUN=1;SAF=18;SAP=42.0968;SAR=0;SRF=108;SRP=237.529;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:77:61,16:61:2434:16:648:-35.4733,0,-196.028 0/0:11:11,0:11:431:0:0:0,-3.31133,-39.1377 0/0:38:36,2:36:1449:2:80:0,-3.84735,-123.064 dDocent_Contig_1153 24 . A C 1947.49 . AB=0.531915;ABP=3.84193;AC=4;AF=0.666667;AN=6;AO=63;CIGAR=1X;DP=107;DPB=107;DPRA=0;EPP=139.813;EPPR=98.5551;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=2507;QR=1757;RO=44;RPL=0;RPP=139.813;RPPR=98.5551;RPR=63;RUN=1;SAF=63;SAP=139.813;SAR=0;SRF=44;SRP=98.5551;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:70:34,36:34:1355:36:1426:-107.517,0,-101.142 1/1:13:0,13:0:0:13:518:-46.967,-3.91339,0 0/1:24:10,14:10:402:14:563:-43.7879,0,-29.3143 dDocent_Contig_1156 41 . C G 200.188 . AB=0.160494;ABP=84.1054;AC=2;AF=0.333334;AN=6;AO=18;CIGAR=1X16M;DP=143;DPB=142.765;DPRA=0;EPP=42.0968;EPPR=98.4079;GTI=0;LEN=1;MEANALT=2.66667;MQM=60;MQMR=60;NS=3;NUMALT=2;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=668;QR=4540;RO=118;RPL=18;RPP=42.0968;RPPR=98.4079;RPR=0;RUN=1;SAF=18;SAP=42.0968;SAR=0;SRF=118;SRP=259.244;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|0:62:54,1,5:54:2079:1,5:26,165:0,-14.2259,-184.651,-2.91569,-171.627,-172.158 0|1:23:17,3,2:17:650:3,2:93,78:-2.33449,0,-52.4652,-1.00633,-46.955,-53.8075 0|1:58:47,0,11:47:1811:0,11:0,425:-21.1327,-35.2811,-183.975,0,-149.079,-145.768 dDocent_Contig_1157 20 . C G 1010.42 . AB=0.278049;ABP=90.7272;AC=2;AF=0.333333;AN=6;AO=61;CIGAR=1X;DP=259;DPB=259;DPRA=0;EPP=21.8416;EPPR=424.32;GTI=0;LEN=1;MEANALT=1;MQM=34.7377;MQMR=56.6566;NS=3;NUMALT=1;ODDS=1.38778e-17;PAIRED=0;PAIREDR=0.717172;PAO=0;PQA=0;PQR=0;PRO=0;QA=2336;QR=7919;RO=198;RPL=0;RPP=135.47;RPPR=432.962;RPR=61;RUN=1;SAF=42;SAP=21.8416;SAR=19;SRF=197;SRP=424.32;SRR=1;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:145:107,38:107:4261:38:1478:-67.4994,0,-330.842 0/0:54:50,4:50:2010:4:151:0,-3.92766,-168.679 0/1:60:41,19:41:1648:19:707:-37.0651,0,-126.446 dDocent_Contig_1159 18 . G A 2038.16 . AB=0.412429;ABP=14.8;AC=3;AF=0.5;AN=6;AO=73;CIGAR=1X;DP=177;DPB=177;DPRA=0;EPP=161.528;EPPR=228.843;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=0.986301;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=2908;QR=4143;RO=104;RPL=0;RPP=161.528;RPPR=228.843;RPR=73;RUN=1;SAF=73;SAP=161.528;SAR=0;SRF=104;SRP=228.843;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:101:51,50:51:2045:50:1981:-148.082,0,-153.83 0/1:17:8,9:8:310:9:358:-27.4653,0,-23.1407 0/1:59:45,14:45:1788:14:569:-33.7906,0,-143.374 dDocent_Contig_1160 9 . G A 785.739 . AB=0.17301;ABP=271.409;AC=3;AF=0.5;AN=6;AO=50;CIGAR=1X;DP=289;DPB=289;DPRA=0;EPP=111.584;EPPR=521.992;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=0.92;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=1890;QR=9155;RO=239;RPL=0;RPP=111.584;RPPR=521.992;RPR=50;RUN=1;SAF=50;SAP=111.584;SAR=0;SRF=239;SRP=521.992;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:140:119,21:119:4581:21:814:-31.4411,0,-370.192 0/1:54:44,10:44:1669:10:362:-16.6652,0,-134.208 0/1:95:76,19:76:2905:19:714:-35.9905,0,-233.023 dDocent_Contig_1164 113 . C G 1551.53 . AB=0.485075;ABP=3.26958;AC=3;AF=0.5;AN=6;AO=65;CIGAR=1X;DP=134;DPB=134;DPRA=0;EPP=144.156;EPPR=152.842;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=2223;QR=2247;RO=69;RPL=0;RPP=144.156;RPPR=152.842;RPR=65;RUN=1;SAF=0;SAP=144.156;SAR=65;SRF=0;SRP=152.842;SRR=69;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:73:27,46:27:848:46:1585:-120.967,0,-54.6329 0/1:26:16,10:16:526:10:335:-22.6484,0,-39.826 0/1:35:26,9:26:873:9:303:-17.0605,0,-68.3433 dDocent_Contig_1165 10 . G A 4293.74 . AB=0.575758;ABP=16.1707;AC=3;AF=0.5;AN=6;AO=152;CIGAR=1X1M1X;DP=264;DPB=264;DPRA=0;EPP=333.074;EPPR=244.044;GTI=0;LEN=1;MEANALT=1.33333;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=0.815789;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=5708;QR=4145;RO=111;RPL=0;RPP=333.074;RPPR=244.044;RPR=152;RUN=1;SAF=152;SAP=333.074;SAR=0;SRF=111;SRP=244.044;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|1:109:46,63:46:1752:63:2356:-179.453,0,-125.124 0|1:86:36,50:36:1298:50:1884:-143.921,0,-91.2218 0|1:69:29,39:29:1095:39:1468:-111.523,0,-77.9747 dDocent_Contig_1166 9 . G A 250.88 . AB=0.2;ABP=57.7314;AC=2;AF=0.333333;AN=6;AO=14;CIGAR=1X;DP=94;DPB=94;DPRA=1.45833;EPP=33.4109;EPPR=176.728;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=525;QR=3051;RO=80;RPL=0;RPP=33.4109;RPPR=176.728;RPR=14;RUN=1;SAF=14;SAP=33.4109;SAR=0;SRF=80;SRP=176.728;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:50:38,12:38:1449:12:459:-26.6084,0,-115.636 0/1:20:18,2:18:690:2:66:-0.24593,0,-56.4117 0/0:24:24,0:24:912:0:0:0,-7.22472,-82.3954 dDocent_Contig_1167 10 . A G 2537.98 . AB=0.323625;ABP=86.5031;AC=3;AF=0.5;AN=6;AO=100;CIGAR=1X;DP=309;DPB=309;DPRA=0;EPP=220.158;EPPR=456.848;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=1.38778e-17;PAIRED=0.81;PAIREDR=0.665072;PAO=0;PQA=0;PQR=0;PRO=0;QA=3906;QR=8265;RO=209;RPL=0;RPP=220.158;RPPR=456.848;RPR=100;RUN=1;SAF=100;SAP=220.158;SAR=0;SRF=209;SRP=456.848;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:189:128,61:128:5070:61:2397:-159,0,-399.299 0/1:62:40,22:40:1560:22:863:-59.3154,0,-121.98 0/1:58:41,17:41:1635:17:646:-41.0055,0,-129.925 dDocent_Contig_1169 50 . A T 187.688 . AB=0.361111;ABP=9.04217;AC=2;AF=0.333333;AN=6;AO=14;CIGAR=1X;DP=47;DPB=47;DPRA=0;EPP=33.4109;EPPR=74.6689;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=392;QR=1225;RO=33;RPL=14;RPP=33.4109;RPPR=74.6689;RPR=0;RUN=1;SAF=14;SAP=33.4109;SAR=0;SRF=33;SRP=74.6689;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:11:10,1:10:382:1:30:0,-0.311763,-31.7309 0/1:21:16,5:16:589:5:137:-6.27907,0,-47.0188 0/1:15:7,8:7:254:8:225:-16.0119,0,-18.6902 dDocent_Contig_1170 8 . C T 227.098 . AB=0.166667;ABP=107.241;AC=3;AF=0.5;AN=6;AO=18;CIGAR=1X;DP=108;DPB=108;DPRA=0;EPP=42.0968;EPPR=198.443;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=663;QR=3440;RO=90;RPL=0;RPP=42.0968;RPPR=198.443;RPR=18;RUN=1;SAF=18;SAP=42.0968;SAR=0;SRF=90;SRP=198.443;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:48:43,5:43:1637:5:192:-3.20057,0,-133.138 0/1:32:27,5:27:1028:5:182:-7.10083,0,-83.1968 0/1:28:20,8:20:775:8:289:-17.9222,0,-61.6494 dDocent_Contig_1171 9 . G A 1100.35 . AB=0.212121;ABP=193.047;AC=2;AF=0.333333;AN=6;AO=58;CIGAR=1X;DP=297;DPB=297;DPRA=0;EPP=128.956;EPPR=521.992;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=2210;QR=9153;RO=239;RPL=0;RPP=128.956;RPPR=521.992;RPR=58;RUN=1;SAF=58;SAP=128.956;SAR=0;SRF=239;SRP=521.992;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:147:113,34:113:4311:34:1303:-73.3084,0,-343.811 0/0:33:31,2:31:1184:2:72:0,-3.09808,-100.021 0/1:117:95,22:95:3658:22:835:-40.2497,0,-294.112 dDocent_Contig_1172 10 . G A 757.964 . AB=0.234483;ABP=91.8011;AC=2;AF=0.333333;AN=6;AO=35;CIGAR=1X;DP=211;DPB=211;DPRA=0;EPP=79.0118;EPPR=385.189;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=1400;QR=6972;RO=176;RPL=0;RPP=79.0118;RPPR=385.189;RPR=35;RUN=1;SAF=35;SAP=79.0118;SAR=0;SRF=176;SRP=385.189;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:96:77,19:77:3027:19:757:-39.5507,0,-243.626 0/1:49:34,15:34:1364:15:602:-39.7686,0,-108.264 0/0:66:65,1:65:2581:1:41:0,-15.7734,-228.331 dDocent_Contig_1173 53 . G A 947.608 . AB=0.666667;ABP=14.5915;AC=3;AF=0.5;AN=6;AO=32;CIGAR=1X;DP=48;DPB=48;DPRA=0;EPP=72.4974;EPPR=37.7539;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=1263;QR=634;RO=16;RPL=32;RPP=72.4974;RPPR=37.7539;RPR=0;RUN=1;SAF=32;SAP=72.4974;SAR=0;SRF=16;SRP=37.7539;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:21:3,18:3:116:18:705:-57.451,0,-4.49388 0/1:11:5,6:5:199:6:238:-18.4819,0,-14.9767 0/1:16:8,8:8:319:8:320:-24.3503,0,-24.2586 dDocent_Contig_1175 51 . A G 4204.71 . AB=0.704348;ABP=86.4326;AC=3;AF=0.5;AN=6;AO=162;CIGAR=1X;DP=230;DPB=230;DPRA=0;EPP=354.789;EPPR=150.67;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=5494;QR=2475;RO=68;RPL=162;RPP=354.789;RPPR=150.67;RPR=0;RUN=1;SAF=162;SAP=354.789;SAR=0;SRF=68;SRP=150.67;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:125:24,101:24:882:101:3445:-272.61,0,-42.0685 0/1:37:15,22:15:498:22:715:-53.5093,0,-33.9907 0/1:68:29,39:29:1095:39:1334:-99.8751,0,-78.3877 dDocent_Contig_1176 29 . T A 8283.13 . AB=0.813433;ABP=231.696;AC=4;AF=0.666667;AN=6;AO=265;CIGAR=1X7M;DP=320;DPB=320;DPRA=0;EPP=578.45;EPPR=87.6977;GTI=0;LEN=1;MEANALT=3;MQM=60;MQMR=60;NS=3;NUMALT=2;ODDS=2.77556e-17;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=10257;QR=1530;RO=39;RPL=0;RPP=578.45;RPPR=87.6977;RPR=265;RUN=1;SAF=265;SAP=578.45;SAR=0;SRF=39;SRP=87.6977;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|1:157:22,0,133:22:861:0,133:0,5133:-415.042,-421.664,-492.459,0,-70.9554,-30.9184 1|1:52:4,0,47:4:160:0,47:0,1843:-151.303,-152.508,-165.689,-0.968085,-14.1484,0 0|1:111:13,9,85:13:509:9,85:361,3281:-265.49,-239.658,-278.803,0,-12.1031,-16.2641 dDocent_Contig_1177 32 . T C 113.032 . AB=0.111111;ABP=156.702;AC=1;AF=0.166667;AN=6;AO=13;CIGAR=1X;DP=198;DPB=198;DPRA=2.88889;EPP=31.2394;EPPR=404.733;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=6.93889e-18;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=530;QR=7322;RO=185;RPL=0;RPP=31.2394;RPPR=404.733;RPR=13;RUN=1;SAF=13;SAP=31.2394;SAR=0;SRF=185;SRP=404.733;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:117:104,13:104:4110:13:530:-12.8261,0,-334.653 0/0:38:38,0:38:1490:0:0:0,-11.4391,-134.35 0/0:43:43,0:43:1722:0:0:0,-12.9443,-155.2 dDocent_Contig_1179 13 . G A 894.991 . AB=0.115044;ABP=875.712;AC=3;AF=0.5;AN=6;AO=78;CIGAR=1X2M1X;DP=678;DPB=678;DPRA=0;EPP=172.385;EPPR=1130;GTI=0;LEN=1;MEANALT=5.66667;MQM=59.9231;MQMR=59.6243;NS=3;NUMALT=3;ODDS=0;PAIRED=1;PAIREDR=0.965318;PAO=0;PQA=0;PQR=0;PRO=0;QA=3055;QR=20106;RO=519;RPL=0;RPP=172.385;RPPR=1130;RPR=78;RUN=1;SAF=78;SAP=172.385;SAR=0;SRF=519;SRP=1130;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|1:318:257,27,10,18:257:9961:27,10,18:1068,310,703:-10.5476,0,-809.741,-63.1877,-793.134,-878.019,-34.0792,-764.034,-827.195,-846.511 0|1:152:113,22,11,1:113:4357:22,11,1:845,359,33:-35.3616,0,-350.979,-40.8997,-329.112,-395.152,-66.7161,-354.939,-395.801,-423.99 0|1:208:149,29,6,19:149:5788:29,6,19:1142,194,733:-49.1128,0,-466.566,-78.3566,-459.683,-551.825,-38.5077,-419.833,-498.168,-508.062 dDocent_Contig_1181 16 . A G 1360.63 . AB=0.306358;ABP=59.3556;AC=2;AF=0.333333;AN=6;AO=57;CIGAR=1M1X1M;DP=230;DPB=230;DPRA=0;EPP=118.251;EPPR=308.374;GTI=0;LEN=1;MEANALT=2.66667;MQM=60;MQMR=60;NS=3;NUMALT=2;ODDS=0;PAIRED=0.192982;PAIREDR=0.89375;PAO=0;PQA=0;PQR=0;PRO=0;QA=2265;QR=6346;RO=160;RPL=0;RPP=126.784;RPPR=350.446;RPR=57;RUN=1;SAF=56;SAP=118.251;SAR=1;SRF=155;SRP=308.374;SRR=5;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|1:113:66,6,40:66:2607:6,40:225,1578:-109.962,-111.403,-324.111,0,-196.102,-202.488 0|0:57:47,2,4:47:1864:2,4:80,161:0,-7.71027,-160.613,-0.830838,-147.945,-153.164 0|1:60:47,0,13:47:1875:0,13:0,526:-29.6245,-43.7729,-198.179,0,-154.809,-150.895 dDocent_Contig_1182 62 . G T 88.592 . AB=0.2;ABP=26.4622;AC=2;AF=0.333333;AN=6;AO=6;CIGAR=1X;DP=71;DPB=71;DPRA=0.365854;EPP=16.0391;EPPR=144.156;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=224;QR=2351;RO=65;RPL=6;RPP=16.0391;RPPR=144.156;RPR=0;RUN=1;SAF=6;SAP=16.0391;SAR=0;SRF=65;SRP=144.156;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:41:41,0:41:1472:0:0:0,-12.3422,-132.768 0/1:22:17,5:17:630:5:188:-10.6612,0,-50.4111 0/1:8:7,1:7:249:1:36:-1.19004,0,-20.3473 dDocent_Contig_1183 7 . T C 4172.3 . AB=0.467857;ABP=5.523;AC=2;AF=0.333333;AN=6;AO=131;CIGAR=1X3M1X;DP=280;DPB=280;DPRA=0;EPP=287.473;EPPR=183.243;GTI=0;LEN=1;MEANALT=3;MQM=60;MQMR=60;NS=3;NUMALT=2;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=5005;QR=3153;RO=83;RPL=0;RPP=287.473;RPPR=183.243;RPR=131;RUN=1;SAF=131;SAP=287.473;SAR=0;SRF=83;SRP=183.243;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|0:106:38,29,39:38:1426:29,39:1103,1577:-115.983,-36.9645,-145.029,0,-26.3356,-105.062 0|1:82:21,48,12:21:802:48,12:1835,485:-144.302,0,-51.3934,-120.986,-36.217,-183.175 0|1:92:24,54,12:24:925:54,12:2067,464:-162.469,0,-59.7565,-140.533,-46.8619,-212.88 dDocent_Contig_1186 49 . A G 2519.2 . AB=0.222222;ABP=9.04217;AC=1;AF=0.166667;AN=6;AO=4;CIGAR=1M10I3M10D2M;DP=79;DPB=79;DPRA=2.53846;EPP=11.6962;EPPR=0;GTI=0;LEN=1;MEANALT=2.5;MQM=60;MQMR=0;NS=3;NUMALT=2;ODDS=0;PAIRED=0.5;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=153;QR=0;RO=0;RPL=4;RPP=11.6962;RPPR=0;RPR=0;RUN=1;SAF=4;SAP=11.6962;SAR=0;SRF=0;SRP=0;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|0:57:0,2,54:0:0:2,54:76,2033:-182.834,-176.601,-175.999,-16.2556,-10.0161,0 1|0:9:0,2,7:0:0:2,7:77,249:-26.9745,-20.6456,-20.0435,-6.70708,0,-4.59987 0|0:13:0,0,13:0:0:0,13:0,481:-43.633,-43.633,-43.633,-3.91339,-3.91339,0 dDocent_Contig_1187 10 . A G 217.858 . AB=0.0909091;ABP=50.9801;AC=0;AF=0;AN=6;AO=3;CIGAR=2X4M1D1M;DP=40;DPB=39.625;DPRA=0;EPP=9.52472;EPPR=59.4686;GTI=0;LEN=1;MEANALT=2;MQM=60;MQMR=60;NS=3;NUMALT=2;ODDS=6.93889e-18;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=111;QR=1027;RO=26;RPL=0;RPP=9.52472;RPPR=59.4686;RPR=3;RUN=1;SAF=3;SAP=9.52472;SAR=0;SRF=26;SRP=59.4686;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|0:19:13,4,2:13:510:4,2:156,74:-8.92254,0,-40.7566,-6.78862,-35.9098,-48.1299 0|0:14:8,5,1:8:321:5,1:188,37:-12.9957,0,-24.9719,-12.3779,-23.4534,-38.5418 0|0:7:5,2,0:5:196:2,0:79,0:-5.39042,0,-15.9077,-6.89557,-16.5098,-23.0116 dDocent_Contig_1188 8 . C T 1094.09 . AB=0.25641;ABP=103.51;AC=3;AF=0.5;AN=6;AO=50;CIGAR=1X;DP=195;DPB=195;DPRA=0;EPP=111.584;EPPR=311.359;GTI=0;LEN=1;MEANALT=1.66667;MQM=59.38;MQMR=60;NS=3;NUMALT=1;ODDS=1.38778e-17;PAIRED=0.92;PAIREDR=0.725352;PAO=0;PQA=0;PQR=0;PRO=0;QA=1927;QR=5471;RO=142;RPL=0;RPP=111.584;RPPR=311.359;RPR=50;RUN=1;SAF=50;SAP=111.584;SAR=0;SRF=142;SRP=311.359;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:95:61,32:61:2359:32:1231:-81.7615,0,-184.134 0/1:33:28,5:28:1069:5:195:-7.99021,0,-86.5803 0/1:67:53,13:53:2043:13:501:-25.1807,0,-163.845 dDocent_Contig_1189 8 . C T 138.107 . AB=0.225806;ABP=23.254;AC=1;AF=0.166667;AN=6;AO=7;CIGAR=1X;DP=54;DPB=54;DPRA=2.69565;EPP=18.2106;EPPR=105.07;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=270;QR=1806;RO=47;RPL=0;RPP=18.2106;RPPR=105.07;RPR=7;RUN=1;SAF=7;SAP=18.2106;SAR=0;SRF=47;SRP=105.07;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:31:24,7:24:916:7:270:-15.3336,0,-73.4224 0/0:10:10,0:10:386:0:0:0,-3.0103,-35.097 0/0:13:13,0:13:504:0:0:0,-3.91339,-45.7089 dDocent_Contig_1190 13 . T C 1302.11 . AB=0.291892;ABP=72.6031;AC=3;AF=0.5;AN=6;AO=54;CIGAR=1X2M1X;DP=185;DPB=185;DPRA=0;EPP=120.27;EPPR=287.473;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=0.814815;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=2116;QR=5178;RO=131;RPL=0;RPP=120.27;RPPR=287.473;RPR=54;RUN=1;SAF=54;SAP=120.27;SAR=0;SRF=131;SRP=287.473;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|1:98:76,22:76:3014:22:867:-48.8423,0,-241.86 0|1:32:20,12:20:788:12:470:-33.0167,0,-61.608 0|1:55:35,20:35:1376:20:779:-53.8751,0,-107.545 dDocent_Contig_1191 10 . T C 61.7044 . AB=0.333333;ABP=5.18177;AC=1;AF=0.166667;AN=6;AO=3;CIGAR=1X;DP=32;DPB=32;DPRA=0.782609;EPP=9.52472;EPPR=65.983;GTI=0;LEN=1;MEANALT=1;MQM=44;MQMR=49.3793;NS=3;NUMALT=1;ODDS=0;PAIRED=0;PAIREDR=0.758621;PAO=0;PQA=0;PQR=0;PRO=0;QA=119;QR=1164;RO=29;RPL=0;RPP=9.52472;RPPR=65.983;RPR=3;RUN=1;SAF=3;SAP=9.52472;SAR=0;SRF=29;SRP=65.983;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:14:14,0:14:560:0:0:0,-4.21442,-35.0721 0/1:9:6,3:6:241:3:119:-7.99434,0,-19.357 0/0:9:9,0:9:363:0:0:0,-2.70927,-33.0343 dDocent_Contig_1192 10 . T A 193.029 . AB=0.214286;ABP=12.937;AC=1;AF=0.166667;AN=6;AO=3;CIGAR=1X2M1X;DP=54;DPB=54;DPRA=1.75;EPP=9.52472;EPPR=85.5263;GTI=0;LEN=1;MEANALT=3;MQM=60;MQMR=60;NS=3;NUMALT=3;ODDS=0;PAIRED=1;PAIREDR=0.842105;PAO=0;PQA=0;PQR=0;PRO=0;QA=117;QR=1453;RO=38;RPL=0;RPP=9.52472;RPPR=85.5263;RPR=3;RUN=1;SAF=3;SAP=9.52472;SAR=0;SRF=38;SRP=85.5263;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|1:14:9,3,0,0:9:349:3,0,0:117,0,0:-6.97717,0,-27.863,-9.68644,-28.7661,-38.3886,-9.68644,-28.7661,-38.3886,-38.3886 0|0:32:21,0,7,4:21:801:0,7,4:0,270,156:-15.8486,-22.1702,-87.8757,0,-65.7022,-63.5949,-9.34515,-75.0513,-52.8773,-73.8471 0|0:8:8,0,0,0:8:303:0,0,0:0,0,0:0,-2.40824,-27.628,-2.40824,-27.628,-27.628,-2.40824,-27.628,-27.628,-27.628 dDocent_Contig_1193 24 . T A 83.1538 . AB=0.179487;ABP=37.8095;AC=2;AF=0.333333;AN=6;AO=7;CIGAR=1X;DP=40;DPB=40;DPRA=19.5;EPP=18.2106;EPPR=74.6689;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=254;QR=1322;RO=33;RPL=0;RPP=18.2106;RPPR=74.6689;RPR=7;RUN=1;SAF=7;SAP=18.2106;SAR=0;SRF=33;SRP=74.6689;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:28:24,4:24:965:4:132:-3.77393,0,-78.7186 0/0:1:1,0:1:41:0:0:0,-0.30103,-4.09457 0/1:11:8,3:8:316:3:122:-8.06116,0,-25.4925 dDocent_Contig_1194 22 . C T 512.098 . AB=0.30137;ABP=28.0269;AC=3;AF=0.5;AN=6;AO=22;CIGAR=1X;DP=73;DPB=73;DPRA=0;EPP=50.7827;EPPR=113.755;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=0.727273;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=863;QR=2024;RO=51;RPL=0;RPP=50.7827;RPPR=113.755;RPR=22;RUN=1;SAF=22;SAP=50.7827;SAR=0;SRF=51;SRP=113.755;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:26:15,11:15:600:11:443:-32.3991,0,-46.5098 0/1:17:14,3:14:547:3:95:-3.74245,0,-44.4517 0/1:30:22,8:22:877:8:325:-20.5885,0,-70.2073 dDocent_Contig_1195 18 . G C 670.742 . AB=0.210191;ABP=117.545;AC=3;AF=0.5;AN=6;AO=33;CIGAR=1X;DP=157;DPB=157;DPRA=0;EPP=74.6689;EPPR=272.273;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=1320;QR=4929;RO=124;RPL=0;RPP=74.6689;RPPR=272.273;RPR=33;RUN=1;SAF=33;SAP=74.6689;SAR=0;SRF=124;SRP=272.273;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:63:54,9:54:2133:9:350:-12.8917,0,-173.187 0/1:21:12,9:12:488:9:363:-26.713,0,-37.9497 0/1:73:58,15:58:2308:15:607:-32.9924,0,-185.907 dDocent_Contig_1196 23 . A C 207.845 . AB=0.137405;ABP=152.61;AC=3;AF=0.5;AN=6;AO=18;CIGAR=1X;DP=131;DPB=131;DPRA=0;EPP=42.0968;EPPR=248.387;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=6.93889e-18;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=718;QR=4414;RO=113;RPL=0;RPP=42.0968;RPPR=248.387;RPR=18;RUN=1;SAF=18;SAP=42.0968;SAR=0;SRF=113;SRP=248.387;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:69:61,8:61:2402:8:322:-8.57707,0,-195.585 0/1:19:14,5:14:546:5:194:-12.1124,0,-43.7622 0/1:43:38,5:38:1466:5:202:-5.61779,0,-119.259 dDocent_Contig_1197 18 . C T 889.079 . AB=0.290076;ABP=53.1531;AC=3;AF=0.5;AN=6;AO=38;CIGAR=1X;DP=131;DPB=131;DPRA=0;EPP=85.5263;EPPR=204.957;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=6.93889e-18;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=1475;QR=3693;RO=93;RPL=0;RPP=85.5263;RPPR=204.957;RPR=38;RUN=1;SAF=38;SAP=85.5263;SAR=0;SRF=93;SRP=204.957;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:74:44,30:44:1742:30:1206:-86.536,0,-134.723 0/1:19:17,2:17:665:2:81:-1.96616,0,-54.4601 0/1:38:32,6:32:1286:6:188:-5.77796,0,-104.569 dDocent_Contig_1198 85 . A G 1374.74 . AB=0.75;ABP=39.9253;AC=3;AF=0.5;AN=6;AO=51;CIGAR=1M1I5M1X3M;DP=68;DPB=73.1;DPRA=0;EPP=113.755;EPPR=37.7539;GTI=0;LEN=1;MEANALT=1.33333;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=1806;QR=560;RO=16;RPL=51;RPP=113.755;RPPR=37.7539;RPR=0;RUN=1;SAF=51;SAP=113.755;SAR=0;SRF=16;SRP=37.7539;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|1:17:5,11:5:173:11:377:-29.0846,0,-10.7354 0|1:21:5,16:5:184:16:585:-46.6647,0,-10.5968 0|1:30:6,24:6:203:24:844:-67.2481,0,-9.57028 dDocent_Contig_1199 17 . T C 7217.39 . AB=0.217949;ABP=326.393;AC=1;AF=0.166667;AN=6;AO=102;CIGAR=2X;DP=468;DPB=468;DPRA=0;EPP=224.5;EPPR=263.587;GTI=0;LEN=1;MEANALT=3;MQM=60;MQMR=60;NS=3;NUMALT=2;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=4072;QR=4567;RO=120;RPL=0;RPP=224.5;RPPR=263.587;RPR=102;RUN=1;SAF=102;SAP=224.5;SAR=0;SRF=120;SRP=263.587;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 1|0:230:60,67,96:60:2287:67,96:2682,3672:-316.577,-113.698,-281.129,-33.3508,0,-192.044 0|0:74:21,11,42:21:781:11,42:442,1617:-126.426,-96.3218,-156.923,0,-27.4647,-51.2545 0|0:164:39,24,96:39:1499:24,96:948,3613:-284.258,-217.992,-333.825,0,-45.0422,-94.1499 dDocent_Contig_1205 14 . A T 1012.58 . AB=0.183673;ABP=258.535;AC=3;AF=0.5;AN=6;AO=54;CIGAR=1X;DP=294;DPB=294;DPRA=0;EPP=120.27;EPPR=524.164;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=2159;QR=9584;RO=240;RPL=0;RPP=120.27;RPPR=524.164;RPR=54;RUN=1;SAF=54;SAP=120.27;SAR=0;SRF=240;SRP=524.164;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:119:105,14:105:4187:14:561:-15.0098,0,-340.978 0/1:87:70,17:70:2801:17:681:-35.4292,0,-226.007 0/1:88:65,23:65:2596:23:917:-56.342,0,-207.277 dDocent_Contig_1206 29 . T C 429.412 . AB=0.275362;ABP=33.2536;AC=3;AF=0.5;AN=6;AO=19;CIGAR=1X;DP=69;DPB=69;DPRA=0;EPP=44.2683;EPPR=111.584;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=740;QR=1789;RO=50;RPL=0;RPP=44.2683;RPPR=111.584;RPR=19;RUN=1;SAF=19;SAP=44.2683;SAR=0;SRF=50;SRP=111.584;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:41:29,12:29:1056:12:479:-31.1177,0,-82.9869 0/1:19:13,6:13:437:6:230:-15.3428,0,-33.9237 0/1:9:8,1:8:296:1:31:-0.390184,0,-24.2817 dDocent_Contig_1207 12 . C T 217.121 . AB=0.144578;ABP=94.0813;AC=2;AF=0.333334;AN=6;AO=12;CIGAR=8M1X6M;DP=111;DPB=114.4;DPRA=0;EPP=21.1059;EPPR=65.983;GTI=0;LEN=1;MEANALT=11;MQM=25.6667;MQMR=52.8276;NS=3;NUMALT=9;ODDS=1.38778e-17;PAIRED=0;PAIREDR=0.758621;PAO=0;PQA=0;PQR=0;PRO=0;QA=308;QR=1092;RO=29;RPL=0;RPP=29.068;RPPR=65.983;RPR=12;RUN=1;SAF=11;SAP=21.1059;SAR=1;SRF=29;SRP=65.983;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|1:43:11,0,9,0,5,0,5,0,3,3:11:415:0,9,0,5,0,5,0,3,3:0,157,0,196,0,70,0,120,67:-11.6621,-14.9734,-48.8363,-5.93127,-39.7969,-37.0876,-14.9734,-48.8363,-39.7969,-48.8363,0,-33.8767,-24.8376,-33.8767,-32.3715,-14.9734,-48.8363,-39.7969,-48.8363,-33.8767,-48.8363,-11.5126,-45.3756,-36.3469,-45.3756,-30.4165,-45.3756,-43.8704,-14.9734,-48.8363,-39.7969,-48.8363,-33.8767,-48.8363,-45.3756,-48.8363,-5.06892,-38.9403,-29.9005,-38.9403,-23.9778,-38.9403,-35.4796,-38.9403,-38.0372,-10.6504,-44.516,-35.4806,-44.516,-29.5557,-44.516,-41.0575,-44.516,-34.6194,-43.6129 0|0:28:8,2,4,6,0,0,3,4,0,0:8:308:2,4,6,0,0,3,4,0,0:40,44,42,0,0,42,60,0,0:-0.734768,-0.674871,-21.1151,-1.41129,-19.9962,-21.2516,-2.57076,-21.1575,-21.9046,-21.809,-3.14301,-21.7172,-22.4557,-23.6152,-24.1778,-3.14301,-21.7172,-22.4557,-23.6152,-24.1778,-24.1778,-1.05286,-19.6361,-20.3772,-21.5406,-22.0963,-22.0963,-21.1932,0,-18.5875,-19.3296,-20.4944,-21.0476,-21.0476,-18.9682,-19.8435,-3.14301,-21.7172,-22.4557,-23.6152,-24.1778,-24.1778,-22.0963,-21.0476,-24.1778,-3.14301,-21.7172,-22.4557,-23.6152,-24.1778,-24.1778,-22.0963,-21.0476,-24.1778,-24.1778 0|1:40:10,0,4,2,0,6,1,0,0,9:10:369:0,4,2,0,6,1,0,0,9:0,44,14,0,230,14,0,0,241:-13.5625,-16.5728,-45.6673,-14.8517,-43.9472,-42.743,-16.3839,-45.4783,-43.7602,-44.8762,-16.5728,-45.6673,-43.9472,-45.4783,-45.6673,-8.14361,-37.2471,-35.5308,-37.0602,-37.2471,-35.4409,-15.8791,-44.9742,-43.2548,-44.7856,-44.9742,-36.5547,-44.6731,-16.5728,-45.6673,-43.9472,-45.4783,-45.6673,-37.2471,-44.9742,-45.6673,-16.5728,-45.6673,-43.9472,-45.4783,-45.6673,-37.2471,-44.9742,-45.6673,-45.6673,0,-29.1162,-27.4005,-28.9297,-29.1162,-20.6968,-28.4238,-29.1162,-29.1162,-26.4069 dDocent_Contig_1208 38 . A G 1927.4 . AB=0.270833;ABP=46.8017;AC=5;AF=0.833333;AN=6;AO=26;CIGAR=1X1M;DP=96;DPB=96;DPRA=0;EPP=59.4686;EPPR=42.0968;GTI=0;LEN=1;MEANALT=2;MQM=60;MQMR=60;NS=3;NUMALT=2;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=1029;QR=720;RO=18;RPL=0;RPP=59.4686;RPPR=42.0968;RPR=26;RUN=1;SAF=26;SAP=59.4686;SAR=0;SRF=18;SRP=42.0968;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 1|1:29:5,19,5:5:199:19,5:752,203:-60.7398,-0.365207,-11.0268,-45.5005,0,-60.3809 1|1:39:6,16,17:6:239:16,17:626,663:-84.463,-34.8026,-49.6681,-31.7791,0,-46.3434 0|1:28:7,17,4:7:282:17,4:670,163:-53.0012,0,-18.1226,-41.6586,-9.79107,-63.7 dDocent_Contig_1209 25 . A C 114.195 . AB=0.142857;ABP=65.0524;AC=1;AF=0.166667;AN=6;AO=10;CIGAR=1X;DP=131;DPB=131;DPRA=1.22368;EPP=24.725;EPPR=265.758;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=401;QR=4787;RO=121;RPL=0;RPP=24.725;RPPR=265.758;RPR=10;RUN=1;SAF=10;SAP=24.725;SAR=0;SRF=121;SRP=265.758;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:56:48,8:48:1912:8:327:-12.9424,0,-155.422 0/0:37:35,2:35:1408:2:74:0,-4.11409,-119.949 0/0:38:38,0:38:1467:0:0:0,-11.4391,-132.272 dDocent_Contig_1210 206 . N G 76.8682 . AB=0;ABP=0;AC=2;AF=1;AN=2;AO=2;CIGAR=1X;DP=2;DPB=2;DPRA=0;EPP=7.35324;EPPR=0;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=0;NS=1;NUMALT=1;ODDS=5.99146;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=81;QR=0;RO=0;RPL=2;RPP=7.35324;RPPR=0;RPR=0;RUN=1;SAF=0;SAP=7.35324;SAR=2;SRF=0;SRP=0;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 1/1:2:0,2:0:0:2:81:-7.68573,-0.60206,0 ./.:.:.:.:.:.:.:. ./.:.:.:.:.:.:.:. dDocent_Contig_1211 14 . A G 113.178 . AB=0.212121;ABP=26.7649;AC=2;AF=0.333333;AN=6;AO=7;CIGAR=1X;DP=43;DPB=43;DPRA=1.65;EPP=18.2106;EPPR=81.1833;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=0.972222;PAO=0;PQA=0;PQR=0;PRO=0;QA=267;QR=1458;RO=36;RPL=0;RPP=18.2106;RPPR=81.1833;RPR=7;RUN=1;SAF=7;SAP=18.2106;SAR=0;SRF=36;SRP=81.1833;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:25:21,4:21:851:4:145:-5.87642,0,-69.374 0/1:8:5,3:5:201:3:122:-8.96425,0,-16.0623 0/0:10:10,0:10:406:0:0:0,-3.0103,-36.9 dDocent_Contig_1212 34 . A T 54.3399 . AB=0.16;ABP=28.1125;AC=1;AF=0.166667;AN=6;AO=5;CIGAR=1X;DP=65;DPB=65;DPRA=0.8;EPP=13.8677;EPPR=133.299;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=0.933333;PAO=0;PQA=0;PQR=0;PRO=0;QA=197;QR=2384;RO=60;RPL=0;RPP=13.8677;RPPR=133.299;RPR=5;RUN=1;SAF=5;SAP=13.8677;SAR=0;SRF=60;SRP=133.299;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:25:25,0:25:999:0:0:0,-7.52575,-90.2082 0/0:15:14,1:14:556:1:37:0,-0.817621,-46.682 0/1:25:21,4:21:829:4:160:-7.25768,0,-67.3958 dDocent_Contig_1213 6 . C T 65.3874 . AB=0.235294;ABP=13.3567;AC=1;AF=0.166667;AN=6;AO=10;CIGAR=1X;DP=116;DPB=116;DPRA=0;EPP=24.725;EPPR=233.186;GTI=0;LEN=1;MEANALT=1;MQM=55.3;MQMR=52.3019;NS=3;NUMALT=1;ODDS=0;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=335;QR=3633;RO=106;RPL=0;RPP=24.725;RPPR=233.186;RPR=10;RUN=1;SAF=0;SAP=24.725;SAR=10;SRF=0;SRP=233.186;SRR=106;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:63:60,3:60:2060:3:111:0,-8.64856,-165.921 0/1:17:13,4:13:459:4:146:-8.36265,0,-24.689 0/0:36:33,3:33:1114:3:78:0,-3.56068,-81.002 dDocent_Contig_1214 29 . C T 296.45 . AB=0.15873;ABP=130.472;AC=2;AF=0.333333;AN=6;AO=21;CIGAR=1X;DP=140;DPB=140;DPRA=0;EPP=48.6112;EPPR=261.416;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=820;QR=4766;RO=119;RPL=0;RPP=48.6112;RPPR=261.416;RPR=21;RUN=1;SAF=21;SAP=48.6112;SAR=0;SRF=119;SRP=261.416;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:78:66,12:66:2666:12:464:-18.6303,0,-216.574 0/0:14:13,1:13:515:1:38:0,-0.417151,-42.9001 0/1:48:40,8:40:1585:8:318:-14.5371,0,-128.433 dDocent_Contig_1215 16 . C T 3134.95 . AB=0.150538;ABP=101.661;AC=0;AF=0;AN=6;AO=14;CIGAR=1X3M1X;DP=261;DPB=261;DPRA=0;EPP=33.4109;EPPR=298.331;GTI=0;LEN=1;MEANALT=3;MQM=60;MQMR=60;NS=3;NUMALT=2;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=540;QR=5099;RO=136;RPL=0;RPP=33.4109;RPPR=298.331;RPR=14;RUN=1;SAF=14;SAP=33.4109;SAR=0;SRF=136;SRP=298.331;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|0:131:81,0,50:81:3023:0,50:0,1985:-139.409,-163.792,-411.265,0,-247.86,-232.808 0|0:37:21,0,15:21:793:0,15:0,607:-43.7879,-50.1095,-115.09,0,-65.0293,-60.5138 0|0:93:34,14,44:34:1283:14,44:540,1772:-135.821,-101.715,-202.637,0,-60.7941,-91.8956 dDocent_Contig_1216 15 . T C 437.164 . AB=0.457143;ABP=3.56868;AC=2;AF=0.333333;AN=6;AO=16;CIGAR=1X;DP=49;DPB=49;DPRA=1.25;EPP=37.7539;EPPR=74.6689;GTI=0;LEN=1;MEANALT=1;MQM=49.5;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=0;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=626;QR=1237;RO=33;RPL=0;RPP=37.7539;RPPR=74.6689;RPR=16;RUN=1;SAF=16;SAP=37.7539;SAR=0;SRF=33;SRP=74.6689;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:14:14,0:14:518:0:0:0,-4.21442,-46.9526 0/1:11:10,1:10:375:1:39:-0.334792,0,-30.7885 0/1:24:9,15:9:344:15:587:-45.5372,0,-24.0924 dDocent_Contig_1217 8 . T C 9961 . AB=0.693277;ABP=157.459;AC=3;AF=0.5;AN=6;AO=330;CIGAR=1X4M;DP=476;DPB=476;DPRA=0;EPP=719.596;EPPR=278.787;GTI=0;LEN=1;MEANALT=3.66667;MQM=60;MQMR=60;NS=3;NUMALT=2;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=12668;QR=4939;RO=127;RPL=0;RPP=719.596;RPPR=278.787;RPR=330;RUN=1;SAF=330;SAP=719.596;SAR=0;SRF=127;SRP=278.787;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|1:283:84,6,190:84:3255:6,190:236,7280:-572.178,-578.052,-843.642,0,-247.976,-210.193 0|1:55:9,3,40:9:350:3,40:118,1516:-121.574,-114.576,-142.436,0,-19.0512,-16.7175 0|1:138:34,1,100:34:1334:1,100:40,3872:-307.87,-314.81,-424.217,0,-106.438,-79.63 dDocent_Contig_1218 7 . T C 9295.48 . AB=0.062212;ABP=725.5;AC=0;AF=0;AN=6;AO=27;CIGAR=2X4M;DP=434;DPB=434;DPRA=0;EPP=61.6401;EPPR=63.8115;GTI=0;LEN=1;MEANALT=6.66667;MQM=59.9259;MQMR=60;NS=3;NUMALT=4;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=1025;QR=1089;RO=28;RPL=0;RPP=61.6401;RPPR=63.8115;RPR=27;RUN=1;SAF=27;SAP=61.6401;SAR=0;SRF=28;SRP=63.8115;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|0:173:13,26,0,11,113:13:506:26,0,11,113:1001,0,417,4313:-389.513,-311.45,-345.21,-393.426,-353.037,-435.013,-359.236,-318.846,-400.822,-397.511,-40.389,0,-81.9772,-47.7871,-47.9608 0|0:133:6,24,14,7,75:6:231:24,14,7,75:921,546,262,2837:-286.843,-213.324,-225.067,-243.768,-187.409,-258.52,-267.194,-210.836,-241.279,-284.054,-56.3566,0,-30.4407,-53.8687,-52.746 0|0:128:9,19,6,9,73:9:352:19,6,9,73:741,239,346,2804:-258.714,-200.616,-223.839,-241.742,-209.876,-268.878,-233.018,-201.152,-242.278,-259.251,-31.8655,0,-41.1256,-32.4029,-38.8331 dDocent_Contig_1219 10 . T A 217.629 . AB=0.25;ABP=26.8965;AC=3;AF=0.5;AN=6;AO=11;CIGAR=1X;DP=44;DPB=44;DPRA=0;EPP=26.8965;EPPR=74.6689;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=58.2424;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=0.939394;PAO=0;PQA=0;PQR=0;PRO=0;QA=434;QR=1321;RO=33;RPL=0;RPP=26.8965;RPPR=74.6689;RPR=11;RUN=1;SAF=11;SAP=26.8965;SAR=0;SRF=33;SRP=74.6689;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:20:18,2:18:729:2:82:-1.75908,0,-59.211 0/1:11:8,3:8:306:3:121:-7.96887,0,-24.5836 0/1:13:7,6:7:286:6:231:-17.2409,0,-21.2543 dDocent_Contig_1221 7 . T C 772.003 . AB=0.125;ABP=305.931;AC=2;AF=0.333333;AN=6;AO=31;CIGAR=3M1X;DP=248;DPB=281.5;DPRA=0;EPP=70.3259;EPPR=315.702;GTI=0;LEN=1;MEANALT=4.33333;MQM=60;MQMR=60;NS=3;NUMALT=3;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=1195;QR=5441;RO=144;RPL=0;RPP=70.3259;RPPR=315.702;RPR=31;RUN=1;SAF=31;SAP=70.3259;SAR=0;SRF=144;SRP=315.702;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|1:142:80,22,17,19:80:3025:22,17,19:842,617,735:-45.02,0,-241.36,-18.7243,-197.602,-261.584,-8.72207,-187.606,-206.325,-250.986 0|1:39:23,7,3,6:23:872:7,3,6:264,111,227:-14.7134,0,-69.3961,-12.5574,-62.4231,-83.156,-3.02691,-52.8944,-65.4503,-72.7244 0|0:67:41,5,12,6:41:1544:5,12,6:179,433,233:-22.9896,-20.7412,-145.763,0,-111.933,-122.912,-16.1798,-128.12,-107.377,-140.906 dDocent_Contig_1222 156 . T C 54.0774 . AB=0.148148;ABP=32.0437;AC=1;AF=0.166667;AN=6;AO=4;CIGAR=1X;DP=62;DPB=62;DPRA=1.54286;EPP=11.6962;EPPR=128.956;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=163;QR=2300;RO=58;RPL=0;RPP=11.6962;RPPR=128.956;RPR=4;RUN=1;SAF=0;SAP=11.6962;SAR=4;SRF=0;SRP=128.956;SRR=58;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:27:23,4:23:906:4:163:-6.93062,0,-73.7152 0/0:9:9,0:9:350:0:0:0,-2.70927,-31.8578 0/0:26:26,0:26:1044:0:0:0,-7.82678,-94.2542 dDocent_Contig_1223 22 . G A 54.2852 . AB=0.132075;ABP=65.3275;AC=1;AF=0.166667;AN=6;AO=9;CIGAR=1X;DP=185;DPB=185;DPRA=6.61538;EPP=22.5536;EPPR=385.189;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=3.46945e-18;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=330;QR=6898;RO=176;RPL=0;RPP=22.5536;RPPR=385.189;RPR=9;RUN=1;SAF=9;SAP=22.5536;SAR=0;SRF=176;SRP=385.189;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:119:117,2:117:4573:2:76:0,-28.6083,-404.297 0/0:13:13,0:13:499:0:0:0,-3.91339,-45.2453 0/1:53:46,7:46:1826:7:254:-7.25243,0,-148.603 dDocent_Contig_1224 107 . N A 89.2616 . AB=0;ABP=0;AC=4;AF=1;AN=4;AO=3;CIGAR=1X;DP=3;DPB=3;DPRA=0;EPP=9.52472;EPPR=0;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=0;NS=2;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=89;QR=0;RO=0;RPL=0;RPP=9.52472;RPPR=0;RPR=3;RUN=1;SAF=0;SAP=9.52472;SAR=3;SRF=0;SRP=0;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 1/1:1:0,1:0:0:1:34:-3.39891,-0.30103,0 1/1:2:0,2:0:0:2:55:-5.22451,-0.60206,0 ./.:.:.:.:.:.:.:. dDocent_Contig_1225 8 . C T 979.568 . AB=0.315385;ABP=41.4955;AC=3;AF=0.5;AN=6;AO=41;CIGAR=1X;DP=130;DPB=130;DPRA=0;EPP=92.0407;EPPR=196.271;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=0.95122;PAIREDR=0.932584;PAO=0;PQA=0;PQR=0;PRO=0;QA=1573;QR=3429;RO=89;RPL=0;RPP=92.0407;RPPR=196.271;RPR=41;RUN=1;SAF=41;SAP=92.0407;SAR=0;SRF=89;SRP=196.271;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:73:46,27:46:1784:27:1029:-70.9434,0,-138.836 0/1:23:20,3:20:752:3:116:-3.89401,0,-61.0809 0/1:34:23,11:23:893:11:428:-28.6404,0,-70.4542 dDocent_Contig_1227 15 . G T 1543.6 . AB=0.675676;ABP=22.847;AC=3;AF=0.5;AN=6;AO=50;CIGAR=1X;DP=74;DPB=74;DPRA=0;EPP=111.584;EPPR=55.1256;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=0.958333;PAO=0;PQA=0;PQR=0;PRO=0;QA=2013;QR=963;RO=24;RPL=0;RPP=111.584;RPPR=55.1256;RPR=50;RUN=1;SAF=50;SAP=111.584;SAR=0;SRF=24;SRP=55.1256;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:45:11,34:11:446:34:1369:-109.915,0,-26.9488 0/1:10:2,8:2:78:8:323:-26.4287,0,-4.393 0/1:19:11,8:11:439:8:321:-23.5383,0,-34.1445 dDocent_Contig_1228 8 . C T 2648.68 . AB=0.0689655;ABP=96.6082;AC=0;AF=0;AN=6;AO=4;CIGAR=1X3M1X;DP=145;DPB=145;DPRA=0;EPP=11.6962;EPPR=113.755;GTI=0;LEN=1;MEANALT=3;MQM=60;MQMR=60;NS=3;NUMALT=2;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=157;QR=1985;RO=51;RPL=0;RPP=11.6962;RPPR=113.755;RPR=4;RUN=1;SAF=4;SAP=11.6962;SAR=0;SRF=51;SRP=113.755;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|0:58:18,4,35:18:710:4,35:157,1411:-110.853,-103.36,-160.572,0,-45.5085,-47.8844 0|0:62:18,0,43:18:693:0,43:0,1654:-130.541,-135.96,-192.859,0,-57.1578,-44.2135 0|0:25:15,0,10:15:582:0,10:0,403:-28.9975,-33.5129,-81.3222,0,-48.2052,-45.1949 dDocent_Contig_1229 28 . C G 60.1417 . AB=0.135135;ABP=45.7942;AC=2;AF=0.333333;AN=6;AO=5;CIGAR=2X;DP=52;DPB=52;DPRA=1.23333;EPP=13.8677;EPPR=105.07;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=0;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=204;QR=1861;RO=47;RPL=0;RPP=13.8677;RPPR=105.07;RPR=5;RUN=1;SAF=5;SAP=13.8677;SAR=0;SRF=47;SRP=105.07;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|1:25:21,4:21:847:4:163:-7.53268,0,-69.0153 0|0:15:15,0:15:582:0:0:0,-4.51545,-52.7123 0|1:12:11,1:11:432:1:41:-0.482207,0,-35.6188 dDocent_Contig_1231 84 . A G 10032 . AB=0.792541;ABP=321.903;AC=6;AF=1;AN=6;AO=340;CIGAR=1X1M;DP=429;DPB=429;DPRA=0;EPP=741.311;EPPR=63.8115;GTI=0;LEN=1;MEANALT=2.33333;MQM=60;MQMR=60;NS=3;NUMALT=2;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=11504;QR=918;RO=28;RPL=340;RPP=741.311;RPPR=63.8115;RPR=0;RUN=1;SAF=340;SAP=741.311;SAR=0;SRF=28;SRP=63.8115;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 1|1:268:18,35,215:18:583:35,215:1175,7317:-636.325,-546.564,-583.058,-48.1607,0,-30.4663 1|1:57:3,10,44:3:102:10,44:329,1451:-134.705,-109.017,-114.281,-18.3063,0,-13.3373 1|1:104:7,15,81:7:233:15,81:460,2736:-237.689,-202.927,-217.268,-17.9971,0,-12.4788 dDocent_Contig_1232 14 . T C 39.2136 . AB=0.0901961;ABP=374.979;AC=1;AF=0.166667;AN=6;AO=26;CIGAR=1X;DP=446;DPB=446;DPRA=1.58411;EPP=59.4686;EPPR=915.029;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=1026;QR=16656;RO=420;RPL=0;RPP=59.4686;RPPR=915.029;RPR=26;RUN=1;SAF=26;SAP=59.4686;SAR=0;SRF=420;SRP=915.029;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:255:232,23:232:9213:23:910:-5.44418,0,-751.871 0/0:84:81,3:81:3224:3:116:0,-14.469,-279.414 0/0:107:107,0:107:4219:0:0:0,-32.2102,-379.672 dDocent_Contig_1233 48 . T A 2566.74 . AB=0.587097;ABP=13.2232;AC=3;AF=0.5;AN=6;AO=91;CIGAR=1X;DP=155;DPB=155;DPRA=0;EPP=200.614;EPPR=141.985;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=0.96875;PAO=0;PQA=0;PQR=0;PRO=0;QA=3422;QR=2460;RO=64;RPL=0;RPP=200.614;RPPR=141.985;RPR=91;RUN=1;SAF=91;SAP=200.614;SAR=0;SRF=64;SRP=141.985;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:76:28,48:28:1075:48:1820:-141.17,0,-74.1664 0/1:33:16,17:16:618:17:629:-47.003,0,-46.0236 0/1:46:20,26:20:767:26:973:-74.0245,0,-55.5082 dDocent_Contig_1235 7 . T C 4193.08 . AB=0.665094;ABP=53.2;AC=3;AF=0.5;AN=6;AO=141;CIGAR=1X4M;DP=212;DPB=212;DPRA=0;EPP=309.188;EPPR=118.098;GTI=0;LEN=1;MEANALT=3;MQM=60;MQMR=60;NS=3;NUMALT=2;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=5373;QR=2052;RO=53;RPL=0;RPP=309.188;RPPR=118.098;RPR=141;RUN=1;SAF=141;SAP=309.188;SAR=0;SRF=53;SRP=118.098;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|1:121:26,7,88:26:1007:7,88:267,3347:-266.67,-252.592,-333.214,0,-60.8287,-56.241 0|1:24:6,3,15:6:231:3,15:115,580:-45.8377,-38.2056,-56.2691,0,-9.52993,-14.4527 0|1:67:21,5,38:21:814:5,38:175,1446:-112.323,-104.412,-169.788,0,-52.691,-55.4823 dDocent_Contig_1236 52 . T G 243.429 . AB=0.197183;ABP=59.5603;AC=2;AF=0.333333;AN=6;AO=16;CIGAR=1X;DP=96;DPB=96;DPRA=0;EPP=37.7539;EPPR=176.728;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=616;QR=3200;RO=80;RPL=16;RPP=37.7539;RPPR=176.728;RPR=0;RUN=1;SAF=16;SAP=37.7539;SAR=0;SRF=80;SRP=176.728;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:52:42,10:42:1683:10:376:-18.526,0,-136.039 0/0:25:23,2:23:910:2:77:0,-0.216608,-74.8953 0/1:19:15,4:15:607:4:163:-9.33886,0,-49.2487 dDocent_Contig_1237 11 . T C 60.4659 . AB=0.147059;ABP=39.7976;AC=1;AF=0.166667;AN=6;AO=6;CIGAR=1X1M1X;DP=118;DPB=118;DPRA=4.03846;EPP=16.0391;EPPR=237.529;GTI=0;LEN=1;MEANALT=1.5;MQM=60;MQMR=60;NS=3;NUMALT=2;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=238;QR=4288;RO=108;RPL=0;RPP=16.0391;RPPR=237.529;RPR=6;RUN=1;SAF=6;SAP=16.0391;SAR=0;SRF=108;SRP=237.529;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|0:71:66,1,4:66:2613:1,4:41,160:0,-16.4819,-231.221,-6.69666,-218.342,-220.522 0|0:13:13,0,0:13:520:0,0:0,0:0,-3.91339,-47.1468,-3.91339,-47.1468,-47.1468 0|1:34:29,5,0:29:1155:5,0:197,0:-7.8705,0,-93.9961,-16.6004,-95.5012,-111.707 dDocent_Contig_1238 20 . T A 2840.36 . AB=0.452915;ABP=7.30456;AC=3;AF=0.5;AN=6;AO=101;CIGAR=1X3M1X;DP=223;DPB=223;DPRA=0;EPP=222.329;EPPR=265.758;GTI=0;LEN=1;MEANALT=1.33333;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=3955;QR=4664;RO=121;RPL=0;RPP=222.329;RPPR=265.758;RPR=101;RUN=1;SAF=101;SAP=222.329;SAR=0;SRF=121;SRP=265.758;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|1:133:70,63:70:2682:63:2487:-183.95,0,-201.526 0|1:15:13,2:13:516:2:73:-2.41585,0,-42.2737 0|1:75:38,36:38:1466:36:1395:-103.141,0,-109.539 dDocent_Contig_1239 133 . C T 3792.7 . AB=0.525692;ABP=4.46081;AC=3;AF=0.5;AN=6;AO=133;CIGAR=1X;DP=253;DPB=253;DPRA=0;EPP=291.816;EPPR=263.587;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=1.38778e-17;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=5114;QR=4663;RO=120;RPL=0;RPP=291.816;RPPR=263.587;RPR=133;RUN=1;SAF=0;SAP=291.816;SAR=133;SRF=0;SRP=263.587;SRR=120;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:141:53,88:53:2050:88:3384:-262.196,0,-142.246 0/1:50:33,17:33:1299:17:625:-41.5194,0,-102.129 0/1:62:34,28:34:1314:28:1105:-81.0776,0,-99.8541 dDocent_Contig_1240 86 . C A 2303.41 . AB=0.469484;ABP=4.73321;AC=3;AF=0.5;AN=6;AO=100;CIGAR=1X;DP=213;DPB=213;DPRA=0;EPP=220.158;EPPR=248.387;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=0.982301;PAO=0;PQA=0;PQR=0;PRO=0;QA=3323;QR=3802;RO=113;RPL=100;RPP=220.158;RPPR=248.387;RPR=0;RUN=1;SAF=100;SAP=220.158;SAR=0;SRF=113;SRP=248.387;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:156:84,72:84:2853:72:2372:-166.78,0,-210.057 0/1:18:8,10:8:263:10:348:-26.2374,0,-18.5719 0/1:39:21,18:21:686:18:603:-42.846,0,-50.3052 dDocent_Contig_1242 7 . T C 82.051 . AB=0.0588235;ABP=232.931;AC=1;AF=0.166667;AN=6;AO=16;CIGAR=1X1M3I4M;DP=309;DPB=317.5;DPRA=0;EPP=37.7539;EPPR=584.965;GTI=0;LEN=1;MEANALT=3;MQM=59.875;MQMR=60;NS=3;NUMALT=3;ODDS=2.77556e-17;PAIRED=1;PAIREDR=1;PAO=0.75;PQA=0;PQR=0;PRO=0.75;QA=610;QR=10413;RO=268;RPL=0;RPP=37.7539;RPPR=584.965;RPR=16;RUN=1;SAF=16;SAP=37.7539;SAR=0;SRF=268;SRP=584.965;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|0:173:161,8,0,4:161:6239:8,0,4:306,0,163:0,-23.374,-533.488,-48.4658,-535.897,-561.005,-35.0102,-522.449,-547.557,-546.353 0|1:43:32,6,0,5:32:1248:6,0,5:226,0,169:-8.90655,0,-100.822,-18.5395,-102.628,-121.146,-4.86883,-88.9468,-107.463,-105.958 0|0:93:75,2,8,5:75:2926:2,8,5:78,309,196:-2.79902,-18.9644,-258.883,0,-234.107,-238.11,-9.25882,-243.369,-224.402,-248.275 dDocent_Contig_1244 63 . G C 1926.88 . AB=0.220982;ABP=305.95;AC=3;AF=0.5;AN=6;AO=99;CIGAR=1X;DP=448;DPB=448;DPRA=0;EPP=217.986;EPPR=758.683;GTI=0;LEN=1;MEANALT=1.33333;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=3691;QR=12939;RO=348;RPL=99;RPP=217.986;RPPR=758.683;RPR=0;RUN=1;SAF=99;SAP=217.986;SAR=0;SRF=348;SRP=758.683;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:232:179,52:179:6707:52:1987:-109.239,0,-533.729 0/1:93:74,19:74:2793:19:697:-35.0575,0,-223.559 0/1:123:95,28:95:3439:28:1007:-53.9147,0,-272.681 dDocent_Contig_1245 12 . G A 3518.5 . AB=0.732026;ABP=74.5553;AC=3;AF=0.5;AN=6;AO=112;CIGAR=1X1M;DP=153;DPB=153;DPRA=0;EPP=246.215;EPPR=81.1833;GTI=0;LEN=1;MEANALT=2;MQM=60;MQMR=60;NS=3;NUMALT=2;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=4453;QR=1435;RO=36;RPL=0;RPP=246.215;RPPR=81.1833;RPR=112;RUN=1;SAF=112;SAP=246.215;SAR=0;SRF=36;SRP=81.1833;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|1:89:19,0,69:19:752:0,69:0,2720:-218.025,-223.744,-285.633,0,-61.8751,-41.104 0|1:12:1,1,10:1:41:1,10:40,405:-33.0987,-30.1051,-33.1886,0,-0.0988881,-0.378725 0|1:52:16,3,33:16:642:3,33:122,1328:-104.622,-99.3744,-151.366,0,-42.8268,-42.9569 dDocent_Contig_1246 24 . T G 124.442 . AB=0.230769;ABP=19.3799;AC=1;AF=0.166667;AN=6;AO=6;CIGAR=1X;DP=66;DPB=66;DPRA=1.3;EPP=16.0391;EPPR=133.299;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=1.73472e-18;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=238;QR=2357;RO=60;RPL=0;RPP=16.0391;RPPR=133.299;RPR=6;RUN=1;SAF=6;SAP=16.0391;SAR=0;SRF=60;SRP=133.299;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:26:20,6:20:785:6:238:-13.9671,0,-63.1383 0/0:11:11,0:11:436:0:0:0,-3.31133,-39.5938 0/0:29:29,0:29:1136:0:0:0,-8.72987,-102.517 dDocent_Contig_1247 8 . T C 7677.49 . AB=0.823077;ABP=238.732;AC=4;AF=0.666667;AN=6;AO=248;CIGAR=1X;DP=296;DPB=296;DPRA=0;EPP=541.535;EPPR=107.241;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=1.38778e-17;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=9513;QR=1860;RO=48;RPL=0;RPP=541.535;RPPR=107.241;RPR=248;RUN=1;SAF=248;SAP=541.535;SAR=0;SRF=48;SRP=107.241;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:183:39,144:39:1509:144:5503:-440.165,0,-80.9942 1/1:36:2,34:2:78:34:1314:-111.143,-3.43361,0 0/1:77:7,70:7:273:70:2696:-219.647,0,-1.7587 dDocent_Contig_1248 80 . G T 2696.61 . AB=0.805085;ABP=98.4079;AC=3;AF=0.5;AN=6;AO=95;CIGAR=1X;DP=118;DPB=118;DPRA=0;EPP=209.3;EPPR=52.9542;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=3442;QR=810;RO=23;RPL=95;RPP=209.3;RPPR=52.9542;RPR=0;RUN=1;SAF=95;SAP=209.3;SAR=0;SRF=23;SRP=52.9542;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:50:8,42:8:290:42:1531:-123.027,0,-11.3966 0/1:29:4,25:4:141:25:899:-72.5,0,-4.30723 0/1:39:11,28:11:379:28:1012:-79.6554,0,-22.7004 dDocent_Contig_1249 88 . G T 52.4187 . AB=0.2;ABP=14.7363;AC=1;AF=0.166667;AN=6;AO=3;CIGAR=1X;DP=64;DPB=64;DPRA=0.612245;EPP=9.52472;EPPR=135.47;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=121;QR=2134;RO=61;RPL=3;RPP=9.52472;RPPR=135.47;RPR=0;RUN=1;SAF=3;SAP=9.52472;SAR=0;SRF=61;SRP=135.47;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:15:12,3:12:428:3:121:-6.76475,0,-34.3436 0/0:20:20,0:20:703:0:0:0,-6.0206,-63.5943 0/0:29:29,0:29:1003:0:0:0,-8.72987,-90.5817 dDocent_Contig_1250 10 . A T 484.892 . AB=0.367347;ABP=10.4997;AC=1;AF=0.166667;AN=6;AO=19;CIGAR=1X;DP=88;DPB=88;DPRA=3.9;EPP=44.2683;EPPR=152.842;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=3.46945e-18;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=757;QR=2607;RO=69;RPL=0;RPP=44.2683;RPPR=152.842;RPR=19;RUN=1;SAF=19;SAP=44.2683;SAR=0;SRF=69;SRP=152.842;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:49:31,18:31:1168:18:716:-50.0121,0,-90.6664 0/0:10:10,0:10:365:0:0:0,-3.0103,-33.1929 0/0:29:28,1:28:1074:1:41:0,-4.6353,-92.8656 dDocent_Contig_1251 8 . C A 189.333 . AB=0.257143;ABP=20.9405;AC=2;AF=0.333333;AN=6;AO=9;CIGAR=1X;DP=40;DPB=40;DPRA=3.5;EPP=22.5536;EPPR=70.3259;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=351;QR=1197;RO=31;RPL=0;RPP=22.5536;RPPR=70.3259;RPR=9;RUN=1;SAF=9;SAP=22.5536;SAR=0;SRF=31;SRP=70.3259;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:15:8,7:8:312:7:273:-20.4226,0,-23.9295 0/0:5:5,0:5:195:0:0:0,-1.50515,-17.9242 0/1:20:18,2:18:690:2:78:-1.38287,0,-56.4121 dDocent_Contig_1252 15 . G A 15213.8 . AB=0.502994;ABP=3.08832;AC=4;AF=0.666667;AN=6;AO=504;CIGAR=3M1X;DP=1002;DPB=1002;DPRA=0;EPP=1097.43;EPPR=270.101;GTI=0;LEN=1;MEANALT=11;MQM=58.2579;MQMR=60;NS=3;NUMALT=4;ODDS=0;PAIRED=0.990079;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=19410;QR=4868;RO=123;RPL=0;RPP=1097.43;RPPR=270.101;RPR=504;RUN=1;SAF=504;SAP=1097.43;SAR=0;SRF=123;SRP=270.101;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|1:548:66,60,63,28,268:66:2607:60,63,28,268:2361,2532,1099,10378:-804.608,-655.604,-852.061,-626.979,-672.627,-822.534,-741.441,-787.089,-758.464,-947.532,0,-45.655,-17.0255,-131.489,-133.847 1|1:125:10,15,8,6,77:10:389:15,8,6,77:583,302,228,2934:-250.414,-208.348,-235.798,-229.489,-216.378,-259.047,-235.261,-222.15,-243.291,-265.421,-13.1063,0,-21.1407,-26.9124,-21.8968 0|1:329:47,39,27,16,159:47:1872:39,27,16,159:1516,1072,621,6098:-471.886,-388.455,-530.867,-402.398,-458.972,-548.423,-439.108,-495.681,-509.625,-588.444,0,-56.5886,-70.523,-107.234,-106.296 dDocent_Contig_1253 11 . G A 10687 . AB=0.50237;ABP=3.03088;AC=6;AF=1;AN=6;AO=212;CIGAR=1X3M;DP=422;DPB=422;DPRA=0;EPP=463.362;EPPR=61.6401;GTI=0;LEN=1;MEANALT=4;MQM=59.967;MQMR=60;NS=3;NUMALT=3;ODDS=0;PAIRED=0.995283;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=8524;QR=1055;RO=27;RPL=0;RPP=463.362;RPPR=61.6401;RPR=212;RUN=1;SAF=212;SAP=463.362;SAR=0;SRF=27;SRP=61.6401;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 1|1:233:16,9,69,136:16:624:9,69,136:360,2652,5453:-608.614,-596.093,-644.671,-398.001,-431.953,-428.516,-164.167,-198.127,0,-174.518 1|1:30:0,2,16,12:0:0:2,16,12:79,536,484:-81.9686,-78.2627,-77.6606,-40.0351,-36.3446,-35.2186,-42.0383,-38.334,0,-38.4259 1|1:159:11,7,68,64:11:431:7,68,64:274,2580,2587:-383.639,-370.282,-403.616,-177.865,-196.641,-192.836,-173.654,-192.431,0,-189.832 dDocent_Contig_1254 18 . G C 7107.44 . AB=0.298429;ABP=137.823;AC=4;AF=0.666666;AN=6;AO=114;CIGAR=1M4D4M2X;DP=382;DPB=252.545;DPRA=0;EPP=250.558;EPPR=59.4686;GTI=0;LEN=1;MEANALT=4.33333;MQM=59.9649;MQMR=60;NS=3;NUMALT=3;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=4268;QR=1024;RO=26;RPL=0;RPP=250.558;RPPR=59.4686;RPR=114;RUN=1;SAF=114;SAP=250.558;SAR=0;SRF=26;SRP=59.4686;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 1|0:214:14,70,58,68:14:546:70,58,68:2779,2205,2548:-388.361,-163.797,-187.607,-211.739,-27.839,-239.16,-183.898,0,-47.9463,-208.309 1|0:61:3,6,21,30:3:118:6,21,30:230,752,1111:-141.584,-123.61,-131.512,-81.1787,-72.0099,-84.5657,-51.5915,-42.4215,0,-52.2707 1|1:107:9,34,35,29:9:360:34,35,29:1352,1311,1082:-186.321,-77.7066,-97.1305,-81.6666,0,-100.788,-100.452,-18.786,-22.7519,-121.379 dDocent_Contig_1255 150 . G A 42475.1 . AB=0.0946387;ABP=3064.45;AC=2;AF=0.333333;AN=6;AO=203;CIGAR=2X2M;DP=2145;DPB=2145.5;DPRA=0;EPP=22.7889;EPPR=26.6552;GTI=0;LEN=1;MEANALT=12.3333;MQM=47.1379;MQMR=54.0556;NS=3;NUMALT=3;ODDS=2.22045e-16;PAIRED=0.768473;PAIREDR=0.796296;PAO=0;PQA=0;PQR=0;PRO=0;QA=6929;QR=5844;RO=162;RPL=126;RPP=28.6936;RPPR=24.4569;RPR=77;RUN=1;SAF=3;SAP=418.147;SAR=200;SRF=5;SRP=312.7;SRR=157;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|0:1046:99,68,80,740:99:3543:68,80,740:2424,2641,24628:-1871.56,-1752.48,-2016.02,-1696.96,-1832.09,-1956.88,0,-135.155,-79.6179,-61.2603 1|0:540:33,26,48,402:33:1223:26,48,402:970,1782,14308:-1183.77,-1133.55,-1208.41,-1049.86,-1072.39,-1118.09,-61.181,-83.721,0,-22.8536 1|0:559:30,39,75,402:30:1078:39,75,402:1392,2506,14056:-1197.71,-1127.5,-1203.68,-1010,-1018.69,-1075.35,-108.822,-117.527,0,-75.739 dDocent_Contig_1257 122 . G A 1647.53 . AB=0.145743;ABP=1513.83;AC=2;AF=0.333333;AN=6;AO=319;CIGAR=1X;DP=2450;DPB=2450;DPRA=0;EPP=202.057;EPPR=584.954;GTI=0;LEN=1;MEANALT=2.33333;MQM=36.6207;MQMR=43.4203;NS=3;NUMALT=1;ODDS=0;PAIRED=0.77116;PAIREDR=0.622003;PAO=0;PQA=0;PQR=0;PRO=0;QA=12354;QR=79784;RO=2127;RPL=241;RPP=183.869;RPPR=487.657;RPR=78;RUN=1;SAF=4;SAP=661.402;SAR=315;SRF=33;SRP=4339.54;SRR=2094;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:1064:946,117:946:35382:117:4547:0,-12.7687,-2427.22 0/1:681:582,98:582:21772:98:3721:-83.7995,0,-1440.29 0/1:705:599,104:599:22630:104:4086:-84.4765,0,-1469.03 dDocent_Contig_1258 42 . G A 514.123 . AB=0.35;ABP=14.7363;AC=3;AF=0.5;AN=6;AO=21;CIGAR=1X;DP=60;DPB=60;DPRA=0;EPP=48.6112;EPPR=87.6977;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=821;QR=1505;RO=39;RPL=0;RPP=48.6112;RPPR=87.6977;RPR=21;RUN=1;SAF=21;SAP=48.6112;SAR=0;SRF=39;SRP=87.6977;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:24:13,11:13:513:11:424:-31.2869,0,-39.2897 0/1:23:18,5:18:681:5:202:-11.6384,0,-54.6878 0/1:13:8,5:8:311:5:195:-14.01,0,-24.4378 dDocent_Contig_1261 15 . C T 113.376 . AB=0.357143;ABP=5.49198;AC=1;AF=0.166667;AN=6;AO=5;CIGAR=2X;DP=31;DPB=31;DPRA=1.64706;EPP=13.8677;EPPR=59.4686;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=189;QR=996;RO=26;RPL=0;RPP=13.8677;RPPR=59.4686;RPR=5;RUN=1;SAF=5;SAP=13.8677;SAR=0;SRF=26;SRP=59.4686;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|0:10:10,0:10:380:0:0:0,-3.0103,-34.5469 0|0:7:7,0:7:271:0:0:0,-2.10721,-24.7538 0|1:14:9,5:9:345:5:189:-13.1615,0,-27.1872 dDocent_Contig_1263 18 . G A 105.023 . AB=0.159091;ABP=47.4268;AC=1;AF=0.166667;AN=6;AO=11;CIGAR=1X;DP=150;DPB=150;DPRA=0;EPP=26.8965;EPPR=304.845;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=443;QR=5556;RO=139;RPL=0;RPP=26.8965;RPPR=304.845;RPR=11;RUN=1;SAF=11;SAP=26.8965;SAR=0;SRF=139;SRP=304.845;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:83:80,3:80:3209:3:122:0,-13.613,-277.502 0/0:23:22,1:22:877:1:41:0,-2.82912,-75.1414 0/1:44:37,7:37:1470:7:280:-12.3262,0,-119.305 dDocent_Contig_1264 50 . T C 4784.55 . AB=0.859649;ABP=195.128;AC=3;AF=0.5;AN=6;AO=147;CIGAR=1X;DP=171;DPB=171;DPRA=0;EPP=322.217;EPPR=55.1256;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=5927;QR=974;RO=24;RPL=147;RPP=322.217;RPPR=55.1256;RPR=0;RUN=1;SAF=147;SAP=322.217;SAR=0;SRF=24;SRP=55.1256;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:89:14,75:14:567:75:3034:-246.331,0,-24.5806 0/1:36:3,33:3:122:33:1328:-108.941,0,-0.535412 0/1:46:7,39:7:285:39:1565:-127.236,0,-12.177 dDocent_Contig_1265 20 . A C 41.5465 . AB=0.0933333;ABP=218.478;AC=1;AF=0.166667;AN=6;AO=19;CIGAR=1X;DP=243;DPB=243;DPRA=5.02273;EPP=44.2683;EPPR=489.42;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=758;QR=8995;RO=224;RPL=0;RPP=44.2683;RPPR=489.42;RPR=19;RUN=1;SAF=19;SAP=44.2683;SAR=0;SRF=224;SRP=489.42;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:150:136,14:136:5485:14:561:-5.6775,0,-448.304 0/0:22:22,0:22:888:0:0:0,-6.62266,-80.2259 0/0:71:66,5:66:2622:5:197:0,-3.26834,-217.993 dDocent_Contig_1266 91 . G A 81.0691 . AB=0.230769;ABP=19.3799;AC=2;AF=0.333333;AN=6;AO=7;CIGAR=1X;DP=47;DPB=47;DPRA=0;EPP=18.2106;EPPR=89.8692;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=244;QR=1357;RO=40;RPL=7;RPP=18.2106;RPPR=89.8692;RPR=0;RUN=1;SAF=7;SAP=18.2106;SAR=0;SRF=40;SRP=89.8692;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:16:14,2:14:477:2:70:-1.83092,0,-38.4395 0/0:21:20,1:20:674:1:35:0,-2.823,-57.4782 0/1:10:6,4:6:206:4:139:-9.84239,0,-15.8664 dDocent_Contig_1267 7 . T C 8078.77 . AB=0.353468;ABP=169.742;AC=3;AF=0.5;AN=6;AO=316;CIGAR=1X;DP=894;DPB=894;DPRA=0;EPP=689.196;EPPR=1255.95;GTI=0;LEN=1;MEANALT=1.33333;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=0.982669;PAO=0;PQA=0;PQR=0;PRO=0;QA=12026;QR=21947;RO=577;RPL=0;RPP=689.196;RPPR=1255.95;RPR=316;RUN=1;SAF=316;SAP=689.196;SAR=0;SRF=577;SRP=1255.95;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:540:334,205:334:12741:205:7816:-540.603,0,-983.503 0/1:104:70,34:70:2680:34:1309:-86.792,0,-210.084 0/1:250:173,77:173:6526:77:2901:-186.005,0,-511.993 dDocent_Contig_1268 27 . C A 5330.53 . AB=0.443099;ABP=14.6248;AC=3;AF=0.5;AN=6;AO=183;CIGAR=1X;DP=413;DPB=413;DPRA=0;EPP=400.39;EPPR=502.449;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=7361;QR=9211;RO=230;RPL=0;RPP=400.39;RPPR=502.449;RPR=183;RUN=1;SAF=183;SAP=400.39;SAR=0;SRF=230;SRP=502.449;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:257:147,110:147:5880:110:4419:-320.269,0,-451.6 0/1:51:30,21:30:1212:21:844:-60.9214,0,-93.9995 0/1:105:53,52:53:2119:52:2098:-157.385,0,-159.264 dDocent_Contig_1269 18 . C T 1681.97 . AB=0.280992;ABP=103.831;AC=3;AF=0.5;AN=6;AO=68;CIGAR=1X;DP=242;DPB=242;DPRA=0;EPP=150.67;EPPR=365.646;GTI=0;LEN=1;MEANALT=2;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=2719;QR=6734;RO=167;RPL=0;RPP=150.67;RPPR=365.646;RPR=68;RUN=1;SAF=68;SAP=150.67;SAR=0;SRF=167;SRP=365.646;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:110:87,19:87:3501:19:754:-35.8672,0,-282.799 0/1:41:24,15:24:966:15:610:-43.0971,0,-75.0999 0/1:91:56,34:56:2267:34:1355:-94.7556,0,-176.729 dDocent_Contig_1270 42 . T C 542.273 . AB=0.323529;ABP=21.4039;AC=3;AF=0.5;AN=6;AO=22;CIGAR=1X;DP=68;DPB=68;DPRA=0;EPP=50.7827;EPPR=102.898;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=879;QR=1818;RO=46;RPL=0;RPP=50.7827;RPPR=102.898;RPR=22;RUN=1;SAF=22;SAP=50.7827;SAR=0;SRF=46;SRP=102.898;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:39:30,9:30:1193:9:356:-20.6603,0,-95.9055 0/1:11:8,3:8:306:3:121:-7.96887,0,-24.5833 0/1:18:8,10:8:319:10:402:-31.121,0,-23.6557 dDocent_Contig_1271 17 . T A 2248.4 . AB=0.5;ABP=3.0103;AC=3;AF=0.5;AN=6;AO=77;CIGAR=1X;DP=154;DPB=154;DPRA=0;EPP=170.214;EPPR=170.214;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=3065;QR=3088;RO=77;RPL=0;RPP=170.214;RPPR=170.214;RPR=77;RUN=1;SAF=77;SAP=170.214;SAR=0;SRF=77;SRP=170.214;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:91:44,47:44:1754:47:1873:-141.382,0,-130.68 0/1:17:4,13:4:161:13:507:-40.8492,0,-9.75776 0/1:46:29,17:29:1173:17:685:-48.1317,0,-91.9973 dDocent_Contig_1272 121 . G A 1080.17 . AB=0.0515464;ABP=172.452;AC=0;AF=0;AN=6;AO=5;CIGAR=1X1M1X;DP=149;DPB=149;DPRA=0.932692;EPP=13.8677;EPPR=204.957;GTI=0;LEN=1;MEANALT=2;MQM=37.2;MQMR=60;NS=3;NUMALT=3;ODDS=0;PAIRED=0.6;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=182;QR=3306;RO=93;RPL=0;RPP=13.8677;RPPR=204.957;RPR=5;RUN=1;SAF=0;SAP=13.8677;SAR=5;SRF=0;SRP=204.957;SRR=93;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|0:75:32,3,40,0:32:1153:3,40,0:106,1403,0:-104.538,-105.552,-198.738,0,-85.4731,-82.0503,-114.171,-199.641,-94.0915,-208.26 0|0:22:16,2,4,0:16:555:2,4,0:76,143,0:-7.0018,-10.3413,-54.8419,0,-43.7819,-44.1087,-11.8183,-55.444,-45.3128,-56.9793 0|0:52:45,0,4,3:45:1598:0,4,3:0,141,103:0,-13.5463,-143.752,-2.06057,-132.272,-131.068,-5.18655,-135.389,-123.909,-134.486 dDocent_Contig_1273 1 . N G 76.8682 . AB=0;ABP=0;AC=2;AF=1;AN=2;AO=2;CIGAR=1X;DP=2;DPB=2;DPRA=0;EPP=7.35324;EPPR=0;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=0;NS=1;NUMALT=1;ODDS=5.99146;PAIRED=1;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=81;QR=0;RO=0;RPL=0;RPP=7.35324;RPPR=0;RPR=2;RUN=1;SAF=2;SAP=7.35324;SAR=0;SRF=0;SRP=0;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 1/1:2:0,2:0:0:2:81:-7.68573,-0.60206,0 ./.:.:.:.:.:.:.:. ./.:.:.:.:.:.:.:. dDocent_Contig_1274 14 . G C 267.096 . AB=0.0789474;ABP=471.134;AC=1;AF=0.166667;AN=6;AO=24;CIGAR=1X3M1X1M1X;DP=304;DPB=304;DPRA=0;EPP=55.1256;EPPR=498.106;GTI=0;LEN=1;MEANALT=3.33333;MQM=60;MQMR=60;NS=3;NUMALT=3;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=931;QR=8621;RO=228;RPL=0;RPP=55.1256;RPPR=498.106;RPR=24;RUN=1;SAF=24;SAP=55.1256;SAR=0;SRF=228;SRP=498.106;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|0:123:90,9,11,12:90:3415:9,11,12:346,404,452:-9.94608,-8.63235,-285.944,-4.027,-255.638,-280.731,0,-251.615,-247.004,-276.406 0|0:75:54,5,5,11:54:2050:5,5,11:198,185,393:-15.7727,-15.723,-182.336,-16.8941,-168.708,-183.501,0,-151.803,-152.968,-164.79 0|1:106:84,10,7,5:84:3156:10,7,5:387,255,181:-6.51371,0,-255.539,-10.978,-237.723,-267.407,-17.0278,-243.774,-254.739,-274.059 dDocent_Contig_1275 33 . C T 97.1764 . AB=0.152174;ABP=51.3492;AC=1;AF=0.166667;AN=6;AO=13;CIGAR=1X;DP=176;DPB=176;DPRA=0;EPP=31.2394;EPPR=356.96;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=517;QR=6464;RO=163;RPL=0;RPP=31.2394;RPPR=356.96;RPR=13;RUN=1;SAF=13;SAP=31.2394;SAR=0;SRF=163;SRP=356.96;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:85:80,5:80:3169:5:198:0,-7.39105,-267.088 0/1:46:39,7:39:1522:7:278:-11.5415,0,-123.366 0/0:45:44,1:44:1773:1:41:0,-9.45178,-155.688 dDocent_Contig_1278 16 . G T 57.3518 . AB=0.166667;ABP=26.1727;AC=1;AF=0.166667;AN=6;AO=4;CIGAR=1X;DP=113;DPB=113;DPRA=0.539326;EPP=11.6962;EPPR=239.701;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=0.422018;PAO=0;PQA=0;PQR=0;PRO=0;QA=160;QR=4291;RO=109;RPL=0;RPP=11.6962;RPPR=239.701;RPR=4;RUN=1;SAF=4;SAP=11.6962;SAR=0;SRF=109;SRP=239.701;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:70:70,0:70:2759:0:0:0,-21.0721,-248.447 0/1:24:20,4:20:791:4:160:-7.55908,0,-64.2875 0/0:19:19,0:19:741:0:0:0,-5.71957,-67.0171 dDocent_Contig_1281 21 . C A 40.6925 . AB=0.290323;ABP=14.8483;AC=2;AF=0.333333;AN=6;AO=9;CIGAR=1X1M1X;DP=37;DPB=37;DPRA=2.58333;EPP=22.5536;EPPR=63.8115;GTI=0;LEN=1;MEANALT=1;MQM=20.4444;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=0;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=352;QR=1120;RO=28;RPL=0;RPP=22.5536;RPPR=63.8115;RPR=9;RUN=1;SAF=9;SAP=22.5536;SAR=0;SRF=28;SRP=63.8115;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|1:23:17,6:17:680:6:233:-4.0396,0,-54.6074 0|1:8:5,3:5:200:3:119:-3.54707,0,-15.9717 0|0:6:6,0:6:240:0:0:0,-1.80618,-21.9751 dDocent_Contig_1282 18 . C T 777.692 . AB=0.100144;ABP=1930.58;AC=2;AF=0.333333;AN=6;AO=246;CIGAR=1X;DP=2652;DPB=2652;DPRA=0;EPP=537.193;EPPR=5199.34;GTI=0;LEN=1;MEANALT=2.66667;MQM=59.4146;MQMR=55.5495;NS=3;NUMALT=1;ODDS=0;PAIRED=0.987805;PAIREDR=0.993732;PAO=0;PQA=0;PQR=0;PRO=0;QA=9765;QR=94808;RO=2393;RPL=0;RPP=537.193;RPPR=5199.34;RPR=246;RUN=1;SAF=246;SAP=537.193;SAR=0;SRF=2393;SRP=5199.34;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:1264:1153,107:1153:45759:107:4244:0,-5.21253,-3417.43 0/1:713:642,67:642:25333:67:2637:-23.7281,0,-2013.51 0/1:675:598,72:598:23716:72:2884:-57.564,0,-1790.91 dDocent_Contig_1283 29 . A C 396.158 . AB=0.208791;ABP=70.0396;AC=2;AF=0.333333;AN=6;AO=19;CIGAR=1X;DP=99;DPB=99;DPRA=5.6875;EPP=44.2683;EPPR=176.728;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=6.93889e-18;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=766;QR=3161;RO=80;RPL=0;RPP=44.2683;RPPR=176.728;RPR=19;RUN=1;SAF=19;SAP=44.2683;SAR=0;SRF=80;SRP=176.728;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:69:52,17:52:2068:17:684:-41.1183,0,-165.532 0/0:8:8,0:8:309:0:0:0,-2.40824,-28.1683 0/1:22:20,2:20:784:2:82:-1.15702,0,-64.2496 dDocent_Contig_1284 13 . G A 4535.69 . AB=0.734694;ABP=96.7825;AC=3;AF=0.5;AN=6;AO=144;CIGAR=1X4M;DP=196;DPB=196;DPRA=0;EPP=315.702;EPPR=107.241;GTI=0;LEN=1;MEANALT=1.33333;MQM=60;MQMR=60;NS=3;NUMALT=2;ODDS=1.38778e-17;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=5741;QR=1890;RO=48;RPL=0;RPP=315.702;RPPR=107.241;RPR=144;RUN=1;SAF=144;SAP=315.702;SAR=0;SRF=48;SRP=107.241;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|1:75:11,0,64:11:437:0,64:0,2562:-208.134,-211.446,-247.423,0,-36.3743,-17.1084 0|1:65:11,4,50:11:421:4,50:159,1981:-159.724,-149.944,-183.276,0,-21.4327,-19.4759 0|1:56:26,0,30:26:1032:0,30:0,1198:-91.2342,-99.061,-184.017,0,-85.3536,-76.3227 dDocent_Contig_1285 12 . A G 3210.4 . AB=0.753521;ABP=82.2843;AC=3;AF=0.5;AN=6;AO=107;CIGAR=1X2M1X;DP=142;DPB=142;DPRA=0;EPP=235.358;EPPR=79.0118;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=4094;QR=1353;RO=35;RPL=0;RPP=235.358;RPPR=79.0118;RPR=107;RUN=1;SAF=107;SAP=235.358;SAR=0;SRF=35;SRP=79.0118;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|1:77:25,52:25:958:52:2002:-157.23,0,-63.3449 0|1:39:7,32:7:274:32:1218:-98.1771,0,-13.2858 0|1:26:3,23:3:121:23:874:-71.1509,0,-3.45342 dDocent_Contig_1286 13 . A G 81.9852 . AB=0.121212;ABP=85.263;AC=1;AF=0.166667;AN=6;AO=9;CIGAR=1X;DP=134;DPB=134;DPRA=0.84;EPP=22.5536;EPPR=274.444;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=369;QR=5009;RO=125;RPL=0;RPP=22.5536;RPPR=274.444;RPR=9;RUN=1;SAF=9;SAP=22.5536;SAR=0;SRF=125;SRP=274.444;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:50:50,0:50:2010:0:0:0,-15.0515,-181.087 0/0:18:17,1:17:690:1:41:0,-1.32397,-58.3345 0/1:66:58,8:58:2309:8:328:-10.0224,0,-188.101 dDocent_Contig_1287 167 . C A 240.68 . AB=0.183333;ABP=55.2704;AC=1;AF=0.166667;AN=6;AO=11;CIGAR=1X1M3X;DP=60;DPB=60;DPRA=0;EPP=26.8965;EPPR=85.5263;GTI=0;LEN=1;MEANALT=2.33333;MQM=60;MQMR=60;NS=3;NUMALT=2;ODDS=0;PAIRED=0;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=353;QR=1269;RO=38;RPL=11;RPP=26.8965;RPPR=85.5263;RPR=0;RUN=1;SAF=0;SAP=26.8965;SAR=11;SRF=0;SRP=85.5263;SRR=38;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|0:21:14,5,2:14:479:5,2:170,68:-9.57538,0,-37.3774,-8.27388,-33.3669,-46.5541 0|0:23:15,4,3:15:499:4,3:132,81:-6.17694,0,-39.2102,-4.33087,-34.0389,-43.8074 0|1:16:9,1,6:9:291:1,6:34,204:-13.8386,-13.7898,-36.9524,0,-20.699,-21.6524 dDocent_Contig_1288 60 . C T 60.2141 . AB=0.162162;ABP=39.6906;AC=2;AF=0.333333;AN=6;AO=6;CIGAR=1X;DP=45;DPB=45;DPRA=2.3125;EPP=16.0391;EPPR=85.5263;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=204;QR=1496;RO=38;RPL=6;RPP=16.0391;RPPR=85.5263;RPR=0;RUN=1;SAF=6;SAP=16.0391;SAR=0;SRF=38;SRP=85.5263;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:21:17,4:17:679:4:150:-7.54132,0,-55.1199 0/1:16:14,2:14:543:2:54:-0.312802,0,-44.3952 0/0:8:7,0:7:274:0:0:0,-2.10721,-24.8118 dDocent_Contig_1289 7 . T C 108.531 . AB=0.333333;ABP=6.62942;AC=1;AF=0.166667;AN=6;AO=7;CIGAR=1X;DP=86;DPB=86;DPRA=0.575;EPP=18.2106;EPPR=174.557;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=263;QR=3024;RO=79;RPL=0;RPP=18.2106;RPPR=174.557;RPR=7;RUN=1;SAF=7;SAP=18.2106;SAR=0;SRF=79;SRP=174.557;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:40:40,0:40:1528:0:0:0,-12.0412,-137.793 0/1:15:10,5:10:381:5:187:-12.677,0,-30.1291 0/0:31:29,2:29:1115:2:76:0,-2.11726,-93.4389 dDocent_Contig_1290 20 . T G 3911.94 . AB=0.581395;ABP=15.3826;AC=5;AF=0.833333;AN=6;AO=125;CIGAR=1X7M;DP=215;DPB=211.125;DPRA=0;EPP=274.444;EPPR=128.956;GTI=0;LEN=1;MEANALT=2.66667;MQM=60;MQMR=60;NS=3;NUMALT=2;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=4988;QR=2297;RO=58;RPL=0;RPP=274.444;RPPR=128.956;RPR=125;RUN=1;SAF=125;SAP=274.444;SAR=0;SRF=58;SRP=128.956;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|1:114:36,7,70:36:1429:7,70:279,2782:-218.177,-206.039,-321.569,0,-94.6608,-96.5647 1|1:32:5,6,21:5:197:6,21:229,842:-70.4443,-53.1665,-67.5668,-2.56716,0,-12.4589 1|1:69:17,17,34:17:671:17,34:680,1364:-108.073,-57.177,-107.27,-0.806348,0,-45.782 dDocent_Contig_1291 98 . N A 60.7946 . AB=0;ABP=0;AC=2;AF=1;AN=2;AO=2;CIGAR=1X;DP=2;DPB=2;DPRA=0;EPP=7.35324;EPPR=0;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=0;NS=1;NUMALT=1;ODDS=5.99146;PAIRED=1;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=64;QR=0;RO=0;RPL=2;RPP=7.35324;RPPR=0;RPR=0;RUN=1;SAF=2;SAP=7.35324;SAR=0;SRF=0;SRP=0;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 1/1:2:0,2:0:0:2:64:-6.07837,-0.60206,0 ./.:.:.:.:.:.:.:. ./.:.:.:.:.:.:.:. dDocent_Contig_1292 11 . T A 4579.99 . AB=0.765714;ABP=110.331;AC=5;AF=0.833333;AN=6;AO=134;CIGAR=1X2M;DP=175;DPB=175;DPRA=0;EPP=293.988;EPPR=46.4397;GTI=0;LEN=1;MEANALT=2.33333;MQM=60;MQMR=60;NS=3;NUMALT=2;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=5375;QR=781;RO=20;RPL=0;RPP=293.988;RPPR=46.4397;RPR=134;RUN=1;SAF=134;SAP=293.988;SAR=0;SRF=20;SRP=46.4397;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 1|1:84:8,12,64:8:316:12,64:488,2590:-225.405,-187.56,-209.947,-14.2638,0,-20.9938 0|1:41:9,1,30:9:343:1,30:41,1201:-96.2949,-95.6196,-123.444,0,-24.7905,-19.1477 1|1:50:3,7,40:3:122:7,40:273,1584:-141.822,-120.287,-128.244,-12.359,0,-10.3861 dDocent_Contig_1293 58 . T C 175.385 . AB=0.144231;ABP=117.347;AC=2;AF=0.333333;AN=6;AO=16;CIGAR=1X;DP=122;DPB=122;DPRA=0;EPP=37.7539;EPPR=233.186;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=614;QR=4229;RO=106;RPL=16;RPP=37.7539;RPPR=233.186;RPR=0;RUN=1;SAF=16;SAP=37.7539;SAR=0;SRF=106;SRP=233.186;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:77:66,11:66:2630:11:426:-15.5133,0,-213.645 0/0:18:17,1:17:684:1:40:0,-1.42286,-57.8936 0/1:27:23,4:23:915:4:148:-5.54798,0,-74.5252 dDocent_Contig_1294 8 . C T 343.395 . AB=0.178862;ABP=113.19;AC=2;AF=0.333333;AN=6;AO=23;CIGAR=1X;DP=165;DPB=165;DPRA=0;EPP=52.9542;EPPR=311.359;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=6.93889e-18;PAIRED=1;PAIREDR=0.605634;PAO=0;PQA=0;PQR=0;PRO=0;QA=861;QR=5412;RO=142;RPL=0;RPP=52.9542;RPPR=311.359;RPR=23;RUN=1;SAF=23;SAP=52.9542;SAR=0;SRF=142;SRP=311.359;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:85:67,18:67:2577:18:672:-35.2177,0,-206.533 0/0:42:41,1:41:1546:1:37:0,-8.94543,-135.713 0/1:38:34,4:34:1289:4:152:-2.61049,0,-104.861 dDocent_Contig_1295 16 . T C 305.669 . AB=0.137931;ABP=201.138;AC=2;AF=0.333333;AN=6;AO=41;CIGAR=1X;DP=392;DPB=392;DPRA=0;EPP=92.0407;EPPR=765.197;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=1616;QR=13430;RO=351;RPL=0;RPP=92.0407;RPPR=765.197;RPR=41;RUN=1;SAF=41;SAP=92.0407;SAR=0;SRF=351;SRP=765.197;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:218:201,17:201:7685:17:663:0,-5.63093,-631.421 0/1:57:47,10:47:1795:10:401:-19.2903,0,-144.623 0/1:117:103,14:103:3950:14:552:-14.7995,0,-320.35 dDocent_Contig_1296 7 . T C 19064.1 . AB=0;ABP=0;AC=6;AF=1;AN=6;AO=574;CIGAR=3X;DP=637;DPB=637;DPRA=0;EPP=1249.44;EPPR=37.7539;GTI=0;LEN=1;MEANALT=4;MQM=59.9443;MQMR=60;NS=3;NUMALT=2;ODDS=0;PAIRED=0.961672;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=21807;QR=613;RO=16;RPL=0;RPP=1249.44;RPPR=37.7539;RPR=574;RUN=1;SAF=574;SAP=1249.44;SAR=0;SRF=16;SRP=37.7539;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 1|1:302:6,19,274:6:231:19,274:735,10426:-916.637,-858.175,-871.423,-63.5153,-22.2148,0 1|1:165:8,6,148:8:306:6,148:230,5603:-476.379,-459.909,-483.214,-19.4355,-25.6703,0 1|1:170:2,13,152:2:76:13,152:506,5778:-512.792,-471.936,-474.256,-39.5239,-4.28623,0 dDocent_Contig_1297 36 . A G 235.096 . AB=0.133333;ABP=178.176;AC=2;AF=0.333333;AN=6;AO=20;CIGAR=1X;DP=169;DPB=169;DPRA=3.94737;EPP=46.4397;EPPR=326.56;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=794;QR=5929;RO=149;RPL=0;RPP=46.4397;RPPR=326.56;RPR=20;RUN=1;SAF=20;SAP=46.4397;SAR=0;SRF=149;SRP=326.56;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:111:95,16:95:3816:16:634:-23.9768,0,-310.024 0/0:19:19,0:19:713:0:0:0,-5.71957,-64.4775 0/1:39:35,4:35:1400:4:160:-3.04275,0,-114.515 dDocent_Contig_1298 54 . T G 221.899 . AB=0.314286;ABP=13.4954;AC=2;AF=0.333333;AN=6;AO=11;CIGAR=1X;DP=45;DPB=45;DPRA=1.75;EPP=26.8965;EPPR=76.8404;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=395;QR=1359;RO=34;RPL=11;RPP=26.8965;RPPR=76.8404;RPR=0;RUN=1;SAF=11;SAP=26.8965;SAR=0;SRF=34;SRP=76.8404;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:19:12,7:12:479:7:233:-15.5623,0,-37.74 0/0:10:10,0:10:396:0:0:0,-3.0103,-35.9968 0/1:16:12,4:12:484:4:162:-10.1505,0,-39.0926 dDocent_Contig_1299 10 . G C 466.658 . AB=0.241758;ABP=55.7222;AC=3;AF=0.5;AN=6;AO=22;CIGAR=1X;DP=91;DPB=91;DPRA=0;EPP=50.7827;EPPR=152.842;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=872;QR=2703;RO=69;RPL=0;RPP=50.7827;RPPR=152.842;RPR=22;RUN=1;SAF=22;SAP=50.7827;SAR=0;SRF=69;SRP=152.842;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:29:20,9:20:782:9:348:-22.9424,0,-61.961 0/1:32:25,7:25:963:7:281:-16.0296,0,-77.3367 0/1:30:24,6:24:958:6:243:-13.2167,0,-77.4887 dDocent_Contig_1300 66 . G A 718.283 . AB=0.520833;ABP=3.19126;AC=2;AF=0.333333;AN=6;AO=25;CIGAR=1X;DP=54;DPB=54;DPRA=4;EPP=57.2971;EPPR=65.983;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=990;QR=1132;RO=29;RPL=25;RPP=57.2971;RPPR=65.983;RPR=0;RUN=1;SAF=25;SAP=57.2971;SAR=0;SRF=29;SRP=65.983;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:36:15,21:15:601:21:828:-63.9966,0,-43.5916 0/0:6:6,0:6:238:0:0:0,-1.80618,-21.7936 0/1:12:8,4:8:293:4:162:-11.3546,0,-23.1065 dDocent_Contig_1301 24 . T C 365.713 . AB=0.133929;ABP=263.742;AC=3;AF=0.5;AN=6;AO=30;CIGAR=1X;DP=224;DPB=224;DPRA=0;EPP=68.1545;EPPR=424.276;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=1205;QR=7622;RO=194;RPL=0;RPP=68.1545;RPPR=424.276;RPR=30;RUN=1;SAF=30;SAP=68.1545;SAR=0;SRF=194;SRP=424.276;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:114:102,12:102:4006:12:486:-9.77364,0,-326.216 0/1:33:24,9:24:935:9:363:-23.1005,0,-74.5188 0/1:77:68,9:68:2681:9:356:-9.22005,0,-218.227 dDocent_Contig_1302 1 . N A 94.7629 . AB=0;ABP=0;AC=2;AF=1;AN=2;AO=3;CIGAR=1X;DP=3;DPB=3;DPRA=0;EPP=9.52472;EPPR=0;GTI=0;LEN=1;MEANALT=1;MQM=48.3333;MQMR=0;NS=1;NUMALT=1;ODDS=6.68461;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=102;QR=0;RO=0;RPL=0;RPP=9.52472;RPPR=0;RPR=3;RUN=1;SAF=0;SAP=9.52472;SAR=3;SRF=0;SRP=0;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 1/1:3:0,3:0:0:3:102:-9.47575,-0.90309,0 ./.:.:.:.:.:.:.:. ./.:.:.:.:.:.:.:. dDocent_Contig_1303 87 . G A 238.652 . AB=0.254902;ABP=29.6215;AC=1;AF=0.166667;AN=6;AO=13;CIGAR=1X;DP=80;DPB=80;DPRA=3.51724;EPP=31.2394;EPPR=148.499;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=449;QR=2288;RO=67;RPL=13;RPP=31.2394;RPPR=148.499;RPR=0;RUN=1;SAF=13;SAP=31.2394;SAR=0;SRF=67;SRP=148.499;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:51:38,13:38:1297:13:449:-25.3881,0,-101.679 0/0:8:8,0:8:278:0:0:0,-2.40824,-25.358 0/0:21:21,0:21:713:0:0:0,-6.32163,-64.4865 dDocent_Contig_1304 39 . T A 168.252 . AB=0.216216;ABP=28.8919;AC=2;AF=0.333333;AN=6;AO=8;CIGAR=1X;DP=50;DPB=50;DPRA=1.42308;EPP=20.3821;EPPR=94.2121;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=0.75;PAIREDR=0.833333;PAO=0;PQA=0;PQR=0;PRO=0;QA=320;QR=1688;RO=42;RPL=0;RPP=20.3821;RPPR=94.2121;RPR=8;RUN=1;SAF=8;SAP=20.3821;SAR=0;SRF=42;SRP=94.2121;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:24:17,7:17:679:7:280:-18.3463,0,-54.2104 0/1:13:12,1:12:484:1:40:-0.0822893,0,-39.9982 0/0:13:13,0:13:525:0:0:0,-3.91339,-47.5976 dDocent_Contig_1306 21 . T A 2104.31 . AB=0.369668;ABP=34.1416;AC=3;AF=0.5;AN=6;AO=78;CIGAR=1X;DP=211;DPB=211;DPRA=0;EPP=172.385;EPPR=289.645;GTI=0;LEN=1;MEANALT=1.33333;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=3093;QR=5299;RO=132;RPL=0;RPP=172.385;RPPR=289.645;RPR=78;RUN=1;SAF=78;SAP=172.385;SAR=0;SRF=132;SRP=289.645;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:124:77,46:77:3085:46:1806:-125.642,0,-240.611 0/1:24:18,6:18:727:6:243:-15.0232,0,-58.53 0/1:63:37,26:37:1487:26:1044:-75.2884,0,-115.111 dDocent_Contig_1308 44 . C T 2081.01 . AB=0.795181;ABP=65.826;AC=3;AF=0.5;AN=6;AO=66;CIGAR=1X;DP=83;DPB=83;DPRA=0;EPP=121.454;EPPR=39.9253;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=0.954545;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=2641;QR=672;RO=17;RPL=0;RPP=146.327;RPPR=39.9253;RPR=66;RUN=1;SAF=63;SAP=121.454;SAR=3;SRF=17;SRP=39.9253;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:51:9,42:9:346:42:1692:-137.15,0,-16.1392 0/1:12:2,10:2:82:10:397:-32.475,0,-4.16732 0/1:20:6,14:6:244:14:552:-43.9985,0,-16.3182 dDocent_Contig_1309 48 . G A 5586.61 . AB=0.0576923;ABP=91.3725;AC=0;AF=0;AN=6;AO=4;CIGAR=1X3M1X;DP=186;DPB=186;DPRA=0;EPP=11.6962;EPPR=33.4109;GTI=0;LEN=1;MEANALT=2.5;MQM=60;MQMR=60;NS=3;NUMALT=2;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=156;QR=544;RO=14;RPL=4;RPP=11.6962;RPPR=33.4109;RPR=0;RUN=1;SAF=4;SAP=11.6962;SAR=0;SRF=14;SRP=33.4109;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|0:97:0,1,94:0:0:1,94:39,3702:-332.811,-329.605,-329.304,-28.2968,-25.0862,0 0|0:37:5,0,32:5:189:0,32:0,1232:-100.015,-101.52,-117.011,0,-15.8697,-6.23677 0|0:52:9,3,40:9:355:3,40:117,1603:-129.358,-122.451,-150.754,0,-19.5946,-17.1695 dDocent_Contig_1311 15 . T C 496.334 . AB=0.20155;ABP=102.814;AC=3;AF=0.5;AN=6;AO=26;CIGAR=1X6M;DP=129;DPB=129;DPRA=0;EPP=59.4686;EPPR=202.786;GTI=0;LEN=1;MEANALT=2.33333;MQM=60;MQMR=60;NS=3;NUMALT=3;ODDS=1.38778e-17;PAIRED=0.961538;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=1004;QR=3650;RO=92;RPL=0;RPP=59.4686;RPPR=202.786;RPR=26;RUN=1;SAF=26;SAP=59.4686;SAR=0;SRF=92;SRP=202.786;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|1:80:64,5,4,7:64:2547:5,4,7:194,157,273:-3.17523,-6.50203,-214.722,-9.52827,-203.315,-218.05,0,-193.786,-196.814,-207.618 0|1:20:7,1,1,11:7:274:1,1,11:39,38,425:-32.8009,-31.7019,-53.9313,-31.7921,-51.1163,-54.0212,0,-19.3275,-19.4181,-19.2221 0|1:29:21,0,0,8:21:829:0,0,8:0,0,306:-19.1706,-25.4922,-93.714,-25.4922,-93.714,-93.714,0,-68.6074,-68.6074,-66.1991 dDocent_Contig_1312 83 . C T 4001.06 . AB=0.653061;ABP=52.8655;AC=3;AF=0.5;AN=6;AO=160;CIGAR=1M1X3M;DP=245;DPB=239;DPRA=0;EPP=350.446;EPPR=165.871;GTI=0;LEN=1;MEANALT=1.33333;MQM=60;MQMR=60;NS=3;NUMALT=2;ODDS=0;PAIRED=0.99375;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=5287;QR=2574;RO=75;RPL=160;RPP=350.446;RPPR=165.871;RPR=0;RUN=1;SAF=160;SAP=350.446;SAR=0;SRF=75;SRP=165.871;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|1:155:45,10,100:45:1554:10,100:340,3299:-253.148,-239.113,-362.37,0,-98.6878,-96.1636 0|1:24:3,0,21:3:104:0,21:0,709:-56.9011,-57.8041,-66.2587,0,-8.8,-2.47837 0|1:66:27,0,39:27:916:0,39:0,1279:-95.5345,-103.662,-177.949,0,-74.6216,-62.8814 dDocent_Contig_1313 25 . C T 8312.58 . AB=0.074184;ABP=533.758;AC=1;AF=0.166667;AN=6;AO=25;CIGAR=1X2M1I2M;DP=337;DPB=397.6;DPRA=0;EPP=57.2971;EPPR=76.8404;GTI=0;LEN=1;MEANALT=3;MQM=60;MQMR=60;NS=3;NUMALT=2;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=980;QR=1328;RO=34;RPL=0;RPP=57.2971;RPPR=76.8404;RPR=25;RUN=1;SAF=25;SAP=57.2971;SAR=0;SRF=34;SRP=76.8404;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|0:147:14,7,117:14:548:7,117:263,4532:-368.016,-350.692,-393.64,0,-23.5217,-9.83704 0|0:76:8,6,61:8:315:6,61:242,2362:-191.606,-174.064,-198.172,0,-5.95859,-7.55131 1|0:114:12,12,90:12:465:12,90:475,3414:-277.141,-241.658,-276.243,-0.905337,0,-12.0055 dDocent_Contig_1314 11 . C T 4048.61 . AB=0.536;ABP=5.82453;AC=3;AF=0.5;AN=6;AO=134;CIGAR=1X;DP=250;DPB=250;DPRA=0;EPP=293.988;EPPR=254.901;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=1.38778e-17;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=5389;QR=4546;RO=116;RPL=0;RPP=293.988;RPPR=254.901;RPR=134;RUN=1;SAF=134;SAP=293.988;SAR=0;SRF=116;SRP=254.901;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:132:62,70:62:2433:70:2806:-212.908,0,-179.382 0/1:47:14,33:14:527:33:1326:-105.454,0,-33.6035 0/1:71:40,31:40:1586:31:1257:-92.0226,0,-121.602 dDocent_Contig_1315 12 . T A 327.541 . AB=0.202247;ABP=71.5459;AC=2;AF=0.333333;AN=6;AO=21;CIGAR=1X;DP=152;DPB=152;DPRA=0;EPP=48.6112;EPPR=287.473;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=0;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=806;QR=4932;RO=131;RPL=0;RPP=48.6112;RPPR=287.473;RPR=21;RUN=1;SAF=21;SAP=48.6112;SAR=0;SRF=131;SRP=287.473;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:52:44,8:44:1671:8:312:-12.7847,0,-134.994 0/1:37:27,10:27:984:10:381:-23.4922,0,-77.7165 0/0:63:60,3:60:2277:3:113:0,-8.42797,-194.607 dDocent_Contig_1322 7 . A G 3402.06 . AB=0.379052;ABP=53.9614;AC=3;AF=0.5;AN=6;AO=152;CIGAR=1X4M;DP=401;DPB=408.2;DPRA=0;EPP=333.074;EPPR=287.473;GTI=0;LEN=1;MEANALT=10.3333;MQM=49.6776;MQMR=45.3969;NS=3;NUMALT=4;ODDS=5.55112e-17;PAIRED=0.559211;PAIREDR=0.770992;PAO=0;PQA=0;PQR=0;PRO=0;QA=4897;QR=5021;RO=131;RPL=0;RPP=333.074;RPPR=287.473;RPR=152;RUN=1;SAF=152;SAP=333.074;SAR=0;SRF=131;SRP=287.473;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|1:151:67,15,11,39,2:67:2577:15,11,39,2:381,386,1185,10:-72.9336,-65.1999,-251.377,-73.7588,-236.549,-261.139,0,-162.818,-171.376,-178.977,-93.2179,-256.006,-264.564,-190.832,-283.306 0|1:127:30,10,1,63,4:30:1139:10,1,63,4:247,39,2132,48:-158.415,-149.504,-234.168,-166.939,-236.671,-254.312,0,-69.7886,-87.2225,-68.7632,-165.22,-234.952,-252.386,-85.5062,-251.689 0|1:123:34,7,1,50,17:34:1305:7,1,50,17:92,37,1580,330:-114.38,-120.242,-212.358,-124.109,-213.958,-218.033,0,-89.8984,-93.7622,-79.2166,-102.592,-192.442,-196.309,-72.2523,-191.698 dDocent_Contig_1325 8 . C G 838.8 . AB=0.265957;ABP=47.7334;AC=2;AF=0.333333;AN=6;AO=25;CIGAR=1X1M2I6M1X;DP=94;DPB=104.444;DPRA=0;EPP=57.2971;EPPR=96.3836;GTI=0;LEN=1;MEANALT=3.33333;MQM=60;MQMR=60;NS=3;NUMALT=2;ODDS=1.38778e-17;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=960;QR=1688;RO=43;RPL=0;RPP=57.2971;RPPR=96.3836;RPR=25;RUN=1;SAF=25;SAP=57.2971;SAR=0;SRF=43;SRP=96.3836;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|1:69:31,23,10:31:1210:23,10:884,386:-63.2413,0,-92.547,-40.8722,-67.7709,-137.332 0|1:6:5,1,0:5:199:1,0:36,0:-1.79209,0,-16.4828,-3.29724,-16.7838,-19.7149 0|0:19:7,1,8:7:279:1,8:40,318:-24.08,-22.8917,-45.5686,0,-19.6862,-20.5735 dDocent_Contig_1326 86 . G A 287.918 . AB=0.239437;ABP=44.88;AC=2;AF=0.333333;AN=6;AO=17;CIGAR=1X;DP=83;DPB=83;DPRA=2.95833;EPP=39.9253;EPPR=146.327;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=0.954545;PAO=0;PQA=0;PQR=0;PRO=0;QA=589;QR=2198;RO=66;RPL=17;RPP=39.9253;RPPR=146.327;RPR=0;RUN=1;SAF=17;SAP=39.9253;SAR=0;SRF=66;SRP=146.327;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:51:37,14:37:1210:14:484:-28.5367,0,-93.8413 0/1:20:17,3:17:583:3:105:-3.77556,0,-46.774 0/0:12:12,0:12:405:0:0:0,-3.61236,-36.7754 dDocent_Contig_1327 11 . C A 5533.48 . AB=0.471464;ABP=5.86069;AC=3;AF=0.5;AN=6;AO=190;CIGAR=1X;DP=403;DPB=403;DPRA=0;EPP=415.59;EPPR=463.362;GTI=0;LEN=1;MEANALT=1.33333;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=7554;QR=8507;RO=212;RPL=0;RPP=415.59;RPPR=463.362;RPR=190;RUN=1;SAF=190;SAP=415.59;SAR=0;SRF=212;SRP=463.362;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:194:96,97:96:3866:97:3868:-289.616,0,-289.428 0/1:76:43,33:43:1710:33:1313:-95.5591,0,-131.244 0/1:133:73,60:73:2931:60:2373:-173.696,0,-223.844 dDocent_Contig_1329 8 . C G 4368.53 . AB=0.6621;ABP=52.9938;AC=3;AF=0.5;AN=6;AO=145;CIGAR=1X1M1X;DP=219;DPB=219;DPRA=0;EPP=317.874;EPPR=92.0407;GTI=0;LEN=1;MEANALT=2;MQM=60;MQMR=60;NS=3;NUMALT=3;ODDS=0;PAIRED=0.793103;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=5538;QR=1575;RO=41;RPL=0;RPP=317.874;RPPR=92.0407;RPR=145;RUN=1;SAF=145;SAP=317.874;SAR=0;SRF=41;SRP=92.0407;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|1:163:26,105,14,18:26:1000:105,14,18:4012,555,727:-321.344,0,-50.4836,-283.484,-36.4058,-361.369,-269.235,-22.1549,-305.648,-345.916 0|1:14:5,9,0,0:5:191:9,0,0:347,0,0:-27.3754,0,-13.344,-28.8805,-16.0533,-44.5508,-28.8805,-16.0533,-44.5508,-44.5508 0|1:42:10,31,0,1:10:384:31,0,1:1179,0,41:-93.6571,0,-22.1665,-96.6674,-31.4984,-128.19,-93.2824,-28.112,-124.805,-124.504 dDocent_Contig_1330 156 . T C 2061.92 . AB=0.482143;ABP=3.32051;AC=4;AF=0.666667;AN=6;AO=70;CIGAR=1X;DP=128;DPB=128;DPRA=0;EPP=155.013;EPPR=128.956;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=2695;QR=2291;RO=58;RPL=0;RPP=155.013;RPPR=128.956;RPR=70;RUN=1;SAF=0;SAP=155.013;SAR=70;SRF=0;SRP=128.956;SRR=58;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:91:52,39:52:2049:39:1523:-109.916,0,-157.216 1/1:16:0,16:0:0:16:631:-57.1268,-4.81648,0 0/1:21:6,15:6:242:15:541:-42.6723,0,-15.8359 dDocent_Contig_1333 85 . C T 1327.36 . AB=0.478261;ABP=3.48236;AC=3;AF=0.5;AN=6;AO=55;CIGAR=2X;DP=115;DPB=115;DPRA=0;EPP=122.441;EPPR=133.299;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=1910;QR=1928;RO=60;RPL=55;RPP=122.441;RPPR=133.299;RPR=0;RUN=1;SAF=55;SAP=122.441;SAR=0;SRF=0;SRP=133.299;SRR=60;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|1:54:27,27:27:872:27:940:-68.6604,0,-62.5257 0|1:39:21,18:21:661:18:621:-44.4746,0,-48.0504 0|1:22:12,10:12:395:10:349:-25.1241,0,-29.2471 dDocent_Contig_1334 14 . A T 379.27 . AB=0.394737;ABP=6.66752;AC=1;AF=0.166667;AN=6;AO=16;CIGAR=2X;DP=90;DPB=90;DPRA=4;EPP=37.7539;EPPR=163.699;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=604;QR=2910;RO=74;RPL=0;RPP=37.7539;RPPR=163.699;RPR=16;RUN=1;SAF=16;SAP=37.7539;SAR=0;SRF=74;SRP=163.699;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|0:42:41,1:41:1628:1:39:0,-8.74669,-142.863 0|0:10:10,0:10:385:0:0:0,-3.0103,-35.0029 0|1:38:23,15:23:897:15:565:-39.7509,0,-69.5967 dDocent_Contig_1335 22 . T C 928.532 . AB=0.070922;ABP=228.489;AC=0;AF=0;AN=6;AO=10;CIGAR=1X3M1X1M1X1M;DP=170;DPB=166.5;DPRA=0;EPP=24.725;EPPR=187.585;GTI=0;LEN=1;MEANALT=5;MQM=60;MQMR=60;NS=3;NUMALT=5;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=392;QR=3279;RO=85;RPL=0;RPP=24.725;RPPR=187.585;RPR=10;RUN=1;SAF=10;SAP=24.725;SAR=0;SRF=85;SRP=187.585;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|0:88:47,9,5,9,1,17:47:1821:9,5,9,1,17:352,200,360,41,686:-42.4044,-27.616,-174.494,-40.0778,-160.727,-188.161,-26.8978,-147.547,-160.011,-173.777,-53.1685,-173.819,-186.282,-173.102,-202.457,0,-120.65,-133.114,-119.933,-146.205,-144.472 0|0:29:10,0,0,10,4,5:10:395:0,0,10,4,5:0,0,402,162,182:-30.1283,-33.1386,-65.6439,-33.1386,-65.6439,-65.6439,0,-32.5112,-32.5112,-29.5009,-19.777,-52.2837,-52.2837,-19.1486,-51.0796,-18.2859,-50.7871,-50.7871,-17.6572,-37.4277,-49.2819 0|0:53:28,1,1,9,3,11:28:1063:1,1,9,3,11:40,40,334,119,418:-25.8434,-30.9763,-117.834,-30.9763,-114.839,-117.834,-6.95629,-90.8152,-90.8152,-91.4014,-24.4749,-108.338,-108.338,-84.3144,-110.731,0,-83.8619,-83.8619,-59.8388,-77.3611,-83.8462 dDocent_Contig_1336 9 . A C 212.057 . AB=0.27027;ABP=19.9713;AC=2;AF=0.333333;AN=6;AO=11;CIGAR=1X;DP=80;DPB=80;DPRA=0;EPP=26.8965;EPPR=152.842;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=3.46945e-18;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=429;QR=2670;RO=69;RPL=0;RPP=26.8965;RPPR=152.842;RPR=11;RUN=1;SAF=11;SAP=26.8965;SAR=0;SRF=69;SRP=152.842;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:43:42,1:42:1618:1:39:0,-9.04772,-141.989 0/1:15:13,2:13:507:2:78:-2.88802,0,-41.464 0/1:22:14,8:14:545:8:312:-21.8223,0,-42.7736 dDocent_Contig_1338 22 . G A 30.8498 . AB=0.666667;ABP=3.73412;AC=1;AF=0.5;AN=2;AO=2;CIGAR=2X1M1X;DP=3;DPB=3;DPRA=0;EPP=7.35324;EPPR=0;GTI=0;LEN=1;MEANALT=2;MQM=17;MQMR=0;NS=1;NUMALT=2;ODDS=3.00535;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=69;QR=0;RO=0;RPL=0;RPP=7.35324;RPPR=0;RPR=2;RUN=1;SAF=0;SAP=7.35324;SAR=2;SRF=0;SRP=0;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|1:3:0,1,2:0:0:1,2:39,69:-3.7475,-2.61359,-2.31256,-1.29685,0,-0.694793 .:.:.:.:.:.:.:. .:.:.:.:.:.:.:. dDocent_Contig_1341 16 . C T 73.0034 . AB=0.181818;ABP=32.0291;AC=1;AF=0.166667;AN=6;AO=6;CIGAR=1X;DP=140;DPB=140;DPRA=0.616822;EPP=16.0391;EPPR=293.988;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=208;QR=5369;RO=134;RPL=0;RPP=16.0391;RPPR=293.988;RPR=6;RUN=1;SAF=6;SAP=16.0391;SAR=0;SRF=134;SRP=293.988;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:54:54,0:54:2171:0:0:0,-16.2556,-195.56 0/0:53:53,0:53:2112:0:0:0,-15.9546,-190.254 0/1:33:27,6:27:1086:6:208:-9.12425,0,-88.091 dDocent_Contig_1343 8 . T C 1247.46 . AB=0.222222;ABP=196.03;AC=3;AF=0.5;AN=6;AO=64;CIGAR=1X;DP=288;DPB=288;DPRA=0;EPP=141.985;EPPR=489.42;GTI=0;LEN=1;MEANALT=1;MQM=53.7188;MQMR=60;NS=3;NUMALT=1;ODDS=1.38778e-17;PAIRED=1;PAIREDR=0.995536;PAO=0;PQA=0;PQR=0;PRO=0;QA=2459;QR=8580;RO=224;RPL=0;RPP=141.985;RPPR=489.42;RPR=64;RUN=1;SAF=64;SAP=141.985;SAR=0;SRF=224;SRP=489.42;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:169:129,40:129:4932:40:1545:-83.3573,0,-393.026 0/1:46:34,12:34:1298:12:446:-26.5242,0,-103.262 0/1:73:61,12:61:2350:12:468:-20.3875,0,-189.735 dDocent_Contig_1344 1 . N G 66.4848 . AB=0;ABP=0;AC=2;AF=1;AN=2;AO=2;CIGAR=1X;DP=2;DPB=2;DPRA=0;EPP=7.35324;EPPR=0;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=0;NS=1;NUMALT=1;ODDS=5.99146;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=70;QR=0;RO=0;RPL=0;RPP=7.35324;RPPR=0;RPR=2;RUN=1;SAF=0;SAP=7.35324;SAR=2;SRF=0;SRP=0;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 1/1:2:0,2:0:0:2:70:-6.6474,-0.60206,0 ./.:.:.:.:.:.:.:. ./.:.:.:.:.:.:.:. dDocent_Contig_1345 12 . T A 158.909 . AB=0.140351;ABP=67.0497;AC=1;AF=0.166667;AN=6;AO=8;CIGAR=1M2X;DP=153;DPB=156;DPRA=0.296875;EPP=20.3821;EPPR=291.816;GTI=0;LEN=1;MEANALT=3;MQM=46.5;MQMR=51.9474;NS=3;NUMALT=2;ODDS=0;PAIRED=1;PAIREDR=0.789474;PAO=0;PQA=0;PQR=0;PRO=0;QA=318;QR=5193;RO=133;RPL=0;RPP=20.3821;RPPR=291.816;RPR=8;RUN=1;SAF=8;SAP=20.3821;SAR=0;SRF=133;SRP=291.816;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|0:96:92,2,0:92:3604:2,0:82,0:0,-20.9266,-300.967,-27.6948,-301.569,-308.338 0|1:24:15,2,6:15:584:2,6:81,237:-13.9418,-11.7708,-53.6526,0,-35.7828,-40.6621 0|0:33:26,4,2:26:1005:4,2:161,81:-5.4719,0,-75.9254,-6.60954,-70.4471,-83.1195 dDocent_Contig_1347 16 . T C 221.392 . AB=0.118421;ABP=291.359;AC=3;AF=0.5;AN=6;AO=27;CIGAR=1X;DP=228;DPB=228;DPRA=0;EPP=61.6401;EPPR=439.476;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=1058;QR=7607;RO=201;RPL=0;RPP=61.6401;RPPR=439.476;RPR=27;RUN=1;SAF=27;SAP=61.6401;SAR=0;SRF=201;SRP=439.476;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:128:116,12:116:4407:12:475:-4.5682,0,-358.163 0/1:45:37,8:37:1382:8:312:-14.895,0,-111.108 0/1:55:48,7:48:1818:7:271:-8.19843,0,-147.308 dDocent_Contig_1349 11 . G A 1665.86 . AB=0.286385;ABP=87.4327;AC=3;AF=0.5;AN=6;AO=61;CIGAR=1X1M;DP=213;DPB=213;DPRA=0;EPP=135.47;EPPR=291.816;GTI=0;LEN=1;MEANALT=2;MQM=60;MQMR=60;NS=3;NUMALT=2;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=2453;QR=5287;RO=133;RPL=0;RPP=135.47;RPPR=291.816;RPR=61;RUN=1;SAF=61;SAP=135.47;SAR=0;SRF=133;SRP=291.816;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|1:88:49,6,33:49:1950:6,33:240,1339:-95.6823,-90.6642,-249.405,0,-140.78,-150.616 0|1:51:36,9,6:36:1439:9,6:356,235:-18.4628,0,-115.828,-9.9776,-99.2143,-126.705 0|1:74:48,4,22:48:1898:4,22:152,879:-57.9638,-59.9528,-214.917,0,-143.723,-149.562 dDocent_Contig_1351 20 . C T 1943.14 . AB=0.0898876;ABP=133.03;AC=1;AF=0.166667;AN=6;AO=8;CIGAR=5M1X1M;DP=89;DPB=98.1429;DPRA=0;EPP=20.3821;EPPR=39.9253;GTI=0;LEN=1;MEANALT=2.33333;MQM=60;MQMR=60;NS=3;NUMALT=2;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=324;QR=660;RO=17;RPL=0;RPP=20.3821;RPPR=39.9253;RPR=8;RUN=1;SAF=8;SAP=20.3821;SAR=0;SRF=17;SRP=39.9253;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|0:48:7,36,4:7:267:36,4:1426,163:-115.288,0,-11.0726,-103.946,-8.4453,-124.639 0|1:13:1,10,2:1:40:10,2:384,79:-34.4065,-3.20054,-3.48697,-28.2051,0,-30.8995 0|0:28:9,17,2:9:353:17,2:645,82:-50.1371,0,-23.8986,-46.075,-22.2448,-74.5079 dDocent_Contig_1352 69 . T C 83.5821 . AB=0.4;ABP=4.74748;AC=1;AF=0.166667;AN=6;AO=10;CIGAR=1X;DP=41;DPB=41;DPRA=2.91667;EPP=24.725;EPPR=70.3259;GTI=0;LEN=1;MEANALT=1;MQM=22;MQMR=43.2903;NS=3;NUMALT=1;ODDS=0;PAIRED=0;PAIREDR=0.548387;PAO=0;PQA=0;PQR=0;PRO=0;QA=347;QR=1090;RO=31;RPL=10;RPP=24.725;RPPR=70.3259;RPR=0;RUN=1;SAF=10;SAP=24.725;SAR=0;SRF=31;SRP=70.3259;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:20:12,8:12:421:8:279:-9.88048,0,-28.7791 0/0:6:6,0:6:216:0:0:0,-1.80618,-16.1621 0/0:15:13,2:13:453:2:68:0,-0.386846,-28.2473 dDocent_Contig_1353 41 . G A 204.79 . AB=0.0147059;ABP=142.112;AC=1;AF=0.166667;AN=6;AO=34;CIGAR=1X4M;DP=276;DPB=276;DPRA=0;EPP=76.8404;EPPR=312.924;GTI=0;LEN=1;MEANALT=1.66667;MQM=9.79412;MQMR=15.7883;NS=3;NUMALT=2;ODDS=0;PAIRED=0;PAIREDR=0.153153;PAO=0;PQA=0;PQR=0;PRO=0;QA=333;QR=8599;RO=222;RPL=0;RPP=76.8404;RPPR=312.924;RPR=34;RUN=1;SAF=34;SAP=76.8404;SAR=0;SRF=222;SRP=485.077;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|0:185:152,8,25:152:5902:8,25:315,261:0,-19.7653,-149.668,-36.2416,-142.329,-160.731 0|0:23:15,0,8:15:585:0,8:0,63:0,-4.51545,-18.121,-3.0745,-16.761,-14.3527 0|1:68:55,12,1:55:2112:12,1:469,9:-22.3029,0,-35.996,-38.6213,-39.3458,-77.6514 dDocent_Contig_1354 17 . T C 1500.9 . AB=0.100671;ABP=209.388;AC=1;AF=0.166667;AN=6;AO=15;CIGAR=1X2M1X5M2X3M1X2M;DP=169;DPB=169;DPRA=0;EPP=35.5824;EPPR=150.67;GTI=0;LEN=1;MEANALT=4.5;MQM=60;MQMR=60;NS=3;NUMALT=5;ODDS=2.77556e-17;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=589;QR=2584;RO=68;RPL=0;RPP=35.5824;RPPR=150.67;RPR=15;RUN=1;SAF=15;SAP=35.5824;SAR=0;SRF=68;SRP=150.67;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|0:104:42,9,9,3,39,0:42:1598:9,9,3,39,0:352,352,119,1396,0:-94.1567,-77.8533,-206.213,-77.8524,-179.978,-206.212,-97.6455,-199.768,-199.767,-227.808,0,-102.109,-102.108,-121.898,-119.311,-106.8,-208.922,-208.921,-228.711,-131.051,-237.865 1|0:20:2,3,0,0,13,2:2:76:3,0,0,13,2:111,0,0,477,81:-38.8894,-30.4103,-35.7426,-39.4914,-36.6457,-45.7262,-39.4914,-36.6457,-45.7262,-45.7262,-2.83766,0,-9.06904,-9.06904,-5.15565,-32.8064,-29.9603,-39.042,-39.042,-2.38107,-38.44 0|0:45:24,0,6,5,10,0:24:910:0,6,5,10,0:0,237,175,384,0:-22.566,-29.7908,-104.408,-10.2762,-84.9018,-83.0957,-16.4346,-91.0462,-71.5405,-89.5411,0,-74.619,-55.1121,-61.2594,-71.6087,-29.7908,-104.408,-84.9018,-91.0462,-74.619,-104.408 dDocent_Contig_1355 8 . T C 247.762 . AB=0.389831;ABP=15.4503;AC=3;AF=0.5;AN=6;AO=46;CIGAR=1X;DP=118;DPB=118;DPRA=0;EPP=102.898;EPPR=159.356;GTI=0;LEN=1;MEANALT=1;MQM=16.6522;MQMR=60;NS=3;NUMALT=1;ODDS=6.93889e-18;PAIRED=0.0869565;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=1766;QR=2787;RO=72;RPL=0;RPP=102.898;RPPR=159.356;RPR=46;RUN=1;SAF=46;SAP=102.898;SAR=0;SRF=72;SRP=159.356;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:68:37,31:37:1436:31:1209:-24.9986,0,-109.047 0/1:7:3,4:3:117:4:156:-3.2522,0,-8.80317 0/1:43:32,11:32:1234:11:401:-1.47241,0,-98.4077 dDocent_Contig_1356 31 . T C 2781.42 . AB=0.646552;ABP=24.6501;AC=4;AF=0.666667;AN=6;AO=89;CIGAR=1X;DP=131;DPB=131;DPRA=0;EPP=196.271;EPPR=94.2121;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=3554;QR=1677;RO=42;RPL=0;RPP=196.271;RPPR=94.2121;RPR=89;RUN=1;SAF=89;SAP=196.271;SAR=0;SRF=42;SRP=94.2121;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:77:26,51:26:1044:51:2030:-159.705,0,-71.0701 1/1:15:1,14:1:41:14:554:-46.1035,-0.420883,0 0/1:39:15,24:15:592:24:970:-75.8563,0,-41.8742 dDocent_Contig_1357 98 . N A 197.972 . AB=0;ABP=0;AC=4;AF=1;AN=4;AO=8;CIGAR=1X;DP=8;DPB=8;DPRA=0;EPP=20.3821;EPPR=0;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=0;NS=2;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=211;QR=0;RO=0;RPL=8;RPP=20.3821;RPPR=0;RPR=0;RUN=1;SAF=8;SAP=20.3821;SAR=0;SRF=0;SRP=0;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 1/1:5:0,5:0:0:5:144:-13.2439,-1.50515,0 ./.:.:.:.:.:.:.:. 1/1:3:0,3:0:0:3:67:-6.25192,-0.90309,0 dDocent_Contig_1358 26 . C G 556.006 . AB=0.272727;ABP=42.4916;AC=1;AF=0.166667;AN=6;AO=46;CIGAR=1X;DP=385;DPB=385;DPRA=0;EPP=102.898;EPPR=739.139;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=1776;QR=13512;RO=339;RPL=0;RPP=102.898;RPPR=739.139;RPR=46;RUN=1;SAF=46;SAP=102.898;SAR=0;SRF=339;SRP=739.139;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:188:172,16:172:6861:16:608:0,-1.54387,-562.131 0/0:109:103,6:103:4105:6:239:0,-10.9278,-347.535 0/1:88:64,24:64:2546:24:929:-57.4245,0,-202.79 dDocent_Contig_1361 16 . G A 80.6758 . AB=0.0540541;ABP=258.657;AC=1;AF=0.166667;AN=6;AO=9;CIGAR=6M1X2M;DP=194;DPB=184.556;DPRA=0;EPP=22.5536;EPPR=367.818;GTI=0;LEN=1;MEANALT=2.33333;MQM=60;MQMR=60;NS=3;NUMALT=3;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=366;QR=6654;RO=168;RPL=0;RPP=22.5536;RPPR=367.818;RPR=9;RUN=1;SAF=9;SAP=22.5536;SAR=0;SRF=168;SRP=367.818;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|0:94:82,9,1,2:82:3243:9,1,2:348,38,82:-3.88639,0,-264.177,-25.4552,-263.769,-292.048,-21.7987,-260.117,-285.581,-288.095 0|0:46:45,0,0,1:45:1778:0,0,1:0,0,41:0,-13.5463,-159.845,-13.5463,-159.845,-159.845,-9.75281,-156.46,-156.46,-156.159 0|1:54:41,4,3,6:41:1633:4,3,6:156,116,243:-7.70219,-7.22378,-140.49,-10.519,-132.166,-144.086,0,-121.656,-124.951,-132.672 dDocent_Contig_1362 10 . A T 736.034 . AB=0.0762712;ABP=187.033;AC=0;AF=0;AN=6;AO=11;CIGAR=1X3M1X;DP=146;DPB=146;DPRA=0;EPP=26.8965;EPPR=226.672;GTI=0;LEN=1;MEANALT=2;MQM=60;MQMR=60;NS=3;NUMALT=2;ODDS=0;PAIRED=1;PAIREDR=0.941748;PAO=0;PQA=0;PQR=0;PRO=0;QA=436;QR=4088;RO=103;RPL=0;RPP=26.8965;RPPR=226.672;RPR=11;RUN=1;SAF=11;SAP=26.8965;SAR=0;SRF=103;SRP=226.672;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|0:82:51,8,23:51:2038:8,23:314,905:-59.0879,-48.617,-214.076,0,-142.046,-160.945 0|0:28:25,2,1:25:987:2,1:81,38:0,-0.830064,-81.4568,-4.4175,-78.9429,-85.3218 0|0:36:27,1,8:27:1063:1,8:41,318:-18.0382,-22.7805,-109.919,0,-84.0417,-85.0181 dDocent_Contig_1363 11 . C A 31.4448 . AB=0.125;ABP=51.8684;AC=2;AF=0.333333;AN=6;AO=5;CIGAR=1M2I1M1X;DP=54;DPB=57.3333;DPRA=1.42857;EPP=13.8677;EPPR=109.412;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=198;QR=1927;RO=49;RPL=0;RPP=13.8677;RPPR=109.412;RPR=5;RUN=1;SAF=5;SAP=13.8677;SAR=0;SRF=49;SRP=109.412;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|1:19:17,2:17:669:2:82:-2.06011,0,-54.8243 0|0:14:14,0:14:548:0:0:0,-4.21442,-49.6649 0|1:21:18,3:18:710:3:116:-4.49591,0,-57.9096 dDocent_Contig_1364 29 . T A 151.812 . AB=0.216216;ABP=28.8919;AC=2;AF=0.333333;AN=6;AO=11;CIGAR=1X;DP=90;DPB=90;DPRA=0;EPP=26.8965;EPPR=174.557;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=443;QR=3125;RO=79;RPL=0;RPP=26.8965;RPPR=174.557;RPR=11;RUN=1;SAF=11;SAP=26.8965;SAR=0;SRF=79;SRP=174.557;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:53:50,3:50:1976:3:120:0,-4.76669,-166.841 0/1:12:8,4:8:324:4:161:-11.2629,0,-25.917 0/1:25:21,4:21:825:4:162:-7.44121,0,-67.0341 dDocent_Contig_1365 14 . A T 8296.73 . AB=0.0857143;ABP=55.1877;AC=0;AF=0;AN=6;AO=5;CIGAR=1X1M1X1M1D1M;DP=308;DPB=212.833;DPRA=1.25;EPP=13.8677;EPPR=46.4397;GTI=0;LEN=1;MEANALT=3.5;MQM=12;MQMR=60;NS=3;NUMALT=2;ODDS=1.38778e-17;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=194;QR=792;RO=20;RPL=0;RPP=13.8677;RPPR=46.4397;RPR=5;RUN=1;SAF=5;SAP=13.8677;SAR=0;SRF=20;SRP=46.4397;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|0:185:8,2,171:8:318:2,171:79,6600:-513.909,-514.764,-540.346,-25.177,-49.9511,0 0|0:35:7,3,24:7:279:3,24:115,927:-66.8404,-66.6379,-88.7221,0,-20.8707,-15.9095 0|0:88:5,0,80:5:195:0,80:0,3064:-250.446,-251.951,-267.981,-7.94206,-24.0824,0 dDocent_Contig_1366 98 . N T 199.092 . AB=0;ABP=0;AC=6;AF=1;AN=6;AO=8;CIGAR=1X;DP=8;DPB=8;DPRA=0;EPP=20.3821;EPPR=0;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=0;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=206;QR=0;RO=0;RPL=8;RPP=20.3821;RPPR=0;RPR=0;RUN=1;SAF=8;SAP=20.3821;SAR=0;SRF=0;SRP=0;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 1/1:5:0,5:0:0:5:143:-13.1522,-1.50515,0 1/1:2:0,2:0:0:2:29:-2.75496,-0.60206,0 1/1:1:0,1:0:0:1:34:-3.39891,-0.30103,0 dDocent_Contig_1367 76 . T A 60.6837 . AB=0.162791;ABP=45.4803;AC=1;AF=0.166667;AN=6;AO=7;CIGAR=1X;DP=131;DPB=131;DPRA=0.977273;EPP=18.2106;EPPR=272.273;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=228;QR=4423;RO=124;RPL=7;RPP=18.2106;RPPR=272.273;RPR=0;RUN=1;SAF=7;SAP=18.2106;SAR=0;SRF=124;SRP=272.273;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:74:74,0:74:2653:0:0:0,-22.2762,-239.002 0/0:14:14,0:14:506:0:0:0,-4.21442,-45.8771 0/1:43:36,7:36:1264:7:228:-7.89228,0,-101.118 dDocent_Contig_1368 9 . T A 2167.23 . AB=0.35865;ABP=44.14;AC=3;AF=0.5;AN=6;AO=85;CIGAR=1X;DP=237;DPB=237;DPRA=0;EPP=187.585;EPPR=333.074;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=3252;QR=5872;RO=152;RPL=0;RPP=187.585;RPPR=333.074;RPR=85;RUN=1;SAF=85;SAP=187.585;SAR=0;SRF=152;SRP=333.074;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:152:96,56:96:3707:56:2143:-147.34,0,-287.982 0/1:24:13,11:13:502:11:416:-30.5651,0,-38.304 0/1:61:43,18:43:1663:18:693:-44.341,0,-131.568 dDocent_Contig_1369 60 . A G 1311.16 . AB=0.706897;ABP=24.5753;AC=4;AF=0.666667;AN=6;AO=47;CIGAR=1X;DP=64;DPB=64;DPRA=0;EPP=105.07;EPPR=39.9253;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=1680;QR=632;RO=17;RPL=47;RPP=105.07;RPPR=39.9253;RPR=0;RUN=1;SAF=47;SAP=105.07;SAR=0;SRF=17;SRP=39.9253;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:37:9,28:9:352:28:1047:-83.3807,0,-20.901 1/1:6:0,6:0:0:6:195:-17.8595,-1.80618,0 0/1:21:8,13:8:280:13:438:-33.3986,0,-19.2048 dDocent_Contig_1370 177 . T A 305.278 . AB=0.195652;ABP=77.0292;AC=3;AF=0.5;AN=6;AO=18;CIGAR=1X;DP=92;DPB=92;DPRA=0;EPP=42.0968;EPPR=163.699;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=59.5135;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=0.972973;PAO=0;PQA=0;PQR=0;PRO=0;QA=695;QR=2856;RO=74;RPL=18;RPP=42.0968;RPPR=163.699;RPR=0;RUN=1;SAF=0;SAP=42.0968;SAR=18;SRF=0;SRP=163.699;SRR=74;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:36:32,4:32:1250:4:139:-2.00717,0,-101.932 0/1:23:18,5:18:668:5:198:-11.2728,0,-53.1 0/1:33:24,9:24:938:9:358:-22.6476,0,-74.7955 dDocent_Contig_1371 28 . T A 157.911 . AB=0.131313;ABP=119.897;AC=1;AF=0.166667;AN=6;AO=22;CIGAR=1X;DP=411;DPB=411;DPRA=0;EPP=50.7827;EPPR=847.713;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=884;QR=15632;RO=389;RPL=0;RPP=50.7827;RPPR=847.713;RPR=22;RUN=1;SAF=22;SAP=50.7827;SAR=0;SRF=389;SRP=847.713;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:244:239,5:239:9608:5:202:0,-54.8892,-845.526 0/0:68:64,4:64:2576:4:159:0,-5.77771,-217.271 0/1:99:86,13:86:3448:13:523:-17.615,0,-280.548 dDocent_Contig_1372 47 . T G 4679.89 . AB=0.0506329;ABP=280.134;AC=0;AF=0;AN=6;AO=8;CIGAR=2X1M1X;DP=179;DPB=179;DPRA=0;EPP=20.3821;EPPR=50.7827;GTI=0;LEN=1;MEANALT=3;MQM=60;MQMR=60;NS=3;NUMALT=2;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=291;QR=829;RO=22;RPL=0;RPP=20.3821;RPPR=50.7827;RPR=8;RUN=1;SAF=8;SAP=20.3821;SAR=0;SRF=22;SRP=50.7827;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|0:104:10,4,88:10:369:4,88:153,3483:-283.621,-274.076,-303.047,0,-17.6081,-3.67478 0|0:21:4,0,17:4:152:0,17:0,671:-54.3983,-55.6024,-68.065,0,-12.8451,-7.72757 0|0:54:8,4,42:8:308:4,42:138,1674:-135.49,-126.694,-150.777,0,-14.1204,-12.6725 dDocent_Contig_1373 75 . A G 2221.17 . AB=0.0810811;ABP=59.4099;AC=0;AF=0;AN=6;AO=3;CIGAR=2X;DP=125;DPB=125;DPRA=0;EPP=9.52472;EPPR=87.6977;GTI=0;LEN=1;MEANALT=2;MQM=60;MQMR=60;NS=3;NUMALT=2;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=110;QR=1387;RO=39;RPL=3;RPP=9.52472;RPPR=87.6977;RPR=0;RUN=1;SAF=3;SAP=9.52472;SAR=0;SRF=39;SRP=87.6977;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|0:37:11,0,26:11:399:0,26:0,930:-72.8779,-76.1893,-108.77,0,-32.9422,-25.1154 0|0:37:10,3,24:10:374:3,24:110,868:-67.8383,-61.857,-91.5849,0,-21.6436,-23.4082 0|0:51:18,0,33:18:614:0,33:0,1133:-86.9235,-92.3421,-142.158,0,-50.1575,-40.2235 dDocent_Contig_1375 99 . N T 3051.06 . AB=0;ABP=0;AC=6;AF=1;AN=6;AO=90;CIGAR=5X3I5X9I2M;DP=92;DPB=184.583;DPRA=0;EPP=198.443;EPPR=0;GTI=0;LEN=1;MEANALT=1.66667;MQM=50.1889;MQMR=0;NS=3;NUMALT=1;ODDS=6.93889e-18;PAIRED=0.0555556;PAIREDR=0;PAO=8;PQA=232;PQR=0;PRO=0;QA=3413;QR=0;RO=0;RPL=0;RPP=198.443;RPPR=0;RPR=90;RUN=1;SAF=90;SAP=198.443;SAR=0;SRF=0;SRP=0;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 1|1:40:0,40:0:0:40:1512:-134.739,-12.0412,0 1|1:26:0,25:0:0:25:934:-83.3305,-7.52575,0 1|1:26:0,25:0:0:25:967:-86.4338,-7.52575,0 dDocent_Contig_1377 21 . T C 63.4817 . AB=0.2;ABP=22.5536;AC=1;AF=0.166667;AN=6;AO=7;CIGAR=1X2M1X;DP=59;DPB=59;DPRA=2.77778;EPP=18.2106;EPPR=109.412;GTI=0;LEN=1;MEANALT=1.5;MQM=35.8571;MQMR=60;NS=3;NUMALT=2;ODDS=0;PAIRED=0;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=264;QR=1903;RO=49;RPL=0;RPP=18.2106;RPPR=109.412;RPR=7;RUN=1;SAF=7;SAP=18.2106;SAR=0;SRF=49;SRP=109.412;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|0:25:23,2,0:23:894:2,0:80,0:0,-0.830921,-74.0803,-6.92369,-74.6824,-80.4199 0|0:9:9,0,0:9:349:0,0:0,0:0,-2.70927,-31.7694,-2.70927,-31.7694,-31.7694 0|1:25:17,5,3:17:660:5,3:184,122:-8.17177,0,-52.7087,-3.19741,-44.1479,-56.5686 dDocent_Contig_1378 24 . G C 57.348 . AB=0.173913;ABP=24.253;AC=1;AF=0.166667;AN=6;AO=4;CIGAR=1M4I1M2X1M1D3M3D1M1X;DP=53;DPB=53;DPRA=1.53333;EPP=11.6962;EPPR=96.3836;GTI=0;LEN=1;MEANALT=4;MQM=37;MQMR=60;NS=3;NUMALT=2;ODDS=0;PAIRED=0;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=158;QR=1690;RO=43;RPL=0;RPP=11.6962;RPPR=96.3836;RPR=4;RUN=1;SAF=4;SAP=11.6962;SAR=0;SRF=43;SRP=96.3836;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|1:23:14,4,3:14:546:4,3:158,39:-7.25767,0,-43.7976,-9.73793,-43.2238,-53.7284 0|0:19:19,0,0:19:748:0,0:0,0:0,-5.71957,-67.6487,-5.71957,-67.6487,-67.6487 0|0:11:10,0,0:10:396:0,0:0,0:0,-3.0103,-35.5912,-3.0103,-35.5912,-35.5912 dDocent_Contig_1380 10 . A T 2121.18 . AB=0.559055;ABP=6.8574;AC=3;AF=0.5;AN=6;AO=71;CIGAR=1X;DP=127;DPB=127;DPRA=0;EPP=157.185;EPPR=124.613;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=2833;QR=2260;RO=56;RPL=0;RPP=157.185;RPPR=124.613;RPR=71;RUN=1;SAF=71;SAP=157.185;SAR=0;SRF=56;SRP=124.613;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:64:28,36:28:1139:36:1449:-111.392,0,-83.5208 0/1:19:4,15:4:161:15:579:-46.7267,0,-9.15591 0/1:44:24,20:24:960:20:805:-59.5222,0,-73.4541 dDocent_Contig_1381 41 . T A 6963.43 . AB=0.791367;ABP=208.004;AC=3;AF=0.5;AN=6;AO=220;CIGAR=1X4M;DP=278;DPB=278;DPRA=0;EPP=480.734;EPPR=96.3836;GTI=0;LEN=1;MEANALT=3.33333;MQM=60;MQMR=60;NS=3;NUMALT=2;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=8688;QR=1722;RO=43;RPL=0;RPP=480.734;RPPR=96.3836;RPR=220;RUN=1;SAF=220;SAP=480.734;SAR=0;SRF=43;SRP=96.3836;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|1:133:16,3,110:16:644:3,110:121,4317:-350.159,-345.001,-397.176,0,-43.1062,-19.9675 0|1:44:11,3,29:11:437:3,29:120,1155:-91.7863,-85.2125,-120.286,0,-26.0879,-27.2434 0|1:101:16,1,81:16:641:1,81:39,3216:-259.92,-261.531,-314.04,0,-49.6046,-28.4265 dDocent_Contig_1382 73 . T C 7972.89 . AB=0.840336;ABP=242.456;AC=4;AF=0.666667;AN=6;AO=300;CIGAR=1X;DP=343;DPB=343;DPRA=0;EPP=654.452;EPPR=96.3836;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=1.38778e-17;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=9829;QR=1355;RO=43;RPL=300;RPP=654.452;RPPR=96.3836;RPR=0;RUN=1;SAF=300;SAP=654.452;SAR=0;SRF=43;SRP=96.3836;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:189:31,158:31:997:158:5203:-411.563,0,-33.1301 0/1:49:7,42:7:218:42:1384:-110.102,0,-5.17622 1/1:105:5,100:5:140:100:3242:-279.146,-18.7309,0 dDocent_Contig_1383 36 . T C 11031.1 . AB=0.868035;ABP=404.198;AC=4;AF=0.666667;AN=6;AO=338;CIGAR=1X;DP=384;DPB=384;DPRA=0;EPP=736.968;EPPR=100.727;GTI=0;LEN=1;MEANALT=1.33333;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=0.997041;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=13483;QR=1732;RO=45;RPL=0;RPP=736.968;RPPR=100.727;RPR=338;RUN=1;SAF=338;SAP=736.968;SAR=0;SRF=45;SRP=100.727;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:192:22,169:22:844:169:6760:-550.318,0,-18.5051 1/1:43:1,42:1:40:42:1676:-147.074,-8.94861,0 0/1:149:22,127:22:848:127:5047:-409.239,0,-31.779 dDocent_Contig_1384 40 . A G 352.318 . AB=0.169355;ABP=120.76;AC=2;AF=0.333333;AN=6;AO=32;CIGAR=1X;DP=265;DPB=265;DPRA=0;EPP=72.4974;EPPR=508.963;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=1267;QR=9275;RO=233;RPL=0;RPP=72.4974;RPPR=508.963;RPR=32;RUN=1;SAF=32;SAP=72.4974;SAR=0;SRF=233;SRP=508.963;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:141:130,11:130:5174:11:430:0,-3.39761,-426.481 0/1:53:48,5:48:1914:5:201:-2.5163,0,-156.51 0/1:71:55,16:55:2187:16:636:-36.1964,0,-175.638 dDocent_Contig_1385 8 . A G 108.776 . AB=0.2;ABP=26.4622;AC=1;AF=0.166667;AN=6;AO=7;CIGAR=1X;DP=55;DPB=55;DPRA=1.79167;EPP=18.2106;EPPR=107.241;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=266;QR=1781;RO=48;RPL=0;RPP=18.2106;RPPR=107.241;RPR=7;RUN=1;SAF=7;SAP=18.2106;SAR=0;SRF=48;SRP=107.241;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:30:24,6:24:886:6:234:-12.4002,0,-71.021 0/0:12:12,0:12:436:0:0:0,-3.61236,-39.5744 0/0:13:12,1:12:459:1:32:0,-0.714077,-38.4606 dDocent_Contig_1386 66 . T C 155.323 . AB=0.152778;ABP=78.4086;AC=2;AF=0.333333;AN=6;AO=11;CIGAR=1X;DP=79;DPB=79;DPRA=5.14286;EPP=26.8965;EPPR=150.67;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=3.46945e-18;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=444;QR=2692;RO=68;RPL=11;RPP=26.8965;RPPR=150.67;RPR=0;RUN=1;SAF=11;SAP=26.8965;SAR=0;SRF=68;SRP=150.67;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:33:26,7:26:1033:7:283:-15.9094,0,-83.3327 0/0:7:7,0:7:273:0:0:0,-2.10721,-24.9355 0/1:39:35,4:35:1386:4:161:-3.13531,0,-113.263 dDocent_Contig_1387 7 . T A 2488.77 . AB=0.292479;ABP=137.297;AC=3;AF=0.5;AN=6;AO=105;CIGAR=1X;DP=359;DPB=359;DPRA=0;EPP=231.015;EPPR=554.564;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=4018;QR=9711;RO=254;RPL=0;RPP=231.015;RPPR=554.564;RPR=105;RUN=1;SAF=105;SAP=231.015;SAR=0;SRF=254;SRP=554.564;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:198:143,55:143:5463:55:2114:-130.885,0,-432.052 0/1:51:44,7:44:1664:7:261:-8.49245,0,-134.671 0/1:110:67,43:67:2584:43:1643:-115.023,0,-199.641 dDocent_Contig_1388 30 . T A 1495.57 . AB=0.607143;ABP=11.386;AC=3;AF=0.5;AN=6;AO=51;CIGAR=1X;DP=84;DPB=84;DPRA=0;EPP=113.755;EPPR=74.6689;GTI=0;LEN=1;MEANALT=1;MQM=59.8627;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=0.980392;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=1993;QR=1288;RO=33;RPL=0;RPP=113.755;RPPR=74.6689;RPR=51;RUN=1;SAF=51;SAP=113.755;SAR=0;SRF=33;SRP=74.6689;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:58:21,37:21:819:37:1434:-111.861,0,-56.5661 0/1:5:2,3:2:75:3:121:-9.77505,0,-5.61495 0/1:21:10,11:10:394:11:438:-33.4442,0,-29.4972 dDocent_Contig_1389 98 . N A 237.024 . AB=0;ABP=0;AC=4;AF=1;AN=4;AO=10;CIGAR=1X;DP=10;DPB=10;DPRA=0;EPP=24.725;EPPR=0;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=0;NS=2;NUMALT=1;ODDS=0;PAIRED=0.6;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=255;QR=0;RO=0;RPL=10;RPP=24.725;RPPR=0;RPR=0;RUN=1;SAF=10;SAP=24.725;SAR=0;SRF=0;SRP=0;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 1/1:7:0,7:0:0:7:206:-18.829,-2.10721,0 ./.:.:.:.:.:.:.:. 1/1:3:0,3:0:0:3:49:-4.57205,-0.90309,0 dDocent_Contig_1390 43 . T A 51.9522 . AB=0.25;ABP=9.52472;AC=1;AF=0.166667;AN=6;AO=3;CIGAR=1X;DP=44;DPB=44;DPRA=0.75;EPP=9.52472;EPPR=92.0407;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=114;QR=1485;RO=41;RPL=0;RPP=9.52472;RPPR=92.0407;RPR=3;RUN=1;SAF=3;SAP=9.52472;SAR=0;SRF=41;SRP=92.0407;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:19:19,0:19:705:0:0:0,-5.71957,-63.7789 0/0:13:13,0:13:480:0:0:0,-3.91339,-43.5414 0/1:12:9,3:9:300:3:114:-7.01912,0,-23.7081 dDocent_Contig_1392 17 . G A 302.839 . AB=0.128378;ABP=180.543;AC=3;AF=0.5;AN=6;AO=19;CIGAR=1X4M;DP=148;DPB=148;DPRA=0;EPP=44.2683;EPPR=263.587;GTI=0;LEN=1;MEANALT=2;MQM=60;MQMR=60;NS=3;NUMALT=3;ODDS=0;PAIRED=0.894737;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=753;QR=4604;RO=120;RPL=0;RPP=44.2683;RPPR=263.587;RPR=19;RUN=1;SAF=19;SAP=44.2683;SAR=0;SRF=120;SRP=263.587;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|1:57:47,0,0,10:47:1817:0,0,10:0,0,398:-19.0163,-33.1647,-182.385,-33.1647,-182.385,-182.385,0,-149.615,-149.615,-146.605 0|1:36:24,6,2,3:24:921:6,2,3:235,81,123:-12.1011,0,-73.7856,-12.6437,-68.9112,-87.6348,-9.16699,-65.4368,-78.0822,-83.8596 0|1:55:49,0,0,6:49:1866:0,0,6:0,0,232:-4.689,-19.4395,-172.475,-19.4395,-172.475,-172.475,0,-153.421,-153.421,-151.615 dDocent_Contig_1393 10 . T G 82.6951 . AB=0.142857;ABP=57.2971;AC=1;AF=0.166667;AN=6;AO=7;CIGAR=1X;DP=207;DPB=207;DPRA=0.620253;EPP=18.2106;EPPR=437.305;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=272;QR=8026;RO=200;RPL=0;RPP=18.2106;RPPR=437.305;RPR=7;RUN=1;SAF=7;SAP=18.2106;SAR=0;SRF=200;SRP=437.305;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:63:63,0:63:2533:0:0:0,-18.9649,-228.099 0/1:49:42,7:42:1679:7:272:-10.0934,0,-136.583 0/0:95:95,0:95:3814:0:0:0,-28.5978,-343.245 dDocent_Contig_1394 9 . T G 97.3973 . AB=0.263158;ABP=12.2676;AC=1;AF=0.166667;AN=6;AO=6;CIGAR=1X;DP=138;DPB=138;DPRA=0.9375;EPP=16.0391;EPPR=289.645;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=220;QR=5059;RO=132;RPL=0;RPP=16.0391;RPPR=289.645;RPR=6;RUN=1;SAF=6;SAP=16.0391;SAR=0;SRF=132;SRP=289.645;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:71:70,1:70:2679:1:32:0,-18.1738,-238.097 0/1:19:14,5:14:542:5:188:-11.5636,0,-43.4064 0/0:48:48,0:48:1838:0:0:0,-14.4494,-165.67 dDocent_Contig_1395 18 . A C 444.994 . AB=0.115764;ABP=523.65;AC=2;AF=0.333333;AN=6;AO=55;CIGAR=1X;DP=589;DPB=589;DPRA=0;EPP=122.441;EPPR=1153.89;GTI=0;LEN=1;MEANALT=1.66667;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=2196;QR=20753;RO=530;RPL=0;RPP=122.441;RPPR=1153.89;RPR=55;RUN=1;SAF=55;SAP=122.441;SAR=0;SRF=530;SRP=1153.89;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:291:259,29:259:10214:29:1155:-17.2439,0,-831.711 0/1:115:97,18:97:3706:18:723:-30.7784,0,-298.98 0/0:183:174,8:174:6833:8:318:0,-26.0046,-585.772 dDocent_Contig_1396 18 . C A 41.5034 . AB=0.0344828;ABP=221.356;AC=4;AF=0.666667;AN=6;AO=4;CIGAR=1X2M25I26M;DP=128;DPB=131.448;DPRA=4.83333;EPP=11.6962;EPPR=39.9253;GTI=0;LEN=1;MEANALT=5;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=5.55112e-17;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=154;QR=651;RO=17;RPL=0;RPP=11.6962;RPPR=39.9253;RPR=4;RUN=1;SAF=4;SAP=11.6962;SAR=0;SRF=17;SRP=39.9253;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|1:89:12,2:12:462:2:78:-2.8006,0,-37.3367 1|1:12:0,0:0:0:0:0:0,0,0 0|1:27:5,2:5:189:2:76:-4.72955,0,-14.8942 dDocent_Contig_1397 21 . T C 803.275 . AB=0.162252;ABP=302.242;AC=3;AF=0.5;AN=6;AO=49;CIGAR=1X;DP=302;DPB=302;DPRA=0;EPP=109.412;EPPR=552.393;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=1953;QR=10143;RO=253;RPL=0;RPP=109.412;RPPR=552.393;RPR=49;RUN=1;SAF=49;SAP=109.412;SAR=0;SRF=253;SRP=552.393;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:191:158,33:158:6339:33:1312:-60.8446,0,-512.735 0/1:22:16,6:16:643:6:238:-15.1691,0,-51.5788 0/1:89:79,10:79:3161:10:403:-9.8366,0,-257.765 dDocent_Contig_1399 83 . C T 316.179 . AB=0.178862;ABP=113.19;AC=2;AF=0.333333;AN=6;AO=22;CIGAR=1X;DP=139;DPB=139;DPRA=3.84375;EPP=50.7827;EPPR=257.073;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=6.93889e-18;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=777;QR=4020;RO=117;RPL=22;RPP=50.7827;RPPR=257.073;RPR=0;RUN=1;SAF=22;SAP=50.7827;SAR=0;SRF=117;SRP=257.073;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:71:54,17:54:1875:17:602:-33.1368,0,-147.66 0/0:16:16,0:16:558:0:0:0,-4.81648,-50.5494 0/1:52:47,5:47:1587:5:175:-0.440135,0,-127.464 dDocent_Contig_1400 192 . T C 771.047 . AB=0.483333;ABP=3.15506;AC=3;AF=0.5;AN=6;AO=29;CIGAR=1X;DP=60;DPB=60;DPRA=0;EPP=65.983;EPPR=70.3259;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=1087;QR=1228;RO=31;RPL=29;RPP=65.983;RPPR=70.3259;RPR=0;RUN=1;SAF=0;SAP=65.983;SAR=29;SRF=0;SRP=70.3259;SRR=31;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:27:20,7:20:801:7:263:-15.9,0,-64.2765 0/1:21:10,11:10:389:11:397:-29.7455,0,-29.0392 0/1:12:1,11:1:38:11:427:-35.1648,0,-0.184909 dDocent_Contig_1401 45 . T G 5807.76 . AB=0.875;ABP=257.073;AC=3;AF=0.5;AN=6;AO=182;CIGAR=1X;DP=208;DPB=208;DPRA=0;EPP=389.58;EPPR=59.4686;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=7205;QR=1049;RO=26;RPL=1;RPP=389.58;RPPR=59.4686;RPR=181;RUN=1;SAF=182;SAP=398.218;SAR=0;SRF=26;SRP=59.4686;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:111:12,99:12:489:99:3905:-318.033,0,-10.947 0/1:28:4,24:4:163:24:968:-78.9905,0,-6.62959 0/1:69:10,59:10:397:59:2332:-189.276,0,-15.3172 dDocent_Contig_1402 8 . C A 10027.7 . AB=0.176259;ABP=509.166;AC=6;AF=1;AN=6;AO=98;CIGAR=1X5M;DP=556;DPB=556;DPRA=0;EPP=207.217;EPPR=63.8115;GTI=0;LEN=1;MEANALT=8;MQM=48.0918;MQMR=60;NS=3;NUMALT=5;ODDS=0;PAIRED=0;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=3591;QR=1090;RO=28;RPL=0;RPP=215.815;RPPR=63.8115;RPR=98;RUN=1;SAF=97;SAP=207.217;SAR=1;SRF=28;SRP=63.8115;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 1|1:190:17,3,12,99,10,41:17:657:3,12,99,10,41:107,439,3206,389,1534:-301.868,-299.071,-352.135,-272.645,-318.698,-323,-68.9336,-114.988,-88.5645,-93.0991,-280.537,-326.59,-300.165,-96.457,-331.494,-184.077,-230.132,-203.706,0,-211.598,-225.704 1|1:184:7,6,2,124,7,32:7:275:6,2,124,7,32:188,75,3917,278,1119:-353.224,-341.319,-362.135,-349.187,-357.797,-371.208,-65.1145,-73.7327,-81.5959,-50.4129,-339.507,-348.117,-355.985,-71.9226,-360.022,-267.582,-276.193,-284.061,0,-274.382,-280.573 1|1:182:4,10,7,120,2,25:4:158:10,7,120,2,25:342,233,3909,80,938:-353.198,-327.784,-337.778,-337.436,-323.822,-348.333,-61.7552,-48.1465,-57.799,-38.6366,-348.786,-335.172,-344.823,-69.1443,-361.188,-279.646,-266.031,-275.683,0,-287.033,-285.124 dDocent_Contig_1403 36 . T C 74.9833 . AB=0;ABP=0;AC=2;AF=1;AN=2;AO=2;CIGAR=1X;DP=2;DPB=2;DPRA=0;EPP=7.35324;EPPR=0;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=0;NS=1;NUMALT=1;ODDS=5.99146;PAIRED=1;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=79;QR=0;RO=0;RPL=0;RPP=7.35324;RPPR=0;RPR=2;RUN=1;SAF=2;SAP=7.35324;SAR=0;SRF=0;SRP=0;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 1/1:2:0,2:0:0:2:79:-7.49724,-0.60206,0 ./.:.:.:.:.:.:.:. ./.:.:.:.:.:.:.:. dDocent_Contig_1404 10 . T A 329.372 . AB=0.25;ABP=37.7539;AC=3;AF=0.5;AN=6;AO=16;CIGAR=1X;DP=64;DPB=64;DPRA=0;EPP=37.7539;EPPR=107.241;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=3.46945e-18;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=629;QR=1923;RO=48;RPL=0;RPP=37.7539;RPPR=107.241;RPR=16;RUN=1;SAF=16;SAP=37.7539;SAR=0;SRF=48;SRP=107.241;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:41:32,9:32:1289:9:359:-20.3311,0,-103.932 0/1:10:6,4:6:238:4:151:-10.9474,0,-18.7822 0/1:13:10,3:10:396:3:119:-7.18162,0,-32.0854 dDocent_Contig_1405 14 . T G 3062.36 . AB=0.46087;ABP=6.06924;AC=3;AF=0.5;AN=6;AO=106;CIGAR=1X;DP=230;DPB=230;DPRA=0;EPP=233.186;EPPR=272.273;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=1.38778e-17;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=4225;QR=4878;RO=124;RPL=0;RPP=233.186;RPPR=272.273;RPR=106;RUN=1;SAF=106;SAP=233.186;SAR=0;SRF=124;SRP=272.273;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:107:63,44:63:2500:44:1764:-126.765,0,-192.949 0/1:46:26,20:26:997:20:771:-55.8513,0,-76.177 0/1:77:35,42:35:1381:42:1690:-129.143,0,-101.376 dDocent_Contig_1406 42 . A C 4177.74 . AB=0.745946;ABP=100.21;AC=3;AF=0.5;AN=6;AO=138;CIGAR=1X2M1X;DP=185;DPB=185;DPRA=0;EPP=302.673;EPPR=94.2121;GTI=0;LEN=1;MEANALT=2;MQM=52.529;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=5421;QR=1644;RO=42;RPL=0;RPP=302.673;RPPR=94.2121;RPR=138;RUN=1;SAF=138;SAP=302.673;SAR=0;SRF=42;SRP=94.2121;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|1:66:28,37:28:1094:37:1468:-111.117,0,-78.786 0|1:72:10,59:10:390:59:2300:-182.366,0,-14.303 0|1:47:4,42:4:160:42:1653:-128.346,0,-0.536481 dDocent_Contig_1407 15 . T A 36.9339 . AB=0.125;ABP=42.0968;AC=1;AF=0.166667;AN=6;AO=5;CIGAR=1X;DP=61;DPB=61;DPRA=1.84615;EPP=13.8677;EPPR=124.613;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=205;QR=2213;RO=56;RPL=0;RPP=13.8677;RPPR=124.613;RPR=5;RUN=1;SAF=5;SAP=13.8677;SAR=0;SRF=56;SRP=124.613;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:16:15,1:15:602:1:41:0,-0.721913,-50.4215 0/1:32:28,4:28:1096:4:164:-5.51694,0,-89.2949 0/0:13:13,0:13:515:0:0:0,-3.91339,-46.6939 dDocent_Contig_1408 7 . T A 10258.1 . AB=0.328929;ABP=368.542;AC=3;AF=0.5;AN=6;AO=473;CIGAR=1X;DP=1438;DPB=1438;DPRA=0;EPP=1030.12;EPPR=2065.92;GTI=0;LEN=1;MEANALT=2;MQM=42.3742;MQMR=54.0566;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=0.996855;PAO=0;PQA=0;PQR=0;PRO=0;QA=18101;QR=36493;RO=954;RPL=0;RPP=1030.12;RPPR=2074.59;RPR=473;RUN=1;SAF=473;SAP=1030.12;SAR=0;SRF=953;SRP=2065.92;SRR=1;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:671:453,217:453:17365:217:8268:-465.73,0,-1316.05 0/1:350:225,120:225:8507:120:4563:-261.857,0,-647.16 0/1:417:276,136:276:10621:136:5270:-303.748,0,-812.379 dDocent_Contig_1409 20 . C A 49.638 . AB=0.109375;ABP=87.8334;AC=1;AF=0.166667;AN=6;AO=7;CIGAR=1X;DP=143;DPB=143;DPRA=1.62025;EPP=18.2106;EPPR=298.331;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=282;QR=5467;RO=136;RPL=0;RPP=18.2106;RPPR=298.331;RPR=7;RUN=1;SAF=7;SAP=18.2106;SAR=0;SRF=136;SRP=298.331;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:64:57,7:57:2295:7:282:-6.48667,0,-187.436 0/0:27:27,0:27:1097:0:0:0,-8.12781,-99.0138 0/0:52:52,0:52:2075:0:0:0,-15.6536,-186.922 dDocent_Contig_1410 7 . T A 1280.62 . AB=0.392157;ABP=18.4661;AC=3;AF=0.5;AN=6;AO=60;CIGAR=1X;DP=153;DPB=153;DPRA=0;EPP=133.299;EPPR=187.959;GTI=0;LEN=1;MEANALT=1;MQM=38.8667;MQMR=59.0968;NS=3;NUMALT=1;ODDS=0;PAIRED=0.166667;PAIREDR=0.677419;PAO=0;PQA=0;PQR=0;PRO=0;QA=2249;QR=3536;RO=93;RPL=0;RPP=133.299;RPPR=204.957;RPR=60;RUN=1;SAF=60;SAP=133.299;SAR=0;SRF=91;SRP=187.959;SRR=2;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:77:54,23:54:2048:23:882:-47.454,0,-160.584 0/1:31:16,15:16:600:15:566:-32.6677,0,-45.0022 0/1:45:23,22:23:888:22:801:-53.4634,0,-66.6924 dDocent_Contig_1412 15 . G A 183.753 . AB=0.180328;ABP=57.1547;AC=2;AF=0.333333;AN=6;AO=11;CIGAR=1X;DP=75;DPB=75;DPRA=2.17857;EPP=26.8965;EPPR=141.985;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=439;QR=2565;RO=64;RPL=0;RPP=26.8965;RPPR=141.985;RPR=11;RUN=1;SAF=11;SAP=26.8965;SAR=0;SRF=64;SRP=141.985;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:26:20,6:20:803:6:238:-13.9642,0,-64.7588 0/0:14:14,0:14:543:0:0:0,-4.21442,-49.2059 0/1:35:30,5:30:1219:5:201:-7.93396,0,-99.4425 dDocent_Contig_1414 55 . T C 821.281 . AB=0.347368;ABP=22.2335;AC=3;AF=0.5;AN=6;AO=33;CIGAR=1X;DP=95;DPB=95;DPRA=0;EPP=74.6689;EPPR=137.642;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=6.93889e-18;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=1280;QR=2450;RO=62;RPL=33;RPP=74.6689;RPPR=137.642;RPR=0;RUN=1;SAF=33;SAP=74.6689;SAR=0;SRF=62;SRP=137.642;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:59:45,14:45:1759:14:535:-30.7262,0,-140.756 0/1:13:4,9:4:160:9:359:-28.7593,0,-10.8706 0/1:23:13,10:13:531:10:386:-28.1654,0,-41.2127 dDocent_Contig_1415 13 . G A 8751.35 . AB=0.0365169;ABP=667.261;AC=3;AF=0.5;AN=6;AO=13;CIGAR=1X3M;DP=356;DPB=356;DPRA=0;EPP=31.2394;EPPR=79.0118;GTI=0;LEN=1;MEANALT=3.33333;MQM=60;MQMR=60;NS=3;NUMALT=3;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=521;QR=1365;RO=35;RPL=0;RPP=31.2394;RPPR=79.0118;RPR=13;RUN=1;SAF=13;SAP=31.2394;SAR=0;SRF=35;SRP=79.0118;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|1:176:26,120,4,25:26:1012:120,4,25:4779,164,974:-385.694,0,-47.0443,-379.984,-69.6302,-461.948,-313.485,-3.1316,-383.116,-389.127 1|0:42:1,31,2,8:1:37:31,2,8:1219,82,324:-123.649,-23.6987,-17.3905,-117.181,-19.9527,-119.605,-97.2314,0,-93.4885,-97.8495 1|0:138:8,102,7,21:8:316:102,7,21:4019,275,839:-371.315,-43.1018,-38.3998,-351.107,-46.4898,-375.004,-304.621,0,-308.009,-324.303 dDocent_Contig_1416 7 . A T 4928.51 . AB=0.486891;ABP=3.40881;AC=3;AF=0.5;AN=6;AO=130;CIGAR=1X1M1X1M;DP=267;DPB=267;DPRA=0;EPP=285.302;EPPR=105.07;GTI=0;LEN=1;MEANALT=2.66667;MQM=60;MQMR=60;NS=3;NUMALT=3;ODDS=5.55112e-17;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=4910;QR=1795;RO=47;RPL=0;RPP=285.302;RPPR=105.07;RPR=130;RUN=1;SAF=130;SAP=285.302;SAR=0;SRF=47;SRP=105.07;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 1|0:101:17,0,55,29:17:646:0,55,29:0,2083,1141:-206.54,-211.658,-264.636,-40.8953,-93.8688,-77.3122,-117.793,-170.771,0,-162.041 1|0:91:10,5,53,23:10:382:5,53,23:190,2006,890:-203.207,-190.634,-220.473,-41.7679,-57.5286,-57.1557,-133.108,-148.869,0,-157.528 1|0:75:20,5,22,28:20:767:5,22,28:190,821,1099:-88.6268,-79.0656,-140.515,-27.4411,-74.8114,-83.7701,-4.25059,-51.6263,0,-58.7799 dDocent_Contig_1417 18 . G A 35.6669 . AB=0.107143;ABP=115.617;AC=1;AF=0.166667;AN=6;AO=9;CIGAR=1X;DP=260;DPB=260;DPRA=0.954545;EPP=22.5536;EPPR=545.878;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=337;QR=9881;RO=250;RPL=0;RPP=22.5536;RPPR=545.878;RPR=9;RUN=1;SAF=9;SAP=22.5536;SAR=0;SRF=250;SRP=545.878;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:148:148,0:148:5865:0:0:0,-44.5524,-527.657 0/0:28:27,0:27:1072:0:0:0,-8.12781,-96.6609 0/1:84:75,9:75:2944:9:337:-5.39048,0,-239.767 dDocent_Contig_1418 19 . C T 1523.83 . AB=0.131291;ABP=1082.27;AC=2;AF=0.333333;AN=6;AO=206;CIGAR=1X;DP=1958;DPB=1958;DPRA=0;EPP=450.334;EPPR=3805.26;GTI=0;LEN=1;MEANALT=1.33333;MQM=60;MQMR=59.9583;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=0.943461;PAO=0;PQA=0;PQR=0;PRO=0;QA=8151;QR=70123;RO=1751;RPL=0;RPP=450.334;RPPR=3805.26;RPR=206;RUN=1;SAF=206;SAP=450.334;SAR=0;SRF=1751;SRP=3805.26;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:1044:957,86:957:38415:86:3365:0,-11.4562,-3150.75 0/1:254:216,38:216:8608:38:1510:-59.6849,0,-697.593 0/1:660:578,82:578:23100:82:3276:-96.2208,0,-1878.18 dDocent_Contig_1420 30 . G A 259.563 . AB=0.322581;ABP=11.486;AC=1;AF=0.166667;AN=6;AO=11;CIGAR=1X;DP=67;DPB=67;DPRA=1.02273;EPP=26.8965;EPPR=124.613;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=3.46945e-18;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=446;QR=2218;RO=56;RPL=0;RPP=26.8965;RPPR=124.613;RPR=11;RUN=1;SAF=11;SAP=26.8965;SAR=0;SRF=56;SRP=124.613;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:31:21,10:21:843:10:405:-27.4781,0,-66.851 0/0:22:22,0:22:851:0:0:0,-6.62266,-76.8975 0/0:14:13,1:13:524:1:41:0,-0.119853,-43.4131 dDocent_Contig_1421 41 . C T 63.8408 . AB=0.142857;ABP=41.7866;AC=1;AF=0.166667;AN=6;AO=5;CIGAR=1X;DP=80;DPB=80;DPRA=1.55556;EPP=13.8677;EPPR=165.871;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=204;QR=3020;RO=75;RPL=0;RPP=13.8677;RPPR=165.871;RPR=5;RUN=1;SAF=5;SAP=13.8677;SAR=0;SRF=75;SRP=165.871;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:38:38,0:38:1533:0:0:0,-11.4391,-138.201 0/0:7:7,0:7:283:0:0:0,-2.10721,-25.8434 0/1:35:30,5:30:1204:5:204:-8.20798,0,-98.0966 dDocent_Contig_1422 27 . T C 298.091 . AB=0.588235;ABP=4.1599;AC=1;AF=0.166667;AN=6;AO=10;CIGAR=1X;DP=38;DPB=38;DPRA=1.61905;EPP=24.725;EPPR=63.8115;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=401;QR=1120;RO=28;RPL=0;RPP=24.725;RPPR=63.8115;RPR=10;RUN=1;SAF=10;SAP=24.725;SAR=0;SRF=28;SRP=63.8115;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:17:7,10:7:277:10:401:-31.332,0,-20.1817 0/0:6:6,0:6:240:0:0:0,-1.80618,-21.9745 0/0:15:15,0:15:603:0:0:0,-4.51545,-54.608 dDocent_Contig_1423 28 . T A 4871.11 . AB=0.801105;ABP=145.548;AC=4;AF=0.666667;AN=6;AO=154;CIGAR=1X;DP=190;DPB=190;DPRA=0;EPP=337.417;EPPR=81.1833;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=6050;QR=1431;RO=36;RPL=0;RPP=337.417;RPPR=81.1833;RPR=154;RUN=1;SAF=154;SAP=337.417;SAR=0;SRF=36;SRP=81.1833;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:135:23,112:23:915:112:4404:-355.704,0,-42.0201 1/1:9:0,9:0:0:9:354:-32.2203,-2.70927,0 0/1:46:13,33:13:516:33:1292:-102.709,0,-32.9389 dDocent_Contig_1424 33 . C T 860.357 . AB=0.485714;ABP=3.13438;AC=3;AF=0.5;AN=6;AO=34;CIGAR=1X;DP=70;DPB=70;DPRA=0;EPP=76.8404;EPPR=81.1833;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=0.941176;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=1240;QR=1464;RO=36;RPL=0;RPP=76.8404;RPPR=81.1833;RPR=34;RUN=1;SAF=34;SAP=76.8404;SAR=0;SRF=36;SRP=81.1833;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:39:26,13:26:1062:13:475:-31.3495,0,-84.1246 0/1:10:2,8:2:77:8:299:-24.2545,0,-4.2979 0/1:21:8,13:8:325:13:466:-35.9539,0,-23.2978 dDocent_Contig_1427 9 . T C 183.877 . AB=0.230769;ABP=27.5646;AC=1;AF=0.166667;AN=6;AO=10;CIGAR=1X;DP=165;DPB=165;DPRA=0.459302;EPP=24.725;EPPR=339.589;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=390;QR=5833;RO=155;RPL=0;RPP=24.725;RPPR=339.589;RPR=10;RUN=1;SAF=10;SAP=24.725;SAR=0;SRF=155;SRP=339.589;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:86:86,0:86:3242:0:0:0,-25.8886,-291.934 0/0:40:39,1:39:1467:1:39:0,-8.14463,-128.411 0/1:39:30,9:30:1124:9:351:-20.2117,0,-89.7178 dDocent_Contig_1428 12 . G C 139.296 . AB=0.195652;ABP=40.0197;AC=2;AF=0.333333;AN=6;AO=9;CIGAR=1X;DP=56;DPB=56;DPRA=2.3;EPP=22.5536;EPPR=105.07;GTI=0;LEN=1;MEANALT=1;MQM=42;MQMR=60;NS=3;NUMALT=1;ODDS=3.46945e-18;PAIRED=0;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=358;QR=1795;RO=47;RPL=0;RPP=22.5536;RPPR=105.07;RPR=9;RUN=1;SAF=9;SAP=22.5536;SAR=0;SRF=47;SRP=105.07;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:31:27,4:27:1027:4:161:-4.7312,0,-83.4033 0/0:10:10,0:10:375:0:0:0,-3.0103,-34.098 0/1:15:10,5:10:393:5:197:-12.7211,0,-31.2133 dDocent_Contig_1429 7 . T C 4998.36 . AB=0.721992;ABP=106.169;AC=3;AF=0.5;AN=6;AO=174;CIGAR=1X3M;DP=241;DPB=241;DPRA=0;EPP=380.846;EPPR=133.299;GTI=0;LEN=1;MEANALT=1.66667;MQM=45.5632;MQMR=60;NS=3;NUMALT=2;ODDS=0;PAIRED=0;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=6532;QR=2297;RO=60;RPL=0;RPP=380.846;RPPR=133.299;RPR=174;RUN=1;SAF=174;SAP=380.846;SAR=0;SRF=60;SRP=133.299;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|1:111:22,6,83:22:839:6,83:204,3143:-245.47,-238.338,-305.363,0,-55.1615,-43.9164 0|1:41:21,0,20:21:805:0,20:0,746:-54.0139,-60.3355,-126.414,0,-66.4536,-60.433 0|1:89:17,0,71:17:653:0,71:0,2643:-205.875,-210.992,-264.601,0,-53.6105,-32.2374 dDocent_Contig_1430 23 . T A 137.071 . AB=0.177778;ABP=43.5927;AC=1;AF=0.166667;AN=6;AO=11;CIGAR=1X;DP=161;DPB=161;DPRA=0;EPP=26.8965;EPPR=328.731;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=439;QR=6042;RO=150;RPL=0;RPP=26.8965;RPPR=328.731;RPR=11;RUN=1;SAF=11;SAP=26.8965;SAR=0;SRF=150;SRP=328.731;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:94:92,2:92:3703:2:81:0,-20.6111,-325.586 0/0:22:21,1:21:843:1:39:0,-2.7261,-72.2868 0/1:45:37,8:37:1496:8:319:-15.531,0,-121.333 dDocent_Contig_1432 9 . T A 375.318 . AB=0.111111;ABP=62.1226;AC=3;AF=0.5;AN=6;AO=5;CIGAR=1M1X1M1X;DP=81;DPB=86;DPRA=0;EPP=13.8677;EPPR=122.441;GTI=0;LEN=1;MEANALT=2;MQM=60;MQMR=60;NS=3;NUMALT=2;ODDS=6.93889e-18;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=154;QR=2092;RO=55;RPL=0;RPP=13.8677;RPPR=122.441;RPR=5;RUN=1;SAF=5;SAP=13.8677;SAR=0;SRF=55;SRP=122.441;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|1:36:29,6,0:29:1104:6,0:204,0:-7.81283,0,-88.7882,-16.5427,-90.5944,-107.131 0|1:24:14,9,1:14:535:9,1:336,35:-23.3169,0,-41.219,-24.6859,-41.0827,-68.2887 0|1:21:12,5,4:12:453:5,4:189,119:-11.925,0,-35.684,-6.07181,-27.7079,-41.9966 dDocent_Contig_1433 107 . N T 164.605 . AB=0;ABP=0;AC=2;AF=1;AN=2;AO=5;CIGAR=1X;DP=5;DPB=5;DPRA=0;EPP=13.8677;EPPR=0;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=0;NS=1;NUMALT=1;ODDS=8.07091;PAIRED=1;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=179;QR=0;RO=0;RPL=0;RPP=13.8677;RPPR=0;RPR=5;RUN=1;SAF=0;SAP=13.8677;SAR=5;SRF=0;SRP=0;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL ./.:.:.:.:.:.:.:. ./.:.:.:.:.:.:.:. 1/1:5:0,5:0:0:5:179:-16.4604,-1.50515,0 dDocent_Contig_1436 65 . C G 1204.96 . AB=0.331034;ABP=38.9669;AC=3;AF=0.5;AN=6;AO=48;CIGAR=1X;DP=145;DPB=145;DPRA=0;EPP=107.241;EPPR=213.643;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=1874;QR=3791;RO=97;RPL=48;RPP=107.241;RPPR=213.643;RPR=0;RUN=1;SAF=48;SAP=107.241;SAR=0;SRF=97;SRP=213.643;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:77:64,13:64:2553:13:524:-24.3274,0,-206.731 0/1:24:9,15:9:354:15:592:-46.3891,0,-24.9939 0/1:44:24,20:24:884:20:758:-55.3024,0,-66.6197 dDocent_Contig_1437 19 . T C 9471.2 . AB=0.0727273;ABP=264.653;AC=5;AF=0.833334;AN=6;AO=13;CIGAR=1X4M3D1M;DP=353;DPB=248.556;DPRA=0;EPP=31.2394;EPPR=85.5263;GTI=0;LEN=1;MEANALT=3.33333;MQM=58.7692;MQMR=60;NS=3;NUMALT=2;ODDS=2.77556e-17;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=473;QR=1507;RO=38;RPL=0;RPP=31.2394;RPPR=85.5263;RPR=13;RUN=1;SAF=13;SAP=31.2394;SAR=0;SRF=38;SRP=85.5263;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 1|1:188:12,171,1:12:474:171,1:6616,23:-552.303,-12.4047,0,-554.147,-49.7158,-592.851 1|1:88:9,68,11:9:359:68,11:2614,409:-215.688,-3.79519,-12.9025,-185.011,0,-211.266 0|1:77:17,59,1:17:674:59,1:2286,41:-182.653,0,-37.7046,-184.386,-52.0805,-239.565 dDocent_Contig_1438 48 . C A 611.542 . AB=0.205298;ABP=116.919;AC=3;AF=0.5;AN=6;AO=31;CIGAR=1X;DP=151;DPB=151;DPRA=0;EPP=70.3259;EPPR=263.587;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=1231;QR=4854;RO=120;RPL=31;RPP=70.3259;RPPR=263.587;RPR=0;RUN=1;SAF=31;SAP=70.3259;SAR=0;SRF=120;SRP=263.587;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:78:67,11:67:2722:11:439:-16.3843,0,-221.601 0/1:18:16,2:16:654:2:76:-1.795,0,-53.7732 0/1:55:37,18:37:1478:18:716:-48.2108,0,-116.712 dDocent_Contig_1440 16 . A G 82.565 . AB=0.110169;ABP=158.767;AC=2;AF=0.333333;AN=6;AO=13;CIGAR=1X;DP=300;DPB=300;DPRA=0.324176;EPP=31.2394;EPPR=626.223;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=511;QR=11390;RO=287;RPL=0;RPP=31.2394;RPPR=626.223;RPR=13;RUN=1;SAF=13;SAP=31.2394;SAR=0;SRF=287;SRP=626.223;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:182:182,0:182:7219:0:0:0,-54.7875,-649.366 0/1:22:20,2:20:779:2:82:-1.15702,0,-63.7933 0/1:96:85,11:85:3392:11:429:-10.0601,0,-276.437 dDocent_Contig_1441 37 . A T 37.6677 . AB=0.133333;ABP=38.0434;AC=2;AF=0.333333;AN=6;AO=4;CIGAR=1X;DP=53;DPB=53;DPRA=0.652174;EPP=11.6962;EPPR=109.412;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=158;QR=1947;RO=49;RPL=0;RPP=11.6962;RPPR=109.412;RPR=4;RUN=1;SAF=4;SAP=11.6962;SAR=0;SRF=49;SRP=109.412;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:19:16,3:16:639:3:118:-5.28263,0,-52.1242 0/0:23:23,0:23:906:0:0:0,-6.92369,-81.8447 0/1:11:10,1:10:402:1:40:-0.684349,0,-33.2285 dDocent_Contig_1443 32 . T C 3807.3 . AB=0.48659;ABP=3.41797;AC=3;AF=0.5;AN=6;AO=127;CIGAR=1X2M;DP=261;DPB=261;DPRA=0;EPP=278.787;EPPR=239.701;GTI=0;LEN=1;MEANALT=3;MQM=60;MQMR=60;NS=3;NUMALT=3;ODDS=0;PAIRED=0.897638;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=5087;QR=4359;RO=109;RPL=0;RPP=278.787;RPPR=239.701;RPR=127;RUN=1;SAF=127;SAP=278.787;SAR=0;SRF=109;SRP=239.701;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|1:155:65,11,5,74:65:2610:11,5,74:436,193,2977:-225.777,-209.458,-421.209,-229.494,-408.67,-443.051,0,-179.183,-199.22,-192.793 0|1:23:11,2,2,8:11:432:2,2,8:82,80,315:-22.591,-19.1317,-54.0583,-19.3117,-48.0696,-54.2373,0,-28.7506,-28.9301,-33.1127 0|1:83:33,3,2,45:33:1317:3,2,45:121,77,1795:-137.885,-137.845,-245.405,-141.497,-239.986,-249.359,0,-98.4919,-102.145,-94.92 dDocent_Contig_1444 33 . T C 721.031 . AB=0.278846;ABP=47.1914;AC=2;AF=0.333333;AN=6;AO=30;CIGAR=1X;DP=123;DPB=123;DPRA=0;EPP=68.1545;EPPR=204.957;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=1211;QR=3716;RO=93;RPL=0;RPP=68.1545;RPPR=204.957;RPR=30;RUN=1;SAF=30;SAP=68.1545;SAR=0;SRF=93;SRP=204.957;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:82:55,27:55:2197:27:1089:-73.6095,0,-173.215 0/0:19:18,1:18:706:1:41:0,-1.625,-59.7696 0/1:22:20,2:20:813:2:81:-1.06307,0,-66.862 dDocent_Contig_1445 14 . C T 288.022 . AB=0.342857;ABP=10.5174;AC=2;AF=0.333333;AN=6;AO=12;CIGAR=1X;DP=43;DPB=43;DPRA=2.1875;EPP=29.068;EPPR=70.3259;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=0.25;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=468;QR=1244;RO=31;RPL=0;RPP=29.068;RPPR=70.3259;RPR=12;RUN=1;SAF=12;SAP=29.068;SAR=0;SRF=31;SRP=70.3259;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:26:17,9:17:685:9:350:-24.0317,0,-54.1536 0/0:8:8,0:8:317:0:0:0,-2.40824,-28.8966 0/1:9:6,3:6:242:3:118:-8.29345,0,-19.4477 dDocent_Contig_1446 95 . C T 65.6151 . AB=0.307692;ABP=7.18621;AC=1;AF=0.166667;AN=6;AO=7;CIGAR=1X;DP=59;DPB=59;DPRA=5.4;EPP=18.2106;EPPR=115.927;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=233;QR=1747;RO=52;RPL=7;RPP=18.2106;RPPR=115.927;RPR=0;RUN=1;SAF=7;SAP=18.2106;SAR=0;SRF=52;SRP=115.927;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:41:38,3:38:1271:3:100:0,-3.01211,-105.355 0/0:5:5,0:5:169:0:0:0,-1.50515,-15.5426 0/1:13:9,4:9:307:4:133:-8.38537,0,-24.0482 dDocent_Contig_1447 21 . G A 928.664 . AB=0.192771;ABP=207.155;AC=3;AF=0.5;AN=6;AO=48;CIGAR=1X;DP=249;DPB=249;DPRA=0;EPP=107.241;EPPR=439.476;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=1.38778e-17;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=1915;QR=8081;RO=201;RPL=0;RPP=107.241;RPPR=439.476;RPR=48;RUN=1;SAF=48;SAP=107.241;SAR=0;SRF=201;SRP=439.476;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:154:128,26:128:5146:26:1042:-47.7117,0,-416.628 0/1:31:21,10:21:845:10:392:-26.3024,0,-67.0305 0/1:64:52,12:52:2090:12:481:-24.3752,0,-169.01 dDocent_Contig_1448 18 . A G 2787.59 . AB=0.128514;ABP=301.479;AC=1;AF=0.166667;AN=6;AO=32;CIGAR=1X3M1X;DP=249;DPB=249;DPRA=0;EPP=72.4974;EPPR=263.587;GTI=0;LEN=1;MEANALT=2;MQM=60;MQMR=60;NS=3;NUMALT=2;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=1255;QR=4684;RO=120;RPL=0;RPP=72.4974;RPPR=263.587;RPR=32;RUN=1;SAF=32;SAP=72.4974;SAR=0;SRF=120;SRP=263.587;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|0:114:56,6,52:56:2191:6,52:241,2016:-148.728,-145.725,-324.055,0,-160.265,-164.471 0|1:57:25,18,14:25:976:18,14:699,552:-49.9033,0,-74.8076,-12.0137,-34.8119,-88.029 0|0:78:39,8,31:39:1517:8,31:315,1187:-85.6504,-71.476,-193.728,0,-98.7401,-115.321 dDocent_Contig_1449 7 . T A 781.735 . AB=0.449275;ABP=4.55236;AC=3;AF=0.5;AN=6;AO=31;CIGAR=2X1M1X1M1X;DP=69;DPB=69;DPRA=0;EPP=70.3259;EPPR=81.1833;GTI=0;LEN=1;MEANALT=1.66667;MQM=42;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=0;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=1203;QR=1395;RO=36;RPL=0;RPP=70.3259;RPPR=81.1833;RPR=31;RUN=1;SAF=31;SAP=70.3259;SAR=0;SRF=36;SRP=81.1833;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|1:27:15,11:15:574:11:428:-28.9785,0,-43.8337 0|1:18:5,13:5:195:13:504:-38.318,0,-12.5052 0|1:24:16,7:16:626:7:271:-16.3998,0,-49.3818 dDocent_Contig_1450 21 . T C 250.358 . AB=0.23913;ABP=30.2009;AC=1;AF=0.166667;AN=6;AO=11;CIGAR=1X;DP=61;DPB=61;DPRA=6.13333;EPP=26.8965;EPPR=111.584;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=445;QR=2034;RO=50;RPL=0;RPP=26.8965;RPPR=111.584;RPR=11;RUN=1;SAF=11;SAP=26.8965;SAR=0;SRF=50;SRP=111.584;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:46:35,11:35:1425:11:445:-26.5587,0,-114.648 0/0:7:7,0:7:285:0:0:0,-2.10721,-26.0244 0/0:8:8,0:8:324:0:0:0,-2.40824,-29.5288 dDocent_Contig_1451 83 . G A 155.327 . AB=0.150685;ABP=80.3802;AC=1;AF=0.166667;AN=6;AO=13;CIGAR=1X;DP=129;DPB=129;DPRA=4.10714;EPP=31.2394;EPPR=246.215;GTI=0;LEN=1;MEANALT=2;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=6.93889e-18;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=502;QR=4211;RO=112;RPL=13;RPP=31.2394;RPPR=246.215;RPR=0;RUN=1;SAF=13;SAP=31.2394;SAR=0;SRF=112;SRP=246.215;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:73:59,11:59:2226:11:424:-17.0556,0,-179.102 0/0:14:14,0:14:560:0:0:0,-4.21442,-50.7439 0/0:42:39,2:39:1425:2:78:0,-5.32841,-121.141 dDocent_Contig_1453 7 . T C 41.6457 . AB=0.142857;ABP=34.0313;AC=1;AF=0.166667;AN=6;AO=10;CIGAR=1X;DP=120;DPB=120;DPRA=5.5;EPP=24.725;EPPR=241.872;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=390;QR=4230;RO=110;RPL=0;RPP=24.725;RPPR=241.872;RPR=10;RUN=1;SAF=10;SAP=24.725;SAR=0;SRF=110;SRP=241.872;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:82:76,6:76:2928:6:234:0,-3.25335,-242.257 0/0:10:10,0:10:380:0:0:0,-3.0103,-34.5535 0/1:28:24,4:24:922:4:156:-5.98845,0,-74.8673 dDocent_Contig_1454 8 . A T 469.21 . AB=0.173709;ABP=199.982;AC=2;AF=0.333333;AN=6;AO=37;CIGAR=1M1X2M1X;DP=213;DPB=212.2;DPRA=0;EPP=83.3548;EPPR=328.731;GTI=0;LEN=1;MEANALT=3;MQM=32.9189;MQMR=57.3133;NS=3;NUMALT=3;ODDS=0;PAIRED=1;PAIREDR=0.986667;PAO=0;PQA=0;PQR=0;PRO=0;QA=1426;QR=5801;RO=150;RPL=0;RPP=83.3548;RPPR=328.731;RPR=37;RUN=1;SAF=37;SAP=83.3548;SAR=0;SRF=150;SRP=328.731;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|1:105:80,1,14,10:80:3102:1,14,10:15,545,383:-10.6524,-33.9592,-286.232,0,-251.785,-248.352,-3.97066,-255.8,-221.834,-253.572 0|1:43:25,3,14,1:25:963:3,14,1:45,531,39:-27.2745,-32.4797,-110.53,0,-76.7536,-74.8647,-31.5881,-108.227,-75.8721,-110.262 0|0:65:45,0,9,9:45:1736:0,9,9:0,350,342:-14.517,-28.0633,-170.432,-4.3572,-146.709,-143.999,0,-142.387,-118.665,-139.677 dDocent_Contig_1455 107 . N G 130.182 . AB=0;ABP=0;AC=2;AF=1;AN=2;AO=6;CIGAR=1X;DP=6;DPB=6;DPRA=0;EPP=16.0391;EPPR=0;GTI=0;LEN=1;MEANALT=1;MQM=24;MQMR=0;NS=1;NUMALT=1;ODDS=8.76405;PAIRED=1;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=210;QR=0;RO=0;RPL=0;RPP=16.0391;RPPR=0;RPR=6;RUN=1;SAF=0;SAP=16.0391;SAR=6;SRF=0;SRP=0;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 1/1:6:0,6:0:0:6:210:-13.0181,-1.80618,0 ./.:.:.:.:.:.:.:. ./.:.:.:.:.:.:.:. dDocent_Contig_1456 15 . A T 3717.19 . AB=0.0520833;ABP=170.304;AC=0;AF=0;AN=6;AO=5;CIGAR=5M1X2M1D13M;DP=329;DPB=316.5;DPRA=0;EPP=13.8677;EPPR=241.872;GTI=0;LEN=1;MEANALT=5;MQM=60;MQMR=60;NS=3;NUMALT=5;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=203;QR=4314;RO=110;RPL=0;RPP=13.8677;RPPR=241.872;RPR=5;RUN=1;SAF=5;SAP=13.8677;SAR=0;SRF=110;SRP=241.872;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|0:177:60,33,0,4,60,9:60:2356:33,0,4,60,9:1283,0,164,2313,319:-171.856,-84.4962,-268.346,-189.918,-278.28,-383.698,-176.38,-264.743,-370.161,-368.957,0,-88.3684,-193.788,-180.251,-175.726,-163.944,-252.307,-357.724,-344.187,-167.815,-355.015 0|0:56:23,4,0,3,23,0:23:902:4,0,3,23,0:162,0,115,894,0:-66.5416,-60.1041,-133.085,-73.4653,-134.289,-147.649,-64.0268,-124.851,-138.211,-137.308,0,-60.8329,-74.1938,-64.7555,-67.2701,-73.4653,-134.289,-147.649,-138.211,-74.1938,-147.649 0|0:96:27,15,5,0,47,1:27:1056:15,5,0,47,1:588,203,0,1792,40:-138.845,-98.6204,-180.93,-130.229,-168.702,-215.548,-146.973,-185.446,-217.053,-233.797,0,-38.4747,-70.0818,-86.8262,-72.6777,-143.677,-182.151,-213.758,-230.501,-83.5308,-230.2 dDocent_Contig_1457 7 . C T 5380.06 . AB=0.532578;ABP=6.26443;AC=3;AF=0.5;AN=6;AO=188;CIGAR=1X;DP=353;DPB=353;DPRA=0;EPP=411.247;EPPR=359.132;GTI=0;LEN=1;MEANALT=1.33333;MQM=59.9362;MQMR=60;NS=3;NUMALT=1;ODDS=2.77556e-17;PAIRED=0.638298;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=7213;QR=6259;RO=164;RPL=0;RPP=411.247;RPPR=359.132;RPR=188;RUN=1;SAF=188;SAP=411.247;SAR=0;SRF=164;SRP=359.132;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:192:87,104:87:3312:104:4017:-303.848,0,-240.453 0/1:59:39,20:39:1485:20:745:-49.6109,0,-116.167 0/1:102:38,64:38:1462:64:2451:-190.07,0,-101.151 dDocent_Contig_1459 33 . A C 15168.7 . AB=0.625628;ABP=112.13;AC=3;AF=0.5;AN=6;AO=498;CIGAR=1X;DP=796;DPB=796;DPRA=0;EPP=1084.4;EPPR=650.109;GTI=0;LEN=1;MEANALT=1;MQM=59.9759;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=19587;QR=11787;RO=298;RPL=0;RPP=1084.4;RPPR=650.109;RPR=498;RUN=1;SAF=498;SAP=1084.4;SAR=0;SRF=298;SRP=650.109;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:507:201,306:201:7940:306:12041:-930.242,0,-561.579 0/1:74:26,48:26:1044:48:1898:-148.744,0,-71.9754 0/1:215:71,144:71:2803:144:5648:-443.403,0,-187.655 dDocent_Contig_1460 1 . N A 290.954 . AB=0;ABP=0;AC=4;AF=1;AN=4;AO=10;CIGAR=1X;DP=10;DPB=10;DPRA=0;EPP=24.725;EPPR=0;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=0;NS=2;NUMALT=1;ODDS=0;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=315;QR=0;RO=0;RPL=0;RPP=24.725;RPPR=0;RPR=10;RUN=1;SAF=0;SAP=24.725;SAR=10;SRF=0;SRP=0;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 1/1:9:0,9:0:0:9:308:-28.0521,-2.70927,0 1/1:1:0,1:0:0:1:7:-0.699998,-0.30103,0 ./.:.:.:.:.:.:.:. dDocent_Contig_1461 13 . T C 3737.29 . AB=0.742138;ABP=83.983;AC=3;AF=0.5;AN=6;AO=118;CIGAR=1X;DP=159;DPB=159;DPRA=0;EPP=259.244;EPPR=92.0407;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=6.93889e-18;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=4738;QR=1611;RO=41;RPL=0;RPP=259.244;RPPR=92.0407;RPR=118;RUN=1;SAF=118;SAP=259.244;SAR=0;SRF=41;SRP=92.0407;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:79:18,61:18:708:61:2460:-197.754,0,-40.2688 0/1:33:6,27:6:239:27:1083:-87.823,0,-11.951 0/1:47:17,30:17:664:30:1195:-93.674,0,-45.9419 dDocent_Contig_1463 17 . T A 539.214 . AB=0.363636;ABP=11.8936;AC=3;AF=0.5;AN=6;AO=20;CIGAR=3M2X;DP=55;DPB=55.4;DPRA=0;EPP=46.4397;EPPR=74.6689;GTI=0;LEN=1;MEANALT=1.33333;MQM=60;MQMR=60;NS=3;NUMALT=2;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=786;QR=1323;RO=33;RPL=0;RPP=46.4397;RPPR=74.6689;RPR=20;RUN=1;SAF=20;SAP=46.4397;SAR=0;SRF=33;SRP=74.6689;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|1:28:12,0,16:12:486:0,16:0,634:-48.9623,-52.5747,-92.6532,0,-40.4793,-35.6628 0|1:10:7,0,3:7:278:0,3:0,122:-8.36219,-10.4694,-33.3491,0,-23.283,-22.3799 0|1:17:14,2,1:14:559:2,1:75,30:-1.97873,0,-45.5303,-3.8195,-43.7404,-49.5796 dDocent_Contig_1464 89 . C T 332.679 . AB=0.148289;ABP=285.591;AC=3;AF=0.5;AN=6;AO=39;CIGAR=1X;DP=263;DPB=263;DPRA=0;EPP=87.6977;EPPR=487.249;GTI=0;LEN=1;MEANALT=1.33333;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=1299;QR=7478;RO=223;RPL=39;RPP=87.6977;RPPR=487.249;RPR=0;RUN=1;SAF=39;SAP=87.6977;SAR=0;SRF=223;SRP=487.249;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:138:114,24:114:3774:24:815:-32.1213,0,-298.333 0/1:57:50,7:50:1696:7:228:-3.6806,0,-135.768 0/1:68:59,8:59:2008:8:256:-2.97081,0,-160.625 dDocent_Contig_1465 75 . G A 2791.25 . AB=0.230384;ABP=381.22;AC=3;AF=0.5;AN=6;AO=138;CIGAR=1X;DP=599;DPB=599;DPRA=0;EPP=302.673;EPPR=1004.06;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=5158;QR=17411;RO=461;RPL=138;RPP=302.673;RPPR=1004.06;RPR=0;RUN=1;SAF=138;SAP=302.673;SAR=0;SRF=461;SRP=1004.06;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:395:305,90:305:11626:90:3382:-185.588,0,-926.865 0/1:36:27,9:27:1020:9:345:-20.5686,0,-81.2538 0/1:168:129,39:129:4765:39:1431:-78.491,0,-378.347 dDocent_Contig_1466 31 . G A 39.843 . AB=0.0869565;ABP=173.424;AC=1;AF=0.166667;AN=6;AO=18;CIGAR=2M5D1X2M1X3M5I5M1X;DP=274;DPB=275.35;DPRA=0;EPP=42.0968;EPPR=485.077;GTI=0;LEN=1;MEANALT=5.66667;MQM=41.8889;MQMR=60;NS=3;NUMALT=3;ODDS=0;PAIRED=0.777778;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=593;QR=8631;RO=222;RPL=0;RPP=42.0968;RPPR=485.077;RPR=18;RUN=1;SAF=18;SAP=42.0968;SAR=0;SRF=222;SRP=485.077;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|1:115:81,10,10,7:81:3186:10,10,7:180,372,275:-5.50714,-19.438,-278.525,0,-251.675,-259.156,-7.24717,-258.916,-239.546,-267.301 0|0:50:45,0,4,0:45:1708:0,4,0:0,65,0:0,-13.5463,-153.776,-9.76922,-149.915,-148.711,-13.5463,-153.776,-149.915,-153.776 0|0:109:96,3,4,2:96:3737:3,4,2:55,156,69:0,-25.6897,-331.976,-16.0881,-320.122,-322.155,-23.2809,-327.276,-317.755,-329.911 dDocent_Contig_1468 98 . N G 87.7215 . AB=0;ABP=0;AC=2;AF=1;AN=2;AO=3;CIGAR=1X;DP=3;DPB=3;DPRA=0;EPP=9.52472;EPPR=0;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=0;NS=1;NUMALT=1;ODDS=6.68461;PAIRED=1;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=94;QR=0;RO=0;RPL=3;RPP=9.52472;RPPR=0;RPR=0;RUN=1;SAF=3;SAP=9.52472;SAR=0;SRF=0;SRP=0;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 1/1:3:0,3:0:0:3:94:-8.77161,-0.90309,0 ./.:.:.:.:.:.:.:. ./.:.:.:.:.:.:.:. dDocent_Contig_1469 73 . C T 181.622 . AB=0.181818;ABP=70.7208;AC=1;AF=0.166667;AN=6;AO=16;CIGAR=1X;DP=249;DPB=249;DPRA=6.05263;EPP=37.7539;EPPR=508.963;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=544;QR=8006;RO=233;RPL=16;RPP=37.7539;RPPR=508.963;RPR=0;RUN=1;SAF=16;SAP=37.7539;SAR=0;SRF=233;SRP=508.963;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:153:151,2:151:5253:2:68:0,-39.5997,-466.467 0/0:19:19,0:19:610:0:0:0,-5.71957,-55.1984 0/1:77:63,14:63:2143:14:476:-19.9861,0,-169.963 dDocent_Contig_1470 187 . A G 30.0703 . AB=0.142857;ABP=34.0313;AC=2;AF=0.333333;AN=6;AO=4;CIGAR=1X;DP=46;DPB=46;DPRA=0.777778;EPP=3.0103;EPPR=94.2121;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=1.73472e-18;PAIRED=0;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=157;QR=1655;RO=42;RPL=4;RPP=11.6962;RPPR=94.2121;RPR=0;RUN=1;SAF=2;SAP=3.0103;SAR=2;SRF=0;SRP=94.2121;SRR=42;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:18:16,2:16:642:2:82:-2.36114,0,-52.6952 0/1:10:8,2:8:288:2:75:-4.1085,0,-23.2403 0/0:18:18,0:18:725:0:0:0,-5.41854,-65.5732 dDocent_Contig_1471 28 . A C 2249.29 . AB=0.373272;ABP=33.2808;AC=3;AF=0.5;AN=6;AO=81;CIGAR=1X;DP=217;DPB=217;DPRA=0;EPP=178.9;EPPR=298.331;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=3277;QR=5408;RO=136;RPL=0;RPP=178.9;RPPR=298.331;RPR=81;RUN=1;SAF=81;SAP=178.9;SAR=0;SRF=136;SRP=298.331;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:154:93,61:93:3685:61:2472:-176.249,0,-285.324 0/1:22:14,8:14:557:8:326:-23.0872,0,-43.8501 0/1:41:29,12:29:1166:12:479:-31.1152,0,-92.8783 dDocent_Contig_1472 92 . T C 161.134 . AB=0.19403;ABP=57.4916;AC=3;AF=0.5;AN=6;AO=13;CIGAR=1X;DP=67;DPB=67;DPRA=0;EPP=31.2394;EPPR=120.27;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=59.2963;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=0.981481;PAO=0;PQA=0;PQR=0;PRO=0;QA=453;QR=1803;RO=54;RPL=13;RPP=31.2394;RPPR=120.27;RPR=0;RUN=1;SAF=13;SAP=31.2394;SAR=0;SRF=54;SRP=120.27;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:31:27,4:27:912:4:140:-3.613,0,-73.0582 0/1:10:8,2:8:271:2:69:-3.54236,0,-21.7105 0/1:26:19,7:19:620:7:244:-14.4733,0,-47.3399 dDocent_Contig_1473 7 . T C 70.8155 . AB=0.0961538;ABP=518.651;AC=1;AF=0.166667;AN=6;AO=36;CIGAR=1X;DP=572;DPB=572;DPRA=5.85556;EPP=81.1833;EPPR=1164.75;GTI=0;LEN=1;MEANALT=1.5;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=1350;QR=20360;RO=535;RPL=0;RPP=81.1833;RPPR=1164.75;RPR=36;RUN=1;SAF=36;SAP=81.1833;SAR=0;SRF=535;SRP=1164.75;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:364:328,35:328:12434:35:1311:-8.60443,0,-1008.9 0/0:45:45,0:45:1729:0:0:0,-13.5463,-155.867 0/0:163:162,1:162:6197:1:39:0,-45.1713,-553.77 dDocent_Contig_1474 7 . T A 2609.45 . AB=0.525424;ABP=4.00402;AC=3;AF=0.5;AN=6;AO=93;CIGAR=1X3M2D5M;DP=177;DPB=159.727;DPRA=0;EPP=204.957;EPPR=181.071;GTI=0;LEN=1;MEANALT=1.66667;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=0.978495;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=3539;QR=3210;RO=82;RPL=0;RPP=204.957;RPPR=181.071;RPR=93;RUN=1;SAF=93;SAP=204.957;SAR=0;SRF=82;SRP=181.071;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|1:127:49,76:49:1917:76:2886:-222.029,0,-134.867 0|1:18:11,7:11:431:7:270:-19.2468,0,-33.7267 0|1:32:22,10:22:862:10:383:-25.1925,0,-68.2645 dDocent_Contig_1475 64 . A T 254.111 . AB=0.323529;ABP=12.2071;AC=2;AF=0.333333;AN=6;AO=11;CIGAR=1X;DP=44;DPB=44;DPRA=1.7;EPP=26.8965;EPPR=74.6689;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=427;QR=1260;RO=33;RPL=11;RPP=26.8965;RPPR=74.6689;RPR=0;RUN=1;SAF=11;SAP=26.8965;SAR=0;SRF=33;SRP=74.6689;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:24:16,8:16:626:8:312:-21.2195,0,-49.4514 0/1:10:7,3:7:273:3:115:-7.71443,0,-21.9249 0/0:10:10,0:10:361:0:0:0,-3.0103,-32.827 dDocent_Contig_1476 37 . A C 682.438 . AB=0.179612;ABP=186.679;AC=3;AF=0.5;AN=6;AO=37;CIGAR=1X;DP=206;DPB=206;DPRA=0;EPP=83.3548;EPPR=369.989;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=1477;QR=6629;RO=169;RPL=0;RPP=83.3548;RPPR=369.989;RPR=37;RUN=1;SAF=37;SAP=83.3548;SAR=0;SRF=169;SRP=369.989;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:115:101,14:101:3968:14:564:-16.4824,0,-322.502 0/1:33:15,18:15:607:18:721:-55.2821,0,-45.0343 0/1:58:53,5:53:2054:5:192:-0.185706,0,-167.588 dDocent_Contig_1477 7 . T A 10992.2 . AB=0.310722;ABP=145.22;AC=6;AF=1;AN=6;AO=142;CIGAR=1X2M;DP=457;DPB=457;DPRA=0;EPP=311.359;EPPR=98.5551;GTI=0;LEN=1;MEANALT=2.33333;MQM=60;MQMR=60;NS=3;NUMALT=2;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=5424;QR=1675;RO=44;RPL=0;RPP=311.359;RPPR=98.5551;RPR=142;RUN=1;SAF=142;SAP=311.359;SAR=0;SRF=44;SRP=98.5551;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 1|1:255:22,153,79:22:839:153,79:5813,3021:-633.747,-179.073,-201.843,-392.47,0,-437.518 1|1:102:9,62,31:9:344:62,31:2330,1171:-249.575,-67.749,-77.3128,-156.3,0,-175.197 1|1:100:13,55,32:13:492:55,32:2095,1232:-221.416,-60.8288,-84.6049,-124.166,0,-154.87 dDocent_Contig_1478 20 . T A 92.0333 . AB=0.137255;ABP=61.2994;AC=1;AF=0.166667;AN=6;AO=7;CIGAR=2X14M1X2M;DP=187;DPB=188.263;DPRA=0.75;EPP=18.2106;EPPR=374.332;GTI=0;LEN=1;MEANALT=2;MQM=51;MQMR=26.5439;NS=3;NUMALT=2;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=284;QR=6757;RO=171;RPL=0;RPP=18.2106;RPPR=374.332;RPR=7;RUN=1;SAF=7;SAP=18.2106;SAR=0;SRF=171;SRP=374.332;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|0:107:103,0,0:103:4069:0,0:0,0:0,-31.0061,-209.903,-31.0061,-209.903,-209.903 0|0:29:27,0,0:27:1063:0,0:0,0:0,-8.12781,-60.7099,-8.12781,-60.7099,-60.7099 0|1:51:41,7,3:41:1625:7,3:284,63:-11.0272,0,-87.4056,-19.4772,-85.5606,-107.89 dDocent_Contig_1482 42 . T G 6237.43 . AB=0.820084;ABP=215.696;AC=3;AF=0.5;AN=6;AO=196;CIGAR=1X;DP=239;DPB=239;DPRA=0;EPP=428.619;EPPR=96.3836;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=7787;QR=1733;RO=43;RPL=0;RPP=428.619;RPPR=96.3836;RPR=196;RUN=1;SAF=196;SAP=428.619;SAR=0;SRF=43;SRP=96.3836;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:149:19,130:19:764:130:5155:-418.954,0,-24.2258 0/1:29:6,23:6:244:23:928:-75.0934,0,-13.609 0/1:61:18,43:18:725:43:1704:-135.218,0,-47.21 dDocent_Contig_1483 15 . T A 5685.69 . AB=0.847619;ABP=223.425;AC=3;AF=0.5;AN=6;AO=178;CIGAR=1X;DP=210;DPB=210;DPRA=0;EPP=389.532;EPPR=72.4974;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=7075;QR=1240;RO=32;RPL=0;RPP=389.532;RPPR=72.4974;RPR=178;RUN=1;SAF=178;SAP=389.532;SAR=0;SRF=32;SRP=72.4974;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:134:21,113:21:811:113:4486:-363.347,0,-32.959 0/1:24:6,18:6:235:18:719:-57.8122,0,-14.2948 0/1:52:5,47:5:194:47:1870:-152.846,0,-2.17821 dDocent_Contig_1484 9 . T C 2444.52 . AB=0.241379;ABP=104.096;AC=1;AF=0.166667;AN=6;AO=42;CIGAR=1X2M1X;DP=174;DPB=174;DPRA=0;EPP=94.2121;EPPR=109.412;GTI=0;LEN=1;MEANALT=3;MQM=59.881;MQMR=60;NS=3;NUMALT=3;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=1648;QR=1932;RO=49;RPL=0;RPP=94.2121;RPPR=109.412;RPR=42;RUN=1;SAF=42;SAP=94.2121;SAR=0;SRF=49;SRP=109.412;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 1|0:114:29,36,2,47:29:1142:36,2,47:1419,82,1832:-164.617,-56.6076,-139.722,-166.579,-143.791,-259.928,-22.7879,0,-109.97,-102.589 0|0:17:6,1,2,8:6:238:1,2,8:37,74,327:-25.2055,-23.9875,-43.2768,-20.9681,-37.5322,-39.9549,0,-16.5849,-13.5649,-17.2014 0|0:43:14,5,4,20:14:552:5,4,20:192,162,783:-60.1525,-48.6081,-92.5202,-51.0092,-80.6685,-95.2237,0,-29.6599,-32.0598,-39.3971 dDocent_Contig_1485 7 . C T 3017.83 . AB=0.625767;ABP=25.4044;AC=3;AF=0.5;AN=6;AO=102;CIGAR=1X2M1X1M1X;DP=163;DPB=163;DPRA=0;EPP=224.5;EPPR=133.299;GTI=0;LEN=1;MEANALT=1.33333;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=3951;QR=2310;RO=60;RPL=0;RPP=224.5;RPPR=133.299;RPR=102;RUN=1;SAF=102;SAP=224.5;SAR=0;SRF=60;SRP=133.299;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|1:97:44,53:44:1684:53:2047:-155.259,0,-122.613 0|1:33:6,27:6:234:27:1042:-84.1502,0,-11.4962 0|1:33:10,22:10:392:22:862:-67.8964,0,-25.6342 dDocent_Contig_1486 19 . A C 130.596 . AB=0.135135;ABP=88.5781;AC=2;AF=0.333333;AN=6;AO=12;CIGAR=1X;DP=110;DPB=110;DPRA=0;EPP=29.068;EPPR=215.815;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=482;QR=3816;RO=98;RPL=0;RPP=29.068;RPPR=215.815;RPR=12;RUN=1;SAF=12;SAP=29.068;SAR=0;SRF=98;SRP=215.815;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:61:52,9:52:2024:9:362:-14.5802,0,-164.001 0/1:13:12,1:12:483:1:41:-0.181177,0,-39.9086 0/0:36:34,2:34:1309:2:79:0,-3.33984,-110.57 dDocent_Contig_1488 63 . C T 445.998 . AB=0.195489;ABP=110.131;AC=2;AF=0.333333;AN=6;AO=26;CIGAR=1X;DP=153;DPB=153;DPRA=3.325;EPP=59.4686;EPPR=278.787;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=972;QR=4842;RO=127;RPL=26;RPP=59.4686;RPPR=278.787;RPR=0;RUN=1;SAF=26;SAP=59.4686;SAR=0;SRF=127;SRP=278.787;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:89:70,19:70:2696:19:716:-37.975,0,-216.004 0/0:20:20,0:20:783:0:0:0,-6.0206,-70.7953 0/1:44:37,7:37:1363:7:256:-10.1476,0,-109.719 dDocent_Contig_1489 18 . T C 6621.93 . AB=0.867647;ABP=162.677;AC=4;AF=0.666667;AN=6;AO=199;CIGAR=1X4M;DP=224;DPB=224;DPRA=0;EPP=435.133;EPPR=42.0968;GTI=0;LEN=1;MEANALT=1.66667;MQM=60;MQMR=60;NS=3;NUMALT=2;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=7955;QR=671;RO=18;RPL=0;RPP=435.133;RPPR=42.0968;RPR=199;RUN=1;SAF=199;SAP=435.133;SAR=0;SRF=18;SRP=42.0968;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|1:101:10,0,91:10:368:0,91:0,3608:-294.341,-297.352,-327.437,0,-30.4565,-3.06281 0|1:35:5,3,27:5:194:3,27:118,1086:-88.0015,-79.8008,-94.8356,0,-6.22807,-7.80891 1|1:88:3,4,81:3:109:4,81:155,3261:-283.361,-271.531,-279.227,-15.4925,-11.6367,0 dDocent_Contig_1490 36 . C T 2272.36 . AB=0.509804;ABP=3.13803;AC=3;AF=0.5;AN=6;AO=78;CIGAR=1X;DP=153;DPB=153;DPRA=0;EPP=172.385;EPPR=165.871;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=6.93889e-18;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=3088;QR=2975;RO=75;RPL=0;RPP=172.385;RPPR=165.871;RPR=78;RUN=1;SAF=78;SAP=172.385;SAR=0;SRF=75;SRP=165.871;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:101:47,54:47:1849:54:2132:-161.671,0,-136.223 0/1:17:9,8:9:360:8:314:-23.5076,0,-27.6461 0/1:35:19,16:19:766:16:642:-47.58,0,-58.7267 dDocent_Contig_1491 9 . C T 6534.92 . AB=0.619632;ABP=43.5356;AC=3;AF=0.5;AN=6;AO=202;CIGAR=2X;DP=326;DPB=326;DPRA=0;EPP=441.648;EPPR=139.813;GTI=0;LEN=1;MEANALT=2;MQM=59.995;MQMR=60;NS=3;NUMALT=2;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=7895;QR=2484;RO=63;RPL=0;RPP=441.648;RPPR=139.813;RPR=202;RUN=1;SAF=202;SAP=441.648;SAR=0;SRF=63;SRP=139.813;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 1|0:195:32,124,39:32:1267:124,39:4848,1533:-410.738,-21.7931,-88.749,-294.292,0,-386.835 1|0:42:7,26,9:7:276:26,9:1003,365:-87.3754,-7.13227,-22.0104,-59.6457,0,-79.6465 0|1:89:24,52,13:24:941:52,13:2044,518:-160.901,0,-61.7294,-125.787,-35.043,-199.259 dDocent_Contig_1492 61 . T A 573.318 . AB=0.252427;ABP=57.8452;AC=3;AF=0.5;AN=6;AO=26;CIGAR=1X;DP=103;DPB=103;DPRA=0;EPP=59.4686;EPPR=170.214;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=1017;QR=3062;RO=77;RPL=26;RPP=59.4686;RPPR=170.214;RPR=0;RUN=1;SAF=26;SAP=59.4686;SAR=0;SRF=77;SRP=170.214;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:77:57,20:57:2261:20:775:-46.8906,0,-180.483 0/1:11:10,1:10:408:1:41:-0.783237,0,-33.7693 0/1:15:10,5:10:393:5:201:-13.9554,0,-31.2066 dDocent_Contig_1493 29 . A G 1142.17 . AB=0.639344;ABP=13.2981;AC=3;AF=0.5;AN=6;AO=39;CIGAR=1X;DP=61;DPB=61;DPRA=0;EPP=87.6977;EPPR=50.7827;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=1523;QR=891;RO=22;RPL=0;RPP=87.6977;RPPR=50.7827;RPR=39;RUN=1;SAF=39;SAP=87.6977;SAR=0;SRF=22;SRP=50.7827;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:30:8,22:8:326:22:846:-67.4103,0,-20.679 0/1:8:2,6:2:81:6:244:-19.9306,0,-5.27749 0/1:23:12,11:12:484:11:433:-32.399,0,-36.9883 dDocent_Contig_1494 20 . G T 711.423 . AB=0.4;ABP=8.65613;AC=3;AF=0.5;AN=6;AO=26;CIGAR=1X;DP=65;DPB=65;DPRA=0;EPP=59.4686;EPPR=87.6977;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=0;PAIREDR=0.948718;PAO=0;PQA=0;PQR=0;PRO=0;QA=1057;QR=1590;RO=39;RPL=0;RPP=59.4686;RPPR=87.6977;RPR=26;RUN=1;SAF=26;SAP=59.4686;SAR=0;SRF=39;SRP=87.6977;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:36:22,14:22:897:14:569:-40.7148,0,-70.1974 0/1:11:9,2:9:367:2:82:-4.46835,0,-30.0839 0/1:18:8,10:8:326:10:406:-31.4815,0,-24.2913 dDocent_Contig_1495 15 . G A 7914.52 . 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T C 15099.3 . AB=0.372187;ABP=248.913;AC=3;AF=0.5;AN=6;AO=645;CIGAR=1X2M;DP=1733;DPB=1735.67;DPRA=0;EPP=1403.61;EPPR=1323.27;GTI=0;LEN=1;MEANALT=6.33333;MQM=46.1271;MQMR=57.5345;NS=3;NUMALT=3;ODDS=0;PAIRED=0.986047;PAIREDR=0.960526;PAO=0;PQA=0;PQR=0;PRO=0;QA=21720;QR=23848;RO=608;RPL=0;RPP=1403.61;RPPR=1323.27;RPR=645;RUN=1;SAF=645;SAP=1403.61;SAR=0;SRF=608;SRP=1323.27;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|1:811:310,129,307,42:310:12161:129,307,42:5040,10034,1692:-684.468,-404.314,-1332.51,0,-593.56,-874.603,-666.452,-1260.01,-855.687,-1620.83 0|1:399:122,91,136,36:122:4796:91,136,36:3506,4816,1397:-346.311,-115.338,-470.712,0,-115.076,-341.826,-276.807,-391.878,-276.539,-648.735 0|1:523:176,103,202,35:176:6891:103,202,35:4033,6870,1372:-484.669,-230.063,-747.139,0,-240.496,-487.262,-430.099,-670.595,-440.522,-967.64 dDocent_Contig_1497 18 . G A 3944.31 . AB=0.477352;ABP=4.28897;AC=3;AF=0.5;AN=6;AO=137;CIGAR=1X2M1X;DP=287;DPB=287;DPRA=0;EPP=300.502;EPPR=320.045;GTI=0;LEN=1;MEANALT=1.66667;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=1.38778e-17;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=5391;QR=5744;RO=146;RPL=0;RPP=300.502;RPPR=320.045;RPR=137;RUN=1;SAF=137;SAP=300.502;SAR=0;SRF=146;SRP=320.045;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|1:198:110,88:110:4324:88:3453:-251.234,0,-329.548 0|1:18:3,14:3:119:14:558:-45.0376,0,-5.57173 0|1:71:33,35:33:1301:35:1380:-103.683,0,-96.579 dDocent_Contig_1498 7 . T C 1286.53 . AB=0.25431;ABP=124.65;AC=3;AF=0.5;AN=6;AO=59;CIGAR=1X;DP=232;DPB=232;DPRA=0;EPP=131.127;EPPR=378.675;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=2256;QR=6607;RO=173;RPL=0;RPP=131.127;RPPR=378.675;RPR=59;RUN=1;SAF=59;SAP=131.127;SAR=0;SRF=173;SRP=378.675;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:150:106,44:106:4056:44:1684:-106.665,0,-319.973 0/1:18:13,5:13:502:5:184:-11.4993,0,-40.11 0/1:64:54,10:54:2049:10:388:-16.012,0,-165.376 dDocent_Contig_1499 49 . C A 2917.04 . AB=0.371237;ABP=46.0694;AC=3;AF=0.5;AN=6;AO=111;CIGAR=1X;DP=299;DPB=299;DPRA=0;EPP=244.044;EPPR=411.247;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=4294;QR=7471;RO=188;RPL=111;RPP=244.044;RPPR=411.247;RPR=0;RUN=1;SAF=111;SAP=244.044;SAR=0;SRF=188;SRP=411.247;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:143:91,52:91:3610:52:2060:-142.549,0,-281.877 0/1:51:19,32:19:733:32:1178:-90.9482,0,-50.9253 0/1:105:78,27:78:3128:27:1056:-63.729,0,-249.984 dDocent_Contig_1500 41 . G T 211.025 . AB=0.321429;ABP=10.7656;AC=3;AF=0.5;AN=6;AO=9;CIGAR=1X;DP=28;DPB=28;DPRA=0;EPP=22.5536;EPPR=44.2683;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=366;QR=753;RO=19;RPL=0;RPP=22.5536;RPPR=44.2683;RPR=9;RUN=1;SAF=9;SAP=22.5536;SAR=0;SRF=19;SRP=44.2683;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:10:9,1:9:362:1:41:-1.08427,0,-29.9328 0/1:8:5,3:5:190:3:123:-9.05655,0,-15.0549 0/1:10:5,5:5:201:5:202:-15.5516,0,-15.4602 dDocent_Contig_1501 15 . A G 7332.27 . AB=0.813559;ABP=204.552;AC=4;AF=0.666667;AN=6;AO=229;CIGAR=1X;DP=277;DPB=277;DPRA=0;EPP=500.277;EPPR=105.07;GTI=0;LEN=1;MEANALT=1.33333;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=1.38778e-17;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=9099;QR=1896;RO=47;RPL=0;RPP=500.277;RPPR=105.07;RPR=229;RUN=1;SAF=229;SAP=500.277;SAR=0;SRF=47;SRP=105.07;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:157:21,136:21:851:136:5382:-436.957,0,-29.6394 1/1:41:3,37:3:122:37:1481:-122.166,-1.06992,0 0/1:79:23,56:23:923:56:2236:-177.627,0,-59.5931 dDocent_Contig_1502 44 . T C 1989.65 . AB=0.51145;ABP=3.15949;AC=3;AF=0.5;AN=6;AO=67;CIGAR=5M1X7M;DP=131;DPB=116.615;DPRA=0;EPP=148.499;EPPR=89.8692;GTI=0;LEN=1;MEANALT=2.66667;MQM=60;MQMR=60;NS=3;NUMALT=3;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=2632;QR=1575;RO=40;RPL=0;RPP=148.499;RPPR=89.8692;RPR=67;RUN=1;SAF=67;SAP=148.499;SAR=0;SRF=40;SRP=89.8692;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|1:56:15,11,3,27:15:592:11,3,27:339,121,1066:-83.2362,-60.5959,-105.995,-77.775,-99.3313,-125.59,0,-21.5987,-38.7658,-40.6169 0|1:29:9,0,3,16:9:357:0,3,16:0,112,628:-48.9565,-51.6658,-81.0567,-42.5015,-71.8919,-70.9889,0,-29.4083,-20.2458,-24.5918 0|1:46:16,6,0,24:16:626:6,0,24:230,0,938:-72.2951,-58.2358,-107.899,-77.1116,-109.705,-128.582,0,-32.6001,-51.4752,-44.2505 dDocent_Contig_1503 51 . G T 180.558 . AB=0.208333;ABP=38.4777;AC=2;AF=0.333333;AN=6;AO=10;CIGAR=1X;DP=91;DPB=91;DPRA=0.55814;EPP=24.725;EPPR=178.9;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=392;QR=3071;RO=81;RPL=10;RPP=24.725;RPPR=178.9;RPR=0;RUN=1;SAF=10;SAP=24.725;SAR=0;SRF=81;SRP=178.9;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:43:43,0:43:1625:0:0:0,-12.9443,-146.491 0/1:22:17,5:17:635:5:191:-10.9344,0,-50.846 0/1:26:21,5:21:811:5:201:-10.6443,0,-65.4829 dDocent_Contig_1504 9 . G A 1946.72 . AB=0.418079;ABP=13.3279;AC=3;AF=0.5;AN=6;AO=74;CIGAR=1X;DP=177;DPB=177;DPRA=0;EPP=163.699;EPPR=226.672;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=2806;QR=3953;RO=103;RPL=0;RPP=163.699;RPPR=226.672;RPR=74;RUN=1;SAF=74;SAP=163.699;SAR=0;SRF=103;SRP=226.672;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:109:59,50:59:2266:50:1891:-137.621,0,-171.344 0/1:12:10,2:10:386:2:74:-3.41307,0,-31.4843 0/1:56:34,22:34:1301:22:841:-59.1549,0,-100.519 dDocent_Contig_1505 81 . A G 1652.09 . AB=0.504132;ABP=3.02825;AC=3;AF=0.5;AN=6;AO=61;CIGAR=1X;DP=121;DPB=121;DPRA=0;EPP=135.47;EPPR=133.299;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=2291;QR=2291;RO=60;RPL=61;RPP=135.47;RPPR=133.299;RPR=0;RUN=1;SAF=61;SAP=135.47;SAR=0;SRF=60;SRP=133.299;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:63:29,34:29:1117:34:1281:-96.6092,0,-81.8682 0/1:35:18,17:18:684:17:643:-47.6681,0,-51.3568 0/1:23:13,10:13:490:10:367:-26.4547,0,-37.5218 dDocent_Contig_1506 11 . T A 120.574 . AB=0.184211;ABP=35.9253;AC=1;AF=0.166667;AN=6;AO=8;CIGAR=1X;DP=79;DPB=79;DPRA=1.82353;EPP=20.3821;EPPR=157.185;GTI=0;LEN=1;MEANALT=1;MQM=59;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=0;PAIREDR=0.788732;PAO=0;PQA=0;PQR=0;PRO=0;QA=312;QR=2750;RO=71;RPL=0;RPP=20.3821;RPPR=157.185;RPR=8;RUN=1;SAF=8;SAP=20.3821;SAR=0;SRF=71;SRP=157.185;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:38:31,7:31:1224:7:274:-13.5802,0,-99.0021 0/0:24:23,1:23:881:1:38:0,-3.42816,-75.8009 0/0:17:17,0:17:645:0:0:0,-5.11751,-58.3785 dDocent_Contig_1507 54 . C A 56.5875 . AB=0.25;ABP=9.52472;AC=1;AF=0.166667;AN=6;AO=3;CIGAR=1X;DP=65;DPB=65;DPRA=0.45283;EPP=9.52472;EPPR=137.642;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=0;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=119;QR=2456;RO=62;RPL=3;RPP=9.52472;RPPR=137.642;RPR=0;RUN=1;SAF=3;SAP=9.52472;SAR=0;SRF=62;SRP=137.642;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:26:26,0:26:1042:0:0:0,-7.82678,-94.0731 0/1:12:9,3:9:356:3:119:-7.48265,0,-28.7856 0/0:27:27,0:27:1058:0:0:0,-8.12781,-95.5061 dDocent_Contig_1508 98 . N A 131.982 . AB=0;ABP=0;AC=4;AF=1;AN=4;AO=4;CIGAR=1X;DP=4;DPB=4;DPRA=0;EPP=11.6962;EPPR=0;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=0;NS=2;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=136;QR=0;RO=0;RPL=4;RPP=11.6962;RPPR=0;RPR=0;RUN=1;SAF=4;SAP=11.6962;SAR=0;SRF=0;SRP=0;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 1/1:3:0,3:0:0:3:105:-9.79616,-0.90309,0 ./.:.:.:.:.:.:.:. 1/1:1:0,1:0:0:1:31:-3.09945,-0.30103,0 dDocent_Contig_1509 88 . T G 19933.5 . AB=0.338926;ABP=607.408;AC=3;AF=0.5;AN=6;AO=909;CIGAR=1X;DP=2682;DPB=2682;DPRA=0;EPP=1976.88;EPPR=3627.2;GTI=0;LEN=1;MEANALT=2.66667;MQM=59.6007;MQMR=58.1811;NS=3;NUMALT=1;ODDS=2.22045e-16;PAIRED=0.684268;PAIREDR=0.751943;PAO=0;PQA=0;PQR=0;PRO=0;QA=30934;QR=57659;RO=1673;RPL=909;RPP=1976.88;RPPR=3635.88;RPR=0;RUN=1;SAF=909;SAP=1976.88;SAR=0;SRF=1672;SRP=3627.2;SRR=1;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:1423:912,459:912:31565:459:15672:-996.206,0,-2395.14 0/1:445:291,141:291:9949:141:4753:-297.543,0,-753.378 0/1:814:470,309:470:16145:309:10509:-705.12,0,-1189.88 dDocent_Contig_1510 8 . T A 4010.4 . AB=0.737778;ABP=113.504;AC=4;AF=0.666667;AN=6;AO=166;CIGAR=1X2M;DP=225;DPB=225;DPRA=0;EPP=217.332;EPPR=89.8692;GTI=0;LEN=1;MEANALT=2.66667;MQM=38.5964;MQMR=58.6;NS=3;NUMALT=3;ODDS=0;PAIRED=0.686747;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=5484;QR=1526;RO=40;RPL=0;RPP=363.475;RPPR=89.8692;RPR=166;RUN=1;SAF=147;SAP=217.332;SAR=19;SRF=40;SRP=89.8692;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|1:104:18,2,0,84:18:679:2,0,84:78,0,2717:-198.297,-199.288,-254.34,-203.715,-254.942,-259.37,0,-51.3106,-55.7291,-30.4426 1|1:39:5,8,2,24:5:193:8,2,24:311,77,765:-59.0993,-42.2639,-55.6919,-54.6925,-52.189,-69.9258,-2.44584,0,-12.3839,-11.0723 0|1:82:17,6,0,58:17:654:6,0,58:235,0,2002:-149.166,-144.213,-195.59,-154.284,-197.396,-207.468,0,-43.228,-53.2687,-35.809 dDocent_Contig_1511 9 . G A 16405.7 . AB=0.445319;ABP=36.0198;AC=3;AF=0.5;AN=6;AO=566;CIGAR=1X2M1X;DP=1271;DPB=1271.25;DPRA=0;EPP=1232.06;EPPR=246.846;GTI=0;LEN=1;MEANALT=8;MQM=20.0071;MQMR=25.5161;NS=3;NUMALT=2;ODDS=0;PAIRED=0;PAIREDR=0.129032;PAO=0;PQA=0;PQR=0;PRO=0;QA=22131;QR=4772;RO=124;RPL=0;RPP=1232.06;RPPR=272.273;RPR=566;RUN=1;SAF=566;SAP=1232.06;SAR=0;SRF=121;SRP=246.846;SRR=3;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 1|0:710:71,332,282:71:2741:332,282:12994,11114:-905.671,-436.589,-455.002,-372.101,0,-405.575 1|0:205:28,80,80:28:1086:80,80:3109,3155:-205.27,-94.645,-118.667,-70.929,0,-94.9567 1|0:356:25,154,171:25:945:154,171:6028,6703:-535.154,-322.136,-317.897,-178.427,0,-169.081 dDocent_Contig_1512 14 . G A 45.1348 . AB=0.147059;ABP=39.7976;AC=1;AF=0.166667;AN=6;AO=5;CIGAR=1X;DP=59;DPB=59;DPRA=2.72;EPP=13.8677;EPPR=120.27;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=1.73472e-18;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=177;QR=2140;RO=54;RPL=0;RPP=13.8677;RPPR=120.27;RPR=5;RUN=1;SAF=5;SAP=13.8677;SAR=0;SRF=54;SRP=120.27;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:34:29,5:29:1151:5:177:-6.03634,0,-93.6384 0/0:18:18,0:18:710:0:0:0,-5.41854,-64.2245 0/0:7:7,0:7:279:0:0:0,-2.10721,-25.4803 dDocent_Contig_1513 7 . A T 9119.45 . AB=0.205047;ABP=721.631;AC=4;AF=0.666667;AN=6;AO=195;CIGAR=1X4M1X;DP=951;DPB=975.333;DPRA=0;EPP=417.806;EPPR=70.3259;GTI=0;LEN=1;MEANALT=15.6667;MQM=22.5538;MQMR=60;NS=3;NUMALT=5;ODDS=0;PAIRED=0;PAIREDR=1;PAO=0.5;PQA=17.5;PQR=34;PRO=1.5;QA=4224;QR=1189;RO=31;RPL=0;RPP=426.447;RPPR=70.3259;RPR=195;RUN=1;SAF=194;SAP=417.806;SAR=1;SRF=31;SRP=70.3259;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 1|0:508:17,21,212,35,86,71:17:664:21,212,35,86,71:799,8116,1120,1777,2809:-493.601,-492.005,-540.277,-175.021,-222.911,-165.798,-426.549,-474.43,-157.45,-470.607,-387.22,-435.103,-118.143,-369.646,-415.925,-269.114,-316.997,0,-251.538,-212.208,-302.336 1|1:157:6,11,61,2,44,15:6:234:11,61,2,44,15:420,2332,56,957,565:-135.239,-135.421,-151.351,-43.6725,-61.3044,-44.5552,-133.147,-150.765,-59.0205,-151.787,-74.1023,-91.7286,0,-89.4487,-80.1009,-90.7425,-108.362,-16.6067,-106.088,-47.0395,-105.47 1|0:286:8,4,137,1,65,37:8:291:4,137,1,65,37:153,5276,5,1490,1435:-288.628,-289.724,-312.288,-94.1552,-116.615,-76.6834,-291.092,-313.547,-117.981,-314.559,-192.624,-215.081,-19.5518,-216.448,-196.825,-173.128,-195.585,0,-196.952,-98.4784,-185.759 dDocent_Contig_1514 54 . T C 295.629 . AB=0.191011;ABP=76.816;AC=3;AF=0.5;AN=6;AO=17;CIGAR=1X;DP=89;DPB=89;DPRA=0;EPP=39.9253;EPPR=159.356;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=675;QR=2822;RO=72;RPL=17;RPP=39.9253;RPPR=159.356;RPR=0;RUN=1;SAF=17;SAP=39.9253;SAR=0;SRF=72;SRP=159.356;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:37:30,7:30:1185:7:273:-13.7985,0,-95.7951 0/1:17:14,3:14:526:3:120:-6.07039,0,-42.5485 0/1:35:28,7:28:1111:7:282:-15.2169,0,-89.7451 dDocent_Contig_1515 17 . T C 2653.66 . AB=0.756757;ABP=66.5699;AC=3;AF=0.5;AN=6;AO=84;CIGAR=1X;DP=111;DPB=111;DPRA=0;EPP=185.414;EPPR=61.6401;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=0.880952;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=3357;QR=1065;RO=27;RPL=0;RPP=185.414;RPPR=61.6401;RPR=84;RUN=1;SAF=84;SAP=185.414;SAR=0;SRF=27;SRP=61.6401;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:66:15,51:15:592:51:2036:-163.56,0,-33.7506 0/1:23:10,13:10:396:13:515:-39.7743,0,-29.0752 0/1:22:2,20:2:77:20:806:-66.2342,0,-0.686482 dDocent_Contig_1516 65 . A G 227.091 . AB=0.22;ABP=37.059;AC=2;AF=0.333333;AN=6;AO=11;CIGAR=1X;DP=55;DPB=55;DPRA=5;EPP=26.8965;EPPR=98.5551;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=446;QR=1719;RO=44;RPL=11;RPP=26.8965;RPPR=98.5551;RPR=0;RUN=1;SAF=11;SAP=26.8965;SAR=0;SRF=44;SRP=98.5551;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:42:32,10:32:1243:10:405:-24.1668,0,-99.4963 0/0:5:5,0:5:201:0:0:0,-1.50515,-18.4705 0/1:8:7,1:7:275:1:41:-1.68633,0,-22.7083 dDocent_Contig_1517 66 . A G 1752.36 . AB=0.754386;ABP=35.049;AC=4;AF=0.666667;AN=6;AO=56;CIGAR=1X;DP=70;DPB=70;DPRA=0;EPP=124.613;EPPR=33.4109;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=0.892857;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=2166;QR=562;RO=14;RPL=56;RPP=124.613;RPPR=33.4109;RPR=0;RUN=1;SAF=56;SAP=124.613;SAR=0;SRF=14;SRP=33.4109;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:36:5,31:5:197:31:1198:-97.2669,0,-7.26771 1/1:13:0,13:0:0:13:508:-46.0666,-3.91339,0 0/1:21:9,12:9:365:12:460:-35.4257,0,-26.8934 dDocent_Contig_1518 8 . A T 257.919 . AB=0.202703;ABP=59.8207;AC=3;AF=0.5;AN=6;AO=15;CIGAR=1X;DP=74;DPB=74;DPRA=0;EPP=35.5824;EPPR=131.127;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=6.93889e-18;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=583;QR=2240;RO=59;RPL=0;RPP=35.5824;RPPR=131.127;RPR=15;RUN=1;SAF=15;SAP=35.5824;SAR=0;SRF=59;SRP=131.127;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:36:29,7:29:1099:7:273:-14.1009,0,-88.3756 0/1:13:11,2:11:409:2:76:-3.30128,0,-33.2395 0/1:25:19,6:19:732:6:234:-13.9054,0,-58.6852 dDocent_Contig_1519 51 . T G 224.803 . AB=0.391304;ABP=5.3706;AC=1;AF=0.166667;AN=6;AO=10;CIGAR=1X;DP=43;DPB=43;DPRA=3.8;EPP=24.725;EPPR=74.6689;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=382;QR=1278;RO=33;RPL=10;RPP=24.725;RPPR=74.6689;RPR=0;RUN=1;SAF=10;SAP=24.725;SAR=0;SRF=33;SRP=74.6689;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:15:14,1:14:558:1:39:0,-0.618885,-46.6652 0/0:5:5,0:5:181:0:0:0,-1.50515,-16.641 0/1:23:14,9:14:539:9:343:-24.3039,0,-41.9306 dDocent_Contig_1520 23 . A G 2013.04 . AB=0.451613;ABP=6.16244;AC=3;AF=0.5;AN=6;AO=70;CIGAR=1X;DP=155;DPB=155;DPRA=0;EPP=155.013;EPPR=176.728;GTI=0;LEN=1;MEANALT=2;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=2803;QR=3210;RO=80;RPL=0;RPP=155.013;RPPR=176.728;RPR=70;RUN=1;SAF=70;SAP=155.013;SAR=0;SRF=80;SRP=176.728;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:82:40,40:40:1600:40:1595:-119.297,0,-119.745 0/1:28:18,9:18:728:9:368:-24.966,0,-57.3272 0/1:45:22,21:22:882:21:840:-62.5641,0,-66.3456 dDocent_Contig_1521 11 . C T 239.531 . AB=0.22449;ABP=35.3165;AC=1;AF=0.166667;AN=6;AO=11;CIGAR=1X;DP=81;DPB=81;DPRA=3.0625;EPP=26.8965;EPPR=155.013;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=443;QR=2748;RO=70;RPL=0;RPP=26.8965;RPPR=155.013;RPR=11;RUN=1;SAF=11;SAP=26.8965;SAR=0;SRF=70;SRP=155.013;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:49:38,11:38:1489:11:443:-25.476,0,-119.513 0/0:17:17,0:17:658:0:0:0,-5.11751,-59.5527 0/0:15:15,0:15:601:0:0:0,-4.51545,-54.4299 dDocent_Contig_1522 59 . G C 722.589 . AB=0.260163;ABP=64.4647;AC=2;AF=0.333333;AN=6;AO=35;CIGAR=1X;DP=167;DPB=167;DPRA=0;EPP=79.0118;EPPR=289.645;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=1369;QR=5212;RO=132;RPL=35;RPP=79.0118;RPPR=289.645;RPR=0;RUN=1;SAF=35;SAP=79.0118;SAR=0;SRF=132;SRP=289.645;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:90:65,25:65:2587:25:962:-59.7817,0,-205.87 0/1:33:26,7:26:1042:7:284:-16,0,-84.1386 0/0:44:41,3:41:1583:3:123:0,-1.78053,-131.238 dDocent_Contig_1523 114 . G A 101.291 . AB=0.26087;ABP=14.4341;AC=1;AF=0.166667;AN=6;AO=8;CIGAR=1X;DP=92;DPB=92;DPRA=0;EPP=20.3821;EPPR=185.414;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=0.952381;PAO=0;PQA=0;PQR=0;PRO=0;QA=276;QR=2913;RO=84;RPL=0;RPP=20.3821;RPPR=185.414;RPR=8;RUN=1;SAF=0;SAP=20.3821;SAR=8;SRF=0;SRP=185.414;SRR=84;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:50:49,1:49:1704:1:35:0,-11.5529,-150.151 0/1:23:17,6:17:595:6:206:-11.953,0,-46.9551 0/0:19:18,1:18:614:1:35:0,-2.22094,-52.0828 dDocent_Contig_1524 107 . N T 132.248 . AB=0;ABP=0;AC=4;AF=1;AN=4;AO=4;CIGAR=1X;DP=4;DPB=4;DPRA=0;EPP=11.6962;EPPR=0;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=0;NS=2;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=136;QR=0;RO=0;RPL=0;RPP=11.6962;RPPR=0;RPR=4;RUN=1;SAF=0;SAP=11.6962;SAR=4;SRF=0;SRP=0;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 1/1:3:0,3:0:0:3:101:-9.42373,-0.90309,0 1/1:1:0,1:0:0:1:35:-3.49863,-0.30103,0 ./.:.:.:.:.:.:.:. dDocent_Contig_1525 9 . G C 1267.09 . AB=0.229323;ABP=172.287;AC=3;AF=0.5;AN=6;AO=61;CIGAR=1X;DP=266;DPB=266;DPRA=0;EPP=135.47;EPPR=448.162;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=1.38778e-17;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=2348;QR=7812;RO=205;RPL=0;RPP=135.47;RPPR=448.162;RPR=61;RUN=1;SAF=61;SAP=135.47;SAR=0;SRF=205;SRP=448.162;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:136:92,44:92:3525:44:1685:-110.969,0,-276.435 0/1:49:43,6:43:1612:6:234:-6.68063,0,-130.596 0/1:81:70,11:70:2675:11:429:-14.5822,0,-216.554 dDocent_Contig_1526 10 . T C 1272.32 . AB=0.280423;ABP=82.1599;AC=3;AF=0.5;AN=6;AO=53;CIGAR=1X;DP=189;DPB=189;DPRA=0;EPP=118.098;EPPR=296.159;GTI=0;LEN=1;MEANALT=1.33333;MQM=59.434;MQMR=59.6889;NS=3;NUMALT=1;ODDS=0;PAIRED=0;PAIREDR=0.948148;PAO=0;PQA=0;PQR=0;PRO=0;QA=2098;QR=5132;RO=135;RPL=0;RPP=118.098;RPPR=296.159;RPR=53;RUN=1;SAF=53;SAP=118.098;SAR=0;SRF=135;SRP=296.159;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:99:68,30:68:2591:30:1179:-76.4397,0,-203.455 0/1:37:27,10:27:1017:10:393:-24.5839,0,-80.6867 0/1:53:40,13:40:1524:13:526:-31.7317,0,-121.333 dDocent_Contig_1527 22 . G T 553.419 . AB=0.258621;ABP=61.7149;AC=3;AF=0.5;AN=6;AO=30;CIGAR=1X1M1X3M1X;DP=116;DPB=116;DPRA=0;EPP=68.1545;EPPR=185.414;GTI=0;LEN=1;MEANALT=1.66667;MQM=53.4667;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=0.833333;PAIREDR=0.952381;PAO=0;PQA=0;PQR=0;PRO=0;QA=1138;QR=3267;RO=84;RPL=0;RPP=68.1545;RPPR=185.414;RPR=30;RUN=1;SAF=30;SAP=68.1545;SAR=0;SRF=84;SRP=185.414;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|1:74:55,18:55:2158:18:679:-34.5275,0,-172.15 0|1:14:9,5:9:354:5:189:-10.1986,0,-28.008 0|1:28:20,7:20:755:7:270:-16.1386,0,-59.738 dDocent_Contig_1528 10 . G A 1000.08 . AB=0.0660377;ABP=176.4;AC=0;AF=0;AN=6;AO=7;CIGAR=2X4M;DP=174;DPB=174;DPRA=0;EPP=18.2106;EPPR=222.329;GTI=0;LEN=1;MEANALT=3;MQM=60;MQMR=60;NS=3;NUMALT=3;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=270;QR=3880;RO=101;RPL=0;RPP=18.2106;RPPR=222.329;RPR=7;RUN=1;SAF=7;SAP=18.2106;SAR=0;SRF=101;SRP=222.329;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|0:106:68,14,7,17:68:2630:14,7,17:526,270,639:-31.0449,-8.42163,-220.244,-29.3407,-202.286,-243.271,0,-172.943,-193.862,-210.916 0|0:34:16,5,0,13:16:601:5,0,13:193,0,522:-38.0376,-27.0073,-74.7218,-42.854,-76.2269,-92.0775,0,-33.3721,-49.2252,-45.3118 0|0:34:17,4,0,13:17:649:4,0,13:153,0,506:-36.4487,-29.0124,-81.0496,-41.5662,-82.2537,-94.8087,0,-40.6893,-53.2448,-49.3314 dDocent_Contig_1529 107 . N A 201.985 . AB=0;ABP=0;AC=4;AF=1;AN=4;AO=8;CIGAR=1X;DP=8;DPB=8;DPRA=0;EPP=20.3821;EPPR=0;GTI=0;LEN=1;MEANALT=1;MQM=49.625;MQMR=0;NS=2;NUMALT=1;ODDS=0;PAIRED=0.25;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=216;QR=0;RO=0;RPL=0;RPP=20.3821;RPPR=0;RPR=8;RUN=1;SAF=0;SAP=20.3821;SAR=8;SRF=0;SRP=0;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 1/1:5:0,5:0:0:5:129:-11.8547,-1.50515,0 ./.:.:.:.:.:.:.:. 1/1:3:0,3:0:0:3:87:-8.04248,-0.90309,0 dDocent_Contig_1530 26 . T A 595.954 . AB=0.275862;ABP=28.3192;AC=4;AF=0.666667;AN=6;AO=22;CIGAR=1X;DP=64;DPB=64;DPRA=0;EPP=50.7827;EPPR=94.2121;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=59.8333;NS=3;NUMALT=1;ODDS=3.46945e-18;PAIRED=1;PAIREDR=0.952381;PAO=0;PQA=0;PQR=0;PRO=0;QA=883;QR=1670;RO=42;RPL=0;RPP=50.7827;RPPR=94.2121;RPR=22;RUN=1;SAF=22;SAP=50.7827;SAR=0;SRF=42;SRP=94.2121;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:46:33,13:33:1311:13:523:-33.5703,0,-104.399 1/1:6:0,6:0:0:6:242:-22.1575,-1.80618,0 0/1:12:9,3:9:359:3:118:-7.39036,0,-29.0605 dDocent_Contig_1531 7 . T C 5939.79 . AB=0.659306;ABP=72.8879;AC=3;AF=0.5;AN=6;AO=209;CIGAR=1X2M;DP=317;DPB=317;DPRA=0;EPP=456.848;EPPR=189.757;GTI=0;LEN=1;MEANALT=2.66667;MQM=51.244;MQMR=59.0233;NS=3;NUMALT=2;ODDS=0;PAIRED=0.842105;PAIREDR=0.860465;PAO=0;PQA=0;PQR=0;PRO=0;QA=7826;QR=3222;RO=86;RPL=0;RPP=456.848;RPPR=189.757;RPR=209;RUN=1;SAF=209;SAP=456.848;SAR=0;SRF=86;SRP=189.757;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|1:148:44,2,100:44:1647:2,100:72,3742:-284.72,-292.091,-424.268,0,-126.967,-102.738 0|1:65:17,4,44:17:631:4,44:152,1665:-129.431,-123.638,-174.067,0,-40.7543,-38.4159 0|1:104:25,13,65:25:944:13,65:488,2419:-185.35,-157.012,-230.476,0,-41.5496,-57.841 dDocent_Contig_1533 42 . A G 403.679 . AB=0.2375;ABP=50.8913;AC=3;AF=0.5;AN=6;AO=19;CIGAR=1X;DP=80;DPB=80;DPRA=0;EPP=44.2683;EPPR=135.47;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=0;PAIREDR=0.803279;PAO=0;PQA=0;PQR=0;PRO=0;QA=765;QR=2378;RO=61;RPL=19;RPP=44.2683;RPPR=135.47;RPR=0;RUN=1;SAF=19;SAP=44.2683;SAR=0;SRF=61;SRP=135.47;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:21:14,7:14:549:7:277:-18.9747,0,-43.4287 0/1:15:10,5:10:393:5:202:-14.0466,0,-31.2086 0/1:44:37,7:37:1436:7:286:-12.8695,0,-116.249 dDocent_Contig_1534 107 . N C 234.94 . AB=0;ABP=0;AC=6;AF=1;AN=6;AO=9;CIGAR=1X;DP=9;DPB=9;DPRA=0;EPP=22.5536;EPPR=0;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=0;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=245;QR=0;RO=0;RPL=0;RPP=22.5536;RPPR=0;RPR=9;RUN=1;SAF=0;SAP=22.5536;SAR=9;SRF=0;SRP=0;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 1/1:4:0,4:0:0:4:99:-9.1556,-1.20412,0 1/1:2:0,2:0:0:2:68:-6.45793,-0.60206,0 1/1:3:0,3:0:0:3:78:-7.27796,-0.90309,0 dDocent_Contig_1535 9 . A G 1412.86 . AB=0.229358;ABP=211.053;AC=3;AF=0.5;AN=6;AO=75;CIGAR=1X;DP=327;DPB=327;DPRA=0;EPP=165.871;EPPR=550.221;GTI=0;LEN=1;MEANALT=1;MQM=40.8533;MQMR=54.6508;NS=3;NUMALT=1;ODDS=0;PAIRED=0;PAIREDR=0.376984;PAO=0;PQA=0;PQR=0;PRO=0;QA=2857;QR=9565;RO=252;RPL=0;RPP=165.871;RPPR=550.221;RPR=75;RUN=1;SAF=75;SAP=165.871;SAR=0;SRF=252;SRP=550.221;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:156:117,39:117:4402:39:1494:-80.788,0,-346.784 0/1:72:50,22:50:1921:22:824:-49.4395,0,-150.348 0/1:99:85,14:85:3242:14:539:-16.5817,0,-260.408 dDocent_Contig_1536 72 . G C 168.331 . AB=0.177215;ABP=74.504;AC=3;AF=0.5;AN=6;AO=14;CIGAR=1X;DP=79;DPB=79;DPRA=0;EPP=33.4109;EPPR=144.156;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=501;QR=2145;RO=65;RPL=14;RPP=33.4109;RPPR=144.156;RPR=0;RUN=1;SAF=14;SAP=33.4109;SAR=0;SRF=65;SRP=144.156;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:38:31,7:31:1042:7:253:-11.6785,0,-82.6364 0/1:16:13,3:13:419:3:108:-5.25845,0,-33.2008 0/1:25:21,4:21:684:4:140:-5.41883,0,-54.3386 dDocent_Contig_1537 31 . G T 114.602 . AB=0.130952;ABP=102.381;AC=2;AF=0.333333;AN=6;AO=11;CIGAR=1X;DP=90;DPB=90;DPRA=7;EPP=26.8965;EPPR=174.557;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=439;QR=3152;RO=79;RPL=0;RPP=26.8965;RPPR=174.557;RPR=11;RUN=1;SAF=11;SAP=26.8965;SAR=0;SRF=79;SRP=174.557;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:59:51,8:51:2036:8:317:-11.1342,0,-165.662 0/0:6:6,0:6:241:0:0:0,-1.80618,-22.0652 0/1:25:22,3:22:875:3:122:-3.84674,0,-71.5369 dDocent_Contig_1538 107 . N T 1855.6 . AB=0.833333;ABP=26.1727;AC=6;AF=1;AN=6;AO=108;CIGAR=1X2M;DP=124;DPB=124;DPRA=0;EPP=228.924;EPPR=0;GTI=0;LEN=1;MEANALT=2.33333;MQM=22.6667;MQMR=0;NS=3;NUMALT=2;ODDS=0;PAIRED=0.12963;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=2339;QR=0;RO=0;RPL=0;RPP=237.529;RPPR=0;RPR=108;RUN=1;SAF=1;SAP=228.924;SAR=107;SRF=0;SRP=0;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 1|1:68:0,8,59:0:0:8,59:249,1176:-91.1425,-78.5878,-76.1796,-17.7608,-5.22108,0 1|1:32:0,3,29:0:0:3,29:104,727:-58.8099,-53.6225,-52.7194,-8.72987,-3.31692,0 1|1:24:0,4,20:0:0:4,20:137,436:-37.0449,-28.7906,-27.5865,-8.50509,0,-2.48449 dDocent_Contig_1539 43 . G A 559.498 . AB=0.338028;ABP=19.1893;AC=3;AF=0.5;AN=6;AO=24;CIGAR=1X;DP=71;DPB=71;DPRA=0;EPP=55.1256;EPPR=105.07;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=909;QR=1819;RO=47;RPL=0;RPP=55.1256;RPPR=105.07;RPR=24;RUN=1;SAF=24;SAP=55.1256;SAR=0;SRF=47;SRP=105.07;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:35:25,10:25:957:10:374:-23.462,0,-75.8918 0/1:9:6,3:6:242:3:106:-7.17584,0,-19.4477 0/1:27:16,11:16:620:11:429:-30.8349,0,-48 dDocent_Contig_1540 26 . G A 55.8914 . AB=0.123077;ABP=83.2212;AC=1;AF=0.166667;AN=6;AO=9;CIGAR=1X;DP=227;DPB=227;DPRA=2.13953;EPP=22.5536;EPPR=476.391;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=3.46945e-18;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=331;QR=8377;RO=218;RPL=0;RPP=22.5536;RPPR=476.391;RPR=9;RUN=1;SAF=9;SAP=22.5536;SAR=0;SRF=218;SRP=476.391;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:119:118,1:118:4627:1:35:0,-32.3239,-412.871 0/0:43:43,0:43:1622:0:0:0,-12.9443,-146.203 0/1:65:57,8:57:2128:8:296:-7.41305,0,-172.172 dDocent_Contig_1541 31 . T C 7411.99 . AB=0.777409;ABP=204.207;AC=3;AF=0.5;AN=6;AO=234;CIGAR=1X;DP=301;DPB=301;DPRA=0;EPP=511.135;EPPR=148.499;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=9288;QR=2541;RO=67;RPL=0;RPP=511.135;RPPR=148.499;RPR=234;RUN=1;SAF=234;SAP=511.135;SAR=0;SRF=67;SRP=148.499;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:167:26,141:26:963:141:5581:-451.827,0,-36.6931 0/1:44:4,40:4:152:40:1601:-131.074,0,-0.803902 0/1:90:37,53:37:1426:53:2106:-162.615,0,-101.51 dDocent_Contig_1542 28 . C A 377.35 . AB=0.375;ABP=8.43898;AC=3;AF=0.5;AN=6;AO=15;CIGAR=1X;DP=40;DPB=40;DPRA=0;EPP=35.5824;EPPR=57.2971;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=601;QR=1001;RO=25;RPL=0;RPP=35.5824;RPPR=57.2971;RPR=15;RUN=1;SAF=15;SAP=35.5824;SAR=0;SRF=25;SRP=57.2971;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:22:11,11:11:438:11:443:-33.6032,0,-33.1501 0/1:6:5,1:5:196:1:41:-2.28839,0,-16.2074 0/1:12:9,3:9:367:3:117:-7.29747,0,-29.7829 dDocent_Contig_1543 21 . G A 72.1808 . AB=0.1125;ABP=107.35;AC=1;AF=0.166667;AN=6;AO=18;CIGAR=1X;DP=323;DPB=323;DPRA=0;EPP=42.0968;EPPR=665.309;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=0.996721;PAO=0;PQA=0;PQR=0;PRO=0;QA=721;QR=12049;RO=305;RPL=0;RPP=42.0968;RPPR=665.309;RPR=18;RUN=1;SAF=18;SAP=42.0968;SAR=0;SRF=305;SRP=665.309;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:135:130,5:130:5107:5:202:0,-22.0772,-440.946 0/1:80:71,9:71:2812:9:364:-9.04198,0,-229.108 0/0:108:104,4:104:4130:4:155:0,-18.1869,-357.355 dDocent_Contig_1544 98 . N C 60.7964 . AB=0;ABP=0;AC=2;AF=1;AN=2;AO=2;CIGAR=1X;DP=2;DPB=2;DPRA=0;EPP=7.35324;EPPR=0;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=0;NS=1;NUMALT=1;ODDS=5.99146;PAIRED=1;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=64;QR=0;RO=0;RPL=2;RPP=7.35324;RPPR=0;RPR=0;RUN=1;SAF=2;SAP=7.35324;SAR=0;SRF=0;SRP=0;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 1/1:2:0,2:0:0:2:64:-6.07855,-0.60206,0 ./.:.:.:.:.:.:.:. ./.:.:.:.:.:.:.:. dDocent_Contig_1545 98 . N T 471.287 . AB=0;ABP=0;AC=6;AF=1;AN=6;AO=16;CIGAR=2X9I3X;DP=17;DPB=55.6;DPRA=0;EPP=37.7539;EPPR=0;GTI=0;LEN=1;MEANALT=1.33333;MQM=36;MQMR=0;NS=3;NUMALT=1;ODDS=0;PAIRED=0;PAIREDR=0;PAO=23;PQA=846;PQR=0;PRO=0;QA=568;QR=0;RO=0;RPL=16;RPP=37.7539;RPPR=0;RPR=0;RUN=1;SAF=0;SAP=37.7539;SAR=16;SRF=0;SRP=0;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 1|1:2:0,2:0:0:2:73:-5.69486,-0.60206,0 1|1:3:0,2:0:0:2:72:-5.2295,-0.60206,0 1|1:12:0,12:0:0:12:423:-35.7265,-3.61236,0 dDocent_Contig_1546 8 . G A 1851.89 . AB=0.316;ABP=76.5277;AC=3;AF=0.5;AN=6;AO=79;CIGAR=1X;DP=250;DPB=250;DPRA=0;EPP=174.557;EPPR=365.697;GTI=0;LEN=1;MEANALT=1;MQM=46.1646;MQMR=56.2281;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=0.964912;PAO=0;PQA=0;PQR=0;PRO=0;QA=3040;QR=6507;RO=171;RPL=0;RPP=174.557;RPPR=374.332;RPR=79;RUN=1;SAF=79;SAP=174.557;SAR=0;SRF=170;SRP=365.697;SRR=1;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:150:104,46:104:3969:46:1763:-109.447,0,-306.148 0/1:19:11,8:11:417:8:309:-20.9442,0,-28.8976 0/1:81:56,25:56:2121:25:968:-60.3206,0,-166.589 dDocent_Contig_1547 16 . C T 2117.14 . AB=0.486842;ABP=3.23888;AC=3;AF=0.5;AN=6;AO=74;CIGAR=1X3M1X;DP=152;DPB=152;DPRA=0;EPP=163.699;EPPR=172.385;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=2912;QR=3025;RO=78;RPL=0;RPP=163.699;RPPR=172.385;RPR=74;RUN=1;SAF=74;SAP=163.699;SAR=0;SRF=78;SRP=172.385;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|1:84:49,35:49:1909:35:1383:-99.4503,0,-146.752 0|1:26:11,15:11:422:15:582:-44.8911,0,-30.503 0|1:42:18,24:18:694:24:947:-72.8951,0,-50.1459 dDocent_Contig_1548 14 . A C 2217.05 . AB=0.491803;ABP=3.0815;AC=6;AF=1;AN=6;AO=60;CIGAR=3X1M1X4M;DP=122;DPB=122;DPRA=0;EPP=133.299;EPPR=48.6112;GTI=0;LEN=1;MEANALT=3;MQM=60;MQMR=60;NS=3;NUMALT=4;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=2344;QR=821;RO=21;RPL=0;RPP=133.299;RPPR=48.6112;RPR=60;RUN=1;SAF=60;SAP=133.299;SAR=0;SRF=21;SRP=48.6112;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 1|1:68:12,0,0,15,41:12:473:0,0,15,41:0,0,574,1609:-136.882,-140.495,-179.41,-140.495,-179.41,-179.41,-93.4063,-132.321,-132.321,-127.806,-8.16522,-47.0847,-47.0847,0,-34.7425 1|1:26:2,3,3,10,8:2:77:3,3,10,8:113,120,399,309:-51.3133,-42.6585,-48.0771,-42.0289,-39.0939,-47.4477,-19.0496,-16.1151,-15.4834,-22.3614,-26.5459,-23.6117,-22.9807,0,-30.4589 1|1:28:7,1,0,9,11:7:271:1,0,9,11:39,0,346,426:-39.0318,-37.933,-59.8906,-41.139,-60.1916,-63.3976,-12.7372,-31.7894,-34.9954,-32.2862,-6.14228,-25.1954,-28.4015,0,-25.0902 dDocent_Contig_1549 7 . T C 6179.72 . AB=0.465217;ABP=7.84419;AC=3;AF=0.5;AN=6;AO=214;CIGAR=1X2M;DP=460;DPB=460;DPRA=0;EPP=467.705;EPPR=354.789;GTI=0;LEN=1;MEANALT=3.33333;MQM=60;MQMR=60;NS=3;NUMALT=3;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=8192;QR=6142;RO=162;RPL=0;RPP=467.705;RPPR=354.789;RPR=214;RUN=1;SAF=214;SAP=467.705;SAR=0;SRF=162;SRP=354.789;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|1:179:66,12,19,82:66:2523:12,19,82:459,732,3159:-239.522,-221.725,-425.136,-199.283,-368.641,-400.587,0,-169.358,-146.916,-182.339 0|1:117:31,2,28,55:31:1166:2,28,55:76,1058,2101:-163.054,-166.153,-261.083,-85.6682,-174.966,-172.771,0,-89.2992,-8.81255,-78.9757 0|1:164:65,6,16,77:65:2453:6,16,77:230,614,2932:-220.918,-221.607,-420.838,-190.086,-372.244,-386.306,0,-182.155,-150.633,-177.854 dDocent_Contig_1550 8 . T A 355.567 . AB=0.181818;ABP=109.412;AC=3;AF=0.5;AN=6;AO=22;CIGAR=1X;DP=121;DPB=121;DPRA=0;EPP=50.7827;EPPR=217.986;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=0.979798;PAO=0;PQA=0;PQR=0;PRO=0;QA=849;QR=3784;RO=99;RPL=0;RPP=50.7827;RPPR=217.986;RPR=22;RUN=1;SAF=22;SAP=50.7827;SAR=0;SRF=99;SRP=217.986;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:49:41,8:41:1571:8:312:-13.6945,0,-126.91 0/1:24:18,6:18:684:6:233:-14.1154,0,-54.6669 0/1:48:40,8:40:1529:8:304:-13.2698,0,-123.433 dDocent_Contig_1551 13 . T G 5915.24 . AB=0.788177;ABP=149.44;AC=4;AF=0.666667;AN=6;AO=185;CIGAR=1X;DP=230;DPB=230;DPRA=0;EPP=404.733;EPPR=100.727;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=7365;QR=1802;RO=45;RPL=0;RPP=404.733;RPPR=100.727;RPR=185;RUN=1;SAF=185;SAP=404.733;SAR=0;SRF=45;SRP=100.727;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:121:22,99:22:881:99:3969:-320.764,0,-43.1735 1/1:27:2,25:2:75:25:962:-79.7596,-1.00771,0 0/1:82:21,61:21:846:61:2434:-194.522,0,-51.768 dDocent_Contig_1552 8 . T A 1447.34 . AB=0.554348;ABP=5.3706;AC=3;AF=0.5;AN=6;AO=51;CIGAR=1X;DP=92;DPB=92;DPRA=0;EPP=113.755;EPPR=89.8692;GTI=0;LEN=1;MEANALT=1.33333;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=1967;QR=1541;RO=40;RPL=0;RPP=113.755;RPPR=89.8692;RPR=51;RUN=1;SAF=51;SAP=113.755;SAR=0;SRF=40;SRP=89.8692;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:51:25,25:25:970:25:967:-71.9024,0,-72.1722 0/1:18:9,9:9:348:9:350:-26.4428,0,-26.2617 0/1:23:6,17:6:223:17:650:-51.9114,0,-13.503 dDocent_Contig_1553 78 . G C 195.799 . AB=0.215385;ABP=48.7448;AC=3;AF=0.5;AN=6;AO=14;CIGAR=1X;DP=65;DPB=65;DPRA=0;EPP=33.4109;EPPR=113.755;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=481;QR=1788;RO=51;RPL=14;RPP=33.4109;RPPR=113.755;RPR=0;RUN=1;SAF=14;SAP=33.4109;SAR=0;SRF=51;SRP=113.755;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:29:21,8:21:728:8:269:-15.8075,0,-57.1125 0/1:17:15,2:15:542:2:72:-1.71913,0,-43.9977 0/1:19:15,4:15:518:4:140:-7.22536,0,-41.2288 dDocent_Contig_1554 7 . T C 1648.31 . AB=0.46875;ABP=4.09604;AC=3;AF=0.5;AN=6;AO=60;CIGAR=1X;DP=128;DPB=128;DPRA=0;EPP=133.299;EPPR=150.67;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=2310;QR=2609;RO=68;RPL=0;RPP=133.299;RPPR=150.67;RPR=60;RUN=1;SAF=60;SAP=133.299;SAR=0;SRF=68;SRP=150.67;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:67:33,34:33:1268:34:1301:-97.2077,0,-94.2436 0/1:21:14,7:14:536:7:273:-18.6164,0,-42.2632 0/1:40:21,19:21:805:19:736:-54.53,0,-60.7339 dDocent_Contig_1555 17 . T C 679.867 . AB=0.180905;ABP=179.009;AC=2;AF=0.333333;AN=6;AO=46;CIGAR=1X;DP=332;DPB=332;DPRA=0;EPP=102.898;EPPR=624.051;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=59.3776;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=0.996503;PAO=0;PQA=0;PQR=0;PRO=0;QA=1840;QR=11438;RO=286;RPL=0;RPP=102.898;RPPR=624.051;RPR=46;RUN=1;SAF=46;SAP=102.898;SAR=0;SRF=286;SRP=624.051;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:145:122,23:122:4889:23:933:-40.621,0,-396.05 0/1:54:41,13:41:1663:13:520:-30.8886,0,-133.543 0/0:133:123,10:123:4886:10:387:0,-4.85909,-404.217 dDocent_Contig_1556 36 . C G 180.012 . AB=0.120603;ABP=251.813;AC=3;AF=0.5;AN=6;AO=24;CIGAR=2X;DP=199;DPB=199;DPRA=0;EPP=55.1256;EPPR=383.018;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=1.38778e-17;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=915;QR=6930;RO=175;RPL=0;RPP=55.1256;RPPR=383.018;RPR=24;RUN=1;SAF=24;SAP=55.1256;SAR=0;SRF=175;SRP=383.018;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|1:96:83,13:83:3277:13:499:-16.3526,0,-266.108 0|1:50:45,5:45:1780:5:196:-2.96342,0,-145.378 0|1:53:47,6:47:1873:6:220:-4.19165,0,-152.821 dDocent_Contig_1557 23 . A G 2926.39 . AB=0.612903;ABP=16.7396;AC=4;AF=0.666667;AN=6;AO=95;CIGAR=1X;DP=144;DPB=144;DPRA=0;EPP=209.3;EPPR=109.412;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=3742;QR=1966;RO=49;RPL=0;RPP=209.3;RPPR=109.412;RPR=95;RUN=1;SAF=95;SAP=209.3;SAR=0;SRF=49;SRP=109.412;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:91:31,60:31:1240:60:2384:-187.32,0,-84.4789 1/1:20:1,19:1:41:19:723:-61.2899,-1.92603,0 0/1:33:17,16:17:685:16:635:-47.5525,0,-52.0463 dDocent_Contig_1558 107 . N G 564.304 . AB=0;ABP=0;AC=4;AF=1;AN=4;AO=19;CIGAR=1X;DP=19;DPB=19;DPRA=0;EPP=44.2683;EPPR=0;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=0;NS=2;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=618;QR=0;RO=0;RPL=0;RPP=44.2683;RPPR=0;RPR=19;RUN=1;SAF=0;SAP=44.2683;SAR=19;SRF=0;SRP=0;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 1/1:18:0,18:0:0:18:599:-54.2256,-5.41854,0 ./.:.:.:.:.:.:.:. 1/1:1:0,1:0:0:1:19:-1.89997,-0.30103,0 dDocent_Contig_1559 23 . G A 83.7688 . AB=0.162162;ABP=39.6906;AC=1;AF=0.166667;AN=6;AO=10;CIGAR=1X;DP=127;DPB=127;DPRA=0;EPP=24.725;EPPR=257.073;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=3.46945e-18;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=363;QR=4586;RO=117;RPL=0;RPP=24.725;RPPR=257.073;RPR=10;RUN=1;SAF=10;SAP=24.725;SAR=0;SRF=117;SRP=257.073;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:51:48,3:48:1873:3:93:0,-6.68268,-160.105 0/1:37:31,6:31:1220:6:233:-10.2008,0,-98.9337 0/0:39:38,1:38:1493:1:37:0,-8.04234,-130.921 dDocent_Contig_1560 24 . C T 111.669 . AB=0.510204;ABP=3.05462;AC=0;AF=0;AN=6;AO=25;CIGAR=2X;DP=60;DPB=60;DPRA=2.22727;EPP=57.2971;EPPR=61.6401;GTI=0;LEN=1;MEANALT=3;MQM=5;MQMR=60;NS=3;NUMALT=2;ODDS=0;PAIRED=0;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=992;QR=1075;RO=27;RPL=0;RPP=57.2971;RPPR=61.6401;RPR=25;RUN=1;SAF=25;SAP=57.2971;SAR=0;SRF=27;SRP=61.6401;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|0:33:9,20,2:9:356:20,2:792,76:-3.54836,-3.51023,-26.8365,0,-26.6242,-28.7904 0|0:11:11,0,0:11:435:0,0:0,0:0,-3.31133,-39.4998,-3.31133,-39.4998,-39.4998 0|0:16:7,5,4:7:284:5,4:200,159:-11.1373,-12.6929,-34.6145,0,-23.0324,-22.4247 dDocent_Contig_1561 19 . C T 102.975 . AB=0.227273;ABP=17.2236;AC=1;AF=0.166667;AN=6;AO=7;CIGAR=1X;DP=77;DPB=77;DPRA=2.25;EPP=18.2106;EPPR=155.013;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=286;QR=2823;RO=70;RPL=0;RPP=18.2106;RPPR=155.013;RPR=7;RUN=1;SAF=7;SAP=18.2106;SAR=0;SRF=70;SRP=155.013;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:41:39,2:39:1576:2:82:0,-4.56255,-134.291 0/0:14:14,0:14:562:0:0:0,-4.21442,-50.9228 0/1:22:17,5:17:685:5:204:-12.1214,0,-55.3563 dDocent_Contig_1562 9 . G A 363.461 . AB=0.131474;ABP=299.101;AC=2;AF=0.333333;AN=6;AO=34;CIGAR=1X;DP=284;DPB=284;DPRA=0;EPP=76.8404;EPPR=545.878;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=0.996;PAO=0;PQA=0;PQR=0;PRO=0;QA=1314;QR=9546;RO=250;RPL=0;RPP=76.8404;RPPR=545.878;RPR=34;RUN=1;SAF=34;SAP=76.8404;SAR=0;SRF=250;SRP=545.878;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:175:150,25:150:5734:25:965:-34.4837,0,-463.348 0/0:33:32,1:32:1208:1:39:0,-6.03743,-105.118 0/1:76:68,8:68:2604:8:310:-5.3853,0,-211.678 dDocent_Contig_1565 18 . T A 2102.55 . AB=0.020202;ABP=794.83;AC=0;AF=0;AN=6;AO=8;CIGAR=7M1X1M1X;DP=396;DPB=403;DPRA=0;EPP=20.3821;EPPR=574.108;GTI=0;LEN=1;MEANALT=3.66667;MQM=60;MQMR=60;NS=3;NUMALT=4;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=303;QR=10346;RO=263;RPL=0;RPP=20.3821;RPPR=574.108;RPR=8;RUN=1;SAF=8;SAP=20.3821;SAR=0;SRF=263;SRP=574.108;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|0:247:189,3,11,0,44:189:7417:3,11,0,44:122,431,0,1749:-87.0827,-133.914,-742.97,-108.539,-708.434,-715.186,-143.977,-743.873,-718.497,-753.936,0,-599.896,-574.521,-609.96,-596.715 0|0:54:28,3,1,2,20:28:1110:3,1,2,20:99,40,76,809:-58.3069,-58.743,-149.205,-63.4404,-146.813,-154.509,-60.504,-143.876,-148.578,-151.271,0,-83.404,-88.1038,-85.1669,-85.3786 0|0:95:46,2,10,11,26:46:1819:2,10,11,26:82,382,426,1024:-70.3885,-77.4669,-226.56,-52.9028,-195.828,-199.586,-49.244,-192.17,-167.604,-195.627,0,-142.929,-118.364,-114.706,-141.871 dDocent_Contig_1566 95 . A G 75.0866 . AB=0.333333;ABP=5.9056;AC=1;AF=0.166667;AN=6;AO=5;CIGAR=1X;DP=67;DPB=67;DPRA=3.22222;EPP=13.8677;EPPR=137.642;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=173;QR=2095;RO=62;RPL=5;RPP=13.8677;RPPR=137.642;RPR=0;RUN=1;SAF=5;SAP=13.8677;SAR=0;SRF=62;SRP=137.642;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:46:45,1:45:1522:1:33:0,-10.5482,-133.972 0/0:9:9,0:9:303:0:0:0,-2.70927,-27.5979 0/1:12:8,4:8:270:4:140:-9.33257,0,-21.017 dDocent_Contig_1567 109 . T A 533.565 . AB=0;ABP=0;AC=6;AF=1;AN=6;AO=17;CIGAR=1X;DP=18;DPB=18;DPRA=0;EPP=39.9253;EPPR=5.18177;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=584;QR=7;RO=1;RPL=0;RPP=39.9253;RPPR=5.18177;RPR=17;RUN=1;SAF=0;SAP=39.9253;SAR=17;SRF=0;SRP=5.18177;SRR=1;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 1/1:11:1,10:1:7:10:340:-30.2289,-2.61133,0 1/1:1:0,1:0:0:1:35:-3.49863,-0.30103,0 1/1:6:0,6:0:0:6:209:-19.1511,-1.80618,0 dDocent_Contig_1569 122 . A C 84.144 . AB=0.2;ABP=26.4622;AC=1;AF=0.166667;AN=6;AO=6;CIGAR=1X;DP=62;DPB=62;DPRA=1.875;EPP=16.0391;EPPR=124.613;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=207;QR=1756;RO=56;RPL=0;RPP=16.0391;RPPR=124.613;RPR=6;RUN=1;SAF=0;SAP=16.0391;SAR=6;SRF=0;SRP=124.613;SRR=56;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:30:24,6:24:744:6:207:-9.93728,0,-58.2224 0/0:13:13,0:13:397:0:0:0,-3.91339,-36.0265 0/0:19:19,0:19:615:0:0:0,-5.71957,-55.6593 dDocent_Contig_1570 8 . T A 2297.17 . AB=0.8;ABP=61.6401;AC=4;AF=0.666667;AN=6;AO=75;CIGAR=1X;DP=90;DPB=90;DPRA=0;EPP=165.871;EPPR=35.5824;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=3.46945e-18;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=2832;QR=584;RO=15;RPL=0;RPP=165.871;RPPR=35.5824;RPR=75;RUN=1;SAF=75;SAP=165.871;SAR=0;SRF=15;SRP=35.5824;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:43:8,35:8:311:35:1335:-107.492,0,-15.41 1/1:15:0,15:0:0:15:560:-50.7369,-4.51545,0 0/1:32:7,25:7:273:25:937:-75.0116,0,-15.3051 dDocent_Contig_1571 7 . T C 2902.51 . AB=0.373333;ABP=44.8184;AC=3;AF=0.5;AN=6;AO=112;CIGAR=1X;DP=300;DPB=300;DPRA=0;EPP=246.215;EPPR=409.076;GTI=0;LEN=1;MEANALT=1.33333;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=4279;QR=7118;RO=187;RPL=0;RPP=246.215;RPPR=409.076;RPR=112;RUN=1;SAF=112;SAP=246.215;SAR=0;SRF=187;SRP=409.076;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:179:118,60:118:4501:60:2310:-154.367,0,-351.41 0/1:34:19,15:19:715:15:571:-41.4961,0,-54.443 0/1:87:50,37:50:1902:37:1398:-99.9109,0,-145.237 dDocent_Contig_1572 116 . A G 4217.24 . AB=0.8;ABP=163.265;AC=3;AF=0.5;AN=6;AO=164;CIGAR=1X;DP=205;DPB=205;DPRA=0;EPP=359.132;EPPR=85.5263;GTI=0;LEN=1;MEANALT=1.66667;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=1.38778e-17;PAIRED=0.987805;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=5420;QR=1276;RO=38;RPL=0;RPP=359.132;RPPR=85.5263;RPR=164;RUN=1;SAF=0;SAP=359.132;SAR=164;SRF=0;SRP=85.5263;SRR=38;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:104:23,79:23:790:79:2594:-202.784,0,-40.4832 0/1:27:4,23:4:139:23:762:-60.7599,0,-4.72488 0/1:74:11,62:11:347:62:2064:-163.702,0,-9.21272 dDocent_Contig_1574 40 . C A 3495.12 . AB=0.881818;ABP=142.3;AC=4;AF=0.666667;AN=6;AO=107;CIGAR=1X;DP=121;DPB=121;DPRA=0;EPP=235.358;EPPR=31.2394;GTI=0;LEN=1;MEANALT=1.33333;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=4273;QR=516;RO=13;RPL=0;RPP=235.358;RPPR=31.2394;RPR=107;RUN=1;SAF=107;SAP=235.358;SAR=0;SRF=13;SRP=31.2394;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:67:6,61:6:232:61:2409:-196.791,0,-1.07664 1/1:11:0,10:0:0:10:407:-36.8718,-3.0103,0 0/1:43:7,36:7:284:36:1457:-118.431,0,-12.9891 dDocent_Contig_1576 42 . G A 39.4491 . AB=0.166667;ABP=20.3821;AC=1;AF=0.166667;AN=6;AO=4;CIGAR=1X;DP=83;DPB=83;DPRA=1.575;EPP=11.6962;EPPR=174.557;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=160;QR=3124;RO=79;RPL=0;RPP=11.6962;RPPR=174.557;RPR=4;RUN=1;SAF=4;SAP=11.6962;SAR=0;SRF=79;SRP=174.557;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:45:44,1:44:1718:1:40:0,-9.55067,-150.844 0/1:18:15,3:15:607:3:120:-5.76877,0,-49.549 0/0:20:20,0:20:799:0:0:0,-6.0206,-72.2282 dDocent_Contig_1577 9 . G C 6216.39 . AB=0.610465;ABP=39.4708;AC=3;AF=0.5;AN=6;AO=210;CIGAR=1X;DP=344;DPB=344;DPRA=0;EPP=459.02;EPPR=293.988;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=8113;QR=5159;RO=134;RPL=0;RPP=459.02;RPPR=293.988;RPR=210;RUN=1;SAF=210;SAP=459.02;SAR=0;SRF=134;SRP=293.988;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:215:66,149:66:2536:149:5744:-452.192,0,-163.717 0/1:31:17,14:17:648:14:543:-39.8841,0,-49.32 0/1:98:51,47:51:1975:47:1826:-135.086,0,-148.486 dDocent_Contig_1578 93 . A T 184.831 . AB=0.230769;ABP=35.7494;AC=2;AF=0.333333;AN=6;AO=13;CIGAR=1X;DP=79;DPB=79;DPRA=0;EPP=31.2394;EPPR=146.327;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=48.1364;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=0.742424;PAO=0;PQA=0;PQR=0;PRO=0;QA=446;QR=2324;RO=66;RPL=13;RPP=31.2394;RPPR=146.327;RPR=0;RUN=1;SAF=13;SAP=31.2394;SAR=0;SRF=66;SRP=146.327;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:27:26,1:26:915:1:35:0,-4.62918,-67.5973 0/1:18:11,7:11:381:7:244:-16.8815,0,-26.1004 0/1:34:29,5:29:1028:5:167:-5.12432,0,-64.127 dDocent_Contig_1579 98 . N G 135.972 . AB=0;ABP=0;AC=4;AF=1;AN=4;AO=4;CIGAR=1X;DP=4;DPB=4;DPRA=0;EPP=11.6962;EPPR=0;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=0;NS=2;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=140;QR=0;RO=0;RPL=4;RPP=11.6962;RPPR=0;RPR=0;RUN=1;SAF=4;SAP=11.6962;SAR=0;SRF=0;SRP=0;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 1/1:1:0,1:0:0:1:35:-3.49863,-0.30103,0 1/1:3:0,3:0:0:3:105:-9.79616,-0.90309,0 ./.:.:.:.:.:.:.:. dDocent_Contig_1580 7 . T C 563.254 . AB=0.184783;ABP=161.811;AC=3;AF=0.5;AN=6;AO=34;CIGAR=1X;DP=184;DPB=184;DPRA=0;EPP=76.8404;EPPR=328.731;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=0.986667;PAO=0;PQA=0;PQR=0;PRO=0;QA=1291;QR=5753;RO=150;RPL=0;RPP=76.8404;RPPR=328.731;RPR=34;RUN=1;SAF=34;SAP=76.8404;SAR=0;SRF=150;SRP=328.731;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:102:90,12:90:3432:12:463:-11.3158,0,-278.314 0/1:25:19,6:19:738:6:234:-13.9054,0,-59.2254 0/1:57:41,16:41:1583:16:594:-36.6271,0,-125.579 dDocent_Contig_1582 86 . G C 108.689 . AB=0.115207;ABP=282.09;AC=1;AF=0.166667;AN=6;AO=32;CIGAR=1X;DP=347;DPB=347;DPRA=7.7619;EPP=72.4974;EPPR=687.024;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=1093;QR=10771;RO=315;RPL=32;RPP=72.4974;RPPR=687.024;RPR=0;RUN=1;SAF=32;SAP=72.4974;SAR=0;SRF=315;SRP=687.024;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:217:192,25:192:6535:25:860:-12.3918,0,-522.954 0/0:21:21,0:21:720:0:0:0,-6.32163,-65.1199 0/0:109:102,7:102:3516:7:233:0,-11.5165,-295.372 dDocent_Contig_1583 43 . G A 1798.58 . AB=0.268817;ABP=132.528;AC=3;AF=0.5;AN=6;AO=75;CIGAR=1X2M1X;DP=279;DPB=279;DPRA=0;EPP=165.871;EPPR=443.819;GTI=0;LEN=1;MEANALT=1.33333;MQM=60;MQMR=59.2118;NS=3;NUMALT=1;ODDS=1.38778e-17;PAIRED=1;PAIREDR=0.91133;PAO=0;PQA=0;PQR=0;PRO=0;QA=2980;QR=7807;RO=203;RPL=0;RPP=165.871;RPPR=443.819;RPR=75;RUN=1;SAF=75;SAP=165.871;SAR=0;SRF=203;SRP=443.819;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|1:155:109,45:109:4201:45:1785:-114.478,0,-331.527 0|1:35:23,12:23:893:12:478:-32.8364,0,-70.1499 0|1:89:71,18:71:2713:18:717:-38.0666,0,-217.234 dDocent_Contig_1585 7 . C T 55324.1 . AB=0;ABP=0;AC=0;AF=0;AN=6;AO=133;CIGAR=2X2M1X;DP=2053;DPB=2053;DPRA=0;EPP=291.816;EPPR=204.957;GTI=0;LEN=1;MEANALT=9.66667;MQM=60;MQMR=60;NS=3;NUMALT=2;ODDS=0;PAIRED=0.992481;PAIREDR=0.978495;PAO=0;PQA=0;PQR=0;PRO=0;QA=5121;QR=3569;RO=93;RPL=0;RPP=291.816;RPPR=204.957;RPR=133;RUN=1;SAF=133;SAP=291.816;SAR=0;SRF=93;SRP=204.957;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|0:1222:60,997,84:60:2295:997,84:38542,3239:-3259.34,-111.805,0,-3011.42,-34.1403,-3174.46 0|0:216:7,178,15:7:270:178,15:6798,577:-587.035,-31.4084,0,-541.769,-6.20505,-559.427 0|0:615:26,510,34:26:1004:510,34:19749,1305:-1685.56,-71.0677,0,-1586.27,-46.4046,-1658.49 dDocent_Contig_1586 28 . T C 114.025 . AB=0.189189;ABP=34.0565;AC=2;AF=0.333333;AN=6;AO=7;CIGAR=1X;DP=42;DPB=42;DPRA=3.7;EPP=18.2106;EPPR=79.0118;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=3.46945e-18;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=281;QR=1385;RO=35;RPL=0;RPP=18.2106;RPPR=79.0118;RPR=7;RUN=1;SAF=7;SAP=18.2106;SAR=0;SRF=35;SRP=79.0118;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:25:21,4:21:818:4:158:-7.07291,0,-66.4025 0/1:12:9,3:9:364:3:123:-7.85243,0,-29.5126 0/0:5:5,0:5:203:0:0:0,-1.50515,-18.6531 dDocent_Contig_1587 22 . C T 755.805 . AB=0.236842;ABP=94.4407;AC=3;AF=0.5;AN=6;AO=36;CIGAR=1X;DP=152;DPB=152;DPRA=0;EPP=81.1833;EPPR=252.73;GTI=0;LEN=1;MEANALT=1.33333;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=6.93889e-18;PAIRED=0.972222;PAIREDR=0.991304;PAO=0;PQA=0;PQR=0;PRO=0;QA=1399;QR=4608;RO=115;RPL=0;RPP=81.1833;RPPR=252.73;RPR=36;RUN=1;SAF=36;SAP=81.1833;SAR=0;SRF=115;SRP=252.73;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:83:66,16:66:2664:16:621:-31.1411,0,-214.791 0/1:14:9,5:9:358:5:202:-14.3471,0,-28.3686 0/1:55:40,15:40:1586:15:576:-35.6152,0,-126.423 dDocent_Contig_1588 13 . T C 1644.79 . AB=0.125322;ABP=1423.56;AC=3;AF=0.5;AN=6;AO=146;CIGAR=1X;DP=1165;DPB=1165;DPRA=0;EPP=320.045;EPPR=2189.68;GTI=0;LEN=1;MEANALT=1.66667;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=5747;QR=37889;RO=1007;RPL=0;RPP=320.045;RPPR=2189.68;RPR=146;RUN=1;SAF=146;SAP=320.045;SAR=0;SRF=1007;SRP=2189.68;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:694:602,86:602:22630:86:3373:-96.1488,0,-1828 0/1:119:96,23:96:3574:23:895:-45.0227,0,-285.977 0/1:352:309,37:309:11685:37:1479:-28.8308,0,-946.666 dDocent_Contig_1589 12 . G A 2015.25 . AB=0.268058;ABP=294.124;AC=3;AF=0.5;AN=6;AO=167;CIGAR=1X;DP=623;DPB=623;DPRA=0;EPP=365.646;EPPR=984.516;GTI=0;LEN=1;MEANALT=1.33333;MQM=27.5269;MQMR=50.0996;NS=3;NUMALT=1;ODDS=0;PAIRED=0.335329;PAIREDR=0.0818584;PAO=0;PQA=0;PQR=0;PRO=0;QA=6688;QR=18104;RO=452;RPL=0;RPP=365.646;RPPR=984.516;RPR=167;RUN=1;SAF=167;SAP=365.646;SAR=0;SRF=452;SRP=984.516;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:362:244,118:244:9816:118:4711:-155.446,0,-728.456 0/1:84:71,13:71:2806:13:525:-4.64057,0,-215.911 0/1:177:137,36:137:5482:36:1452:-46.9609,0,-385.11 dDocent_Contig_1591 14 . G C 839.061 . AB=0.0566038;ABP=93.5156;AC=0;AF=0;AN=6;AO=3;CIGAR=1X2M1X;DP=73;DPB=73;DPRA=0;EPP=9.52472;EPPR=87.6977;GTI=0;LEN=1;MEANALT=2;MQM=60;MQMR=60;NS=3;NUMALT=2;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=103;QR=1538;RO=39;RPL=0;RPP=9.52472;RPPR=87.6977;RPR=3;RUN=1;SAF=3;SAP=9.52472;SAR=0;SRF=39;SRP=87.6977;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|0:36:18,2,16:18:714:2,16:62,624:-45.9363,-46.3907,-104.564,0,-53.8855,-54.0333 0|0:20:13,0,7:13:502:0,7:0,280:-19.5501,-23.4634,-64.6776,0,-41.6089,-39.5017 0|0:17:8,1,8:8:322:1,8:41,320:-23.9426,-22.9657,-49.2034,0,-23.146,-24.1227 dDocent_Contig_1592 1 . N G 74.9833 . AB=0;ABP=0;AC=2;AF=1;AN=2;AO=2;CIGAR=1X;DP=2;DPB=2;DPRA=0;EPP=7.35324;EPPR=0;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=0;NS=1;NUMALT=1;ODDS=5.99146;PAIRED=1;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=79;QR=0;RO=0;RPL=0;RPP=7.35324;RPPR=0;RPR=2;RUN=1;SAF=2;SAP=7.35324;SAR=0;SRF=0;SRP=0;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL ./.:.:.:.:.:.:.:. ./.:.:.:.:.:.:.:. 1/1:2:0,2:0:0:2:79:-7.49724,-0.60206,0 dDocent_Contig_1594 7 . T A 153.602 . AB=0.172414;ABP=57.0725;AC=1;AF=0.166667;AN=6;AO=13;CIGAR=1X;DP=208;DPB=208;DPRA=4.02174;EPP=31.2394;EPPR=426.447;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=496;QR=7483;RO=195;RPL=0;RPP=31.2394;RPPR=426.447;RPR=13;RUN=1;SAF=13;SAP=31.2394;SAR=0;SRF=195;SRP=426.447;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:127:124,3:124:4768:3:115:0,-27.5059,-418.428 0/0:23:23,0:23:875:0:0:0,-6.92369,-79.0704 0/1:58:48,10:48:1840:10:381:-17.1841,0,-148.391 dDocent_Contig_1595 21 . T A 5547.28 . AB=0.778761;ABP=155.551;AC=3;AF=0.5;AN=6;AO=176;CIGAR=1X;DP=226;DPB=226;DPRA=0;EPP=385.189;EPPR=109.412;GTI=0;LEN=1;MEANALT=1.33333;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=6974;QR=1956;RO=49;RPL=0;RPP=385.189;RPPR=109.412;RPR=176;RUN=1;SAF=176;SAP=385.189;SAR=0;SRF=49;SRP=109.412;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:92:27,65:27:1077:65:2584:-205.005,0,-69.5274 0/1:79:15,63:15:600:63:2483:-199.965,0,-30.665 0/1:55:7,48:7:279:48:1907:-155.281,0,-8.9247 dDocent_Contig_1596 75 . G T 441.625 . AB=0.259259;ABP=43.7857;AC=2;AF=0.333333;AN=6;AO=22;CIGAR=1X;DP=107;DPB=107;DPRA=0;EPP=50.7827;EPPR=187.585;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=831;QR=3229;RO=85;RPL=22;RPP=50.7827;RPPR=187.585;RPR=0;RUN=1;SAF=22;SAP=50.7827;SAR=0;SRF=85;SRP=187.585;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:50:34,16:34:1304:16:604:-39.642,0,-102.59 0/0:26:25,1:25:927:1:38:0,-4.02951,-79.9331 0/1:31:26,5:26:998:5:189:-8.04341,0,-80.7999 dDocent_Contig_1597 193 . C T 83.3049 . AB=0.137255;ABP=61.2994;AC=1;AF=0.166667;AN=6;AO=7;CIGAR=1X;DP=73;DPB=73;DPRA=4.63636;EPP=18.2106;EPPR=146.327;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=276;QR=2621;RO=66;RPL=7;RPP=18.2106;RPPR=146.327;RPR=0;RUN=1;SAF=0;SAP=18.2106;SAR=7;SRF=0;SRP=146.327;SRR=66;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:51:44,7:44:1766:7:276:-9.85336,0,-143.801 0/0:7:7,0:7:275:0:0:0,-2.10721,-25.1174 0/0:15:15,0:15:580:0:0:0,-4.51545,-52.5278 dDocent_Contig_1598 24 . G C 580.418 . AB=0.415094;ABP=6.32897;AC=3;AF=0.5;AN=6;AO=22;CIGAR=1X;DP=53;DPB=53;DPRA=0;EPP=50.7827;EPPR=68.1545;GTI=0;LEN=1;MEANALT=1.33333;MQM=59.8636;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=0;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=870;QR=1192;RO=30;RPL=0;RPP=50.7827;RPPR=68.1545;RPR=22;RUN=1;SAF=22;SAP=50.7827;SAR=0;SRF=30;SRP=68.1545;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:29:15,14:15:589:14:545:-40.6537,0,-44.6122 0/1:7:5,1:5:196:1:41:-1.88352,0,-15.8086 0/1:17:10,7:10:407:7:284:-20.8124,0,-31.8731 dDocent_Contig_1599 92 . G T 160.948 . AB=0.215686;ABP=38.8183;AC=2;AF=0.333333;AN=6;AO=12;CIGAR=2X;DP=82;DPB=82;DPRA=0;EPP=29.068;EPPR=155.013;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=416;QR=2329;RO=70;RPL=12;RPP=29.068;RPPR=155.013;RPR=0;RUN=1;SAF=12;SAP=29.068;SAR=0;SRF=70;SRP=155.013;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|1:34:28,6:28:934:6:207:-8.73322,0,-74.1343 0|0:31:30,1:30:1008:1:35:0,-5.8333,-87.529 0|1:17:12,5:12:387:5:174:-10.8844,0,-30.0248 dDocent_Contig_1600 141 . C G 3932.27 . AB=0.8125;ABP=152.299;AC=3;AF=0.5;AN=6;AO=143;CIGAR=1X;DP=176;DPB=176;DPRA=0;EPP=313.531;EPPR=72.4974;GTI=0;LEN=1;MEANALT=1.33333;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=5010;QR=1100;RO=32;RPL=0;RPP=313.531;RPPR=72.4974;RPR=143;RUN=1;SAF=0;SAP=313.531;SAR=143;SRF=0;SRP=72.4974;SRR=32;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:85:9,75:9:311:75:2643:-212.486,0,-2.69823 0/1:27:6,21:6:207:21:720:-56.9865,0,-10.8403 0/1:64:17,47:17:582:47:1647:-129.249,0,-33.4379 dDocent_Contig_1601 17 . G A 103.919 . AB=0.2;ABP=26.4622;AC=1;AF=0.166667;AN=6;AO=9;CIGAR=1X;DP=80;DPB=80;DPRA=0;EPP=22.5536;EPPR=157.185;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=353;QR=2851;RO=71;RPL=0;RPP=22.5536;RPPR=157.185;RPR=9;RUN=1;SAF=9;SAP=22.5536;SAR=0;SRF=71;SRP=157.185;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:28:26,2:26:1042:2:80:0,-0.837265,-86.4769 0/0:22:21,1:21:854:1:41:0,-2.52809,-73.0753 0/1:30:24,6:24:955:6:232:-12.2156,0,-77.2205 dDocent_Contig_1602 18 . A C 1065.29 . AB=0.14433;ABP=109.592;AC=3;AF=0.5;AN=6;AO=14;CIGAR=1X1M;DP=97;DPB=97;DPRA=0;EPP=33.4109;EPPR=100.727;GTI=0;LEN=1;MEANALT=2;MQM=60;MQMR=60;NS=3;NUMALT=2;ODDS=1.38778e-17;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=554;QR=1763;RO=45;RPL=0;RPP=33.4109;RPPR=100.727;RPR=14;RUN=1;SAF=14;SAP=33.4109;SAR=0;SRF=45;SRP=100.727;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|1:22:8,12,2:8:325:12,2:486,79:-37.6746,0,-23.202,-33.5833,-20.3156,-59.7872 0|1:54:24,20,10:24:936:20,10:792,401:-57.9567,0,-70.9021,-32.1411,-43.8808,-106.058 0|1:21:13,6,2:13:502:6,2:246,74:-16.4209,0,-39.4276,-14.2902,-35.1819,-54.8918 dDocent_Contig_1603 34 . C A 6645.42 . AB=0.842742;ABP=256.057;AC=3;AF=0.5;AN=6;AO=209;CIGAR=2X;DP=248;DPB=248;DPRA=0;EPP=456.848;EPPR=85.5263;GTI=0;LEN=1;MEANALT=1.33333;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=0.631579;PAIREDR=0.921053;PAO=0;PQA=0;PQR=0;PRO=0;QA=8272;QR=1525;RO=38;RPL=0;RPP=456.848;RPPR=85.5263;RPR=209;RUN=1;SAF=209;SAP=456.848;SAR=0;SRF=38;SRP=85.5263;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|1:165:24,141:24:960:141:5597:-453.894,0,-37.0291 0|1:30:5,24:5:198:24:920:-73.9607,0,-9.067 0|1:53:9,44:9:367:44:1755:-142.21,0,-17.4407 dDocent_Contig_1604 98 . N T 196.207 . AB=0;ABP=0;AC=4;AF=1;AN=4;AO=8;CIGAR=1X;DP=8;DPB=8;DPRA=0;EPP=20.3821;EPPR=0;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=0;NS=2;NUMALT=1;ODDS=0;PAIRED=0.375;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=209;QR=0;RO=0;RPL=8;RPP=20.3821;RPPR=0;RPR=0;RUN=1;SAF=8;SAP=20.3821;SAR=0;SRF=0;SRP=0;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 1/1:6:0,6:0:0:6:160:-14.6645,-1.80618,0 ./.:.:.:.:.:.:.:. 1/1:2:0,2:0:0:2:49:-4.65463,-0.60206,0 dDocent_Contig_1605 11 . T G 191.796 . AB=0.192982;ABP=49.6779;AC=1;AF=0.166667;AN=6;AO=37;CIGAR=1X1M;DP=719;DPB=719;DPRA=0;EPP=83.3548;EPPR=1447.04;GTI=0;LEN=1;MEANALT=2.33333;MQM=43.5405;MQMR=59.9895;NS=3;NUMALT=2;ODDS=0;PAIRED=0;PAIREDR=0.998496;PAO=0;PQA=0;PQR=0;PRO=0;QA=1464;QR=26697;RO=665;RPL=0;RPP=83.3548;RPPR=1447.04;RPR=37;RUN=1;SAF=37;SAP=83.3548;SAR=0;SRF=665;SRP=1447.04;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|0:534:503,11,18:503:20195:11,18:444,707:0,-124.213,-1784.93,-99.7605,-1736.6,-1758.41 0|1:57:42,4,11:42:1688:4,11:150,433:-21.0035,-23.5231,-161.44,0,-129.046,-135.866 0|0:128:120,0,8:120:4814:0,8:0,324:0,-36.1236,-432.761,-9.97978,-407.009,-404.6 dDocent_Contig_1606 29 . A G 235.138 . AB=0.193548;ABP=53.5846;AC=1;AF=0.166667;AN=6;AO=13;CIGAR=1X;DP=192;DPB=192;DPRA=0.349558;EPP=31.2394;EPPR=391.704;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=525;QR=7162;RO=179;RPL=0;RPP=31.2394;RPPR=391.704;RPR=13;RUN=1;SAF=13;SAP=31.2394;SAR=0;SRF=179;SRP=391.704;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:113:113,0:113:4525:0:0:0,-34.0164,-407.179 0/0:17:16,1:16:638:1:40:0,-1.12183,-53.7553 0/1:62:50,12:50:1999:12:485:-25.3376,0,-161.439 dDocent_Contig_1607 41 . C T 2541.8 . AB=0.121212;ABP=85.263;AC=3;AF=0.5;AN=6;AO=8;CIGAR=1X2M;DP=164;DPB=164;DPRA=0;EPP=20.3821;EPPR=146.327;GTI=0;LEN=1;MEANALT=3;MQM=60;MQMR=60;NS=3;NUMALT=3;ODDS=1.38778e-17;PAIRED=1;PAIREDR=0.909091;PAO=0;PQA=0;PQR=0;PRO=0;QA=322;QR=2545;RO=66;RPL=0;RPP=20.3821;RPPR=146.327;RPR=8;RUN=1;SAF=8;SAP=20.3821;SAR=0;SRF=66;SRP=146.327;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|1:98:39,59,0,0:39:1505:59,0,0:2361,0,0:-183.152,0,-106.193,-194.892,-123.954,-318.455,-194.892,-123.954,-318.455,-318.455 0|1:24:10,9,4,0:10:380:9,4,0:355,162,0:-26.1888,0,-28.4261,-15.8382,-17.7711,-45.7787,-29.1991,-31.1353,-46.9828,-60.3439 0|1:42:17,17,4,4:17:660:17,4,4:674,160,156:-50.3616,0,-49.0923,-42.2991,-41.0287,-95.3062,-42.6584,-41.3881,-83.6888,-95.6647 dDocent_Contig_1608 120 . T C 6973.41 . AB=0.316294;ABP=94.7602;AC=3;AF=0.5;AN=6;AO=99;CIGAR=2X2M9X;DP=313;DPB=380.538;DPRA=0;EPP=33.038;EPPR=0;GTI=0;LEN=1;MEANALT=9.66667;MQM=55.7576;MQMR=0;NS=3;NUMALT=5;ODDS=0;PAIRED=0.20202;PAIREDR=0;PAO=73.1667;PQA=2660.83;PQR=5989.75;PRO=178.75;QA=3764;QR=0;RO=0;RPL=68;RPP=33.038;RPPR=0;RPR=31;RUN=1;SAF=0;SAP=217.986;SAR=99;SRF=0;SRP=0;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|1:109:0,12,47,3,0,27:0:0:12,47,3,0,27:472,1743,114,0,1025:-224.202,-185.431,-181.818,-83.4803,-44.7091,-69.3319,-214.853,-176.082,-74.1318,-213.95,-224.202,-185.431,-83.4803,-214.853,-224.202,-140.72,-101.949,0,-131.372,-140.72,-132.592 0|1:99:0,4,44,6,6,35:0:0:4,44,6,6,35:154,1594,237,218,1311:-227.858,-215.213,-214.009,-102.972,-90.3268,-89.7269,-208.354,-195.708,-83.4668,-206.547,-210.199,-197.554,-85.3126,-190.694,-208.392,-124.886,-112.24,0,-105.38,-107.226,-114.35 0|1:105:0,2,44,7,0,37:0:0:2,44,7,0,37:72,1636,254,0,1428:-250.803,-244.929,-244.327,-116.908,-111.034,-103.663,-230.072,-224.197,-96.1767,-227.964,-250.803,-244.929,-116.908,-230.072,-250.803,-133.896,-128.022,0,-113.165,-133.896,-122.758 dDocent_Contig_1609 107 . N T 139.346 . AB=0;ABP=0;AC=4;AF=1;AN=4;AO=5;CIGAR=1X;DP=5;DPB=5;DPRA=0;EPP=13.8677;EPPR=0;GTI=0;LEN=1;MEANALT=1;MQM=34;MQMR=0;NS=2;NUMALT=1;ODDS=0;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=156;QR=0;RO=0;RPL=0;RPP=13.8677;RPPR=0;RPR=5;RUN=1;SAF=0;SAP=13.8677;SAR=5;SRF=0;SRP=0;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL ./.:.:.:.:.:.:.:. 1/1:3:0,3:0:0:3:99:-8.46827,-0.90309,0 1/1:2:0,2:0:0:2:57:-5.1645,-0.60206,0 dDocent_Contig_1610 110 . T C 2694.54 . AB=0.813084;ABP=94.1107;AC=4;AF=0.666667;AN=6;AO=101;CIGAR=1X;DP=121;DPB=121;DPRA=0;EPP=222.329;EPPR=46.4397;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=3381;QR=688;RO=20;RPL=0;RPP=222.329;RPPR=46.4397;RPR=101;RUN=1;SAF=0;SAP=222.329;SAR=101;SRF=0;SRP=46.4397;SRR=20;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:64:12,52:12:415:52:1754:-138.876,0,-18.4161 1/1:14:0,14:0:0:14:468:-42.4392,-4.21442,0 0/1:43:8,35:8:273:35:1159:-91.6614,0,-11.9585 dDocent_Contig_1611 98 . N A 9558.91 . AB=0;ABP=0;AC=6;AF=1;AN=6;AO=338;CIGAR=1X;DP=338;DPB=338;DPRA=0;EPP=736.968;EPPR=0;GTI=0;LEN=1;MEANALT=1;MQM=59.0947;MQMR=0;NS=3;NUMALT=1;ODDS=0;PAIRED=0.973373;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=10679;QR=0;RO=0;RPL=338;RPP=736.968;RPPR=0;RPR=0;RUN=1;SAF=338;SAP=736.968;SAR=0;SRF=0;SRP=0;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 1/1:161:0,161:0:0:161:5047:-454.385,-48.4658,0 1/1:61:0,61:0:0:61:1918:-169.791,-18.3628,0 1/1:116:0,116:0:0:116:3714:-331.238,-34.9195,0 dDocent_Contig_1613 14 . T A 55.4293 . AB=0.230769;ABP=11.1951;AC=1;AF=0.166667;AN=6;AO=7;CIGAR=1X;DP=124;DPB=124;DPRA=0;EPP=18.2106;EPPR=257.073;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=0;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=281;QR=4739;RO=117;RPL=0;RPP=18.2106;RPPR=257.073;RPR=7;RUN=1;SAF=7;SAP=18.2106;SAR=0;SRF=117;SRP=257.073;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:92:89,3:89:3613:3:120:0,-16.5071,-313.983 0/1:13:10,3:10:405:3:121:-7.36681,0,-32.8967 0/0:19:18,1:18:721:1:40:0,-1.72389,-61.2154 dDocent_Contig_1615 31 . C T 1480.17 . AB=0.472727;ABP=3.72096;AC=3;AF=0.5;AN=6;AO=52;CIGAR=1X;DP=110;DPB=110;DPRA=0;EPP=115.927;EPPR=128.956;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=2063;QR=2328;RO=58;RPL=0;RPP=115.927;RPPR=128.956;RPR=52;RUN=1;SAF=52;SAP=115.927;SAR=0;SRF=58;SRP=128.956;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:58:32,26:32:1287:26:1033:-75.805,0,-98.6311 0/1:19:8,11:8:324:11:430:-33.3312,0,-23.8096 0/1:33:18,15:18:717:15:600:-44.4036,0,-54.9216 dDocent_Contig_1616 107 . N C 92.3045 . AB=0;ABP=0;AC=2;AF=1;AN=2;AO=3;CIGAR=1X;DP=3;DPB=3;DPRA=0;EPP=9.52472;EPPR=0;GTI=0;LEN=1;MEANALT=1;MQM=54;MQMR=0;NS=1;NUMALT=1;ODDS=6.68461;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=99;QR=0;RO=0;RPL=0;RPP=9.52472;RPPR=0;RPR=3;RUN=1;SAF=0;SAP=9.52472;SAR=3;SRF=0;SRP=0;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL ./.:.:.:.:.:.:.:. 1/1:3:0,3:0:0:3:99:-9.22991,-0.90309,0 ./.:.:.:.:.:.:.:. dDocent_Contig_1618 32 . A T 1608.48 . AB=0.417266;ABP=11.2744;AC=3;AF=0.5;AN=6;AO=58;CIGAR=1X;DP=139;DPB=139;DPRA=0;EPP=128.956;EPPR=178.9;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=6.93889e-18;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=2303;QR=3203;RO=81;RPL=0;RPP=128.956;RPPR=178.9;RPR=58;RUN=1;SAF=58;SAP=128.956;SAR=0;SRF=81;SRP=178.9;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:57:40,17:40:1600:17:672:-43.6533,0,-127.077 0/1:12:6,6:6:237:6:227:-17.176,0,-18.0908 0/1:70:35,35:35:1366:35:1404:-105.541,0,-102.121 dDocent_Contig_1619 17 . A G 5346.3 . AB=0.814286;ABP=123.124;AC=4;AF=0.666667;AN=6;AO=166;CIGAR=1X;DP=193;DPB=193;DPRA=0;EPP=363.475;EPPR=61.6401;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=6487;QR=1053;RO=27;RPL=0;RPP=363.475;RPPR=61.6401;RPR=166;RUN=1;SAF=166;SAP=363.475;SAR=0;SRF=27;SRP=61.6401;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:119:18,101:18:703:101:3931:-317.997,0,-27.7731 0/1:21:8,13:8:309:13:513:-40.1924,0,-21.8446 1/1:53:1,52:1:41:52:2043:-179.964,-11.86,0 dDocent_Contig_1620 113 . A T 640.285 . AB=0.277311;ABP=54.268;AC=2;AF=0.333333;AN=6;AO=36;CIGAR=1X;DP=152;DPB=152;DPRA=0;EPP=81.1833;EPPR=252.73;GTI=0;LEN=1;MEANALT=1.33333;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=1245;QR=3954;RO=115;RPL=0;RPP=81.1833;RPPR=252.73;RPR=36;RUN=1;SAF=0;SAP=81.1833;SAR=36;SRF=0;SRP=252.73;SRR=115;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:104:73,30:73:2516:30:1035:-62.2695,0,-195.492 0/1:15:12,3:12:421:3:105:-5.28071,0,-33.7084 0/0:33:30,3:30:1017:3:105:0,-0.137828,-82.0343 dDocent_Contig_1621 8 . A G 5797.47 . AB=0.0192878;ABP=1355.84;AC=1;AF=0.166667;AN=6;AO=13;CIGAR=3X3M;DP=674;DPB=673.833;DPRA=0;EPP=31.2394;EPPR=246.215;GTI=0;LEN=1;MEANALT=21.6667;MQM=60;MQMR=60;NS=3;NUMALT=7;ODDS=2.22045e-16;PAIRED=1;PAIREDR=0.830357;PAO=0;PQA=0;PQR=0;PRO=0;QA=479;QR=4313;RO=112;RPL=0;RPP=31.2394;RPPR=246.215;RPR=13;RUN=1;SAF=13;SAP=31.2394;SAR=0;SRF=112;SRP=246.215;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|0:288:51,16,11,11,29,1,27,96:51:1957:16,11,11,29,1,27,96:612,400,229,1111,38,807,3707:-289.133,-276.739,-432.558,-271.818,-404.709,-429.144,-290.154,-423.043,-418.123,-447.478,-213.305,-346.197,-341.277,-359.612,-365.214,-301.368,-434.258,-429.339,-447.673,-370.827,-461.704,-244.852,-377.742,-372.822,-391.156,-314.31,-402.371,-397.36,0,-132.904,-127.981,-146.319,-69.4647,-157.532,-101.016,-131.75 0|0:199:21,4,10,24,10,10,25,56:21:812:4,10,24,10,10,25,56:152,368,641,376,367,850,2128:-168.214,-167.953,-233.451,-144.448,-204.568,-208.141,-129.276,-189.395,-165.892,-188.753,-143.728,-203.848,-180.344,-165.172,-207.421,-144.535,-204.655,-181.151,-165.978,-180.431,-208.228,-109.314,-169.434,-145.93,-130.759,-145.21,-146.017,-168.491,0,-60.125,-36.6191,-21.4503,-35.8989,-36.706,-1.48406,-49.8504 1|0:187:40,12,6,6,41,2,21,44:40:1544:12,6,6,41,2,21,44:460,228,170,1581,74,689,1671:-127.918,-116.85,-240.038,-121.26,-224.952,-246.257,-127.76,-231.45,-235.862,-252.755,-10.2322,-113.93,-118.341,-124.84,-124.698,-133.905,-237.596,-242.009,-248.507,-130.986,-260.105,-87.7196,-191.411,-195.822,-202.321,-84.8002,-208.467,-208.199,-2.91952,-106.618,-111.028,-117.528,0,-123.673,-77.4879,-116.482 dDocent_Contig_1622 7 . T A 286.75 . AB=0.0984848;ABP=187.849;AC=1;AF=0.166667;AN=6;AO=39;CIGAR=1X1M1X;DP=511;DPB=511;DPRA=0;EPP=87.6977;EPPR=958.458;GTI=0;LEN=1;MEANALT=2;MQM=60;MQMR=60;NS=3;NUMALT=2;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=1474;QR=16759;RO=440;RPL=0;RPP=87.6977;RPPR=958.458;RPR=39;RUN=1;SAF=39;SAP=87.6977;SAR=0;SRF=440;SRP=958.458;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|0:379:339,26,14:339:12926:26,14:980,538:0,-21.7463,-1074.31,-57.8807,-1037.97,-1114.07 0|0:26:15,2,9:15:579:2,9:74,343:-23.6304,-22.0942,-69.0471,0,-41.5142,-44.8566 0|1:106:86,11,9:86:3254:11,9:420,349:-8.56747,0,-263.434,-5.77934,-238.07,-269.821 dDocent_Contig_1623 11 . A C 2462.01 . AB=0.340659;ABP=63.215;AC=3;AF=0.5;AN=6;AO=93;CIGAR=2X;DP=273;DPB=273;DPRA=0;EPP=204.957;EPPR=393.875;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=59.9278;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=3701;QR=7059;RO=180;RPL=0;RPP=204.957;RPPR=393.875;RPR=93;RUN=1;SAF=93;SAP=204.957;SAR=0;SRF=180;SRP=393.875;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|1:168:116,52:116:4562:52:2070:-135.914,0,-359.905 0|1:35:22,13:22:855:13:509:-35.6194,0,-66.7255 0|1:70:42,28:42:1642:28:1122:-80.1912,0,-126.947 dDocent_Contig_1624 45 . C T 7358.59 . AB=0.721068;ABP=146.063;AC=3;AF=0.5;AN=6;AO=243;CIGAR=1X;DP=337;DPB=337;DPRA=0;EPP=530.678;EPPR=204.957;GTI=0;LEN=1;MEANALT=1.33333;MQM=59.9342;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=0.946237;PAO=0;PQA=0;PQR=0;PRO=0;QA=9362;QR=3571;RO=93;RPL=0;RPP=530.678;RPPR=204.957;RPR=243;RUN=1;SAF=243;SAP=530.678;SAR=0;SRF=93;SRP=204.957;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:201:52,149:52:1966:149:5765:-458.224,0,-116.627 0/1:40:10,29:10:383:29:1115:-88.4934,0,-22.6832 0/1:96:31,65:31:1222:65:2482:-194.664,0,-81.3598 dDocent_Contig_1625 20 . A T 424.197 . AB=0.3;ABP=23.8564;AC=3;AF=0.5;AN=6;AO=18;CIGAR=1X;DP=60;DPB=60;DPRA=0;EPP=42.0968;EPPR=94.2121;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=721;QR=1680;RO=42;RPL=0;RPP=42.0968;RPPR=94.2121;RPR=18;RUN=1;SAF=18;SAP=42.0968;SAR=0;SRF=42;SRP=94.2121;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:29:17,12:17:670:12:485:-35.2716,0,-51.8984 0/1:8:6,2:6:242:2:78:-4.99454,0,-19.7487 0/1:23:19,4:19:768:4:158:-7.67628,0,-62.517 dDocent_Contig_1626 25 . C T 69.2258 . AB=0.235294;ABP=13.3567;AC=1;AF=0.166667;AN=6;AO=10;CIGAR=1X;DP=122;DPB=122;DPRA=0;EPP=24.725;EPPR=246.215;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=3.46945e-18;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=371;QR=4443;RO=112;RPL=0;RPP=24.725;RPPR=246.215;RPR=10;RUN=1;SAF=10;SAP=24.725;SAR=0;SRF=112;SRP=246.215;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:60:58,2:58:2293:2:78:0,-10.6585,-199.124 0/1:17:13,4:13:522:4:150:-8.74581,0,-42.2093 0/0:45:41,4:41:1628:4:143:0,-0.329329,-133.539 dDocent_Contig_1627 12 . T C 6269.54 . AB=0.666667;ABP=75.3927;AC=3;AF=0.5;AN=6;AO=200;CIGAR=1X;DP=300;DPB=300;DPRA=0;EPP=437.305;EPPR=220.158;GTI=0;LEN=1;MEANALT=1;MQM=59.435;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=8040;QR=3994;RO=100;RPL=0;RPP=437.305;RPPR=220.158;RPR=200;RUN=1;SAF=200;SAP=437.305;SAR=0;SRF=100;SRP=220.158;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:158:60,98:60:2417:98:3946:-307.143,0,-170.112 0/1:48:11,37:11:422:37:1470:-118.083,0,-23.8765 0/1:94:29,65:29:1155:65:2624:-207.251,0,-75.9342 dDocent_Contig_1628 17 . G T 162.206 . AB=0.104247;ABP=355.351;AC=2;AF=0.333333;AN=6;AO=30;CIGAR=1X;DP=323;DPB=323;DPRA=0;EPP=68.1545;EPPR=639.252;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=1200;QR=11550;RO=293;RPL=0;RPP=68.1545;RPPR=639.252;RPR=30;RUN=1;SAF=30;SAP=68.1545;SAR=0;SRF=293;SRP=639.252;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:160:145,15:145:5715:15:596:-5.81326,0,-466.025 0/0:64:61,3:61:2402:3:122:0,-7.89343,-204.978 0/1:99:87,12:87:3433:12:482:-13.9302,0,-279.222 dDocent_Contig_1629 98 . N G 62.694 . AB=0;ABP=0;AC=2;AF=1;AN=2;AO=2;CIGAR=1X;DP=2;DPB=2;DPRA=0;EPP=7.35324;EPPR=0;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=0;NS=1;NUMALT=1;ODDS=5.99146;PAIRED=1;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=66;QR=0;RO=0;RPL=2;RPP=7.35324;RPPR=0;RPR=0;RUN=1;SAF=2;SAP=7.35324;SAR=0;SRF=0;SRP=0;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL ./.:.:.:.:.:.:.:. 1/1:2:0,2:0:0:2:66:-6.26831,-0.60206,0 ./.:.:.:.:.:.:.:. dDocent_Contig_1630 23 . A G 58.2884 . AB=0.101852;ABP=151.716;AC=1;AF=0.166667;AN=6;AO=11;CIGAR=1X;DP=162;DPB=162;DPRA=4;EPP=26.8965;EPPR=330.903;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=6.93889e-18;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=439;QR=6023;RO=151;RPL=0;RPP=26.8965;RPPR=330.903;RPR=11;RUN=1;SAF=11;SAP=26.8965;SAR=0;SRF=151;SRP=330.903;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:108:97,11:97:3863:11:439:-7.35172,0,-315.162 0/0:14:14,0:14:549:0:0:0,-4.21442,-49.7466 0/0:40:40,0:40:1611:0:0:0,-12.0412,-145.223 dDocent_Contig_1631 77 . G A 108.242 . AB=0.21875;ABP=24.9965;AC=2;AF=0.333333;AN=6;AO=7;CIGAR=1X;DP=61;DPB=61;DPRA=0.551724;EPP=18.2106;EPPR=120.27;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=1.73472e-18;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=242;QR=1780;RO=54;RPL=7;RPP=18.2106;RPPR=120.27;RPR=0;RUN=1;SAF=7;SAP=18.2106;SAR=0;SRF=54;SRP=120.27;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:29:29,0:29:952:0:0:0,-8.72987,-85.9813 0/1:11:10,1:10:333:1:35:-0.187299,0,-26.9819 0/1:21:15,6:15:495:6:207:-12.6459,0,-38.5449 dDocent_Contig_1633 63 . G T 8173.58 . AB=0.870748;ABP=178.515;AC=5;AF=0.833333;AN=6;AO=260;CIGAR=1X;DP=289;DPB=289;DPRA=0;EPP=567.593;EPPR=65.983;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=9978;QR=1119;RO=29;RPL=260;RPP=567.593;RPPR=65.983;RPR=0;RUN=1;SAF=260;SAP=567.593;SAR=0;SRF=29;SRP=65.983;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:147:19,128:19:735:128:4900:-396.776,0,-22.2297 1/1:49:4,45:4:151:45:1747:-143.513,-0.79293,0 1/1:93:6,87:6:233:87:3331:-278.591,-6.65571,0 dDocent_Contig_1634 22 . G A 435.785 . AB=0.232558;ABP=56.4386;AC=2;AF=0.333333;AN=6;AO=25;CIGAR=1X;DP=174;DPB=174;DPRA=0;EPP=57.2971;EPPR=326.56;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=998;QR=5902;RO=149;RPL=0;RPP=57.2971;RPPR=326.56;RPR=25;RUN=1;SAF=25;SAP=57.2971;SAR=0;SRF=149;SRP=326.56;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:88:83,5:83:3306:5:195:0,-8.57024,-279.675 0/1:20:17,3:17:678:3:121:-5.2596,0,-55.3258 0/1:66:49,17:49:1918:17:682:-41.8417,0,-152.947 dDocent_Contig_1635 16 . A C 152.912 . AB=0.0964467;ABP=560.34;AC=3;AF=0.5;AN=6;AO=38;CIGAR=1X2M1X;DP=394;DPB=394;DPRA=0;EPP=85.5263;EPPR=689.196;GTI=0;LEN=1;MEANALT=5;MQM=50.9737;MQMR=59.8259;NS=3;NUMALT=3;ODDS=0;PAIRED=0.631579;PAIREDR=0.974684;PAO=0;PQA=0;PQR=0;PRO=0;QA=1486;QR=12419;RO=316;RPL=0;RPP=85.5263;RPPR=689.196;RPR=38;RUN=1;SAF=38;SAP=85.5263;SAR=0;SRF=316;SRP=689.196;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|1:151:123,12,3,9:123:4862:12,3,9:466,122,363:-0.430721,0,-396.485,-27.3921,-390.034,-426.593,-7.52876,-370.175,-397.574,-404.928 0|1:126:103,15,2,0:103:4018:15,2,0:583,64,0:-11.3813,0,-324.144,-37.2335,-323.504,-365.288,-42.3874,-328.659,-365.89,-371.045 0|1:117:90,11,7,1:90:3539:11,7,1:437,283,41:-7.42894,0,-287.775,-11.1832,-267.753,-300.17,-31.2032,-287.769,-298.959,-321.992 dDocent_Contig_1636 12 . G A 171.802 . AB=0.15942;ABP=72.5289;AC=1;AF=0.166667;AN=6;AO=11;CIGAR=1X;DP=259;DPB=259;DPRA=0.726316;EPP=26.8965;EPPR=541.535;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=438;QR=9911;RO=248;RPL=0;RPP=26.8965;RPPR=541.535;RPR=11;RUN=1;SAF=11;SAP=26.8965;SAR=0;SRF=248;SRP=541.535;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:172:172,0:172:6899:0:0:0,-51.7772,-620.577 0/0:18:18,0:18:699:0:0:0,-5.41854,-63.2308 0/1:69:58,11:58:2313:11:438:-19.0041,0,-187.557 dDocent_Contig_1637 49 . T C 772.093 . AB=0.271186;ABP=56.6714;AC=3;AF=0.5;AN=6;AO=32;CIGAR=1X;DP=118;DPB=118;DPRA=0;EPP=72.4974;EPPR=189.757;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=1302;QR=3416;RO=86;RPL=0;RPP=72.4974;RPPR=189.757;RPR=32;RUN=1;SAF=32;SAP=72.4974;SAR=0;SRF=86;SRP=189.757;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:49:35,14:35:1398:14:566:-36.5323,0,-111.319 0/1:32:24,8:24:935:8:328:-20.2574,0,-74.807 0/1:37:27,10:27:1083:10:408:-25.9425,0,-86.6221 dDocent_Contig_1638 17 . G C 27916.5 . AB=0;ABP=0;AC=6;AF=1;AN=6;AO=815;CIGAR=1X;DP=866;DPB=866;DPRA=0;EPP=1772.76;EPPR=94.2121;GTI=0;LEN=1;MEANALT=1.66667;MQM=59.9411;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=0.986503;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=32710;QR=1640;RO=42;RPL=0;RPP=1772.76;RPPR=94.2121;RPR=815;RUN=1;SAF=815;SAP=1772.76;SAR=0;SRF=42;SRP=94.2121;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 1/1:555:22,527:22:868:527:21123:-1818.97,-87.23,0 1/1:119:10,106:10:375:106:4238:-347.287,-1.23054,0 1/1:192:10,182:10:397:182:7349:-624.913,-21.7104,0 dDocent_Contig_1639 112 . G T 206.324 . AB=0.282051;ABP=19.1015;AC=3;AF=0.5;AN=6;AO=11;CIGAR=1X1M3I1M1X3M1X1M2D1M;DP=39;DPB=39.9167;DPRA=0;EPP=26.8965;EPPR=63.8115;GTI=0;LEN=1;MEANALT=1;MQM=55.0909;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=0;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=423;QR=946;RO=28;RPL=0;RPP=26.8965;RPPR=63.8115;RPR=11;RUN=1;SAF=11;SAP=26.8965;SAR=0;SRF=0;SRP=63.8115;SRR=28;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|1:20:14,6:14:472:6:233:-15.3195,0,-36.7827 0|1:8:5,3:5:170:3:112:-8.03825,0,-13.2268 0|1:11:9,2:9:304:2:78:-2.77384,0,-24.3778 dDocent_Contig_1640 42 . A C 193.321 . AB=0.307692;ABP=11.3621;AC=1;AF=0.166667;AN=6;AO=17;CIGAR=1X;DP=173;DPB=173;DPRA=0;EPP=39.9253;EPPR=341.76;GTI=0;LEN=1;MEANALT=1;MQM=59.8235;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=0;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=672;QR=6100;RO=156;RPL=0;RPP=39.9253;RPPR=341.76;RPR=17;RUN=1;SAF=17;SAP=39.9253;SAR=0;SRF=156;SRP=341.76;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:95:88,7:88:3429:7:279:0,-3.11758,-283.221 0/1:26:18,8:18:693:8:318:-21.156,0,-54.8705 0/0:52:50,2:50:1978:2:75:0,-8.53322,-171.108 dDocent_Contig_1641 8 . A G 92.8205 . AB=0.363636;ABP=4.78696;AC=1;AF=0.166667;AN=6;AO=8;CIGAR=1X;DP=88;DPB=88;DPRA=1.59524;EPP=20.3821;EPPR=176.728;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=0.125;PAIREDR=0.9625;PAO=0;PQA=0;PQR=0;PRO=0;QA=306;QR=3074;RO=80;RPL=0;RPP=20.3821;RPPR=176.728;RPR=8;RUN=1;SAF=8;SAP=20.3821;SAR=0;SRF=80;SRP=176.728;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:56:52,4:52:2002:4:150:0,-2.99301,-166.552 0/1:11:7,4:7:269:4:156:-11.106,0,-21.2633 0/0:21:21,0:21:803:0:0:0,-6.32163,-72.5951 dDocent_Contig_1642 29 . G T 55.3618 . AB=0.138889;ABP=43.7857;AC=1;AF=0.166667;AN=6;AO=7;CIGAR=1X;DP=145;DPB=145;DPRA=1.76562;EPP=18.2106;EPPR=302.673;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=277;QR=5417;RO=138;RPL=0;RPP=18.2106;RPPR=302.673;RPR=7;RUN=1;SAF=7;SAP=18.2106;SAR=0;SRF=138;SRP=302.673;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:77:75,2:75:2951:2:79:0,-15.6817,-258.221 0/0:32:32,0:32:1246:0:0:0,-9.63296,-112.427 0/1:36:31,5:31:1220:5:198:-7.36009,0,-99.247 dDocent_Contig_1643 38 . T C 417.103 . AB=0.131474;ABP=299.101;AC=1;AF=0.166667;AN=6;AO=39;CIGAR=1X;DP=403;DPB=403;DPRA=0;EPP=87.6977;EPPR=793.426;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=0.986264;PAO=0;PQA=0;PQR=0;PRO=0;QA=1556;QR=14521;RO=364;RPL=0;RPP=87.6977;RPPR=793.426;RPR=39;RUN=1;SAF=39;SAP=87.6977;SAR=0;SRF=364;SRP=793.426;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:251:218,33:218:8689:33:1317:-43.2332,0,-705.945 0/0:72:70,2:70:2812:2:77:0,-14.3653,-245.877 0/0:80:76,4:76:3020:4:162:0,-9.11544,-256.922 dDocent_Contig_1645 136 . N G 190.778 . AB=0;ABP=0;AC=4;AF=1;AN=4;AO=5;CIGAR=1X;DP=5;DPB=5;DPRA=0;EPP=13.8677;EPPR=0;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=0;NS=2;NUMALT=1;ODDS=0;PAIRED=0.2;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=200;QR=0;RO=0;RPL=5;RPP=13.8677;RPPR=0;RPR=0;RUN=1;SAF=0;SAP=13.8677;SAR=5;SRF=0;SRP=0;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 1/1:2:0,2:0:0:2:78:-7.40347,-0.60206,0 ./.:.:.:.:.:.:.:. 1/1:3:0,3:0:0:3:122:-11.3725,-0.90309,0 dDocent_Contig_1646 13 . C A 94.2481 . AB=0.24;ABP=17.6895;AC=1;AF=0.166667;AN=6;AO=8;CIGAR=1X;DP=196;DPB=196;DPRA=0.303279;EPP=20.3821;EPPR=411.247;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=285;QR=7525;RO=188;RPL=0;RPP=20.3821;RPPR=411.247;RPR=8;RUN=1;SAF=8;SAP=20.3821;SAR=0;SRF=188;SRP=411.247;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:122:122,0:122:4905:0:0:0,-36.7257,-441.332 0/1:25:19,6:19:751:6:205:-11.2487,0,-60.383 0/0:49:47,2:47:1869:2:80:0,-7.15889,-160.816 dDocent_Contig_1647 16 . T C 7532.67 . AB=0.720539;ABP=128.48;AC=4;AF=0.666667;AN=6;AO=237;CIGAR=1X;DP=322;DPB=322;DPRA=0;EPP=517.649;EPPR=187.585;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=9472;QR=3408;RO=85;RPL=0;RPP=517.649;RPPR=187.585;RPR=237;RUN=1;SAF=237;SAP=517.649;SAR=0;SRF=85;SRP=187.585;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:208:58,150:58:2329:150:6034:-480.203,0,-147.15 1/1:25:2,23:2:68:23:872:-72.3098,-1.06876,0 0/1:89:25,64:25:1011:64:2566:-204.277,0,-64.4924 dDocent_Contig_1648 8 . A G 326.005 . AB=0.266667;ABP=31.3842;AC=3;AF=0.5;AN=6;AO=16;CIGAR=1X;DP=60;DPB=60;DPRA=0;EPP=37.7539;EPPR=98.5551;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=0.4375;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=612;QR=1682;RO=44;RPL=0;RPP=37.7539;RPPR=98.5551;RPR=16;RUN=1;SAF=16;SAP=37.7539;SAR=0;SRF=44;SRP=98.5551;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:30:22,8:22:834:8:308:-19.0509,0,-66.3504 0/1:11:9,2:9:351:2:77:-3.99781,0,-28.6405 0/1:19:13,6:13:497:6:227:-15.0732,0,-39.3576 dDocent_Contig_1649 120 . A G 7943.83 . AB=0.823899;ABP=292.786;AC=4;AF=0.666667;AN=6;AO=286;CIGAR=1X;DP=342;DPB=342;DPRA=0;EPP=624.051;EPPR=124.613;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=9922;QR=1913;RO=56;RPL=0;RPP=624.051;RPPR=124.613;RPR=286;RUN=1;SAF=0;SAP=624.051;SAR=286;SRF=0;SRP=124.613;SRR=56;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:225:45,180:45:1526:180:6274:-497.03,0,-69.8894 1/1:24:0,24:0:0:24:828:-74.8312,-7.22472,0 0/1:93:11,82:11:387:82:2820:-226.045,0,-7.17141 dDocent_Contig_1651 8 . G A 5378.37 . AB=0.675105;ABP=66.1296;AC=5;AF=0.833333;AN=6;AO=160;CIGAR=1X4M;DP=237;DPB=237;DPRA=0;EPP=350.446;EPPR=76.8404;GTI=0;LEN=1;MEANALT=2.33333;MQM=60;MQMR=60;NS=3;NUMALT=2;ODDS=2.77556e-17;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=6131;QR=1320;RO=34;RPL=0;RPP=350.446;RPPR=76.8404;RPR=160;RUN=1;SAF=160;SAP=350.446;SAR=0;SRF=34;SRP=76.8404;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 1|1:124:18,28,77:18:692:28,77:1110,2925:-269.008,-183.052,-231.431,-34.5747,0,-68.1975 1|1:32:2,7,23:2:78:7,23:271,884:-87.816,-66.1554,-70.4603,-15.8475,0,-15.3361 0|1:81:14,7,60:14:550:7,60:265,2322:-186.536,-169.029,-212.161,0,-23.5296,-27.1856 dDocent_Contig_1652 8 . A G 47.5128 . AB=0.114754;ABP=81.6461;AC=1;AF=0.166667;AN=6;AO=10;CIGAR=1X;DP=267;DPB=267;DPRA=1.88393;EPP=24.725;EPPR=561.079;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=390;QR=9858;RO=257;RPL=0;RPP=24.725;RPPR=561.079;RPR=10;RUN=1;SAF=10;SAP=24.725;SAR=0;SRF=257;SRP=561.079;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:150:147,3:147:5651:3:117:0,-34.2441,-497.646 0/1:61:54,7:54:2079:7:273:-6.57518,0,-168.978 0/0:56:56,0:56:2128:0:0:0,-16.8577,-191.742 dDocent_Contig_1653 26 . T C 54.3377 . AB=0.16;ABP=28.1125;AC=1;AF=0.166667;AN=6;AO=4;CIGAR=1X;DP=67;DPB=67;DPRA=1.19048;EPP=11.6962;EPPR=139.813;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=160;QR=2325;RO=63;RPL=0;RPP=11.6962;RPPR=139.813;RPR=4;RUN=1;SAF=4;SAP=11.6962;SAR=0;SRF=63;SRP=139.813;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:34:34,0:34:1301:0:0:0,-10.235,-117.379 0/0:8:8,0:8:275:0:0:0,-2.40824,-25.0807 0/1:25:21,4:21:749:4:160:-7.25768,0,-60.1944 dDocent_Contig_1654 10 . A C 1562.54 . AB=0.0440806;ABP=1436.55;AC=0;AF=0;AN=6;AO=35;CIGAR=2M1X;DP=794;DPB=756.333;DPRA=0;EPP=79.0118;EPPR=1381.9;GTI=0;LEN=1;MEANALT=4;MQM=55.0286;MQMR=59.9323;NS=3;NUMALT=2;ODDS=0;PAIRED=1;PAIREDR=0.998425;PAO=0;PQA=0;PQR=0;PRO=0;QA=1394;QR=24480;RO=635;RPL=0;RPP=79.0118;RPPR=1381.9;RPR=35;RUN=1;SAF=35;SAP=79.0118;SAR=0;SRF=635;SRP=1381.9;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|0:519:426,73,11:426:16442:73,11:2769,437:-98.7087,0,-1327.65,-196.392,-1319.07,-1542.69 0|0:59:46,7,6:46:1752:7,6:268,243:-8.13529,0,-141.58,-1.97914,-123.691,-143.879 0|0:216:163,33,18:163:6286:33,18:1267,714:-54.9309,0,-506.255,-45.5115,-457.704,-556.29 dDocent_Contig_1655 15 . C A 259.794 . AB=0.333333;ABP=10.9724;AC=2;AF=0.333333;AN=6;AO=11;CIGAR=1X;DP=43;DPB=43;DPRA=1.65;EPP=26.8965;EPPR=72.4974;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=430;QR=1279;RO=32;RPL=0;RPP=26.8965;RPPR=72.4974;RPR=11;RUN=1;SAF=11;SAP=26.8965;SAR=0;SRF=32;SRP=72.4974;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:17:13,4:13:524:4:153:-9.01951,0,-42.3895 0/1:16:9,7:9:357:7:277:-20.4827,0,-27.6762 0/0:10:10,0:10:398:0:0:0,-3.0103,-36.1786 dDocent_Contig_1656 8 . A G 153.355 . AB=0.185185;ABP=49.4959;AC=2;AF=0.333333;AN=6;AO=11;CIGAR=1X;DP=83;DPB=83;DPRA=0;EPP=26.8965;EPPR=159.356;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=421;QR=2728;RO=72;RPL=0;RPP=26.8965;RPPR=159.356;RPR=11;RUN=1;SAF=11;SAP=26.8965;SAR=0;SRF=72;SRP=159.356;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:37:31,6:31:1193:6:232:-10.1108,0,-96.5274 0/1:17:13,4:13:498:4:150:-8.7476,0,-40.0493 0/0:29:28,1:28:1037:1:39:0,-4.83331,-89.7376 dDocent_Contig_1658 30 . C G 54.2251 . AB=0.108696;ABP=125.368;AC=1;AF=0.166667;AN=6;AO=13;CIGAR=2X;DP=188;DPB=188;DPRA=1.06667;EPP=31.2394;EPPR=383.018;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=495;QR=6910;RO=175;RPL=0;RPP=31.2394;RPPR=383.018;RPR=13;RUN=1;SAF=13;SAP=31.2394;SAR=0;SRF=175;SRP=383.018;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|1:92:82,10:82:3256:10:381:-6.94449,0,-265.428 0|0:36:33,3:33:1295:3:114:0,-0.206991,-106.191 0|0:60:60,0:60:2359:0:0:0,-18.0618,-212.474 dDocent_Contig_1659 34 . T A 12603.4 . AB=0.886842;ABP=496.94;AC=4;AF=0.666667;AN=6;AO=393;CIGAR=1X;DP=440;DPB=440;DPRA=0;EPP=856.399;EPPR=105.07;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=15482;QR=1866;RO=47;RPL=0;RPP=856.399;RPPR=105.07;RPR=393;RUN=1;SAF=393;SAP=856.399;SAR=0;SRF=47;SRP=105.07;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:267:26,241:26:1023:241:9494:-773.555,0,-11.9831 1/1:60:4,56:4:160:56:2201:-183.487,-3.27837,0 0/1:113:17,96:17:683:96:3787:-306.822,0,-27.7841 dDocent_Contig_1660 93 . C T 82.2529 . AB=0.170732;ABP=41.6201;AC=1;AF=0.166667;AN=6;AO=25;CIGAR=1X;DP=290;DPB=290;DPRA=1.91667;EPP=57.2971;EPPR=578.45;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=864;QR=9186;RO=265;RPL=25;RPP=57.2971;RPPR=578.45;RPR=0;RUN=1;SAF=25;SAP=57.2971;SAR=0;SRF=265;SRP=578.45;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:189:171,18:171:5931:18:619:0,-0.86119,-477.903 0/1:41:34,7:34:1183:7:245:-10.049,0,-94.4354 0/0:60:60,0:60:2072:0:0:0,-18.0618,-186.755 dDocent_Contig_1661 32 . A T 31.5718 . AB=0.0955414;ABP=226.091;AC=3;AF=0.5;AN=6;AO=15;CIGAR=1X;DP=157;DPB=157;DPRA=0;EPP=35.5824;EPPR=311.359;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=608;QR=5616;RO=142;RPL=0;RPP=35.5824;RPPR=311.359;RPR=15;RUN=1;SAF=15;SAP=35.5824;SAR=0;SRF=142;SRP=311.359;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:100:91,9:91:3595:9:362:-2.84069,0,-293.48 0/1:15:13,2:13:524:2:82:-3.26423,0,-42.9915 0/1:42:38,4:38:1497:4:164:-2.50664,0,-122.337 dDocent_Contig_1662 95 . A T 967.25 . AB=0.58209;ABP=6.93191;AC=3;AF=0.5;AN=6;AO=39;CIGAR=1X;DP=67;DPB=67;DPRA=0;EPP=87.6977;EPPR=63.8115;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=1344;QR=976;RO=28;RPL=39;RPP=87.6977;RPPR=63.8115;RPR=0;RUN=1;SAF=39;SAP=87.6977;SAR=0;SRF=28;SRP=63.8115;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:41:19,22:19:663:22:746:-55.1092,0,-47.6517 0/1:6:1,5:1:34:5:179:-14.6542,0,-1.59273 0/1:20:8,12:8:279:12:419:-32.0239,0,-19.4284 dDocent_Contig_1663 141 . T G 64.9288 . AB=0.375;ABP=4.09604;AC=1;AF=0.166667;AN=6;AO=3;CIGAR=1X;DP=39;DPB=39;DPRA=0.516129;EPP=9.52472;EPPR=81.1833;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=115;QR=1338;RO=36;RPL=0;RPP=9.52472;RPPR=81.1833;RPR=3;RUN=1;SAF=0;SAP=9.52472;SAR=3;SRF=0;SRP=81.1833;SRR=36;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:21:21,0:21:772:0:0:0,-6.32163,-69.7951 0/0:10:10,0:10:378:0:0:0,-3.0103,-34.3732 0/1:8:5,3:5:188:3:115:-8.31679,0,-14.8759 dDocent_Contig_1665 9 . G C 3740.99 . AB=0.82;ABP=136.426;AC=3;AF=0.5;AN=6;AO=123;CIGAR=1X;DP=150;DPB=150;DPRA=0;EPP=270.101;EPPR=61.6401;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=4711;QR=1037;RO=27;RPL=0;RPP=270.101;RPPR=61.6401;RPR=123;RUN=1;SAF=123;SAP=270.101;SAR=0;SRF=27;SRP=61.6401;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:101:16,85:16:621:85:3279:-264.844,0,-25.8262 0/1:10:4,6:4:148:6:225:-17.5995,0,-10.6712 0/1:39:7,32:7:268:32:1207:-97.1786,0,-12.7437 dDocent_Contig_1666 81 . C T 116.922 . AB=0.216216;ABP=28.8919;AC=2;AF=0.333333;AN=6;AO=9;CIGAR=1X;DP=52;DPB=52;DPRA=0;EPP=22.5536;EPPR=96.3836;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=316;QR=1436;RO=43;RPL=9;RPP=22.5536;RPPR=96.3836;RPR=0;RUN=1;SAF=9;SAP=22.5536;SAR=0;SRF=43;SRP=96.3836;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:26:20,6:20:645:6:215:-11.8724,0,-50.5244 0/1:11:9,2:9:314:2:70:-3.336,0,-25.286 0/0:15:14,1:14:477:1:31:0,-1.416,-40.156 dDocent_Contig_1668 65 . A G 221.349 . AB=0.25;ABP=26.8965;AC=3;AF=0.5;AN=6;AO=11;CIGAR=1X;DP=44;DPB=44;DPRA=0;EPP=26.8965;EPPR=74.6689;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=440;QR=1308;RO=33;RPL=11;RPP=26.8965;RPPR=74.6689;RPR=0;RUN=1;SAF=11;SAP=26.8965;SAR=0;SRF=33;SRP=74.6689;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:26:18,8:18:724:8:317:-21.0673,0,-57.6587 0/1:7:6,1:6:234:1:41:-1.98736,0,-19.3194 0/1:11:9,2:9:350:2:82:-4.46835,0,-28.5408 dDocent_Contig_1669 19 . T C 48.0569 . AB=0.142857;ABP=34.0313;AC=1;AF=0.166667;AN=6;AO=6;CIGAR=1X;DP=206;DPB=206;DPRA=0.324;EPP=16.0391;EPPR=437.305;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=235;QR=7972;RO=200;RPL=0;RPP=16.0391;RPPR=437.305;RPR=6;RUN=1;SAF=6;SAP=16.0391;SAR=0;SRF=200;SRP=437.305;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:125:125,0:125:5016:0:0:0,-37.6287,-451.307 0/1:28:24,4:24:943:4:163:-6.62959,0,-76.7319 0/0:53:51,2:51:2013:2:72:0,-9.12027,-174.525 dDocent_Contig_1670 19 . G A 87.8686 . AB=0.131579;ABP=92.6121;AC=1;AF=0.166667;AN=6;AO=10;CIGAR=1X;DP=119;DPB=119;DPRA=3.53488;EPP=24.725;EPPR=239.701;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=3.46945e-18;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=365;QR=4354;RO=109;RPL=0;RPP=24.725;RPPR=239.701;RPR=10;RUN=1;SAF=10;SAP=24.725;SAR=0;SRF=109;SRP=239.701;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:76:66,10:66:2619:10:365:-10.3097,0,-212.959 0/0:8:8,0:8:324:0:0:0,-2.40824,-29.5294 0/0:35:35,0:35:1411:0:0:0,-10.536,-127.235 dDocent_Contig_1671 32 . T G 5189.58 . AB=0.591241;ABP=12.9167;AC=4;AF=0.666667;AN=6;AO=165;CIGAR=1X;DP=229;DPB=229;DPRA=0;EPP=361.303;EPPR=139.813;GTI=0;LEN=1;MEANALT=1.33333;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=6508;QR=1934;RO=63;RPL=0;RPP=361.303;RPPR=139.813;RPR=165;RUN=1;SAF=165;SAP=361.303;SAR=0;SRF=63;SRP=139.813;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 1/1:92:8,84:8:249:84:3337:-277.665,-4.97786,0 0/1:50:16,33:16:473:33:1235:-96.5699,0,-28.0119 0/1:87:39,48:39:1212:48:1936:-148.246,0,-83.1684 dDocent_Contig_1674 22 . A T 166.762 . AB=0.188679;ABP=47.6279;AC=1;AF=0.166667;AN=6;AO=11;CIGAR=1X;DP=103;DPB=103;DPRA=8.08333;EPP=26.8965;EPPR=202.786;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=420;QR=3667;RO=92;RPL=0;RPP=26.8965;RPPR=202.786;RPR=11;RUN=1;SAF=11;SAP=26.8965;SAR=0;SRF=92;SRP=202.786;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:44:43,1:43:1727:1:41:0,-9.15075,-151.558 0/0:6:6,0:6:238:0:0:0,-1.80618,-21.793 0/1:53:43,10:43:1702:10:379:-18.5001,0,-137.455 dDocent_Contig_1675 25 . C A 1295.86 . AB=0.457143;ABP=4.12706;AC=4;AF=0.666667;AN=6;AO=42;CIGAR=2M2X7M;DP=80;DPB=78.3636;DPRA=0;EPP=94.2121;EPPR=70.3259;GTI=0;LEN=1;MEANALT=2;MQM=60;MQMR=60;NS=3;NUMALT=2;ODDS=6.93889e-18;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=1687;QR=1218;RO=31;RPL=0;RPP=94.2121;RPPR=70.3259;RPR=42;RUN=1;SAF=42;SAP=94.2121;SAR=0;SRF=31;SRP=70.3259;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|1:42:17,5,19:17:673:5,19:197,755:-57.0408,-45.9516,-99.8328,0,-39.1808,-49.6682 1|1:10:0,0,10:0:0:0,10:0,403:-36.6301,-36.6301,-36.6301,-3.0103,-3.0103,0 0|1:28:14,1,13:14:545:1,13:39,529:-39.438,-40.4477,-84.9264,0,-41.5822,-40.8747 dDocent_Contig_1676 129 . T A 296.656 . AB=0;ABP=0;AC=0;AF=0;AN=6;AO=6;CIGAR=1X3M1X;DP=386;DPB=386;DPRA=0.528736;EPP=16.0391;EPPR=736.968;GTI=0;LEN=1;MEANALT=4;MQM=60;MQMR=50.4556;NS=3;NUMALT=2;ODDS=0;PAIRED=1;PAIREDR=0.988166;PAO=0;PQA=0;PQR=0;PRO=0;QA=209;QR=11341;RO=338;RPL=0;RPP=16.0391;RPPR=736.968;RPR=6;RUN=1;SAF=0;SAP=16.0391;SAR=6;SRF=0;SRP=736.968;SRR=338;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|0:120:94,0,22:94:3147:0,22:0,753:-31.1885,-59.4853,-297.491,0,-238.021,-231.398 0|0:174:168,0,4:168:5647:0,4:0,134:0,-50.573,-495.865,-39.9756,-485.348,-484.144 0|0:92:76,6,7:76:2547:6,7:209,244:0,-5.85916,-207.207,-3.41457,-189.573,-204.464 dDocent_Contig_1678 7 . T C 39.6778 . AB=0.125;ABP=51.8684;AC=1;AF=0.166667;AN=6;AO=7;CIGAR=1X;DP=134;DPB=134;DPRA=5.59091;EPP=18.2106;EPPR=278.787;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=271;QR=4859;RO=127;RPL=0;RPP=18.2106;RPPR=278.787;RPR=7;RUN=1;SAF=7;SAP=18.2106;SAR=0;SRF=127;SRP=278.787;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:83:81,2:81:3093:2:77:0,-17.6763,-271.213 0/0:11:11,0:11:414:0:0:0,-3.31133,-37.6096 0/1:40:35,5:35:1352:5:194:-5.79164,0,-109.924 dDocent_Contig_1679 60 . C G 17506.2 . AB=0.02875;ABP=1546.16;AC=0;AF=0;AN=6;AO=23;CIGAR=2X3M;DP=800;DPB=800;DPRA=0;EPP=52.9542;EPPR=181.071;GTI=0;LEN=1;MEANALT=7.66667;MQM=60;MQMR=60;NS=3;NUMALT=4;ODDS=1.11022e-16;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=843;QR=3106;RO=82;RPL=23;RPP=52.9542;RPPR=181.071;RPR=0;RUN=1;SAF=23;SAP=52.9542;SAR=0;SRF=82;SRP=181.071;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|0:355:39,23,8,18,244:39:1494:23,8,18,244:898,313,676,9689:-785.835,-723.759,-839.422,-771.84,-820.611,-892.02,-742.201,-790.972,-839.053,-859.37,0,-48.7693,-96.8522,-67.2145,-49.1368 0|0:199:8,23,17,4,129:8:285:23,17,4,129:884,652,149,5122:-468.584,-398.428,-414.723,-417.483,-368.137,-435.584,-458.797,-409.451,-428.506,-480.812,-49.3498,0,-19.0552,-60.3715,-33.7338 0|0:246:35,31,5,1,158:35:1327:31,5,1,158:1172,190,18,6227:-501.725,-416.202,-515.655,-496.681,-509.406,-603.961,-510.943,-523.669,-604.148,-619.427,0,-12.7258,-93.2052,-107.469,-61.2231 dDocent_Contig_1681 124 . G A 4540.46 . AB=0.791946;ABP=113.318;AC=4;AF=0.666667;AN=6;AO=183;CIGAR=1X;DP=222;DPB=222;DPRA=0;EPP=400.39;EPPR=85.5263;GTI=0;LEN=1;MEANALT=1.33333;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=1.38778e-17;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=5812;QR=1310;RO=38;RPL=0;RPP=400.39;RPPR=85.5263;RPR=183;RUN=1;SAF=0;SAP=400.39;SAR=183;SRF=0;SRP=85.5263;SRR=38;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:116:22,94:22:760:94:2967:-232.358,0,-33.8008 0/1:33:9,24:9:315:24:776:-60.2098,0,-18.7548 1/1:73:7,65:7:235:65:2069:-165.001,-0.54417,0 dDocent_Contig_1683 7 . A T 1196.69 . AB=0.258373;ABP=108.997;AC=3;AF=0.5;AN=6;AO=54;CIGAR=1X;DP=209;DPB=209;DPRA=0;EPP=120.27;EPPR=339.589;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=2079;QR=5930;RO=155;RPL=0;RPP=120.27;RPPR=339.589;RPR=54;RUN=1;SAF=54;SAP=120.27;SAR=0;SRF=155;SRP=339.589;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:117:86,31:86:3290:31:1199:-72.986,0,-261.025 0/1:35:28,7:28:1054:7:268:-13.9478,0,-84.6318 0/1:57:41,16:41:1586:16:612:-38.2585,0,-125.848 dDocent_Contig_1684 14 . T C 87.3097 . AB=0.0877193;ABP=87.1644;AC=0;AF=0;AN=6;AO=5;CIGAR=1M1X1M;DP=142;DPB=142;DPRA=2.59091;EPP=13.8677;EPPR=263.587;GTI=0;LEN=1;MEANALT=3;MQM=60;MQMR=60;NS=3;NUMALT=3;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=203;QR=4792;RO=120;RPL=0;RPP=13.8677;RPPR=263.587;RPR=5;RUN=1;SAF=5;SAP=13.8677;SAR=0;SRF=120;SRP=263.587;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|0:63:56,7,0,0:56:2242:7,0,0:273,0,0:-5.97189,0,-182.982,-22.8296,-185.089,-207.528,-22.8296,-185.089,-207.528,-207.528 0|0:22:21,1,0,0:21:842:1,0,0:40,0,0:0,-2.62698,-72.0998,-6.32163,-72.4008,-75.6958,-6.32163,-72.4008,-75.6958,-75.6958 0|0:57:43,6,5,3:43:1708:6,5,3:234,203,123:-6.28146,0,-138.792,-2.48003,-123.855,-141.582,-9.0708,-130.445,-132.934,-148.774 dDocent_Contig_1685 8 . G A 4590.05 . AB=0.772059;ABP=90.444;AC=4;AF=0.666667;AN=6;AO=148;CIGAR=1X;DP=180;DPB=180;DPRA=0;EPP=324.388;EPPR=72.4974;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=5627;QR=1228;RO=32;RPL=0;RPP=324.388;RPPR=72.4974;RPR=148;RUN=1;SAF=148;SAP=324.388;SAR=0;SRF=32;SRP=72.4974;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:102:18,84:18:701:84:3199:-257.357,0,-32.719 1/1:44:1,43:1:37:43:1626:-142.902,-9.54749,0 0/1:34:13,21:13:490:21:802:-62.2686,0,-34.2076 dDocent_Contig_1686 16 . A G 1880 . AB=0.567568;ABP=7.41193;AC=3;AF=0.5;AN=6;AO=63;CIGAR=1X;DP=111;DPB=111;DPRA=0;EPP=139.813;EPPR=107.241;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=2511;QR=1940;RO=48;RPL=0;RPP=139.813;RPPR=107.241;RPR=63;RUN=1;SAF=63;SAP=139.813;SAR=0;SRF=48;SRP=107.241;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:74:31,43:31:1254:43:1704:-131.311,0,-90.8521 0/1:9:3,6:3:123:6:245:-19.7202,0,-8.75552 0/1:28:14,14:14:563:14:562:-42.4918,0,-42.5835 dDocent_Contig_1687 114 . C T 5440 . AB=0;ABP=0;AC=0;AF=0;AN=6;AO=14;CIGAR=2X;DP=239;DPB=239;DPRA=0;EPP=33.4109;EPPR=44.2683;GTI=0;LEN=1;MEANALT=2;MQM=60;MQMR=60;NS=3;NUMALT=2;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=455;QR=624;RO=19;RPL=0;RPP=33.4109;RPPR=44.2683;RPR=14;RUN=1;SAF=0;SAP=33.4109;SAR=14;SRF=0;SRP=44.2683;SRR=19;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|0:155:13,10,132:13:415:10,132:316,4324:-351.713,-330.206,-360.62,-6.30851,-14.3158,0 0|0:16:0,1,15:0:0:1,15:34,480:-43.1678,-40.4085,-40.1075,-4.51545,-1.41757,0 0|0:68:6,3,59:6:209:3,59:105,1860:-148.516,-141.778,-157.874,-0.765207,-9.21701,0 dDocent_Contig_1688 11 . C A 187.949 . 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AB=0.438202;ABP=5.96253;AC=2;AF=0.333333;AN=6;AO=39;CIGAR=1X;DP=104;DPB=104;DPRA=2.96667;EPP=87.6977;EPPR=144.156;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=0.984615;PAO=0;PQA=0;PQR=0;PRO=0;QA=1320;QR=2226;RO=65;RPL=0;RPP=87.6977;RPPR=144.156;RPR=39;RUN=1;SAF=0;SAP=87.6977;SAR=39;SRF=0;SRP=144.156;SRR=65;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:76:40,36:40:1392:36:1214:-86.6737,0,-102.702 0/0:15:15,0:15:484:0:0:0,-4.51545,-43.8689 0/1:13:10,3:10:350:3:106:-5.97577,0,-27.9241 dDocent_Contig_1690 14 . G A 2522.49 . AB=0.229508;ABP=80.5425;AC=2;AF=0.333333;AN=6;AO=28;CIGAR=1X1M1X;DP=122;DPB=122;DPRA=0;EPP=63.8115;EPPR=50.7827;GTI=0;LEN=1;MEANALT=2;MQM=60;MQMR=60;NS=3;NUMALT=2;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=1129;QR=846;RO=22;RPL=0;RPP=63.8115;RPPR=50.7827;RPR=28;RUN=1;SAF=28;SAP=63.8115;SAR=0;SRF=22;SRP=50.7827;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 1|0:63:7,14,42:7:267:14,42:566,1646:-158.013,-113.453,-131.14,-24.784,0,-34.0364 1|0:17:1,3,13:1:39:3,13:116,512:-48.1433,-38.9183,-41.2208,-6.31815,0,-5.61148 0|0:42:14,11,17:14:540:11,17:447,678:-51.6151,-18.9583,-59.984,0,-7.45406,-39.2139 dDocent_Contig_1691 8 . G A 1229.95 . 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AB=0.2;ABP=10.8276;AC=1;AF=0.166667;AN=6;AO=3;CIGAR=1X;DP=31;DPB=31;DPRA=2.08333;EPP=9.52472;EPPR=63.8115;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=120;QR=1120;RO=28;RPL=3;RPP=9.52472;RPPR=63.8115;RPR=0;RUN=1;SAF=3;SAP=9.52472;SAR=0;SRF=28;SRP=63.8115;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:10:8,2:8:318:2:80:-4.58128,0,-25.9762 0/0:6:6,0:6:241:0:0:0,-1.80618,-22.0663 0/0:15:14,1:14:561:1:40:0,-0.519771,-46.8376 dDocent_Contig_1693 13 . C G 4622.86 . 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AB=0.340278;ABP=34.9189;AC=3;AF=0.5;AN=6;AO=49;CIGAR=3M1X1M;DP=144;DPB=146.4;DPRA=0;EPP=109.412;EPPR=183.243;GTI=0;LEN=1;MEANALT=2;MQM=60;MQMR=60;NS=3;NUMALT=2;ODDS=1.38778e-17;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=1965;QR=3286;RO=83;RPL=0;RPP=109.412;RPPR=183.243;RPR=49;RUN=1;SAF=49;SAP=109.412;SAR=0;SRF=83;SRP=183.243;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|1:81:47,8,26:47:1871:8,26:312,1035:-71.0704,-59.5787,-211.228,0,-128.424,-146.238 0|1:32:17,3,12:17:665:3,12:98,490:-35.3786,-32.6033,-86.3656,0,-46.8307,-51.1178 0|1:31:19,1,11:19:750:1,11:40,440:-30.523,-32.9475,-94.3509,0,-58.4075,-58.3915 dDocent_Contig_1698 16 . G C 74.2582 . 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T G 653.119 . AB=0.25;ABP=65.983;AC=3;AF=0.5;AN=6;AO=29;CIGAR=1X;DP=116;DPB=116;DPRA=0;EPP=65.983;EPPR=191.928;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=0.793103;PAIREDR=0.988506;PAO=0;PQA=0;PQR=0;PRO=0;QA=1163;QR=3449;RO=87;RPL=0;RPP=65.983;RPPR=191.928;RPR=29;RUN=1;SAF=29;SAP=65.983;SAR=0;SRF=87;SRP=191.928;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:71:52,19:52:2055:19:759:-47.2577,0,-163.751 0/1:17:12,5:12:484:5:203:-13.5353,0,-38.793 0/1:28:23,5:23:910:5:201:-10.0417,0,-73.7771 dDocent_Contig_1701 16 . G A 892.132 . AB=0.175439;ABP=107.317;AC=2;AF=0.333333;AN=6;AO=20;CIGAR=2X;DP=114;DPB=114;DPRA=0;EPP=46.4397;EPPR=141.985;GTI=0;LEN=1;MEANALT=2.33333;MQM=60;MQMR=60;NS=3;NUMALT=2;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=801;QR=2545;RO=64;RPL=0;RPP=46.4397;RPPR=141.985;RPR=20;RUN=1;SAF=20;SAP=46.4397;SAR=0;SRF=64;SRP=141.985;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|0:69:42,6,20:42:1679:6,20:238,797:-53.0205,-46.0695,-182.569,0,-118.742,-132.313 0|1:32:11,13,8:11:443:13,8:522,308:-39.7121,0,-32.6081,-17.7443,-11.2435,-51.8479 0|1:13:11,1,1:11:423:1,1:41,41:-0.0727506,0,-34.3981,0,-31.3129,-34.3981 dDocent_Contig_1702 39 . A T 5513.19 . AB=0.584229;ABP=20.2031;AC=4;AF=0.666667;AN=6;AO=163;CIGAR=1X3M;DP=279;DPB=279;DPRA=0;EPP=356.96;EPPR=115.927;GTI=0;LEN=1;MEANALT=3.33333;MQM=59.9939;MQMR=60;NS=3;NUMALT=2;ODDS=5.55112e-17;PAIRED=1;PAIREDR=0.826923;PAO=0;PQA=0;PQR=0;PRO=0;QA=6275;QR=2029;RO=52;RPL=0;RPP=356.96;RPPR=115.927;RPR=163;RUN=1;SAF=163;SAP=356.96;SAR=0;SRF=52;SRP=115.927;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|1:168:35,32,98:35:1368:32,98:1228,3762:-298.229,-207.985,-310.822,0,-11.6938,-82.9699 0|1:45:13,6,26:13:502:6,26:239,992:-77.4467,-61.6765,-101.099,0,-21.5341,-33.3915 1|1:66:4,22,39:4:159:22,39:857,1521:-181.166,-111.934,-118.403,-57.3525,0,-58.705 dDocent_Contig_1704 28 . T C 57.5882 . AB=0.173913;ABP=24.253;AC=1;AF=0.166667;AN=6;AO=4;CIGAR=1X;DP=187;DPB=187;DPRA=0.280488;EPP=11.6962;EPPR=400.39;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=157;QR=7259;RO=183;RPL=0;RPP=11.6962;RPPR=400.39;RPR=4;RUN=1;SAF=4;SAP=11.6962;SAR=0;SRF=183;SRP=400.39;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:98:98,0:98:3898:0:0:0,-29.5009,-350.817 0/1:23:19,4:19:736:4:157:-7.58273,0,-59.6289 0/0:66:66,0:66:2625:0:0:0,-19.868,-236.382 dDocent_Contig_1705 18 . G A 256.505 . AB=0.205882;ABP=54.1038;AC=2;AF=0.333333;AN=6;AO=14;CIGAR=1X;DP=80;DPB=80;DPRA=2.83333;EPP=33.4109;EPPR=146.327;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=544;QR=2622;RO=66;RPL=0;RPP=33.4109;RPPR=146.327;RPR=14;RUN=1;SAF=14;SAP=33.4109;SAR=0;SRF=66;SRP=146.327;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:58:46,12:46:1831:12:479:-26.0016,0,-147.54 0/0:12:12,0:12:477:0:0:0,-3.61236,-43.2811 0/1:10:8,2:8:314:2:65:-3.1619,0,-25.6114 dDocent_Contig_1706 62 . T C 30.9088 . AB=0.104478;ABP=94.0501;AC=2;AF=0.333333;AN=6;AO=7;CIGAR=1X;DP=86;DPB=86;DPRA=1.76316;EPP=18.2106;EPPR=174.557;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=279;QR=3161;RO=79;RPL=7;RPP=18.2106;RPPR=174.557;RPR=0;RUN=1;SAF=7;SAP=18.2106;SAR=0;SRF=79;SRP=174.557;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:47:42,5:42:1691:5:204:-4.59562,0,-138.258 0/0:19:19,0:19:760:0:0:0,-5.71957,-68.7203 0/1:20:18,2:18:710:2:75:-1.0982,0,-58.2055 dDocent_Contig_1707 34 . T C 2395.02 . AB=0.75;ABP=46.4397;AC=4;AF=0.666667;AN=6;AO=73;CIGAR=1X;DP=93;DPB=93;DPRA=0;EPP=161.528;EPPR=46.4397;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=2958;QR=805;RO=20;RPL=0;RPP=161.528;RPPR=46.4397;RPR=73;RUN=1;SAF=73;SAP=161.528;SAR=0;SRF=20;SRP=46.4397;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:68:14,54:14:560:54:2183:-176.16,0,-30.2683 1/1:13:0,13:0:0:13:529:-47.9569,-3.91339,0 0/1:12:6,6:6:245:6:246:-18.9078,0,-18.8171 dDocent_Contig_1708 51 . T G 6076.19 . AB=0.416667;ABP=34.1347;AC=3;AF=0.5;AN=6;AO=215;CIGAR=2X;DP=516;DPB=516;DPRA=0;EPP=469.877;EPPR=639.252;GTI=0;LEN=1;MEANALT=2;MQM=60;MQMR=58.959;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=0.959044;PAO=0;PQA=0;PQR=0;PRO=0;QA=8515;QR=11661;RO=293;RPL=215;RPP=469.877;RPPR=639.252;RPR=0;RUN=1;SAF=215;SAP=469.877;SAR=0;SRF=293;SRP=639.252;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|1:341:188,149:188:7510:149:5884:-427.514,0,-572.502 0|1:32:22,10:22:884:10:396:-26.3668,0,-68.1495 0|1:143:83,56:83:3267:56:2235:-159.261,0,-250.403 dDocent_Contig_1709 20 . T G 765.302 . AB=0.130653;ABP=238.806;AC=2;AF=0.333333;AN=6;AO=26;CIGAR=9M1X2M1X4M;DP=199;DPB=187.529;DPRA=0;EPP=59.4686;EPPR=265.758;GTI=0;LEN=1;MEANALT=4.66667;MQM=60;MQMR=60;NS=3;NUMALT=4;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=1003;QR=4699;RO=121;RPL=0;RPP=59.4686;RPPR=265.758;RPR=26;RUN=1;SAF=26;SAP=59.4686;SAR=0;SRF=121;SRP=265.758;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|0:100:70,3,3,7,14:70:2729:3,3,7,14:118,105,276,556:-24.7054,-36.0694,-259.484,-37.2384,-251.846,-260.649,-23.0645,-237.678,-238.843,-245.277,0,-214.622,-215.788,-201.62,-220.115 0|1:32:24,4,2,0,2:24:928:4,2,0,2:154,47,0,80:-5.45299,0,-75.0771,-9.09041,-72.6662,-84.7077,-12.6777,-76.2812,-85.3098,-88.9263,-6.07134,-69.6893,-78.7187,-82.3346,-81.7326 0|1:67:27,19,8,0,11:27:1042:19,8,0,11:731,287,0,425:-51.8946,0,-79.8667,-36.6173,-62.1809,-119.786,-60.0224,-85.5862,-122.195,-145.601,-25.116,-50.6816,-87.292,-110.698,-107.386 dDocent_Contig_1710 24 . A C 3495.11 . AB=0.664671;ABP=42.3439;AC=3;AF=0.5;AN=6;AO=111;CIGAR=1X;DP=167;DPB=167;DPRA=0;EPP=244.044;EPPR=124.613;GTI=0;LEN=1;MEANALT=1;MQM=59.5946;MQMR=59.2857;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=4496;QR=2193;RO=56;RPL=0;RPP=244.044;RPPR=124.613;RPR=111;RUN=1;SAF=111;SAP=244.044;SAR=0;SRF=56;SRP=124.613;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:103:31,72:31:1252:72:2921:-231.938,0,-81.8508 0/1:23:9,14:9:317:14:569:-44.6207,0,-21.9275 0/1:41:16,25:16:624:25:1006:-78.4753,0,-44.1166 dDocent_Contig_1712 7 . T G 37501.8 . AB=0;ABP=0;AC=6;AF=1;AN=6;AO=1285;CIGAR=1X;DP=1330;DPB=1330;DPRA=0;EPP=2793.35;EPPR=96.3836;GTI=0;LEN=1;MEANALT=1.66667;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=0.999222;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=42300;QR=620;RO=43;RPL=0;RPP=2793.35;RPPR=96.3836;RPR=1285;RUN=1;SAF=1285;SAP=2793.35;SAR=0;SRF=43;SRP=96.3836;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 1/1:717:22,693:22:321:693:22442:-1990.02,-186.318,0 1/1:233:6,227:6:82:227:8037:-715.72,-62.6234,0 1/1:380:15,365:15:217:365:11821:-1043.97,-94.7173,0 dDocent_Contig_1713 18 . G A 2009.74 . AB=0.423529;ABP=11.6451;AC=3;AF=0.5;AN=6;AO=72;CIGAR=1X;DP=170;DPB=170;DPRA=0;EPP=159.356;EPPR=215.815;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=2853;QR=3908;RO=98;RPL=0;RPP=159.356;RPPR=215.815;RPR=72;RUN=1;SAF=72;SAP=159.356;SAR=0;SRF=98;SRP=215.815;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:97:52,45:52:2061:45:1783:-131.484,0,-156.486 0/1:31:19,12:19:770:12:480:-34.2185,0,-60.2882 0/1:42:27,15:27:1077:15:590:-40.7942,0,-84.5728 dDocent_Contig_1714 34 . T A 107.414 . AB=0.10101;ABP=276.791;AC=1;AF=0.166667;AN=6;AO=22;CIGAR=1X;DP=313;DPB=313;DPRA=4.10294;EPP=50.7827;EPPR=634.909;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=1.38778e-17;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=869;QR=11431;RO=291;RPL=0;RPP=50.7827;RPPR=634.909;RPR=22;RUN=1;SAF=22;SAP=50.7827;SAR=0;SRF=291;SRP=634.909;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:198:178,20:178:7029:20:795:-12.2643,0,-572.697 0/0:34:34,0:34:1340:0:0:0,-10.235,-120.869 0/0:81:79,2:79:3062:2:74:0,-17.3594,-268.656 dDocent_Contig_1716 10 . C G 502.175 . AB=0.327869;ABP=18.709;AC=2;AF=0.333333;AN=6;AO=20;CIGAR=3X;DP=83;DPB=83;DPRA=1.38636;EPP=46.4397;EPPR=133.299;GTI=0;LEN=1;MEANALT=1.5;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=791;QR=2399;RO=60;RPL=0;RPP=46.4397;RPPR=133.299;RPR=20;RUN=1;SAF=20;SAP=46.4397;SAR=0;SRF=60;SRP=133.299;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|1:48:31,15:31:1241:15:595:-39.64,0,-97.7135 0|0:22:21,0:21:832:0:0:0,-6.32163,-74.7959 0|1:13:8,5:8:326:5:196:-14.1004,0,-25.7965 dDocent_Contig_1717 15 . A T 154.874 . AB=0.117647;ABP=240.467;AC=3;AF=0.5;AN=6;AO=22;CIGAR=1X;DP=187;DPB=187;DPRA=0;EPP=50.7827;EPPR=361.303;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=847;QR=6540;RO=165;RPL=0;RPP=50.7827;RPPR=361.303;RPR=22;RUN=1;SAF=22;SAP=50.7827;SAR=0;SRF=165;SRP=361.303;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:80:71,9:71:2826:9:358:-8.49921,0,-230.36 0/1:45:40,5:40:1582:5:198:-4.65065,0,-129.071 0/1:62:54,8:54:2132:8:291:-7.86012,0,-173.396 dDocent_Contig_1718 52 . G A 146.228 . AB=0.142857;ABP=88.3181;AC=1;AF=0.166667;AN=6;AO=11;CIGAR=1X;DP=148;DPB=148;DPRA=2.16901;EPP=26.8965;EPPR=300.502;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=59.7007;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=0.992701;PAO=0;PQA=0;PQR=0;PRO=0;QA=433;QR=5355;RO=137;RPL=11;RPP=26.8965;RPPR=300.502;RPR=0;RUN=1;SAF=11;SAP=26.8965;SAR=0;SRF=137;SRP=300.502;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:77:66,11:66:2556:11:433:-16.1457,0,-205.549 0/0:29:29,0:29:1115:0:0:0,-8.72987,-100.629 0/0:42:42,0:42:1684:0:0:0,-12.6433,-151.785 dDocent_Contig_1719 9 . A G 94.3064 . AB=0.217391;ABP=18.9659;AC=1;AF=0.166667;AN=6;AO=7;CIGAR=1X2M1X;DP=76;DPB=76;DPRA=1.30952;EPP=18.2106;EPPR=152.842;GTI=0;LEN=1;MEANALT=1;MQM=46;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=0;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=276;QR=2717;RO=69;RPL=0;RPP=18.2106;RPPR=152.842;RPR=7;RUN=1;SAF=7;SAP=18.2106;SAR=0;SRF=69;SRP=152.842;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|1:23:18,5:18:711:5:199:-10.9535,0,-57.3978 0|0:21:21,0:21:821:0:0:0,-6.32163,-74.2113 0|0:32:30,2:30:1185:2:77:0,-2.45932,-99.7618 dDocent_Contig_1720 20 . G A 5068.13 . AB=0.574324;ABP=17.2129;AC=3;AF=0.5;AN=6;AO=170;CIGAR=1X;DP=296;DPB=296;DPRA=0;EPP=372.161;EPPR=276.616;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=6677;QR=4962;RO=126;RPL=0;RPP=372.161;RPPR=276.616;RPR=170;RUN=1;SAF=170;SAP=372.161;SAR=0;SRF=126;SRP=276.616;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:143:69,74:69:2746:74:2910:-218.953,0,-204.206 0/1:51:18,33:18:717:33:1270:-99.2156,0,-49.5031 0/1:102:39,63:39:1499:63:2497:-194.167,0,-104.445 dDocent_Contig_1721 1 . N G 194.276 . AB=0;ABP=0;AC=4;AF=1;AN=4;AO=5;CIGAR=1X;DP=5;DPB=5;DPRA=0;EPP=13.8677;EPPR=0;GTI=0;LEN=1;MEANALT=1;MQM=57.6;MQMR=0;NS=2;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=204;QR=0;RO=0;RPL=0;RPP=13.8677;RPPR=0;RPR=5;RUN=1;SAF=5;SAP=13.8677;SAR=0;SRF=0;SRP=0;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 1/1:3:0,3:0:0:3:123:-11.4401,-0.90309,0 1/1:2:0,2:0:0:2:81:-7.68573,-0.60206,0 ./.:.:.:.:.:.:.:. dDocent_Contig_1723 29 . G A 583.941 . AB=0.208333;ABP=109.412;AC=3;AF=0.5;AN=6;AO=30;CIGAR=1X;DP=144;DPB=144;DPRA=0;EPP=68.1545;EPPR=250.558;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=1180;QR=4403;RO=114;RPL=0;RPP=68.1545;RPPR=250.558;RPR=30;RUN=1;SAF=30;SAP=68.1545;SAR=0;SRF=114;SRP=250.558;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:69:59,10:59:2296:10:399:-15.4981,0,-186.038 0/1:25:17,8:17:640:8:307:-20.4627,0,-50.4012 0/1:50:38,12:38:1467:12:474:-27.9562,0,-117.219 dDocent_Contig_1726 11 . C G 651.329 . AB=0.27551;ABP=45.908;AC=2;AF=0.333333;AN=6;AO=28;CIGAR=1X;DP=119;DPB=119;DPRA=0;EPP=63.8115;EPPR=200.614;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=1122;QR=3670;RO=91;RPL=0;RPP=63.8115;RPPR=200.614;RPR=28;RUN=1;SAF=28;SAP=63.8115;SAR=0;SRF=91;SRP=200.614;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:55:32,23:32:1293:23:918:-66.3683,0,-100.074 0/0:21:20,1:20:806:1:40:0,-2.32595,-68.8606 0/1:43:39,4:39:1571:4:164:-2.20561,0,-128.682 dDocent_Contig_1727 10 . C A 3404.67 . AB=0.377644;ABP=46.0527;AC=3;AF=0.5;AN=6;AO=125;CIGAR=1X;DP=331;DPB=331;DPRA=0;EPP=274.444;EPPR=450.334;GTI=0;LEN=1;MEANALT=1;MQM=59.608;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=0.992;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=4965;QR=8227;RO=206;RPL=0;RPP=274.444;RPPR=450.334;RPR=125;RUN=1;SAF=125;SAP=274.444;SAR=0;SRF=206;SRP=450.334;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:199:132,67:132:5292:67:2668:-180.339,0,-416.215 0/1:34:19,15:19:746:15:595:-41.7456,0,-57.2231 0/1:98:55,43:55:2189:43:1702:-123.905,0,-167.683 dDocent_Contig_1728 65 . C T 1009.02 . AB=0.520548;ABP=3.27802;AC=3;AF=0.5;AN=6;AO=38;CIGAR=1X;DP=73;DPB=73;DPRA=0;EPP=85.5263;EPPR=76.8404;GTI=0;LEN=1;MEANALT=1.33333;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=1410;QR=1263;RO=34;RPL=38;RPP=85.5263;RPPR=76.8404;RPR=0;RUN=1;SAF=38;SAP=85.5263;SAR=0;SRF=34;SRP=76.8404;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:46:22,24:22:817:24:896:-67.1052,0,-59.9778 0/1:7:1,6:1:39:6:223:-18.3212,0,-1.78935 0/1:20:11,8:11:407:8:291:-20.7071,0,-31.1494 dDocent_Contig_1729 22 . C A 56.9256 . AB=0.0923077;ABP=284.533;AC=1;AF=0.166667;AN=6;AO=22;CIGAR=1X;DP=379;DPB=379;DPRA=1.30476;EPP=50.7827;EPPR=776.054;GTI=0;LEN=1;MEANALT=1.5;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=893;QR=14130;RO=356;RPL=0;RPP=50.7827;RPPR=776.054;RPR=22;RUN=1;SAF=22;SAP=50.7827;SAR=0;SRF=356;SRP=776.054;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:195:176,18:176:7008:18:730:-7.21544,0,-571.604 0/0:79:75,4:75:2934:4:163:0,-8.72294,-249.119 0/0:105:105,0:105:4188:0:0:0,-31.6081,-376.895 dDocent_Contig_1730 10 . C T 289.791 . AB=0.354839;ABP=8.68415;AC=1;AF=0.166667;AN=6;AO=12;CIGAR=1X;DP=92;DPB=92;DPRA=1.08621;EPP=29.068;EPPR=176.728;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=482;QR=3215;RO=80;RPL=0;RPP=29.068;RPPR=176.728;RPR=12;RUN=1;SAF=12;SAP=29.068;SAR=0;SRF=80;SRP=176.728;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:32:31,1:31:1257:1:40:0,-5.63728,-109.4 0/0:29:29,0:29:1156:0:0:0,-8.72987,-104.321 0/1:31:20,11:20:802:11:442:-30.803,0,-63.1655 dDocent_Contig_1731 46 . A C 2782.88 . AB=0.578616;ABP=11.546;AC=3;AF=0.5;AN=6;AO=92;CIGAR=1X;DP=159;DPB=159;DPRA=0;EPP=202.786;EPPR=148.499;GTI=0;LEN=1;MEANALT=1;MQM=51.2391;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=0;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=3714;QR=2637;RO=67;RPL=0;RPP=202.786;RPPR=148.499;RPR=92;RUN=1;SAF=92;SAP=202.786;SAR=0;SRF=67;SRP=148.499;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:86:28,58:28:1081:58:2339:-182.649,0,-71.6794 0/1:31:17,14:17:673:14:566:-41.4387,0,-51.5661 0/1:42:22,20:22:883:20:809:-59.7235,0,-67.1359 dDocent_Contig_1733 11 . A G 259.783 . AB=0.130952;ABP=201.752;AC=3;AF=0.5;AN=6;AO=22;CIGAR=1X2M1X;DP=168;DPB=168;DPRA=0;EPP=50.7827;EPPR=320.045;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=883;QR=5835;RO=146;RPL=0;RPP=50.7827;RPPR=320.045;RPR=22;RUN=1;SAF=22;SAP=50.7827;SAR=0;SRF=146;SRP=320.045;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|1:101:85,16:85:3392:16:639:-27.4425,0,-274.936 0|1:10:9,1:9:366:1:41:-1.08427,0,-30.2949 0|1:57:52,5:52:2077:5:203:-1.49435,0,-169.959 dDocent_Contig_1734 10 . T C 8926.15 . AB=0.822917;ABP=89.9597;AC=5;AF=0.833333;AN=6;AO=270;CIGAR=1X;DP=301;DPB=301;DPRA=0;EPP=589.308;EPPR=70.3259;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=10828;QR=1256;RO=31;RPL=0;RPP=589.308;RPPR=70.3259;RPR=270;RUN=1;SAF=270;SAP=589.308;SAR=0;SRF=31;SRP=70.3259;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 1/1:178:12,166:12:483:166:6644:-553.828,-9.76212,0 1/1:27:2,25:2:81:25:982:-80.979,-0.442076,0 0/1:96:17,79:17:692:79:3202:-259.331,0,-33.7095 dDocent_Contig_1735 7 . T C 143.684 . AB=0.242424;ABP=22.0271;AC=2;AF=0.333333;AN=6;AO=8;CIGAR=1X;DP=41;DPB=41;DPRA=2.0625;EPP=20.3821;EPPR=74.6689;GTI=0;LEN=1;MEANALT=1;MQM=56.625;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=308;QR=1259;RO=33;RPL=0;RPP=20.3821;RPPR=74.6689;RPR=8;RUN=1;SAF=8;SAP=20.3821;SAR=0;SRF=33;SRP=74.6689;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:22:18,4:18:693:4:154:-6.96899,0,-56.0817 0/1:11:7,4:7:261:4:154:-10.9223,0,-20.5335 0/0:8:8,0:8:305:0:0:0,-2.40824,-27.81 dDocent_Contig_1736 15 . T C 334.588 . AB=0.130045;ABP=268.115;AC=3;AF=0.5;AN=6;AO=29;CIGAR=1X;DP=223;DPB=223;DPRA=0;EPP=65.983;EPPR=424.276;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=1167;QR=7798;RO=194;RPL=0;RPP=65.983;RPPR=424.276;RPR=29;RUN=1;SAF=29;SAP=65.983;SAR=0;SRF=194;SRP=424.276;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:125:112,13:112:4507:13:519:-9.42515,0,-367.912 0/1:33:26,7:26:1040:7:281:-15.7282,0,-83.9554 0/1:65:56,9:56:2251:9:367:-13.8283,0,-183.185 dDocent_Contig_1737 56 . G A 3443.82 . AB=0.664706;ABP=43.0676;AC=3;AF=0.5;AN=6;AO=113;CIGAR=2X;DP=170;DPB=170;DPRA=0;EPP=248.387;EPPR=124.613;GTI=0;LEN=1;MEANALT=1.33333;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=1.38778e-17;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=4449;QR=2202;RO=56;RPL=113;RPP=248.387;RPPR=124.613;RPR=0;RUN=1;SAF=113;SAP=248.387;SAR=0;SRF=56;SRP=124.613;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|1:102:42,60:42:1649:60:2374:-183.117,0,-117.945 0|1:24:6,17:6:240:17:636:-50.2662,0,-14.6777 0|1:44:8,36:8:313:36:1439:-116.521,0,-15.2887 dDocent_Contig_1738 10 . C T 919.252 . AB=0.307087;ABP=44.0631;AC=3;AF=0.5;AN=6;AO=39;CIGAR=1M1D1M1X;DP=127;DPB=117.25;DPRA=0;EPP=87.6977;EPPR=194.1;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=1496;QR=3349;RO=88;RPL=0;RPP=87.6977;RPPR=194.1;RPR=39;RUN=1;SAF=39;SAP=87.6977;SAR=0;SRF=88;SRP=194.1;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|1:70:48,22:48:1843:22:848:-55.5714,0,-145.048 0|1:23:13,10:13:496:10:383:-27.9005,0,-38.0633 0|1:34:27,7:27:1010:7:265:-13.9762,0,-80.9705 dDocent_Contig_1739 36 . G A 119.554 . AB=0.0714286;ABP=47.6806;AC=0;AF=0;AN=6;AO=2;CIGAR=3X2M1X1M1X;DP=46;DPB=46;DPRA=3.11111;EPP=7.35324;EPPR=76.8404;GTI=0;LEN=1;MEANALT=4;MQM=6;MQMR=60;NS=3;NUMALT=3;ODDS=0;PAIRED=0;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=77;QR=1307;RO=34;RPL=0;RPP=7.35324;RPPR=76.8404;RPR=2;RUN=1;SAF=0;SAP=7.35324;SAR=2;SRF=34;SRP=76.8404;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|0:28:16,2,3,6:16:610:2,3,6:77,117,223:-13.4783,-17.8706,-67.3084,-8.65701,-58.2923,-57.8413,0,-49.6627,-40.4883,-48.3047 0|0:8:8,0,0,0:8:306:0,0,0:0,0,0:0,-2.40824,-27.9011,-2.40824,-27.9011,-27.9011,-2.40824,-27.9011,-27.9011,-27.9011 0|0:10:10,0,0,0:10:391:0,0,0:0,0,0:0,-3.0103,-35.548,-3.0103,-35.548,-35.548,-3.0103,-35.548,-35.548,-35.548 dDocent_Contig_1740 30 . G C 64.7511 . AB=0.142857;ABP=41.7866;AC=1;AF=0.166667;AN=6;AO=10;CIGAR=1X;DP=162;DPB=162;DPRA=0;EPP=24.725;EPPR=333.074;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=409;QR=6025;RO=152;RPL=0;RPP=24.725;RPPR=333.074;RPR=10;RUN=1;SAF=10;SAP=24.725;SAR=0;SRF=152;SRP=333.074;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:109:105,4:105:4170:4:164:0,-17.6624,-360.108 0/0:18:17,1:17:675:1:40:0,-1.42286,-57.0843 0/1:35:30,5:30:1180:5:205:-8.29896,0,-95.9365 dDocent_Contig_1741 15 . G C 103.254 . AB=0.238095;ABP=15.5221;AC=1;AF=0.166667;AN=6;AO=5;CIGAR=1M3I3M1X;DP=87;DPB=90;DPRA=0.636364;EPP=13.8677;EPPR=181.071;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=201;QR=3256;RO=82;RPL=0;RPP=13.8677;RPPR=181.071;RPR=5;RUN=1;SAF=5;SAP=13.8677;SAR=0;SRF=82;SRP=181.071;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|0:56:56,0:56:2226:0:0:0,-16.8577,-200.525 0|0:10:10,0:10:393:0:0:0,-3.0103,-35.7278 0|1:21:16,5:16:637:5:201:-12.1493,0,-51.343 dDocent_Contig_1742 11 . G T 2199.77 . AB=0.434286;ABP=9.57435;AC=3;AF=0.5;AN=6;AO=76;CIGAR=1M1X3M;DP=175;DPB=173.2;DPRA=0;EPP=168.042;EPPR=198.443;GTI=0;LEN=1;MEANALT=1.66667;MQM=60;MQMR=60;NS=3;NUMALT=2;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=3060;QR=3517;RO=90;RPL=0;RPP=168.042;RPPR=198.443;RPR=76;RUN=1;SAF=76;SAP=168.042;SAR=0;SRF=90;SRP=198.443;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|1:103:52,3,48:52:2039:3,48:120,1943:-144.559,-150.328,-317.094,0,-157.783,-153.219 0|1:18:4,0,14:4:154:0,14:0,551:-44.5115,-45.7156,-58.3578,0,-13.0288,-8.81434 0|1:54:34,6,14:34:1324:6,14:243,566:-36.4292,-26.6265,-133.625,0,-88.7619,-104.587 dDocent_Contig_1745 11 . A T 1256 . AB=0.202614;ABP=238.069;AC=3;AF=0.5;AN=6;AO=62;CIGAR=1X;DP=306;DPB=306;DPRA=0;EPP=137.642;EPPR=532.85;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=1.38778e-17;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=2470;QR=9783;RO=244;RPL=0;RPP=137.642;RPPR=532.85;RPR=62;RUN=1;SAF=62;SAP=137.642;SAR=0;SRF=244;SRP=532.85;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:202:167,35:167:6699:35:1396:-65.0834,0,-541.797 0/1:18:5,13:5:200:13:520:-41.7265,0,-12.961 0/1:86:72,14:72:2884:14:554:-24.3134,0,-233.769 dDocent_Contig_1747 27 . G C 2272.13 . AB=0.253197;ABP=209.878;AC=3;AF=0.5;AN=6;AO=99;CIGAR=1X;DP=391;DPB=391;DPRA=0;EPP=217.986;EPPR=637.08;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=3885;QR=11618;RO=292;RPL=0;RPP=217.986;RPPR=637.08;RPR=99;RUN=1;SAF=99;SAP=217.986;SAR=0;SRF=292;SRP=637.08;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:257:208,49:208:8301:49:1949:-98.243,0,-669.263 0/1:38:33,5:33:1314:5:199:-6.84884,0,-107.087 0/1:96:51,45:51:2003:45:1737:-127.644,0,-151.552 dDocent_Contig_1748 127 . C T 55.6644 . AB=0.333333;ABP=5.9056;AC=1;AF=0.166667;AN=6;AO=9;CIGAR=1X;DP=187;DPB=187;DPRA=1.37;EPP=22.5536;EPPR=389.532;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=294;QR=6124;RO=178;RPL=0;RPP=22.5536;RPPR=389.532;RPR=9;RUN=1;SAF=0;SAP=22.5536;SAR=9;SRF=0;SRP=389.532;SRR=178;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:125:120,5:120:4121:5:175:0,-21.5354,-354.988 0/1:12:8,4:8:265:4:119:-7.39035,0,-20.561 0/0:50:50,0:50:1738:0:0:0,-15.0515,-156.704 dDocent_Contig_1749 92 . A C 114.247 . AB=0.315789;ABP=8.61041;AC=1;AF=0.166667;AN=6;AO=6;CIGAR=1X;DP=63;DPB=63;DPRA=0.863636;EPP=16.0391;EPPR=126.784;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=207;QR=1960;RO=57;RPL=6;RPP=16.0391;RPPR=126.784;RPR=0;RUN=1;SAF=6;SAP=16.0391;SAR=0;SRF=57;SRP=126.784;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:34:34,0:34:1162:0:0:0,-10.235,-104.884 0/1:19:13,6:13:449:6:207:-13.2486,0,-35.0212 0/0:10:10,0:10:349:0:0:0,-3.0103,-31.7468 dDocent_Contig_1750 80 . T G 30.15 . AB=0.1875;ABP=16.582;AC=1;AF=0.166667;AN=6;AO=4;CIGAR=2X;DP=38;DPB=38;DPRA=1.61111;EPP=11.6962;EPPR=76.8404;GTI=0;LEN=1;MEANALT=1;MQM=49.5;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=133;QR=944;RO=34;RPL=4;RPP=11.6962;RPPR=76.8404;RPR=0;RUN=1;SAF=4;SAP=11.6962;SAR=0;SRF=34;SRP=76.8404;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|1:16:13,3:13:370:3:102:-4.53727,0,-28.7633 0|0:13:12,1:12:341:1:31:0,-0.877235,-27.9342 0|0:9:9,0:9:233:0:0:0,-2.70927,-21.2271 dDocent_Contig_1751 54 . C A 64.6954 . 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AB=0.256198;ABP=65.4805;AC=3;AF=0.5;AN=6;AO=31;CIGAR=1X;DP=121;DPB=121;DPRA=0;EPP=70.3259;EPPR=198.443;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=6.93889e-18;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=1222;QR=3534;RO=90;RPL=0;RPP=70.3259;RPPR=198.443;RPR=31;RUN=1;SAF=31;SAP=70.3259;SAR=0;SRF=90;SRP=198.443;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:65:49,16:49:1920:16:634:-37.8291,0,-153.442 0/1:27:19,8:19:733:8:316:-20.6775,0,-58.1573 0/1:29:22,7:22:881:7:272:-16.1143,0,-70.8699 dDocent_Contig_1757 50 . G T 433.947 . 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AB=0;ABP=0;AC=4;AF=1;AN=4;AO=7;CIGAR=2X2I8X;DP=7;DPB=8.4;DPRA=0;EPP=18.2106;EPPR=0;GTI=0;LEN=1;MEANALT=1;MQM=35;MQMR=0;NS=2;NUMALT=1;ODDS=0;PAIRED=0.571429;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=265;QR=0;RO=0;RPL=0;RPP=18.2106;RPPR=0;RPR=7;RUN=1;SAF=7;SAP=18.2106;SAR=0;SRF=0;SRP=0;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 1|1:4:0,4:0:0:4:152:-8.94302,-1.20412,0 1|1:3:0,3:0:0:3:113:-8.09893,-0.90309,0 .:.:.:.:.:.:.:. dDocent_Contig_1761 26 . T G 2887.99 . 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AB=0.678571;ABP=18.5208;AC=3;AF=0.5;AN=6;AO=38;CIGAR=1X;DP=56;DPB=56;DPRA=0;EPP=85.5263;EPPR=42.0968;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=1227;QR=598;RO=18;RPL=0;RPP=85.5263;RPPR=42.0968;RPR=38;RUN=1;SAF=0;SAP=85.5263;SAR=38;SRF=0;SRP=42.0968;SRR=18;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:19:5,14:5:173:14:446:-34.728,0,-10.1906 0/1:20:7,13:7:215:13:420:-32.0929,0,-13.6311 0/1:17:6,11:6:210:11:361:-27.6911,0,-14.125 dDocent_Contig_1765 145 . A G 785.865 . 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C G 75.7082 . AB=0.139535;ABP=51.5402;AC=1;AF=0.166667;AN=6;AO=9;CIGAR=1X;DP=164;DPB=164;DPRA=0.525;EPP=22.5536;EPPR=339.589;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=367;QR=6202;RO=155;RPL=9;RPP=22.5536;RPPR=339.589;RPR=0;RUN=1;SAF=9;SAP=22.5536;SAR=0;SRF=155;SRP=339.589;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:80:80,0:80:3206:0:0:0,-24.0824,-288.607 0/1:43:37,6:37:1477:6:244:-9.39453,0,-120.232 0/0:41:38,3:38:1519:3:123:0,-0.877441,-125.484 dDocent_Contig_1769 1 . N A 384.726 . AB=0;ABP=0;AC=6;AF=1;AN=6;AO=12;CIGAR=1X;DP=12;DPB=12;DPRA=0;EPP=29.068;EPPR=0;GTI=0;LEN=1;MEANALT=1;MQM=44.25;MQMR=0;NS=3;NUMALT=1;ODDS=0;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=426;QR=0;RO=0;RPL=0;RPP=29.068;RPPR=0;RPR=12;RUN=1;SAF=0;SAP=29.068;SAR=12;SRF=0;SRP=0;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 1/1:3:0,3:0:0:3:107:-9.52159,-0.90309,0 1/1:2:0,2:0:0:2:72:-6.67078,-0.60206,0 1/1:7:0,7:0:0:7:247:-21.8025,-2.10721,0 dDocent_Contig_1771 13 . A G 6622.35 . AB=0.591281;ABP=29.5709;AC=3;AF=0.5;AN=6;AO=217;CIGAR=1X;DP=367;DPB=367;DPRA=0;EPP=474.22;EPPR=328.731;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=0.635945;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=8644;QR=6012;RO=150;RPL=0;RPP=474.22;RPPR=328.731;RPR=217;RUN=1;SAF=217;SAP=474.22;SAR=0;SRF=150;SRP=328.731;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:235:81,154:81:3258:154:6152:-482.69,0,-222.533 0/1:44:21,23:21:848:23:884:-66.6131,0,-63.3861 0/1:88:48,40:48:1906:40:1608:-118.455,0,-145.253 dDocent_Contig_1772 7 . T C 841.852 . AB=0.191837;ABP=205.099;AC=3;AF=0.5;AN=6;AO=47;CIGAR=1X;DP=245;DPB=245;DPRA=0;EPP=105.07;EPPR=432.962;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=1805;QR=7588;RO=198;RPL=0;RPP=105.07;RPPR=432.962;RPR=47;RUN=1;SAF=47;SAP=105.07;SAR=0;SRF=198;SRP=432.962;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:114:98,16:98:3768:16:610:-20.9197,0,-304.909 0/1:35:30,5:30:1128:5:187:-6.6568,0,-91.2883 0/1:96:70,26:70:2692:26:1008:-62.1316,0,-213.57 dDocent_Contig_1773 8 . T A 7530.29 . AB=0.822742;ABP=273.529;AC=3;AF=0.5;AN=6;AO=246;CIGAR=1X;DP=299;DPB=299;DPRA=0;EPP=537.193;EPPR=118.098;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=9423;QR=2027;RO=53;RPL=0;RPP=537.193;RPPR=118.098;RPR=246;RUN=1;SAF=246;SAP=537.193;SAR=0;SRF=53;SRP=118.098;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:152:30,122:30:1143:122:4678:-375.31,0,-57.4134 0/1:49:5,44:5:193:44:1694:-137.971,0,-2.99102 0/1:98:18,80:18:691:80:3051:-245.256,0,-33.0226 dDocent_Contig_1775 27 . G A 181.262 . AB=0.307692;ABP=11.3621;AC=2;AF=0.333333;AN=6;AO=8;CIGAR=1X;DP=39;DPB=39;DPRA=1;EPP=20.3821;EPPR=70.3259;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=1.73472e-18;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=319;QR=1232;RO=31;RPL=0;RPP=20.3821;RPPR=70.3259;RPR=8;RUN=1;SAF=8;SAP=20.3821;SAR=0;SRF=31;SRP=70.3259;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:15:10,5:10:396:5:199:-13.7731,0,-31.4811 0/1:11:8,3:8:318:3:120:-7.87598,0,-25.6735 0/0:13:13,0:13:518:0:0:0,-3.91339,-46.9665 dDocent_Contig_1776 37 . C T 5559.47 . AB=0.372007;ABP=80.2755;AC=3;AF=0.5;AN=6;AO=202;CIGAR=1X;DP=543;DPB=543;DPRA=0;EPP=441.648;EPPR=743.482;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=8051;QR=13606;RO=341;RPL=0;RPP=441.648;RPPR=743.482;RPR=202;RUN=1;SAF=202;SAP=441.648;SAR=0;SRF=341;SRP=743.482;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:289:212,77:212:8448:77:3072:-189.559,0,-672.847 0/1:58:20,38:20:804:38:1501:-117.866,0,-55.2183 0/1:196:109,87:109:4354:87:3478:-254.045,0,-332.812 dDocent_Contig_1777 19 . A G 3279.49 . AB=0.312039;ABP=127.905;AC=3;AF=0.5;AN=6;AO=127;CIGAR=1X;DP=407;DPB=407;DPRA=0;EPP=278.787;EPPR=611.023;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=5059;QR=11049;RO=280;RPL=0;RPP=278.787;RPPR=611.023;RPR=127;RUN=1;SAF=127;SAP=278.787;SAR=0;SRF=280;SRP=611.023;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:243:150,93:150:5916:93:3710:-260.77,0,-459.103 0/1:41:29,12:29:1159:12:473:-30.5785,0,-92.252 0/1:123:101,22:101:3974:22:876:-42.1231,0,-320.644 dDocent_Contig_1778 11 . G A 1118.73 . AB=0.371681;ABP=19.1714;AC=3;AF=0.5;AN=6;AO=42;CIGAR=1X;DP=113;DPB=113;DPRA=0;EPP=94.2121;EPPR=157.185;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=1671;QR=2842;RO=71;RPL=0;RPP=94.2121;RPPR=157.185;RPR=42;RUN=1;SAF=42;SAP=94.2121;SAR=0;SRF=71;SRP=157.185;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:52:32,20:32:1276:20:801:-56.7525,0,-99.4552 0/1:18:7,11:7:284:11:445:-34.9877,0,-20.5152 0/1:43:32,11:32:1282:11:425:-25.6556,0,-102.701 dDocent_Contig_1779 7 . T G 81.8553 . AB=0.222222;ABP=21.1059;AC=1;AF=0.166667;AN=6;AO=9;CIGAR=1X;DP=119;DPB=119;DPRA=1.02564;EPP=22.5536;EPPR=241.872;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=307;QR=4191;RO=110;RPL=0;RPP=22.5536;RPPR=241.872;RPR=9;RUN=1;SAF=9;SAP=22.5536;SAR=0;SRF=110;SRP=241.872;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:53:50,3:50:1906:3:109:0,-5.78659,-161.616 0/1:27:21,6:21:789:6:198:-10.0094,0,-63.2043 0/0:39:39,0:39:1496:0:0:0,-11.7402,-134.915 dDocent_Contig_1781 77 . T G 33.9839 . AB=0.12;ABP=65.7224;AC=1;AF=0.166667;AN=6;AO=6;CIGAR=1X;DP=74;DPB=74;DPRA=4.16667;EPP=16.0391;EPPR=150.67;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=218;QR=2494;RO=68;RPL=6;RPP=16.0391;RPPR=150.67;RPR=0;RUN=1;SAF=6;SAP=16.0391;SAR=0;SRF=68;SRP=150.67;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:50:44,6:44:1607:6:218:-4.92109,0,-129.864 0/0:9:9,0:9:334:0:0:0,-2.70927,-30.412 0/0:15:15,0:15:553:0:0:0,-4.51545,-50.11 dDocent_Contig_1782 52 . T G 2268.37 . AB=0.266667;ABP=173.254;AC=3;AF=0.5;AN=6;AO=96;CIGAR=1X1M1X;DP=360;DPB=360;DPRA=0;EPP=211.472;EPPR=532.85;GTI=0;LEN=1;MEANALT=2.66667;MQM=60;MQMR=60;NS=3;NUMALT=2;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=3722;QR=9642;RO=244;RPL=96;RPP=211.472;RPPR=532.85;RPR=0;RUN=1;SAF=96;SAP=211.472;SAR=0;SRF=244;SRP=532.85;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|1:198:137,45,15:137:5440:45,15:1731,597:-100.844,0,-434.288,-92.9265,-398.679,-536.256 0|1:61:43,15,2:43:1694:15,2:592,82:-35.8405,0,-134.925,-42.0128,-132.672,-180.78 0|1:101:64,36,0:64:2508:36,0:1399,0:-95.6755,0,-195.375,-114.941,-206.212,-321.163 dDocent_Contig_1783 28 . G A 875.008 . AB=0.185484;ABP=216.095;AC=3;AF=0.5;AN=6;AO=46;CIGAR=1X;DP=248;DPB=248;DPRA=0;EPP=102.898;EPPR=441.648;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=1852;QR=8031;RO=202;RPL=0;RPP=102.898;RPPR=441.648;RPR=46;RUN=1;SAF=46;SAP=102.898;SAR=0;SRF=202;SRP=441.648;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:143:112,31:112:4427:31:1256:-70.2585,0,-355.332 0/1:40:33,7:33:1295:7:275:-13.0746,0,-104.778 0/1:65:57,8:57:2309:8:321:-9.69066,0,-188.393 dDocent_Contig_1784 8 . A T 47.7935 . AB=0.135135;ABP=45.7942;AC=1;AF=0.166667;AN=6;AO=13;CIGAR=1X;DP=390;DPB=390;DPRA=0;EPP=31.2394;EPPR=821.655;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=500;QR=14460;RO=377;RPL=0;RPP=31.2394;RPPR=821.655;RPR=13;RUN=1;SAF=13;SAP=31.2394;SAR=0;SRF=377;SRP=821.655;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:242:238,4:238:9156:4:155:0,-58.5238,-809.424 0/1:37:32,5:32:1231:5:193:-6.60325,0,-99.9446 0/0:111:107,4:107:4073:4:152:0,-19.3651,-352.61 dDocent_Contig_1785 29 . T C 1006.8 . AB=0.114286;ABP=48.239;AC=3;AF=0.5;AN=6;AO=4;CIGAR=22M1X2M;DP=92;DPB=93.76;DPRA=0;EPP=11.6962;EPPR=96.3836;GTI=0;LEN=1;MEANALT=3;MQM=60;MQMR=60;NS=3;NUMALT=3;ODDS=0;PAIRED=0.25;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=124;QR=1655;RO=43;RPL=0;RPP=11.6962;RPPR=96.3836;RPR=4;RUN=1;SAF=4;SAP=11.6962;SAR=0;SRF=43;SRP=96.3836;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|1:41:18,0,22,0:18:686:0,22,0:0,812,0:-60.9587,-66.3773,-122.651,0,-56.2512,-49.6286,-66.3773,-122.651,-56.2512,-122.651 0|1:16:8,0,8,0:8:307:0,8,0:0,277,0:-20.4449,-22.8531,-48.0711,0,-25.5827,-23.1744,-22.8531,-48.0711,-25.5827,-48.0711 0|1:35:17,4,10,4:17:662:4,10,4:156,366,124:-24.7989,-17.084,-70.3092,0,-41.6085,-51.4242,-19.9848,-61.5769,-44.5017,-73.1975 dDocent_Contig_1786 15 . T C 108.941 . AB=0.25;ABP=20.3821;AC=2;AF=0.333333;AN=6;AO=8;CIGAR=1M1D6M2X7M;DP=42;DPB=41.5294;DPRA=1.6;EPP=20.3821;EPPR=76.8404;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=242;QR=1255;RO=34;RPL=0;RPP=20.3821;RPPR=76.8404;RPR=8;RUN=1;SAF=8;SAP=20.3821;SAR=0;SRF=34;SRP=76.8404;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|0:10:10,0:10:359:0:0:0,-3.0103,-32.6509 0|1:12:11,1:11:408:1:37:-0.0854694,0,-33.4536 0|1:20:13,7:13:488:7:205:-12.7163,0,-38.2417 dDocent_Contig_1787 7 . A G 1655.99 . AB=0.578947;ABP=10.2104;AC=3;AF=0.5;AN=6;AO=77;CIGAR=1X;DP=133;DPB=133;DPRA=0;EPP=170.214;EPPR=118.098;GTI=0;LEN=1;MEANALT=1.66667;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=2330;QR=1984;RO=53;RPL=0;RPP=170.214;RPPR=118.098;RPR=77;RUN=1;SAF=77;SAP=170.214;SAR=0;SRF=53;SRP=118.098;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:81:30,49:30:1125:49:1439:-105.854,0,-77.6437 0/1:17:8,9:8:296:9:339:-25.7471,0,-21.8752 0/1:35:15,19:15:563:19:552:-39.5213,0,-40.572 dDocent_Contig_1789 30 . T C 69.4857 . AB=0.12963;ABP=67.3502;AC=1;AF=0.166667;AN=6;AO=10;CIGAR=1X;DP=176;DPB=176;DPRA=0;EPP=24.725;EPPR=363.475;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=6.93889e-18;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=396;QR=6448;RO=166;RPL=0;RPP=24.725;RPPR=363.475;RPR=10;RUN=1;SAF=10;SAP=24.725;SAR=0;SRF=166;SRP=363.475;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:57:55,2:55:2146:2:82:0,-9.37903,-185.541 0/1:54:47,7:47:1790:7:274:-8.77247,0,-145.079 0/0:65:64,1:64:2512:1:40:0,-15.5713,-222.247 dDocent_Contig_1790 12 . C T 149.81 . AB=0.142857;ABP=88.3181;AC=1;AF=0.166667;AN=6;AO=12;CIGAR=1X;DP=127;DPB=127;DPRA=4.38462;EPP=29.068;EPPR=252.73;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=0.982609;PAO=0;PQA=0;PQR=0;PRO=0;QA=474;QR=4467;RO=115;RPL=0;RPP=29.068;RPPR=252.73;RPR=12;RUN=1;SAF=12;SAP=29.068;SAR=0;SRF=115;SRP=252.73;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:77:66,11:66:2535:11:437:-16.5039,0,-205.121 0/0:37:36,1:36:1416:1:37:0,-7.44028,-123.999 0/0:13:13,0:13:516:0:0:0,-3.91339,-46.7862 dDocent_Contig_1791 7 . G A 101.472 . AB=0.2;ABP=26.4622;AC=1;AF=0.166667;AN=6;AO=6;CIGAR=1X;DP=78;DPB=78;DPRA=1.25;EPP=16.0391;EPPR=159.356;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=226;QR=2343;RO=72;RPL=0;RPP=16.0391;RPPR=159.356;RPR=6;RUN=1;SAF=6;SAP=16.0391;SAR=0;SRF=72;SRP=159.356;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:30:24,6:24:686:6:226:-11.67,0,-52.9653 0/0:35:35,0:35:1227:0:0:0,-10.536,-110.719 0/0:13:13,0:13:430:0:0:0,-3.91339,-39.0119 dDocent_Contig_1792 82 . T C 2136.34 . AB=0.666667;ABP=32.6871;AC=3;AF=0.5;AN=6;AO=82;CIGAR=1X;DP=123;DPB=123;DPRA=0;EPP=181.071;EPPR=92.0407;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=2826;QR=1443;RO=41;RPL=82;RPP=181.071;RPPR=92.0407;RPR=0;RUN=1;SAF=82;SAP=181.071;SAR=0;SRF=41;SRP=92.0407;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:88:33,55:33:1158:55:1890:-143.891,0,-78.0354 0/1:19:2,17:2:72:17:591:-47.798,0,-1.11715 0/1:16:6,10:6:213:10:345:-26.5672,0,-14.6999 dDocent_Contig_1793 16 . A G 63.0388 . AB=0.142857;ABP=49.5419;AC=2;AF=0.333333;AN=6;AO=12;CIGAR=1X;DP=147;DPB=147;DPRA=0;EPP=29.068;EPPR=279.045;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=0.985185;PAO=0;PQA=0;PQR=0;PRO=0;QA=472;QR=5327;RO=135;RPL=0;RPP=29.068;RPPR=296.159;RPR=12;RUN=1;SAF=12;SAP=29.068;SAR=0;SRF=133;SRP=279.045;SRR=2;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:105:99,6:99:3894:6:231:0,-10.455,-329.339 0/1:8:6,2:6:239:2:81:-5.27749,0,-19.4771 0/1:34:30,4:30:1194:4:160:-4.54878,0,-97.5014 dDocent_Contig_1795 27 . A T 1164.89 . AB=0.364407;ABP=21.8543;AC=3;AF=0.5;AN=6;AO=43;CIGAR=1X;DP=118;DPB=118;DPRA=0;EPP=96.3836;EPPR=165.871;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=1739;QR=2992;RO=75;RPL=0;RPP=96.3836;RPPR=165.871;RPR=43;RUN=1;SAF=43;SAP=96.3836;SAR=0;SRF=75;SRP=165.871;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:49:36,13:36:1438:13:527:-33.0263,0,-114.921 0/1:45:25,20:25:1002:20:804:-59.1298,0,-76.9276 0/1:24:14,10:14:552:10:408:-29.8559,0,-42.796 dDocent_Contig_1796 32 . A G 74.6025 . AB=0.166667;ABP=37.7539;AC=2;AF=0.333333;AN=6;AO=6;CIGAR=1X;DP=68;DPB=68;DPRA=0.5625;EPP=16.0391;EPPR=137.642;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=234;QR=2336;RO=62;RPL=0;RPP=16.0391;RPPR=137.642;RPR=6;RUN=1;SAF=6;SAP=16.0391;SAR=0;SRF=62;SRP=137.642;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:32:32,0:32:1208:0:0:0,-9.63296,-109.004 0/1:18:15,3:15:569:3:117:-5.49137,0,-46.1314 0/1:18:15,3:15:559:3:117:-5.49167,0,-45.2243 dDocent_Contig_1797 148 . T A 1662.12 . AB=0.125;ABP=61.6401;AC=0;AF=0;AN=6;AO=6;CIGAR=2M1I2M3X1M1X4M2X6M2X2M;DP=106;DPB=106.44;DPRA=1.92;EPP=8.80089;EPPR=50.7827;GTI=0;LEN=1;MEANALT=6;MQM=22.6667;MQMR=60;NS=3;NUMALT=5;ODDS=0;PAIRED=0;PAIREDR=0.954545;PAO=0;PQA=0;PQR=0;PRO=0;QA=136;QR=858;RO=22;RPL=0;RPP=16.0391;RPPR=50.7827;RPR=6;RUN=1;SAF=1;SAP=8.80089;SAR=5;SRF=0;SRP=50.7827;SRR=22;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|0:48:15,0,0,6,8,15:15:584:0,0,6,8,15:0,0,136,160,575:-42.7448,-47.2603,-95.2894,-47.2603,-95.2894,-95.2894,-38.4574,-86.4841,-86.4841,-84.6779,-37.4496,-85.4713,-85.4713,-76.6753,-83.0631,0,-48.0808,-48.0808,-39.2785,-38.2709,-43.5653 0|0:25:0,0,2,0,0,21:0:0:0,2,0,0,21:0,30,0,0,816:-73.5791,-73.5791,-73.5791,-72.0304,-72.0304,-71.4283,-73.5791,-73.5791,-72.0304,-73.5791,-73.5791,-73.5791,-72.0304,-73.5791,-73.5791,-6.32163,-6.32163,-4.77281,-6.32163,-6.32163,0 0|0:33:7,7,0,0,1,18:7:274:7,0,0,1,18:119,0,0,26,676:-53.4112,-48.8459,-69.2752,-55.5184,-71.3824,-78.0666,-55.5184,-71.3824,-78.0666,-78.0666,-53.753,-69.6196,-76.301,-76.301,-76,0,-16.0158,-22.642,-22.642,-20.8758,-17.2234 dDocent_Contig_1798 15 . G A 10197.6 . AB=0.804511;ABP=110.131;AC=4;AF=0.666667;AN=6;AO=297;CIGAR=2X2M;DP=353;DPB=353;DPRA=0;EPP=647.938;EPPR=37.7539;GTI=0;LEN=1;MEANALT=2.66667;MQM=60;MQMR=60;NS=3;NUMALT=3;ODDS=2.77556e-17;PAIRED=0.996633;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=11638;QR=600;RO=16;RPL=0;RPP=647.938;RPPR=37.7539;RPR=297;RUN=1;SAF=297;SAP=647.938;SAR=0;SRF=16;SRP=37.7539;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 1|1:220:10,5,190,14:10:374:5,190,14:189,7449,539:-636.094,-623.615,-652.732,-26.5749,-41.7064,0,-594.85,-609.983,-12.9347,-621.257 0|1:69:6,12,51,0:6:226:12,51,0:461,1986,0:-180.747,-144.71,-159.615,-19.3336,0,-22.4963,-182.553,-163.227,-37.8489,-201.07 0|1:64:0,8,56,0:0:0:8,56,0:303,2203,0:-206.444,-181.604,-179.196,-25.2201,0,-8.36242,-206.444,-181.604,-25.2201,-206.444 dDocent_Contig_1799 35 . A G 49.8659 . AB=0.116667;ABP=79.5909;AC=1;AF=0.166667;AN=6;AO=7;CIGAR=1X;DP=99;DPB=99;DPRA=3.07692;EPP=18.2106;EPPR=202.786;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=269;QR=3606;RO=92;RPL=0;RPP=18.2106;RPPR=202.786;RPR=7;RUN=1;SAF=7;SAP=18.2106;SAR=0;SRF=92;SRP=202.786;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:60:53,7:53:2082:7:269:-6.50947,0,-169.503 0/0:13:13,0:13:494:0:0:0,-3.91339,-44.7982 0/0:26:26,0:26:1030:0:0:0,-7.82678,-92.992 dDocent_Contig_1801 14 . C G 92.3923 . AB=0.208333;ABP=20.744;AC=1;AF=0.166667;AN=6;AO=8;CIGAR=1X;DP=91;DPB=91;DPRA=6;EPP=20.3821;EPPR=183.243;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=3.46945e-18;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=308;QR=3322;RO=83;RPL=0;RPP=20.3821;RPPR=183.243;RPR=8;RUN=1;SAF=8;SAP=20.3821;SAR=0;SRF=83;SRP=183.243;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:60:57,3:57:2278:3:109:0,-7.89782,-195.02 0/0:7:7,0:7:276:0:0:0,-2.10721,-25.2084 0/1:24:19,5:19:768:5:199:-11.0631,0,-62.216 dDocent_Contig_1803 7 . G A 1248.76 . AB=0.213115;ABP=90.2252;AC=1;AF=0.166667;AN=6;AO=26;CIGAR=1X4M;DP=122;DPB=122;DPRA=0;EPP=59.4686;EPPR=79.0118;GTI=0;LEN=1;MEANALT=3.66667;MQM=60;MQMR=60;NS=3;NUMALT=4;ODDS=2.77556e-17;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=996;QR=1203;RO=35;RPL=0;RPP=59.4686;RPPR=79.0118;RPR=26;RUN=1;SAF=26;SAP=59.4686;SAR=0;SRF=35;SRP=79.0118;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|1:37:13,0,1,6,16:13:451:0,1,6,16:0,38,193,615:-46.6162,-50.5295,-87.1753,-47.4123,-84.0582,-83.7571,-34.9882,-71.6269,-68.5099,-69.8207,0,-36.6667,-33.5481,-21.1177,-31.8502 0|0:48:11,3,10,19,5:11:390:3,10,19,5:105,361,656,192:-49.9625,-44.7318,-75.5953,-23.8121,-47.0373,-52.5691,0,-23.2216,-2.30333,-26.0431,-37.5081,-60.7337,-39.8136,-15.9968,-67.7708 0|0:37:11,0,7,14,5:11:362:0,7,14,5:0,266,460,189:-33.8198,-37.1312,-66.378,-15.3063,-44.5554,-42.4482,0,-29.2297,-7.40439,-25.0153,-21.6333,-50.8812,-29.0555,-13.7317,-49.376 dDocent_Contig_1804 14 . C G 374.683 . AB=0.0697674;ABP=141.278;AC=0;AF=0;AN=6;AO=6;CIGAR=2X3M1D2M1X;DP=96;DPB=95.3333;DPRA=0;EPP=16.0391;EPPR=137.642;GTI=0;LEN=1;MEANALT=3.5;MQM=48;MQMR=60;NS=3;NUMALT=4;ODDS=0;PAIRED=0;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=223;QR=2389;RO=62;RPL=0;RPP=16.0391;RPPR=137.642;RPR=6;RUN=1;SAF=6;SAP=16.0391;SAR=0;SRF=62;SRP=137.642;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|0:48:34,2,0,4,7:34:1311:2,0,4,7:82,0,148,271:-12.0268,-15.4894,-122.546,-22.2618,-123.148,-129.917,-10.3299,-111.21,-117.979,-116.775,0,-100.888,-107.658,-95.7203,-105.551 0|0:10:8,2,0,0,0:8:315:2,0,0,0:76,0,0,0:-4.20396,0,-25.7055,-6.6122,-26.3075,-32.5373,-6.6122,-26.3075,-32.5373,-32.5373,-6.6122,-26.3075,-32.5373,-32.5373,-32.5373 0|0:38:20,0,6,2,10:20:763:0,6,2,10:0,232,75,398:-26.7596,-32.7802,-95.3701,-13.7268,-76.3143,-74.5082,-26.7018,-89.2901,-70.2345,-88.688,0,-62.5941,-43.5371,-56.514,-59.5838 dDocent_Contig_1805 18 . G A 99.2319 . AB=0.363636;ABP=4.78696;AC=1;AF=0.166667;AN=6;AO=4;CIGAR=1X;DP=38;DPB=38;DPRA=0.814815;EPP=11.6962;EPPR=74.6689;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=8.67362e-19;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=163;QR=1302;RO=33;RPL=0;RPP=11.6962;RPPR=74.6689;RPR=4;RUN=1;SAF=4;SAP=11.6962;SAR=0;SRF=33;SRP=74.6689;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:13:12,0:12:476:0:0:0,-3.61236,-43.0675 0/0:14:14,0:14:546:0:0:0,-4.21442,-49.4771 0/1:11:7,4:7:280:4:163:-11.7471,0,-22.2586 dDocent_Contig_1808 112 . A G 75.2005 . AB=0.227273;ABP=17.2236;AC=2;AF=0.333333;AN=6;AO=5;CIGAR=1X2M;DP=35;DPB=35;DPRA=0.846154;EPP=13.8677;EPPR=63.8115;GTI=0;LEN=1;MEANALT=1.5;MQM=60;MQMR=60;NS=3;NUMALT=2;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=175;QR=942;RO=28;RPL=0;RPP=13.8677;RPPR=63.8115;RPR=5;RUN=1;SAF=0;SAP=13.8677;SAR=5;SRF=0;SRP=63.8115;SRR=28;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|1:10:7,2,1:7:232:2,1:70,35:-0.800704,-0.582378,-18.7301,0,-16.4821,-18.5909 0|1:12:8,0,4:8:273:0,4:0,140:-9.33257,-11.7408,-33.8885,0,-22.4946,-21.2905 0|0:13:13,0,0:13:437:0,0:0,0:0,-3.91339,-39.6527,-3.91339,-39.6527,-39.6527 dDocent_Contig_1809 7 . G A 1775.06 . AB=0.235632;ABP=214.267;AC=3;AF=0.5;AN=6;AO=82;CIGAR=1X2M3D1M;DP=348;DPB=312.857;DPRA=0;EPP=181.071;EPPR=530.678;GTI=0;LEN=1;MEANALT=4.66667;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=0.983539;PAO=0;PQA=0;PQR=0;PRO=0;QA=3121;QR=8451;RO=243;RPL=0;RPP=181.071;RPPR=530.678;RPR=82;RUN=1;SAF=82;SAP=181.071;SAR=0;SRF=243;SRP=530.678;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|1:180:122,46:122:4257:46:1758:-107.64,0,-332.458 0|1:74:59,12:59:2085:12:448:-18.9566,0,-166.196 0|1:94:62,24:62:2109:24:915:-56.4322,0,-163.825 dDocent_Contig_1810 7 . G A 1840 . AB=0.12;ABP=34.3664;AC=0;AF=0;AN=6;AO=3;CIGAR=1X1M2X;DP=118;DPB=118;DPRA=0;EPP=9.52472;EPPR=81.1833;GTI=0;LEN=1;MEANALT=2;MQM=60;MQMR=60;NS=3;NUMALT=3;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=113;QR=1309;RO=36;RPL=0;RPP=9.52472;RPPR=81.1833;RPR=3;RUN=1;SAF=3;SAP=9.52472;SAR=0;SRF=36;SRP=81.1833;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|0:25:7,6,0,11:7:261:6,0,11:228,0,363:-27.2016,-10.5949,-30.1698,-29.3088,-31.976,-50.6821,0,-2.66214,-21.3637,-18.0524 0|0:68:25,0,0,42:25:908:0,0,42:0,0,1489:-113.744,-121.27,-195.418,-121.27,-195.418,-195.418,0,-74.1382,-74.1382,-61.495 0|0:25:4,0,3,18:4:140:0,3,18:0,113,614:-48.5757,-49.7799,-61.1701,-40.5153,-51.9065,-51.0034,0,-11.3744,-2.10355,-5.95589 dDocent_Contig_1811 22 . T C 8045.37 . AB=0.757009;ABP=187.18;AC=4;AF=0.666667;AN=6;AO=243;CIGAR=1X2M;DP=321;DPB=321;DPRA=0;EPP=530.678;EPPR=83.3548;GTI=0;LEN=1;MEANALT=2.33333;MQM=60;MQMR=60;NS=3;NUMALT=2;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=9664;QR=1470;RO=37;RPL=0;RPP=530.678;RPPR=83.3548;RPR=243;RUN=1;SAF=243;SAP=530.678;SAR=0;SRF=37;SRP=83.3548;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 1|1:197:25,33,139:25:991:33,139:1302,5517:-472.136,-372.542,-444.177,-25.5492,0,-65.2761 0|1:71:7,5,59:7:279:5,59:199,2357:-192.022,-177.744,-199.213,0,-6.59015,-5.21449 0|1:53:5,2,45:5:200:2,45:80,1790:-145.886,-140.801,-156.675,0,-9.89831,-2.94544 dDocent_Contig_1812 70 . T C 1138.55 . AB=0.221453;ABP=197.774;AC=2;AF=0.333333;AN=6;AO=66;CIGAR=1X;DP=320;DPB=320;DPRA=0;EPP=146.327;EPPR=554.564;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=2336;QR=8874;RO=254;RPL=66;RPP=146.327;RPPR=554.564;RPR=0;RUN=1;SAF=66;SAP=146.327;SAR=0;SRF=254;SRP=554.564;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:206:159,47:159:5582:47:1671:-88.6652,0,-440.502 0/0:31:29,2:29:1017:2:72:0,-2.49521,-85.0015 0/1:83:66,17:66:2275:17:593:-28.7127,0,-180.034 dDocent_Contig_1814 29 . G C 941.122 . AB=0.101064;ABP=2082.08;AC=2;AF=0.333333;AN=6;AO=169;CIGAR=1X;DP=1830;DPB=1830;DPRA=0;EPP=369.989;EPPR=3601.14;GTI=0;LEN=1;MEANALT=1.66667;MQM=60;MQMR=58.7399;NS=3;NUMALT=1;ODDS=1.11022e-16;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=6774;QR=66186;RO=1657;RPL=0;RPP=369.989;RPPR=3601.14;RPR=169;RUN=1;SAF=169;SAP=369.989;SAR=0;SRF=1657;SRP=3601.14;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:988:902,83:902:35983:83:3330:-2.82088,0,-2912 0/0:326:308,17:308:12350:17:666:0,-37.9643,-1025.18 0/1:516:447,69:447:17853:69:2778:-94.7929,0,-1448.1 dDocent_Contig_1815 87 . C G 1308.39 . AB=0.55;ABP=5.18177;AC=3;AF=0.5;AN=6;AO=55;CIGAR=1X;DP=100;DPB=100;DPRA=0;EPP=122.441;EPPR=100.727;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=1839;QR=1552;RO=45;RPL=55;RPP=122.441;RPPR=100.727;RPR=0;RUN=1;SAF=55;SAP=122.441;SAR=0;SRF=45;SRP=100.727;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:50:20,30:20:689:30:989:-74.2595,0,-47.2804 0/1:21:4,17:4:139:17:578:-46.0205,0,-6.53106 0/1:29:21,8:21:724:8:272:-16.0818,0,-56.7515 dDocent_Contig_1816 7 . G T 4138.9 . AB=0.4375;ABP=23.0964;AC=3;AF=0.5;AN=6;AO=259;CIGAR=1X;DP=592;DPB=592;DPRA=0;EPP=4.89671;EPPR=723.939;GTI=0;LEN=1;MEANALT=1.33333;MQM=28.6873;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=0.0501931;PAIREDR=0.918675;PAO=0;PQA=0;PQR=0;PRO=0;QA=9598;QR=10797;RO=332;RPL=0;RPP=565.422;RPPR=723.939;RPR=259;RUN=1;SAF=137;SAP=4.89671;SAR=122;SRF=332;SRP=723.939;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:205:146,59:146:4566:59:2150:-73.1547,0,-349.322 0/1:254:90,164:90:3124:164:6276:-310.772,0,-204.871 0/1:133:96,36:96:3107:36:1172:-35.4854,0,-239.962 dDocent_Contig_1817 7 . G A 15495.1 . AB=0.0558882;ABP=1719.6;AC=3;AF=0.5;AN=6;AO=56;CIGAR=4X;DP=1002;DPB=1002;DPRA=0;EPP=124.613;EPPR=862.913;GTI=0;LEN=1;MEANALT=4.33333;MQM=60;MQMR=60;NS=3;NUMALT=2;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=2120;QR=13353;RO=396;RPL=0;RPP=124.613;RPPR=862.913;RPR=56;RUN=1;SAF=56;SAP=124.613;SAR=0;SRF=396;SRP=862.913;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|1:612:233,331,34:233:7895:331,34:12770,1290:-978.612,0,-540.404,-942.979,-534.266,-1572.77 0|1:113:47,63,2:47:1634:63,2:2401,77:-182.783,0,-113.83,-190.609,-126.471,-322.824 0|1:277:116,135,20:116:3824:135,20:5220,753:-393.637,0,-268.438,-366.857,-247.369,-669.886 dDocent_Contig_1818 31 . T A 357.51 . AB=0.219512;ABP=59.0449;AC=3;AF=0.5;AN=6;AO=18;CIGAR=2X1M1X9M;DP=82;DPB=82.1538;DPRA=0;EPP=42.0968;EPPR=137.642;GTI=0;LEN=1;MEANALT=1.33333;MQM=60;MQMR=60;NS=3;NUMALT=2;ODDS=0;PAIRED=0;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=718;QR=2465;RO=62;RPL=0;RPP=42.0968;RPPR=137.642;RPR=18;RUN=1;SAF=18;SAP=42.0968;SAR=0;SRF=62;SRP=137.642;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|1:25:15,10,0:15:598:10,0:397,0:-28.5631,0,-46.6354,-33.0786,-49.6457,-82.327 0|1:18:12,4,2:12:473:4,2:158,80:-9.38558,0,-37.7066,-6.40612,-32.3198,-44.7192 0|1:39:35,4,0:35:1394:4,0:163,0:-3.31826,0,-113.985,-13.8543,-115.189,-128.638 dDocent_Contig_1819 7 . G A 39.3022 . AB=0.115385;ABP=69.8248;AC=1;AF=0.166667;AN=6;AO=6;CIGAR=1X;DP=271;DPB=271;DPRA=0.474886;EPP=16.0391;EPPR=535.325;GTI=0;LEN=1;MEANALT=2;MQM=60;MQMR=52.5253;NS=3;NUMALT=1;ODDS=6.93889e-18;PAIRED=1;PAIREDR=0.801556;PAO=0;PQA=0;PQR=0;PRO=0;QA=230;QR=8449;RO=257;RPL=0;RPP=16.0391;RPPR=561.079;RPR=6;RUN=1;SAF=6;SAP=16.0391;SAR=0;SRF=254;SRP=535.325;SRR=3;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:157:152,0:152:4911:0:0:0,-45.7566,-389.372 0/0:62:61,0:61:2050:0:0:0,-18.3628,-167.049 0/1:52:44,6:44:1488:6:230:-5.75408,0,-104.838 dDocent_Contig_1820 9 . T A 83.9636 . AB=0.133333;ABP=90.593;AC=1;AF=0.166667;AN=6;AO=38;CIGAR=1X;DP=557;DPB=557;DPRA=0;EPP=85.5263;EPPR=1130;GTI=0;LEN=1;MEANALT=1;MQM=58.4474;MQMR=60;NS=3;NUMALT=1;ODDS=1.38778e-17;PAIRED=0.894737;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=1237;QR=18061;RO=519;RPL=0;RPP=85.5263;RPPR=1130;RPR=38;RUN=1;SAF=38;SAP=85.5263;SAR=0;SRF=519;SRP=1130;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:317:293,24:293:10094:24:767:0,-27.13,-839.95 0/1:75:65,10:65:2373:10:361:-10.2203,0,-191.207 0/0:165:161,4:161:5594:4:109:0,-39.5911,-493.427 dDocent_Contig_1821 8 . T A 76.1947 . AB=0.208333;ABP=20.744;AC=1;AF=0.166667;AN=6;AO=5;CIGAR=1X;DP=46;DPB=46;DPRA=2.18182;EPP=13.8677;EPPR=92.0407;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=178;QR=1415;RO=41;RPL=0;RPP=13.8677;RPPR=92.0407;RPR=5;RUN=1;SAF=5;SAP=13.8677;SAR=0;SRF=41;SRP=92.0407;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:24:19,5:19:632:5:178:-9.14235,0,-49.9588 0/0:11:11,0:11:409:0:0:0,-3.31133,-37.1571 0/0:11:11,0:11:374:0:0:0,-3.31133,-33.9818 dDocent_Contig_1822 122 . T C 53.4129 . AB=0.193548;ABP=28.2974;AC=1;AF=0.166667;AN=6;AO=12;CIGAR=1X2M1X;DP=173;DPB=173;DPRA=1.71795;EPP=29.068;EPPR=350.446;GTI=0;LEN=1;MEANALT=1.5;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=0;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=353;QR=5005;RO=160;RPL=0;RPP=29.068;RPPR=350.446;RPR=12;RUN=1;SAF=0;SAP=29.068;SAR=12;SRF=0;SRP=350.446;SRR=160;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|0:103:96,6:96:3015:6:173:0,-14.9328,-255.776 0|1:31:25,6:25:764:6:180:-7.1652,0,-59.7195 0|0:39:39,0:39:1226:0:0:0,-11.7402,-110.628 dDocent_Contig_1823 7 . T G 20430.3 . AB=0;ABP=0;AC=6;AF=1;AN=6;AO=715;CIGAR=1X;DP=738;DPB=738;DPRA=0;EPP=1555.61;EPPR=50.7827;GTI=0;LEN=1;MEANALT=1.33333;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=0.994406;PAIREDR=0.954545;PAO=0;PQA=0;PQR=0;PRO=0;QA=23014;QR=313;RO=22;RPL=0;RPP=1555.61;RPPR=50.7827;RPR=715;RUN=1;SAF=715;SAP=1555.61;SAR=0;SRF=22;SRP=50.7827;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 1/1:453:11,442:11:135:442:13948:-1242.73,-124.094,0 1/1:116:3,112:3:45:112:3844:-341.908,-30.5385,0 1/1:169:8,161:8:133:161:5222:-457.918,-38.7386,0 dDocent_Contig_1824 7 . G A 7573.04 . AB=0.387139;ABP=87.3159;AC=3;AF=0.5;AN=6;AO=295;CIGAR=1X;DP=762;DPB=762;DPRA=0;EPP=643.595;EPPR=988.859;GTI=0;LEN=1;MEANALT=2.33333;MQM=55.3763;MQMR=57.674;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=0.962555;PAO=0;PQA=0;PQR=0;PRO=0;QA=11265;QR=14863;RO=454;RPL=0;RPP=643.595;RPPR=988.859;RPR=295;RUN=1;SAF=295;SAP=643.595;SAR=0;SRF=454;SRP=988.859;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:398:215,174:215:7029:174:6659:-464.063,0,-513.025 0/1:152:104,46:104:3562:46:1756:-105.706,0,-275.031 0/1:212:135,75:135:4272:75:2850:-193.058,0,-319.636 dDocent_Contig_1825 7 . A G 4184.95 . AB=0.839024;ABP=207.669;AC=3;AF=0.5;AN=6;AO=172;CIGAR=2X;DP=205;DPB=205;DPRA=0;EPP=376.504;EPPR=65.983;GTI=0;LEN=1;MEANALT=2.33333;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=0.965517;PAO=0;PQA=0;PQR=0;PRO=0;QA=5380;QR=1087;RO=29;RPL=0;RPP=376.504;RPPR=65.983;RPR=172;RUN=1;SAF=172;SAP=376.504;SAR=0;SRF=29;SRP=65.983;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|1:97:10,84:10:377:84:2628:-208.207,0,-5.72417 0|1:47:7,40:7:256:40:1280:-101.324,0,-9.24287 0|1:61:12,48:12:454:48:1472:-114.487,0,-22.9495 dDocent_Contig_1826 128 . A G 30.188 . AB=0.127273;ABP=69.3784;AC=1;AF=0.166667;AN=6;AO=7;CIGAR=2X3M1X2M1X;DP=93;DPB=93;DPRA=2.89474;EPP=18.2106;EPPR=183.243;GTI=0;LEN=1;MEANALT=2;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=3.46945e-18;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=228;QR=2834;RO=83;RPL=0;RPP=18.2106;RPPR=183.243;RPR=7;RUN=1;SAF=0;SAP=18.2106;SAR=7;SRF=0;SRP=183.243;SRR=83;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|1:55:46,7:46:1566:7:228:-4.54126,0,-124.928 0|0:13:12,0:12:413:0:0:0,-3.61236,-37.4099 0|0:25:25,0:25:855:0:0:0,-7.52575,-77.2639 dDocent_Contig_1827 98 . N T 97.219 . AB=0;ABP=0;AC=2;AF=1;AN=2;AO=3;CIGAR=2X10I3X;DP=3;DPB=15.6;DPRA=0;EPP=9.52472;EPPR=0;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=0;NS=1;NUMALT=1;ODDS=6.68461;PAIRED=0;PAIREDR=0;PAO=9;PQA=302;PQR=0;PRO=0;QA=108;QR=0;RO=0;RPL=3;RPP=9.52472;RPPR=0;RPR=0;RUN=1;SAF=0;SAP=9.52472;SAR=3;SRF=0;SRP=0;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 1|1:3:0,3:0:0:3:108:-9.72135,-0.90309,0 .:.:.:.:.:.:.:. .:.:.:.:.:.:.:. dDocent_Contig_1828 8 . T C 1686.51 . AB=0.161616;ABP=199.934;AC=3;AF=0.5;AN=6;AO=32;CIGAR=1M2X1M1I5M1X;DP=198;DPB=203.5;DPRA=0;EPP=72.4974;EPPR=168.042;GTI=0;LEN=1;MEANALT=4.66667;MQM=59.7812;MQMR=60;NS=3;NUMALT=3;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=1187;QR=2764;RO=76;RPL=0;RPP=72.4974;RPPR=168.042;RPR=32;RUN=1;SAF=32;SAP=72.4974;SAR=0;SRF=76;SRP=168.042;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|1:122:54,38,0,17:54:1968:38,0,17:1315,0,622:-90.5795,0,-149.329,-106.835,-160.768,-267.592,-56.0026,-109.942,-216.766,-211.648 0|1:29:11,10,0,6:11:408:10,0,6:361,0,225:-26.1257,0,-30.3715,-29.4371,-33.3818,-62.821,-11.0099,-14.9575,-44.3966,-42.5905 0|1:47:11,21,4,9:11:388:21,4,9:746,132,340:-57.4687,0,-25.2631,-50.1148,-20.921,-80.4968,-32.9047,-3.70546,-53.8273,-61.7843 dDocent_Contig_1829 45 . G C 2046.79 . AB=0.741573;ABP=48.1232;AC=3;AF=0.5;AN=6;AO=66;CIGAR=1X;DP=89;DPB=89;DPRA=0;EPP=146.327;EPPR=52.9542;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=2623;QR=918;RO=23;RPL=0;RPP=146.327;RPPR=52.9542;RPR=66;RUN=1;SAF=66;SAP=146.327;SAR=0;SRF=23;SRP=52.9542;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:35:8,27:8:321:27:1082:-87.1314,0,-18.7221 0/1:28:11,17:11:435:17:688:-53.8207,0,-31.071 0/1:26:4,22:4:162:22:853:-69.2495,0,-7.14018 dDocent_Contig_1831 9 . A T 3377.97 . AB=0.0917431;ABP=318.611;AC=3;AF=0.5;AN=6;AO=20;CIGAR=2M1X;DP=218;DPB=218;DPRA=0;EPP=46.4397;EPPR=70.3259;GTI=0;LEN=1;MEANALT=4.66667;MQM=60;MQMR=60;NS=3;NUMALT=4;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=760;QR=1179;RO=31;RPL=0;RPP=46.4397;RPPR=70.3259;RPR=20;RUN=1;SAF=20;SAP=46.4397;SAR=0;SRF=31;SRP=70.3259;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 1|0:92:13,38,8,21,10:13:486:38,8,21,10:1216,312,647,375:-106.097,-12.0605,-40.4243,-84.3565,-26.2082,-121.75,-58.132,0,-72.2792,-91.6108,-79.2886,-21.1411,-93.4366,-67.2118,-116.08 1|0:59:1,35,0,18,4:1:38:35,0,18,4:1179,0,612,152:-141.692,-46.4762,-39.058,-141.994,-49.594,-145.111,-92.3702,0,-95.4877,-90.0691,-129.525,-37.1223,-132.642,-83.0179,-131.438 0|1:67:17,37,5,1,6:17:655:37,5,1,6:1243,185,32,233:-95.5301,0,-42.6555,-85.5126,-38.6631,-137.804,-98.0697,-51.2172,-136.731,-151.564,-81.4957,-34.6452,-120.159,-132.715,-133.487 dDocent_Contig_1832 35 . C A 103.884 . AB=0.227273;ABP=17.2236;AC=1;AF=0.166667;AN=6;AO=8;CIGAR=1X;DP=143;DPB=143;DPRA=4.60714;EPP=20.3821;EPPR=296.159;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=322;QR=5444;RO=135;RPL=0;RPP=20.3821;RPPR=296.159;RPR=8;RUN=1;SAF=8;SAP=20.3821;SAR=0;SRF=135;SRP=296.159;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:107:104,3:104:4202:3:117:0,-21.3003,-367.213 0/0:14:14,0:14:564:0:0:0,-4.21442,-51.1032 0/1:22:17,5:17:678:5:205:-12.2123,0,-54.7286 dDocent_Contig_1833 7 . A G 6651.36 . AB=0.828431;ABP=194.142;AC=4;AF=0.666667;AN=6;AO=252;CIGAR=1X;DP=293;DPB=293;DPRA=0;EPP=550.221;EPPR=81.1833;GTI=0;LEN=1;MEANALT=1.66667;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=0.988095;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=8274;QR=1369;RO=36;RPL=0;RPP=550.221;RPPR=81.1833;RPR=252;RUN=1;SAF=252;SAP=550.221;SAR=0;SRF=36;SRP=81.1833;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:129:24,101:24:923:101:3248:-254.697,0,-45.5624 0/1:75:7,68:7:259:68:2415:-194.994,0,-1.08814 1/1:89:5,83:5:187:83:2611:-218.039,-9.45287,0 dDocent_Contig_1834 9 . C T 1237.35 . AB=0.314721;ABP=61.7503;AC=3;AF=0.5;AN=6;AO=62;CIGAR=1X;DP=197;DPB=197;DPRA=0;EPP=137.642;EPPR=296.159;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=2085;QR=4808;RO=135;RPL=0;RPP=137.642;RPPR=296.159;RPR=62;RUN=1;SAF=62;SAP=137.642;SAR=0;SRF=135;SRP=296.159;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:109:74,35:74:2610:35:1151:-71.0484,0,-202.297 0/1:42:30,12:30:1085:12:410:-24.5764,0,-85.3023 0/1:46:31,15:31:1113:15:524:-33.6334,0,-86.6154 dDocent_Contig_1835 7 . G A 6888.76 . AB=0.691358;ABP=106.061;AC=3;AF=0.5;AN=6;AO=224;CIGAR=1X3M1X3M1D5M1X;DP=324;DPB=306.4;DPRA=0;EPP=489.42;EPPR=122.441;GTI=0;LEN=1;MEANALT=6;MQM=60;MQMR=60;NS=3;NUMALT=3;ODDS=0;PAIRED=0.986607;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=8656;QR=2087;RO=55;RPL=0;RPP=489.42;RPPR=122.441;RPR=224;RUN=1;SAF=224;SAP=489.42;SAR=0;SRF=55;SRP=122.441;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|1:164:28,3,115,9:28:1061:3,115,9:116,4438,346:-356.033,-354.934,-441.019,0,-77.4692,-52.3797,-336.059,-413.519,-58.592,-420.338 0|1:78:13,5,51,7:13:501:5,51,7:196,1987,279:-159.413,-147.208,-186.841,0,-25.0225,-25.7911,-140.349,-165.369,-18.1609,-179.38 0|1:82:14,3,58,1:14:525:3,58,1:118,2231,39:-178.952,-173.459,-215.556,0,-33.2977,-25.5481,-179.961,-213.253,-39.8011,-222.659 dDocent_Contig_1836 11 . G A 2982.29 . AB=0.0723982;ABP=704.976;AC=1;AF=0.166667;AN=6;AO=32;CIGAR=4M1X4M1X3M1X3M1X1M1X7M1X1M;DP=442;DPB=442.586;DPRA=0;EPP=72.4974;EPPR=144.156;GTI=0;LEN=1;MEANALT=20.6667;MQM=60;MQMR=60;NS=3;NUMALT=6;ODDS=2.22045e-16;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=1209;QR=2482;RO=65;RPL=0;RPP=72.4974;RPPR=144.156;RPR=32;RUN=1;SAF=32;SAP=72.4974;SAR=0;SRF=65;SRP=144.156;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|1:140:28,2,11,23,8,22,19:28:1078:2,11,23,8,22,19:79,429,882,309,851,749:-63.968,-65.8954,-153.805,-37.1303,-119.141,-122.331,0,-82.0111,-53.2461,-81.5888,-47.0175,-129.028,-100.263,-63.1333,-133.121,-2.50118,-84.5124,-55.7474,-18.6172,-65.6346,-84.3911,-10.7749,-92.7863,-64.0212,-26.8909,-73.9084,-29.3922,-93.568 0|0:141:19,11,14,14,12,25,23:19:733:11,14,14,12,25,23:430,513,535,464,969,898:-87.5004,-57.8662,-114.751,-51.2968,-76.1396,-107.279,-49.3221,-74.165,-67.5954,-105.304,-55.1068,-79.9498,-73.3801,-71.4056,-111.691,-13.6199,-38.463,-31.8937,-29.9188,-35.7036,-66.2911,-19.4035,-44.2466,-37.6772,-35.7024,-41.4871,0,-72.6768 0|0:161:18,6,4,6,12,38,29:18:671:6,4,6,12,38,29:239,154,216,436,1462,1127:-152.284,-138.019,-191.145,-145.057,-180.305,-198.784,-140.082,-175.331,-182.368,-193.207,-122.1,-157.348,-164.386,-159.411,-173.419,-37.6797,-72.9289,-79.9665,-74.9921,-57.0093,-81.173,-65.0927,-100.342,-107.379,-102.405,-84.4221,0,-111.295 dDocent_Contig_1837 48 . C T 159.03 . AB=0.210526;ABP=30.668;AC=1;AF=0.166667;AN=6;AO=8;CIGAR=1X;DP=119;DPB=119;DPRA=0.938272;EPP=20.3821;EPPR=244.044;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=320;QR=4335;RO=111;RPL=8;RPP=20.3821;RPPR=244.044;RPR=0;RUN=1;SAF=8;SAP=20.3821;SAR=0;SRF=111;SRP=244.044;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:61:61,0:61:2401:0:0:0,-18.3628,-216.248 0/0:20:20,0:20:778:0:0:0,-6.0206,-70.3374 0/1:38:30,8:30:1156:8:320:-17.7269,0,-92.8772 dDocent_Contig_1838 11 . C A 86.094 . AB=0.139535;ABP=51.5402;AC=1;AF=0.166667;AN=6;AO=6;CIGAR=2X1M2X;DP=92;DPB=92;DPRA=1.7551;EPP=16.0391;EPPR=174.557;GTI=0;LEN=1;MEANALT=3;MQM=40;MQMR=60;NS=3;NUMALT=2;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=235;QR=3065;RO=79;RPL=0;RPP=16.0391;RPPR=174.557;RPR=6;RUN=1;SAF=6;SAP=16.0391;SAR=0;SRF=79;SRP=174.557;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|1:43:30,6,6:30:1168:6,6:233,235:-10.1251,0,-94.2027,-1.29855,-78.1463,-95.4848 0|0:26:26,0,0:26:1004:0,0:0,0:0,-7.82678,-90.6636,-7.82678,-90.6636,-90.6636 0|0:23:23,0,0:23:893:0,0:0,0:0,-6.92369,-80.6834,-6.92369,-80.6834,-80.6834 dDocent_Contig_1839 19 . C T 4374.63 . AB=0.263393;ABP=111.933;AC=2;AF=0.333333;AN=6;AO=59;CIGAR=1M1D4M1X1M1X1M1X4M;DP=224;DPB=210.933;DPRA=0;EPP=131.127;EPPR=63.8115;GTI=0;LEN=1;MEANALT=4;MQM=60;MQMR=60;NS=3;NUMALT=4;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=2205;QR=1091;RO=28;RPL=0;RPP=131.127;RPPR=63.8115;RPR=59;RUN=1;SAF=59;SAP=131.127;SAR=0;SRF=28;SRP=63.8115;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 1|0:121:17,26,3,71,3:17:661:26,3,71,3:954,114,2591,95:-230.184,-157.331,-203.827,-225.952,-202.304,-279.37,-23.6375,0,-68.6145,-56.5909,-228.048,-204.4,-273.02,-70.7132,-281.466 0|0:27:3,4,4,12,4:3:119:4,4,12,4:148,139,448,150:-38.2348,-27.0305,-35.6261,-27.8422,-25.5355,-36.4372,-2.4526,-0.148248,-0.963602,-8.6428,-26.8829,-24.576,-25.3879,0,-35.4786 1|0:76:8,29,0,37,2:8:311:29,0,37,2:1103,0,1369,80:-174.463,-86.4122,-103.242,-176.871,-111.972,-202.429,-64.8888,0,-90.4471,-79.309,-170.303,-105.403,-195.861,-83.8788,-195.259 dDocent_Contig_1841 168 . A G 473.668 . AB=0.294118;ABP=28.0461;AC=2;AF=0.333333;AN=6;AO=23;CIGAR=1X;DP=120;DPB=120;DPRA=0;EPP=52.9542;EPPR=211.472;GTI=0;LEN=1;MEANALT=1.33333;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=903;QR=3710;RO=96;RPL=23;RPP=52.9542;RPPR=211.472;RPR=0;RUN=1;SAF=0;SAP=52.9542;SAR=23;SRF=0;SRP=211.472;SRR=96;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:52:49,3:49:1843:3:120:0,-4.46566,-154.901 0/1:41:30,10:30:1191:10:385:-22.8376,0,-95.3236 0/1:27:17,10:17:676:10:398:-28.0521,0,-53.0437 dDocent_Contig_1842 7 . G A 928.738 . AB=0.0984456;ABP=273.319;AC=2;AF=0.333333;AN=6;AO=19;CIGAR=1X3M;DP=237;DPB=237;DPRA=2.19318;EPP=44.2683;EPPR=365.646;GTI=0;LEN=1;MEANALT=3;MQM=60;MQMR=60;NS=3;NUMALT=2;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=734;QR=5733;RO=167;RPL=0;RPP=44.2683;RPPR=365.646;RPR=19;RUN=1;SAF=19;SAP=44.2683;SAR=0;SRF=167;SRP=365.646;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|1:130:85,24,18:85:2836:24,18:910,695:-49.0394,0,-222.284,-17.5346,-172.42,-241.625 0|0:44:41,2,0:41:1476:2,0:78,0:0,-5.74404,-125.804,-12.3422,-126.406,-132.819 0|1:63:41,19,1:41:1421:19,1:726,39:-47.3572,0,-109.868,-56.4922,-112.38,-171.661 dDocent_Contig_1843 38 . A T 406.885 . AB=0.25;ABP=46.4397;AC=1;AF=0.166667;AN=6;AO=27;CIGAR=3X;DP=220;DPB=220;DPRA=0;EPP=61.6401;EPPR=422.104;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=6.93889e-18;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=997;QR=7615;RO=193;RPL=0;RPP=61.6401;RPPR=422.104;RPR=27;RUN=1;SAF=27;SAP=61.6401;SAR=0;SRF=193;SRP=422.104;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|1:80:60,20:60:2366:20:733:-42.2113,0,-189.028 0|0:76:73,3:73:2884:3:115:0,-12.1538,-248.962 0|0:64:60,4:60:2365:4:149:0,-5.49264,-199.249 dDocent_Contig_1844 17 . G A 622.681 . AB=0.212329;ABP=107.955;AC=2;AF=0.333333;AN=6;AO=35;CIGAR=1X;DP=232;DPB=232;DPRA=0;EPP=79.0118;EPPR=430.79;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=1.38778e-17;PAIRED=1;PAIREDR=0.989848;PAO=0;PQA=0;PQR=0;PRO=0;QA=1366;QR=7713;RO=197;RPL=0;RPP=79.0118;RPPR=430.79;RPR=35;RUN=1;SAF=35;SAP=79.0118;SAR=0;SRF=197;SRP=430.79;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:79:63,16:63:2461:16:615:-31.8933,0,-197.855 0/0:86:82,4:82:3175:4:154:0,-11.6557,-271.609 0/1:67:52,15:52:2077:15:597:-33.8977,0,-166.946 dDocent_Contig_1846 202 . C T 103.581 . AB=0.144928;ABP=78.5712;AC=1;AF=0.166667;AN=6;AO=10;CIGAR=1X;DP=86;DPB=86;DPRA=8.11765;EPP=24.725;EPPR=168.042;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=359;QR=2777;RO=76;RPL=10;RPP=24.725;RPPR=168.042;RPR=0;RUN=1;SAF=0;SAP=24.725;SAR=10;SRF=0;SRP=168.042;SRR=76;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:69:59,10:59:2153:10:359:-11.8809,0,-173.258 0/0:5:5,0:5:185:0:0:0,-1.50515,-17.01 0/0:12:12,0:12:439:0:0:0,-3.61236,-39.8535 dDocent_Contig_1847 9 . G T 109.219 . AB=0.183333;ABP=55.2704;AC=2;AF=0.333333;AN=6;AO=11;CIGAR=1X;DP=79;DPB=79;DPRA=1.57895;EPP=26.8965;EPPR=150.67;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=3.46945e-18;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=354;QR=2199;RO=68;RPL=0;RPP=26.8965;RPPR=150.67;RPR=11;RUN=1;SAF=11;SAP=26.8965;SAR=0;SRF=68;SRP=150.67;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:19:19,0:19:625:0:0:0,-5.71957,-56.5552 0/1:40:32,8:32:991:8:255:-11.221,0,-77.4198 0/1:20:17,3:17:583:3:99:-3.21502,0,-46.7631 dDocent_Contig_1848 9 . T G 4967.76 . AB=0.761134;ABP=149.308;AC=3;AF=0.5;AN=6;AO=188;CIGAR=1X;DP=247;DPB=247;DPRA=0;EPP=411.247;EPPR=115.927;GTI=0;LEN=1;MEANALT=1.66667;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=6384;QR=1842;RO=52;RPL=0;RPP=411.247;RPPR=115.927;RPR=188;RUN=1;SAF=188;SAP=411.247;SAR=0;SRF=52;SRP=115.927;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:180:42,132:42:1475:132:4489:-351.401,0,-80.2753 0/1:28:4,24:4:150:24:860:-69.2829,0,-5.43653 0/1:39:6,32:6:217:32:1035:-81.6149,0,-8.06477 dDocent_Contig_1849 8 . T C 94.5871 . AB=0.191489;ABP=41.8658;AC=1;AF=0.166667;AN=6;AO=14;CIGAR=2X;DP=166;DPB=166;DPRA=0;EPP=33.4109;EPPR=326.56;GTI=0;LEN=1;MEANALT=2;MQM=39.1429;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=0;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=441;QR=5013;RO=149;RPL=0;RPP=33.4109;RPPR=326.56;RPR=14;RUN=1;SAF=14;SAP=33.4109;SAR=0;SRF=149;SRP=326.56;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|0:72:70,1:70:2395:1:39:0,-18.2684,-212.377 0|0:47:41,4:41:1307:4:110:0,-3.81073,-107.951 0|1:47:38,9:38:1311:9:292:-11.2826,0,-104.122 dDocent_Contig_1851 39 . T C 6770.23 . AB=0.162712;ABP=294.51;AC=1;AF=0.166667;AN=6;AO=54;CIGAR=1M2I3M1X;DP=379;DPB=487.8;DPRA=0;EPP=120.27;EPPR=231.015;GTI=0;LEN=1;MEANALT=3;MQM=60;MQMR=60;NS=3;NUMALT=2;ODDS=5.55112e-17;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=2151;QR=4105;RO=105;RPL=0;RPP=120.27;RPPR=231.015;RPR=54;RUN=1;SAF=54;SAP=120.27;SAR=0;SRF=105;SRP=231.015;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|0:237:93,39,104:93:3644:39,104:1550,4055:-305.277,-205.66,-493.568,0,-172.036,-268.34 1|0:58:6,9,43:6:224:9,43:363,1716:-151.131,-123.014,-138.639,-11.6148,0,-16.9961 0|0:84:6,6,70:6:237:6,70:238,2730:-224.139,-206.352,-224.049,-1.5619,-1.47146,0 dDocent_Contig_1852 60 . G C 9016.57 . AB=0.732639;ABP=138.396;AC=4;AF=0.666667;AN=6;AO=284;CIGAR=1X;DP=365;DPB=365;DPRA=0;EPP=619.708;EPPR=178.9;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=0.987654;PAO=0;PQA=0;PQR=0;PRO=0;QA=11174;QR=3190;RO=81;RPL=284;RPP=619.708;RPPR=178.9;RPR=0;RUN=1;SAF=284;SAP=619.708;SAR=0;SRF=81;SRP=178.9;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:246:69,177:69:2721:177:7076:-562.443,0,-170.963 0/1:42:8,34:8:319:34:1319:-106.33,0,-16.4333 1/1:77:4,73:4:150:73:2779:-236.407,-9.3142,0 dDocent_Contig_1853 193 . C T 514.502 . AB=0.428571;ABP=5.18177;AC=2;AF=0.333333;AN=6;AO=22;CIGAR=1X;DP=65;DPB=65;DPRA=0;EPP=50.7827;EPPR=96.3836;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=805;QR=1620;RO=43;RPL=22;RPP=50.7827;RPPR=96.3836;RPR=0;RUN=1;SAF=0;SAP=50.7827;SAR=22;SRF=0;SRP=96.3836;SRR=43;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:38:20,18:20:749:18:656:-47.9305,0,-56.2991 0/0:16:15,1:15:573:1:38:0,-1.01921,-48.1152 0/1:11:8,3:8:298:3:111:-7.04248,0,-23.863 dDocent_Contig_1854 66 . C T 86.3959 . AB=0.181818;ABP=32.0291;AC=2;AF=0.333333;AN=6;AO=6;CIGAR=1X1M1X3M1X;DP=46;DPB=46;DPRA=1.26923;EPP=16.0391;EPPR=89.8692;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=233;QR=1525;RO=40;RPL=6;RPP=16.0391;RPPR=89.8692;RPR=0;RUN=1;SAF=6;SAP=16.0391;SAR=0;SRF=40;SRP=89.8692;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|1:26:21,5:21:799:5:195:-10.0968,0,-64.4078 0|0:13:13,0:13:499:0:0:0,-3.91339,-45.2566 0|1:7:6,1:6:227:1:38:-1.69006,0,-18.6866 dDocent_Contig_1855 165 . G A 4386.72 . AB=0.816038;ABP=186.93;AC=3;AF=0.5;AN=6;AO=173;CIGAR=1X;DP=212;DPB=212;DPRA=0;EPP=378.675;EPPR=87.6977;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=5636;QR=1489;RO=39;RPL=173;RPP=378.675;RPPR=87.6977;RPR=0;RUN=1;SAF=0;SAP=378.675;SAR=173;SRF=0;SRP=87.6977;SRR=39;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:107:21,86:21:785:86:2853:-224.789,0,-38.7431 0/1:76:14,62:14:545:62:1962:-153.949,0,-26.5093 0/1:29:4,25:4:159:25:821:-65.4573,0,-5.96208 dDocent_Contig_1856 19 . T A 119.085 . AB=0.15;ABP=66.8516;AC=1;AF=0.166667;AN=6;AO=10;CIGAR=1X;DP=155;DPB=155;DPRA=0.710938;EPP=24.725;EPPR=317.874;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=385;QR=5631;RO=145;RPL=0;RPP=24.725;RPPR=317.874;RPR=10;RUN=1;SAF=10;SAP=24.725;SAR=0;SRF=145;SRP=317.874;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:60:51,9:51:1974:9:346:-13.4313,0,-159.807 0/0:31:30,1:30:1167:1:39:0,-5.43537,-101.414 0/0:64:64,0:64:2490:0:0:0,-19.2659,-224.254 dDocent_Contig_1857 7 . G A 63.219 . AB=0.122807;ABP=73.4498;AC=1;AF=0.166667;AN=6;AO=7;CIGAR=1X;DP=77;DPB=77;DPRA=5.7;EPP=18.2106;EPPR=148.499;GTI=0;LEN=1;MEANALT=2;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=0.955224;PAO=0;PQA=0;PQR=0;PRO=0;QA=272;QR=2037;RO=67;RPL=0;RPP=18.2106;RPPR=148.499;RPR=7;RUN=1;SAF=7;SAP=18.2106;SAR=0;SRF=67;SRP=148.499;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:57:49,7:49:1517:7:272:-7.84477,0,-119.804 0/0:11:10,0:10:317:0:0:0,-3.0103,-28.7084 0/0:9:8,0:8:203:0:0:0,-2.40824,-18.3923 dDocent_Contig_1858 13 . G C 543.157 . AB=0.165899;ABP=213.403;AC=3;AF=0.5;AN=6;AO=36;CIGAR=2X1M1X;DP=217;DPB=217;DPRA=0;EPP=81.1833;EPPR=393.875;GTI=0;LEN=1;MEANALT=1.33333;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=0.972222;PAO=0;PQA=0;PQR=0;PRO=0;QA=1380;QR=6838;RO=180;RPL=0;RPP=81.1833;RPPR=393.875;RPR=36;RUN=1;SAF=36;SAP=81.1833;SAR=0;SRF=180;SRP=393.875;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|1:105:95,10:95:3618:10:392:-4.03065,0,-294.129 0|1:46:35,10:35:1332:10:375:-20.1656,0,-106.229 0|1:66:50,16:50:1888:16:613:-35.641,0,-150.302 dDocent_Contig_1859 76 . G T 506.127 . AB=0.255102;ABP=54.0621;AC=3;AF=0.5;AN=6;AO=25;CIGAR=1X;DP=98;DPB=98;DPRA=0;EPP=57.2971;EPPR=161.528;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=920;QR=2865;RO=73;RPL=25;RPP=57.2971;RPPR=161.528;RPR=0;RUN=1;SAF=25;SAP=57.2971;SAR=0;SRF=73;SRP=161.528;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:56:37,19:37:1468:19:707:-47.0935,0,-115.513 0/1:23:21,2:21:829:2:75:-0.196408,0,-68.0017 0/1:19:15,4:15:568:4:138:-7.03983,0,-45.7397 dDocent_Contig_1860 7 . G T 224.969 . AB=0.025641;ABP=79.2345;AC=0;AF=0;AN=6;AO=5;CIGAR=1X1M;DP=135;DPB=135;DPRA=0;EPP=13.8677;EPPR=250.558;GTI=0;LEN=1;MEANALT=2.66667;MQM=60;MQMR=60;NS=3;NUMALT=3;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=63;QR=3595;RO=114;RPL=0;RPP=13.8677;RPPR=250.558;RPR=5;RUN=1;SAF=5;SAP=13.8677;SAR=0;SRF=114;SRP=250.558;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|0:56:53,0,0,2:53:1695:0,0,2:0,0,22:0,-15.9546,-152.69,-15.9546,-152.69,-152.69,-14.5767,-151.319,-151.319,-150.717 0|0:39:24,2,11,1:24:787:2,11,1:42,386,11:-24.3208,-28.3815,-91.3618,0,-60.5463,-60.4056,-30.8701,-91.2808,-63.0352,-94.1513 0|0:40:37,0,1,2:37:1113:0,1,2:0,38,30:0,-11.1381,-100.197,-7.94502,-97.0782,-96.7772,-9.19336,-98.1067,-94.9881,-97.5046 dDocent_Contig_1861 7 . G A 188.977 . AB=0.137931;ABP=135.096;AC=1;AF=0.166667;AN=6;AO=17;CIGAR=1X;DP=184;DPB=184;DPRA=7.86364;EPP=39.9253;EPPR=359.132;GTI=0;LEN=1;MEANALT=2.5;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=645;QR=5308;RO=164;RPL=0;RPP=39.9253;RPPR=359.132;RPR=17;RUN=1;SAF=17;SAP=39.9253;SAR=0;SRF=164;SRP=359.132;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:116:98,16:98:3161:16:606:-20.4205,0,-250.235 0/0:11:11,0:11:395:0:0:0,-3.31133,-35.886 0/0:57:55,1:55:1752:1:39:0,-13.2709,-154.108 dDocent_Contig_1862 74 . T A 1161.55 . AB=0.542553;ABP=4.48875;AC=3;AF=0.5;AN=6;AO=51;CIGAR=1X;DP=94;DPB=94;DPRA=0;EPP=113.755;EPPR=96.3836;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=1656;QR=1344;RO=43;RPL=51;RPP=113.755;RPPR=96.3836;RPR=0;RUN=1;SAF=51;SAP=113.755;SAR=0;SRF=43;SRP=96.3836;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:48:21,27:21:664:27:857:-62.9741,0,-45.6113 0/1:28:17,11:17:532:11:356:-23.9249,0,-39.753 0/1:18:5,13:5:148:13:443:-34.7786,0,-8.19293 dDocent_Contig_1863 31 . T C 4345.89 . AB=0.541045;ABP=6.93191;AC=3;AF=0.5;AN=6;AO=145;CIGAR=1X;DP=268;DPB=268;DPRA=0;EPP=317.874;EPPR=270.101;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=58.9756;NS=3;NUMALT=1;ODDS=1.38778e-17;PAIRED=1;PAIREDR=0.95935;PAO=0;PQA=0;PQR=0;PRO=0;QA=5780;QR=4865;RO=123;RPL=0;RPP=317.874;RPPR=270.101;RPR=145;RUN=1;SAF=145;SAP=317.874;SAR=0;SRF=123;SRP=270.101;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:149:61,88:61:2410:88:3537:-273.497,0,-169.532 0/1:60:38,22:38:1498:22:863:-59.9155,0,-117.012 0/1:59:24,35:24:957:35:1380:-106.699,0,-68.086 dDocent_Contig_1864 16 . C A 10255.7 . AB=0.427673;ABP=39.1332;AC=3;AF=0.5;AN=6;AO=340;CIGAR=3X3M;DP=795;DPB=795;DPRA=0;EPP=741.311;EPPR=574.108;GTI=0;LEN=1;MEANALT=7.33333;MQM=60;MQMR=60;NS=3;NUMALT=4;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=13488;QR=10359;RO=263;RPL=0;RPP=741.311;RPPR=574.108;RPR=340;RUN=1;SAF=340;SAP=741.311;SAR=0;SRF=263;SRP=574.108;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|1:418:125,0,25,58,206:125:4935:0,25,58,206:0,986,2343,8191:-636.744,-674.373,-1080.43,-593.251,-999.31,-991.785,-481.218,-887.278,-806.156,-869.819,0,-406.057,-324.935,-212.902,-344.045 0|1:165:76,11,8,14,49:76:2998:11,8,14,49:410,309,551,1940:-136.793,-126.493,-369.852,-134.295,-347.787,-378.558,-114.35,-327.841,-335.644,-356.807,0,-213.497,-221.3,-201.354,-231.926 0|1:212:62,8,15,25,85:62:2426:8,15,25,85:298,597,1002,3357:-257.551,-251.838,-448.883,-227.058,-402.135,-421.996,-193.664,-368.742,-343.961,-385.592,0,-175.077,-150.296,-116.902,-173.866 dDocent_Contig_1865 9 . G A 219.187 . AB=0.132143;ABP=332.112;AC=1;AF=0.166667;AN=6;AO=45;CIGAR=1X;DP=442;DPB=442;DPRA=0;EPP=100.727;EPPR=865.085;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=2.77556e-17;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=1464;QR=13526;RO=397;RPL=0;RPP=100.727;RPPR=865.085;RPR=45;RUN=1;SAF=45;SAP=100.727;SAR=0;SRF=397;SRP=865.085;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:280:243,37:243:8243:37:1194:-23.4416,0,-657.501 0/0:61:59,2:59:2085:2:76:0,-11.1482,-180.68 0/0:101:95,6:95:3198:6:194:0,-12.6294,-270.226 dDocent_Contig_1866 9 . G A 59.8459 . AB=0.151515;ABP=37.8197;AC=1;AF=0.166667;AN=6;AO=15;CIGAR=1X;DP=150;DPB=150;DPRA=0;EPP=35.5824;EPPR=296.159;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=0.992593;PAO=0;PQA=0;PQR=0;PRO=0;QA=500;QR=4790;RO=135;RPL=0;RPP=35.5824;RPPR=296.159;RPR=15;RUN=1;SAF=15;SAP=35.5824;SAR=0;SRF=135;SRP=296.159;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:90:83,7:83:2970:7:221:0,-6.89697,-247.302 0/1:33:28,5:28:993:5:193:-7.80737,0,-79.7366 0/0:27:24,3:24:827:3:86:0,-0.106379,-66.7069 dDocent_Contig_1867 8 . T C 8055.86 . AB=0.789655;ABP=214.347;AC=4;AF=0.666667;AN=6;AO=295;CIGAR=1X;DP=363;DPB=363;DPRA=0;EPP=643.595;EPPR=150.67;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=10169;QR=2129;RO=68;RPL=0;RPP=643.595;RPPR=150.67;RPR=295;RUN=1;SAF=295;SAP=643.595;SAR=0;SRF=68;SRP=150.67;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:216:51,165:51:1563:165:5731:-450.8,0,-75.8936 0/1:74:10,64:10:355:64:2196:-175.59,0,-10.0118 1/1:73:7,66:7:211:66:2242:-182.719,-2.68977,0 dDocent_Contig_1868 21 . T A 13081.6 . AB=0.898734;ABP=439.394;AC=5;AF=0.833333;AN=6;AO=397;CIGAR=1X;DP=436;DPB=436;DPRA=0;EPP=865.085;EPPR=87.6977;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=15909;QR=1570;RO=39;RPL=0;RPP=865.085;RPPR=87.6977;RPR=397;RUN=1;SAF=397;SAP=865.085;SAR=0;SRF=39;SRP=87.6977;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:316:32,284:32:1284:284:11375:-927.825,0,-20.6988 1/1:26:1,25:1:41:25:1007:-86.8284,-3.73221,0 1/1:94:6,88:6:245:88:3527:-295.027,-5.86735,0 dDocent_Contig_1869 20 . T C 467.127 . AB=0.242105;ABP=57.8914;AC=3;AF=0.5;AN=6;AO=23;CIGAR=1X;DP=95;DPB=95;DPRA=0;EPP=52.9542;EPPR=159.356;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=886;QR=2857;RO=72;RPL=0;RPP=52.9542;RPPR=159.356;RPR=23;RUN=1;SAF=23;SAP=52.9542;SAR=0;SRF=72;SRP=159.356;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:27:24,3:24:958:3:122:-3.24468,0,-78.3915 0/1:52:37,15:37:1457:15:567:-35.6942,0,-115.717 0/1:16:11,5:11:442:5:197:-13.2885,0,-35.3177 dDocent_Contig_1870 174 . A G 2256.78 . AB=0.830986;ABP=70.5706;AC=4;AF=0.666667;AN=6;AO=70;CIGAR=1X;DP=82;DPB=82;DPRA=0;EPP=155.013;EPPR=29.068;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=2774;QR=479;RO=12;RPL=70;RPP=155.013;RPPR=29.068;RPR=0;RUN=1;SAF=0;SAP=155.013;SAR=70;SRF=0;SRP=29.068;SRR=12;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:48:7,41:7:280:41:1611:-130.774,0,-11.1218 0/1:23:5,18:5:199:18:718:-58.0214,0,-11.3647 1/1:11:0,11:0:0:11:445:-40.4057,-3.31133,0 dDocent_Contig_1872 18 . C T 2560.73 . AB=0.3;ABP=114.19;AC=3;AF=0.5;AN=6;AO=96;CIGAR=1M1D1M1X1M;DP=320;DPB=310.4;DPRA=0;EPP=211.472;EPPR=385.189;GTI=0;LEN=1;MEANALT=1.66667;MQM=60;MQMR=60;NS=3;NUMALT=2;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=3816;QR=6931;RO=176;RPL=0;RPP=211.472;RPPR=385.189;RPR=96;RUN=1;SAF=96;SAP=211.472;SAR=0;SRF=176;SRP=385.189;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|1:196:88,66,42:88:3458:66,42:2633,1606:-190.357,0,-264.546,-85.102,-152.665,-356.862 0|1:51:41,10,0:41:1613:10,0:395,0:-20.5564,0,-130.064,-32.8987,-133.074,-165.579 0|1:73:47,20,6:47:1860:20,6:788,232:-50.6821,0,-147.058,-45.7811,-134.028,-197.047 dDocent_Contig_1874 7 . A G 1025.09 . AB=0.563218;ABP=6.03039;AC=3;AF=0.5;AN=6;AO=49;CIGAR=1X;DP=87;DPB=87;DPRA=0;EPP=109.412;EPPR=83.3548;GTI=0;LEN=1;MEANALT=1.33333;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=1480;QR=1413;RO=37;RPL=0;RPP=109.412;RPPR=83.3548;RPR=49;RUN=1;SAF=49;SAP=109.412;SAR=0;SRF=37;SRP=83.3548;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:38:16,22:16:607:22:667:-48.8652,0,-43.5282 0/1:21:6,15:6:224:15:429:-32.5572,0,-14.1978 0/1:28:15,12:15:582:12:384:-26.6095,0,-44.468 dDocent_Contig_1875 33 . C T 67.4076 . AB=0.12069;ABP=75.4926;AC=1;AF=0.166667;AN=6;AO=10;CIGAR=1X;DP=224;DPB=224;DPRA=0.993333;EPP=24.725;EPPR=450.496;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=0.976636;PAO=0;PQA=0;PQR=0;PRO=0;QA=406;QR=8582;RO=214;RPL=0;RPP=24.725;RPPR=459.06;RPR=10;RUN=1;SAF=10;SAP=24.725;SAR=0;SRF=213;SRP=459.06;SRR=1;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:91:88,3:88:3535:3:121:0,-16.1135,-306.893 0/1:58:51,7:51:2038:7:285:-8.56467,0,-166.149 0/0:75:75,0:75:3009:0:0:0,-22.5772,-270.891 dDocent_Contig_1876 10 . A T 594.87 . AB=0.0789474;ABP=120.041;AC=0;AF=0;AN=6;AO=6;CIGAR=1X3M1X1M1X;DP=146;DPB=146;DPRA=0;EPP=16.0391;EPPR=233.186;GTI=0;LEN=1;MEANALT=3;MQM=60;MQMR=60;NS=3;NUMALT=3;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=232;QR=4133;RO=106;RPL=0;RPP=16.0391;RPPR=233.186;RPR=6;RUN=1;SAF=6;SAP=16.0391;SAR=0;SRF=106;SRP=233.186;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|0:70:54,0,16,0:54:2116:0,16,0:0,631,0:-36.0541,-52.3097,-226.307,0,-174.391,-169.574,-52.3097,-226.307,-174.391,-226.307 0|0:40:24,4,2,10:24:930:4,2,10:152,75,389:-24.7484,-19.5096,-94.7038,-25.8325,-89.7666,-101.629,0,-63.9407,-70.2637,-73.3947 0|0:36:28,2,2,4:28:1087:2,2,4:80,79,154:-4.20652,-6.04228,-94.7497,-6.13351,-88.8508,-94.8396,0,-82.7106,-82.8005,-88.0974 dDocent_Contig_1877 27 . G A 279.151 . AB=0.314286;ABP=13.4954;AC=2;AF=0.333333;AN=6;AO=12;CIGAR=1X;DP=52;DPB=52;DPRA=0;EPP=29.068;EPPR=89.8692;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=0;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=481;QR=1586;RO=40;RPL=0;RPP=29.068;RPPR=89.8692;RPR=12;RUN=1;SAF=12;SAP=29.068;SAR=0;SRF=40;SRP=89.8692;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:13:12,1:12:465:1:41:-0.181177,0,-38.2793 0/0:17:16,1:16:645:1:40:0,-1.12183,-54.3881 0/1:22:12,10:12:476:10:400:-29.7367,0,-36.5659 dDocent_Contig_1878 8 . T G 2629.91 . AB=0.0887372;ABP=433.458;AC=0;AF=0;AN=6;AO=26;CIGAR=2X;DP=293;DPB=293;DPRA=0;EPP=59.4686;EPPR=70.3259;GTI=0;LEN=1;MEANALT=6;MQM=44.7308;MQMR=51.871;NS=3;NUMALT=4;ODDS=0;PAIRED=1;PAIREDR=0.967742;PAO=0;PQA=0;PQR=0;PRO=0;QA=859;QR=1064;RO=31;RPL=0;RPP=59.4686;RPPR=70.3259;RPR=26;RUN=1;SAF=26;SAP=59.4686;SAR=0;SRF=31;SRP=70.3259;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|0:120:14,12,8,26,53:14:459:12,8,26,53:460,235,655,1397:-104.535,-72.1577,-104.136,-90.404,-89.4025,-123.585,-63.7615,-62.7584,-81.0055,-91.523,-9.37087,-8.36397,-26.6166,0,-29.0055 0|0:67:6,0,6,23,30:6:211:0,6,23,30:0,223,606,700:-67.8723,-69.6785,-86.8578,-51.9344,-69.1163,-67.3101,-27.4035,-44.5896,-26.8406,-37.6659,-25.0329,-42.217,-24.4697,0,-33.1861 0|0:106:11,5,12,36,40:11:394:5,12,36,40:193,401,830,1048:-96.1068,-84.1537,-114.45,-69.9737,-86.5124,-98.1643,-43.357,-59.8956,-45.719,-64.3231,-24.2116,-40.7529,-26.5738,0,-43.9781 dDocent_Contig_1881 107 . N G 41.2972 . AB=0;ABP=0;AC=2;AF=1;AN=2;AO=2;CIGAR=1X;DP=2;DPB=2;DPRA=0;EPP=7.35324;EPPR=0;GTI=0;LEN=1;MEANALT=1;MQM=22;MQMR=0;NS=1;NUMALT=1;ODDS=5.99146;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=68;QR=0;RO=0;RPL=0;RPP=7.35324;RPPR=0;RPR=2;RUN=1;SAF=0;SAP=7.35324;SAR=2;SRF=0;SRP=0;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL ./.:.:.:.:.:.:.:. 1/1:2:0,2:0:0:2:68:-4.1286,-0.60206,0 ./.:.:.:.:.:.:.:. dDocent_Contig_1882 38 . A G 5318.07 . AB=0.682353;ABP=76.6615;AC=4;AF=0.666667;AN=6;AO=174;CIGAR=1X3M1X;DP=255;DPB=255;DPRA=0;EPP=380.846;EPPR=50.7827;GTI=0;LEN=1;MEANALT=4.33333;MQM=59.4138;MQMR=60;NS=3;NUMALT=3;ODDS=0;PAIRED=0.982759;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=6097;QR=834;RO=22;RPL=0;RPP=380.846;RPPR=50.7827;RPR=174;RUN=1;SAF=174;SAP=380.846;SAR=0;SRF=22;SRP=50.7827;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 1|0:134:13,10,87,23:13:493:10,87,23:360,3047,878:-274.729,-249.268,-286.685,-31.6121,-42.6689,-45.8487,-206.605,-217.659,0,-240.109 1|0:50:3,5,33,8:3:112:5,33,8:192,1175,291:-107.313,-92.4515,-100.118,-14.5896,-7.99369,-13.8267,-84.4482,-77.8548,0,-91.2117 1|1:71:6,8,54,1:6:229:8,54,1:288,1875,40:-155.288,-133.595,-149.977,-4.69454,0,-7.23175,-153.799,-149.09,-20.1906,-172.288 dDocent_Contig_1883 36 . C T 845.888 . AB=0.26087;ABP=71.5533;AC=3;AF=0.5;AN=6;AO=36;CIGAR=1X;DP=138;DPB=138;DPRA=0;EPP=81.1833;EPPR=224.5;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=1451;QR=4032;RO=102;RPL=0;RPP=81.1833;RPPR=224.5;RPR=36;RUN=1;SAF=36;SAP=81.1833;SAR=0;SRF=102;SRP=224.5;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:80:54,26:54:2139:26:1043:-70.076,0,-168.608 0/1:31:24,7:24:938:7:287:-16.8733,0,-75.3878 0/1:27:24,3:24:955:3:121:-3.15239,0,-78.1237 dDocent_Contig_1884 7 . G A 158.371 . AB=0.209302;ABP=34.5724;AC=2;AF=0.333333;AN=6;AO=9;CIGAR=1X;DP=55;DPB=55;DPRA=1.79167;EPP=22.5536;EPPR=51.3492;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=48.7826;NS=3;NUMALT=1;ODDS=3.46945e-18;PAIRED=1;PAIREDR=0.673913;PAO=0;PQA=0;PQR=0;PRO=0;QA=350;QR=1529;RO=46;RPL=0;RPP=22.5536;RPPR=102.898;RPR=9;RUN=1;SAF=9;SAP=22.5536;SAR=0;SRF=39;SRP=51.3492;SRR=7;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:15:9,6:9:262:6:234:-16.9157,0,-19.3486 0/1:28:25,3:25:882:3:116:-2.38886,0,-46.3995 0/0:12:12,0:12:385:0:0:0,-3.61236,-34.9456 dDocent_Contig_1885 102 . N A 110.048 . AB=0;ABP=0;AC=2;AF=1;AN=2;AO=4;CIGAR=6X;DP=4;DPB=4;DPRA=0;EPP=11.6962;EPPR=0;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=0;NS=1;NUMALT=1;ODDS=7.37776;PAIRED=1;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=119;QR=0;RO=0;RPL=0;RPP=11.6962;RPPR=0;RPR=4;RUN=1;SAF=0;SAP=11.6962;SAR=4;SRF=0;SRP=0;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 1|1:4:0,4:0:0:4:119:-11.0046,-1.20412,0 .:.:.:.:.:.:.:. .:.:.:.:.:.:.:. dDocent_Contig_1887 40 . C T 62.0525 . AB=0.2;ABP=18.6449;AC=1;AF=0.166667;AN=6;AO=4;CIGAR=1X;DP=44;DPB=44;DPRA=1.66667;EPP=11.6962;EPPR=89.8692;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=0;PAIREDR=0.925;PAO=0;PQA=0;PQR=0;PRO=0;QA=152;QR=1600;RO=40;RPL=0;RPP=11.6962;RPPR=89.8692;RPR=4;RUN=1;SAF=4;SAP=11.6962;SAR=0;SRF=40;SRP=89.8692;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:14:14,0:14:562:0:0:0,-4.21442,-50.92 0/1:20:16,4:16:636:4:152:-8.02916,0,-51.5514 0/0:10:10,0:10:402:0:0:0,-3.0103,-36.5396 dDocent_Contig_1888 50 . A G 30.5878 . AB=0.222222;ABP=9.04217;AC=1;AF=0.166667;AN=6;AO=2;CIGAR=1X;DP=54;DPB=54;DPRA=0.4;EPP=7.35324;EPPR=115.927;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=0;PAIREDR=0.75;PAO=0;PQA=0;PQR=0;PRO=0;QA=80;QR=2011;RO=52;RPL=2;RPP=7.35324;RPPR=115.927;RPR=0;RUN=1;SAF=2;SAP=7.35324;SAR=0;SRF=52;SRP=115.927;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:23:23,0:23:910:0:0:0,-6.92369,-82.202 0/0:22:22,0:22:827:0:0:0,-6.62266,-74.7305 0/1:9:7,2:7:274:2:80:-4.8823,0,-22.3158 dDocent_Contig_1889 57 . T C 2943.44 . AB=0.75188;ABP=76.3016;AC=3;AF=0.5;AN=6;AO=100;CIGAR=1X3M;DP=133;DPB=133;DPRA=0;EPP=220.158;EPPR=65.983;GTI=0;LEN=1;MEANALT=1.66667;MQM=60;MQMR=60;NS=3;NUMALT=2;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=3762;QR=1048;RO=29;RPL=100;RPP=220.158;RPPR=65.983;RPR=0;RUN=1;SAF=100;SAP=220.158;SAR=0;SRF=29;SRP=65.983;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|1:81:12,0,68:12:442:0,68:0,2586:-208.475,-212.087,-248.226,0,-36.1298,-15.6598 0|1:31:13,3,15:13:474:3,15:108,573:-43.1174,-38.2222,-76.0338,0,-29.9151,-34.211 0|1:21:4,0,17:4:132:0,17:0,603:-48.274,-49.4781,-60.1438,0,-11.0002,-5.8827 dDocent_Contig_1890 43 . T A 108.918 . AB=0.24;ABP=17.6895;AC=1;AF=0.166667;AN=6;AO=12;CIGAR=1X;DP=100;DPB=100;DPRA=0;EPP=9.52472;EPPR=194.1;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=0.5;PAIREDR=0.988636;PAO=0;PQA=0;PQR=0;PRO=0;QA=457;QR=3018;RO=88;RPL=6;RPP=3.0103;RPPR=194.1;RPR=6;RUN=1;SAF=9;SAP=9.52472;SAR=3;SRF=88;SRP=194.1;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:62:57,5:57:1989:5:198:0,-0.46678,-161.062 0/1:25:19,6:19:621:6:221:-12.7142,0,-48.6661 0/0:13:12,1:12:408:1:38:0,-0.116121,-33.2459 dDocent_Contig_1891 49 . A G 56.9083 . AB=0.135135;ABP=45.7942;AC=1;AF=0.166667;AN=6;AO=11;CIGAR=1X;DP=150;DPB=150;DPRA=2.38462;EPP=26.8965;EPPR=304.845;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=6.93889e-18;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=438;QR=5494;RO=139;RPL=0;RPP=26.8965;RPPR=304.845;RPR=11;RUN=1;SAF=11;SAP=26.8965;SAR=0;SRF=139;SRP=304.845;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:87:81,6:81:3212:6:235:0,-4.6691,-267.639 0/0:26:26,0:26:990:0:0:0,-7.82678,-89.3957 0/1:37:32,5:32:1292:5:203:-7.51474,0,-105.406 dDocent_Contig_1892 209 . N G 77.8076 . AB=0;ABP=0;AC=2;AF=1;AN=2;AO=2;CIGAR=1X;DP=2;DPB=2;DPRA=0;EPP=7.35324;EPPR=0;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=0;NS=1;NUMALT=1;ODDS=5.99146;PAIRED=1;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=82;QR=0;RO=0;RPL=2;RPP=7.35324;RPPR=0;RPR=0;RUN=1;SAF=0;SAP=7.35324;SAR=2;SRF=0;SRP=0;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 1/1:2:0,2:0:0:2:82:-7.77968,-0.60206,0 ./.:.:.:.:.:.:.:. ./.:.:.:.:.:.:.:. dDocent_Contig_1893 38 . G A 4259.05 . AB=0.622807;ABP=32.8776;AC=3;AF=0.5;AN=6;AO=142;CIGAR=1X;DP=228;DPB=228;DPRA=0;EPP=311.359;EPPR=189.757;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=5549;QR=3402;RO=86;RPL=0;RPP=311.359;RPPR=189.757;RPR=142;RUN=1;SAF=142;SAP=311.359;SAR=0;SRF=86;SRP=189.757;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:120:50,70:50:1978:70:2724:-209.168,0,-142.088 0/1:44:24,20:24:938:20:798:-58.8919,0,-71.4759 0/1:64:12,52:12:486:52:2027:-163.369,0,-24.8253 dDocent_Contig_1894 87 . C A 858.575 . AB=0.231707;ABP=54.2782;AC=3;AF=0.5;AN=6;AO=19;CIGAR=3M1X;DP=82;DPB=99.5;DPRA=0;EPP=44.2683;EPPR=63.8115;GTI=0;LEN=1;MEANALT=2;MQM=60;MQMR=60;NS=3;NUMALT=2;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=650;QR=952;RO=28;RPL=19;RPP=44.2683;RPPR=63.8115;RPR=0;RUN=1;SAF=19;SAP=44.2683;SAR=0;SRF=28;SRP=63.8115;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|1:33:13,15,5:13:442:15,5:497,177:-36.2703,0,-31.3277,-25.76,-21.4213,-60.1122 0|1:32:10,10,12:10:338:10,12:332,404:-29.7253,-5.87712,-30.267,0,-0.544933,-23.7902 0|1:17:5,10,2:5:172:10,2:332,69:-25.3453,0,-10.9584,-21.2427,-8.36279,-34.614 dDocent_Contig_1895 18 . A T 344.52 . AB=0.206897;ABP=67.9298;AC=2;AF=0.333333;AN=6;AO=18;CIGAR=1X;DP=129;DPB=129;DPRA=1.03571;EPP=42.0968;EPPR=244.044;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=6.93889e-18;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=705;QR=4390;RO=111;RPL=0;RPP=42.0968;RPPR=244.044;RPR=18;RUN=1;SAF=18;SAP=42.0968;SAR=0;SRF=111;SRP=244.044;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:69:56,13:56:2223:13:510:-25.4706,0,-179.473 0/0:42:42,0:42:1656:0:0:0,-12.6433,-149.269 0/1:18:13,5:13:511:5:195:-12.5043,0,-40.9129 dDocent_Contig_1896 77 . T A 1179.58 . AB=0.172414;ABP=435.508;AC=3;AF=0.5;AN=6;AO=80;CIGAR=1X;DP=464;DPB=464;DPRA=0;EPP=176.728;EPPR=834.684;GTI=0;LEN=1;MEANALT=1.33333;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=2912;QR=13815;RO=383;RPL=80;RPP=176.728;RPPR=834.684;RPR=0;RUN=1;SAF=80;SAP=176.728;SAR=0;SRF=383;SRP=834.684;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:259:204,55:204:7356:55:1992:-101.577,0,-584.075 0/1:93:83,10:83:3046:10:372:-5.83236,0,-246.342 0/1:112:96,15:96:3413:15:548:-16.0714,0,-273.81 dDocent_Contig_1897 137 . T C 3279.46 . AB=0.75;ABP=79.0118;AC=3;AF=0.5;AN=6;AO=105;CIGAR=1X;DP=140;DPB=140;DPRA=0;EPP=231.015;EPPR=79.0118;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=4165;QR=1315;RO=35;RPL=0;RPP=231.015;RPPR=79.0118;RPR=105;RUN=1;SAF=0;SAP=231.015;SAR=105;SRF=0;SRP=79.0118;SRR=35;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:52:10,42:10:366:42:1669:-134.783,0,-17.6258 0/1:68:20,48:20:757:48:1912:-151.815,0,-47.9845 0/1:20:5,15:5:192:15:584:-46.8697,0,-11.6292 dDocent_Contig_1898 8 . T C 1822.4 . AB=0.0773481;ABP=283.85;AC=0;AF=0;AN=6;AO=14;CIGAR=4X;DP=247;DPB=247;DPRA=0;EPP=33.4109;EPPR=194.1;GTI=0;LEN=1;MEANALT=5.5;MQM=14.9286;MQMR=59.6818;NS=3;NUMALT=5;ODDS=0;PAIRED=0;PAIREDR=0.852273;PAO=0;PQA=0;PQR=0;PRO=0;QA=501;QR=3383;RO=88;RPL=0;RPP=33.4109;RPPR=194.1;RPR=14;RUN=1;SAF=14;SAP=33.4109;SAR=0;SRF=88;SRP=194.1;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|0:107:34,16,13,2,34,3:34:1309:16,13,2,34,3:517,462,80,1156,118:-83.5093,-54.6724,-157.361,-80.0061,-148.437,-183.585,-87.1849,-155.619,-180.941,-194.085,0,-68.4612,-93.7935,-100.968,-97.2922,-84.0403,-152.475,-177.797,-184.985,-97.8241,-190.64 0|0:66:25,18,0,4,14,3:25:952:18,0,4,14,3:620,0,157,485,91:-37.4828,0,-72.6601,-45.0086,-78.0786,-123.089,-32.0895,-65.1635,-110.174,-108.97,-5.61173,-38.6966,-83.7005,-70.7845,-79.4861,-37.7284,-70.8002,-115.809,-102.894,-76.421,-114.906 0|0:74:29,6,1,4,28,6:29:1122:6,1,4,28,6:211,39,160,934,228:-66.7704,-58.3397,-148.719,-74.9072,-149.93,-166.787,-62.3211,-137.349,-153.913,-153.303,0,-75.0286,-91.5916,-79.0082,-83.7552,-56.7969,-131.826,-148.389,-135.808,-73.4859,-147.178 dDocent_Contig_1899 16 . A T 54.5039 . AB=0.230769;ABP=11.1951;AC=1;AF=0.166667;AN=6;AO=3;CIGAR=1X3M1X;DP=70;DPB=70;DPRA=0.45614;EPP=9.52472;EPPR=148.499;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=120;QR=2617;RO=67;RPL=0;RPP=9.52472;RPPR=148.499;RPR=3;RUN=1;SAF=3;SAP=9.52472;SAR=0;SRF=67;SRP=148.499;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|0:39:39,0:39:1528:0:0:0,-11.7402,-137.782 0|1:13:10,3:10:386:3:120:-7.2743,0,-31.1827 0|0:18:18,0:18:703:0:0:0,-5.41854,-63.6026 dDocent_Contig_1900 41 . C T 44.8131 . AB=0.148148;ABP=32.0437;AC=2;AF=0.333333;AN=6;AO=4;CIGAR=1X;DP=65;DPB=65;DPRA=0.355263;EPP=11.6962;EPPR=135.47;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=157;QR=2439;RO=61;RPL=0;RPP=11.6962;RPPR=135.47;RPR=4;RUN=1;SAF=4;SAP=11.6962;SAR=0;SRF=61;SRP=135.47;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:38:38,0:38:1525:0:0:0,-11.4391,-137.488 0/1:12:11,1:11:439:1:41:-0.482207,0,-36.2524 0/1:15:12,3:12:475:3:116:-6.30083,0,-38.583 dDocent_Contig_1901 64 . A G 91.1436 . AB=0.184211;ABP=35.9253;AC=3;AF=0.5;AN=6;AO=7;CIGAR=1X;DP=38;DPB=38;DPRA=0;EPP=18.2106;EPPR=70.3259;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=257;QR=1228;RO=31;RPL=7;RPP=18.2106;RPPR=70.3259;RPR=0;RUN=1;SAF=7;SAP=18.2106;SAR=0;SRF=31;SRP=70.3259;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:16:12,4:12:473:4:148:-8.86069,0,-38.1021 0/1:9:8,1:8:318:1:28:-0.0904566,0,-26.2758 0/1:13:11,2:11:437:2:81:-3.77234,0,-35.7709 dDocent_Contig_1902 12 . C G 2289.87 . AB=0.413462;ABP=16.5402;AC=3;AF=0.5;AN=6;AO=86;CIGAR=1X;DP=208;DPB=208;DPRA=0;EPP=189.757;EPPR=267.93;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=0.991803;PAO=0;PQA=0;PQR=0;PRO=0;QA=3292;QR=4738;RO=122;RPL=0;RPP=189.757;RPPR=267.93;RPR=86;RUN=1;SAF=86;SAP=189.757;SAR=0;SRF=122;SRP=267.93;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:137:95,42:95:3716:42:1632:-105.874,0,-293.238 0/1:39:16,23:16:609:23:875:-67.3127,0,-43.391 0/1:32:11,21:11:413:21:785:-61.3241,0,-27.8736 dDocent_Contig_1904 41 . T A 1562.63 . AB=0.542857;ABP=4.68544;AC=3;AF=0.5;AN=6;AO=57;CIGAR=1M1D2M1X1M;DP=105;DPB=94;DPRA=0;EPP=126.784;EPPR=100.727;GTI=0;LEN=1;MEANALT=1.33333;MQM=60;MQMR=60;NS=3;NUMALT=2;ODDS=6.93889e-18;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=2132;QR=1750;RO=45;RPL=0;RPP=126.784;RPPR=100.727;RPR=57;RUN=1;SAF=57;SAP=126.784;SAR=0;SRF=45;SRP=100.727;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|1:62:21,41,0:21:807:41,0:1518,0:-118.221,0,-54.2871,-124.542,-66.6293,-190.792 0|1:14:5,9,0:5:197:9,0:349,0:-27.556,0,-13.892,-29.0612,-16.6013,-45.271 0|1:29:19,7,3:19:746:7,3:265,112:-16.0093,0,-59.2642,-12.5603,-52.2039,-73.0223 dDocent_Contig_1905 12 . G A 24172.3 . AB=0.8627;ABP=1001.68;AC=3;AF=0.5;AN=6;AO=754;CIGAR=1X;DP=874;DPB=874;DPRA=0;EPP=1640.3;EPPR=261.416;GTI=0;LEN=1;MEANALT=1.33333;MQM=60;MQMR=56.3866;NS=3;NUMALT=1;ODDS=5.55112e-17;PAIRED=0.997347;PAIREDR=0.831933;PAO=0;PQA=0;PQR=0;PRO=0;QA=29864;QR=4710;RO=119;RPL=0;RPP=1640.3;RPPR=261.416;RPR=754;RUN=1;SAF=754;SAP=1640.3;SAR=0;SRF=119;SRP=261.416;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:255:37,218:37:1466:218:8680:-703.945,0,-53.3754 0/1:363:47,315:47:1845:315:12408:-1006.53,0,-53.5574 0/1:256:35,221:35:1399:221:8776:-712.275,0,-45.6893 dDocent_Contig_1908 1 . N G 40.2977 . AB=0;ABP=0;AC=2;AF=1;AN=2;AO=2;CIGAR=1X;DP=2;DPB=2;DPRA=0;EPP=7.35324;EPPR=0;GTI=0;LEN=1;MEANALT=1;MQM=27.5;MQMR=0;NS=1;NUMALT=1;ODDS=5.99146;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=54;QR=0;RO=0;RPL=0;RPP=7.35324;RPPR=0;RPR=2;RUN=1;SAF=0;SAP=7.35324;SAR=2;SRF=0;SRP=0;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 1/1:2:0,2:0:0:2:54:-4.02865,-0.60206,0 ./.:.:.:.:.:.:.:. ./.:.:.:.:.:.:.:. dDocent_Contig_1909 8 . T C 3499.61 . AB=0.480392;ABP=4.03217;AC=3;AF=0.5;AN=6;AO=147;CIGAR=1X;DP=306;DPB=306;DPRA=0;EPP=322.217;EPPR=348.274;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=1.38778e-17;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=4965;QR=5315;RO=159;RPL=0;RPP=322.217;RPPR=348.274;RPR=147;RUN=1;SAF=147;SAP=322.217;SAR=0;SRF=159;SRP=348.274;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:174:75,99:75:2447:99:3370:-251.087,0,-168.075 0/1:65:42,23:42:1472:23:747:-47.9527,0,-113.185 0/1:67:42,25:42:1396:25:848:-56.4442,0,-105.731 dDocent_Contig_1910 19 . C A 47.0507 . AB=0.14;ABP=59.2949;AC=1;AF=0.166667;AN=6;AO=9;CIGAR=1X;DP=125;DPB=125;DPRA=3.40625;EPP=22.5536;EPPR=250.558;GTI=0;LEN=1;MEANALT=2;MQM=34;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=0;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=346;QR=4525;RO=114;RPL=0;RPP=22.5536;RPPR=250.558;RPR=9;RUN=1;SAF=9;SAP=22.5536;SAR=0;SRF=114;SRP=250.558;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:50:41,7:41:1629:7:276:-6.22794,0,-132.005 0/0:59:57,2:57:2253:2:70:0,-11.964,-197.154 0/0:16:16,0:16:643:0:0:0,-4.81648,-58.205 dDocent_Contig_1911 98 . N A 66.4848 . AB=0;ABP=0;AC=2;AF=1;AN=2;AO=2;CIGAR=1X;DP=2;DPB=2;DPRA=0;EPP=7.35324;EPPR=0;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=0;NS=1;NUMALT=1;ODDS=5.99146;PAIRED=1;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=70;QR=0;RO=0;RPL=2;RPP=7.35324;RPPR=0;RPR=0;RUN=1;SAF=2;SAP=7.35324;SAR=0;SRF=0;SRP=0;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 1/1:2:0,2:0:0:2:70:-6.6474,-0.60206,0 ./.:.:.:.:.:.:.:. ./.:.:.:.:.:.:.:. dDocent_Contig_1915 11 . G A 37.3501 . AB=0.2;ABP=14.7363;AC=1;AF=0.166667;AN=6;AO=7;CIGAR=1X;DP=73;DPB=73;DPRA=0;EPP=18.2106;EPPR=146.327;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=3.46945e-18;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=257;QR=2548;RO=66;RPL=0;RPP=18.2106;RPPR=146.327;RPR=7;RUN=1;SAF=7;SAP=18.2106;SAR=0;SRF=66;SRP=146.327;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:33:31,2:31:1193:2:80:0,-2.34241,-100.061 0/0:25:23,2:23:889:2:69:0,-0.97321,-73.7711 0/1:15:12,3:12:466:3:108:-5.55868,0,-37.7723 dDocent_Contig_1917 50 . C T 4239.84 . AB=0.724324;ABP=83.8712;AC=3;AF=0.5;AN=6;AO=134;CIGAR=1X;DP=185;DPB=185;DPRA=0;EPP=293.988;EPPR=113.755;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=5384;QR=2035;RO=51;RPL=134;RPP=293.988;RPPR=113.755;RPR=0;RUN=1;SAF=134;SAP=293.988;SAR=0;SRF=51;SRP=113.755;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:113:37,76:37:1482:76:3040:-239.668,0,-99.6129 0/1:32:7,25:7:274:25:1011:-81.651,0,-15.3944 0/1:40:7,33:7:279:33:1333:-108.188,0,-13.4402 dDocent_Contig_1918 7 . G A 4358.58 . AB=0.575758;ABP=16.1707;AC=3;AF=0.5;AN=6;AO=152;CIGAR=1X;DP=264;DPB=264;DPRA=0;EPP=333.074;EPPR=241.872;GTI=0;LEN=1;MEANALT=1.66667;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=0.921053;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=5775;QR=3396;RO=110;RPL=0;RPP=333.074;RPPR=241.872;RPR=152;RUN=1;SAF=152;SAP=333.074;SAR=0;SRF=110;SRP=241.872;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:137:54,83:54:1641:83:3162:-243.497,0,-106.682 0/1:62:27,34:27:837:34:1269:-96.0209,0,-57.1216 0/1:65:29,35:29:918:35:1344:-101.863,0,-63.5099 dDocent_Contig_1919 61 . A T 5116.25 . AB=0.827411;ABP=186.439;AC=3;AF=0.5;AN=6;AO=163;CIGAR=1X;DP=197;DPB=197;DPRA=0;EPP=356.96;EPPR=76.8404;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=0.993865;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=6377;QR=1298;RO=34;RPL=163;RPP=356.96;RPPR=76.8404;RPR=0;RUN=1;SAF=163;SAP=356.96;SAR=0;SRF=34;SRP=76.8404;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:122:22,100:22:872:100:3901:-314.37,0,-42.0681 0/1:15:2,13:2:48:13:517:-42.3606,0,-0.0404429 0/1:60:10,50:10:378:50:1959:-158.456,0,-16.3094 dDocent_Contig_1921 44 . C T 374.851 . AB=0.482759;ABP=3.08518;AC=1;AF=0.166667;AN=6;AO=14;CIGAR=1X;DP=119;DPB=119;DPRA=0.644444;EPP=33.4109;EPPR=231.015;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=530;QR=3909;RO=105;RPL=0;RPP=33.4109;RPPR=231.015;RPR=14;RUN=1;SAF=14;SAP=33.4109;SAR=0;SRF=105;SRP=231.015;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:59:59,0:59:2211:0:0:0,-17.7608,-199.206 0/0:31:31,0:31:1146:0:0:0,-9.33193,-103.436 0/1:29:15,14:15:552:14:530:-39.309,0,-41.2825 dDocent_Contig_1922 47 . A C 6320.53 . AB=0.647059;ABP=54.1038;AC=6;AF=1;AN=6;AO=176;CIGAR=1X1M;DP=272;DPB=272;DPRA=0;EPP=385.189;EPPR=85.5263;GTI=0;LEN=1;MEANALT=2;MQM=60;MQMR=60;NS=3;NUMALT=2;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=7090;QR=1502;RO=38;RPL=0;RPP=385.189;RPPR=85.5263;RPR=176;RUN=1;SAF=176;SAP=385.189;SAR=0;SRF=38;SRP=85.5263;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 1|1:142:24,32,86:24:952:32,86:1267,3473:-304.997,-207.948,-276.676,-25.9126,0,-78.387 1|1:37:5,9,23:5:195:9,23:348,929:-87.64,-60.5712,-73.8877,-12.5471,0,-21.6528 1|1:93:9,17,67:9:355:17,67:673,2688:-244.94,-192.263,-216.35,-26.1834,0,-35.219 dDocent_Contig_1924 154 . C A 39.5477 . AB=0.133333;ABP=38.0434;AC=1;AF=0.166667;AN=6;AO=4;CIGAR=1X;DP=62;DPB=62;DPRA=1.875;EPP=11.6962;EPPR=128.956;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=157;QR=2235;RO=58;RPL=0;RPP=11.6962;RPPR=128.956;RPR=4;RUN=1;SAF=0;SAP=11.6962;SAR=4;SRF=0;SRP=128.956;SRR=58;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:30:26,4:26:1018:4:157:-5.4776,0,-82.8754 0/0:22:22,0:22:824:0:0:0,-6.62266,-74.4595 0/0:10:10,0:10:393:0:0:0,-3.0103,-35.7246 dDocent_Contig_1925 31 . G A 3576.41 . AB=0.648045;ABP=37.0866;AC=3;AF=0.5;AN=6;AO=116;CIGAR=1X;DP=179;DPB=179;DPRA=0;EPP=254.901;EPPR=139.813;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=1.38778e-17;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=4626;QR=2461;RO=63;RPL=0;RPP=254.901;RPPR=139.813;RPR=116;RUN=1;SAF=116;SAP=254.901;SAR=0;SRF=63;SRP=139.813;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:134:52,82:52:2045:82:3265:-253.566,0,-143.916 0/1:18:6,12:6:226:12:478:-37.9514,0,-15.2762 0/1:27:5,22:5:190:22:883:-71.6465,0,-9.33495 dDocent_Contig_1926 41 . C T 568.434 . AB=0.392857;ABP=8.59409;AC=3;AF=0.5;AN=6;AO=22;CIGAR=1X2M1X;DP=56;DPB=56;DPRA=0;EPP=50.7827;EPPR=76.8404;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=868;QR=1309;RO=34;RPL=0;RPP=50.7827;RPPR=76.8404;RPR=22;RUN=1;SAF=22;SAP=50.7827;SAR=0;SRF=34;SRP=76.8404;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|1:23:13,10:13:512:10:394:-28.8946,0,-39.5044 0|1:14:10,4:10:369:4:157:-10.2944,0,-29.3379 0|1:19:11,8:11:428:8:317:-23.1774,0,-33.1535 dDocent_Contig_1928 10 . A G 1734.39 . AB=0.30315;ABP=88.5013;AC=3;AF=0.5;AN=6;AO=77;CIGAR=1X;DP=254;DPB=254;DPRA=0;EPP=170.214;EPPR=385.189;GTI=0;LEN=1;MEANALT=1.33333;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=2829;QR=6604;RO=176;RPL=0;RPP=170.214;RPPR=385.189;RPR=77;RUN=1;SAF=77;SAP=170.214;SAR=0;SRF=176;SRP=385.189;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:169:119,49:119:4461:49:1813:-112.455,0,-350.573 0/1:24:16,8:16:606:8:301:-20.2181,0,-47.643 0/1:61:41,20:41:1537:20:715:-46.2888,0,-120.221 dDocent_Contig_1929 20 . G A 2276.7 . AB=0.274336;ABP=152.957;AC=3;AF=0.5;AN=6;AO=93;CIGAR=1X;DP=339;DPB=339;DPRA=0;EPP=204.957;EPPR=537.193;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=3716;QR=9674;RO=246;RPL=0;RPP=204.957;RPPR=537.193;RPR=93;RUN=1;SAF=93;SAP=204.957;SAR=0;SRF=246;SRP=537.193;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:232:163,69:163:6409:69:2780:-180.465,0,-506.723 0/1:41:33,8:33:1263:8:321:-16.9146,0,-101.6 0/1:66:50,16:50:2002:16:615:-35.8125,0,-160.506 dDocent_Contig_1930 59 . C A 323.901 . AB=0.137339;ABP=269.188;AC=3;AF=0.5;AN=6;AO=32;CIGAR=1X;DP=233;DPB=233;DPRA=0;EPP=72.4974;EPPR=439.476;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=59.8458;NS=3;NUMALT=1;ODDS=1.38778e-17;PAIRED=1;PAIREDR=0.995025;PAO=0;PQA=0;PQR=0;PRO=0;QA=1189;QR=7592;RO=201;RPL=32;RPP=72.4974;RPPR=439.476;RPR=0;RUN=1;SAF=32;SAP=72.4974;SAR=0;SRF=201;SRP=439.476;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:117:104,13:104:3941:13:490:-9.22199,0,-319.554 0/1:51:45,6:45:1750:6:223:-5.07546,0,-142.398 0/1:65:52,13:52:1901:13:476:-23.6154,0,-151.791 dDocent_Contig_1932 33 . T C 45.9742 . AB=0.104762;ABP=145.48;AC=2;AF=0.333333;AN=6;AO=12;CIGAR=1X;DP=135;DPB=135;DPRA=0;EPP=29.068;EPPR=270.101;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=468;QR=4871;RO=123;RPL=0;RPP=29.068;RPPR=270.101;RPR=12;RUN=1;SAF=12;SAP=29.068;SAR=0;SRF=123;SRP=270.101;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:38:34,4:34:1360:4:157:-3.06929,0,-111.215 0/1:67:60,7:60:2368:7:276:-5.0387,0,-193.114 0/0:30:29,1:29:1143:1:35:0,-5.53227,-99.6568 dDocent_Contig_1933 9 . A G 972.132 . AB=0.338346;ABP=33.1987;AC=2;AF=0.333333;AN=6;AO=46;CIGAR=1X;DP=149;DPB=149;DPRA=0;EPP=102.898;EPPR=224.5;GTI=0;LEN=1;MEANALT=1.33333;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=1587;QR=3604;RO=102;RPL=0;RPP=102.898;RPPR=224.5;RPR=46;RUN=1;SAF=46;SAP=102.898;SAR=0;SRF=102;SRP=224.5;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:94:68,25:68:2394:25:863:-49.8007,0,-187.51 0/0:16:15,1:15:558:1:31:0,-1.71703,-47.4589 0/1:39:19,20:19:652:20:693:-50.9354,0,-47.245 dDocent_Contig_1934 157 . A G 40.2327 . AB=0.108434;ABP=113.546;AC=2;AF=0.333333;AN=6;AO=9;CIGAR=1X;DP=108;DPB=108;DPRA=1.66;EPP=22.5536;EPPR=217.986;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=349;QR=3787;RO=99;RPL=0;RPP=22.5536;RPPR=217.986;RPR=9;RUN=1;SAF=0;SAP=22.5536;SAR=9;SRF=0;SRP=217.986;SRR=99;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:67:61,6:61:2328:6:235:-1.35211,0,-189.549 0/1:16:13,3:13:492:3:114:-5.81574,0,-39.8059 0/0:25:25,0:25:967:0:0:0,-7.52575,-87.3373 dDocent_Contig_1936 12 . T C 3906 . AB=0.383562;ABP=28.8003;AC=3;AF=0.5;AN=6;AO=84;CIGAR=1M1X4M;DP=219;DPB=286.333;DPRA=0;EPP=185.414;EPPR=76.8404;GTI=0;LEN=1;MEANALT=3;MQM=59.9762;MQMR=60;NS=3;NUMALT=3;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=3363;QR=1318;RO=34;RPL=0;RPP=185.414;RPPR=76.8404;RPR=84;RUN=1;SAF=84;SAP=185.414;SAR=0;SRF=34;SRP=76.8404;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|1:95:18,26,11,40:18:703:26,11,40:1025,427,1591:-152.113,-73.2011,-123.164,-122.452,-95.9109,-176.93,-26.5426,0,-49.2528,-72.2921 0|1:81:11,32,15,22:11:427:32,15,22:1236,595,882:-135.772,-37.5879,-63.0367,-90.1027,-23.6894,-120.671,-66.4144,0,-52.5157,-94.8756 0|1:43:5,16,0,22:5:188:16,0,22:629,0,890:-108.237,-58.0075,-68.5874,-109.742,-73.4039,-125.141,-36.3546,0,-51.7522,-45.1296 dDocent_Contig_1938 19 . C T 79.0033 . AB=0.146341;ABP=47.552;AC=1;AF=0.166667;AN=6;AO=6;CIGAR=1X;DP=112;DPB=112;DPRA=1.15493;EPP=16.0391;EPPR=233.186;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=241;QR=4217;RO=106;RPL=0;RPP=16.0391;RPPR=233.186;RPR=6;RUN=1;SAF=6;SAP=16.0391;SAR=0;SRF=106;SRP=233.186;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:44:44,0:44:1772:0:0:0,-13.2453,-159.694 0/1:41:35,6:35:1396:6:241:-9.72424,0,-113.556 0/0:27:27,0:27:1049:0:0:0,-8.12781,-94.6995 dDocent_Contig_1939 143 . A T 160.612 . AB=0.217391;ABP=34.9215;AC=2;AF=0.333333;AN=6;AO=11;CIGAR=1X;DP=63;DPB=63;DPRA=0;EPP=26.8965;EPPR=115.927;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=394;QR=1857;RO=52;RPL=0;RPP=26.8965;RPPR=115.927;RPR=11;RUN=1;SAF=0;SAP=26.8965;SAR=11;SRF=0;SRP=115.927;SRR=52;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:29:21,8:21:752:8:288:-17.5375,0,-59.2767 0/1:17:15,2:15:529:2:70:-1.52982,0,-42.8239 0/0:17:16,1:16:576:1:36:0,-1.51923,-48.5766 dDocent_Contig_1940 7 . C G 1514.87 . AB=0.325991;ABP=62.7114;AC=3;AF=0.5;AN=6;AO=74;CIGAR=1X;DP=227;DPB=227;DPRA=0;EPP=163.699;EPPR=333.074;GTI=0;LEN=1;MEANALT=1.33333;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=2492;QR=5864;RO=152;RPL=0;RPP=163.699;RPPR=333.074;RPR=74;RUN=1;SAF=74;SAP=163.699;SAR=0;SRF=152;SRP=333.074;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:105:79,26:79:3053:26:861:-46.1736,0,-243.316 0/1:61:32,28:32:1236:28:942:-66.8819,0,-93.3529 0/1:61:41,20:41:1575:20:689:-43.9539,0,-123.657 dDocent_Contig_1941 19 . T A 93.7367 . AB=0.132353;ABP=82.8438;AC=2;AF=0.333333;AN=6;AO=9;CIGAR=1X;DP=130;DPB=130;DPRA=0.548387;EPP=22.5536;EPPR=265.758;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=362;QR=4877;RO=121;RPL=0;RPP=22.5536;RPPR=265.758;RPR=9;RUN=1;SAF=9;SAP=22.5536;SAR=0;SRF=121;SRP=265.758;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:62:62,0:62:2497:0:0:0,-18.6639,-224.864 0/1:40:34,6:34:1373:6:241:-10.0255,0,-111.782 0/1:28:25,3:25:1007:3:121:-2.85115,0,-82.4926 dDocent_Contig_1942 41 . A G 778.967 . AB=0.472222;ABP=3.25157;AC=4;AF=0.666667;AN=6;AO=26;CIGAR=1X;DP=45;DPB=45;DPRA=0;EPP=59.4686;EPPR=44.2683;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=1013;QR=709;RO=19;RPL=0;RPP=59.4686;RPPR=44.2683;RPR=26;RUN=1;SAF=26;SAP=59.4686;SAR=0;SRF=19;SRP=44.2683;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 1/1:9:0,9:0:0:9:351:-31.9515,-2.70927,0 0/1:21:12,9:12:442:9:348:-25.358,0,-33.7988 0/1:15:7,8:7:267:8:314:-24.11,0,-19.8743 dDocent_Contig_1946 7 . A G 1541.29 . AB=0.754098;ABP=37.2199;AC=4;AF=0.666667;AN=6;AO=59;CIGAR=1X;DP=74;DPB=74;DPRA=0;EPP=131.127;EPPR=31.2394;GTI=0;LEN=1;MEANALT=1.66667;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=1944;QR=506;RO=13;RPL=0;RPP=131.127;RPPR=31.2394;RPR=59;RUN=1;SAF=59;SAP=131.127;SAR=0;SRF=13;SRP=31.2394;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:41:7,33:7:272:33:1075:-84.6591,0,-12.4776 1/1:13:0,13:0:0:13:428:-38.8295,-3.91339,0 0/1:20:6,13:6:234:13:441:-34.1637,0,-15.5616 dDocent_Contig_1948 80 . A C 1570.64 . AB=0.712644;ABP=37.1798;AC=3;AF=0.5;AN=6;AO=62;CIGAR=1X;DP=87;DPB=87;DPRA=0;EPP=137.642;EPPR=57.2971;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=2087;QR=816;RO=25;RPL=62;RPP=137.642;RPPR=57.2971;RPR=0;RUN=1;SAF=62;SAP=137.642;SAR=0;SRF=25;SRP=57.2971;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:31:11,20:11:377:20:663:-50.6505,0,-24.9287 0/1:27:6,21:6:197:21:715:-56.5406,0,-9.92437 0/1:29:8,21:8:242:21:709:-55.396,0,-13.3457 dDocent_Contig_1950 31 . T C 723.263 . AB=0.166008;ABP=248.146;AC=2;AF=0.333333;AN=6;AO=43;CIGAR=1X;DP=295;DPB=295;DPRA=0;EPP=96.3836;EPPR=550.221;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=1719;QR=9989;RO=252;RPL=0;RPP=96.3836;RPPR=550.221;RPR=43;RUN=1;SAF=43;SAP=96.3836;SAR=0;SRF=252;SRP=550.221;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:170:137,33:137:5446:33:1319:-67.8001,0,-438.81 0/0:42:41,1:41:1616:1:37:0,-8.94543,-141.977 0/1:83:74,9:74:2927:9:363:-8.04917,0,-238.54 dDocent_Contig_1951 16 . G T 1555.98 . AB=0.639535;ABP=17.5541;AC=3;AF=0.5;AN=6;AO=55;CIGAR=1X;DP=86;DPB=86;DPRA=0;EPP=122.441;EPPR=70.3259;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=2067;QR=1230;RO=31;RPL=0;RPP=122.441;RPPR=70.3259;RPR=55;RUN=1;SAF=55;SAP=122.441;SAR=0;SRF=31;SRP=70.3259;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:61:20,41:20:787:41:1544:-120.865,0,-52.7849 0/1:14:8,6:8:320:6:218:-15.757,0,-24.9533 0/1:11:3,8:3:123:8:305:-24.4987,0,-8.15346 dDocent_Contig_1952 88 . C T 655.525 . AB=0.15736;ABP=404.788;AC=3;AF=0.5;AN=6;AO=62;CIGAR=1X;DP=394;DPB=394;DPRA=0;EPP=137.642;EPPR=723.939;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=2097;QR=11096;RO=332;RPL=62;RPP=137.642;RPPR=723.939;RPR=0;RUN=1;SAF=62;SAP=137.642;SAR=0;SRF=332;SRP=723.939;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:220:188,32:188:6358:32:1081:-31.3673,0,-506.135 0/1:54:39,15:39:1307:15:509:-29.8786,0,-101.671 0/1:120:105,15:105:3431:15:507:-9.82948,0,-272.896 dDocent_Contig_1953 106 . N G 60.6611 . AB=0;ABP=0;AC=2;AF=1;AN=2;AO=3;CIGAR=2X;DP=3;DPB=3;DPRA=0;EPP=9.52472;EPPR=0;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=0;NS=1;NUMALT=1;ODDS=6.68461;PAIRED=1;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=65;QR=0;RO=0;RPL=0;RPP=9.52472;RPPR=0;RPR=3;RUN=1;SAF=0;SAP=9.52472;SAR=3;SRF=0;SRP=0;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL .:.:.:.:.:.:.:. .:.:.:.:.:.:.:. 1|1:3:0,3:0:0:3:65:-6.06557,-0.90309,0 dDocent_Contig_1954 66 . A T 1650.64 . AB=0.0833333;ABP=57.2971;AC=0;AF=0;AN=6;AO=3;CIGAR=1M2D1X2M1X2M2X2M1X3M1X1M1X;DP=108;DPB=114.8;DPRA=0;EPP=9.52472;EPPR=74.6689;GTI=0;LEN=1;MEANALT=4;MQM=60;MQMR=60;NS=3;NUMALT=2;ODDS=0;PAIRED=0;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=114;QR=1041;RO=33;RPL=3;RPP=9.52472;RPPR=74.6689;RPR=0;RUN=1;SAF=0;SAP=9.52472;SAR=3;SRF=33;SRP=74.6689;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|0:57:15,0,41:15:484:0,41:0,1322:-102.345,-106.861,-145.896,0,-39.2803,-26.9381 0|0:36:12,3,19:12:367:3,19:114,626:-46.9784,-41.2354,-69.7355,0,-20.0203,-23.6627 0|0:15:6,0,9:6:190:0,9:0,283:-21.2631,-23.0693,-38.3605,0,-15.6069,-12.8976 dDocent_Contig_1955 42 . G C 53.572 . AB=0.230769;ABP=11.1951;AC=1;AF=0.166667;AN=6;AO=3;CIGAR=1X;DP=59;DPB=59;DPRA=0.565217;EPP=9.52472;EPPR=124.613;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=119;QR=2231;RO=56;RPL=0;RPP=9.52472;RPPR=124.613;RPR=3;RUN=1;SAF=3;SAP=9.52472;SAR=0;SRF=56;SRP=124.613;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:35:35,0:35:1401:0:0:0,-10.536,-126.345 0/1:13:10,3:10:407:3:119:-7.18111,0,-33.0772 0/0:11:11,0:11:423:0:0:0,-3.31133,-38.4132 dDocent_Contig_1956 16 . C T 102.097 . AB=0;ABP=0;AC=2;AF=1;AN=2;AO=3;CIGAR=1X;DP=3;DPB=3;DPRA=0;EPP=9.52472;EPPR=0;GTI=0;LEN=1;MEANALT=1;MQM=40;MQMR=0;NS=1;NUMALT=1;ODDS=6.68461;PAIRED=1;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=117;QR=0;RO=0;RPL=0;RPP=9.52472;RPPR=0;RPR=3;RUN=1;SAF=3;SAP=9.52472;SAR=0;SRF=0;SRP=0;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL ./.:.:.:.:.:.:.:. ./.:.:.:.:.:.:.:. 1/1:3:0,3:0:0:3:117:-10.2091,-0.90309,0 dDocent_Contig_1957 22 . A G 167.476 . AB=0.175439;ABP=55.1637;AC=2;AF=0.333333;AN=6;AO=11;CIGAR=1X5M;DP=87;DPB=87;DPRA=0;EPP=26.8965;EPPR=161.528;GTI=0;LEN=1;MEANALT=1.33333;MQM=60;MQMR=60;NS=3;NUMALT=2;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=442;QR=2846;RO=73;RPL=0;RPP=26.8965;RPPR=161.528;RPR=11;RUN=1;SAF=11;SAP=26.8965;SAR=0;SRF=73;SRP=161.528;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|1:31:25,3,3:25:956:3,3:111,121:-2.46562,-0.959045,-78.4747,0,-69.4013,-77.5462 0|0:30:29,0,1:29:1146:0,1:0,41:0,-8.72987,-103.022,-4.93633,-99.6371,-99.336 0|1:26:19,0,7:19:744:0,7:0,280:-17.7439,-23.4634,-84.6343,0,-61.5681,-59.4609 dDocent_Contig_1958 15 . T G 127.957 . AB=0.5;ABP=3.0103;AC=1;AF=0.166667;AN=6;AO=6;CIGAR=1X1M1X;DP=45;DPB=45;DPRA=0.727273;EPP=3.0103;EPPR=87.6977;GTI=0;LEN=1;MEANALT=1;MQM=38.1667;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=0;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=223;QR=1537;RO=39;RPL=0;RPP=16.0391;RPPR=87.6977;RPR=6;RUN=1;SAF=3;SAP=3.0103;SAR=3;SRF=39;SRP=87.6977;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|0:10:10,0:10:390:0:0:0,-3.0103,-35.4564 0|1:12:6,6:6:240:6:223:-14.6196,0,-18.3628 0|0:23:23,0:23:907:0:0:0,-6.92369,-81.9393 dDocent_Contig_1959 214 . G A 444.09 . AB=0.191176;ABP=115.671;AC=3;AF=0.5;AN=6;AO=26;CIGAR=1X;DP=136;DPB=136;DPRA=0;EPP=59.4686;EPPR=241.872;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=6.93889e-18;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=985;QR=4170;RO=110;RPL=26;RPP=59.4686;RPPR=241.872;RPR=0;RUN=1;SAF=0;SAP=59.4686;SAR=26;SRF=0;SRP=241.872;SRR=110;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:67:49,18:49:1838:18:683:-41.6322,0,-145.495 0/1:42:38,4:38:1455:4:146:-0.853316,0,-118.587 0/1:27:23,4:23:877:4:156:-6.28948,0,-71.1197 dDocent_Contig_1960 183 . T C 69.6438 . AB=0.11194;ABP=178.284;AC=3;AF=0.5;AN=6;AO=15;CIGAR=1X;DP=134;DPB=134;DPRA=0;EPP=35.5824;EPPR=261.416;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=6.93889e-18;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=558;QR=4690;RO=119;RPL=15;RPP=35.5824;RPPR=261.416;RPR=0;RUN=1;SAF=0;SAP=35.5824;SAR=15;SRF=0;SRP=261.416;SRR=119;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:59:51,8:51:2045:8:282:-7.94899,0,-166.478 0/1:36:33,3:33:1292:3:122:-0.535413,0,-105.704 0/1:39:35,4:35:1353:4:154:-2.48925,0,-110.288 dDocent_Contig_1962 110 . A G 245.027 . AB=0.307692;ABP=15.538;AC=1;AF=0.166667;AN=6;AO=12;CIGAR=1X4M;DP=120;DPB=120;DPRA=0.962963;EPP=29.068;EPPR=211.472;GTI=0;LEN=1;MEANALT=2;MQM=60;MQMR=60;NS=3;NUMALT=2;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=403;QR=3161;RO=96;RPL=0;RPP=29.068;RPPR=211.472;RPR=12;RUN=1;SAF=0;SAP=29.068;SAR=12;SRF=0;SRP=211.472;SRR=96;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|0:61:57,3,0:57:1892:3,0:87,0:0,-10.2781,-162.427,-17.1587,-163.33,-170.254 0|0:20:18,2,0:18:586:2,0:61,0:0,-0.22658,-47.257,-5.41854,-47.859,-52.744 0|1:39:21,6,12:21:683:6,12:200,403:-26.3258,-16.4596,-69.7774,0,-38.934,-51.512 dDocent_Contig_1963 18 . T C 2344.19 . AB=0.79798;ABP=79.3628;AC=3;AF=0.5;AN=6;AO=79;CIGAR=1X;DP=99;DPB=99;DPRA=0;EPP=174.557;EPPR=46.4397;GTI=0;LEN=1;MEANALT=1;MQM=54.2911;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=3133;QR=797;RO=20;RPL=0;RPP=174.557;RPPR=46.4397;RPR=79;RUN=1;SAF=79;SAP=174.557;SAR=0;SRF=20;SRP=46.4397;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:47:10,37:10:402:37:1458:-104.454,0,-22.3916 0/1:16:7,9:7:277:9:362:-28.1279,0,-20.4829 0/1:36:3,33:3:118:33:1313:-105.524,0,-0.165427 dDocent_Contig_1964 20 . G A 68.7364 . AB=0.210526;ABP=16.8392;AC=1;AF=0.166667;AN=6;AO=4;CIGAR=2X;DP=59;DPB=59;DPRA=0.95;EPP=11.6962;EPPR=122.441;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=1.73472e-18;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=156;QR=2124;RO=55;RPL=0;RPP=11.6962;RPPR=122.441;RPR=4;RUN=1;SAF=4;SAP=11.6962;SAR=0;SRF=55;SRP=122.441;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|0:28:28,0:28:1081:0:0:0,-8.42884,-97.592 0|0:12:12,0:12:462:0:0:0,-3.61236,-41.9302 0|1:19:15,4:15:581:4:156:-8.69755,0,-46.9101 dDocent_Contig_1965 168 . A C 70.3374 . AB=0.25;ABP=11.6962;AC=2;AF=0.333333;AN=6;AO=5;CIGAR=1X;DP=50;DPB=50;DPRA=0;EPP=13.8677;EPPR=100.727;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=1.73472e-18;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=201;QR=1761;RO=45;RPL=5;RPP=13.8677;RPPR=100.727;RPR=0;RUN=1;SAF=0;SAP=13.8677;SAR=5;SRF=0;SRP=100.727;SRR=45;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:34:33,1:33:1314:1:40:0,-6.23934,-114.522 0/1:10:7,3:7:282:3:122:-8.36219,0,-22.7425 0/1:6:5,1:5:165:1:39:-2.09038,0,-13.3588 dDocent_Contig_1966 58 . T C 1157.58 . AB=0.392857;ABP=14.1779;AC=3;AF=0.5;AN=6;AO=44;CIGAR=1X;DP=112;DPB=112;DPRA=0;EPP=98.5551;EPPR=150.67;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=1711;QR=2699;RO=68;RPL=44;RPP=98.5551;RPPR=150.67;RPR=0;RUN=1;SAF=44;SAP=98.5551;SAR=0;SRF=68;SRP=150.67;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:60:32,28:32:1293:28:1083:-79.6873,0,-98.5709 0/1:14:6,8:6:236:8:312:-24.2276,0,-17.3969 0/1:38:30,8:30:1170:8:316:-17.3656,0,-94.1393 dDocent_Contig_1968 13 . G A 198.515 . AB=0.272727;ABP=17.8158;AC=1;AF=0.166667;AN=6;AO=12;CIGAR=1X2M1X2M3I2M;DP=96;DPB=100.5;DPRA=0;EPP=29.068;EPPR=174.557;GTI=0;LEN=1;MEANALT=2.33333;MQM=60;MQMR=60;NS=3;NUMALT=2;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=462;QR=3079;RO=79;RPL=0;RPP=29.068;RPPR=174.557;RPR=12;RUN=1;SAF=12;SAP=29.068;SAR=0;SRF=79;SRP=174.557;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|0:30:27,1,1:27:1066:1,1:40,39:0,-4.79115,-92.3179,-4.88531,-89.4129,-92.4074 0|0:33:30,2,1:30:1164:2,1:77,40:0,-2.71873,-97.7374,-5.73085,-95.0439,-101.065 0|1:33:22,9,2:22:849:9,2:345,80:-21.6754,0,-66.998,-21.7049,-63.116,-90.8248 dDocent_Contig_1969 9 . T C 63.8895 . AB=0.2;ABP=18.6449;AC=1;AF=0.166667;AN=6;AO=4;CIGAR=1X;DP=85;DPB=85;DPRA=0.615385;EPP=11.6962;EPPR=178.9;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=0;PAIREDR=0.432099;PAO=0;PQA=0;PQR=0;PRO=0;QA=154;QR=2633;RO=81;RPL=0;RPP=11.6962;RPPR=178.9;RPR=4;RUN=1;SAF=4;SAP=11.6962;SAR=0;SRF=81;SRP=178.9;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:49:49,0:49:1556:0:0:0,-14.7505,-140.299 0/1:20:16,4:16:548:4:154:-8.21286,0,-43.6158 0/0:16:16,0:16:529:0:0:0,-4.81648,-47.9175 dDocent_Contig_1970 12 . A T 1474.08 . AB=0.197561;ABP=328.752;AC=3;AF=0.5;AN=6;AO=81;CIGAR=1X;DP=410;DPB=410;DPRA=0;EPP=178.9;EPPR=717.425;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=3050;QR=12384;RO=329;RPL=0;RPP=178.9;RPPR=717.425;RPR=81;RUN=1;SAF=81;SAP=178.9;SAR=0;SRF=329;SRP=717.425;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:209:161,48:161:6059:48:1789:-98.3376,0,-482.32 0/1:111:86,25:86:3238:25:952:-52.5762,0,-258.144 0/1:90:82,8:82:3087:8:309:-1.07977,0,-250.881 dDocent_Contig_1971 17 . A T 70.4917 . AB=0.152174;ABP=51.3492;AC=2;AF=0.333333;AN=6;AO=7;CIGAR=1X;DP=53;DPB=53;DPRA=3.28571;EPP=18.2106;EPPR=102.898;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=263;QR=1831;RO=46;RPL=0;RPP=18.2106;RPPR=102.898;RPR=7;RUN=1;SAF=7;SAP=18.2106;SAR=0;SRF=46;SRP=102.898;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:32:27,5:27:1075:5:186:-7.46583,0,-87.4063 0/0:7:7,0:7:275:0:0:0,-2.10721,-25.1181 0/1:14:12,2:12:481:2:77:-3.09472,0,-39.4269 dDocent_Contig_1972 80 . G T 65.8091 . AB=0.235294;ABP=13.3567;AC=1;AF=0.166667;AN=6;AO=4;CIGAR=1X;DP=63;DPB=63;DPRA=0.73913;EPP=11.6962;EPPR=131.127;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=0.983051;PAO=0;PQA=0;PQR=0;PRO=0;QA=143;QR=2086;RO=59;RPL=4;RPP=11.6962;RPPR=131.127;RPR=0;RUN=1;SAF=4;SAP=11.6962;SAR=0;SRF=59;SRP=131.127;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:17:13,4:13:450:4:143:-8.10378,0,-35.7108 0/0:8:8,0:8:292:0:0:0,-2.40824,-26.6304 0/0:38:38,0:38:1344:0:0:0,-11.4391,-121.261 dDocent_Contig_1974 31 . T A 195.214 . AB=0.136691;ABP=162.371;AC=3;AF=0.5;AN=6;AO=19;CIGAR=1X;DP=139;DPB=139;DPRA=0;EPP=44.2683;EPPR=263.587;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=731;QR=4811;RO=120;RPL=0;RPP=44.2683;RPPR=263.587;RPR=19;RUN=1;SAF=19;SAP=44.2683;SAR=0;SRF=120;SRP=263.587;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:77:69,8:69:2759:8:289:-3.16094,0,-225.24 0/1:31:25,6:25:1005:6:240:-12.6435,0,-81.4111 0/1:31:26,5:26:1047:5:202:-9.22994,0,-85.1867 dDocent_Contig_1975 8 . G C 320.768 . AB=0.347826;ABP=12.2627;AC=2;AF=0.333333;AN=6;AO=17;CIGAR=1X;DP=85;DPB=85;DPRA=0;EPP=39.9253;EPPR=150.67;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=3.46945e-18;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=575;QR=2371;RO=68;RPL=0;RPP=39.9253;RPPR=150.67;RPR=17;RUN=1;SAF=17;SAP=39.9253;SAR=0;SRF=68;SRP=150.67;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:39:38,1:38:1325:1:39:0,-7.84361,-115.631 0/1:20:18,2:18:612:2:76:-1.19407,0,-49.3672 0/1:26:12,14:12:434:14:460:-33.8787,0,-31.5703 dDocent_Contig_1977 57 . T C 3946.51 . AB=0.70297;ABP=75.2924;AC=3;AF=0.5;AN=6;AO=142;CIGAR=1X;DP=202;DPB=202;DPRA=0;EPP=311.359;EPPR=128.956;GTI=0;LEN=1;MEANALT=1.66667;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=1.38778e-17;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=5113;QR=2072;RO=58;RPL=142;RPP=311.359;RPPR=128.956;RPR=0;RUN=1;SAF=142;SAP=311.359;SAR=0;SRF=58;SRP=128.956;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:113:31,81:31:1118:81:2955:-232.189,0,-66.9481 0/1:27:12,14:12:440:14:483:-35.6106,0,-31.7574 0/1:62:15,47:15:514:47:1675:-132.374,0,-27.9177 dDocent_Contig_1978 96 . G A 15234.5 . AB=0.883495;ABP=266.159;AC=5;AF=0.833333;AN=6;AO=534;CIGAR=3X;DP=590;DPB=834;DPRA=0;EPP=1027.77;EPPR=0;GTI=0;LEN=1;MEANALT=3;MQM=49.4813;MQMR=0;NS=3;NUMALT=2;ODDS=0;PAIRED=0.754682;PAIREDR=0;PAO=715;PQA=24481;PQR=128;PRO=5;QA=18036;QR=0;RO=0;RPL=520;RPP=1044.16;RPPR=0;RPR=14;RUN=1;SAF=532;SAP=1145.27;SAR=2;SRF=0;SRP=0;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 1|1:192:0,183,8:0:0:183,8:6230,253:-512.493,-55.0885,0,-492.383,-34.9791,-489.975 1|0:206:0,182,24:0:0:182,24:6073,797:-533.179,-60.8782,-6.09074,-472.299,0,-465.074 1|1:192:0,169,17:0:0:169,17:5733,569:-479.299,-50.8741,0,-437.553,-9.12998,-432.436 dDocent_Contig_1979 9 . G A 762.78 . AB=0;ABP=0;AC=0;AF=0;AN=6;AO=14;CIGAR=2M1X;DP=481;DPB=481;DPRA=0;EPP=18.5208;EPPR=176.734;GTI=0;LEN=1;MEANALT=7;MQM=45.1429;MQMR=35.549;NS=3;NUMALT=4;ODDS=5.55112e-17;PAIRED=0;PAIREDR=0.142857;PAO=0;PQA=0;PQR=0;PRO=0;QA=479;QR=12778;RO=357;RPL=0;RPP=33.4109;RPPR=778.226;RPR=14;RUN=1;SAF=12;SAP=18.5208;SAR=2;SRF=263;SRP=176.734;SRR=94;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|0:112:67,7,26,12,0:67:2268:7,26,12,0:270,957,402,0:-57.3116,-55.3385,-221.518,0,-146.14,-160.456,-45.1719,-191.307,-135.963,-209.836,-77.4806,-223.626,-168.283,-213.448,-245.767 0|0:269:214,0,22,6,14:214:7834:0,22,6,14:0,637,158,479:0,-64.4204,-385.972,-16.1063,-337.667,-331.044,-52.0955,-373.646,-325.341,-371.84,-36.5206,-358.069,-309.764,-345.744,-353.855 0|0:100:76,0,19,3,0:76:2676:0,19,3,0:0,581,38,0:-22.4893,-45.3675,-186.081,0,-140.804,-135.084,-43.1235,-183.819,-138.542,-182.915,-45.3675,-186.081,-140.804,-183.819,-186.081 dDocent_Contig_1980 7 . G A 3630.42 . AB=0.548936;ABP=7.89842;AC=3;AF=0.5;AN=6;AO=129;CIGAR=1X;DP=235;DPB=235;DPRA=0;EPP=283.13;EPPR=224.5;GTI=0;LEN=1;MEANALT=2;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=0.970588;PAO=0;PQA=0;PQR=0;PRO=0;QA=4863;QR=3386;RO=102;RPL=0;RPP=283.13;RPPR=224.5;RPR=129;RUN=1;SAF=129;SAP=283.13;SAR=0;SRF=102;SRP=224.5;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:124:44,79:44:1414:79:2978:-231.05,0,-90.3725 0/1:48:26,21:26:872:21:786:-56.795,0,-64.5014 0/1:63:32,29:32:1100:29:1099:-80.72,0,-80.8037 dDocent_Contig_1983 98 . N T 347.19 . AB=0;ABP=0;AC=4;AF=1;AN=4;AO=11;CIGAR=1X;DP=11;DPB=11;DPRA=0;EPP=26.8965;EPPR=0;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=0;NS=2;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=375;QR=0;RO=0;RPL=11;RPP=26.8965;RPPR=0;RPR=0;RUN=1;SAF=11;SAP=26.8965;SAR=0;SRF=0;SRP=0;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL ./.:.:.:.:.:.:.:. 1/1:5:0,5:0:0:5:166:-15.2671,-1.50515,0 1/1:6:0,6:0:0:6:209:-19.1508,-1.80618,0 dDocent_Contig_1984 27 . C A 4374.42 . AB=0.568627;ABP=13.4419;AC=3;AF=0.5;AN=6;AO=145;CIGAR=1X;DP=255;DPB=255;DPRA=0;EPP=309.248;EPPR=241.872;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=5768;QR=4336;RO=110;RPL=0;RPP=317.874;RPPR=241.872;RPR=145;RUN=1;SAF=144;SAP=309.248;SAR=1;SRF=110;SRP=241.872;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:99:47,52:47:1883:52:2061:-155.878,0,-139.873 0/1:105:44,61:44:1722:61:2434:-187.607,0,-123.593 0/1:51:19,32:19:731:32:1273:-99.4797,0,-50.7493 dDocent_Contig_1985 30 . A G 37.4223 . AB=0.125;ABP=61.6401;AC=2;AF=0.333333;AN=6;AO=7;CIGAR=1X;DP=62;DPB=62;DPRA=0;EPP=18.2106;EPPR=122.441;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=0;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=270;QR=2181;RO=55;RPL=0;RPP=18.2106;RPPR=122.441;RPR=7;RUN=1;SAF=7;SAP=18.2106;SAR=0;SRF=55;SRP=122.441;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:30:26,4:26:1037:4:151:-4.92528,0,-84.5942 0/0:14:13,1:13:512:1:38:0,-0.417151,-42.6302 0/1:18:16,2:16:632:2:81:-2.26719,0,-51.794 dDocent_Contig_1986 17 . A G 131.847 . AB=0.181818;ABP=41.702;AC=2;AF=0.333333;AN=6;AO=8;CIGAR=1X;DP=64;DPB=64;DPRA=1.1;EPP=20.3821;EPPR=124.613;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=320;QR=2228;RO=56;RPL=0;RPP=20.3821;RPPR=124.613;RPR=8;RUN=1;SAF=8;SAP=20.3821;SAR=0;SRF=56;SRP=124.613;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:33:30,3:30:1191:3:121:-1.34621,0,-97.5317 0/1:11:6,5:6:242:5:199:-14.9776,0,-18.846 0/0:20:20,0:20:795:0:0:0,-6.0206,-71.8667 dDocent_Contig_1987 7 . G A 1754.08 . AB=0.264368;ABP=86.924;AC=2;AF=0.333333;AN=6;AO=46;CIGAR=1X3M2X2M1X2M1X;DP=174;DPB=174;DPRA=0;EPP=102.898;EPPR=157.185;GTI=0;LEN=1;MEANALT=3.66667;MQM=60;MQMR=60;NS=3;NUMALT=3;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=1805;QR=2646;RO=71;RPL=0;RPP=102.898;RPPR=157.185;RPR=46;RUN=1;SAF=46;SAP=102.898;SAR=0;SRF=71;SRP=157.185;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|1:103:56,30,12,1:56:2076:30,12,1:1189,477,40:-81.0439,0,-160.835,-58.622,-130.586,-224.857,-94.6061,-166.57,-225.174,-264.149 0|0:44:9,5,12,18:9:346:5,12,18:192,465,649:-60.0144,-46.9621,-73.8644,-24.5215,-37.169,-49.3188,-9.79248,-22.4369,0,-32.7776 1|0:27:6,11,8,2:6:224:11,8,2:424,307,80:-39.8727,-6.86522,-21.8871,-16.4838,0,-32.4093,-35.0874,-18.6059,-28.2256,-52.8209 dDocent_Contig_1988 17 . A G 731.292 . AB=0.232877;ABP=93.4982;AC=2;AF=0.333333;AN=6;AO=36;CIGAR=1X;DP=192;DPB=192;DPRA=0;EPP=81.1833;EPPR=339.589;GTI=0;LEN=1;MEANALT=1.33333;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=1415;QR=6203;RO=155;RPL=0;RPP=81.1833;RPPR=339.589;RPR=36;RUN=1;SAF=36;SAP=81.1833;SAR=0;SRF=155;SRP=339.589;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:97:79,17:79:3155:17:669:-31.229,0,-254.712 0/1:49:32,17:32:1271:17:665:-45.4231,0,-99.9116 0/0:46:44,2:44:1777:2:81:0,-6.16165,-152.453 dDocent_Contig_1990 160 . T A 72.1392 . AB=0.2;ABP=18.6449;AC=1;AF=0.166667;AN=6;AO=4;CIGAR=1X;DP=49;DPB=49;DPRA=1.37931;EPP=11.6962;EPPR=100.727;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=1.73472e-18;PAIRED=1;PAIREDR=0.977778;PAO=0;PQA=0;PQR=0;PRO=0;QA=163;QR=1760;RO=45;RPL=4;RPP=11.6962;RPPR=100.727;RPR=0;RUN=1;SAF=0;SAP=11.6962;SAR=4;SRF=0;SRP=100.727;SRR=45;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:17:17,0:17:689:0:0:0,-5.11751,-62.3397 0/1:20:16,4:16:636:4:163:-9.03783,0,-51.5539 0/0:12:12,0:12:435:0:0:0,-3.61236,-39.4833 dDocent_Contig_1991 54 . A G 2154.64 . AB=0.642857;ABP=22.8638;AC=3;AF=0.5;AN=6;AO=72;CIGAR=1X;DP=112;DPB=112;DPRA=0;EPP=159.356;EPPR=89.8692;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=0.930556;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=2820;QR=1517;RO=40;RPL=72;RPP=159.356;RPPR=89.8692;RPR=0;RUN=1;SAF=72;SAP=159.356;SAR=0;SRF=40;SRP=89.8692;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:50:20,30:20:773:30:1173:-90.7983,0,-54.8413 0/1:24:14,10:14:507:10:384:-27.6855,0,-38.7259 0/1:38:6,32:6:237:32:1263:-102.503,0,-10.2642 dDocent_Contig_1993 59 . C G 43.4139 . AB=0.176471;ABP=33.9218;AC=2;AF=0.333333;AN=6;AO=6;CIGAR=1X;DP=87;DPB=87;DPRA=0.320755;EPP=16.0391;EPPR=178.9;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=3.46945e-18;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=194;QR=3084;RO=81;RPL=6;RPP=16.0391;RPPR=178.9;RPR=0;RUN=1;SAF=6;SAP=16.0391;SAR=0;SRF=81;SRP=178.9;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:53:53,0:53:2034:0:0:0,-15.9546,-183.294 0/1:20:17,3:17:645:3:107:-3.95933,0,-52.3619 0/1:14:11,3:11:405:3:87:-3.90152,0,-32.5821 dDocent_Contig_1994 29 . T G 1351.73 . AB=0.532609;ABP=3.86001;AC=3;AF=0.5;AN=6;AO=49;CIGAR=1X;DP=92;DPB=92;DPRA=0;EPP=109.412;EPPR=96.3836;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=0.930233;PAO=0;PQA=0;PQR=0;PRO=0;QA=1860;QR=1687;RO=43;RPL=0;RPP=109.412;RPPR=96.3836;RPR=49;RUN=1;SAF=49;SAP=109.412;SAR=0;SRF=43;SRP=96.3836;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:49:23,26:23:896:26:996:-75.193,0,-66.2009 0/1:19:5,14:5:196:14:526:-41.9574,0,-12.2951 0/1:24:15,9:15:595:9:338:-23.5457,0,-46.6635 dDocent_Contig_1996 7 . G A 68.0043 . AB=0.210526;ABP=16.8392;AC=1;AF=0.166667;AN=6;AO=4;CIGAR=1X;DP=61;DPB=61;DPRA=0.904762;EPP=11.6962;EPPR=124.613;GTI=0;LEN=1;MEANALT=2;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=152;QR=1730;RO=56;RPL=0;RPP=11.6962;RPPR=124.613;RPR=4;RUN=1;SAF=4;SAP=11.6962;SAR=0;SRF=56;SRP=124.613;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:19:14,4:14:383:4:152:-8.3233,0,-29.021 0/0:17:17,0:17:587:0:0:0,-5.11751,-53.1444 0/0:25:25,0:25:760:0:0:0,-7.52575,-68.6724 dDocent_Contig_1997 7 . G A 55.7399 . AB=0.133333;ABP=55.5599;AC=1;AF=0.166667;AN=6;AO=9;CIGAR=1X;DP=102;DPB=102;DPRA=2.5;EPP=22.5536;EPPR=196.271;GTI=0;LEN=1;MEANALT=2;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=6.93889e-18;PAIRED=0;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=340;QR=2838;RO=89;RPL=0;RPP=22.5536;RPPR=196.271;RPR=9;RUN=1;SAF=9;SAP=22.5536;SAR=0;SRF=89;SRP=196.271;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:40:36,3:36:1162:3:116:0,-1.10155,-94.0909 0/0:17:16,0:16:537:0:0:0,-4.81648,-48.4408 0/1:45:37,6:37:1139:6:224:-7.39778,0,-89.7084 dDocent_Contig_1998 18 . T C 97.6352 . AB=0.181818;ABP=32.0291;AC=1;AF=0.166667;AN=6;AO=7;CIGAR=2X;DP=144;DPB=144;DPRA=1.2561;EPP=18.2106;EPPR=300.502;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=276;QR=5466;RO=137;RPL=0;RPP=18.2106;RPPR=300.502;RPR=7;RUN=1;SAF=7;SAP=18.2106;SAR=0;SRF=137;SRP=300.502;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|0:70:69,1:69:2764:1:41:0,-16.9775,-244.777 0|1:33:27,6:27:1086:6:235:-11.5874,0,-88.0955 0|0:41:41,0:41:1616:0:0:0,-12.3422,-145.675 dDocent_Contig_1999 7 . G A 9850.92 . AB=0.622677;ABP=73.3369;AC=3;AF=0.5;AN=6;AO=335;CIGAR=1X;DP=538;DPB=538;DPRA=0;EPP=730.454;EPPR=430.79;GTI=0;LEN=1;MEANALT=1.66667;MQM=59.397;MQMR=59.9797;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=0.969543;PAO=0;PQA=0;PQR=0;PRO=0;QA=12790;QR=6489;RO=197;RPL=0;RPP=730.454;RPPR=430.79;RPR=335;RUN=1;SAF=335;SAP=730.454;SAR=0;SRF=197;SRP=430.79;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:270:92,173:92:2964:173:6641:-517.54,0,-186.959 0/1:103:39,64:39:1353:64:2436:-188.323,0,-91.0398 0/1:165:66,98:66:2172:98:3713:-284.751,0,-146.217 dDocent_Contig_2000 133 . A C 329.446 . AB=0.451613;ABP=3.64073;AC=1;AF=0.166667;AN=6;AO=14;CIGAR=1X;DP=69;DPB=69;DPRA=1.63158;EPP=33.4109;EPPR=122.441;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=483;QR=1867;RO=55;RPL=0;RPP=33.4109;RPPR=122.441;RPR=14;RUN=1;SAF=0;SAP=33.4109;SAR=14;SRF=0;SRP=122.441;SRR=55;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:31:17,14:17:580:14:483:-34.4675,0,-43.1909 0/0:8:8,0:8:269:0:0:0,-2.40824,-24.5376 0/0:30:30,0:30:1018:0:0:0,-9.0309,-91.9273 dDocent_Contig_2001 84 . G A 165.256 . AB=0.28125;ABP=16.3106;AC=2;AF=0.333333;AN=6;AO=9;CIGAR=1X;DP=45;DPB=45;DPRA=1.23077;EPP=22.5536;EPPR=81.1833;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=1.73472e-18;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=322;QR=1247;RO=36;RPL=9;RPP=22.5536;RPPR=81.1833;RPR=0;RUN=1;SAF=9;SAP=22.5536;SAR=0;SRF=36;SRP=81.1833;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:16:13,3:13:451:3:107:-5.16569,0,-36.1053 0/0:13:13,0:13:447:0:0:0,-3.91339,-40.5596 0/1:16:10,6:10:349:6:215:-14.8827,0,-26.9303 dDocent_Contig_2002 7 . G A 5017.13 . AB=0.869231;ABP=156.951;AC=4;AF=0.666667;AN=6;AO=163;CIGAR=1X;DP=185;DPB=185;DPRA=0;EPP=356.96;EPPR=50.7827;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=6193;QR=696;RO=22;RPL=0;RPP=356.96;RPPR=50.7827;RPR=163;RUN=1;SAF=163;SAP=356.96;SAR=0;SRF=22;SRP=50.7827;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:81:10,71:10:316:71:2700:-218.808,0,-4.35811 0/1:49:7,42:7:231:42:1572:-126.995,0,-6.35734 1/1:55:5,50:5:149:50:1921:-159.432,-2.85366,0 dDocent_Contig_2003 57 . C A 1104.68 . AB=0.111111;ABP=38.4777;AC=0;AF=0;AN=6;AO=3;CIGAR=1X2M1X2M;DP=71;DPB=71;DPRA=0;EPP=9.52472;EPPR=48.6112;GTI=0;LEN=1;MEANALT=3;MQM=60;MQMR=60;NS=3;NUMALT=3;ODDS=1.38778e-17;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=120;QR=832;RO=21;RPL=3;RPP=9.52472;RPPR=48.6112;RPR=0;RUN=1;SAF=3;SAP=9.52472;SAR=0;SRF=21;SRP=48.6112;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|0:17:5,0,0,12:5:200:0,0,12:0,0,487:-39.0639,-40.5691,-57.0422,-40.5691,-57.0422,-57.0422,0,-16.8744,-16.8744,-13.262 0|0:27:9,3,7,8:9:360:3,7,8:120,281,314:-23.1101,-15.9338,-44.6875,-2.66271,-22.4351,-30.2135,0,-19.7701,-6.50055,-27.2468 0|0:27:7,0,3,17:7:272:0,3,17:0,119,679:-53.8163,-55.9235,-78.2718,-46.1282,-68.4761,-67.573,0,-22.3454,-12.5473,-17.2279 dDocent_Contig_2004 21 . C A 56.696 . AB=0.111111;ABP=97.59;AC=1;AF=0.166667;AN=6;AO=10;CIGAR=1X;DP=315;DPB=315;DPRA=3.64474;EPP=24.725;EPPR=665.309;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=402;QR=12260;RO=305;RPL=0;RPP=24.725;RPPR=665.309;RPR=10;RUN=1;SAF=10;SAP=24.725;SAR=0;SRF=305;SRP=665.309;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:205:203,2:203:8150:2:82:0,-53.9315,-725.238 0/0:38:38,0:38:1525:0:0:0,-11.4391,-137.493 0/1:72:64,8:64:2585:8:320:-7.49351,0,-211.097 dDocent_Contig_2005 79 . A G 76.5666 . AB=0.170213;ABP=47.41;AC=3;AF=0.5;AN=6;AO=8;CIGAR=1X1M1X;DP=47;DPB=47;DPRA=0;EPP=20.3821;EPPR=81.1833;GTI=0;LEN=1;MEANALT=1.66667;MQM=60;MQMR=60;NS=3;NUMALT=2;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=279;QR=1228;RO=36;RPL=8;RPP=20.3821;RPPR=81.1833;RPR=0;RUN=1;SAF=8;SAP=20.3821;SAR=0;SRF=36;SRP=81.1833;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|1:8:6,1,0:6:209:1,0:35,0:-1.03657,0,-16.6857,-2.84275,-16.9867,-19.8344 0|1:19:13,4,2:13:431:4,2:139,70:-7.38615,0,-33.6435,-5.60323,-29.1497,-39.8526 0|1:20:17,3,0:17:588:3,0:105,0:-3.77556,0,-47.2259,-8.89307,-48.1289,-56.6728 dDocent_Contig_2006 7 . G A 749.963 . AB=0.130435;ABP=30.2953;AC=0;AF=0;AN=6;AO=3;CIGAR=1X3M1X;DP=60;DPB=60;DPRA=0;EPP=9.52472;EPPR=52.9542;GTI=0;LEN=1;MEANALT=3;MQM=60;MQMR=60;NS=3;NUMALT=3;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=101;QR=838;RO=23;RPL=0;RPP=9.52472;RPPR=52.9542;RPR=3;RUN=1;SAF=3;SAP=9.52472;SAR=0;SRF=23;SRP=52.9542;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|0:23:9,3,4,7:9:328:3,4,7:101,147,277:-20.1068,-14.6459,-40.524,-10.8019,-29.4121,-36.3821,0,-18.6211,-14.7767,-24.6891 0|0:27:7,0,0,18:7:254:0,0,18:0,0,705:-56.0138,-58.121,-78.8562,-58.121,-78.8562,-78.8562,0,-20.8529,-20.8529,-15.4343 0|0:10:7,0,0,2:7:256:0,0,2:0,0,77:-4.398,-6.50521,-27.4727,-6.50521,-27.4727,-27.4727,0,-21.1404,-21.1404,-20.5383 dDocent_Contig_2007 8 . G A 887.102 . AB=0.383838;ABP=14.6134;AC=3;AF=0.5;AN=6;AO=38;CIGAR=1X;DP=99;DPB=99;DPRA=0;EPP=85.5263;EPPR=135.47;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=1367;QR=2105;RO=61;RPL=0;RPP=85.5263;RPPR=135.47;RPR=38;RUN=1;SAF=38;SAP=85.5263;SAR=0;SRF=61;SRP=135.47;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:50:32,18:32:1130:18:647:-43.5039,0,-86.9406 0/1:24:15,9:15:546:9:319:-21.822,0,-42.2495 0/1:25:14,11:14:429:11:401:-28.9072,0,-31.3748 dDocent_Contig_2008 43 . C A 440.334 . AB=0.404762;ABP=6.31921;AC=2;AF=0.333333;AN=6;AO=17;CIGAR=1X;DP=60;DPB=60;DPRA=1.16667;EPP=39.9253;EPPR=96.3836;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=661;QR=1711;RO=43;RPL=0;RPP=39.9253;RPPR=96.3836;RPR=17;RUN=1;SAF=17;SAP=39.9253;SAR=0;SRF=43;SRP=96.3836;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:24:12,12:12:485:12:473:-35.6944,0,-36.7765 0/1:18:13,5:13:513:5:188:-11.8619,0,-41.097 0/0:18:18,0:18:713:0:0:0,-5.41854,-64.4943 dDocent_Contig_2009 8 . C G 16359.1 . AB=0.075067;ABP=1173.03;AC=0;AF=0;AN=6;AO=56;CIGAR=2X3M1X;DP=746;DPB=746;DPRA=0;EPP=124.613;EPPR=44.2683;GTI=0;LEN=1;MEANALT=7;MQM=60;MQMR=60;NS=3;NUMALT=4;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=2010;QR=734;RO=19;RPL=0;RPP=124.613;RPPR=44.2683;RPR=56;RUN=1;SAF=56;SAP=124.613;SAR=0;SRF=19;SRP=44.2683;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|0:227:5,114,6,83,11:5:196:114,6,83,11:4314,186,2723,396:-555.967,-203.806,-185.61,-542.547,-205.002,-556.86,-337.541,0,-338.737,-328.675,-525.162,-187.615,-526.357,-321.351,-537.97 0|0:338:6,34,30,228,33:6:228:34,30,228,33:1279,1011,7830,1193:-719.932,-616.944,-625.408,-639.831,-553.735,-649.498,-86.0984,0,-22.898,-36.162,-624.367,-538.271,-561.158,-7.42751,-633.131 0|0:181:8,35,6,115,12:8:310:35,6,115,12:1310,169,3566,421:-365.537,-260.655,-275.589,-354.551,-272.732,-378.214,-81.8207,0,-93.9035,-72.6723,-333.689,-251.869,-345.765,-73.0397,-355.547 dDocent_Contig_2010 145 . C T 53.1265 . AB=0.15;ABP=45.5712;AC=1;AF=0.166667;AN=6;AO=8;CIGAR=1X;DP=87;DPB=87;DPRA=2.21875;EPP=20.3821;EPPR=174.557;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=274;QR=2642;RO=79;RPL=0;RPP=20.3821;RPPR=174.557;RPR=8;RUN=1;SAF=0;SAP=20.3821;SAR=8;SRF=0;SRP=174.557;SRR=79;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:40:34,6:34:1134:6:206:-6.83552,0,-90.3213 0/0:16:16,0:16:537:0:0:0,-4.81648,-48.6499 0/0:31:29,2:29:971:2:68:0,-2.87405,-81.2391 dDocent_Contig_2012 86 . A G 84.1138 . AB=0.122807;ABP=143.889;AC=1;AF=0.166667;AN=6;AO=15;CIGAR=1X;DP=227;DPB=227;DPRA=1.72549;EPP=35.5824;EPPR=463.362;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=522;QR=7236;RO=212;RPL=15;RPP=35.5824;RPPR=463.362;RPR=0;RUN=1;SAF=15;SAP=35.5824;SAR=0;SRF=212;SRP=463.362;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:114:100,14:100:3420:14:488:-9.93426,0,-273.71 0/0:62:61,1:61:2055:1:34:0,-15.2649,-181.821 0/0:51:51,0:51:1761:0:0:0,-15.3525,-158.774 dDocent_Contig_2014 1 . N G 113.73 . AB=0;ABP=0;AC=2;AF=1;AN=2;AO=3;CIGAR=1X;DP=3;DPB=3;DPRA=0;EPP=9.52472;EPPR=0;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=0;NS=1;NUMALT=1;ODDS=6.68461;PAIRED=1;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=122;QR=0;RO=0;RPL=0;RPP=9.52472;RPPR=0;RPR=3;RUN=1;SAF=3;SAP=9.52472;SAR=0;SRF=0;SRP=0;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL ./.:.:.:.:.:.:.:. ./.:.:.:.:.:.:.:. 1/1:3:0,3:0:0:3:122:-11.3725,-0.90309,0 dDocent_Contig_2015 98 . N G 117.304 . AB=0;ABP=0;AC=6;AF=1;AN=6;AO=4;CIGAR=1X;DP=4;DPB=4;DPRA=0;EPP=11.6962;EPPR=0;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=0;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=116;QR=0;RO=0;RPL=4;RPP=11.6962;RPPR=0;RPR=0;RUN=1;SAF=4;SAP=11.6962;SAR=0;SRF=0;SRP=0;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 1/1:2:0,2:0:0:2:70:-6.6474,-0.60206,0 1/1:1:0,1:0:0:1:15:-1.49999,-0.30103,0 1/1:1:0,1:0:0:1:31:-3.09945,-0.30103,0 dDocent_Contig_2020 17 . C A 4537.89 . AB=0.643777;ABP=44.8461;AC=3;AF=0.5;AN=6;AO=150;CIGAR=2X;DP=233;DPB=233;DPRA=0;EPP=328.731;EPPR=152.842;GTI=0;LEN=1;MEANALT=2;MQM=59.8733;MQMR=60;NS=3;NUMALT=2;ODDS=0;PAIRED=0.966667;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=5842;QR=2708;RO=69;RPL=0;RPP=328.731;RPPR=152.842;RPR=150;RUN=1;SAF=150;SAP=328.731;SAR=0;SRF=69;SRP=152.842;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|1:127:40,4,83:40:1559:4,83:156,3275:-257.407,-256.625,-383.558,0,-115.315,-103.152 0|1:39:7,3,29:7:280:3,29:118,1117:-89.5966,-81.9964,-104.161,0,-13.3649,-14.3397 0|1:67:22,7,38:22:869:7,38:279,1450:-112.308,-95.9521,-165.357,0,-48.5279,-60.0658 dDocent_Contig_2021 128 . G A 1605.6 . AB=0.659574;ABP=23.801;AC=3;AF=0.5;AN=6;AO=62;CIGAR=1X;DP=94;DPB=94;DPRA=0;EPP=137.642;EPPR=72.4974;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=6.93889e-18;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=2149;QR=1106;RO=32;RPL=0;RPP=137.642;RPPR=72.4974;RPR=62;RUN=1;SAF=0;SAP=137.642;SAR=62;SRF=0;SRP=72.4974;SRR=32;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:52:16,36:16:547:36:1241:-96.3402,0,-33.901 0/1:12:5,7:5:175:7:244:-18.6877,0,-12.4813 0/1:30:11,19:11:384:19:664:-51.0553,0,-25.8647 dDocent_Contig_2022 7 . G T 67.9596 . AB=0.116279;ABP=58.0041;AC=2;AF=0.333334;AN=6;AO=6;CIGAR=1X10M;DP=63;DPB=63;DPRA=0;EPP=16.0391;EPPR=109.412;GTI=0;LEN=1;MEANALT=2.66667;MQM=60;MQMR=60;NS=3;NUMALT=2;ODDS=6.93889e-18;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=226;QR=1819;RO=49;RPL=0;RPP=16.0391;RPPR=109.412;RPR=6;RUN=1;SAF=6;SAP=16.0391;SAR=0;SRF=49;SRP=109.412;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|1:32:23,3,4:23:847:3,4:118,154:-5.74299,-2.96857,-71.3383,0,-59.5931,-68.0733 0|1:11:7,2,1:7:267:2,1:80,33:-4.57526,0,-21.43,-4.00673,-19.3657,-25.6655 0|0:20:19,0,1:19:705:0,1:0,39:0,-5.71957,-63.3832,-2.12404,-60.1764,-59.8754 dDocent_Contig_2024 110 . G C 1859.32 . AB=0.765306;ABP=62.9252;AC=3;AF=0.5;AN=6;AO=75;CIGAR=1X;DP=98;DPB=98;DPRA=0;EPP=165.871;EPPR=52.9542;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=2445;QR=764;RO=23;RPL=0;RPP=165.871;RPPR=52.9542;RPR=75;RUN=1;SAF=0;SAP=165.871;SAR=75;SRF=0;SRP=52.9542;SRR=23;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:24:4,20:4:138:20:637:-50.4043,0,-5.53568 0/1:46:10,36:10:348:36:1179:-92.5564,0,-17.8086 0/1:28:9,19:9:278:19:629:-48.4943,0,-16.8918 dDocent_Contig_2025 40 . C T 226.67 . AB=0.127273;ABP=202.115;AC=3;AF=0.5;AN=6;AO=21;CIGAR=1X;DP=165;DPB=165;DPRA=0;EPP=48.6112;EPPR=315.702;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=0.993056;PAO=0;PQA=0;PQR=0;PRO=0;QA=838;QR=5735;RO=144;RPL=0;RPP=48.6112;RPPR=315.702;RPR=21;RUN=1;SAF=21;SAP=48.6112;SAR=0;SRF=144;SRP=315.702;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:37:31,6:31:1251:6:238:-10.6552,0,-101.72 0/1:83:76,7:76:3009:7:281:-0.676689,0,-245.916 0/1:45:37,8:37:1475:8:319:-15.5279,0,-119.451 dDocent_Contig_2026 16 . A T 745.936 . AB=0.530612;ABP=3.40914;AC=3;AF=0.5;AN=6;AO=26;CIGAR=1X;DP=49;DPB=49;DPRA=0;EPP=59.4686;EPPR=52.9542;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=1042;QR=905;RO=23;RPL=0;RPP=59.4686;RPPR=52.9542;RPR=26;RUN=1;SAF=26;SAP=59.4686;SAR=0;SRF=23;SRP=52.9542;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:12:7,5:7:269:5:200:-14.7676,0,-20.9586 0/1:12:8,4:8:316:4:156:-10.8045,0,-25.1932 0/1:25:8,17:8:320:17:686:-54.5444,0,-21.6416 dDocent_Contig_2027 7 . G A 98.8013 . AB=0.193548;ABP=28.2974;AC=1;AF=0.166667;AN=6;AO=6;CIGAR=1X3M1X;DP=68;DPB=68;DPRA=1.67568;EPP=16.0391;EPPR=135.47;GTI=0;LEN=1;MEANALT=2;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=228;QR=2192;RO=61;RPL=0;RPP=16.0391;RPPR=135.47;RPR=6;RUN=1;SAF=6;SAP=16.0391;SAR=0;SRF=61;SRP=135.47;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|0:30:30,0:30:1083:0:0:0,-9.0309,-97.7657 0|0:7:7,0:7:249:0:0:0,-2.10721,-22.7481 0|1:31:24,6:24:860:6:228:-11.704,0,-68.5589 dDocent_Contig_2028 20 . G T 5744.05 . AB=0.872549;ABP=248.94;AC=3;AF=0.5;AN=6;AO=178;CIGAR=1X;DP=204;DPB=204;DPRA=0;EPP=389.532;EPPR=59.4686;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=7121;QR=1046;RO=26;RPL=0;RPP=389.532;RPPR=59.4686;RPR=178;RUN=1;SAF=178;SAP=389.532;SAR=0;SRF=26;SRP=59.4686;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:116:14,102:14:562:102:4065:-330.901,0,-16.0011 0/1:26:4,22:4:159:22:878:-71.501,0,-6.86405 0/1:62:8,54:8:325:54:2178:-177.525,0,-10.9558 dDocent_Contig_2029 8 . G A 688.695 . AB=0.0833333;ABP=346.827;AC=3;AF=0.5;AN=6;AO=19;CIGAR=1X6M;DP=228;DPB=228;DPRA=0;EPP=44.2683;EPPR=324.388;GTI=0;LEN=1;MEANALT=3.33333;MQM=60;MQMR=60;NS=3;NUMALT=3;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=654;QR=5471;RO=148;RPL=0;RPP=44.2683;RPPR=324.388;RPR=19;RUN=1;SAF=19;SAP=44.2683;SAR=0;SRF=148;SRP=324.388;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|1:91:49,16,14,12:49:1845:16,14,12:587,538,395:-33.2269,0,-146.358,-3.80084,-107.006,-150.766,-16.0682,-119.26,-123.065,-163.62 0|1:69:45,5,15,3:45:1695:5,15,3:187,567,111:-32.937,-31.1708,-168.554,0,-123.586,-134.382,-37.4029,-160.978,-129.817,-175.387 0|1:68:54,0,8,4:54:1931:0,8,4:0,299,148:-8.22855,-24.4842,-181.891,0,-157.411,-155.003,-12.3765,-169.783,-145.303,-168.579 dDocent_Contig_2030 7 . G A 90.6883 . AB=0.176471;ABP=33.9218;AC=1;AF=0.166667;AN=6;AO=6;CIGAR=2X;DP=83;DPB=83;DPRA=1.38776;EPP=16.0391;EPPR=168.042;GTI=0;LEN=1;MEANALT=2;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=229;QR=2515;RO=76;RPL=0;RPP=16.0391;RPPR=168.042;RPR=6;RUN=1;SAF=6;SAP=16.0391;SAR=0;SRF=76;SRP=168.042;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|0:32:32,0:32:1024:0:0:0,-9.63296,-92.4308 0|0:17:17,0:17:606:0:0:0,-5.11751,-54.8642 0|1:34:27,6:27:885:6:229:-10.8927,0,-69.887 dDocent_Contig_2031 47 . C A 3116.85 . AB=0.486726;ABP=3.3562;AC=3;AF=0.5;AN=6;AO=110;CIGAR=1X;DP=226;DPB=226;DPRA=0;EPP=241.872;EPPR=254.901;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=1.38778e-17;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=4272;QR=4643;RO=116;RPL=0;RPP=241.872;RPPR=254.901;RPR=110;RUN=1;SAF=110;SAP=241.872;SAR=0;SRF=116;SRP=254.901;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:110:56,54:56:2243:54:2111:-157.064,0,-168.923 0/1:52:38,14:38:1534:14:559:-35,0,-122.643 0/1:64:22,42:22:866:42:1602:-125.144,0,-58.9829 dDocent_Contig_2033 7 . G T 41.7895 . AB=0.125;ABP=61.6401;AC=1;AF=0.166667;AN=6;AO=7;CIGAR=1X;DP=77;DPB=77;DPRA=1.52632;EPP=18.2106;EPPR=152.842;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=245;QR=2263;RO=69;RPL=0;RPP=18.2106;RPPR=152.842;RPR=7;RUN=1;SAF=7;SAP=18.2106;SAR=0;SRF=69;SRP=152.842;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:48:42,6:42:1361:6:220:-5.70136,0,-108.297 0/0:10:9,1:9:325:1:25:0,-0.510437,-27.0931 0/0:19:18,0:18:577:0:0:0,-5.41854,-51.8427 dDocent_Contig_2034 127 . A C 212.785 . AB=0.342105;ABP=11.239;AC=2;AF=0.333333;AN=6;AO=13;CIGAR=1X;DP=51;DPB=51;DPRA=1.46154;EPP=31.2394;EPPR=85.5263;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=396;QR=1236;RO=38;RPL=0;RPP=31.2394;RPPR=85.5263;RPR=13;RUN=1;SAF=0;SAP=31.2394;SAR=13;SRF=0;SRP=85.5263;SRR=38;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:13:13,0:13:421:0:0:0,-3.91339,-38.2013 0/1:18:14,4:14:447:4:122:-5.86439,0,-35.118 0/1:20:11,9:11:368:9:274:-18.9369,0,-27.4235 dDocent_Contig_2035 76 . G A 7452.46 . AB=0.214623;ABP=302.94;AC=3;AF=0.5;AN=6;AO=91;CIGAR=1X2M1X;DP=424;DPB=424;DPRA=0;EPP=200.614;EPPR=120.27;GTI=0;LEN=1;MEANALT=4;MQM=60;MQMR=60;NS=3;NUMALT=2;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=2983;QR=1760;RO=54;RPL=91;RPP=200.614;RPPR=120.27;RPR=0;RUN=1;SAF=91;SAP=200.614;SAR=0;SRF=54;SRP=120.27;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 1|0:200:37,41,118:37:1230:41,118:1347,3737:-298.896,-201.181,-288.369,-9.32031,0,-73.3288 1|0:86:3,19,64:3:90:19,64:594,1978:-198.348,-151.524,-153,-40.5427,0,-28.4705 1|0:138:14,31,83:14:440:31,83:1042,2597:-253.525,-173.313,-199.356,-49.0654,0,-59.4512 dDocent_Contig_2036 107 . N C 135.042 . AB=0;ABP=0;AC=4;AF=1;AN=4;AO=4;CIGAR=1X;DP=4;DPB=4;DPRA=0;EPP=11.6962;EPPR=0;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=0;NS=2;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=139;QR=0;RO=0;RPL=0;RPP=11.6962;RPPR=0;RPR=4;RUN=1;SAF=0;SAP=11.6962;SAR=4;SRF=0;SRP=0;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 1/1:3:0,3:0:0:3:104:-9.70309,-0.90309,0 ./.:.:.:.:.:.:.:. 1/1:1:0,1:0:0:1:35:-3.49863,-0.30103,0 dDocent_Contig_2037 98 . N A 890.973 . AB=0;ABP=0;AC=6;AF=1;AN=6;AO=29;CIGAR=1X;DP=29;DPB=29;DPRA=0;EPP=65.983;EPPR=0;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=0;NS=3;NUMALT=1;ODDS=1.69407e-21;PAIRED=1;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=974;QR=0;RO=0;RPL=29;RPP=65.983;RPPR=0;RPR=0;RUN=1;SAF=29;SAP=65.983;SAR=0;SRF=0;SRP=0;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 1/1:9:0,9:0:0:9:315:-28.6888,-2.70927,0 1/1:6:0,6:0:0:6:179:-16.404,-1.80618,0 1/1:14:0,14:0:0:14:480:-43.5274,-4.21442,0 dDocent_Contig_2038 8 . C T 1013.45 . AB=0.271889;ABP=101.087;AC=2;AF=0.333333;AN=6;AO=59;CIGAR=1X6M;DP=217;DPB=214.714;DPRA=0;EPP=131.127;EPPR=304.845;GTI=0;LEN=1;MEANALT=3;MQM=60;MQMR=60;NS=3;NUMALT=3;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=1827;QR=5144;RO=139;RPL=0;RPP=131.127;RPPR=304.845;RPR=59;RUN=1;SAF=59;SAP=131.127;SAR=0;SRF=139;SRP=304.845;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|1:139:82,0,48,7:82:3032:0,48,7:0,1499,284:-95.6502,-120.335,-368.368,0,-247.994,-233.544,-96.9017,-344.943,-224.569,-342.836 0|0:35:25,0,5,5:25:931:0,5,5:0,167,191:-8.16784,-15.6936,-91.9093,-2.20005,-78.3976,-76.8924,0,-76.2374,-62.7263,-74.7322 0|1:43:32,4,6,1:32:1181:4,6,1:109,161,35:-3.03561,-4.10397,-99.553,0,-88.0936,-94.8446,-9.81353,-97.9094,-93.8033,-106.168 dDocent_Contig_2039 13 . C T 423.577 . AB=0.25;ABP=44.2683;AC=3;AF=0.5;AN=6;AO=19;CIGAR=1X;DP=76;DPB=76;DPRA=0;EPP=44.2683;EPPR=126.784;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=6.93889e-18;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=772;QR=2275;RO=57;RPL=0;RPP=44.2683;RPPR=126.784;RPR=19;RUN=1;SAF=19;SAP=44.2683;SAR=0;SRF=57;SRP=126.784;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:19:9,10:9:355:10:410:-31.541,0,-26.5922 0/1:19:17,2:17:679:2:81:-1.96616,0,-55.7197 0/1:38:31,7:31:1241:7:281:-14.2228,0,-100.523 dDocent_Contig_2040 14 . C T 74.49 . AB=0.222222;ABP=15.074;AC=1;AF=0.166667;AN=6;AO=4;CIGAR=1X;DP=119;DPB=119;DPRA=0.356436;EPP=11.6962;EPPR=252.73;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=0.947826;PAO=0;PQA=0;PQR=0;PRO=0;QA=159;QR=4585;RO=115;RPL=0;RPP=11.6962;RPPR=252.73;RPR=4;RUN=1;SAF=4;SAP=11.6962;SAR=0;SRF=115;SRP=252.73;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:52:52,0:52:2094:0:0:0,-15.6536,-188.64 0/0:49:49,0:49:1950:0:0:0,-14.7505,-175.696 0/1:18:14,4:14:541:4:159:-9.2729,0,-43.6079 dDocent_Contig_2042 66 . G C 5037.67 . AB=0.785714;ABP=22.8638;AC=5;AF=0.833333;AN=6;AO=151;CIGAR=1X;DP=162;DPB=162;DPRA=0;EPP=330.903;EPPR=26.8965;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=5898;QR=405;RO=11;RPL=151;RPP=330.903;RPPR=26.8965;RPR=0;RUN=1;SAF=151;SAP=330.903;SAR=0;SRF=11;SRP=26.8965;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:28:6,22:6:212:22:860:-69.2914,0,-10.9913 1/1:103:5,98:5:193:98:3847:-328.512,-13.2646,0 1/1:31:0,31:0:0:31:1191:-107.487,-9.33193,0 dDocent_Contig_2043 46 . A G 2385.81 . AB=0.0833333;ABP=75.3927;AC=0;AF=0;AN=6;AO=4;CIGAR=1M2X7M1X1M;DP=224;DPB=214;DPRA=0;EPP=11.6962;EPPR=207.129;GTI=0;LEN=1;MEANALT=5;MQM=60;MQMR=60;NS=3;NUMALT=5;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=155;QR=3669;RO=94;RPL=4;RPP=11.6962;RPPR=207.129;RPR=0;RUN=1;SAF=4;SAP=11.6962;SAR=0;SRF=94;SRP=207.129;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|0:138:69,0,0,50,7,11:69:2703:0,0,50,7,11:0,0,1970,272,424:-141.298,-162.069,-384.334,-162.069,-384.334,-384.334,0,-222.271,-222.271,-207.219,-139.718,-361.983,-361.983,-199.92,-359.876,-127.262,-349.526,-349.526,-187.463,-327.175,-346.215 0|0:48:12,4,4,15,0,12:12:466:4,4,15,0,12:155,158,590,0,483:-46.4426,-37.3223,-74.405,-37.0533,-62.6072,-74.1362,-1.52589,-27.0787,-26.8096,-35.2961,-50.055,-75.6091,-75.3404,-39.8115,-88.3423,-10.2448,-35.7991,-35.5301,0,-48.5325,-44.9201 0|0:38:13,0,0,19,5,1:13:500:0,0,19,5,1:0,0,734,194,41:-56.359,-60.2724,-101.316,-60.2724,-101.316,-101.316,0,-41.0401,-41.0401,-35.3206,-44.3325,-85.3764,-85.3764,-25.1,-83.8712,-56.8873,-97.9316,-97.9316,-37.6548,-81.9916,-97.6305 dDocent_Contig_2044 11 . T C 1733 . AB=0.207059;ABP=319.795;AC=3;AF=0.5;AN=6;AO=88;CIGAR=1X;DP=425;DPB=425;DPRA=0;EPP=194.1;EPPR=734.797;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=3399;QR=13214;RO=337;RPL=0;RPP=194.1;RPPR=734.797;RPR=88;RUN=1;SAF=88;SAP=194.1;SAR=0;SRF=337;SRP=734.797;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:207:162,45:162:6359:45:1730:-93.6122,0,-509.777 0/1:70:51,19:51:2017:19:744:-46.2094,0,-160.651 0/1:148:124,24:124:4838:24:925:-39.0008,0,-390.799 dDocent_Contig_2045 25 . G C 6735.1 . AB=0.866667;ABP=55.5599;AC=5;AF=0.833333;AN=6;AO=197;CIGAR=1X;DP=209;DPB=209;DPRA=0;EPP=430.79;EPPR=29.068;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=7897;QR=474;RO=12;RPL=0;RPP=430.79;RPPR=29.068;RPR=197;RUN=1;SAF=197;SAP=430.79;SAR=0;SRF=12;SRP=29.068;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 1/1:125:6,119:6:246:119:4793:-408.737,-15.1086,0 1/1:39:0,39:0:0:39:1545:-139.296,-11.7402,0 0/1:45:6,39:6:228:39:1559:-127,0,-7.33205 dDocent_Contig_2046 19 . G T 1009.75 . AB=0.282759;ABP=62.4487;AC=2;AF=0.333333;AN=6;AO=45;CIGAR=1X;DP=196;DPB=196;DPRA=0;EPP=100.727;EPPR=326.56;GTI=0;LEN=1;MEANALT=1.66667;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=1800;QR=5939;RO=149;RPL=0;RPP=100.727;RPPR=326.56;RPR=45;RUN=1;SAF=45;SAP=100.727;SAR=0;SRF=149;SRP=326.56;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:101:63,37:63:2501:37:1474:-102.394,0,-194.717 0/1:44:40,4:40:1595:4:164:-1.90458,0,-130.54 0/0:51:46,4:46:1843:4:162:0,-0.485101,-151.111 dDocent_Contig_2047 21 . T A 23984.8 . AB=0;ABP=0;AC=6;AF=1;AN=6;AO=690;CIGAR=1X;DP=710;DPB=710;DPRA=0;EPP=1501.33;EPPR=44.2683;GTI=0;LEN=1;MEANALT=1.33333;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=27429;QR=755;RO=19;RPL=0;RPP=1501.33;RPPR=44.2683;RPR=690;RUN=1;SAF=690;SAP=1501.33;SAR=0;SRF=19;SRP=44.2683;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 1/1:196:3,192:3:123:192:7585:-670.846,-47.6455,0 1/1:310:11,299:11:428:299:11920:-1033.14,-54.4542,0 1/1:204:5,199:5:204:199:7924:-694.019,-42.6661,0 dDocent_Contig_2048 10 . C G 39.4997 . AB=0.151786;ABP=120.968;AC=2;AF=0.333333;AN=6;AO=23;CIGAR=1X;DP=163;DPB=163;DPRA=0;EPP=52.9542;EPPR=307.016;GTI=0;LEN=1;MEANALT=1;MQM=37.0435;MQMR=60;NS=3;NUMALT=1;ODDS=6.93889e-18;PAIRED=0;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=852;QR=5280;RO=140;RPL=0;RPP=52.9542;RPPR=307.016;RPR=23;RUN=1;SAF=23;SAP=52.9542;SAR=0;SRF=140;SRP=307.016;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:78:65,13:65:2449:13:507:-5.44371,0,-197.102 0/1:34:30,4:30:1127:4:125:-1.31778,0,-91.4712 0/0:51:45,6:45:1704:6:220:0,-2.81943,-141.068 dDocent_Contig_2050 57 . C A 163.074 . AB=0.169811;ABP=53.2;AC=2;AF=0.333333;AN=6;AO=9;CIGAR=1X2M1X1M1X;DP=53;DPB=53;DPRA=0;EPP=22.5536;EPPR=79.0118;GTI=0;LEN=1;MEANALT=2;MQM=60;MQMR=60;NS=3;NUMALT=2;ODDS=6.93889e-18;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=353;QR=1354;RO=35;RPL=9;RPP=22.5536;RPPR=79.0118;RPR=0;RUN=1;SAF=9;SAP=22.5536;SAR=0;SRF=35;SRP=79.0118;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|1:26:18,4,4:18:682:4,4:159,159:-7.67223,0,-54.6871,-0.00112647,-42.7982,-54.6882 0|1:16:9,4,3:9:363:4,3:155,114:-10.0287,0,-28.7358,-3.39265,-20.5972,-32.423 0|0:11:8,1,2:8:309:1,2:39,78:-4.00352,-3.20588,-28.2808,0,-22.1693,-24.7736 dDocent_Contig_2051 74 . C T 1585.21 . AB=0.202783;ABP=388.958;AC=3;AF=0.5;AN=6;AO=102;CIGAR=1X3M2D5M;DP=503;DPB=484.273;DPRA=0;EPP=224.5;EPPR=862.913;GTI=0;LEN=1;MEANALT=2.66667;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=3485;QR=13487;RO=396;RPL=102;RPP=224.5;RPPR=862.913;RPR=0;RUN=1;SAF=102;SAP=224.5;SAR=0;SRF=396;SRP=862.913;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|1:260:209,47:209:7149:47:1615:-68.3211,0,-566.215 0|1:116:80,36:80:2733:36:1209:-74.1872,0,-211.306 0|1:127:107,19:107:3605:19:661:-21.5358,0,-286.397 dDocent_Contig_2054 51 . C A 30.5924 . AB=0.222222;ABP=9.04217;AC=1;AF=0.166667;AN=6;AO=3;CIGAR=1X;DP=30;DPB=30;DPRA=2;EPP=9.52472;EPPR=61.6401;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=120;QR=1078;RO=27;RPL=3;RPP=9.52472;RPPR=61.6401;RPR=0;RUN=1;SAF=3;SAP=9.52472;SAR=0;SRF=27;SRP=61.6401;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:15:14,1:14:563:1:40:0,-0.519771,-47.0175 0/0:6:6,0:6:240:0:0:0,-1.80618,-21.9757 0/1:9:7,2:7:275:2:80:-4.8823,0,-22.4069 dDocent_Contig_2055 27 . A G 82.0119 . AB=0.15;ABP=45.5712;AC=1;AF=0.166667;AN=6;AO=10;CIGAR=1X;DP=191;DPB=191;DPRA=1.11864;EPP=24.725;EPPR=396.047;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=6.93889e-18;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=396;QR=7157;RO=181;RPL=0;RPP=24.725;RPPR=396.047;RPR=10;RUN=1;SAF=10;SAP=24.725;SAR=0;SRF=181;SRP=396.047;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:92:88,4:88:3489:4:155:0,-13.3704,-299.72 0/0:59:59,0:59:2326:0:0:0,-17.7608,-209.502 0/1:40:34,6:34:1342:6:241:-10.0251,0,-108.997 dDocent_Contig_2056 32 . G A 314.926 . AB=0.234375;ABP=42.2325;AC=2;AF=0.333333;AN=6;AO=15;CIGAR=1X;DP=72;DPB=72;DPRA=4;EPP=35.5824;EPPR=126.784;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=595;QR=2299;RO=57;RPL=0;RPP=35.5824;RPPR=126.784;RPR=15;RUN=1;SAF=15;SAP=35.5824;SAR=0;SRF=57;SRP=126.784;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:35:25,10:25:997:10:400:-25.8229,0,-79.4903 0/0:8:8,0:8:327:0:0:0,-2.40824,-29.8001 0/1:29:24,5:24:975:5:195:-9.19257,0,-79.3168 dDocent_Contig_2057 25 . T C 46.0963 . AB=0.106667;ABP=103.796;AC=1;AF=0.166667;AN=6;AO=8;CIGAR=1X;DP=200;DPB=200;DPRA=1.2;EPP=20.3821;EPPR=419.933;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=315;QR=7232;RO=192;RPL=0;RPP=20.3821;RPPR=419.933;RPR=8;RUN=1;SAF=8;SAP=20.3821;SAR=0;SRF=192;SRP=419.933;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:75:67,8:67:2562:8:315:-6.1325,0,-208.196 0/0:64:64,0:64:2412:0:0:0,-19.2659,-217.291 0/0:61:61,0:61:2258:0:0:0,-18.3628,-203.444 dDocent_Contig_2058 24 . G A 64.1574 . AB=0.106195;ABP=155.225;AC=2;AF=0.333333;AN=6;AO=16;CIGAR=1X;DP=266;DPB=266;DPRA=0;EPP=37.7539;EPPR=545.878;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=641;QR=9523;RO=250;RPL=0;RPP=37.7539;RPPR=545.878;RPR=16;RUN=1;SAF=16;SAP=37.7539;SAR=0;SRF=250;SRP=545.878;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:153:149,4:149:5709:4:161:0,-31.1823,-498.885 0/1:49:44,5:44:1649:5:201:-3.72063,0,-133.917 0/1:64:57,7:57:2165:7:279:-6.21523,0,-175.8 dDocent_Contig_2059 18 . A G 2839.39 . AB=0.363354;ABP=55.2335;AC=4;AF=0.666667;AN=6;AO=117;CIGAR=1X7M;DP=322;DPB=322;DPRA=0;EPP=257.073;EPPR=100.727;GTI=0;LEN=1;MEANALT=9.66667;MQM=36.7265;MQMR=55.8222;NS=3;NUMALT=5;ODDS=0;PAIRED=0.188034;PAIREDR=0.733333;PAO=0;PQA=0;PQR=0;PRO=0;QA=3659;QR=1771;RO=45;RPL=0;RPP=257.073;RPPR=100.727;RPR=117;RUN=1;SAF=117;SAP=257.073;SAR=0;SRF=45;SRP=100.727;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 1|1:64:2,4,6,7,8,29:2:81:4,6,7,8,29:48,175,274,319,1003:-96.4191,-94.9526,-100.431,-83.9974,-88.6133,-88.8743,-87.8323,-92.449,-81.4935,-92.4078,-70.7336,-75.3495,-64.3925,-68.2287,-75.0092,-19.6239,-24.2515,-13.2838,-17.1296,0,-17.5818 0|1:158:20,0,14,34,15,66:20:778:0,14,34,15,66:0,341,1330,259,2072:-148.521,-154.541,-212.554,-129.935,-187.949,-183.734,-99.9505,-157.965,-133.362,-147.73,-139.443,-197.456,-172.852,-142.872,-192.94,0,-58.0299,-33.4244,-3.44644,-42.9387,-38.1619 0|1:100:23,0,23,20,1,22:23:912:0,23,20,1,22:0,679,780,20,584:-44.5225,-51.4462,-126.492,0,-75.0602,-68.1365,-19.6575,-94.7079,-43.2835,-88.6873,-50.2172,-125.263,-73.8316,-93.4795,-124.962,-10.6271,-85.6814,-34.2547,-53.9084,-84.453,-79.0588 dDocent_Contig_2060 17 . A G 690.513 . AB=0.230769;ABP=84.8581;AC=1;AF=0.166667;AN=6;AO=30;CIGAR=1X;DP=226;DPB=226;DPRA=2.70833;EPP=68.1545;EPPR=428.619;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=1216;QR=7768;RO=196;RPL=0;RPP=68.1545;RPPR=428.619;RPR=30;RUN=1;SAF=30;SAP=68.1545;SAR=0;SRF=196;SRP=428.619;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:130:100,30:100:3991:30:1216:-70.5742,0,-320.034 0/0:39:39,0:39:1515:0:0:0,-11.7402,-136.6 0/0:57:57,0:57:2262:0:0:0,-17.1587,-203.75 dDocent_Contig_2061 110 . A G 1657.5 . AB=0.485507;ABP=3.26206;AC=3;AF=0.5;AN=6;AO=67;CIGAR=1X4M;DP=138;DPB=138;DPRA=0;EPP=148.499;EPPR=150.67;GTI=0;LEN=1;MEANALT=1.66667;MQM=60;MQMR=60;NS=3;NUMALT=2;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=2347;QR=2352;RO=68;RPL=0;RPP=148.499;RPPR=150.67;RPR=67;RUN=1;SAF=0;SAP=148.499;SAR=67;SRF=0;SRP=150.67;SRR=68;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|1:70:40,0,30:40:1385:0,30:0,1062:-74.8187,-86.8599,-199.418,0,-112.909,-103.878 0|1:36:13,2,20:13:446:2,20:70,684:-51.667,-49.8832,-85.4984,0,-30.5784,-30.2564 0|1:32:15,0,17:15:521:0,17:0,601:-44.7871,-49.3025,-91.6566,0,-42.7042,-37.5867 dDocent_Contig_2062 10 . C A 225.813 . AB=0.254902;ABP=29.6215;AC=3;AF=0.5;AN=6;AO=13;CIGAR=1X;DP=51;DPB=51;DPRA=0;EPP=31.2394;EPPR=85.5263;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=450;QR=1484;RO=38;RPL=0;RPP=31.2394;RPPR=85.5263;RPR=13;RUN=1;SAF=13;SAP=31.2394;SAR=0;SRF=38;SRP=85.5263;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:17:15,2:15:597:2:54:-0.00987963,0,-48.9528 0/1:21:15,6:15:565:6:205:-12.4578,0,-44.855 0/1:13:8,5:8:322:5:191:-13.6449,0,-25.4348 dDocent_Contig_2064 17 . A C 766.679 . AB=0.281818;ABP=48.4928;AC=3;AF=0.5;AN=6;AO=31;CIGAR=1X5M1X;DP=110;DPB=110;DPRA=0;EPP=70.3259;EPPR=161.528;GTI=0;LEN=1;MEANALT=2.33333;MQM=60;MQMR=60;NS=3;NUMALT=2;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=1227;QR=2897;RO=73;RPL=0;RPP=70.3259;RPPR=161.528;RPR=31;RUN=1;SAF=31;SAP=70.3259;SAR=0;SRF=73;SRP=161.528;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|1:79:53,1,24:53:2114:1,24:39,952:-62.3965,-75.1455,-248.944,0,-170.892,-166.873 0|1:17:11,1,5:11:424:1,5:40,196:-12.7975,-12.8124,-47.3223,0,-31.5058,-33.297 0|1:14:9,3,2:9:359:3,2:118,79:-6.99659,0,-28.6657,-3.20461,-23.0689,-32.1723 dDocent_Contig_2066 16 . A G 260.831 . AB=0.216667;ABP=44.8473;AC=1;AF=0.166667;AN=6;AO=14;CIGAR=1X;DP=131;DPB=131;DPRA=0.649123;EPP=33.4109;EPPR=257.073;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=0.923077;PAO=0;PQA=0;PQR=0;PRO=0;QA=548;QR=4653;RO=117;RPL=0;RPP=33.4109;RPPR=257.073;RPR=14;RUN=1;SAF=14;SAP=33.4109;SAR=0;SRF=117;SRP=257.073;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:57:57,0:57:2280:0:0:0,-17.1587,-205.363 0/1:60:47,13:47:1845:13:507:-27.9059,0,-148.201 0/0:14:13,1:13:528:1:41:0,-0.119853,-43.7725 dDocent_Contig_2067 9 . C A 976.463 . AB=0.116162;ABP=256.393;AC=3;AF=0.5;AN=6;AO=23;CIGAR=1X2M5I2M;DP=198;DPB=224;DPRA=0;EPP=52.9542;EPPR=304.845;GTI=0;LEN=1;MEANALT=2;MQM=60;MQMR=60;NS=3;NUMALT=2;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=900;QR=5294;RO=139;RPL=0;RPP=52.9542;RPPR=304.845;RPR=23;RUN=1;SAF=23;SAP=52.9542;SAR=0;SRF=139;SRP=304.845;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|1:109:73,29,4:73:2745:29,4:1023,153:-61.1704,0,-216.14,-70.589,-212.316,-294.27 0|1:42:34,0,8:34:1310:0,8:0,310:-15.617,-25.852,-133.41,0,-107.945,-105.537 0|1:47:32,4,11:32:1239:4,11:139,437:-26.3818,-24.7451,-125.309,0,-90.5323,-98.4996 dDocent_Contig_2068 9 . C G 353.892 . AB=0.24;ABP=47.0478;AC=2;AF=0.333333;AN=6;AO=24;CIGAR=1X;DP=159;DPB=159;DPRA=0;EPP=55.1256;EPPR=296.159;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=892;QR=4819;RO=135;RPL=0;RPP=55.1256;RPPR=296.159;RPR=24;RUN=1;SAF=24;SAP=55.1256;SAR=0;SRF=135;SRP=296.159;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:84:78,6:78:2751:6:217:0,-5.4078,-227.893 0/1:25:12,13:12:438:13:482:-36.1937,0,-32.2284 0/1:50:45,5:45:1630:5:193:-2.68986,0,-131.908 dDocent_Contig_2069 9 . C A 37.7348 . AB=0.285714;ABP=5.80219;AC=1;AF=0.166667;AN=6;AO=2;CIGAR=1X;DP=23;DPB=23;DPRA=0.875;EPP=7.35324;EPPR=48.6112;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=78;QR=789;RO=21;RPL=0;RPP=7.35324;RPPR=48.6112;RPR=2;RUN=1;SAF=2;SAP=7.35324;SAR=0;SRF=21;SRP=48.6112;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:7:5,2:5:193:2:78:-5.29626,0,-15.6341 0/0:10:10,0:10:379:0:0:0,-3.0103,-34.4616 0/0:6:6,0:6:217:0:0:0,-1.80618,-19.881 dDocent_Contig_2070 20 . T A 119.783 . AB=0.175;ABP=39.7082;AC=1;AF=0.166667;AN=6;AO=7;CIGAR=1X;DP=112;DPB=112;DPRA=1.11111;EPP=18.2106;EPPR=231.015;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=3.46945e-18;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=283;QR=4190;RO=105;RPL=0;RPP=18.2106;RPPR=231.015;RPR=7;RUN=1;SAF=7;SAP=18.2106;SAR=0;SRF=105;SRP=231.015;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:25:25,0:25:976:0:0:0,-7.52575,-88.1369 0/0:47:47,0:47:1895:0:0:0,-14.1484,-170.752 0/1:40:33,7:33:1319:7:283:-13.8022,0,-106.933 dDocent_Contig_2071 85 . T G 2670.18 . AB=0.658228;ABP=20.1897;AC=4;AF=0.666667;AN=6;AO=93;CIGAR=1X;DP=121;DPB=121;DPRA=0;EPP=204.957;EPPR=63.8115;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=3301;QR=992;RO=28;RPL=93;RPP=204.957;RPPR=63.8115;RPR=0;RUN=1;SAF=93;SAP=204.957;SAR=0;SRF=28;SRP=63.8115;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 1/1:42:1,41:1:37:41:1455:-127.549,-8.94543,0 0/1:60:18,42:18:632:42:1493:-116.603,0,-39.1444 0/1:19:9,10:9:323:10:353:-26.3896,0,-23.6953 dDocent_Contig_2072 10 . A G 6320.38 . AB=0.106719;ABP=342.902;AC=1;AF=0.166667;AN=6;AO=27;CIGAR=1X2M1X;DP=253;DPB=253;DPRA=0;EPP=61.6401;EPPR=76.8404;GTI=0;LEN=1;MEANALT=2;MQM=60;MQMR=60;NS=3;NUMALT=2;ODDS=2.77556e-17;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=1026;QR=1310;RO=34;RPL=0;RPP=61.6401;RPPR=76.8404;RPR=27;RUN=1;SAF=27;SAP=61.6401;SAR=0;SRF=34;SRP=76.8404;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 1|0:160:14,22,124:14:528:22,124:828,4871:-420.952,-357.331,-393.974,-24.5699,0,-30.5095 0|0:20:5,2,13:5:199:2,13:80,514:-40.7903,-35.7047,-51.4894,0,-9.79385,-12.4712 0|0:73:15,3,55:15:583:3,55:118,2190:-175.818,-170.627,-217.629,0,-38.1956,-31.3462 dDocent_Contig_2073 35 . C T 534.176 . AB=0.160173;ABP=234.719;AC=3;AF=0.5;AN=6;AO=37;CIGAR=1X;DP=231;DPB=231;DPRA=0;EPP=83.3548;EPPR=424.276;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=1396;QR=7551;RO=194;RPL=0;RPP=83.3548;RPPR=424.276;RPR=37;RUN=1;SAF=37;SAP=83.3548;SAR=0;SRF=194;SRP=424.276;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:108:90,18:90:3498:18:676:-28.6619,0,-282.37 0/1:54:41,13:41:1614:13:491:-28.2762,0,-129.246 0/1:69:63,6:63:2439:6:229:-0.204798,0,-198.907 dDocent_Contig_2074 7 . G A 2469.6 . AB=0.669291;ABP=34.6249;AC=3;AF=0.5;AN=6;AO=85;CIGAR=1X1M1X;DP=127;DPB=127;DPRA=0;EPP=187.585;EPPR=92.0407;GTI=0;LEN=1;MEANALT=1.33333;MQM=59.4706;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=0.988235;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=3245;QR=1467;RO=41;RPL=0;RPP=187.585;RPPR=92.0407;RPR=85;RUN=1;SAF=85;SAP=187.585;SAR=0;SRF=41;SRP=92.0407;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|1:70:28,42:28:989:42:1606:-123.737,0,-68.2386 0|1:19:6,13:6:226:13:496:-37.0912,0,-14.9814 0|1:38:7,30:7:252:30:1143:-91.6545,0,-11.5109 dDocent_Contig_2076 86 . G T 63.1619 . AB=0.166667;ABP=43.5445;AC=2;AF=0.333333;AN=6;AO=8;CIGAR=1X;DP=57;DPB=57;DPRA=0;EPP=20.3821;EPPR=109.412;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=278;QR=1651;RO=49;RPL=8;RPP=20.3821;RPPR=109.412;RPR=0;RUN=1;SAF=8;SAP=20.3821;SAR=0;SRF=49;SRP=109.412;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:18:14,4:14:485:4:133:-6.87934,0,-38.5616 0/1:24:21,3:21:712:3:109:-2.94337,0,-57.1723 0/0:15:14,1:14:454:1:36:0,-0.917175,-37.5716 dDocent_Contig_2077 21 . C T 1207.3 . AB=0.293103;ABP=46.1402;AC=2;AF=0.333333;AN=6;AO=34;CIGAR=1M1D1X4M;DP=116;DPB=105.857;DPRA=0;EPP=76.8404;EPPR=100.727;GTI=0;LEN=1;MEANALT=2;MQM=60;MQMR=60;NS=3;NUMALT=2;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=1360;QR=1793;RO=45;RPL=0;RPP=76.8404;RPPR=100.727;RPR=34;RUN=1;SAF=34;SAP=76.8404;SAR=0;SRF=45;SRP=100.727;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|1:48:21,14,13:21:842:14,13:572,514:-40.8841,0,-65.1612,-4.91695,-27.0826,-70.3712 0|0:37:17,8,12:17:680:8,12:312,450:-31.7241,-11.195,-64.8154,0,-30.3834,-52.4085 1|0:31:7,12,12:7:271:12,12:476,472:-53.6444,-16.5715,-35.2122,-16.9327,0,-35.5721 dDocent_Contig_2078 85 . C T 4419.21 . AB=0.861111;ABP=43.7857;AC=5;AF=0.833333;AN=6;AO=153;CIGAR=1X;DP=163;DPB=163;DPRA=0;EPP=335.246;EPPR=24.725;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=5217;QR=349;RO=10;RPL=153;RPP=335.246;RPPR=24.725;RPR=0;RUN=1;SAF=153;SAP=335.246;SAR=0;SRF=10;SRP=24.725;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 1/1:108:5,103:5:175:103:3541:-302.824,-16.4175,0 1/1:19:0,19:0:0:19:637:-57.645,-5.71957,0 0/1:36:5,31:5:174:31:1039:-82.9748,0,-5.16487 dDocent_Contig_2080 7 . A G 3094.52 . AB=0.0655738;ABP=202.999;AC=4;AF=0.666667;AN=6;AO=8;CIGAR=1X13M;DP=158;DPB=182.429;DPRA=0;EPP=20.3821;EPPR=52.9542;GTI=0;LEN=1;MEANALT=8;MQM=60;MQMR=60;NS=3;NUMALT=4;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=255;QR=880;RO=23;RPL=0;RPP=20.3821;RPPR=52.9542;RPR=8;RUN=1;SAF=8;SAP=20.3821;SAR=0;SRF=23;SRP=52.9542;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|1:36:15,16,1,1,0:15:575:16,1,1,0:608,39,36,0:-45.4411,0,-42.4738,-46.7487,-44.0823,-93.6561,-47.0186,-44.3523,-91.0198,-93.9254,-49.9565,-47.2902,-93.9571,-94.2265,-97.1638 0|1:48:8,29,4,2,1:8:305:29,4,2,1:1079,148,76,30:-85.9183,0,-16.3027,-76.2181,-12.9226,-100.036,-82.0927,-18.7975,-95.0064,-106.513,-85.9296,-22.6374,-98.843,-104.718,-110.65 1|1:74:0,53,2,7,7:0:0:53,2,7,7:1976,67,266,225:-183.615,-21.8354,-5.88085,-178.19,-16.4095,-177.588,-161.799,0,-156.374,-159.692,-165.486,-3.7095,-160.06,-143.67,-163.378 dDocent_Contig_2081 7 . A G 1309.87 . AB=0.567308;ABP=7.10269;AC=3;AF=0.5;AN=6;AO=59;CIGAR=1X;DP=104;DPB=104;DPRA=0;EPP=131.127;EPPR=98.5551;GTI=0;LEN=1;MEANALT=1.33333;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=1853;QR=1641;RO=44;RPL=0;RPP=131.127;RPPR=98.5551;RPR=59;RUN=1;SAF=59;SAP=131.127;SAR=0;SRF=44;SRP=98.5551;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:64:29,34:29:1095:34:1050:-75.6812,0,-79.7721 0/1:15:3,12:3:117:12:375:-29.5322,0,-6.39493 0/1:25:12,13:12:429:13:428:-31.2963,0,-31.4159 dDocent_Contig_2082 16 . G A 516.839 . AB=0.217391;ABP=66.8327;AC=2;AF=0.333334;AN=6;AO=28;CIGAR=1X3M;DP=221;DPB=221;DPRA=0;EPP=63.8115;EPPR=387.361;GTI=0;LEN=1;MEANALT=2.66667;MQM=60;MQMR=60;NS=3;NUMALT=2;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=1103;QR=6858;RO=177;RPL=0;RPP=63.8115;RPPR=387.361;RPR=28;RUN=1;SAF=28;SAP=63.8115;SAR=0;SRF=177;SRP=387.361;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|0:129:118,2,8:118:4540:2,8:58,298:0,-30.917,-403.055,-11.0328,-379.275,-381.479 0|1:56:29,8,18:29:1141:8,18:296,727:-51.2311,-35.7616,-127.21,0,-69.6788,-88.4638 0|1:36:30,4,2:30:1177:4,2:158,78:-3.97412,0,-95.5933,-6.59508,-90.3859,-102.786 dDocent_Contig_2083 30 . G C 73.3201 . AB=0.210526;ABP=16.8392;AC=1;AF=0.166667;AN=6;AO=4;CIGAR=1X;DP=63;DPB=63;DPRA=0.863636;EPP=11.6962;EPPR=131.127;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=0.966102;PAO=0;PQA=0;PQR=0;PRO=0;QA=161;QR=2310;RO=59;RPL=0;RPP=11.6962;RPPR=131.127;RPR=4;RUN=1;SAF=4;SAP=11.6962;SAR=0;SRF=59;SRP=131.127;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:17:17,0:17:677:0:0:0,-5.11751,-61.2613 0/1:19:15,4:15:574:4:161:-9.15591,0,-46.2756 0/0:27:27,0:27:1059:0:0:0,-8.12781,-95.6071 dDocent_Contig_2084 13 . A T 322.631 . AB=0.197802;ABP=75.1939;AC=2;AF=0.333333;AN=6;AO=19;CIGAR=1M1I1X;DP=142;DPB=151.5;DPRA=0;EPP=44.2683;EPPR=270.101;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=6.93889e-18;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=731;QR=4826;RO=123;RPL=0;RPP=44.2683;RPPR=270.101;RPR=19;RUN=1;SAF=19;SAP=44.2683;SAR=0;SRF=123;SRP=270.101;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|1:73:61,12:61:2392:12:460:-19.7736,0,-193.479 0|1:18:12,6:12:471:6:234:-16.0124,0,-37.3186 0|0:51:50,1:50:1963:1:37:0,-11.6547,-173.182 dDocent_Contig_2085 10 . T C 97.4436 . AB=0.112903;ABP=164.4;AC=2;AF=0.333333;AN=6;AO=19;CIGAR=1X;DP=197;DPB=197;DPRA=0;EPP=44.2683;EPPR=389.532;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=720;QR=6653;RO=178;RPL=0;RPP=44.2683;RPPR=389.532;RPR=19;RUN=1;SAF=19;SAP=44.2683;SAR=0;SRF=178;SRP=389.532;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:71:64,7:64:2417:7:283:-4.47045,0,-196.343 0/0:73:68,5:68:2615:5:166:0,-6.71738,-220.261 0/1:53:46,7:46:1621:7:271:-8.79629,0,-130.157 dDocent_Contig_2087 52 . C T 1803.45 . AB=0.688172;ABP=31.613;AC=3;AF=0.5;AN=6;AO=64;CIGAR=1X3M;DP=93;DPB=93;DPRA=0;EPP=141.985;EPPR=57.2971;GTI=0;LEN=1;MEANALT=2;MQM=60;MQMR=60;NS=3;NUMALT=2;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=2360;QR=946;RO=25;RPL=64;RPP=141.985;RPPR=57.2971;RPR=0;RUN=1;SAF=64;SAP=141.985;SAR=0;SRF=25;SRP=57.2971;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|1:36:10,0,26:10:394:0,26:0,950:-74.9644,-77.9747,-110.398,0,-32.8086,-24.9818 0|1:32:7,1,24:7:268:1,24:40,906:-72.1219,-70.9332,-92.6271,0,-18.6817,-14.7542 0|1:25:8,2,14:8:284:2,14:70,504:-38.7811,-35.4949,-58.0297,0,-17.4969,-18.9802 dDocent_Contig_2088 7 . G C 5692.75 . AB=0.100257;ABP=542.925;AC=3;AF=0.5;AN=6;AO=39;CIGAR=1X3M;DP=389;DPB=389;DPRA=0;EPP=87.6977;EPPR=309.188;GTI=0;LEN=1;MEANALT=3.66667;MQM=57.7436;MQMR=60;NS=3;NUMALT=2;ODDS=0;PAIRED=0.923077;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=1459;QR=4911;RO=141;RPL=0;RPP=87.6977;RPPR=309.188;RPR=39;RUN=1;SAF=39;SAP=87.6977;SAR=0;SRF=141;SRP=309.188;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|1:238:79,134,20:79:2775:134,20:5143,733:-398.144,0,-185.519,-362.3,-166.225,-582.1 0|1:82:31,29,16:31:1077:29,16:1111,609:-81.7248,0,-78.8065,-41.6453,-38.1163,-124.363 0|1:69:31,33,3:31:1059:33,3:1270,117:-94.929,0,-76.048,-94.6416,-76.3591,-179.653 dDocent_Contig_2090 10 . A G 965.219 . AB=0.0535714;ABP=99.951;AC=2;AF=0.333333;AN=6;AO=3;CIGAR=1X2M1X;DP=125;DPB=125;DPRA=0;EPP=9.52472;EPPR=118.098;GTI=0;LEN=1;MEANALT=5;MQM=60;MQMR=60;NS=3;NUMALT=3;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=83;QR=2040;RO=53;RPL=0;RPP=9.52472;RPPR=118.098;RPR=3;RUN=1;SAF=3;SAP=9.52472;SAR=0;SRF=53;SRP=118.098;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|1:56:26,14,3,10:26:990:14,3,10:491,83,314:-32.1554,0,-77.0538,-33.4201,-74.7072,-113.754,-14.7472,-56.0429,-89.4305,-92.9811 1|0:26:2,11,0,13:2:78:11,0,13:345,0,367:-49.7188,-22.5806,-25.6953,-50.3209,-29.0067,-56.7398,-21.238,0,-27.6615,-23.7481 0|0:43:25,5,0,10:25:972:5,0,10:182,0,341:-20.1706,-12.8131,-91.2469,-27.6963,-92.7521,-107.618,0,-65.0934,-79.9582,-76.9479 dDocent_Contig_2091 19 . G A 344.179 . AB=0.118943;ABP=289.31;AC=2;AF=0.333333;AN=6;AO=27;CIGAR=1M1X7M;DP=227;DPB=211.444;DPRA=0;EPP=61.6401;EPPR=387.361;GTI=0;LEN=1;MEANALT=3;MQM=60;MQMR=60;NS=3;NUMALT=2;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=1063;QR=6918;RO=177;RPL=0;RPP=61.6401;RPPR=387.361;RPR=27;RUN=1;SAF=27;SAP=61.6401;SAR=0;SRF=177;SRP=387.361;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|0:139:110,15,12:110:4298:15,12:535,462:-10.4891,0,-348.835,-5.65941,-315.425,-355.416 0|1:43:31,2,9:31:1219:2,9:64,367:-21.0498,-25.2356,-124.912,0,-95.2308,-97.6743 0|1:45:36,3,6:36:1401:3,6:115,234:-8.4019,-9.80228,-124.035,0,-105.703,-113.336 dDocent_Contig_2092 36 . G C 51.5915 . AB=0.16;ABP=28.1125;AC=1;AF=0.166667;AN=6;AO=4;CIGAR=1X;DP=67;DPB=67;DPRA=1.19048;EPP=11.6962;EPPR=139.813;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=157;QR=2443;RO=63;RPL=0;RPP=11.6962;RPPR=139.813;RPR=4;RUN=1;SAF=4;SAP=11.6962;SAR=0;SRF=63;SRP=139.813;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:31:31,0:31:1205:0:0:0,-9.33193,-108.731 0/1:25:21,4:21:796:4:157:-6.98305,0,-64.4226 0/0:11:11,0:11:442:0:0:0,-3.31133,-40.1349 dDocent_Contig_2093 53 . G C 450.32 . AB=0.205357;ABP=87.4651;AC=3;AF=0.5;AN=6;AO=23;CIGAR=1X;DP=112;DPB=112;DPRA=0;EPP=52.9542;EPPR=196.271;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=6.93889e-18;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=924;QR=3514;RO=89;RPL=23;RPP=52.9542;RPPR=196.271;RPR=0;RUN=1;SAF=23;SAP=52.9542;SAR=0;SRF=89;SRP=196.271;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:79:65,14:65:2556:14:563:-27.2319,0,-206.405 0/1:19:13,6:13:521:6:239:-16.1649,0,-41.5171 0/1:14:11,3:11:437:3:122:-7.15807,0,-35.4688 dDocent_Contig_2095 34 . T C 2165.04 . AB=0.28125;ABP=136.013;AC=3;AF=0.5;AN=6;AO=90;CIGAR=1X;DP=320;DPB=320;DPRA=0;EPP=198.443;EPPR=502.449;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=1.38778e-17;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=3528;QR=9110;RO=230;RPL=0;RPP=198.443;RPPR=502.449;RPR=90;RUN=1;SAF=90;SAP=198.443;SAR=0;SRF=230;SRP=502.449;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:215:149,66:149:5914:66:2593:-168.792,0,-467.326 0/1:53:40,13:40:1587:13:502:-29.5674,0,-127.11 0/1:52:41,11:41:1609:11:433:-23.6677,0,-129.392 dDocent_Contig_2096 7 . G A 82.9033 . AB=0.208333;ABP=20.744;AC=1;AF=0.166667;AN=6;AO=11;CIGAR=1X;DP=106;DPB=106;DPRA=0;EPP=26.8965;EPPR=202.786;GTI=0;LEN=1;MEANALT=1.66667;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=405;QR=3157;RO=92;RPL=0;RPP=26.8965;RPPR=202.786;RPR=11;RUN=1;SAF=11;SAP=26.8965;SAR=0;SRF=92;SRP=202.786;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:17:16,1:16:532:1:30:0,-2.11794,-45.1855 0/0:65:58,5:58:2040:5:188:0,-1.86691,-166.633 0/1:24:18,5:18:585:5:187:-10.1142,0,-45.904 dDocent_Contig_2098 186 . T C 3279.67 . AB=0.722973;ABP=66.922;AC=3;AF=0.5;AN=6;AO=107;CIGAR=1X;DP=148;DPB=148;DPRA=0;EPP=235.358;EPPR=92.0407;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=4192;QR=1609;RO=41;RPL=107;RPP=235.358;RPPR=92.0407;RPR=0;RUN=1;SAF=0;SAP=235.358;SAR=107;SRF=0;SRP=92.0407;SRR=41;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:73:29,44:29:1130:44:1697:-130.976,0,-80.0104 0/1:25:4,21:4:158:21:827:-67.2134,0,-7.07422 0/1:50:8,42:8:321:42:1668:-135.301,0,-14.2048 dDocent_Contig_2100 7 . G A 132.234 . AB=0.186047;ABP=39.8243;AC=1;AF=0.166667;AN=6;AO=8;CIGAR=1X;DP=140;DPB=140;DPRA=0.886598;EPP=20.3821;EPPR=285.302;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=307;QR=4161;RO=130;RPL=0;RPP=20.3821;RPPR=285.302;RPR=8;RUN=1;SAF=8;SAP=20.3821;SAR=0;SRF=130;SRP=285.302;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:56:55,0:55:1723:0:0:0,-16.5566,-155.193 0/0:41:40,0:40:1333:0:0:0,-12.0412,-120.042 0/1:43:35,8:35:1105:8:307:-15.0473,0,-86.7657 dDocent_Contig_2101 26 . C T 404.902 . AB=0.22619;ABP=57.7107;AC=2;AF=0.333333;AN=6;AO=19;CIGAR=1X;DP=124;DPB=124;DPRA=1.05;EPP=44.2683;EPPR=231.015;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=762;QR=4085;RO=105;RPL=0;RPP=44.2683;RPPR=231.015;RPR=19;RUN=1;SAF=19;SAP=44.2683;SAR=0;SRF=105;SRP=231.015;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:26:19,7:19:740:7:281:-17.8349,0,-59.0903 0/0:40:40,0:40:1560:0:0:0,-12.0412,-140.639 0/1:58:46,12:46:1785:12:481:-26.1782,0,-143.397 dDocent_Contig_2102 7 . G A 506.016 . AB=0.422222;ABP=5.37479;AC=1;AF=0.166667;AN=6;AO=22;CIGAR=1X;DP=80;DPB=80;DPRA=0;EPP=50.7827;EPPR=118.251;GTI=0;LEN=1;MEANALT=1.33333;MQM=60;MQMR=59.1404;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=0.982456;PAO=0;PQA=0;PQR=0;PRO=0;QA=833;QR=1782;RO=57;RPL=0;RPP=50.7827;RPPR=126.784;RPR=22;RUN=1;SAF=22;SAP=50.7827;SAR=0;SRF=56;SRP=118.251;SRR=1;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:45:26,19:26:807:19:726:-52.122,0,-57.1894 0/0:11:10,1:10:332:1:32:0,-0.112017,-26.9933 0/0:24:21,2:21:643:2:75:0,-0.00159778,-51.1038 dDocent_Contig_2103 10 . G A 1566.88 . AB=0.280255;ABP=68.8599;AC=4;AF=0.666666;AN=6;AO=44;CIGAR=1X3M;DP=157;DPB=157;DPRA=0;EPP=98.5551;EPPR=124.613;GTI=0;LEN=1;MEANALT=2.66667;MQM=60;MQMR=60;NS=3;NUMALT=3;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=1681;QR=2136;RO=56;RPL=0;RPP=98.5551;RPPR=124.613;RPR=44;RUN=1;SAF=44;SAP=98.5551;SAR=0;SRF=56;SRP=124.613;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|1:86:45,22,19,0:45:1709:22,19,0:843,708,0:-55.6389,0,-133.505,-11.2467,-82.1863,-145.647,-69.1852,-140.128,-151.367,-209.309 1|1:33:5,9,14,5:5:189:9,14,5:355,538,202:-56.3707,-28.666,-41.4466,-13.7229,0,-24.9955,-41.2199,-27.4982,-12.5527,-55.2051 1|0:38:6,10,11,11:6:238:10,11,11:373,435,435:-50.2008,-21.4856,-38.0673,-16.2065,-5.28093,-32.4896,-16.208,-5.28237,0,-32.491 dDocent_Contig_2104 41 . T C 899.756 . AB=0.0657895;ABP=251.93;AC=0;AF=0;AN=6;AO=10;CIGAR=9M1X5M;DP=205;DPB=176.4;DPRA=0;EPP=24.725;EPPR=263.587;GTI=0;LEN=1;MEANALT=5;MQM=60;MQMR=60;NS=3;NUMALT=4;ODDS=2.77556e-17;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=379;QR=4633;RO=120;RPL=0;RPP=24.725;RPPR=263.587;RPR=10;RUN=1;SAF=10;SAP=24.725;SAR=0;SRF=120;SRP=263.587;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|0:57:21,16,4,10,5:21:819:16,4,10,5:618,151,386,190:-44.433,0,-62.5166,-38.3798,-54.9587,-104.503,-19.0505,-35.6307,-74.0058,-83.3698,-35.1778,-51.7569,-90.131,-70.804,-101 0|0:95:64,8,1,16,5:64:2484:8,1,16,5:324,41,616,189:-31.3146,-23.8555,-225.55,-47.1955,-224.574,-250.991,0,-177.383,-200.717,-199.285,-35.0921,-212.47,-235.804,-188.613,-237.683 0|0:53:35,9,0,8,0:35:1330:9,0,8,0:367,0,314,0:-19.7509,0,-106.344,-30.287,-109.054,-139.337,-4.46738,-83.2263,-113.511,-111.102,-30.287,-109.054,-139.337,-113.511,-139.337 dDocent_Contig_2105 25 . A T 36.0167 . AB=0.125;ABP=42.0968;AC=1;AF=0.166667;AN=6;AO=5;CIGAR=1X;DP=73;DPB=73;DPRA=2.81818;EPP=13.8677;EPPR=150.67;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=204;QR=2638;RO=68;RPL=0;RPP=13.8677;RPPR=150.67;RPR=5;RUN=1;SAF=5;SAP=13.8677;SAR=0;SRF=68;SRP=150.67;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:30:29,1:29:1123:1:41:0,-4.93633,-97.2547 0/1:32:28,4:28:1079:4:163:-5.42547,0,-87.7558 0/0:11:11,0:11:436:0:0:0,-3.31133,-39.59 dDocent_Contig_2106 111 . C T 37.1193 . AB=0.166667;ABP=26.1727;AC=1;AF=0.166667;AN=6;AO=4;CIGAR=1X;DP=49;DPB=49;DPRA=1.92;EPP=11.6962;EPPR=100.727;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=138;QR=1538;RO=45;RPL=0;RPP=11.6962;RPPR=100.727;RPR=4;RUN=1;SAF=0;SAP=11.6962;SAR=4;SRF=0;SRP=100.727;SRR=45;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:19:19,0:19:647:0:0:0,-5.71957,-58.5501 0/0:6:6,0:6:200:0:0:0,-1.80618,-18.3269 0/1:24:20,4:20:691:4:138:-5.53573,0,-55.2877 dDocent_Contig_2107 14 . C A 40.418 . AB=0.162162;ABP=39.6906;AC=2;AF=0.333333;AN=6;AO=7;CIGAR=1M6I5M2X;DP=56;DPB=61.25;DPRA=0;EPP=18.2106;EPPR=105.07;GTI=0;LEN=1;MEANALT=1.66667;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=233;QR=1745;RO=47;RPL=0;RPP=18.2106;RPPR=105.07;RPR=7;RUN=1;SAF=7;SAP=18.2106;SAR=0;SRF=47;SRP=105.07;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|0:19:17,1:17:620:1:32:0,-2.55412,-52.9103 0|1:21:18,3:18:690:3:109:-3.84637,0,-56.1099 0|1:16:12,3:12:435:3:92:-3.71343,0,-34.6021 dDocent_Contig_2108 49 . T A 3473.24 . 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T C 81.9734 . AB=0.0789474;ABP=61.5258;AC=1;AF=0.166667;AN=6;AO=3;CIGAR=1M1X1M;DP=64;DPB=66.3333;DPRA=0.730769;EPP=9.52472;EPPR=120.27;GTI=0;LEN=1;MEANALT=1.5;MQM=60;MQMR=60;NS=3;NUMALT=2;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=122;QR=1988;RO=54;RPL=0;RPP=9.52472;RPPR=120.27;RPR=3;RUN=1;SAF=3;SAP=9.52472;SAR=0;SRF=54;SRP=120.27;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|0:26:24,2,0:24:885:2,0:54,0:0,-2.69886,-74.8298,-7.22472,-75.4319,-79.6803 0|0:19:13,5,1:13:496:5,1:167,40:-9.54944,0,-39.1676,-10.1568,-37.3763,-50.5797 0|1:19:17,0,2:17:607:0,2:0,82:-2.06011,-7.17762,-56.6023,0,-49.8286,-49.2265 dDocent_Contig_2113 71 . T A 38.7675 . AB=0.151515;ABP=37.8197;AC=2;AF=0.333333;AN=6;AO=5;CIGAR=1X;DP=61;DPB=61;DPRA=0.589286;EPP=13.8677;EPPR=124.613;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=180;QR=2007;RO=56;RPL=5;RPP=13.8677;RPPR=124.613;RPR=0;RUN=1;SAF=5;SAP=13.8677;SAR=0;SRF=56;SRP=124.613;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:28:28,0:28:1015:0:0:0,-8.42884,-91.6626 0/1:14:11,3:11:386:3:106:-5.67225,0,-30.8572 0/1:19:17,2:17:606:2:74:-1.30631,0,-49.149 dDocent_Contig_2114 15 . G A 932.542 . AB=0.327273;ABP=31.5158;AC=2;AF=0.333333;AN=6;AO=36;CIGAR=1X;DP=129;DPB=129;DPRA=2.89474;EPP=81.1833;EPPR=204.957;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=1436;QR=3719;RO=93;RPL=0;RPP=81.1833;RPPR=204.957;RPR=36;RUN=1;SAF=36;SAP=81.1833;SAR=0;SRF=93;SRP=204.957;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:90:59,31:59:2366:31:1237:-84.509,0,-186.006 0/1:20:15,5:15:592:5:199:-12.2681,0,-47.5968 0/0:19:19,0:19:761:0:0:0,-5.71957,-68.814 dDocent_Contig_2115 34 . G C 246.226 . AB=0.235294;ABP=34.0496;AC=2;AF=0.333333;AN=6;AO=12;CIGAR=1X;DP=99;DPB=99;DPRA=0.53125;EPP=29.068;EPPR=191.928;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=475;QR=3452;RO=87;RPL=0;RPP=29.068;RPPR=191.928;RPR=12;RUN=1;SAF=12;SAP=29.068;SAR=0;SRF=87;SRP=191.928;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:28:20,8:20:783:8:315:-20.2854,0,-62.361 0/0:48:48,0:48:1910:0:0:0,-14.4494,-172.1 0/1:23:19,4:19:759:4:160:-7.86011,0,-61.7051 dDocent_Contig_2116 25 . A T 240.647 . AB=0.0535714;ABP=196.892;AC=0;AF=0;AN=6;AO=10;CIGAR=1X1M1X;DP=261;DPB=261;DPRA=0;EPP=24.725;EPPR=504.62;GTI=0;LEN=1;MEANALT=2.33333;MQM=60;MQMR=60;NS=3;NUMALT=2;ODDS=1.38778e-17;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=400;QR=9174;RO=231;RPL=0;RPP=24.725;RPPR=504.62;RPR=10;RUN=1;SAF=10;SAP=24.725;SAR=0;SRF=231;SRP=504.62;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|0:149:142,4,2:142:5671:4,2:160,82:0,-29.5722,-495.424,-35.9758,-489.86,-502.437 0|0:33:24,3,6:24:945:3,6:117,232:-11.8241,-9.43111,-86.2665,0,-68.12,-75.93 0|0:79:65,3,11:65:2558:3,11:123,430:-15.7635,-25.1741,-234.683,0,-200.241,-207.083 dDocent_Contig_2119 58 . C A 1463.82 . AB=0.29064;ABP=80.2955;AC=3;AF=0.5;AN=6;AO=59;CIGAR=1X;DP=203;DPB=203;DPRA=0;EPP=131.127;EPPR=313.531;GTI=0;LEN=1;MEANALT=1.33333;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=2354;QR=5666;RO=143;RPL=59;RPP=131.127;RPPR=313.531;RPR=0;RUN=1;SAF=59;SAP=131.127;SAR=0;SRF=143;SRP=313.531;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:78:47,31:47:1852:31:1251:-89.3795,0,-143.406 0/1:57:39,17:39:1545:17:672:-43.8546,0,-122.35 0/1:68:57,11:57:2269:11:431:-18.6712,0,-183.909 dDocent_Contig_2120 98 . N A 258.229 . AB=0;ABP=0;AC=4;AF=1;AN=4;AO=8;CIGAR=1X;DP=8;DPB=8;DPRA=0;EPP=20.3821;EPPR=0;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=0;NS=2;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=276;QR=0;RO=0;RPL=8;RPP=20.3821;RPPR=0;RPR=0;RUN=1;SAF=8;SAP=20.3821;SAR=0;SRF=0;SRP=0;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 1/1:5:0,5:0:0:5:172:-15.8185,-1.50515,0 ./.:.:.:.:.:.:.:. 1/1:3:0,3:0:0:3:104:-9.70309,-0.90309,0 dDocent_Contig_2123 28 . T A 203.349 . AB=0.183333;ABP=55.2704;AC=2;AF=0.333333;AN=6;AO=15;CIGAR=2X;DP=119;DPB=119;DPRA=0;EPP=35.5824;EPPR=228.843;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=0;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=608;QR=4131;RO=104;RPL=0;RPP=35.5824;RPPR=228.843;RPR=15;RUN=1;SAF=15;SAP=35.5824;SAR=0;SRF=104;SRP=228.843;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|0:59:55,4:55:2170:4:161:0,-2.88549,-180.611 0|1:11:10,1:10:394:1:41:-0.783237,0,-32.5049 0|1:49:39,10:39:1567:10:406:-22.1501,0,-126.516 dDocent_Contig_2124 36 . G A 39.2136 . AB=0.157895;ABP=22.325;AC=1;AF=0.166667;AN=6;AO=3;CIGAR=1X;DP=68;DPB=68;DPRA=0.77551;EPP=9.52472;EPPR=144.156;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=123;QR=2497;RO=65;RPL=0;RPP=9.52472;RPPR=144.156;RPR=3;RUN=1;SAF=3;SAP=9.52472;SAR=0;SRF=65;SRP=144.156;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:31:31,0:31:1195:0:0:0,-9.33193,-107.84 0/0:18:18,0:18:692:0:0:0,-5.41854,-62.6125 0/1:19:16,3:16:610:3:123:-5.74522,0,-49.5149 dDocent_Contig_2126 44 . T A 1522.25 . AB=0.139535;ABP=51.5402;AC=0;AF=0;AN=6;AO=6;CIGAR=1M2D4M1X11M;DP=136;DPB=130.842;DPRA=0;EPP=16.0391;EPPR=105.07;GTI=0;LEN=1;MEANALT=4;MQM=60;MQMR=60;NS=3;NUMALT=4;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=224;QR=1761;RO=47;RPL=0;RPP=16.0391;RPPR=105.07;RPR=6;RUN=1;SAF=6;SAP=16.0391;SAR=0;SRF=47;SRP=105.07;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|0:75:28,0,29,17,0:28:1054:0,29,17,0:0,1155,653,0:-86.6878,-95.1166,-181.473,0,-86.3579,-77.628,-41.5239,-127.877,-32.7576,-122.759,-95.1166,-181.473,-86.3579,-127.877,-181.473 0|0:18:7,0,7,4,0:7:266:0,7,4,0:0,267,149,0:-19.7986,-21.9059,-43.722,0,-21.8203,-19.713,-9.71442,-31.5292,-9.62833,-30.3251,-21.9059,-43.722,-21.8203,-31.5292,-43.722 0|0:43:12,6,17,5,3:12:441:6,17,5,3:224,667,162,105:-51.2612,-36.5368,-70.7816,0,-17.7194,-30.9432,-41.8165,-59.5286,-23.0023,-76.3594,-46.335,-64.0486,-27.5206,-69.3258,-81.4823 dDocent_Contig_2128 20 . C G 878.589 . AB=0.195652;ABP=151.048;AC=1;AF=0.166667;AN=6;AO=37;CIGAR=2X;DP=209;DPB=209;DPRA=0;EPP=83.3548;EPPR=322.217;GTI=0;LEN=1;MEANALT=2.66667;MQM=60;MQMR=60;NS=3;NUMALT=2;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=1472;QR=5883;RO=147;RPL=0;RPP=83.3548;RPPR=322.217;RPR=37;RUN=1;SAF=37;SAP=83.3548;SAR=0;SRF=147;SRP=322.217;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|1:106:64,29,9:64:2571:29,9:1157,366:-76.0108,0,-203.119,-65.0857,-181.658,-274.231 0|0:25:24,1,0:24:950:1,0:41,0:0,-3.43118,-81.7085,-7.22472,-82.0095,-85.3941 0|0:78:59,7,10:59:2362:7,10:274,402:-15.3709,-10.608,-203.078,0,-172.058,-191.575 dDocent_Contig_2129 53 . G A 5197.21 . AB=0.70082;ABP=88.4809;AC=3;AF=0.5;AN=6;AO=171;CIGAR=1X;DP=244;DPB=244;DPRA=0;EPP=374.332;EPPR=152.842;GTI=0;LEN=1;MEANALT=2;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=0.964912;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=6645;QR=2661;RO=69;RPL=171;RPP=374.332;RPPR=152.842;RPR=0;RUN=1;SAF=171;SAP=374.332;SAR=0;SRF=69;SRP=152.842;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:148:45,101:45:1735:101:3923:-308.766,0,-112.033 0/1:30:14,15:14:527:15:585:-43.8693,0,-38.6361 0/1:66:10,55:10:399:55:2137:-172.608,0,-16.3487 dDocent_Contig_2130 86 . G A 60.2671 . AB=0.145833;ABP=55.3066;AC=1;AF=0.166667;AN=6;AO=7;CIGAR=1X;DP=150;DPB=150;DPRA=0.941176;EPP=18.2106;EPPR=313.531;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=244;QR=4852;RO=143;RPL=7;RPP=18.2106;RPPR=313.531;RPR=0;RUN=1;SAF=7;SAP=18.2106;SAR=0;SRF=143;SRP=313.531;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:73:73,0:73:2461:0:0:0,-21.9752,-221.749 0/0:29:29,0:29:977:0:0:0,-8.72987,-88.237 0/1:48:41,7:41:1414:7:244:-7.85062,0,-113.109 dDocent_Contig_2131 24 . A G 1217.51 . AB=0.246575;ABP=125.178;AC=3;AF=0.5;AN=6;AO=54;CIGAR=1X;DP=219;DPB=219;DPRA=0;EPP=120.27;EPPR=344.142;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=1.38778e-17;PAIRED=1;PAIREDR=0.987879;PAO=0;PQA=0;PQR=0;PRO=0;QA=2136;QR=6568;RO=165;RPL=0;RPP=120.27;RPPR=361.303;RPR=54;RUN=1;SAF=54;SAP=120.27;SAR=0;SRF=163;SRP=344.142;SRR=2;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:119:100,19:100:3970:19:742:-31.2732,0,-321.477 0/1:30:20,10:20:791:10:384:-25.879,0,-62.4722 0/1:70:45,25:45:1807:25:1010:-70.1219,0,-141.769 dDocent_Contig_2132 200 . C T 930.65 . AB=0.4375;ABP=5.72464;AC=2;AF=0.333333;AN=6;AO=36;CIGAR=1X;DP=93;DPB=93;DPRA=0;EPP=81.1833;EPPR=126.784;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=1363;QR=2155;RO=57;RPL=36;RPP=81.1833;RPPR=126.784;RPR=0;RUN=1;SAF=0;SAP=81.1833;SAR=36;SRF=0;SRP=126.784;SRR=57;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:71:37,34:37:1379:34:1285:-94.5649,0,-103.014 0/1:9:8,1:8:310:1:39:-1.18729,0,-25.5543 0/0:13:12,1:12:466:1:39:0,-0.0168255,-38.3955 dDocent_Contig_2133 43 . T C 48.7096 . AB=0.214286;ABP=12.937;AC=1;AF=0.166667;AN=6;AO=3;CIGAR=1X;DP=46;DPB=46;DPRA=0.875;EPP=9.52472;EPPR=96.3836;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=117;QR=1722;RO=43;RPL=0;RPP=9.52472;RPPR=96.3836;RPR=3;RUN=1;SAF=3;SAP=9.52472;SAR=0;SRF=43;SRP=96.3836;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:16:16,0:16:646:0:0:0,-4.81648,-58.4743 0/1:14:11,3:11:441:3:117:-6.69487,0,-35.831 0/0:16:16,0:16:635:0:0:0,-4.81648,-57.4866 dDocent_Contig_2134 27 . A G 547.487 . AB=0.381818;ABP=9.68264;AC=3;AF=0.5;AN=6;AO=21;CIGAR=1X1M;DP=55;DPB=55;DPRA=0;EPP=48.6112;EPPR=72.4974;GTI=0;LEN=1;MEANALT=1.33333;MQM=60;MQMR=60;NS=3;NUMALT=2;ODDS=0;PAIRED=0.857143;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=839;QR=1269;RO=32;RPL=0;RPP=48.6112;RPPR=72.4974;RPR=21;RUN=1;SAF=21;SAP=48.6112;SAR=0;SRF=32;SRP=72.4974;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|1:22:14,2,6:14:568:2,6:79,241:-15.6496,-13.3647,-59.6082,0,-40.3524,-45.0458 0|1:14:9,0,5:9:341:0,5:0,201:-14.2565,-16.9657,-44.9026,0,-28.3302,-26.825 0|1:19:9,0,10:9:360:0,10:0,397:-30.3655,-33.0747,-62.7308,0,-30.0542,-27.0439 dDocent_Contig_2135 23 . G A 58.2134 . AB=0.142857;ABP=41.7866;AC=1;AF=0.166667;AN=6;AO=6;CIGAR=1X;DP=138;DPB=138;DPRA=0.968085;EPP=16.0391;EPPR=289.645;GTI=0;LEN=1;MEANALT=1;MQM=55;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=0.166667;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=237;QR=5242;RO=132;RPL=0;RPP=16.0391;RPPR=289.645;RPR=6;RUN=1;SAF=6;SAP=16.0391;SAR=0;SRF=132;SRP=289.645;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:47:47,0:47:1885:0:0:0,-14.1484,-169.854 0/0:56:55,1:55:2174:1:38:0,-13.0604,-192.037 0/1:35:30,5:30:1183:5:199:-7.64525,0,-96.2107 dDocent_Contig_2136 20 . C T 492.135 . AB=0.205357;ABP=87.4651;AC=1;AF=0.166667;AN=6;AO=26;CIGAR=1X;DP=195;DPB=195;DPRA=0;EPP=59.4686;EPPR=369.989;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=59.716;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=1046;QR=6689;RO=169;RPL=0;RPP=59.4686;RPPR=369.989;RPR=26;RUN=1;SAF=26;SAP=59.4686;SAR=0;SRF=169;SRP=369.989;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:112:89,23:89:3534:23:935:-50.7352,0,-281.773 0/0:23:21,2:21:834:2:72:0,-0.0884475,-68.5402 0/0:60:59,1:59:2321:1:39:0,-14.1652,-205.154 dDocent_Contig_2137 7 . G A 1867.58 . AB=0.310484;ABP=80.3778;AC=2;AF=0.333333;AN=6;AO=77;CIGAR=1X;DP=266;DPB=266;DPRA=6.88889;EPP=170.214;EPPR=406.904;GTI=0;LEN=1;MEANALT=2;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=0.989247;PAO=0;PQA=0;PQR=0;PRO=0;QA=2931;QR=6184;RO=186;RPL=0;RPP=170.214;RPPR=406.904;RPR=77;RUN=1;SAF=77;SAP=170.214;SAR=0;SRF=186;SRP=406.904;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:149:94,53:94:3128:53:2027:-138.227,0,-237.257 0/0:18:18,0:18:678:0:0:0,-5.41854,-61.3507 0/1:99:74,24:74:2378:24:904:-52.0542,0,-184.62 dDocent_Contig_2138 45 . A G 128.082 . AB=0.285714;ABP=11.386;AC=2;AF=0.333333;AN=6;AO=8;CIGAR=1X;DP=63;DPB=63;DPRA=0;EPP=20.3821;EPPR=122.441;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=322;QR=2195;RO=55;RPL=0;RPP=20.3821;RPPR=122.441;RPR=8;RUN=1;SAF=8;SAP=20.3821;SAR=0;SRF=55;SRP=122.441;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:42:40,2:40:1595:2:79:0,-5.14602,-136.288 0/1:9:6,3:6:237:3:120:-8.47863,0,-18.9911 0/1:12:9,3:9:363:3:123:-7.85243,0,-29.4214 dDocent_Contig_2141 15 . A C 112.809 . AB=0.3125;ABP=7.89611;AC=1;AF=0.166667;AN=6;AO=5;CIGAR=1X;DP=83;DPB=83;DPRA=0.477612;EPP=13.8677;EPPR=172.385;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=195;QR=3097;RO=78;RPL=0;RPP=13.8677;RPPR=172.385;RPR=5;RUN=1;SAF=5;SAP=13.8677;SAR=0;SRF=78;SRP=172.385;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:41:41,0:41:1639:0:0:0,-12.3422,-147.74 0/0:26:26,0:26:1024:0:0:0,-7.82678,-92.4575 0/1:16:11,5:11:434:5:195:-13.1048,0,-34.598 dDocent_Contig_2142 135 . A G 8840.23 . AB=0;ABP=0;AC=6;AF=1;AN=6;AO=298;CIGAR=1X;DP=324;DPB=324;DPRA=0;EPP=650.109;EPPR=57.2971;GTI=0;LEN=1;MEANALT=1.33333;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=1.38778e-17;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=10724;QR=902;RO=25;RPL=0;RPP=650.109;RPPR=57.2971;RPR=298;RUN=1;SAF=0;SAP=650.109;SAR=298;SRF=0;SRP=57.2971;SRR=25;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 1/1:150:10,140:10:367:140:5037:-420.069,-11.7761,0 1/1:71:6,64:6:204:64:2276:-186.435,-2.48052,0 1/1:103:9,94:9:331:94:3411:-277.042,-0.865383,0 dDocent_Contig_2143 7 . T G 69036.5 . AB=0;ABP=0;AC=6;AF=1;AN=6;AO=2407;CIGAR=1X;DP=2479;DPB=2479;DPRA=0;EPP=5229.74;EPPR=122.441;GTI=0;LEN=1;MEANALT=2.66667;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=77476;QR=739;RO=55;RPL=0;RPP=5229.74;RPPR=122.441;RPR=2407;RUN=1;SAF=2407;SAP=5229.74;SAR=0;SRF=55;SRP=122.441;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 1/1:1501:31,1461:31:397:1461:46659:-4161.61,-413.428,0 1/1:279:4,274:4:58:274:9339:-834.978,-78.5025,0 1/1:699:20,672:20:284:672:21478:-1906.58,-182.78,0 dDocent_Contig_2144 27 . T C 2157.55 . AB=0.315985;ABP=82.1278;AC=3;AF=0.5;AN=6;AO=85;CIGAR=1X;DP=269;DPB=269;DPRA=0;EPP=187.585;EPPR=402.561;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=1.38778e-17;PAIRED=1;PAIREDR=0.967391;PAO=0;PQA=0;PQR=0;PRO=0;QA=3349;QR=7274;RO=184;RPL=0;RPP=187.585;RPPR=402.561;RPR=85;RUN=1;SAF=85;SAP=187.585;SAR=0;SRF=184;SRP=402.561;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:110:74,36:74:2928:36:1396:-92.7736,0,-230.501 0/1:75:50,25:50:1976:25:995:-67.2721,0,-155.465 0/1:84:60,24:60:2370:24:958:-61.2317,0,-188.173 dDocent_Contig_2145 25 . C T 866.605 . AB=0.169492;ABP=282.909;AC=3;AF=0.5;AN=6;AO=50;CIGAR=1X;DP=295;DPB=295;DPRA=0;EPP=111.584;EPPR=535.021;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=1.38778e-17;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=2000;QR=9784;RO=245;RPL=0;RPP=111.584;RPPR=535.021;RPR=50;RUN=1;SAF=50;SAP=111.584;SAR=0;SRF=245;SRP=535.021;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:161:141,20:141:5698:20:805:-24.3013,0,-464.135 0/1:51:34,17:34:1355:17:673:-45.542,0,-106.86 0/1:83:70,13:70:2731:13:522:-22.3401,0,-220.911 dDocent_Contig_2147 14 . T C 7806.48 . AB=0.791531;ABP=229.643;AC=3;AF=0.5;AN=6;AO=243;CIGAR=1X;DP=307;DPB=307;DPRA=0;EPP=530.678;EPPR=141.985;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=0.987654;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=9760;QR=2567;RO=64;RPL=0;RPP=530.678;RPPR=141.985;RPR=243;RUN=1;SAF=243;SAP=530.678;SAR=0;SRF=64;SRP=141.985;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:203:52,151:52:2083:151:6056:-483.69,0,-126.546 0/1:27:5,22:5:200:22:876:-71.0172,0,-10.2517 0/1:77:7,70:7:284:70:2828:-231.439,0,-2.75468 dDocent_Contig_2148 114 . G C 133.426 . AB=0.28;ABP=13.5202;AC=1;AF=0.166667;AN=6;AO=7;CIGAR=1X;DP=51;DPB=51;DPRA=1.92308;EPP=18.2106;EPPR=98.5551;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=245;QR=1509;RO=44;RPL=0;RPP=18.2106;RPPR=98.5551;RPR=7;RUN=1;SAF=0;SAP=18.2106;SAR=7;SRF=0;SRP=98.5551;SRR=44;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:25:18,7:18:610:7:245:-14.8655,0,-47.6939 0/0:18:18,0:18:620:0:0:0,-5.41854,-56.1239 0/0:8:8,0:8:279:0:0:0,-2.40824,-25.449 dDocent_Contig_2149 10 . C A 4851.27 . AB=0.0666667;ABP=247.663;AC=0;AF=0;AN=6;AO=10;CIGAR=1X1M2X;DP=216;DPB=216;DPRA=0;EPP=24.725;EPPR=79.0118;GTI=0;LEN=1;MEANALT=3.5;MQM=49;MQMR=60;NS=3;NUMALT=3;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=367;QR=1398;RO=35;RPL=0;RPP=24.725;RPPR=79.0118;RPR=10;RUN=1;SAF=10;SAP=24.725;SAR=0;SRF=35;SRP=79.0118;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|0:96:22,7,1,64:22:885:7,1,64:280,41,2491:-198.047,-181.909,-252.741,-201.286,-251.464,-273.923,0,-50.1803,-69.5548,-53.6733 0|0:66:8,0,5,49:8:315:0,5,49:0,196,1868:-150.743,-153.151,-179.067,-138.66,-164.576,-163.071,0,-25.9229,-11.4412,-11.1724 0|0:54:5,3,0,45:5:198:3,0,45:87,0,1744:-141.838,-136.455,-151.85,-143.343,-152.753,-159.641,0,-9.48906,-16.3513,-2.805 dDocent_Contig_2150 181 . G A 47.1422 . AB=0.142857;ABP=34.0313;AC=1;AF=0.166667;AN=6;AO=4;CIGAR=1X;DP=124;DPB=124;DPRA=0.583333;EPP=11.6962;EPPR=263.587;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=162;QR=4773;RO=120;RPL=4;RPP=11.6962;RPPR=263.587;RPR=0;RUN=1;SAF=0;SAP=11.6962;SAR=4;SRF=0;SRP=263.587;SRR=120;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:86:86,0:86:3417:0:0:0,-25.8886,-307.559 0/0:10:10,0:10:387:0:0:0,-3.0103,-35.1779 0/1:28:24,4:24:969:4:162:-6.53812,0,-79.0793 dDocent_Contig_2151 48 . G A 6832.49 . AB=0.795745;ABP=181.542;AC=4;AF=0.666667;AN=6;AO=214;CIGAR=1X2M5D1M;DP=263;DPB=144.111;DPRA=0;EPP=467.705;EPPR=109.412;GTI=0;LEN=1;MEANALT=1;MQM=59.9252;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=8454;QR=1828;RO=49;RPL=214;RPP=467.705;RPPR=109.412;RPR=0;RUN=1;SAF=214;SAP=467.705;SAR=0;SRF=49;SRP=109.412;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|1:168:36,132:36:1340:132:5221:-419.206,0,-70.3201 1|1:28:1,27:1:37:27:1071:-92.9881,-4.73101,0 0|1:67:12,55:12:451:55:2162:-174.578,0,-20.7691 dDocent_Contig_2153 122 . T C 4207.57 . AB=0.868613;ABP=164.698;AC=4;AF=0.666667;AN=6;AO=157;CIGAR=1X;DP=177;DPB=177;DPRA=0;EPP=343.931;EPPR=46.4397;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=5237;QR=683;RO=20;RPL=0;RPP=343.931;RPPR=46.4397;RPR=157;RUN=1;SAF=0;SAP=343.931;SAR=157;SRF=0;SRP=46.4397;SRR=20;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:77:10,67:10:341:67:2249:-179.496,0,-7.8412 1/1:40:2,38:2:70:38:1254:-106.504,-5.3938,0 0/1:60:8,52:8:272:52:1734:-138.279,0,-6.74983 dDocent_Contig_2154 15 . G A 2846.46 . AB=0.239252;ABP=318.953;AC=3;AF=0.5;AN=6;AO=128;CIGAR=1X;DP=535;DPB=535;DPRA=0;EPP=280.959;EPPR=886.8;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=5006;QR=15946;RO=407;RPL=0;RPP=280.959;RPPR=886.8;RPR=128;RUN=1;SAF=128;SAP=280.959;SAR=0;SRF=407;SRP=886.8;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:346:261,85:261:10237:85:3326:-195.256,0,-816.586 0/1:65:51,14:51:1973:14:527:-28.1934,0,-158.214 0/1:124:95,29:95:3736:29:1153:-66.7201,0,-298.937 dDocent_Contig_2156 12 . G A 44.8462 . AB=0.116667;ABP=79.5909;AC=2;AF=0.333333;AN=6;AO=7;CIGAR=1X;DP=77;DPB=77;DPRA=1.76471;EPP=18.2106;EPPR=155.013;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=280;QR=2756;RO=70;RPL=0;RPP=18.2106;RPPR=155.013;RPR=7;RUN=1;SAF=7;SAP=18.2106;SAR=0;SRF=70;SRP=155.013;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:20:18,2:18:712:2:81:-1.66513,0,-58.3866 0/1:40:35,5:35:1364:5:199:-6.24624,0,-110.975 0/0:17:17,0:17:680:0:0:0,-5.11751,-61.5297 dDocent_Contig_2158 21 . A G 156.861 . AB=0.172414;ABP=30.0414;AC=0;AF=0;AN=6;AO=5;CIGAR=1X1M1X3M;DP=190;DPB=189;DPRA=0;EPP=13.8677;EPPR=352.617;GTI=0;LEN=1;MEANALT=2;MQM=60;MQMR=60;NS=3;NUMALT=3;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=192;QR=6345;RO=161;RPL=0;RPP=13.8677;RPPR=352.617;RPR=5;RUN=1;SAF=5;SAP=13.8677;SAR=0;SRF=161;SRP=352.617;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|0:124:112,0,0,12:112:4410:0,0,12:0,0,466:-4.96432,-38.6797,-401.461,-38.6797,-401.461,-401.461,0,-363.17,-363.17,-359.558 0|0:29:18,5,0,6:18:719:5,0,6:192,0,227:-13.1861,-2.84281,-60.5747,-18.6047,-62.0798,-77.8374,0,-43.4773,-59.2333,-57.4271 0|0:37:31,0,2,4:31:1216:0,2,4:0,75,151:-3.04534,-12.3773,-112.387,-6.2348,-106.245,-105.643,0,-100.013,-93.8708,-98.809 dDocent_Contig_2159 7 . G A 31153 . AB=0.0556338;ABP=2438.49;AC=0;AF=0;AN=6;AO=79;CIGAR=1X1M1X;DP=1420;DPB=1420;DPRA=0;EPP=174.557;EPPR=378.675;GTI=0;LEN=1;MEANALT=6;MQM=52.8861;MQMR=59.0116;NS=3;NUMALT=2;ODDS=0;PAIRED=0.898734;PAIREDR=0.907514;PAO=0;PQA=0;PQR=0;PRO=0;QA=2996;QR=5861;RO=173;RPL=0;RPP=174.557;RPPR=378.675;RPR=79;RUN=1;SAF=79;SAP=174.557;SAR=0;SRF=173;SRP=378.675;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|0:509:44,35,413:44:1563:35,413:1340,15024:-1159.63,-1069.32,-1186.13,0,-23.7915,-3.02961 0|0:368:69,18,260:69:2358:18,260:676,9522:-733.586,-700.337,-885.415,0,-136.484,-112.241 0|0:543:60,26,436:60:1940:26,436:980,15735:-1227.6,-1171.87,-1320.37,0,-82.5275,-25.0825 dDocent_Contig_2160 29 . A G 2792.12 . AB=0.630137;ABP=24.4871;AC=3;AF=0.5;AN=6;AO=92;CIGAR=1X;DP=146;DPB=146;DPRA=0;EPP=202.786;EPPR=120.27;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=3643;QR=2139;RO=54;RPL=0;RPP=202.786;RPPR=120.27;RPR=92;RUN=1;SAF=92;SAP=202.786;SAR=0;SRF=54;SRP=120.27;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:72:25,47:25:993:47:1870:-146.833,0,-67.9963 0/1:46:24,22:24:955:22:872:-64.9428,0,-72.4045 0/1:28:5,23:5:191:23:901:-72.9587,0,-9.12762 dDocent_Contig_2163 117 . G T 214.416 . AB=0.333333;ABP=10.9724;AC=1;AF=0.166667;AN=6;AO=11;CIGAR=1X;DP=55;DPB=55;DPRA=3;EPP=26.8965;EPPR=98.5551;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=362;QR=1487;RO=44;RPL=0;RPP=26.8965;RPPR=98.5551;RPR=11;RUN=1;SAF=0;SAP=26.8965;SAR=11;SRF=0;SRP=98.5551;SRR=44;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:33:22,11:22:730:11:362:-22.9645,0,-56.0732 0/0:8:8,0:8:278:0:0:0,-2.40824,-25.358 0/0:14:14,0:14:479:0:0:0,-4.21442,-43.4363 dDocent_Contig_2164 112 . C T 1081.45 . AB=0.432432;ABP=5.94472;AC=4;AF=0.666667;AN=6;AO=44;CIGAR=1X;DP=86;DPB=86;DPRA=0;EPP=98.5551;EPPR=92.0407;GTI=0;LEN=1;MEANALT=1.33333;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=1478;QR=1369;RO=41;RPL=0;RPP=98.5551;RPPR=92.0407;RPR=44;RUN=1;SAF=0;SAP=98.5551;SAR=44;SRF=0;SRP=92.0407;SRR=41;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:59:35,23:35:1161:23:766:-51.4486,0,-86.9863 0/1:15:6,9:6:208:9:302:-22.991,0,-14.5441 1/1:12:0,12:0:0:12:410:-37.2287,-3.61236,0 dDocent_Contig_2166 51 . G A 67.0385 . AB=0.166667;ABP=31.9633;AC=1;AF=0.166667;AN=6;AO=5;CIGAR=1X;DP=86;DPB=86;DPRA=1.07143;EPP=13.8677;EPPR=178.9;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=191;QR=3084;RO=81;RPL=5;RPP=13.8677;RPPR=178.9;RPR=0;RUN=1;SAF=5;SAP=13.8677;SAR=0;SRF=81;SRP=178.9;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:27:27,0:27:1069:0:0:0,-8.12781,-96.5019 0/0:29:29,0:29:1066:0:0:0,-8.72987,-96.2371 0/1:30:25,5:25:949:5:191:-8.52776,0,-76.6932 dDocent_Contig_2167 8 . T A 16792.6 . AB=0.39745;ABP=167.797;AC=3;AF=0.5;AN=6;AO=717;CIGAR=1X;DP=1804;DPB=1804;DPRA=0;EPP=1559.96;EPPR=2354.71;GTI=0;LEN=1;MEANALT=1.33333;MQM=59.6444;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=0.930265;PAIREDR=0.99723;PAO=0;PQA=0;PQR=0;PRO=0;QA=24761;QR=36978;RO=1083;RPL=0;RPP=1559.96;RPPR=2354.71;RPR=717;RUN=1;SAF=717;SAP=1559.96;SAR=0;SRF=1083;SRP=2354.71;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:292:173,119:173:5622:119:4021:-273.929,0,-418.123 0/1:1074:679,391:679:23669:391:13773:-916.159,0,-1806.8 0/1:438:231,207:231:7687:207:6967:-494.691,0,-559.921 dDocent_Contig_2168 98 . N A 709.343 . AB=0;ABP=0;AC=6;AF=1;AN=6;AO=24;CIGAR=1X;DP=24;DPB=24;DPRA=0;EPP=55.1256;EPPR=0;GTI=0;LEN=1;MEANALT=1;MQM=59.4167;MQMR=0;NS=3;NUMALT=1;ODDS=0;PAIRED=0.958333;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=772;QR=0;RO=0;RPL=24;RPP=55.1256;RPPR=0;RPR=0;RUN=1;SAF=24;SAP=55.1256;SAR=0;SRF=0;SRP=0;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 1/1:3:0,3:0:0:3:99:-9.23712,-0.90309,0 1/1:3:0,3:0:0:3:67:-6.25192,-0.90309,0 1/1:18:0,18:0:0:18:606:-54.843,-5.41854,0 dDocent_Contig_2171 98 . N T 66.4848 . AB=0;ABP=0;AC=2;AF=1;AN=2;AO=2;CIGAR=2X;DP=2;DPB=2;DPRA=0;EPP=7.35324;EPPR=0;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=0;NS=1;NUMALT=1;ODDS=5.99146;PAIRED=1;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=70;QR=0;RO=0;RPL=2;RPP=7.35324;RPPR=0;RPR=0;RUN=1;SAF=2;SAP=7.35324;SAR=0;SRF=0;SRP=0;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 1|1:2:0,2:0:0:2:70:-6.6474,-0.60206,0 .:.:.:.:.:.:.:. .:.:.:.:.:.:.:. dDocent_Contig_2172 44 . T G 225.215 . AB=0.130435;ABP=166.72;AC=3;AF=0.5;AN=6;AO=18;CIGAR=1X1M;DP=138;DPB=138;DPRA=0;EPP=33.8935;EPPR=224.5;GTI=0;LEN=1;MEANALT=2.33333;MQM=60;MQMR=60;NS=3;NUMALT=2;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=644;QR=3577;RO=102;RPL=1;RPP=33.8935;RPPR=224.5;RPR=17;RUN=1;SAF=18;SAP=42.0968;SAR=0;SRF=102;SRP=224.5;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|1:59:48,6,4:48:1674:6,4:226,150:-4.08408,0,-134.327,-6.24226,-123.845,-141.164 0|1:30:18,5,7:18:638:5,7:192,263:-16.1231,-5.77702,-56.2276,0,-36.1804,-49.8407 0|1:49:36,6,7:36:1265:6,7:217,231:-7.81929,-0.927894,-102.102,0,-85.2378,-100.846 dDocent_Contig_2173 8 . A T 3916.5 . AB=0.243478;ABP=68.7398;AC=2;AF=0.333333;AN=6;AO=28;CIGAR=1X3M1X;DP=152;DPB=152;DPRA=0;EPP=63.8115;EPPR=37.7539;GTI=0;LEN=1;MEANALT=2;MQM=60;MQMR=60;NS=3;NUMALT=2;ODDS=0;PAIRED=0.964286;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=1018;QR=593;RO=16;RPL=0;RPP=63.8115;RPPR=37.7539;RPR=28;RUN=1;SAF=28;SAP=63.8115;SAR=0;SRF=16;SRP=37.7539;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 1|0:61:4,20,37:4:146:20,37:718,1445:-164.217,-106.879,-112.781,-46.6219,0,-47.4104 0|0:37:6,0,31:6:229:0,31:0,1232:-100.018,-101.824,-120.609,0,-19.1692,-9.83722 1|0:54:6,8,40:6:218:8,40:300,1557:-132.937,-110.176,-125.562,-6.78425,0,-12.5359 dDocent_Contig_2174 39 . T A 1831.11 . AB=0.0375;ABP=597.559;AC=0;AF=0;AN=6;AO=12;CIGAR=1M1I1M1X1M2X1M2X1M2X;DP=320;DPB=280.583;DPRA=0;EPP=29.068;EPPR=441.648;GTI=0;LEN=1;MEANALT=4.33333;MQM=59.9167;MQMR=60;NS=3;NUMALT=3;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=455;QR=7931;RO=202;RPL=0;RPP=29.068;RPPR=441.648;RPR=12;RUN=1;SAF=12;SAP=29.068;SAR=0;SRF=202;SRP=441.648;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|0:179:108,3,11,55:108:4242:3,11,55:120,437,2123:-141.808,-164.435,-512.426,-138.34,-477.351,-483.924,0,-339.002,-312.908,-332.329 0|0:51:31,2,4,13:31:1207:2,4,13:77,155,473:-29.2981,-32.3049,-130.919,-25.8902,-118.787,-123.906,0,-92.9031,-86.4921,-95.3123 0|0:90:63,7,7,12:63:2482:7,7,12:258,269,446:-17.5277,-15.3976,-217.492,-14.4086,-197.519,-216.508,0,-183.107,-182.122,-200.59 dDocent_Contig_2175 7 . T A 3118.18 . AB=0.411111;ABP=15.3636;AC=5;AF=0.833334;AN=6;AO=74;CIGAR=1X3M;DP=180;DPB=180;DPRA=0;EPP=163.699;EPPR=57.2971;GTI=0;LEN=1;MEANALT=3.66667;MQM=60;MQMR=60;NS=3;NUMALT=4;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=2764;QR=931;RO=25;RPL=0;RPP=163.699;RPPR=57.2971;RPR=74;RUN=1;SAF=74;SAP=163.699;SAR=0;SRF=25;SRP=57.2971;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 1|1:105:8,0,38,37,20:8:302:0,38,37,20:0,1464,1391,770:-207.011,-209.419,-234.17,-89.2033,-113.954,-102.515,-95.4642,-120.215,0,-109.077,-146.215,-170.966,-50.7486,-57.011,-164.945 1|1:28:6,7,1,14,0:6:230:7,1,14,0:268,39,530,0:-44.7567,-24.5681,-41.3397,-43.3565,-40.2405,-61.9339,-3.11542,0,-18.7866,-17.7785,-46.5628,-43.4469,-62.2349,-21.9929,-65.4411 0|1:47:11,3,9,23,1:11:399:3,9,23,1:114,344,843,41:-65.5731,-59.5344,-91.205,-40.6548,-63.8783,-70.5195,0,-23.2161,-4.335,-25.6427,-65.4993,-88.7231,-69.8436,-29.1807,-97.7722 dDocent_Contig_2176 10 . T A 785.041 . AB=0.407407;ABP=9.04217;AC=3;AF=0.5;AN=6;AO=33;CIGAR=1X;DP=81;DPB=81;DPRA=0;EPP=74.6689;EPPR=107.241;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=1194;QR=1697;RO=48;RPL=0;RPP=74.6689;RPPR=107.241;RPR=33;RUN=1;SAF=33;SAP=74.6689;SAR=0;SRF=48;SRP=107.241;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:24:13,11:13:442:11:413:-30.291,0,-32.8677 0/1:28:23,5:23:844:5:141:-4.54019,0,-67.8445 0/1:29:12,17:12:411:17:640:-49.1954,0,-28.582 dDocent_Contig_2177 10 . T C 118.584 . AB=0.135802;ABP=96.33;AC=2;AF=0.333333;AN=6;AO=20;CIGAR=1X;DP=213;DPB=213;DPRA=0;EPP=46.4397;EPPR=422.104;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=772;QR=6724;RO=193;RPL=0;RPP=46.4397;RPPR=422.104;RPR=20;RUN=1;SAF=20;SAP=46.4397;SAR=0;SRF=193;SRP=422.104;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:132:123,9:123:4239:9:351:0,-7.7869,-349.686 0/1:38:31,7:31:1109:7:275:-13.6772,0,-88.671 0/1:43:39,4:39:1376:4:146:-0.548961,0,-111.175 dDocent_Contig_2178 142 . A G 40.9292 . AB=0.148148;ABP=32.0437;AC=1;AF=0.166667;AN=6;AO=4;CIGAR=1X;DP=103;DPB=103;DPRA=0.710526;EPP=11.6962;EPPR=217.986;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=152;QR=3941;RO=99;RPL=0;RPP=11.6962;RPPR=217.986;RPR=4;RUN=1;SAF=0;SAP=11.6962;SAR=4;SRF=0;SRP=217.986;SRR=99;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:43:43,0:43:1713:0:0:0,-12.9443,-154.396 0/0:33:33,0:33:1304:0:0:0,-9.93399,-117.628 0/1:27:23,4:23:924:4:152:-5.9168,0,-75.3363 dDocent_Contig_2179 14 . C T 117.683 . AB=0.141026;ABP=90.3146;AC=3;AF=0.5;AN=6;AO=11;CIGAR=1X;DP=78;DPB=78;DPRA=0;EPP=26.8965;EPPR=148.499;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=432;QR=2654;RO=67;RPL=0;RPP=26.8965;RPPR=148.499;RPR=11;RUN=1;SAF=11;SAP=26.8965;SAR=0;SRF=67;SRP=148.499;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:30:25,5:25:996:5:192:-8.61636,0,-80.9081 0/1:32:29,3:29:1130:3:117:-1.27562,0,-92.3489 0/1:16:13,3:13:528:3:123:-6.64831,0,-43.0504 dDocent_Contig_2180 115 . A C 593.505 . AB=0.5625;ABP=4.6389;AC=3;AF=0.5;AN=6;AO=27;CIGAR=1X;DP=48;DPB=48;DPRA=0;EPP=61.6401;EPPR=48.6112;GTI=0;LEN=1;MEANALT=1;MQM=58.4444;MQMR=60;NS=3;NUMALT=1;ODDS=3.46945e-18;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=871;QR=694;RO=21;RPL=0;RPP=61.6401;RPPR=48.6112;RPR=27;RUN=1;SAF=0;SAP=61.6401;SAR=27;SRF=0;SRP=48.6112;SRR=21;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:24:6,18:6:204:18:572:-44.5531,0,-11.469 0/1:9:7,2:7:212:2:61:-3.07517,0,-16.6665 0/1:15:8,7:8:278:7:238:-17.2331,0,-20.8421 dDocent_Contig_2181 35 . C T 377.021 . AB=0.14433;ABP=216.173;AC=2;AF=0.333333;AN=6;AO=30;CIGAR=1X;DP=229;DPB=229;DPRA=0;EPP=68.1545;EPPR=435.133;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=1181;QR=7744;RO=199;RPL=0;RPP=68.1545;RPPR=435.133;RPR=30;RUN=1;SAF=30;SAP=68.1545;SAR=0;SRF=199;SRP=435.133;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:142:119,23:119:4662:23:899:-38.4722,0,-376.8 0/0:35:33,2:33:1278:2:82:0,-2.75637,-107.519 0/1:52:47,5:47:1804:5:200:-2.72636,0,-146.936 dDocent_Contig_2182 17 . T C 10748.4 . AB=0.8125;ABP=179.442;AC=5;AF=0.833333;AN=6;AO=328;CIGAR=2X3M;DP=384;DPB=384;DPRA=0;EPP=715.253;EPPR=100.727;GTI=0;LEN=1;MEANALT=2.33333;MQM=60;MQMR=60;NS=3;NUMALT=2;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=12919;QR=1644;RO=45;RPL=0;RPP=715.253;RPPR=100.727;RPR=328;RUN=1;SAF=328;SAP=715.253;SAR=0;SRF=45;SRP=100.727;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|1:208:38,0,169:38:1388:0,169:0,6664:-537.01,-548.45,-661.852,0,-113.588,-62.7141 1|1:88:5,1,82:5:182:1,82:41,3221:-273.241,-271.362,-285.925,-9.85655,-21.2928,0 1|1:88:2,7,77:2:74:7,77:278,3034:-266.109,-243.827,-247.773,-17.13,-0.28403,0 dDocent_Contig_2183 9 . G T 226.774 . AB=0.177966;ABP=109.302;AC=2;AF=0.333333;AN=6;AO=21;CIGAR=1X;DP=152;DPB=152;DPRA=1.73529;EPP=48.6112;EPPR=287.473;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=679;QR=4742;RO=131;RPL=0;RPP=48.6112;RPPR=287.473;RPR=21;RUN=1;SAF=21;SAP=48.6112;SAR=0;SRF=131;SRP=287.473;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:104:87,17:87:3165:17:551:-18.5819,0,-253.715 0/1:14:10,4:10:377:4:128:-7.6184,0,-30.0672 0/0:34:34,0:34:1200:0:0:0,-10.235,-108.281 dDocent_Contig_2184 8 . A T 177.573 . AB=0.162162;ABP=113.051;AC=2;AF=0.333333;AN=6;AO=18;CIGAR=1X;DP=130;DPB=130;DPRA=2.92105;EPP=42.0968;EPPR=246.215;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=596;QR=3513;RO=112;RPL=0;RPP=42.0968;RPPR=246.215;RPR=18;RUN=1;SAF=18;SAP=42.0968;SAR=0;SRF=112;SRP=246.215;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:75:61,14:61:1924:14:461:-19.2205,0,-150.813 0/0:19:19,0:19:573:0:0:0,-5.71957,-51.8491 0/1:36:32,4:32:1016:4:135:-1.6452,0,-80.8719 dDocent_Contig_2185 63 . C T 2655.83 . AB=0.549383;ABP=6.44176;AC=3;AF=0.5;AN=6;AO=89;CIGAR=1X;DP=162;DPB=162;DPRA=0;EPP=196.271;EPPR=161.528;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=3545;QR=2905;RO=73;RPL=89;RPP=196.271;RPPR=161.528;RPR=0;RUN=1;SAF=89;SAP=196.271;SAR=0;SRF=73;SRP=161.528;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:104:47,57:47:1869:57:2280:-174.055,0,-137.111 0/1:18:5,13:5:202:13:506:-40.464,0,-13.1435 0/1:40:21,19:21:834:19:759:-56.5875,0,-63.3283 dDocent_Contig_2186 7 . G A 85.1408 . AB=0.285714;ABP=8.59409;AC=1;AF=0.166667;AN=6;AO=4;CIGAR=1X;DP=31;DPB=31;DPRA=1.64706;EPP=11.6962;EPPR=55.1256;GTI=0;LEN=1;MEANALT=2;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=156;QR=791;RO=24;RPL=0;RPP=11.6962;RPPR=55.1256;RPR=4;RUN=1;SAF=4;SAP=11.6962;SAR=0;SRF=24;SRP=55.1256;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:11:9,0:9:259:0:0:0,-2.70927,-23.3889 0/0:6:6,0:6:216:0:0:0,-1.80618,-19.7888 0/1:14:9,4:9:316:4:156:-10.338,0,-24.7304 dDocent_Contig_2187 98 . N G 97.6533 . AB=0;ABP=0;AC=4;AF=1;AN=4;AO=3;CIGAR=1X;DP=3;DPB=3;DPRA=0;EPP=9.52472;EPPR=0;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=0;NS=2;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=98;QR=0;RO=0;RPL=3;RPP=9.52472;RPPR=0;RPR=0;RUN=1;SAF=3;SAP=9.52472;SAR=0;SRF=0;SRP=0;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL ./.:.:.:.:.:.:.:. 1/1:2:0,2:0:0:2:67:-6.36304,-0.60206,0 1/1:1:0,1:0:0:1:31:-3.09945,-0.30103,0 dDocent_Contig_2188 107 . N G 217.479 . AB=0;ABP=0;AC=4;AF=1;AN=4;AO=7;CIGAR=1X1M1D1M;DP=7;DPB=5.25;DPRA=0;EPP=18.2106;EPPR=0;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=0;NS=2;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=231;QR=0;RO=0;RPL=0;RPP=18.2106;RPPR=0;RPR=7;RUN=1;SAF=0;SAP=18.2106;SAR=7;SRF=0;SRP=0;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL .:.:.:.:.:.:.:. 1|1:5:0,5:0:0:5:164:-15.0831,-1.50515,0 1|1:2:0,2:0:0:2:67:-6.36314,-0.60206,0 dDocent_Contig_2190 61 . C T 1653.73 . AB=0.604167;ABP=12.0581;AC=3;AF=0.5;AN=6;AO=58;CIGAR=1M1I8M1X;DP=96;DPB=103.6;DPRA=0;EPP=128.956;EPPR=76.8404;GTI=0;LEN=1;MEANALT=1.66667;MQM=60;MQMR=60;NS=3;NUMALT=2;ODDS=0;PAIRED=1;PAIREDR=0.941176;PAO=0;PQA=0;PQR=0;PRO=0;QA=2200;QR=1332;RO=34;RPL=58;RPP=128.956;RPPR=76.8404;RPR=0;RUN=1;SAF=58;SAP=128.956;SAR=0;SRF=34;SRP=76.8404;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|1:39:18,20,0:18:701:20,0:753,0:-56.5535,0,-51.8853,-61.9721,-57.9059,-119.598 0|1:42:9,30,3:9:355:30,3:1140,80:-90.8693,0,-20.2739,-87.2965,-23.0443,-115.606 0|1:15:7,8,0:7:276:8,0:307,0:-23.4729,0,-20.6936,-25.5801,-23.1018,-48.2929 dDocent_Contig_2191 8 . A C 34.5192 . AB=0.230769;ABP=11.1951;AC=1;AF=0.166667;AN=6;AO=3;CIGAR=1X2M1X;DP=79;DPB=79;DPRA=0.393939;EPP=9.52472;EPPR=165.871;GTI=0;LEN=1;MEANALT=2;MQM=39.3333;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=0;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=102;QR=2554;RO=75;RPL=0;RPP=9.52472;RPPR=165.871;RPR=3;RUN=1;SAF=3;SAP=9.52472;SAR=0;SRF=75;SRP=165.871;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|0:37:37,0:37:1263:0:0:0,-11.1381,-113.948 0|1:13:9,3:9:310:3:102:-5.27568,0,-24.3037 0|0:29:29,0:29:981:0:0:0,-8.72987,-88.5834 dDocent_Contig_2192 50 . G T 34.9702 . AB=0.230769;ABP=11.1951;AC=1;AF=0.166667;AN=6;AO=3;CIGAR=1X;DP=115;DPB=115;DPRA=0.254902;EPP=9.52472;EPPR=246.215;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=99;QR=3812;RO=112;RPL=3;RPP=9.52472;RPPR=246.215;RPR=0;RUN=1;SAF=3;SAP=9.52472;SAR=0;SRF=112;SRP=246.215;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:85:85,0:85:2937:0:0:0,-25.5875,-264.556 0/1:13:10,3:10:334:3:99:-5.32079,0,-26.4708 0/0:17:17,0:17:541:0:0:0,-5.11751,-48.9929 dDocent_Contig_2193 17 . T G 202.702 . AB=0.307692;ABP=11.3621;AC=1;AF=0.166667;AN=6;AO=10;CIGAR=1X;DP=58;DPB=58;DPRA=0;EPP=24.725;EPPR=107.241;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=404;QR=1925;RO=48;RPL=0;RPP=24.725;RPPR=107.241;RPR=10;RUN=1;SAF=10;SAP=24.725;SAR=0;SRF=48;SRP=107.241;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:26:18,8:18:724:8:325:-21.7926,0,-57.6582 0/0:15:14,1:14:560:1:38:0,-0.718181,-46.9438 0/0:17:16,1:16:641:1:41:0,-1.02294,-53.9267 dDocent_Contig_2194 9 . G C 67.1844 . AB=0.146341;ABP=47.552;AC=1;AF=0.166667;AN=6;AO=7;CIGAR=1X;DP=453;DPB=453;DPRA=0.23301;EPP=18.2106;EPPR=971.487;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=267;QR=15814;RO=446;RPL=0;RPP=18.2106;RPPR=971.487;RPR=7;RUN=1;SAF=7;SAP=18.2106;SAR=0;SRF=446;SRP=971.487;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:309:309,0:309:10867:0:0:0,-93.0183,-977.755 0/1:41:35,6:35:1277:6:228:-8.54235,0,-102.875 0/0:103:102,1:102:3670:1:39:0,-27.1095,-326.534 dDocent_Contig_2195 23 . G A 129.824 . AB=0.241379;ABP=19.8579;AC=2;AF=0.333333;AN=6;AO=9;CIGAR=1X;DP=52;DPB=52;DPRA=0;EPP=22.5536;EPPR=96.3836;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=0.222222;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=343;QR=1656;RO=43;RPL=0;RPP=22.5536;RPPR=96.3836;RPR=9;RUN=1;SAF=9;SAP=22.5536;SAR=0;SRF=43;SRP=96.3836;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:23:21,2:21:813:2:71:0,-0.182606,-66.7486 0/1:17:13,4:13:501:4:156:-9.29931,0,-40.3202 0/1:12:9,3:9:342:3:116:-7.20504,0,-27.5236 dDocent_Contig_2196 109 . C T 6816.46 . AB=0.8125;ABP=30.1537;AC=5;AF=0.833333;AN=6;AO=233;CIGAR=1X;DP=253;DPB=253;DPRA=0;EPP=508.963;EPPR=46.4397;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=8182;QR=693;RO=20;RPL=0;RPP=508.963;RPPR=46.4397;RPR=233;RUN=1;SAF=0;SAP=508.963;SAR=233;SRF=0;SRP=46.4397;SRR=20;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 1/1:163:11,152:11:384:152:5324:-444.41,-14.1723,0 0/1:32:6,26:6:208:26:915:-73.0342,0,-9.42668 1/1:58:3,55:3:101:55:1943:-165.724,-8.03614,0 dDocent_Contig_2197 20 . C T 1869.06 . AB=0.41358;ABP=13.5192;AC=3;AF=0.5;AN=6;AO=67;CIGAR=1X;DP=162;DPB=162;DPRA=0;EPP=148.499;EPPR=209.3;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=59.9053;NS=3;NUMALT=1;ODDS=0;PAIRED=0;PAIREDR=0.705263;PAO=0;PQA=0;PQR=0;PRO=0;QA=2670;QR=3765;RO=95;RPL=0;RPP=148.499;RPPR=209.3;RPR=67;RUN=1;SAF=67;SAP=148.499;SAR=0;SRF=95;SRP=209.3;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:75:42,33:42:1651:33:1328:-97.2007,0,-126.245 0/1:29:21,8:21:832:8:307:-19.2548,0,-66.4633 0/1:58:32,26:32:1282:26:1035:-75.973,0,-98.1625 dDocent_Contig_2198 43 . A G 3621.28 . AB=0.772727;ABP=74.0767;AC=4;AF=0.666667;AN=6;AO=113;CIGAR=1X;DP=139;DPB=139;DPRA=0;EPP=248.387;EPPR=59.4686;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=4468;QR=1027;RO=26;RPL=0;RPP=248.387;RPPR=59.4686;RPR=113;RUN=1;SAF=113;SAP=248.387;SAR=0;SRF=26;SRP=59.4686;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:53:6,47:6:235:47:1871:-152.648,0,-5.56178 1/1:29:1,28:1:41:28:1083:-93.6591,-4.6353,0 0/1:57:19,38:19:751:38:1514:-119.344,0,-50.7506 dDocent_Contig_2199 12 . G A 3818.06 . AB=0.705479;ABP=56.5535;AC=4;AF=0.666667;AN=6;AO=121;CIGAR=1X;DP=164;DPB=164;DPRA=0;EPP=265.758;EPPR=96.3836;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=6.93889e-18;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=4762;QR=1700;RO=43;RPL=0;RPP=265.758;RPPR=96.3836;RPR=121;RUN=1;SAF=121;SAP=265.758;SAR=0;SRF=43;SRP=96.3836;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:88:24,64:24:952:64:2526:-200.988,0,-59.4946 1/1:18:0,18:0:0:18:700:-63.3173,-5.41854,0 0/1:58:19,39:19:748:39:1536:-121.024,0,-50.1829 dDocent_Contig_2200 9 . G A 163.079 . AB=0.310345;ABP=12.0706;AC=1;AF=0.166667;AN=6;AO=13;CIGAR=1X;DP=107;DPB=107;DPRA=0;EPP=16.5402;EPPR=207.129;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=0.692308;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=442;QR=3364;RO=94;RPL=0;RPP=31.2394;RPPR=207.129;RPR=13;RUN=1;SAF=11;SAP=16.5402;SAR=2;SRF=94;SRP=207.129;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:30:28,2:28:982:2:76:0,-1.81623,-81.4601 0/1:29:20,9:20:742:9:295:-18.1318,0,-58.3761 0/0:48:46,2:46:1640:2:71:0,-7.70754,-141.105 dDocent_Contig_2202 106 . N G 1157 . AB=0;ABP=0;AC=6;AF=1;AN=6;AO=37;CIGAR=2X;DP=37;DPB=37;DPRA=0;EPP=83.3548;EPPR=0;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=0;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=1268;QR=0;RO=0;RPL=0;RPP=83.3548;RPPR=0;RPR=37;RUN=1;SAF=0;SAP=83.3548;SAR=37;SRF=0;SRP=0;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 1|1:15:0,15:0:0:15:499:-45.2249,-4.51545,0 1|1:3:0,3:0:0:3:102:-9.5168,-0.90309,0 1|1:19:0,19:0:0:19:667:-60.3559,-5.71957,0 dDocent_Contig_2203 21 . T C 800.422 . AB=0.2;ABP=163.265;AC=3;AF=0.5;AN=6;AO=41;CIGAR=1X;DP=205;DPB=205;DPRA=0;EPP=92.0407;EPPR=359.132;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=0.969512;PAO=0;PQA=0;PQR=0;PRO=0;QA=1625;QR=6527;RO=164;RPL=0;RPP=92.0407;RPPR=359.132;RPR=41;RUN=1;SAF=41;SAP=92.0407;SAR=0;SRF=164;SRP=359.132;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:74:64,10:64:2543:10:403:-14.3527,0,-206.723 0/1:56:43,13:43:1719:13:503:-28.7549,0,-138.075 0/1:75:57,18:57:2265:18:719:-42.4575,0,-181.437 dDocent_Contig_2205 14 . A G 2179.03 . AB=0.0377358;ABP=888.356;AC=0;AF=0;AN=6;AO=18;CIGAR=3M1X5M1X2M;DP=477;DPB=379.5;DPRA=0;EPP=42.0968;EPPR=439.476;GTI=0;LEN=1;MEANALT=8.33333;MQM=60;MQMR=57.8358;NS=3;NUMALT=6;ODDS=0;PAIRED=1;PAIREDR=0.00497512;PAO=0;PQA=0;PQR=0;PRO=0;QA=701;QR=7788;RO=201;RPL=0;RPP=42.0968;RPPR=439.476;RPR=18;RUN=1;SAF=18;SAP=42.0968;SAR=0;SRF=201;SRP=439.476;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|0:146:69,3,42,9,8,8,3:69:2688:3,42,9,8,8,3:119,1148,363,312,324,113:-69.8264,-80.7983,-300.731,0,-211.023,-208.176,-74.4097,-285.444,-204.635,-292.531,-64.9443,-275.988,-195.174,-269.594,-283.376,-63.8703,-274.915,-194.101,-268.521,-259.065,-282.303,-81.3355,-292.374,-211.56,-285.981,-276.524,-275.451,-301.268 0|0:206:81,12,43,28,5,4,28:81:3128:12,43,28,5,4,28:460,1186,1122,187,163,1100:-69.3512,-55.9765,-303.221,0,-213.095,-237.903,-37.836,-250.931,-194.953,-280.255,-78.4219,-291.522,-235.537,-273.373,-327.771,-80.2844,-293.385,-237.399,-275.236,-315.827,-329.935,-3.24593,-216.357,-160.374,-198.21,-238.8,-240.663,-245.683 0|0:125:51,3,32,2,6,0,30:51:1972:3,32,2,6,0,30:122,905,82,241,0,1208:-84.2477,-89.5344,-243.889,-27.8631,-173.033,-173.464,-95.6377,-240.828,-179.134,-250.291,-79.7362,-224.93,-163.236,-231.032,-233.189,-99.6002,-244.792,-183.097,-250.893,-234.995,-254.856,0,-145.215,-83.5251,-151.317,-135.417,-155.28,-146.249 dDocent_Contig_2207 7 . G A 1902.82 . AB=0.0621469;ABP=592.498;AC=0;AF=0;AN=6;AO=22;CIGAR=1X2M1X2M3X;DP=787;DPB=787;DPRA=0;EPP=50.7827;EPPR=1156.06;GTI=0;LEN=1;MEANALT=11.5;MQM=60;MQMR=60;NS=3;NUMALT=3;ODDS=1.11022e-16;PAIRED=1;PAIREDR=0.986817;PAO=0;PQA=0;PQR=0;PRO=0;QA=837;QR=19680;RO=531;RPL=0;RPP=50.7827;RPPR=1156.06;RPR=22;RUN=1;SAF=22;SAP=50.7827;SAR=0;SRF=531;SRP=1156.06;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|0:124:76,11,5,12:76:2824:11,5,12:424,153,483:-16.9417,-4.99585,-232.786,-27.5726,-223.846,-257.16,0,-196.287,-218.855,-227.494 0|0:433:320,0,24,62:320:11901:0,24,62:0,814,2454:-105.683,-202.012,-1175.99,-136.017,-1110,-1102.77,0,-974.04,-908.046,-955.377 0|0:230:135,11,18,35:135:4955:11,18,35:413,606,1383:-73.1805,-79.9857,-481.671,-64.738,-435.898,-464.312,0,-371.178,-355.927,-394.475 dDocent_Contig_2208 88 . A C 90.916 . AB=0.205882;ABP=28.557;AC=2;AF=0.333333;AN=6;AO=10;CIGAR=1X;DP=74;DPB=74;DPRA=0;EPP=24.725;EPPR=141.985;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=352;QR=2203;RO=64;RPL=10;RPP=24.725;RPPR=141.985;RPR=0;RUN=1;SAF=10;SAP=24.725;SAR=0;SRF=64;SRP=141.985;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:40:37,3:37:1272:3:106:0,-2.15203,-104.893 0/1:23:20,3:20:690:3:106:-2.96547,0,-55.4983 0/1:11:7,4:7:241:4:140:-9.6336,0,-18.7151 dDocent_Contig_2210 7 . G A 42.8412 . AB=0.2;ABP=18.6449;AC=1;AF=0.166667;AN=6;AO=5;CIGAR=1X;DP=60;DPB=60;DPRA=2;EPP=13.8677;EPPR=115.927;GTI=0;LEN=1;MEANALT=2;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=161;QR=1756;RO=52;RPL=0;RPP=13.8677;RPPR=115.927;RPR=5;RUN=1;SAF=5;SAP=13.8677;SAR=0;SRF=52;SRP=115.927;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:20:15,4:15:485:4:128:-5.80698,0,-37.929 0/0:28:26,1:26:894:1:33:0,-5.08863,-77.5253 0/0:12:11,0:11:377:0:0:0,-3.31133,-34.1246 dDocent_Contig_2211 16 . T A 7882.07 . AB=0.739645;ABP=171.614;AC=3;AF=0.5;AN=6;AO=250;CIGAR=1M1X2M;DP=338;DPB=335;DPRA=0;EPP=545.878;EPPR=165.871;GTI=0;LEN=1;MEANALT=3;MQM=60;MQMR=60;NS=3;NUMALT=2;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=9917;QR=2953;RO=75;RPL=0;RPP=545.878;RPPR=165.871;RPR=250;RUN=1;SAF=250;SAP=545.878;SAR=0;SRF=75;SRP=165.871;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|1:172:49,0,118:49:1915:0,118:0,4692:-371.566,-386.316,-543.743,0,-157.451,-121.93 0|1:62:10,0,51:10:393:0,51:0,1983:-159.932,-162.942,-195.266,0,-32.3438,-16.9913 0|1:104:16,6,81:16:645:6,81:240,3242:-262.232,-247.279,-298.639,0,-33.3987,-28.7848 dDocent_Contig_2212 121 . A G 104.157 . AB=0.153846;ABP=111.25;AC=3;AF=0.5;AN=6;AO=16;CIGAR=1X;DP=104;DPB=104;DPRA=0;EPP=37.7539;EPPR=194.1;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=514;QR=3059;RO=88;RPL=0;RPP=37.7539;RPPR=194.1;RPR=16;RUN=1;SAF=0;SAP=37.7539;SAR=16;SRF=0;SRP=194.1;SRR=88;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:34:30,4:30:1045:4:140:-2.70991,0,-84.1273 0/1:39:32,7:32:1116:7:215:-7.90997,0,-89.01 0/1:31:26,5:26:898:5:159:-5.29125,0,-71.8035 dDocent_Contig_2213 83 . T G 6541.36 . AB=0.731481;ABP=153.807;AC=3;AF=0.5;AN=6;AO=237;CIGAR=1X2M1X1M1X;DP=324;DPB=324;DPRA=0;EPP=517.649;EPPR=185.414;GTI=0;LEN=1;MEANALT=2;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=8408;QR=3063;RO=84;RPL=237;RPP=517.649;RPPR=185.414;RPR=0;RUN=1;SAF=237;SAP=517.649;SAR=0;SRF=84;SRP=185.414;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|1:138:44,93:44:1602:93:3343:-259.456,0,-102.844 0|1:75:21,53:21:792:53:1876:-146.438,0,-48.9406 0|1:111:19,91:19:669:91:3189:-253.764,0,-27.0624 dDocent_Contig_2214 7 . G A 60629.2 . AB=0;ABP=0;AC=0;AF=0;AN=6;AO=89;CIGAR=1X3M1X;DP=2274;DPB=2274;DPRA=0;EPP=196.271;EPPR=348.274;GTI=0;LEN=1;MEANALT=10.6667;MQM=60;MQMR=60;NS=3;NUMALT=2;ODDS=0;PAIRED=1;PAIREDR=0.993711;PAO=0;PQA=0;PQR=0;PRO=0;QA=3325;QR=5459;RO=159;RPL=0;RPP=196.271;RPPR=348.274;RPR=89;RUN=1;SAF=89;SAP=196.271;SAR=0;SRF=159;SRP=348.274;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|0:949:79,51,778:79:2736:51,778:1894,29846:-2437.54,-2306.34,-2513.31,-11.8831,-79.2101,0 0|0:535:32,17,459:32:1045:17,459:636,17623:-1490.64,-1448.19,-1527.44,-53.8032,-86.0816,0 0|0:790:48,21,665:48:1678:21,665:795,25413:-2134.15,-2083.42,-2213.59,-63.698,-135.006,0 dDocent_Contig_2216 36 . G A 9564.82 . AB=0.304435;ABP=167.78;AC=3;AF=0.5;AN=6;AO=151;CIGAR=1X6M1X1M;DP=496;DPB=496.444;DPRA=0;EPP=330.903;EPPR=85.5263;GTI=0;LEN=1;MEANALT=11;MQM=60;MQMR=60;NS=3;NUMALT=5;ODDS=1.11022e-16;PAIRED=0.993377;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=5843;QR=1481;RO=38;RPL=0;RPP=330.903;RPPR=85.5263;RPR=151;RUN=1;SAF=151;SAP=330.903;SAR=0;SRF=38;SRP=85.5263;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 1|0:138:11,8,13,25,13,54:11:432:8,13,25,13,54:313,506,977,485,2160:-219.399,-196.975,-230.097,-181.128,-190.923,-212.745,-142.391,-152.186,-136.34,-170.396,-183.019,-192.814,-176.967,-138.23,-214.635,-44.7894,-54.5846,-38.7378,0,-40.6293,-64.0644 1|0:215:7,3,6,83,7,85:7:268:3,6,83,7,85:119,219,3178,281,3327:-510.175,-502.486,-523.575,-494.395,-506.592,-514.581,-251.526,-263.721,-255.632,-248.532,-489.127,-501.323,-493.233,-250.363,-509.012,-238.764,-250.961,-242.871,0,-237.602,-235.169 1|0:143:20,4,1,43,17,51:20:781:4,1,43,17,51:160,40,1688,656,1993:-232.431,-225.271,-288.268,-235.157,-286.176,-299.056,-99.6253,-150.645,-160.531,-150.882,-184.593,-235.613,-245.498,-109.967,-243.676,-74.628,-125.648,-135.534,0,-84.9699,-123.476 dDocent_Contig_2218 175 . T G 87.9704 . AB=0.333333;ABP=5.9056;AC=1;AF=0.166667;AN=6;AO=4;CIGAR=1X;DP=56;DPB=56;DPRA=0.545455;EPP=11.6962;EPPR=115.927;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=154;QR=2007;RO=52;RPL=4;RPP=11.6962;RPPR=115.927;RPR=0;RUN=1;SAF=0;SAP=11.6962;SAR=4;SRF=0;SRP=115.927;SRR=52;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:38:38,0:38:1457:0:0:0,-11.4391,-131.396 0/0:6:6,0:6:235:0:0:0,-1.80618,-21.5207 0/1:12:8,4:8:315:4:154:-10.6209,0,-25.1036 dDocent_Contig_2219 9 . G A 294.593 . AB=0.142222;ABP=253.174;AC=2;AF=0.333333;AN=6;AO=40;CIGAR=1X;DP=331;DPB=331;DPRA=0;EPP=89.8692;EPPR=628.394;GTI=0;LEN=1;MEANALT=1.33333;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=1357;QR=10242;RO=288;RPL=0;RPP=89.8692;RPPR=628.394;RPR=40;RUN=1;SAF=40;SAP=89.8692;SAR=0;SRF=288;SRP=628.394;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:122:108,14:108:3796:14:488:-7.51477,0,-305.037 0/1:103:85,18:85:3070:18:624:-25.4674,0,-245.476 0/0:106:95,8:95:3376:8:245:0,-9.01817,-281.633 dDocent_Contig_2220 42 . G T 3130.55 . AB=0.108333;ABP=162.903;AC=0;AF=0;AN=6;AO=13;CIGAR=1X2M1X;DP=153;DPB=153;DPRA=0;EPP=31.2394;EPPR=87.6977;GTI=0;LEN=1;MEANALT=2;MQM=60;MQMR=60;NS=3;NUMALT=2;ODDS=1.38778e-17;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=514;QR=1491;RO=39;RPL=0;RPP=31.2394;RPPR=87.6977;RPR=13;RUN=1;SAF=13;SAP=31.2394;SAR=0;SRF=39;SRP=87.6977;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|0:91:25,8,58:25:961:8,58:315,2291:-180.979,-162.591,-239.074,0,-52.9712,-61.4275 0|0:33:8,0,25:8:302:0,25:0,998:-80.1847,-82.593,-107.34,0,-25.1294,-17.6036 0|0:29:6,5,18:6:228:5,18:199,719:-57.413,-42.8332,-60.0212,0,-2.29386,-13.2696 dDocent_Contig_2221 55 . G A 846.787 . AB=0.555556;ABP=4.45795;AC=3;AF=0.5;AN=6;AO=30;CIGAR=1X;DP=54;DPB=54;DPRA=0;EPP=68.1545;EPPR=55.1256;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=1171;QR=940;RO=24;RPL=30;RPP=68.1545;RPPR=55.1256;RPR=0;RUN=1;SAF=30;SAP=68.1545;SAR=0;SRF=24;SRP=55.1256;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:15:5,10:5:201:10:382:-30.2155,0,-13.9557 0/1:17:12,5:12:475:5:199:-13.1699,0,-37.9786 0/1:22:7,15:7:264:15:590:-46.8161,0,-17.4899 dDocent_Contig_2222 45 . C A 578.037 . AB=0.308642;ABP=28.7731;AC=3;AF=0.5;AN=6;AO=25;CIGAR=1X;DP=81;DPB=81;DPRA=0;EPP=57.2971;EPPR=124.613;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=963;QR=2239;RO=56;RPL=0;RPP=57.2971;RPPR=124.613;RPR=25;RUN=1;SAF=25;SAP=57.2971;SAR=0;SRF=56;SRP=124.613;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:39:32,7:32:1275:7:279:-13.7406,0,-103.266 0/1:11:7,4:7:284:4:135:-9.168,0,-22.6227 0/1:31:17,14:17:680:14:549:-40.418,0,-52.1991 dDocent_Contig_2223 31 . A G 428.963 . AB=0.363636;ABP=10.1169;AC=1;AF=0.166667;AN=6;AO=20;CIGAR=1X;DP=141;DPB=141;DPRA=1.85;EPP=46.4397;EPPR=259.244;GTI=0;LEN=1;MEANALT=1.5;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=792;QR=4670;RO=118;RPL=0;RPP=46.4397;RPPR=259.244;RPR=20;RUN=1;SAF=20;SAP=46.4397;SAR=0;SRF=118;SRP=259.244;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:44:28,16:28:1135:16:637:-44.4192,0,-89.1833 0/0:67:60,4:60:2356:4:155:0,-5.33856,-197.885 0/0:30:30,0:30:1179:0:0:0,-9.0309,-106.395 dDocent_Contig_2224 25 . T G 178.893 . AB=0.120482;ABP=210.687;AC=3;AF=0.5;AN=6;AO=20;CIGAR=1X;DP=166;DPB=166;DPRA=0;EPP=46.4397;EPPR=320.045;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=802;QR=5842;RO=146;RPL=0;RPP=46.4397;RPPR=320.045;RPR=20;RUN=1;SAF=20;SAP=46.4397;SAR=0;SRF=146;SRP=320.045;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:54:49,5:49:1962:5:201:-2.21527,0,-160.517 0/1:75:65,10:65:2593:10:398:-13.6017,0,-210.933 0/1:37:32,5:32:1287:5:203:-7.51495,0,-104.958 dDocent_Contig_2225 21 . C A 4251.49 . AB=0.708333;ABP=75.3927;AC=3;AF=0.5;AN=6;AO=136;CIGAR=3M2D1X1M1X1M1X6M;DP=192;DPB=177.875;DPRA=0;EPP=298.331;EPPR=65.983;GTI=0;LEN=1;MEANALT=4;MQM=60;MQMR=60;NS=3;NUMALT=3;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=5331;QR=1116;RO=29;RPL=0;RPP=298.331;RPPR=65.983;RPR=136;RUN=1;SAF=136;SAP=298.331;SAR=0;SRF=29;SRP=65.983;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|1:87:11,2,62,10:11:418:2,62,10:80,2442,399:-197.576,-194.297,-227.971,0,-27.6788,-15.606,-168.026,-195.711,-1.40267,-199.291 0|1:36:11,2,20,2:11:434:2,20,2:72,782,74:-60.9971,-58.4359,-93.5463,0,-29.86,-29.7106,-58.2561,-88.096,-29.6797,-93.3669 1|0:69:7,0,54,7:7:264:0,54,7:0,2107,275:-172.079,-174.186,-195.818,-0.997762,-22.6258,-6.37014,-151.568,-173.2,0,-171.093 dDocent_Contig_2226 75 . A T 164.317 . AB=0.211538;ABP=40.5935;AC=2;AF=0.333333;AN=6;AO=11;CIGAR=1X;DP=58;DPB=58;DPRA=4.33333;EPP=26.8965;EPPR=105.07;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=388;QR=1668;RO=47;RPL=11;RPP=26.8965;RPPR=105.07;RPR=0;RUN=1;SAF=11;SAP=26.8965;SAR=0;SRF=47;SRP=105.07;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:12:9,3:9:315:3:105:-6.18336,0,-25.074 0/1:40:32,8:32:1140:8:283:-13.7712,0,-90.8647 0/0:6:6,0:6:213:0:0:0,-1.80618,-19.5153 dDocent_Contig_2227 131 . A T 1086.02 . AB=0.47191;ABP=3.62026;AC=3;AF=0.5;AN=6;AO=42;CIGAR=1X3M;DP=89;DPB=89;DPRA=0;EPP=94.2121;EPPR=87.6977;GTI=0;LEN=1;MEANALT=2;MQM=60;MQMR=60;NS=3;NUMALT=3;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=1537;QR=1428;RO=39;RPL=0;RPP=94.2121;RPPR=87.6977;RPR=42;RUN=1;SAF=0;SAP=94.2121;SAR=42;SRF=0;SRP=87.6977;SRR=39;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|1:30:12,3,0,15:12:439:3,0,15:111,0,549:-41.2517,-35.7823,-70.7552,-44.864,-71.6583,-80.7397,0,-26.7908,-35.8727,-31.3573 0|1:34:13,0,4,17:13:478:0,4,17:0,148,617:-46.4634,-50.3767,-89.4604,-38.2673,-77.3517,-76.1476,0,-39.0806,-26.972,-33.9631 0|1:25:14,0,0,10:14:511:0,0,10:0,0,371:-26.4096,-30.624,-72.3862,-30.624,-72.3862,-72.3862,0,-42.0165,-42.0165,-39.0062 dDocent_Contig_2228 151 . A G 38.7124 . AB=0.103448;ABP=121.842;AC=1;AF=0.166667;AN=6;AO=9;CIGAR=2X;DP=138;DPB=138;DPRA=3.41176;EPP=22.5536;EPPR=283.13;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=347;QR=4914;RO=129;RPL=0;RPP=22.5536;RPPR=283.13;RPR=9;RUN=1;SAF=0;SAP=22.5536;SAR=9;SRF=0;SRP=283.13;SRR=129;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|1:87:78,9:78:2982:9:347:-5.39406,0,-242.339 0|0:12:12,0:12:433:0:0:0,-3.61236,-39.3033 0|0:39:39,0:39:1499:0:0:0,-11.7402,-135.175 dDocent_Contig_2230 23 . G A 408.517 . AB=0.0483871;ABP=112.845;AC=0;AF=0;AN=6;AO=4;CIGAR=1M1D8M1X;DP=116;DPB=113.273;DPRA=0;EPP=11.6962;EPPR=198.443;GTI=0;LEN=1;MEANALT=2.33333;MQM=42;MQMR=60;NS=3;NUMALT=3;ODDS=0;PAIRED=0;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=157;QR=3512;RO=90;RPL=0;RPP=11.6962;RPPR=198.443;RPR=4;RUN=1;SAF=4;SAP=11.6962;SAR=0;SRF=90;SRP=198.443;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|0:54:50,1,0,3:50:1956:1,0,3:39,0,104:0,-11.9947,-172.549,-15.0515,-172.85,-175.9,-6.63604,-164.418,-167.467,-166.564 0|0:28:13,2,12,1:13:509:2,12,1:78,467,40:-34.4614,-32.2813,-73.533,0,-35.7677,-38.2487,-35.0788,-70.8396,-38.5652,-76.6331 0|0:34:27,1,6,0:27:1047:1,6,0:40,221,0:-9.91316,-14.9316,-100.66,0,-82.9138,-84.2151,-18.041,-100.961,-86.0213,-104.068 dDocent_Contig_2231 125 . G C 215.967 . AB=0.225806;ABP=43.4978;AC=2;AF=0.333333;AN=6;AO=18;CIGAR=1X;DP=156;DPB=156;DPRA=0;EPP=42.0968;EPPR=302.673;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=6.93889e-18;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=623;QR=4905;RO=138;RPL=0;RPP=42.0968;RPPR=302.673;RPR=18;RUN=1;SAF=0;SAP=42.0968;SAR=18;SRF=0;SRP=302.673;SRR=138;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:94:90,4:90:3211:4:144:0,-14.9832,-275.9 0/1:41:31,10:31:1104:10:338:-18.4042,0,-87.3279 0/1:21:17,4:17:590:4:141:-6.7154,0,-47.1006 dDocent_Contig_2232 7 . A G 2242.74 . AB=0.170868;ABP=338.919;AC=3;AF=0.500001;AN=6;AO=61;CIGAR=1X6M;DP=357;DPB=357;DPRA=0;EPP=135.47;EPPR=356.96;GTI=0;LEN=1;MEANALT=6;MQM=60;MQMR=60;NS=3;NUMALT=4;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=1989;QR=6362;RO=163;RPL=0;RPP=135.47;RPPR=356.96;RPR=61;RUN=1;SAF=61;SAP=135.47;SAR=0;SRF=163;SRP=356.96;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|1:158:94,14,6,25,16:94:3683:14,6,25,16:493,211,864,527:-41.8975,-30.0652,-328.751,-53.0192,-315.792,-354.11,0,-262.781,-285.731,-295.378,-27.6081,-290.381,-313.331,-260.321,-325.688 0|1:77:21,11,7,4,31:21:817:11,7,4,31:392,251,142,1014:-75.5376,-49.9115,-113.757,-61.3877,-96.5986,-126.436,-70.29,-105.5,-116.975,-136.24,0,-35.2149,-46.6873,-55.5873,-57.8218 0|1:122:48,44,8,7,14:48:1862:44,8,7,14:1557,243,257,448:-112.362,0,-139.772,-107.364,-133.572,-257.953,-105.801,-132.009,-239.353,-256.694,-90.7338,-116.944,-224.285,-222.724,-239.518 dDocent_Contig_2233 84 . G C 1790.09 . AB=0.681818;ABP=28.2783;AC=4;AF=0.666667;AN=6;AO=68;CIGAR=1X;DP=96;DPB=96;DPRA=0;EPP=150.67;EPPR=63.8115;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=0.892857;PAO=0;PQA=0;PQR=0;PRO=0;QA=2312;QR=946;RO=28;RPL=68;RPP=150.67;RPPR=63.8115;RPR=0;RUN=1;SAF=68;SAP=150.67;SAR=0;SRF=28;SRP=63.8115;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:63:19,44:19:643:44:1497:-116.056,0,-39.2225 0/1:25:9,16:9:303:16:545:-41.8481,0,-20.072 1/1:8:0,8:0:0:8:270:-24.6286,-2.40824,0 dDocent_Contig_2234 126 . G A 3428.51 . AB=0.653846;ABP=45.7716;AC=3;AF=0.5;AN=6;AO=136;CIGAR=1X;DP=208;DPB=208;DPRA=0;EPP=298.331;EPPR=159.356;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=1.38778e-17;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=4557;QR=2612;RO=72;RPL=0;RPP=298.331;RPPR=159.356;RPR=136;RUN=1;SAF=0;SAP=298.331;SAR=136;SRF=0;SRP=159.356;SRR=72;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:91:35,56:35:1292:56:1879:-141.991,0,-89.1776 0/1:62:18,44:18:638:44:1483:-115.095,0,-39.0767 0/1:55:19,36:19:682:36:1195:-91.2877,0,-45.1491 dDocent_Contig_2235 21 . G A 1909.21 . AB=0.518797;ABP=3.41847;AC=3;AF=0.5;AN=6;AO=69;CIGAR=1X;DP=133;DPB=133;DPRA=0;EPP=152.842;EPPR=141.985;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=2617;QR=2429;RO=64;RPL=0;RPP=152.842;RPPR=141.985;RPR=69;RUN=1;SAF=69;SAP=152.842;SAR=0;SRF=64;SRP=141.985;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:64:36,28:36:1380:28:1040:-74.6352,0,-105.217 0/1:25:7,18:7:268:18:692:-55.0848,0,-16.9582 0/1:44:21,23:21:781:23:885:-66.7235,0,-57.3652 dDocent_Contig_2236 40 . G A 599.921 . AB=0.187135;ABP=148.397;AC=2;AF=0.333333;AN=6;AO=32;CIGAR=1X;DP=249;DPB=249;DPRA=1.09615;EPP=72.4974;EPPR=474.22;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=1249;QR=8586;RO=217;RPL=0;RPP=72.4974;RPPR=474.22;RPR=32;RUN=1;SAF=32;SAP=72.4974;SAR=0;SRF=217;SRP=474.22;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:135:106,29:106:4205:29:1132:-61.5133,0,-337.78 0/1:36:33,3:33:1263:3:117:-0.0728288,0,-103.097 0/0:78:78,0:78:3118:0:0:0,-23.4803,-280.695 dDocent_Contig_2237 16 . G A 55.0338 . AB=0.0983607;ABP=173.951;AC=2;AF=0.333333;AN=6;AO=15;CIGAR=1X;DP=165;DPB=165;DPRA=0;EPP=35.5824;EPPR=326.56;GTI=0;LEN=1;MEANALT=1.33333;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=602;QR=5734;RO=149;RPL=0;RPP=35.5824;RPPR=326.56;RPR=15;RUN=1;SAF=15;SAP=35.5824;SAR=0;SRF=149;SRP=326.56;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:75:66,8:66:2512:8:326:-7.02447,0,-203.552 0/0:43:40,3:40:1536:3:122:0,-1.5718,-127.122 0/1:47:43,4:43:1686:4:154:-0.083264,0,-137.835 dDocent_Contig_2238 32 . C A 214.352 . AB=0.263158;ABP=21.525;AC=2;AF=0.333333;AN=6;AO=10;CIGAR=1X;DP=52;DPB=52;DPRA=1.35714;EPP=24.725;EPPR=94.2121;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=396;QR=1690;RO=42;RPL=0;RPP=24.725;RPPR=94.2121;RPR=10;RUN=1;SAF=10;SAP=24.725;SAR=0;SRF=42;SRP=94.2121;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:14:14,0:14:559:0:0:0,-4.21442,-50.6512 0/1:17:13,4:13:519:4:164:-10.0324,0,-41.9375 0/1:21:15,6:15:612:6:232:-14.9257,0,-49.0955 dDocent_Contig_2239 45 . A G 402.533 . AB=0.212766;ABP=70.3721;AC=3;AF=0.5;AN=6;AO=20;CIGAR=1X;DP=94;DPB=94;DPRA=0;EPP=46.4397;EPPR=163.699;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=804;QR=2971;RO=74;RPL=0;RPP=46.4397;RPPR=163.699;RPR=20;RUN=1;SAF=20;SAP=46.4397;SAR=0;SRF=74;SRP=163.699;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:28:23,5:23:913:5:195:-9.49067,0,-74.0455 0/1:33:30,3:30:1216:3:122:-1.4385,0,-99.7741 0/1:33:21,12:21:842:12:487:-34.2475,0,-66.1615 dDocent_Contig_2240 12 . T A 5773.27 . AB=0.763052;ABP=152.667;AC=3;AF=0.5;AN=6;AO=190;CIGAR=1X;DP=249;DPB=249;DPRA=0;EPP=415.59;EPPR=131.127;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=7303;QR=2277;RO=59;RPL=0;RPP=415.59;RPPR=131.127;RPR=190;RUN=1;SAF=190;SAP=415.59;SAR=0;SRF=59;SRP=131.127;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:138:44,94:44:1686:94:3622:-284.513,0,-110.44 0/1:43:8,35:8:312:35:1354:-109.18,0,-15.4996 0/1:68:7,61:7:279:61:2327:-189.156,0,-5.01111 dDocent_Contig_2241 8 . A G 81.9807 . AB=0.152542;ABP=64.8789;AC=2;AF=0.333333;AN=6;AO=10;CIGAR=1X;DP=73;DPB=73;DPRA=0;EPP=24.725;EPPR=139.813;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=3.46945e-18;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=359;QR=2209;RO=63;RPL=0;RPP=24.725;RPPR=139.813;RPR=10;RUN=1;SAF=10;SAP=24.725;SAR=0;SRF=63;SRP=139.813;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:37:32,5:32:1097:5:195:-6.78609,0,-87.8797 0/0:14:13,1:13:479:1:39:0,-0.317855,-39.5523 0/1:22:18,4:18:633:4:125:-4.934,0,-50.6625 dDocent_Contig_2242 28 . A C 93.7305 . AB=0.363636;ABP=4.78696;AC=1;AF=0.166667;AN=6;AO=4;CIGAR=1X;DP=35;DPB=35;DPRA=0.916667;EPP=11.6962;EPPR=70.3259;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=157;QR=1238;RO=31;RPL=0;RPP=11.6962;RPPR=70.3259;RPR=4;RUN=1;SAF=4;SAP=11.6962;SAR=0;SRF=31;SRP=70.3259;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:10:10,0:10:398:0:0:0,-3.0103,-36.1772 0/1:11:7,4:7:282:4:157:-11.197,0,-22.4413 0/0:14:14,0:14:558:0:0:0,-4.21442,-50.561 dDocent_Contig_2243 7 . A G 1017.46 . AB=0.581081;ABP=7.23587;AC=3;AF=0.5;AN=6;AO=43;CIGAR=1X;DP=74;DPB=74;DPRA=0;EPP=96.3836;EPPR=70.3259;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=6.93889e-18;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=1429;QR=1150;RO=31;RPL=0;RPP=96.3836;RPPR=70.3259;RPR=43;RUN=1;SAF=43;SAP=96.3836;SAR=0;SRF=31;SRP=70.3259;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:20:10,10:10:379:10:369:-27.5362,0,-28.4429 0/1:15:4,11:4:154:11:335:-25.9255,0,-9.71801 0/1:39:17,22:17:617:22:725:-53.8072,0,-44.113 dDocent_Contig_2245 7 . G T 2283.84 . AB=0.783505;ABP=70.7289;AC=3;AF=0.5;AN=6;AO=76;CIGAR=1X;DP=97;DPB=97;DPRA=0;EPP=168.042;EPPR=48.6112;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=2913;QR=709;RO=21;RPL=0;RPP=168.042;RPPR=48.6112;RPR=76;RUN=1;SAF=76;SAP=168.042;SAR=0;SRF=21;SRP=48.6112;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:45:7,38:7:247:38:1452:-117.412,0,-9.02267 0/1:16:7,9:7:262:9:343:-26.4106,0,-19.1197 0/1:36:7,29:7:200:29:1118:-90.0844,0,-7.442 dDocent_Contig_2246 13 . T C 1223.97 . AB=0.353383;ABP=27.8435;AC=3;AF=0.5;AN=6;AO=47;CIGAR=1X;DP=133;DPB=133;DPRA=0;EPP=105.07;EPPR=189.757;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=6.93889e-18;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=1855;QR=3417;RO=86;RPL=0;RPP=105.07;RPPR=189.757;RPR=47;RUN=1;SAF=47;SAP=105.07;SAR=0;SRF=86;SRP=189.757;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:42:33,9:33:1307:9:367:-20.752,0,-105.252 0/1:37:19,18:19:753:18:694:-51.6463,0,-56.9553 0/1:54:34,20:34:1357:20:794:-55.522,0,-106.131 dDocent_Contig_2247 85 . G A 773.584 . AB=0.62;ABP=9.26414;AC=3;AF=0.5;AN=6;AO=31;CIGAR=1X;DP=50;DPB=50;DPRA=0;EPP=70.3259;EPPR=44.2683;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=1077;QR=659;RO=19;RPL=31;RPP=70.3259;RPPR=44.2683;RPR=0;RUN=1;SAF=31;SAP=70.3259;SAR=0;SRF=19;SRP=44.2683;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:19:9,10:9:298:10:354:-26.4803,0,-21.4195 0/1:21:7,14:7:253:14:481:-37.2941,0,-16.7981 0/1:10:3,7:3:108:7:242:-19.1069,0,-7.06487 dDocent_Contig_2248 25 . G A 175.845 . AB=0.275862;ABP=15.6647;AC=2;AF=0.333333;AN=6;AO=8;CIGAR=1X;DP=61;DPB=61;DPRA=0.453125;EPP=20.3821;EPPR=118.098;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=1.73472e-18;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=323;QR=2049;RO=53;RPL=0;RPP=20.3821;RPPR=118.098;RPR=8;RUN=1;SAF=8;SAP=20.3821;SAR=0;SRF=53;SRP=118.098;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:13:8,5:8:309:5:205:-14.9216,0,-24.2525 0/0:32:32,0:32:1232:0:0:0,-9.63296,-111.146 0/1:16:13,3:13:508:3:118:-6.18572,0,-41.2371 dDocent_Contig_2249 159 . C T 321.34 . AB=0.193182;ABP=74.965;AC=1;AF=0.166667;AN=6;AO=25;CIGAR=1X;DP=259;DPB=259;DPRA=0;EPP=57.2971;EPPR=511.135;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=954;QR=9056;RO=234;RPL=25;RPP=57.2971;RPPR=511.135;RPR=0;RUN=1;SAF=0;SAP=57.2971;SAR=25;SRF=0;SRP=511.135;SRR=234;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:85:81,4:81:3107:4:133:0,-13.2958,-267.427 0/0:86:82,4:82:3163:4:153:0,-11.7474,-270.609 0/1:88:71,17:71:2786:17:668:-33.9579,0,-224.369 dDocent_Contig_2250 14 . C T 157.942 . AB=0.135922;ABP=121.598;AC=2;AF=0.333333;AN=6;AO=14;CIGAR=1X;DP=158;DPB=158;DPRA=0.936364;EPP=33.4109;EPPR=315.702;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=551;QR=5790;RO=144;RPL=0;RPP=33.4109;RPPR=315.702;RPR=14;RUN=1;SAF=14;SAP=33.4109;SAR=0;SRF=144;SRP=315.702;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:55:55,0:55:2210:0:0:0,-16.5566,-199.068 0/1:56:50,6:50:2003:6:231:-4.29712,0,-163.609 0/1:47:39,8:39:1577:8:320:-15.0193,0,-128.014 dDocent_Contig_2251 26 . A T 36.4579 . AB=0.0980392;ABP=74.5837;AC=1;AF=0.166667;AN=6;AO=11;CIGAR=1X1M10D3M7D3M1X;DP=281;DPB=273.654;DPRA=1.30128;EPP=26.8965;EPPR=545.878;GTI=0;LEN=1;MEANALT=5.5;MQM=60;MQMR=60;NS=3;NUMALT=3;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=428;QR=9733;RO=250;RPL=0;RPP=26.8965;RPPR=545.878;RPR=11;RUN=1;SAF=11;SAP=26.8965;SAR=0;SRF=250;SRP=545.878;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|0:152:136,6,0,0:136:5334:6,0,0:230,0,0:0,-22.0402,-458.963,-40.9401,-460.769,-479.644,-40.9401,-460.769,-479.644,-479.644 0|1:51:36,5,5,4:36:1375:5,5,4:198,168,159:-5.46924,0,-111.313,-2.72356,-99.2199,-114.013,-3.20825,-99.7256,-102.426,-114.82 0|0:78:78,0,0,0:78:3024:0,0,0:0,0,0:0,-23.4803,-272.301,-23.4803,-272.301,-272.301,-23.4803,-272.301,-272.301,-272.301 dDocent_Contig_2252 34 . C G 161.905 . AB=0.0769231;ABP=63.6445;AC=0;AF=0;AN=6;AO=3;CIGAR=2M1X1M;DP=64;DPB=57.5;DPRA=0;EPP=9.52472;EPPR=107.241;GTI=0;LEN=1;MEANALT=2;MQM=60;MQMR=60;NS=3;NUMALT=2;ODDS=6.93889e-18;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=96;QR=1796;RO=48;RPL=0;RPP=9.52472;RPPR=107.241;RPR=3;RUN=1;SAF=3;SAP=9.52472;SAR=0;SRF=48;SRP=107.241;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|0:39:26,10,3:26:956:10,3:307,96:-16.7711,0,-75.1885,-16.8625,-70.4713,-94.1593 0|0:13:11,2,0:11:413:2,0:72,0:-2.92325,0,-33.6065,-6.23458,-34.2085,-40.0809 0|0:12:11,1,0:11:427:1,0:38,0:-0.184909,0,-35.1724,-3.49624,-35.4734,-38.5893 dDocent_Contig_2253 12 . T C 124.448 . AB=0.214286;ABP=12.937;AC=0;AF=0;AN=6;AO=3;CIGAR=1X2M1X;DP=75;DPB=75;DPRA=0.466667;EPP=9.52472;EPPR=141.985;GTI=0;LEN=1;MEANALT=2;MQM=60;MQMR=60;NS=3;NUMALT=2;ODDS=6.93889e-18;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=120;QR=2513;RO=64;RPL=0;RPP=9.52472;RPPR=141.985;RPR=3;RUN=1;SAF=3;SAP=9.52472;SAR=0;SRF=64;SRP=141.985;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|0:30:30,0,0:30:1178:0,0:0,0:0,-9.0309,-106.307,-9.0309,-106.307,-106.307 0|0:14:8,3,3:8:318:3,3:120,122:-7.6583,-0.184591,-25.4568,0,-16.2941,-25.277 0|0:31:26,0,5:26:1017:0,5:0,191:-8.22372,-16.0505,-99.6707,0,-84.0033,-82.4982 dDocent_Contig_2254 26 . T G 76.5214 . AB=0.125;ABP=81.1833;AC=1;AF=0.166667;AN=6;AO=9;CIGAR=1X;DP=110;DPB=110;DPRA=2;EPP=22.5536;EPPR=222.329;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=353;QR=4053;RO=101;RPL=0;RPP=22.5536;RPPR=222.329;RPR=9;RUN=1;SAF=9;SAP=22.5536;SAR=0;SRF=101;SRP=222.329;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:64:56,8:56:2247:8:312:-9.17502,0,-183.122 0/0:22:22,0:22:876:0:0:0,-6.62266,-79.1497 0/0:24:23,1:23:930:1:41:0,-3.13015,-79.9062 dDocent_Contig_2256 7 . T G 23989.4 . AB=0;ABP=0;AC=6;AF=1;AN=6;AO=840;CIGAR=1X;DP=875;DPB=875;DPRA=0;EPP=1827.05;EPPR=63.8115;GTI=0;LEN=1;MEANALT=2.33333;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=27075;QR=419;RO=28;RPL=0;RPP=1827.05;RPPR=63.8115;RPR=840;RUN=1;SAF=840;SAP=1827.05;SAR=0;SRF=28;SRP=63.8115;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 1/1:488:18,467:18:268:467:14812:-1308.44,-121.942,0 1/1:137:0,137:0:0:137:4668:-420.217,-41.2411,0 1/1:250:10,236:10:151:236:7595:-669.798,-60.4346,0 dDocent_Contig_2257 24 . T C 780.383 . AB=0.09375;ABP=48.8827;AC=0;AF=0;AN=6;AO=3;CIGAR=12M1X7M;DP=140;DPB=141.8;DPRA=0;EPP=9.52472;EPPR=213.643;GTI=0;LEN=1;MEANALT=3;MQM=60;MQMR=60;NS=3;NUMALT=2;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=112;QR=3792;RO=97;RPL=0;RPP=9.52472;RPPR=213.643;RPR=3;RUN=1;SAF=3;SAP=9.52472;SAR=0;SRF=97;SRP=213.643;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|0:92:61,28,0:61:2375:28,0:1063,0:-68.8649,0,-186.842,-87.2277,-195.271,-282.428 0|0:16:13,3,0:13:508:3,0:114,0:-5.81533,0,-41.2514,-9.72872,-42.1545,-51.5015 0|0:32:23,5,3:23:909:5,3:192,112:-8.88095,0,-73.3762,-6.62571,-65.7156,-80.5735 dDocent_Contig_2258 31 . G A 604.997 . AB=0.489362;ABP=3.0565;AC=3;AF=0.5;AN=6;AO=23;CIGAR=2X;DP=47;DPB=47;DPRA=0;EPP=52.9542;EPPR=55.1256;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=0.347826;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=879;QR=939;RO=24;RPL=0;RPP=52.9542;RPPR=55.1256;RPR=23;RUN=1;SAF=23;SAP=52.9542;SAR=0;SRF=24;SRP=55.1256;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|1:15:6,9:6:241:9:354:-27.7052,0,-17.5512 0|1:13:7,6:7:271:6:210:-15.3222,0,-20.8417 0|1:19:11,8:11:427:8:315:-22.9952,0,-33.0625 dDocent_Contig_2259 62 . G A 181.337 . AB=0.136752;ABP=137.103;AC=2;AF=0.333333;AN=6;AO=17;CIGAR=1X;DP=156;DPB=156;DPRA=0;EPP=39.9253;EPPR=304.845;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=665;QR=5383;RO=139;RPL=17;RPP=39.9253;RPPR=304.845;RPR=0;RUN=1;SAF=17;SAP=39.9253;SAR=0;SRF=139;SRP=304.845;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:71:62,9:62:2397:9:366:-11.932,0,-194.51 0/0:39:38,1:38:1489:1:41:0,-7.6456,-130.16 0/1:46:39,7:39:1497:7:258:-9.72454,0,-121.158 dDocent_Contig_2260 115 . T C 97.1015 . AB=0.225806;ABP=23.254;AC=1;AF=0.166667;AN=6;AO=7;CIGAR=1X;DP=55;DPB=55;DPRA=2.58333;EPP=18.2106;EPPR=107.241;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=225;QR=1509;RO=48;RPL=0;RPP=18.2106;RPPR=107.241;RPR=7;RUN=1;SAF=0;SAP=18.2106;SAR=7;SRF=0;SRP=107.241;SRR=48;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:31:24,7:24:746:7:225:-11.233,0,-58.0989 0/0:8:8,0:8:250:0:0:0,-2.40824,-22.8073 0/0:16:16,0:16:513:0:0:0,-4.81648,-46.4764 dDocent_Contig_2262 19 . G T 2369.93 . AB=0.522876;ABP=3.70574;AC=3;AF=0.5;AN=6;AO=80;CIGAR=1X;DP=153;DPB=153;DPRA=0;EPP=176.728;EPPR=161.528;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=3197;QR=2867;RO=73;RPL=0;RPP=176.728;RPPR=161.528;RPR=80;RUN=1;SAF=80;SAP=176.728;SAR=0;SRF=73;SRP=161.528;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:84:40,44:40:1580:44:1778:-134.938,0,-117.138 0/1:23:8,15:8:320:15:600:-47.4153,0,-22.244 0/1:46:25,21:25:967:21:819:-60.1625,0,-73.4709 dDocent_Contig_2263 21 . T A 52.4646 . AB=0.127273;ABP=69.3784;AC=2;AF=0.333333;AN=6;AO=7;CIGAR=1X;DP=78;DPB=78;DPRA=1.19565;EPP=18.2106;EPPR=157.185;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=273;QR=2571;RO=71;RPL=0;RPP=18.2106;RPPR=157.185;RPR=7;RUN=1;SAF=7;SAP=18.2106;SAR=0;SRF=71;SRP=157.185;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:23:23,0:23:858:0:0:0,-6.92369,-77.5419 0/1:35:31,4:31:1120:4:158:-4.06392,0,-90.5575 0/1:20:17,3:17:593:3:115:-4.70388,0,-47.6721 dDocent_Contig_2266 16 . G A 455.598 . AB=0.201754;ABP=91.0883;AC=3;AF=0.5;AN=6;AO=23;CIGAR=1X1M;DP=114;DPB=114;DPRA=0;EPP=52.9542;EPPR=196.271;GTI=0;LEN=1;MEANALT=1.33333;MQM=60;MQMR=60;NS=3;NUMALT=2;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=917;QR=3451;RO=89;RPL=0;RPP=52.9542;RPPR=196.271;RPR=23;RUN=1;SAF=23;SAP=52.9542;SAR=0;SRF=89;SRP=196.271;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|1:34:24,0,10:24:940:0,10:0,397:-25.85,-33.0747,-110.361,0,-77.6808,-74.6705 0|1:21:11,2,8:11:421:2,8:80,322:-23.2287,-19.9504,-53.884,0,-27.9397,-32.1243 0|1:59:54,0,5:54:2090:0,5:0,198:-0.436609,-16.6922,-188.336,0,-172.038,-170.533 dDocent_Contig_2267 31 . C T 134.084 . AB=0.108108;ABP=101.724;AC=1;AF=0.166667;AN=6;AO=9;CIGAR=1X1M2I2M1X;DP=94;DPB=97.6;DPRA=0;EPP=22.5536;EPPR=174.557;GTI=0;LEN=1;MEANALT=2;MQM=60;MQMR=60;NS=3;NUMALT=2;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=343;QR=3134;RO=79;RPL=0;RPP=22.5536;RPPR=174.557;RPR=9;RUN=1;SAF=9;SAP=22.5536;SAR=0;SRF=79;SRP=174.557;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|1:50:42,7,1:42:1654:7,1:272,40:-9.69684,0,-133.947,-19.0436,-132.759,-154.808 0|0:20:18,1,1:18:723:1,1:37,40:0,-2.40642,-61.6846,-2.10857,-58.6906,-61.415 0|0:24:19,1,4:19:757:1,4:34,157:-7.2344,-10.2064,-72.2476,0,-59.6374,-61.1884 dDocent_Contig_2268 30 . T C 77.5005 . AB=0.222222;ABP=15.074;AC=1;AF=0.166667;AN=6;AO=4;CIGAR=1X;DP=37;DPB=37;DPRA=1.89474;EPP=11.6962;EPPR=74.6689;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=159;QR=1276;RO=33;RPL=0;RPP=11.6962;RPPR=74.6689;RPR=4;RUN=1;SAF=4;SAP=11.6962;SAR=0;SRF=33;SRP=74.6689;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:18:14,4:14:537:4:159:-9.2729,0,-43.247 0/0:13:13,0:13:515:0:0:0,-3.91339,-46.6946 0/0:6:6,0:6:224:0:0:0,-1.80618,-20.5134 dDocent_Contig_2269 16 . T A 2194.7 . AB=0.0740741;ABP=215.734;AC=0;AF=0;AN=6;AO=10;CIGAR=1X3M1X;DP=268;DPB=277.4;DPRA=0;EPP=24.725;EPPR=283.13;GTI=0;LEN=1;MEANALT=4;MQM=60;MQMR=60;NS=3;NUMALT=4;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=380;QR=4882;RO=129;RPL=0;RPP=24.725;RPPR=283.13;RPR=10;RUN=1;SAF=10;SAP=24.725;SAR=0;SRF=129;SRP=283.13;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|0:135:63,10,9,12,41:63:2399:10,9,12,41:380,350,487,1612:-113.617,-101.421,-295.179,-103.826,-269.433,-297.886,-92.4154,-258.023,-260.43,-285.574,0,-165.605,-168.011,-156.601,-184.426 0|0:60:27,0,6,6,21:27:1005:0,6,6,21:0,232,238,808:-58.1949,-66.3228,-148.576,-47.268,-129.52,-127.714,-46.7305,-128.984,-109.928,-127.178,0,-82.2463,-63.1899,-62.6529,-75.9247 0|0:73:39,0,6,8,20:39:1478:0,6,8,20:0,235,300,789:-53.1811,-64.9213,-186.095,-45.5976,-166.771,-164.964,-40.3563,-161.526,-142.202,-159.118,0,-121.176,-101.852,-96.6079,-115.156 dDocent_Contig_2270 15 . G A 245.405 . AB=0.170455;ABP=86.0198;AC=2;AF=0.333333;AN=6;AO=16;CIGAR=1X;DP=150;DPB=150;DPRA=0;EPP=37.7539;EPPR=291.816;GTI=0;LEN=1;MEANALT=1.33333;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=0.9375;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=639;QR=5294;RO=133;RPL=0;RPP=37.7539;RPPR=291.816;RPR=16;RUN=1;SAF=16;SAP=37.7539;SAR=0;SRF=133;SRP=291.816;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:62:60,1:60:2410:1:41:0,-14.6777,-212.955 0/1:58:51,7:51:2016:7:281:-8.20223,0,-164.184 0/1:30:22,8:22:868:8:317:-19.8612,0,-69.3948 dDocent_Contig_2271 53 . A G 122.928 . AB=0.119658;ABP=150.021;AC=1;AF=0.166667;AN=6;AO=20;CIGAR=1X;DP=288;DPB=288;DPRA=0;EPP=46.4397;EPPR=580.622;GTI=0;LEN=1;MEANALT=1.66667;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=781;QR=10306;RO=266;RPL=20;RPP=46.4397;RPPR=580.622;RPR=0;RUN=1;SAF=20;SAP=46.4397;SAR=0;SRF=266;SRP=580.622;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:117:102,14:102:3970:14:540:-13.8157,0,-322.228 0/0:90:89,1:89:3411:1:40:0,-23.097,-303.085 0/0:81:75,5:75:2925:5:201:0,-6.00314,-244.917 dDocent_Contig_2272 186 . A C 59.0886 . AB=0.16129;ABP=33.9012;AC=2;AF=0.333333;AN=6;AO=6;CIGAR=1X;DP=60;DPB=60;DPRA=0;EPP=16.0391;EPPR=120.27;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=237;QR=1861;RO=54;RPL=6;RPP=16.0391;RPPR=120.27;RPR=0;RUN=1;SAF=0;SAP=16.0391;SAR=6;SRF=0;SRP=120.27;SRR=54;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:29:28,1:28:984:1:40:0,-4.73419,-84.8607 0/1:11:8,3:8:282:3:118:-7.69139,0,-22.403 0/1:20:18,2:18:595:2:79:-1.47703,0,-47.825 dDocent_Contig_2273 1 . N G 248.042 . AB=0;ABP=0;AC=6;AF=1;AN=6;AO=8;CIGAR=1X;DP=8;DPB=8;DPRA=0;EPP=20.3821;EPPR=0;GTI=0;LEN=1;MEANALT=1;MQM=48.625;MQMR=0;NS=3;NUMALT=1;ODDS=1.69407e-21;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=281;QR=0;RO=0;RPL=0;RPP=20.3821;RPPR=0;RPR=8;RUN=1;SAF=0;SAP=20.3821;SAR=8;SRF=0;SRP=0;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 1/1:3:0,3:0:0:3:105:-9.79616,-0.90309,0 1/1:1:0,1:0:0:1:35:-3.08764,-0.30103,0 1/1:4:0,4:0:0:4:141:-11.4422,-1.20412,0 dDocent_Contig_2274 24 . C A 5789.81 . AB=0.87037;ABP=260.37;AC=3;AF=0.5;AN=6;AO=188;CIGAR=1X1M1X;DP=216;DPB=216;DPRA=0;EPP=411.247;EPPR=61.6401;GTI=0;LEN=1;MEANALT=1.33333;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=7211;QR=1034;RO=27;RPL=0;RPP=411.247;RPPR=61.6401;RPR=188;RUN=1;SAF=188;SAP=411.247;SAR=0;SRF=27;SRP=61.6401;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|1:119:16,102:16:617:102:3946:-319.304,0,-19.976 0|1:39:5,34:5:200:34:1320:-107.334,0,-6.63916 0|1:58:6,52:6:217:52:1945:-157.814,0,-2.41826 dDocent_Contig_2275 14 . T A 656.52 . AB=0.48;ABP=3.18402;AC=3;AF=0.5;AN=6;AO=24;CIGAR=1X;DP=50;DPB=50;DPRA=0;EPP=55.1256;EPPR=59.4686;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=0;PAIREDR=0.923077;PAO=0;PQA=0;PQR=0;PRO=0;QA=946;QR=1044;RO=26;RPL=0;RPP=55.1256;RPPR=59.4686;RPR=24;RUN=1;SAF=24;SAP=55.1256;SAR=0;SRF=26;SRP=59.4686;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:21:8,13:8:319:13:515:-40.3722,0,-22.7526 0/1:16:11,5:11:446:5:198:-13.3807,0,-35.6795 0/1:13:7,6:7:279:6:233:-17.422,0,-21.5675 dDocent_Contig_2276 92 . T A 3594 . AB=0.69;ABP=65.7224;AC=3;AF=0.5;AN=6;AO=138;CIGAR=1X;DP=200;DPB=200;DPRA=0;EPP=302.673;EPPR=137.642;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=1.38778e-17;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=4714;QR=2142;RO=62;RPL=138;RPP=302.673;RPPR=137.642;RPR=0;RUN=1;SAF=138;SAP=302.673;SAR=0;SRF=62;SRP=137.642;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:93:29,64:29:1009:64:2185:-168.924,0,-63.1275 0/1:57:11,46:11:367:46:1582:-125.514,0,-16.1927 0/1:50:22,28:22:766:28:947:-70.4852,0,-54.2104 dDocent_Contig_2277 14 . G A 2952.1 . AB=0.653333;ABP=33.6425;AC=3;AF=0.5;AN=6;AO=98;CIGAR=1X3M1X;DP=150;DPB=150;DPRA=0;EPP=215.815;EPPR=113.755;GTI=0;LEN=1;MEANALT=1.33333;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=6.93889e-18;PAIRED=0.959184;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=3835;QR=2008;RO=51;RPL=0;RPP=215.815;RPPR=113.755;RPR=98;RUN=1;SAF=98;SAP=215.815;SAR=0;SRF=51;SRP=113.755;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|1:66:21,44:21:835:44:1735:-136.426,0,-55.5097 0|1:19:7,12:7:267:12:466:-36.5702,0,-18.6715 0|1:65:23,42:23:906:42:1634:-127.737,0,-62.285 dDocent_Contig_2278 147 . A G 183.73 . AB=0.25;ABP=20.3821;AC=1;AF=0.166667;AN=6;AO=8;CIGAR=1X;DP=48;DPB=48;DPRA=4;EPP=20.3821;EPPR=89.8692;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=0;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=324;QR=1516;RO=40;RPL=0;RPP=20.3821;RPPR=89.8692;RPR=8;RUN=1;SAF=0;SAP=20.3821;SAR=8;SRF=0;SRP=89.8692;SRR=40;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:32:24,8:24:911:8:324:-19.8959,0,-72.6691 0/0:5:5,0:5:194:0:0:0,-1.50515,-17.8325 0/0:11:11,0:11:411:0:0:0,-3.31133,-37.3316 dDocent_Contig_2279 7 . G T 85.6438 . AB=0.2;ABP=30.3709;AC=1;AF=0.166667;AN=6;AO=9;CIGAR=1X;DP=118;DPB=118;DPRA=0;EPP=22.5536;EPPR=235.358;GTI=0;LEN=1;MEANALT=1.33333;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=3.46945e-18;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=277;QR=3424;RO=107;RPL=0;RPP=22.5536;RPPR=235.358;RPR=9;RUN=1;SAF=9;SAP=22.5536;SAR=0;SRF=107;SRP=235.358;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:40:39,1:39:1141:1:11:0,-10.9412,-101.834 0/0:43:40,1:40:1391:1:37:0,-9.0175,-121.758 0/1:35:28,7:28:892:7:229:-10.3883,0,-70.0236 dDocent_Contig_2280 126 . G T 68.4104 . AB=0.156863;ABP=55.1682;AC=2;AF=0.333333;AN=6;AO=12;CIGAR=1X;DP=96;DPB=96;DPRA=0;EPP=29.068;EPPR=183.243;GTI=0;LEN=1;MEANALT=1.33333;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=416;QR=2919;RO=83;RPL=0;RPP=29.068;RPPR=183.243;RPR=12;RUN=1;SAF=0;SAP=29.068;SAR=12;SRF=0;SRP=183.243;SRR=83;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:33:29,4:29:1006:4:141:-3.10304,0,-80.9131 0/1:18:14,4:14:495:4:137:-7.24926,0,-39.4657 0/0:45:40,4:40:1418:4:138:0,-0.610257,-115.205 dDocent_Contig_2281 7 . A G 5910.71 . AB=0.230144;ABP=703.847;AC=0;AF=0;AN=6;AO=255;CIGAR=1M1X4M;DP=1108;DPB=1037.83;DPRA=0;EPP=556.736;EPPR=776.054;GTI=0;LEN=1;MEANALT=8.33333;MQM=41.4314;MQMR=46.3483;NS=3;NUMALT=2;ODDS=2.22045e-16;PAIRED=0.788235;PAIREDR=0.901685;PAO=0;PQA=0;PQR=0;PRO=0;QA=7374;QR=13662;RO=356;RPL=0;RPP=556.736;RPPR=776.054;RPR=255;RUN=1;SAF=255;SAP=556.736;SAR=0;SRF=356;SRP=776.054;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|0:596:186,185,148:186:7134:185,148:6252,4293:-292.186,0,-440.601,-22.7563,-170.892,-474.503 0|0:143:43,54,36:43:1656:54,36:1839,1126:-82.0588,0,-92.1639,-9.17432,-22.6153,-106.776 0|0:369:127,137,71:127:4872:137,71:4788,1955:-222.349,0,-302.038,-114.693,-197.414,-436.593 dDocent_Contig_2284 120 . G A 39.219 . AB=0.217391;ABP=18.9659;AC=1;AF=0.166667;AN=6;AO=5;CIGAR=1X;DP=54;DPB=54;DPRA=1.48387;EPP=13.8677;EPPR=92.7497;GTI=0;LEN=1;MEANALT=1;MQM=28.2;MQMR=58.8163;NS=3;NUMALT=1;ODDS=0;PAIRED=0;PAIREDR=0.55102;PAO=0;PQA=0;PQR=0;PRO=0;QA=171;QR=1676;RO=49;RPL=0;RPP=13.8677;RPPR=109.412;RPR=5;RUN=1;SAF=0;SAP=13.8677;SAR=5;SRF=2;SRP=92.7497;SRR=47;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:23:18,5:18:624:5:171:-5.44473,0,-49.5617 0/0:12:12,0:12:402:0:0:0,-3.61236,-36.473 0/0:19:19,0:19:650:0:0:0,-5.71957,-58.4494 dDocent_Contig_2285 84 . G A 33.5595 . AB=0.166667;ABP=20.3821;AC=1;AF=0.166667;AN=6;AO=3;CIGAR=1X;DP=46;DPB=46;DPRA=1.28571;EPP=9.52472;EPPR=96.3836;GTI=0;LEN=1;MEANALT=1;MQM=40;MQMR=40;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=119;QR=1613;RO=43;RPL=3;RPP=9.52472;RPPR=96.3836;RPR=0;RUN=1;SAF=3;SAP=9.52472;SAR=0;SRF=43;SRP=96.3836;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:18:15,3:15:539:3:119:-4.87864,0,-40.5436 0/0:14:14,0:14:530:0:0:0,-4.21442,-45.2583 0/0:14:14,0:14:544:0:0:0,-4.21442,-45.9951 dDocent_Contig_2286 84 . C T 248.726 . AB=0.202381;ABP=67.6375;AC=2;AF=0.333333;AN=6;AO=22;CIGAR=1X;DP=150;DPB=150;DPRA=0;EPP=50.7827;EPPR=280.959;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=764;QR=4328;RO=128;RPL=22;RPP=50.7827;RPPR=280.959;RPR=0;RUN=1;SAF=22;SAP=50.7827;SAR=0;SRF=128;SRP=280.959;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:51:44,7:44:1508:7:240:-6.58269,0,-120.661 0/0:66:61,5:61:2048:5:175:0,-3.77428,-168.494 0/1:33:23,10:23:772:10:349:-21.8128,0,-59.858 dDocent_Contig_2287 10 . T G 231.002 . AB=0.19403;ABP=57.4916;AC=1;AF=0.166667;AN=6;AO=17;CIGAR=1X;DP=160;DPB=160;DPRA=0;EPP=39.9253;EPPR=313.531;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=650;QR=5232;RO=143;RPL=0;RPP=39.9253;RPPR=313.531;RPR=17;RUN=1;SAF=17;SAP=39.9253;SAR=0;SRF=143;SRP=313.531;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:67:54,13:54:1976:13:494:-24.623,0,-157.874 0/0:48:46,2:46:1743:2:81:0,-6.76371,-149.416 0/0:45:43,2:43:1513:2:75:0,-6.42755,-129.292 dDocent_Contig_2288 12 . A G 1668.73 . AB=0.557692;ABP=4.51363;AC=4;AF=0.666667;AN=6;AO=54;CIGAR=1X;DP=78;DPB=78;DPRA=0;EPP=120.27;EPPR=55.1256;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=3.46945e-18;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=2102;QR=964;RO=24;RPL=0;RPP=120.27;RPPR=55.1256;RPR=54;RUN=1;SAF=54;SAP=120.27;SAR=0;SRF=24;SRP=55.1256;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:29:15,14:15:600:14:537:-39.9307,0,-45.6091 0/1:23:8,15:8:323:15:591:-46.6049,0,-22.5153 1/1:26:1,25:1:41:25:974:-83.8607,-3.73221,0 dDocent_Contig_2291 112 . A G 1517.49 . AB=0.495935;ABP=3.02795;AC=3;AF=0.5;AN=6;AO=61;CIGAR=1X;DP=123;DPB=123;DPRA=0;EPP=135.47;EPPR=137.642;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=2128;QR=2126;RO=62;RPL=0;RPP=135.47;RPPR=137.642;RPR=61;RUN=1;SAF=0;SAP=135.47;SAR=61;SRF=0;SRP=137.642;SRR=62;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:86:52,34:52:1776:34:1183:-80.886,0,-134.226 0/1:9:1,8:1:29:8:276:-22.4659,0,-0.190386 0/1:28:9,19:9:321:19:669:-52.1081,0,-20.8046 dDocent_Contig_2292 26 . T A 388.3 . AB=0.196078;ABP=84.845;AC=2;AF=0.333333;AN=6;AO=23;CIGAR=1X3M;DP=145;DPB=145;DPRA=0;EPP=52.9542;EPPR=252.73;GTI=0;LEN=1;MEANALT=2.33333;MQM=60;MQMR=60;NS=3;NUMALT=2;ODDS=0;PAIRED=0.0869565;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=919;QR=4577;RO=115;RPL=0;RPP=52.9542;RPPR=252.73;RPR=23;RUN=1;SAF=23;SAP=52.9542;SAR=0;SRF=115;SRP=252.73;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|1:59:47,3,9:47:1868:3,9:120,355:-15.0529,-19.3148,-172.2,0,-143.898,-151.074 0|1:43:30,0,11:30:1190:0,11:0,441:-27.3,-36.3309,-134.281,0,-97.9455,-94.6342 0|0:43:38,1,3:38:1519:1,3:41,123:0,-8.05506,-132.859,-1.2869,-123.007,-125.488 dDocent_Contig_2294 125 . C A 15125.1 . AB=0.29515;ABP=1062.59;AC=3;AF=0.5;AN=6;AO=858;CIGAR=1X;DP=2907;DPB=2907;DPRA=0;EPP=1857.46;EPPR=4167.91;GTI=0;LEN=1;MEANALT=2.33333;MQM=47.4382;MQMR=59.0587;NS=3;NUMALT=1;ODDS=0;PAIRED=0.892774;PAIREDR=0.86812;PAO=0;PQA=0;PQR=0;PRO=0;QA=29393;QR=65603;RO=1926;RPL=4;RPP=1831.55;RPPR=4073.11;RPR=854;RUN=1;SAF=5;SAP=1822.96;SAR=853;SRF=15;SRP=4055.99;SRR=1911;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:1133:729,347:729:24870:347:11955:-627.161,0,-1906.34 0/1:658:443,192:443:15004:192:6548:-346.061,0,-1144.54 0/1:1116:754,319:754:25729:319:10890:-544.815,0,-1973.83 dDocent_Contig_2295 23 . G T 3530.69 . AB=0.187243;ABP=828.849;AC=3;AF=0.5;AN=6;AO=182;CIGAR=1X;DP=972;DPB=972;DPRA=0;EPP=398.218;EPPR=1685.95;GTI=0;LEN=1;MEANALT=1.66667;MQM=59.8736;MQMR=59.6488;NS=3;NUMALT=1;ODDS=0;PAIRED=0.824176;PAIREDR=0.655172;PAO=0;PQA=0;PQR=0;PRO=0;QA=7216;QR=31276;RO=783;RPL=0;RPP=398.218;RPPR=1703.27;RPR=182;RUN=1;SAF=182;SAP=398.218;SAR=0;SRF=781;SRP=1685.95;SRR=2;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:343:274,65:274:10985:65:2570:-128.984,0,-882.787 0/1:275:210,62:210:8340:62:2458:-139.127,0,-667.888 0/1:354:299,55:299:11951:55:2188:-90.4812,0,-967.285 dDocent_Contig_2296 27 . T A 1247.27 . AB=0.552632;ABP=4.83891;AC=3;AF=0.5;AN=6;AO=42;CIGAR=1X;DP=76;DPB=76;DPRA=0;EPP=94.2121;EPPR=76.8404;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=1690;QR=1342;RO=34;RPL=0;RPP=94.2121;RPPR=76.8404;RPR=42;RUN=1;SAF=42;SAP=94.2121;SAR=0;SRF=34;SRP=76.8404;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:28:12,16:12:468:16:641:-49.5939,0,-34.0362 0/1:17:6,11:6:237:11:448:-35.5585,0,-16.5845 0/1:31:16,15:16:637:15:601:-45.0972,0,-48.3328 dDocent_Contig_2297 13 . A T 177.888 . AB=0.333333;ABP=8.07707;AC=1;AF=0.166667;AN=6;AO=11;CIGAR=1X2M1X;DP=98;DPB=98;DPRA=1.18966;EPP=26.8965;EPPR=191.928;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=434;QR=3454;RO=87;RPL=0;RPP=26.8965;RPPR=191.928;RPR=11;RUN=1;SAF=11;SAP=26.8965;SAR=0;SRF=87;SRP=191.928;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|0:29:29,0:29:1155:0:0:0,-8.72987,-104.233 0|1:21:14,7:14:544:7:284:-19.6124,0,-42.9756 0|0:48:44,4:44:1755:4:150:0,-0.587418,-144.307 dDocent_Contig_2298 59 . G C 383.304 . AB=0.288462;ABP=23.2217;AC=1;AF=0.166667;AN=6;AO=17;CIGAR=1X;DP=114;DPB=114;DPRA=2.09091;EPP=39.9253;EPPR=213.643;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=695;QR=3891;RO=97;RPL=17;RPP=39.9253;RPPR=213.643;RPR=0;RUN=1;SAF=17;SAP=39.9253;SAR=0;SRF=97;SRP=213.643;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:52:37,15:37:1488:15:613:-39.8532,0,-118.513 0/0:22:22,0:22:883:0:0:0,-6.62266,-79.7781 0/0:40:38,2:38:1520:2:82:0,-4.26152,-129.258 dDocent_Contig_2300 7 . G C 70.8299 . AB=0.222222;ABP=15.074;AC=1;AF=0.166667;AN=6;AO=5;CIGAR=1X;DP=81;DPB=81;DPRA=0.765625;EPP=13.8677;EPPR=165.871;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=194;QR=2415;RO=75;RPL=0;RPP=13.8677;RPPR=165.871;RPR=5;RUN=1;SAF=5;SAP=13.8677;SAR=0;SRF=75;SRP=165.871;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:32:31,0:31:993:0:0:0,-9.33193,-89.5252 0/1:18:14,4:14:468:4:155:-8.9069,0,-37.0177 0/0:31:30,1:30:954:1:39:0,-5.43537,-82.2352 dDocent_Contig_2302 15 . G A 676.894 . AB=0.364865;ABP=14.748;AC=3;AF=0.5;AN=6;AO=27;CIGAR=1X;DP=74;DPB=74;DPRA=0;EPP=61.6401;EPPR=105.07;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=1049;QR=1868;RO=47;RPL=0;RPP=61.6401;RPPR=105.07;RPR=27;RUN=1;SAF=27;SAP=61.6401;SAR=0;SRF=47;SRP=105.07;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:16:4,12:4:155:12:471:-37.9257,0,-9.50617 0/1:35:27,8:27:1062:8:307:-17.4538,0,-85.3317 0/1:23:16,7:16:651:7:271:-17.8328,0,-51.9994 dDocent_Contig_2303 15 . A C 658.598 . AB=0.373134;ABP=12.3768;AC=3;AF=0.5;AN=6;AO=25;CIGAR=1X;DP=67;DPB=67;DPRA=0;EPP=57.2971;EPPR=94.2121;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=1005;QR=1642;RO=42;RPL=0;RPP=57.2971;RPPR=94.2121;RPR=25;RUN=1;SAF=25;SAP=57.2971;SAR=0;SRF=42;SRP=94.2121;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:22:13,9:13:507:9:361:-26.2312,0,-39.3476 0/1:16:12,4:12:475:4:162:-10.1505,0,-38.2808 0/1:29:17,12:17:660:12:482:-35.001,0,-50.9969 dDocent_Contig_2304 24 . C T 32.5113 . AB=0.15;ABP=24.2907;AC=1;AF=0.166667;AN=6;AO=3;CIGAR=1X;DP=99;DPB=99;DPRA=0.506329;EPP=9.52472;EPPR=209.3;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=0.968421;PAO=0;PQA=0;PQR=0;PRO=0;QA=119;QR=3779;RO=95;RPL=0;RPP=9.52472;RPPR=209.3;RPR=3;RUN=1;SAF=3;SAP=9.52472;SAR=0;SRF=95;SRP=209.3;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:33:32,0:32:1276:0:0:0,-9.63296,-114.937 0/1:20:17,3:17:669:3:119:-5.07479,0,-54.5171 0/0:46:46,0:46:1834:0:0:0,-13.8474,-165.266 dDocent_Contig_2305 10 . G A 32.606 . AB=0.129032;ABP=40.0654;AC=1;AF=0.166667;AN=6;AO=8;CIGAR=1X;DP=130;DPB=130;DPRA=0.882979;EPP=20.3821;EPPR=267.93;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=290;QR=4586;RO=122;RPL=0;RPP=20.3821;RPPR=267.93;RPR=8;RUN=1;SAF=8;SAP=20.3821;SAR=0;SRF=122;SRP=267.93;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:52:48,4:48:1821:4:134:0,-3.26879,-151.738 0/0:47:47,0:47:1757:0:0:0,-14.1484,-158.352 0/1:31:27,4:27:1008:4:156:-5.08427,0,-81.6778 dDocent_Contig_2306 11 . A G 82.1814 . AB=0.178571;ABP=28.1373;AC=1;AF=0.166667;AN=6;AO=7;CIGAR=1X;DP=171;DPB=171;DPRA=0.582278;EPP=18.2106;EPPR=359.132;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=272;QR=6061;RO=164;RPL=0;RPP=18.2106;RPPR=359.132;RPR=7;RUN=1;SAF=7;SAP=18.2106;SAR=0;SRF=164;SRP=359.132;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:79:79,0:79:2902:0:0:0,-23.7814,-261.318 0/1:28:23,5:23:873:5:201:-10.0421,0,-70.453 0/0:64:62,2:62:2286:2:71:0,-12.5243,-199.192 dDocent_Contig_2307 12 . G A 2779.81 . AB=0.397059;ABP=28.0461;AC=3;AF=0.5;AN=6;AO=108;CIGAR=1X;DP=272;DPB=272;DPRA=0;EPP=237.529;EPPR=356.96;GTI=0;LEN=1;MEANALT=1.33333;MQM=58.5833;MQMR=59.9816;NS=3;NUMALT=1;ODDS=0;PAIRED=0.944444;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=4056;QR=6221;RO=163;RPL=0;RPP=237.529;RPPR=356.96;RPR=108;RUN=1;SAF=108;SAP=237.529;SAR=0;SRF=163;SRP=356.96;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:110:58,51:58:2229:51:1875:-135.67,0,-167.582 0/1:63:28,35:28:1093:35:1332:-100.979,0,-79.6963 0/1:99:77,22:77:2899:22:849:-46.8552,0,-231.242 dDocent_Contig_2308 15 . G A 490.428 . AB=0.306452;ABP=23.184;AC=1;AF=0.166667;AN=6;AO=21;CIGAR=1X;DP=215;DPB=215;DPRA=1.15385;EPP=48.6112;EPPR=424.276;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=849;QR=7683;RO=194;RPL=0;RPP=48.6112;RPPR=424.276;RPR=21;RUN=1;SAF=21;SAP=48.6112;SAR=0;SRF=194;SRP=424.276;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:88:86,2:86:3410:2:80:0,-18.8988,-299.37 0/1:62:43,19:43:1696:19:769:-50.8667,0,-134.214 0/0:65:65,0:65:2577:0:0:0,-19.5669,-232.069 dDocent_Contig_2309 9 . A G 126.542 . AB=0.18;ABP=47.4821;AC=1;AF=0.166667;AN=6;AO=9;CIGAR=1X;DP=97;DPB=97;DPRA=2.12766;EPP=22.5536;EPPR=194.1;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=321;QR=3084;RO=88;RPL=0;RPP=22.5536;RPPR=194.1;RPR=9;RUN=1;SAF=9;SAP=22.5536;SAR=0;SRF=88;SRP=194.1;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:50:41,9:41:1403:9:321:-14.1771,0,-111.484 0/0:14:14,0:14:523:0:0:0,-4.21442,-47.4102 0/0:33:33,0:33:1158:0:0:0,-9.93399,-104.505 dDocent_Contig_2310 16 . T A 5057.33 . AB=0.0375;ABP=448.922;AC=0;AF=0;AN=6;AO=9;CIGAR=1X1M1X1M1X2M1X;DP=240;DPB=240;DPRA=0;EPP=22.5536;EPPR=48.6112;GTI=0;LEN=1;MEANALT=7.33333;MQM=60;MQMR=60;NS=3;NUMALT=5;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=338;QR=821;RO=21;RPL=0;RPP=22.5536;RPPR=48.6112;RPR=9;RUN=1;SAF=9;SAP=22.5536;SAR=0;SRF=21;SRP=48.6112;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|0:103:10,2,48,8,29,2:10:394:2,48,8,29,2:77,1894,314,1133,81:-213.555,-210.243,-242.057,-60.7211,-86.815,-78.6877,-190.74,-216.833,-67.3115,-220.747,-123.428,-149.522,0,-130.019,-147.114,-209.886,-235.979,-86.4575,-216.476,-149.164,-241.699 0|0:83:8,3,46,1,20,2:8:313:3,46,1,20,2:115,1780,37,800,82:-183.651,-176.621,-201.454,-40.1702,-56.4672,-52.0577,-183.033,-199.33,-62.8788,-208.468,-120.157,-136.454,0,-142.866,-139.873,-179.291,-195.588,-59.1361,-202,-139.124,-204.425 0|0:54:3,4,27,1,12,6:3:114:4,27,1,12,6:146,1039,38,474,242:-114.05,-103.027,-111.172,-29.6571,-27.082,-30.877,-111.836,-109.26,-35.8887,-120.884,-75.9495,-73.373,0,-82.1817,-81.6857,-95.0028,-92.4261,-19.0532,-101.235,-65.3472,-102.545 dDocent_Contig_2311 15 . T C 624.041 . AB=0.119238;ABP=1259.77;AC=3;AF=0.5;AN=6;AO=119;CIGAR=1X;DP=998;DPB=998;DPRA=0;EPP=261.416;EPPR=1911.73;GTI=0;LEN=1;MEANALT=1;MQM=49.5966;MQMR=53.6883;NS=3;NUMALT=1;ODDS=5.55112e-17;PAIRED=0.756303;PAIREDR=0.772469;PAO=0;PQA=0;PQR=0;PRO=0;QA=4637;QR=35228;RO=879;RPL=0;RPP=261.416;RPPR=1911.73;RPR=119;RUN=1;SAF=119;SAP=261.416;SAR=0;SRF=879;SRP=1911.73;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:443:391,52:391:15632:52:2028:-32.8297,0,-1120.64 0/1:251:217,34:217:8690:34:1324:-20.3733,0,-620.677 0/1:304:271,33:271:10906:33:1285:-14.7239,0,-837.058 dDocent_Contig_2312 8 . G A 716.413 . AB=0.4;ABP=9.95901;AC=3;AF=0.5;AN=6;AO=32;CIGAR=1X;DP=80;DPB=80;DPRA=0;EPP=72.4974;EPPR=107.241;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=6.93889e-18;PAIRED=0.96875;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=1114;QR=1629;RO=48;RPL=0;RPP=72.4974;RPPR=107.241;RPR=32;RUN=1;SAF=32;SAP=72.4974;SAR=0;SRF=48;SRP=107.241;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:25:16,9:16:524:9:299:-19.7034,0,-39.941 0/1:43:29,14:29:1022:14:497:-32.1143,0,-79.3372 0/1:12:3,9:3:83:9:318:-25.3453,0,-4.13088 dDocent_Contig_2313 30 . T C 1070.95 . AB=0.447059;ABP=5.07959;AC=3;AF=0.5;AN=6;AO=38;CIGAR=1X;DP=85;DPB=85;DPRA=0;EPP=85.5263;EPPR=105.07;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=1524;QR=1887;RO=47;RPL=0;RPP=85.5263;RPPR=105.07;RPR=38;RUN=1;SAF=38;SAP=85.5263;SAR=0;SRF=47;SRP=105.07;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:43:26,17:26:1047:17:676:-48.2257,0,-81.574 0/1:17:9,8:9:365:8:324:-24.4117,0,-28.0973 0/1:25:12,13:12:475:13:524:-39.9804,0,-35.5761 dDocent_Contig_2314 25 . T C 356.5 . AB=0.180952;ABP=95.8459;AC=1;AF=0.166667;AN=6;AO=25;CIGAR=1X;DP=324;DPB=324;DPRA=0;EPP=57.2971;EPPR=652.281;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=0.08;PAIREDR=0.852843;PAO=0;PQA=0;PQR=0;PRO=0;QA=1000;QR=12037;RO=299;RPL=0;RPP=57.2971;RPPR=652.281;RPR=25;RUN=1;SAF=25;SAP=57.2971;SAR=0;SRF=299;SRP=652.281;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:138:135,3:135:5420:3:117:0,-30.6336,-476.714 0/0:81:78,3:78:3129:3:119:0,-13.288,-270.588 0/1:105:86,19:86:3488:19:764:-37.4739,0,-282.326 dDocent_Contig_2315 23 . G A 2932.74 . AB=0.826446;ABP=115.012;AC=3;AF=0.5;AN=6;AO=100;CIGAR=1X;DP=121;DPB=121;DPRA=0;EPP=220.158;EPPR=48.6112;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=3715;QR=767;RO=21;RPL=0;RPP=220.158;RPPR=48.6112;RPR=100;RUN=1;SAF=100;SAP=220.158;SAR=0;SRF=21;SRP=48.6112;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:51:8,43:8:288:43:1644:-132.872,0,-10.9138 0/1:24:5,19:5:188:19:708:-56.8239,0,-10.0592 0/1:46:8,38:8:291:38:1363:-109.102,0,-12.6922 dDocent_Contig_2316 150 . T C 47.5601 . AB=0.172414;ABP=30.0414;AC=3;AF=0.5;AN=6;AO=5;CIGAR=1X;DP=29;DPB=29;DPRA=0;EPP=13.8677;EPPR=55.1256;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=196;QR=942;RO=24;RPL=0;RPP=13.8677;RPPR=55.1256;RPR=5;RUN=1;SAF=0;SAP=13.8677;SAR=5;SRF=0;SRP=55.1256;SRR=24;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:7:6,1:6:241:1:41:-1.98736,0,-19.9586 0/1:6:5,1:5:178:1:41:-2.28839,0,-14.5577 0/1:16:13,3:13:523:3:114:-5.81574,0,-42.6005 dDocent_Contig_2317 7 . A G 52980.5 . AB=0.629368;ABP=373.261;AC=3;AF=0.5;AN=6;AO=1603;CIGAR=1X1M;DP=2547;DPB=2547;DPRA=0;EPP=3483.88;EPPR=324.388;GTI=0;LEN=1;MEANALT=8;MQM=60;MQMR=60;NS=3;NUMALT=4;ODDS=0;PAIRED=0.9869;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=52586;QR=5641;RO=148;RPL=0;RPP=3483.88;RPPR=324.388;RPR=1603;RUN=1;SAF=1603;SAP=3483.88;SAR=0;SRF=148;SRP=324.388;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|1:922:71,25,248,52,486:71:2710:25,248,52,486:833,9542,2025,15573:-1794.25,-1748.21,-1963.03,-1032.19,-1187.12,-1179.88,-1649.18,-1804.12,-1088.09,-1855.87,-561.096,-716.031,0,-616.998,-637.136 0|1:770:29,52,98,38,539:29:1103:52,98,38,539:1705,3733,1452,18533:-1711.75,-1582.76,-1657.57,-1414.27,-1367.01,-1475.24,-1601.34,-1554.08,-1385.6,-1680.37,-215.753,-168.503,0,-187.08,-143.967 0|1:855:48,22,150,23,578:48:1828:22,150,23,578:700,5769,893,18480:-1797.58,-1755.67,-1899,-1338.39,-1431.98,-1443.18,-1738.65,-1832.24,-1414.96,-1881.67,-323.702,-417.304,0,-400.271,-299.655 dDocent_Contig_2318 71 . A T 149.322 . AB=0.222222;ABP=27.1378;AC=2;AF=0.333333;AN=6;AO=8;CIGAR=1X;DP=44;DPB=44;DPRA=2.25;EPP=20.3821;EPPR=81.1833;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=3.46945e-18;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=317;QR=1381;RO=36;RPL=8;RPP=20.3821;RPPR=81.1833;RPR=0;RUN=1;SAF=8;SAP=20.3821;SAR=0;SRF=36;SRP=81.1833;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:20:16,4:16:626:4:161:-8.8543,0,-50.6494 0/1:16:12,4:12:464:4:156:-9.60081,0,-37.2929 0/0:8:8,0:8:291:0:0:0,-2.40824,-26.5339 dDocent_Contig_2319 10 . C A 12684.3 . AB=0.0243161;ABP=649.627;AC=0;AF=0;AN=6;AO=8;CIGAR=1X1M1X;DP=450;DPB=450;DPRA=1.3595;EPP=20.3821;EPPR=98.5551;GTI=0;LEN=1;MEANALT=2;MQM=60;MQMR=60;NS=3;NUMALT=2;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=289;QR=1705;RO=44;RPL=0;RPP=20.3821;RPPR=98.5551;RPR=8;RUN=1;SAF=8;SAP=20.3821;SAR=0;SRF=44;SRP=98.5551;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|0:291:26,5,260:26:993:5,260:192,10165:-827.777,-819.845,-899.8,0,-65.7003,-3.1909 0|0:38:9,3,26:9:352:3,26:97,1030:-82.1247,-77.0211,-105.058,0,-21.1885,-21.1653 0|0:121:9,0,111:9:360:0,111:0,4387:-362.046,-364.755,-394.411,-3.48957,-33.4143,0 dDocent_Contig_2320 98 . N A 95.9228 . AB=0;ABP=0;AC=4;AF=1;AN=4;AO=3;CIGAR=4X;DP=3;DPB=27.5;DPRA=0;EPP=9.52472;EPPR=0;GTI=0;LEN=1;MEANALT=1;MQM=48;MQMR=0;NS=2;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=0;PAO=50;PQA=1596;PQR=0;PRO=0;QA=104;QR=0;RO=0;RPL=3;RPP=9.52472;RPPR=0;RPR=0;RUN=1;SAF=3;SAP=9.52472;SAR=0;SRF=0;SRP=0;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL .:.:.:.:.:.:.:. 1|1:2:0,2:0:0:2:69:-6.17413,-0.60206,0 1|1:1:0,1:0:0:1:35:-3.11533,-0.30103,0 dDocent_Contig_2321 7 . T A 16804.3 . AB=0.105686;ABP=2354.25;AC=0;AF=0;AN=6;AO=184;CIGAR=1X3M1X;DP=1741;DPB=1741.2;DPRA=0;EPP=402.561;EPPR=1738.03;GTI=0;LEN=1;MEANALT=12.6667;MQM=41.3424;MQMR=47.4844;NS=3;NUMALT=2;ODDS=0;PAIRED=0.98913;PAIREDR=0.498132;PAO=0.5;PQA=17.5;PQR=0;PRO=0;QA=6943;QR=30765;RO=803;RPL=0;RPP=402.561;RPPR=1746.7;RPR=184;RUN=1;SAF=184;SAP=402.561;SAR=0;SRF=802;SRP=1738.03;SRR=1;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|0:1000:413,112,419:413:15857:112,419:4234,16671:-1109,-908.56,-2010.92,0,-811.303,-1009.95 0|0:325:209,34,65:209:7936:34,65:1263,2571:-110.142,-74.875,-631.379,0,-468.56,-547.167 0|0:416:181,38,182:181:6972:38,182:1446,7215:-466.805,-411.175,-849.67,0,-339.802,-395.137 dDocent_Contig_2323 10 . G C 8552.16 . AB=0.80758;ABP=284.865;AC=3;AF=0.5;AN=6;AO=277;CIGAR=1X;DP=343;DPB=343;DPRA=0;EPP=604.508;EPPR=146.327;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=10709;QR=2464;RO=66;RPL=0;RPP=604.508;RPPR=146.327;RPR=277;RUN=1;SAF=277;SAP=604.508;SAR=0;SRF=66;SRP=146.327;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:163:34,129:34:1266:129:4950:-396.373,0,-65.1286 0/1:76:9,67:9:329:67:2597:-210.998,0,-7.07721 0/1:104:23,81:23:869:81:3162:-253.367,0,-47.205 dDocent_Contig_2324 98 . N C 1526.98 . AB=0;ABP=0;AC=6;AF=1;AN=6;AO=51;CIGAR=1X;DP=51;DPB=51;DPRA=0;EPP=113.755;EPPR=0;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=0;NS=3;NUMALT=1;ODDS=0;PAIRED=0.960784;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=1681;QR=0;RO=0;RPL=51;RPP=113.755;RPPR=0;RPR=0;RUN=1;SAF=51;SAP=113.755;SAR=0;SRF=0;SRP=0;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 1/1:20:0,20:0:0:20:678:-61.3378,-6.0206,0 1/1:12:0,12:0:0:12:384:-34.8679,-3.61236,0 1/1:19:0,19:0:0:19:619:-56.0154,-5.71957,0 dDocent_Contig_2325 167 . A T 67.5577 . AB=0.2;ABP=18.6449;AC=1;AF=0.166667;AN=6;AO=4;CIGAR=1X;DP=58;DPB=58;DPRA=1.05263;EPP=11.6962;EPPR=120.27;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=158;QR=2172;RO=54;RPL=4;RPP=11.6962;RPPR=120.27;RPR=0;RUN=1;SAF=0;SAP=11.6962;SAR=4;SRF=0;SRP=120.27;SRR=54;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:13:13,0:13:522:0:0:0,-3.91339,-47.3267 0/0:25:25,0:25:1001:0:0:0,-7.52575,-90.388 0/1:20:16,4:16:649:4:158:-8.57967,0,-52.7231 dDocent_Contig_2326 107 . N A 102.442 . AB=0;ABP=0;AC=4;AF=1;AN=4;AO=3;CIGAR=1X;DP=3;DPB=3;DPRA=0;EPP=9.52472;EPPR=0;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=0;NS=2;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=103;QR=0;RO=0;RPL=0;RPP=9.52472;RPPR=0;RPR=3;RUN=1;SAF=0;SAP=9.52472;SAR=3;SRF=0;SRP=0;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL ./.:.:.:.:.:.:.:. 1/1:1:0,1:0:0:1:32:-3.19931,-0.30103,0 1/1:2:0,2:0:0:2:71:-6.74206,-0.60206,0 dDocent_Contig_2327 107 . N T 125.752 . AB=0;ABP=0;AC=2;AF=1;AN=2;AO=4;CIGAR=1X;DP=4;DPB=4;DPRA=0;EPP=11.6962;EPPR=0;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=0;NS=1;NUMALT=1;ODDS=7.37776;PAIRED=1;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=136;QR=0;RO=0;RPL=0;RPP=11.6962;RPPR=0;RPR=4;RUN=1;SAF=0;SAP=11.6962;SAR=4;SRF=0;SRP=0;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 1/1:4:0,4:0:0:4:136:-12.575,-1.20412,0 ./.:.:.:.:.:.:.:. ./.:.:.:.:.:.:.:. dDocent_Contig_2328 10 . A T 3700.68 . AB=0.0847682;ABP=1133.7;AC=0;AF=0;AN=6;AO=64;CIGAR=1X5M;DP=755;DPB=738.667;DPRA=0;EPP=141.985;EPPR=700.053;GTI=0;LEN=1;MEANALT=5.66667;MQM=40.5781;MQMR=53.2212;NS=3;NUMALT=5;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=2250;QR=12296;RO=321;RPL=0;RPP=141.985;RPPR=700.053;RPR=64;RUN=1;SAF=64;SAP=141.985;SAR=0;SRF=321;SRP=700.053;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|0:418:190,52,6,24,58,87:190:7246:52,6,24,58,87:1940,239,870,2257,3464:-227.934,-127.575,-689.513,-265.451,-685.488,-841.239,-217.786,-637.821,-775.699,-788.154,-99.6633,-519.7,-657.578,-609.912,-659.798,0,-420.04,-557.918,-510.252,-392.13,-551.408 0|0:83:42,5,0,4,15,13:42:1603:5,0,4,15,13:200,0,136,592,515:-36.0714,-32.4233,-160.377,-48.7147,-161.883,-178.174,-38.4463,-151.61,-167.901,-166.697,0,-113.169,-129.46,-119.188,-124.945,-6.3234,-119.492,-135.784,-125.512,-87.0689,-131.87 0|0:254:89,41,13,36,29,43:89:3447:41,13,36,29,43:1558,504,1244,1106,1683:-111.585,-11.9841,-273.485,-96.9709,-244.422,-366.901,-42.3401,-189.788,-274.773,-305.341,-47.6599,-195.111,-280.098,-225.463,-312.774,0,-147.453,-232.44,-177.805,-183.129,-260.902 dDocent_Contig_2329 23 . T C 101.696 . AB=0.238095;ABP=15.5221;AC=1;AF=0.166667;AN=6;AO=5;CIGAR=1X;DP=42;DPB=42;DPRA=2;EPP=13.8677;EPPR=83.3548;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=0.4;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=196;QR=1490;RO=37;RPL=0;RPP=13.8677;RPPR=83.3548;RPR=5;RUN=1;SAF=5;SAP=13.8677;SAR=0;SRF=37;SRP=83.3548;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:21:16,5:16:651:5:196:-11.6925,0,-52.6015 0/0:13:13,0:13:516:0:0:0,-3.91339,-46.784 0/0:8:8,0:8:323:0:0:0,-2.40824,-29.439 dDocent_Contig_2330 88 . T C 482.038 . AB=0.245455;ABP=64.917;AC=1;AF=0.166667;AN=6;AO=30;CIGAR=1X;DP=202;DPB=202;DPRA=1.74444;EPP=68.1545;EPPR=376.504;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=1022;QR=5839;RO=172;RPL=30;RPP=68.1545;RPPR=376.504;RPR=0;RUN=1;SAF=30;SAP=68.1545;SAR=0;SRF=172;SRP=376.504;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:110:83,27:83:2857:27:917:-49.7267,0,-224.268 0/0:47:44,3:44:1489:3:105:0,-4.35225,-124.506 0/0:45:45,0:45:1493:0:0:0,-13.5463,-134.658 dDocent_Contig_2331 7 . G A 85.5704 . AB=0.134328;ABP=80.8268;AC=2;AF=0.333333;AN=6;AO=10;CIGAR=1X;DP=109;DPB=109;DPRA=0;EPP=24.725;EPPR=215.815;GTI=0;LEN=1;MEANALT=1.33333;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=0.6;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=388;QR=3243;RO=98;RPL=0;RPP=24.725;RPPR=215.815;RPR=10;RUN=1;SAF=10;SAP=24.725;SAR=0;SRF=98;SRP=215.815;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:48:42,6:42:1457:6:234:-6.98166,0,-116.945 0/0:42:40,1:40:1362:1:38:0,-8.78982,-119.179 0/1:19:16,3:16:424:3:116:-5.09813,0,-32.6893 dDocent_Contig_2332 39 . C T 544.699 . AB=0.166667;ABP=20.3821;AC=0;AF=0;AN=6;AO=3;CIGAR=1X2M1X;DP=56;DPB=56;DPRA=0;EPP=9.52472;EPPR=68.1545;GTI=0;LEN=1;MEANALT=2;MQM=60;MQMR=60;NS=3;NUMALT=2;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=118;QR=1185;RO=30;RPL=0;RPP=9.52472;RPPR=68.1545;RPR=3;RUN=1;SAF=3;SAP=9.52472;SAR=0;SRF=30;SRP=68.1545;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|0:22:13,0,8:13:515:0,8:0,324:-22.8159,-26.7293,-69.1128,0,-42.3934,-39.9851 0|0:18:10,3,5:10:397:3,5:118,195:-13.0143,-6.31654,-38.1003,0,-22.979,-31.1798 0|0:16:7,0,8:7:273:0,8:0,319:-24.1626,-26.2698,-48.704,0,-22.4294,-20.0212 dDocent_Contig_2333 146 . C G 219.795 . AB=0.333333;ABP=10.2485;AC=1;AF=0.166667;AN=6;AO=10;CIGAR=1X;DP=114;DPB=114;DPRA=0.714286;EPP=24.725;EPPR=228.843;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=361;QR=3687;RO=104;RPL=0;RPP=24.725;RPPR=228.843;RPR=10;RUN=1;SAF=0;SAP=24.725;SAR=10;SRF=0;SRP=228.843;SRR=104;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:64:64,0:64:2279:0:0:0,-19.2659,-205.373 0/0:20:20,0:20:701:0:0:0,-6.0206,-63.4138 0/1:30:20,10:20:707:10:361:-23.8034,0,-54.9242 dDocent_Contig_2334 7 . A G 1573.15 . AB=0.420732;ABP=11.961;AC=3;AF=0.5;AN=6;AO=69;CIGAR=1X;DP=164;DPB=164;DPRA=0;EPP=152.842;EPPR=202.786;GTI=0;LEN=1;MEANALT=2;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=2343;QR=3538;RO=92;RPL=0;RPP=152.842;RPPR=202.786;RPR=69;RUN=1;SAF=69;SAP=152.842;SAR=0;SRF=92;SRP=202.786;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:67:30,36:30:1157:36:1186:-87.0266,0,-84.4429 0/1:32:20,11:20:776:11:378:-24.7751,0,-60.5988 0/1:65:42,22:42:1605:22:779:-51.0365,0,-125.336 dDocent_Contig_2336 24 . G A 5371.16 . AB=0.71308;ABP=96.4752;AC=3;AF=0.5;AN=6;AO=169;CIGAR=1X;DP=237;DPB=237;DPRA=0;EPP=369.989;EPPR=148.499;GTI=0;LEN=1;MEANALT=1.33333;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=1.38778e-17;PAIRED=0.852071;PAIREDR=0.880597;PAO=0;PQA=0;PQR=0;PRO=0;QA=6818;QR=2704;RO=67;RPL=0;RPP=369.989;RPPR=148.499;RPR=169;RUN=1;SAF=169;SAP=369.989;SAR=0;SRF=67;SRP=148.499;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:113:27,85:27:1087:85:3433:-274.876,0,-63.9922 0/1:64:26,38:26:1064:38:1532:-118.85,0,-76.7776 0/1:60:14,46:14:553:46:1853:-148.913,0,-32.0454 dDocent_Contig_2337 121 . G T 43.4483 . AB=0.162162;ABP=39.6906;AC=2;AF=0.333333;AN=6;AO=7;CIGAR=1X;DP=53;DPB=53;DPRA=0;EPP=18.2106;EPPR=102.898;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=238;QR=1585;RO=46;RPL=0;RPP=18.2106;RPPR=102.898;RPR=7;RUN=1;SAF=0;SAP=18.2106;SAR=7;SRF=0;SRP=102.898;SRR=46;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:23:19,4:19:662:4:134:-5.46752,0,-52.9819 0/1:14:12,2:12:412:2:69:-2.33824,0,-33.1954 0/0:16:15,1:15:511:1:35:0,-1.31785,-42.8158 dDocent_Contig_2338 7 . G A 1280.25 . AB=0.4;ABP=12.5648;AC=3;AF=0.5;AN=6;AO=44;CIGAR=1X2M1X2M;DP=110;DPB=110;DPRA=0;EPP=98.5551;EPPR=74.6689;GTI=0;LEN=1;MEANALT=3;MQM=60;MQMR=60;NS=3;NUMALT=3;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=1676;QR=1125;RO=33;RPL=0;RPP=98.5551;RPPR=74.6689;RPR=44;RUN=1;SAF=44;SAP=98.5551;SAR=0;SRF=33;SRP=74.6689;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|1:37:9,17,7,4:9:298:17,7,4:656,273,160:-51.1601,0,-18.9514,-31.4303,-1.61703,-53.4028,-40.6874,-10.8802,-42.3255,-63.565 0|1:38:14,17,6,0:14:485:17,6,0:635,234,0:-47.7687,0,-34.266,-32.7448,-20.1374,-70.3375,-51.9831,-39.3835,-72.1436,-91.3823 1|0:35:10,10,11,4:10:342:10,11,4:385,412,151:-34.616,-6.01087,-30.7402,-3.88925,0,-28.3139,-25.2501,-21.371,-19.2463,-51.7868 dDocent_Contig_2339 165 . G T 125.068 . AB=0.230769;ABP=19.3799;AC=1;AF=0.166667;AN=6;AO=11;CIGAR=1X;DP=201;DPB=201;DPRA=0;EPP=26.8965;EPPR=415.59;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=443;QR=7564;RO=190;RPL=11;RPP=26.8965;RPPR=415.59;RPR=0;RUN=1;SAF=0;SAP=26.8965;SAR=11;SRF=0;SRP=415.59;SRR=190;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:122:119,3:119:4741:3:120:0,-25.5378,-415.414 0/1:26:20,6:20:780:6:242:-14.3307,0,-62.6883 0/0:53:51,2:51:2043:2:81:0,-8.26886,-176.365 dDocent_Contig_2340 11 . A G 79.3388 . AB=0.285714;ABP=8.59409;AC=1;AF=0.166667;AN=6;AO=4;CIGAR=2X;DP=71;DPB=71;DPRA=0.491228;EPP=11.6962;EPPR=148.499;GTI=0;LEN=1;MEANALT=1;MQM=51;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=0;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=152;QR=2571;RO=67;RPL=0;RPP=11.6962;RPPR=148.499;RPR=4;RUN=1;SAF=4;SAP=11.6962;SAR=0;SRF=67;SRP=148.499;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|0:39:39,0:39:1501:0:0:0,-11.7402,-135.349 0|0:18:18,0:18:696:0:0:0,-5.41854,-62.9661 0|1:14:10,4:10:374:4:152:-9.75779,0,-29.7894 dDocent_Contig_2341 94 . G T 361.323 . AB=0.162679;ABP=209.57;AC=3;AF=0.5;AN=6;AO=34;CIGAR=1X;DP=209;DPB=209;DPRA=0;EPP=76.8404;EPPR=383.018;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=1151;QR=5950;RO=175;RPL=34;RPP=76.8404;RPPR=383.018;RPR=0;RUN=1;SAF=34;SAP=76.8404;SAR=0;SRF=175;SRP=383.018;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:116:102,14:102:3439:14:475:-8.15488,0,-274.817 0/1:52:41,11:41:1406:11:365:-17.5174,0,-111.184 0/1:41:32,9:32:1105:9:311:-15.9829,0,-87.4162 dDocent_Contig_2342 160 . T C 40.0745 . AB=0.272727;ABP=7.94546;AC=1;AF=0.166667;AN=6;AO=3;CIGAR=1X;DP=26;DPB=26;DPRA=1.46667;EPP=9.52472;EPPR=52.9542;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=98;QR=883;RO=23;RPL=3;RPP=9.52472;RPPR=52.9542;RPR=0;RUN=1;SAF=0;SAP=9.52472;SAR=3;SRF=0;SRP=52.9542;SRR=23;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:6:6,0:6:232:0:0:0,-1.80618,-21.2489 0/0:9:9,0:9:343:0:0:0,-2.70927,-31.2269 0/1:11:8,3:8:308:3:98:-5.83129,0,-24.7708 dDocent_Contig_2343 110 . T G 1278.76 . AB=0.75;ABP=13.8677;AC=6;AF=1;AN=6;AO=42;CIGAR=1X2M1X;DP=48;DPB=48;DPRA=0;EPP=94.2121;EPPR=0;GTI=0;LEN=1;MEANALT=1.66667;MQM=53.2619;MQMR=0;NS=3;NUMALT=2;ODDS=0;PAIRED=0.833333;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=1427;QR=0;RO=0;RPL=0;RPP=94.2121;RPPR=0;RPR=42;RUN=1;SAF=0;SAP=94.2121;SAR=42;SRF=0;SRP=0;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 1|1:20:0,5,15:0:0:5,15:174,519:-55.6395,-41.4971,-39.9919,-14.4877,0,-9.97225 1|1:2:0,0,2:0:0:0,2:0,68:-6.45793,-6.45793,-6.45793,-0.60206,-0.60206,0 1|1:26:0,0,25:0:0:0,25:0,840:-67.3008,-67.3008,-67.3008,-7.52575,-7.52575,0 dDocent_Contig_2344 42 . G A 954.48 . AB=0.404494;ABP=10.0615;AC=3;AF=0.5;AN=6;AO=36;CIGAR=1X;DP=89;DPB=89;DPRA=0;EPP=81.1833;EPPR=118.098;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=0.916667;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=1408;QR=2098;RO=53;RPL=0;RPP=81.1833;RPPR=118.098;RPR=36;RUN=1;SAF=36;SAP=81.1833;SAR=0;SRF=53;SRP=118.098;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:50:33,17:33:1321:17:662:-44.8595,0,-104.099 0/1:13:7,6:7:267:6:231:-17.2422,0,-20.4736 0/1:26:13,13:13:510:13:515:-38.8692,0,-38.4148 dDocent_Contig_2345 7 . A G 3516.55 . AB=0.679803;ABP=60.0141;AC=3;AF=0.5;AN=6;AO=138;CIGAR=1X;DP=203;DPB=203;DPRA=0;EPP=302.673;EPPR=131.127;GTI=0;LEN=1;MEANALT=2.33333;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=4623;QR=2226;RO=59;RPL=0;RPP=302.673;RPPR=131.127;RPR=138;RUN=1;SAF=138;SAP=302.673;SAR=0;SRF=59;SRP=131.127;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:107:24,79:24:908:79:2552:-198.73,0,-50.8636 0/1:37:10,26:10:380:26:937:-73.6835,0,-23.5826 0/1:59:25,33:25:938:33:1134:-84.7639,0,-67.1487 dDocent_Contig_2346 7 . A G 3784.13 . AB=0.222749;ABP=284.767;AC=5;AF=0.833333;AN=6;AO=94;CIGAR=1X9M;DP=422;DPB=393.5;DPRA=0;EPP=207.129;EPPR=194.1;GTI=0;LEN=1;MEANALT=10;MQM=60;MQMR=60;NS=3;NUMALT=4;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=3183;QR=3401;RO=88;RPL=0;RPP=207.129;RPPR=194.1;RPR=94;RUN=1;SAF=94;SAP=207.129;SAR=0;SRF=88;SRP=194.1;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|1:142:50,10,7,30,33:50:1921:10,7,30,33:360,229,1006,1126:-76.2974,-61.9763,-216.675,-72.8563,-201.193,-228.456,-9.88926,-138.23,-149.109,-158.569,0,-128.343,-139.221,-76.2608,-147.779 1|1:142:18,10,34,47,28:18:704:10,34,47,28:358,1180,1588,977:-161.295,-137.52,-192.401,-70.8022,-99.5021,-118.46,-38.0132,-66.7139,0,-81.7577,-87.2563,-115.956,-49.2396,-16.4527,-136.719 1|1:138:20,9,16,51,33:20:776:9,16,51,33:302,507,1604,1080:-146.344,-127.907,-188.968,-111.57,-150.884,-170.524,-23.4313,-62.75,-46.4151,-71.8532,-65.15,-104.466,-88.1301,0,-118.989 dDocent_Contig_2348 82 . G T 1230.88 . AB=0.324176;ABP=51.8804;AC=3;AF=0.5;AN=6;AO=59;CIGAR=1X;DP=182;DPB=182;DPRA=0;EPP=131.127;EPPR=270.101;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=2027;QR=4183;RO=123;RPL=59;RPP=131.127;RPPR=270.101;RPR=0;RUN=1;SAF=59;SAP=131.127;SAR=0;SRF=123;SRP=270.101;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:83:54,29:54:1844:29:994:-64.7855,0,-141.257 0/1:40:30,10:30:999:10:349:-19.7056,0,-78.1728 0/1:59:39,20:39:1340:20:684:-44.1198,0,-103.139 dDocent_Contig_2349 27 . T C 7325.77 . AB=0.711656;ABP=129.862;AC=3;AF=0.5;AN=6;AO=232;CIGAR=1X1M1X3M1X;DP=326;DPB=326;DPRA=0;EPP=506.792;EPPR=157.185;GTI=0;LEN=1;MEANALT=3;MQM=60;MQMR=60;NS=3;NUMALT=3;ODDS=2.77556e-17;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=9109;QR=2753;RO=71;RPL=0;RPP=506.792;RPPR=157.185;RPR=232;RUN=1;SAF=232;SAP=506.792;SAR=0;SRF=71;SRP=157.185;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|1:171:42,128,0,0:42:1629:128,0,0:5014,0,0:-399.613,0,-95.2745,-412.256,-133.806,-546.083,-412.256,-133.806,-546.083,-546.083 1|0:73:8,52,2,11:8:316:52,2,11:2023,81,441:-174.158,-10.3343,-20.6817,-169.887,-29.6555,-195.289,-140.231,0,-159.556,-162.924 0|1:82:21,52,5,3:21:808:52,5,3:2072,185,117:-164.329,0,-50.6867,-155.521,-51.2107,-220.344,-161.035,-56.7234,-212.233,-226.46 dDocent_Contig_2350 7 . G T 383.699 . AB=0.46875;ABP=3.28173;AC=1;AF=0.166667;AN=6;AO=27;CIGAR=1X;DP=185;DPB=185;DPRA=0;EPP=61.6401;EPPR=343.931;GTI=0;LEN=1;MEANALT=1.33333;MQM=59.9259;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=0.993631;PAO=0;PQA=0;PQR=0;PRO=0;QA=907;QR=5000;RO=157;RPL=0;RPP=61.6401;RPPR=343.931;RPR=27;RUN=1;SAF=27;SAP=61.6401;SAR=0;SRF=157;SRP=343.931;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:111:102,8:102:3019:8:234:0,-11.9055,-250.562 0/0:42:38,4:38:1420:4:123:0,-1.27274,-116.715 0/1:32:17,15:17:561:15:550:-40.1938,0,-41.1621 dDocent_Contig_2351 39 . T C 439.921 . AB=0.6;ABP=5.18177;AC=1;AF=0.166667;AN=6;AO=15;CIGAR=1X;DP=64;DPB=64;DPRA=1.28205;EPP=35.5824;EPPR=109.412;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=589;QR=1938;RO=49;RPL=0;RPP=35.5824;RPPR=109.412;RPR=15;RUN=1;SAF=15;SAP=35.5824;SAR=0;SRF=49;SRP=109.412;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:25:25,0:25:992:0:0:0,-7.52575,-89.5748 0/1:25:10,15:10:395:15:589:-45.816,0,-28.3808 0/0:14:14,0:14:551:0:0:0,-4.21442,-49.9313 dDocent_Contig_2352 105 . N A 1177.19 . AB=0;ABP=0;AC=6;AF=1;AN=6;AO=41;CIGAR=3X;DP=41;DPB=41;DPRA=0;EPP=92.0407;EPPR=0;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=0;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=1293;QR=0;RO=0;RPL=0;RPP=92.0407;RPPR=0;RPR=41;RUN=1;SAF=0;SAP=92.0407;SAR=41;SRF=0;SRP=0;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 1|1:16:0,16:0:0:16:498:-45.1185,-4.81648,0 1|1:2:0,2:0:0:2:54:-5.12954,-0.60206,0 1|1:23:0,23:0:0:23:741:-66.9931,-6.92369,0 dDocent_Contig_2353 21 . C T 564.637 . AB=0.666667;ABP=9.52472;AC=1;AF=0.166667;AN=6;AO=18;CIGAR=1X;DP=57;DPB=57;DPRA=1.8;EPP=42.0968;EPPR=87.6977;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=731;QR=1554;RO=39;RPL=0;RPP=42.0968;RPPR=87.6977;RPR=18;RUN=1;SAF=18;SAP=42.0968;SAR=0;SRF=39;SRP=87.6977;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:27:9,18:9:362:18:731:-57.9866,0,-24.8146 0/0:19:19,0:19:747:0:0:0,-5.71957,-67.5511 0/0:11:11,0:11:445:0:0:0,-3.31133,-40.4061 dDocent_Contig_2354 14 . G C 1970.39 . AB=0.446043;ABP=6.52527;AC=4;AF=0.666667;AN=6;AO=62;CIGAR=7M1X4M;DP=139;DPB=141.333;DPRA=0;EPP=137.642;EPPR=94.2121;GTI=0;LEN=1;MEANALT=3;MQM=55.1129;MQMR=57.5714;NS=3;NUMALT=3;ODDS=2.77556e-17;PAIRED=0;PAIREDR=0.690476;PAO=0;PQA=0;PQR=0;PRO=0;QA=2422;QR=1629;RO=42;RPL=0;RPP=137.642;RPPR=94.2121;RPR=62;RUN=1;SAF=62;SAP=137.642;SAR=0;SRF=42;SRP=94.2121;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 1|1:61:15,21,4,20:15:586:21,4,20:796,153,811:-79.5994,-18.8645,-60.3973,-74.981,-57.5869,-121.629,-17.3976,0,-56.1255,-59.2385 0|1:18:11,2,0,5:11:427:2,0,5:70,0,200:-12.7874,-10.4149,-44.8624,-16.0987,-45.4645,-51.1557,0,-29.3939,-35.0836,-33.5784 0|1:60:16,5,0,37:16:616:5,0,37:191,0,1411:-110.175,-99.3202,-148.37,-114.992,-149.875,-165.546,0,-34.8879,-50.5591,-39.421 dDocent_Contig_2356 13 . A T 2107.53 . AB=0.0515464;ABP=341.894;AC=0;AF=0;AN=6;AO=10;CIGAR=2X;DP=194;DPB=194;DPRA=0;EPP=24.725;EPPR=105.87;GTI=0;LEN=1;MEANALT=2;MQM=47.4;MQMR=51.7368;NS=3;NUMALT=2;ODDS=0;PAIRED=0;PAIREDR=0.25;PAO=0;PQA=0;PQR=0;PRO=0;QA=391;QR=2983;RO=76;RPL=0;RPP=24.725;RPPR=168.042;RPR=10;RUN=1;SAF=10;SAP=24.725;SAR=0;SRF=68;SRP=105.87;SRR=8;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|0:64:24,3,37:24:951:3,37:121,1476:-85.6575,-82.9012,-159.875,0,-67.862,-66.6991 0|0:70:24,4,42:24:914:4,42:155,1650:-81.7844,-79.6179,-144.322,0,-56.5377,-53.2772 0|0:60:28,3,29:28:1118:3,29:115,1160:-48.8336,-48.9197,-133.201,0,-76.8208,-76.4225 dDocent_Contig_2357 138 . C T 244.321 . AB=0.161017;ABP=120.785;AC=1;AF=0.166667;AN=6;AO=39;CIGAR=1X;DP=444;DPB=444;DPRA=0;EPP=87.6977;EPPR=882.457;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=1438;QR=15477;RO=405;RPL=0;RPP=87.6977;RPPR=882.457;RPR=39;RUN=1;SAF=0;SAP=87.6977;SAR=39;SRF=0;SRP=882.457;SRR=405;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:211:198,13:198:7573:13:496:0,-18.5345,-636.29 0/1:118:99,19:99:3710:19:683:-26.256,0,-298.442 0/0:115:108,7:108:4194:7:259:0,-10.9579,-353.785 dDocent_Contig_2358 18 . C T 301.632 . AB=0.110738;ABP=395.216;AC=1;AF=0.166667;AN=6;AO=52;CIGAR=1X;DP=665;DPB=665;DPRA=0;EPP=115.927;EPPR=1334.12;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=2104;QR=24641;RO=613;RPL=0;RPP=115.927;RPPR=1334.12;RPR=52;RUN=1;SAF=52;SAP=115.927;SAR=0;SRF=613;SRP=1334.12;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:298:265,33:265:10680:33:1346:-31.6861,0,-870.728 0/0:119:112,7:112:4495:7:280:0,-10.2514,-378.91 0/0:248:236,12:236:9466:12:478:0,-31.2858,-807.942 dDocent_Contig_2360 8 . T G 70.1905 . AB=0.15;ABP=45.5712;AC=1;AF=0.166667;AN=6;AO=15;CIGAR=1X;DP=228;DPB=228;DPRA=0;EPP=35.5824;EPPR=465.534;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=0.943662;PAO=0;PQA=0;PQR=0;PRO=0;QA=575;QR=8111;RO=213;RPL=0;RPP=35.5824;RPPR=465.534;RPR=15;RUN=1;SAF=15;SAP=35.5824;SAR=0;SRF=213;SRP=465.534;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:122:116,6:116:4422:6:230:0,-15.6593,-376.979 0/1:40:34,6:34:1279:6:228:-8.84296,0,-103.36 0/0:66:63,3:63:2410:3:117:0,-8.9576,-206.197 dDocent_Contig_2362 7 . C A 111.308 . AB=0.172414;ABP=57.0725;AC=3;AF=0.5;AN=6;AO=10;CIGAR=1X;DP=58;DPB=58;DPRA=0;EPP=24.725;EPPR=107.241;GTI=0;LEN=1;MEANALT=1;MQM=55;MQMR=59.0833;NS=3;NUMALT=1;ODDS=0;PAIRED=0.9;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=387;QR=1832;RO=48;RPL=0;RPP=24.725;RPPR=107.241;RPR=10;RUN=1;SAF=10;SAP=24.725;SAR=0;SRF=48;SRP=107.241;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:20:16,4:16:607:4:156:-6.54346,0,-48.9119 0/1:13:10,3:10:382:3:117:-6.99451,0,-30.8217 0/1:25:22,3:22:843:3:114:-3.10446,0,-68.5619 dDocent_Contig_2363 8 . T C 545.887 . AB=0.142857;ABP=359.752;AC=3;AF=0.5;AN=6;AO=46;CIGAR=1X;DP=322;DPB=322;DPRA=0;EPP=102.898;EPPR=602.337;GTI=0;LEN=1;MEANALT=1;MQM=52.3913;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=0.956522;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=1761;QR=10578;RO=276;RPL=0;RPP=102.898;RPPR=602.337;RPR=46;RUN=1;SAF=46;SAP=102.898;SAR=0;SRF=276;SRP=602.337;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:151:134,17:134:5126:17:647:-12.9238,0,-415.896 0/1:68:51,17:51:1959:17:653:-37.0799,0,-156.076 0/1:103:91,12:91:3493:12:461:-10.1078,0,-283.494 dDocent_Contig_2364 72 . G T 149.364 . AB=0.207547;ABP=42.3836;AC=2;AF=0.333333;AN=6;AO=11;CIGAR=1X;DP=65;DPB=65;DPRA=2.20833;EPP=26.8965;EPPR=120.27;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=3.46945e-18;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=375;QR=1755;RO=54;RPL=11;RPP=26.8965;RPPR=120.27;RPR=0;RUN=1;SAF=11;SAP=26.8965;SAR=0;SRF=54;SRP=120.27;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:35:28,7:28:867:7:244:-11.7639,0,-67.7807 0/0:12:12,0:12:413:0:0:0,-3.61236,-37.4998 0/1:18:14,4:14:475:4:131:-6.6954,0,-37.6557 dDocent_Contig_2365 38 . A G 5226.01 . AB=0.721519;ABP=104.025;AC=3;AF=0.5;AN=6;AO=171;CIGAR=1X;DP=237;DPB=237;DPRA=0;EPP=374.332;EPPR=146.327;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=1.38778e-17;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=6655;QR=2605;RO=66;RPL=0;RPP=374.332;RPPR=146.327;RPR=171;RUN=1;SAF=171;SAP=374.332;SAR=0;SRF=66;SRP=146.327;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:116:37,79:37:1455:79:3058:-240.386,0,-96.2832 0/1:60:15,45:15:594:45:1734:-138.222,0,-35.7356 0/1:61:14,47:14:556:47:1863:-149.515,0,-32.0206 dDocent_Contig_2366 36 . G C 1453.26 . AB=0.329412;ABP=45.9799;AC=3;AF=0.5;AN=6;AO=56;CIGAR=1X;DP=170;DPB=170;DPRA=0;EPP=124.613;EPPR=250.558;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=2234;QR=4492;RO=114;RPL=0;RPP=124.613;RPPR=250.558;RPR=56;RUN=1;SAF=56;SAP=124.613;SAR=0;SRF=114;SRP=250.558;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:69:60,9:60:2377:9:363:-12.2632,0,-193.311 0/1:47:22,25:22:848:25:982:-74.5244,0,-62.4714 0/1:54:32,22:32:1267:22:889:-64.0611,0,-98.0409 dDocent_Contig_2368 28 . A T 2701.86 . AB=0.0875912;ABP=205.401;AC=0;AF=0;AN=6;AO=12;CIGAR=2X3M;DP=152;DPB=152;DPRA=0;EPP=29.068;EPPR=89.8692;GTI=0;LEN=1;MEANALT=3.5;MQM=60;MQMR=60;NS=3;NUMALT=4;ODDS=0;PAIRED=0;PAIREDR=0.925;PAO=0;PQA=0;PQR=0;PRO=0;QA=473;QR=1582;RO=40;RPL=0;RPP=29.068;RPPR=89.8692;RPR=12;RUN=1;SAF=12;SAP=29.068;SAR=0;SRF=40;SRP=89.8692;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|0:103:23,7,0,9,64:23:913:7,0,9,64:286,0,354,2592:-206.81,-190.134,-263.186,-213.734,-265.293,-288.893,-184.618,-236.176,-259.776,-257.067,0,-51.5569,-75.1587,-46.0427,-55.8928 0|0:15:9,0,0,0,5:9:353:0,0,0,5:0,0,0,204:-14.1287,-16.838,-45.8599,-16.838,-45.8599,-45.8599,-16.838,-45.8599,-45.8599,-45.8599,0,-29.0235,-29.0235,-29.0235,-27.5184 0|0:34:8,2,4,3,17:8:316:2,4,3,17:81,160,119,693:-54.7701,-50.4992,-75.8983,-43.9995,-63.321,-68.7961,-47.3842,-66.7058,-60.2058,-72.482,0,-19.3212,-12.8209,-16.2064,-20.8838 dDocent_Contig_2369 13 . C A 33.8596 . AB=0.166667;ABP=20.3821;AC=2;AF=0.333333;AN=6;AO=3;CIGAR=1X;DP=30;DPB=30;DPRA=0.75;EPP=9.52472;EPPR=61.6401;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=118;QR=1079;RO=27;RPL=0;RPP=9.52472;RPPR=61.6401;RPR=3;RUN=1;SAF=3;SAP=9.52472;SAR=0;SRF=27;SRP=61.6401;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:12:12,0:12:486:0:0:0,-3.61236,-44.0916 0/1:7:5,2:5:198:2:77:-5.20099,0,-16.0886 0/1:11:10,1:10:395:1:41:-0.783237,0,-32.5935 dDocent_Contig_2370 29 . C T 1748.17 . AB=0.11249;ABP=3156.83;AC=3;AF=0.5;AN=6;AO=272;CIGAR=1X;DP=2418;DPB=2418;DPRA=0;EPP=159.484;EPPR=2020.35;GTI=0;LEN=1;MEANALT=1.66667;MQM=54.2059;MQMR=59.6612;NS=3;NUMALT=1;ODDS=0;PAIRED=0.845588;PAIREDR=0.920093;PAO=0;PQA=0;PQR=0;PRO=0;QA=10477;QR=83730;RO=2140;RPL=0;RPP=593.651;RPPR=4649.96;RPR=272;RUN=1;SAF=206;SAP=159.484;SAR=66;SRF=1775;SRP=2020.35;SRR=365;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:1122:1011,106:1011:39829:106:4137:-31.5553,0,-3240.13 0/1:422:365,57:365:14042:57:2156:-52.6239,0,-1134.23 0/1:874:764,109:764:29859:109:4184:-96.1602,0,-2419.15 dDocent_Contig_2371 33 . G A 10051.4 . AB=0.791798;ABP=237.454;AC=4;AF=0.666667;AN=6;AO=310;CIGAR=1M1X3M;DP=386;DPB=381.8;DPRA=0;EPP=676.167;EPPR=120.27;GTI=0;LEN=1;MEANALT=3;MQM=60;MQMR=60;NS=3;NUMALT=3;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=12387;QR=2130;RO=54;RPL=0;RPP=676.167;RPPR=120.27;RPR=310;RUN=1;SAF=310;SAP=676.167;SAR=0;SRF=54;SRP=120.27;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|1:214:32,11,2,169:32:1255:11,2,169:443,81,6765:-547.619,-520.739,-620.633,-550.573,-617.266,-653.176,0,-66.6841,-96.5194,-52.3249 1|1:69:4,0,5,59:4:159:0,5,59:0,197,2330:-195.173,-196.378,-209.469,-180.17,-193.261,-191.756,-4.66866,-17.7608,-1.55496,0 0|1:103:18,1,2,82:18:716:1,2,82:27,81,3292:-265.868,-269.159,-327.812,-264.607,-321.433,-322.959,0,-56.8634,-52.3056,-34.3016 dDocent_Contig_2372 16 . A C 1256.54 . 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G A 17114.6 . AB=0.864286;ABP=164.382;AC=5;AF=0.833333;AN=6;AO=512;CIGAR=1X;DP=553;DPB=553;DPRA=0;EPP=1114.8;EPPR=92.0407;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=0.966797;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=20371;QR=1611;RO=41;RPL=0;RPP=1114.8;RPPR=92.0407;RPR=512;RUN=1;SAF=512;SAP=1114.8;SAR=0;SRF=41;SRP=92.0407;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 1/1:234:19,215:19:734:215:8582:-705.529,-4.07251,0 0/1:140:19,121:19:759:121:4779:-387.893,0,-26.4893 1/1:179:3,176:3:118:176:7010:-619.564,-42.8817,0 dDocent_Contig_2374 20 . T C 95.9149 . AB=0.119565;ABP=118.665;AC=2;AF=0.333333;AN=6;AO=11;CIGAR=1X;DP=144;DPB=144;DPRA=0.884615;EPP=26.8965;EPPR=291.816;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=6.93889e-18;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=445;QR=5233;RO=133;RPL=0;RPP=26.8965;RPPR=291.816;RPR=11;RUN=1;SAF=11;SAP=26.8965;SAR=0;SRF=133;SRP=291.816;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:52:52,0:52:2057:0:0:0,-15.6536,-185.32 0/1:70:62,8:62:2415:8:324:-8.45672,0,-196.439 0/1:22:19,3:19:761:3:121:-4.65733,0,-62.1885 dDocent_Contig_2375 16 . C A 68.6875 . AB=0.142857;ABP=18.5208;AC=0;AF=0;AN=6;AO=2;CIGAR=1X2M1X11M1X8M;DP=53;DPB=53;DPRA=0;EPP=7.35324;EPPR=63.8115;GTI=0;LEN=1;MEANALT=4;MQM=60;MQMR=60;NS=3;NUMALT=4;ODDS=0;PAIRED=0;PAIREDR=0.714286;PAO=0;PQA=0;PQR=0;PRO=0;QA=75;QR=1100;RO=28;RPL=0;RPP=7.35324;RPPR=63.8115;RPR=2;RUN=1;SAF=2;SAP=7.35324;SAR=0;SRF=28;SRP=63.8115;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|0:28:12,0,3,2,10:12:470:0,3,2,10:0,120,77,396:-6.32439,-9.93675,-48.6773,0,-38.7764,-37.8734,-3.58447,-42.3459,-32.4425,-41.7438,-6.36681,-45.0471,-35.1571,-38.7235,-42.0368 0|0:14:8,2,0,2,1:8:312:2,0,2,1:75,0,77,40:-3.96743,-0.184069,-25.3341,-6.37567,-25.9361,-32.0849,0,-19.6041,-25.7554,-25.1533,-6.18044,-25.7224,-31.8677,-25.5415,-31.5667 0|0:11:8,0,1,0,1:8:318:0,1,0,1:0,41,0,37:-1.03904,-3.44728,-29.7123,0,-26.3239,-26.0228,-3.44728,-29.7123,-26.3239,-29.7123,-3.32008,-29.5042,-26.1187,-29.5042,-29.2031 dDocent_Contig_2376 142 . C T 54.8099 . AB=0.128205;ABP=49.8362;AC=1;AF=0.166667;AN=6;AO=6;CIGAR=1X;DP=89;DPB=89;DPRA=1.03448;EPP=16.0391;EPPR=183.243;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=245;QR=3255;RO=83;RPL=0;RPP=16.0391;RPPR=183.243;RPR=6;RUN=1;SAF=0;SAP=16.0391;SAR=6;SRF=0;SRP=183.243;SRR=83;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:39:34,5:34:1314:5:204:-7.00386,0,-106.768 0/0:21:20,1:20:783:1:41:0,-2.22706,-66.6877 0/0:29:29,0:29:1158:0:0:0,-8.72987,-104.499 dDocent_Contig_2377 9 . T C 117.643 . AB=0.122807;ABP=143.889;AC=2;AF=0.333333;AN=6;AO=25;CIGAR=1X;DP=245;DPB=245;DPRA=0;EPP=57.2971;EPPR=472.088;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=53.9136;NS=3;NUMALT=1;ODDS=0;PAIRED=0.04;PAIREDR=0.509091;PAO=0;PQA=0;PQR=0;PRO=0;QA=969;QR=8391;RO=220;RPL=0;RPP=57.2971;RPPR=480.734;RPR=25;RUN=1;SAF=25;SAP=57.2971;SAR=0;SRF=219;SRP=472.088;SRR=1;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:131:120,11:120:4590:11:426:0,-0.740222,-350.09 0/1:36:30,6:30:1134:6:234:-10.594,0,-87.065 0/1:78:70,8:70:2667:8:309:-4.69263,0,-216.578 dDocent_Contig_2378 7 . C A 2264.42 . AB=0.212654;ABP=411.083;AC=3;AF=0.5;AN=6;AO=121;CIGAR=1X;DP=569;DPB=569;DPRA=0;EPP=265.758;EPPR=975.83;GTI=0;LEN=1;MEANALT=1;MQM=49.6529;MQMR=46.3415;NS=3;NUMALT=1;ODDS=0;PAIRED=0.991736;PAIREDR=0.939732;PAO=0;PQA=0;PQR=0;PRO=0;QA=4570;QR=17180;RO=448;RPL=0;RPP=265.758;RPPR=975.83;RPR=121;RUN=1;SAF=121;SAP=265.758;SAR=0;SRF=448;SRP=975.83;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:248:199,49:199:7630:49:1846:-85.7289,0,-533.232 0/1:87:64,23:64:2449:23:877:-51.6906,0,-172.912 0/1:234:185,49:185:7101:49:1847:-94.5456,0,-460.59 dDocent_Contig_2379 171 . C A 6475.68 . AB=0.0681818;ABP=216.802;AC=0;AF=0;AN=6;AO=9;CIGAR=7M1X;DP=312;DPB=284.75;DPRA=0;EPP=22.5536;EPPR=185.414;GTI=0;LEN=1;MEANALT=2.5;MQM=60;MQMR=60;NS=3;NUMALT=2;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=307;QR=3115;RO=84;RPL=9;RPP=22.5536;RPPR=185.414;RPR=0;RUN=1;SAF=0;SAP=22.5536;SAR=9;SRF=0;SRP=185.414;SRR=84;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|0:180:53,122,0:53:1974:122,0:4730,0:-372.806,0,-125.034,-388.76,-161.759,-550.342 0|0:38:8,29,1:8:286:29,1:1128,38:-90.2891,0,-14.5646,-89.5811,-20.1754,-112.588 0|0:94:23,62,8:23:855:62,8:2397,269:-189.996,0,-51.353,-175.133,-48.2309,-242.693 dDocent_Contig_2380 49 . T G 84.3633 . AB=0.190476;ABP=20.4855;AC=2;AF=0.333334;AN=6;AO=6;CIGAR=2X1M;DP=87;DPB=87;DPRA=0;EPP=16.0391;EPPR=144.282;GTI=0;LEN=1;MEANALT=2.5;MQM=41.5;MQMR=60;NS=3;NUMALT=4;ODDS=0;PAIRED=0;PAIREDR=0.971014;PAO=0;PQA=0;PQR=0;PRO=0;QA=216;QR=2702;RO=69;RPL=6;RPP=16.0391;RPPR=152.842;RPR=0;RUN=1;SAF=6;SAP=16.0391;SAR=0;SRF=68;SRP=144.282;SRR=1;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|1:21:12,0,2,4,2:12:467:0,2,4,2:0,81,144,82:-7.67324,-11.2856,-49.6667,-4.59918,-42.9854,-42.3834,0,-38.3646,-31.684,-37.1605,-4.50877,-42.8959,-36.2141,-31.5943,-42.2939 0|1:33:26,4,0,0,3:26:1022:4,0,0,3:156,0,0,122:-4.28386,0,-82.8369,-12.1106,-84.041,-96.1692,-12.1106,-84.041,-96.1692,-96.1692,-2.03208,-73.9764,-86.1045,-86.1045,-85.2014 0|0:33:31,0,0,2,0:31:1213:0,0,2,0:0,0,72,0:0,-9.33193,-109.101,-9.33193,-109.101,-109.101,-3.42878,-103.543,-103.543,-102.941,-9.33193,-109.101,-109.101,-103.543,-109.101 dDocent_Contig_2381 73 . G A 71.239 . AB=0.120879;ABP=116.619;AC=2;AF=0.333333;AN=6;AO=11;CIGAR=1X;DP=120;DPB=120;DPRA=1.56897;EPP=26.8965;EPPR=239.701;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=397;QR=3751;RO=109;RPL=11;RPP=26.8965;RPPR=239.701;RPR=0;RUN=1;SAF=11;SAP=26.8965;SAR=0;SRF=109;SRP=239.701;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:69:60,9:60:2110:9:323:-8.64313,0,-169.395 0/1:22:20,2:20:687:2:74:-0.403216,0,-55.5269 0/0:29:29,0:29:954:0:0:0,-8.72987,-86.1595 dDocent_Contig_2382 11 . G A 7029.8 . AB=0.174026;ABP=2490.37;AC=3;AF=0.5;AN=6;AO=469;CIGAR=1X;DP=2695;DPB=2695;DPRA=0;EPP=995.54;EPPR=4765.05;GTI=0;LEN=1;MEANALT=3;MQM=47.9701;MQMR=59.694;NS=3;NUMALT=1;ODDS=0;PAIRED=0.987207;PAIREDR=0.994072;PAO=0;PQA=0;PQR=0;PRO=0;QA=18580;QR=86142;RO=2193;RPL=0;RPP=1021.43;RPPR=4765.05;RPR=469;RUN=1;SAF=466;SAP=995.54;SAR=3;SRF=2193;SRP=4765.05;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:1241:999,225:999:39377:225:8938:-352.613,0,-3161.26 0/1:617:501,111:501:19505:111:4382:-173.313,0,-1568.2 0/1:837:693,133:693:27260:133:5260:-182.577,0,-2199.94 dDocent_Contig_2387 164 . C A 36.9015 . AB=0.176471;ABP=18.4661;AC=1;AF=0.166667;AN=6;AO=3;CIGAR=1X;DP=103;DPB=103;DPRA=0.395349;EPP=9.52472;EPPR=220.158;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=114;QR=3892;RO=100;RPL=3;RPP=9.52472;RPPR=220.158;RPR=0;RUN=1;SAF=0;SAP=9.52472;SAR=3;SRF=0;SRP=220.158;SRR=100;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:71:71,0:71:2762:0:0:0,-21.3731,-248.724 0/1:17:14,3:14:549:3:114:-5.51397,0,-44.6369 0/0:15:15,0:15:581:0:0:0,-4.51545,-52.6227 dDocent_Contig_2388 107 . N A 223.164 . AB=0;ABP=0;AC=6;AF=1;AN=6;AO=7;CIGAR=1X;DP=7;DPB=7;DPRA=0;EPP=18.2106;EPPR=0;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=0;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=231;QR=0;RO=0;RPL=0;RPP=18.2106;RPPR=0;RPR=7;RUN=1;SAF=0;SAP=18.2106;SAR=7;SRF=0;SRP=0;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 1/1:1:0,1:0:0:1:25:-2.49986,-0.30103,0 1/1:4:0,4:0:0:4:140:-12.9449,-1.20412,0 1/1:2:0,2:0:0:2:66:-6.26831,-0.60206,0 dDocent_Contig_2389 18 . C A 256.473 . AB=0.170213;ABP=91.8097;AC=1;AF=0.166667;AN=6;AO=29;CIGAR=1X;DP=296;DPB=296;DPRA=0;EPP=65.983;EPPR=582.793;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=1138;QR=10574;RO=267;RPL=0;RPP=65.983;RPPR=582.793;RPR=29;RUN=1;SAF=29;SAP=65.983;SAR=0;SRF=267;SRP=582.793;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:123:115,8:115:4564:8:320:0,-7.85992,-381.509 0/0:79:74,5:74:2927:5:202:0,-5.21929,-244.972 0/1:94:78,16:78:3083:16:616:-27.4712,0,-249.266 dDocent_Contig_2390 30 . C T 1732.36 . AB=0.259516;ABP=148.183;AC=3;AF=0.5;AN=6;AO=75;CIGAR=1X;DP=289;DPB=289;DPRA=0;EPP=165.871;EPPR=467.705;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=2943;QR=8596;RO=214;RPL=0;RPP=165.871;RPPR=467.705;RPR=75;RUN=1;SAF=75;SAP=165.871;SAR=0;SRF=214;SRP=467.705;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:145:110,35:110:4406:35:1378:-80.628,0,-352.822 0/1:51:30,21:30:1216:21:844:-60.9192,0,-94.3578 0/1:93:74,19:74:2974:19:721:-37.2119,0,-239.753 dDocent_Contig_2391 16 . T C 76.4889 . AB=0.108108;ABP=52.3673;AC=1;AF=0.166667;AN=6;AO=4;CIGAR=1M1X1M;DP=48;DPB=54;DPRA=0;EPP=11.6962;EPPR=85.5263;GTI=0;LEN=1;MEANALT=2;MQM=60;MQMR=60;NS=3;NUMALT=2;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=158;QR=1515;RO=38;RPL=0;RPP=11.6962;RPPR=85.5263;RPR=4;RUN=1;SAF=4;SAP=11.6962;SAR=0;SRF=38;SRP=85.5263;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|1:23:20,1,2:20:795:1,2:40,81:-0.661858,-3.38902,-68.5338,0,-62.155,-64.8481 0|0:11:8,3,0:8:323:3,0:116,0:-7.50637,0,-26.1276,-9.91461,-27.0307,-36.5544 0|0:14:10,2,2:10:397:2,2:80,77:-3.58712,0,-32.0886,-0.283375,-26.3711,-32.3595 dDocent_Contig_2392 12 . C T 3494.08 . AB=0.465385;ABP=5.71629;AC=3;AF=0.5;AN=6;AO=121;CIGAR=1X;DP=260;DPB=260;DPRA=0;EPP=265.758;EPPR=302.673;GTI=0;LEN=1;MEANALT=1.33333;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=4804;QR=5436;RO=138;RPL=0;RPP=265.758;RPPR=302.673;RPR=121;RUN=1;SAF=121;SAP=265.758;SAR=0;SRF=138;SRP=302.673;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:152:75,77:75:2968:77:3064:-230.093,0,-221.469 0/1:41:19,21:19:756:21:841:-63.7919,0,-56.1478 0/1:67:44,23:44:1712:23:899:-61.0464,0,-134.14 dDocent_Contig_2393 11 . C T 244.212 . AB=0.123596;ABP=331.586;AC=2;AF=0.333333;AN=6;AO=48;CIGAR=1X;DP=477;DPB=477;DPRA=0;EPP=43.7254;EPPR=808.839;GTI=0;LEN=1;MEANALT=1;MQM=51.3958;MQMR=54.8345;NS=3;NUMALT=1;ODDS=2.77556e-17;PAIRED=0.75;PAIREDR=0.913753;PAO=0;PQA=0;PQR=0;PRO=0;QA=1880;QR=17094;RO=429;RPL=0;RPP=107.241;RPPR=934.572;RPR=48;RUN=1;SAF=39;SAP=43.7254;SAR=9;SRF=414;SRP=808.839;SRR=15;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:205:180,25:180:7197:25:982:-16.9883,0,-535.133 0/1:62:54,8:54:2141:8:325:-10.9558,0,-167.623 0/0:210:195,15:195:7756:15:573:0,-14.4025,-609.916 dDocent_Contig_2394 1 . N G 114.653 . AB=0;ABP=0;AC=2;AF=1;AN=2;AO=3;CIGAR=1X;DP=3;DPB=3;DPRA=0;EPP=9.52472;EPPR=0;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=0;NS=1;NUMALT=1;ODDS=6.68461;PAIRED=1;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=123;QR=0;RO=0;RPL=0;RPP=9.52472;RPPR=0;RPR=3;RUN=1;SAF=3;SAP=9.52472;SAR=0;SRF=0;SRP=0;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 1/1:3:0,3:0:0:3:123:-11.4648,-0.90309,0 ./.:.:.:.:.:.:.:. ./.:.:.:.:.:.:.:. dDocent_Contig_2395 63 . C T 146.699 . AB=0.352941;ABP=6.20364;AC=1;AF=0.166667;AN=6;AO=6;CIGAR=1X;DP=69;DPB=69;DPRA=0.653846;EPP=16.0391;EPPR=139.813;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=236;QR=2461;RO=63;RPL=6;RPP=16.0391;RPPR=139.813;RPR=0;RUN=1;SAF=6;SAP=16.0391;SAR=0;SRF=63;SRP=139.813;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:37:37,0:37:1449:0:0:0,-11.1381,-130.66 0/0:15:15,0:15:574:0:0:0,-4.51545,-51.981 0/1:17:11,6:11:438:6:236:-16.4939,0,-34.6559 dDocent_Contig_2397 43 . C T 4117.42 . AB=0.142857;ABP=88.3181;AC=3;AF=0.5;AN=6;AO=11;CIGAR=1X3M8I2M1X;DP=243;DPB=415.571;DPRA=0;EPP=26.8965;EPPR=200.614;GTI=0;LEN=1;MEANALT=3;MQM=60;MQMR=60;NS=3;NUMALT=2;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=425;QR=3572;RO=91;RPL=11;RPP=26.8965;RPPR=200.614;RPR=0;RUN=1;SAF=11;SAP=26.8965;SAR=0;SRF=91;SRP=200.614;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|1:110:46,63,0:46:1814:63,0:2460,0:-188.414,0,-130.324,-202.261,-149.289,-351.508 0|1:56:20,36,0:20:770:36,0:1404,0:-109.773,0,-52.7652,-115.794,-63.6023,-179.01 0|1:77:25,40,11:25:988:40,11:1542,425:-119.078,0,-69.2679,-91.6977,-46.4053,-169.693 dDocent_Contig_2398 11 . C T 2014.45 . AB=0.130435;ABP=57.5803;AC=0;AF=0;AN=6;AO=6;CIGAR=1X1M1X;DP=97;DPB=97;DPRA=0;EPP=16.0391;EPPR=57.2971;GTI=0;LEN=1;MEANALT=2;MQM=60;MQMR=60;NS=3;NUMALT=2;ODDS=6.93889e-18;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=242;QR=987;RO=25;RPL=0;RPP=16.0391;RPPR=57.2971;RPR=6;RUN=1;SAF=6;SAP=16.0391;SAR=0;SRF=25;SRP=57.2971;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|0:46:6,6,34:6:243:6,34:242,1362:-110.395,-92.2519,-110.484,0,-0.0904397,-9.80308 0|0:17:9,0,8:9:358:0,8:0,325:-24.5019,-27.2112,-56.683,0,-29.8736,-27.4654 0|0:34:10,0,24:10:386:0,24:0,910:-71.9677,-74.978,-106.676,0,-32.0818,-24.8571 dDocent_Contig_2399 53 . A G 1499.83 . AB=0.25498;ABP=133.896;AC=3;AF=0.5;AN=6;AO=64;CIGAR=1X;DP=251;DPB=251;DPRA=0;EPP=141.985;EPPR=409.076;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=2557;QR=7386;RO=187;RPL=64;RPP=141.985;RPPR=409.076;RPR=0;RUN=1;SAF=64;SAP=141.985;SAR=0;SRF=187;SRP=409.076;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:139:104,35:104:4090:35:1402:-84.5925,0,-326.247 0/1:38:27,11:27:1066:11:441:-28.6036,0,-84.7908 0/1:74:56,18:56:2230:18:714:-42.3097,0,-178.593 dDocent_Contig_2400 14 . G T 342.021 . AB=0.17757;ABP=99.6307;AC=1;AF=0.166667;AN=6;AO=26;CIGAR=1X;DP=196;DPB=196;DPRA=0;EPP=59.4686;EPPR=363.475;GTI=0;LEN=1;MEANALT=1.33333;MQM=60;MQMR=59.8072;NS=3;NUMALT=1;ODDS=0;PAIRED=0.961538;PAIREDR=0.620482;PAO=0;PQA=0;PQR=0;PRO=0;QA=1013;QR=6403;RO=166;RPL=0;RPP=59.4686;RPPR=363.475;RPR=26;RUN=1;SAF=26;SAP=59.4686;SAR=0;SRF=166;SRP=363.475;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:107:84,19:84:3242:19:742:-35.7245,0,-260.515 0/0:38:35,3:35:1348:3:116:0,-0.621435,-110.78 0/0:51:47,4:47:1813:4:155:0,-1.02906,-148.852 dDocent_Contig_2401 25 . T A 110.406 . AB=0.6;ABP=3.44459;AC=3;AF=0.75;AN=4;AO=4;CIGAR=1X;DP=6;DPB=6;DPRA=0;EPP=11.6962;EPPR=7.35324;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=2;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=150;QR=81;RO=2;RPL=0;RPP=11.6962;RPPR=7.35324;RPR=4;RUN=1;SAF=4;SAP=11.6962;SAR=0;SRF=2;SRP=7.35324;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 1/1:1:0,1:0:0:1:38:-3.79727,-0.30103,0 ./.:.:.:.:.:.:.:. 0/1:5:2,3:2:81:3:112:-8.94115,0,-6.18058 dDocent_Contig_2402 71 . C T 848.872 . AB=0.539683;ABP=3.872;AC=3;AF=0.5;AN=6;AO=34;CIGAR=1X;DP=63;DPB=63;DPRA=0;EPP=76.8404;EPPR=65.983;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=1204;QR=1045;RO=29;RPL=34;RPP=76.8404;RPPR=65.983;RPR=0;RUN=1;SAF=34;SAP=76.8404;SAR=0;SRF=29;SRP=65.983;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:34:19,15:19:693:15:524:-37.2476,0,-52.4653 0/1:10:4,6:4:148:6:222:-17.3278,0,-10.6717 0/1:19:6,13:6:204:13:458:-35.8347,0,-12.973 dDocent_Contig_2404 7 . C A 122.837 . AB=0.131868;ABP=110.128;AC=2;AF=0.333333;AN=6;AO=20;CIGAR=1X;DP=224;DPB=224;DPRA=0;EPP=46.4397;EPPR=443.819;GTI=0;LEN=1;MEANALT=1.33333;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=758;QR=7799;RO=203;RPL=0;RPP=46.4397;RPPR=443.819;RPR=20;RUN=1;SAF=20;SAP=46.4397;SAR=0;SRF=203;SRP=443.819;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:133:125,8:125:4793:8:305:0,-12.2271,-403.595 0/1:21:15,6:15:583:6:223:-14.106,0,-46.4916 0/1:70:63,6:63:2423:6:230:-0.0262694,0,-197.253 dDocent_Contig_2405 82 . G A 57.4921 . AB=0.178571;ABP=28.1373;AC=1;AF=0.166667;AN=6;AO=7;CIGAR=1X;DP=106;DPB=106;DPRA=1.62;EPP=18.2106;EPPR=217.986;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=3.46945e-18;PAIRED=1;PAIREDR=0.989899;PAO=0;PQA=0;PQR=0;PRO=0;QA=247;QR=3343;RO=99;RPL=7;RPP=18.2106;RPPR=217.986;RPR=0;RUN=1;SAF=7;SAP=18.2106;SAR=0;SRF=99;SRP=217.986;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:25:25,0:25:852:0:0:0,-7.52575,-76.9943 0/0:53:51,2:51:1752:2:73:0,-9.02329,-151.024 0/1:28:23,5:23:739:5:174:-7.57311,0,-58.3783 dDocent_Contig_2406 10 . T C 8008.28 . AB=0.705298;ABP=113.568;AC=3;AF=0.5;AN=6;AO=213;CIGAR=1M1D1M1X4M;DP=302;DPB=266.375;DPRA=0;EPP=465.534;EPPR=39.9253;GTI=0;LEN=1;MEANALT=2.66667;MQM=44.2864;MQMR=60;NS=3;NUMALT=2;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=8161;QR=663;RO=17;RPL=0;RPP=465.534;RPPR=39.9253;RPR=213;RUN=1;SAF=213;SAP=465.534;SAR=0;SRF=17;SRP=39.9253;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 1|0:113:8,74,29:8:314:74,29:2846,1099:-288.413,-64.2828,-67.8353,-200.714,0,-217.811 1|0:78:2,58,18:2:78:58,18:2214,691:-226.059,-50.3039,-39.2564,-169.936,0,-170.93 1|0:111:7,81,23:7:271:81,23:3101,843:-291.879,-46.6107,-44.4932,-225.096,0,-240.434 dDocent_Contig_2408 20 . A T 122.525 . AB=0.272727;ABP=12.8806;AC=1;AF=0.166667;AN=6;AO=6;CIGAR=1X1M1X3M2I3M1X;DP=46;DPB=47.2;DPRA=1.83333;EPP=16.0391;EPPR=89.8692;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=1.73472e-18;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=226;QR=1567;RO=40;RPL=0;RPP=16.0391;RPPR=89.8692;RPR=6;RUN=1;SAF=6;SAP=16.0391;SAR=0;SRF=40;SRP=89.8692;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|0:17:17,0:17:674:0:0:0,-5.11751,-60.9934 0|0:7:7,0:7:272:0:0:0,-2.10721,-24.8449 0|1:22:16,6:16:621:6:226:-14.0764,0,-49.6026 dDocent_Contig_2409 11 . G A 700.647 . AB=0.402985;ABP=8.4876;AC=3;AF=0.5;AN=6;AO=27;CIGAR=1X;DP=67;DPB=67;DPRA=0;EPP=61.6401;EPPR=89.8692;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=3.46945e-18;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=1049;QR=1577;RO=40;RPL=0;RPP=61.6401;RPPR=89.8692;RPR=27;RUN=1;SAF=27;SAP=61.6401;SAR=0;SRF=40;SRP=89.8692;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:26:14,12:14:555:12:486:-36.2645,0,-42.4632 0/1:35:25,10:25:986:10:362:-22.3693,0,-78.5087 0/1:6:1,5:1:36:5:201:-16.6643,0,-1.79209 dDocent_Contig_2410 11 . A T 503.226 . AB=0.03125;ABP=64.083;AC=3;AF=0.500001;AN=6;AO=6;CIGAR=1X4M1X;DP=81;DPB=81;DPRA=0;EPP=16.0391;EPPR=102.898;GTI=0;LEN=1;MEANALT=4;MQM=14.5;MQMR=50.913;NS=3;NUMALT=4;ODDS=0;PAIRED=0;PAIREDR=0.304348;PAO=0;PQA=0;PQR=0;PRO=0;QA=87;QR=1808;RO=46;RPL=0;RPP=16.0391;RPPR=102.898;RPR=6;RUN=1;SAF=6;SAP=16.0391;SAR=0;SRF=46;SRP=102.898;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|1:32:22,0,5,3,1:22:866:0,5,3,1:0,201,116,22:-8.8415,-15.4642,-85.4602,0,-70.0418,-68.5367,-5.91545,-75.9342,-60.5153,-75.0311,-14.0703,-84.0567,-68.6393,-74.5312,-83.7556 1|1:16:1,4,1,10,0:1:36:4,1,10,0:158,41,402,0:-45.0023,-32.3732,-32.0138,-42.2345,-30.1476,-42.7827,-12.2015,0,-9.9492,-10.0151,-45.3034,-33.2179,-43.0837,-13.0254,-46.1538 0|0:33:23,2,0,2,5:23:906:2,0,2,5:80,0,81,65:0,-0.305153,-62.7357,-6.92369,-63.3378,-69.9253,-0.206524,-56.6518,-63.2401,-62.6381,-4.00531,-60.3079,-66.8936,-60.2102,-65.3884 dDocent_Contig_2411 48 . G A 47.0077 . AB=0.233766;ABP=50.4161;AC=2;AF=0.333333;AN=6;AO=22;CIGAR=1X1M;DP=103;DPB=103;DPRA=0;EPP=28.2783;EPPR=163.699;GTI=0;LEN=1;MEANALT=1.66667;MQM=21.3182;MQMR=60;NS=3;NUMALT=2;ODDS=6.93889e-18;PAIRED=0;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=459;QR=2763;RO=74;RPL=19;RPP=28.2783;RPPR=163.699;RPR=3;RUN=1;SAF=22;SAP=50.7827;SAR=0;SRF=74;SRP=163.699;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|1:56:37,5,14:37:1390:5,14:158,276:-6.22151,-7.35745,-119.864,0,-104.003,-109.755 0|0:26:20,2,4:20:739:2,4:68,87:0,-1.8812,-61.8674,-0.364166,-56.7958,-59.6979 0|1:21:17,0,4:17:634:0,4:0,96:-0.0135627,-5.13107,-57.1895,0,-52.268,-51.0639 dDocent_Contig_2412 54 . A C 67.3477 . AB=0.178571;ABP=28.1373;AC=2;AF=0.333333;AN=6;AO=5;CIGAR=1X;DP=43;DPB=43;DPRA=0.933333;EPP=13.8677;EPPR=85.5263;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=199;QR=1519;RO=38;RPL=5;RPP=13.8677;RPPR=85.5263;RPR=0;RUN=1;SAF=5;SAP=13.8677;SAR=0;SRF=38;SRP=85.5263;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:13:11,2:11:440:2:77:-3.39481,0,-36.0409 0/0:15:15,0:15:607:0:0:0,-4.51545,-54.9683 0/1:15:12,3:12:472:3:122:-6.85704,0,-38.3127 dDocent_Contig_2413 8 . T C 114.046 . AB=0.26087;ABP=14.4341;AC=1;AF=0.166667;AN=6;AO=9;CIGAR=1X;DP=79;DPB=79;DPRA=0;EPP=22.5536;EPPR=155.013;GTI=0;LEN=1;MEANALT=1;MQM=58.8889;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=0;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=336;QR=2693;RO=70;RPL=0;RPP=22.5536;RPPR=155.013;RPR=9;RUN=1;SAF=9;SAP=22.5536;SAR=0;SRF=70;SRP=155.013;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:37:35,2:35:1342:2:77:0,-3.83594,-113.763 0/1:23:17,6:17:656:6:220:-13.2285,0,-52.4518 0/0:19:18,1:18:695:1:39:0,-1.82301,-58.9869 dDocent_Contig_2414 8 . A T 2861.95 . AB=0.722772;ABP=46.5472;AC=4;AF=0.666667;AN=6;AO=92;CIGAR=1X;DP=120;DPB=120;DPRA=0;EPP=202.786;EPPR=63.8115;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=3547;QR=1084;RO=28;RPL=0;RPP=202.786;RPPR=63.8115;RPR=92;RUN=1;SAF=92;SAP=202.786;SAR=0;SRF=28;SRP=63.8115;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:65:21,44:21:812:44:1704:-134.051,0,-53.8386 1/1:19:0,19:0:0:19:732:-66.2114,-5.71957,0 0/1:36:7,29:7:272:29:1111:-89.4557,0,-14.0101 dDocent_Contig_2415 7 . T C 22781.1 . AB=0.60709;ABP=70.4478;AC=6;AF=1;AN=6;AO=982;CIGAR=1X4M;DP=1487;DPB=1510;DPRA=0;EPP=2135.4;EPPR=163.699;GTI=0;LEN=1;MEANALT=18.3333;MQM=35.5204;MQMR=51.027;NS=3;NUMALT=3;ODDS=0;PAIRED=0.816701;PAIREDR=0.918919;PAO=11.5;PQA=439.5;PQR=439.5;PRO=11.5;QA=30089;QR=2838;RO=74;RPL=0;RPP=2135.4;RPPR=163.699;RPR=982;RUN=1;SAF=982;SAP=2135.4;SAR=0;SRF=74;SRP=163.699;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 1|1:677:33,68,63,411:33:1271:68,63,411:1822,2410,12901:-976.876,-862.86,-944.1,-878.138,-855.899,-960.883,-22.2283,0,-15.2801,-0.228014 1|1:285:16,4,19,209:16:606:4,19,209:156,732,6002:-445.161,-437.712,-484.013,-417.915,-453.154,-459.7,-15.3854,-50.6441,-30.8547,0 1|1:525:25,38,31,362:25:961:38,31,362:873,1202,11186:-855.821,-804.776,-870.573,-802.206,-820.873,-870.111,-31.7192,-50.41,-47.8311,0 dDocent_Contig_2416 107 . N A 260.989 . AB=0;ABP=0;AC=4;AF=1;AN=4;AO=8;CIGAR=1X;DP=8;DPB=8;DPRA=0;EPP=20.3821;EPPR=0;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=0;NS=2;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=279;QR=0;RO=0;RPL=0;RPP=20.3821;RPPR=0;RPR=8;RUN=1;SAF=0;SAP=20.3821;SAR=8;SRF=0;SRP=0;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 1/1:4:0,4:0:0:4:139:-12.8527,-1.20412,0 ./.:.:.:.:.:.:.:. 1/1:4:0,4:0:0:4:140:-12.9449,-1.20412,0 dDocent_Contig_2417 3 . A T 415.855 . AB=0;ABP=0;AC=6;AF=1;AN=6;AO=13;CIGAR=1X2I1M1X3M1X;DP=13;DPB=50.1429;DPRA=0;EPP=31.2394;EPPR=0;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=0;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=0;PAO=234;PQA=9011;PQR=0;PRO=0;QA=457;QR=0;RO=0;RPL=0;RPP=31.2394;RPPR=0;RPR=13;RUN=1;SAF=13;SAP=31.2394;SAR=0;SRF=0;SRP=0;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 1|1:1:0,1:0:0:1:36:-3.23813,-0.30103,0 1|1:6:0,6:0:0:6:209:-18.8001,-1.80618,0 1|1:6:0,6:0:0:6:212:-19.0693,-1.80618,0 dDocent_Contig_2418 23 . T C 9153.79 . AB=0.729798;ABP=184.646;AC=3;AF=0.5;AN=6;AO=289;CIGAR=1X;DP=396;DPB=396;DPRA=0;EPP=630.566;EPPR=235.358;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=11557;QR=4329;RO=107;RPL=0;RPP=630.566;RPPR=235.358;RPR=289;RUN=1;SAF=289;SAP=630.566;SAR=0;SRF=107;SRP=235.358;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:226:62,164:62:2513:164:6548:-520.998,0,-158.262 0/1:46:9,37:9:365:37:1489:-120.408,0,-19.3677 0/1:124:36,88:36:1451:88:3520:-279.497,0,-93.5103 dDocent_Contig_2419 10 . G C 6881.68 . AB=0.380952;ABP=83.148;AC=3;AF=0.5;AN=6;AO=248;CIGAR=1X;DP=651;DPB=651;DPRA=0;EPP=541.535;EPPR=865.107;GTI=0;LEN=1;MEANALT=1.33333;MQM=60;MQMR=59.7781;NS=3;NUMALT=1;ODDS=0;PAIRED=0.96371;PAIREDR=0.955112;PAO=0;PQA=0;PQR=0;PRO=0;QA=9881;QR=15883;RO=401;RPL=0;RPP=541.535;RPPR=873.771;RPR=248;RUN=1;SAF=248;SAP=541.535;SAR=0;SRF=400;SRP=865.107;SRR=1;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:367:230,137:230:9134:137:5446:-379.469,0,-711.033 0/1:117:63,52:63:2475:52:2088:-153.103,0,-183.665 0/1:167:108,59:108:4274:59:2347:-161.118,0,-334.355 dDocent_Contig_2420 7 . T C 7344.37 . AB=0.909091;ABP=34.9902;AC=5;AF=0.833333;AN=6;AO=228;CIGAR=1X;DP=244;DPB=244;DPRA=0;EPP=498.106;EPPR=35.5824;GTI=0;LEN=1;MEANALT=1.33333;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=8717;QR=556;RO=15;RPL=0;RPP=498.106;RPPR=35.5824;RPR=228;RUN=1;SAF=228;SAP=498.106;SAR=0;SRF=15;SRP=35.5824;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 1/1:147:7,139:7:258:139:5305:-453.901,-20.5651,0 0/1:22:2,20:2:74:20:772:-63.1859,0,-0.402774 1/1:75:6,69:6:224:69:2640:-217.272,-2.05801,0 dDocent_Contig_2422 98 . N G 66.4848 . AB=0;ABP=0;AC=2;AF=1;AN=2;AO=2;CIGAR=1X;DP=2;DPB=2;DPRA=0;EPP=7.35324;EPPR=0;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=0;NS=1;NUMALT=1;ODDS=5.99146;PAIRED=1;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=70;QR=0;RO=0;RPL=2;RPP=7.35324;RPPR=0;RPR=0;RUN=1;SAF=2;SAP=7.35324;SAR=0;SRF=0;SRP=0;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 1/1:2:0,2:0:0:2:70:-6.6474,-0.60206,0 ./.:.:.:.:.:.:.:. ./.:.:.:.:.:.:.:. dDocent_Contig_2423 12 . A C 5325.83 . AB=0.843434;ABP=205.857;AC=3;AF=0.5;AN=6;AO=167;CIGAR=1X;DP=198;DPB=198;DPRA=0;EPP=365.646;EPPR=70.3259;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=0.988024;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=6633;QR=1232;RO=31;RPL=0;RPP=365.646;RPPR=70.3259;RPR=167;RUN=1;SAF=167;SAP=365.646;SAR=0;SRF=31;SRP=70.3259;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:87:19,68:19:763:68:2720:-218.726,0,-42.8016 0/1:35:5,30:5:198:30:1163:-94.4145,0,-7.66095 0/1:76:7,69:7:271:69:2750:-224.742,0,-1.87317 dDocent_Contig_2424 30 . C T 97.1816 . AB=0.0816327;ABP=77.5051;AC=0;AF=0;AN=6;AO=8;CIGAR=1X2M1X;DP=249;DPB=249;DPRA=9.07692;EPP=20.3821;EPPR=500.277;GTI=0;LEN=1;MEANALT=2.5;MQM=60;MQMR=60;NS=3;NUMALT=2;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=312;QR=8855;RO=229;RPL=0;RPP=20.3821;RPPR=500.277;RPR=8;RUN=1;SAF=8;SAP=20.3821;SAR=0;SRF=229;SRP=500.277;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|0:187:178,4,4:178:6905:4,4:156,137:0,-40.7381,-606.876,-42.4823,-596.965,-608.584 0|0:13:13,0,0:13:506:0,0:0,0:0,-3.91339,-45.887,-3.91339,-45.887,-45.887 0|0:49:38,4,7:38:1444:4,7:156,279:-11.5421,-10.1616,-127.353,0,-105.578,-116.295 dDocent_Contig_2425 147 . C T 237.709 . AB=0.209877;ABP=62.2298;AC=3;AF=0.5;AN=6;AO=17;CIGAR=1X;DP=81;DPB=81;DPRA=0;EPP=39.9253;EPPR=139.813;GTI=0;LEN=1;MEANALT=1.33333;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=583;QR=2115;RO=63;RPL=0;RPP=39.9253;RPPR=139.813;RPR=17;RUN=1;SAF=0;SAP=39.9253;SAR=17;SRF=0;SRP=139.813;SRR=63;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:39:31,7:31:1045:7:238:-10.2094,0,-82.8381 0/1:17:13,4:13:420:4:137:-7.55055,0,-32.9943 0/1:25:19,6:19:650:6:208:-11.5338,0,-51.2956 dDocent_Contig_2426 17 . A C 686.689 . AB=0.25;ABP=74.6689;AC=3;AF=0.5;AN=6;AO=33;CIGAR=1X;DP=132;DPB=132;DPRA=0;EPP=74.6689;EPPR=217.986;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=1255;QR=3945;RO=99;RPL=0;RPP=74.6689;RPPR=217.986;RPR=33;RUN=1;SAF=33;SAP=74.6689;SAR=0;SRF=99;SRP=217.986;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:78:60,18:60:2409:18:733:-42.8134,0,-193.475 0/1:21:15,6:15:597:6:210:-12.908,0,-47.7427 0/1:33:24,9:24:939:9:312:-18.4704,0,-74.873 dDocent_Contig_2427 37 . C G 907.299 . AB=0.279412;ABP=60.4905;AC=3;AF=0.5;AN=6;AO=38;CIGAR=3X1M8D1M1X;DP=136;DPB=114.286;DPRA=0;EPP=85.5263;EPPR=198.443;GTI=0;LEN=1;MEANALT=2.33333;MQM=60;MQMR=60;NS=3;NUMALT=2;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=1490;QR=3569;RO=90;RPL=0;RPP=85.5263;RPPR=198.443;RPR=38;RUN=1;SAF=38;SAP=85.5263;SAR=0;SRF=90;SRP=198.443;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|1:51:40,11,0:40:1578:11,0:433,0:-23.9718,0,-126.919,-36.013,-130.23,-165.85 0|1:44:24,12,4:24:955:12,4:475,163:-31.9034,0,-75.0668,-25.6722,-65.2284,-103.123 0|1:41:26,15,0:26:1036:15,0:582,0:-40.3775,0,-81.1972,-48.2043,-85.7127,-133.526 dDocent_Contig_2428 23 . G A 27187.5 . AB=0.139981;ABP=1177.23;AC=3;AF=0.5;AN=6;AO=146;CIGAR=1X3M;DP=1043;DPB=1043;DPRA=0;EPP=320.045;EPPR=44.2683;GTI=0;LEN=1;MEANALT=6;MQM=60;MQMR=60;NS=3;NUMALT=3;ODDS=0;PAIRED=0.986301;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=5755;QR=731;RO=19;RPL=0;RPP=320.045;RPPR=44.2683;RPR=146;RUN=1;SAF=146;SAP=320.045;SAR=0;SRF=19;SRP=44.2683;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 1|0:562:7,234,79,231:7:259:234,79,231:9314,3139,9067:-1489.21,-724.432,-675.175,-1232.91,-487.211,-1230.31,-745.7,0,-508.48,-697.346 1|0:141:3,47,22,68:3:117:47,22,68:1856,865,2662:-361.064,-209.249,-204.718,-290.821,-147.72,-293.816,-143.101,0,-81.5728,-132.248 1|0:340:9,156,45,123:9:355:156,45,123:6155,1751,4856:-873.996,-370.324,-352.573,-732.838,-255.667,-748.501,-477.175,0,-362.518,-469.357 dDocent_Contig_2429 23 . A T 94.1975 . AB=0.333333;ABP=5.9056;AC=1;AF=0.166667;AN=6;AO=4;CIGAR=1X3M1X;DP=24;DPB=24;DPRA=2;EPP=3.0103;EPPR=44.2683;GTI=0;LEN=1;MEANALT=2;MQM=52;MQMR=60;NS=3;NUMALT=1;ODDS=1.73472e-18;PAIRED=0;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=161;QR=734;RO=19;RPL=4;RPP=11.6962;RPPR=44.2683;RPR=0;RUN=1;SAF=2;SAP=3.0103;SAR=2;SRF=19;SRP=44.2683;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|0:6:6,0:6:237:0:0:0,-1.80618,-21.7035 0|1:12:7,4:7:272:4:161:-11.2436,0,-21.3201 0|0:6:6,0:6:225:0:0:0,-1.80618,-20.6092 dDocent_Contig_2430 7 . C G 286.478 . AB=0.21;ABP=76.0586;AC=2;AF=0.333333;AN=6;AO=34;CIGAR=1X;DP=242;DPB=242;DPRA=0;EPP=76.8404;EPPR=454.677;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=0.870192;PAO=0;PQA=0;PQR=0;PRO=0;QA=1127;QR=8000;RO=208;RPL=0;RPP=76.8404;RPPR=454.677;RPR=34;RUN=1;SAF=34;SAP=76.8404;SAR=0;SRF=208;SRP=454.677;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:142:129,13:129:4996:13:442:0,-2.649,-409.548 0/1:52:45,7:45:1704:7:239:-6.18706,0,-137.97 0/1:48:34,14:34:1300:14:446:-25.9836,0,-102.839 dDocent_Contig_2432 167 . C G 205.06 . AB=0.215686;ABP=38.8183;AC=3;AF=0.5;AN=6;AO=11;CIGAR=1X1M1X16M;DP=51;DPB=51.2632;DPRA=0;EPP=26.8965;EPPR=76.8404;GTI=0;LEN=1;MEANALT=2.66667;MQM=60;MQMR=60;NS=3;NUMALT=2;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=438;QR=1329;RO=34;RPL=11;RPP=26.8965;RPPR=76.8404;RPR=0;RUN=1;SAF=0;SAP=26.8965;SAR=11;SRF=0;SRP=76.8404;SRR=34;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|1:13:9,2,2:9:351:2,2:81,80:-3.97236,0,-28.2417,-0.0939437,-22.2518,-28.3316 0|1:25:17,5,1:17:660:5,1:198,34:-11.2553,0,-52.8197,-13.6162,-51.5685,-67.5686 0|1:13:8,4,0:8:318:4,0:159,0:-10.6968,0,-24.9929,-13.105,-26.197,-39.2887 dDocent_Contig_2433 11 . A G 186.469 . AB=0.088364;ABP=1685.25;AC=1;AF=0.166667;AN=6;AO=177;CIGAR=1X;DP=2433;DPB=2433;DPRA=0;EPP=387.361;EPPR=4860.59;GTI=0;LEN=1;MEANALT=2.66667;MQM=60;MQMR=59.9531;NS=3;NUMALT=1;ODDS=0;PAIRED=0.898305;PAIREDR=0.839964;PAO=0;PQA=0;PQR=0;PRO=0;QA=7030;QR=89408;RO=2237;RPL=0;RPP=387.361;RPPR=4860.59;RPR=177;RUN=1;SAF=177;SAP=387.361;SAR=0;SRF=2237;SRP=4860.59;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:1143:1031,101:1031:41337:101:4015:-20.1698,0,-3375.2 0/0:556:511,42:511:20273:42:1664:0,-16.7824,-1671.28 0/0:734:695,34:695:27798:34:1351:0,-97.9999,-2377.43 dDocent_Contig_2434 49 . C T 69.5679 . AB=0.14;ABP=59.2949;AC=2;AF=0.333333;AN=6;AO=7;CIGAR=1X;DP=72;DPB=72;DPRA=1.13636;EPP=18.2106;EPPR=144.156;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=3.46945e-18;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=275;QR=2552;RO=65;RPL=0;RPP=18.2106;RPPR=144.156;RPR=7;RUN=1;SAF=7;SAP=18.2106;SAR=0;SRF=65;SRP=144.156;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:35:30,5:30:1196:5:199:-7.75231,0,-97.3837 0/1:15:13,2:13:510:2:76:-2.69936,0,-41.7317 0/0:22:22,0:22:846:0:0:0,-6.62266,-76.4409 dDocent_Contig_2435 22 . C A 3428.82 . AB=0.0521739;ABP=203.333;AC=0;AF=0;AN=6;AO=6;CIGAR=2X8M;DP=204;DPB=211.1;DPRA=0;EPP=16.0391;EPPR=122.441;GTI=0;LEN=1;MEANALT=4;MQM=60;MQMR=60;NS=3;NUMALT=4;ODDS=2.77556e-17;PAIRED=0;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=233;QR=2101;RO=55;RPL=0;RPP=16.0391;RPPR=122.441;RPR=6;RUN=1;SAF=6;SAP=16.0391;SAR=0;SRF=55;SRP=122.441;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|0:115:32,0,14,6,62:32:1225:0,14,6,62:0,536,233,2499:-196.269,-205.902,-306.421,-161.923,-262.44,-258.226,-186.759,-287.277,-243.296,-285.471,0,-100.523,-56.54,-81.378,-81.859 0|0:38:9,6,6,0,17:9:340:6,6,0,17:241,228,0,679:-53.2183,-36.0666,-62.122,-37.235,-45.2337,-63.2888,-55.9276,-63.9281,-65.095,-83.7895,0,-7.99461,-9.16604,-27.8606,-22.7431 0|0:51:14,0,3,0,31:14:536:0,3,0,31:0,116,0,1251:-98.9176,-103.132,-147.114,-93.6058,-137.587,-136.684,-103.132,-147.114,-137.587,-147.114,0,-43.9783,-34.4507,-43.9783,-34.6464 dDocent_Contig_2436 48 . T C 64.5019 . AB=0.190476;ABP=20.4855;AC=2;AF=0.333333;AN=6;AO=4;CIGAR=1X;DP=86;DPB=86;DPRA=0.161538;EPP=11.6962;EPPR=181.071;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=159;QR=3176;RO=82;RPL=0;RPP=11.6962;RPPR=181.071;RPR=4;RUN=1;SAF=4;SAP=11.6962;SAR=0;SRF=82;SRP=181.071;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:65:65,0:65:2516:0:0:0,-19.5669,-226.615 0/1:11:10,1:10:381:1:38:-0.485939,0,-31.3303 0/1:10:7,3:7:279:3:121:-8.26969,0,-22.4706 dDocent_Contig_2437 14 . T C 152.266 . AB=0.0955556;ABP=642.369;AC=3;AF=0.5;AN=6;AO=43;CIGAR=1X;DP=450;DPB=450;DPRA=0;EPP=96.3836;EPPR=878.114;GTI=0;LEN=1;MEANALT=1.66667;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=0.995037;PAO=0;PQA=0;PQR=0;PRO=0;QA=1720;QR=16002;RO=403;RPL=0;RPP=96.3836;RPPR=878.114;RPR=43;RUN=1;SAF=43;SAP=96.3836;SAR=0;SRF=403;SRP=878.114;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:184:163,18:163:6480:18:716:-9.87372,0,-528.044 0/1:98:89,9:89:3514:9:365:-3.71412,0,-286.803 0/1:168:151,16:151:6008:16:639:-7.15883,0,-489.826 dDocent_Contig_2438 67 . T C 2268.16 . AB=0.635659;ABP=23.6309;AC=3;AF=0.5;AN=6;AO=82;CIGAR=1X;DP=129;DPB=129;DPRA=0;EPP=181.071;EPPR=105.07;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=3003;QR=1645;RO=47;RPL=82;RPP=181.071;RPPR=105.07;RPR=0;RUN=1;SAF=82;SAP=181.071;SAR=0;SRF=47;SRP=105.07;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:64:23,41:23:831:41:1541:-119.696,0,-55.8355 0/1:26:6,20:6:219:20:706:-56.0185,0,-12.2331 0/1:39:18,21:18:595:21:756:-56.6243,0,-42.1188 dDocent_Contig_2439 59 . T A 33.5225 . AB=0.129032;ABP=40.0654;AC=1;AF=0.166667;AN=6;AO=5;CIGAR=1X;DP=70;DPB=70;DPRA=3.875;EPP=13.8677;EPPR=144.156;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=198;QR=2601;RO=65;RPL=5;RPP=13.8677;RPPR=144.156;RPR=0;RUN=1;SAF=5;SAP=13.8677;SAR=0;SRF=65;SRP=144.156;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:31:30,1:30:1207:1:41:0,-5.23736,-104.808 0/1:31:27,4:27:1070:4:157:-5.17596,0,-87.2611 0/0:8:8,0:8:324:0:0:0,-2.40824,-29.5292 dDocent_Contig_2440 47 . A C 1407 . AB=0.371429;ABP=23.1119;AC=3;AF=0.5;AN=6;AO=52;CIGAR=1X;DP=140;DPB=140;DPRA=0;EPP=115.927;EPPR=145.538;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=6.93889e-18;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=2082;QR=3519;RO=88;RPL=0;RPP=115.927;RPPR=145.538;RPR=52;RUN=1;SAF=52;SAP=115.927;SAR=0;SRF=88;SRP=194.1;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:87:53,34:53:2117:34:1357:-96.1984,0,-164.517 0/1:19:12,7:12:480:7:282:-20.0334,0,-37.8305 0/1:34:23,11:23:922:11:443:-29.9907,0,-73.0484 dDocent_Contig_2441 177 . T C 145.698 . AB=0.318182;ABP=9.32731;AC=1;AF=0.166667;AN=6;AO=7;CIGAR=1X;DP=49;DPB=49;DPRA=1.62963;EPP=18.2106;EPPR=94.2121;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=252;QR=1664;RO=42;RPL=7;RPP=18.2106;RPPR=94.2121;RPR=0;RUN=1;SAF=0;SAP=18.2106;SAR=7;SRF=0;SRP=94.2121;SRR=42;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:19:19,0:19:755:0:0:0,-5.71957,-68.2693 0/0:8:8,0:8:321:0:0:0,-2.40824,-29.2574 0/1:22:15,7:15:588:7:252:-16.3937,0,-46.6296 dDocent_Contig_2442 133 . A T 276.923 . AB=0.226667;ABP=51.6802;AC=2;AF=0.333333;AN=6;AO=18;CIGAR=1X1M1X;DP=89;DPB=89;DPRA=0;EPP=42.0968;EPPR=157.185;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=628;QR=2586;RO=71;RPL=0;RPP=42.0968;RPPR=157.185;RPR=18;RUN=1;SAF=0;SAP=42.0968;SAR=18;SRF=0;SRP=157.185;SRR=71;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|1:51:37,14:37:1318:14:479:-28.0751,0,-103.54 0|0:14:13,1:13:486:1:38:0,-0.417151,-40.2863 0|1:24:21,3:21:782:3:111:-3.1289,0,-63.4798 dDocent_Contig_2444 9 . T C 36.0873 . AB=0.121622;ABP=95.0338;AC=1;AF=0.166667;AN=6;AO=25;CIGAR=1X;DP=385;DPB=385;DPRA=0;EPP=57.2971;EPPR=784.74;GTI=0;LEN=1;MEANALT=1;MQM=44.44;MQMR=56.425;NS=3;NUMALT=1;ODDS=0;PAIRED=0.4;PAIREDR=0.894444;PAO=0;PQA=0;PQR=0;PRO=0;QA=954;QR=13824;RO=360;RPL=0;RPP=57.2971;RPPR=784.74;RPR=25;RUN=1;SAF=25;SAP=57.2971;SAR=0;SRF=360;SRP=784.74;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:187:177,10:177:6804:10:382:0,-25.8707,-565.594 0/1:74:65,9:65:2490:9:339:-5.43253,0,-185.846 0/0:124:118,6:118:4530:6:233:0,-17.2083,-376.631 dDocent_Contig_2445 63 . A G 401.741 . AB=0.101796;ABP=233.017;AC=1;AF=0.166667;AN=6;AO=18;CIGAR=4M1X3M;DP=500;DPB=541.25;DPRA=0;EPP=42.0968;EPPR=908.514;GTI=0;LEN=1;MEANALT=3;MQM=60;MQMR=60;NS=3;NUMALT=2;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=666;QR=15541;RO=417;RPL=18;RPP=42.0968;RPPR=908.514;RPR=0;RUN=1;SAF=18;SAP=42.0968;SAR=0;SRF=417;SRP=908.514;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|0:242:203,34,0:203:7638:34,0:1143,0:-31.5501,0,-615.669,-92.6592,-625.904,-718.494 0|0:91:84,6,1:84:3155:6,1:217,39:0,-7.59816,-264.226,-22.0766,-262.826,-280.237 0|1:167:130,15,17:130:4748:15,17:495,627:-12.1468,-11.2759,-394.69,0,-347.936,-382.837 dDocent_Contig_2446 36 . C A 59.4545 . AB=0.147059;ABP=39.7976;AC=2;AF=0.333333;AN=6;AO=6;CIGAR=1X;DP=50;DPB=50;DPRA=0;EPP=16.0391;EPPR=98.5551;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=0;PAIREDR=0.977273;PAO=0;PQA=0;PQR=0;PRO=0;QA=242;QR=1772;RO=44;RPL=0;RPP=16.0391;RPPR=98.5551;RPR=6;RUN=1;SAF=6;SAP=16.0391;SAR=0;SRF=44;SRP=98.5551;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:25:21,4:21:847:4:162:-7.441,0,-69.0145 0/1:9:8,1:8:326:1:40:-1.28641,0,-27.0006 0/0:16:15,1:15:599:1:40:0,-0.820801,-50.2533 dDocent_Contig_2448 3 . A T 47.491 . AB=0;ABP=0;AC=2;AF=1;AN=2;AO=2;CIGAR=2I1X1M1X3M1X1M1X1M1X;DP=2;DPB=20.8182;DPRA=0;EPP=7.35324;EPPR=0;GTI=0;LEN=1;MEANALT=1;MQM=27;MQMR=0;NS=1;NUMALT=1;ODDS=5.99146;PAIRED=0;PAIREDR=0;PAO=7;PQA=267;PQR=647;PRO=17;QA=71;QR=0;RO=0;RPL=0;RPP=7.35324;RPPR=0;RPR=2;RUN=1;SAF=2;SAP=7.35324;SAR=0;SRF=0;SRP=0;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL .:.:.:.:.:.:.:. .:.:.:.:.:.:.:. 1|1:2:0,2:0:0:2:71:-4.74801,-0.60206,0 dDocent_Contig_2449 98 . N C 115.595 . AB=0;ABP=0;AC=2;AF=1;AN=2;AO=4;CIGAR=1X;DP=4;DPB=4;DPRA=0;EPP=11.6962;EPPR=0;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=0;NS=1;NUMALT=1;ODDS=7.37776;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=125;QR=0;RO=0;RPL=4;RPP=11.6962;RPPR=0;RPR=0;RUN=1;SAF=4;SAP=11.6962;SAR=0;SRF=0;SRP=0;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL ./.:.:.:.:.:.:.:. 1/1:4:0,4:0:0:4:125:-11.5592,-1.20412,0 ./.:.:.:.:.:.:.:. dDocent_Contig_2452 20 . T C 219.041 . AB=0.146789;ABP=121.126;AC=2;AF=0.333333;AN=6;AO=17;CIGAR=1X;DP=211;DPB=211;DPRA=0;EPP=39.9253;EPPR=424.276;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=680;QR=7783;RO=194;RPL=0;RPP=39.9253;RPPR=424.276;RPR=17;RUN=1;SAF=17;SAP=39.9253;SAR=0;SRF=194;SRP=424.276;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:102:101,1:101:4035:1:41:0,-26.6105,-359.034 0/1:61:52,9:52:2094:9:353:-13.7616,0,-170.276 0/1:48:41,7:41:1654:7:286:-11.6654,0,-134.635 dDocent_Contig_2453 15 . G C 272.901 . AB=0.177778;ABP=84.1751;AC=2;AF=0.333333;AN=6;AO=17;CIGAR=1X;DP=122;DPB=122;DPRA=0;EPP=39.9253;EPPR=231.015;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=673;QR=4156;RO=105;RPL=0;RPP=39.9253;RPPR=231.015;RPR=17;RUN=1;SAF=17;SAP=39.9253;SAR=0;SRF=105;SRP=231.015;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:74:60,14:60:2376:14:553:-27.8343,0,-191.716 0/0:32:31,1:31:1219:1:38:0,-5.83569,-106.186 0/1:16:14,2:14:561:2:82:-2.9632,0,-46.0159 dDocent_Contig_2454 19 . C A 36.3171 . AB=0.148148;ABP=32.0437;AC=1;AF=0.166667;AN=6;AO=6;CIGAR=1X;DP=145;DPB=145;DPRA=1.11111;EPP=16.0391;EPPR=304.845;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=0.333333;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=227;QR=5599;RO=139;RPL=0;RPP=16.0391;RPPR=304.845;RPR=6;RUN=1;SAF=6;SAP=16.0391;SAR=0;SRF=139;SRP=304.845;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:73:71,2:71:2858:2:80:0,-14.3836,-249.723 0/1:27:23,4:23:925:4:147:-5.45552,0,-75.4258 0/0:45:45,0:45:1816:0:0:0,-13.5463,-163.647 dDocent_Contig_2455 32 . C A 150.057 . AB=0.333333;ABP=7.35324;AC=1;AF=0.166667;AN=6;AO=7;CIGAR=1X;DP=98;DPB=98;DPRA=0.330508;EPP=18.2106;EPPR=200.614;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=0;PAIREDR=0.835165;PAO=0;PQA=0;PQR=0;PRO=0;QA=283;QR=3643;RO=91;RPL=0;RPP=18.2106;RPPR=200.614;RPR=7;RUN=1;SAF=7;SAP=18.2106;SAR=0;SRF=91;SRP=200.614;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:59:59,0:59:2365:0:0:0,-17.7608,-212.996 0/1:18:12,6:12:487:6:243:-16.8296,0,-38.7631 0/0:21:20,1:20:791:1:40:0,-2.32595,-67.5142 dDocent_Contig_2456 30 . T G 822.771 . AB=0.378049;ABP=13.6028;AC=3;AF=0.5;AN=6;AO=31;CIGAR=1X;DP=82;DPB=82;DPRA=0;EPP=70.3259;EPPR=113.755;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=1238;QR=1995;RO=51;RPL=0;RPP=70.3259;RPPR=113.755;RPR=31;RUN=1;SAF=31;SAP=70.3259;SAR=0;SRF=51;SRP=113.755;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:22:10,12:10:389:12:487:-37.5588,0,-28.7379 0/1:24:16,8:16:637:8:324:-22.3045,0,-50.4393 0/1:36:25,11:25:969:11:427:-27.9367,0,-76.6694 dDocent_Contig_2457 17 . C T 1136.19 . AB=0.42268;ABP=8.04722;AC=3;AF=0.5;AN=6;AO=41;CIGAR=1X;DP=97;DPB=97;DPRA=0;EPP=92.0407;EPPR=122.441;GTI=0;LEN=1;MEANALT=1.33333;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=1638;QR=2155;RO=55;RPL=0;RPP=92.0407;RPPR=122.441;RPR=41;RUN=1;SAF=41;SAP=92.0407;SAR=0;SRF=55;SRP=122.441;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:61:38,22:38:1469:22:891:-62.0354,0,-113.995 0/1:24:13,11:13:522:11:432:-32.0051,0,-40.1025 0/1:12:4,8:4:164:8:315:-25.1012,0,-11.5375 dDocent_Contig_2459 15 . C T 395.086 . AB=0.173228;ABP=120.8;AC=2;AF=0.333333;AN=6;AO=22;CIGAR=1X;DP=153;DPB=153;DPRA=2.44231;EPP=50.7827;EPPR=287.473;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=895;QR=5203;RO=131;RPL=0;RPP=50.7827;RPPR=287.473;RPR=22;RUN=1;SAF=22;SAP=50.7827;SAR=0;SRF=131;SRP=287.473;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:97:80,17:80:3207:17:691:-33.3184,0,-259.488 0/0:26:26,0:26:1011:0:0:0,-7.82678,-91.2767 0/1:30:25,5:25:985:5:204:-9.71313,0,-79.9173 dDocent_Contig_2461 11 . G C 6633.91 . AB=0.650485;ABP=63.7904;AC=4;AF=0.666667;AN=6;AO=201;CIGAR=1X4M;DP=309;DPB=309;DPRA=0;EPP=439.476;EPPR=120.27;GTI=0;LEN=1;MEANALT=3;MQM=60;MQMR=60;NS=3;NUMALT=2;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=8045;QR=2104;RO=54;RPL=0;RPP=439.476;RPPR=120.27;RPR=201;RUN=1;SAF=201;SAP=439.476;SAR=0;SRF=54;SRP=120.27;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 1|1:198:31,38,126:31:1192:38,126:1465,5050:-429.167,-318.21,-404.611,-22.4501,0,-82.3638 0|1:61:8,5,48:8:318:5,48:199,1903:-154.226,-140.248,-164.925,0,-9.79554,-11.7325 0|1:50:15,7,27:15:594:7,27:278,1092:-85.5213,-67.1511,-113.928,0,-25.9978,-40.7573 dDocent_Contig_2462 30 . C T 646.22 . AB=0.0769231;ABP=265.758;AC=0;AF=0;AN=6;AO=13;CIGAR=1X1M1X3M1X;DP=169;DPB=169;DPRA=0;EPP=31.2394;EPPR=265.758;GTI=0;LEN=1;MEANALT=2.33333;MQM=60;MQMR=60;NS=3;NUMALT=2;ODDS=1.38778e-17;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=506;QR=4527;RO=121;RPL=0;RPP=31.2394;RPPR=265.758;RPR=13;RUN=1;SAF=13;SAP=31.2394;SAR=0;SRF=121;SRP=265.758;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|0:95:67,11,16:67:2525:11,16:428,608:-29.6911,-14.6809,-218.284,0,-171.733,-202.092 0|0:40:29,1,10:29:1066:1,10:39,380:-22.4236,-27.9467,-114.783,0,-83.9181,-84.1145 0|0:34:25,1,8:25:936:1,8:39,311:-18.0302,-22.3499,-98.6921,0,-73.4326,-74.2308 dDocent_Contig_2463 22 . A C 5629.88 . AB=0.494071;ABP=3.08755;AC=3;AF=0.5;AN=6;AO=125;CIGAR=1X1M1X;DP=253;DPB=253;DPRA=0;EPP=274.444;EPPR=44.2683;GTI=0;LEN=1;MEANALT=3;MQM=60;MQMR=60;NS=3;NUMALT=3;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=4923;QR=761;RO=19;RPL=0;RPP=274.444;RPPR=44.2683;RPR=125;RUN=1;SAF=125;SAP=274.444;SAR=0;SRF=19;SRP=44.2683;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 1|0:116:5,56,21,34:5:197:56,21,34:2176,823,1371:-274.073,-96.8042,-96.1532,-207.91,-45.3463,-217.796,-162.569,0,-111.108,-168.542 1|0:52:5,25,8,14:5:200:25,8,14:989,303,539:-107.661,-27.7692,-36.7215,-84.3365,-19.4188,-98.404,-64.9195,0,-56.5676,-77.181 1|0:85:9,44,9,23:9:364:44,9,23:1758,356,908:-186.777,-44.6929,-61.4608,-160.189,-45.4094,-187.492,-114.778,0,-115.494,-137.867 dDocent_Contig_2464 18 . G A 226.999 . AB=0.235294;ABP=34.0496;AC=2;AF=0.333333;AN=6;AO=16;CIGAR=1X;DP=123;DPB=123;DPRA=0;EPP=37.7539;EPPR=226.753;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=59.5607;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=0.990654;PAO=0;PQA=0;PQR=0;PRO=0;QA=617;QR=4182;RO=107;RPL=0;RPP=37.7539;RPPR=235.358;RPR=16;RUN=1;SAF=16;SAP=37.7539;SAR=0;SRF=106;SRP=226.753;SRR=1;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:72:68,4:68:2643:4:163:0,-6.61573,-222.943 0/1:27:20,7:20:786:7:259:-15.528,0,-60.4017 0/1:24:19,5:19:753:5:195:-10.6948,0,-60.8665 dDocent_Contig_2465 67 . C A 1025.66 . AB=0.536232;ABP=3.79707;AC=3;AF=0.5;AN=6;AO=37;CIGAR=1X;DP=69;DPB=69;DPRA=0;EPP=83.3548;EPPR=72.4974;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=1420;QR=1265;RO=32;RPL=37;RPP=83.3548;RPPR=72.4974;RPR=0;RUN=1;SAF=37;SAP=83.3548;SAR=0;SRF=32;SRP=72.4974;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:25:16,9:16:649:9:360:-25.2372,0,-51.2176 0/1:15:2,13:2:80:13:498:-40.6492,0,-3.07634 0/1:29:14,15:14:536:15:562:-42.1901,0,-39.8544 dDocent_Contig_2466 66 . G A 104.708 . AB=0.25;ABP=13.8677;AC=1;AF=0.166667;AN=6;AO=5;CIGAR=1X1M2X;DP=38;DPB=38;DPRA=2.22222;EPP=13.8677;EPPR=74.6689;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=1.73472e-18;PAIRED=0;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=196;QR=1257;RO=33;RPL=5;RPP=13.8677;RPPR=74.6689;RPR=0;RUN=1;SAF=5;SAP=13.8677;SAR=0;SRF=33;SRP=74.6689;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|1:20:15,5:15:572:5:196:-11.9937,0,-45.7964 0|0:6:6,0:6:228:0:0:0,-1.80618,-20.8842 0|0:12:12,0:12:457:0:0:0,-3.61236,-41.4741 dDocent_Contig_2467 15 . T G 1075.84 . AB=0.242424;ABP=117.111;AC=3;AF=0.5;AN=6;AO=48;CIGAR=1X;DP=198;DPB=198;DPRA=0;EPP=107.241;EPPR=326.56;GTI=0;LEN=1;MEANALT=1.33333;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=1909;QR=5980;RO=149;RPL=0;RPP=107.241;RPPR=326.56;RPR=48;RUN=1;SAF=48;SAP=107.241;SAR=0;SRF=149;SRP=326.56;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:130:94,35:94:3749:35:1394:-86.4708,0,-298.174 0/1:27:24,3:24:975:3:119:-2.96669,0,-79.919 0/1:41:31,10:31:1256:10:396:-23.6542,0,-100.964 dDocent_Contig_2468 53 . C T 3154.57 . AB=0.641975;ABP=31.3735;AC=3;AF=0.5;AN=6;AO=104;CIGAR=1X;DP=162;DPB=162;DPRA=0;EPP=228.843;EPPR=128.956;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=4100;QR=2315;RO=58;RPL=104;RPP=228.843;RPPR=128.956;RPR=0;RUN=1;SAF=104;SAP=228.843;SAR=0;SRF=58;SRP=128.956;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:73:31,42:31:1249:42:1702:-131.421,0,-90.7047 0/1:51:16,35:16:640:35:1376:-108.745,0,-42.5781 0/1:38:11,27:11:426:27:1022:-80.8143,0,-27.2456 dDocent_Contig_2469 17 . A C 262.141 . AB=0.112245;ABP=130.994;AC=1;AF=0.166667;AN=6;AO=11;CIGAR=1X3M1X2M;DP=142;DPB=142;DPRA=1.11364;EPP=26.8965;EPPR=224.5;GTI=0;LEN=1;MEANALT=4.5;MQM=60;MQMR=60;NS=3;NUMALT=4;ODDS=2.77556e-17;PAIRED=1;PAIREDR=0.970588;PAO=0;PQA=0;PQR=0;PRO=0;QA=435;QR=3952;RO=102;RPL=0;RPP=26.8965;RPPR=224.5;RPR=11;RUN=1;SAF=11;SAP=26.8965;SAR=0;SRF=102;SRP=224.5;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|1:62:39,10,0,5,4:39:1529:10,0,5,4:395,0,205,164:-20.7571,0,-122.708,-32.4973,-125.719,-158.222,-15.5751,-108.797,-141.301,-139.795,-18.9596,-112.181,-144.685,-127.763,-143.481 0|0:44:39,0,2,1,2:39:1504:0,2,1,2:0,77,41,82:0,-11.7402,-135.226,-5.42798,-128.904,-128.302,-8.35361,-131.842,-125.519,-131.54,-4.9654,-128.457,-122.135,-125.072,-127.855 0|0:36:24,1,3,3,5:24:919:1,3,3,5:40,121,119,197:-8.97986,-12.9093,-88.0143,-6.22841,-78.3396,-80.732,-6.40918,-78.5188,-71.8384,-80.9112,0,-72.1072,-65.4267,-65.606,-73.8976 dDocent_Contig_2470 121 . A G 337.733 . AB=0.377778;ABP=8.84915;AC=3;AF=0.5;AN=6;AO=17;CIGAR=1X;DP=45;DPB=45;DPRA=0;EPP=39.9253;EPPR=63.8115;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=0;PAIREDR=0.714286;PAO=0;PQA=0;PQR=0;PRO=0;QA=576;QR=876;RO=28;RPL=0;RPP=39.9253;RPPR=63.8115;RPR=17;RUN=1;SAF=0;SAP=39.9253;SAR=17;SRF=0;SRP=63.8115;SRR=28;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:13:6,7:6:166:7:228:-16.9253,0,-11.3 0/1:13:8,5:8:257:5:175:-12.1803,0,-19.532 0/1:19:14,5:14:453:5:173:-10.1906,0,-35.3628 dDocent_Contig_2471 10 . C T 39.9037 . AB=0.1875;ABP=16.582;AC=1;AF=0.166667;AN=6;AO=4;CIGAR=1X;DP=48;DPB=48;DPRA=1.68182;EPP=11.6962;EPPR=98.5551;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=0.5;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=152;QR=1777;RO=44;RPL=0;RPP=11.6962;RPPR=98.5551;RPR=4;RUN=1;SAF=4;SAP=11.6962;SAR=0;SRF=44;SRP=98.5551;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:21:20,1:20:808:1:38:0,-2.52436,-69.236 0/1:16:13,3:13:521:3:114:-5.81423,0,-42.4196 0/0:11:11,0:11:448:0:0:0,-3.31133,-40.676 dDocent_Contig_2472 7 . C A 94.0064 . AB=0.142857;ABP=65.0524;AC=1;AF=0.166667;AN=6;AO=9;CIGAR=1X;DP=165;DPB=165;DPRA=0.731343;EPP=22.5536;EPPR=341.76;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=347;QR=5950;RO=156;RPL=0;RPP=22.5536;RPPR=341.76;RPR=9;RUN=1;SAF=9;SAP=22.5536;SAR=0;SRF=156;SRP=341.76;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:67:67,0:67:2569:0:0:0,-20.169,-231.403 0/1:56:48,8:48:1814:8:308:-11.2245,0,-146.657 0/0:42:41,1:41:1567:1:39:0,-8.74669,-137.399 dDocent_Contig_2474 24 . T C 933.979 . AB=0.411765;ABP=8.75832;AC=3;AF=0.5;AN=6;AO=35;CIGAR=1X2M1X3M1X3M1X;DP=85;DPB=85;DPRA=0;EPP=79.0118;EPPR=94.2121;GTI=0;LEN=1;MEANALT=2;MQM=60;MQMR=60;NS=3;NUMALT=2;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=1354;QR=1643;RO=42;RPL=0;RPP=79.0118;RPPR=94.2121;RPR=35;RUN=1;SAF=35;SAP=79.0118;SAR=0;SRF=42;SRP=94.2121;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|1:47:21,21,4:21:817:21,4:815,162:-60.6239,0,-60.805,-53.5847,-53.766,-119.519 0|1:11:5,6,0:5:199:6,0:230,0:-17.7541,0,-14.9776,-19.2592,-16.7838,-35.6521 0|1:27:16,8,3:16:627:8,3:309,123:-20.5429,0,-49.1359,-15.2007,-41.3891,-65.8606 dDocent_Contig_2475 11 . T C 1825.15 . AB=0.0535211;ABP=617.684;AC=3;AF=0.5;AN=6;AO=19;CIGAR=1X1M;DP=355;DPB=355;DPRA=0;EPP=44.2683;EPPR=441.81;GTI=0;LEN=1;MEANALT=2;MQM=60;MQMR=59.651;NS=3;NUMALT=2;ODDS=2.77556e-17;PAIRED=0;PAIREDR=0.0862745;PAO=0;PQA=0;PQR=0;PRO=0;QA=742;QR=10151;RO=255;RPL=0;RPP=44.2683;RPPR=556.736;RPR=19;RUN=1;SAF=19;SAP=44.2683;SAR=0;SRF=241;SRP=441.81;SRR=14;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|1:203:141,55,7:141:5612:55,7:2187,271:-137.465,0,-445.515,-157.651,-439.812,-617.606 0|1:50:43,5,2:43:1695:5,2:196,81:-3.16383,0,-134.589,-9.42527,-129.414,-144.93 0|1:102:71,21,10:71:2844:21,10:838,390:-47.4,0,-227.946,-36.7249,-202.219,-267.975 dDocent_Contig_2476 89 . A T 107.167 . AB=0.1875;ABP=43.7254;AC=1;AF=0.166667;AN=6;AO=15;CIGAR=1X;DP=111;DPB=111;DPRA=0;EPP=35.5824;EPPR=211.472;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=478;QR=3076;RO=96;RPL=15;RPP=35.5824;RPPR=211.472;RPR=0;RUN=1;SAF=15;SAP=35.5824;SAR=0;SRF=96;SRP=211.472;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:48:39,9:39:1245:9:293:-12.2392,0,-97.8927 0/0:14:13,1:13:429:1:33:0,-0.915285,-35.6301 0/0:49:44,5:44:1402:5:152:0,-0.769864,-112.489 dDocent_Contig_2477 122 . C A 75.9518 . AB=0.155556;ABP=49.3833;AC=1;AF=0.166667;AN=6;AO=7;CIGAR=1X;DP=71;DPB=71;DPRA=3.46154;EPP=18.2106;EPPR=141.985;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=3.46945e-18;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=248;QR=2242;RO=64;RPL=0;RPP=18.2106;RPPR=141.985;RPR=7;RUN=1;SAF=0;SAP=18.2106;SAR=7;SRF=0;SRP=141.985;SRR=64;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:45:38,7:38:1337:7:248:-9.11806,0,-107.083 0/0:11:11,0:11:368:0:0:0,-3.31133,-33.4401 0/0:15:15,0:15:537:0:0:0,-4.51545,-48.6654 dDocent_Contig_2479 125 . T C 63.7667 . AB=0.307692;ABP=7.18621;AC=1;AF=0.166667;AN=6;AO=4;CIGAR=1X;DP=56;DPB=56;DPRA=0.604651;EPP=11.6962;EPPR=115.927;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=131;QR=1975;RO=52;RPL=0;RPP=11.6962;RPPR=115.927;RPR=4;RUN=1;SAF=0;SAP=11.6962;SAR=4;SRF=0;SRP=115.927;SRR=52;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:16:16,0:16:601:0:0:0,-4.81648,-54.4261 0/1:13:9,4:9:334:4:131:-8.20057,0,-26.4965 0/0:27:27,0:27:1040:0:0:0,-8.12781,-93.9085 dDocent_Contig_2480 107 . N G 67.4314 . AB=0;ABP=0;AC=2;AF=1;AN=2;AO=2;CIGAR=1X;DP=2;DPB=2;DPRA=0;EPP=7.35324;EPPR=0;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=0;NS=1;NUMALT=1;ODDS=5.99146;PAIRED=1;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=71;QR=0;RO=0;RPL=0;RPP=7.35324;RPPR=0;RPR=2;RUN=1;SAF=0;SAP=7.35324;SAR=2;SRF=0;SRP=0;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 1/1:2:0,2:0:0:2:71:-6.74206,-0.60206,0 ./.:.:.:.:.:.:.:. ./.:.:.:.:.:.:.:. dDocent_Contig_2481 26 . T C 103.758 . AB=0.130435;ABP=84.8654;AC=2;AF=0.333333;AN=6;AO=14;CIGAR=1X;DP=136;DPB=136;DPRA=0;EPP=33.4109;EPPR=267.93;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=6.93889e-18;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=567;QR=4888;RO=122;RPL=0;RPP=33.4109;RPPR=267.93;RPR=14;RUN=1;SAF=14;SAP=33.4109;SAR=0;SRF=122;SRP=267.93;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:67:62,5:62:2501:5:203:0,-1.51616,-206.569 0/1:34:28,6:28:1088:6:245:-12.1945,0,-87.9692 0/1:35:32,3:32:1299:3:119:-0.55845,0,-106.635 dDocent_Contig_2482 7 . C A 384.112 . AB=0.140351;ABP=259.168;AC=2;AF=0.333333;AN=6;AO=38;CIGAR=1X;DP=310;DPB=310;DPRA=0;EPP=85.5263;EPPR=593.651;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=57.0882;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=1438;QR=10430;RO=272;RPL=0;RPP=85.5263;RPPR=593.651;RPR=38;RUN=1;SAF=38;SAP=85.5263;SAR=0;SRF=272;SRP=593.651;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:182:154,28:154:5922:28:1049:-39.9287,0,-476.62 0/1:46:42,4:42:1593:4:156:-0.569909,0,-129.558 0/0:82:76,6:76:2915:6:233:0,-3.34438,-240.943 dDocent_Contig_2483 36 . T G 1902.84 . AB=0.666667;ABP=28.3441;AC=3;AF=0.5;AN=6;AO=70;CIGAR=1X;DP=105;DPB=105;DPRA=0;EPP=155.013;EPPR=79.0118;GTI=0;LEN=1;MEANALT=1;MQM=59.0286;MQMR=60;NS=3;NUMALT=1;ODDS=6.93889e-18;PAIRED=0.957143;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=2527;QR=1304;RO=35;RPL=0;RPP=155.013;RPPR=79.0118;RPR=70;RUN=1;SAF=70;SAP=155.013;SAR=0;SRF=35;SRP=79.0118;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:53:19,34:19:696:34:1227:-93.8121,0,-47.0082 0/1:13:5,8:5:194:8:289:-22.442,0,-13.9193 0/1:39:11,28:11:414:28:1011:-79.5523,0,-25.8692 dDocent_Contig_2484 29 . A T 460.22 . AB=0.0598802;ABP=283.988;AC=2;AF=0.333333;AN=6;AO=10;CIGAR=2M1X1M;DP=167;DPB=172;DPRA=0;EPP=24.725;EPPR=300.502;GTI=0;LEN=1;MEANALT=1.66667;MQM=60;MQMR=60;NS=3;NUMALT=2;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=403;QR=5284;RO=137;RPL=0;RPP=24.725;RPPR=300.502;RPR=10;RUN=1;SAF=10;SAP=24.725;SAR=0;SRF=137;SRP=300.502;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|0:134:114,19,1:114:4409:19,1:759,41:-28.1876,0,-356.373,-59.1204,-358.709,-420.924 0|1:17:15,0,2:15:583:0,2:0,82:-2.66217,-7.17762,-55.0666,0,-48.2959,-47.6939 0|1:16:8,1,7:8:292:1,7:39,280:-20.6647,-19.8683,-43.4034,0,-20.6239,-21.7253 dDocent_Contig_2485 13 . A T 136.905 . AB=0.157895;ABP=60.9543;AC=1;AF=0.166667;AN=6;AO=12;CIGAR=3X;DP=163;DPB=163;DPRA=4.93333;EPP=29.068;EPPR=330.903;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=0.993377;PAO=0;PQA=0;PQR=0;PRO=0;QA=472;QR=5884;RO=151;RPL=0;RPP=29.068;RPPR=330.903;RPR=12;RUN=1;SAF=12;SAP=29.068;SAR=0;SRF=151;SRP=330.903;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|0:91:88,3:88:3457:3:113:0,-16.8568,-300.674 0|0:15:15,0:15:591:0:0:0,-4.51545,-53.5308 0|1:57:48,9:48:1836:9:359:-15.5144,0,-148.321 dDocent_Contig_2486 26 . C T 5317.51 . AB=0.883721;ABP=58.0041;AC=5;AF=0.833333;AN=6;AO=162;CIGAR=1X;DP=177;DPB=177;DPRA=0;EPP=354.789;EPPR=35.5824;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=0.987654;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=6472;QR=604;RO=15;RPL=0;RPP=354.789;RPPR=35.5824;RPR=162;RUN=1;SAF=162;SAP=354.789;SAR=0;SRF=15;SRP=35.5824;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 1/1:101:8,93:8:318:93:3738:-307.431,-1.41976,0 1/1:33:2,31:2:82:31:1240:-104.091,-2.15431,0 0/1:43:5,38:5:204:38:1494:-121.752,0,-5.79974 dDocent_Contig_2488 57 . A C 67.8486 . AB=0.210526;ABP=16.8392;AC=1;AF=0.166667;AN=6;AO=5;CIGAR=1M2D4M1X12M;DP=50;DPB=49.6;DPRA=3.07143;EPP=13.8677;EPPR=94.2121;GTI=0;LEN=1;MEANALT=2.5;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=3.46945e-18;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=184;QR=1498;RO=42;RPL=5;RPP=13.8677;RPPR=94.2121;RPR=0;RUN=1;SAF=5;SAP=13.8677;SAR=0;SRF=42;SRP=94.2121;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|0:24:21,1:21:755:1:28:0,-4.09955,-65.4753 0|0:7:7,0:7:237:0:0:0,-2.10721,-21.6602 0|1:19:14,4:14:506:4:156:-8.60876,0,-40.0722 dDocent_Contig_2489 27 . C A 183.766 . AB=0.0892857;ABP=85.0609;AC=1;AF=0.166667;AN=6;AO=5;CIGAR=12M1X1M;DP=157;DPB=140.714;DPRA=0;EPP=13.8677;EPPR=291.816;GTI=0;LEN=1;MEANALT=2;MQM=60;MQMR=60;NS=3;NUMALT=2;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=204;QR=5220;RO=133;RPL=0;RPP=13.8677;RPPR=291.816;RPR=5;RUN=1;SAF=5;SAP=13.8677;SAR=0;SRF=133;SRP=291.816;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|0:101:88,13,0:88:3452:13,0:500,0:-14.9435,0,-280.366,-41.4341,-284.279,-325.328 0|1:17:12,2,3:12:467:2,3:75,123:-6.56071,-4.04366,-41.8016,0,-32.2472,-37.4854 0|0:39:33,4,2:33:1301:4,2:150,81:-2.33267,0,-105.822,-5.57757,-100.347,-112.029 dDocent_Contig_2490 18 . G T 159.875 . AB=0.388889;ABP=4.9405;AC=1;AF=0.166667;AN=6;AO=7;CIGAR=1X;DP=58;DPB=58;DPRA=0.9;EPP=18.2106;EPPR=113.755;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=251;QR=2004;RO=51;RPL=0;RPP=18.2106;RPPR=113.755;RPR=7;RUN=1;SAF=7;SAP=18.2106;SAR=0;SRF=51;SRP=113.755;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:18:11,7:11:437:7:251:-17.5104,0,-34.262 0/0:15:15,0:15:575:0:0:0,-4.51545,-52.0793 0/0:25:25,0:25:992:0:0:0,-7.52575,-89.578 dDocent_Contig_2491 128 . T A 192.216 . AB=0.100877;ABP=318.483;AC=0;AF=0;AN=6;AO=23;CIGAR=1X1M1X3M;DP=228;DPB=228;DPRA=0;EPP=52.9542;EPPR=161.528;GTI=0;LEN=1;MEANALT=5;MQM=5;MQMR=45.5342;NS=3;NUMALT=3;ODDS=1.38778e-17;PAIRED=0;PAIREDR=0.438356;PAO=0;PQA=0;PQR=0;PRO=0;QA=115;QR=2692;RO=73;RPL=0;RPP=52.9542;RPPR=161.528;RPR=23;RUN=1;SAF=0;SAP=52.9542;SAR=23;SRF=0;SRP=161.528;SRR=73;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|0:112:42,10,11,45:42:1586:10,11,45:50,427,447:-4.04154,-17.2399,-110.677,-9.40213,-106.417,-102.544,0,-97.0726,-89.2369,-82.9472 0|0:45:15,4,1,23:15:534:4,1,23:20,36,292:-9.44098,-14.1874,-50.7494,-13.7194,-51.7181,-51.1832,0,-38.0912,-37.5928,-30.8986 0|0:71:16,9,14,25:16:572:9,14,25:45,536,323:-11.2606,-16.5817,-56.6661,-12.7448,-56.0623,-51.3297,0,-43.3484,-39.5262,-35.2966 dDocent_Contig_2492 67 . T C 174.544 . AB=0.166667;ABP=84.0786;AC=3;AF=0.5;AN=6;AO=14;CIGAR=1X;DP=84;DPB=84;DPRA=0;EPP=33.4109;EPPR=155.013;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=524;QR=2745;RO=70;RPL=14;RPP=33.4109;RPPR=155.013;RPR=0;RUN=1;SAF=14;SAP=33.4109;SAR=0;SRF=70;SRP=155.013;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:46:38,8:38:1507:8:292:-12.7706,0,-122.035 0/1:14:12,2:12:464:2:78:-3.18905,0,-37.8929 0/1:24:20,4:20:774:4:154:-7.00833,0,-62.7632 dDocent_Contig_2493 25 . T C 104.479 . AB=0.170213;ABP=47.41;AC=1;AF=0.166667;AN=6;AO=16;CIGAR=1X;DP=361;DPB=361;DPRA=0;EPP=37.7539;EPPR=724.166;GTI=0;LEN=1;MEANALT=1.33333;MQM=40.5;MQMR=45.5262;NS=3;NUMALT=1;ODDS=6.93889e-18;PAIRED=1;PAIREDR=0.523256;PAO=0;PQA=0;PQR=0;PRO=0;QA=643;QR=12947;RO=344;RPL=0;RPP=37.7539;RPPR=749.997;RPR=16;RUN=1;SAF=16;SAP=37.7539;SAR=0;SRF=341;SRP=724.166;SRR=3;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:187:183,4:183:6908:4:158:0,-42.786,-562.368 0/1:47:39,8:39:1449:8:322:-12.2719,0,-104.491 0/0:127:122,4:122:4590:4:163:0,-24.1296,-359.638 dDocent_Contig_2495 14 . T A 7143.77 . AB=0.648199;ABP=71.8779;AC=3;AF=0.5;AN=6;AO=234;CIGAR=2X;DP=361;DPB=361;DPRA=0;EPP=511.135;EPPR=278.787;GTI=0;LEN=1;MEANALT=1;MQM=57.6496;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=0.992126;PAO=0;PQA=0;PQR=0;PRO=0;QA=9285;QR=5047;RO=127;RPL=0;RPP=511.135;RPPR=278.787;RPR=234;RUN=1;SAF=234;SAP=511.135;SAR=0;SRF=127;SRP=278.787;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|1:213:83,130:83:3309:130:5152:-396.054,0,-233.747 0|1:32:6,26:6:235:26:1037:-83.2987,0,-11.8869 0|1:116:38,78:38:1503:78:3096:-240.547,0,-100.597 dDocent_Contig_2496 19 . G A 1351.76 . AB=0.545455;ABP=4.58955;AC=3;AF=0.5;AN=6;AO=48;CIGAR=1X;DP=88;DPB=88;DPRA=0;EPP=107.241;EPPR=89.8692;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=1847;QR=1605;RO=40;RPL=0;RPP=107.241;RPPR=89.8692;RPR=48;RUN=1;SAF=48;SAP=107.241;SAR=0;SRF=40;SRP=89.8692;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:41:14,27:14:571:27:1068:-84.0657,0,-39.3897 0/1:29:19,10:19:757:10:354:-23.4544,0,-59.7223 0/1:18:7,11:7:277:11:425:-33.1789,0,-19.8786 dDocent_Contig_2497 53 . A T 311.394 . AB=0.223881;ABP=47.3796;AC=2;AF=0.333333;AN=6;AO=15;CIGAR=1X;DP=87;DPB=87;DPRA=1.675;EPP=35.5824;EPPR=159.356;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=601;QR=2845;RO=72;RPL=15;RPP=35.5824;RPPR=159.356;RPR=0;RUN=1;SAF=15;SAP=35.5824;SAR=0;SRF=72;SRP=159.356;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:53:41,12:41:1615:12:480:-27.5965,0,-129.637 0/0:20:20,0:20:806:0:0:0,-6.0206,-72.8585 0/1:14:11,3:11:424:3:121:-7.06578,0,-34.2901 dDocent_Contig_2498 25 . G T 268.161 . AB=0.642857;ABP=5.49198;AC=1;AF=0.166667;AN=6;AO=11;CIGAR=1X3M1X;DP=65;DPB=65;DPRA=2;EPP=26.8965;EPPR=120.27;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=442;QR=2110;RO=54;RPL=0;RPP=26.8965;RPPR=120.27;RPR=11;RUN=1;SAF=11;SAP=26.8965;SAR=0;SRF=54;SRP=120.27;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|0:38:36,2:36:1411:2:81:0,-3.75341,-119.565 0|0:13:13,0:13:501:0:0:0,-3.91339,-45.4336 0|1:14:5,9:5:198:9:361:-28.64,0,-13.9827 dDocent_Contig_2500 15 . G C 109.569 . AB=0.127907;ABP=106.433;AC=3;AF=0.5;AN=6;AO=11;CIGAR=1X;DP=86;DPB=86;DPRA=0;EPP=26.8965;EPPR=165.871;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=0.909091;PAIREDR=0.92;PAO=0;PQA=0;PQR=0;PRO=0;QA=444;QR=2947;RO=75;RPL=0;RPP=26.8965;RPPR=165.871;RPR=11;RUN=1;SAF=11;SAP=26.8965;SAR=0;SRF=75;SRP=165.871;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:35:32,3:32:1271:3:122:-0.836443,0,-104.118 0/1:18:16,2:16:618:2:81:-2.26719,0,-50.5322 0/1:33:27,6:27:1058:6:241:-12.1323,0,-85.5692 dDocent_Contig_2501 107 . N A 140.289 . AB=0;ABP=0;AC=6;AF=1;AN=6;AO=4;CIGAR=1X;DP=4;DPB=4;DPRA=0;EPP=11.6962;EPPR=0;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=0;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=139;QR=0;RO=0;RPL=0;RPP=11.6962;RPPR=0;RPR=4;RUN=1;SAF=0;SAP=11.6962;SAR=4;SRF=0;SRP=0;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 1/1:1:0,1:0:0:1:35:-3.49863,-0.30103,0 1/1:2:0,2:0:0:2:69:-6.55266,-0.60206,0 1/1:1:0,1:0:0:1:35:-3.49863,-0.30103,0 dDocent_Contig_2502 109 . T G 105.869 . AB=0.275;ABP=20.5992;AC=1;AF=0.166667;AN=6;AO=13;CIGAR=1X;DP=77;DPB=77;DPRA=3;EPP=31.2394;EPPR=141.985;GTI=0;LEN=1;MEANALT=1;MQM=32.6154;MQMR=51.3438;NS=3;NUMALT=1;ODDS=0;PAIRED=0;PAIREDR=0.546875;PAO=0;PQA=0;PQR=0;PRO=0;QA=452;QR=2210;RO=64;RPL=0;RPP=31.2394;RPPR=141.985;RPR=13;RUN=1;SAF=0;SAP=31.2394;SAR=13;SRF=0;SRP=141.985;SRR=64;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:40:29,11:29:1022:11:384:-12.1098,0,-75.8435 0/0:26:24,2:24:799:2:68:0,-4.79943,-64.3883 0/0:11:11,0:11:389:0:0:0,-3.31133,-28.6581 dDocent_Contig_2503 9 . G T 334.805 . AB=0.137615;ABP=251.674;AC=2;AF=0.333333;AN=6;AO=35;CIGAR=2M1X;DP=289;DPB=295.667;DPRA=0;EPP=79.0118;EPPR=522.028;GTI=0;LEN=1;MEANALT=2;MQM=59.8857;MQMR=60;NS=3;NUMALT=2;ODDS=0;PAIRED=0.914286;PAIREDR=0.99177;PAO=0;PQA=0;PQR=0;PRO=0;QA=1311;QR=9223;RO=243;RPL=0;RPP=79.0118;RPPR=530.678;RPR=35;RUN=1;SAF=35;SAP=79.0118;SAR=0;SRF=242;SRP=522.028;SRR=1;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|1:131:114,0,17:114:4343:0,17:0,627:-17.3191,-51.6365,-407.894,0,-356.628,-351.51 0|0:71:61,5,5:61:2275:5,5:187,194:0,-3.05681,-187.785,-2.41584,-173.349,-187.157 0|1:87:68,5,13:68:2605:5,13:199,490:-19.6843,-23.7606,-236.062,0,-197.414,-209.888 dDocent_Contig_2505 38 . G A 4735.2 . AB=0.754098;ABP=105.639;AC=4;AF=0.666667;AN=6;AO=148;CIGAR=1X;DP=193;DPB=193;DPRA=0;EPP=324.388;EPPR=100.727;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=1.38778e-17;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=5906;QR=1773;RO=45;RPL=0;RPP=324.388;RPPR=100.727;RPR=148;RUN=1;SAF=148;SAP=324.388;SAR=0;SRF=45;SRP=100.727;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:127:36,91:36:1412:91:3623:-287.868,0,-89.1012 1/1:10:0,10:0:0:10:397:-36.0879,-3.0103,0 0/1:56:9,47:9:361:47:1886:-153.087,0,-15.9958 dDocent_Contig_2506 8 . C T 676.83 . AB=0.178571;ABP=204.027;AC=3;AF=0.5;AN=6;AO=40;CIGAR=1X;DP=224;DPB=224;DPRA=0;EPP=89.8692;EPPR=400.39;GTI=0;LEN=1;MEANALT=1.33333;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=1552;QR=7007;RO=183;RPL=0;RPP=89.8692;RPPR=400.39;RPR=40;RUN=1;SAF=40;SAP=89.8692;SAR=0;SRF=183;SRP=400.39;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:71:55,16:55:2102:16:622:-34.9471,0,-168.033 0/1:65:58,7:58:2225:7:273:-5.37106,0,-180.904 0/1:88:70,17:70:2680:17:657:-32.8876,0,-214.809 dDocent_Contig_2507 159 . C T 321.844 . AB=0.363636;ABP=8.34028;AC=1;AF=0.166667;AN=6;AO=12;CIGAR=1X;DP=75;DPB=75;DPRA=1.57143;EPP=29.068;EPPR=139.813;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=481;QR=2522;RO=63;RPL=12;RPP=29.068;RPPR=139.813;RPR=0;RUN=1;SAF=0;SAP=29.068;SAR=12;SRF=0;SRP=139.813;SRR=63;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:33:21,12:21:835:12:481:-33.7072,0,-65.5226 0/0:17:17,0:17:679:0:0:0,-5.11751,-61.4404 0/0:25:25,0:25:1008:0:0:0,-7.52575,-91.0152 dDocent_Contig_2508 8 . C T 331.432 . AB=0.6;ABP=4.74748;AC=2;AF=0.333333;AN=6;AO=15;CIGAR=1X;DP=54;DPB=54;DPRA=0;EPP=35.5824;EPPR=87.6977;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=570;QR=1479;RO=39;RPL=0;RPP=35.5824;RPPR=87.6977;RPR=15;RUN=1;SAF=15;SAP=35.5824;SAR=0;SRF=39;SRP=87.6977;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:34:31,3:31:1190:3:104:0,-0.533491,-97.6944 0/1:13:2,11:2:72:11:427:-34.8716,0,-2.92325 0/1:7:6,1:6:217:1:39:-1.78935,0,-17.7693 dDocent_Contig_2509 12 . A G 1946.05 . AB=0.267742;ABP=148.261;AC=3;AF=0.5;AN=6;AO=83;CIGAR=1X;DP=310;DPB=310;DPRA=0;EPP=183.243;EPPR=495.935;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=1.38778e-17;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=3251;QR=9007;RO=227;RPL=0;RPP=183.243;RPPR=495.935;RPR=83;RUN=1;SAF=83;SAP=183.243;SAR=0;SRF=227;SRP=495.935;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:157:113,44:113:4508:44:1730:-108.665,0,-358.4 0/1:75:64,11:64:2527:11:438:-17.1979,0,-205.004 0/1:78:50,28:50:1972:28:1083:-74.2651,0,-154.198 dDocent_Contig_2510 76 . C T 47.7023 . AB=0.138889;ABP=43.7857;AC=2;AF=0.333333;AN=6;AO=6;CIGAR=1X;DP=61;DPB=61;DPRA=0;EPP=16.0391;EPPR=122.441;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=243;QR=2183;RO=55;RPL=6;RPP=16.0391;RPPR=122.441;RPR=0;RUN=1;SAF=6;SAP=16.0391;SAR=0;SRF=55;SRP=122.441;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:25:24,1:24:951:1:40:0,-3.53007,-81.8931 0/1:18:15,3:15:602:3:122:-5.95395,0,-49.1007 0/1:18:16,2:16:630:2:81:-2.26719,0,-51.6115 dDocent_Contig_2511 7 . C A 259.72 . AB=0.137143;ABP=203.146;AC=3;AF=0.5;AN=6;AO=24;CIGAR=1X;DP=175;DPB=175;DPRA=0;EPP=55.1256;EPPR=330.903;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=923;QR=5804;RO=151;RPL=0;RPP=55.1256;RPPR=330.903;RPR=24;RUN=1;SAF=24;SAP=55.1256;SAR=0;SRF=151;SRP=330.903;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:72:60,12:60:2319:12:458:-19.895,0,-187.246 0/1:49:44,5:44:1674:5:192:-2.89967,0,-136.171 0/1:54:47,7:47:1811:7:273:-8.68239,0,-146.985 dDocent_Contig_2512 7 . C A 556.714 . AB=0.201299;ABP=122.357;AC=3;AF=0.5;AN=6;AO=31;CIGAR=1X;DP=154;DPB=154;DPRA=0;EPP=70.3259;EPPR=267.93;GTI=0;LEN=1;MEANALT=1.33333;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=1184;QR=4670;RO=122;RPL=0;RPP=70.3259;RPPR=267.93;RPR=31;RUN=1;SAF=31;SAP=70.3259;SAR=0;SRF=122;SRP=267.93;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:67:47,20:47:1796:20:761:-48.6485,0,-141.725 0/1:22:18,4:18:678:4:152:-7.4271,0,-54.7291 0/1:65:57,7:57:2196:7:271:-5.11861,0,-178.227 dDocent_Contig_2513 26 . T C 205.827 . AB=0.193548;ABP=53.5846;AC=2;AF=0.333333;AN=6;AO=12;CIGAR=1X2M1X;DP=82;DPB=82;DPRA=1.55;EPP=29.068;EPPR=155.013;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=467;QR=2735;RO=70;RPL=0;RPP=29.068;RPPR=155.013;RPR=12;RUN=1;SAF=12;SAP=29.068;SAR=0;SRF=70;SRP=155.013;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|1:38:30,8:30:1167:8:310:-16.822,0,-93.8784 0|1:24:20,4:20:789:4:157:-7.28357,0,-64.1076 0|0:20:20,0:20:779:0:0:0,-6.0206,-70.4351 dDocent_Contig_2516 30 . C A 797.735 . AB=0.375;ABP=10.6105;AC=4;AF=0.666667;AN=6;AO=29;CIGAR=1X;DP=64;DPB=64;DPRA=0;EPP=65.983;EPPR=79.0118;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=1101;QR=1359;RO=35;RPL=0;RPP=65.983;RPPR=79.0118;RPR=29;RUN=1;SAF=29;SAP=65.983;SAR=0;SRF=35;SRP=79.0118;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:32:24,8:24:941:8:308:-18.4487,0,-75.3698 0/1:24:11,13:11:418:13:490:-37.2197,0,-30.7461 1/1:8:0,8:0:0:8:303:-27.628,-2.40824,0 dDocent_Contig_2517 107 . N C 667.938 . AB=0;ABP=0;AC=6;AF=1;AN=6;AO=34;CIGAR=1X;DP=37;DPB=37;DPRA=0;EPP=76.8404;EPPR=0;GTI=0;LEN=1;MEANALT=2;MQM=60;MQMR=0;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=734;QR=0;RO=0;RPL=0;RPP=76.8404;RPPR=0;RPR=34;RUN=1;SAF=0;SAP=76.8404;SAR=34;SRF=0;SRP=0;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 1/1:18:0,17:0:0:17:382:-34.5009,-5.11751,0 1/1:6:0,5:0:0:5:108:-9.77288,-1.50515,0 1/1:13:0,12:0:0:12:244:-22.0429,-3.61236,0 dDocent_Contig_2518 31 . T A 3708.79 . AB=0.634021;ABP=33.2766;AC=3;AF=0.5;AN=6;AO=123;CIGAR=1X;DP=194;DPB=194;DPRA=0;EPP=270.101;EPPR=157.185;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=4823;QR=2811;RO=71;RPL=0;RPP=270.101;RPPR=157.185;RPR=123;RUN=1;SAF=123;SAP=270.101;SAR=0;SRF=71;SRP=157.185;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:116:36,80:36:1420:80:3143:-248.051,0,-93.1456 0/1:22:9,13:9:357:13:504:-39.078,0,-25.8699 0/1:56:26,30:26:1034:30:1176:-89.2722,0,-76.5 dDocent_Contig_2519 18 . G C 4043.85 . AB=0.169863;ABP=348.548;AC=0;AF=0;AN=6;AO=62;CIGAR=4M1X1M;DP=365;DPB=372.333;DPRA=0;EPP=137.642;EPPR=302.673;GTI=0;LEN=1;MEANALT=3.66667;MQM=60;MQMR=60;NS=3;NUMALT=3;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=2473;QR=5398;RO=138;RPL=0;RPP=137.642;RPPR=302.673;RPR=62;RUN=1;SAF=62;SAP=137.642;SAR=0;SRF=138;SRP=302.673;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|0:240:88,13,83,54:88:3447:13,83,54:478,3269,2152:-242.416,-229.835,-509.362,0,-244.37,-258.457,-91.7039,-336.075,-106.239,-358.891 0|0:43:8,3,26,6:8:308:3,26,6:110,1033,239:-82.6368,-76.057,-100.439,0,-16.3002,-17.4598,-65.3645,-81.662,-5.60034,-88.8442 0|0:82:42,8,30,2:42:1643:8,30,2:319,1185,82:-84.8556,-71.2272,-203.901,0,-108.805,-126.046,-90.73,-199.541,-128.308,-225.211 dDocent_Contig_2520 26 . A G 1780.63 . AB=0.0675676;ABP=123.204;AC=0;AF=0;AN=6;AO=5;CIGAR=3M1X2M3D1X;DP=162;DPB=210.7;DPRA=0;EPP=13.8677;EPPR=92.0407;GTI=0;LEN=1;MEANALT=5;MQM=60;MQMR=60;NS=3;NUMALT=5;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=201;QR=1604;RO=41;RPL=0;RPP=13.8677;RPPR=92.0407;RPR=5;RUN=1;SAF=5;SAP=13.8677;SAR=0;SRF=41;SRP=92.0407;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|0:74:12,5,24,5,6,22:12:459:5,24,5,6,22:201,865,175,216,883:-102.051,-89.0977,-125.253,-35.1101,-56.202,-65.5428,-91.4324,-112.526,-58.5379,-127.587,-88.0464,-109.14,-55.152,-111.474,-123.9,-32.8944,-53.9901,0,-56.3257,-52.9394,-63.9348 0|0:37:12,0,12,0,6,7:12:483:0,12,0,6,7:0,460,0,229,278:-34.1372,-37.7496,-77.5626,0,-39.8139,-36.2016,-37.7496,-77.5626,-39.8139,-77.5626,-18.9692,-58.7826,-21.0365,-58.7826,-56.9764,-14.8591,-54.6749,-16.9271,-54.6749,-35.8952,-52.5677 0|0:51:17,0,17,4,5,8:17:662:0,17,4,5,8:0,641,162,193,325:-47.3975,-52.515,-106.918,0,-54.3971,-49.2796,-39.1545,-93.558,-41.0374,-92.3539,-36.6659,-91.0684,-38.549,-77.7086,-89.5633,-25.704,-80.1088,-27.5879,-66.7485,-64.2592,-77.7006 dDocent_Contig_2521 29 . G A 3444.39 . AB=0.708955;ABP=53.8292;AC=4;AF=0.666667;AN=6;AO=111;CIGAR=1X;DP=151;DPB=151;DPRA=0;EPP=244.044;EPPR=89.8692;GTI=0;LEN=1;MEANALT=1;MQM=59.3604;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=4348;QR=1511;RO=40;RPL=0;RPP=244.044;RPPR=89.8692;RPR=111;RUN=1;SAF=111;SAP=244.044;SAR=0;SRF=40;SRP=89.8692;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:79:25,54:25:935:54:2108:-166.111,0,-60.6775 1/1:17:1,16:1:36:16:637:-54.0674,-1.51924,0 0/1:55:14,41:14:540:41:1603:-127.783,0,-32.388 dDocent_Contig_2522 40 . C G 67.8727 . AB=0.133333;ABP=55.5599;AC=1;AF=0.166667;AN=6;AO=6;CIGAR=1X;DP=155;DPB=155;DPRA=0.818182;EPP=16.0391;EPPR=326.56;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=242;QR=5965;RO=149;RPL=0;RPP=16.0391;RPPR=326.56;RPR=6;RUN=1;SAF=6;SAP=16.0391;SAR=0;SRF=149;SRP=326.56;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:74:74,0:74:2972:0:0:0,-22.2762,-267.566 0/0:36:36,0:36:1411:0:0:0,-10.8371,-127.236 0/1:45:39,6:39:1582:6:242:-8.61118,0,-129.063 dDocent_Contig_2523 115 . A G 2714.38 . AB=0.8;ABP=73.366;AC=4;AF=0.666667;AN=6;AO=98;CIGAR=1X;DP=116;DPB=116;DPRA=0;EPP=215.815;EPPR=42.0968;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=0.897959;PAIREDR=0.944444;PAO=0;PQA=0;PQR=0;PRO=0;QA=3346;QR=627;RO=18;RPL=0;RPP=215.815;RPPR=42.0968;RPR=98;RUN=1;SAF=0;SAP=215.815;SAR=98;SRF=0;SRP=42.0968;SRR=18;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:39:9,30:9:312:30:1021:-80.4556,0,-16.676 1/1:26:0,26:0:0:26:895:-80.8651,-7.82678,0 0/1:51:9,42:9:315:42:1430:-113.641,0,-13.3362 dDocent_Contig_2525 90 . C T 83.6674 . AB=0.263158;ABP=12.2676;AC=1;AF=0.166667;AN=6;AO=7;CIGAR=1X;DP=65;DPB=65;DPRA=3.11111;EPP=18.2106;EPPR=128.956;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=238;QR=1951;RO=58;RPL=7;RPP=18.2106;RPPR=128.956;RPR=0;RUN=1;SAF=7;SAP=18.2106;SAR=0;SRF=58;SRP=128.956;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:37:35,2:35:1154:2:65:0,-4.96466,-97.9803 0/0:9:9,0:9:313:0:0:0,-2.70927,-28.507 0/1:19:14,5:14:484:5:173:-10.1906,0,-38.1701 dDocent_Contig_2526 26 . C T 71.322 . AB=0.122807;ABP=73.4498;AC=1;AF=0.166667;AN=6;AO=13;CIGAR=1X;DP=233;DPB=233;DPRA=0;EPP=31.2394;EPPR=480.734;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=499;QR=8728;RO=220;RPL=0;RPP=31.2394;RPPR=480.734;RPR=13;RUN=1;SAF=13;SAP=31.2394;SAR=0;SRF=220;SRP=480.734;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:113:109,4:109:4314:4:163:0,-18.958,-373.153 0/0:63:61,2:61:2419:2:50:0,-14.219,-213.126 0/1:57:50,7:50:1995:7:286:-8.95611,0,-162.586 dDocent_Contig_2527 117 . G A 49.3985 . AB=0.2;ABP=18.6449;AC=1;AF=0.166667;AN=6;AO=4;CIGAR=1X;DP=34;DPB=34;DPRA=2.85714;EPP=11.6962;EPPR=68.1545;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=0;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=135;QR=1022;RO=30;RPL=0;RPP=11.6962;RPPR=68.1545;RPR=4;RUN=1;SAF=0;SAP=11.6962;SAR=4;SRF=0;SRP=68.1545;SRR=30;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:20:16,4:16:556:4:135:-6.4627,0,-44.348 0/0:6:6,0:6:193:0:0:0,-1.80618,-17.6854 0/0:8:8,0:8:273:0:0:0,-2.40824,-24.9024 dDocent_Contig_2528 109 . T A 325.76 . AB=0.326923;ABP=16.5402;AC=3;AF=0.5;AN=6;AO=17;CIGAR=1X;DP=52;DPB=52;DPRA=0;EPP=39.9253;EPPR=79.0118;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=586;QR=1178;RO=35;RPL=0;RPP=39.9253;RPPR=79.0118;RPR=17;RUN=1;SAF=0;SAP=39.9253;SAR=17;SRF=0;SRP=79.0118;SRR=35;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:9:5,4:5:170:4:135:-9.77403,0,-12.9254 0/1:16:7,9:7:213:9:312:-23.5997,0,-14.6525 0/1:27:23,4:23:795:4:139:-4.72488,0,-63.7418 dDocent_Contig_2529 9 . G T 304.903 . AB=0.238095;ABP=40.5458;AC=2;AF=0.333333;AN=6;AO=17;CIGAR=1X;DP=84;DPB=84;DPRA=0;EPP=31.7504;EPPR=148.499;GTI=0;LEN=1;MEANALT=1;MQM=53.6471;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=0.882353;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=657;QR=2530;RO=67;RPL=0;RPP=39.9253;RPPR=148.499;RPR=17;RUN=1;SAF=16;SAP=31.7504;SAR=1;SRF=67;SRP=148.499;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:45:32,13:32:1216:13:501:-31.8919,0,-96.1859 0/0:21:19,2:19:725:2:78:0,-5.18194,-64.4381 0/1:18:16,2:16:589:2:78:-1.98493,0,-47.9195 dDocent_Contig_2530 14 . G C 12662.5 . AB=0.0842607;ABP=947.304;AC=0;AF=0;AN=6;AO=53;CIGAR=2X;DP=629;DPB=629;DPRA=0;EPP=118.098;EPPR=376.504;GTI=0;LEN=1;MEANALT=2;MQM=59.4528;MQMR=60;NS=3;NUMALT=2;ODDS=0;PAIRED=0.962264;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=2131;QR=6809;RO=172;RPL=0;RPP=118.098;RPPR=376.504;RPR=53;RUN=1;SAF=53;SAP=118.098;SAR=0;SRF=172;SRP=376.504;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|0:333:97,17,219:97:3830:17,219:679,8745:-691.012,-664.29,-974.304,0,-259.206,-249.204 0|0:97:23,5,69:23:921:5,69:205,2712:-216.113,-206.115,-280.487,0,-58.9448,-55.0958 0|0:199:52,31,116:52:2058:31,116:1247,4619:-364.647,-278.463,-438.499,0,-67.5281,-134.447 dDocent_Contig_2531 9 . A G 1255.25 . AB=0.54878;ABP=4.70511;AC=3;AF=0.5;AN=6;AO=45;CIGAR=1X;DP=82;DPB=82;DPRA=0;EPP=100.727;EPPR=83.3548;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=1719;QR=1417;RO=37;RPL=0;RPP=100.727;RPPR=83.3548;RPR=45;RUN=1;SAF=45;SAP=100.727;SAR=0;SRF=37;SRP=83.3548;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:42:21,21:21:807:21:802:-59.8608,0,-60.3126 0/1:23:11,12:11:417:12:455:-34.3743,0,-30.9567 0/1:17:5,12:5:193:12:462:-36.8131,0,-12.624 dDocent_Contig_2532 9 . A G 3735.87 . AB=0.0571429;ABP=658.857;AC=0;AF=0;AN=6;AO=22;CIGAR=3X2M;DP=385;DPB=385;DPRA=0;EPP=50.7827;EPPR=155.013;GTI=0;LEN=1;MEANALT=9.66667;MQM=59.5455;MQMR=56.2429;NS=3;NUMALT=6;ODDS=0;PAIRED=1;PAIREDR=0.828571;PAO=0;PQA=0;PQR=0;PRO=0;QA=835;QR=2437;RO=70;RPL=0;RPP=50.7827;RPPR=155.013;RPR=22;RUN=1;SAF=22;SAP=50.7827;SAR=0;SRF=70;SRP=155.013;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|0:152:29,13,36,33,5,23,5:29:992:13,36,33,5,23,5:496,1365,1257,192,768,193:-128.411,-96.4469,-170.142,-25.2172,-62.1285,-91.9871,-34.322,-71.2336,0,-101.995,-121.379,-158.293,-87.0617,-96.1668,-197.482,-74.9847,-111.896,-40.6655,-49.7704,-136.828,-145.666,-121.29,-158.204,-86.9724,-96.0775,-183.136,-136.739,-197.393 0|0:64:21,0,8,2,3,21,4:21:758:0,8,2,3,21,4:0,303,77,111,773,145:-56.889,-63.2106,-121.471,-38.3632,-96.6249,-94.2167,-56.8867,-115.147,-90.3011,-114.545,-54.1287,-112.389,-87.5428,-106.066,-111.486,0,-58.2643,-33.414,-51.9398,-49.1815,-51.9427,-51.3725,-109.633,-84.7863,-103.309,-100.551,-46.4249,-108.429 0|0:169:20,13,55,17,14,29,7:20:687:13,55,17,14,29,7:486,2107,638,532,1004,270:-193.81,-160.034,-210.792,-26.9011,-41.7735,-65.0155,-147.585,-162.459,-29.3245,-197.139,-156.208,-171.082,-37.9474,-158.633,-206.665,-118.26,-133.133,0,-120.685,-129.308,-164.2,-177.657,-192.531,-59.3974,-180.083,-188.705,-150.757,-230.221 dDocent_Contig_2533 119 . A G 1433.3 . AB=0.417647;ABP=13.0246;AC=3;AF=0.5;AN=6;AO=71;CIGAR=1X;DP=170;DPB=170;DPRA=0;EPP=157.185;EPPR=217.986;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=2213;QR=3089;RO=99;RPL=0;RPP=157.185;RPPR=217.986;RPR=71;RUN=1;SAF=0;SAP=157.185;SAR=71;SRF=0;SRP=217.986;SRR=99;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:106:67,39:67:2127:39:1271:-82.7752,0,-159.789 0/1:28:15,13:15:475:13:364:-24.6038,0,-34.6279 0/1:36:17,19:17:487:19:578:-41.4738,0,-33.2693 dDocent_Contig_2534 27 . T C 83.8503 . AB=0.307692;ABP=7.18621;AC=1;AF=0.166667;AN=6;AO=4;CIGAR=1X;DP=33;DPB=33;DPRA=1.3;EPP=11.6962;EPPR=65.983;GTI=0;LEN=1;MEANALT=1;MQM=42;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=0;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=162;QR=1139;RO=29;RPL=0;RPP=11.6962;RPPR=65.983;RPR=4;RUN=1;SAF=0;SAP=11.6962;SAR=4;SRF=29;SRP=65.983;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:8:8,0:8:321:0:0:0,-2.40824,-29.2581 0/1:13:9,4:9:359:4:162:-10.2089,0,-28.7594 0/0:12:12,0:12:459:0:0:0,-3.61236,-41.6483 dDocent_Contig_2535 11 . T G 62.4861 . AB=0.103448;ABP=161.453;AC=1;AF=0.166667;AN=6;AO=29;CIGAR=1X;DP=499;DPB=499;DPRA=0;EPP=65.983;EPPR=1021.43;GTI=0;LEN=1;MEANALT=1.33333;MQM=60;MQMR=58.5139;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=0.727079;PAO=0;PQA=0;PQR=0;PRO=0;QA=1162;QR=18743;RO=469;RPL=0;RPP=65.983;RPPR=1021.43;RPR=29;RUN=1;SAF=29;SAP=65.983;SAR=0;SRF=469;SRP=1021.43;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:261:248,13:248:9959:13:526:0,-30.8829,-837.897 0/0:122:118,4:118:4661:4:161:0,-21.8508,-386.932 0/1:116:103,12:103:4123:12:475:-8.07252,0,-328.818 dDocent_Contig_2536 42 . C G 3457.76 . AB=0.134692;ABP=2335.18;AC=3;AF=0.5;AN=6;AO=271;CIGAR=1X;DP=2012;DPB=2012;DPRA=0;EPP=574.236;EPPR=837.457;GTI=0;LEN=1;MEANALT=2;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=0.998849;PAO=0;PQA=0;PQR=0;PRO=0;QA=10624;QR=68560;RO=1737;RPL=2;RPP=574.236;RPPR=837.457;RPR=269;RUN=1;SAF=271;SAP=591.479;SAR=0;SRF=1737;SRP=3774.86;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:968:833,134:833:32802:134:5303:-185.832,0,-2658.02 0/1:438:367,68:367:14487:68:2616:-104.323,0,-1171.52 0/1:606:537,69:537:21271:69:2705:-61.1438,0,-1730.19 dDocent_Contig_2538 9 . G A 943.744 . AB=0.0561798;ABP=155.282;AC=0;AF=0;AN=6;AO=5;CIGAR=1M1D2M1X;DP=186;DPB=175.4;DPRA=0;EPP=13.8677;EPPR=247.86;GTI=0;LEN=1;MEANALT=3;MQM=60;MQMR=59.9242;NS=3;NUMALT=2;ODDS=0;PAIRED=1;PAIREDR=0.962121;PAO=0;PQA=0;PQR=15;PRO=0.5;QA=193;QR=5048;RO=132;RPL=0;RPP=13.8677;RPPR=289.645;RPR=5;RUN=1;SAF=5;SAP=13.8677;SAR=0;SRF=127;SRP=247.86;SRR=5;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|0:89:69,5,12:69:2628:5,12:193,454:-16.4411,-21.3595,-235.414,0,-199.705,-211.943 0|0:30:25,0,5:25:952:0,5:0,184:-7.8864,-15.4121,-93.5125,0,-78.4702,-76.9651 0|0:67:38,0,28:38:1468:0,28:0,1062:-75.5697,-87.0088,-207.584,0,-120.51,-112.081 dDocent_Contig_2539 9 . G T 49.8977 . AB=0.25;ABP=9.52472;AC=1;AF=0.166667;AN=6;AO=3;CIGAR=1X;DP=36;DPB=36;DPRA=1;EPP=9.52472;EPPR=74.6689;GTI=0;LEN=1;MEANALT=1;MQM=42;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=117;QR=1280;RO=33;RPL=0;RPP=9.52472;RPPR=74.6689;RPR=3;RUN=1;SAF=3;SAP=9.52472;SAR=0;SRF=33;SRP=74.6689;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:13:13,0:13:505:0:0:0,-3.91339,-45.7991 0/0:11:11,0:11:428:0:0:0,-3.31133,-38.8754 0/1:12:9,3:9:347:3:117:-6.81367,0,-27.9769 dDocent_Contig_2540 25 . C T 1245.22 . AB=0.245763;ABP=135.507;AC=3;AF=0.5;AN=6;AO=58;CIGAR=1X;DP=236;DPB=236;DPRA=0;EPP=128.956;EPPR=389.532;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=1.38778e-17;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=2224;QR=7030;RO=178;RPL=0;RPP=128.956;RPPR=389.532;RPR=58;RUN=1;SAF=58;SAP=128.956;SAR=0;SRF=178;SRP=389.532;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:101:78,23:78:3085:23:893:-50.268,0,-247.342 0/1:55:41,14:41:1626:14:491:-27.943,0,-130.023 0/1:80:59,21:59:2319:21:840:-51.8339,0,-184.802 dDocent_Contig_2542 85 . C T 161.73 . AB=0.257143;ABP=20.9405;AC=2;AF=0.333333;AN=6;AO=9;CIGAR=1X;DP=53;DPB=53;DPRA=0.972222;EPP=22.5536;EPPR=98.5551;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=0.954545;PAO=0;PQA=0;PQR=0;PRO=0;QA=312;QR=1475;RO=44;RPL=9;RPP=22.5536;RPPR=98.5551;RPR=0;RUN=1;SAF=9;SAP=22.5536;SAR=0;SRF=44;SRP=98.5551;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:21:19,2:19:643:2:69:-0.231033,0,-51.8671 0/1:14:7,7:7:225:7:243:-17.9945,0,-16.3499 0/0:18:18,0:18:607:0:0:0,-5.41854,-54.9483 dDocent_Contig_2543 35 . A C 322.065 . AB=0.174312;ABP=103.436;AC=1;AF=0.166667;AN=6;AO=20;CIGAR=1X1M8D1M1X4M;DP=206;DPB=194.125;DPRA=1.95238;EPP=46.4397;EPPR=372.161;GTI=0;LEN=1;MEANALT=2.5;MQM=44.35;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=0.05;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=766;QR=6541;RO=170;RPL=0;RPP=46.4397;RPPR=372.161;RPR=20;RUN=1;SAF=20;SAP=46.4397;SAR=0;SRF=170;SRP=372.161;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|1:109:79,19:79:3045:19:726:-33.7294,0,-244.278 0|0:42:37,0:37:1418:0:0:0,-11.1381,-127.588 0|0:55:54,1:54:2078:1:40:0,-12.7331,-183.403 dDocent_Contig_2544 13 . G T 66.8725 . AB=0.139535;ABP=51.5402;AC=1;AF=0.166667;AN=6;AO=6;CIGAR=1X;DP=82;DPB=82;DPRA=2.20513;EPP=16.0391;EPPR=168.042;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=231;QR=3046;RO=76;RPL=0;RPP=16.0391;RPPR=168.042;RPR=6;RUN=1;SAF=6;SAP=16.0391;SAR=0;SRF=76;SRP=168.042;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:43:37,6:37:1486:6:231:-8.21013,0,-121.041 0/0:13:13,0:13:517:0:0:0,-3.91339,-46.8764 0/0:26:26,0:26:1043:0:0:0,-7.82678,-94.1614 dDocent_Contig_2545 107 . N G 55.097 . AB=0;ABP=0;AC=2;AF=1;AN=2;AO=2;CIGAR=1X;DP=2;DPB=2;DPRA=0;EPP=7.35324;EPPR=0;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=0;NS=1;NUMALT=1;ODDS=5.99146;PAIRED=1;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=58;QR=0;RO=0;RPL=0;RPP=7.35324;RPPR=0;RPR=2;RUN=1;SAF=0;SAP=7.35324;SAR=2;SRF=0;SRP=0;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL ./.:.:.:.:.:.:.:. 1/1:2:0,2:0:0:2:58:-5.50862,-0.60206,0 ./.:.:.:.:.:.:.:. dDocent_Contig_2546 31 . A C 2930.43 . AB=0.623377;ABP=23.3714;AC=3;AF=0.5;AN=6;AO=96;CIGAR=1X2M;DP=154;DPB=154;DPRA=0;EPP=211.472;EPPR=115.927;GTI=0;LEN=1;MEANALT=2.33333;MQM=60;MQMR=60;NS=3;NUMALT=2;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=3817;QR=2040;RO=52;RPL=0;RPP=211.472;RPPR=115.927;RPR=96;RUN=1;SAF=96;SAP=211.472;SAR=0;SRF=52;SRP=115.927;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|1:63:20,1,41:20:780:1,41:41,1630:-128.159,-130.795,-194.603,0,-60.7122,-51.755 0|1:29:7,2,20:7:266:2,20:82,802:-63.9587,-59.297,-80.4996,0,-15.0121,-15.7663 0|1:62:25,2,35:25:994:2,35:80,1385:-106.448,-107.384,-188.621,0,-75.2459,-71.3 dDocent_Contig_2547 9 . G A 731.244 . AB=0.103346;ABP=1841.08;AC=3;AF=0.5;AN=6;AO=139;CIGAR=1X;DP=1345;DPB=1345;DPRA=0;EPP=304.845;EPPR=2550.15;GTI=0;LEN=1;MEANALT=2;MQM=57.8993;MQMR=58.1415;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=5314;QR=44998;RO=1173;RPL=0;RPP=304.845;RPPR=2550.15;RPR=139;RUN=1;SAF=139;SAP=304.845;SAR=0;SRF=1173;SRP=2550.15;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:657:564,74:564:21643:74:2824:-58.5475,0,-1746.65 0/1:110:96,13:96:3684:13:504:-11.9666,0,-297.093 0/1:578:513,52:513:19671:52:1986:-8.13317,0,-1593.67 dDocent_Contig_2548 17 . C A 1237.87 . AB=0.191358;ABP=271.093;AC=3;AF=0.5;AN=6;AO=62;CIGAR=1X;DP=324;DPB=324;DPRA=0;EPP=137.642;EPPR=558.907;GTI=0;LEN=1;MEANALT=1.66667;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=2499;QR=10325;RO=256;RPL=0;RPP=137.642;RPPR=558.907;RPR=62;RUN=1;SAF=62;SAP=137.642;SAR=0;SRF=256;SRP=558.907;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:149:115,29:115:4641:29:1159:-60.8356,0,-373.827 0/1:56:44,11:44:1763:11:447:-23.6201,0,-141.915 0/1:119:97,22:97:3921:22:893:-44.8541,0,-317.038 dDocent_Contig_2552 106 . N C 435.196 . AB=0;ABP=0;AC=6;AF=1;AN=6;AO=14;CIGAR=2X;DP=15;DPB=15;DPRA=0;EPP=33.4109;EPPR=0;GTI=0;LEN=1;MEANALT=1.33333;MQM=58.0714;MQMR=0;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=471;QR=0;RO=0;RPL=0;RPP=33.4109;RPPR=0;RPR=14;RUN=1;SAF=0;SAP=33.4109;SAR=14;SRF=0;SRP=0;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 1|1:3:0,3:0:0:3:103:-9.59931,-0.90309,0 1|1:4:0,3:0:0:3:99:-8.90721,-0.90309,0 1|1:8:0,8:0:0:8:269:-24.5356,-2.40824,0 dDocent_Contig_2556 62 . T G 32.083 . AB=0.272727;ABP=7.94546;AC=2;AF=0.333333;AN=6;AO=3;CIGAR=2X;DP=21;DPB=21;DPRA=0.55;EPP=9.52472;EPPR=42.0968;GTI=0;LEN=1;MEANALT=1;MQM=44;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=0;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=112;QR=704;RO=18;RPL=3;RPP=9.52472;RPPR=42.0968;RPR=0;RUN=1;SAF=3;SAP=9.52472;SAR=0;SRF=18;SRP=42.0968;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|1:9:7,2:7:276:2:76:-3.70657,0,-22.4988 0|1:2:1,1:1:37:1:36:-2.99621,0,-3.09577 0|0:10:10,0:10:391:0:0:0,-3.0103,-35.546 dDocent_Contig_2557 17 . C G 147.701 . AB=0.141026;ABP=90.3146;AC=1;AF=0.166667;AN=6;AO=11;CIGAR=1X;DP=142;DPB=142;DPRA=2.4375;EPP=26.8965;EPPR=287.473;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=0.938931;PAO=0;PQA=0;PQR=0;PRO=0;QA=438;QR=5238;RO=131;RPL=0;RPP=26.8965;RPPR=287.473;RPR=11;RUN=1;SAF=11;SAP=26.8965;SAR=0;SRF=131;SRP=287.473;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:78:67,11:67:2668:11:438:-16.293,0,-216.758 0/0:18:18,0:18:720:0:0:0,-5.41854,-65.126 0/0:46:46,0:46:1850:0:0:0,-13.8474,-166.705 dDocent_Contig_2558 7 . C T 2258.29 . AB=0.339623;ABP=62.2137;AC=3;AF=0.5;AN=6;AO=90;CIGAR=1X;DP=265;DPB=265;DPRA=0;EPP=198.443;EPPR=383.018;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=0;PAIREDR=0.154286;PAO=0;PQA=0;PQR=0;PRO=0;QA=3447;QR=6758;RO=175;RPL=0;RPP=198.443;RPPR=383.018;RPR=90;RUN=1;SAF=90;SAP=198.443;SAR=0;SRF=175;SRP=383.018;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:95:58,37:58:2248:37:1426:-100.018,0,-173.938 0/1:77:55,22:55:2112:22:832:-52.0226,0,-167.132 0/1:93:62,31:62:2398:31:1189:-79.3112,0,-188.029 dDocent_Contig_2559 32 . G A 521.276 . AB=0.131965;ABP=404.198;AC=3;AF=0.5;AN=6;AO=45;CIGAR=1X;DP=341;DPB=341;DPRA=0;EPP=100.727;EPPR=645.766;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=1770;QR=11853;RO=296;RPL=0;RPP=100.727;RPPR=645.766;RPR=45;RUN=1;SAF=45;SAP=100.727;SAR=0;SRF=296;SRP=645.766;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:222:200,22:200:8028:22:882:-12.8595,0,-655.235 0/1:44:31,13:31:1239:13:491:-31.2803,0,-98.5397 0/1:75:65,10:65:2586:10:397:-13.5106,0,-210.295 dDocent_Contig_2560 38 . C T 1481.81 . AB=0.744681;ABP=27.4509;AC=4;AF=0.666667;AN=6;AO=47;CIGAR=1X;DP=59;DPB=59;DPRA=0;EPP=105.07;EPPR=29.068;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=3.46945e-18;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=1832;QR=488;RO=12;RPL=0;RPP=105.07;RPPR=29.068;RPR=47;RUN=1;SAF=47;SAP=105.07;SAR=0;SRF=12;SRP=29.068;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:24:6,18:6:244:18:702:-56.2714,0,-15.1141 1/1:12:0,12:0:0:12:450:-40.8289,-3.61236,0 0/1:23:6,17:6:244:17:680:-54.6039,0,-15.4151 dDocent_Contig_2561 12 . T A 396.422 . AB=0.25;ABP=48.6112;AC=3;AF=0.5;AN=6;AO=21;CIGAR=1X1M2X;DP=84;DPB=84;DPRA=0;EPP=48.6112;EPPR=139.813;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=771;QR=2393;RO=63;RPL=0;RPP=48.6112;RPPR=139.813;RPR=21;RUN=1;SAF=21;SAP=48.6112;SAR=0;SRF=63;SRP=139.813;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|1:51:41,10:41:1567:10:368:-18.1164,0,-125.941 0|1:14:9,5:9:337:5:184:-12.704,0,-26.4662 0|1:19:13,6:13:489:6:219:-14.3446,0,-38.6348 dDocent_Contig_2562 98 . N A 967.32 . AB=0;ABP=0;AC=6;AF=1;AN=6;AO=31;CIGAR=1X;DP=31;DPB=31;DPRA=0;EPP=70.3259;EPPR=0;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=0;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=1057;QR=0;RO=0;RPL=31;RPP=70.3259;RPPR=0;RPR=0;RUN=1;SAF=31;SAP=70.3259;SAR=0;SRF=0;SRP=0;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 1/1:17:0,17:0:0:17:567:-51.3461,-5.11751,0 1/1:5:0,5:0:0:5:177:-16.277,-1.50515,0 1/1:9:0,9:0:0:9:313:-28.5068,-2.70927,0 dDocent_Contig_2563 7 . A C 1923.29 . AB=0.278523;ABP=129.976;AC=3;AF=0.5;AN=6;AO=83;CIGAR=1X;DP=298;DPB=298;DPRA=0;EPP=183.243;EPPR=463.362;GTI=0;LEN=1;MEANALT=2;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=0.962264;PAO=0;PQA=0;PQR=0;PRO=0;QA=3186;QR=8073;RO=212;RPL=0;RPP=183.243;RPPR=463.362;RPR=83;RUN=1;SAF=83;SAP=183.243;SAR=0;SRF=212;SRP=463.362;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:211:156,54:156:5938:54:2081:-123.965,0,-470.825 0/1:22:15,6:15:567:6:228:-14.2162,0,-44.707 0/1:65:41,23:41:1568:23:877:-59.6708,0,-121.814 dDocent_Contig_2565 205 . T G 4814.42 . AB=0.741379;ABP=120.42;AC=3;AF=0.5;AN=6;AO=172;CIGAR=1X;DP=232;DPB=232;DPRA=0;EPP=376.504;EPPR=133.299;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=0.988372;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=6178;QR=2144;RO=60;RPL=172;RPP=376.504;RPPR=133.299;RPR=0;RUN=1;SAF=0;SAP=376.504;SAR=172;SRF=0;SRP=133.299;SRR=60;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:86:27,59:27:971:59:2146:-167.51,0,-61.8154 0/1:92:25,67:25:902:67:2400:-188.552,0,-53.8048 0/1:54:8,46:8:271:46:1632:-130.903,0,-8.46044 dDocent_Contig_2566 72 . G C 123.126 . AB=0.141791;ABP=152.356;AC=2;AF=0.333333;AN=6;AO=22;CIGAR=1X;DP=307;DPB=307;DPRA=0;EPP=50.7827;EPPR=621.88;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=6.93889e-18;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=718;QR=9151;RO=285;RPL=22;RPP=50.7827;RPPR=621.88;RPR=0;RUN=1;SAF=22;SAP=50.7827;SAR=0;SRF=285;SRP=621.88;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:173:170,3:170:5496:3:101:0,-42.6547,-485.405 0/1:57:47,10:47:1515:10:328:-12.681,0,-119.479 0/1:77:68,9:68:2140:9:289:-3.1443,0,-169.687 dDocent_Contig_2567 29 . T C 3234.71 . AB=0.354651;ABP=66.1345;AC=3;AF=0.5;AN=6;AO=122;CIGAR=1X;DP=344;DPB=344;DPRA=0;EPP=267.93;EPPR=485.077;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=59.6351;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=0.981982;PAO=0;PQA=0;PQR=0;PRO=0;QA=4798;QR=8540;RO=222;RPL=0;RPP=267.93;RPPR=485.077;RPR=122;RUN=1;SAF=122;SAP=267.93;SAR=0;SRF=222;SRP=485.077;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:169:92,77:92:3548:77:3040:-222.834,0,-268.517 0/1:43:31,12:31:1170:12:462:-28.9852,0,-92.0127 0/1:132:99,33:99:3822:33:1296:-77.1743,0,-304.264 dDocent_Contig_2568 54 . C A 1688.05 . AB=0.423611;ABP=10.3089;AC=3;AF=0.5;AN=6;AO=61;CIGAR=1X;DP=144;DPB=144;DPRA=0;EPP=135.47;EPPR=183.243;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=2408;QR=3289;RO=83;RPL=61;RPP=135.47;RPPR=183.243;RPR=0;RUN=1;SAF=61;SAP=135.47;SAR=0;SRF=83;SRP=183.243;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:90:58,32:58:2318:32:1268:-87.3004,0,-181.691 0/1:14:7,7:7:269:7:280:-21.3571,0,-20.3555 0/1:40:18,22:18:702:22:860:-65.6703,0,-51.4608 dDocent_Contig_2570 24 . A T 102.286 . AB=0.230769;ABP=19.3799;AC=1;AF=0.166667;AN=6;AO=8;CIGAR=2X;DP=177;DPB=177;DPRA=0.472527;EPP=20.3821;EPPR=369.989;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=284;QR=6575;RO=169;RPL=0;RPP=20.3821;RPPR=369.989;RPR=8;RUN=1;SAF=8;SAP=20.3821;SAR=0;SRF=169;SRP=369.989;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|0:91:91,0:91:3504:0:0:0,-27.3937,-315.42 0|1:26:20,6:20:790:6:217:-12.0525,0,-63.5879 0|0:60:58,2:58:2281:2:67:0,-11.6987,-199.107 dDocent_Contig_2571 21 . C T 5092.99 . AB=0.702439;ABP=75.9824;AC=4;AF=0.666667;AN=6;AO=158;CIGAR=1X;DP=219;DPB=219;DPRA=0;EPP=346.103;EPPR=135.47;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=1.38778e-17;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=6378;QR=2451;RO=61;RPL=0;RPP=346.103;RPPR=135.47;RPR=158;RUN=1;SAF=158;SAP=346.103;SAR=0;SRF=61;SRP=135.47;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:168:46,122:46:1841:122:4924:-392.451,0,-115.324 1/1:14:0,14:0:0:14:563:-51.0121,-4.21442,0 0/1:37:15,22:15:610:22:891:-69.3591,0,-44.0991 dDocent_Contig_2572 127 . G A 1963.19 . AB=0.541667;ABP=5.18177;AC=3;AF=0.5;AN=6;AO=78;CIGAR=1X;DP=144;DPB=144;DPRA=0;EPP=172.385;EPPR=146.327;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=2714;QR=2349;RO=66;RPL=0;RPP=172.385;RPPR=146.327;RPR=78;RUN=1;SAF=0;SAP=172.385;SAR=78;SRF=0;SRP=146.327;SRR=66;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:77:38,39:38:1350:39:1341:-97.8037,0,-98.6205 0/1:16:8,8:8:288:8:269:-19.719,0,-21.4509 0/1:51:20,31:20:711:31:1104:-84.3188,0,-48.9644 dDocent_Contig_2574 9 . G C 6463.18 . AB=0.852349;ABP=163.685;AC=4;AF=0.666667;AN=6;AO=201;CIGAR=1X;DP=223;DPB=223;DPRA=0;EPP=439.476;EPPR=50.7827;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=7697;QR=822;RO=22;RPL=0;RPP=439.476;RPPR=50.7827;RPR=201;RUN=1;SAF=201;SAP=439.476;SAR=0;SRF=22;SRP=50.7827;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 1/1:74:0,74:0:0:74:2861:-257.66,-22.2762,0 0/1:67:6,61:6:227:61:2318:-188.666,0,-0.624125 0/1:82:16,66:16:595:66:2518:-202.133,0,-29.1993 dDocent_Contig_2576 33 . G A 4143.02 . AB=0.656863;ABP=46.6101;AC=3;AF=0.5;AN=6;AO=134;CIGAR=1X;DP=204;DPB=204;DPRA=0;EPP=293.988;EPPR=155.013;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=5340;QR=2768;RO=70;RPL=0;RPP=293.988;RPPR=155.013;RPR=134;RUN=1;SAF=134;SAP=293.988;SAR=0;SRF=70;SRP=155.013;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:84:33,51:33:1319:51:2004:-155.262,0,-93.6861 0/1:48:15,33:15:579:33:1326:-105.15,0,-37.9902 0/1:72:22,50:22:870:50:2010:-159.413,0,-56.9354 dDocent_Contig_2577 7 . C A 91.9002 . AB=0.176471;ABP=33.9218;AC=1;AF=0.166667;AN=6;AO=6;CIGAR=1X;DP=79;DPB=79;DPRA=1.51111;EPP=16.0391;EPPR=161.528;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=232;QR=2828;RO=73;RPL=0;RPP=16.0391;RPPR=161.528;RPR=6;RUN=1;SAF=6;SAP=16.0391;SAR=0;SRF=73;SRP=161.528;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:39:39,0:39:1512:0:0:0,-11.7402,-136.352 0/0:6:6,0:6:230:0:0:0,-1.80618,-21.0668 0/1:34:28,6:28:1086:6:232:-11.0139,0,-87.8096 dDocent_Contig_2578 26 . T C 318.347 . AB=0.318182;ABP=15.6443;AC=2;AF=0.333333;AN=6;AO=16;CIGAR=1X;DP=70;DPB=70;DPRA=0;EPP=37.7539;EPPR=120.27;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=615;QR=2052;RO=54;RPL=0;RPP=37.7539;RPPR=120.27;RPR=16;RUN=1;SAF=16;SAP=37.7539;SAR=0;SRF=54;SRP=120.27;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:26:24,2:24:927:2:82:0,-0.0471021,-75.9611 0/1:7:6,1:6:231:1:40:-1.88847,0,-19.0499 0/1:37:24,13:24:894:13:493:-33.5579,0,-69.6262 dDocent_Contig_2579 52 . G A 207.078 . AB=0.141593;ABP=129.09;AC=2;AF=0.333333;AN=6;AO=16;CIGAR=1X;DP=133;DPB=133;DPRA=2.825;EPP=37.7539;EPPR=257.073;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=6.93889e-18;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=639;QR=4600;RO=117;RPL=16;RPP=37.7539;RPPR=257.073;RPR=0;RUN=1;SAF=16;SAP=37.7539;SAR=0;SRF=117;SRP=257.073;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:90:78,12:78:3052:12:476:-16.096,0,-247.672 0/0:20:20,0:20:784:0:0:0,-6.0206,-70.8764 0/1:23:19,4:19:764:4:163:-8.13474,0,-62.158 dDocent_Contig_2580 98 . N C 222.089 . AB=0;ABP=0;AC=2;AF=1;AN=2;AO=7;CIGAR=1X;DP=7;DPB=7;DPRA=0;EPP=18.2106;EPPR=0;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=0;NS=1;NUMALT=1;ODDS=9.4572;PAIRED=1;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=243;QR=0;RO=0;RPL=7;RPP=18.2106;RPPR=0;RPR=0;RUN=1;SAF=7;SAP=18.2106;SAR=0;SRF=0;SRP=0;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 1/1:7:0,7:0:0:7:243:-22.2088,-2.10721,0 ./.:.:.:.:.:.:.:. ./.:.:.:.:.:.:.:. dDocent_Contig_2581 8 . T A 124.965 . AB=0.195652;ABP=40.0197;AC=3;AF=0.5;AN=6;AO=9;CIGAR=1X;DP=46;DPB=46;DPRA=0;EPP=22.5536;EPPR=83.3548;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=334;QR=1402;RO=37;RPL=0;RPP=22.5536;RPPR=83.3548;RPR=9;RUN=1;SAF=9;SAP=22.5536;SAR=0;SRF=37;SRP=83.3548;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:19:17,2:17:646:2:74:-1.30586,0,-52.7543 0/1:14:10,4:10:381:4:155:-10.111,0,-30.4294 0/1:13:10,3:10:375:3:105:-5.87999,0,-30.1851 dDocent_Contig_2582 14 . T G 226.425 . AB=0.263158;ABP=21.525;AC=1;AF=0.166667;AN=6;AO=11;CIGAR=1X;DP=123;DPB=123;DPRA=2.91667;EPP=26.8965;EPPR=246.215;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=436;QR=4451;RO=112;RPL=0;RPP=26.8965;RPPR=246.215;RPR=11;RUN=1;SAF=11;SAP=26.8965;SAR=0;SRF=112;SRP=246.215;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:67:66,1:66:2606:1:41:0,-16.0744,-230.578 0/1:38:28,10:28:1115:10:395:-24.4664,0,-89.2006 0/0:18:18,0:18:730:0:0:0,-5.41854,-66.0245 dDocent_Contig_2583 24 . C A 1375.41 . AB=0.25641;ABP=123.611;AC=3;AF=0.5;AN=6;AO=60;CIGAR=1X;DP=234;DPB=234;DPRA=0;EPP=133.299;EPPR=380.846;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=1.38778e-17;PAIRED=0.966667;PAIREDR=0.977011;PAO=0;PQA=0;PQR=0;PRO=0;QA=2362;QR=6925;RO=174;RPL=0;RPP=133.299;RPPR=380.846;RPR=60;RUN=1;SAF=60;SAP=133.299;SAR=0;SRF=174;SRP=380.846;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:135:109,26:109:4369:26:1016:-51.0883,0,-352.508 0/1:31:24,7:24:906:7:264:-14.7788,0,-72.5067 0/1:68:41,27:41:1650:27:1082:-77.1968,0,-128.258 dDocent_Contig_2584 82 . A T 93.6978 . AB=0.238095;ABP=15.5221;AC=1;AF=0.166667;AN=6;AO=6;CIGAR=4M1X1M;DP=121;DPB=130.333;DPRA=0.430769;EPP=16.0391;EPPR=217.986;GTI=0;LEN=1;MEANALT=2.5;MQM=60;MQMR=60;NS=3;NUMALT=2;ODDS=6.93889e-18;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=210;QR=3183;RO=99;RPL=6;RPP=16.0391;RPPR=217.986;RPR=0;RUN=1;SAF=6;SAP=16.0391;SAR=0;SRF=99;SRP=217.986;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|0:65:56,7,0:56:1809:7,0:182,0:0,-2.4389,-146.488,-16.8577,-148.595,-162.86 0|1:21:10,5,5:10:301:5,5:129,174:-11.1937,-4.12023,-26.6882,0,-14.0232,-22.6148 0|0:35:33,1,1:33:1073:1,1:27,36:0,-7.85014,-94.1267,-6.95165,-91.4893,-93.3154 dDocent_Contig_2585 34 . G A 139.972 . AB=0.106061;ABP=269.904;AC=2;AF=0.333333;AN=6;AO=23;CIGAR=1X;DP=253;DPB=253;DPRA=0;EPP=52.9542;EPPR=502.449;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=59.8652;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=0.995652;PAO=0;PQA=0;PQR=0;PRO=0;QA=922;QR=9110;RO=230;RPL=0;RPP=52.9542;RPPR=502.449;RPR=23;RUN=1;SAF=23;SAP=52.9542;SAR=0;SRF=230;SRP=502.449;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:136:123,13:123:4893:13:530:-7.10653,0,-399.272 0/1:62:54,8:54:2106:8:319:-10.4136,0,-171.06 0/0:55:53,2:53:2111:2:73:0,-9.62658,-183.243 dDocent_Contig_2586 43 . C A 400.052 . AB=0.168919;ABP=143.921;AC=3;AF=0.5;AN=6;AO=25;CIGAR=1X;DP=148;DPB=148;DPRA=0;EPP=57.2971;EPPR=267.93;GTI=0;LEN=1;MEANALT=1.33333;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=6.93889e-18;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=990;QR=4829;RO=122;RPL=0;RPP=57.2971;RPPR=267.93;RPR=25;RUN=1;SAF=25;SAP=57.2971;SAR=0;SRF=122;SRP=267.93;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:56:45,10:45:1809:10:395:-18.9401,0,-146.049 0/1:38:31,7:31:1194:7:283:-14.4042,0,-96.2912 0/1:54:46,8:46:1826:8:312:-12.1838,0,-148.296 dDocent_Contig_2587 19 . T A 3288.62 . AB=0.595506;ABP=17.1127;AC=3;AF=0.5;AN=6;AO=106;CIGAR=1X4M;DP=178;DPB=178;DPRA=0;EPP=233.186;EPPR=124.613;GTI=0;LEN=1;MEANALT=2;MQM=60;MQMR=60;NS=3;NUMALT=2;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=4259;QR=2206;RO=56;RPL=0;RPP=233.186;RPPR=124.613;RPR=106;RUN=1;SAF=106;SAP=233.186;SAR=0;SRF=56;SRP=124.613;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|1:77:22,11,44:22:876:11,44:443,1784:-140.495,-110.606,-179.425,0,-35.6161,-58.8846 0|1:40:12,4,24:12:461:4,24:155,950:-74.573,-65.4535,-102.085,0,-25.1027,-30.6119 0|1:61:22,0,38:22:869:0,38:0,1525:-119.317,-125.94,-197.444,0,-71.785,-60.3458 dDocent_Contig_2588 10 . T C 1420.13 . AB=0.0633803;ABP=238.141;AC=0;AF=0;AN=6;AO=9;CIGAR=2X1M1X1M1X;DP=142;DPB=142;DPRA=0;EPP=22.5536;EPPR=176.728;GTI=0;LEN=1;MEANALT=2;MQM=19;MQMR=60;NS=3;NUMALT=2;ODDS=0;PAIRED=0;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=352;QR=3127;RO=80;RPL=0;RPP=22.5536;RPPR=176.728;RPR=9;RUN=1;SAF=9;SAP=22.5536;SAR=0;SRF=80;SRP=176.728;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|0:59:34,5,20:34:1346:5,20:194,797:-55.4657,-58.7243,-167.994,0,-103.964,-104.935 0|0:16:6,1,9:6:235:1,9:37,354:-26.844,-27.2669,-46.2923,0,-18.123,-16.7878 0|0:67:40,3,24:40:1546:3,24:121,941:-65.2261,-73.0712,-199.135,0,-122.947,-119.927 dDocent_Contig_2590 115 . C A 5011.95 . AB=0.837302;ABP=252.04;AC=3;AF=0.5;AN=6;AO=211;CIGAR=1X;DP=252;DPB=252;DPRA=0;EPP=461.191;EPPR=92.0407;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=6464;QR=1357;RO=41;RPL=0;RPP=461.191;RPPR=92.0407;RPR=211;RUN=1;SAF=0;SAP=461.191;SAR=211;SRF=0;SRP=92.0407;SRR=41;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:144:27,117:27:891:117:3583:-279.357,0,-37.1453 0/1:40:5,35:5:162:35:1098:-87.0716,0,-2.85794 0/1:68:9,59:9:304:59:1783:-140.269,0,-7.21805 dDocent_Contig_2591 1 . N G 43.2086 . AB=0;ABP=0;AC=2;AF=1;AN=2;AO=2;CIGAR=1X;DP=2;DPB=2;DPRA=0;EPP=7.35324;EPPR=0;GTI=0;LEN=1;MEANALT=1;MQM=23;MQMR=0;NS=1;NUMALT=1;ODDS=5.99146;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=70;QR=0;RO=0;RPL=0;RPP=7.35324;RPPR=0;RPR=2;RUN=1;SAF=0;SAP=7.35324;SAR=2;SRF=0;SRP=0;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL ./.:.:.:.:.:.:.:. ./.:.:.:.:.:.:.:. 1/1:2:0,2:0:0:2:70:-4.31976,-0.60206,0 dDocent_Contig_2593 43 . T C 70.9259 . AB=0.172414;ABP=30.0414;AC=1;AF=0.166667;AN=6;AO=7;CIGAR=1X;DP=90;DPB=90;DPRA=2.14706;EPP=18.2106;EPPR=183.243;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=0.927711;PAO=0;PQA=0;PQR=0;PRO=0;QA=272;QR=3305;RO=83;RPL=0;RPP=18.2106;RPPR=183.243;RPR=7;RUN=1;SAF=7;SAP=18.2106;SAR=0;SRF=83;SRP=183.243;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:44:42,2:42:1662:2:80:0,-5.65374,-142.219 0/0:17:17,0:17:678:0:0:0,-5.11751,-61.3506 0/1:29:24,5:24:965:5:192:-8.9165,0,-78.4177 dDocent_Contig_2594 20 . A T 308.997 . AB=0.183673;ABP=88.1852;AC=3;AF=0.5;AN=6;AO=18;CIGAR=2X;DP=98;DPB=98;DPRA=0;EPP=42.0968;EPPR=176.728;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=720;QR=3163;RO=80;RPL=0;RPP=42.0968;RPPR=176.728;RPR=18;RUN=1;SAF=18;SAP=42.0968;SAR=0;SRF=80;SRP=176.728;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|1:50:41,9:41:1627:9:360:-17.7118,0,-131.617 0|1:17:14,3:14:540:3:118:-5.88538,0,-43.8185 0|1:31:25,6:25:996:6:242:-12.8254,0,-80.6067 dDocent_Contig_2595 23 . T C 514.884 . AB=0.26506;ABP=42.8032;AC=2;AF=0.333333;AN=6;AO=24;CIGAR=1X;DP=148;DPB=148;DPRA=0;EPP=55.1256;EPPR=272.273;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=961;QR=4662;RO=124;RPL=0;RPP=55.1256;RPPR=272.273;RPR=24;RUN=1;SAF=24;SAP=55.1256;SAR=0;SRF=124;SRP=272.273;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:65:63,2:63:2396:2:80:0,-11.9752,-208.255 0/1:27:22,5:22:809:5:203:-10.525,0,-64.9946 0/1:56:39,17:39:1457:17:678:-44.4862,0,-114.545 dDocent_Contig_2596 35 . C T 374.888 . AB=0.147541;ABP=200.472;AC=3;AF=0.5;AN=6;AO=27;CIGAR=1X;DP=183;DPB=183;DPRA=0;EPP=61.6401;EPPR=341.76;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=1.38778e-17;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=1078;QR=6265;RO=156;RPL=0;RPP=61.6401;RPPR=341.76;RPR=27;RUN=1;SAF=27;SAP=61.6401;SAR=0;SRF=156;SRP=341.76;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:104:93,11:93:3723:11:445:-9.09859,0,-303.766 0/1:30:24,6:24:971:6:233:-12.3071,0,-78.6575 0/1:49:39,10:39:1571:10:400:-21.6061,0,-126.876 dDocent_Contig_2597 28 . T A 2510.15 . AB=0.638655;ABP=22.882;AC=4;AF=0.666667;AN=6;AO=76;CIGAR=1X2M;DP=119;DPB=119;DPRA=0;EPP=168.042;EPPR=55.1256;GTI=0;LEN=1;MEANALT=2.33333;MQM=60;MQMR=60;NS=3;NUMALT=3;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=3005;QR=953;RO=24;RPL=0;RPP=168.042;RPPR=55.1256;RPR=76;RUN=1;SAF=76;SAP=168.042;SAR=0;SRF=24;SRP=55.1256;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|1:39:14,2,2,21:14:553:2,2,21:79,78,823:-63.4552,-61.1684,-106.072,-61.258,-100.262,-106.161,0,-39.0053,-39.0951,-39.1847 0|1:32:3,0,3,26:3:120:0,3,26:0,119,1035:-84.3148,-85.2178,-95.1031,-75.4219,-85.3072,-84.4041,0,-9.88669,-0.0922956,-2.05991 1|1:48:7,0,12,29:7:280:0,12,29:0,478,1147:-108.575,-110.682,-133.747,-71.3206,-94.386,-90.7736,-16.2947,-39.3599,0,-30.63 dDocent_Contig_2598 9 . C T 14723.5 . AB=0.0265957;ABP=1100.9;AC=0;AF=0;AN=6;AO=15;CIGAR=2X;DP=564;DPB=564;DPRA=0;EPP=35.5824;EPPR=152.842;GTI=0;LEN=1;MEANALT=3;MQM=60;MQMR=60;NS=3;NUMALT=3;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=587;QR=2675;RO=69;RPL=0;RPP=35.5824;RPPR=152.842;RPR=15;RUN=1;SAF=15;SAP=35.5824;SAR=0;SRF=69;SRP=152.842;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|0:318:45,2,16,255:45:1742:2,16,255:80,628,10149:-822.037,-828.993,-971.482,-783.934,-920.435,-922.209,0,-136.498,-91.4378,-66.3257 0|0:79:8,2,6,63:8:310:2,6,63:77,236,2492:-202.392,-198.479,-223.343,-185.88,-205.025,-209.541,0,-19.1467,-6.5485,-6.50381 0|0:167:16,11,1,139:16:623:11,1,139:430,39,5563:-453.448,-422.913,-470.802,-455.058,-470.908,-505.958,0,-15.8484,-47.9953,-9.35805 dDocent_Contig_2599 10 . A G 2105.29 . AB=0.775281;ABP=61.5913;AC=3;AF=0.5;AN=6;AO=69;CIGAR=1X;DP=89;DPB=89;DPRA=0;EPP=152.842;EPPR=46.4397;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=0.95;PAO=0;PQA=0;PQR=0;PRO=0;QA=2688;QR=794;RO=20;RPL=0;RPP=152.842;RPPR=46.4397;RPR=69;RUN=1;SAF=69;SAP=152.842;SAR=0;SRF=20;SRP=46.4397;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:60:12,48:12:475:48:1837:-147.472,0,-25.0381 0/1:16:6,10:6:240:10:405:-31.9931,0,-17.159 0/1:13:2,11:2:79:11:446:-36.5828,0,-3.58385 dDocent_Contig_2600 9 . C T 288.461 . AB=0.235294;ABP=44.396;AC=2;AF=0.333333;AN=6;AO=16;CIGAR=1X;DP=86;DPB=86;DPRA=1.88889;EPP=37.7539;EPPR=146.452;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=0.828571;PAO=0;PQA=0;PQR=0;PRO=0;QA=580;QR=2695;RO=70;RPL=0;RPP=37.7539;RPPR=155.013;RPR=16;RUN=1;SAF=16;SAP=37.7539;SAR=0;SRF=69;SRP=146.452;SRR=1;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:52:39,13:39:1511:13:491:-28.8805,0,-120.608 0/0:18:18,0:18:684:0:0:0,-5.41854,-61.8921 0/1:16:13,3:13:500:3:89:-3.48377,0,-40.5301 dDocent_Contig_2601 1 . N G 382.84 . AB=0;ABP=0;AC=6;AF=1;AN=6;AO=10;CIGAR=1X;DP=10;DPB=10;DPRA=0;EPP=24.725;EPPR=0;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=0;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=407;QR=0;RO=0;RPL=0;RPP=24.725;RPPR=0;RPR=10;RUN=1;SAF=10;SAP=24.725;SAR=0;SRF=0;SRP=0;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 1/1:4:0,4:0:0:4:163:-15.0584,-1.20412,0 1/1:5:0,5:0:0:5:203:-18.6531,-1.50515,0 1/1:1:0,1:0:0:1:41:-4.09457,-0.30103,0 dDocent_Contig_2603 10 . G T 168.703 . AB=0.0666667;ABP=51.9408;AC=0;AF=0;AN=6;AO=2;CIGAR=3X3M1X4M;DP=76;DPB=76;DPRA=0;EPP=3.0103;EPPR=98.5551;GTI=0;LEN=1;MEANALT=5;MQM=25;MQMR=60;NS=3;NUMALT=5;ODDS=0;PAIRED=0;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=50;QR=1690;RO=44;RPL=0;RPP=7.35324;RPPR=98.5551;RPR=2;RUN=1;SAF=1;SAP=3.0103;SAR=1;SRF=44;SRP=98.5551;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|0:24:17,2,0,1,3,0:17:649:2,0,1,3,0:60,0,41,122,0:-4.97528,-5.87505,-58.4948,-10.0928,-59.0968,-63.3436,-6.70159,-55.7117,-59.9581,-59.6571,0,-49.0306,-53.2762,-49.8903,-52.3731,-10.0928,-59.0968,-63.3436,-59.9581,-53.2762,-63.3436 0|0:30:11,0,2,3,11,2:11:417:0,2,3,11,2:0,50,108,211,79:-9.59657,-12.9079,-47.1461,-9.55228,-43.7936,-43.1915,-4.07479,-38.3284,-34.9758,-37.4253,0,-34.2133,-30.8723,-25.4034,-30.902,-6.80349,-41.0518,-37.6992,-32.2327,-28.1235,-40.4497 0|0:22:16,0,0,4,0,0:16:624:0,0,4,0,0:0,0,154,0,0:-7.82115,-12.6376,-63.9313,-12.6376,-63.9313,-63.9313,0,-51.288,-51.288,-50.0839,-12.6376,-63.9313,-63.9313,-51.288,-63.9313,-12.6376,-63.9313,-63.9313,-51.288,-63.9313,-63.9313 dDocent_Contig_2604 107 . N T 669.278 . AB=0;ABP=0;AC=4;AF=1;AN=4;AO=22;CIGAR=1X;DP=22;DPB=22;DPRA=0;EPP=50.7827;EPPR=0;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=0;NS=2;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=733;QR=0;RO=0;RPL=0;RPP=50.7827;RPPR=0;RPR=22;RUN=1;SAF=0;SAP=50.7827;SAR=22;SRF=0;SRP=0;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 1/1:3:0,3:0:0:3:104:-9.70309,-0.90309,0 1/1:19:0,19:0:0:19:629:-56.9234,-5.71957,0 ./.:.:.:.:.:.:.:. dDocent_Contig_2605 10 . G A 35.1467 . AB=0.0879121;ABP=405.687;AC=1;AF=0.166667;AN=6;AO=42;CIGAR=1X;DP=619;DPB=619;DPRA=0;EPP=94.2121;EPPR=1225.69;GTI=0;LEN=1;MEANALT=1.33333;MQM=59.5238;MQMR=59.2157;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=0.986087;PAO=0;PQA=0;PQR=0;PRO=0;QA=1687;QR=22803;RO=575;RPL=0;RPP=94.2121;RPPR=1251.61;RPR=42;RUN=1;SAF=42;SAP=94.2121;SAR=0;SRF=572;SRP=1225.69;SRR=3;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:273:247,24:247:9863:24:963:-5.03742,0,-800.285 0/0:159:152,7:152:5999:7:282:0,-22.1108,-510.429 0/0:187:176,11:176:6941:11:442:0,-16.4745,-584.252 dDocent_Contig_2606 7 . C A 9120.18 . AB=0.525974;ABP=6.62002;AC=3;AF=0.5;AN=6;AO=324;CIGAR=1X;DP=616;DPB=616;DPRA=0;EPP=706.567;EPPR=634.909;GTI=0;LEN=1;MEANALT=1.33333;MQM=60;MQMR=59.8419;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=0.989691;PAO=0;PQA=0;PQR=0;PRO=0;QA=12252;QR=11125;RO=291;RPL=0;RPP=706.567;RPPR=634.909;RPR=324;RUN=1;SAF=324;SAP=706.567;SAR=0;SRF=291;SRP=634.909;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:308:141,166:141:5394:166:6286:-472.962,0,-390.488 0/1:152:72,80:72:2751:80:3010:-225.325,0,-202.018 0/1:156:78,78:78:2980:78:2956:-219.254,0,-221.409 dDocent_Contig_2607 98 . N T 864.427 . AB=0;ABP=0;AC=4;AF=1;AN=4;AO=28;CIGAR=1X;DP=28;DPB=28;DPRA=0;EPP=63.8115;EPPR=0;GTI=0;LEN=1;MEANALT=1;MQM=59.2143;MQMR=0;NS=2;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=950;QR=0;RO=0;RPL=28;RPP=63.8115;RPPR=0;RPR=0;RUN=1;SAF=28;SAP=63.8115;SAR=0;SRF=0;SRP=0;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 1/1:16:0,16:0:0:16:542:-49.0964,-4.81648,0 ./.:.:.:.:.:.:.:. 1/1:12:0,12:0:0:12:408:-37.0453,-3.61236,0 dDocent_Contig_2608 17 . T C 47214.4 . AB=0.266334;ABP=859.499;AC=6;AF=1;AN=6;AO=481;CIGAR=1X3M;DP=1806;DPB=1806;DPRA=0;EPP=1047.49;EPPR=85.7331;GTI=0;LEN=1;MEANALT=12;MQM=58.8212;MQMR=58.3333;NS=3;NUMALT=3;ODDS=0;PAIRED=0.952183;PAIREDR=0.880952;PAO=0;PQA=0;PQR=0;PRO=0;QA=19068;QR=1669;RO=42;RPL=0;RPP=1047.49;RPPR=94.2121;RPR=481;RUN=1;SAF=481;SAP=1047.49;SAR=0;SRF=41;SRP=85.7331;SRR=1;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 1|1:1008:29,592,266,47:29:1145:592,266,47:23423,10516,1851:-2638.58,-770.122,-684.354,-1784.75,0,-1797.11,-2502.78,-718.043,-1732.67,-2581.08 1|1:191:9,93,63,12:9:362:93,63,12:3670,2491,479:-464.622,-173.545,-175.384,-263.959,0,-274.829,-430.67,-166.721,-257.134,-456.892 1|1:607:4,363,152,36:4:162:363,152,36:14308,6061,1447:-1623.77,-484.929,-389.013,-1126.68,0,-1094.28,-1508.58,-381.893,-1023.65,-1511.1 dDocent_Contig_2611 8 . T C 113.524 . AB=0.375;ABP=6.26751;AC=1;AF=0.166667;AN=6;AO=9;CIGAR=1X1M2X;DP=47;DPB=47;DPRA=2.08696;EPP=22.5536;EPPR=85.5263;GTI=0;LEN=1;MEANALT=1;MQM=24.6667;MQMR=60;NS=3;NUMALT=1;ODDS=1.73472e-18;PAIRED=0;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=353;QR=1482;RO=38;RPL=0;RPP=22.5536;RPPR=85.5263;RPR=9;RUN=1;SAF=9;SAP=22.5536;SAR=0;SRF=38;SRP=85.5263;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|1:24:15,9:15:583:9:353:-12.8752,0,-45.5874 0|0:7:7,0:7:268:0:0:0,-2.10721,-24.483 0|0:16:16,0:16:631:0:0:0,-4.81648,-57.1288 dDocent_Contig_2612 98 . N T 165.558 . AB=0;ABP=0;AC=4;AF=1;AN=4;AO=5;CIGAR=1X;DP=5;DPB=5;DPRA=0;EPP=13.8677;EPPR=0;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=0;NS=2;NUMALT=1;ODDS=0;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=173;QR=0;RO=0;RPL=5;RPP=13.8677;RPPR=0;RPR=0;RUN=1;SAF=5;SAP=13.8677;SAR=0;SRF=0;SRP=0;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 1/1:3:0,3:0:0:3:105:-9.79609,-0.90309,0 ./.:.:.:.:.:.:.:. 1/1:2:0,2:0:0:2:68:-6.45788,-0.60206,0 dDocent_Contig_2613 54 . C T 101.98 . AB=0.126761;ABP=88.9211;AC=1;AF=0.166667;AN=6;AO=14;CIGAR=1X;DP=288;DPB=288;DPRA=3.86364;EPP=33.4109;EPPR=597.994;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=568;QR=10734;RO=274;RPL=14;RPP=33.4109;RPPR=597.994;RPR=0;RUN=1;SAF=14;SAP=33.4109;SAR=0;SRF=274;SRP=597.994;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:184:179,5:179:7037:5:201:0,-36.919,-614.531 0/0:33:33,0:33:1269:0:0:0,-9.93399,-114.464 0/1:71:62,9:62:2428:9:367:-12.0219,0,-197.288 dDocent_Contig_2614 60 . A G 106.897 . AB=0.194444;ABP=32.2045;AC=2;AF=0.333333;AN=6;AO=7;CIGAR=1X;DP=94;DPB=94;DPRA=0.310345;EPP=18.2106;EPPR=191.928;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=0;PAIREDR=0.747126;PAO=0;PQA=0;PQR=0;PRO=0;QA=270;QR=3384;RO=87;RPL=7;RPP=18.2106;RPPR=191.928;RPR=0;RUN=1;SAF=7;SAP=18.2106;SAR=0;SRF=87;SRP=191.928;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:58:58,0:58:2263:0:0:0,-17.4597,-203.831 0/1:14:11,3:11:428:3:114:-6.41793,0,-34.6535 0/1:22:18,4:18:693:4:156:-7.79463,0,-56.081 dDocent_Contig_2615 12 . T A 6019.96 . AB=0.525907;ABP=5.26053;AC=3;AF=0.5;AN=6;AO=203;CIGAR=1X;DP=386;DPB=386;DPRA=0;EPP=443.819;EPPR=400.39;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=59.9891;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=8037;QR=7301;RO=183;RPL=0;RPP=443.819;RPPR=400.39;RPR=203;RUN=1;SAF=203;SAP=443.819;SAR=0;SRF=183;SRP=400.39;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:254:124,130:124:4932:130:5126:-384.762,0,-367.289 0/1:45:17,28:17:686:28:1125:-87.9861,0,-48.5234 0/1:87:42,45:42:1683:45:1786:-134.77,0,-125.503 dDocent_Contig_2617 17 . C A 132.614 . AB=0.144737;ABP=86.3263;AC=2;AF=0.333333;AN=6;AO=11;CIGAR=1X2M1X;DP=101;DPB=101;DPRA=1.52;EPP=26.8965;EPPR=196.271;GTI=0;LEN=1;MEANALT=1.5;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=433;QR=3507;RO=89;RPL=0;RPP=26.8965;RPPR=196.271;RPR=11;RUN=1;SAF=11;SAP=26.8965;SAR=0;SRF=89;SRP=196.271;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|1:55:47,7:47:1862:7:276:-8.59712,0,-151.183 0|1:21:17,4:17:658:4:157:-8.18717,0,-53.2289 0|0:25:25,0:25:987:0:0:0,-7.52575,-89.13 dDocent_Contig_2618 10 . C T 1210.76 . AB=0.0967742;ABP=46.79;AC=0;AF=0;AN=6;AO=3;CIGAR=2X3M1X1M1X;DP=98;DPB=98;DPRA=0;EPP=9.52472;EPPR=98.5551;GTI=0;LEN=1;MEANALT=3;MQM=60;MQMR=60;NS=3;NUMALT=3;ODDS=1.38778e-17;PAIRED=0;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=120;QR=1716;RO=44;RPL=0;RPP=9.52472;RPPR=98.5551;RPR=3;RUN=1;SAF=3;SAP=9.52472;SAR=0;SRF=44;SRP=98.5551;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|0:42:19,0,2,19:19:735:0,2,19:0,81,766:-57.4196,-63.1392,-123.502,-56.4599,-116.823,-116.221,0,-60.3575,-53.6769,-54.638 0|0:25:12,0,2,10:12:471:0,2,10:0,79,405:-29.7873,-33.3996,-72.1312,-26.9003,-65.6305,-65.0285,0,-38.731,-32.2299,-35.7207 0|0:31:13,3,2,13:13:510:3,2,13:120,80,530:-39.3917,-33.4204,-74.4535,-36.7152,-68.7663,-78.0497,0,-32.0495,-35.345,-38.0224 dDocent_Contig_2619 8 . T A 21104.5 . AB=0.57299;ABP=62.2876;AC=3;AF=0.5;AN=6;AO=734;CIGAR=1X;DP=1281;DPB=1281;DPRA=0;EPP=1588.2;EPPR=1182.14;GTI=0;LEN=1;MEANALT=1;MQM=59.5204;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=0.540872;PAIREDR=0.202925;PAO=0;PQA=0;PQR=0;PRO=0;QA=27837;QR=21052;RO=547;RPL=0;RPP=1596.87;RPPR=1190.81;RPR=734;RUN=1;SAF=733;SAP=1588.2;SAR=1;SRF=546;SRP=1182.14;SRR=1;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:495:171,324:171:6599:324:12378:-962.252,0,-444.791 0/1:369:185,184:185:7088:184:6886:-507.968,0,-526.708 0/1:417:191,226:191:7365:226:8573:-645.753,0,-537.152 dDocent_Contig_2620 37 . C T 1039.49 . AB=0.564516;ABP=5.25182;AC=3;AF=0.5;AN=6;AO=35;CIGAR=1X;DP=62;DPB=62;DPRA=0;EPP=79.0118;EPPR=61.6401;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=1412;QR=1084;RO=27;RPL=0;RPP=79.0118;RPPR=61.6401;RPR=35;RUN=1;SAF=35;SAP=79.0118;SAR=0;SRF=27;SRP=61.6401;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:22:11,11:11:434:11:446:-33.8733,0,-32.7887 0/1:17:6,11:6:243:11:444:-35.1972,0,-17.1307 0/1:23:10,13:10:407:13:522:-40.4017,0,-30.0667 dDocent_Contig_2621 7 . C T 14077.3 . AB=0;ABP=0;AC=0;AF=0;AN=6;AO=5;CIGAR=1X1M1X3M1X;DP=445;DPB=445;DPRA=1.18561;EPP=13.8677;EPPR=35.5824;GTI=0;LEN=1;MEANALT=2.5;MQM=25.6;MQMR=60;NS=3;NUMALT=2;ODDS=0;PAIRED=0;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=190;QR=592;RO=15;RPL=0;RPP=13.8677;RPPR=35.5824;RPR=5;RUN=1;SAF=5;SAP=13.8677;SAR=0;SRF=15;SRP=35.5824;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|0:250:8,1,241:8:317:1,241:38,9292:-807.089,-808.005,-833.798,-46.2807,-71.0772,0 0|0:63:0,4,58:0:0:4,58:152,2203:-198.199,-189.812,-188.608,-17.4597,-9.1644,0 0|0:132:7,0,123:7:275:0,123:0,4745:-401.962,-404.069,-426.689,-14.3977,-37.0267,0 dDocent_Contig_2622 9 . C T 182.547 . AB=0.186441;ABP=53.3958;AC=2;AF=0.333333;AN=6;AO=12;CIGAR=2X;DP=96;DPB=96;DPRA=0;EPP=29.068;EPPR=185.414;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=470;QR=3295;RO=84;RPL=0;RPP=29.068;RPPR=185.414;RPR=12;RUN=1;SAF=12;SAP=29.068;SAR=0;SRF=84;SRP=185.414;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|0:37:36,1:36:1404:1:39:0,-7.24155,-122.731 0|1:17:13,4:13:509:4:158:-9.48314,0,-41.0406 0|1:42:35,7:35:1382:7:273:-12.2944,0,-112.007 dDocent_Contig_2623 57 . C T 96.2722 . AB=0.25;ABP=13.8677;AC=1;AF=0.166667;AN=6;AO=5;CIGAR=1M1X7M;DP=44;DPB=43.7778;DPRA=3.33333;EPP=13.8677;EPPR=74.9036;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=2;ODDS=0;PAIRED=1;PAIREDR=0.972973;PAO=0;PQA=0;PQR=0;PRO=0;QA=190;QR=1421;RO=37;RPL=5;RPP=13.8677;RPPR=83.3548;RPR=0;RUN=1;SAF=5;SAP=13.8677;SAR=0;SRF=36;SRP=74.9036;SRR=1;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|0:18:16,2,0:16:615:2,0:65,0:-0.754746,0,-50.2643,-5.57123,-50.8663,-56.1061 0|0:6:6,0,0:6:233:0,0:0,0:0,-1.80618,-21.3387,-1.80618,-21.3387,-21.3387 0|1:20:15,0,5:15:573:0,5:0,190:-11.4429,-15.9584,-62.9716,0,-47.3934,-45.8883 dDocent_Contig_2624 50 . G A 356.531 . AB=0.13615;ABP=247.938;AC=3;AF=0.5;AN=6;AO=29;CIGAR=1X;DP=213;DPB=213;DPRA=0;EPP=65.983;EPPR=402.561;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=1.38778e-17;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=1158;QR=7267;RO=184;RPL=29;RPP=65.983;RPPR=402.561;RPR=0;RUN=1;SAF=29;SAP=65.983;SAR=0;SRF=184;SRP=402.561;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:121:106,15:106:4152:15:602:-18.0931,0,-337.245 0/1:31:24,7:24:951:7:279:-16.1477,0,-76.5628 0/1:61:54,7:54:2164:7:277:-6.93514,0,-176.572 dDocent_Contig_2625 7 . T C 3195.72 . AB=0.497462;ABP=3.02132;AC=3;AF=0.5;AN=6;AO=98;CIGAR=1X1M1X1M1X;DP=197;DPB=197;DPRA=0;EPP=215.815;EPPR=76.8404;GTI=0;LEN=1;MEANALT=4;MQM=53.5714;MQMR=60;NS=3;NUMALT=3;ODDS=0;PAIRED=0.561224;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=3759;QR=1300;RO=34;RPL=0;RPP=215.815;RPPR=76.8404;RPR=98;RUN=1;SAF=98;SAP=215.815;SAR=0;SRF=34;SRP=76.8404;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 1|0:99:14,51,19,8:14:538:51,19,8:1966,722,323:-170.734,-15.0407,-43.8555,-115.74,0,-154.187,-148.32,-32.5775,-133.278,-190.078 0|1:30:5,19,5,1:5:190:19,5,1:719,181,39:-56.714,0,-9.86798,-43.4483,-0.823041,-57.5256,-55.0125,-12.38,-55.8243,-70.2944 1|0:68:15,28,20,5:15:572:28,20,5:1074,777,204:-97.6264,-16.9291,-55.4207,-38.2883,0,-79.1936,-85.3077,-47.0154,-68.3794,-130.728 dDocent_Contig_2627 14 . C T 246.575 . AB=0.210526;ABP=44.4969;AC=1;AF=0.166667;AN=6;AO=12;CIGAR=1X;DP=204;DPB=204;DPRA=0.77551;EPP=29.068;EPPR=419.933;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=59.9896;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=481;QR=7749;RO=192;RPL=0;RPP=29.068;RPPR=419.933;RPR=12;RUN=1;SAF=12;SAP=29.068;SAR=0;SRF=192;SRP=419.933;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:120:120,0:120:4853:0:0:0,-36.1236,-436.634 0/0:27:27,0:27:1079:0:0:0,-8.12781,-97.3919 0/1:57:45,12:45:1817:12:481:-26.4814,0,-146.576 dDocent_Contig_2628 37 . G T 2095.38 . AB=0.0324324;ABP=354.308;AC=0;AF=0;AN=6;AO=6;CIGAR=2X1M1X4M;DP=242;DPB=242;DPRA=0;EPP=16.0391;EPPR=278.787;GTI=0;LEN=1;MEANALT=3.5;MQM=60;MQMR=60;NS=3;NUMALT=3;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=240;QR=4964;RO=127;RPL=0;RPP=16.0391;RPPR=278.787;RPR=6;RUN=1;SAF=6;SAP=16.0391;SAR=0;SRF=127;SRP=278.787;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|0:106:58,7,40,1:58:2255:7,40,1:260,1458,41:-101.629,-97.814,-281.01,0,-164.029,-173.259,-115.703,-279.732,-181.916,-300.704 0|0:57:36,4,17,0:36:1425:4,17,0:154,625,0:-40.2467,-38.4357,-154.533,0,-104.648,-112.175,-51.0838,-155.737,-117.292,-168.382 0|0:79:33,12,28,5:33:1284:12,28,5:461,1018,199:-73.186,-45.2734,-147.182,0,-67.6698,-97.0823,-66.7312,-134.407,-89.1244,-170.746 dDocent_Contig_2629 17 . C A 37.5921 . AB=0.166667;ABP=20.3821;AC=1;AF=0.166667;AN=6;AO=3;CIGAR=1X;DP=69;DPB=69;DPRA=0.705882;EPP=9.52472;EPPR=146.327;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=1.73472e-18;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=118;QR=2591;RO=66;RPL=0;RPP=9.52472;RPPR=146.327;RPR=3;RUN=1;SAF=3;SAP=9.52472;SAR=0;SRF=66;SRP=146.327;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:34:34,0:34:1321:0:0:0,-10.235,-119.146 0/0:17:17,0:17:688:0:0:0,-5.11751,-62.2499 0/1:18:15,3:15:582:3:118:-5.58304,0,-47.2969 dDocent_Contig_2630 98 . N G 129.058 . AB=0;ABP=0;AC=6;AF=1;AN=6;AO=4;CIGAR=1X;DP=4;DPB=4;DPRA=0;EPP=11.6962;EPPR=0;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=0;NS=3;NUMALT=1;ODDS=0;PAIRED=0.25;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=126;QR=0;RO=0;RPL=4;RPP=11.6962;RPPR=0;RPR=0;RUN=1;SAF=4;SAP=11.6962;SAR=0;SRF=0;SRP=0;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 1/1:1:0,1:0:0:1:34:-3.39891,-0.30103,0 1/1:1:0,1:0:0:1:33:-3.29913,-0.30103,0 1/1:2:0,2:0:0:2:59:-5.60426,-0.60206,0 dDocent_Contig_2631 107 . N A 105.131 . AB=0;ABP=0;AC=4;AF=1;AN=4;AO=4;CIGAR=1X;DP=4;DPB=4;DPRA=0;EPP=11.6962;EPPR=0;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=0;NS=2;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=107;QR=0;RO=0;RPL=0;RPP=11.6962;RPPR=0;RPR=4;RUN=1;SAF=0;SAP=11.6962;SAR=4;SRF=0;SRP=0;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 1/1:3:0,3:0:0:3:73:-6.81167,-0.90309,0 1/1:1:0,1:0:0:1:34:-3.39891,-0.30103,0 ./.:.:.:.:.:.:.:. dDocent_Contig_2632 1 . N G 110.027 . AB=0;ABP=0;AC=2;AF=1;AN=2;AO=3;CIGAR=1X;DP=3;DPB=3;DPRA=0;EPP=9.52472;EPPR=0;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=0;NS=1;NUMALT=1;ODDS=6.68461;PAIRED=1;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=118;QR=0;RO=0;RPL=0;RPP=9.52472;RPPR=0;RPR=3;RUN=1;SAF=3;SAP=9.52472;SAR=0;SRF=0;SRP=0;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 1/1:3:0,3:0:0:3:118:-11.0022,-0.90309,0 ./.:.:.:.:.:.:.:. ./.:.:.:.:.:.:.:. dDocent_Contig_2633 39 . T C 5650.47 . AB=0.0612903;ABP=521.25;AC=3;AF=0.5;AN=6;AO=19;CIGAR=2X1M;DP=310;DPB=310;DPRA=0;EPP=44.2683;EPPR=120.27;GTI=0;LEN=1;MEANALT=3.66667;MQM=42.8421;MQMR=60;NS=3;NUMALT=4;ODDS=0;PAIRED=0.263158;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=676;QR=2108;RO=54;RPL=0;RPP=44.2683;RPPR=120.27;RPR=19;RUN=1;SAF=19;SAP=44.2683;SAR=0;SRF=54;SRP=120.27;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|1:184:38,3,102,7,34:38:1489:3,102,7,34:122,4057,258,1338:-322.598,-323.974,-445.504,0,-112.38,-91.7393,-313.757,-426.127,-102.165,-434.083,-232.637,-345.005,-21.0462,-334.789,-344.834 1|0:47:4,0,7,5,31:4:160:0,7,5,31:0,275,183,1189:-98.305,-99.5091,-112.692,-76.8861,-90.0707,-87.9635,-85.3673,-98.5509,-75.9288,-97.0458,-9.43983,-22.6264,0,-8.49764,-13.2945 0|1:79:12,4,47,7,9:12:459:4,47,7,9:162,1862,235,346:-149.667,-139.919,-176.367,0,-24.2986,-23.5146,-135.794,-160.084,-20.1834,-171.336,-127.051,-151.342,-11.4331,-147.216,-161.992 dDocent_Contig_2634 15 . G A 1104.53 . AB=0.238532;ABP=67.7361;AC=3;AF=0.5;AN=6;AO=26;CIGAR=1M1X1M;DP=109;DPB=113.667;DPRA=0;EPP=59.4686;EPPR=74.6689;GTI=0;LEN=1;MEANALT=4.33333;MQM=60;MQMR=60;NS=3;NUMALT=6;ODDS=2.77556e-17;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=1048;QR=1272;RO=33;RPL=0;RPP=59.4686;RPPR=74.6689;RPR=26;RUN=1;SAF=26;SAP=59.4686;SAR=0;SRF=33;SRP=74.6689;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|0:69:23,5,4,0,10,5,22:23:881:5,4,0,10,5,22:176,137,0,399,191,828:-58.6881,-51.8891,-122.677,-54.8584,-113.429,-125.948,-65.6118,-124.182,-127.152,-137.906,-32.7439,-91.3188,-94.2881,-105.042,-102.032,-49.9419,-108.514,-111.483,-122.237,-89.3729,-120.732,0,-58.5733,-61.5423,-72.295,-39.4297,-56.6262,-65.6723 1|1:5:0,0,0,2,2,0,1:0:0:0,0,2,2,0,1:0,0,81,81,0,38:-13.4109,-13.4109,-13.4109,-13.4109,-13.4109,-13.4109,-6.723,-6.723,-6.723,-6.12094,-6.723,-6.723,-6.723,0,-6.12094,-13.4109,-13.4109,-13.4109,-6.723,-6.723,-13.4109,-10.6763,-10.6763,-10.6763,-3.9971,-3.9971,-10.6763,-10.3752 0|1:35:10,0,3,2,14,2,4:10:391:0,3,2,14,2,4:0,63,75,568,81,149:-43.8765,-46.8868,-79.0367,-42.954,-75.0963,-74.1932,-40.7437,-72.8939,-68.9548,-72.2919,0,-32.1748,-28.2454,-26.0301,-27.9603,-40.2047,-72.3558,-68.4164,-66.213,-25.4906,-71.7537,-34.6912,-66.8419,-62.9041,-60.6992,-19.9758,-60.1608,-65.6377 dDocent_Contig_2635 67 . G A 115.572 . AB=0.3125;ABP=7.89611;AC=1;AF=0.166667;AN=6;AO=5;CIGAR=1X;DP=68;DPB=68;DPRA=0.615385;EPP=13.8677;EPPR=139.813;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=198;QR=2459;RO=63;RPL=5;RPP=13.8677;RPPR=139.813;RPR=0;RUN=1;SAF=5;SAP=13.8677;SAR=0;SRF=63;SRP=139.813;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:32:32,0:32:1232:0:0:0,-9.63296,-111.153 0/1:16:11,5:11:434:5:198:-13.3811,0,-34.599 0/0:20:20,0:20:793:0:0:0,-6.0206,-71.6866 dDocent_Contig_2636 32 . G C 763.966 . AB=0.139949;ABP=445.532;AC=3;AF=0.5;AN=6;AO=55;CIGAR=1X;DP=393;DPB=393;DPRA=0;EPP=122.441;EPPR=736.968;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=2214;QR=13484;RO=338;RPL=0;RPP=122.441;RPPR=736.968;RPR=55;RUN=1;SAF=55;SAP=122.441;SAR=0;SRF=338;SRP=736.968;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:210:177,33:177:7089:33:1334:-57.1025,0,-574.445 0/1:54:44,10:44:1749:10:393:-19.4684,0,-141.379 0/1:129:117,12:117:4646:12:487:-5.34859,0,-379.216 dDocent_Contig_2637 14 . G C 976.592 . AB=0.632653;ABP=10.4997;AC=1;AF=0.166667;AN=6;AO=31;CIGAR=1X;DP=74;DPB=74;DPRA=3.92;EPP=70.3259;EPPR=96.3836;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=1263;QR=1731;RO=43;RPL=0;RPP=70.3259;RPPR=96.3836;RPR=31;RUN=1;SAF=31;SAP=70.3259;SAR=0;SRF=43;SRP=96.3836;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:49:18,31:18:725:31:1263:-99.1821,0,-50.8233 0/0:12:12,0:12:480:0:0:0,-3.61236,-43.5488 0/0:13:13,0:13:526:0:0:0,-3.91339,-47.6859 dDocent_Contig_2638 8 . T A 33.14 . AB=0.210526;ABP=16.8392;AC=1;AF=0.166667;AN=6;AO=4;CIGAR=1X1M1X;DP=65;DPB=65;DPRA=0.826087;EPP=11.6962;EPPR=135.47;GTI=0;LEN=1;MEANALT=1;MQM=29;MQMR=59.5902;NS=3;NUMALT=1;ODDS=0;PAIRED=0;PAIREDR=0.885246;PAO=0;PQA=0;PQR=0;PRO=0;QA=154;QR=2336;RO=61;RPL=0;RPP=11.6962;RPPR=135.47;RPR=4;RUN=1;SAF=4;SAP=11.6962;SAR=0;SRF=61;SRP=135.47;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|1:19:15,4:15:572:4:154:-4.83667,0,-45.6097 0|0:16:16,0:16:614:0:0:0,-4.81648,-55.599 0|0:30:30,0:30:1150:0:0:0,-9.0309,-103.8 dDocent_Contig_2640 172 . G T 514.957 . AB=0.323529;ABP=21.4039;AC=3;AF=0.5;AN=6;AO=22;CIGAR=1X;DP=68;DPB=68;DPRA=0;EPP=50.7827;EPPR=102.898;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=849;QR=1812;RO=46;RPL=22;RPP=50.7827;RPPR=102.898;RPR=0;RUN=1;SAF=0;SAP=50.7827;SAR=22;SRF=0;SRP=102.898;SRR=46;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:31:19,12:19:751:12:467:-33.0446,0,-58.5741 0/1:13:9,4:9:339:4:157:-10.5952,0,-26.944 0/1:24:18,6:18:722:6:225:-13.3788,0,-58.079 dDocent_Contig_2641 38 . T C 1028.42 . AB=0.0434783;ABP=127.917;AC=3;AF=0.5;AN=6;AO=3;CIGAR=1X4M;DP=97;DPB=97;DPRA=0;EPP=9.52472;EPPR=118.098;GTI=0;LEN=1;MEANALT=2;MQM=60;MQMR=60;NS=3;NUMALT=3;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=112;QR=2009;RO=53;RPL=0;RPP=9.52472;RPPR=118.098;RPR=3;RUN=1;SAF=3;SAP=9.52472;SAR=0;SRF=53;SRP=118.098;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|1:30:21,0,8,1:21:813:0,8,1:0,317,41:-19.7592,-26.0808,-92.8552,0,-66.7602,-64.3519,-22.6952,-89.4704,-63.3751,-89.1694 0|1:28:14,2,12,0:14:540:2,12,0:77,458,0:-33.355,-31.2469,-74.9911,0,-38.0227,-40.7324,-37.5694,-75.5932,-44.3447,-81.9153 0|1:39:18,0,19,2:18:656:0,19,2:0,738,71:-55.2509,-60.6694,-114.236,0,-53.585,-47.8655,-54.8899,-108.455,-47.8033,-107.853 dDocent_Contig_2642 43 . G C 1016.17 . AB=0.372549;ABP=17.4016;AC=3;AF=0.5;AN=6;AO=38;CIGAR=1X;DP=102;DPB=102;DPRA=0;EPP=85.5263;EPPR=141.985;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=1520;QR=2484;RO=64;RPL=0;RPP=85.5263;RPPR=141.985;RPR=38;RUN=1;SAF=38;SAP=85.5263;SAR=0;SRF=64;SRP=141.985;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:32:19,13:19:748:13:523:-37.7842,0,-58.0054 0/1:43:29,14:29:1105:14:560:-37.7989,0,-86.7816 0/1:27:16,11:16:631:11:437:-31.5563,0,-48.9974 dDocent_Contig_2643 7 . C T 2485.27 . AB=0.0347826;ABP=435.379;AC=0;AF=0;AN=6;AO=8;CIGAR=1X3M2X;DP=304;DPB=304;DPRA=0;EPP=20.3821;EPPR=291.816;GTI=0;LEN=1;MEANALT=4;MQM=60;MQMR=60;NS=3;NUMALT=4;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=300;QR=5140;RO=133;RPL=0;RPP=20.3821;RPPR=291.816;RPR=8;RUN=1;SAF=8;SAP=20.3821;SAR=0;SRF=133;SRP=291.816;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|0:197:79,0,5,74,38:79:3038:0,5,74,38:0,191,2474,1486:-172.235,-196.016,-445.44,-180.344,-429.769,-428.264,0,-249.413,-233.742,-227.137,-75.9084,-325.345,-309.674,-129.322,-313.906 0|0:33:10,3,3,13,4:10:392:3,3,13,4:117,109,497,159:-37.7655,-31.1572,-62.4944,-31.8781,-54.4992,-63.2139,0,-22.6229,-23.3445,-28.3275,-27.7416,-50.3643,-51.0843,-19.2074,-58.7785 0|0:74:44,0,0,12,18:44:1710:0,0,12,18:0,0,423,712:-44.0496,-57.2949,-197.822,-57.2949,-197.822,-197.822,-23.4308,-163.949,-163.949,-160.337,0,-140.55,-140.55,-106.678,-135.131 dDocent_Contig_2644 22 . G C 341.784 . AB=0.142105;ABP=214.397;AC=1;AF=0.166667;AN=6;AO=27;CIGAR=1X;DP=333;DPB=333;DPRA=2.65734;EPP=61.6401;EPPR=667.481;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=0.888889;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=1029;QR=12013;RO=306;RPL=0;RPP=61.6401;RPPR=667.481;RPR=27;RUN=1;SAF=27;SAP=61.6401;SAR=0;SRF=306;SRP=667.481;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:190:163,27:163:6375:27:1029:-35.7012,0,-516.341 0/0:38:38,0:38:1495:0:0:0,-11.4391,-134.806 0/0:105:105,0:105:4143:0:0:0,-31.6081,-372.859 dDocent_Contig_2646 13 . A G 3669.5 . AB=0.533333;ABP=3.15506;AC=5;AF=0.833333;AN=6;AO=114;CIGAR=1X1M1X;DP=130;DPB=130;DPRA=0;EPP=250.558;EPPR=37.7539;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=0;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=4489;QR=624;RO=16;RPL=0;RPP=250.558;RPPR=37.7539;RPR=114;RUN=1;SAF=114;SAP=250.558;SAR=0;SRF=16;SRP=37.7539;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 1|1:67:5,62:5:200:62:2423:-199.86,-1.78909,0 0|1:15:7,8:7:279:8:313:-24.0182,0,-20.9651 1|1:48:4,44:4:145:44:1753:-144.594,-1.04817,0 dDocent_Contig_2648 11 . A C 45.2324 . AB=0.118644;ABP=77.5396;AC=2;AF=0.333333;AN=6;AO=7;CIGAR=1X;DP=92;DPB=92;DPRA=0.893939;EPP=18.2106;EPPR=187.585;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=277;QR=3412;RO=85;RPL=0;RPP=18.2106;RPPR=187.585;RPR=7;RUN=1;SAF=7;SAP=18.2106;SAR=0;SRF=85;SRP=187.585;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:42:38,4:38:1528:4:159:-2.04757,0,-125.115 0/1:17:14,3:14:541:3:118:-5.885,0,-43.9021 0/0:33:33,0:33:1343:0:0:0,-9.93399,-121.124 dDocent_Contig_2649 21 . C A 2097.11 . AB=0.383838;ABP=26.2165;AC=3;AF=0.5;AN=6;AO=76;CIGAR=1X;DP=198;DPB=198;DPRA=0;EPP=168.042;EPPR=265.758;GTI=0;LEN=1;MEANALT=1.33333;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=3042;QR=4845;RO=121;RPL=0;RPP=168.042;RPPR=265.758;RPR=76;RUN=1;SAF=76;SAP=168.042;SAR=0;SRF=121;SRP=265.758;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:125:79,46:79:3158:46:1845:-128.63,0,-246.665 0/1:29:11,17:11:448:17:682:-53.1557,0,-32.1122 0/1:44:31,13:31:1239:13:515:-33.449,0,-98.5332 dDocent_Contig_2650 5 . T C 213.603 . AB=0;ABP=0;AC=4;AF=1;AN=4;AO=7;CIGAR=1X12I3M1X1M1X;DP=7;DPB=109.571;DPRA=0;EPP=18.2106;EPPR=0;GTI=0;LEN=1;MEANALT=1;MQM=36;MQMR=0;NS=2;NUMALT=1;ODDS=0;PAIRED=0;PAIREDR=0;PAO=556;PQA=21296;PQR=0;PRO=0;QA=259;QR=0;RO=0;RPL=0;RPP=18.2106;RPPR=0;RPR=7;RUN=1;SAF=7;SAP=18.2106;SAR=0;SRF=0;SRP=0;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 1|1:2:0,2:0:0:2:75:-6.06013,-0.60206,0 .:.:.:.:.:.:.:. 1|1:5:0,5:0:0:5:184:-14.9986,-1.50515,0 dDocent_Contig_2651 21 . C T 33.9218 . AB=0.121212;ABP=44.1367;AC=1;AF=0.166667;AN=6;AO=9;CIGAR=9M1X1M;DP=280;DPB=276.727;DPRA=0;EPP=22.5536;EPPR=571.936;GTI=0;LEN=1;MEANALT=2.33333;MQM=60;MQMR=60;NS=3;NUMALT=2;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=362;QR=10348;RO=262;RPL=0;RPP=22.5536;RPPR=571.936;RPR=9;RUN=1;SAF=9;SAP=22.5536;SAR=0;SRF=262;SRP=571.936;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|0:168:162,0,1:162:6411:0,1:0,38:0,-48.7669,-576.436,-45.644,-573.32,-573.019 0|1:33:29,0,4:29:1143:0,4:0,164:-5.21591,-13.9458,-107.966,0,-94.4282,-93.2241 0|0:79:71,4,4:71:2794:4,4:155,160:0,-8.64517,-237.265,-8.18769,-225.29,-236.82 dDocent_Contig_2652 20 . A G 2150.42 . AB=0.195122;ABP=36.112;AC=0;AF=0;AN=6;AO=8;CIGAR=1X1M1X1M3X2M1X2M;DP=148;DPB=148;DPRA=0;EPP=20.3821;EPPR=111.584;GTI=0;LEN=1;MEANALT=4;MQM=60;MQMR=60;NS=3;NUMALT=3;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=312;QR=1938;RO=50;RPL=0;RPP=20.3821;RPPR=111.584;RPR=8;RUN=1;SAF=8;SAP=20.3821;SAR=0;SRF=50;SRP=111.584;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|0:64:23,0,9,32:23:876:0,9,32:0,341,1210:-92.2551,-99.1788,-171.028,-71.221,-143.07,-140.361,0,-71.8494,-43.8924,-62.2165 0|0:41:11,8,2,19:11:433:8,2,19:312,80,708:-54.6321,-32.2931,-65.515,-51.3514,-61.3315,-86.3769,0,-9.98309,-29.0388,-29.911 0|0:43:16,0,0,26:16:629:0,0,26:0,0,960:-73.6775,-78.494,-130.242,-78.494,-130.242,-130.242,0,-51.7518,-51.7518,-43.9251 dDocent_Contig_2653 21 . A G 679.023 . AB=0.125786;ABP=583.203;AC=2;AF=0.333333;AN=6;AO=80;CIGAR=1X;DP=748;DPB=748;DPRA=0;EPP=176.728;EPPR=1453.55;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=0.994012;PAO=0;PQA=0;PQR=0;PRO=0;QA=3182;QR=26742;RO=668;RPL=0;RPP=176.728;RPPR=1453.55;RPR=80;RUN=1;SAF=80;SAP=176.728;SAR=0;SRF=668;SRP=1453.55;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:370:324,46:324:13037:46:1833:-53.7971,0,-1060.95 0/1:107:93,14:93:3666:14:550:-17.6281,0,-297.758 0/0:271:251,20:251:10039:20:799:0,-9.35153,-830.627 dDocent_Contig_2654 57 . A G 858.254 . AB=0.163009;ABP=317.67;AC=3;AF=0.5;AN=6;AO=52;CIGAR=1X;DP=319;DPB=319;DPRA=0;EPP=115.927;EPPR=582.793;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=2071;QR=10575;RO=267;RPL=52;RPP=115.927;RPPR=582.793;RPR=0;RUN=1;SAF=52;SAP=115.927;SAR=0;SRF=267;SRP=582.793;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:153:124,29:124:4862:29:1158:-58.4436,0,-391.428 0/1:67:58,9:58:2311:9:355:-12.1424,0,-187.983 0/1:99:85,14:85:3402:14:558:-20.7623,0,-276.43 dDocent_Contig_2655 63 . G A 213.786 . AB=0.27027;ABP=19.9713;AC=2;AF=0.333333;AN=6;AO=11;CIGAR=1X;DP=52;DPB=52;DPRA=0;EPP=26.8965;EPPR=92.0407;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=59.4878;NS=3;NUMALT=1;ODDS=0;PAIRED=0;PAIREDR=0.902439;PAO=0;PQA=0;PQR=0;PRO=0;QA=430;QR=1646;RO=41;RPL=11;RPP=26.8965;RPPR=92.0407;RPR=0;RUN=1;SAF=11;SAP=26.8965;SAR=0;SRF=41;SRP=92.0407;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:15:14,1:14:556:1:38:0,-0.718181,-46.5855 0/1:10:8,2:8:319:2:82:-4.76938,0,-25.935 0/1:27:19,8:19:771:8:310:-20.1316,0,-61.5811 dDocent_Contig_2656 71 . A C 69.3595 . AB=0.181818;ABP=32.0291;AC=1;AF=0.166667;AN=6;AO=14;CIGAR=1X;DP=221;DPB=221;DPRA=0;EPP=33.4109;EPPR=452.505;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=476;QR=6857;RO=207;RPL=14;RPP=33.4109;RPPR=452.505;RPR=0;RUN=1;SAF=14;SAP=33.4109;SAR=0;SRF=207;SRP=452.505;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:122:119,3:119:3972:3:101:0,-27.3021,-348.279 0/0:66:61,5:61:2012:5:171:0,-4.14153,-165.628 0/1:33:27,6:27:873:6:204:-8.75986,0,-68.9378 dDocent_Contig_2658 8 . A T 2080.55 . AB=0.514085;ABP=3.25497;AC=3;AF=0.5;AN=6;AO=73;CIGAR=1X2M1X;DP=142;DPB=142;DPRA=0;EPP=161.528;EPPR=135.47;GTI=0;LEN=1;MEANALT=2.66667;MQM=60;MQMR=60;NS=3;NUMALT=2;ODDS=0;PAIRED=1;PAIREDR=0.967213;PAO=0;PQA=0;PQR=0;PRO=0;QA=2824;QR=2376;RO=61;RPL=0;RPP=161.528;RPPR=135.47;RPR=73;RUN=1;SAF=73;SAP=161.528;SAR=0;SRF=61;SRP=135.47;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|1:74:31,41,0:31:1210:41,0:1591,0:-121.401,0,-87.1399,-130.733,-99.4821,-230.202 0|1:24:6,16,2:6:233:16,2:616,81:-48.7528,0,-14.3167,-43.8776,-12.4499,-62.422 0|1:44:24,16,3:24:933:16,3:617,123:-43.4244,0,-71.8404,-40.4933,-66.5024,-116.263 dDocent_Contig_2660 7 . C A 37.1752 . AB=0.0810811;ABP=59.4099;AC=2;AF=0.333334;AN=6;AO=3;CIGAR=1X3M1X3M3I1X5M1X6M;DP=196;DPB=181.857;DPRA=0.300813;EPP=9.52472;EPPR=224.5;GTI=0;LEN=1;MEANALT=6;MQM=38;MQMR=60;NS=3;NUMALT=3;ODDS=0;PAIRED=0;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=107;QR=4007;RO=102;RPL=0;RPP=9.52472;RPPR=224.5;RPR=3;RUN=1;SAF=3;SAP=9.52472;SAR=0;SRF=102;SRP=224.5;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|0:123:68,5,0,0:68:2683:5,0,0:155,0,0:0,-9.38249,-228.68,-20.47,-230.185,-241.273,-20.47,-230.185,-241.273,-241.273 0|1:37:17,0,0,3:17:660:0,0,3:0,0,107:-2.99939,-8.1169,-62.3762,-8.1169,-62.3762,-62.3762,0,-54.2634,-54.2634,-53.3603 0|1:36:17,1,3,0:17:664:1,3,0:31,114,0:-4.22583,-7.12662,-61.4439,0,-52.409,-53.7223,-9.34334,-61.745,-54.6254,-63.9615 dDocent_Contig_2661 125 . A T 681.968 . AB=0.5;ABP=3.0103;AC=3;AF=0.5;AN=6;AO=28;CIGAR=1X;DP=56;DPB=56;DPRA=0;EPP=63.8115;EPPR=63.8115;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=995;QR=971;RO=28;RPL=0;RPP=63.8115;RPPR=63.8115;RPR=28;RUN=1;SAF=0;SAP=63.8115;SAR=28;SRF=0;SRP=63.8115;SRR=28;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:17:10,7:10:341:7:246:-17.3645,0,-25.9012 0/1:10:7,3:7:244:3:108:-7.06487,0,-19.2888 0/1:29:11,18:11:386:18:641:-49.2904,0,-26.346 dDocent_Contig_2663 107 . N A 66.4848 . AB=0;ABP=0;AC=2;AF=1;AN=2;AO=2;CIGAR=1X;DP=2;DPB=2;DPRA=0;EPP=7.35324;EPPR=0;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=0;NS=1;NUMALT=1;ODDS=5.99146;PAIRED=1;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=70;QR=0;RO=0;RPL=0;RPP=7.35324;RPPR=0;RPR=2;RUN=1;SAF=0;SAP=7.35324;SAR=2;SRF=0;SRP=0;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 1/1:2:0,2:0:0:2:70:-6.6474,-0.60206,0 ./.:.:.:.:.:.:.:. ./.:.:.:.:.:.:.:. dDocent_Contig_2664 12 . T C 371.781 . AB=0.156463;ABP=153.699;AC=2;AF=0.333333;AN=6;AO=23;CIGAR=1X;DP=163;DPB=163;DPRA=4.59375;EPP=52.9542;EPPR=304.845;GTI=0;LEN=1;MEANALT=1.5;MQM=60;MQMR=59.8129;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=0.992806;PAO=0;PQA=0;PQR=0;PRO=0;QA=936;QR=5581;RO=139;RPL=0;RPP=52.9542;RPPR=304.845;RPR=23;RUN=1;SAF=23;SAP=52.9542;SAR=0;SRF=139;SRP=304.845;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:116:95,20:95:3841:20:814:-38.5453,0,-309.95 0/0:16:16,0:16:640:0:0:0,-4.81648,-57.9346 0/1:31:28,3:28:1100:3:122:-2.04056,0,-89.952 dDocent_Contig_2665 34 . C G 2070.04 . AB=0.584746;ABP=10.3712;AC=3;AF=0.5;AN=6;AO=69;CIGAR=1X;DP=118;DPB=118;DPRA=0;EPP=152.842;EPPR=109.412;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=2746;QR=1971;RO=49;RPL=0;RPP=152.842;RPPR=109.412;RPR=69;RUN=1;SAF=69;SAP=152.842;SAR=0;SRF=49;SRP=109.412;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:67:28,39:28:1124:39:1554:-119.926,0,-81.2715 0/1:28:12,16:12:483:16:637:-49.2355,0,-35.3922 0/1:23:9,14:9:364:14:555:-43.3654,0,-26.2007 dDocent_Contig_2668 19 . T C 656.293 . AB=0.325;ABP=24.2907;AC=3;AF=0.5;AN=6;AO=26;CIGAR=1X;DP=80;DPB=80;DPRA=0;EPP=59.4686;EPPR=120.27;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=1046;QR=1988;RO=54;RPL=0;RPP=59.4686;RPPR=120.27;RPR=26;RUN=1;SAF=26;SAP=59.4686;SAR=0;SRF=54;SRP=120.27;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:43:33,10:33:1203:10:404:-23.7758,0,-95.6155 0/1:18:10,8:10:373:8:316:-23.3861,0,-28.5009 0/1:19:11,8:11:412:8:326:-23.9903,0,-31.706 dDocent_Contig_2669 86 . G A 3984.28 . AB=0.573529;ABP=15.7837;AC=3;AF=0.5;AN=6;AO=156;CIGAR=13M1X4M;DP=272;DPB=273.278;DPRA=0;EPP=341.76;EPPR=122.441;GTI=0;LEN=1;MEANALT=8;MQM=60;MQMR=60;NS=3;NUMALT=4;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=5194;QR=1850;RO=55;RPL=156;RPP=341.76;RPPR=122.441;RPR=0;RUN=1;SAF=156;SAP=341.76;SAR=0;SRF=55;SRP=122.441;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|1:130:29,11,5,12,63:29:994:11,5,12,63:358,167,414,2129:-163.88,-143.709,-221.102,-159.089,-210.893,-238.287,-138.973,-190.778,-206.157,-216.065,0,-51.8179,-67.1983,-47.0799,-61.7546 0|1:50:10,0,0,2,37:10:338:0,0,2,37:0,0,60,1216:-95.3617,-98.372,-125.775,-98.372,-125.775,-125.775,-93.5762,-120.979,-120.979,-120.377,0,-27.4929,-27.4929,-22.6979,-16.3548 0|1:92:16,1,11,3,56:16:518:1,11,3,56:35,366,103,1849:-144.71,-146.678,-188.169,-119.905,-158.849,-158.386,-141.162,-180.105,-153.332,-182.05,0,-38.9555,-12.1738,-33.4375,-24.9468 dDocent_Contig_2670 30 . T A 2176.47 . AB=0.584;ABP=10.6713;AC=3;AF=0.5;AN=6;AO=73;CIGAR=1X8M;DP=125;DPB=125;DPRA=0;EPP=161.528;EPPR=111.584;GTI=0;LEN=1;MEANALT=1.33333;MQM=60;MQMR=60;NS=3;NUMALT=2;ODDS=6.93889e-18;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=2883;QR=1920;RO=50;RPL=0;RPP=161.528;RPPR=111.584;RPR=73;RUN=1;SAF=73;SAP=161.528;SAR=0;SRF=50;SRP=111.584;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|1:46:16,0,30:16:626:0,30:0,1184:-92.9911,-97.8076,-149.278,0,-51.8622,-42.8313 0|1:49:29,0,20:29:1103:0,20:0,791:-56.7572,-65.4871,-155.938,0,-90.8403,-84.8197 0|1:30:5,2,23:5:191:2,23:79,908:-73.4218,-72.8512,-87.918,0,-13.8077,-8.91302 dDocent_Contig_2672 29 . C A 3837.5 . AB=0.494382;ABP=3.0835;AC=3;AF=0.5;AN=6;AO=132;CIGAR=1X;DP=267;DPB=267;DPRA=0;EPP=289.645;EPPR=296.159;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=59.7852;NS=3;NUMALT=1;ODDS=1.38778e-17;PAIRED=1;PAIREDR=0.992593;PAO=0;PQA=0;PQR=0;PRO=0;QA=5211;QR=5374;RO=135;RPL=0;RPP=289.645;RPPR=296.159;RPR=132;RUN=1;SAF=132;SAP=289.645;SAR=0;SRF=135;SRP=296.159;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:150:72,78:72:2859:78:3089:-232.935,0,-212.205 0/1:50:29,21:29:1160:21:810:-58.1601,0,-89.6273 0/1:67:34,33:34:1355:33:1312:-98.178,0,-101.766 dDocent_Contig_2673 118 . G T 111.631 . AB=0.138298;ABP=109.828;AC=1;AF=0.166667;AN=6;AO=13;CIGAR=1X;DP=223;DPB=223;DPRA=1.45736;EPP=31.2394;EPPR=459.02;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=455;QR=7153;RO=210;RPL=0;RPP=31.2394;RPPR=459.02;RPR=13;RUN=1;SAF=0;SAP=31.2394;SAR=13;SRF=0;SRP=459.02;SRR=210;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:93:93,0:93:3168:0:0:0,-27.9958,-285.357 0/0:36:36,0:36:1199:0:0:0,-10.8371,-108.205 0/1:94:81,13:81:2786:13:455:-12.987,0,-222.695 dDocent_Contig_2674 13 . G A 487.994 . AB=0.0858086;ABP=454.512;AC=0;AF=0;AN=6;AO=26;CIGAR=2X;DP=303;DPB=303;DPRA=0;EPP=59.4686;EPPR=508.963;GTI=0;LEN=1;MEANALT=3;MQM=60;MQMR=60;NS=3;NUMALT=2;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=1042;QR=9206;RO=233;RPL=0;RPP=59.4686;RPPR=508.963;RPR=26;RUN=1;SAF=26;SAP=59.4686;SAR=0;SRF=233;SRP=508.963;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|0:142:104,14,22:104:4113:14,22:562,886:-41.6957,-26.6948,-360.944,0,-292.157,-331.842 0|0:56:45,5,6:45:1768:5,6:201,234:-5.67831,-2.65502,-146.566,0,-128.84,-143.599 0|0:105:84,7,10:84:3325:7,10:279,392:-6.94791,-9.25713,-280.801,0,-250.674,-270.638 dDocent_Contig_2675 16 . G A 90.2156 . AB=0.112245;ABP=130.994;AC=1;AF=0.166667;AN=6;AO=12;CIGAR=1X;DP=137;DPB=137;DPRA=2.35417;EPP=29.068;EPPR=274.444;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=0.976;PAO=0;PQA=0;PQR=0;PRO=0;QA=482;QR=4998;RO=125;RPL=0;RPP=29.068;RPPR=274.444;RPR=12;RUN=1;SAF=12;SAP=29.068;SAR=0;SRF=125;SRP=274.444;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:98:87,11:87:3491:11:441:-10.5439,0,-284.714 0/0:15:14,1:14:557:1:41:0,-0.420883,-46.3784 0/0:24:24,0:24:950:0:0:0,-7.22472,-85.7907 dDocent_Contig_2676 19 . A T 116.287 . AB=0.0960452;ABP=253.883;AC=2;AF=0.333333;AN=6;AO=22;CIGAR=1X2M1X2M;DP=251;DPB=251;DPRA=0;EPP=50.7827;EPPR=450.334;GTI=0;LEN=1;MEANALT=2.66667;MQM=60;MQMR=60;NS=3;NUMALT=2;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=890;QR=8199;RO=206;RPL=0;RPP=50.7827;RPPR=450.334;RPR=22;RUN=1;SAF=22;SAP=50.7827;SAR=0;SRF=206;SRP=450.334;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|1:147:113,14,12:113:4499:14,12:566,479:-12.6552,0,-366.243,-7.21934,-331.007,-374.061 0|1:30:25,3,2:25:991:3,2:121,81:-2.4475,0,-80.66,-3.29343,-74.8833,-84.2562 0|0:74:68,5,1:68:2709:5,1:203,40:0,-3.72269,-225.292,-17.1759,-223.502,-239.944 dDocent_Contig_2677 1 . N G 294.386 . AB=0;ABP=0;AC=2;AF=1;AN=2;AO=8;CIGAR=1X;DP=8;DPB=8;DPRA=0;EPP=20.3821;EPPR=0;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=0;NS=1;NUMALT=1;ODDS=10.1503;PAIRED=0.875;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=323;QR=0;RO=0;RPL=0;RPP=20.3821;RPPR=0;RPR=8;RUN=1;SAF=8;SAP=20.3821;SAR=0;SRF=0;SRP=0;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL ./.:.:.:.:.:.:.:. ./.:.:.:.:.:.:.:. 1/1:8:0,8:0:0:8:323:-29.4386,-2.40824,0 dDocent_Contig_2678 19 . T G 13786.1 . AB=0.83463;ABP=502.939;AC=3;AF=0.5;AN=6;AO=429;CIGAR=1X;DP=514;DPB=514;DPRA=0;EPP=934.572;EPPR=187.585;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=17105;QR=3406;RO=85;RPL=0;RPP=934.572;RPPR=187.585;RPR=429;RUN=1;SAF=429;SAP=934.572;SAR=0;SRF=85;SRP=187.585;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:279:36,243:36:1449:243:9683:-786.873,0,-46.6684 0/1:105:17,88:17:672:88:3494:-282.89,0,-29.2035 0/1:130:32,98:32:1285:98:3928:-314.375,0,-76.7772 dDocent_Contig_2679 15 . G C 247.658 . AB=0.314286;ABP=13.4954;AC=2;AF=0.333333;AN=6;AO=15;CIGAR=1M6D2M1X1M1X;DP=92;DPB=84.5;DPRA=0;EPP=35.5824;EPPR=170.214;GTI=0;LEN=1;MEANALT=1;MQM=52;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=0;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=579;QR=2980;RO=77;RPL=0;RPP=35.5824;RPPR=170.214;RPR=15;RUN=1;SAF=15;SAP=35.5824;SAR=0;SRF=77;SRP=170.214;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|0:57:53,4:53:2044:4:154:0,-2.98436,-170.011 0|1:12:8,4:8:310:4:156:-10.7391,0,-24.6507 0|1:23:16,7:16:626:7:269:-17.5496,0,-49.7535 dDocent_Contig_2680 107 . N A 483.865 . AB=0.642857;ABP=5.49198;AC=6;AF=1;AN=6;AO=9;CIGAR=1X3M;DP=19;DPB=19;DPRA=1.4;EPP=22.5536;EPPR=0;GTI=0;LEN=1;MEANALT=2;MQM=60;MQMR=0;NS=3;NUMALT=2;ODDS=1.73472e-18;PAIRED=1;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=299;QR=0;RO=0;RPL=0;RPP=22.5536;RPPR=0;RPR=9;RUN=1;SAF=0;SAP=22.5536;SAR=9;SRF=0;SRP=0;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 1|1:5:0,5,0:0:0:5,0:157,0:-14.4404,-1.50515,0,-14.4404,-1.50515,-14.4404 1|1:6:0,2,4:0:0:2,4:66,137:-16.7963,-11.4641,-10.862,-5.66625,0,-4.46213 1|1:8:0,3,5:0:0:3,5:91,162:-20.6721,-13.3952,-12.4921,-7.58788,0,-6.08273 dDocent_Contig_2681 40 . C T 67.5435 . AB=0.25;ABP=11.6962;AC=2;AF=0.333333;AN=6;AO=4;CIGAR=1X;DP=26;DPB=26;DPRA=0.8;EPP=11.6962;EPPR=50.7827;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=160;QR=862;RO=22;RPL=0;RPP=11.6962;RPPR=50.7827;RPR=4;RUN=1;SAF=4;SAP=11.6962;SAR=0;SRF=22;SRP=50.7827;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:7:6,1:6:232:1:40:-1.88847,0,-19.1395 0/0:10:10,0:10:392:0:0:0,-3.0103,-35.6381 0/1:9:6,3:6:238:3:120:-8.47863,0,-19.0849 dDocent_Contig_2682 23 . C T 119.898 . AB=0.147727;ABP=97.8642;AC=2;AF=0.333333;AN=6;AO=13;CIGAR=1X;DP=125;DPB=125;DPRA=1.18919;EPP=31.2394;EPPR=246.215;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=459;QR=4437;RO=112;RPL=0;RPP=31.2394;RPPR=246.215;RPR=13;RUN=1;SAF=13;SAP=31.2394;SAR=0;SRF=112;SRP=246.215;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:58:49,9:49:1936:9:301:-9.94322,0,-156.98 0/0:37:37,0:37:1463:0:0:0,-11.1381,-131.922 0/1:30:26,4:26:1038:4:158:-5.56937,0,-84.6788 dDocent_Contig_2683 17 . A G 134.907 . AB=0.225806;ABP=23.254;AC=2;AF=0.333333;AN=6;AO=9;CIGAR=1X;DP=62;DPB=62;DPRA=0;EPP=22.5536;EPPR=118.098;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=365;QR=2121;RO=53;RPL=0;RPP=22.5536;RPPR=118.098;RPR=9;RUN=1;SAF=9;SAP=22.5536;SAR=0;SRF=53;SRP=118.098;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:31:29,2:29:1165:2:81:0,-1.6462,-97.4396 0/1:14:12,2:12:483:2:82:-3.56526,0,-39.6061 0/1:17:12,5:12:473:5:202:-13.4444,0,-37.8 dDocent_Contig_2684 8 . C T 972.405 . AB=0.258065;ABP=81.8137;AC=3;AF=0.5;AN=6;AO=40;CIGAR=2X3M1X;DP=155;DPB=155;DPRA=0;EPP=89.8692;EPPR=191.928;GTI=0;LEN=1;MEANALT=3;MQM=60;MQMR=60;NS=3;NUMALT=3;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=1568;QR=3400;RO=87;RPL=0;RPP=89.8692;RPPR=191.928;RPR=40;RUN=1;SAF=40;SAP=89.8692;SAR=0;SRF=87;SRP=191.928;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|1:86:44,24,16,1:44:1721:24,16,1:936,617,39:-63.6923,0,-134.276,-26.2716,-90.8343,-162.953,-73.7317,-138.295,-164.564,-214.929 0|1:31:22,8,1,0:22:852:8,1,0:314,39,0:-19.2043,0,-67.5774,-22.6214,-66.7796,-92.3048,-25.827,-69.9856,-92.6058,-95.8117 0|1:38:21,8,6,3:21:827:8,6,3:318,231,115:-19.8667,0,-65.634,-7.22432,-49.0767,-73.454,-16.7511,-58.6044,-65.8225,-83.8848 dDocent_Contig_2685 8 . T A 7151.03 . AB=0.610553;ABP=45.2613;AC=3;AF=0.5;AN=6;AO=243;CIGAR=1X;DP=398;DPB=398;DPRA=0;EPP=530.678;EPPR=339.589;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=9333;QR=5930;RO=155;RPL=0;RPP=530.678;RPPR=339.589;RPR=243;RUN=1;SAF=243;SAP=530.678;SAR=0;SRF=155;SRP=339.589;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:194:67,127:67:2585:127:4897:-382.351,0,-174.442 0/1:70:28,42:28:1043:42:1610:-124.095,0,-73.1011 0/1:134:60,74:60:2302:74:2826:-214.179,0,-167.056 dDocent_Contig_2686 16 . G C 66.6118 . AB=0.139535;ABP=51.5402;AC=1;AF=0.166667;AN=6;AO=13;CIGAR=1X;DP=261;DPB=261;DPRA=0;EPP=31.2394;EPPR=532.885;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=0.995968;PAO=0;PQA=0;PQR=0;PRO=0;QA=511;QR=9778;RO=248;RPL=0;RPP=31.2394;RPPR=541.535;RPR=13;RUN=1;SAF=13;SAP=31.2394;SAR=0;SRF=247;SRP=532.885;SRR=1;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:138:133,5:133:5260:5:197:0,-23.4366,-455.16 0/1:43:37,6:37:1442:6:234:-8.48509,0,-117.072 0/0:80:78,2:78:3076:2:80:0,-16.4906,-269.32 dDocent_Contig_2687 107 . N T 213.043 . AB=0;ABP=0;AC=4;AF=1;AN=4;AO=7;CIGAR=1X;DP=7;DPB=7;DPRA=0;EPP=18.2106;EPPR=0;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=0;NS=2;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=226;QR=0;RO=0;RPL=0;RPP=18.2106;RPPR=0;RPR=7;RUN=1;SAF=0;SAP=18.2106;SAR=7;SRF=0;SRP=0;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL ./.:.:.:.:.:.:.:. 1/1:6:0,6:0:0:6:191:-17.5035,-1.80618,0 1/1:1:0,1:0:0:1:35:-3.49863,-0.30103,0 dDocent_Contig_2691 11 . G A 16709.6 . AB=0.815172;ABP=628.541;AC=3;AF=0.5;AN=6;AO=591;CIGAR=1X;DP=725;DPB=725;DPRA=0;EPP=1217.8;EPPR=293.988;GTI=0;LEN=1;MEANALT=1;MQM=44.0948;MQMR=44.1567;NS=3;NUMALT=1;ODDS=0;PAIRED=0.265651;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=23299;QR=5264;RO=134;RPL=0;RPP=1286.35;RPPR=293.988;RPR=591;RUN=1;SAF=583;SAP=1217.8;SAR=8;SRF=134;SRP=293.988;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:283:51,232:51:1983:232:9191:-636.583,0,-87.1279 0/1:219:41,178:41:1615:178:6997:-525.639,0,-74.0651 0/1:223:42,181:42:1666:181:7111:-514.257,0,-76.8047 dDocent_Contig_2695 107 . N G 599.82 . AB=0.333333;ABP=5.18177;AC=6;AF=1;AN=6;AO=3;CIGAR=2X;DP=23;DPB=24;DPRA=1.28571;EPP=9.52472;EPPR=0;GTI=0;LEN=1;MEANALT=2;MQM=44;MQMR=0;NS=3;NUMALT=2;ODDS=0;PAIRED=1;PAIREDR=0;PAO=1;PQA=33;PQR=0;PRO=0;QA=100;QR=0;RO=0;RPL=0;RPP=9.52472;RPPR=0;RPR=3;RUN=1;SAF=0;SAP=9.52472;SAR=3;SRF=0;SRP=0;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 1|1:9:0,6,3:0:0:6,3:207,100:-24.6819,-8.23813,-6.43195,-16.7026,0,-15.7995 1|1:6:0,6,0:0:0:6,0:190,0:-17.4014,-1.80618,0,-17.4014,-1.80618,-17.4014 1|1:8:0,8,0:0:0:8,0:213,0:-19.4216,-2.40824,0,-19.4216,-2.40824,-19.4216 dDocent_Contig_2698 79 . C T 34.771 . AB=0.142857;ABP=49.5419;AC=2;AF=0.333333;AN=6;AO=6;CIGAR=1X;DP=61;DPB=61;DPRA=1.10526;EPP=16.0391;EPPR=122.441;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=210;QR=1854;RO=55;RPL=6;RPP=16.0391;RPPR=122.441;RPR=0;RUN=1;SAF=6;SAP=16.0391;SAR=0;SRF=55;SRP=122.441;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:28:24,4:24:815:4:140:-4.51609,0,-65.2361 0/0:19:19,0:19:629:0:0:0,-5.71957,-56.9221 0/1:14:12,2:12:410:2:70:-2.43298,0,-33.014 dDocent_Contig_2701 25 . C T 60.1977 . AB=0.142857;ABP=41.7866;AC=1;AF=0.166667;AN=6;AO=7;CIGAR=1X;DP=71;DPB=71;DPRA=0;EPP=18.2106;EPPR=141.985;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=3.46945e-18;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=278;QR=2579;RO=64;RPL=0;RPP=18.2106;RPPR=141.985;RPR=7;RUN=1;SAF=7;SAP=18.2106;SAR=0;SRF=64;SRP=141.985;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:16:15,1:15:604:1:39:0,-0.919915,-50.8011 0/1:35:30,5:30:1206:5:200:-7.84349,0,-98.2741 0/0:20:19,1:19:769:1:39:0,-2.12404,-65.6317 dDocent_Contig_2702 24 . T C 3660.07 . AB=0.420712;ABP=19.8831;AC=3;AF=0.5;AN=6;AO=130;CIGAR=1X;DP=309;DPB=309;DPRA=0;EPP=285.302;EPPR=391.704;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=0.888268;PAO=0;PQA=0;PQR=0;PRO=0;QA=5154;QR=7070;RO=179;RPL=0;RPP=285.302;RPPR=391.704;RPR=130;RUN=1;SAF=130;SAP=285.302;SAR=0;SRF=179;SRP=391.704;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:154:85,69:85:3320:69:2750:-201.268,0,-252.513 0/1:53:33,20:33:1318:20:784:-54.9275,0,-102.933 0/1:102:61,41:61:2432:41:1620:-115.335,0,-188.333 dDocent_Contig_2703 12 . C A 422.912 . AB=0.184615;ABP=115.326;AC=3;AF=0.5;AN=6;AO=24;CIGAR=1X;DP=130;DPB=130;DPRA=0;EPP=55.1256;EPPR=233.186;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=954;QR=4277;RO=106;RPL=0;RPP=55.1256;RPPR=233.186;RPR=24;RUN=1;SAF=24;SAP=55.1256;SAR=0;SRF=106;SRP=233.186;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:67:57,10:57:2307:10:404:-16.551,0,-187.61 0/1:21:14,7:14:572:7:285:-19.7028,0,-45.5 0/1:42:35,7:35:1398:7:265:-11.5603,0,-113.421 dDocent_Contig_2704 124 . A T 43.3323 . AB=0.2;ABP=14.7363;AC=1;AF=0.166667;AN=6;AO=3;CIGAR=1X3M1X;DP=52;DPB=52;DPRA=0.810811;EPP=9.52472;EPPR=100.727;GTI=0;LEN=1;MEANALT=3;MQM=44;MQMR=60;NS=3;NUMALT=2;ODDS=0;PAIRED=0;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=106;QR=1528;RO=45;RPL=0;RPP=9.52472;RPPR=100.727;RPR=3;RUN=1;SAF=0;SAP=9.52472;SAR=3;SRF=0;SRP=100.727;SRR=45;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|0:21:21,0,0:21:719:0,0:0,0:0,-6.32163,-65.0299,-6.32163,-65.0299,-65.0299 0|1:15:8,3,3:8:267:3,3:106,42:-6.15712,0,-20.8239,-6.57208,-19.6901,-27.2775 0|0:16:16,0,0:16:542:0,0:0,0:0,-4.81648,-49.1013,-4.81648,-49.1013,-49.1013 dDocent_Contig_2705 125 . C T 287.873 . AB=0.285714;ABP=22.5536;AC=2;AF=0.333333;AN=6;AO=14;CIGAR=1X;DP=71;DPB=71;DPRA=1.11364;EPP=33.4109;EPPR=126.784;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=515;QR=2058;RO=57;RPL=0;RPP=33.4109;RPPR=126.784;RPR=14;RUN=1;SAF=0;SAP=33.4109;SAR=14;SRF=0;SRP=126.784;SRR=57;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:22:22,0:22:800:0:0:0,-6.62266,-72.3227 0/1:14:11,3:11:380:3:111:-6.1395,0,-30.3148 0/1:35:24,11:24:878:11:404:-26.1706,0,-68.8001 dDocent_Contig_2706 28 . G T 98.8919 . AB=0.0961538;ABP=371.325;AC=1;AF=0.166667;AN=6;AO=46;CIGAR=1X;DP=552;DPB=552;DPRA=0;EPP=102.898;EPPR=1093.09;GTI=0;LEN=1;MEANALT=1.66667;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=0.998008;PAO=0;PQA=0;PQR=0;PRO=0;QA=1824;QR=19980;RO=502;RPL=0;RPP=102.898;RPPR=1093.09;RPR=46;RUN=1;SAF=46;SAP=102.898;SAR=0;SRF=502;SRP=1093.09;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:260:234,25:234:9337:25:994:-11.4121,0,-761.43 0/0:135:123,9:123:4862:9:342:0,-8.88754,-406.409 0/0:157:145,12:145:5781:12:488:0,-2.99022,-475.825 dDocent_Contig_2707 14 . A T 311.78 . AB=0.125;ABP=22.5536;AC=0;AF=0;AN=6;AO=2;CIGAR=1X3M2X1M1X;DP=40;DPB=40;DPRA=0;EPP=7.35324;EPPR=57.2971;GTI=0;LEN=1;MEANALT=2;MQM=17;MQMR=60;NS=3;NUMALT=2;ODDS=0;PAIRED=0;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=78;QR=974;RO=25;RPL=0;RPP=7.35324;RPPR=57.2971;RPR=2;RUN=1;SAF=2;SAP=7.35324;SAR=0;SRF=25;SRP=57.2971;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|0:16:11,2,3:11:429:2,3:78,117:-6.43772,-7.38402,-42.0441,0,-33.0291,-34.5451 0|0:11:5,0,6:5:194:0,6:0,245:-19.1181,-20.6233,-36.5537,0,-16.3272,-14.521 0|0:13:9,0,4:9:351:0,4:0,163:-11.145,-13.8543,-42.6933,0,-29.2406,-28.0365 dDocent_Contig_2708 7 . C A 160.21 . AB=0.14433;ABP=109.592;AC=3;AF=0.5;AN=6;AO=14;CIGAR=1X;DP=97;DPB=97;DPRA=0;EPP=33.4109;EPPR=183.243;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=537;QR=3200;RO=83;RPL=0;RPP=33.4109;RPPR=183.243;RPR=14;RUN=1;SAF=14;SAP=33.4109;SAR=0;SRF=83;SRP=183.243;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:36:28,8:28:1080:8:310:-17.4266,0,-86.6671 0/1:10:9,1:9:347:1:39:-0.886264,0,-28.5795 0/1:51:46,5:46:1773:5:188:-1.93068,0,-144.472 dDocent_Contig_2709 74 . G A 1716.13 . AB=0.284722;ABP=118.943;AC=3;AF=0.5;AN=6;AO=82;CIGAR=1X;DP=288;DPB=288;DPRA=0;EPP=181.071;EPPR=450.334;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=2921;QR=7305;RO=206;RPL=82;RPP=181.071;RPPR=450.334;RPR=0;RUN=1;SAF=82;SAP=181.071;SAR=0;SRF=206;SRP=450.334;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:147:88,59:88:3139:59:2105:-145.462,0,-238.469 0/1:39:32,7:32:1158:7:253:-11.3797,0,-92.7874 0/1:102:86,16:86:3008:16:563:-20.295,0,-240.25 dDocent_Contig_2710 37 . T G 622.546 . AB=0.206667;ABP=115.116;AC=3;AF=0.5;AN=6;AO=31;CIGAR=1X;DP=150;DPB=150;DPRA=0;EPP=70.3259;EPPR=261.416;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=1243;QR=4279;RO=119;RPL=0;RPP=70.3259;RPPR=261.416;RPR=31;RUN=1;SAF=31;SAP=70.3259;SAR=0;SRF=119;SRP=261.416;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:68:50,18:50:1822:18:729:-45.4649,0,-143.774 0/1:21:17,4:17:584:4:154:-7.91196,0,-46.5576 0/1:61:52,9:52:1873:9:360:-14.4006,0,-150.468 dDocent_Contig_2711 9 . T A 5876.74 . AB=0.689922;ABP=83.8429;AC=4;AF=0.666667;AN=6;AO=187;CIGAR=2X;DP=267;DPB=267;DPRA=0;EPP=409.076;EPPR=107.241;GTI=0;LEN=1;MEANALT=2;MQM=59.8289;MQMR=60;NS=3;NUMALT=2;ODDS=2.77556e-17;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=7340;QR=1870;RO=48;RPL=0;RPP=409.076;RPPR=107.241;RPR=187;RUN=1;SAF=187;SAP=409.076;SAR=0;SRF=48;SRP=107.241;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|1:189:31,140,17:31:1212:140,17:5498,689:-441.676,0,-57.4966,-395.271,-43.9016,-489.798 1|1:9:0,9,0:0:0:9,0:353,0:-32.1318,-2.70927,0,-32.1318,-2.70927,-32.1318 0|1:69:17,38,14:17:658:38,14:1489,562:-117.389,0,-42.6553,-88.2712,-19.8723,-138.105 dDocent_Contig_2712 39 . A C 166.816 . AB=0.242424;ABP=22.0271;AC=1;AF=0.166667;AN=6;AO=8;CIGAR=1X;DP=141;DPB=141;DPRA=0.611111;EPP=20.3821;EPPR=291.816;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=1.73472e-18;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=312;QR=5145;RO=133;RPL=0;RPP=20.3821;RPPR=291.816;RPR=8;RUN=1;SAF=8;SAP=20.3821;SAR=0;SRF=133;SRP=291.816;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:51:51,0:51:1968:0:0:0,-15.3525,-177.309 0/0:57:57,0:57:2189:0:0:0,-17.1587,-197.186 0/1:33:25,8:25:988:8:312:-18.5055,0,-79.2874 dDocent_Contig_2713 12 . A G 746.761 . AB=0.530612;ABP=3.40914;AC=2;AF=0.333333;AN=6;AO=26;CIGAR=1X;DP=58;DPB=58;DPRA=2.72222;EPP=59.4686;EPPR=72.4974;GTI=0;LEN=1;MEANALT=1;MQM=58.8462;MQMR=59.25;NS=3;NUMALT=1;ODDS=0;PAIRED=0;PAIREDR=0.875;PAO=0;PQA=0;PQR=0;PRO=0;QA=1026;QR=1283;RO=32;RPL=0;RPP=59.4686;RPPR=72.4974;RPR=26;RUN=1;SAF=26;SAP=59.4686;SAR=0;SRF=32;SRP=72.4974;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:21:8,13:8:324:13:527:-41.3831,0,-23.2078 0/1:28:15,13:15:600:13:499:-36.8159,0,-45.8598 0/0:9:9,0:9:359:0:0:0,-2.70927,-32.6731 dDocent_Contig_2714 72 . A G 75.2509 . AB=0.3125;ABP=7.89611;AC=1;AF=0.166667;AN=6;AO=5;CIGAR=1X;DP=34;DPB=34;DPRA=1.77778;EPP=13.8677;EPPR=65.983;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=154;QR=923;RO=29;RPL=5;RPP=13.8677;RPPR=65.983;RPR=0;RUN=1;SAF=5;SAP=13.8677;SAR=0;SRF=29;SRP=65.983;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:11:11,0:11:352:0:0:0,-3.31133,-31.992 0/0:7:7,0:7:229:0:0:0,-2.10721,-20.9317 0/1:16:11,5:11:342:5:154:-9.34899,0,-26.2673 dDocent_Contig_2715 15 . G A 13565.8 . AB=0.865079;ABP=440.614;AC=4;AF=0.666667;AN=6;AO=431;CIGAR=1X;DP=490;DPB=490;DPRA=0;EPP=938.915;EPPR=128.956;GTI=0;LEN=1;MEANALT=1.33333;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=16709;QR=2292;RO=58;RPL=0;RPP=938.915;RPPR=128.956;RPR=431;RUN=1;SAF=431;SAP=938.915;SAR=0;SRF=58;SRP=128.956;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:254:35,218:35:1376:218:8448:-683.533,0,-47.6544 1/1:112:8,104:8:325:104:4026:-332.758,-4.09593,0 0/1:124:15,109:15:591:109:4235:-343.813,0,-16.1956 dDocent_Contig_2716 1 . N G 188.02 . AB=0;ABP=0;AC=4;AF=1;AN=4;AO=5;CIGAR=1X;DP=5;DPB=5;DPRA=0;EPP=13.8677;EPPR=0;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=0;NS=2;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=197;QR=0;RO=0;RPL=0;RPP=13.8677;RPPR=0;RPR=5;RUN=1;SAF=5;SAP=13.8677;SAR=0;SRF=0;SRP=0;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 1/1:3:0,3:0:0:3:117:-10.9086,-0.90309,0 1/1:2:0,2:0:0:2:80:-7.59157,-0.60206,0 ./.:.:.:.:.:.:.:. dDocent_Contig_2717 10 . C A 1647.86 . AB=0.27572;ABP=109.18;AC=3;AF=0.5;AN=6;AO=67;CIGAR=1X;DP=243;DPB=243;DPRA=0;EPP=148.499;EPPR=385.189;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=2695;QR=7099;RO=176;RPL=0;RPP=148.499;RPPR=385.189;RPR=67;RUN=1;SAF=67;SAP=148.499;SAR=0;SRF=176;SRP=385.189;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:122:97,25:97:3912:25:1002:-53.7463,0,-315.335 0/1:45:26,19:26:1052:19:773:-56.3414,0,-81.4233 0/1:76:53,23:53:2135:23:920:-60.2215,0,-169.447 dDocent_Contig_2718 108 . T C 70.2968 . AB=0.238095;ABP=15.5221;AC=1;AF=0.166667;AN=6;AO=8;CIGAR=1X;DP=80;DPB=80;DPRA=1.85294;EPP=20.3821;EPPR=159.356;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=3.46945e-18;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=270;QR=2399;RO=72;RPL=0;RPP=20.3821;RPPR=159.356;RPR=8;RUN=1;SAF=0;SAP=20.3821;SAR=8;SRF=0;SRP=159.356;SRR=72;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:42:39,3:39:1302:3:105:0,-2.8471,-107.677 0/0:17:17,0:17:568:0:0:0,-5.11751,-51.436 0/1:21:16,5:16:529:5:165:-8.85359,0,-41.6036 dDocent_Contig_2719 116 . G T 2165.6 . AB=0.770833;ABP=64.1734;AC=4;AF=0.666667;AN=6;AO=79;CIGAR=1X;DP=101;DPB=101;DPRA=0;EPP=174.557;EPPR=50.7827;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=2756;QR=728;RO=22;RPL=0;RPP=174.557;RPPR=50.7827;RPR=79;RUN=1;SAF=0;SAP=174.557;SAR=79;SRF=0;SRP=50.7827;SRR=22;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:62:14,48:14:476:48:1671:-132.011,0,-24.5008 1/1:5:0,5:0:0:5:174:-16.0016,-1.50515,0 0/1:34:8,26:8:252:26:911:-72.0704,0,-12.7528 dDocent_Contig_2720 53 . C T 225.064 . AB=0.206349;ABP=50.1967;AC=3;AF=0.5;AN=6;AO=13;CIGAR=1X;DP=63;DPB=63;DPRA=0;EPP=31.2394;EPPR=111.584;GTI=0;LEN=1;MEANALT=1;MQM=50.7692;MQMR=60;NS=3;NUMALT=1;ODDS=3.46945e-18;PAIRED=0.538462;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=510;QR=1965;RO=50;RPL=13;RPP=31.2394;RPPR=111.584;RPR=0;RUN=1;SAF=13;SAP=31.2394;SAR=0;SRF=50;SRP=111.584;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:33:30,3:30:1198:3:123:-0.555139,0,-98.1618 0/1:10:8,2:8:316:2:77:-4.29884,0,-25.7944 0/1:20:12,8:12:451:8:310:-21.7245,0,-34.8989 dDocent_Contig_2721 130 . A T 1525.31 . AB=0.733333;ABP=38.4777;AC=3;AF=0.5;AN=6;AO=55;CIGAR=1X;DP=75;DPB=75;DPRA=0;EPP=122.441;EPPR=46.4397;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=1996;QR=714;RO=20;RPL=0;RPP=122.441;RPPR=46.4397;RPR=55;RUN=1;SAF=0;SAP=122.441;SAR=55;SRF=0;SRP=46.4397;SRR=20;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:48:11,37:11:398:37:1338:-106.266,0,-21.7133 0/1:10:3,7:3:103:7:252:-20.0177,0,-6.59866 0/1:17:6,11:6:213:11:406:-31.7703,0,-14.3979 dDocent_Contig_2722 21 . T G 1045.9 . AB=0.38835;ABP=14.1628;AC=3;AF=0.5;AN=6;AO=40;CIGAR=1X;DP=103;DPB=103;DPRA=0;EPP=89.8692;EPPR=129.096;GTI=0;LEN=1;MEANALT=1.33333;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=0.983871;PAO=0;PQA=0;PQR=0;PRO=0;QA=1558;QR=2472;RO=62;RPL=0;RPP=89.8692;RPPR=137.642;RPR=40;RUN=1;SAF=40;SAP=89.8692;SAR=0;SRF=61;SRP=129.096;SRR=1;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:54:35,19:35:1391:19:746:-51.1966,0,-109.184 0/1:20:8,11:8:311:11:440:-33.8342,0,-22.2261 0/1:29:19,10:19:770:10:372:-25.0823,0,-60.8894 dDocent_Contig_2723 44 . T C 233.995 . AB=0.159574;ABP=97.6311;AC=2;AF=0.333333;AN=6;AO=15;CIGAR=1X;DP=118;DPB=118;DPRA=1.95833;EPP=35.5824;EPPR=193.278;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=6.93889e-18;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=603;QR=4074;RO=103;RPL=0;RPP=35.5824;RPPR=193.278;RPR=15;RUN=1;SAF=15;SAP=35.5824;SAR=0;SRF=103;SRP=226.672;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:87:73,14:73:2881:14:563:-24.8228,0,-233.217 0/1:7:6,1:6:245:1:40:-1.88847,0,-20.3223 0/0:24:24,0:24:948:0:0:0,-7.22472,-85.6151 dDocent_Contig_2725 11 . C T 2372.78 . AB=0.20614;ABP=174.023;AC=6;AF=1;AN=6;AO=47;CIGAR=4M1X13M;DP=228;DPB=233.111;DPRA=0;EPP=105.07;EPPR=42.0968;GTI=0;LEN=1;MEANALT=7.66667;MQM=60;MQMR=60;NS=3;NUMALT=8;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=1892;QR=709;RO=18;RPL=0;RPP=105.07;RPPR=42.0968;RPR=47;RUN=1;SAF=47;SAP=105.07;SAR=0;SRF=18;SRP=42.0968;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 1|1:109:9,7,1,3,9,23,20,27,9:9:350:7,1,3,9,23,20,27,9:260,39,120,340,798,796,1096,360:-124.478,-105.911,-132.565,-123.982,-131.467,-152.442,-117.319,-124.804,-142.874,-145.176,-100.861,-108.346,-126.417,-119.753,-126.913,-63.5112,-70.9962,-89.0657,-82.4026,-65.9467,-85.347,-61.6414,-69.1268,-87.1974,-80.534,-64.0768,-26.7276,-84.382,-36.7875,-44.2731,-62.344,-55.6805,-39.2231,-1.87407,0,-57.4215,-97.5317,-105.017,-123.087,-116.424,-99.9667,-62.6163,-60.7466,-35.8925,-123.583 1|1:56:1,8,7,6,5,8,12,9,0:1:39:8,7,6,5,8,12,9,0:283,258,218,193,309,481,359,0:-65.6966,-42.9543,-43.752,-44.9052,-25.069,-46.004,-48.4734,-28.6372,-30.5877,-49.8732,-50.147,-30.3101,-32.2608,-35.8291,-51.8479,-40.6513,-20.8148,-22.7652,-26.3336,-28.0067,-41.4492,-26.3632,-6.52638,-8.47659,-12.0452,-13.718,-4.22176,-25.9571,-36.4306,-16.5937,-18.5441,-22.1126,-23.7856,-14.2896,0,-36.9274,-65.9976,-46.1602,-48.1112,-51.6794,-53.3531,-43.8574,-29.5694,-39.6367,-69.2036 1|1:63:8,0,9,5,9,6,14,11,1:8:320:0,9,5,9,6,14,11,1:0,342,163,353,190,552,437,41:-52.6243,-55.0326,-81.3963,-26.9897,-53.3541,-50.6448,-42.4548,-68.8179,-40.7767,-67.3128,-26.0041,-52.3689,-24.3262,-39.7913,-49.6596,-40.3098,-66.6727,-38.6319,-54.0957,-37.6464,-64.8665,-9.61337,-35.979,-7.93574,-23.402,-6.94982,-21.2573,-31.7646,-19.0548,-45.42,-17.3769,-32.8425,-16.3912,-30.6977,0,-42.1087,-51.6478,-78.0117,-49.9694,-65.4334,-48.9842,-63.2882,-32.5942,-42.0352,-77.7107 dDocent_Contig_2726 45 . A T 32.5075 . AB=0.15;ABP=24.2907;AC=1;AF=0.166667;AN=6;AO=3;CIGAR=1X;DP=111;DPB=111;DPRA=0.43956;EPP=9.52472;EPPR=237.529;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=119;QR=4303;RO=108;RPL=0;RPP=9.52472;RPPR=237.529;RPR=3;RUN=1;SAF=3;SAP=9.52472;SAR=0;SRF=108;SRP=237.529;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:72:72,0:72:2894:0:0:0,-21.6742,-260.554 0/1:20:17,3:17:670:3:119:-5.07441,0,-54.6108 0/0:19:19,0:19:739:0:0:0,-5.71957,-66.8263 dDocent_Contig_2727 165 . C A 22810.8 . AB=0.176871;ABP=402.96;AC=5;AF=0.833333;AN=6;AO=701;CIGAR=1X;DP=1083;DPB=1083;DPRA=0;EPP=1525.21;EPPR=828.17;GTI=0;LEN=1;MEANALT=1.66667;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=0.978947;PAO=0;PQA=0;PQR=0;PRO=0;QA=27484;QR=14450;RO=380;RPL=701;RPP=1525.21;RPPR=828.17;RPR=0;RUN=1;SAF=0;SAP=1525.21;SAR=701;SRF=0;SRP=828.17;SRR=380;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 1/1:301:3,298:3:101:298:11750:-1047.27,-81.1891,0 0/1:441:362,78:362:13829:78:3107:-146.839,0,-1110.85 1/1:341:15,325:15:520:325:12627:-1088.5,-55.3554,0 dDocent_Contig_2728 56 . C A 83.1915 . AB=0.159091;ABP=47.4268;AC=1;AF=0.166667;AN=6;AO=10;CIGAR=1X;DP=144;DPB=144;DPRA=4;EPP=24.725;EPPR=291.816;GTI=0;LEN=1;MEANALT=1.5;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=380;QR=5267;RO=133;RPL=10;RPP=24.725;RPPR=291.816;RPR=0;RUN=1;SAF=10;SAP=24.725;SAR=0;SRF=133;SRP=291.816;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:84:81,3:81:3198:3:123:0,-13.8217,-276.431 0/0:16:16,0:16:637:0:0:0,-4.81648,-57.6658 0/1:44:36,7:36:1432:7:257:-10.1431,0,-115.797 dDocent_Contig_2729 16 . T C 579.57 . 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AB=0.866667;ABP=108.11;AC=4;AF=0.666667;AN=6;AO=195;CIGAR=1X;DP=214;DPB=214;DPRA=0;EPP=426.447;EPPR=44.2683;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=6538;QR=600;RO=19;RPL=195;RPP=426.447;RPPR=44.2683;RPR=0;RUN=1;SAF=195;SAP=426.447;SAR=0;SRF=19;SRP=44.2683;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 1/1:124:7,117:7:225:117:3907:-331.279,-16.7612,0 0/1:18:3,15:3:100:15:514:-41.1679,0,-3.91212 0/1:72:9,63:9:275:63:2117:-169.126,0,-3.37623 dDocent_Contig_2732 8 . T A 6813.59 . 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T A 323.809 . AB=0.270833;ABP=24.906;AC=2;AF=0.333333;AN=6;AO=13;CIGAR=1X1M1X2M1X;DP=61;DPB=61;DPRA=0;EPP=31.2394;EPPR=94.2121;GTI=0;LEN=1;MEANALT=2;MQM=59.3077;MQMR=60;NS=3;NUMALT=2;ODDS=6.93889e-18;PAIRED=0.307692;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=493;QR=1597;RO=42;RPL=0;RPP=31.2394;RPPR=94.2121;RPR=13;RUN=1;SAF=13;SAP=31.2394;SAR=0;SRF=42;SRP=94.2121;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|1:31:22,8,1:22:834:8,1:297,41:-17.6408,0,-65.9396,-20.8751,-64.9624,-88.957 0|1:17:10,5,2:10:381:5,2:196,80:-13.0813,0,-29.7315,-9.49905,-24.6433,-40.1424 0|0:13:10,0,3:10:382:0,3:0,119:-7.18162,-10.1919,-41.5211,0,-31.722,-30.819 dDocent_Contig_2744 7 . C T 614.268 . 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G A 949.989 . AB=0.324561;ABP=33.4871;AC=3;AF=0.5;AN=6;AO=37;CIGAR=1X;DP=114;DPB=114;DPRA=0;EPP=83.3548;EPPR=168.042;GTI=0;LEN=1;MEANALT=1.33333;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=1485;QR=3006;RO=76;RPL=0;RPP=83.3548;RPPR=168.042;RPR=37;RUN=1;SAF=37;SAP=83.3548;SAR=0;SRF=76;SRP=168.042;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:49:39,10:39:1580:10:401:-21.6994,0,-127.68 0/1:26:22,3:22:857:3:118:-3.3176,0,-69.8199 0/1:39:15,24:15:569:24:966:-75.4978,0,-39.8032 dDocent_Contig_2746 7 . C T 14170.8 . AB=0.119914;ABP=1175;AC=4;AF=0.666667;AN=6;AO=112;CIGAR=3X;DP=934;DPB=935;DPRA=0;EPP=246.215;EPPR=304.845;GTI=0;LEN=1;MEANALT=9.66667;MQM=53.0268;MQMR=59.2662;NS=3;NUMALT=4;ODDS=0;PAIRED=0.955357;PAIREDR=0.956835;PAO=0;PQA=0;PQR=0;PRO=0;QA=4238;QR=5323;RO=139;RPL=0;RPP=246.215;RPPR=304.845;RPR=112;RUN=1;SAF=112;SAP=246.215;SAR=0;SRF=139;SRP=304.845;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|1:335:58,42,147,21,42:58:2222:42,147,21,42:1533,5333,810,1586:-411.717,-306.791,-476.514,0,-59.9852,-138.116,-366.368,-426.349,-119.56,-542.413,-302.912,-362.893,-56.1045,-422.47,-472.635 1|1:318:35,12,206,13,39:35:1338:12,206,13,39:459,7491,480,1480:-596.526,-569.474,-675.647,-9.97918,-82.1798,-57.7564,-568.989,-641.186,-81.6968,-674.861,-487.296,-559.493,0,-559.008,-585.341 0|1:281:46,21,150,24,31:46:1763:21,150,24,31:770,5361,909,1172:-414.359,-366.506,-504.108,0,-82.2267,-98.7703,-354.371,-436.595,-70.0904,-491.07,-337.349,-419.573,-53.0709,-407.438,-471.941 dDocent_Contig_2748 31 . A C 520.398 . AB=0.24;ABP=61.7269;AC=3;AF=0.5;AN=6;AO=24;CIGAR=1X;DP=100;DPB=100;DPRA=0;EPP=55.1256;EPPR=168.042;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=962;QR=3012;RO=76;RPL=0;RPP=55.1256;RPPR=168.042;RPR=24;RUN=1;SAF=24;SAP=55.1256;SAR=0;SRF=76;SRP=168.042;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:58:43,15:43:1716:15:611:-37.8677,0,-137.202 0/1:20:15,5:15:588:5:195:-11.9021,0,-47.236 0/1:22:18,4:18:708:4:156:-7.79284,0,-57.4202 dDocent_Contig_2749 96 . T C 351.042 . AB=0.5;ABP=3.0103;AC=2;AF=0.333333;AN=6;AO=15;CIGAR=1X;DP=37;DPB=37;DPRA=2.14286;EPP=35.5824;EPPR=50.7827;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=522;QR=750;RO=22;RPL=15;RPP=35.5824;RPPR=50.7827;RPR=0;RUN=1;SAF=15;SAP=35.5824;SAR=0;SRF=22;SRP=50.7827;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:7:7,0:7:234:0:0:0,-2.10721,-21.3878 0/1:18:8,10:8:278:10:348:-26.2375,0,-19.9395 0/1:12:7,5:7:238:5:174:-12.3896,0,-18.1404 dDocent_Contig_2751 7 . C T 1011.83 . AB=0.0488127;ABP=1343.3;AC=0;AF=0;AN=6;AO=38;CIGAR=2M1X2M;DP=949;DPB=932.4;DPRA=0;EPP=85.5263;EPPR=1668.53;GTI=0;LEN=1;MEANALT=5.33333;MQM=60;MQMR=60;NS=3;NUMALT=2;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=1458;QR=29466;RO=767;RPL=0;RPP=85.5263;RPPR=1668.53;RPR=38;RUN=1;SAF=38;SAP=85.5263;SAR=0;SRF=767;SRP=1668.53;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|0:441:361,51,11:361:13876:51,11:1953,428:-51.5741,0,-1123.82,-125.069,-1104,-1260.93 0|0:191:169,12,1:169:6460:12,1:453,39:0,-14.0191,-540.487,-47.6675,-540.893,-577.448 0|0:317:237,40,26:237:9130:40,26:1518,991:-53.1322,0,-737.667,-43.1794,-668.416,-785.058 dDocent_Contig_2753 17 . C A 36.7573 . AB=0.137931;ABP=36.0317;AC=1;AF=0.166667;AN=6;AO=4;CIGAR=1X;DP=161;DPB=161;DPRA=0.439394;EPP=11.6962;EPPR=343.931;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=154;QR=6099;RO=157;RPL=0;RPP=11.6962;RPPR=343.931;RPR=4;RUN=1;SAF=4;SAP=11.6962;SAR=0;SRF=157;SRP=343.931;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:95:95,0:95:3694:0:0:0,-28.5978,-332.501 0/1:29:25,4:25:955:4:154:-5.49955,0,-77.5159 0/0:37:37,0:37:1450:0:0:0,-11.1381,-130.747 dDocent_Contig_2755 82 . C T 35.8678 . AB=0.142857;ABP=34.0313;AC=2;AF=0.333333;AN=6;AO=5;CIGAR=2X;DP=40;DPB=40;DPRA=0;EPP=13.8677;EPPR=79.0118;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=182;QR=1293;RO=35;RPL=5;RPP=13.8677;RPPR=79.0118;RPR=0;RUN=1;SAF=5;SAP=13.8677;SAR=0;SRF=35;SRP=79.0118;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|1:19:16,3:16:588:3:116:-5.09813,0,-47.5365 0|0:12:11,1:11:418:1:30:0,-0.612793,-34.9722 0|1:9:8,1:8:287:1:36:-0.889005,0,-23.4666 dDocent_Contig_2756 18 . T A 2617.96 . AB=0.746988;ABP=46.9892;AC=4;AF=0.666667;AN=6;AO=80;CIGAR=1X;DP=101;DPB=101;DPRA=0;EPP=176.728;EPPR=48.6112;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=6.93889e-18;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=3216;QR=855;RO=21;RPL=0;RPP=176.728;RPPR=48.6112;RPR=80;RUN=1;SAF=80;SAP=176.728;SAR=0;SRF=21;SRP=48.6112;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:47:14,33:14:571:33:1329:-105.725,0,-37.5835 1/1:18:0,18:0:0:18:710:-64.2281,-5.41854,0 0/1:36:7,29:7:284:29:1177:-95.366,0,-15.0963 dDocent_Contig_2757 8 . T C 99.5966 . AB=0.104046;ABP=238.596;AC=1;AF=0.166667;AN=6;AO=39;CIGAR=1X;DP=610;DPB=610;DPRA=0;EPP=87.6977;EPPR=1212.52;GTI=0;LEN=1;MEANALT=2;MQM=60;MQMR=59.4686;NS=3;NUMALT=1;ODDS=0;PAIRED=0.025641;PAIREDR=0.540395;PAO=0;PQA=0;PQR=0;PRO=0;QA=1495;QR=21459;RO=557;RPL=0;RPP=87.6977;RPPR=1212.52;RPR=39;RUN=1;SAF=39;SAP=87.6977;SAR=0;SRF=557;SRP=1212.52;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:332:313,14:313:12094:14:537:0,-50.1458,-1038.44 0/0:105:95,7:95:3612:7:268:0,-6.59494,-299.364 0/1:173:149,18:149:5753:18:690:-11.7836,0,-466.997 dDocent_Contig_2758 23 . T C 131.198 . AB=0.241379;ABP=19.8579;AC=3;AF=0.5;AN=6;AO=7;CIGAR=1X;DP=29;DPB=29;DPRA=0;EPP=18.2106;EPPR=50.7827;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=3.46945e-18;PAIRED=0.857143;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=283;QR=875;RO=22;RPL=0;RPP=18.2106;RPPR=50.7827;RPR=7;RUN=1;SAF=7;SAP=18.2106;SAR=0;SRF=22;SRP=50.7827;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:14:9,5:9:357:5:201:-14.2565,0,-28.2784 0/1:6:5,1:5:198:1:41:-2.28839,0,-16.3901 0/1:9:8,1:8:320:1:41:-1.3853,0,-26.459 dDocent_Contig_2759 8 . A G 8742.11 . AB=0.890476;ABP=281.124;AC=4;AF=0.666667;AN=6;AO=280;CIGAR=1X;DP=310;DPB=310;DPRA=0;EPP=611.023;EPPR=68.1545;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=58.4;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=10712;QR=1150;RO=30;RPL=0;RPP=611.023;RPPR=68.1545;RPR=280;RUN=1;SAF=280;SAP=611.023;SAR=0;SRF=30;SRP=68.1545;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:92:10,82:10:384:82:3162:-257.037,0,-7.22156 1/1:100:7,93:7:273:93:3512:-292.711,-6.58953,0 0/1:118:13,105:13:493:105:4038:-327.986,0,-9.19386 dDocent_Contig_2761 8 . G A 301.315 . AB=0.25;ABP=31.2394;AC=3;AF=0.5;AN=6;AO=13;CIGAR=1X1M;DP=52;DPB=52;DPRA=0;EPP=31.2394;EPPR=68.1545;GTI=0;LEN=1;MEANALT=1.66667;MQM=60;MQMR=60;NS=3;NUMALT=2;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=494;QR=1133;RO=30;RPL=0;RPP=31.2394;RPPR=68.1545;RPR=13;RUN=1;SAF=13;SAP=31.2394;SAR=0;SRF=30;SRP=68.1545;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|1:16:14,0,2:14:534:0,2:0,78:-2.58699,-6.80141,-50.6028,0,-44.19,-43.5879 0|1:24:9,8,7:9:331:8,7:306,261:-22.4064,0,-24.6517,-3.75407,-5.69159,-28.7018 0|1:12:7,1,4:7:268:1,4:39,155:-10.6249,-9.52579,-31.216,0,-18.7812,-20.7839 dDocent_Contig_2762 120 . T C 304.603 . AB=0.175573;ABP=122.773;AC=1;AF=0.166667;AN=6;AO=28;CIGAR=1X;DP=217;DPB=217;DPRA=0;EPP=63.8115;EPPR=413.419;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=945;QR=6422;RO=189;RPL=0;RPP=63.8115;RPPR=413.419;RPR=28;RUN=1;SAF=0;SAP=63.8115;SAR=28;SRF=0;SRP=413.419;SRR=189;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:131:108,23:108:3692:23:790:-31.9831,0,-293.067 0/0:35:34,1:34:1110:1:29:0,-7.63639,-97.2922 0/0:51:47,4:47:1620:4:126:0,-3.70138,-134.439 dDocent_Contig_2763 20 . T C 1213.06 . AB=0.114622;ABP=1758.7;AC=3;AF=0.5;AN=6;AO=156;CIGAR=1X;DP=1361;DPB=1361;DPRA=0;EPP=324.611;EPPR=2619.63;GTI=0;LEN=1;MEANALT=1;MQM=55.3654;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=0.608974;PAIREDR=0.941909;PAO=0;PQA=0;PQR=0;PRO=0;QA=6145;QR=47573;RO=1205;RPL=0;RPP=341.76;RPPR=2619.63;RPR=156;RUN=1;SAF=154;SAP=324.611;SAR=2;SRF=1205;SRP=2619.63;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:689:615,74:615:24329:74:2920:-46.2127,0,-1980.21 0/1:228:188,40:188:7427:40:1574:-69.385,0,-599.48 0/1:444:402,42:402:15817:42:1651:-11.2312,0,-1288.77 dDocent_Contig_2764 1 . N G 32178.1 . AB=0.204196;ABP=1089.83;AC=6;AF=1;AN=6;AO=292;CIGAR=1X2M1X4M;DP=1430;DPB=1727.88;DPRA=0;EPP=637.08;EPPR=0;GTI=0;LEN=1;MEANALT=13.3333;MQM=59.6712;MQMR=0;NS=3;NUMALT=3;ODDS=0;PAIRED=0;PAIREDR=0;PAO=4.5;PQA=170;PQR=246;PRO=6.5;QA=9840;QR=0;RO=0;RPL=0;RPP=637.08;RPPR=0;RPR=292;RUN=1;SAF=0;SAP=637.08;SAR=292;SRF=0;SRP=0;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 1|1:396:0,35,239,86:0:0:35,239,86:1189,7995,2903:-880.763,-785.241,-774.705,-234.48,-138.959,-162.534,-646.282,-550.76,0,-620.393 1|1:535:0,31,360,92:0:0:31,360,92:1026,11796,3105:-1202.81,-1120.57,-1111.23,-251.662,-169.417,-143.291,-951.147,-868.901,0,-923.452 1|1:499:0,32,310,114:0:0:32,310,114:1065,10262,3832:-1139.76,-1054.29,-1044.66,-310.442,-224.975,-217.122,-829.317,-743.85,0,-795 dDocent_Contig_2765 22 . G A 237.489 . AB=0.227273;ABP=31.4368;AC=2;AF=0.333334;AN=6;AO=11;CIGAR=4M1X;DP=72;DPB=72.8;DPRA=0;EPP=26.8965;EPPR=131.127;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=2;ODDS=3.46945e-18;PAIRED=0.909091;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=436;QR=2355;RO=59;RPL=0;RPP=26.8965;RPPR=131.127;RPR=11;RUN=1;SAF=11;SAP=26.8965;SAR=0;SRF=59;SRP=131.127;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|1:44:34,0,10:34:1365:0,10:0,403:-23.3845,-33.6196,-146.093,0,-112.875,-109.865 0|1:12:10,2,0:10:401:2,0:79,0:-3.88527,0,-32.8377,-6.89557,-33.4398,-39.9398 0|0:16:15,0,1:15:589:0,1:0,33:0,-4.51545,-53.0114,-1.51734,-50.3471,-50.0461 dDocent_Contig_2767 8 . G C 1853.98 . AB=0.419162;ABP=12.4894;AC=3;AF=0.5;AN=6;AO=70;CIGAR=1X;DP=167;DPB=167;DPRA=0;EPP=155.013;EPPR=213.643;GTI=0;LEN=1;MEANALT=1;MQM=58.3857;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=0;PAIREDR=0.886598;PAO=0;PQA=0;PQR=0;PRO=0;QA=2684;QR=3703;RO=97;RPL=0;RPP=155.013;RPPR=213.643;RPR=70;RUN=1;SAF=70;SAP=155.013;SAR=0;SRF=97;SRP=213.643;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:95:59,36:59:2247:36:1383:-94.9909,0,-173.852 0/1:28:14,14:14:531:14:526:-39.1613,0,-39.7046 0/1:44:24,20:24:925:20:775:-56.7683,0,-70.3204 dDocent_Contig_2768 17 . G T 66.054 . AB=0.133333;ABP=55.5599;AC=1;AF=0.166667;AN=6;AO=6;CIGAR=1M1I5M1X2M;DP=138;DPB=138.889;DPRA=0.967742;EPP=16.0391;EPPR=283.13;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=2;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=240;QR=5024;RO=129;RPL=0;RPP=16.0391;RPPR=283.13;RPR=6;RUN=1;SAF=6;SAP=16.0391;SAR=0;SRF=129;SRP=283.13;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|0:59:58,0,0:58:2241:0,0:0,0:0,-17.4597,-201.782,-17.4597,-201.782,-201.782 0|1:45:39,6,0:39:1532:6,0:240,0:-8.4293,0,-124.589,-20.1695,-126.395,-146.166 0|0:34:32,0,2:32:1251:0,2:0,80:0,-9.63296,-112.468,-2.64323,-105.878,-105.276 dDocent_Contig_2769 7 . T C 5563.16 . AB=0.901235;ABP=116.275;AC=5;AF=0.833333;AN=6;AO=181;CIGAR=1X;DP=197;DPB=197;DPRA=0;EPP=396.047;EPPR=37.7539;GTI=0;LEN=1;MEANALT=1;MQM=53.3702;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=0.966851;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=6961;QR=620;RO=16;RPL=0;RPP=396.047;RPPR=37.7539;RPR=181;RUN=1;SAF=181;SAP=396.047;SAR=0;SRF=16;SRP=37.7539;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:81:8,73:8:311:73:2818:-218.803,0,-3.97088 1/1:22:0,22:0:0:22:849:-71.4457,-6.62266,0 1/1:94:8,86:8:309:86:3294:-267.588,-0.123853,0 dDocent_Contig_2770 98 . N T 92.9048 . AB=0;ABP=0;AC=4;AF=1;AN=4;AO=3;CIGAR=1X;DP=3;DPB=3;DPRA=0;EPP=9.52472;EPPR=0;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=0;NS=2;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=93;QR=0;RO=0;RPL=3;RPP=9.52472;RPPR=0;RPR=0;RUN=1;SAF=3;SAP=9.52472;SAR=0;SRF=0;SRP=0;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 1/1:2:0,2:0:0:2:62:-5.8882,-0.60206,0 ./.:.:.:.:.:.:.:. 1/1:1:0,1:0:0:1:31:-3.09945,-0.30103,0 dDocent_Contig_2771 73 . C T 46.3896 . AB=0.2;ABP=18.6449;AC=1;AF=0.166667;AN=6;AO=4;CIGAR=1X;DP=76;DPB=76;DPRA=0.714286;EPP=11.6962;EPPR=159.356;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=135;QR=2420;RO=72;RPL=4;RPP=11.6962;RPPR=159.356;RPR=0;RUN=1;SAF=4;SAP=11.6962;SAR=0;SRF=72;SRP=159.356;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:49:49,0:49:1638:0:0:0,-14.7505,-147.703 0/0:7:7,0:7:242:0:0:0,-2.10721,-22.1177 0/1:20:16,4:16:540:4:135:-6.46285,0,-42.9014 dDocent_Contig_2776 122 . G T 38.1748 . AB=0.178571;ABP=28.1373;AC=2;AF=0.333333;AN=6;AO=5;CIGAR=1X;DP=119;DPB=119;DPRA=0.153846;EPP=13.8677;EPPR=241.948;GTI=0;LEN=1;MEANALT=1;MQM=58;MQMR=57.886;NS=3;NUMALT=1;ODDS=1.73472e-18;PAIRED=1;PAIREDR=0.842105;PAO=0;PQA=0;PQR=0;PRO=0;QA=161;QR=3793;RO=114;RPL=0;RPP=13.8677;RPPR=250.558;RPR=5;RUN=1;SAF=0;SAP=13.8677;SAR=5;SRF=1;SRP=241.948;SRR=113;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:91:91,0:91:3036:0:0:0,-27.3937,-268.404 0/1:8:7,1:7:209:1:35:-1.09039,0,-16.6935 0/1:20:16,4:16:548:4:126:-5.62385,0,-43.4133 dDocent_Contig_2777 17 . G A 58.4758 . AB=0.12766;ABP=59.6072;AC=1;AF=0.166667;AN=6;AO=8;CIGAR=1X;DP=85;DPB=85;DPRA=3.36364;EPP=20.3821;EPPR=170.214;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=315;QR=3000;RO=77;RPL=0;RPP=20.3821;RPPR=170.214;RPR=8;RUN=1;SAF=8;SAP=20.3821;SAR=0;SRF=77;SRP=170.214;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:47:41,6:41:1577:6:235:-7.37004,0,-128.013 0/0:11:11,0:11:421:0:0:0,-3.31133,-38.2287 0/0:27:25,2:25:1002:2:80:0,-0.536019,-82.8845 dDocent_Contig_2778 8 . G A 33.8776 . AB=0.108434;ABP=113.546;AC=2;AF=0.333333;AN=6;AO=14;CIGAR=1X;DP=229;DPB=229;DPRA=0;EPP=33.4109;EPPR=469.877;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=537;QR=8245;RO=215;RPL=0;RPP=33.4109;RPPR=469.877;RPR=14;RUN=1;SAF=14;SAP=33.4109;SAR=0;SRF=215;SRP=469.877;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:146:141,5:141:5395:5:191:0,-26.3923,-467.982 0/1:25:22,3:22:846:3:117:-3.38463,0,-68.9358 0/1:58:52,6:52:2004:6:229:-3.51557,0,-163.134 dDocent_Contig_2779 64 . A G 353.842 . AB=0.272727;ABP=27.6861;AC=2;AF=0.333333;AN=6;AO=15;CIGAR=1X;DP=79;DPB=79;DPRA=1.14583;EPP=35.5824;EPPR=141.985;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=59.8906;NS=3;NUMALT=1;ODDS=3.46945e-18;PAIRED=1;PAIREDR=0.984375;PAO=0;PQA=0;PQR=0;PRO=0;QA=608;QR=2526;RO=64;RPL=15;RPP=35.5824;RPPR=141.985;RPR=0;RUN=1;SAF=15;SAP=35.5824;SAR=0;SRF=64;SRP=141.985;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:39:27,12:27:1058:12:486:-32.3511,0,-83.7666 0/0:24:24,0:24:948:0:0:0,-7.22472,-85.6094 0/1:16:13,3:13:520:3:122:-6.55601,0,-42.3296 dDocent_Contig_2780 14 . G A 366.264 . AB=0.172131;ABP=116.924;AC=2;AF=0.333333;AN=6;AO=25;CIGAR=1X;DP=176;DPB=176;DPRA=0;EPP=57.2971;EPPR=330.903;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=59.6556;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=0.986755;PAO=0;PQA=0;PQR=0;PRO=0;QA=1006;QR=5982;RO=151;RPL=0;RPP=57.2971;RPPR=330.903;RPR=25;RUN=1;SAF=25;SAP=57.2971;SAR=0;SRF=151;SRP=330.903;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:94:76,18:76:2992:18:724:-37.1894,0,-240.524 0/1:28:25,3:25:997:3:122:-2.94365,0,-80.8983 0/0:54:50,4:50:1993:4:160:0,-1.4727,-164.778 dDocent_Contig_2781 97 . A C 53.5644 . AB=0.166667;ABP=31.9633;AC=1;AF=0.166667;AN=6;AO=5;CIGAR=1X;DP=80;DPB=80;DPRA=1.2;EPP=13.8677;EPPR=165.871;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=173;QR=2570;RO=75;RPL=5;RPP=13.8677;RPPR=165.871;RPR=0;RUN=1;SAF=5;SAP=13.8677;SAR=0;SRF=75;SRP=165.871;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:30:25,5:25:851:5:173:-6.87931,0,-67.8733 0/0:11:11,0:11:375:0:0:0,-3.31133,-34.0796 0/0:39:39,0:39:1344:0:0:0,-11.7402,-121.262 dDocent_Contig_2782 106 . N T 342.114 . AB=0;ABP=0;AC=6;AF=1;AN=6;AO=11;CIGAR=2X;DP=11;DPB=15;DPRA=0;EPP=26.8965;EPPR=0;GTI=0;LEN=1;MEANALT=1;MQM=51.5455;MQMR=0;NS=3;NUMALT=1;ODDS=0;PAIRED=0.181818;PAIREDR=0;PAO=8;PQA=276;PQR=0;PRO=0;QA=373;QR=0;RO=0;RPL=0;RPP=26.8965;RPPR=0;RPR=11;RUN=1;SAF=0;SAP=26.8965;SAR=11;SRF=0;SRP=0;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 1|1:5:0,5:0:0:5:179:-16.284,-1.50515,0 1|1:2:0,2:0:0:2:62:-5.45983,-0.60206,0 1|1:4:0,4:0:0:4:132:-11.8651,-1.20412,0 dDocent_Contig_2783 55 . G A 61.4275 . AB=0.145455;ABP=63.0614;AC=3;AF=0.5;AN=6;AO=8;CIGAR=1X;DP=55;DPB=55;DPRA=0;EPP=20.3821;EPPR=105.07;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=3.46945e-18;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=301;QR=1868;RO=47;RPL=8;RPP=20.3821;RPPR=105.07;RPR=0;RUN=1;SAF=8;SAP=20.3821;SAR=0;SRF=47;SRP=105.07;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:24:21,3:21:833:3:116:-3.59227,0,-68.0623 0/1:15:13,2:13:515:2:78:-2.88733,0,-42.1828 0/1:16:13,3:13:520:3:107:-5.16403,0,-42.3315 dDocent_Contig_2784 98 . N A 2121.32 . AB=0;ABP=0;AC=6;AF=1;AN=6;AO=71;CIGAR=1X;DP=71;DPB=71;DPRA=0;EPP=157.185;EPPR=0;GTI=0;LEN=1;MEANALT=1;MQM=51.2254;MQMR=0;NS=3;NUMALT=1;ODDS=0;PAIRED=0.535211;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=2482;QR=0;RO=0;RPL=71;RPP=157.185;RPPR=0;RPR=0;RUN=1;SAF=71;SAP=157.185;SAR=0;SRF=0;SRP=0;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 1/1:20:0,20:0:0:20:703:-57.522,-6.0206,0 1/1:33:0,33:0:0:33:1140:-97.876,-9.93399,0 1/1:18:0,18:0:0:18:639:-56.2564,-5.41854,0 dDocent_Contig_2785 7 . C T 300.152 . AB=0.241935;ABP=38.8746;AC=2;AF=0.333333;AN=6;AO=16;CIGAR=1X;DP=92;DPB=92;DPRA=0;EPP=37.7539;EPPR=168.042;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=48.4737;NS=3;NUMALT=1;ODDS=3.46945e-18;PAIRED=1;PAIREDR=0.644737;PAO=0;PQA=0;PQR=0;PRO=0;QA=611;QR=2889;RO=76;RPL=0;RPP=37.7539;RPPR=168.042;RPR=16;RUN=1;SAF=16;SAP=37.7539;SAR=0;SRF=76;SRP=168.042;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:30:29,1:29:1096:1:39:0,-5.13434,-86.0965 0/1:20:13,7:13:485:7:268:-18.4628,0,-34.7214 0/1:42:34,8:34:1308:8:304:-15.0753,0,-91.6017 dDocent_Contig_2786 8 . G C 2465.68 . AB=0.408072;ABP=19.3791;AC=3;AF=0.5;AN=6;AO=91;CIGAR=1X;DP=223;DPB=223;DPRA=0;EPP=200.614;EPPR=289.645;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=3537;QR=5077;RO=132;RPL=0;RPP=200.614;RPPR=289.645;RPR=91;RUN=1;SAF=91;SAP=200.614;SAR=0;SRF=132;SRP=289.645;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:96:47,49:47:1815:49:1903:-142.612,0,-134.701 0/1:40:26,14:26:989:14:544:-37.2649,0,-77.2789 0/1:87:59,28:59:2273:28:1090:-72.2139,0,-178.598 dDocent_Contig_2787 8 . G C 740.423 . AB=0.333333;ABP=24.725;AC=2;AF=0.333333;AN=6;AO=30;CIGAR=1X;DP=174;DPB=174;DPRA=0.535714;EPP=68.1545;EPPR=315.702;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=1155;QR=5515;RO=144;RPL=0;RPP=68.1545;RPPR=315.702;RPR=30;RUN=1;SAF=30;SAP=68.1545;SAR=0;SRF=144;SRP=315.702;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:84:84,0:84:3212:0:0:0,-25.2865,-289.231 0/1:15:13,2:13:485:2:76:-2.69922,0,-39.4753 0/1:75:47,28:47:1818:28:1079:-74.838,0,-141.291 dDocent_Contig_2789 177 . G A 289.818 . AB=0.478261;ABP=3.10471;AC=2;AF=0.333333;AN=6;AO=11;CIGAR=1X;DP=29;DPB=29;DPRA=1.91667;EPP=26.8965;EPPR=42.0968;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=430;QR=726;RO=18;RPL=11;RPP=26.8965;RPPR=42.0968;RPR=0;RUN=1;SAF=0;SAP=26.8965;SAR=11;SRF=0;SRP=42.0968;SRR=18;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:13:6,7:6:244:7:282:-21.8392,0,-18.4252 0/0:6:6,0:6:241:0:0:0,-1.80618,-22.0667 0/1:10:6,4:6:241:4:148:-10.6655,0,-19.0562 dDocent_Contig_2790 30 . T C 279.903 . AB=0.237288;ABP=38.3795;AC=3;AF=0.5;AN=6;AO=14;CIGAR=1X3M;DP=59;DPB=59;DPRA=0;EPP=33.4109;EPPR=94.2121;GTI=0;LEN=1;MEANALT=1.33333;MQM=60;MQMR=60;NS=3;NUMALT=2;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=549;QR=1633;RO=42;RPL=0;RPP=33.4109;RPPR=94.2121;RPR=14;RUN=1;SAF=14;SAP=33.4109;SAR=0;SRF=42;SRP=94.2121;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|1:26:22,0,4:22:862:0,4:0,164:-7.32312,-13.9458,-84.8081,0,-71.269,-70.0649 0|1:26:14,3,9:14:542:3,9:118,345:-24.0904,-18.5955,-62.2164,0,-34.8087,-41.8074 0|1:7:6,0,1:6:229:0,1:0,40:-1.88847,-3.69465,-22.4657,0,-19.168,-18.8669 dDocent_Contig_2791 17 . G A 50.3314 . AB=0.2;ABP=14.7363;AC=1;AF=0.166667;AN=6;AO=4;CIGAR=1X;DP=182;DPB=182;DPRA=0.291304;EPP=11.6962;EPPR=389.532;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=1.73472e-18;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=163;QR=7012;RO=178;RPL=0;RPP=11.6962;RPPR=389.532;RPR=4;RUN=1;SAF=4;SAP=11.6962;SAR=0;SRF=178;SRP=389.532;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:115:115,0:115:4556:0:0:0,-34.6184,-409.987 0/1:15:12,3:12:469:3:122:-6.85704,0,-38.0398 0/0:52:51,1:51:1987:1:41:0,-11.559,-174.942 dDocent_Contig_2792 8 . G A 428.903 . AB=0.175676;ABP=138.228;AC=2;AF=0.333333;AN=6;AO=26;CIGAR=1X;DP=166;DPB=166;DPRA=4.11111;EPP=59.4686;EPPR=307.016;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=6.93889e-18;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=1003;QR=5338;RO=140;RPL=0;RPP=59.4686;RPPR=307.016;RPR=26;RUN=1;SAF=26;SAP=59.4686;SAR=0;SRF=140;SRP=307.016;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:88:71,17:71:2699:17:659:-33.1565,0,-216.607 0/0:18:18,0:18:682:0:0:0,-5.41854,-61.7095 0/1:60:51,9:51:1957:9:344:-13.2566,0,-158.311 dDocent_Contig_2793 19 . T C 587.846 . AB=0.0727273;ABP=90.2245;AC=3;AF=0.5;AN=6;AO=4;CIGAR=1M1D1M1X3M;DP=118;DPB=111;DPRA=0;EPP=11.6962;EPPR=152.842;GTI=0;LEN=1;MEANALT=2;MQM=60;MQMR=60;NS=3;NUMALT=2;ODDS=0;PAIRED=1;PAIREDR=0.913043;PAO=0;PQA=0;PQR=0;PRO=0;QA=163;QR=2726;RO=69;RPL=0;RPP=11.6962;RPPR=152.842;RPR=4;RUN=1;SAF=4;SAP=11.6962;SAR=0;SRF=69;SRP=152.842;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|1:55:29,22,4:29:1150:22,4:861,163:-33.1272,0,-88.031,-28.3849,-81.2051,-121.93 0|1:24:16,8,0:16:631:8,0:322,0:-9.13316,0,-49.902,-13.9496,-52.3102,-65.9791 0|1:39:24,15,0:24:945:15,0:595,0:-22.0472,0,-73.6201,-29.2719,-78.1356,-107.103 dDocent_Contig_2794 7 . G C 2360.64 . AB=0.792079;ABP=77.8508;AC=3;AF=0.5;AN=6;AO=80;CIGAR=1X;DP=101;DPB=101;DPRA=0;EPP=176.728;EPPR=48.6112;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=3012;QR=650;RO=21;RPL=0;RPP=176.728;RPPR=48.6112;RPR=80;RUN=1;SAF=80;SAP=176.728;SAR=0;SRF=21;SRP=48.6112;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:43:8,35:8:221:35:1281:-102.615,0,-7.21275 0/1:23:7,16:7:240:16:619:-49.1263,0,-15.0067 0/1:35:6,29:6:189:29:1112:-89.8458,0,-6.78265 dDocent_Contig_2795 51 . T A 43.8974 . AB=0.107692;ABP=89.9026;AC=1;AF=0.166667;AN=6;AO=7;CIGAR=1X;DP=114;DPB=114;DPRA=2.65306;EPP=18.2106;EPPR=235.358;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=279;QR=4275;RO=107;RPL=7;RPP=18.2106;RPPR=235.358;RPR=0;RUN=1;SAF=7;SAP=18.2106;SAR=0;SRF=107;SRP=235.358;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:65:58,7:58:2327:7:279:-5.9126,0,-190.017 0/0:23:23,0:23:919:0:0:0,-6.92369,-83.0178 0/0:26:26,0:26:1029:0:0:0,-7.82678,-92.8973 dDocent_Contig_2796 73 . A T 264.488 . AB=0.341463;ABP=11.961;AC=2;AF=0.333333;AN=6;AO=14;CIGAR=1X;DP=55;DPB=55;DPRA=1.46429;EPP=33.4109;EPPR=92.0407;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=463;QR=1383;RO=41;RPL=14;RPP=33.4109;RPPR=92.0407;RPR=0;RUN=1;SAF=14;SAP=33.4109;SAR=0;SRF=41;SRP=92.0407;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:21:15,6:15:504:6:190:-11.0895,0,-39.3579 0/0:14:14,0:14:471:0:0:0,-4.21442,-42.7127 0/1:20:12,8:12:408:8:273:-18.8822,0,-31.0269 dDocent_Contig_2799 13 . C T 2086.43 . AB=0.589744;ABP=11.1951;AC=3;AF=0.5;AN=6;AO=69;CIGAR=1X;DP=117;DPB=117;DPRA=0;EPP=152.842;EPPR=107.241;GTI=0;LEN=1;MEANALT=1;MQM=58.4783;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=2763;QR=1935;RO=48;RPL=0;RPP=152.842;RPPR=107.241;RPR=69;RUN=1;SAF=69;SAP=152.842;SAR=0;SRF=48;SRP=107.241;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:54:16,38:16:639:38:1509:-119.739,0,-41.5866 0/1:38:23,15:23:933:15:605:-43.2777,0,-72.8326 0/1:25:9,16:9:363:16:649:-51.1494,0,-25.508 dDocent_Contig_2800 7 . C T 1374.1 . AB=0.325581;ABP=48.4597;AC=3;AF=0.5;AN=6;AO=56;CIGAR=1X;DP=172;DPB=172;DPRA=0;EPP=124.613;EPPR=252.73;GTI=0;LEN=1;MEANALT=1.33333;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=2151;QR=4447;RO=115;RPL=0;RPP=124.613;RPPR=252.73;RPR=56;RUN=1;SAF=56;SAP=124.613;SAR=0;SRF=115;SRP=252.73;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:101:66,34:66:2557:34:1313:-88.1869,0,-200.056 0/1:19:14,5:14:535:5:188:-11.5643,0,-42.7749 0/1:52:35,17:35:1355:17:650:-43.182,0,-106.58 dDocent_Contig_2801 21 . A T 52.354 . AB=0.111111;ABP=85.7675;AC=1;AF=0.166667;AN=6;AO=10;CIGAR=1X;DP=174;DPB=174;DPRA=4.61765;EPP=24.725;EPPR=359.132;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=408;QR=6559;RO=164;RPL=0;RPP=24.725;RPPR=359.132;RPR=10;RUN=1;SAF=10;SAP=24.725;SAR=0;SRF=164;SRP=359.132;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:94:91,3:91:3671:3:123:0,-16.832,-318.928 0/0:17:17,0:17:677:0:0:0,-5.11751,-61.2583 0/1:63:56,7:56:2211:7:285:-7.05931,0,-180.198 dDocent_Contig_2803 26 . C T 1262.78 . AB=0.564103;ABP=5.79424;AC=3;AF=0.5;AN=6;AO=44;CIGAR=1X;DP=78;DPB=78;DPRA=0;EPP=98.5551;EPPR=76.8404;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=1714;QR=1339;RO=34;RPL=0;RPP=98.5551;RPPR=76.8404;RPR=44;RUN=1;SAF=44;SAP=98.5551;SAR=0;SRF=34;SRP=76.8404;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:51:24,27:24:945:27:1025:-77.184,0,-69.9978 0/1:12:7,5:7:278:5:203:-15.0407,0,-21.776 0/1:15:3,12:3:116:12:486:-39.5762,0,-6.30157 dDocent_Contig_2804 70 . G A 63.5005 . AB=0.170732;ABP=41.6201;AC=2;AF=0.333333;AN=6;AO=10;CIGAR=1X;DP=90;DPB=90;DPRA=0;EPP=24.725;EPPR=176.728;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=352;QR=2750;RO=80;RPL=10;RPP=24.725;RPPR=176.728;RPR=0;RUN=1;SAF=10;SAP=24.725;SAR=0;SRF=80;SRP=176.728;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:49:46,3:46:1590:3:111:0,-4.3969,-133.026 0/1:15:11,4:11:393:4:136:-8.05654,0,-31.1923 0/1:26:23,3:23:767:3:105:-1.96911,0,-61.5136 dDocent_Contig_2805 68 . T A 2247.84 . AB=0.286472;ABP=152.312;AC=3;AF=0.5;AN=6;AO=108;CIGAR=1X;DP=377;DPB=377;DPRA=0;EPP=237.529;EPPR=587.136;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=3810;QR=9509;RO=269;RPL=108;RPP=237.529;RPPR=587.136;RPR=0;RUN=1;SAF=108;SAP=237.529;SAR=0;SRF=269;SRP=587.136;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:197:142,55:142:5068:55:1988:-119.883,0,-396.943 0/1:82:68,14:68:2416:14:502:-20.8317,0,-193.008 0/1:98:59,39:59:2025:39:1320:-89.5922,0,-153.019 dDocent_Contig_2806 98 . N T 118.358 . AB=0;ABP=0;AC=2;AF=1;AN=2;AO=4;CIGAR=2X;DP=4;DPB=4;DPRA=0;EPP=11.6962;EPPR=0;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=0;NS=1;NUMALT=1;ODDS=7.37776;PAIRED=1;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=128;QR=0;RO=0;RPL=4;RPP=11.6962;RPPR=0;RPR=0;RUN=1;SAF=4;SAP=11.6962;SAR=0;SRF=0;SRP=0;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL .:.:.:.:.:.:.:. .:.:.:.:.:.:.:. 1|1:4:0,4:0:0:4:128:-11.8355,-1.20412,0 dDocent_Contig_2808 107 . N T 230.318 . AB=0;ABP=0;AC=6;AF=1;AN=6;AO=9;CIGAR=1X;DP=9;DPB=9;DPRA=0;EPP=22.5536;EPPR=0;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=0;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=241;QR=0;RO=0;RPL=0;RPP=22.5536;RPPR=0;RPR=9;RUN=1;SAF=0;SAP=22.5536;SAR=9;SRF=0;SRP=0;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 1/1:2:0,2:0:0:2:32:-3.03987,-0.60206,0 1/1:4:0,4:0:0:4:134:-12.3913,-1.20412,0 1/1:3:0,3:0:0:3:75:-6.99797,-0.90309,0 dDocent_Contig_2809 10 . G A 152.043 . AB=0.169492;ABP=58.9901;AC=2;AF=0.333333;AN=6;AO=10;CIGAR=1X;DP=73;DPB=73;DPRA=2.10714;EPP=24.725;EPPR=139.813;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=3.46945e-18;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=397;QR=2476;RO=63;RPL=0;RPP=24.725;RPPR=139.813;RPR=10;RUN=1;SAF=10;SAP=24.725;SAR=0;SRF=63;SRP=139.813;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:14:14,0:14:532:0:0:0,-4.21442,-48.2094 0/1:16:13,3:13:514:3:122:-6.55601,0,-41.7875 0/1:43:36,7:36:1430:7:275:-12.1712,0,-116.003 dDocent_Contig_2810 17 . A G 1112.91 . AB=0.442105;ABP=5.77607;AC=3;AF=0.5;AN=6;AO=42;CIGAR=1X2M1X;DP=95;DPB=95;DPRA=0;EPP=94.2121;EPPR=118.098;GTI=0;LEN=1;MEANALT=1;MQM=47.8095;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=0;PAIREDR=0.679245;PAO=0;PQA=0;PQR=0;PRO=0;QA=1634;QR=2109;RO=53;RPL=0;RPP=94.2121;RPPR=118.098;RPR=42;RUN=1;SAF=42;SAP=94.2121;SAR=0;SRF=53;SRP=118.098;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|1:71:34,37:34:1369:37:1436:-105.641,0,-102.097 0|1:14:12,2:12:466:2:78:-3.11694,0,-38.0735 0|1:10:7,3:7:274:3:120:-8.04552,0,-22.0175 dDocent_Contig_2811 12 . T A 7148.04 . AB=0.0654685;ABP=1280.61;AC=3;AF=0.5;AN=6;AO=51;CIGAR=2X3M1X2M1X;DP=779;DPB=778.889;DPRA=0;EPP=113.755;EPPR=478.716;GTI=0;LEN=1;MEANALT=11.3333;MQM=59.5294;MQMR=58.7048;NS=3;NUMALT=4;ODDS=0;PAIRED=1;PAIREDR=0.585903;PAO=0;PQA=0;PQR=0;PRO=0;QA=1995;QR=8879;RO=227;RPL=0;RPP=113.755;RPPR=495.935;RPR=51;RUN=1;SAF=51;SAP=113.755;SAR=0;SRF=225;SRP=478.716;SRR=2;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|1:344:87,115,29,31,43:87:3386:115,29,31,43:4168,1149,1218,1717:-308.395,0,-242.527,-240.012,-182.575,-508.433,-234.826,-177.389,-417.405,-502.645,-198.257,-140.82,-380.835,-375.649,-462.463 0|1:178:59,71,8,4,20:59:2307:71,8,4,20:2488,312,158,789:-181.648,0,-167.699,-173.763,-163.428,-360.434,-186.406,-176.07,-349.84,-374.281,-135.252,-124.92,-298.688,-311.331,-318.313 0|1:257:81,87,7,16,35:81:3186:87,7,16,35:3156,277,619,1387:-230.284,0,-235.521,-231.871,-238.915,-491.48,-203.822,-210.867,-442.742,-460.722,-143.159,-150.207,-382.081,-354.032,-394.341 dDocent_Contig_2812 7 . C T 220.915 . AB=0.175;ABP=76.4061;AC=2;AF=0.333333;AN=6;AO=14;CIGAR=1X;DP=115;DPB=115;DPRA=1.14286;EPP=33.4109;EPPR=220.158;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=544;QR=3837;RO=100;RPL=0;RPP=33.4109;RPPR=220.158;RPR=14;RUN=1;SAF=14;SAP=33.4109;SAR=0;SRF=100;SRP=220.158;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:69:57,12:57:2200:12:466:-21.5211,0,-177.452 0/1:11:9,2:9:334:2:78:-4.09214,0,-27.0985 0/0:35:34,0:34:1303:0:0:0,-10.235,-117.393 dDocent_Contig_2813 144 . C T 108.791 . AB=0.170213;ABP=47.41;AC=3;AF=0.5;AN=6;AO=8;CIGAR=1X;DP=47;DPB=47;DPRA=0;EPP=20.3821;EPPR=87.6977;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=312;QR=1502;RO=39;RPL=0;RPP=20.3821;RPPR=87.6977;RPR=8;RUN=1;SAF=0;SAP=20.3821;SAR=8;SRF=0;SRP=87.6977;SRR=39;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:17:13,4:13:504:4:158:-9.48225,0,-40.5824 0/1:19:16,3:16:596:3:114:-4.91265,0,-48.2433 0/1:11:10,1:10:402:1:40:-0.684349,0,-33.2285 dDocent_Contig_2814 41 . T C 2408.75 . AB=0.623077;ABP=20.1148;AC=3;AF=0.5;AN=6;AO=81;CIGAR=1X3M1X;DP=130;DPB=130;DPRA=0;EPP=178.9;EPPR=105.07;GTI=0;LEN=1;MEANALT=1.66667;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=3158;QR=1813;RO=47;RPL=0;RPP=178.9;RPPR=105.07;RPR=81;RUN=1;SAF=81;SAP=178.9;SAR=0;SRF=47;SRP=105.07;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|1:78:26,50:26:1014:50:1944:-152.109,0,-68.4791 0|1:19:11,8:11:431:8:315:-22.9965,0,-33.425 0|1:33:10,23:10:368:23:899:-71.2916,0,-23.5293 dDocent_Contig_2815 21 . C A 6166.87 . AB=0.652733;ABP=66.0249;AC=3;AF=0.5;AN=6;AO=203;CIGAR=1X;DP=311;DPB=311;DPRA=0;EPP=443.819;EPPR=237.529;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=0.962963;PAO=0;PQA=0;PQR=0;PRO=0;QA=7949;QR=4299;RO=108;RPL=0;RPP=443.819;RPPR=237.529;RPR=203;RUN=1;SAF=203;SAP=443.819;SAR=0;SRF=108;SRP=237.529;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:144:43,101:43:1724:101:3945:-311.718,0,-112.028 0/1:51:14,37:14:551:37:1463:-116.575,0,-34.5782 0/1:116:51,65:51:2024:65:2541:-193.916,0,-147.422 dDocent_Contig_2816 1 . N G 149.672 . AB=0;ABP=0;AC=2;AF=1;AN=2;AO=4;CIGAR=1X;DP=4;DPB=4;DPRA=0;EPP=11.6962;EPPR=0;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=0;NS=1;NUMALT=1;ODDS=7.37776;PAIRED=1;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=162;QR=0;RO=0;RPL=0;RPP=11.6962;RPPR=0;RPR=4;RUN=1;SAF=4;SAP=11.6962;SAR=0;SRF=0;SRP=0;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL ./.:.:.:.:.:.:.:. ./.:.:.:.:.:.:.:. 1/1:4:0,4:0:0:4:162:-14.967,-1.20412,0 dDocent_Contig_2818 7 . C T 249.431 . AB=0.26087;ABP=25.858;AC=1;AF=0.166667;AN=6;AO=18;CIGAR=1X;DP=181;DPB=181;DPRA=1.82051;EPP=42.0968;EPPR=354.789;GTI=0;LEN=1;MEANALT=1;MQM=46;MQMR=59.3827;NS=3;NUMALT=1;ODDS=6.93889e-18;PAIRED=0.222222;PAIREDR=0.95679;PAO=0;PQA=0;PQR=0;PRO=0;QA=695;QR=6202;RO=162;RPL=0;RPP=42.0968;RPPR=354.789;RPR=18;RUN=1;SAF=18;SAP=42.0968;SAR=0;SRF=162;SRP=354.789;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:96:90,6:90:3475:6:229:0,-8.31185,-291.986 0/0:39:38,0:38:1453:0:0:0,-11.4391,-130.746 0/1:46:34,12:34:1274:12:466:-26.767,0,-100.98 dDocent_Contig_2819 142 . G T 131.95 . AB=0.166667;ABP=49.335;AC=1;AF=0.166667;AN=6;AO=8;CIGAR=1X;DP=82;DPB=82;DPRA=2.82353;EPP=20.3821;EPPR=163.699;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=320;QR=2812;RO=74;RPL=0;RPP=20.3821;RPPR=163.699;RPR=8;RUN=1;SAF=0;SAP=20.3821;SAR=8;SRF=0;SRP=163.699;SRR=74;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:48:40,8:40:1505:8:320:-14.7179,0,-121.24 0/0:11:11,0:11:431:0:0:0,-3.31133,-39.1428 0/0:23:23,0:23:876:0:0:0,-6.92369,-79.1358 dDocent_Contig_2820 71 . G A 1907.63 . AB=0.465753;ABP=4.49761;AC=3;AF=0.5;AN=6;AO=68;CIGAR=1X;DP=146;DPB=146;DPRA=0;EPP=150.67;EPPR=172.385;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=2659;QR=3008;RO=78;RPL=68;RPP=150.67;RPPR=172.385;RPR=0;RUN=1;SAF=68;SAP=150.67;SAR=0;SRF=78;SRP=172.385;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:68:33,35:33:1288:35:1389:-104.803,0,-95.7212 0/1:26:9,17:9:351:17:667:-52.5349,0,-24.1215 0/1:52:36,16:36:1369:16:603:-38.9481,0,-107.84 dDocent_Contig_2821 23 . T A 636.498 . AB=0.129412;ABP=104.405;AC=0;AF=0;AN=6;AO=11;CIGAR=1X1M2X;DP=127;DPB=127;DPRA=0;EPP=26.8965;EPPR=185.414;GTI=0;LEN=1;MEANALT=2.5;MQM=60;MQMR=60;NS=3;NUMALT=3;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=434;QR=3315;RO=84;RPL=0;RPP=26.8965;RPPR=185.414;RPR=11;RUN=1;SAF=11;SAP=26.8965;SAR=0;SRF=84;SRP=185.414;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|0:66:43,8,15,0:43:1712:8,15,0:314,601,0:-36.5735,-23.6979,-162.254,0,-115.149,-136.455,-49.5178,-164.662,-140.971,-190.484 0|0:19:10,3,2,4:10:385:3,2,4:120,77,145:-8.80883,-1.92392,-32.6388,-5.49559,-27.219,-36.506,0,-21.7144,-25.281,-30.3985 0|0:42:31,0,10,1:31:1218:0,10,1:0,402,41:-23.7886,-33.1205,-133.286,0,-100.156,-97.1455,-29.7357,-129.901,-96.7712,-129.6 dDocent_Contig_2824 29 . C G 354 . AB=0.137097;ABP=144.856;AC=2;AF=0.333334;AN=6;AO=18;CIGAR=2X2M;DP=146;DPB=146;DPRA=0;EPP=42.0968;EPPR=267.93;GTI=0;LEN=1;MEANALT=1.33333;MQM=60;MQMR=60;NS=3;NUMALT=2;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=712;QR=4871;RO=122;RPL=0;RPP=42.0968;RPPR=267.93;RPR=18;RUN=1;SAF=18;SAP=42.0968;SAR=0;SRF=122;SRP=267.93;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|1:72:57,0,15:57:2279:0,15:0,592:-31.9466,-49.1053,-236.834,0,-188.124,-183.608 0|0:22:21,0,1:21:827:0,1:0,40:0,-6.32163,-74.3489,-2.62698,-71.0535,-70.7525 0|1:52:44,6,2:44:1765:6,2:245,80:-6.97634,0,-143.619,-13.6336,-138.835,-158.45 dDocent_Contig_2825 7 . C T 48.804 . AB=0.157895;ABP=41.6397;AC=3;AF=0.5;AN=6;AO=6;CIGAR=1X;DP=38;DPB=38;DPRA=0;EPP=16.0391;EPPR=72.4974;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=228;QR=1222;RO=32;RPL=0;RPP=16.0391;RPPR=72.4974;RPR=6;RUN=1;SAF=6;SAP=16.0391;SAR=0;SRF=32;SRP=72.4974;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:12:10,2:10:377:2:76:-3.60231,0,-30.669 0/1:17:15,2:15:573:2:74:-1.90792,0,-46.7928 0/1:9:7,2:7:272:2:78:-4.6942,0,-22.138 dDocent_Contig_2826 117 . G C 94.3827 . AB=0.384615;ABP=4.51363;AC=1;AF=0.166667;AN=6;AO=5;CIGAR=1X;DP=110;DPB=110;DPRA=0.268041;EPP=13.8677;EPPR=231.015;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=165;QR=3548;RO=105;RPL=0;RPP=13.8677;RPPR=231.015;RPR=5;RUN=1;SAF=0;SAP=13.8677;SAR=5;SRF=0;SRP=231.015;SRR=105;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:84:84,0:84:2845:0:0:0,-25.2865,-256.298 0/1:13:8,5:8:260:5:165:-11.2622,0,-19.8028 0/0:13:13,0:13:443:0:0:0,-3.91339,-40.1958 dDocent_Contig_2827 24 . G A 1179.38 . AB=0.15;ABP=598.862;AC=3;AF=0.5;AN=6;AO=84;CIGAR=1X;DP=560;DPB=560;DPRA=0;EPP=185.414;EPPR=1010.57;GTI=0;LEN=1;MEANALT=2;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=2.77556e-17;PAIRED=1;PAIREDR=0.987069;PAO=0;PQA=0;PQR=0;PRO=0;QA=3207;QR=18421;RO=464;RPL=0;RPP=185.414;RPPR=1010.57;RPR=84;RUN=1;SAF=84;SAP=185.414;SAR=0;SRF=464;SRP=1010.57;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:332:268,57:268:10614:57:2187:-98.8295,0,-856.382 0/1:91:79,10:79:3125:10:392:-8.48842,0,-254.193 0/1:137:117,17:117:4682:17:628:-16.1434,0,-380.591 dDocent_Contig_2828 11 . C T 260.731 . AB=0.158333;ABP=124.685;AC=3;AF=0.5;AN=6;AO=19;CIGAR=1X;DP=120;DPB=120;DPRA=0;EPP=44.2683;EPPR=222.329;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=732;QR=4049;RO=101;RPL=0;RPP=44.2683;RPPR=222.329;RPR=19;RUN=1;SAF=19;SAP=44.2683;SAR=0;SRF=101;SRP=222.329;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:53:46,7:46:1835:7:269:-8.61999,0,-149.406 0/1:20:18,2:18:732:2:77:-1.28854,0,-60.183 0/1:47:37,10:37:1482:10:386:-20.9488,0,-119.478 dDocent_Contig_2829 20 . T A 4478.95 . AB=0.230769;ABP=133.967;AC=2;AF=0.333333;AN=6;AO=48;CIGAR=2X;DP=208;DPB=208;DPRA=0;EPP=107.241;EPPR=74.6689;GTI=0;LEN=1;MEANALT=2;MQM=60;MQMR=60;NS=3;NUMALT=2;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=1886;QR=1328;RO=33;RPL=0;RPP=107.241;RPPR=74.6689;RPR=48;RUN=1;SAF=48;SAP=107.241;SAR=0;SRF=33;SRP=74.6689;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 1|0:138:23,31,84:23:927:31,84:1234,3310:-290.554,-195.869,-262.947,-25.1948,0,-76.3189 0|0:25:6,4,15:6:238:4,15:148,589:-46.6542,-36.3592,-54.7468,0,-7.51118,-15.0911 1|0:45:4,13,28:4:163:13,28:504,1089:-116.21,-76.0138,-85.55,-27.9336,0,-32.9567 dDocent_Contig_2830 7 . T C 26294.4 . AB=0.415925;ABP=134.093;AC=3;AF=0.5;AN=6;AO=888;CIGAR=1X2M;DP=2135;DPB=2135;DPRA=0;EPP=1931.28;EPPR=1069.2;GTI=0;LEN=1;MEANALT=12.3333;MQM=59.1059;MQMR=59.8819;NS=3;NUMALT=3;ODDS=0;PAIRED=0.953829;PAIREDR=0.985743;PAO=0;PQA=0;PQR=0;PRO=0;QA=34001;QR=18604;RO=491;RPL=0;RPP=1931.28;RPPR=1069.2;RPR=888;RUN=1;SAF=888;SAP=1931.28;SAR=0;SRF=491;SRP=1069.2;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|1:1035:194,114,159,457:194:7367:114,159,457:4300,6070,17507:-1374.07,-1080.28,-1649.97,-934.483,-1186.31,-1490.63,0,-251.825,-106.025,-466.439 0|1:366:96,28,65,129:96:3616:28,65,129:1062,2382,4937:-375.377,-317.193,-605.074,-210.687,-419.913,-487.428,0,-209.229,-102.723,-257.479 0|1:734:201,53,111,302:201:7621:53,111,302:1990,4235,11557:-885.516,-783.009,-1391.88,-598.588,-1060.4,-1190,0,-461.815,-277.394,-533.918 dDocent_Contig_2831 7 . C A 117.385 . AB=0.175;ABP=39.7082;AC=1;AF=0.166667;AN=6;AO=7;CIGAR=1M2X1M1X;DP=145;DPB=143.8;DPRA=0.761905;EPP=18.2106;EPPR=280.959;GTI=0;LEN=1;MEANALT=3;MQM=57;MQMR=60;NS=3;NUMALT=3;ODDS=0;PAIRED=0;PAIREDR=0.992188;PAO=0;PQA=0;PQR=0;PRO=0;QA=271;QR=4894;RO=128;RPL=0;RPP=18.2106;RPPR=280.959;RPR=7;RUN=1;SAF=7;SAP=18.2106;SAR=0;SRF=128;SRP=280.959;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|0:86:81,0,0,3:81:3102:0,0,3:0,0,117:0,-24.3834,-278.993,-24.3834,-278.993,-278.993,-14.7029,-269.375,-269.375,-268.472 0|1:40:29,7,2,2:29:1106:7,2,2:271,66,58:-13.5623,0,-88.6904,-17.0285,-85.5298,-107.172,-17.6925,-86.1881,-103.164,-107.83 0|0:19:18,0,0,1:18:686:0,0,1:0,0,39:0,-5.41854,-61.6848,-5.41854,-61.6848,-61.6848,-1.82301,-58.4785,-58.4785,-58.1774 dDocent_Contig_2832 69 . C T 627.369 . AB=0.313131;ABP=33.038;AC=3;AF=0.5;AN=6;AO=31;CIGAR=1X;DP=99;DPB=99;DPRA=0;EPP=70.3259;EPPR=148.499;GTI=0;LEN=1;MEANALT=1.33333;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=1076;QR=2257;RO=67;RPL=31;RPP=70.3259;RPPR=148.499;RPR=0;RUN=1;SAF=31;SAP=70.3259;SAR=0;SRF=67;SRP=148.499;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:34:24,10:24:803:10:348:-21.421,0,-62.3443 0/1:16:9,7:9:302:7:241:-17.2063,0,-22.6898 0/1:49:34,14:34:1152:14:487:-29.6325,0,-89.4657 dDocent_Contig_2833 121 . C T 3827.92 . AB=0.837607;ABP=118.841;AC=4;AF=0.666667;AN=6;AO=139;CIGAR=1X;DP=159;DPB=159;DPRA=0;EPP=304.845;EPPR=46.4397;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=4713;QR=653;RO=20;RPL=0;RPP=304.845;RPPR=46.4397;RPR=139;RUN=1;SAF=0;SAP=304.845;SAR=139;SRF=0;SRP=46.4397;SRR=20;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:76:11,65:11:364:65:2209:-176.199,0,-10.201 1/1:42:1,41:1:35:41:1389:-121.805,-9.14463,0 0/1:41:8,33:8:254:33:1115:-88.3116,0,-10.8293 dDocent_Contig_2834 7 . C T 184.949 . AB=0.102088;ABP=595.752;AC=3;AF=0.5;AN=6;AO=44;CIGAR=1X;DP=431;DPB=431;DPRA=0;EPP=98.5551;EPPR=834.684;GTI=0;LEN=1;MEANALT=1.66667;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=1687;QR=14677;RO=383;RPL=0;RPP=98.5551;RPPR=834.684;RPR=44;RUN=1;SAF=44;SAP=98.5551;SAR=0;SRF=383;SRP=834.684;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:206:183,20:183:7049:20:767:-8.09511,0,-573.035 0/1:74:66,7:66:2511:7:265:-1.84736,0,-203.832 0/1:151:134,17:134:5117:17:655:-13.8311,0,-415.08 dDocent_Contig_2835 23 . G A 141.283 . AB=0.181818;ABP=51.3749;AC=3;AF=0.5;AN=6;AO=10;CIGAR=1X;DP=55;DPB=55;DPRA=0;EPP=24.725;EPPR=100.727;GTI=0;LEN=1;MEANALT=1;MQM=58.2;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=390;QR=1764;RO=45;RPL=0;RPP=24.725;RPPR=100.727;RPR=10;RUN=1;SAF=10;SAP=24.725;SAR=0;SRF=45;SRP=100.727;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:25:22,3:22:862:3:115:-3.16364,0,-70.3655 0/1:13:11,2:11:438:2:80:-3.6784,0,-35.8624 0/1:17:12,5:12:464:5:195:-12.7963,0,-36.9899 dDocent_Contig_2836 5 . T C 99.7469 . AB=0;ABP=0;AC=6;AF=1;AN=6;AO=3;CIGAR=1X13I3M1X4M;DP=29;DPB=256.667;DPRA=6.28571;EPP=9.52472;EPPR=0;GTI=0;LEN=1;MEANALT=10;MQM=60;MQMR=0;NS=3;NUMALT=1;ODDS=0;PAIRED=0;PAIREDR=0;PAO=745.5;PQA=28384;PQR=30159;PRO=793.5;QA=106;QR=0;RO=0;RPL=0;RPP=9.52472;RPPR=0;RPR=3;RUN=1;SAF=3;SAP=9.52472;SAR=0;SRF=0;SRP=0;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 1|1:5:0,0:0:0:0:0:0,0,0 1|1:22:0,3:0:0:3:106:-9.49603,-0.90309,0 1|1:2:0,0:0:0:0:0:0,0,0 dDocent_Contig_2837 163 . T C 810.124 . AB=0.315315;ABP=35.8954;AC=3;AF=0.5;AN=6;AO=35;CIGAR=1X;DP=111;DPB=111;DPRA=0;EPP=79.0118;EPPR=168.042;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=1322;QR=2977;RO=76;RPL=35;RPP=79.0118;RPPR=168.042;RPR=0;RUN=1;SAF=0;SAP=79.0118;SAR=35;SRF=0;SRP=168.042;SRR=76;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:57:35,22:35:1369:22:862:-60.7295,0,-106.317 0/1:14:9,5:9:329:5:174:-11.7781,0,-25.7329 0/1:40:32,8:32:1279:8:286:-14.0277,0,-103.335 dDocent_Contig_2838 8 . G A 1977.56 . AB=0.152339;ABP=967.817;AC=3;AF=0.5;AN=6;AO=140;CIGAR=1X;DP=919;DPB=919;DPRA=0;EPP=307.016;EPPR=1694.59;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=5.55112e-17;PAIRED=0.978571;PAIREDR=0.962773;PAO=0;PQA=0;PQR=0;PRO=0;QA=5324;QR=29639;RO=779;RPL=0;RPP=307.016;RPPR=1694.59;RPR=140;RUN=1;SAF=140;SAP=307.016;SAR=0;SRF=779;SRP=1694.59;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:395:342,53:342:13040:53:2002:-61.5098,0,-1054.13 0/1:185:148,37:148:5585:37:1409:-71.4015,0,-446.958 0/1:339:289,50:289:11014:50:1913:-70.3672,0,-888.814 dDocent_Contig_2839 7 . T C 7966.06 . AB=0.0555556;ABP=1145.69;AC=5;AF=0.833334;AN=6;AO=37;CIGAR=2X5M1X2M1X3M;DP=666;DPB=666.214;DPRA=0;EPP=83.3548;EPPR=59.4686;GTI=0;LEN=1;MEANALT=24.6667;MQM=51.1892;MQMR=60;NS=3;NUMALT=7;ODDS=2.22045e-16;PAIRED=0.459459;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=1350;QR=1019;RO=26;RPL=0;RPP=83.3548;RPPR=59.4686;RPR=37;RUN=1;SAF=37;SAP=83.3548;SAR=0;SRF=26;SRP=59.4686;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 1|1:319:11,100,19,23,19,21,22,22:11:436:100,19,23,19,21,22,22:3908,716,876,741,655,822,857:-353.631,-35.9657,-41.7532,-299.086,-13.9995,-329.257,-285.087,0,-263.121,-314.053,-296.034,-10.9469,-274.068,-260.069,-326.205,-308.931,-23.8468,-286.965,-272.966,-283.913,-338.499,-290.164,-5.07724,-268.198,-254.199,-265.146,-278.043,-319.431,-286.684,-1.59662,-264.718,-250.719,-261.666,-274.563,-255.796,-315.951 1|0:122:4,30,4,9,6,8,6,32:4:157:30,4,9,6,8,6,32:1156,150,349,233,270,217,1230:-180.641,-87.1941,-91.0772,-169.558,-87.8208,-181.267,-153.169,-71.4311,-153.796,-163.373,-162.699,-80.9614,-163.326,-146.937,-173.806,-161.318,-79.582,-161.945,-145.556,-155.086,-171.824,-164.135,-82.3975,-164.761,-148.372,-157.902,-156.522,-175.242,-81.7421,0,-82.3688,-65.979,-75.5094,-74.1302,-76.9455,-85.0231 1|1:225:11,75,23,9,0,3,9,15:11:426:75,23,9,0,3,9,15:2935,821,349,0,93,311,590:-267.853,-29.8351,-42.2551,-206.332,0,-234.405,-242.49,-36.1566,-212.654,-274.776,-271.165,-64.8323,-241.328,-277.486,-306.16,-264.511,-58.1794,-234.675,-270.832,-299.507,-298.604,-247.31,-40.978,-217.474,-253.631,-282.306,-275.653,-279.597,-222.633,-16.2985,-192.797,-228.954,-257.629,-250.975,-233.774,-253.113 dDocent_Contig_2840 14 . G A 291.9 . AB=0.311111;ABP=16.956;AC=3;AF=0.5;AN=6;AO=14;CIGAR=1M1I3M1X;DP=45;DPB=48;DPRA=0;EPP=33.4109;EPPR=68.1545;GTI=0;LEN=1;MEANALT=1.33333;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=525;QR=1177;RO=30;RPL=0;RPP=33.4109;RPPR=68.1545;RPR=14;RUN=1;SAF=14;SAP=33.4109;SAR=0;SRF=30;SRP=68.1545;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|1:17:10,7:10:386:7:265:-19.0941,0,-29.9745 0|1:16:13,3:13:516:3:109:-5.35141,0,-41.9711 0|1:12:7,4:7:275:4:151:-10.2674,0,-21.4258 dDocent_Contig_2843 8 . G A 38.795 . AB=0.121951;ABP=53.9075;AC=1;AF=0.166667;AN=6;AO=6;CIGAR=2M1X16M;DP=101;DPB=101.316;DPRA=0.7625;EPP=16.0391;EPPR=198.443;GTI=0;LEN=1;MEANALT=1.5;MQM=60;MQMR=60;NS=3;NUMALT=2;ODDS=0;PAIRED=1;PAIREDR=0.988889;PAO=0;PQA=0;PQR=0;PRO=0;QA=231;QR=3466;RO=90;RPL=0;RPP=16.0391;RPPR=198.443;RPR=6;RUN=1;SAF=6;SAP=16.0391;SAR=0;SRF=90;SRP=198.443;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|1:41:35,0,5:35:1352:0,5:0,194:-5.40232,-15.9384,-126.974,0,-111.034,-109.529 0|0:20:19,0,1:19:726:0,1:0,37:0,-5.71957,-65.2971,-2.32277,-62.2707,-61.9697 0|0:40:36,3,0:36:1388:3,0:105,0:0,-6.55819,-119.654,-10.8371,-120.557,-124.944 dDocent_Contig_2844 12 . A G 2729.4 . AB=0.46798;ABP=4.81808;AC=3;AF=0.5;AN=6;AO=95;CIGAR=1X;DP=203;DPB=203;DPRA=0;EPP=209.3;EPPR=237.529;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=1.38778e-17;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=3764;QR=4289;RO=108;RPL=0;RPP=209.3;RPPR=237.529;RPR=95;RUN=1;SAF=95;SAP=209.3;SAR=0;SRF=108;SRP=237.529;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:96:59,37:59:2362:37:1467:-103.384,0,-183.834 0/1:30:12,18:12:477:18:712:-55.369,0,-34.2491 0/1:77:37,40:37:1450:40:1585:-119.71,0,-107.567 dDocent_Contig_2845 108 . A G 141.438 . AB=0.3125;ABP=12.7819;AC=3;AF=0.5;AN=6;AO=10;CIGAR=1X;DP=32;DPB=32;DPRA=0;EPP=24.725;EPPR=50.7827;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=315;QR=700;RO=22;RPL=0;RPP=24.725;RPPR=50.7827;RPR=10;RUN=1;SAF=0;SAP=24.725;SAR=10;SRF=0;SRP=50.7827;SRR=22;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:8:6,2:6:196:2:60:-3.29073,0,-15.5538 0/1:9:7,2:7:209:2:66:-3.55909,0,-16.3949 0/1:15:9,6:9:295:6:189:-12.8056,0,-22.3549 dDocent_Contig_2846 8 . G C 43448.1 . AB=0.904215;ABP=373.417;AC=5;AF=0.833333;AN=6;AO=1322;CIGAR=1X;DP=1391;DPB=1391;DPRA=0;EPP=2873.7;EPPR=152.842;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=50904;QR=2662;RO=69;RPL=0;RPP=2873.7;RPPR=152.842;RPR=1322;RUN=1;SAF=1322;SAP=2873.7;SAR=0;SRF=69;SRP=152.842;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 1/1:712:36,676:36:1393:676:26060:-2218.18,-88.682,0 0/1:261:25,236:25:960:236:9050:-735.66,0,-8.14519 1/1:418:8,410:8:309:410:15794:-1392.49,-97.6576,0 dDocent_Contig_2847 7 . C A 3871.1 . AB=0.527132;ABP=4.65995;AC=3;AF=0.5;AN=6;AO=136;CIGAR=1X;DP=258;DPB=258;DPRA=0;EPP=298.331;EPPR=267.93;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=5217;QR=4709;RO=122;RPL=0;RPP=298.331;RPPR=267.93;RPR=136;RUN=1;SAF=136;SAP=298.331;SAR=0;SRF=122;SRP=267.93;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:167:80,87:80:3108:87:3343:-250.736,0,-229.596 0/1:22:10,12:10:381:12:462:-35.308,0,-28.0219 0/1:69:32,37:32:1220:37:1412:-106.589,0,-89.3225 dDocent_Contig_2850 7 . C T 128.298 . AB=0.272727;ABP=12.8806;AC=1;AF=0.166667;AN=6;AO=6;CIGAR=1X;DP=61;DPB=61;DPRA=1.12821;EPP=16.0391;EPPR=122.441;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=229;QR=2122;RO=55;RPL=0;RPP=16.0391;RPPR=122.441;RPR=6;RUN=1;SAF=6;SAP=16.0391;SAR=0;SRF=55;SRP=122.441;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:22:16,6:16:620:6:229:-14.3526,0,-49.5173 0/0:16:16,0:16:619:0:0:0,-4.81648,-56.05 0/0:23:23,0:23:883:0:0:0,-6.92369,-79.7896 dDocent_Contig_2851 8 . G A 181.607 . AB=0.204082;ABP=40.2799;AC=1;AF=0.166667;AN=6;AO=12;CIGAR=1X;DP=159;DPB=159;DPRA=3.91667;EPP=29.068;EPPR=322.217;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=456;QR=5596;RO=147;RPL=0;RPP=29.068;RPPR=322.217;RPR=12;RUN=1;SAF=12;SAP=29.068;SAR=0;SRF=147;SRP=322.217;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:92:90,2:90:3431:2:74:0,-20.6693,-301.898 0/0:18:18,0:18:668:0:0:0,-5.41854,-60.4495 0/1:49:39,10:39:1497:10:382:-19.9846,0,-120.253 dDocent_Contig_2852 10 . C T 423.866 . AB=0.205607;ABP=83.5577;AC=3;AF=0.5;AN=6;AO=22;CIGAR=1X;DP=107;DPB=107;DPRA=0;EPP=50.7827;EPPR=187.585;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=59.8941;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=0.988235;PAO=0;PQA=0;PQR=0;PRO=0;QA=878;QR=3420;RO=85;RPL=0;RPP=50.7827;RPPR=187.585;RPR=22;RUN=1;SAF=22;SAP=50.7827;SAR=0;SRF=85;SRP=187.585;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:58:47,11:47:1887:11:443:-22.7645,0,-152.568 0/1:24:19,5:19:774:5:195:-10.6957,0,-62.754 0/1:25:19,6:19:759:6:240:-14.4493,0,-61.0698 dDocent_Contig_2853 48 . T C 3864.7 . AB=0.727273;ABP=47.4268;AC=4;AF=0.666667;AN=6;AO=121;CIGAR=1X;DP=152;DPB=152;DPRA=0;EPP=265.758;EPPR=70.3259;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=4823;QR=1237;RO=31;RPL=0;RPP=265.758;RPPR=70.3259;RPR=121;RUN=1;SAF=121;SAP=265.758;SAR=0;SRF=31;SRP=70.3259;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:59:19,40:19:755:40:1591:-125.658,0,-50.51 0/1:40:8,32:8:320:32:1276:-103.065,0,-17.1249 1/1:53:4,49:4:162:49:1956:-161.27,-0.987635,0 dDocent_Contig_2855 20 . C T 57.6903 . AB=0.1;ABP=155.882;AC=1;AF=0.166667;AN=6;AO=18;CIGAR=1X;DP=228;DPB=228;DPRA=0;EPP=42.0968;EPPR=459.02;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=711;QR=8441;RO=210;RPL=0;RPP=42.0968;RPPR=459.02;RPR=18;RUN=1;SAF=18;SAP=42.0968;SAR=0;SRF=210;SRP=459.02;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:110:99,11:99:3948:11:445:-7.29191,0,-322.189 0/0:36:34,2:34:1377:2:65:0,-4.66631,-118.012 0/0:82:77,5:77:3116:5:201:0,-6.21394,-262.032 dDocent_Contig_2857 12 . C T 7452.6 . AB=0.045045;ABP=202.571;AC=0;AF=0;AN=6;AO=6;CIGAR=1X3M2X;DP=256;DPB=256;DPRA=0;EPP=16.0391;EPPR=42.0968;GTI=0;LEN=1;MEANALT=3;MQM=60;MQMR=60;NS=3;NUMALT=2;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=235;QR=699;RO=18;RPL=0;RPP=16.0391;RPPR=42.0968;RPR=6;RUN=1;SAF=6;SAP=16.0391;SAR=0;SRF=18;SRP=42.0968;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|0:145:2,1,136:2:80:1,136:40,5294:-468.777,-466.084,-472.373,-34.3416,-37.6413,0 0|0:43:10,3,30:10:379:3,30:119,1168:-92.9661,-86.1797,-116.345,0,-21.2573,-22.0265 0|0:68:6,2,58:6:240:2,58:76,2294:-186.976,-182.549,-201.718,0,-13.551,-2.32096 dDocent_Contig_2858 7 . T C 10548.3 . AB=0.236915;ABP=439.47;AC=6;AF=1;AN=6;AO=172;CIGAR=1X2M;DP=726;DPB=726;DPRA=0;EPP=376.504;EPPR=131.127;GTI=0;LEN=1;MEANALT=7.33333;MQM=46.8488;MQMR=59.4915;NS=3;NUMALT=4;ODDS=0;PAIRED=0.906977;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=5946;QR=2257;RO=59;RPL=0;RPP=376.504;RPPR=131.127;RPR=172;RUN=1;SAF=172;SAP=376.504;SAR=0;SRF=59;SRP=131.127;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 1|1:267:33,49,26,75,76:33:1264:49,26,75,76:1876,981,2864,2644:-330.12,-187.316,-275.452,-259.657,-209.805,-354.717,-105.065,-55.2115,-127.555,-185.375,-132.099,-82.2485,-154.588,0,-212.105 1|1:186:21,35,17,71,36:21:801:35,17,71,36:1330,644,2695,1286:-255.05,-154.857,-210.036,-208.57,-167.771,-269.168,-40.7992,0,-53.7141,-85.1432,-159.52,-118.722,-172.434,-4.66702,-214.397 1|1:273:5,71,30,87,60:5:192:71,30,87,60:2691,1159,3322,2016:-475.178,-256.051,-250.439,-381.488,-176.616,-388.218,-204.876,0,-125.441,-194.449,-318.745,-113.879,-239.312,-62.7057,-316.444 dDocent_Contig_2859 104 . N C 66.4848 . AB=0;ABP=0;AC=2;AF=1;AN=2;AO=2;CIGAR=3X2I1X;DP=2;DPB=3;DPRA=0;EPP=7.35324;EPPR=0;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=0;NS=1;NUMALT=1;ODDS=5.99146;PAIRED=1;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=70;QR=0;RO=0;RPL=0;RPP=7.35324;RPPR=0;RPR=2;RUN=1;SAF=0;SAP=7.35324;SAR=2;SRF=0;SRP=0;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL .:.:.:.:.:.:.:. .:.:.:.:.:.:.:. 1|1:2:0,2:0:0:2:70:-6.6474,-0.60206,0 dDocent_Contig_2860 12 . G A 67775.6 . AB=0.593296;ABP=206.005;AC=6;AF=1;AN=6;AO=1593;CIGAR=1X4M;DP=2685;DPB=2685;DPRA=0;EPP=3462.17;EPPR=100.727;GTI=0;LEN=1;MEANALT=11.3333;MQM=59.7721;MQMR=60;NS=3;NUMALT=4;ODDS=0;PAIRED=0.988073;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=61984;QR=1711;RO=45;RPL=0;RPP=3462.17;RPPR=100.727;RPR=1593;RUN=1;SAF=1593;SAP=3462.17;SAR=0;SRF=45;SRP=100.727;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 1|1:1419:28,295,62,73,832:28:1070:295,62,73,832:11578,2438,2898,32418:-3518.9,-2575.44,-2574.43,-3326.9,-2462.81,-3396.03,-3289.63,-2425.53,-3176.99,-3355.44,-864.097,0,-751.466,-714.186,-701.431 1|1:430:5,114,23,25,232:5:188:114,23,25,232:4441,910,993,8945:-1082.29,-718.816,-699.902,-1008.99,-659.418,-1017.47,-1002.04,-652.47,-942.645,-1009.92,-349.572,0,-290.173,-283.225,-295.135 1|1:836:12,167,21,47,529:12:453:167,21,47,529:6449,824,1846,20621:-2181.89,-1657.55,-1644.4,-2117.77,-1626.94,-2148.57,-2033.68,-1542.85,-2003.07,-2056.66,-490.828,0,-460.213,-376.129,-368.707 dDocent_Contig_2863 21 . A T 61.9338 . AB=0.05;ABP=38.1882;AC=0;AF=0;AN=6;AO=3;CIGAR=1M1X6M;DP=95;DPB=94.5;DPRA=0.489583;EPP=9.52472;EPPR=194.1;GTI=0;LEN=1;MEANALT=1.5;MQM=60;MQMR=60;NS=3;NUMALT=2;ODDS=3.46945e-18;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=109;QR=3465;RO=88;RPL=0;RPP=9.52472;RPPR=194.1;RPR=3;RUN=1;SAF=3;SAP=9.52472;SAR=0;SRF=88;SRP=194.1;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|0:48:48,0,0:48:1891:0,0:0,0:0,-14.4494,-170.416,-14.4494,-170.416,-170.416 0|0:27:25,0,2:25:982:0,2:0,68:0,-7.52575,-88.3427,-1.67318,-82.8337,-82.2317 0|0:20:15,4,1:15:592:4,1:153,41:-8.01725,0,-47.4929,-9.14317,-45.312,-57.563 dDocent_Contig_2864 10 . T C 372.201 . AB=0.0884956;ABP=169.214;AC=1;AF=0.166667;AN=6;AO=10;CIGAR=1X3M;DP=257;DPB=257;DPRA=0.392361;EPP=24.725;EPPR=461.191;GTI=0;LEN=1;MEANALT=3;MQM=60;MQMR=60;NS=3;NUMALT=3;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=401;QR=8429;RO=211;RPL=0;RPP=24.725;RPPR=461.191;RPR=10;RUN=1;SAF=10;SAP=24.725;SAR=0;SRF=211;SRP=461.191;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|0:144:136,2,5,0:136:5430:2,5,0:82,205,0:0,-34.1707,-480.761,-24.0135,-464.442,-469.705,-40.9401,-481.363,-471.21,-488.131 0|1:36:24,3,2,7:24:962:3,2,7:119,82,280:-15.8395,-13.2698,-91.6221,-16.2942,-85.7564,-94.9499,0,-69.4601,-72.4866,-77.1482 0|0:77:51,11,12,3:51:2037:11,12,3:439,488,121:-24.9035,-4.10437,-168.555,0,-131.612,-164.154,-30.2817,-161.892,-157.792,-197.143 dDocent_Contig_2865 134 . G C 90.1728 . AB=0.1375;ABP=94.3207;AC=2;AF=0.333333;AN=6;AO=13;CIGAR=1X;DP=185;DPB=185;DPRA=0;EPP=31.2394;EPPR=376.504;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=473;QR=6518;RO=172;RPL=0;RPP=31.2394;RPPR=376.504;RPR=13;RUN=1;SAF=0;SAP=31.2394;SAR=13;SRF=0;SRP=376.504;SRR=172;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:105:103,2:103:3944:2:78:0,-24.2047,-347.652 0/1:32:29,3:29:1051:3:118:-1.36993,0,-85.2471 0/1:48:40,8:40:1523:8:277:-10.8085,0,-122.893 dDocent_Contig_2866 106 . N G 141.598 . AB=0;ABP=0;AC=4;AF=1;AN=4;AO=4;CIGAR=4X7I1X1M2X;DP=4;DPB=7.5;DPRA=0;EPP=11.6962;EPPR=0;GTI=0;LEN=1;MEANALT=1;MQM=59;MQMR=0;NS=2;NUMALT=1;ODDS=0;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=146;QR=0;RO=0;RPL=0;RPP=11.6962;RPPR=0;RPR=4;RUN=1;SAF=4;SAP=11.6962;SAR=0;SRF=0;SRP=0;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 1|1:3:0,3:0:0:3:110:-10.2595,-0.90309,0 .:.:.:.:.:.:.:. 1|1:1:0,1:0:0:1:36:-3.59783,-0.30103,0 dDocent_Contig_2867 49 . T C 252.977 . AB=0.289474;ABP=17.6392;AC=2;AF=0.333333;AN=6;AO=11;CIGAR=1X;DP=55;DPB=55;DPRA=1.11765;EPP=26.8965;EPPR=98.5551;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=0.545455;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=439;QR=1747;RO=44;RPL=0;RPP=26.8965;RPPR=98.5551;RPR=11;RUN=1;SAF=11;SAP=26.8965;SAR=0;SRF=44;SRP=98.5551;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:29:20,9:20:808:9:360:-24.0323,0,-64.3075 0/1:9:7,2:7:274:2:79:-4.78797,0,-22.3166 0/0:17:17,0:17:665:0:0:0,-5.11751,-60.1788 dDocent_Contig_2868 108 . A G 106.485 . AB=0.714286;ABP=5.80219;AC=1;AF=0.166667;AN=6;AO=10;CIGAR=1X3M1X;DP=60;DPB=60;DPRA=1.26471;EPP=24.725;EPPR=109.412;GTI=0;LEN=1;MEANALT=1.5;MQM=41.4;MQMR=60;NS=3;NUMALT=1;ODDS=3.46945e-18;PAIRED=0.5;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=328;QR=1550;RO=49;RPL=0;RPP=24.725;RPPR=109.412;RPR=10;RUN=1;SAF=0;SAP=24.725;SAR=10;SRF=0;SRP=109.412;SRR=49;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|0:36:30,5:30:936:5:160:0,-0.0731242,-73.7404 0|1:7:2,5:2:64:5:168:-12.4696,0,-3.97134 0|0:17:17,0:17:550:0:0:0,-5.11751,-49.8114 dDocent_Contig_2869 126 . C T 121.925 . AB=0.285714;ABP=11.386;AC=1;AF=0.166667;AN=6;AO=9;CIGAR=1X;DP=126;DPB=126;DPRA=1.83333;EPP=22.5536;EPPR=257.073;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=0;PAIREDR=0.726496;PAO=0;PQA=0;PQR=0;PRO=0;QA=332;QR=4117;RO=117;RPL=0;RPP=22.5536;RPPR=257.073;RPR=9;RUN=1;SAF=0;SAP=22.5536;SAR=9;SRF=0;SRP=257.073;SRR=117;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:78:75,3:75:2622:3:110:0,-13.2193,-225.95 0/0:27:27,0:27:953:0:0:0,-8.12781,-86.0808 0/1:21:15,6:15:542:6:222:-14.0164,0,-42.7949 dDocent_Contig_2871 32 . A T 380.315 . AB=0.313725;ABP=18.3809;AC=2;AF=0.333333;AN=6;AO=16;CIGAR=1X2M2X1M1X2M5I2M;DP=62;DPB=69.2727;DPRA=2.31818;EPP=37.7539;EPPR=100.727;GTI=0;LEN=1;MEANALT=1.5;MQM=57.125;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=612;QR=1741;RO=45;RPL=0;RPP=37.7539;RPPR=100.727;RPR=16;RUN=1;SAF=16;SAP=37.7539;SAR=0;SRF=45;SRP=100.727;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|1:39:23,15:23:901:15:573:-39.5516,0,-69.5851 0|1:12:11,1:11:419:1:39:-0.284205,0,-34.4436 0|0:11:11,0:11:421:0:0:0,-3.31133,-38.2416 dDocent_Contig_2872 14 . C A 2223.35 . AB=0.172222;ABP=170.986;AC=0;AF=0;AN=6;AO=31;CIGAR=1X2M1X2M;DP=247;DPB=247;DPRA=0;EPP=70.3259;EPPR=150.67;GTI=0;LEN=1;MEANALT=3.5;MQM=60;MQMR=60;NS=3;NUMALT=4;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=1217;QR=2663;RO=68;RPL=0;RPP=70.3259;RPPR=150.67;RPR=31;RUN=1;SAF=31;SAP=70.3259;SAR=0;SRF=68;SRP=150.67;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|0:137:34,26,15,28,34:34:1346:26,15,28,34:1019,600,1100,1376:-103.224,-29.6681,-132.619,-64.0345,-91.0214,-170.297,-22.999,-49.9858,-84.3523,-125.348,0,-26.9874,-61.3544,-20.3183,-100.544 0|0:43:11,5,0,18,9:11:435:5,0,18,9:198,0,720,362:-55.9976,-43.0131,-77.3059,-59.309,-78.8111,-95.1073,0,-19.5014,-35.7975,-30.379,-29.4755,-48.9775,-65.2738,-5.96252,-62.5645 0|0:67:23,0,6,14,24:23:882:0,6,14,24:0,244,565,921:-68.6361,-75.5598,-147.941,-55.4312,-127.813,-126.007,-28.9793,-101.362,-81.2328,-97.1475,0,-72.3736,-52.2449,-25.7929,-65.1488 dDocent_Contig_2873 26 . G T 2743.44 . AB=0.0387597;ABP=241.384;AC=3;AF=0.5;AN=6;AO=5;CIGAR=3X3M;DP=188;DPB=188;DPRA=0;EPP=13.8677;EPPR=74.9036;GTI=0;LEN=1;MEANALT=5;MQM=60;MQMR=60;NS=3;NUMALT=5;ODDS=0;PAIRED=1;PAIREDR=0.945946;PAO=0;PQA=0;PQR=0;PRO=0;QA=197;QR=1470;RO=37;RPL=0;RPP=13.8677;RPPR=66.922;RPR=5;RUN=1;SAF=5;SAP=13.8677;SAR=0;SRF=36;SRP=74.9036;SRR=1;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 1|0:95:18,6,37,4,2,28:18:719:6,37,4,2,28:235,1440,153,81,1129:-146.752,-132.851,-190.266,-33.845,-73.7463,-81.9271,-139.619,-179.52,-80.5141,-197.636,-145.491,-185.393,-86.3859,-192.16,-204.11,-59.1037,-99.0067,0,-105.775,-111.647,-109.898 1|0:34:4,2,9,6,3,10:4:160:2,9,6,3,10:80,356,241,116,407:-48.4899,-43.1039,-55.6819,-20.3976,-26.9873,-30.8681,-29.8343,-36.4243,-13.7181,-41.2083,-40.1679,-46.7578,-24.0518,-33.4885,-52.4447,-16.1167,-22.707,0,-9.43664,-19.7713,-26.2871 1|0:59:15,2,19,0,0,23:15:591:2,19,0,0,23:80,766,0,0,907:-84.6254,-82.5507,-130.567,-25.9974,-68.0265,-68.8974,-89.1409,-131.169,-74.617,-137.76,-89.1409,-131.169,-74.617,-137.76,-137.76,-14.5281,-56.5541,0,-63.1444,-63.1444,-56.2207 dDocent_Contig_2874 22 . G A 13375.9 . AB=0.909091;ABP=130.93;AC=5;AF=0.833333;AN=6;AO=425;CIGAR=1X;DP=458;DPB=458;DPRA=0;EPP=925.886;EPPR=72.4974;GTI=0;LEN=1;MEANALT=1.33333;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=16036;QR=1170;RO=32;RPL=0;RPP=925.886;RPPR=72.4974;RPR=425;RUN=1;SAF=425;SAP=925.886;SAR=0;SRF=32;SRP=72.4974;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 1/1:286:22,264:22:794:264:9922:-820.894,-14.3217,0 1/1:84:2,81:2:76:81:3084:-270.569,-18.0173,0 0/1:88:8,80:8:300:80:3030:-246.378,0,-0.862052 dDocent_Contig_2875 15 . C T 86.5988 . AB=0.10101;ABP=276.791;AC=1;AF=0.166667;AN=6;AO=31;CIGAR=1X;DP=343;DPB=343;DPRA=0;EPP=70.3259;EPPR=680.51;GTI=0;LEN=1;MEANALT=1;MQM=59.7097;MQMR=59.8237;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=1190;QR=12470;RO=312;RPL=0;RPP=70.3259;RPPR=680.51;RPR=31;RUN=1;SAF=31;SAP=70.3259;SAR=0;SRF=312;SRP=680.51;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:198:178,20:178:7151:20:772:-10.1827,0,-583.554 0/0:56:52,4:52:2068:4:154:0,-2.62671,-172.077 0/0:89:82,7:82:3251:7:264:0,-2.676,-268.514 dDocent_Contig_2876 24 . G T 107.044 . AB=0.2;ABP=30.3709;AC=2;AF=0.333333;AN=6;AO=8;CIGAR=1X;DP=95;DPB=95;DPRA=0;EPP=20.3821;EPPR=191.928;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=0.875;PAIREDR=0.908046;PAO=0;PQA=0;PQR=0;PRO=0;QA=307;QR=3352;RO=87;RPL=0;RPP=20.3821;RPPR=191.928;RPR=8;RUN=1;SAF=8;SAP=20.3821;SAR=0;SRF=87;SRP=191.928;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:60:59,1:59:2276:1:40:0,-14.0661,-201.054 0/1:14:10,4:10:387:4:161:-10.6609,0,-30.9723 0/1:21:18,3:18:689:3:106:-3.56247,0,-56.0215 dDocent_Contig_2877 12 . C T 1311.09 . AB=0.163636;ABP=489.46;AC=3;AF=0.5;AN=6;AO=81;CIGAR=1X;DP=495;DPB=495;DPRA=0;EPP=178.9;EPPR=902;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=59.9855;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=0.997585;PAO=0;PQA=0;PQR=0;PRO=0;QA=3164;QR=16438;RO=414;RPL=0;RPP=178.9;RPPR=902;RPR=81;RUN=1;SAF=81;SAP=178.9;SAR=0;SRF=414;SRP=902;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:220:179,41:179:7106:41:1590:-77.1145,0,-573 0/1:148:128,20:128:5065:20:780:-25.9692,0,-411.209 0/1:127:107,20:107:4267:20:794:-33.5483,0,-345.773 dDocent_Contig_2878 14 . C T 5425.69 . AB=0.807229;ABP=71.0585;AC=4;AF=0.666667;AN=6;AO=176;CIGAR=1X;DP=201;DPB=201;DPRA=0;EPP=385.189;EPPR=55.1256;GTI=0;LEN=1;MEANALT=1.33333;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=6663;QR=929;RO=24;RPL=0;RPP=385.189;RPPR=55.1256;RPR=176;RUN=1;SAF=176;SAP=385.189;SAR=0;SRF=24;SRP=55.1256;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 1/1:118:8,109:8:321:109:4128:-342.345,-6.35379,0 0/1:22:4,18:4:160:18:684:-55.2662,0,-8.16026 0/1:61:12,49:12:448:49:1851:-148.48,0,-22.2924 dDocent_Contig_2879 18 . A G 2102.16 . AB=0.613445;ABP=16.3128;AC=3;AF=0.5;AN=6;AO=73;CIGAR=1X2M1X;DP=119;DPB=119;DPRA=0;EPP=161.528;EPPR=102.898;GTI=0;LEN=1;MEANALT=1;MQM=59.5479;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=0.986301;PAIREDR=0.978261;PAO=0;PQA=0;PQR=0;PRO=0;QA=2797;QR=1807;RO=46;RPL=0;RPP=161.528;RPPR=102.898;RPR=73;RUN=1;SAF=73;SAP=161.528;SAR=0;SRF=46;SRP=102.898;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|1:77:27,50:27:1061:50:1912:-149.143,0,-72.6064 0|1:18:7,11:7:271:11:421:-31.7113,0,-19.3363 0|1:24:12,12:12:475:12:464:-34.8849,0,-35.8776 dDocent_Contig_2880 8 . C A 176.193 . AB=0.266667;ABP=17.1973;AC=1;AF=0.166667;AN=6;AO=8;CIGAR=2X;DP=142;DPB=142;DPRA=0.535714;EPP=20.3821;EPPR=291.816;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=57.6992;NS=3;NUMALT=1;ODDS=0;PAIRED=0;PAIREDR=0.977444;PAO=0;PQA=0;PQR=0;PRO=0;QA=309;QR=5104;RO=133;RPL=0;RPP=20.3821;RPPR=291.816;RPR=8;RUN=1;SAF=8;SAP=20.3821;SAR=0;SRF=133;SRP=291.816;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|1:30:22,8:22:847:8:309:-19.1422,0,-67.4854 0|0:64:64,0:64:2454:0:0:0,-19.2659,-218.138 0|0:48:47,0:47:1803:0:0:0,-14.1484,-158.908 dDocent_Contig_2882 116 . G A 377.292 . AB=0.176136;ABP=163.354;AC=1;AF=0.166667;AN=6;AO=47;CIGAR=1X3M1X;DP=364;DPB=364;DPRA=0;EPP=105.07;EPPR=680.51;GTI=0;LEN=1;MEANALT=2.66667;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=0.99359;PAO=0;PQA=0;PQR=0;PRO=0;QA=1566;QR=10101;RO=312;RPL=0;RPP=105.07;RPPR=680.51;RPR=47;RUN=1;SAF=0;SAP=105.07;SAR=47;SRF=0;SRP=680.51;SRR=312;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|1:176:144,31:144:4638:31:1019:-39.2514,0,-364.879 0|0:83:75,6:75:2463:6:208:0,-5.54167,-202.917 0|0:105:93,10:93:3000:10:339:0,-0.278047,-239.453 dDocent_Contig_2883 41 . C A 6004.52 . AB=0;ABP=0;AC=0;AF=0;AN=6;AO=5;CIGAR=1X2M1X;DP=198;DPB=198;DPRA=2.12766;EPP=13.8677;EPPR=31.2394;GTI=0;LEN=1;MEANALT=2;MQM=60;MQMR=60;NS=3;NUMALT=2;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=199;QR=519;RO=13;RPL=0;RPP=13.8677;RPPR=31.2394;RPR=5;RUN=1;SAF=5;SAP=13.8677;SAR=0;SRF=13;SRP=31.2394;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|0:100:7,5,88:7:282:5,88:199,3513:-290.46,-276.182,-297.92,-3.24426,-10.1068,0 0|0:47:0,0,46:0:0:0,46:0,1837:-165.369,-165.369,-165.369,-13.8474,-13.8474,0 0|0:51:6,0,45:6:237:0,45:0,1792:-146.146,-147.952,-167.455,0,-19.8975,-6.35114 dDocent_Contig_2884 7 . C T 213.676 . AB=0.16129;ABP=95.6831;AC=1;AF=0.166667;AN=6;AO=19;CIGAR=1X;DP=355;DPB=355;DPRA=0;EPP=44.2683;EPPR=732.625;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=6.93889e-18;PAIRED=1;PAIREDR=0.97619;PAO=0;PQA=0;PQR=0;PRO=0;QA=720;QR=12950;RO=336;RPL=0;RPP=44.2683;RPPR=732.625;RPR=19;RUN=1;SAF=19;SAP=44.2683;SAR=0;SRF=336;SRP=732.625;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:145:142,3:142:5492:3:116:0,-32.8316,-483.433 0/1:93:78,15:78:3003:15:565:-23.1915,0,-242.436 0/0:117:116,1:116:4455:1:39:0,-31.3239,-397.105 dDocent_Contig_2887 10 . G T 35.4206 . AB=0.109375;ABP=87.8334;AC=2;AF=0.333333;AN=6;AO=7;CIGAR=1X3M1X;DP=91;DPB=91;DPRA=1.18519;EPP=18.2106;EPPR=178.9;GTI=0;LEN=1;MEANALT=2;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=277;QR=3183;RO=81;RPL=0;RPP=18.2106;RPPR=178.9;RPR=7;RUN=1;SAF=7;SAP=18.2106;SAR=0;SRF=81;SRP=178.9;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|1:47:39,5:39:1510:5:198:-4.6279,0,-122.624 0|0:27:27,0:27:1071:0:0:0,-8.12781,-96.6847 0|1:17:15,2:15:602:2:79:-2.38012,0,-49.4025 dDocent_Contig_2889 128 . A C 3586.06 . AB=0.571984;ABP=14.5774;AC=3;AF=0.5;AN=6;AO=147;CIGAR=1X;DP=257;DPB=257;DPRA=0;EPP=322.217;EPPR=241.872;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=4896;QR=3638;RO=110;RPL=0;RPP=322.217;RPPR=241.872;RPR=147;RUN=1;SAF=0;SAP=322.217;SAR=147;SRF=0;SRP=241.872;SRR=110;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:106:21,85:21:710:85:2841:-224.032,0,-32.3079 0/1:50:33,17:33:1086:17:561:-35.7525,0,-82.9832 0/1:101:56,45:56:1842:45:1494:-104.344,0,-135.651 dDocent_Contig_2890 89 . T A 3492.82 . AB=0.510949;ABP=3.2956;AC=3;AF=0.5;AN=6;AO=140;CIGAR=1X;DP=274;DPB=274;DPRA=0;EPP=307.016;EPPR=293.988;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=4849;QR=4656;RO=134;RPL=140;RPP=307.016;RPPR=293.988;RPR=0;RUN=1;SAF=140;SAP=307.016;SAR=0;SRF=134;SRP=293.988;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:175:86,89:86:2986:89:3077:-224.492,0,-216.305 0/1:22:9,13:9:309:13:451:-34.299,0,-21.5207 0/1:77:39,38:39:1361:38:1321:-96.0134,0,-99.6124 dDocent_Contig_2891 13 . G A 11501.2 . AB=0.835517;ABP=1346.48;AC=3;AF=0.5;AN=6;AO=1148;CIGAR=1X;DP=1374;DPB=1374;DPRA=0;EPP=2495.86;EPPR=469.877;GTI=0;LEN=1;MEANALT=2;MQM=16.2787;MQMR=38.4884;NS=3;NUMALT=1;ODDS=0;PAIRED=0.021777;PAIREDR=0.153488;PAO=0;PQA=0;PQR=0;PRO=0;QA=45846;QR=8548;RO=215;RPL=0;RPP=2495.86;RPPR=469.877;RPR=1148;RUN=1;SAF=1148;SAP=2495.86;SAR=0;SRF=215;SRP=469.877;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:733:124,603:124:4916:603:24093:-633.61,0,-109.659 0/1:247:32,211:32:1280:211:8413:-206.887,0,-17.0054 0/1:394:59,334:59:2352:334:13340:-315.15,0,-46.3516 dDocent_Contig_2892 12 . A G 238.557 . AB=0;ABP=0;AC=4;AF=1;AN=4;AO=7;CIGAR=1X;DP=7;DPB=7;DPRA=0;EPP=18.2106;EPPR=0;GTI=0;LEN=1;MEANALT=1;MQM=39;MQMR=0;NS=2;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=279;QR=0;RO=0;RPL=0;RPP=18.2106;RPPR=0;RPR=7;RUN=1;SAF=7;SAP=18.2106;SAR=0;SRF=0;SRP=0;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL ./.:.:.:.:.:.:.:. 1/1:4:0,4:0:0:4:157:-13.2677,-1.20412,0 1/1:3:0,3:0:0:3:122:-10.2865,-0.90309,0 dDocent_Contig_2893 42 . T C 11805.2 . AB=0.572052;ABP=33.9893;AC=3;AF=0.5;AN=6;AO=393;CIGAR=1X;DP=687;DPB=687;DPRA=0;EPP=856.399;EPPR=641.423;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=2.77556e-17;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=15480;QR=10768;RO=294;RPL=0;RPP=856.399;RPPR=641.423;RPR=393;RUN=1;SAF=393;SAP=856.399;SAR=0;SRF=294;SRP=641.423;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:381:176,205:176:6434:205:8034:-607.961,0,-464.335 0/1:98:44,54:44:1584:54:2139:-163.199,0,-113.324 0/1:208:74,134:74:2750:134:5307:-414.882,0,-185.069 dDocent_Contig_2894 20 . A T 44.8195 . AB=0.109375;ABP=87.8334;AC=1;AF=0.166667;AN=6;AO=12;CIGAR=1X;DP=197;DPB=197;DPRA=0;EPP=29.068;EPPR=404.733;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=57.5405;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=474;QR=7378;RO=185;RPL=0;RPP=29.068;RPPR=404.733;RPR=12;RUN=1;SAF=12;SAP=29.068;SAR=0;SRF=185;SRP=404.733;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:98:95,3:95:3797:3:113:0,-18.9621,-330.677 0/0:35:33,2:33:1313:2:81:0,-2.85032,-110.355 0/1:64:57,7:57:2268:7:280:-6.30585,0,-183.707 dDocent_Contig_2896 69 . C A 62.2478 . AB=0.238095;ABP=15.5221;AC=2;AF=0.333333;AN=6;AO=5;CIGAR=1X;DP=27;DPB=27;DPRA=1.75;EPP=13.8677;EPPR=50.7827;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=171;QR=760;RO=22;RPL=5;RPP=13.8677;RPPR=50.7827;RPR=0;RUN=1;SAF=5;SAP=13.8677;SAR=0;SRF=22;SRP=50.7827;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:13:10,3:10:349:3:103:-5.69663,0,-27.8334 0/1:8:6,2:6:208:2:68:-4.04969,0,-16.6514 0/0:6:6,0:6:203:0:0:0,-1.80618,-18.6022 dDocent_Contig_2897 76 . A C 68.7388 . AB=0.2;ABP=18.6449;AC=1;AF=0.166667;AN=6;AO=4;CIGAR=1X;DP=31;DPB=31;DPRA=3.63636;EPP=11.6962;EPPR=61.6401;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=156;QR=996;RO=27;RPL=4;RPP=11.6962;RPPR=61.6401;RPR=0;RUN=1;SAF=4;SAP=11.6962;SAR=0;SRF=27;SRP=61.6401;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:20:16,4:16:604:4:156:-8.39669,0,-48.6779 0/0:5:5,0:5:170:0:0:0,-1.50515,-15.6332 0/0:6:6,0:6:222:0:0:0,-1.80618,-20.3381 dDocent_Contig_2899 51 . C T 397.088 . AB=0.5;ABP=3.0103;AC=1;AF=0.166667;AN=6;AO=14;CIGAR=1X;DP=48;DPB=48;DPRA=2.8;EPP=33.4109;EPPR=76.8404;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=0.911765;PAO=0;PQA=0;PQR=0;PRO=0;QA=548;QR=1353;RO=34;RPL=14;RPP=33.4109;RPPR=76.8404;RPR=0;RUN=1;SAF=14;SAP=33.4109;SAR=0;SRF=34;SRP=76.8404;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:28:14,14:14:563:14:548:-41.2317,0,-42.5838 0/0:12:12,0:12:466:0:0:0,-3.61236,-42.2834 0/0:8:8,0:8:324:0:0:0,-2.40824,-29.5292 dDocent_Contig_2900 13 . T A 363.033 . AB=0.290909;ABP=23.8959;AC=3;AF=0.5;AN=6;AO=16;CIGAR=2X;DP=55;DPB=55;DPRA=0;EPP=37.7539;EPPR=85.5263;GTI=0;LEN=1;MEANALT=1.33333;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=0.9375;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=629;QR=1529;RO=38;RPL=0;RPP=37.7539;RPPR=85.5263;RPR=16;RUN=1;SAF=16;SAP=37.7539;SAR=0;SRF=38;SRP=85.5263;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|1:31:21,9:21:845:9:351:-22.7163,0,-67.1414 0|1:8:7,1:7:282:1:39:-1.48832,0,-23.3447 0|1:16:10,6:10:402:6:239:-17.0674,0,-31.7225 dDocent_Contig_2901 67 . C A 1119.84 . AB=0.228682;ABP=167.975;AC=3;AF=0.5;AN=6;AO=59;CIGAR=1X;DP=258;DPB=258;DPRA=0;EPP=131.127;EPPR=435.133;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=2158;QR=7310;RO=199;RPL=59;RPP=131.127;RPPR=435.133;RPR=0;RUN=1;SAF=59;SAP=131.127;SAR=0;SRF=199;SRP=435.133;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:172:128,44:128:4806:44:1623:-94.5528,0,-380.821 0/1:26:20,6:20:752:6:223:-12.6019,0,-60.1788 0/1:60:51,9:51:1752:9:312:-10.3523,0,-139.895 dDocent_Contig_2902 107 . N G 66.4848 . AB=0;ABP=0;AC=2;AF=1;AN=2;AO=2;CIGAR=1X;DP=2;DPB=2;DPRA=0;EPP=7.35324;EPPR=0;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=0;NS=1;NUMALT=1;ODDS=5.99146;PAIRED=1;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=70;QR=0;RO=0;RPL=0;RPP=7.35324;RPPR=0;RPR=2;RUN=1;SAF=0;SAP=7.35324;SAR=2;SRF=0;SRP=0;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 1/1:2:0,2:0:0:2:70:-6.6474,-0.60206,0 ./.:.:.:.:.:.:.:. ./.:.:.:.:.:.:.:. dDocent_Contig_2903 18 . A G 361.609 . AB=0.208791;ABP=70.0396;AC=1;AF=0.166667;AN=6;AO=23;CIGAR=1X;DP=292;DPB=292;DPRA=0;EPP=52.9542;EPPR=584.965;GTI=0;LEN=1;MEANALT=1.33333;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=885;QR=10711;RO=268;RPL=0;RPP=52.9542;RPPR=584.965;RPR=23;RUN=1;SAF=23;SAP=52.9542;SAR=0;SRF=268;SRP=584.965;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:131:128,2:128:5147:2:82:0,-31.7637,-455.302 0/0:70:68,2:68:2702:2:80:0,-13.4803,-235.712 0/1:91:72,19:72:2862:19:723:-37.9848,0,-230.298 dDocent_Contig_2904 98 . N C 1462.71 . AB=0;ABP=0;AC=6;AF=1;AN=6;AO=47;CIGAR=1X;DP=47;DPB=47;DPRA=0;EPP=105.07;EPPR=0;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=0;NS=3;NUMALT=1;ODDS=1.69407e-21;PAIRED=1;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=1609;QR=0;RO=0;RPL=47;RPP=105.07;RPPR=0;RPR=0;RUN=1;SAF=47;SAP=105.07;SAR=0;SRF=0;SRP=0;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 1/1:36:0,36:0:0:36:1230:-111.003,-10.8371,0 1/1:2:0,2:0:0:2:70:-6.6474,-0.60206,0 1/1:9:0,9:0:0:9:309:-28.1433,-2.70927,0 dDocent_Contig_2906 153 . C T 773.202 . AB=0.541667;ABP=3.37221;AC=4;AF=0.666667;AN=6;AO=26;CIGAR=1X;DP=38;DPB=38;DPRA=0;EPP=59.4686;EPPR=29.068;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=1011;QR=465;RO=12;RPL=0;RPP=59.4686;RPPR=29.068;RPR=26;RUN=1;SAF=0;SAP=59.4686;SAR=26;SRF=0;SRP=29.068;SRR=12;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 1/1:14:1,13:1:40:13:494:-40.7934,-0.218741,0 0/1:12:6,6:6:224:6:238:-18.1809,0,-16.8999 0/1:12:5,7:5:201:7:279:-21.8679,0,-14.8582 dDocent_Contig_2907 37 . T A 41.2568 . AB=0.214286;ABP=12.937;AC=1;AF=0.166667;AN=6;AO=5;CIGAR=1X2M1X;DP=59;DPB=59;DPRA=2.77778;EPP=13.8677;EPPR=120.27;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=184;QR=2116;RO=54;RPL=0;RPP=13.8677;RPPR=120.27;RPR=5;RUN=1;SAF=5;SAP=13.8677;SAR=0;SRF=54;SRP=120.27;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|0:36:34,2:34:1338:2:75:0,-3.71749,-113.568 0|0:9:9,0:9:345:0:0:0,-2.70927,-31.3997 0|1:14:11,3:11:433:3:109:-5.94955,0,-35.11 dDocent_Contig_2908 98 . N A 662.192 . AB=0;ABP=0;AC=4;AF=1;AN=4;AO=24;CIGAR=1X;DP=24;DPB=24;DPRA=0;EPP=55.1256;EPPR=0;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=0;NS=2;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=726;QR=0;RO=0;RPL=24;RPP=55.1256;RPPR=0;RPR=0;RUN=1;SAF=24;SAP=55.1256;SAR=0;SRF=0;SRP=0;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 1/1:20:0,20:0:0:20:609:-55.0981,-6.0206,0 ./.:.:.:.:.:.:.:. 1/1:4:0,4:0:0:4:117:-10.8199,-1.20412,0 dDocent_Contig_2909 18 . G A 1529.88 . AB=0.354037;ABP=32.804;AC=3;AF=0.5;AN=6;AO=57;CIGAR=1X4M;DP=161;DPB=161;DPRA=0;EPP=126.784;EPPR=220.158;GTI=0;LEN=1;MEANALT=1.33333;MQM=60;MQMR=60;NS=3;NUMALT=2;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=2280;QR=3830;RO=100;RPL=0;RPP=126.784;RPPR=220.158;RPR=57;RUN=1;SAF=57;SAP=126.784;SAR=0;SRF=100;SRP=220.158;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|1:76:48,0,28:48:1822:0,28:0,1130:-79.1044,-93.5538,-242.937,0,-149.777,-141.348 0|1:51:36,4,11:36:1390:4,11:155,437:-25.1478,-23.3173,-136.26,0,-101.486,-110.845 0|1:34:16,0,18:16:618:0,18:0,713:-54.2584,-59.0749,-109.826,0,-51.1421,-45.7235 dDocent_Contig_2911 21 . T A 288.388 . AB=0.309524;ABP=16.2459;AC=2;AF=0.333333;AN=6;AO=16;CIGAR=1X2M4I2M;DP=116;DPB=128.8;DPRA=0;EPP=37.7539;EPPR=220.158;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=602;QR=3910;RO=100;RPL=0;RPP=37.7539;RPPR=220.158;RPR=16;RUN=1;SAF=16;SAP=37.7539;SAR=0;SRF=100;SRP=220.158;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|0:74:71,3:71:2772:3:110:0,-12.0154,-239.369 0|1:17:13,4:13:520:4:151:-8.8404,0,-42.0304 0|1:25:16,9:16:618:9:341:-23.5213,0,-48.428 dDocent_Contig_2913 7 . C T 344.786 . AB=0.045977;ABP=158.782;AC=0;AF=0;AN=6;AO=4;CIGAR=1X4M1X5M;DP=228;DPB=227.273;DPRA=0;EPP=11.6962;EPPR=237.529;GTI=0;LEN=1;MEANALT=8;MQM=19;MQMR=53.3519;NS=3;NUMALT=5;ODDS=0;PAIRED=0;PAIREDR=0.833333;PAO=0;PQA=0;PQR=0;PRO=0;QA=76;QR=4228;RO=108;RPL=0;RPP=11.6962;RPPR=237.529;RPR=4;RUN=1;SAF=4;SAP=11.6962;SAR=0;SRF=108;SRP=237.529;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|0:141:77,0,0,0,26,9:77:3009:0,0,0,26,9:0,0,0,585,295:-14.7964,-37.9757,-265.156,-37.9757,-265.156,-265.156,-37.9757,-265.156,-265.156,-265.156,0,-227.17,-227.17,-227.17,-219.344,-16.0916,-243.281,-243.281,-243.281,-205.298,-240.572 0|0:24:4,2,2,3,8,3:4:153:2,2,3,8,3:74,38,39,212,121:-13.2997,-8.63838,-19.963,-12.2322,-18.2937,-23.5528,-12.7054,-18.7657,-22.3584,-23.7228,0,-6.06669,-9.66685,-10.1482,-9.52245,-4.58665,-10.6525,-14.2452,-14.7175,-2.01324,-15.6141 0|0:63:27,0,2,3,19,4:27:1066:0,2,3,19,4:0,38,115,343,159:-11.904,-20.0318,-96.6622,-17.7538,-94.3847,-93.7827,-10.5791,-87.2194,-84.942,-86.3163,0,-76.6142,-74.3409,-67.1726,-70.8946,-7.46157,-84.1056,-81.8282,-74.662,-64.0592,-82.9015 dDocent_Contig_2914 11 . T C 2500.53 . AB=0.642336;ABP=27.1184;AC=3;AF=0.5;AN=6;AO=88;CIGAR=1X;DP=137;DPB=137;DPRA=0;EPP=194.1;EPPR=109.412;GTI=0;LEN=1;MEANALT=1;MQM=43.5682;MQMR=54.6122;NS=3;NUMALT=1;ODDS=0;PAIRED=0;PAIREDR=0.897959;PAO=0;PQA=0;PQR=0;PRO=0;QA=3531;QR=1956;RO=49;RPL=0;RPP=194.1;RPPR=109.412;RPR=88;RUN=1;SAF=88;SAP=194.1;SAR=0;SRF=49;SRP=109.412;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:59:28,31:28:1136:31:1229:-83.3656,0,-69.6907 0/1:25:10,15:10:404:15:613:-43.6366,0,-29.1943 0/1:53:11,42:11:416:42:1689:-128.574,0,-21.8292 dDocent_Contig_2915 68 . C T 1315.12 . AB=0.395349;ABP=15.2816;AC=2;AF=0.333333;AN=6;AO=51;CIGAR=1X;DP=169;DPB=169;DPRA=1.6125;EPP=113.755;EPPR=259.244;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=1925;QR=4347;RO=118;RPL=51;RPP=113.755;RPPR=259.244;RPR=0;RUN=1;SAF=51;SAP=113.755;SAR=0;SRF=118;SRP=259.244;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:88:45,43:45:1690:43:1630:-120.476,0,-125.865 0/1:41:33,8:33:1233:8:295:-14.5595,0,-98.9225 0/0:40:40,0:40:1424:0:0:0,-12.0412,-128.448 dDocent_Contig_2918 42 . G A 146.274 . AB=0.4;ABP=4.31318;AC=1;AF=0.166667;AN=6;AO=6;CIGAR=1X;DP=31;DPB=31;DPRA=1.875;EPP=16.0391;EPPR=57.2971;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=8.67362e-19;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=229;QR=996;RO=25;RPL=0;RPP=16.0391;RPPR=57.2971;RPR=6;RUN=1;SAF=6;SAP=16.0391;SAR=0;SRF=25;SRP=57.2971;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:11:11,0:11:444:0:0:0,-3.31133,-40.3156 0/0:5:5,0:5:198:0:0:0,-1.50515,-18.197 0/1:15:9,6:9:354:6:229:-16.4512,0,-27.6999 dDocent_Contig_2919 107 . N C 230.703 . AB=0;ABP=0;AC=4;AF=1;AN=4;AO=8;CIGAR=1X;DP=8;DPB=8;DPRA=0;EPP=20.3821;EPPR=0;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=0;NS=2;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=246;QR=0;RO=0;RPL=0;RPP=20.3821;RPPR=0;RPR=8;RUN=1;SAF=0;SAP=20.3821;SAR=8;SRF=0;SRP=0;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 1/1:6:0,6:0:0:6:178:-16.3108,-1.80618,0 1/1:2:0,2:0:0:2:68:-6.45788,-0.60206,0 ./.:.:.:.:.:.:.:. dDocent_Contig_2920 41 . T A 108.999 . AB=0.16;ABP=53.2147;AC=2;AF=0.333333;AN=6;AO=8;CIGAR=1X;DP=73;DPB=73;DPRA=1.08696;EPP=20.3821;EPPR=144.156;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=319;QR=2561;RO=65;RPL=0;RPP=20.3821;RPPR=144.156;RPR=8;RUN=1;SAF=8;SAP=20.3821;SAR=0;SRF=65;SRP=144.156;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:25:21,4:21:829:4:158:-7.07361,0,-67.3947 0/0:23:23,0:23:905:0:0:0,-6.92369,-81.756 0/1:25:21,4:21:827:4:161:-7.34915,0,-67.2133 dDocent_Contig_2921 8 . G A 29401.8 . AB=0.109557;ABP=571.06;AC=2;AF=0.333333;AN=6;AO=92;CIGAR=1M1I2M1X1M;DP=1007;DPB=1203.8;DPRA=0;EPP=202.786;EPPR=70.3259;GTI=0;LEN=1;MEANALT=3;MQM=60;MQMR=60;NS=3;NUMALT=2;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=34.5;PRO=1;QA=3504;QR=1155;RO=31;RPL=0;RPP=202.786;RPPR=70.3259;RPR=92;RUN=1;SAF=92;SAP=202.786;SAR=0;SRF=31;SRP=70.3259;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|0:578:10,45,519:10:370:45,519:1712,19842:-1747.88,-1610.48,-1627.2,-125.968,-15.8192,0 1|0:181:6,21,154:6:228:21,154:803,5804:-519.194,-455.107,-467.484,-47.1965,0,-19.5361 1|0:248:15,26,206:15:557:26,206:989,7878:-676.629,-600.029,-637.783,-35.5407,0,-19.1057 dDocent_Contig_2922 23 . T C 713.883 . AB=0.214286;ABP=122.131;AC=3;AF=0.5;AN=6;AO=36;CIGAR=1X;DP=168;DPB=168;DPRA=0;EPP=81.1833;EPPR=289.645;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=59.7955;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=0.893939;PAO=0;PQA=0;PQR=0;PRO=0;QA=1405;QR=5088;RO=132;RPL=0;RPP=81.1833;RPPR=289.645;RPR=36;RUN=1;SAF=36;SAP=81.1833;SAR=0;SRF=132;SRP=289.645;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:94:74,20:74:2844:20:758:-40.225,0,-227.743 0/1:26:20,6:20:770:6:238:-13.965,0,-61.7889 0/1:48:38,10:38:1474:10:409:-22.7211,0,-118.477 dDocent_Contig_2923 9 . G A 136.536 . AB=0.150685;ABP=80.3802;AC=2;AF=0.333333;AN=6;AO=11;CIGAR=1X;DP=78;DPB=78;DPRA=7.3;EPP=26.8965;EPPR=148.499;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=425;QR=2576;RO=67;RPL=0;RPP=26.8965;RPPR=148.499;RPR=11;RUN=1;SAF=11;SAP=26.8965;SAR=0;SRF=67;SRP=148.499;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:42:38,4:38:1459:4:154:-1.59033,0,-118.942 0/0:5:5,0:5:190:0:0:0,-1.50515,-17.4667 0/1:31:24,7:24:927:7:271:-15.4245,0,-74.4141 dDocent_Contig_2924 39 . A C 80.0831 . AB=0.166667;ABP=31.9633;AC=1;AF=0.166667;AN=6;AO=5;CIGAR=1X1M1X;DP=54;DPB=54;DPRA=2.5;EPP=13.8677;EPPR=109.412;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=0;PAIREDR=0.938776;PAO=0;PQA=0;PQR=0;PRO=0;QA=202;QR=1911;RO=49;RPL=0;RPP=13.8677;RPPR=109.412;RPR=5;RUN=1;SAF=5;SAP=13.8677;SAR=0;SRF=49;SRP=109.412;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|1:30:25,5:25:981:5:202:-9.53118,0,-79.5638 0|0:8:8,0:8:311:0:0:0,-2.40824,-28.3519 0|0:16:16,0:16:619:0:0:0,-4.81648,-56.0437 dDocent_Contig_2925 113 . A T 190.386 . AB=0.134615;ABP=63.3104;AC=2;AF=0.333334;AN=6;AO=9;CIGAR=2X;DP=91;DPB=91;DPRA=0;EPP=22.5536;EPPR=161.528;GTI=0;LEN=1;MEANALT=2;MQM=60;MQMR=60;NS=3;NUMALT=2;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=292;QR=2418;RO=73;RPL=0;RPP=22.5536;RPPR=161.528;RPR=9;RUN=1;SAF=0;SAP=22.5536;SAR=9;SRF=0;SRP=161.528;SRR=73;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|0:39:35,1,2:35:1186:1,2:35,68:0,-7.66333,-103.61,-4.95514,-98.3949,-100.641 0|1:24:16,7,1:16:514:7,1:228,34:-13.5783,0,-39.3058,-15.635,-38.6539,-56.7615 0|1:28:22,0,6:22:718:0,6:0,190:-8.98314,-15.6058,-73.5893,0,-58.3021,-56.4959 dDocent_Contig_2926 13 . C A 2733.49 . AB=0.202744;ABP=506.487;AC=3;AF=0.5;AN=6;AO=133;CIGAR=1X;DP=656;DPB=656;DPRA=0;EPP=291.816;EPPR=1123.49;GTI=0;LEN=1;MEANALT=1.66667;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=5271;QR=20660;RO=516;RPL=0;RPP=291.816;RPPR=1123.49;RPR=133;RUN=1;SAF=133;SAP=291.816;SAR=0;SRF=516;SRP=1123.49;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:314:243,71:243:9730:71:2791:-156.787,0,-780.559 0/1:175:142,30:142:5677:30:1197:-55.8249,0,-458.57 0/1:167:131,32:131:5253:32:1283:-66.2596,0,-423.146 dDocent_Contig_2927 9 . A G 13806.7 . AB=0.80531;ABP=460.461;AC=3;AF=0.5;AN=6;AO=455;CIGAR=1X;DP=565;DPB=565;DPRA=0;EPP=991.03;EPPR=241.872;GTI=0;LEN=1;MEANALT=1;MQM=58.5956;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=0.925275;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=17380;QR=4163;RO=110;RPL=0;RPP=991.03;RPPR=241.872;RPR=455;RUN=1;SAF=455;SAP=991.03;SAR=0;SRF=110;SRP=241.872;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:225:55,170:55:2090:170:6555:-516.265,0,-120.603 0/1:188:28,160:28:1062:160:6049:-486.533,0,-39.2927 0/1:152:27,125:27:1011:125:4776:-383.395,0,-45.5387 dDocent_Contig_2928 10 . T A 4364.75 . AB=0.155023;ABP=1556.66;AC=3;AF=0.5;AN=6;AO=233;CIGAR=5M1X;DP=1503;DPB=1529;DPRA=0;EPP=508.963;EPPR=2304.77;GTI=0;LEN=1;MEANALT=5.66667;MQM=60;MQMR=59.9925;NS=3;NUMALT=2;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=9246;QR=40477;RO=1060;RPL=0;RPP=508.963;RPPR=2304.77;RPR=233;RUN=1;SAF=233;SAP=508.963;SAR=0;SRF=1060;SRP=2304.77;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|1:627:434,75,93:434:16588:75,93:2835,3687:-172.815,-71.1033,-1409.62,0,-1128.74,-1333.11 0|1:479:341,51,73:341:12985:51,73:1901,2892:-135.379,-82.4228,-1132.18,0,-909.51,-1043.15 0|1:397:285,29,67:285:10904:29,67:1120,2667:-133.803,-127.612,-1013.67,0,-802.809,-874.627 dDocent_Contig_2929 8 . T C 12487.1 . AB=0.725352;ABP=253.555;AC=3;AF=0.5;AN=6;AO=412;CIGAR=1X;DP=568;DPB=568;DPRA=0;EPP=897.657;EPPR=335.246;GTI=0;LEN=1;MEANALT=1.66667;MQM=59.9709;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=0.995146;PAIREDR=0.843137;PAO=0;PQA=0;PQR=0;PRO=0;QA=15835;QR=5899;RO=153;RPL=0;RPP=897.657;RPPR=335.246;RPR=412;RUN=1;SAF=412;SAP=897.657;SAR=0;SRF=153;SRP=335.246;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:328:95,231:95:3655:231:8864:-698.973,0,-230.548 0/1:55:7,48:7:266:48:1825:-147.944,0,-7.74505 0/1:185:51,133:51:1978:133:5146:-407.315,0,-122.477 dDocent_Contig_2931 8 . A C 1189.19 . AB=0.212766;ABP=205.096;AC=3;AF=0.5;AN=6;AO=60;CIGAR=1X;DP=282;DPB=282;DPRA=0;EPP=133.299;EPPR=485.077;GTI=0;LEN=1;MEANALT=1;MQM=59.9833;MQMR=59.9955;NS=3;NUMALT=1;ODDS=1.38778e-17;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=2315;QR=8526;RO=222;RPL=0;RPP=133.299;RPPR=485.077;RPR=60;RUN=1;SAF=60;SAP=133.299;SAR=0;SRF=222;SRP=485.077;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:157:123,34:123:4720:34:1306:-70.5625,0,-377.579 0/1:51:41,10:41:1559:10:390:-20.1062,0,-125.228 0/1:74:58,16:58:2247:16:619:-33.7733,0,-180.171 dDocent_Contig_2933 162 . A G 109.682 . AB=0.123457;ABP=102.764;AC=1;AF=0.166667;AN=6;AO=11;CIGAR=1X;DP=219;DPB=219;DPRA=0.533019;EPP=26.8965;EPPR=445.991;GTI=0;LEN=1;MEANALT=1.5;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=442;QR=7317;RO=204;RPL=11;RPP=26.8965;RPPR=445.991;RPR=0;RUN=1;SAF=0;SAP=26.8965;SAR=11;SRF=0;SRP=445.991;SRR=204;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:106:104,0:104:3759:0:0:0,-31.3071,-338.383 0/0:32:31,1:31:1019:1:38:0,-5.83569,-88.1819 0/1:81:69,10:69:2539:10:404:-12.7921,0,-204.833 dDocent_Contig_2934 70 . A G 1041.42 . AB=0.244565;ABP=107.288;AC=2;AF=0.333333;AN=6;AO=46;CIGAR=1X;DP=212;DPB=212;DPRA=0;EPP=102.898;EPPR=363.475;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=1846;QR=6573;RO=166;RPL=46;RPP=102.898;RPPR=363.475;RPR=0;RUN=1;SAF=46;SAP=102.898;SAR=0;SRF=166;SRP=363.475;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:158:118,40:118:4668:40:1611:-97.6593,0,-372.492 0/1:26:21,5:21:822:5:194:-10.0052,0,-66.4683 0/0:28:27,1:27:1083:1:41:0,-4.33427,-93.6611 dDocent_Contig_2935 33 . A G 255.982 . AB=0.255814;ABP=25.2805;AC=2;AF=0.333333;AN=6;AO=11;CIGAR=1X;DP=62;DPB=62;DPRA=1.13158;EPP=26.8965;EPPR=113.755;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=3.46945e-18;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=441;QR=2056;RO=51;RPL=0;RPP=26.8965;RPPR=113.755;RPR=11;RUN=1;SAF=11;SAP=26.8965;SAR=0;SRF=51;SRP=113.755;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:31:21,10:21:847:10:401:-27.1176,0,-67.21 0/1:12:11,1:11:440:1:40:-0.383319,0,-36.3429 0/0:19:19,0:19:769:0:0:0,-5.71957,-69.5291 dDocent_Contig_2936 20 . T G 685.324 . AB=0.25;ABP=70.3259;AC=2;AF=0.333333;AN=6;AO=32;CIGAR=1X;DP=142;DPB=142;DPRA=0;EPP=72.4974;EPPR=241.872;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=1249;QR=4341;RO=110;RPL=0;RPP=72.4974;RPPR=241.872;RPR=32;RUN=1;SAF=32;SAP=72.4974;SAR=0;SRF=110;SRP=241.872;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:69:49,20:49:1948:20:789:-50.5575,0,-154.752 0/0:18:17,1:17:659:1:41:0,-1.32397,-55.5431 0/1:55:44,11:44:1734:11:419:-21.4977,0,-139.729 dDocent_Contig_2937 7 . C T 112.77 . AB=0.195122;ABP=36.112;AC=1;AF=0.166667;AN=6;AO=13;CIGAR=1X;DP=200;DPB=200;DPRA=1.31818;EPP=7.18621;EPPR=358.632;GTI=0;LEN=1;MEANALT=1;MQM=58.7692;MQMR=50.2513;NS=3;NUMALT=1;ODDS=0;PAIRED=0.384615;PAIREDR=0.812834;PAO=0;PQA=0;PQR=0;PRO=0;QA=474;QR=7141;RO=187;RPL=0;RPP=31.2394;RPPR=409.076;RPR=13;RUN=1;SAF=9;SAP=7.18621;SAR=4;SRF=181;SRP=358.632;SRR=6;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:104:99,5:99:3798:5:195:0,-13.4018,-284.576 0/1:41:33,8:33:1226:8:279:-13.1009,0,-97.4328 0/0:55:55,0:55:2117:0:0:0,-16.5566,-154.956 dDocent_Contig_2938 27 . C G 31.8071 . AB=0.109375;ABP=87.8334;AC=2;AF=0.333333;AN=6;AO=8;CIGAR=1X;DP=88;DPB=88;DPRA=0;EPP=20.3821;EPPR=174.557;GTI=0;LEN=1;MEANALT=1.33333;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=317;QR=3077;RO=79;RPL=0;RPP=20.3821;RPPR=174.557;RPR=8;RUN=1;SAF=8;SAP=20.3821;SAR=0;SRF=79;SRP=174.557;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:45:40,5:40:1546:5:198:-4.65052,0,-125.828 0/1:19:16,2:16:637:2:78:-1.5885,0,-51.8486 0/0:24:23,1:23:894:1:41:0,-3.13015,-76.67 dDocent_Contig_2939 10 . C T 56.096 . AB=0.148936;ABP=53.3238;AC=1;AF=0.166667;AN=6;AO=7;CIGAR=1M1I4M1X1M;DP=181;DPB=182.429;DPRA=0.701493;EPP=18.2106;EPPR=374.332;GTI=0;LEN=1;MEANALT=2;MQM=60;MQMR=60;NS=3;NUMALT=2;ODDS=3.46945e-18;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=237;QR=6588;RO=171;RPL=0;RPP=18.2106;RPPR=374.332;RPR=7;RUN=1;SAF=7;SAP=18.2106;SAR=0;SRF=171;SRP=374.332;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|0:97:97,0,0:97:3736:0,0:0,0:0,-29.1999,-336.349,-29.1999,-336.349,-336.349 0|1:47:39,7,1:39:1497:7,1:237,38:-7.4335,0,-120.777,-16.052,-119.768,-138.67 0|0:37:35,0,2:35:1355:0,2:0,76:0,-10.536,-121.854,-3.92344,-115.622,-115.02 dDocent_Contig_2940 78 . A G 2145.41 . AB=0.046875;ABP=231.286;AC=0;AF=0;AN=6;AO=6;CIGAR=1X3M2I3M;DP=128;DPB=154.286;DPRA=0;EPP=16.0391;EPPR=81.1833;GTI=0;LEN=1;MEANALT=2;MQM=60;MQMR=60;NS=3;NUMALT=2;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=197;QR=1203;RO=36;RPL=6;RPP=16.0391;RPPR=81.1833;RPR=0;RUN=1;SAF=6;SAP=16.0391;SAR=0;SRF=36;SRP=81.1833;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|0:55:19,2,34:19:648:2,34:67,1129:-85.6209,-85.9141,-137.896,0,-47.1605,-42.3511 0|0:41:12,2,27:12:382:2,27:61,880:-67.4554,-66.1822,-96.3351,0,-25.8836,-22.6409 0|0:32:5,2,25:5:173:2,25:69,845:-66.9876,-62.8865,-76.345,0,-8.45446,-6.53415 dDocent_Contig_2942 9 . G T 3351.81 . AB=0.112903;ABP=164.4;AC=1;AF=0.166667;AN=6;AO=14;CIGAR=1X1M1X;DP=172;DPB=172;DPRA=0;EPP=33.4109;EPPR=74.6689;GTI=0;LEN=1;MEANALT=3.5;MQM=60;MQMR=60;NS=3;NUMALT=3;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=541;QR=1154;RO=33;RPL=0;RPP=33.4109;RPPR=74.6689;RPR=14;RUN=1;SAF=14;SAP=33.4109;SAR=0;SRF=33;SRP=74.6689;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|0:100:15,11,11,62:15:521:11,11,62:425,417,2353:-188.422,-158.03,-197.061,-158.748,-166.182,-197.779,0,-7.42014,-8.14019,-23.6705 1|0:24:1,3,0,19:1:37:3,0,19:116,0,730:-66.1326,-56.905,-59.0283,-66.4336,-59.9314,-69.46,-6.50871,0,-9.53224,-3.81267 0|0:48:17,0,2,29:17:596:0,2,29:0,78,1112:-86.1474,-91.265,-139.749,-84.8528,-133.336,-132.734,0,-48.4607,-42.0448,-39.7308 dDocent_Contig_2944 9 . G A 12767.4 . AB=0.382445;ABP=156.171;AC=3;AF=0.5;AN=6;AO=488;CIGAR=1X;DP=1276;DPB=1276;DPRA=0;EPP=1062.69;EPPR=1711.96;GTI=0;LEN=1;MEANALT=1.33333;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=18518;QR=29974;RO=787;RPL=0;RPP=1062.69;RPPR=1711.96;RPR=488;RUN=1;SAF=488;SAP=1062.69;SAR=0;SRF=787;SRP=1711.96;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:653:446,207:446:16963:207:7818:-506.884,0,-1329.26 0/1:374:205,168:205:7775:168:6382:-461.64,0,-586.909 0/1:249:136,113:136:5236:113:4318:-313.737,0,-396.279 dDocent_Contig_2945 206 . C A 1946.13 . AB=0.0769231;ABP=184.913;AC=1;AF=0.166667;AN=6;AO=9;CIGAR=6M1X;DP=117;DPB=67;DPRA=0;EPP=22.5536;EPPR=85.5263;GTI=0;LEN=1;MEANALT=2;MQM=60;MQMR=60;NS=3;NUMALT=2;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=331;QR=1443;RO=38;RPL=9;RPP=22.5536;RPPR=85.5263;RPR=0;RUN=1;SAF=0;SAP=22.5536;SAR=9;SRF=0;SRP=85.5263;SRR=38;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|0:76:27,44,5:27:1025:44,5:1604,183:-122.905,0,-70.8193,-116.077,-69.111,-198.631 0|1:15:2,10,3:2:77:10,3:362,111:-31.6879,-2.74375,-6.0618,-23.2071,0,-28.6302 0|0:26:9,16,1:9:341:16,1:590,37:-45.5425,0,-23.15,-45.2247,-24.9404,-72.8859 dDocent_Contig_2946 91 . T G 100.841 . AB=0.151515;ABP=72.629;AC=1;AF=0.166667;AN=6;AO=14;CIGAR=1X;DP=111;DPB=111;DPRA=0;EPP=33.4109;EPPR=213.643;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=471;QR=3352;RO=97;RPL=14;RPP=33.4109;RPPR=213.643;RPR=0;RUN=1;SAF=14;SAP=33.4109;SAR=0;SRF=97;SRP=213.643;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:66:56,10:56:1917:10:346:-11.6065,0,-152.928 0/0:22:20,2:20:709:2:63:0,-0.638894,-58.1524 0/0:23:21,2:21:726:2:62:0,-1.0352,-59.7698 dDocent_Contig_2948 7 . C T 414.844 . AB=0.211009;ABP=82.0798;AC=3;AF=0.5;AN=6;AO=23;CIGAR=1X;DP=109;DPB=109;DPRA=0;EPP=52.9542;EPPR=189.757;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=0.976744;PAO=0;PQA=0;PQR=0;PRO=0;QA=875;QR=3315;RO=86;RPL=0;RPP=52.9542;RPPR=189.757;RPR=23;RUN=1;SAF=23;SAP=52.9542;SAR=0;SRF=86;SRP=189.757;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:25:19,6:19:727:6:216:-12.2597,0,-58.2302 0/1:31:25,6:25:964:6:232:-11.917,0,-77.7413 0/1:53:42,11:42:1624:11:427:-22.8305,0,-130.469 dDocent_Contig_2949 9 . G A 145.483 . AB=0.146667;ABP=84.3392;AC=1;AF=0.166667;AN=6;AO=15;CIGAR=1X3M;DP=154;DPB=154;DPRA=0;EPP=35.5824;EPPR=287.473;GTI=0;LEN=1;MEANALT=2.33333;MQM=59.2667;MQMR=59.9847;NS=3;NUMALT=2;ODDS=1.38778e-17;PAIRED=0.533333;PAIREDR=0.885496;PAO=0;PQA=0;PQR=0;PRO=0;QA=563;QR=5124;RO=131;RPL=0;RPP=35.5824;RPPR=287.473;RPR=15;RUN=1;SAF=15;SAP=35.5824;SAR=0;SRF=131;SRP=287.473;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|0:38:34,1,3:34:1338:1,3:39,111:0,-7.52558,-117.31,-1.12865,-108.532,-110.346 0|1:75:58,5,11:58:2270:5,11:194,413:-16.3721,-17.8867,-203.044,0,-170.721,-183.349 0|0:41:39,0,1:39:1516:0,1:0,39:0,-11.7402,-136.426,-8.44547,-133.254,-132.953 dDocent_Contig_2950 12 . C A 66.5452 . AB=0.333333;ABP=5.18177;AC=1;AF=0.166667;AN=6;AO=3;CIGAR=1X2M1X;DP=31;DPB=31;DPRA=0.818182;EPP=9.52472;EPPR=63.8115;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=8.67362e-19;PAIRED=1;PAIREDR=0.785714;PAO=0;PQA=0;PQR=0;PRO=0;QA=120;QR=1106;RO=28;RPL=0;RPP=9.52472;RPPR=63.8115;RPR=3;RUN=1;SAF=3;SAP=9.52472;SAR=0;SRF=28;SRP=63.8115;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|0:14:14,0:14:562:0:0:0,-4.21442,-50.9243 0|1:9:6,3:6:236:3:120:-8.47842,0,-18.903 0|0:8:8,0:8:308:0:0:0,-2.40824,-28.075 dDocent_Contig_2951 8 . C T 3152.8 . AB=0.236453;ABP=370.417;AC=3;AF=0.5;AN=6;AO=144;CIGAR=1X1M;DP=609;DPB=609;DPRA=0;EPP=307.077;EPPR=861.265;GTI=0;LEN=1;MEANALT=3.33333;MQM=54.4028;MQMR=56.2554;NS=3;NUMALT=3;ODDS=0;PAIRED=0.166667;PAIREDR=0.253012;PAO=0;PQA=0;PQR=0;PRO=0;QA=5501;QR=15702;RO=415;RPL=0;RPP=315.702;RPPR=904.171;RPR=144;RUN=1;SAF=143;SAP=307.077;SAR=1;SRF=410;SRP=861.265;SRR=5;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|1:236:156,4,11,65:156:5945:4,11,65:148,420,2504:-155.9,-191.852,-675.092,-169.217,-642.653,-650.351,0,-473.448,-450.814,-464.89 0|1:193:123,11,6,51:123:4545:11,6,51:408,227,1925:-118.555,-125.949,-490.963,-138.949,-477.641,-505.471,0,-338.718,-351.72,-353.001 0|1:180:136,2,14,28:136:5212:2,14,28:76,538,1072:-46.3479,-82.1714,-504.722,-43.144,-461.182,-462.087,0,-418.039,-379.015,-414.729 dDocent_Contig_2952 75 . C A 58.8767 . AB=0.157895;ABP=41.6397;AC=1;AF=0.166667;AN=6;AO=7;CIGAR=1X;DP=151;DPB=151;DPRA=1.4359;EPP=18.2106;EPPR=315.702;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=3.46945e-18;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=246;QR=5299;RO=144;RPL=7;RPP=18.2106;RPPR=315.702;RPR=0;RUN=1;SAF=7;SAP=18.2106;SAR=0;SRF=144;SRP=315.702;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:74:73,1:73:2696:1:37:0,-18.5784,-239.135 0/0:39:39,0:39:1473:0:0:0,-11.7402,-132.848 0/1:38:32,6:32:1130:6:209:-7.71158,0,-90.564 dDocent_Contig_2953 7 . C T 519.223 . AB=0.131054;ABP=418.009;AC=1;AF=0.166667;AN=6;AO=66;CIGAR=1X;DP=701;DPB=701;DPRA=0;EPP=146.327;EPPR=1381.9;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=2517;QR=24120;RO=635;RPL=0;RPP=146.327;RPPR=1381.9;RPR=66;RUN=1;SAF=66;SAP=146.327;SAR=0;SRF=635;SRP=1381.9;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:351:305,46:305:11538:46:1765:-53.4439,0,-932.309 0/0:155:152,3:152:5792:3:104:0,-36.9579,-511.549 0/0:195:178,17:178:6790:17:648:0,-0.0464852,-552.343 dDocent_Contig_2954 20 . T C 8018.6 . AB=0.675676;ABP=12.9286;AC=5;AF=0.833333;AN=6;AO=243;CIGAR=1X;DP=265;DPB=265;DPRA=0;EPP=530.678;EPPR=50.7827;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=9450;QR=842;RO=22;RPL=0;RPP=530.678;RPPR=50.7827;RPR=243;RUN=1;SAF=243;SAP=530.678;SAR=0;SRF=22;SRP=50.7827;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 1/1:150:8,142:8:315:142:5558:-471.391,-16.4406,0 0/1:37:12,25:12:447:25:962:-75.7489,0,-29.4298 1/1:78:2,76:2:80:76:2930:-256.243,-15.8885,0 dDocent_Contig_2955 9 . G T 31607.3 . AB=0;ABP=0;AC=0;AF=0;AN=6;AO=32;CIGAR=2X;DP=1020;DPB=1020;DPRA=2.27673;EPP=72.4974;EPPR=113.755;GTI=0;LEN=1;MEANALT=3;MQM=60;MQMR=60;NS=3;NUMALT=2;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=1240;QR=1941;RO=51;RPL=0;RPP=72.4974;RPPR=113.755;RPR=32;RUN=1;SAF=32;SAP=72.4974;SAR=0;SRF=51;SRP=113.755;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|0:543:16,32,494:16:608:32,494:1240,19639:-1708.94,-1611.89,-1652.12,-98.8495,-46.8393,0 0|0:196:17,0,179:17:637:0,179:0,7095:-579.945,-585.062,-637.232,-1.33868,-53.8844,0 0|0:281:18,0,262:18:696:0,262:0,10392:-871.364,-876.783,-933.949,-21.7159,-78.8699,0 dDocent_Contig_2956 29 . T G 44413.1 . AB=0.757014;ABP=1086.84;AC=3;AF=0.5;AN=6;AO=1430;CIGAR=1X;DP=1889;DPB=1889;DPRA=0;EPP=3108.22;EPPR=897.657;GTI=0;LEN=1;MEANALT=2;MQM=59.8986;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=0.981119;PAIREDR=0.987864;PAO=0;PQA=0;PQR=0;PRO=0;QA=55670;QR=16284;RO=412;RPL=0;RPP=3108.22;RPPR=897.657;RPR=1430;RUN=1;SAF=1430;SAP=3108.22;SAR=0;SRF=412;SRP=897.657;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:898:201,676:201:7967:676:26352:-2103.43,0,-452.25 0/1:377:103,263:103:4024:263:10156:-800.968,0,-251.599 0/1:614:108,491:108:4293:491:19162:-1542.44,0,-205.612 dDocent_Contig_2957 26 . C T 31.9171 . AB=0.111111;ABP=62.1226;AC=1;AF=0.166667;AN=6;AO=18;CIGAR=1X;DP=235;DPB=235;DPRA=0;EPP=42.0968;EPPR=474.22;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=0.833333;PAIREDR=0.746544;PAO=0;PQA=0;PQR=0;PRO=0;QA=723;QR=8642;RO=217;RPL=0;RPP=42.0968;RPPR=474.22;RPR=18;RUN=1;SAF=18;SAP=42.0968;SAR=0;SRF=217;SRP=474.22;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:115:108,7:108:4292:7:284:0,-8.68503,-360.297 0/1:45:40,5:40:1597:5:202:-5.01514,0,-130.418 0/0:75:69,6:69:2753:6:237:0,-0.875235,-226.185 dDocent_Contig_2958 19 . G T 243.683 . AB=0.213115;ABP=46.6177;AC=3;AF=0.5;AN=6;AO=13;CIGAR=1X6M;DP=61;DPB=61;DPRA=0;EPP=31.2394;EPPR=94.2121;GTI=0;LEN=1;MEANALT=2.33333;MQM=58.0769;MQMR=60;NS=3;NUMALT=3;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=508;QR=1550;RO=42;RPL=0;RPP=31.2394;RPPR=94.2121;RPR=13;RUN=1;SAF=13;SAP=31.2394;SAR=0;SRF=42;SRP=94.2121;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|1:23:13,2,2,4:13:475:2,2,4:71,78,158:-9.09989,-7.54693,-45.7551,-7.05505,-40.4012,-45.2674,0,-33.3628,-32.8745,-37.6275 0|1:14:10,0,0,4:10:367:0,0,4:0,0,152:-9.81848,-12.8288,-42.8194,-12.8288,-42.8194,-42.8194,0,-30.3663,-30.3663,-29.1622 0|1:24:19,0,0,5:19:708:0,0,5:0,0,198:-10.9728,-16.6924,-74.6317,-16.6924,-74.6317,-74.6317,0,-58.33,-58.33,-56.8249 dDocent_Contig_2959 15 . T C 4811.43 . AB=0.675439;ABP=63.9639;AC=3;AF=0.5;AN=6;AO=154;CIGAR=1X1M;DP=228;DPB=228;DPRA=0;EPP=337.417;EPPR=148.499;GTI=0;LEN=1;MEANALT=1.33333;MQM=60;MQMR=60;NS=3;NUMALT=2;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=6145;QR=2624;RO=67;RPL=0;RPP=337.417;RPPR=148.499;RPR=154;RUN=1;SAF=154;SAP=337.417;SAR=0;SRF=67;SRP=148.499;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|1:100:38,7,55:38:1498:7,55:279,2214:-171.027,-159.492,-280.622,0,-100.262,-106.681 0|1:60:14,0,46:14:543:0,46:0,1827:-146.572,-150.786,-195.396,0,-45.0001,-31.1527 0|1:68:15,0,53:15:583:0,53:0,2104:-169.068,-173.584,-221.491,0,-48.2971,-32.3425 dDocent_Contig_2960 18 . G A 1482.81 . AB=0.313514;ABP=58.8934;AC=3;AF=0.5;AN=6;AO=58;CIGAR=1X;DP=185;DPB=185;DPRA=0;EPP=128.956;EPPR=278.787;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=1.38778e-17;PAIRED=0.982759;PAIREDR=0.929134;PAO=0;PQA=0;PQR=0;PRO=0;QA=2317;QR=4982;RO=127;RPL=0;RPP=128.956;RPPR=278.787;RPR=58;RUN=1;SAF=58;SAP=128.956;SAR=0;SRF=127;SRP=278.787;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:101:70,31:70:2761:31:1241:-81.56,0,-218.206 0/1:31:25,6:25:982:6:242:-12.8254,0,-79.3456 0/1:53:32,21:32:1239:21:834:-59.4182,0,-95.8263 dDocent_Contig_2961 29 . A C 126.701 . AB=0.416667;ABP=3.73412;AC=1;AF=0.166667;AN=6;AO=5;CIGAR=1X;DP=57;DPB=57;DPRA=0.533333;EPP=13.8677;EPPR=115.927;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=197;QR=2074;RO=52;RPL=0;RPP=13.8677;RPPR=115.927;RPR=5;RUN=1;SAF=5;SAP=13.8677;SAR=0;SRF=52;SRP=115.927;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:34:34,0:34:1363:0:0:0,-10.235,-122.93 0/0:11:11,0:11:433:0:0:0,-3.31133,-39.323 0/1:12:7,5:7:278:5:197:-14.494,0,-21.7786 dDocent_Contig_2962 9 . C G 170.764 . AB=0.176471;ABP=64.8334;AC=3;AF=0.5;AN=6;AO=12;CIGAR=1X;DP=68;DPB=68;DPRA=0;EPP=29.068;EPPR=124.613;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=0.416667;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=466;QR=2154;RO=56;RPL=0;RPP=29.068;RPPR=124.613;RPR=12;RUN=1;SAF=12;SAP=29.068;SAR=0;SRF=56;SRP=124.613;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:30:26,4:26:1006:4:154:-5.20256,0,-81.8189 0/1:27:21,6:21:799:6:234:-13.3033,0,-64.1056 0/1:11:9,2:9:349:2:78:-4.09214,0,-28.4596 dDocent_Contig_2963 26 . G A 101.078 . AB=0.227273;ABP=17.2236;AC=1;AF=0.166667;AN=6;AO=6;CIGAR=1X6M1X1M2D5M;DP=153;DPB=151.875;DPRA=0.754098;EPP=16.0391;EPPR=313.531;GTI=0;LEN=1;MEANALT=2;MQM=60;MQMR=60;NS=3;NUMALT=2;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=231;QR=5610;RO=143;RPL=0;RPP=16.0391;RPPR=313.531;RPR=6;RUN=1;SAF=6;SAP=16.0391;SAR=0;SRF=143;SRP=313.531;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|0:70:69,0,1:69:2709:0,1:0,38:0,-20.7711,-243.585,-17.2748,-240.468,-240.167 0|1:22:13,3,5:13:509:3,5:117,193:-11.9317,-6.22764,-47.1783,0,-32.2331,-40.345 0|0:61:61,0,0:61:2392:0,0:0,0:0,-18.3628,-215.464,-18.3628,-215.464,-215.464 dDocent_Contig_2964 12 . T C 8665.6 . AB=0.759887;ABP=210.686;AC=3;AF=0.5;AN=6;AO=269;CIGAR=1X;DP=354;DPB=354;DPRA=0;EPP=587.136;EPPR=187.585;GTI=0;LEN=1;MEANALT=1;MQM=59.8439;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=10875;QR=3428;RO=85;RPL=0;RPP=587.136;RPPR=187.585;RPR=269;RUN=1;SAF=269;SAP=587.136;SAR=0;SRF=85;SRP=187.585;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:220:46,174:46:1854:174:7035:-566.493,0,-100.839 0/1:44:17,27:17:686:27:1089:-85.0499,0,-48.8248 0/1:90:22,68:22:888:68:2751:-220.54,0,-53.1352 dDocent_Contig_2965 15 . T A 1789.95 . AB=0.525862;ABP=3.68421;AC=3;AF=0.5;AN=6;AO=61;CIGAR=1X;DP=116;DPB=116;DPRA=0;EPP=135.47;EPPR=122.441;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=2428;QR=2216;RO=55;RPL=0;RPP=135.47;RPPR=122.441;RPR=61;RUN=1;SAF=61;SAP=135.47;SAR=0;SRF=55;SRP=122.441;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:60:22,38:22:879:38:1537:-120.505,0,-61.3563 0/1:22:12,10:12:490:10:385:-28.3749,0,-37.8285 0/1:34:21,13:21:847:13:506:-35.6385,0,-66.3044 dDocent_Contig_2966 25 . T C 111.608 . AB=0.175;ABP=39.7082;AC=1;AF=0.166667;AN=6;AO=15;CIGAR=1X;DP=237;DPB=237;DPRA=0;EPP=35.5824;EPPR=482.906;GTI=0;LEN=1;MEANALT=1.33333;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=578;QR=8535;RO=221;RPL=0;RPP=35.5824;RPPR=482.906;RPR=15;RUN=1;SAF=15;SAP=35.5824;SAR=0;SRF=221;SRP=482.906;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:138:133,4:133:5140:4:155:0,-27.2093,-448.245 0/1:40:33,7:33:1281:7:274:-12.9847,0,-103.527 0/0:59:55,4:55:2114:4:149:0,-3.98854,-176.692 dDocent_Contig_2967 12 . T C 63.6423 . AB=0;ABP=0;AC=2;AF=1;AN=2;AO=2;CIGAR=1X;DP=2;DPB=2;DPRA=0;EPP=7.35324;EPPR=0;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=0;NS=1;NUMALT=1;ODDS=5.99146;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=67;QR=0;RO=0;RPL=0;RPP=7.35324;RPPR=0;RPR=2;RUN=1;SAF=2;SAP=7.35324;SAR=0;SRF=0;SRP=0;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 1/1:2:0,2:0:0:2:67:-6.36314,-0.60206,0 ./.:.:.:.:.:.:.:. ./.:.:.:.:.:.:.:. dDocent_Contig_2968 11 . T C 268.759 . AB=0.268156;ABP=86.5817;AC=3;AF=0.5;AN=6;AO=48;CIGAR=1X;DP=179;DPB=179;DPRA=0;EPP=107.241;EPPR=253.79;GTI=0;LEN=1;MEANALT=1;MQM=23.1667;MQMR=59.9771;NS=3;NUMALT=1;ODDS=0;PAIRED=0;PAIREDR=0.290076;PAO=0;PQA=0;PQR=0;PRO=0;QA=1903;QR=5093;RO=131;RPL=0;RPP=107.241;RPPR=287.473;RPR=48;RUN=1;SAF=48;SAP=107.241;SAR=0;SRF=127;SRP=253.79;SRR=4;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:89:68,21:68:2656:21:827:-13.9114,0,-212.406 0/1:48:33,15:33:1270:15:599:-2.04009,0,-100.132 0/1:42:30,12:30:1167:12:477:-16.332,0,-92.6731 dDocent_Contig_2969 205 . T C 73.6424 . AB=0.128571;ABP=86.8912;AC=1;AF=0.166667;AN=6;AO=14;CIGAR=1X;DP=196;DPB=196;DPRA=0;EPP=33.4109;EPPR=398.218;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=510;QR=6569;RO=182;RPL=14;RPP=33.4109;RPPR=398.218;RPR=0;RUN=1;SAF=0;SAP=33.4109;SAR=14;SRF=0;SRP=398.218;SRR=182;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:70:61,9:61:2214:9:329:-8.88711,0,-178.445 0/0:78:76,2:76:2742:2:72:0,-16.6437,-240.178 0/0:48:45,3:45:1613:3:109:0,-4.28144,-135.283 dDocent_Contig_2970 10 . G A 739.318 . AB=0.294118;ABP=40.564;AC=3;AF=0.5;AN=6;AO=30;CIGAR=1X;DP=102;DPB=102;DPRA=0;EPP=68.1545;EPPR=159.356;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=1212;QR=2890;RO=72;RPL=0;RPP=68.1545;RPPR=159.356;RPR=30;RUN=1;SAF=30;SAP=68.1545;SAR=0;SRF=72;SRP=159.356;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:43:30,13:30:1194:13:523:-34.4717,0,-94.7918 0/1:30:22,8:22:889:8:323:-20.4077,0,-71.2868 0/1:29:20,9:20:807:9:366:-24.5753,0,-64.2149 dDocent_Contig_2971 9 . C T 489.364 . AB=0.415094;ABP=6.32897;AC=3;AF=0.5;AN=6;AO=22;CIGAR=1X;DP=53;DPB=53;DPRA=0;EPP=50.7827;EPPR=70.3259;GTI=0;LEN=1;MEANALT=1;MQM=51.8182;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=0.772727;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=844;QR=1190;RO=31;RPL=0;RPP=50.7827;RPPR=70.3259;RPR=22;RUN=1;SAF=22;SAP=50.7827;SAR=0;SRF=31;SRP=70.3259;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:25:16,9:16:612:9:343:-19.8359,0,-47.893 0/1:12:8,4:8:308:4:156:-9.40815,0,-24.4699 0/1:16:7,9:7:270:9:345:-25.2152,0,-19.849 dDocent_Contig_2972 10 . G A 104.901 . AB=0.181818;ABP=32.0291;AC=1;AF=0.166667;AN=6;AO=6;CIGAR=1X;DP=100;DPB=100;DPRA=0.985075;EPP=16.0391;EPPR=207.129;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=243;QR=3677;RO=94;RPL=0;RPP=16.0391;RPPR=207.129;RPR=6;RUN=1;SAF=6;SAP=16.0391;SAR=0;SRF=94;SRP=207.129;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:52:52,0:52:2019:0:0:0,-15.6536,-181.913 0/0:15:15,0:15:588:0:0:0,-4.51545,-53.2575 0/1:33:27,6:27:1070:6:243:-12.314,0,-86.6569 dDocent_Contig_2973 151 . G C 406.416 . AB=0.363636;ABP=10.1169;AC=1;AF=0.166667;AN=6;AO=16;CIGAR=1X;DP=70;DPB=70;DPRA=3.38462;EPP=37.7539;EPPR=120.27;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=612;QR=2067;RO=54;RPL=0;RPP=37.7539;RPPR=120.27;RPR=16;RUN=1;SAF=0;SAP=37.7539;SAR=16;SRF=0;SRP=120.27;SRR=54;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:44:28,16:28:1016:16:612:-42.1645,0,-78.4628 0/0:7:7,0:7:279:0:0:0,-2.10721,-25.4802 0/0:19:19,0:19:772:0:0:0,-5.71957,-69.7999 dDocent_Contig_2974 20 . T G 254.926 . AB=0.197183;ABP=59.5603;AC=3;AF=0.5;AN=6;AO=14;CIGAR=1X;DP=71;DPB=71;DPRA=0;EPP=33.4109;EPPR=126.784;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=557;QR=2283;RO=57;RPL=0;RPP=33.4109;RPPR=126.784;RPR=14;RUN=1;SAF=14;SAP=33.4109;SAR=0;SRF=57;SRP=126.784;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:35:27,8:27:1076:8:317:-18.3603,0,-86.5893 0/1:10:9,1:9:358:1:39:-0.886264,0,-29.5701 0/1:26:21,5:21:849:5:201:-10.6441,0,-68.8958 dDocent_Contig_2975 11 . C T 260.325 . AB=0.166667;ABP=20.3821;AC=1;AF=0.166667;AN=6;AO=3;CIGAR=6M1X3M;DP=80;DPB=78.7;DPRA=0;EPP=9.52472;EPPR=141.985;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=2;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=115;QR=2472;RO=64;RPL=0;RPP=9.52472;RPPR=141.985;RPR=3;RUN=1;SAF=3;SAP=9.52472;SAR=0;SRF=64;SRP=141.985;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|0:47:38,9,0:38:1479:9,0:338,0:-16.623,0,-119.232,-28.0621,-121.941,-149.625 0|1:18:15,0,3:15:566:0,3:0,115:-5.30619,-9.82164,-56.2004,0,-46.7608,-45.8577 0|0:15:11,4,0:11:427:4,0:153,0:-9.62616,0,-34.2691,-12.9375,-35.4732,-48.027 dDocent_Contig_2976 108 . N A 261.922 . AB=0;ABP=0;AC=6;AF=1;AN=6;AO=8;CIGAR=1X;DP=8;DPB=8;DPRA=0;EPP=20.3821;EPPR=0;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=0;NS=3;NUMALT=1;ODDS=1.69407e-21;PAIRED=1;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=273;QR=0;RO=0;RPL=0;RPP=20.3821;RPPR=0;RPR=8;RUN=1;SAF=0;SAP=20.3821;SAR=8;SRF=0;SRP=0;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 1/1:3:0,3:0:0:3:100:-9.33037,-0.90309,0 1/1:1:0,1:0:0:1:35:-3.49863,-0.30103,0 1/1:4:0,4:0:0:4:138:-12.7604,-1.20412,0 dDocent_Contig_2978 28 . G A 46.9698 . AB=0.125;ABP=51.8684;AC=1;AF=0.166667;AN=6;AO=9;CIGAR=1X;DP=194;DPB=194;DPRA=0.614943;EPP=22.5536;EPPR=396.047;GTI=0;LEN=1;MEANALT=1.5;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=365;QR=7073;RO=181;RPL=0;RPP=22.5536;RPPR=396.047;RPR=9;RUN=1;SAF=9;SAP=22.5536;SAR=0;SRF=181;SRP=396.047;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:87:84,0:84:3278:0:0:0,-25.2865,-294.719 0/1:40:35,5:35:1385:5:202:-6.52088,0,-112.875 0/0:67:62,4:62:2410:4:163:0,-5.19473,-202.009 dDocent_Contig_2979 22 . T A 39.3663 . AB=0.107692;ABP=89.9026;AC=1;AF=0.166667;AN=6;AO=7;CIGAR=1X;DP=135;DPB=135;DPRA=1.85714;EPP=18.2106;EPPR=280.959;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=0.992188;PAO=0;PQA=0;PQR=0;PRO=0;QA=274;QR=5121;RO=128;RPL=0;RPP=18.2106;RPPR=280.959;RPR=7;RUN=1;SAF=7;SAP=18.2106;SAR=0;SRF=128;SRP=280.959;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:65:58,7:58:2304:7:274:-5.45946,0,-187.942 0/0:41:41,0:41:1649:0:0:0,-12.3422,-148.634 0/0:29:29,0:29:1168:0:0:0,-8.72987,-105.394 dDocent_Contig_2981 14 . G A 12305.3 . AB=0.772908;ABP=327.762;AC=3;AF=0.5;AN=6;AO=388;CIGAR=1X;DP=502;DPB=502;DPRA=0;EPP=845.542;EPPR=250.558;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=0.991228;PAO=0;PQA=0;PQR=0;PRO=0;QA=15417;QR=4562;RO=114;RPL=0;RPP=845.542;RPPR=250.558;RPR=388;RUN=1;SAF=388;SAP=845.542;SAR=0;SRF=114;SRP=250.558;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:266:53,213:53:2130:213:8441:-679.175,0,-111.801 0/1:119:39,80:39:1548:80:3177:-250.181,0,-103.743 0/1:117:22,95:22:884:95:3799:-306.698,0,-44.6495 dDocent_Contig_2982 144 . T G 126.906 . AB=0.190476;ABP=37.9607;AC=2;AF=0.333333;AN=6;AO=10;CIGAR=1X;DP=58;DPB=58;DPRA=0;EPP=24.725;EPPR=107.241;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=351;QR=1840;RO=48;RPL=0;RPP=24.725;RPPR=107.241;RPR=10;RUN=1;SAF=0;SAP=24.725;SAR=10;SRF=0;SRP=107.241;SRR=48;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:20:18,2:18:693:2:82:-1.75908,0,-56.6584 0/0:16:14,2:14:539:2:39:0,-1.112,-45.1457 0/1:22:16,6:16:608:6:230:-14.4384,0,-48.4265 dDocent_Contig_2983 26 . A T 12586.4 . AB=0;ABP=0;AC=6;AF=1;AN=6;AO=399;CIGAR=1X;DP=419;DPB=419;DPRA=0;EPP=869.428;EPPR=44.2683;GTI=0;LEN=1;MEANALT=1.33333;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=14740;QR=750;RO=19;RPL=0;RPP=869.428;RPPR=44.2683;RPR=399;RUN=1;SAF=399;SAP=869.428;SAR=0;SRF=19;SRP=44.2683;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 1/1:191:12,178:12:468:178:6621:-553.365,-14.844,0 1/1:127:6,121:6:242:121:4405:-374.394,-16.0733,0 1/1:101:1,100:1:40:100:3714:-330.403,-26.4084,0 dDocent_Contig_2985 137 . T C 1453.51 . AB=0.521008;ABP=3.46649;AC=3;AF=0.5;AN=6;AO=62;CIGAR=1X;DP=119;DPB=119;DPRA=0;EPP=137.642;EPPR=126.784;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=2064;QR=1938;RO=57;RPL=0;RPP=137.642;RPPR=126.784;RPR=62;RUN=1;SAF=0;SAP=137.642;SAR=62;SRF=0;SRP=126.784;SRR=57;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:68:46,22:46:1556:22:750:-47.3467,0,-119.858 0/1:29:7,22:7:243:22:697:-54.2978,0,-13.479 0/1:22:4,18:4:139:18:617:-49.2291,0,-6.23003 dDocent_Contig_2986 35 . G A 14128.8 . AB=0.867769;ABP=145.161;AC=5;AF=0.833333;AN=6;AO=438;CIGAR=1X;DP=482;DPB=482;DPRA=0;EPP=954.115;EPPR=96.3836;GTI=0;LEN=1;MEANALT=1.33333;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=0;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=17238;QR=1700;RO=43;RPL=0;RPP=954.115;RPPR=96.3836;RPR=438;RUN=1;SAF=438;SAP=954.115;SAR=0;SRF=43;SRP=96.3836;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 1/1:286:22,264:22:872:264:10415:-857.914,-7.30102,0 1/1:75:6,69:6:235:69:2721:-223.505,-1.05704,0 0/1:121:15,105:15:593:105:4102:-332.986,0,-17.4963 dDocent_Contig_2987 41 . A T 1306.93 . AB=0.0746269;ABP=213.611;AC=0;AF=0;AN=6;AO=10;CIGAR=2M1X13M;DP=163;DPB=114;DPRA=0;EPP=24.725;EPPR=198.535;GTI=0;LEN=1;MEANALT=3;MQM=60;MQMR=60;NS=3;NUMALT=2;ODDS=1.38778e-17;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=396;QR=3696;RO=94;RPL=0;RPP=24.725;RPPR=198.535;RPR=10;RUN=1;SAF=10;SAP=24.725;SAR=0;SRF=94;SRP=207.129;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|0:105:59,35,9:59:2314:35,9:1263,356:-85.2591,0,-179.752,-73.716,-160.991,-261.317 0|0:29:16,12,1:16:633:12,1:435,40:-30.6604,0,-48.4791,-32.1789,-48.7961,-83.9922 0|0:29:19,9,0:19:749:9,0:320,0:-20.2964,0,-58.896,-26.016,-61.6052,-87.6579 dDocent_Contig_2988 7 . C A 851.475 . AB=0.417722;ABP=7.6556;AC=3;AF=0.5;AN=6;AO=33;CIGAR=1X;DP=79;DPB=79;DPRA=0;EPP=74.6689;EPPR=102.898;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=1260;QR=1778;RO=46;RPL=0;RPP=74.6689;RPPR=102.898;RPR=33;RUN=1;SAF=33;SAP=74.6689;SAR=0;SRF=46;SRP=102.898;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:22:8,14:8:306:14:536:-41.9608,0,-21.2778 0/1:14:8,6:8:307:6:226:-16.4869,0,-23.7768 0/1:43:30,13:30:1165:13:498:-32.2226,0,-92.2034 dDocent_Contig_2989 98 . N A 51.3001 . AB=0;ABP=0;AC=2;AF=1;AN=2;AO=2;CIGAR=1X;DP=2;DPB=2;DPRA=0;EPP=7.35324;EPPR=0;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=0;NS=1;NUMALT=1;ODDS=5.99146;PAIRED=1;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=54;QR=0;RO=0;RPL=2;RPP=7.35324;RPPR=0;RPR=0;RUN=1;SAF=2;SAP=7.35324;SAR=0;SRF=0;SRP=0;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL ./.:.:.:.:.:.:.:. 1/1:2:0,2:0:0:2:54:-5.12892,-0.60206,0 ./.:.:.:.:.:.:.:. dDocent_Contig_2990 18 . T A 7453.34 . AB=0.786667;ABP=56.5443;AC=5;AF=0.833333;AN=6;AO=224;CIGAR=1X;DP=249;DPB=249;DPRA=0;EPP=489.42;EPPR=57.2971;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=0.991071;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=8891;QR=946;RO=25;RPL=0;RPP=489.42;RPPR=57.2971;RPR=224;RUN=1;SAF=224;SAP=489.42;SAR=0;SRF=25;SRP=57.2971;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 1/1:106:3,103:3:115:103:4099:-358.173,-21.1847,0 0/1:75:16,59:16:609:59:2307:-185.224,0,-32.5693 1/1:68:6,62:6:222:62:2485:-203.458,-0.133475,0 dDocent_Contig_2991 7 . C T 10086.3 . AB=0.0483871;ABP=1650.53;AC=0;AF=0;AN=6;AO=45;CIGAR=2M1X2M1X1M2X1M;DP=930;DPB=890.3;DPRA=0;EPP=100.727;EPPR=501.15;GTI=0;LEN=1;MEANALT=22.3333;MQM=9.55556;MQMR=58.9398;NS=3;NUMALT=5;ODDS=0;PAIRED=0.0222222;PAIREDR=0.963855;PAO=0.2;PQA=3;PQR=3;PRO=0.2;QA=420;QR=9606;RO=249;RPL=0;RPP=100.727;RPPR=543.707;RPR=45;RUN=1;SAF=45;SAP=100.727;SAR=0;SRF=244;SRP=501.15;SRR=5;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|0:549:146,12,25,32,36,205:146:5644:12,25,32,36,205:460,216,1264,1288,7854:-600.648,-606.843,-1066.81,-638.312,-1064.13,-1094.36,-548.812,-974.635,-1006.1,-1002.76,-541.544,-967.366,-998.831,-909.336,-994.284,0,-425.837,-457.31,-367.806,-360.538,-401.882 0|0:125:42,3,6,7,3,49:42:1597:3,6,7,3,49:113,78,271,100,1864:-139.641,-143.024,-264.87,-148.613,-262.096,-269.55,-134.219,-247.708,-253.291,-254.861,-144.466,-257.955,-263.538,-249.15,-266.312,0,-113.51,-119.102,-104.706,-114.953,-108.021 0|0:256:61,15,14,10,13,93:61:2365:15,14,10,13,93:581,126,398,427,3567:-273.86,-244.49,-434.287,-288.417,-434.992,-478.509,-264.206,-410.786,-454.708,-455.508,-258.824,-405.404,-449.326,-425.12,-449.223,0,-146.593,-190.525,-166.31,-160.929,-166.331 dDocent_Contig_2992 7 . T C 3479.47 . AB=0.840708;ABP=116.945;AC=4;AF=0.666667;AN=6;AO=113;CIGAR=1X;DP=132;DPB=132;DPRA=0;EPP=248.387;EPPR=44.2683;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=4315;QR=704;RO=19;RPL=0;RPP=248.387;RPPR=44.2683;RPR=113;RUN=1;SAF=113;SAP=248.387;SAR=0;SRF=19;SRP=44.2683;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:52:9,43:9:334:43:1650:-133.11,0,-14.7568 0/1:61:9,52:9:333:52:1984:-160.44,0,-11.9567 1/1:19:1,18:1:37:18:681:-57.92,-2.02174,0 dDocent_Contig_2995 88 . G T 10310.8 . AB=0.872727;ABP=69.3784;AC=5;AF=0.833333;AN=6;AO=357;CIGAR=1X;DP=386;DPB=386;DPRA=0;EPP=778.226;EPPR=61.6401;GTI=0;LEN=1;MEANALT=1.66667;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=12348;QR=940;RO=27;RPL=357;RPP=778.226;RPPR=61.6401;RPR=0;RUN=1;SAF=357;SAP=778.226;SAR=0;SRF=27;SRP=61.6401;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 1/1:196:16,179:16:554:179:6272:-514.414,-8.60099,0 0/1:55:7,48:7:250:48:1636:-130.966,0,-6.29003 1/1:135:4,130:4:136:130:4440:-387.222,-28.1101,0 dDocent_Contig_2996 116 . G A 404.68 . AB=0.461538;ABP=3.51141;AC=3;AF=0.5;AN=6;AO=18;CIGAR=1X;DP=39;DPB=39;DPRA=0;EPP=42.0968;EPPR=48.6112;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=623;QR=634;RO=21;RPL=0;RPP=42.0968;RPPR=48.6112;RPR=18;RUN=1;SAF=0;SAP=42.0968;SAR=18;SRF=0;SRP=48.6112;SRR=21;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:6:1,5:1:32:5:175:-14.2875,0,-1.39313 0/1:21:13,8:13:419:8:273:-18.5808,0,-31.6985 0/1:12:7,5:7:183:5:175:-12.4813,0,-13.1153 dDocent_Contig_2997 8 . C A 754.961 . AB=0.22093;ABP=119.361;AC=2;AF=0.333333;AN=6;AO=39;CIGAR=1X;DP=224;DPB=224;DPRA=0;EPP=87.6977;EPPR=404.733;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=1.38778e-17;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=1484;QR=7104;RO=185;RPL=0;RPP=87.6977;RPPR=404.733;RPR=39;RUN=1;SAF=39;SAP=87.6977;SAR=0;SRF=185;SRP=404.733;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:119:90,29:90:3467:29:1109:-64.2902,0,-276.334 0/0:52:51,1:51:1945:1:38:0,-11.8563,-171.494 0/1:53:44,9:44:1692:9:337:-14.7288,0,-136.585 dDocent_Contig_2998 98 . N C 1382.83 . AB=0;ABP=0;AC=6;AF=1;AN=6;AO=44;CIGAR=1X;DP=44;DPB=44;DPRA=0;EPP=98.5551;EPPR=0;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=0;NS=3;NUMALT=1;ODDS=1.69407e-21;PAIRED=1;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=1519;QR=0;RO=0;RPL=44;RPP=98.5551;RPPR=0;RPR=0;RUN=1;SAF=44;SAP=98.5551;SAR=0;SRF=0;SRP=0;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 1/1:32:0,32:0:0:32:1107:-99.9382,-9.63296,0 1/1:3:0,3:0:0:3:98:-9.14424,-0.90309,0 1/1:9:0,9:0:0:9:314:-28.5979,-2.70927,0 dDocent_Contig_2999 12 . C T 909.426 . AB=0.242604;ABP=100.264;AC=3;AF=0.5;AN=6;AO=41;CIGAR=1X;DP=169;DPB=169;DPRA=0;EPP=92.0407;EPPR=278.787;GTI=0;LEN=1;MEANALT=1.33333;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=1.38778e-17;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=1627;QR=5040;RO=127;RPL=0;RPP=92.0407;RPPR=278.787;RPR=41;RUN=1;SAF=41;SAP=92.0407;SAR=0;SRF=127;SRP=278.787;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:78:55,22:55:2176:22:889:-56.7301,0,-172.422 0/1:61:48,13:48:1896:13:495:-26.5186,0,-152.481 0/1:30:24,6:24:968:6:243:-13.2167,0,-78.3882 dDocent_Contig_3000 106 . N A 799.783 . AB=0;ABP=0;AC=6;AF=1;AN=6;AO=27;CIGAR=2X;DP=27;DPB=27;DPRA=0;EPP=61.6401;EPPR=0;GTI=0;LEN=1;MEANALT=1;MQM=58.7037;MQMR=0;NS=3;NUMALT=1;ODDS=1.69407e-21;PAIRED=0.814815;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=873;QR=0;RO=0;RPL=0;RPP=61.6401;RPPR=0;RPR=27;RUN=1;SAF=0;SAP=61.6401;SAR=27;SRF=0;SRP=0;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 1|1:10:0,10:0:0:10:318:-28.9287,-3.0103,0 1|1:9:0,9:0:0:9:295:-26.8654,-2.70927,0 1|1:8:0,8:0:0:8:260:-23.7071,-2.40824,0 dDocent_Contig_3001 107 . N G 452.064 . AB=0;ABP=0;AC=6;AF=1;AN=6;AO=15;CIGAR=1X;DP=15;DPB=15;DPRA=0;EPP=35.5824;EPPR=0;GTI=0;LEN=1;MEANALT=1;MQM=42.4;MQMR=0;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=495;QR=0;RO=0;RPL=0;RPP=35.5824;RPPR=0;RPR=15;RUN=1;SAF=0;SAP=35.5824;SAR=15;SRF=0;SRP=0;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 1/1:7:0,7:0:0:7:238:-21.3739,-2.10721,0 1/1:2:0,2:0:0:2:69:-6.41929,-0.60206,0 1/1:6:0,6:0:0:6:188:-16.9356,-1.80618,0 dDocent_Contig_3002 11 . C T 301.369 . AB=0.116667;ABP=385.913;AC=3;AF=0.5;AN=6;AO=35;CIGAR=1X;DP=300;DPB=300;DPRA=0;EPP=79.0118;EPPR=578.45;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=59.9925;NS=3;NUMALT=1;ODDS=0;PAIRED=0.971429;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=1388;QR=10507;RO=265;RPL=0;RPP=79.0118;RPPR=578.45;RPR=35;RUN=1;SAF=35;SAP=79.0118;SAR=0;SRF=265;SRP=578.45;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:190:173,17:173:6893:17:668:-3.24824,0,-562.866 0/1:38:33,5:33:1316:5:194:-6.39056,0,-107.264 0/1:72:59,13:59:2298:13:526:-26.0128,0,-185.308 dDocent_Contig_3003 9 . A T 44.8113 . AB=0.0992366;ABP=185.762;AC=2;AF=0.333333;AN=6;AO=15;CIGAR=1X;DP=258;DPB=258;DPRA=0;EPP=35.5824;EPPR=530.678;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=6.93889e-18;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=581;QR=9284;RO=243;RPL=0;RPP=35.5824;RPPR=530.678;RPR=15;RUN=1;SAF=15;SAP=35.5824;SAR=0;SRF=243;SRP=530.678;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:127:125,2:125:4769:2:78:0,-30.8273,-421.85 0/1:38:33,5:33:1258:5:193:-6.30235,0,-102.072 0/1:93:85,8:85:3257:8:310:-0.267917,0,-265.282 dDocent_Contig_3004 13 . G A 8596.01 . AB=0.379518;ABP=107.66;AC=3;AF=0.5;AN=6;AO=315;CIGAR=1X;DP=830;DPB=830;DPRA=0;EPP=687.024;EPPR=1104.01;GTI=0;LEN=1;MEANALT=1;MQM=58.2444;MQMR=41.4;NS=3;NUMALT=1;ODDS=5.55112e-17;PAIRED=1;PAIREDR=0.972816;PAO=0;PQA=0;PQR=0;PRO=0;QA=12616;QR=20491;RO=515;RPL=0;RPP=687.024;RPPR=1121.32;RPR=315;RUN=1;SAF=315;SAP=687.024;SAR=0;SRF=513;SRP=1104.01;SRR=2;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:474:309,165:309:12355:165:6612:-441.863,0,-862.269 0/1:126:62,64:62:2391:64:2567:-185.707,0,-166.898 0/1:230:144,86:144:5745:86:3437:-237.554,0,-408.123 dDocent_Contig_3005 8 . C A 167.746 . AB=0.153846;ABP=97.7199;AC=2;AF=0.333333;AN=6;AO=14;CIGAR=1X;DP=119;DPB=119;DPRA=1.625;EPP=33.4109;EPPR=231.015;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=522;QR=4012;RO=105;RPL=0;RPP=33.4109;RPPR=231.015;RPR=14;RUN=1;SAF=14;SAP=33.4109;SAR=0;SRF=105;SRP=231.015;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:58:51,7:51:1949:7:260:-6.29526,0,-158.195 0/1:33:26,7:26:990:7:262:-14.0022,0,-79.4772 0/0:28:28,0:28:1073:0:0:0,-8.42884,-96.8734 dDocent_Contig_3006 11 . T G 3367.07 . AB=0.097561;ABP=176.04;AC=3;AF=0.5;AN=6;AO=12;CIGAR=4X;DP=197;DPB=197;DPRA=0;EPP=29.068;EPPR=124.613;GTI=0;LEN=1;MEANALT=2.5;MQM=60;MQMR=60;NS=3;NUMALT=3;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=459;QR=2229;RO=56;RPL=0;RPP=29.068;RPPR=124.613;RPR=12;RUN=1;SAF=12;SAP=29.068;SAR=0;SRF=56;SRP=124.613;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|1:85:28,54,3,0:28:1115:54,3,0:2160,111,0:-169.526,0,-75.5793,-168.876,-82.7574,-259.782,-177.955,-91.8349,-260.685,-269.765 0|1:38:12,12,9,5:12:469:12,9,5:468,348,194:-34.8571,0,-34.9431,-9.89036,-9.97656,-45.7354,-22.5338,-22.6199,-32.5093,-59.5832 0|1:74:16,44,0,14:16:645:44,0,14:1734,0,529:-137.846,0,-39.9331,-142.663,-53.1784,-195.831,-99.317,-9.84053,-152.484,-148.27 dDocent_Contig_3007 25 . T C 670.901 . AB=0.221477;ABP=103.408;AC=2;AF=0.333333;AN=6;AO=34;CIGAR=1X;DP=254;DPB=254;DPRA=0;EPP=76.8404;EPPR=478.563;GTI=0;LEN=1;MEANALT=1.33333;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=1.38778e-17;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=1309;QR=8638;RO=219;RPL=0;RPP=76.8404;RPPR=478.563;RPR=34;RUN=1;SAF=34;SAP=76.8404;SAR=0;SRF=219;SRP=478.563;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:105:104,1:104:4076:1:32:0,-28.4088,-363.637 0/1:77:68,9:68:2689:9:344:-8.1307,0,-218.967 0/1:72:47,24:47:1873:24:933:-62.4823,0,-146.998 dDocent_Contig_3008 7 . C A 1121.55 . AB=0.120151;ABP=1327.69;AC=3;AF=0.5;AN=6;AO=127;CIGAR=1X;DP=1057;DPB=1057;DPRA=0;EPP=278.787;EPPR=2020.31;GTI=0;LEN=1;MEANALT=1.33333;MQM=60;MQMR=58.8224;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=4832;QR=35551;RO=929;RPL=0;RPP=278.787;RPPR=2020.31;RPR=127;RUN=1;SAF=127;SAP=278.787;SAR=0;SRF=929;SRP=2020.31;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:506:455,51:455:17403:51:1969:-25.1259,0,-1409.39 0/1:264:231,32:231:8808:32:1200:-29.0171,0,-712.122 0/1:287:243,44:243:9340:44:1663:-63.5354,0,-752.543 dDocent_Contig_3010 23 . A T 96.6065 . AB=0.145833;ABP=55.3066;AC=1;AF=0.166667;AN=6;AO=7;CIGAR=1X;DP=122;DPB=122;DPRA=1.2973;EPP=18.2106;EPPR=252.73;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=284;QR=4619;RO=115;RPL=0;RPP=18.2106;RPPR=252.73;RPR=7;RUN=1;SAF=7;SAP=18.2106;SAR=0;SRF=115;SRP=252.73;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:57:57,0:57:2290:0:0:0,-17.1587,-206.256 0/0:17:17,0:17:673:0:0:0,-5.11751,-60.8991 0/1:48:41,7:41:1656:7:284:-11.4846,0,-134.811 dDocent_Contig_3011 28 . T C 1724.59 . AB=0.575758;ABP=7.94546;AC=3;AF=0.5;AN=6;AO=57;CIGAR=1X;DP=99;DPB=99;DPRA=0;EPP=126.784;EPPR=92.0407;GTI=0;LEN=1;MEANALT=1.33333;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=6.93889e-18;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=2296;QR=1647;RO=41;RPL=0;RPP=126.784;RPPR=92.0407;RPR=57;RUN=1;SAF=57;SAP=126.784;SAR=0;SRF=41;SRP=92.0407;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:62:29,33:29:1162:33:1326:-100.935,0,-86.1936 0/1:19:3,15:3:119:15:606:-49.3409,0,-5.5019 0/1:18:9,9:9:366:9:364:-27.7064,0,-27.8866 dDocent_Contig_3012 20 . C A 50.9132 . AB=0.166667;ABP=26.1727;AC=1;AF=0.166667;AN=6;AO=4;CIGAR=1X;DP=209;DPB=209;DPRA=0.259459;EPP=11.6962;EPPR=448.162;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=153;QR=8224;RO=205;RPL=0;RPP=11.6962;RPPR=448.162;RPR=4;RUN=1;SAF=4;SAP=11.6962;SAR=0;SRF=205;SRP=448.162;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:133:133,0:133:5349:0:0:0,-40.037,-481.244 0/1:24:20,4:20:785:4:153:-6.91522,0,-63.745 0/0:52:52,0:52:2090:0:0:0,-15.6536,-188.28 dDocent_Contig_3013 137 . T C 35.7176 . AB=0.214286;ABP=12.937;AC=1;AF=0.166667;AN=6;AO=3;CIGAR=1X;DP=68;DPB=68;DPRA=0.518519;EPP=9.52472;EPPR=144.156;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=103;QR=2237;RO=65;RPL=0;RPP=9.52472;RPPR=144.156;RPR=3;RUN=1;SAF=0;SAP=9.52472;SAR=3;SRF=0;SRP=144.156;SRR=65;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:43:43,0:43:1492:0:0:0,-12.9443,-134.576 0/0:11:11,0:11:366:0:0:0,-3.31133,-33.2618 0/1:14:11,3:11:379:3:103:-5.39555,0,-30.2272 dDocent_Contig_3014 17 . T C 4037.37 . AB=0.558333;ABP=10.1038;AC=3;AF=0.5;AN=6;AO=134;CIGAR=1X;DP=240;DPB=240;DPRA=0;EPP=293.988;EPPR=233.186;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=5343;QR=4228;RO=106;RPL=0;RPP=293.988;RPPR=233.186;RPR=134;RUN=1;SAF=134;SAP=293.988;SAR=0;SRF=106;SRP=233.186;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:136:75,61:75:3012:61:2430:-177.905,0,-230.223 0/1:25:5,20:5:190:20:791:-63.9784,0,-9.93717 0/1:79:26,53:26:1026:53:2122:-167.376,0,-68.8548 dDocent_Contig_3016 32 . T G 7999.37 . AB=0.817352;ABP=194.586;AC=4;AF=0.666667;AN=6;AO=248;CIGAR=1X;DP=293;DPB=293;DPRA=0;EPP=541.535;EPPR=98.5551;GTI=0;LEN=1;MEANALT=1.33333;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=9856;QR=1746;RO=44;RPL=0;RPP=541.535;RPPR=98.5551;RPR=248;RUN=1;SAF=248;SAP=541.535;SAR=0;SRF=44;SRP=98.5551;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:169:30,138:30:1199:138:5494:-443.592,0,-57.4925 0/1:50:9,41:9:351:41:1610:-130.085,0,-16.8971 1/1:74:5,69:5:196:69:2752:-229.782,-4.26338,0 dDocent_Contig_3017 49 . T C 354.564 . AB=0.238806;ABP=42.7126;AC=2;AF=0.333333;AN=6;AO=23;CIGAR=1X;DP=161;DPB=161;DPRA=0;EPP=52.9542;EPPR=302.673;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=6.93889e-18;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=932;QR=5548;RO=138;RPL=0;RPP=52.9542;RPPR=302.673;RPR=23;RUN=1;SAF=23;SAP=52.9542;SAR=0;SRF=138;SRP=302.673;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:94:87,7:87:3499:7:283:0,-2.45382,-289.095 0/1:36:29,7:29:1173:7:287:-15.3682,0,-95.0096 0/1:31:22,9:22:876:9:362:-23.6111,0,-69.8143 dDocent_Contig_3019 40 . T C 1404.65 . AB=0.0892857;ABP=167.112;AC=0;AF=0;AN=6;AO=10;CIGAR=1X2M1X;DP=112;DPB=112;DPRA=0;EPP=24.725;EPPR=111.584;GTI=0;LEN=1;MEANALT=2.33333;MQM=60;MQMR=60;NS=3;NUMALT=2;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=381;QR=1841;RO=50;RPL=0;RPP=24.725;RPPR=111.584;RPR=10;RUN=1;SAF=10;SAP=24.725;SAR=0;SRF=50;SRP=111.584;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|0:67:38,5,23:38:1405:5,23:195,889:-61.6142,-57.0225,-170.441,0,-98.9223,-108.03 0|0:20:7,3,10:7:249:3,10:111,377:-28.7933,-21.8219,-41.2,0,-11.1955,-17.2697 0|0:25:5,2,18:5:187:2,18:75,695:-55.5802,-50.9431,-65.6521,0,-9.16937,-9.89441 dDocent_Contig_3020 148 . G A 1190.08 . AB=0.581081;ABP=7.23587;AC=3;AF=0.5;AN=6;AO=43;CIGAR=1X;DP=74;DPB=74;DPRA=0;EPP=96.3836;EPPR=70.3259;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=6.93889e-18;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=1620;QR=1209;RO=31;RPL=0;RPP=96.3836;RPPR=70.3259;RPR=43;RUN=1;SAF=0;SAP=96.3836;SAR=43;SRF=0;SRP=70.3259;SRR=31;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:28:12,16:12:450:16:586:-44.6351,0,-32.4092 0/1:26:12,14:12:481:14:535:-40.6631,0,-35.8141 0/1:20:7,13:7:278:13:499:-39.2327,0,-19.3692 dDocent_Contig_3021 12 . G A 11500.9 . AB=0.903226;ABP=134.349;AC=5;AF=0.833333;AN=6;AO=335;CIGAR=1X;DP=350;DPB=350;DPRA=0;EPP=730.454;EPPR=35.5824;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=13348;QR=601;RO=15;RPL=0;RPP=730.454;RPPR=35.5824;RPR=335;RUN=1;SAF=335;SAP=730.454;SAR=0;SRF=15;SRP=35.5824;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 1/1:205:6,199:6:235:199:7944:-693.011,-40.193,0 1/1:52:0,52:0:0:52:2043:-184.067,-15.6536,0 0/1:93:9,84:9:366:84:3361:-274.535,0,-5.30937 dDocent_Contig_3022 73 . T G 1794.48 . AB=0.597403;ABP=9.35551;AC=4;AF=0.666667;AN=6;AO=66;CIGAR=1X;DP=97;DPB=97;DPRA=0;EPP=146.327;EPPR=70.3259;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=2280;QR=1085;RO=31;RPL=66;RPP=146.327;RPPR=70.3259;RPR=0;RUN=1;SAF=66;SAP=146.327;SAR=0;SRF=31;SRP=70.3259;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:56:21,35:21:741:35:1213:-92.6119,0,-50.1564 1/1:20:0,20:0:0:20:681:-61.605,-6.0206,0 0/1:21:10,11:10:344:11:386:-28.7544,0,-24.9695 dDocent_Contig_3023 117 . A G 250.998 . AB=0.448276;ABP=3.68421;AC=2;AF=0.333333;AN=6;AO=14;CIGAR=1X;DP=45;DPB=45;DPRA=0;EPP=33.4109;EPPR=70.3259;GTI=0;LEN=1;MEANALT=1;MQM=49.8571;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=0;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=461;QR=1032;RO=31;RPL=0;RPP=33.4109;RPPR=70.3259;RPR=14;RUN=1;SAF=0;SAP=33.4109;SAR=14;SRF=0;SRP=70.3259;SRR=31;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:16:15,1:15:504:1:35:0,-1.33,-42.1949 0/1:13:8,5:8:250:5:167:-11.4324,0,-18.893 0/1:16:8,8:8:278:8:259:-17.1902,0,-20.5415 dDocent_Contig_3024 14 . T C 3936.77 . AB=0.8;ABP=124.178;AC=3;AF=0.5;AN=6;AO=124;CIGAR=1X;DP=155;DPB=155;DPRA=0;EPP=272.273;EPPR=70.3259;GTI=0;LEN=1;MEANALT=1;MQM=59.7581;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=4956;QR=1229;RO=31;RPL=0;RPP=272.273;RPPR=70.3259;RPR=124;RUN=1;SAF=124;SAP=272.273;SAR=0;SRF=31;SRP=70.3259;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:80:11,69:11:427:69:2738:-221.591,0,-14.6996 0/1:41:9,32:9:364:32:1294:-104.381,0,-20.7827 0/1:34:11,23:11:438:23:924:-73.2277,0,-29.5399 dDocent_Contig_3025 26 . G T 30.2251 . AB=0.121951;ABP=53.9075;AC=2;AF=0.333333;AN=6;AO=5;CIGAR=1X;DP=51;DPB=51;DPRA=2.05;EPP=13.8677;EPPR=102.898;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=201;QR=1829;RO=46;RPL=0;RPP=13.8677;RPPR=102.898;RPR=5;RUN=1;SAF=5;SAP=13.8677;SAR=0;SRF=46;SRP=102.898;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:31:28,3:28:1114:3:119:-1.76257,0,-91.2109 0/1:10:8,2:8:320:2:82:-4.76938,0,-26.1559 0/0:10:10,0:10:395:0:0:0,-3.0103,-35.9054 dDocent_Contig_3026 9 . A C 185.521 . AB=0.204082;ABP=40.2799;AC=1;AF=0.166667;AN=6;AO=10;CIGAR=1X;DP=106;DPB=106;DPRA=1.7193;EPP=24.725;EPPR=211.472;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=0.958333;PAO=0;PQA=0;PQR=0;PRO=0;QA=383;QR=3669;RO=96;RPL=0;RPP=24.725;RPPR=211.472;RPR=10;RUN=1;SAF=10;SAP=24.725;SAR=0;SRF=96;SRP=211.472;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:49:39,10:39:1501:10:383:-20.0749,0,-120.615 0/0:18:18,0:18:677:0:0:0,-5.41854,-61.2613 0/0:39:39,0:39:1491:0:0:0,-11.7402,-134.467 dDocent_Contig_3027 83 . T C 1888.4 . AB=0.506944;ABP=3.07062;AC=3;AF=0.5;AN=6;AO=73;CIGAR=1X2M;DP=144;DPB=144.333;DPRA=0;EPP=161.528;EPPR=141.985;GTI=0;LEN=1;MEANALT=1.66667;MQM=60;MQMR=60;NS=3;NUMALT=2;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=2615;QR=2293;RO=64;RPL=73;RPP=161.528;RPPR=141.985;RPR=0;RUN=1;SAF=73;SAP=161.528;SAR=0;SRF=64;SRP=141.985;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|1:69:36,6,27:36:1304:6,27:206,980:-69.2033,-63.3178,-167.972,0,-89.7534,-98.3491 0|1:33:17,0,16:17:599:0,16:0,562:-40.9688,-46.0863,-94.8521,0,-49.1174,-44.3009 0|1:42:11,0,30:11:390:0,30:0,1073:-84.1906,-87.502,-119.275,0,-31.7777,-22.7468 dDocent_Contig_3028 11 . A C 446.819 . AB=0.28169;ABP=32.4016;AC=3;AF=0.5;AN=6;AO=20;CIGAR=1X3M1X;DP=71;DPB=71;DPRA=0;EPP=46.4397;EPPR=113.755;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=3.46945e-18;PAIRED=1;PAIREDR=0.980392;PAO=0;PQA=0;PQR=0;PRO=0;QA=783;QR=2014;RO=51;RPL=0;RPP=46.4397;RPPR=113.755;RPR=20;RUN=1;SAF=20;SAP=46.4397;SAR=0;SRF=51;SRP=113.755;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|1:32:20,12:20:791:12:466:-32.6543,0,-61.8774 0|1:27:23,4:23:903:4:160:-6.65562,0,-73.4518 0|1:12:8,4:8:320:4:157:-10.8948,0,-25.5559 dDocent_Contig_3029 19 . G A 1086.68 . AB=0.195122;ABP=234.722;AC=3;AF=0.5;AN=6;AO=56;CIGAR=1X;DP=287;DPB=287;DPRA=0;EPP=124.613;EPPR=504.62;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=1.38778e-17;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=2218;QR=9150;RO=231;RPL=0;RPP=124.613;RPPR=504.62;RPR=56;RUN=1;SAF=56;SAP=124.613;SAR=0;SRF=231;SRP=504.62;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:177:144,33:144:5680:33:1300:-63.9804,0,-457.723 0/1:31:20,11:20:804:11:437:-30.3502,0,-63.346 0/1:79:67,12:67:2666:12:481:-19.86,0,-216.281 dDocent_Contig_3030 121 . G T 56.8137 . AB=0.123711;ABP=122.307;AC=2;AF=0.333333;AN=6;AO=13;CIGAR=1X;DP=131;DPB=131;DPRA=0;EPP=31.2394;EPPR=259.244;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=454;QR=4045;RO=118;RPL=0;RPP=31.2394;RPPR=259.244;RPR=13;RUN=1;SAF=0;SAP=31.2394;SAR=13;SRF=0;SRP=259.244;SRR=118;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:84:75,9:75:2585:9:313:-3.21998,0,-207.622 0/1:13:10,3:10:328:3:106:-5.97562,0,-25.9248 0/0:34:33,1:33:1132:1:35:0,-6.73639,-98.6876 dDocent_Contig_3032 29 . A T 145.228 . AB=0.3;ABP=9.95901;AC=1;AF=0.166667;AN=6;AO=8;CIGAR=1X;DP=66;DPB=66;DPRA=1.85714;EPP=20.3821;EPPR=128.956;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=323;QR=2302;RO=58;RPL=0;RPP=20.3821;RPPR=128.956;RPR=8;RUN=1;SAF=8;SAP=20.3821;SAR=0;SRF=58;SRP=128.956;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:20:14,6:14:562:6:241:-16.0457,0,-44.9026 0/0:32:30,2:30:1184:2:82:0,-1.85328,-99.0652 0/0:14:14,0:14:556:0:0:0,-4.21442,-50.3838 dDocent_Contig_3033 10 . G A 1360.37 . AB=0.118644;ABP=152.069;AC=0;AF=0;AN=6;AO=14;CIGAR=1X1M1X2M;DP=145;DPB=145;DPRA=0;EPP=33.4109;EPPR=92.0407;GTI=0;LEN=1;MEANALT=5.5;MQM=60;MQMR=60;NS=3;NUMALT=5;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=519;QR=1573;RO=41;RPL=0;RPP=33.4109;RPPR=92.0407;RPR=14;RUN=1;SAF=14;SAP=33.4109;SAR=0;SRF=41;SRP=92.0407;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|0:74:25,11,3,6,25,3:25:954:11,3,6,25,3:404,117,234,958,108:-71.1034,-45.6114,-120.562,-69.1744,-114.419,-146.534,-59.4195,-104.665,-128.228,-135.877,0,-45.2486,-68.8117,-59.0567,-70.7408,-70.628,-115.872,-139.435,-129.681,-70.2653,-147.987 0|0:27:8,0,5,4,10,0:8:313:0,5,4,10,0:0,193,145,378,0:-28.5793,-30.9875,-56.7281,-15.3903,-41.1327,-39.6276,-19.2846,-45.0245,-29.4301,-43.8204,0,-25.7452,-10.1501,-14.0446,-22.7349,-30.9875,-56.7281,-41.1327,-45.0245,-25.7452,-56.7281 0|0:44:8,3,6,4,14,9:8:306:3,6,4,14,9:115,237,154,539,204:-41.8773,-34.8427,-59.0594,-25.1376,-40.8169,-48.4532,-31.6591,-47.3374,-37.6334,-55.5753,0,-15.6852,-5.97714,-12.5008,-20.9157,-31.0572,-46.7284,-37.0283,-43.5463,-11.9109,-53.4577 dDocent_Contig_3034 93 . A T 81.6348 . AB=0.148649;ABP=82.3571;AC=1;AF=0.166667;AN=6;AO=18;CIGAR=1X;DP=283;DPB=283;DPRA=0;EPP=42.0968;EPPR=578.45;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=6.93889e-18;PAIRED=1;PAIREDR=0.981132;PAO=0;PQA=0;PQR=0;PRO=0;QA=585;QR=8769;RO=265;RPL=18;RPP=42.0968;RPPR=578.45;RPR=0;RUN=1;SAF=18;SAP=42.0968;SAR=0;SRF=265;SRP=578.45;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:178:173,5:173:5703:5:160:0,-38.8676,-498.723 0/0:31:29,2:29:965:2:70:0,-2.68453,-80.5044 0/1:74:63,11:63:2101:11:355:-9.98739,0,-167.083 dDocent_Contig_3035 11 . C T 124.541 . AB=0.144737;ABP=86.3263;AC=1;AF=0.166667;AN=6;AO=23;CIGAR=1X;DP=295;DPB=295;DPRA=0;EPP=30.2953;EPPR=591.479;GTI=0;LEN=1;MEANALT=1.33333;MQM=60;MQMR=57.9077;NS=3;NUMALT=1;ODDS=0;PAIRED=0.956522;PAIREDR=0.332103;PAO=0;PQA=0;PQR=0;PRO=0;QA=868;QR=10761;RO=271;RPL=0;RPP=52.9542;RPPR=591.479;RPR=23;RUN=1;SAF=20;SAP=30.2953;SAR=3;SRF=271;SRP=591.479;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:148:140,8:140:5570:8:306:0,-16.6517,-472.125 0/0:71:66,4:66:2600:4:153:0,-7.33436,-218.29 0/1:76:65,11:65:2591:11:409:-14.278,0,-207.539 dDocent_Contig_3036 115 . A G 119.748 . AB=0.0472441;ABP=229.134;AC=0;AF=0;AN=6;AO=6;CIGAR=1X1M1X;DP=159;DPB=159;DPRA=1.98438;EPP=16.0391;EPPR=285.302;GTI=0;LEN=1;MEANALT=3;MQM=60;MQMR=60;NS=3;NUMALT=3;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=202;QR=4333;RO=130;RPL=0;RPP=16.0391;RPPR=285.302;RPR=6;RUN=1;SAF=0;SAP=16.0391;SAR=6;SRF=0;SRP=285.302;SRR=130;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|0:82:65,3,4,10:65:2187:3,4,10:97,138,345:-8.46699,-20.2131,-196.498,-16.8213,-186.189,-192.809,0,-169.372,-165.984,-174.185 0|0:32:30,0,2,0:30:988:0,2,0:0,70,0:0,-9.0309,-88.872,-2.98556,-83.1752,-82.5731,-9.0309,-88.872,-83.1752,-88.872 0|0:45:35,3,6,0:35:1158:3,6,0:105,215,0:-7.03074,-9.018,-101.764,0,-85.1273,-91.8661,-17.5668,-102.667,-93.6723,-111.211 dDocent_Contig_3038 194 . A C 74.4838 . AB=0.222222;ABP=15.074;AC=1;AF=0.166667;AN=6;AO=4;CIGAR=1X;DP=54;DPB=54;DPRA=1;EPP=11.6962;EPPR=111.584;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=159;QR=1963;RO=50;RPL=4;RPP=11.6962;RPPR=111.584;RPR=0;RUN=1;SAF=0;SAP=11.6962;SAR=4;SRF=0;SRP=111.584;SRR=50;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:17:17,0:17:671:0:0:0,-5.11751,-60.7182 0/1:18:14,4:14:544:4:159:-9.27229,0,-43.8811 0/0:19:19,0:19:748:0:0:0,-5.71957,-67.6421 dDocent_Contig_3039 23 . G C 48.9716 . AB=0.137931;ABP=36.0317;AC=1;AF=0.166667;AN=6;AO=5;CIGAR=1X;DP=66;DPB=66;DPRA=3.16667;EPP=13.8677;EPPR=135.47;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=205;QR=2411;RO=61;RPL=0;RPP=13.8677;RPPR=135.47;RPR=5;RUN=1;SAF=5;SAP=13.8677;SAR=0;SRF=61;SRP=135.47;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:29:25,4:25:1010:4:164:-6.42003,0,-82.4652 0/0:28:27,1:27:1052:1:41:0,-4.33427,-90.8815 0/0:9:9,0:9:349:0:0:0,-2.70927,-31.7659 dDocent_Contig_3040 41 . G C 14028 . AB=0;ABP=0;AC=0;AF=0;AN=6;AO=4;CIGAR=2X;DP=433;DPB=433;DPRA=0.303191;EPP=11.6962;EPPR=37.7539;GTI=0;LEN=1;MEANALT=2;MQM=60;MQMR=60;NS=3;NUMALT=2;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=157;QR=596;RO=16;RPL=0;RPP=11.6962;RPPR=37.7539;RPR=4;RUN=1;SAF=4;SAP=11.6962;SAR=0;SRF=16;SRP=37.7539;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|0:251:5,0,245:5:192:0,245:0,9634:-848.927,-850.432,-866.193,-57.7468,-73.7524,0 0|0:57:1,4,52:1:23:4,52:157,2033:-180.74,-168.129,-168.69,-13.9171,-2.6116,0 0|0:125:10,0,115:10:381:0,115:0,4526:-372.661,-375.671,-406.922,-2.9861,-34.6185,0 dDocent_Contig_3041 98 . N A 125.761 . AB=0;ABP=0;AC=2;AF=1;AN=2;AO=4;CIGAR=1X;DP=4;DPB=4;DPRA=0;EPP=11.6962;EPPR=0;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=0;NS=1;NUMALT=1;ODDS=7.37776;PAIRED=1;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=136;QR=0;RO=0;RPL=4;RPP=11.6962;RPPR=0;RPR=0;RUN=1;SAF=4;SAP=11.6962;SAR=0;SRF=0;SRP=0;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL ./.:.:.:.:.:.:.:. 1/1:4:0,4:0:0:4:136:-12.5758,-1.20412,0 ./.:.:.:.:.:.:.:. dDocent_Contig_3042 11 . A G 842.952 . AB=0.134969;ABP=568.965;AC=3;AF=0.5;AN=6;AO=66;CIGAR=1X;DP=489;DPB=489;DPRA=0;EPP=146.327;EPPR=921.543;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=2623;QR=16937;RO=423;RPL=0;RPP=146.327;RPPR=921.543;RPR=66;RUN=1;SAF=66;SAP=146.327;SAR=0;SRF=423;SRP=921.543;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:313:269,44:269:10787:44:1760:-64.3918,0,-875.857 0/1:51:40,11:40:1609:11:421:-22.8792,0,-129.689 0/1:125:114,11:114:4541:11:442:-2.5039,0,-370.981 dDocent_Contig_3044 1 . N G 252.978 . AB=0;ABP=0;AC=2;AF=1;AN=2;AO=7;CIGAR=1X;DP=7;DPB=7;DPRA=0;EPP=18.2106;EPPR=0;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=0;NS=1;NUMALT=1;ODDS=9.4572;PAIRED=1;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=277;QR=0;RO=0;RPL=0;RPP=18.2106;RPPR=0;RPR=7;RUN=1;SAF=7;SAP=18.2106;SAR=0;SRF=0;SRP=0;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL ./.:.:.:.:.:.:.:. ./.:.:.:.:.:.:.:. 1/1:7:0,7:0:0:7:277:-25.2978,-2.10721,0 dDocent_Contig_3045 132 . G A 295.743 . AB=0.485714;ABP=3.07234;AC=1;AF=0.166667;AN=6;AO=17;CIGAR=1X;DP=90;DPB=90;DPRA=1.27273;EPP=39.9253;EPPR=161.528;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=463;QR=2631;RO=73;RPL=0;RPP=39.9253;RPPR=161.528;RPR=17;RUN=1;SAF=0;SAP=39.9253;SAR=17;SRF=0;SRP=161.528;SRR=73;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:33:33,0:33:1210:0:0:0,-9.93399,-109.206 0/1:35:18,17:18:652:17:463:-31.3982,0,-48.4733 0/0:22:22,0:22:769:0:0:0,-6.62266,-69.5223 dDocent_Contig_3046 34 . G T 49.4063 . AB=0.2;ABP=14.7363;AC=1;AF=0.166667;AN=6;AO=3;CIGAR=1X;DP=43;DPB=43;DPRA=1.07143;EPP=9.52472;EPPR=89.8692;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=121;QR=1575;RO=40;RPL=0;RPP=9.52472;RPPR=89.8692;RPR=3;RUN=1;SAF=3;SAP=9.52472;SAR=0;SRF=40;SRP=89.8692;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:17:17,0:17:667:0:0:0,-5.11751,-60.3553 0/1:15:12,3:12:462:3:121:-6.76454,0,-37.4057 0/0:11:11,0:11:446:0:0:0,-3.31133,-40.4958 dDocent_Contig_3047 8 . C A 2505.69 . AB=0.39749;ABP=24.825;AC=3;AF=0.5;AN=6;AO=95;CIGAR=1X;DP=239;DPB=239;DPRA=0;EPP=209.3;EPPR=315.702;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=1.38778e-17;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=3635;QR=5536;RO=144;RPL=0;RPP=209.3;RPPR=315.702;RPR=95;RUN=1;SAF=95;SAP=209.3;SAR=0;SRF=144;SRP=315.702;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:144:86,58:86:3333:58:2201:-154.965,0,-256.754 0/1:30:18,12:18:684:12:464:-33.0807,0,-52.8613 0/1:65:40,25:40:1519:25:970:-68.0465,0,-117.417 dDocent_Contig_3048 42 . C A 54.7191 . AB=0.173913;ABP=24.253;AC=1;AF=0.166667;AN=6;AO=5;CIGAR=1X;DP=85;DPB=85;DPRA=0.75;EPP=13.8677;EPPR=176.728;GTI=0;LEN=1;MEANALT=1;MQM=54.8;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=0;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=196;QR=3143;RO=80;RPL=0;RPP=13.8677;RPPR=176.728;RPR=5;RUN=1;SAF=5;SAP=13.8677;SAR=0;SRF=80;SRP=176.728;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:34:34,0:34:1350:0:0:0,-10.235,-121.756 0/1:23:19,4:19:766:4:158:-7.29582,0,-62.3364 0/0:28:27,1:27:1027:1:38:0,-4.63157,-88.9079 dDocent_Contig_3049 91 . A G 223.483 . AB=0.162393;ABP=118.841;AC=1;AF=0.166667;AN=6;AO=24;CIGAR=1X;DP=215;DPB=215;DPRA=0;EPP=55.1256;EPPR=417.762;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=827;QR=6582;RO=191;RPL=24;RPP=55.1256;RPPR=417.762;RPR=0;RUN=1;SAF=24;SAP=55.1256;SAR=0;SRF=191;SRP=417.762;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:117:98,19:98:3386:19:653:-23.8712,0,-269.74 0/0:41:39,2:39:1351:2:70:0,-5.69483,-115.239 0/0:57:54,3:54:1845:3:104:0,-7.45562,-156.624 dDocent_Contig_3050 28 . G C 15102.4 . AB=0.747336;ABP=352.115;AC=3;AF=0.5;AN=6;AO=491;CIGAR=2X1M1X2M1X1M1X3M3X;DP=657;DPB=657;DPRA=0;EPP=1069.2;EPPR=328.731;GTI=0;LEN=1;MEANALT=6;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=19003;QR=5849;RO=150;RPL=0;RPP=1069.2;RPPR=328.731;RPR=491;RUN=1;SAF=491;SAP=1069.2;SAR=0;SRF=150;SRP=328.731;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|1:356:82,265:82:3215:265:10265:-818.556,0,-184.62 0|1:72:13,58:13:509:58:2248:-180.752,0,-24.3852 0|1:229:55,168:55:2125:168:6490:-516.454,0,-123.966 dDocent_Contig_3051 8 . C A 215.835 . AB=0.154545;ABP=117.032;AC=2;AF=0.333333;AN=6;AO=26;CIGAR=1X;DP=227;DPB=227;DPRA=0;EPP=59.4686;EPPR=439.476;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=0.975124;PAO=0;PQA=0;PQR=0;PRO=0;QA=980;QR=7761;RO=201;RPL=0;RPP=59.4686;RPPR=439.476;RPR=26;RUN=1;SAF=26;SAP=59.4686;SAR=0;SRF=201;SRP=439.476;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:117:108,9:108:4188:9:341:0,-4.17432,-345.937 0/1:39:30,9:30:1137:9:342:-19.3966,0,-90.8901 0/1:71:63,8:63:2436:8:297:-5.70974,0,-198.069 dDocent_Contig_3052 146 . T G 2908.26 . AB=0.646465;ABP=21.4568;AC=4;AF=0.666667;AN=6;AO=93;CIGAR=1X;DP=130;DPB=130;DPRA=0;EPP=204.957;EPPR=83.3548;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=3679;QR=1451;RO=37;RPL=0;RPP=204.957;RPPR=83.3548;RPR=93;RUN=1;SAF=0;SAP=204.957;SAR=93;SRF=0;SRP=83.3548;SRR=37;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:80:28,52:28:1098:52:2052:-160.788,0,-75.0224 0/1:19:7,12:7:271:12:471:-37.0189,0,-19.0322 1/1:31:2,29:2:82:29:1156:-96.5423,-1.55225,0 dDocent_Contig_3053 33 . C T 44.9322 . AB=0.173913;ABP=24.253;AC=2;AF=0.333333;AN=6;AO=4;CIGAR=1X;DP=40;DPB=40;DPRA=0.676471;EPP=11.6962;EPPR=81.1833;GTI=0;LEN=1;MEANALT=1;MQM=48;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=0;PAIREDR=0.861111;PAO=0;PQA=0;PQR=0;PRO=0;QA=154;QR=1420;RO=36;RPL=0;RPP=11.6962;RPPR=81.1833;RPR=4;RUN=1;SAF=4;SAP=11.6962;SAR=0;SRF=36;SRP=81.1833;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:15:12,3:12:466:3:116:-5.982,0,-37.7668 0/1:8:7,1:7:276:1:38:-1.38903,0,-22.7968 0/0:17:17,0:17:678:0:0:0,-5.11751,-61.3517 dDocent_Contig_3054 27 . C T 517.789 . AB=0.157635;ABP=209.685;AC=2;AF=0.333333;AN=6;AO=37;CIGAR=1X;DP=274;DPB=274;DPRA=0;EPP=83.3548;EPPR=517.649;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=1490;QR=9494;RO=237;RPL=0;RPP=83.3548;RPPR=517.649;RPR=37;RUN=1;SAF=37;SAP=83.3548;SAR=0;SRF=237;SRP=517.649;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:171:146,25:146:5881:25:1002:-39.0007,0,-477.588 0/1:32:25,7:25:1000:7:284:-16.301,0,-80.6641 0/0:71:66,5:66:2613:5:204:0,-2.6291,-216.549 dDocent_Contig_3055 43 . T G 192.421 . AB=0;ABP=0;AC=2;AF=1;AN=2;AO=6;CIGAR=1X;DP=6;DPB=6;DPRA=0;EPP=16.0391;EPPR=0;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=0;NS=1;NUMALT=1;ODDS=8.76405;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=210;QR=0;RO=0;RPL=0;RPP=16.0391;RPPR=0;RPR=6;RUN=1;SAF=0;SAP=16.0391;SAR=6;SRF=0;SRP=0;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL ./.:.:.:.:.:.:.:. 1/1:6:0,6:0:0:6:210:-19.242,-1.80618,0 ./.:.:.:.:.:.:.:. dDocent_Contig_3056 8 . T C 8098.29 . AB=0;ABP=0;AC=6;AF=1;AN=6;AO=250;CIGAR=1X;DP=264;DPB=264;DPRA=0;EPP=545.878;EPPR=33.4109;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=9540;QR=544;RO=14;RPL=0;RPP=545.878;RPPR=33.4109;RPR=250;RUN=1;SAF=250;SAP=545.878;SAR=0;SRF=14;SRP=33.4109;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 1/1:167:7,160:7:273:160:6116:-525.436,-25.334,0 1/1:9:0,9:0:0:9:348:-31.6804,-2.70927,0 1/1:88:7,81:7:271:81:3076:-252.236,-1.7342,0 dDocent_Contig_3057 15 . G C 166.315 . AB=0.363636;ABP=4.78696;AC=1;AF=0.166667;AN=6;AO=4;CIGAR=1M2I1M1X2M3X;DP=39;DPB=40;DPRA=0.6875;EPP=11.6962;EPPR=65.983;GTI=0;LEN=1;MEANALT=1;MQM=9;MQMR=60;NS=3;NUMALT=2;ODDS=0;PAIRED=0;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=159;QR=1119;RO=29;RPL=0;RPP=11.6962;RPPR=65.983;RPR=4;RUN=1;SAF=4;SAP=11.6962;SAR=0;SRF=29;SRP=65.983;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|0:16:16,0,0:16:624:0,0:0,0:0,-4.81648,-56.4963,-4.81648,-56.4963,-56.4963 0|1:11:7,4,0:7:266:4,0:159,0:-0.0174826,0,-20.9863,-2.12469,-22.1905,-24.1198 0|0:12:6,0,6:6:229:0,6:0,241:-18.4539,-20.2601,-39.0376,0,-19.1687,-17.3626 dDocent_Contig_3058 96 . G T 61.7453 . AB=0;ABP=0;AC=2;AF=1;AN=2;AO=2;CIGAR=1M1I5M1X1M1X;DP=2;DPB=2.22222;DPRA=0;EPP=7.35324;EPPR=0;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=0;NS=1;NUMALT=1;ODDS=5.99146;PAIRED=1;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=65;QR=0;RO=0;RPL=2;RPP=7.35324;RPPR=0;RPR=0;RUN=1;SAF=2;SAP=7.35324;SAR=0;SRF=0;SRP=0;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 1|1:2:0,2:0:0:2:65:-6.17345,-0.60206,0 .:.:.:.:.:.:.:. .:.:.:.:.:.:.:. dDocent_Contig_3059 119 . G A 96.7426 . AB=0.172414;ABP=57.0725;AC=3;AF=0.5;AN=6;AO=10;CIGAR=1X;DP=58;DPB=58;DPRA=0;EPP=24.725;EPPR=107.241;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=339;QR=1430;RO=48;RPL=0;RPP=24.725;RPPR=107.241;RPR=10;RUN=1;SAF=0;SAP=24.725;SAR=10;SRF=0;SRP=107.241;SRR=48;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:29:26,3:26:771:3:103:-0.880151,0,-60.9438 0/1:10:8,2:8:234:2:69:-3.54236,0,-18.3371 0/1:19:14,5:14:425:5:167:-9.6399,0,-32.8271 dDocent_Contig_3061 15 . C A 69.3163 . AB=0.3;ABP=6.48466;AC=1;AF=0.166667;AN=6;AO=3;CIGAR=1X;DP=28;DPB=28;DPRA=1.11111;EPP=9.52472;EPPR=57.2971;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=123;QR=995;RO=25;RPL=0;RPP=9.52472;RPPR=57.2971;RPR=3;RUN=1;SAF=3;SAP=9.52472;SAR=0;SRF=25;SRP=57.2971;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:10:7,3:7:284:3:123:-8.45449,0,-22.9235 0/0:6:6,0:6:232:0:0:0,-1.80618,-21.2438 0/0:12:12,0:12:479:0:0:0,-3.61236,-43.4596 dDocent_Contig_3062 85 . G A 579.751 . AB=0.209677;ABP=139.183;AC=2;AF=0.333333;AN=6;AO=43;CIGAR=1M1X7M;DP=255;DPB=258.667;DPRA=0;EPP=96.3836;EPPR=435.133;GTI=0;LEN=1;MEANALT=2.66667;MQM=60;MQMR=60;NS=3;NUMALT=2;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=1419;QR=6444;RO=199;RPL=43;RPP=96.3836;RPPR=435.133;RPR=0;RUN=1;SAF=43;SAP=96.3836;SAR=0;SRF=199;SRP=435.133;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|1:103:72,2,27:72:2324:2,27:60,910:-52.207,-69.0853,-255.916,0,-182.768,-179.436 0|1:83:68,3,12:68:2211:3,12:95,371:-9.29098,-22.1145,-199.693,0,-170.832,-174.864 0|0:69:59,6,4:59:1909:6,4:190,138:0,-2.48765,-154.665,-6.53806,-145.259,-159.344 dDocent_Contig_3063 113 . T A 31.7784 . AB=0.142857;ABP=34.0313;AC=1;AF=0.166667;AN=6;AO=4;CIGAR=1X;DP=52;DPB=52;DPRA=2.33333;EPP=11.6962;EPPR=107.241;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=142;QR=1570;RO=48;RPL=0;RPP=11.6962;RPPR=107.241;RPR=4;RUN=1;SAF=0;SAP=11.6962;SAR=4;SRF=0;SRP=107.241;SRR=48;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:28:24,4:24:762:4:142:-4.70043,0,-60.4452 0/0:13:13,0:13:436:0:0:0,-3.91339,-39.5601 0/0:11:11,0:11:372:0:0:0,-3.31133,-33.8043 dDocent_Contig_3064 51 . G A 1609.94 . AB=0.298165;ABP=80.1474;AC=3;AF=0.5;AN=6;AO=65;CIGAR=1X;DP=218;DPB=218;DPRA=0;EPP=144.156;EPPR=335.246;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=1.38778e-17;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=2569;QR=6068;RO=153;RPL=65;RPP=144.156;RPPR=335.246;RPR=0;RUN=1;SAF=65;SAP=144.156;SAR=0;SRF=153;SRP=335.246;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:99:70,29:70:2806:29:1144:-73.4422,0,-222.845 0/1:55:42,13:42:1620:13:519:-30.4996,0,-129.481 0/1:64:41,23:41:1642:23:906:-62.5751,0,-128.739 dDocent_Contig_3065 14 . T G 10670.8 . AB=0.209259;ABP=399.489;AC=2;AF=0.333333;AN=6;AO=113;CIGAR=1X3M1X2M1X;DP=540;DPB=540;DPRA=0;EPP=248.387;EPPR=118.098;GTI=0;LEN=1;MEANALT=5;MQM=60;MQMR=60;NS=3;NUMALT=3;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=4419;QR=2087;RO=53;RPL=0;RPP=248.387;RPPR=118.098;RPR=113;RUN=1;SAF=113;SAP=248.387;SAR=0;SRF=53;SRP=118.098;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|0:231:25,41,47,117:25:992:41,47,117:1619,1832,4653:-444.444,-318.748,-388.067,-301.402,-249.842,-368.915,-68.9044,-17.344,0,-115.346 1|0:206:17,46,35,102:17:669:46,35,102:1793,1348,4019:-417.837,-275.585,-316.772,-312.284,-219.948,-356.782,-92.3379,0,-36.7014,-116.668 1|0:103:11,26,16,50:11:426:26,16,50:1007,630,2013:-210.325,-130.92,-158.084,-161.812,-114.087,-191.987,-47.7258,0,-30.8912,-67.6667 dDocent_Contig_3066 74 . G A 2380.48 . AB=0.45;ABP=7.78754;AC=3;AF=0.5;AN=6;AO=99;CIGAR=1X2M;DP=220;DPB=220;DPRA=0;EPP=217.986;EPPR=254.901;GTI=0;LEN=1;MEANALT=2;MQM=60;MQMR=60;NS=3;NUMALT=2;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=3423;QR=3819;RO=116;RPL=99;RPP=217.986;RPPR=254.901;RPR=0;RUN=1;SAF=99;SAP=217.986;SAR=0;SRF=116;SRP=254.901;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|1:94:43,0,51:43:1407:0,51:0,1775:-131.734,-144.679,-258.315,0,-113.973,-98.6201 0|1:56:30,3,22:30:1018:3,22:101,770:-53.6259,-54.4746,-136.123,0,-74.3732,-75.934 0|1:70:43,1,26:43:1394:1,26:35,878:-58.2106,-68.3067,-180.476,0,-109.606,-104.627 dDocent_Contig_3067 7 . C A 2716.19 . AB=0.771186;ABP=78.3862;AC=3;AF=0.5;AN=6;AO=91;CIGAR=1X;DP=118;DPB=118;DPRA=0;EPP=200.614;EPPR=61.6401;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=0.978022;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=3464;QR=1032;RO=27;RPL=0;RPP=200.614;RPPR=61.6401;RPR=91;RUN=1;SAF=91;SAP=200.614;SAR=0;SRF=27;SRP=61.6401;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:75:11,64:11:413:64:2424:-195.793,0,-14.9369 0/1:20:10,10:10:386:10:385:-28.9857,0,-29.076 0/1:23:6,17:6:233:17:655:-52.3629,0,-14.4164 dDocent_Contig_3069 34 . C G 97.423 . AB=0.189189;ABP=34.0565;AC=2;AF=0.333333;AN=6;AO=7;CIGAR=1X;DP=77;DPB=77;DPRA=0.4625;EPP=18.2106;EPPR=155.013;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=264;QR=2785;RO=70;RPL=0;RPP=18.2106;RPPR=155.013;RPR=7;RUN=1;SAF=7;SAP=18.2106;SAR=0;SRF=70;SRP=155.013;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:40:40,0:40:1599:0:0:0,-12.0412,-144.141 0/1:18:16,2:16:625:2:77:-1.8906,0,-51.1639 0/1:19:14,5:14:561:5:187:-11.4661,0,-45.1113 dDocent_Contig_3071 24 . A C 73.609 . AB=0.133333;ABP=73.0765;AC=2;AF=0.333333;AN=6;AO=8;CIGAR=2X;DP=89;DPB=89;DPRA=1.03448;EPP=20.3821;EPPR=178.9;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=3.46945e-18;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=312;QR=3170;RO=81;RPL=0;RPP=20.3821;RPPR=178.9;RPR=8;RUN=1;SAF=8;SAP=20.3821;SAR=0;SRF=81;SRP=178.9;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|0:29:29,0:29:1149:0:0:0,-8.72987,-103.698 0|1:30:25,5:25:986:5:193:-8.70989,0,-80.0125 0|1:30:27,3:27:1035:3:119:-2.06411,0,-84.4091 dDocent_Contig_3072 8 . C T 251.178 . AB=0.116364;ABP=354.56;AC=3;AF=0.5;AN=6;AO=32;CIGAR=3M1X5M;DP=275;DPB=274.778;DPRA=0;EPP=72.4974;EPPR=517.649;GTI=0;LEN=1;MEANALT=1.66667;MQM=60;MQMR=60;NS=3;NUMALT=2;ODDS=0;PAIRED=1;PAIREDR=0.987342;PAO=0;PQA=0;PQR=0;PRO=0;QA=1237;QR=9109;RO=237;RPL=0;RPP=72.4974;RPPR=517.649;RPR=32;RUN=1;SAF=32;SAP=72.4974;SAR=0;SRF=237;SRP=517.649;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|1:163:146,0,17:146:5606:0,17:0,662:-10.8493,-54.7996,-514.974,0,-460.563,-455.445 0|1:19:14,2,3:14:542:2,3:75,117:-5.41215,-3.48901,-47.4091,0,-38.393,-43.6319 0|1:93:77,0,12:77:2961:0,12:0,458:-14.3791,-37.5585,-280.651,0,-243.076,-239.464 dDocent_Contig_3074 15 . C A 2062.27 . AB=0.108614;ABP=358.262;AC=1;AF=0.166667;AN=6;AO=29;CIGAR=2X1M1X2M;DP=267;DPB=267;DPRA=0;EPP=65.983;EPPR=157.185;GTI=0;LEN=1;MEANALT=5.33333;MQM=59.7586;MQMR=60;NS=3;NUMALT=4;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=1129;QR=2770;RO=71;RPL=0;RPP=65.983;RPPR=157.185;RPR=29;RUN=1;SAF=29;SAP=65.983;SAR=0;SRF=71;SRP=157.185;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|1:149:40,31,38,10,29:40:1560:31,38,10,29:1188,1503,394,1152:-111.649,-26.3779,-145.271,0,-30.9132,-116.788,-91.2759,-122.188,-95.8118,-216.492,-28.8532,-59.7661,-33.3887,-124.665,-148.35 0|0:56:17,7,9,6,14:17:671:7,9,6,14:273,346,237,544:-39.581,-22.285,-75.3938,-16.2962,-49.0992,-68.8026,-25.2068,-58.01,-52.021,-78.6168,0,-32.804,-26.8153,-35.7258,-51.0025 0|0:62:14,7,8,13,20:14:539:7,8,13,20:279,320,498,787:-60.5189,-41.7565,-83.9017,-38.3716,-59.6469,-80.2158,-23.8693,-45.1435,-41.7586,-64.2069,0,-21.2742,-17.8891,-3.38719,-38.2312 dDocent_Contig_3075 25 . C T 7147.36 . AB=0.471545;ABP=6.47053;AC=3;AF=0.5;AN=6;AO=232;CIGAR=1M3I1M1X1M1X2M;DP=492;DPB=641.143;DPRA=0;EPP=506.792;EPPR=241.872;GTI=0;LEN=1;MEANALT=4.33333;MQM=60;MQMR=60;NS=3;NUMALT=4;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=9156;QR=4242;RO=110;RPL=0;RPP=506.792;RPPR=241.872;RPR=232;RUN=1;SAF=232;SAP=506.792;SAR=0;SRF=110;SRP=241.872;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|1:296:66,31,64,112,23:66:2539:31,64,112,23:1217,2461,4423,923:-344.086,-263.865,-462.964,-161.936,-270.277,-351.1,0,-108.341,-6.41261,-174.716,-287.903,-396.245,-294.315,-132.379,-489.41 0|1:68:9,2,5,47,2:9:354:2,5,47,2:72,192,1833,82:-147.959,-144.795,-173.313,-134.908,-158.155,-162.523,0,-23.2516,-13.3643,-14.9746,-143.899,-167.146,-157.26,-22.3527,-172.418 0|1:128:35,2,9,73,9:35:1349:2,9,73,9:74,351,2900,364:-228.214,-232.698,-342.857,-209.9,-314.608,-317.952,0,-104.707,-81.9075,-88.7839,-208.738,-313.447,-290.649,-80.7449,-316.791 dDocent_Contig_3076 35 . C T 67.1416 . AB=0.102564;ABP=217.04;AC=1;AF=0.166667;AN=6;AO=37;CIGAR=1X;DP=599;DPB=599;DPRA=0;EPP=83.3548;EPPR=1221.21;GTI=0;LEN=1;MEANALT=1.33333;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=0.998217;PAO=0;PQA=0;PQR=0;PRO=0;QA=1452;QR=22019;RO=561;RPL=0;RPP=83.3548;RPPR=1221.21;RPR=37;RUN=1;SAF=37;SAP=83.3548;SAR=0;SRF=561;SRP=1221.21;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:313:302,11:302:11877:11:439:0,-54.357,-1028.29 0/0:130:119,10:119:4609:10:400:0,-2.88248,-378.408 0/1:156:140,16:140:5533:16:613:-8.53807,0,-450.857 dDocent_Contig_3077 26 . C T 42.1048 . AB=0.109375;ABP=87.8334;AC=1;AF=0.166667;AN=6;AO=8;CIGAR=1X2M1X;DP=252;DPB=252;DPRA=3.7;EPP=20.3821;EPPR=526.335;GTI=0;LEN=1;MEANALT=2;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=318;QR=9317;RO=241;RPL=0;RPP=20.3821;RPPR=526.335;RPR=8;RUN=1;SAF=8;SAP=20.3821;SAR=0;SRF=241;SRP=526.335;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|0:158:154,1:154:5952:1:41:0,-42.9588,-531.514 0|0:30:30,0:30:1175:0:0:0,-9.0309,-106.039 0|1:64:57,7:57:2190:7:277:-6.03436,0,-178.032 dDocent_Contig_3078 29 . C T 1368.49 . AB=0.266355;ABP=104.481;AC=3;AF=0.5;AN=6;AO=57;CIGAR=1X;DP=214;DPB=214;DPRA=0;EPP=126.784;EPPR=343.931;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=1.38778e-17;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=2287;QR=6128;RO=157;RPL=0;RPP=126.784;RPPR=343.931;RPR=57;RUN=1;SAF=57;SAP=126.784;SAR=0;SRF=157;SRP=343.931;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:110:77,33:77:2974:33:1333:-87.1171,0,-234.641 0/1:51:43,8:43:1678:8:323:-14.0864,0,-135.897 0/1:53:37,16:37:1476:16:631:-41.1686,0,-117.134 dDocent_Contig_3079 24 . A G 887.39 . AB=0;ABP=0;AC=0;AF=0;AN=6;AO=7;CIGAR=2X8M;DP=483;DPB=479.8;DPRA=0;EPP=18.2106;EPPR=858.57;GTI=0;LEN=1;MEANALT=5;MQM=60;MQMR=60;NS=3;NUMALT=3;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=271;QR=15151;RO=394;RPL=0;RPP=18.2106;RPPR=858.57;RPR=7;RUN=1;SAF=7;SAP=18.2106;SAR=0;SRF=394;SRP=858.57;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|0:256:196,15,0,45:196:7568:15,0,45:577,0,1811:-90.2619,-101.902,-718.899,-149.264,-723.414,-770.78,0,-574.161,-621.527,-607.98 0|0:63:53,0,4,3:53:2016:0,4,3:0,159,120:0,-15.9546,-181.285,-2.86181,-168.193,-166.989,-6.06742,-171.4,-158.307,-170.496 0|0:164:145,4,3,8:145:5567:4,3,8:159,112,324:0,-30.5574,-486.299,-34.4822,-478.333,-490.52,-16.9226,-460.785,-464.705,-471.467 dDocent_Contig_3080 13 . A C 124.244 . AB=0.205882;ABP=28.557;AC=2;AF=0.333333;AN=6;AO=8;CIGAR=1X;DP=61;DPB=61;DPRA=0;EPP=20.3821;EPPR=118.098;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=3.46945e-18;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=321;QR=2116;RO=53;RPL=0;RPP=20.3821;RPPR=118.098;RPR=8;RUN=1;SAF=8;SAP=20.3821;SAR=0;SRF=53;SRP=118.098;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:27:21,6:21:829:6:240:-13.8476,0,-66.7957 0/1:7:6,1:6:242:1:40:-1.88847,0,-20.0497 0/0:27:26,1:26:1045:1:41:0,-4.03324,-90.2479 dDocent_Contig_3081 40 . A G 45.2338 . AB=0.176471;ABP=18.4661;AC=1;AF=0.166667;AN=6;AO=3;CIGAR=1X;DP=83;DPB=83;DPRA=0.515152;EPP=9.52472;EPPR=176.728;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=123;QR=3211;RO=80;RPL=0;RPP=9.52472;RPPR=176.728;RPR=3;RUN=1;SAF=3;SAP=9.52472;SAR=0;SRF=80;SRP=176.728;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:45:45,0:45:1823:0:0:0,-13.5463,-164.276 0/0:21:21,0:21:818:0:0:0,-6.32163,-73.9348 0/1:17:14,3:14:570:3:123:-6.34728,0,-46.5247 dDocent_Contig_3082 8 . A C 5767.08 . AB=0.865116;ABP=251.962;AC=3;AF=0.5;AN=6;AO=186;CIGAR=1X;DP=215;DPB=215;DPRA=0;EPP=406.904;EPPR=65.983;GTI=0;LEN=1;MEANALT=1;MQM=59.2849;MQMR=60;NS=3;NUMALT=1;ODDS=1.38778e-17;PAIRED=0;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=7187;QR=1128;RO=29;RPL=0;RPP=406.904;RPPR=65.983;RPR=186;RUN=1;SAF=186;SAP=406.904;SAR=0;SRF=29;SRP=65.983;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:138:18,120:18:699:120:4647:-376.385,0,-21.702 0/1:38:4,34:4:156:34:1300:-105.758,0,-2.97815 0/1:39:7,32:7:273:32:1240:-100.072,0,-13.1978 dDocent_Contig_3083 14 . C T 6371.27 . AB=0.0575916;ABP=327.719;AC=0;AF=0;AN=6;AO=11;CIGAR=1X2M1X2M;DP=309;DPB=308.333;DPRA=0;EPP=26.8965;EPPR=146.327;GTI=0;LEN=1;MEANALT=5;MQM=54;MQMR=60;NS=3;NUMALT=3;ODDS=0;PAIRED=0;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=443;QR=2612;RO=66;RPL=0;RPP=26.8965;RPPR=146.327;RPR=11;RUN=1;SAF=11;SAP=26.8965;SAR=0;SRF=66;SRP=146.327;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|0:107:27,7,5,66:27:1077:7,5,66:280,199,2601:-205.715,-190.858,-277.447,-197.573,-263.285,-284.764,0,-65.7114,-72.4266,-68.8279 0|0:84:13,4,2,61:13:513:4,2,61:163,80,2428:-195.406,-185.925,-226.93,-192.731,-221.546,-234.337,0,-28.8116,-35.6185,-23.8441 0|0:118:26,0,8,76:26:1022:0,8,76:0,313,3032:-241.53,-249.357,-333.416,-223.633,-307.692,-305.284,0,-84.0632,-58.3392,-61.1849 dDocent_Contig_3084 14 . C T 2198.21 . AB=0.037037;ABP=505.666;AC=0;AF=0;AN=6;AO=10;CIGAR=1X3M1X;DP=270;DPB=270;DPRA=0;EPP=24.725;EPPR=287.473;GTI=0;LEN=1;MEANALT=3.33333;MQM=60;MQMR=60;NS=3;NUMALT=3;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=403;QR=5244;RO=131;RPL=0;RPP=24.725;RPPR=287.473;RPR=10;RUN=1;SAF=10;SAP=24.725;SAR=0;SRF=131;SRP=287.473;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|0:181:101,4,30,45:101:4058:4,30,45:160,1192,1796:-117.506,-134.729,-467.924,-49.7803,-371,-375.149,0,-321.222,-236.275,-320.856 0|0:25:5,2,5,13:5:187:2,5,13:80,202,524:-43.0534,-37.9689,-52.6667,-27.9048,-36.6134,-41.6987,-1.36859,-10.071,0,-12.7494 0|0:64:25,4,13,22:25:999:4,13,22:163,527,878:-64.7789,-58.8567,-139.936,-28.8445,-97.6808,-107.215,0,-68.8331,-38.821,-75.6583 dDocent_Contig_3085 69 . T A 1231.99 . AB=0.766667;ABP=40.0701;AC=3;AF=0.5;AN=6;AO=46;CIGAR=1X1M1X;DP=60;DPB=60;DPRA=0;EPP=102.898;EPPR=33.4109;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=1611;QR=506;RO=14;RPL=46;RPP=102.898;RPPR=33.4109;RPR=0;RUN=1;SAF=46;SAP=102.898;SAR=0;SRF=14;SRP=33.4109;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|1:28:7,21:7:256:21:749:-59.3059,0,-14.9641 0|1:19:2,17:2:73:17:582:-46.9786,0,-1.21153 0|1:13:5,8:5:177:8:280:-21.6264,0,-12.3635 dDocent_Contig_3087 1 . N G 113.73 . AB=0;ABP=0;AC=2;AF=1;AN=2;AO=3;CIGAR=1X;DP=3;DPB=3;DPRA=0;EPP=9.52472;EPPR=0;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=0;NS=1;NUMALT=1;ODDS=6.68461;PAIRED=1;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=122;QR=0;RO=0;RPL=0;RPP=9.52472;RPPR=0;RPR=3;RUN=1;SAF=3;SAP=9.52472;SAR=0;SRF=0;SRP=0;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL ./.:.:.:.:.:.:.:. ./.:.:.:.:.:.:.:. 1/1:3:0,3:0:0:3:122:-11.3725,-0.90309,0 dDocent_Contig_3091 130 . G A 3008.98 . AB=0.754717;ABP=62.7463;AC=4;AF=0.666667;AN=6;AO=105;CIGAR=1X;DP=131;DPB=131;DPRA=0;EPP=231.015;EPPR=59.4686;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=6.93889e-18;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=3727;QR=859;RO=26;RPL=0;RPP=231.015;RPPR=59.4686;RPR=105;RUN=1;SAF=0;SAP=231.015;SAR=105;SRF=0;SRP=59.4686;SRR=26;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:73:19,54:19:623:54:1937:-152.628,0,-34.4029 1/1:25:0,25:0:0:25:868:-78.4298,-7.52575,0 0/1:33:7,26:7:236:26:922:-73.3625,0,-11.6355 dDocent_Contig_3092 26 . A G 4903.76 . AB=0.834951;ABP=103.383;AC=4;AF=0.666667;AN=6;AO=153;CIGAR=1X;DP=174;DPB=174;DPRA=0;EPP=335.246;EPPR=48.6112;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=5991;QR=844;RO=21;RPL=0;RPP=335.246;RPPR=48.6112;RPR=153;RUN=1;SAF=153;SAP=335.246;SAR=0;SRF=21;SRP=48.6112;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 1/1:71:4,67:4:161:67:2605:-219.713,-6.49823,0 0/1:64:11,53:11:444:53:2074:-167.582,0,-21.0497 0/1:39:6,33:6:239:33:1312:-106.603,0,-10.1443 dDocent_Contig_3093 107 . N G 46.2987 . AB=0;ABP=0;AC=2;AF=1;AN=2;AO=2;CIGAR=1X;DP=2;DPB=2;DPRA=0;EPP=7.35324;EPPR=0;GTI=0;LEN=1;MEANALT=1;MQM=27.5;MQMR=0;NS=1;NUMALT=1;ODDS=5.99146;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=67;QR=0;RO=0;RPL=0;RPP=7.35324;RPPR=0;RPR=2;RUN=1;SAF=0;SAP=7.35324;SAR=2;SRF=0;SRP=0;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL ./.:.:.:.:.:.:.:. 1/1:2:0,2:0:0:2:67:-4.62877,-0.60206,0 ./.:.:.:.:.:.:.:. dDocent_Contig_3094 98 . N G 1235.7 . AB=0.807692;ABP=45.7716;AC=6;AF=1;AN=6;AO=42;CIGAR=2X;DP=52;DPB=94.5;DPRA=0;EPP=94.2121;EPPR=0;GTI=0;LEN=1;MEANALT=2;MQM=43.2143;MQMR=0;NS=3;NUMALT=2;ODDS=0;PAIRED=1;PAIREDR=0;PAO=42.5;PQA=1466.5;PQR=0;PRO=0;QA=1468;QR=0;RO=0;RPL=42;RPP=94.2121;RPPR=0;RPR=0;RUN=1;SAF=42;SAP=94.2121;SAR=0;SRF=0;SRP=0;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 1|1:30:0,6,24:0:0:6,24:190,829:-75.1803,-59.9187,-58.1125,-12.9482,0,-5.72353 1|1:9:0,2,7:0:0:2,7:62,257:-23.6047,-18.6577,-18.0556,-4.90353,0,-2.79632 1|1:13:0,2,11:0:0:2,11:62,382:-29.6631,-24.699,-24.0969,-4.72313,0,-1.4118 dDocent_Contig_3095 183 . G T 103.294 . AB=0.156863;ABP=55.1682;AC=2;AF=0.333333;AN=6;AO=8;CIGAR=1X;DP=71;DPB=71;DPRA=1.275;EPP=20.3821;EPPR=139.813;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=3.46945e-18;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=316;QR=2431;RO=63;RPL=8;RPP=20.3821;RPPR=139.813;RPR=0;RUN=1;SAF=0;SAP=20.3821;SAR=8;SRF=0;SRP=139.813;SRR=63;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:41:35,6:35:1356:6:236:-9.27042,0,-109.969 0/0:20:20,0:20:762:0:0:0,-6.0206,-68.9037 0/1:10:8,2:8:313:2:80:-4.58149,0,-25.5232 dDocent_Contig_3096 8 . A G 54.8586 . AB=0.173913;ABP=24.253;AC=1;AF=0.166667;AN=6;AO=5;CIGAR=1X;DP=74;DPB=74;DPRA=1.55556;EPP=13.8677;EPPR=148.499;GTI=0;LEN=1;MEANALT=1.5;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=193;QR=2526;RO=67;RPL=0;RPP=13.8677;RPPR=148.499;RPR=5;RUN=1;SAF=5;SAP=13.8677;SAR=0;SRF=67;SRP=148.499;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:33:31,1:31:1171:1:39:0,-5.97121,-101.936 0/1:23:19,4:19:708:4:154:-7.30977,0,-57.1241 0/0:18:17,0:17:647:0:0:0,-5.11751,-58.4696 dDocent_Contig_3097 16 . C T 79.1908 . AB=0.0938776;ABP=354;AC=1;AF=0.166667;AN=6;AO=39;CIGAR=1X;DP=480;DPB=480;DPRA=0;EPP=87.6977;EPPR=960.63;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=2.77556e-17;PAIRED=1;PAIREDR=0.986395;PAO=0;PQA=0;PQR=0;PRO=0;QA=1562;QR=17732;RO=441;RPL=0;RPP=87.6977;RPPR=960.63;RPR=39;RUN=1;SAF=39;SAP=87.6977;SAR=0;SRF=441;SRP=960.63;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:245:222,23:222:8913:23:921:-9.44185,0,-727.865 0/0:75:72,3:72:2892:3:122:0,-11.2048,-249.004 0/0:160:147,13:147:5927:13:519:0,-1.10947,-486.131 dDocent_Contig_3098 209 . G A 45.6379 . AB=0.5;ABP=3.0103;AC=1;AF=0.166667;AN=6;AO=2;CIGAR=1X2M1X;DP=21;DPB=21;DPRA=0.470588;EPP=7.35324;EPPR=44.2683;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=80;QR=730;RO=19;RPL=2;RPP=7.35324;RPPR=44.2683;RPR=0;RUN=1;SAF=0;SAP=7.35324;SAR=2;SRF=0;SRP=44.2683;SRR=19;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|0:7:7,0:7:274:0:0:0,-2.10721,-25.0275 0|0:10:10,0:10:376:0:0:0,-3.0103,-34.1853 0|1:4:2,2:2:80:2:80:-6.38767,0,-6.38767 dDocent_Contig_3099 17 . C T 272.577 . AB=0.104308;ABP=602.755;AC=3;AF=0.5;AN=6;AO=46;CIGAR=1X;DP=441;DPB=441;DPRA=0;EPP=102.898;EPPR=860.742;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=1828;QR=15823;RO=395;RPL=0;RPP=102.898;RPPR=860.742;RPR=46;RUN=1;SAF=46;SAP=102.898;SAR=0;SRF=395;SRP=860.742;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:222:200,22:200:7998:22:867:-11.5094,0,-652.531 0/1:73:66,7:66:2626:7:278:-3.41517,0,-214.489 0/1:146:129,17:129:5199:17:683:-17.8505,0,-423.799 dDocent_Contig_3100 18 . A G 5682.14 . AB=0.654804;ABP=61.501;AC=3;AF=0.5;AN=6;AO=184;CIGAR=1X;DP=281;DPB=281;DPRA=0;EPP=402.561;EPPR=213.643;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=1.38778e-17;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=7310;QR=3926;RO=97;RPL=0;RPP=402.561;RPPR=213.643;RPR=184;RUN=1;SAF=184;SAP=402.561;SAR=0;SRF=97;SRP=213.643;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:140:52,88:52:2108:88:3481:-271.181,0,-147.748 0/1:37:9,28:9:366:28:1111:-89.1304,0,-22.167 0/1:104:36,68:36:1452:68:2718:-213.425,0,-99.6159 dDocent_Contig_3102 133 . G A 462.393 . AB=0.358491;ABP=12.2288;AC=3;AF=0.5;AN=6;AO=19;CIGAR=1X;DP=53;DPB=53;DPRA=0;EPP=44.2683;EPPR=74.6689;GTI=0;LEN=1;MEANALT=1.33333;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=734;QR=1324;RO=33;RPL=0;RPP=44.2683;RPPR=74.6689;RPR=19;RUN=1;SAF=0;SAP=44.2683;SAR=19;SRF=0;SRP=74.6689;SRR=33;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:27:13,14:13:525:14:531:-39.9863,0,-39.4676 0/1:9:8,1:8:322:1:41:-1.3853,0,-26.638 0/1:17:12,4:12:477:4:162:-9.74201,0,-38.0526 dDocent_Contig_3103 77 . A G 475.944 . AB=0.434783;ABP=4.70971;AC=1;AF=0.166667;AN=6;AO=22;CIGAR=1X;DP=78;DPB=78;DPRA=3.83333;EPP=50.7827;EPPR=124.613;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=764;QR=1827;RO=56;RPL=22;RPP=50.7827;RPPR=124.613;RPR=0;RUN=1;SAF=22;SAP=50.7827;SAR=0;SRF=56;SRP=124.613;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:46:26,20:26:870:20:696:-49.1168,0,-64.7622 0/0:9:9,0:9:306:0:0:0,-2.70927,-27.8705 0/0:23:21,2:21:651:2:68:0,-0.465814,-52.4245 dDocent_Contig_3104 12 . G A 323.757 . AB=0.217949;ABP=56.9074;AC=2;AF=0.333333;AN=6;AO=19;CIGAR=1X;DP=127;DPB=127;DPRA=0;EPP=44.2683;EPPR=237.529;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=733;QR=4294;RO=108;RPL=0;RPP=44.2683;RPPR=237.529;RPR=19;RUN=1;SAF=19;SAP=44.2683;SAR=0;SRF=108;SRP=237.529;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:49:47,2:47:1863:2:81:0,-7.06474,-160.192 0/1:45:36,9:36:1419:9:336:-17.0298,0,-114.42 0/1:33:25,8:25:1012:8:316:-18.8687,0,-81.4401 dDocent_Contig_3105 17 . C T 1470.37 . AB=0.20339;ABP=273.524;AC=3;AF=0.5;AN=6;AO=72;CIGAR=1X;DP=354;DPB=354;DPRA=0;EPP=159.356;EPPR=615.366;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=0.996454;PAO=0;PQA=0;PQR=0;PRO=0;QA=2869;QR=11111;RO=282;RPL=0;RPP=159.356;RPPR=615.366;RPR=72;RUN=1;SAF=72;SAP=159.356;SAR=0;SRF=282;SRP=615.366;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:170:145,25:145:5762:25:1000:-39.1235,0,-467.236 0/1:72:46,26:46:1772:26:1032:-71.5056,0,-138.026 0/1:112:91,21:91:3577:21:837:-41.9312,0,-288.259 dDocent_Contig_3106 29 . G T 68.2147 . AB=0.181818;ABP=22.3561;AC=1;AF=0.166667;AN=6;AO=4;CIGAR=1X;DP=36;DPB=36;DPRA=3.14286;EPP=11.6962;EPPR=72.4974;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=0;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=162;QR=1267;RO=32;RPL=0;RPP=11.6962;RPPR=72.4974;RPR=4;RUN=1;SAF=4;SAP=11.6962;SAR=0;SRF=32;SRP=72.4974;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:22:18,4:18:704:4:162:-8.3443,0,-57.0591 0/0:5:5,0:5:200:0:0:0,-1.50515,-18.3799 0/0:9:9,0:9:363:0:0:0,-2.70927,-33.0337 dDocent_Contig_3107 181 . T A 209.567 . AB=0.176471;ABP=64.8334;AC=2;AF=0.333333;AN=6;AO=12;CIGAR=1X;DP=100;DPB=100;DPRA=1.0625;EPP=29.068;EPPR=194.1;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=491;QR=3429;RO=88;RPL=12;RPP=29.068;RPPR=194.1;RPR=0;RUN=1;SAF=0;SAP=29.068;SAR=12;SRF=0;SRP=194.1;SRR=88;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:32:32,0:32:1246:0:0:0,-9.63296,-112.402 0/1:35:29,6:29:1134:6:245:-11.8934,0,-91.8133 0/1:33:27,6:27:1049:6:246:-12.5861,0,-84.7583 dDocent_Contig_3108 98 . N A 67.4314 . AB=0;ABP=0;AC=2;AF=1;AN=2;AO=2;CIGAR=3X;DP=2;DPB=2;DPRA=0;EPP=7.35324;EPPR=0;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=0;NS=1;NUMALT=1;ODDS=5.99146;PAIRED=1;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=71;QR=0;RO=0;RPL=2;RPP=7.35324;RPPR=0;RPR=0;RUN=1;SAF=2;SAP=7.35324;SAR=0;SRF=0;SRP=0;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 1|1:2:0,2:0:0:2:71:-6.74206,-0.60206,0 .:.:.:.:.:.:.:. .:.:.:.:.:.:.:. dDocent_Contig_3109 77 . T A 30.5878 . AB=0.222222;ABP=9.04217;AC=1;AF=0.166667;AN=6;AO=2;CIGAR=1X;DP=62;DPB=62;DPRA=0.339623;EPP=7.35324;EPPR=133.299;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=0;PAIREDR=0.95;PAO=0;PQA=0;PQR=0;PRO=0;QA=80;QR=2073;RO=60;RPL=2;RPP=7.35324;RPPR=133.299;RPR=0;RUN=1;SAF=0;SAP=7.35324;SAR=2;SRF=60;SRP=133.299;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:35:35,0:35:1203:0:0:0,-10.536,-108.574 0/1:9:7,2:7:242:2:80:-4.8823,0,-19.4084 0/0:18:18,0:18:628:0:0:0,-5.41854,-56.8471 dDocent_Contig_3110 32 . T A 4081.63 . AB=0.696809;ABP=66.2602;AC=3;AF=0.5;AN=6;AO=131;CIGAR=1X2M1X;DP=188;DPB=188;DPRA=0;EPP=287.473;EPPR=83.3548;GTI=0;LEN=1;MEANALT=1.33333;MQM=60;MQMR=60;NS=3;NUMALT=2;ODDS=0;PAIRED=1;PAIREDR=0.72973;PAO=0;PQA=0;PQR=0;PRO=0;QA=5155;QR=1476;RO=37;RPL=0;RPP=287.473;RPPR=83.3548;RPR=131;RUN=1;SAF=131;SAP=287.473;SAR=0;SRF=37;SRP=83.3548;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|1:117:24,20,73:24:956:20,73:767,2876:-229.375,-173.662,-246.361,0,-15.794,-56.7519 0|1:23:3,0,20:3:120:0,20:0,788:-64.3165,-65.2196,-75.1056,0,-10.2848,-4.26421 0|1:48:10,0,38:10:400:0,38:0,1491:-119.994,-123.004,-155.955,0,-33.3485,-21.9093 dDocent_Contig_3111 10 . T A 237.816 . AB=0.162791;ABP=87.9502;AC=1;AF=0.166667;AN=6;AO=16;CIGAR=1X;DP=164;DPB=164;DPRA=0;EPP=37.7539;EPPR=324.388;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=644;QR=5928;RO=148;RPL=0;RPP=37.7539;RPPR=324.388;RPR=16;RUN=1;SAF=16;SAP=37.7539;SAR=0;SRF=148;SRP=324.388;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:86:72,14:72:2873:14:565:-25.3045,0,-232.777 0/0:28:27,1:27:1075:1:41:0,-4.33427,-92.9457 0/0:50:49,1:49:1980:1:38:0,-11.2542,-174.589 dDocent_Contig_3112 14 . A G 1146.94 . AB=0.132653;ABP=117.877;AC=3;AF=0.5;AN=6;AO=13;CIGAR=1X4M;DP=98;DPB=98;DPRA=0;EPP=31.2394;EPPR=96.3836;GTI=0;LEN=1;MEANALT=2;MQM=60;MQMR=60;NS=3;NUMALT=2;ODDS=0;PAIRED=0.230769;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=495;QR=1661;RO=43;RPL=0;RPP=31.2394;RPPR=96.3836;RPR=13;RUN=1;SAF=13;SAP=31.2394;SAR=0;SRF=43;SRP=96.3836;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|1:65:32,25,8:32:1240:25,8:965,305:-69.6209,0,-94.3451,-54.2346,-76.8517,-153.693 0|1:17:4,9,4:4:156:9,4:345,150:-27.1176,0,-10.1215,-16.0374,-0.551429,-27.6587 0|1:16:7,8,1:7:265:8,1:311,40:-23.4392,0,-19.295,-22.2501,-18.4055,-43.6662 dDocent_Contig_3113 24 . G A 60.6968 . AB=0.104762;ABP=145.48;AC=1;AF=0.166667;AN=6;AO=21;CIGAR=1X;DP=340;DPB=340;DPRA=0;EPP=48.6112;EPPR=695.71;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=0.857143;PAIREDR=0.99373;PAO=0;PQA=0;PQR=0;PRO=0;QA=830;QR=12648;RO=319;RPL=0;RPP=48.6112;RPPR=695.71;RPR=21;RUN=1;SAF=21;SAP=48.6112;SAR=0;SRF=319;SRP=695.71;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:125:122,3:122:4857:3:123:0,-26.164,-425.576 0/0:110:103,7:103:4061:7:272:0,-8.26964,-340.652 0/1:105:94,11:94:3730:11:435:-7.89358,0,-304.107 dDocent_Contig_3114 27 . G A 1439.93 . AB=0.355263;ABP=30.668;AC=3;AF=0.5;AN=6;AO=54;CIGAR=1X;DP=152;DPB=152;DPRA=0;EPP=120.27;EPPR=215.815;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=6.93889e-18;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=2159;QR=3881;RO=98;RPL=0;RPP=120.27;RPPR=215.815;RPR=54;RUN=1;SAF=54;SAP=120.27;SAR=0;SRF=98;SRP=215.815;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:110:67,43:67:2668:43:1720:-121.903,0,-207.125 0/1:14:11,3:11:416:3:116:-6.60312,0,-33.5642 0/1:28:20,8:20:797:8:323:-21.0099,0,-63.6175 dDocent_Contig_3115 3 . A G 553.453 . AB=0.846154;ABP=16.5402;AC=6;AF=1;AN=6;AO=18;CIGAR=1X4I1M1X2M1X4M;DP=20;DPB=28;DPRA=0;EPP=42.0968;EPPR=0;GTI=0;LEN=1;MEANALT=1.33333;MQM=58.0556;MQMR=0;NS=3;NUMALT=2;ODDS=0;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=596;QR=0;RO=0;RPL=0;RPP=42.0968;RPPR=0;RPR=18;RUN=1;SAF=18;SAP=42.0968;SAR=0;SRF=0;SRP=0;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 1|1:6:0,0,6:0:0:0,6:0,180:-16.2206,-16.2206,-16.2206,-1.80618,-1.80618,0 1|1:1:0,0,1:0:0:0,1:0,36:-3.59827,-3.59827,-3.59827,-0.30103,-0.30103,0 1|1:13:0,2,11:0:0:2,11:71,380:-37.007,-31.2204,-30.6183,-6.14,0,-2.82867 dDocent_Contig_3116 11 . A G 1391.16 . AB=0.346405;ABP=34.3618;AC=3;AF=0.5;AN=6;AO=53;CIGAR=1X;DP=153;DPB=153;DPRA=0;EPP=118.098;EPPR=220.158;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=6.93889e-18;PAIRED=0.981132;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=2108;QR=3979;RO=100;RPL=0;RPP=118.098;RPPR=220.158;RPR=53;RUN=1;SAF=53;SAP=118.098;SAR=0;SRF=100;SRP=220.158;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:57:33,24:33:1316:24:962:-69.7206,0,-101.541 0/1:33:18,15:18:722:15:588:-43.3216,0,-55.3719 0/1:63:49,14:49:1941:14:558:-31.5963,0,-155.931 dDocent_Contig_3117 75 . A G 88.7644 . AB=0.208333;ABP=20.744;AC=1;AF=0.166667;AN=6;AO=11;CIGAR=1X3M;DP=160;DPB=160;DPRA=0;EPP=26.8965;EPPR=302.673;GTI=0;LEN=1;MEANALT=2.33333;MQM=60;MQMR=60;NS=3;NUMALT=2;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=422;QR=5313;RO=138;RPL=11;RPP=26.8965;RPPR=302.673;RPR=0;RUN=1;SAF=11;SAP=26.8965;SAR=0;SRF=138;SRP=302.673;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|0:86:80,2,4:80:3105:2,4:78,161:0,-17.6748,-272.159,-10.805,-259.491,-264.699 0|1:24:15,4,5:15:570:4,5:153,186:-10.6998,-2.65601,-48.1985,0,-34.1835,-45.2335 0|0:50:43,4,2:43:1638:4,2:148,75:0,-0.787026,-134.034,-6.78398,-129.095,-140.6 dDocent_Contig_3118 27 . A G 4678.77 . AB=0.754098;ABP=105.639;AC=4;AF=0.666667;AN=6;AO=156;CIGAR=1X;DP=201;DPB=201;DPRA=0;EPP=341.76;EPPR=100.727;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=1.38778e-17;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=5842;QR=1689;RO=45;RPL=0;RPP=341.76;RPPR=100.727;RPR=156;RUN=1;SAF=156;SAP=341.76;SAR=0;SRF=45;SRP=100.727;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:107:31,76:31:1146:76:2891:-228.154,0,-71.2099 1/1:18:0,18:0:0:18:645:-58.3689,-5.41854,0 0/1:76:14,62:14:543:62:2306:-184.877,0,-26.3373 dDocent_Contig_3119 48 . G A 4475.84 . AB=0.850467;ABP=117.165;AC=4;AF=0.666667;AN=6;AO=134;CIGAR=1X;DP=150;DPB=150;DPRA=0;EPP=293.988;EPPR=37.7539;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=0.992537;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=5363;QR=642;RO=16;RPL=0;RPP=293.988;RPPR=37.7539;RPR=134;RUN=1;SAF=134;SAP=293.988;SAR=0;SRF=16;SRP=37.7539;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:78:11,67:11:438:67:2671:-217.035,0,-16.293 0/1:29:5,24:5:204:24:968:-78.6907,0,-10.0142 1/1:43:0,43:0:0:43:1724:-155.382,-12.9443,0 dDocent_Contig_3120 49 . T C 2759.96 . AB=0.747899;ABP=66.5304;AC=3;AF=0.5;AN=6;AO=89;CIGAR=1X;DP=119;DPB=119;DPRA=0;EPP=196.271;EPPR=68.1545;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=6.93889e-18;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=3517;QR=1156;RO=30;RPL=0;RPP=196.271;RPPR=68.1545;RPR=89;RUN=1;SAF=89;SAP=196.271;SAR=0;SRF=30;SRP=68.1545;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:34:12,22:12:473:22:871:-68.4575,0,-32.6833 0/1:49:6,43:6:233:43:1717:-139.997,0,-6.58768 0/1:36:12,24:12:450:24:929:-73.0647,0,-29.995 dDocent_Contig_3121 12 . G A 12684.8 . AB=0.422201;ABP=58.422;AC=3;AF=0.5;AN=6;AO=445;CIGAR=1X;DP=1054;DPB=1054;DPRA=0;EPP=969.316;EPPR=1316.75;GTI=0;LEN=1;MEANALT=1.66667;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=0.993258;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=17683;QR=24136;RO=605;RPL=0;RPP=969.316;RPPR=1316.75;RPR=445;RUN=1;SAF=445;SAP=969.316;SAR=0;SRF=605;SRP=1316.75;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:486:304,180:304:12132:180:7191:-500.756,0,-944.934 0/1:264:137,127:137:5457:127:5014:-371.697,0,-411.504 0/1:304:164,138:164:6547:138:5478:-401.549,0,-497.644 dDocent_Contig_3122 140 . C T 44.3691 . AB=0.166667;ABP=26.1727;AC=1;AF=0.166667;AN=6;AO=5;CIGAR=1X;DP=60;DPB=60;DPRA=0.863636;EPP=13.8677;EPPR=122.441;GTI=0;LEN=1;MEANALT=1;MQM=37.6;MQMR=58.5455;NS=3;NUMALT=1;ODDS=0;PAIRED=0;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=199;QR=2169;RO=55;RPL=0;RPP=13.8677;RPPR=122.441;RPR=5;RUN=1;SAF=0;SAP=13.8677;SAR=5;SRF=0;SRP=122.441;SRR=55;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:22:22,0:22:870:0:0:0,-6.62266,-77.3478 0/0:14:13,1:13:509:1:39:0,-1.09338,-43.0336 0/1:24:20,4:20:790:4:160:-6.26069,0,-64.194 dDocent_Contig_3123 107 . N T 47.5025 . AB=0;ABP=0;AC=2;AF=1;AN=2;AO=2;CIGAR=1X;DP=2;DPB=2;DPRA=0;EPP=7.35324;EPPR=0;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=0;NS=1;NUMALT=1;ODDS=5.99146;PAIRED=1;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=50;QR=0;RO=0;RPL=0;RPP=7.35324;RPPR=0;RPR=2;RUN=1;SAF=0;SAP=7.35324;SAR=2;SRF=0;SRP=0;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL ./.:.:.:.:.:.:.:. 1/1:2:0,2:0:0:2:50:-4.74916,-0.60206,0 ./.:.:.:.:.:.:.:. dDocent_Contig_3125 80 . T C 2971.88 . AB=0.641892;ABP=28.8919;AC=4;AF=0.666667;AN=6;AO=112;CIGAR=1X;DP=166;DPB=166;DPRA=0;EPP=246.215;EPPR=120.27;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=3864;QR=1840;RO=54;RPL=112;RPP=246.215;RPPR=120.27;RPR=0;RUN=1;SAF=112;SAP=246.215;SAR=0;SRF=54;SRP=120.27;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:104:43,61:43:1457:61:2109:-158.775,0,-100.106 1/1:18:1,17:1:34:17:581:-49.2147,-2.01963,0 0/1:44:10,34:10:349:34:1174:-92.7206,0,-18.5015 dDocent_Contig_3126 22 . A G 204.953 . AB=0.113636;ABP=288.263;AC=2;AF=0.333333;AN=6;AO=26;CIGAR=1X;DP=246;DPB=246;DPRA=0;EPP=59.4686;EPPR=480.734;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=1035;QR=8781;RO=220;RPL=0;RPP=59.4686;RPPR=480.734;RPR=26;RUN=1;SAF=26;SAP=59.4686;SAR=0;SRF=220;SRP=480.734;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:166:148,18:148:5925:18:717:-14.8844,0,-483.063 0/0:26:25,1:25:975:1:40:0,-3.8311,-84.0505 0/1:54:47,7:47:1881:7:278:-9.1338,0,-153.241 dDocent_Contig_3129 41 . A G 90.1343 . AB=0.157895;ABP=41.6397;AC=1;AF=0.166667;AN=6;AO=8;CIGAR=1X;DP=99;DPB=99;DPRA=1.65217;EPP=20.3821;EPPR=200.614;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=322;QR=3534;RO=91;RPL=0;RPP=20.3821;RPPR=200.614;RPR=8;RUN=1;SAF=8;SAP=20.3821;SAR=0;SRF=91;SRP=200.614;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:38:32,6:32:1238:6:240:-10.5363,0,-100.255 0/0:23:23,0:23:880:0:0:0,-6.92369,-79.496 0/0:38:36,2:36:1416:2:82:0,-3.65946,-119.918 dDocent_Contig_3130 14 . G A 2029.01 . AB=0.492857;ABP=3.07234;AC=3;AF=0.5;AN=6;AO=69;CIGAR=1X;DP=140;DPB=140;DPRA=0;EPP=152.842;EPPR=157.185;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=0.913043;PAIREDR=0.985915;PAO=0;PQA=0;PQR=0;PRO=0;QA=2774;QR=2828;RO=71;RPL=0;RPP=152.842;RPPR=157.185;RPR=69;RUN=1;SAF=69;SAP=152.842;SAR=0;SRF=71;SRP=157.185;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:65:39,26:39:1535:26:1048:-75.0432,0,-118.824 0/1:20:8,12:8:316:12:475:-37.0796,0,-22.7848 0/1:55:24,31:24:977:31:1251:-96.3012,0,-71.6692 dDocent_Contig_3131 1 . N G 90.6173 . AB=0;ABP=0;AC=2;AF=1;AN=2;AO=3;CIGAR=1X;DP=3;DPB=3;DPRA=0;EPP=9.52472;EPPR=0;GTI=0;LEN=1;MEANALT=1;MQM=33;MQMR=0;NS=1;NUMALT=1;ODDS=6.68461;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=123;QR=0;RO=0;RPL=0;RPP=9.52472;RPPR=0;RPR=3;RUN=1;SAF=3;SAP=9.52472;SAR=0;SRF=0;SRP=0;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL ./.:.:.:.:.:.:.:. ./.:.:.:.:.:.:.:. 1/1:3:0,3:0:0:3:123:-9.06119,-0.90309,0 dDocent_Contig_3132 24 . T C 5799.74 . AB=0.65493;ABP=62.2212;AC=3;AF=0.5;AN=6;AO=186;CIGAR=1X;DP=284;DPB=284;DPRA=0;EPP=406.904;EPPR=215.815;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=1.38778e-17;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=7451;QR=3909;RO=98;RPL=0;RPP=406.904;RPPR=215.815;RPR=186;RUN=1;SAF=186;SAP=406.904;SAR=0;SRF=98;SRP=215.815;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:144:48,96:48:1901:96:3864:-304.395,0,-127.944 0/1:75:27,48:27:1087:48:1894:-148.079,0,-75.5371 0/1:65:23,42:23:921:42:1693:-133.023,0,-63.6307 dDocent_Contig_3133 98 . N C 60.7946 . AB=0;ABP=0;AC=2;AF=1;AN=2;AO=2;CIGAR=1X;DP=2;DPB=2;DPRA=0;EPP=7.35324;EPPR=0;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=0;NS=1;NUMALT=1;ODDS=5.99146;PAIRED=1;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=64;QR=0;RO=0;RPL=2;RPP=7.35324;RPPR=0;RPR=0;RUN=1;SAF=2;SAP=7.35324;SAR=0;SRF=0;SRP=0;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL ./.:.:.:.:.:.:.:. 1/1:2:0,2:0:0:2:64:-6.07837,-0.60206,0 ./.:.:.:.:.:.:.:. dDocent_Contig_3134 21 . C T 221.024 . AB=0.154639;ABP=103.502;AC=2;AF=0.333333;AN=6;AO=16;CIGAR=1X;DP=122;DPB=122;DPRA=0;EPP=37.7539;EPPR=233.186;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=6.93889e-18;PAIRED=0.25;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=642;QR=4254;RO=106;RPL=0;RPP=37.7539;RPPR=233.186;RPR=16;RUN=1;SAF=16;SAP=37.7539;SAR=0;SRF=106;SRP=233.186;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:53:46,7:46:1851:7:275:-9.16068,0,-150.84 0/0:25:24,1:24:953:1:41:0,-3.43118,-81.9755 0/1:44:36,8:36:1450:8:326:-16.4645,0,-117.5 dDocent_Contig_3135 50 . G A 32.0169 . AB=0.102564;ABP=56.5176;AC=1;AF=0.166667;AN=6;AO=4;CIGAR=1X2M1X1M1X;DP=57;DPB=57;DPRA=1.08333;EPP=11.6962;EPPR=89.8692;GTI=0;LEN=1;MEANALT=3.5;MQM=31;MQMR=60;NS=3;NUMALT=3;ODDS=0;PAIRED=0;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=140;QR=1380;RO=40;RPL=4;RPP=11.6962;RPPR=89.8692;RPR=0;RUN=1;SAF=4;SAP=11.6962;SAR=0;SRF=40;SRP=89.8692;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|0:24:14,2,2,5:14:504:2,2,5:70,70,174:-4.51979,-5.34741,-45.9389,-3.02203,-40.8523,-43.6338,0,-37.8183,-35.5098,-39.6922 0|1:15:11,2,1,1:11:377:2,1,1:70,35,40:-2.10199,0,-30.0131,-2.56499,-27.7716,-32.8817,-2.89821,-28.0959,-30.6632,-33.2056 0|0:18:15,0,0,2:15:499:0,0,2:0,0,69:0,-4.51545,-44.9649,-4.51545,-44.9649,-44.9649,-2.33661,-42.6415,-42.6415,-42.0394 dDocent_Contig_3137 38 . G A 495.488 . AB=0.377358;ABP=9.93443;AC=3;AF=0.5;AN=6;AO=20;CIGAR=1X;DP=53;DPB=53;DPRA=0;EPP=46.4397;EPPR=74.6689;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=777;QR=1329;RO=33;RPL=0;RPP=46.4397;RPPR=74.6689;RPR=20;RUN=1;SAF=20;SAP=46.4397;SAR=0;SRF=33;SRP=74.6689;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:22:8,14:8:326:14:541:-42.4004,0,-23.0872 0/1:17:14,3:14:565:3:114:-5.5132,0,-46.0749 0/1:14:11,3:11:438:3:122:-7.15807,0,-35.5579 dDocent_Contig_3138 52 . G A 709.371 . AB=0.298969;ABP=37.0599;AC=3;AF=0.5;AN=6;AO=29;CIGAR=1X;DP=97;DPB=97;DPRA=0;EPP=65.983;EPPR=150.67;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=1162;QR=2683;RO=68;RPL=29;RPP=65.983;RPPR=150.67;RPR=0;RUN=1;SAF=29;SAP=65.983;SAR=0;SRF=68;SRP=150.67;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:52:42,10:42:1639:10:405:-21.1571,0,-132.089 0/1:19:11,8:11:436:8:325:-23.9001,0,-33.8747 0/1:26:15,11:15:608:11:432:-31.4029,0,-47.2311 dDocent_Contig_3139 49 . T C 394.269 . AB=0.24;ABP=47.0478;AC=2;AF=0.333333;AN=6;AO=26;CIGAR=3X;DP=191;DPB=191;DPRA=0;EPP=59.4686;EPPR=361.303;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=1024;QR=6608;RO=165;RPL=26;RPP=59.4686;RPPR=361.303;RPR=0;RUN=1;SAF=26;SAP=59.4686;SAR=0;SRF=165;SRP=361.303;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|0:116:108,8:108:4322:8:304:0,-7.20591,-361.225 0|1:22:17,5:17:678:5:201:-11.8484,0,-54.7267 0|1:53:40,13:40:1608:13:519:-31.1013,0,-128.998 dDocent_Contig_3140 7 . C A 662.805 . AB=0.0282258;ABP=482.45;AC=0;AF=0;AN=6;AO=7;CIGAR=1M1X5M1X3M;DP=278;DPB=284.273;DPRA=4.13333;EPP=18.2106;EPPR=419.933;GTI=0;LEN=1;MEANALT=5;MQM=60;MQMR=60;NS=3;NUMALT=4;ODDS=0;PAIRED=1;PAIREDR=0.994792;PAO=0;PQA=0;PQR=0;PRO=0;QA=263;QR=7466;RO=192;RPL=0;RPP=18.2106;RPPR=419.933;RPR=7;RUN=1;SAF=7;SAP=18.2106;SAR=0;SRF=192;SRP=419.933;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|0:185:127,9,1,20,25:127:4929:9,1,20,25:354,30,740,991:-43.3813,-74.6467,-476.935,-79.2141,-477.246,-483.937,-21.0592,-419.113,-423.705,-420.083,0,-398.079,-402.67,-344.535,-397.543 0|0:30:22,4,0,1,1:22:858:4,0,1,1:150,0,35,30:0,-3.61726,-72.9896,-6.62266,-74.1937,-77.2706,-3.75724,-71.3472,-74.4227,-74.1217,-4.21353,-71.7984,-74.8736,-72.0258,-74.5726 0|0:63:43,0,6,2,12:43:1679:0,6,2,12:0,233,78,478:-26.4221,-39.3664,-177.39,-20.2231,-158.245,-156.439,-32.9552,-170.979,-151.833,-170.377,0,-138.028,-118.882,-131.616,-134.416 dDocent_Contig_3141 16 . T C 2029.85 . AB=0.168237;ABP=713.339;AC=3;AF=0.5;AN=6;AO=125;CIGAR=1X;DP=743;DPB=743;DPRA=0;EPP=274.444;EPPR=1344.98;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=5.55112e-17;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=4793;QR=23569;RO=618;RPL=0;RPP=274.444;RPPR=1344.98;RPR=125;RUN=1;SAF=125;SAP=274.444;SAR=0;SRF=618;SRP=1344.98;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:419:373,46:373:14243:46:1764:-32.8856,0,-1155.09 0/1:106:73,33:73:2749:33:1259:-81.6927,0,-215.693 0/1:218:172,46:172:6577:46:1770:-93.9295,0,-526.209 dDocent_Contig_3144 1 . N G 76.8682 . AB=0;ABP=0;AC=2;AF=1;AN=2;AO=2;CIGAR=1X;DP=2;DPB=2;DPRA=0;EPP=7.35324;EPPR=0;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=0;NS=1;NUMALT=1;ODDS=5.99146;PAIRED=1;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=81;QR=0;RO=0;RPL=0;RPP=7.35324;RPPR=0;RPR=2;RUN=1;SAF=2;SAP=7.35324;SAR=0;SRF=0;SRP=0;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL ./.:.:.:.:.:.:.:. ./.:.:.:.:.:.:.:. 1/1:2:0,2:0:0:2:81:-7.68573,-0.60206,0 dDocent_Contig_3145 7 . C A 1284.34 . AB=0.54023;ABP=4.23331;AC=3;AF=0.5;AN=6;AO=47;CIGAR=2X;DP=87;DPB=87;DPRA=0;EPP=105.07;EPPR=87.6977;GTI=0;LEN=1;MEANALT=1.33333;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=0.93617;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=1769;QR=1495;RO=39;RPL=0;RPP=105.07;RPPR=87.6977;RPR=47;RUN=1;SAF=47;SAP=105.07;SAR=0;SRF=39;SRP=87.6977;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|1:61:26,35:26:993:35:1313:-100.1,0,-71.3184 0|1:11:6,4:6:230:4:155:-10.926,0,-17.6679 0|1:15:7,8:7:272:8:301:-22.9308,0,-20.3318 dDocent_Contig_3146 71 . C T 300.315 . AB=0.40625;ABP=5.45321;AC=1;AF=0.166667;AN=6;AO=13;CIGAR=1X;DP=92;DPB=92;DPRA=1.06667;EPP=31.2394;EPPR=174.557;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=454;QR=2730;RO=79;RPL=13;RPP=31.2394;RPPR=174.557;RPR=0;RUN=1;SAF=13;SAP=31.2394;SAR=0;SRF=79;SRP=174.557;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:32:19,13:19:653:13:454:-31.5544,0,-49.4592 0/0:10:10,0:10:357:0:0:0,-3.0103,-32.4719 0/0:50:50,0:50:1720:0:0:0,-15.0515,-155.087 dDocent_Contig_3147 32 . C A 880.454 . AB=0.262069;ABP=74.3095;AC=3;AF=0.5;AN=6;AO=38;CIGAR=1X;DP=145;DPB=145;DPRA=0;EPP=85.5263;EPPR=235.358;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=1513;QR=4291;RO=107;RPL=0;RPP=85.5263;RPPR=235.358;RPR=38;RUN=1;SAF=38;SAP=85.5263;SAR=0;SRF=107;SRP=235.358;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:107:83,24:83:3325:24:946:-53.2304,0,-267.08 0/1:14:8,6:8:324:6:242:-17.9431,0,-25.3148 0/1:24:16,8:16:642:8:325:-22.3947,0,-50.8898 dDocent_Contig_3149 12 . C T 168.422 . AB=0.121429;ABP=177.286;AC=1;AF=0.166667;AN=6;AO=30;CIGAR=1X;DP=393;DPB=393;DPRA=0;EPP=68.1545;EPPR=791.255;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=59.9697;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=1193;QR=14470;RO=363;RPL=0;RPP=68.1545;RPPR=791.255;RPR=30;RUN=1;SAF=30;SAP=68.1545;SAR=0;SRF=363;SRP=791.255;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:188:176,12:176:7033:12:481:0,-12.9521,-588.967 0/0:65:64,1:64:2565:1:40:0,-15.5713,-226.993 0/1:140:123,17:123:4872:17:672:-18.6661,0,-396.245 dDocent_Contig_3150 14 . G A 53.8057 . AB=0.166667;ABP=31.9633;AC=2;AF=0.333333;AN=6;AO=5;CIGAR=1X;DP=49;DPB=49;DPRA=0.789474;EPP=6.91895;EPPR=53.5464;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=57.8182;NS=3;NUMALT=1;ODDS=0;PAIRED=0.8;PAIREDR=0.863636;PAO=0;PQA=0;PQR=0;PRO=0;QA=191;QR=1698;RO=44;RPL=0;RPP=13.8677;RPPR=98.5551;RPR=5;RUN=1;SAF=4;SAP=6.91895;SAR=1;SRF=38;SRP=53.5464;SRR=6;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:22:19,3:19:741:3:118:-4.37954,0,-60.3866 0/0:19:19,0:19:724:0:0:0,-5.71957,-65.117 0/1:8:6,2:6:233:2:73:-4.52286,0,-18.9284 dDocent_Contig_3151 29 . T C 273.621 . AB=0.142857;ABP=41.7866;AC=1;AF=0.166667;AN=6;AO=5;CIGAR=2X;DP=137;DPB=137;DPRA=0.57377;EPP=13.8677;EPPR=254.901;GTI=0;LEN=1;MEANALT=2;MQM=60;MQMR=60;NS=3;NUMALT=2;ODDS=0;PAIRED=0;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=196;QR=3910;RO=116;RPL=0;RPP=13.8677;RPPR=254.901;RPR=5;RUN=1;SAF=5;SAP=13.8677;SAR=0;SRF=116;SRP=254.901;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|0:61:57,0,3:57:1921:0,3:0,113:0,-17.1587,-172.797,-7.87301,-163.537,-162.634 0|0:41:30,0,11:30:1013:0,11:0,394:-23.4547,-32.4856,-114.577,0,-82.4444,-79.1331 0|1:35:29,5,1:29:976:5,1:196,34:-7.43029,0,-77.5702,-13.4108,-76.3173,-92.1414 dDocent_Contig_3152 117 . A G 5302.61 . AB=0.814815;ABP=212.195;AC=3;AF=0.5;AN=6;AO=198;CIGAR=1X;DP=243;DPB=243;DPRA=0;EPP=432.962;EPPR=100.727;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=6738;QR=1548;RO=45;RPL=0;RPP=432.962;RPPR=100.727;RPR=198;RUN=1;SAF=0;SAP=432.962;SAR=198;SRF=0;SRP=100.727;SRR=45;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:105:17,88:17:588:88:3027:-241.067,0,-21.6361 0/1:52:20,32:20:673:32:1077:-81.5802,0,-45.2277 0/1:86:8,78:8:287:78:2634:-211.422,0,-0.2879 dDocent_Contig_3153 8 . A T 135.414 . AB=0.321429;ABP=10.7656;AC=1;AF=0.166667;AN=6;AO=9;CIGAR=1X;DP=54;DPB=54;DPRA=2.15385;EPP=22.5536;EPPR=100.727;GTI=0;LEN=1;MEANALT=1;MQM=31.1111;MQMR=46.2;NS=3;NUMALT=1;ODDS=0;PAIRED=0;PAIREDR=0.533333;PAO=0;PQA=0;PQR=0;PRO=0;QA=346;QR=1714;RO=45;RPL=0;RPP=22.5536;RPPR=100.727;RPR=9;RUN=1;SAF=9;SAP=22.5536;SAR=0;SRF=45;SRP=100.727;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:22:22,0:22:847:0:0:0,-6.62266,-68.4477 0/0:4:4,0:4:141:0:0:0,-1.20412,-7.71989 0/1:28:19,9:19:726:9:346:-15.3652,0,-50.6675 dDocent_Contig_3154 11 . T C 339.094 . AB=0.151724;ABP=155.777;AC=2;AF=0.333333;AN=6;AO=27;CIGAR=1X;DP=212;DPB=212;DPRA=0;EPP=61.6401;EPPR=404.733;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=1097;QR=7076;RO=185;RPL=0;RPP=61.6401;RPPR=404.733;RPR=27;RUN=1;SAF=27;SAP=61.6401;SAR=0;SRF=185;SRP=404.733;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:67:62,5:62:2360:5:204:0,-1.42498,-193.856 0/1:64:55,9:55:2114:9:364:-13.8588,0,-171.213 0/1:81:68,13:68:2602:13:529:-23.5734,0,-209.981 dDocent_Contig_3155 23 . T G 5786.64 . AB=0.865385;ABP=244.211;AC=3;AF=0.5;AN=6;AO=180;CIGAR=1X;DP=208;DPB=208;DPRA=0;EPP=393.875;EPPR=61.6401;GTI=0;LEN=1;MEANALT=1.33333;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=1.38778e-17;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=7182;QR=1072;RO=27;RPL=0;RPP=393.875;RPPR=61.6401;RPR=180;RUN=1;SAF=180;SAP=393.875;SAR=0;SRF=27;SRP=61.6401;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:119:12,106:12:489:106:4228:-344.629,0,-8.52216 0/1:14:4,10:4:162:10:407:-32.7762,0,-10.7525 0/1:75:11,64:11:421:64:2547:-206.781,0,-15.6595 dDocent_Contig_3156 129 . C A 73.548 . AB=0.15625;ABP=35.8538;AC=1;AF=0.166667;AN=6;AO=11;CIGAR=1X;DP=145;DPB=145;DPRA=1.35897;EPP=26.8965;EPPR=291.816;GTI=0;LEN=1;MEANALT=1.5;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=0.909091;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=436;QR=5284;RO=133;RPL=0;RPP=26.8965;RPPR=291.816;RPR=11;RUN=1;SAF=0;SAP=26.8965;SAR=11;SRF=0;SRP=291.816;SRR=133;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:74:68,6:68:2697:6:233:0,-0.938292,-221.513 0/1:32:26,5:26:1042:5:203:-9.17854,0,-84.6377 0/0:39:39,0:39:1545:0:0:0,-11.7402,-139.287 dDocent_Contig_3157 60 . G A 224.32 . AB=0.194444;ABP=61.3988;AC=3;AF=0.5;AN=6;AO=14;CIGAR=1X;DP=72;DPB=72;DPRA=0;EPP=33.4109;EPPR=128.956;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=3.46945e-18;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=524;QR=2302;RO=58;RPL=14;RPP=33.4109;RPPR=128.956;RPR=0;RUN=1;SAF=14;SAP=33.4109;SAR=0;SRF=58;SRP=128.956;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:23:21,2:21:845:2:79:-0.573942,0,-69.4384 0/1:34:25,9:25:997:9:358:-22.3478,0,-79.7938 0/1:15:12,3:12:460:3:87:-3.59813,0,-37.2333 dDocent_Contig_3158 11 . G A 109.899 . AB=0.0454545;ABP=81.9729;AC=0;AF=0;AN=6;AO=10;CIGAR=1X1M1X2M1X2M1X;DP=183;DPB=183;DPRA=0;EPP=24.725;EPPR=337.417;GTI=0;LEN=1;MEANALT=4;MQM=60;MQMR=60;NS=3;NUMALT=2;ODDS=0;PAIRED=0;PAIREDR=0.746753;PAO=0;PQA=0;PQR=0;PRO=0;QA=385;QR=6052;RO=154;RPL=0;RPP=24.725;RPPR=337.417;RPR=10;RUN=1;SAF=10;SAP=24.725;SAR=0;SRF=154;SRP=337.417;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|0:91:78,5,4:78:3073:5,4:187,162:0,-8.17971,-259.472,-10.1173,-247.618,-261.726 0|0:44:34,2,7:34:1322:2,7:78,279:-12.8138,-16.6313,-124.686,0,-102.31,-106.615 0|0:48:42,3,1:42:1657:3,1:120,41:0,-2.72146,-138.216,-9.24989,-135.735,-145.32 dDocent_Contig_3159 53 . T C 17155.9 . AB=0;ABP=0;AC=6;AF=1;AN=6;AO=492;CIGAR=1X1M1X;DP=493;DPB=493;DPRA=0;EPP=1071.37;EPPR=0;GTI=0;LEN=1;MEANALT=1.33333;MQM=57.3638;MQMR=0;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=19098;QR=0;RO=0;RPL=492;RPP=1071.37;RPPR=0;RPR=0;RUN=1;SAF=492;SAP=1071.37;SAR=0;SRF=0;SRP=0;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 1|1:305:0,305:0:0:305:11883:-1067.2,-91.8142,0 1|1:69:0,69:0:0:69:2642:-237.531,-20.7711,0 1|1:119:0,118:0:0:118:4573:-410.381,-35.5215,0 dDocent_Contig_3160 7 . A C 13896.7 . AB=0.821918;ABP=200.138;AC=4;AF=0.666667;AN=6;AO=476;CIGAR=1X1M1X;DP=539;DPB=539;DPRA=0;EPP=1036.63;EPPR=133.299;GTI=0;LEN=1;MEANALT=2;MQM=40.0084;MQMR=60;NS=3;NUMALT=1;ODDS=2.77556e-17;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=18079;QR=2279;RO=60;RPL=0;RPP=1036.63;RPPR=133.299;RPR=476;RUN=1;SAF=476;SAP=1036.63;SAR=0;SRF=60;SRP=133.299;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 1|1:320:22,296:22:840:296:11269:-879.854,-20.1507,0 0|1:81:15,66:15:567:66:2505:-188.614,0,-26.9883 0|1:138:23,114:23:872:114:4305:-324.721,0,-37.1949 dDocent_Contig_3162 1 . N G 74.0386 . AB=0;ABP=0;AC=2;AF=1;AN=2;AO=2;CIGAR=1X;DP=2;DPB=2;DPRA=0;EPP=7.35324;EPPR=0;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=0;NS=1;NUMALT=1;ODDS=5.99146;PAIRED=1;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=78;QR=0;RO=0;RPL=0;RPP=7.35324;RPPR=0;RPR=2;RUN=1;SAF=2;SAP=7.35324;SAR=0;SRF=0;SRP=0;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL ./.:.:.:.:.:.:.:. 1/1:2:0,2:0:0:2:78:-7.40278,-0.60206,0 ./.:.:.:.:.:.:.:. dDocent_Contig_3163 12 . T C 431.406 . AB=0.470588;ABP=3.26577;AC=2;AF=0.333333;AN=6;AO=16;CIGAR=1X;DP=40;DPB=40;DPRA=2.83333;EPP=37.7539;EPPR=55.1256;GTI=0;LEN=1;MEANALT=1;MQM=53.25;MQMR=60;NS=3;NUMALT=1;ODDS=3.46945e-18;PAIRED=0.625;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=638;QR=966;RO=24;RPL=0;RPP=37.7539;RPPR=55.1256;RPR=16;RUN=1;SAF=16;SAP=37.7539;SAR=0;SRF=24;SRP=55.1256;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:18:11,7:11:442:7:278:-19.9706,0,-34.7162 0/1:16:7,9:7:283:9:360:-26.6928,0,-21.0267 0/0:6:6,0:6:241:0:0:0,-1.80618,-22.0663 dDocent_Contig_3164 98 . N G 309.306 . AB=0;ABP=0;AC=4;AF=1;AN=4;AO=10;CIGAR=1X;DP=10;DPB=10;DPRA=0;EPP=24.725;EPPR=0;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=0;NS=2;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=333;QR=0;RO=0;RPL=10;RPP=24.725;RPPR=0;RPR=0;RUN=1;SAF=10;SAP=24.725;SAR=0;SRF=0;SRP=0;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL ./.:.:.:.:.:.:.:. 1/1:6:0,6:0:0:6:197:-18.0534,-1.80618,0 1/1:4:0,4:0:0:4:136:-12.576,-1.20412,0 dDocent_Contig_3166 16 . T C 1474.64 . AB=0.309783;ABP=60.8376;AC=3;AF=0.5;AN=6;AO=57;CIGAR=1X;DP=184;DPB=184;DPRA=0;EPP=126.784;EPPR=278.787;GTI=0;LEN=1;MEANALT=1;MQM=59.5263;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=2305;QR=5080;RO=127;RPL=0;RPP=126.784;RPPR=278.787;RPR=57;RUN=1;SAF=57;SAP=126.784;SAR=0;SRF=127;SRP=278.787;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:79:59,20:59:2373:20:808:-49.2304,0,-189.939 0/1:34:17,17:17:667:17:688:-52.0095,0,-50.1222 0/1:71:51,20:51:2040:20:809:-51.7467,0,-162.417 dDocent_Contig_3167 40 . G A 1272.65 . AB=0.244635;ABP=134.985;AC=3;AF=0.5;AN=6;AO=57;CIGAR=1X;DP=233;DPB=233;DPRA=0;EPP=126.784;EPPR=385.189;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=2244;QR=6973;RO=176;RPL=0;RPP=126.784;RPPR=385.189;RPR=57;RUN=1;SAF=57;SAP=126.784;SAR=0;SRF=176;SRP=385.189;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:131:105,26:105:4143:26:1013:-52.0299,0,-333.413 0/1:40:25,15:25:997:15:596:-41.9367,0,-77.9864 0/1:62:46,16:46:1833:16:635:-38.821,0,-146.512 dDocent_Contig_3168 71 . G T 5141.11 . AB=0.615854;ABP=41.2494;AC=3;AF=0.5;AN=6;AO=202;CIGAR=1X;DP=328;DPB=328;DPRA=0;EPP=441.648;EPPR=274.444;GTI=0;LEN=1;MEANALT=1.33333;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=6863;QR=4451;RO=125;RPL=202;RPP=441.648;RPPR=274.444;RPR=0;RUN=1;SAF=202;SAP=441.648;SAR=0;SRF=125;SRP=274.444;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:144:60,83:60:2164:83:2841:-212.509,0,-151.601 0/1:62:15,47:15:542:47:1624:-127.772,0,-30.4439 0/1:122:50,72:50:1745:72:2398:-179.353,0,-120.606 dDocent_Contig_3169 17 . C T 2433.83 . AB=0.363265;ABP=42.797;AC=3;AF=0.5;AN=6;AO=89;CIGAR=1X;DP=245;DPB=245;DPRA=0;EPP=196.271;EPPR=341.76;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=3576;QR=6257;RO=156;RPL=0;RPP=196.271;RPPR=341.76;RPR=89;RUN=1;SAF=89;SAP=196.271;SAR=0;SRF=156;SRP=341.76;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:120:80,40:80:3172:40:1620:-109.901,0,-249.417 0/1:43:25,18:25:1015:18:722:-52.3601,0,-78.699 0/1:82:51,31:51:2070:31:1234:-86.6443,0,-161.79 dDocent_Contig_3171 23 . G A 60.4808 . AB=0.114754;ABP=81.6461;AC=1;AF=0.166667;AN=6;AO=9;CIGAR=1X;DP=135;DPB=135;DPRA=1.1875;EPP=22.5536;EPPR=276.616;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=363;QR=5002;RO=126;RPL=0;RPP=22.5536;RPPR=276.616;RPR=9;RUN=1;SAF=9;SAP=22.5536;SAR=0;SRF=126;SRP=276.616;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:61:54,7:54:2152:7:284:-7.57096,0,-175.495 0/0:34:32,2:32:1257:2:79:0,-2.73778,-105.913 0/0:40:40,0:40:1593:0:0:0,-12.0412,-143.608 dDocent_Contig_3172 20 . C G 1890.67 . AB=0.038835;ABP=193.278;AC=0;AF=0;AN=6;AO=4;CIGAR=3X;DP=120;DPB=120;DPRA=0;EPP=11.6962;EPPR=83.3548;GTI=0;LEN=1;MEANALT=3;MQM=60;MQMR=60;NS=3;NUMALT=3;ODDS=1.38778e-17;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=156;QR=1484;RO=37;RPL=0;RPP=11.6962;RPPR=83.3548;RPR=4;RUN=1;SAF=4;SAP=11.6962;SAR=0;SRF=37;SRP=83.3548;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|0:56:19,3,23,11:19:764:3,23,11:117,916,445:-69.6999,-65.8028,-127.861,0,-53.3444,-56.037,-38.727,-92.0725,-26.2691,-98.378 0|0:17:13,0,4,0:13:526:0,4,0:0,157,0:-9.39038,-13.3038,-56.6828,0,-43.774,-42.5699,-13.3038,-56.6828,-43.774,-56.6828 0|0:47:5,1,28,13:5:194:1,28,13:39,1094,522:-115.499,-113.799,-129.436,-27.0844,-39.8142,-34.5908,-73.9903,-86.7227,0,-86.0151 dDocent_Contig_3174 80 . T G 69.4037 . AB=0.1875;ABP=30.1537;AC=2;AF=0.333333;AN=6;AO=9;CIGAR=1X;DP=66;DPB=66;DPRA=0;EPP=22.5536;EPPR=126.784;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=303;QR=2028;RO=57;RPL=9;RPP=22.5536;RPPR=126.784;RPR=0;RUN=1;SAF=9;SAP=22.5536;SAR=0;SRF=57;SRP=126.784;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:34:31,3:31:1107:3:104:0,-0.531928,-90.2373 0/1:11:10,1:10:369:1:35:-0.187299,0,-30.2483 0/1:21:16,5:16:552:5:164:-8.76163,0,-43.6852 dDocent_Contig_3176 57 . G C 4383.48 . AB=0.0617284;ABP=138.151;AC=0;AF=0;AN=6;AO=5;CIGAR=2X;DP=171;DPB=171;DPRA=2.025;EPP=13.8677;EPPR=50.7827;GTI=0;LEN=1;MEANALT=3;MQM=60;MQMR=60;NS=3;NUMALT=2;ODDS=1.38778e-17;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=196;QR=848;RO=22;RPL=5;RPP=13.8677;RPPR=50.7827;RPR=0;RUN=1;SAF=5;SAP=13.8677;SAR=0;SRF=22;SRP=50.7827;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|0:81:7,5,66:7:280:5,66:196,2562:-208.372,-194.361,-215.921,0,-6.95518,-3.20747 0|0:50:12,0,38:12:452:0,38:0,1453:-115.98,-119.592,-156.623,0,-37.4078,-25.9687 0|0:40:3,0,37:3:116:0,37:0,1423:-117.51,-118.413,-127.941,-1.22418,-11.1381,0 dDocent_Contig_3177 16 . T A 302.947 . AB=0.135417;ABP=224.681;AC=3;AF=0.5;AN=6;AO=26;CIGAR=1X;DP=192;DPB=192;DPRA=0;EPP=59.4686;EPPR=363.475;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=50.0301;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=0.740964;PAO=0;PQA=0;PQR=0;PRO=0;QA=1028;QR=6629;RO=166;RPL=0;RPP=59.4686;RPPR=363.475;RPR=26;RUN=1;SAF=26;SAP=59.4686;SAR=0;SRF=166;SRP=363.475;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:112:99,13:99:3957:13:514:-12.8881,0,-280.114 0/1:29:21,8:21:826:8:311:-19.6217,0,-53.5458 0/1:51:46,5:46:1846:5:203:-3.30053,0,-136.868 dDocent_Contig_3178 13 . G C 978.965 . AB=0.349057;ABP=23.9875;AC=3;AF=0.5;AN=6;AO=37;CIGAR=1X7M;DP=106;DPB=105.625;DPRA=0;EPP=83.3548;EPPR=144.156;GTI=0;LEN=1;MEANALT=1.66667;MQM=60;MQMR=60;NS=3;NUMALT=2;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=1483;QR=2492;RO=65;RPL=0;RPP=83.3548;RPPR=144.156;RPR=37;RUN=1;SAF=37;SAP=83.3548;SAR=0;SRF=65;SRP=144.156;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|1:48:27,3,17:27:1009:3,17:117,676:-47.5292,-46.0416,-127.731,0,-72.9709,-77.4714 0|1:25:15,0,10:15:588:0,10:0,403:-29.1043,-33.6198,-81.9681,0,-48.7465,-45.7362 0|1:33:23,0,10:23:895:0,10:0,404:-26.7859,-33.7095,-107.247,0,-73.9364,-70.9261 dDocent_Contig_3180 107 . N C 62.6926 . AB=0;ABP=0;AC=2;AF=1;AN=2;AO=2;CIGAR=1X3M1X2M1X;DP=2;DPB=2;DPRA=0;EPP=7.35324;EPPR=0;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=0;NS=1;NUMALT=1;ODDS=5.99146;PAIRED=1;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=66;QR=0;RO=0;RPL=0;RPP=7.35324;RPPR=0;RPR=2;RUN=1;SAF=0;SAP=7.35324;SAR=2;SRF=0;SRP=0;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL .:.:.:.:.:.:.:. .:.:.:.:.:.:.:. 1|1:2:0,2:0:0:2:66:-6.26818,-0.60206,0 dDocent_Contig_3183 98 . N A 74.6652 . AB=0;ABP=0;AC=2;AF=1;AN=2;AO=3;CIGAR=1X;DP=3;DPB=3;DPRA=0;EPP=9.52472;EPPR=0;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=0;NS=1;NUMALT=1;ODDS=6.68461;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=80;QR=0;RO=0;RPL=3;RPP=9.52472;RPPR=0;RPR=0;RUN=1;SAF=3;SAP=9.52472;SAR=0;SRF=0;SRP=0;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL ./.:.:.:.:.:.:.:. ./.:.:.:.:.:.:.:. 1/1:3:0,3:0:0:3:80:-7.46598,-0.90309,0 dDocent_Contig_3184 21 . C A 15593.6 . AB=0;ABP=0;AC=6;AF=1;AN=6;AO=461;CIGAR=1X;DP=485;DPB=485;DPRA=0;EPP=1004.06;EPPR=52.9542;GTI=0;LEN=1;MEANALT=1.33333;MQM=59.9805;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=0.995662;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=18269;QR=933;RO=23;RPL=0;RPP=1004.06;RPPR=52.9542;RPR=461;RUN=1;SAF=461;SAP=1004.06;SAR=0;SRF=23;SRP=52.9542;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 1/1:177:0,177:0:0:177:7030:-632.361,-53.2823,0 1/1:121:8,113:8:324:113:4475:-373.179,-6.89544,0 1/1:187:15,171:15:609:171:6764:-553.345,-1.25283,0 dDocent_Contig_3186 12 . C T 298.232 . AB=0.18;ABP=91.9538;AC=3;AF=0.5;AN=6;AO=18;CIGAR=1X;DP=100;DPB=100;DPRA=0;EPP=42.0968;EPPR=181.071;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=59.9146;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=0.987805;PAO=0;PQA=0;PQR=0;PRO=0;QA=715;QR=3324;RO=82;RPL=0;RPP=42.0968;RPPR=181.071;RPR=18;RUN=1;SAF=18;SAP=42.0968;SAR=0;SRF=82;SRP=181.071;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:45:36,9:36:1461:9:363:-19.4879,0,-118.186 0/1:16:13,3:13:526:3:111:-5.53306,0,-42.8705 0/1:39:33,6:33:1337:6:241:-10.325,0,-108.827 dDocent_Contig_3187 31 . T A 63.4725 . AB=0.106383;ABP=66.2602;AC=1;AF=0.166667;AN=6;AO=5;CIGAR=4M1X1M;DP=164;DPB=173.333;DPRA=0.635135;EPP=13.8677;EPPR=328.731;GTI=0;LEN=1;MEANALT=2;MQM=60;MQMR=60;NS=3;NUMALT=2;ODDS=0;PAIRED=0;PAIREDR=0.846667;PAO=0;PQA=0;PQR=0;PRO=0;QA=188;QR=5809;RO=150;RPL=0;RPP=13.8677;RPPR=328.731;RPR=5;RUN=1;SAF=5;SAP=13.8677;SAR=0;SRF=150;SRP=328.731;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|0:74:74,0,0:74:2883:0,0:0,0:0,-22.2762,-259.609,-22.2762,-259.609,-259.609 0|1:47:41,1,5:41:1586:1,5:35,188:-3.07676,-12.5755,-142.548,0,-127.453,-128.795 0|0:43:35,6,0:35:1340:6,0:213,0:-6.78141,0,-108.13,-17.3175,-109.936,-127.287 dDocent_Contig_3188 53 . T G 2606.46 . AB=0.350877;ABP=58.059;AC=3;AF=0.5;AN=6;AO=100;CIGAR=1X1M3D1X;DP=285;DPB=235;DPRA=0;EPP=220.158;EPPR=402.561;GTI=0;LEN=1;MEANALT=1.33333;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=3903;QR=7179;RO=184;RPL=100;RPP=220.158;RPPR=402.561;RPR=0;RUN=1;SAF=100;SAP=220.158;SAR=0;SRF=184;SRP=402.561;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|1:146:100,46:100:3921:46:1806:-118.809,0,-308.983 0|1:46:27,19:27:1041:19:736:-52.7132,0,-80.142 0|1:93:57,35:57:2217:35:1361:-94.6475,0,-171.624 dDocent_Contig_3189 88 . T G 9900.12 . AB=0;ABP=0;AC=6;AF=1;AN=6;AO=345;CIGAR=1X;DP=368;DPB=368;DPRA=0;EPP=752.168;EPPR=50.7827;GTI=0;LEN=1;MEANALT=1.33333;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=1.38778e-17;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=11761;QR=762;RO=22;RPL=345;RPP=752.168;RPPR=50.7827;RPR=0;RUN=1;SAF=345;SAP=752.168;SAR=0;SRF=22;SRP=50.7827;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 1/1:212:15,196:15:519:196:6654:-551.947,-16.7909,0 1/1:37:1,36:1:35:36:1218:-106.421,-7.63948,0 1/1:119:6,113:6:208:113:3889:-331.167,-16.7629,0 dDocent_Contig_3190 11 . A G 1344.8 . AB=0.269231;ABP=99.2232;AC=3;AF=0.5;AN=6;AO=56;CIGAR=1X;DP=208;DPB=208;DPRA=0;EPP=124.613;EPPR=326.56;GTI=0;LEN=1;MEANALT=1.33333;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=2235;QR=5950;RO=149;RPL=0;RPP=124.613;RPPR=326.56;RPR=56;RUN=1;SAF=56;SAP=124.613;SAR=0;SRF=149;SRP=326.56;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:120:96,24:96:3849:24:956:-50.2153,0,-310.283 0/1:17:6,11:6:243:11:442:-35.0165,0,-17.1307 0/1:71:47,21:47:1858:21:837:-54.7708,0,-146.558 dDocent_Contig_3191 51 . A T 47.3948 . AB=0.131579;ABP=47.8112;AC=1;AF=0.166667;AN=6;AO=5;CIGAR=3M1X3M;DP=49;DPB=47.8571;DPRA=1.72727;EPP=13.8677;EPPR=89.8692;GTI=0;LEN=1;MEANALT=2;MQM=60;MQMR=60;NS=3;NUMALT=3;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=192;QR=1573;RO=40;RPL=5;RPP=13.8677;RPPR=89.8692;RPR=0;RUN=1;SAF=5;SAP=13.8677;SAR=0;SRF=40;SRP=89.8692;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|0:24:20,0,2,2:20:786:0,2,2:0,79,79:-0.480359,-6.50096,-71.1459,0,-64.6448,-64.0428,0,-64.6448,-58.1437,-64.0428 0|0:11:11,0,0,0:11:429:0,0,0:0,0,0:0,-3.31133,-38.9634,-3.31133,-38.9634,-38.9634,-3.31133,-38.9634,-38.9634,-38.9634 0|1:14:9,2,0,3:9:358:2,0,3:74,0,113:-6.55463,-3.21294,-32.1031,-9.2639,-32.7051,-38.7555,0,-23.4504,-29.499,-28.5959 dDocent_Contig_3192 9 . A T 994.308 . AB=0.294521;ABP=56.5535;AC=3;AF=0.5;AN=6;AO=43;CIGAR=1X;DP=146;DPB=146;DPRA=0;EPP=96.3836;EPPR=226.672;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=0.864078;PAO=0;PQA=0;PQR=0;PRO=0;QA=1643;QR=3949;RO=103;RPL=0;RPP=96.3836;RPPR=226.672;RPR=43;RUN=1;SAF=43;SAP=96.3836;SAR=0;SRF=103;SRP=226.672;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:76:56,20:56:2155:20:767:-46.4804,0,-171.297 0/1:20:13,7:13:494:7:273:-18.9174,0,-38.7853 0/1:50:34,16:34:1300:16:603:-39.5558,0,-102.238 dDocent_Contig_3193 11 . A G 9632.2 . AB=0.419655;ABP=45.2315;AC=3;AF=0.5;AN=6;AO=316;CIGAR=1X2M;DP=753;DPB=753;DPRA=0;EPP=689.196;EPPR=491.592;GTI=0;LEN=1;MEANALT=8;MQM=60;MQMR=60;NS=3;NUMALT=3;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=12588;QR=8994;RO=225;RPL=0;RPP=689.196;RPPR=491.592;RPR=316;RUN=1;SAF=316;SAP=689.196;SAR=0;SRF=225;SRP=491.592;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|1:408:101,11,74,193:101:4035:11,74,193:433,2952,7736:-606.921,-601.707,-930.735,-394.218,-690.939,-704.28,0,-296.722,-89.2321,-274.24 0|1:106:34,6,19,39:34:1339:6,19,39:244,761,1539:-116.378,-106.486,-214.825,-63.919,-153.937,-168.345,0,-90.0153,-47.4486,-98.4024 0|1:239:90,9,40,84:90:3620:9,40,84:365,1563,3313:-245.444,-242.435,-538.051,-144.06,-412.283,-430.342,0,-268.224,-169.849,-273.038 dDocent_Contig_3195 23 . C T 230.937 . AB=0.147826;ABP=126.898;AC=2;AF=0.333333;AN=6;AO=25;CIGAR=1X;DP=212;DPB=212;DPRA=0;EPP=57.2971;EPPR=406.904;GTI=0;LEN=1;MEANALT=1.33333;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=0.973118;PAO=0;PQA=0;PQR=0;PRO=0;QA=993;QR=7523;RO=186;RPL=0;RPP=57.2971;RPPR=406.904;RPR=25;RUN=1;SAF=25;SAP=57.2971;SAR=0;SRF=186;SRP=406.904;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:97:89,8:89:3597:8:319:0,-0.124826,-294.668 0/1:49:37,11:37:1501:11:437:-24.8277,0,-120.47 0/1:66:60,6:60:2425:6:237:-1.83414,0,-198.52 dDocent_Contig_3196 140 . G A 316.188 . AB=0.419355;ABP=4.76149;AC=2;AF=0.333333;AN=6;AO=13;CIGAR=1X;DP=65;DPB=65;DPRA=0.455882;EPP=31.2394;EPPR=115.927;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=1.73472e-18;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=486;QR=1976;RO=52;RPL=0;RPP=31.2394;RPPR=115.927;RPR=13;RUN=1;SAF=0;SAP=31.2394;SAR=13;SRF=0;SRP=115.927;SRR=52;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:34:34,0:34:1306:0:0:0,-10.235,-117.826 0/1:14:12,2:12:441:2:78:-3.18905,0,-35.816 0/1:17:6,11:6:229:11:408:-31.9433,0,-15.858 dDocent_Contig_3197 81 . A G 1325.43 . AB=0.241158;ABP=183.997;AC=3;AF=0.5;AN=6;AO=75;CIGAR=1X;DP=311;DPB=311;DPRA=0;EPP=165.871;EPPR=489.751;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=59.6864;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=0.987288;PAO=0;PQA=0;PQR=0;PRO=0;QA=2564;QR=7997;RO=236;RPL=75;RPP=165.871;RPPR=515.478;RPR=0;RUN=1;SAF=75;SAP=165.871;SAR=0;SRF=233;SRP=489.751;SRR=3;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:166:127,39:127:4294:39:1347:-71.5593,0,-335.552 0/1:32:23,9:23:756:9:290:-16.7797,0,-58.712 0/1:113:86,27:86:2947:27:927:-49.7267,0,-231.462 dDocent_Contig_3198 9 . T C 229.125 . AB=0.145038;ABP=146.377;AC=2;AF=0.333333;AN=6;AO=22;CIGAR=1X;DP=260;DPB=260;DPRA=0;EPP=50.7827;EPPR=517.649;GTI=0;LEN=1;MEANALT=1.33333;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=1.38778e-17;PAIRED=1;PAIREDR=0.995781;PAO=0;PQA=0;PQR=0;PRO=0;QA=835;QR=9001;RO=237;RPL=0;RPP=50.7827;RPPR=517.649;RPR=22;RUN=1;SAF=22;SAP=50.7827;SAR=0;SRF=237;SRP=517.649;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:129:125,3:125:4775:3:111:0,-28.5481,-419.441 0/1:75:67,8:67:2512:8:304:-5.14186,0,-203.708 0/1:56:45,11:45:1714:11:420:-21.2934,0,-137.662 dDocent_Contig_3199 19 . G A 493.401 . AB=0.367647;ABP=13.3567;AC=3;AF=0.5;AN=6;AO=25;CIGAR=1X;DP=68;DPB=68;DPRA=0;EPP=57.2971;EPPR=96.3836;GTI=0;LEN=1;MEANALT=1;MQM=34.64;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=0;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=973;QR=1703;RO=43;RPL=0;RPP=57.2971;RPPR=96.3836;RPR=25;RUN=1;SAF=25;SAP=57.2971;SAR=0;SRF=43;SRP=96.3836;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:24:10,14:10:406:14:533:-33.1064,0,-29.6759 0/1:24:15,9:15:581:9:362:-19.7492,0,-45.403 0/1:20:18,2:18:716:2:78:-0.711659,0,-58.7472 dDocent_Contig_3200 31 . C A 44.5502 . AB=0.1875;ABP=16.582;AC=1;AF=0.166667;AN=6;AO=3;CIGAR=1X;DP=62;DPB=62;DPRA=0.695652;EPP=9.52472;EPPR=131.127;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=119;QR=2372;RO=59;RPL=0;RPP=9.52472;RPPR=131.127;RPR=3;RUN=1;SAF=3;SAP=9.52472;SAR=0;SRF=59;SRP=131.127;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:33:33,0:33:1325:0:0:0,-9.93399,-119.512 0/0:13:13,0:13:520:0:0:0,-3.91339,-47.1455 0/1:16:13,3:13:527:3:119:-6.27891,0,-42.9603 dDocent_Contig_3201 32 . C T 43.3446 . AB=0.111111;ABP=26.6552;AC=2;AF=0.333333;AN=6;AO=2;CIGAR=1X2M3X2M2X3M1X;DP=50;DPB=50;DPRA=1.125;EPP=7.35324;EPPR=68.1545;GTI=0;LEN=1;MEANALT=2;MQM=12;MQMR=60;NS=3;NUMALT=2;ODDS=0;PAIRED=0;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=80;QR=1147;RO=30;RPL=0;RPP=7.35324;RPPR=68.1545;RPR=2;RUN=1;SAF=2;SAP=7.35324;SAR=0;SRF=30;SRP=68.1545;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|1:18:10,6,2:10:365:6,2:235,80:-1.6592,0,-28.2127,-3.11272,-28.5029,-32.4786 0|1:16:6,10,0:6:231:10,0:396,0:-6.09682,0,-16.341,-7.903,-19.3513,-26.9689 0|0:16:14,2,0:14:551:2,0:80,0:0,-2.5377,-47.6531,-4.21442,-48.2552,-49.7778 dDocent_Contig_3202 19 . T G 2247.41 . AB=0.274854;ABP=153.591;AC=3;AF=0.5;AN=6;AO=94;CIGAR=1M1I2M5I2M1X;DP=342;DPB=436;DPRA=0;EPP=207.129;EPPR=539.364;GTI=0;LEN=1;MEANALT=1.33333;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=3691;QR=9662;RO=247;RPL=0;RPP=207.129;RPPR=539.364;RPR=94;RUN=1;SAF=94;SAP=207.129;SAR=0;SRF=247;SRP=539.364;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|1:190:136,54:136:5325:54:2133:-134.975,0,-421.972 0|1:82:57,24:57:2233:24:931:-59.5937,0,-176.667 0|1:70:54,16:54:2104:16:627:-35.6952,0,-168.495 dDocent_Contig_3203 34 . G A 388.47 . AB=0.185841;ABP=99.881;AC=1;AF=0.166667;AN=6;AO=22;CIGAR=1X;DP=203;DPB=203;DPRA=1.41509;EPP=50.7827;EPPR=396.047;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=863;QR=7144;RO=181;RPL=0;RPP=50.7827;RPPR=396.047;RPR=22;RUN=1;SAF=22;SAP=50.7827;SAR=0;SRF=181;SRP=396.047;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:113:92,21:92:3674:21:823:-40.3699,0,-296.664 0/0:37:36,1:36:1401:1:40:0,-7.14243,-122.35 0/0:53:53,0:53:2069:0:0:0,-15.9546,-186.393 dDocent_Contig_3204 73 . T A 145.236 . AB=0.22;ABP=37.059;AC=2;AF=0.333333;AN=6;AO=11;CIGAR=1X;DP=72;DPB=72;DPRA=1.13636;EPP=26.8965;EPPR=135.47;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=3.46945e-18;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=355;QR=2008;RO=61;RPL=11;RPP=26.8965;RPPR=135.47;RPR=0;RUN=1;SAF=11;SAP=26.8965;SAR=0;SRF=61;SRP=135.47;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:22:22,0:22:733:0:0:0,-6.62266,-66.2832 0/1:30:22,8:22:714:8:278:-16.3269,0,-55.5337 0/1:20:17,3:17:561:3:77:-1.16344,0,-44.7841 dDocent_Contig_3205 98 . N A 62.6926 . AB=0;ABP=0;AC=2;AF=1;AN=2;AO=2;CIGAR=1X;DP=2;DPB=2;DPRA=0;EPP=7.35324;EPPR=0;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=0;NS=1;NUMALT=1;ODDS=5.99146;PAIRED=0.5;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=66;QR=0;RO=0;RPL=2;RPP=7.35324;RPPR=0;RPR=0;RUN=1;SAF=2;SAP=7.35324;SAR=0;SRF=0;SRP=0;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 1/1:2:0,2:0:0:2:66:-6.26818,-0.60206,0 ./.:.:.:.:.:.:.:. ./.:.:.:.:.:.:.:. dDocent_Contig_3206 13 . A T 153.157 . AB=0.163636;ABP=57.0602;AC=1;AF=0.166667;AN=6;AO=9;CIGAR=1X;DP=97;DPB=97;DPRA=2.61905;EPP=22.5536;EPPR=194.1;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=367;QR=3487;RO=88;RPL=0;RPP=22.5536;RPPR=194.1;RPR=9;RUN=1;SAF=9;SAP=22.5536;SAR=0;SRF=88;SRP=194.1;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:55:46,9:46:1817:9:367:-16.8386,0,-147.189 0/0:19:19,0:19:770:0:0:0,-5.71957,-69.6192 0/0:23:23,0:23:900:0:0:0,-6.92369,-81.3022 dDocent_Contig_3207 130 . G A 114.374 . AB=0.152;ABP=134.497;AC=2;AF=0.333333;AN=6;AO=19;CIGAR=1X;DP=165;DPB=165;DPRA=1.5625;EPP=44.2683;EPPR=320.045;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=566;QR=4855;RO=146;RPL=0;RPP=44.2683;RPPR=320.045;RPR=19;RUN=1;SAF=0;SAP=44.2683;SAR=19;SRF=0;SRP=320.045;SRR=146;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:94:79,15:79:2674:15:455:-12.948,0,-212.615 0/1:31:27,4:27:867:4:111:-0.934363,0,-68.9934 0/0:40:40,0:40:1314:0:0:0,-12.0412,-118.548 dDocent_Contig_3208 37 . A G 75.0158 . AB=0.185185;ABP=26.2531;AC=2;AF=0.333333;AN=6;AO=5;CIGAR=1X;DP=37;DPB=37;DPRA=1.35;EPP=13.8677;EPPR=72.4974;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=204;QR=1299;RO=32;RPL=0;RPP=13.8677;RPPR=72.4974;RPR=5;RUN=1;SAF=5;SAP=13.8677;SAR=0;SRF=32;SRP=72.4974;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:20:17,3:17:686:3:122:-5.35189,0,-56.047 0/1:7:5,2:5:204:2:82:-5.67247,0,-16.6368 0/0:10:10,0:10:409:0:0:0,-3.0103,-37.1706 dDocent_Contig_3209 15 . G A 223.844 . AB=0.20339;ABP=48.096;AC=2;AF=0.333333;AN=6;AO=13;CIGAR=1X;DP=102;DPB=102;DPRA=0;EPP=31.2394;EPPR=187.585;GTI=0;LEN=1;MEANALT=2;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=520;QR=3424;RO=85;RPL=0;RPP=31.2394;RPPR=187.585;RPR=13;RUN=1;SAF=13;SAP=31.2394;SAR=0;SRF=85;SRP=187.585;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:48:37,10:37:1487:10:398:-21.6191,0,-119.517 0/1:11:8,2:8:322:2:81:-4.28745,0,-25.9553 0/0:43:40,1:40:1615:1:41:0,-8.65382,-141.49 dDocent_Contig_3210 73 . A G 766.48 . AB=0.236025;ABP=100.457;AC=3;AF=0.5;AN=6;AO=38;CIGAR=1X;DP=161;DPB=161;DPRA=0;EPP=85.5263;EPPR=270.101;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=1440;QR=4631;RO=123;RPL=38;RPP=85.5263;RPPR=270.101;RPR=0;RUN=1;SAF=38;SAP=85.5263;SAR=0;SRF=123;SRP=270.101;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:103:81,22:81:3052:22:848:-45.6364,0,-243.84 0/1:24:19,5:19:724:5:192:-10.425,0,-58.2655 0/1:34:23,11:23:855:11:400:-26.1095,0,-67.0386 dDocent_Contig_3212 99 . N C 67.4314 . AB=0;ABP=0;AC=2;AF=1;AN=2;AO=2;CIGAR=9X;DP=2;DPB=2;DPRA=0;EPP=7.35324;EPPR=0;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=0;NS=1;NUMALT=1;ODDS=5.99146;PAIRED=1;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=71;QR=0;RO=0;RPL=2;RPP=7.35324;RPPR=0;RPR=0;RUN=1;SAF=0;SAP=7.35324;SAR=2;SRF=0;SRP=0;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL .:.:.:.:.:.:.:. 1|1:2:0,2:0:0:2:71:-6.74206,-0.60206,0 .:.:.:.:.:.:.:. dDocent_Contig_3213 11 . T C 3469.57 . AB=0.45614;ABP=6.8199;AC=2;AF=0.333333;AN=6;AO=104;CIGAR=1X2M2D8M;DP=228;DPB=204.462;DPRA=0;EPP=228.843;EPPR=146.327;GTI=0;LEN=1;MEANALT=3.33333;MQM=60;MQMR=60;NS=3;NUMALT=3;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=4170;QR=2609;RO=66;RPL=0;RPP=228.843;RPPR=146.327;RPR=104;RUN=1;SAF=104;SAP=228.843;SAR=0;SRF=66;SRP=146.327;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|1:169:48,84,32,5:48:1905:84,32,5:3389,1253,204:-264.918,0,-131.531,-176.353,-53.8031,-323.534,-262.536,-139.986,-316.335,-417.846 1|0:28:3,16,5,3:3:120:16,5,3:620,196,114:-56.2875,-6.2387,-11.3183,-41.0694,0,-49.4531,-47.8427,-6.78323,-41.6103,-56.8278 0|0:31:15,4,11,1:15:584:4,11,1:161,435,41:-31.2746,-22.5194,-69.3016,0,-34.7079,-44.668,-32.4052,-67.1209,-44.5944,-80.0904 dDocent_Contig_3214 28 . G A 2854.49 . AB=0.789474;ABP=85.9834;AC=3;AF=0.5;AN=6;AO=90;CIGAR=1X;DP=114;DPB=114;DPRA=0;EPP=198.443;EPPR=55.1256;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=6.93889e-18;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=3600;QR=906;RO=24;RPL=0;RPP=198.443;RPPR=55.1256;RPR=90;RUN=1;SAF=90;SAP=198.443;SAR=0;SRF=24;SRP=55.1256;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:54:16,38:16:614:38:1532:-121.865,0,-39.3347 0/1:19:2,17:2:77:17:668:-54.729,0,-1.58957 0/1:41:6,35:6:215:35:1400:-113.914,0,-7.34993 dDocent_Contig_3215 12 . T C 946.574 . AB=0.216749;ABP=144.477;AC=2;AF=0.333333;AN=6;AO=49;CIGAR=1X;DP=263;DPB=263;DPRA=0;EPP=109.412;EPPR=467.705;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=0.938776;PAIREDR=0.976636;PAO=0;PQA=0;PQR=0;PRO=0;QA=1956;QR=8557;RO=214;RPL=0;RPP=109.412;RPPR=467.705;RPR=49;RUN=1;SAF=49;SAP=109.412;SAR=0;SRF=214;SRP=467.705;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:154:122,32:122:4911:32:1277:-68.8384,0,-395.508 0/1:49:37,12:37:1430:12:486:-29.3412,0,-114.206 0/0:60:55,5:55:2216:5:193:0,-0.323939,-181.866 dDocent_Contig_3216 7 . C A 894.772 . AB=0.349057;ABP=23.9875;AC=3;AF=0.5;AN=6;AO=37;CIGAR=1X;DP=106;DPB=106;DPRA=0;EPP=83.3548;EPPR=152.842;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=1398;QR=2644;RO=69;RPL=0;RPP=83.3548;RPPR=152.842;RPR=37;RUN=1;SAF=37;SAP=83.3548;SAR=0;SRF=69;SRP=152.842;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:54:29,25:29:1128:25:949:-69.4698,0,-85.5651 0/1:24:15,9:15:581:9:332:-23.0034,0,-45.4082 0/1:28:25,3:25:935:3:117:-2.48154,0,-76.0313 dDocent_Contig_3217 35 . C A 207.414 . AB=0.123529;ABP=212.289;AC=3;AF=0.5;AN=6;AO=21;CIGAR=1X;DP=170;DPB=170;DPRA=0;EPP=48.6112;EPPR=326.56;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=848;QR=5991;RO=149;RPL=0;RPP=48.6112;RPPR=326.56;RPR=21;RUN=1;SAF=21;SAP=48.6112;SAR=0;SRF=149;SRP=326.56;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:96:87,9:87:3496:9:364:-4.2255,0,-285.763 0/1:24:19,5:19:757:5:203:-11.4283,0,-61.2249 0/1:50:43,7:43:1738:7:281:-10.6096,0,-141.582 dDocent_Contig_3218 40 . G A 207.878 . AB=0.25;ABP=26.8965;AC=3;AF=0.5;AN=6;AO=11;CIGAR=1X3M4D1M;DP=44;DPB=39.1111;DPRA=0;EPP=26.8965;EPPR=74.6689;GTI=0;LEN=1;MEANALT=1;MQM=58;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=0;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=428;QR=1257;RO=33;RPL=0;RPP=26.8965;RPPR=74.6689;RPR=11;RUN=1;SAF=11;SAP=26.8965;SAR=0;SRF=33;SRP=74.6689;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|1:22:16,6:16:617:6:235:-14.801,0,-49.2431 0|1:9:6,3:6:233:3:114:-7.92165,0,-18.6296 0|1:13:11,2:11:407:2:79:-3.58424,0,-33.0533 dDocent_Contig_3219 21 . C G 2669 . AB=0.130952;ABP=400.493;AC=0;AF=0;AN=6;AO=44;CIGAR=6M1X1M1X1M1X3M1X6M1X;DP=336;DPB=293.409;DPRA=0;EPP=98.5551;EPPR=396.047;GTI=0;LEN=1;MEANALT=3.66667;MQM=60;MQMR=60;NS=3;NUMALT=3;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=1603;QR=7091;RO=181;RPL=0;RPP=98.5551;RPPR=396.047;RPR=44;RUN=1;SAF=44;SAP=98.5551;SAR=0;SRF=181;SRP=396.047;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|0:193:100,0,67,25:100:3920:0,67,25:0,2586,923:-182.266,-212.369,-534.733,0,-322.375,-302.206,-136.887,-459.249,-246.894,-451.723 0|0:64:32,4,19,8:32:1250:4,19,8:156,740,270:-51.2068,-48.0148,-149.579,0,-89.96,-97.0644,-38.9755,-128.913,-80.9161,-139.328 0|0:79:49,1,17,11:49:1921:1,17,11:38,654,410:-38.9497,-50.5836,-208.264,0,-154.873,-152.872,-20.1435,-175.007,-124.433,-174.812 dDocent_Contig_3220 160 . A T 109.954 . AB=0.145455;ABP=63.0614;AC=1;AF=0.166667;AN=6;AO=9;CIGAR=1X;DP=85;DPB=85;DPRA=3.75;EPP=22.5536;EPPR=127.47;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=59.9079;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=0.934211;PAO=0;PQA=0;PQR=0;PRO=0;QA=352;QR=3021;RO=76;RPL=9;RPP=22.5536;RPPR=127.47;RPR=0;RUN=1;SAF=0;SAP=22.5536;SAR=9;SRF=0;SRP=168.042;SRR=76;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:55:47,8:47:1866:8:319:-12.5182,0,-151.593 0/0:10:10,0:10:395:0:0:0,-3.0103,-35.902 0/0:20:19,1:19:760:1:33:0,-2.72146,-65.4204 dDocent_Contig_3221 20 . C T 281.434 . AB=0.0506329;ABP=141.572;AC=2;AF=0.333334;AN=6;AO=4;CIGAR=1X1M;DP=103;DPB=103;DPRA=1.64583;EPP=11.6962;EPPR=185.414;GTI=0;LEN=1;MEANALT=2;MQM=60;MQMR=60;NS=3;NUMALT=2;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=158;QR=3332;RO=84;RPL=0;RPP=11.6962;RPPR=185.414;RPR=4;RUN=1;SAF=4;SAP=11.6962;SAR=0;SRF=84;SRP=185.414;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|1:63:48,13,2:48:1915:13,2:525,81:-28.8298,0,-153.786,-36.6,-151.02,-193.699 0|1:16:12,2,2:12:474:2,2:76,77:-2.71163,-0.0946634,-38.5054,0,-32.7874,-38.415 0|0:24:24,0,0:24:943:0,0:0,0:0,-7.22472,-85.1763,-7.22472,-85.1763,-85.1763 dDocent_Contig_3222 7 . C T 178.544 . AB=0.203704;ABP=44.1879;AC=2;AF=0.333333;AN=6;AO=11;CIGAR=1X;DP=68;DPB=68;DPRA=1.92857;EPP=26.8965;EPPR=126.784;GTI=0;LEN=1;MEANALT=1;MQM=46;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=0;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=417;QR=2163;RO=57;RPL=0;RPP=26.8965;RPPR=126.784;RPR=11;RUN=1;SAF=11;SAP=26.8965;SAR=0;SRF=57;SRP=126.784;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:31:25,6:25:969:6:228:-11.2142,0,-78.1912 0/0:14:14,0:14:512:0:0:0,-4.21442,-46.4082 0/1:23:18,5:18:682:5:189:-10.1631,0,-54.7881 dDocent_Contig_3223 10 . A C 41.3009 . AB=0.166667;ABP=20.3821;AC=1;AF=0.166667;AN=6;AO=3;CIGAR=1X;DP=42;DPB=42;DPRA=1.5;EPP=9.52472;EPPR=87.6977;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=1.73472e-18;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=122;QR=1542;RO=39;RPL=0;RPP=9.52472;RPPR=87.6977;RPR=3;RUN=1;SAF=3;SAP=9.52472;SAR=0;SRF=39;SRP=87.6977;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:17:17,0:17:673:0:0:0,-5.11751,-60.8995 0/0:7:7,0:7:280:0:0:0,-2.10721,-25.5712 0/1:18:15,3:15:589:3:122:-5.95395,0,-47.9263 dDocent_Contig_3224 11 . T C 676.669 . AB=0.356164;ABP=16.1284;AC=3;AF=0.5;AN=6;AO=26;CIGAR=1X;DP=73;DPB=73;DPRA=0;EPP=59.4686;EPPR=105.07;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=1045;QR=1882;RO=47;RPL=0;RPP=59.4686;RPPR=105.07;RPR=26;RUN=1;SAF=26;SAP=59.4686;SAR=0;SRF=47;SRP=105.07;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:33:14,19:14:559:19:761:-58.8753,0,-40.7134 0/1:12:8,4:8:326:4:162:-11.3546,0,-26.0973 0/1:28:25,3:25:997:3:122:-2.94365,0,-81.5969 dDocent_Contig_3225 11 . T A 3989.24 . AB=0.29703;ABP=75.2924;AC=2;AF=0.333333;AN=6;AO=60;CIGAR=2M1X3M1X;DP=202;DPB=205.857;DPRA=0;EPP=133.299;EPPR=79.0118;GTI=0;LEN=1;MEANALT=2.66667;MQM=60;MQMR=60;NS=3;NUMALT=3;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=2388;QR=1377;RO=35;RPL=0;RPP=133.299;RPPR=79.0118;RPR=60;RUN=1;SAF=60;SAP=133.299;SAR=0;SRF=35;SRP=79.0118;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 1|0:120:19,9,44,48:19:742:9,44,48:315,1747,1919:-235.178,-215.277,-273.564,-97.0782,-132.456,-144.831,-82.8306,-118.209,0,-129.38 1|0:18:2,0,6,10:2:80:0,6,10:0,243,395:-45.344,-45.946,-52.5364,-25.9048,-32.4958,-30.6896,-13.4523,-20.0412,0,-17.0309 0|0:64:14,0,10,39:14:555:0,10,39:0,398,1556:-123.925,-128.14,-173.824,-95.3704,-141.055,-138.044,0,-45.684,-12.914,-33.9438 dDocent_Contig_3227 107 . N T 65.5375 . AB=0;ABP=0;AC=2;AF=1;AN=2;AO=2;CIGAR=1X;DP=2;DPB=2;DPRA=0;EPP=7.35324;EPPR=0;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=0;NS=1;NUMALT=1;ODDS=5.99146;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=69;QR=0;RO=0;RPL=0;RPP=7.35324;RPPR=0;RPR=2;RUN=1;SAF=0;SAP=7.35324;SAR=2;SRF=0;SRP=0;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 1/1:2:0,2:0:0:2:69:-6.55266,-0.60206,0 ./.:.:.:.:.:.:.:. ./.:.:.:.:.:.:.:. dDocent_Contig_3228 8 . G A 879.352 . AB=0.6;ABP=7.78754;AC=3;AF=0.5;AN=6;AO=33;CIGAR=1X;DP=55;DPB=55;DPRA=0;EPP=74.6689;EPPR=50.7827;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=3.46945e-18;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=1211;QR=808;RO=22;RPL=0;RPP=74.6689;RPPR=50.7827;RPR=33;RUN=1;SAF=33;SAP=74.6689;SAR=0;SRF=22;SRP=50.7827;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:21:8,13:8:295:13:479:-37.1252,0,-20.5757 0/1:22:11,11:11:396:11:410:-30.6259,0,-29.3553 0/1:12:3,9:3:117:9:322:-25.7069,0,-7.29802 dDocent_Contig_3229 52 . A T 185.015 . AB=0.16;ABP=78.317;AC=2;AF=0.333333;AN=6;AO=20;CIGAR=1X;DP=256;DPB=256;DPRA=0;EPP=46.4397;EPPR=511.135;GTI=0;LEN=1;MEANALT=1.33333;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=810;QR=9293;RO=234;RPL=20;RPP=46.4397;RPPR=511.135;RPR=0;RUN=1;SAF=20;SAP=46.4397;SAR=0;SRF=234;SRP=511.135;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:181:173,8:173:6869:8:325:0,-24.8674,-588.292 0/1:16:12,4:12:478:4:161:-10.0588,0,-38.5542 0/1:59:49,8:49:1946:8:324:-11.9656,0,-157.771 dDocent_Contig_3232 11 . G A 176.048 . AB=0.180328;ABP=57.1547;AC=3;AF=0.5;AN=6;AO=11;CIGAR=1X;DP=61;DPB=61;DPRA=0;EPP=26.8965;EPPR=111.584;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=448;QR=1994;RO=50;RPL=0;RPP=26.8965;RPPR=111.584;RPR=11;RUN=1;SAF=11;SAP=26.8965;SAR=0;SRF=50;SRP=111.584;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:19:16,3:16:626:3:123:-5.74522,0,-50.953 0/1:21:18,3:18:729:3:122:-5.05086,0,-59.6127 0/1:21:16,5:16:639:5:203:-12.3314,0,-51.5222 dDocent_Contig_3233 8 . A T 433.466 . AB=0.0625;ABP=82.8119;AC=0;AF=0;AN=6;AO=3;CIGAR=1X1M1X;DP=331;DPB=331;DPRA=0.489796;EPP=9.52472;EPPR=577.044;GTI=0;LEN=1;MEANALT=2;MQM=60;MQMR=58.6408;NS=3;NUMALT=3;ODDS=0;PAIRED=1;PAIREDR=0.869718;PAO=0;PQA=0;PQR=0;PRO=0;QA=116;QR=10821;RO=284;RPL=0;RPP=9.52472;RPPR=619.708;RPR=3;RUN=1;SAF=3;SAP=9.52472;SAR=0;SRF=279;SRP=577.044;SRR=5;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|0:185:163,0,22,0:163:6231:0,22,0:0,861,0:-22.111,-71.1789,-578.124,0,-507.335,-500.712,-71.1789,-578.124,-507.335,-578.124 0|0:48:34,3,11,0:34:1285:3,11,0:116,426,0:-24.7584,-25.4653,-129.057,0,-94.9645,-101.182,-34.9934,-129.96,-104.494,-139.489 0|0:98:87,0,4,7:87:3305:0,4,7:0,161,286:0,-26.1896,-293.955,-12.923,-280.685,-279.481,-2.58621,-270.353,-257.083,-268.246 dDocent_Contig_3234 148 . A G 59.316 . AB=0.25;ABP=11.6962;AC=1;AF=0.166667;AN=6;AO=4;CIGAR=1X;DP=64;DPB=64;DPRA=0.666667;EPP=11.6962;EPPR=133.299;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=136;QR=2081;RO=60;RPL=0;RPP=11.6962;RPPR=133.299;RPR=4;RUN=1;SAF=0;SAP=11.6962;SAR=4;SRF=0;SRP=133.299;SRR=60;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:37:37,0:37:1300:0:0:0,-11.1381,-117.28 0/1:16:12,4:12:418:4:136:-7.75551,0,-33.1264 0/0:11:11,0:11:363:0:0:0,-3.31133,-32.9826 dDocent_Contig_3235 7 . C A 36.6402 . AB=0.109375;ABP=87.8334;AC=1;AF=0.166667;AN=6;AO=7;CIGAR=1X2M1X;DP=98;DPB=98;DPRA=3.76471;EPP=18.2106;EPPR=196.271;GTI=0;LEN=1;MEANALT=2;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=0.966292;PAO=0;PQA=0;PQR=0;PRO=0;QA=265;QR=3440;RO=89;RPL=0;RPP=18.2106;RPPR=196.271;RPR=7;RUN=1;SAF=7;SAP=18.2106;SAR=0;SRF=89;SRP=196.271;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|1:64:55,7:55:2134:7:265:-5.1868,0,-173.264 0|0:20:20,0:20:766:0:0:0,-6.0206,-69.2686 0|0:14:14,0:14:540:0:0:0,-4.21442,-48.9455 dDocent_Contig_3236 78 . G A 1007.42 . AB=0.675676;ABP=22.847;AC=3;AF=0.5;AN=6;AO=50;CIGAR=1X;DP=74;DPB=74;DPRA=0;EPP=111.584;EPPR=55.1256;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=1419;QR=823;RO=24;RPL=50;RPP=111.584;RPPR=55.1256;RPR=0;RUN=1;SAF=50;SAP=111.584;SAR=0;SRF=24;SRP=55.1256;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:27:7,20:7:245:20:588:-45.0788,0,-14.2634 0/1:19:8,11:8:265:11:306:-22.0948,0,-18.4529 0/1:28:9,19:9:313:19:525:-39.091,0,-20.0782 dDocent_Contig_3237 8 . T C 1243.62 . AB=0.204545;ABP=69.7337;AC=2;AF=0.333334;AN=6;AO=18;CIGAR=3M1X4M;DP=88;DPB=94.25;DPRA=0;EPP=42.0968;EPPR=44.2683;GTI=0;LEN=1;MEANALT=3.33333;MQM=60;MQMR=60;NS=3;NUMALT=4;ODDS=0;PAIRED=0.944444;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=699;QR=737;RO=19;RPL=0;RPP=42.0968;RPPR=44.2683;RPR=18;RUN=1;SAF=18;SAP=42.0968;SAR=0;SRF=19;SRP=44.2683;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|1:39:10,0,2,14,12:10:389:0,2,14,12:0,78,541,467:-47.8349,-50.8452,-82.8149,-44.4333,-76.4031,-75.801,-6.41186,-38.3811,-31.9693,-34.1667,-12.4632,-44.4333,-38.0214,0,-40.821 0|0:13:3,1,0,7,2:3:114:1,0,7,2:38,0,264,78:-20.7255,-18.5121,-27.5602,-21.6286,-27.8613,-30.9778,0,-6.23001,-9.34586,-7.23865,-15.2144,-21.4475,-24.5642,-2.93079,-23.9621 1|0:36:6,8,0,18,4:6:234:8,0,18,4:314,0,689,154:-61.324,-37.3022,-54.1307,-63.1301,-56.539,-82.3661,-6.59215,0,-25.8274,-20.4089,-50.4856,-43.8942,-69.7216,-13.1842,-68.5175 dDocent_Contig_3238 78 . G T 386.427 . AB=0.351852;ABP=13.3047;AC=3;AF=0.5;AN=6;AO=19;CIGAR=2X;DP=54;DPB=54;DPRA=0;EPP=44.2683;EPPR=79.0118;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=658;QR=1199;RO=35;RPL=19;RPP=44.2683;RPPR=79.0118;RPR=0;RUN=1;SAF=19;SAP=44.2683;SAR=0;SRF=35;SRP=79.0118;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|1:26:11,15:11:378:15:524:-39.6642,0,-26.5249 0|1:14:12,2:12:410:2:65:-1.95887,0,-33.0144 0|1:14:12,2:12:411:2:69:-2.33824,0,-33.105 dDocent_Contig_3239 14 . A T 4262.7 . AB=0.562249;ABP=11.391;AC=3;AF=0.5;AN=6;AO=140;CIGAR=1X4M;DP=249;DPB=249;DPRA=0;EPP=307.016;EPPR=198.443;GTI=0;LEN=1;MEANALT=2.33333;MQM=60;MQMR=60;NS=3;NUMALT=2;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=5569;QR=3571;RO=90;RPL=0;RPP=307.016;RPPR=198.443;RPR=140;RUN=1;SAF=140;SAP=307.016;SAR=0;SRF=90;SRP=198.443;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|1:130:44,14,71:44:1750:14,71:550,2813:-218.26,-186.27,-326.137,0,-98.849,-122.711 0|1:36:20,0,16:20:794:0,16:0,639:-47.0039,-53.0245,-118.387,0,-65.7601,-60.9436 0|1:83:26,3,53:26:1027:3,53:120,2117:-166.53,-164.471,-248.074,0,-74.615,-68.5461 dDocent_Contig_3240 39 . G A 1782.69 . AB=0.209302;ABP=97.6966;AC=3;AF=0.5;AN=6;AO=27;CIGAR=1M1X10M1X6M;DP=129;DPB=123.526;DPRA=0;EPP=61.6401;EPPR=63.8115;GTI=0;LEN=1;MEANALT=5.66667;MQM=60;MQMR=60;NS=3;NUMALT=4;ODDS=2.77556e-17;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=1010;QR=1093;RO=28;RPL=0;RPP=61.6401;RPPR=63.8115;RPR=27;RUN=1;SAF=27;SAP=61.6401;SAR=0;SRF=28;SRP=63.8115;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 1|1:89:14,5,7,37,23:14:549:5,7,37,23:193,280,1442,850:-138.642,-127.017,-170.66,-119.79,-149.099,-162.831,-24.3453,-53.656,-46.4279,-58.3576,-73.3566,-102.665,-95.4377,0,-111.58 0|0:12:6,2,1,2,1:6:240:2,1,2,1:79,29,77,40:-4.70475,0,-19.1893,-4.21921,-17.4934,-23.693,-0.184446,-13.4702,-17.6751,-19.3708,-3.21087,-16.4948,-20.6986,-16.6765,-22.6966 0|1:28:8,1,0,13,3:8:304:1,0,13,3:41,0,519,120:-40.3592,-39.3822,-64.0038,-42.7675,-64.3048,-67.6898,0,-21.5454,-24.9321,-21.0187,-32.8806,-54.4182,-57.8034,-15.0408,-56.9003 dDocent_Contig_3241 106 . N T 66.4848 . AB=0;ABP=0;AC=2;AF=1;AN=2;AO=2;CIGAR=2X;DP=2;DPB=2;DPRA=0;EPP=7.35324;EPPR=0;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=0;NS=1;NUMALT=1;ODDS=5.99146;PAIRED=1;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=70;QR=0;RO=0;RPL=0;RPP=7.35324;RPPR=0;RPR=2;RUN=1;SAF=0;SAP=7.35324;SAR=2;SRF=0;SRP=0;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL .:.:.:.:.:.:.:. 1|1:2:0,2:0:0:2:70:-6.6474,-0.60206,0 .:.:.:.:.:.:.:. dDocent_Contig_3242 15 . A T 71.4436 . AB=0.142857;ABP=49.5419;AC=1;AF=0.166667;AN=6;AO=8;CIGAR=1X;DP=116;DPB=116;DPRA=2.72222;EPP=20.3821;EPPR=237.529;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=313;QR=4070;RO=108;RPL=0;RPP=20.3821;RPPR=237.529;RPR=8;RUN=1;SAF=8;SAP=20.3821;SAR=0;SRF=108;SRP=237.529;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:56:54,2:54:2047:2:77:0,-9.54885,-177.153 0/0:18:18,0:18:678:0:0:0,-5.41854,-61.3484 0/1:42:36,6:36:1345:6:236:-8.96827,0,-108.688 dDocent_Contig_3243 104 . N G 125.761 . AB=0;ABP=0;AC=2;AF=1;AN=2;AO=4;CIGAR=4X;DP=4;DPB=4;DPRA=0;EPP=11.6962;EPPR=0;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=0;NS=1;NUMALT=1;ODDS=7.37776;PAIRED=1;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=136;QR=0;RO=0;RPL=0;RPP=11.6962;RPPR=0;RPR=4;RUN=1;SAF=0;SAP=11.6962;SAR=4;SRF=0;SRP=0;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 1|1:4:0,4:0:0:4:136:-12.5758,-1.20412,0 .:.:.:.:.:.:.:. .:.:.:.:.:.:.:. dDocent_Contig_3244 170 . C G 875.173 . AB=0.411765;ABP=7.60871;AC=4;AF=0.666667;AN=6;AO=28;CIGAR=3M1X;DP=68;DPB=68;DPRA=0;EPP=63.8115;EPPR=46.4397;GTI=0;LEN=1;MEANALT=2.66667;MQM=60;MQMR=60;NS=3;NUMALT=3;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=1121;QR=756;RO=20;RPL=28;RPP=63.8115;RPPR=46.4397;RPR=0;RUN=1;SAF=0;SAP=63.8115;SAR=28;SRF=0;SRP=46.4397;SRR=20;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|1:27:8,7,3,9:8:309:7,3,9:268,117,358:-27.069,-7.49235,-30.7599,-19.8608,-23.2508,-44.3346,0,-3.39119,-15.7616,-22.6698 0|1:25:10,4,2,9:10:370:4,2,9:138,80,364:-27.0254,-18.8418,-47.8816,-23.4439,-42.4945,-53.0948,0,-19.062,-23.6695,-27.5548 1|1:16:2,4,0,10:2:77:4,0,10:158,0,399:-38.9458,-26.547,-31.6627,-39.5478,-32.8668,-45.8684,-6.68976,0,-13.0085,-9.99824 dDocent_Contig_3245 17 . C G 1742.08 . AB=0.0687023;ABP=214.671;AC=0;AF=0;AN=6;AO=9;CIGAR=2X;DP=131;DPB=131;DPRA=0;EPP=22.5536;EPPR=137.642;GTI=0;LEN=1;MEANALT=2;MQM=60;MQMR=60;NS=3;NUMALT=2;ODDS=1.38778e-17;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=336;QR=2427;RO=62;RPL=0;RPP=22.5536;RPPR=137.642;RPR=9;RUN=1;SAF=9;SAP=22.5536;SAR=0;SRF=62;SRP=137.642;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|0:72:40,4,28:40:1580:4,28:147,1123:-80.5084,-80.5387,-209.331,0,-118.012,-121.596 0|0:31:11,2,18:11:412:2,18:69,725:-56.4953,-54.2096,-87.3303,0,-28.1601,-28.3398 0|0:28:11,3,14:11:435:3,14:120,559:-42.7271,-36.1533,-71.0451,0,-25.907,-31.5786 dDocent_Contig_3247 196 . C T 3543.98 . AB=0.658031;ABP=44.8758;AC=3;AF=0.5;AN=6;AO=127;CIGAR=2X;DP=193;DPB=193;DPRA=0;EPP=278.787;EPPR=144.156;GTI=0;LEN=1;MEANALT=1.33333;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=4633;QR=2396;RO=65;RPL=127;RPP=278.787;RPPR=144.156;RPR=0;RUN=1;SAF=0;SAP=278.787;SAR=127;SRF=0;SRP=144.156;SRR=65;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|1:98:43,55:43:1593:55:1983:-149.223,0,-114.144 0|1:38:4,33:4:155:33:1193:-96.4291,0,-3.0379 0|1:57:18,39:18:648:39:1457:-114.256,0,-41.4836 dDocent_Contig_3248 22 . T C 123.51 . AB=0.170213;ABP=47.41;AC=2;AF=0.333333;AN=6;AO=9;CIGAR=1X;DP=69;DPB=69;DPRA=0;EPP=22.5536;EPPR=133.299;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=0.966667;PAO=0;PQA=0;PQR=0;PRO=0;QA=365;QR=2409;RO=60;RPL=0;RPP=22.5536;RPPR=133.299;RPR=9;RUN=1;SAF=9;SAP=22.5536;SAR=0;SRF=60;SRP=133.299;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:30:25,5:25:1007:5:205:-9.80411,0,-81.8939 0/1:17:14,3:14:554:3:120:-6.0698,0,-45.0832 0/0:22:21,1:21:848:1:40:0,-2.62698,-72.6343 dDocent_Contig_3249 27 . G C 100.874 . AB=0.208333;ABP=20.744;AC=1;AF=0.166667;AN=6;AO=5;CIGAR=1X;DP=67;DPB=67;DPRA=1.11628;EPP=13.8677;EPPR=137.642;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=205;QR=2481;RO=62;RPL=0;RPP=13.8677;RPPR=137.642;RPR=5;RUN=1;SAF=5;SAP=13.8677;SAR=0;SRF=62;SRP=137.642;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:24:19,5:19:769:5:205:-11.6103,0,-62.3055 0/0:16:16,0:16:639:0:0:0,-4.81648,-57.8457 0/0:27:27,0:27:1073:0:0:0,-8.12781,-96.8557 dDocent_Contig_3250 52 . A T 4233.96 . AB=0.6;ABP=23.8564;AC=3;AF=0.5;AN=6;AO=144;CIGAR=1X;DP=240;DPB=240;DPRA=0;EPP=315.702;EPPR=211.472;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=5561;QR=3839;RO=96;RPL=144;RPP=315.702;RPPR=211.472;RPR=0;RUN=1;SAF=144;SAP=315.702;SAR=0;SRF=96;SRP=211.472;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:131:48,83:48:1933:83:3225:-250.918,0,-134.73 0/1:40:12,28:12:486:28:1063:-83.9208,0,-32.0504 0/1:69:36,33:36:1420:33:1273:-94.0802,0,-107.281 dDocent_Contig_3251 7 . C T 49.1385 . AB=0.112676;ABP=95.5273;AC=1;AF=0.166667;AN=6;AO=8;CIGAR=1X;DP=106;DPB=106;DPRA=4.05714;EPP=20.3821;EPPR=215.815;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=0.959184;PAO=0;PQA=0;PQR=0;PRO=0;QA=305;QR=3751;RO=98;RPL=0;RPP=20.3821;RPPR=215.815;RPR=8;RUN=1;SAF=8;SAP=20.3821;SAR=0;SRF=98;SRP=215.815;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:71:63,8:63:2407:8:305:-6.43672,0,-195.463 0/0:23:23,0:23:879:0:0:0,-6.92369,-79.4299 0/0:12:12,0:12:465:0:0:0,-3.61236,-42.2018 dDocent_Contig_3252 14 . G A 542.142 . AB=0.25;ABP=55.1256;AC=3;AF=0.5;AN=6;AO=24;CIGAR=1X;DP=96;DPB=96;DPRA=0;EPP=55.1256;EPPR=159.356;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=0;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=969;QR=2801;RO=72;RPL=0;RPP=55.1256;RPPR=159.356;RPR=24;RUN=1;SAF=24;SAP=55.1256;SAR=0;SRF=72;SRP=159.356;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:57:42,15:42:1613:15:607:-37.8085,0,-128.239 0/1:19:12,7:12:474:7:280:-19.8526,0,-37.2848 0/1:20:18,2:18:714:2:82:-1.75908,0,-58.5671 dDocent_Contig_3253 15 . A T 1091.53 . AB=0.47561;ABP=3.434;AC=3;AF=0.5;AN=6;AO=39;CIGAR=1X;DP=82;DPB=82;DPRA=0;EPP=87.6977;EPPR=96.3836;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=59.5349;NS=3;NUMALT=1;ODDS=6.93889e-18;PAIRED=0;PAIREDR=0.27907;PAO=0;PQA=0;PQR=0;PRO=0;QA=1537;QR=1678;RO=43;RPL=0;RPP=87.6977;RPPR=96.3836;RPR=39;RUN=1;SAF=39;SAP=87.6977;SAR=0;SRF=43;SRP=96.3836;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:43:22,21:22:863:21:842:-63.1506,0,-65.0174 0/1:12:5,7:5:201:7:280:-21.9592,0,-14.8585 0/1:27:16,11:16:614:11:415:-29.5661,0,-47.4461 dDocent_Contig_3254 11 . T A 8843.64 . AB=0.676056;ABP=117.701;AC=3;AF=0.5;AN=6;AO=288;CIGAR=1X;DP=426;DPB=426;DPRA=0;EPP=628.394;EPPR=302.673;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=11311;QR=5412;RO=138;RPL=0;RPP=628.394;RPPR=302.673;RPR=288;RUN=1;SAF=288;SAP=628.394;SAR=0;SRF=138;SRP=302.673;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:210:76,134:76:2975:134:5270:-410.994,0,-204.649 0/1:83:33,50:33:1296:50:1964:-151.992,0,-91.9307 0/1:133:29,104:29:1141:104:4077:-326.901,0,-62.9409 dDocent_Contig_3255 48 . G C 44.1681 . AB=0.102564;ABP=110.025;AC=2;AF=0.333333;AN=6;AO=8;CIGAR=1X;DP=95;DPB=95;DPRA=2.29412;EPP=20.3821;EPPR=183.342;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=326;QR=3478;RO=87;RPL=0;RPP=20.3821;RPPR=183.342;RPR=8;RUN=1;SAF=8;SAP=20.3821;SAR=0;SRF=87;SRP=191.928;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:49:45,4:45:1794:4:164:-0.399429,0,-146.925 0/0:17:17,0:17:683:0:0:0,-5.11751,-61.8016 0/1:29:25,4:25:1001:4:162:-6.23709,0,-81.6582 dDocent_Contig_3256 22 . A C 222.481 . AB=0.357143;ABP=7.97367;AC=2;AF=0.333333;AN=6;AO=10;CIGAR=1X;DP=38;DPB=38;DPRA=1.4;EPP=24.725;EPPR=63.8115;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=372;QR=1121;RO=28;RPL=0;RPP=24.725;RPPR=63.8115;RPR=10;RUN=1;SAF=10;SAP=24.725;SAR=0;SRF=28;SRP=63.8115;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:16:12,4:12:487:4:156:-9.59847,0,-39.3652 0/1:12:6,6:6:236:6:216:-16.1725,0,-17.9999 0/0:10:10,0:10:398:0:0:0,-3.0103,-36.1791 dDocent_Contig_3257 9 . G A 88.8337 . AB=0.193548;ABP=28.2974;AC=2;AF=0.333333;AN=6;AO=6;CIGAR=1X;DP=55;DPB=55;DPRA=0.645833;EPP=16.0391;EPPR=109.412;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=1.73472e-18;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=233;QR=1868;RO=49;RPL=0;RPP=16.0391;RPPR=109.412;RPR=6;RUN=1;SAF=6;SAP=16.0391;SAR=0;SRF=49;SRP=109.412;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:17:13,4:13:493:4:155:-9.20793,0,-39.5973 0/1:14:12,2:12:453:2:78:-3.18905,0,-36.9014 0/0:24:24,0:24:922:0:0:0,-7.22472,-83.2972 dDocent_Contig_3258 20 . G T 1840.22 . AB=0.45;ABP=6.05036;AC=3;AF=0.5;AN=6;AO=63;CIGAR=1X;DP=140;DPB=140;DPRA=0;EPP=139.813;EPPR=170.214;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=2564;QR=3062;RO=77;RPL=0;RPP=139.813;RPPR=170.214;RPR=63;RUN=1;SAF=63;SAP=139.813;SAR=0;SRF=77;SRP=170.214;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:82:51,31:51:2026:31:1257:-88.7107,0,-157.84 0/1:29:14,15:14:565:15:615:-46.9562,0,-42.4636 0/1:29:12,17:12:471:17:692:-53.8781,0,-34.0022 dDocent_Contig_3259 30 . C G 596.383 . AB=0.220472;ABP=89.2024;AC=2;AF=0.333333;AN=6;AO=29;CIGAR=1X;DP=152;DPB=152;DPRA=0;EPP=65.983;EPPR=270.101;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=1158;QR=4906;RO=123;RPL=0;RPP=65.983;RPPR=270.101;RPR=29;RUN=1;SAF=29;SAP=65.983;SAR=0;SRF=123;SRP=270.101;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:101:89,12:89:3543:12:479:-13.0561,0,-288.502 0/0:25:24,1:24:957:1:39:0,-3.62919,-82.5341 0/1:26:10,16:10:406:16:640:-50.1051,0,-29.0736 dDocent_Contig_3260 14 . A T 1548.49 . AB=0.336842;ABP=46.9426;AC=3;AF=0.5;AN=6;AO=64;CIGAR=1X;DP=190;DPB=190;DPRA=0;EPP=141.985;EPPR=276.616;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=2407;QR=4957;RO=126;RPL=0;RPP=141.985;RPPR=276.616;RPR=64;RUN=1;SAF=64;SAP=141.985;SAR=0;SRF=126;SRP=276.616;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:71:50,21:50:1994:21:792:-50.2235,0,-158.281 0/1:46:33,13:33:1276:13:454:-27.337,0,-101.255 0/1:73:43,30:43:1687:30:1161:-82.811,0,-130.084 dDocent_Contig_3261 11 . G A 209.121 . AB=0.0772595;ABP=1067.85;AC=2;AF=0.333333;AN=6;AO=54;CIGAR=2M1D1X3M1X1M2X1M2X1M1X;DP=813;DPB=808.938;DPRA=0;EPP=120.27;EPPR=1223.38;GTI=0;LEN=1;MEANALT=25.6667;MQM=59.9259;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=0;PAIREDR=0.709964;PAO=0;PQA=0;PQR=0;PRO=0;QA=2122;QR=21959;RO=562;RPL=0;RPP=120.27;RPPR=1223.38;RPR=54;RUN=1;SAF=54;SAP=120.27;SAR=0;SRF=562;SRP=1223.38;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|1:454:318,35:318:12445:35:1368:-16.7394,0,-1012.72 0|0:127:74,1:74:2889:1:39:0,-19.0702,-256.265 0|1:232:170,18:170:6625:18:715:-7.69556,0,-539.116 dDocent_Contig_3262 87 . C T 1834.18 . AB=0.614035;ABP=15.8868;AC=3;AF=0.5;AN=6;AO=70;CIGAR=1X;DP=114;DPB=114;DPRA=0;EPP=155.013;EPPR=98.5551;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=2470;QR=1521;RO=44;RPL=70;RPP=155.013;RPPR=98.5551;RPR=0;RUN=1;SAF=70;SAP=155.013;SAR=0;SRF=44;SRP=98.5551;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:67:19,48:19:647:48:1691:-132.307,0,-38.3754 0/1:25:9,16:9:315:16:572:-44.288,0,-21.1629 0/1:22:16,6:16:559:6:207:-12.3454,0,-44.0171 dDocent_Contig_3265 21 . T A 6594.5 . AB=0.814961;ABP=221.867;AC=3;AF=0.5;AN=6;AO=207;CIGAR=1X;DP=254;DPB=254;DPRA=0;EPP=452.505;EPPR=105.07;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=1.38778e-17;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=8218;QR=1886;RO=47;RPL=0;RPP=452.505;RPPR=105.07;RPR=207;RUN=1;SAF=207;SAP=452.505;SAR=0;SRF=47;SRP=105.07;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:146:26,120:26:1050:120:4751:-383.561,0,-50.8395 0/1:24:2,22:2:82:22:856:-70.1291,0,-0.554958 0/1:84:19,65:19:754:65:2611:-209.833,0,-42.8943 dDocent_Contig_3266 71 . G A 2832.69 . AB=0.481982;ABP=3.63631;AC=3;AF=0.5;AN=6;AO=107;CIGAR=1X4M;DP=222;DPB=222;DPRA=0;EPP=235.358;EPPR=204.957;GTI=0;LEN=1;MEANALT=2.33333;MQM=60;MQMR=60;NS=3;NUMALT=2;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=3878;QR=2911;RO=93;RPL=107;RPP=235.358;RPPR=204.957;RPR=0;RUN=1;SAF=107;SAP=235.358;SAR=0;SRF=93;SRP=204.957;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|1:98:51,6,40:51:1599:6,40:167,1492:-106.86,-109.002,-235.687,0,-115.325,-116.502 0|1:70:24,5,41:24:750:5,41:147,1478:-113.437,-108.946,-167.681,0,-48.5536,-47.931 0|1:54:18,10,26:18:562:10,26:268,908:-68.496,-52.8296,-94.954,0,-24.0866,-37.3515 dDocent_Contig_3268 18 . G T 1713.42 . AB=0.0390071;ABP=523.548;AC=0;AF=0;AN=6;AO=11;CIGAR=2X1M1X2M;DP=282;DPB=282;DPRA=0;EPP=26.8965;EPPR=372.161;GTI=0;LEN=1;MEANALT=3.66667;MQM=56.3636;MQMR=60;NS=3;NUMALT=4;ODDS=2.77556e-17;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=423;QR=6556;RO=170;RPL=0;RPP=26.8965;RPPR=372.161;RPR=11;RUN=1;SAF=11;SAP=26.8965;SAR=0;SRF=170;SRP=372.161;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|0:122:72,12,0,35,3:72:2783:12,0,35,3:468,0,1313,115:-85.5742,-68.7759,-293.738,-107.248,-297.35,-335.82,0,-190.096,-228.565,-218.029,-97.8115,-287.914,-326.383,-219.128,-325.48 0|0:59:40,2,6,8,3:40:1528:2,6,8,3:79,235,299,120:-12.4287,-17.9678,-142.726,-5.14269,-124.003,-128.698,0,-118.851,-106.027,-122.944,-14.5853,-133.445,-120.621,-115.47,-139.044 0|0:101:58,5,0,32,5:58:2245:5,0,32,5:195,0,1184,188:-78.8619,-80.29,-263.199,-96.3216,-264.704,-280.733,0,-168.378,-184.407,-174.774,-81.197,-249.579,-265.609,-169.284,-264.104 dDocent_Contig_3269 7 . T C 66.9003 . AB=0.2;ABP=18.6449;AC=1;AF=0.166667;AN=6;AO=4;CIGAR=1X;DP=38;DPB=38;DPRA=2.22222;EPP=11.6962;EPPR=76.8404;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=154;QR=1279;RO=34;RPL=0;RPP=11.6962;RPPR=76.8404;RPR=4;RUN=1;SAF=4;SAP=11.6962;SAR=0;SRF=34;SRP=76.8404;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:20:16,4:16:609:4:154:-8.21286,0,-49.128 0/0:5:5,0:5:175:0:0:0,-1.50515,-16.0907 0/0:13:13,0:13:495:0:0:0,-3.91339,-44.8958 dDocent_Contig_3270 112 . G C 8127.24 . AB=0;ABP=0;AC=6;AF=1;AN=6;AO=270;CIGAR=1X;DP=284;DPB=284;DPRA=0;EPP=589.308;EPPR=33.4109;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=9525;QR=500;RO=14;RPL=0;RPP=589.308;RPPR=33.4109;RPR=270;RUN=1;SAF=0;SAP=589.308;SAR=270;SRF=0;SRP=33.4109;SRR=14;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 1/1:178:8,170:8:288:170:6026:-516.19,-27.3159,0 1/1:17:0,17:0:0:17:600:-54.3301,-5.11751,0 1/1:89:6,83:6:212:83:2899:-241.728,-7.36687,0 dDocent_Contig_3271 22 . C T 131.635 . AB=0.181818;ABP=41.702;AC=2;AF=0.333333;AN=6;AO=8;CIGAR=1X;DP=53;DPB=53;DPRA=2.44444;EPP=20.3821;EPPR=100.727;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=314;QR=1787;RO=45;RPL=0;RPP=20.3821;RPPR=100.727;RPR=8;RUN=1;SAF=8;SAP=20.3821;SAR=0;SRF=45;SRP=100.727;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:35:28,7:28:1112:7:276:-14.669,0,-89.8299 0/0:9:9,0:9:357:0:0:0,-2.70927,-32.4925 0/1:9:8,1:8:318:1:38:-1.088,0,-26.2764 dDocent_Contig_3272 7 . C A 180.429 . AB=0.203704;ABP=44.1879;AC=3;AF=0.5;AN=6;AO=11;CIGAR=2X;DP=54;DPB=54;DPRA=0;EPP=26.8965;EPPR=96.3836;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=421;QR=1665;RO=43;RPL=0;RPP=26.8965;RPPR=96.3836;RPR=11;RUN=1;SAF=11;SAP=26.8965;SAR=0;SRF=43;SRP=96.3836;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|1:19:14,5:14:540:5:192:-11.9302,0,-43.2263 0|1:8:7,1:7:272:1:36:-1.19004,0,-22.439 0|1:27:22,5:22:853:5:193:-9.61368,0,-68.9641 dDocent_Contig_3273 15 . T A 24978.5 . AB=0;ABP=0;AC=6;AF=1;AN=6;AO=735;CIGAR=1X;DP=771;DPB=771;DPRA=0;EPP=1599.04;EPPR=81.1833;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=29221;QR=1441;RO=36;RPL=0;RPP=1599.04;RPPR=81.1833;RPR=735;RUN=1;SAF=735;SAP=1599.04;SAR=0;SRF=36;SRP=81.1833;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 1/1:490:24,466:24:964:466:18564:-1582.21,-60.446,0 1/1:68:4,64:4:156:64:2526:-213.068,-6.0536,0 1/1:213:8,205:8:321:205:8131:-702.102,-34.8613,0 dDocent_Contig_3274 63 . T A 64.1159 . AB=0.142857;ABP=41.7866;AC=1;AF=0.166667;AN=6;AO=5;CIGAR=1X;DP=80;DPB=80;DPRA=1.55556;EPP=13.8677;EPPR=165.871;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=0.866667;PAO=0;PQA=0;PQR=0;PRO=0;QA=201;QR=2912;RO=75;RPL=5;RPP=13.8677;RPPR=165.871;RPR=0;RUN=1;SAF=5;SAP=13.8677;SAR=0;SRF=75;SRP=165.871;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:35:30,5:30:1189:5:201:-7.93447,0,-96.7526 0/0:20:20,0:20:754:0:0:0,-6.0206,-68.1733 0/0:25:25,0:25:969:0:0:0,-7.52575,-87.5076 dDocent_Contig_3275 107 . N A 244.476 . AB=0;ABP=0;AC=2;AF=1;AN=2;AO=8;CIGAR=1X;DP=8;DPB=8;DPRA=0;EPP=20.3821;EPPR=0;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=0;NS=1;NUMALT=1;ODDS=10.1503;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=268;QR=0;RO=0;RPL=0;RPP=20.3821;RPPR=0;RPR=8;RUN=1;SAF=0;SAP=20.3821;SAR=8;SRF=0;SRP=0;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 1/1:8:0,8:0:0:8:268:-24.4476,-2.40824,0 ./.:.:.:.:.:.:.:. ./.:.:.:.:.:.:.:. dDocent_Contig_3276 56 . T C 5681.02 . AB=0.875817;ABP=190.708;AC=4;AF=0.666667;AN=6;AO=172;CIGAR=1X;DP=191;DPB=191;DPRA=0;EPP=376.504;EPPR=44.2683;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=6858;QR=755;RO=19;RPL=172;RPP=376.504;RPPR=44.2683;RPR=0;RUN=1;SAF=172;SAP=376.504;SAR=0;SRF=19;SRP=44.2683;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:82:11,71:11:432:71:2835:-230.553,0,-14.5432 1/1:38:0,38:0:0:38:1533:-138.209,-11.4391,0 0/1:71:8,63:8:323:63:2490:-202.864,0,-8.06545 dDocent_Contig_3277 7 . C T 370.699 . AB=0.0714286;ABP=204.027;AC=1;AF=0.166667;AN=6;AO=10;CIGAR=1X3M;DP=170;DPB=170;DPRA=16.5;EPP=24.725;EPPR=276.616;GTI=0;LEN=1;MEANALT=4;MQM=50.3;MQMR=60;NS=3;NUMALT=2;ODDS=0;PAIRED=0.2;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=388;QR=4831;RO=126;RPL=0;RPP=24.725;RPPR=276.616;RPR=10;RUN=1;SAF=10;SAP=24.725;SAR=0;SRF=126;SRP=276.616;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|1:126:89,25,9:89:3396:25,9:953,349:-38.5926,0,-271.091,-37.7279,-250.973,-313.665 0|0:5:5,0,0:5:192:0,0:0,0:0,-1.50515,-17.6498,-1.50515,-17.6498,-17.6498 0|0:39:32,3,1:32:1243:3,1:115,39:0,-1.8558,-103.183,-6.4125,-100.88,-108.337 dDocent_Contig_3278 21 . G A 4931.32 . AB=0.440506;ABP=15.1541;AC=3;AF=0.5;AN=6;AO=174;CIGAR=1X;DP=395;DPB=395;DPRA=0;EPP=380.846;EPPR=480.734;GTI=0;LEN=1;MEANALT=1.33333;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=2.77556e-17;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=6854;QR=8702;RO=220;RPL=0;RPP=380.846;RPPR=480.734;RPR=174;RUN=1;SAF=174;SAP=380.846;SAR=0;SRF=220;SRP=480.734;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:210:121,89:121:4801:89:3511:-252.814,0,-368.774 0/1:98:55,42:55:2146:42:1636:-118.176,0,-164.013 0/1:87:44,43:44:1755:43:1707:-127.665,0,-131.976 dDocent_Contig_3279 9 . G T 37.3763 . AB=0.109589;ABP=99.6557;AC=1;AF=0.166667;AN=6;AO=12;CIGAR=1X;DP=231;DPB=231;DPRA=0;EPP=29.068;EPPR=469.877;GTI=0;LEN=1;MEANALT=1.66667;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=452;QR=8117;RO=215;RPL=0;RPP=29.068;RPPR=469.877;RPR=12;RUN=1;SAF=12;SAP=29.068;SAR=0;SRF=215;SRP=469.877;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:99:95,2:95:3624:2:78:0,-22.1761,-318.891 0/0:59:55,2:55:2047:2:72:0,-10.5576,-177.756 0/1:73:65,8:65:2446:8:302:-5.56146,0,-198.375 dDocent_Contig_3280 12 . A G 265.255 . AB=0.152778;ABP=78.4086;AC=3;AF=0.5;AN=6;AO=11;CIGAR=1X3M;DP=85;DPB=85;DPRA=0;EPP=26.8965;EPPR=128.956;GTI=0;LEN=1;MEANALT=2.5;MQM=60;MQMR=60;NS=3;NUMALT=2;ODDS=0;PAIRED=0.818182;PAIREDR=0.948276;PAO=0;PQA=0;PQR=0;PRO=0;QA=439;QR=2219;RO=58;RPL=0;RPP=26.8965;RPPR=128.956;RPR=11;RUN=1;SAF=11;SAP=26.8965;SAR=0;SRF=58;SRP=128.956;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|1:58:38,9,9:38:1458:9,9:354,360:-18.2185,-0.539756,-117.492,0,-90.5439,-116.956 0|1:13:9,4,0:9:348:4,0:157,0:-10.5954,0,-27.7628,-13.3047,-28.9669,-41.8813 0|1:14:11,1,2:11:413:1,2:40,79:-3.18595,-3.20054,-36.7153,0,-30.5128,-33.2078 dDocent_Contig_3281 17 . T A 2079.61 . AB=0.646018;ABP=23.9371;AC=3;AF=0.5;AN=6;AO=73;CIGAR=1X;DP=113;DPB=113;DPRA=0;EPP=161.528;EPPR=89.8692;GTI=0;LEN=1;MEANALT=1;MQM=45.9863;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=0;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=2824;QR=1551;RO=40;RPL=0;RPP=161.528;RPPR=89.8692;RPR=73;RUN=1;SAF=73;SAP=161.528;SAR=0;SRF=40;SRP=89.8692;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:48:13,35:13:495:35:1354:-103.75,0,-30.4459 0/1:27:12,15:12:470:15:588:-44.3659,0,-34.5231 0/1:38:15,23:15:586:23:882:-65.3681,0,-41.6384 dDocent_Contig_3283 13 . G A 357.639 . AB=0.223684;ABP=53.4113;AC=3;AF=0.5;AN=6;AO=17;CIGAR=1X;DP=76;DPB=76;DPRA=0;EPP=39.9253;EPPR=131.127;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=0;PAIREDR=0.949153;PAO=0;PQA=0;PQR=0;PRO=0;QA=696;QR=2328;RO=59;RPL=0;RPP=39.9253;RPPR=131.127;RPR=17;RUN=1;SAF=17;SAP=39.9253;SAR=0;SRF=59;SRP=131.127;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:44:31,13:31:1254:13:532:-34.9808,0,-99.8823 0/1:8:7,1:7:281:1:41:-1.68633,0,-23.2539 0/1:24:21,3:21:793:3:123:-4.24007,0,-64.4529 dDocent_Contig_3284 9 . G A 3567.45 . AB=0.040201;ABP=368.44;AC=0;AF=0;AN=6;AO=8;CIGAR=1X3M1X;DP=235;DPB=235;DPRA=0;EPP=20.3821;EPPR=231.015;GTI=0;LEN=1;MEANALT=2.5;MQM=60;MQMR=60;NS=3;NUMALT=2;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=316;QR=4095;RO=105;RPL=0;RPP=20.3821;RPPR=231.015;RPR=8;RUN=1;SAF=8;SAP=20.3821;SAR=0;SRF=105;SRP=231.015;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|0:129:46,7,75:46:1804:7,75:276,2989:-232.283,-223.422,-369.67,0,-125.646,-125.778 0|0:36:16,0,19:16:632:0,19:0,752:-57.0879,-61.9044,-113.911,0,-52.0207,-46.3011 0|0:70:43,1,26:43:1659:1,26:40,1042:-72.8966,-82.5459,-218.466,0,-132.921,-128.39 dDocent_Contig_3285 7 . C A 143.955 . AB=0.146341;ABP=92.0936;AC=1;AF=0.166667;AN=6;AO=34;CIGAR=1X;DP=730;DPB=730;DPRA=0;EPP=76.8404;EPPR=1440.54;GTI=0;LEN=1;MEANALT=2.33333;MQM=56.9118;MQMR=56.506;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=0.903904;PAO=0;PQA=0;PQR=0;PRO=0;QA=1290;QR=25687;RO=666;RPL=0;RPP=76.8404;RPPR=1449.21;RPR=34;RUN=1;SAF=34;SAP=76.8404;SAR=0;SRF=665;SRP=1440.54;SRR=1;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:410:382,9:382:14734:9:349:0,-86.3171,-1283.13 0/1:82:66,12:66:2518:12:449:-16.2194,0,-200.838 0/0:238:218,13:218:8435:13:492:0,-25.7909,-708.744 dDocent_Contig_3286 63 . G A 452.063 . AB=0.232323;ABP=64.6231;AC=3;AF=0.5;AN=6;AO=23;CIGAR=1X1M1X;DP=99;DPB=99;DPRA=0;EPP=52.9542;EPPR=168.042;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=883;QR=2898;RO=76;RPL=23;RPP=52.9542;RPPR=168.042;RPR=0;RUN=1;SAF=23;SAP=52.9542;SAR=0;SRF=76;SRP=168.042;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|1:59:42,17:42:1633:17:658:-41.7855,0,-129.455 0|1:19:16,3:16:614:3:117:-5.18901,0,-49.8772 0|1:21:18,3:18:651:3:108:-3.75211,0,-52.5873 dDocent_Contig_3287 12 . T A 1362.09 . AB=0.389313;ABP=16.9508;AC=3;AF=0.5;AN=6;AO=51;CIGAR=1X;DP=131;DPB=131;DPRA=0;EPP=113.755;EPPR=176.728;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=2002;QR=3182;RO=80;RPL=0;RPP=113.755;RPPR=176.728;RPR=51;RUN=1;SAF=51;SAP=113.755;SAR=0;SRF=80;SRP=176.728;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:57:39,18:39:1544:18:708:-46.8885,0,-122.031 0/1:28:9,19:9:366:19:743:-58.7632,0,-24.8757 0/1:46:32,14:32:1272:14:551:-36.0804,0,-100.897 dDocent_Contig_3288 17 . C T 4139.26 . AB=0.864407;ABP=139.114;AC=4;AF=0.666667;AN=6;AO=130;CIGAR=1X;DP=148;DPB=148;DPRA=0;EPP=285.302;EPPR=42.0968;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=0.930769;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=5111;QR=728;RO=18;RPL=0;RPP=285.302;RPPR=42.0968;RPR=130;RUN=1;SAF=130;SAP=285.302;SAR=0;SRF=18;SRP=42.0968;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:79:10,69:10:408:69:2709:-220.149,0,-13.2992 0/1:39:6,33:6:239:33:1282:-103.902,0,-10.1446 1/1:30:2,28:2:81:28:1120:-93.3978,-1.34517,0 dDocent_Contig_3289 161 . A T 32.2721 . AB=0.142857;ABP=26.2761;AC=1;AF=0.166667;AN=6;AO=3;CIGAR=1X;DP=59;DPB=59;DPRA=1.10526;EPP=9.52472;EPPR=124.613;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=122;QR=2156;RO=56;RPL=3;RPP=9.52472;RPPR=124.613;RPR=0;RUN=1;SAF=0;SAP=9.52472;SAR=3;SRF=0;SRP=124.613;SRR=56;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:16:16,0:16:608:0:0:0,-4.81648,-55.0538 0/0:22:22,0:22:838:0:0:0,-6.62266,-75.7367 0/1:21:18,3:18:710:3:122:-5.05086,0,-57.9088 dDocent_Contig_3290 9 . G A 128.197 . AB=0.3;ABP=9.95901;AC=2;AF=0.333334;AN=6;AO=7;CIGAR=3X;DP=73;DPB=73;DPRA=0;EPP=18.2106;EPPR=139.813;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=59.1746;NS=3;NUMALT=2;ODDS=0;PAIRED=1;PAIREDR=0.952381;PAO=0;PQA=0;PQR=0;PRO=0;QA=262;QR=2395;RO=63;RPL=0;RPP=18.2106;RPPR=139.813;RPR=7;RUN=1;SAF=7;SAP=18.2106;SAR=0;SRF=63;SRP=139.813;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|1:30:27,3,0:27:1026:3,0:114,0:-1.60132,0,-83.6186,-9.72913,-84.5216,-93.871 0|0:23:22,0,1:22:830:0,1:0,37:0,-6.62266,-74.1653,-3.22586,-71.1385,-70.8374 0|1:20:14,0,6:14:539:0,6:0,225:-14.5893,-18.8037,-63.0672,0,-44.6412,-42.835 dDocent_Contig_3291 61 . C T 125.098 . AB=0.205882;ABP=28.557;AC=1;AF=0.166667;AN=6;AO=8;CIGAR=1X;DP=295;DPB=295;DPRA=0.367647;EPP=20.3821;EPPR=626.223;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=59.9686;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=0.972125;PAO=0;PQA=0;PQR=0;PRO=0;QA=310;QR=11261;RO=287;RPL=8;RPP=20.3821;RPPR=626.223;RPR=0;RUN=1;SAF=8;SAP=20.3821;SAR=0;SRF=287;SRP=626.223;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:170:170,0:170:6661:0:0:0,-51.1751,-599.21 0/1:34:27,7:27:1064:7:269:-14.3337,0,-85.8209 0/0:91:90,1:90:3536:1:41:0,-23.2992,-314.182 dDocent_Contig_3292 128 . A G 340.263 . AB=0.126984;ABP=79.1497;AC=2;AF=0.333334;AN=6;AO=14;CIGAR=1X4M;DP=330;DPB=330;DPRA=0;EPP=33.4109;EPPR=611.023;GTI=0;LEN=1;MEANALT=3;MQM=60;MQMR=60;NS=3;NUMALT=2;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=496;QR=9700;RO=280;RPL=0;RPP=33.4109;RPPR=611.023;RPR=14;RUN=1;SAF=0;SAP=33.4109;SAR=14;SRF=0;SRP=611.023;SRR=280;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|1:163:138,25,0:138:4759:25,0:869,0:-29.4583,0,-379.409,-71.0005,-386.935,-457.588 0|1:63:50,4,8:50:1737:4,8:139,284:-8.09083,-11.8441,-151.849,0,-129.912,-138.804 0|0:104:92,5,6:92:3204:5,6:176,212:0,-13.3508,-272.423,-10.4058,-256.662,-269.185 dDocent_Contig_3293 37 . G A 5163.17 . AB=0.286022;ABP=187.94;AC=3;AF=0.5;AN=6;AO=133;CIGAR=8M1X7M;DP=465;DPB=315;DPRA=0;EPP=291.816;EPPR=204.957;GTI=0;LEN=1;MEANALT=5;MQM=60;MQMR=60;NS=3;NUMALT=3;ODDS=0;PAIRED=1;PAIREDR=0.924731;PAO=0;PQA=0;PQR=0;PRO=0;QA=5225;QR=3586;RO=93;RPL=0;RPP=291.816;RPPR=204.957;RPR=133;RUN=1;SAF=133;SAP=291.816;SAR=0;SRF=93;SRP=204.957;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|1:253:40,45,78,70:40:1526:45,78,70:1703,2723,2751:-310.439,-182.886,-294.525,-101.072,-86.6641,-202.774,-96.2211,-81.8125,0,-200.337 0|1:106:36,15,23,24:36:1397:15,23,24:576,807,923:-64.938,-28.4918,-138.766,-10.1204,-77.6252,-117.981,0,-67.5101,-49.1366,-107.567 0|1:106:17,19,27,39:17:663:19,27,39:738,962,1551:-146.463,-90.9394,-139.72,-73.1984,-67.0583,-119.568,-23.8771,-17.7361,0,-66.6405 dDocent_Contig_3295 22 . A G 110.951 . AB=0.147541;ABP=68.8308;AC=2;AF=0.333333;AN=6;AO=15;CIGAR=1X1M1X;DP=164;DPB=164;DPRA=0;EPP=35.5824;EPPR=326.56;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=0.932886;PAO=0;PQA=0;PQR=0;PRO=0;QA=591;QR=5837;RO=149;RPL=0;RPP=35.5824;RPPR=326.56;RPR=15;RUN=1;SAF=15;SAP=35.5824;SAR=0;SRF=149;SRP=326.56;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|0:103:97,6:97:3807:6:233:0,-9.66775,-321.339 0|1:22:19,3:19:731:3:119:-4.47273,0,-59.4898 0|1:39:33,6:33:1299:6:239:-10.1448,0,-105.441 dDocent_Contig_3296 132 . C T 100.901 . AB=0.225806;ABP=23.254;AC=2;AF=0.333333;AN=6;AO=10;CIGAR=1X;DP=70;DPB=70;DPRA=0;EPP=24.725;EPPR=133.299;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=357;QR=2170;RO=60;RPL=0;RPP=24.725;RPPR=133.299;RPR=10;RUN=1;SAF=0;SAP=24.725;SAR=10;SRF=0;SRP=133.299;SRR=60;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:39:36,3:36:1311:3:110:0,-1.47916,-108.028 0/1:18:13,5:13:465:5:174:-10.5813,0,-36.7672 0/1:13:11,2:11:394:2:73:-3.01791,0,-31.8856 dDocent_Contig_3297 1 . N G 103.49 . AB=0;ABP=0;AC=4;AF=1;AN=4;AO=3;CIGAR=1X;DP=3;DPB=3;DPRA=0;EPP=9.52472;EPPR=0;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=0;NS=2;NUMALT=1;ODDS=0;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=104;QR=0;RO=0;RPL=0;RPP=9.52472;RPPR=0;RPR=3;RUN=1;SAF=0;SAP=9.52472;SAR=3;SRF=0;SRP=0;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 1/1:2:0,2:0:0:2:70:-6.6474,-0.60206,0 ./.:.:.:.:.:.:.:. 1/1:1:0,1:0:0:1:34:-3.39891,-0.30103,0 dDocent_Contig_3299 36 . A C 245.325 . AB=0.24;ABP=32.3686;AC=3;AF=0.5;AN=6;AO=12;CIGAR=1X;DP=50;DPB=50;DPRA=0;EPP=29.068;EPPR=85.5263;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=478;QR=1507;RO=38;RPL=0;RPP=29.068;RPPR=85.5263;RPR=12;RUN=1;SAF=12;SAP=29.068;SAR=0;SRF=38;SRP=85.5263;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:25:19,6:19:767:6:244:-14.8131,0,-61.8254 0/1:15:10,5:10:385:5:193:-13.2251,0,-30.4838 0/1:10:9,1:9:355:1:41:-1.08427,0,-29.3009 dDocent_Contig_3300 37 . A T 4068.05 . AB=0.858108;ABP=167.866;AC=3;AF=0.5;AN=6;AO=127;CIGAR=1X;DP=148;DPB=148;DPRA=0;EPP=278.787;EPPR=48.6112;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=5069;QR=848;RO=21;RPL=0;RPP=278.787;RPPR=48.6112;RPR=127;RUN=1;SAF=127;SAP=278.787;SAR=0;SRF=21;SRP=48.6112;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:67:10,57:10:401:57:2276:-184.836,0,-16.2811 0/1:30:5,25:5:202:25:990:-80.3644,0,-9.53097 0/1:51:6,45:6:245:45:1803:-147.127,0,-7.07694 dDocent_Contig_3301 107 . N T 132.247 . AB=0;ABP=0;AC=4;AF=1;AN=4;AO=4;CIGAR=1X;DP=4;DPB=4;DPRA=0;EPP=11.6962;EPPR=0;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=0;NS=2;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=136;QR=0;RO=0;RPL=0;RPP=11.6962;RPPR=0;RPR=4;RUN=1;SAF=0;SAP=11.6962;SAR=4;SRF=0;SRP=0;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 1/1:1:0,1:0:0:1:35:-3.49863,-0.30103,0 1/1:3:0,3:0:0:3:101:-9.4236,-0.90309,0 ./.:.:.:.:.:.:.:. dDocent_Contig_3302 38 . T A 48.338 . AB=0.2;ABP=10.8276;AC=1;AF=0.166667;AN=6;AO=2;CIGAR=1X2M1X;DP=54;DPB=54;DPRA=0.322581;EPP=7.35324;EPPR=102.898;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=2;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=80;QR=1838;RO=46;RPL=0;RPP=7.35324;RPPR=102.898;RPR=2;RUN=1;SAF=2;SAP=7.35324;SAR=0;SRF=46;SRP=102.898;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|0:31:27,0,2:27:1094:0,2:0,76:0,-8.12781,-98.3582,-1.90027,-92.1273,-91.5252 0|1:10:8,2,0:8:317:2,0:80,0:-4.58149,0,-25.8841,-6.98973,-26.4862,-33.0771 0|0:13:11,0,2:11:427:0,2:0,81:-3.77234,-7.08367,-42.1524,0,-35.4707,-34.8686 dDocent_Contig_3303 71 . T C 31.5608 . AB=0.1875;ABP=16.582;AC=1;AF=0.166667;AN=6;AO=3;CIGAR=1X;DP=53;DPB=53;DPRA=0.864865;EPP=9.52472;EPPR=111.584;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=0;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=105;QR=1540;RO=50;RPL=3;RPP=9.52472;RPPR=111.584;RPR=0;RUN=1;SAF=3;SAP=9.52472;SAR=0;SRF=50;SRP=111.584;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:18:18,0:18:551:0:0:0,-5.41854,-49.8832 0/0:19:19,0:19:593:0:0:0,-5.71957,-53.6675 0/1:16:13,3:13:396:3:105:-4.97968,0,-31.1184 dDocent_Contig_3304 111 . T C 369.702 . AB=0.27027;ABP=36.9322;AC=2;AF=0.333333;AN=6;AO=20;CIGAR=1X2M1X;DP=85;DPB=85;DPRA=3.36364;EPP=46.4397;EPPR=141.985;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=690;QR=2179;RO=64;RPL=0;RPP=46.4397;RPPR=141.985;RPR=20;RUN=1;SAF=0;SAP=46.4397;SAR=20;SRF=0;SRP=141.985;SRR=64;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|1:58:43,15:43:1453:15:516:-29.3076,0,-113.605 0|0:11:10,0:10:344:0:0:0,-3.0103,-30.989 0|1:16:11,5:11:382:5:174:-11.1855,0,-29.8979 dDocent_Contig_3305 25 . G C 304.945 . AB=0.27451;ABP=25.534;AC=2;AF=0.333333;AN=6;AO=14;CIGAR=1X1M1X;DP=68;DPB=68;DPRA=1.5;EPP=33.4109;EPPR=113.755;GTI=0;LEN=1;MEANALT=1.5;MQM=60;MQMR=60;NS=3;NUMALT=2;ODDS=0;PAIRED=1;PAIREDR=0.960784;PAO=0;PQA=0;PQR=0;PRO=0;QA=535;QR=1990;RO=51;RPL=0;RPP=33.4109;RPPR=113.755;RPR=14;RUN=1;SAF=14;SAP=33.4109;SAR=0;SRF=51;SRP=113.755;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|1:34:25,6,3:25:972:6,3:219,122:-10.3298,0,-78.0419,-7.7785,-69.783,-86.7585 0|1:17:9,8,0:9:346:8,0:316,0:-23.6875,0,-26.3793,-26.3968,-28.7875,-54.7947 0|0:17:17,0,0:17:672:0,0:0,0:0,-5.11751,-60.8109,-5.11751,-60.8109,-60.8109 dDocent_Contig_3306 34 . T C 1300.18 . AB=0.413793;ABP=10.4981;AC=3;AF=0.5;AN=6;AO=48;CIGAR=1X;DP=116;DPB=116;DPRA=0;EPP=107.241;EPPR=150.67;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=1883;QR=2684;RO=68;RPL=0;RPP=107.241;RPPR=150.67;RPR=48;RUN=1;SAF=48;SAP=107.241;SAR=0;SRF=68;SRP=150.67;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:51:25,26:25:982:26:1023:-77.0094,0,-73.3231 0/1:26:15,11:15:603:11:426:-30.8596,0,-46.7812 0/1:39:28,11:28:1099:11:434:-27.6716,0,-87.4517 dDocent_Contig_3307 7 . T C 3893.3 . AB=0.766467;ABP=106.006;AC=3;AF=0.5;AN=6;AO=128;CIGAR=1X;DP=167;DPB=167;DPRA=0;EPP=280.959;EPPR=85.5263;GTI=0;LEN=1;MEANALT=1.33333;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=4935;QR=1458;RO=38;RPL=0;RPP=280.959;RPPR=85.5263;RPR=128;RUN=1;SAF=128;SAP=280.959;SAR=0;SRF=38;SRP=85.5263;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:98:24,73:24:920:73:2815:-224.211,0,-53.7954 0/1:22:3,19:3:112:19:729:-59.3173,0,-3.82383 0/1:47:11,36:11:426:36:1391:-111.322,0,-24.5464 dDocent_Contig_3308 19 . T A 775.362 . AB=0.213483;ABP=129.932;AC=3;AF=0.5;AN=6;AO=38;CIGAR=2X;DP=178;DPB=178;DPRA=0;EPP=85.5263;EPPR=293.988;GTI=0;LEN=1;MEANALT=2.33333;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=1.38778e-17;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=1500;QR=5347;RO=134;RPL=0;RPP=85.5263;RPPR=293.988;RPR=38;RUN=1;SAF=38;SAP=85.5263;SAR=0;SRF=134;SRP=293.988;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|1:84:63,20:63:2519:20:799:-46.8341,0,-201.459 0|1:28:18,9:18:719:9:360:-24.2359,0,-56.506 0|1:66:53,9:53:2109:9:341:-11.989,0,-170.945 dDocent_Contig_3310 16 . G A 51.2275 . AB=0.272727;ABP=7.94546;AC=1;AF=0.166667;AN=6;AO=3;CIGAR=1X;DP=72;DPB=72;DPRA=0.360656;EPP=9.52472;EPPR=152.842;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=8.67362e-19;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=110;QR=2681;RO=69;RPL=0;RPP=9.52472;RPPR=152.842;RPR=3;RUN=1;SAF=3;SAP=9.52472;SAR=0;SRF=69;SRP=152.842;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:47:47,0:47:1840:0:0:0,-14.1484,-165.825 0/0:14:14,0:14:533:0:0:0,-4.21442,-48.3046 0/1:11:8,3:8:308:3:110:-6.94665,0,-24.7687 dDocent_Contig_3311 14 . C A 268.294 . AB=0.292683;ABP=18.3165;AC=2;AF=0.333333;AN=6;AO=12;CIGAR=1X1M1X;DP=53;DPB=53;DPRA=1.70833;EPP=29.068;EPPR=92.0407;GTI=0;LEN=1;MEANALT=1;MQM=57.0833;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=0.916667;PAIREDR=0.97561;PAO=0;PQA=0;PQR=0;PRO=0;QA=474;QR=1632;RO=41;RPL=0;RPP=29.068;RPPR=92.0407;RPR=12;RUN=1;SAF=12;SAP=29.068;SAR=0;SRF=41;SRP=92.0407;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|1:30:23,7:23:924:7:272:-15.1017,0,-74.4354 0|0:12:12,0:12:465:0:0:0,-3.61236,-42.196 0|1:11:6,5:6:243:5:202:-15.2505,0,-18.9368 dDocent_Contig_3312 29 . T C 2666.69 . AB=0.573248;ABP=10.3269;AC=3;AF=0.5;AN=6;AO=90;CIGAR=1X;DP=157;DPB=157;DPRA=0;EPP=198.443;EPPR=148.499;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=3540;QR=2590;RO=67;RPL=0;RPP=198.443;RPPR=148.499;RPR=90;RUN=1;SAF=90;SAP=198.443;SAR=0;SRF=67;SRP=148.499;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:101:45,56:45:1734:56:2208:-168.503,0,-125.901 0/1:18:6,12:6:236:12:463:-36.6025,0,-16.1939 0/1:38:16,22:16:620:22:869:-67.0863,0,-44.6991 dDocent_Contig_3313 9 . G A 38.0564 . AB=0.118644;ABP=77.5396;AC=1;AF=0.166667;AN=6;AO=25;CIGAR=1X;DP=450;DPB=450;DPRA=0;EPP=57.2971;EPPR=925.886;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=0.995294;PAO=0;PQA=0;PQR=0;PRO=0;QA=948;QR=16367;RO=425;RPL=0;RPP=57.2971;RPPR=925.886;RPR=25;RUN=1;SAF=25;SAP=57.2971;SAR=0;SRF=425;SRP=925.886;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:261:251,10:251:9692:10:382:0,-43.8346,-837.201 0/1:59:52,7:52:1986:7:256:-5.62948,0,-161.217 0/0:130:122,8:122:4689:8:310:0,-10.8702,-393.779 dDocent_Contig_3314 7 . T C 679.051 . AB=0.209302;ABP=129.259;AC=3;AF=0.5;AN=6;AO=36;CIGAR=1X;DP=172;DPB=172;DPRA=0;EPP=81.1833;EPPR=298.331;GTI=0;LEN=1;MEANALT=1;MQM=59.6389;MQMR=51.5221;NS=3;NUMALT=1;ODDS=0;PAIRED=0;PAIREDR=0.647059;PAO=0;PQA=0;PQR=0;PRO=0;QA=1380;QR=5239;RO=136;RPL=0;RPP=81.1833;RPPR=298.331;RPR=36;RUN=1;SAF=36;SAP=81.1833;SAR=0;SRF=136;SRP=298.331;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:60:46,14:46:1783:14:536:-30.4786,0,-136.08 0/1:52:41,11:41:1575:11:425:-22.9503,0,-112.044 0/1:60:49,11:49:1881:11:419:-19.999,0,-137.796 dDocent_Contig_3315 10 . A T 274.002 . AB=0.158333;ABP=124.685;AC=2;AF=0.333333;AN=6;AO=19;CIGAR=1X;DP=127;DPB=127;DPRA=8.57143;EPP=44.2683;EPPR=237.529;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=737;QR=4268;RO=108;RPL=0;RPP=44.2683;RPPR=237.529;RPR=19;RUN=1;SAF=19;SAP=44.2683;SAR=0;SRF=108;SRP=237.529;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:89:79,10:79:3132:10:385:-8.21474,0,-255.185 0/0:7:7,0:7:271:0:0:0,-2.10721,-24.7541 0/1:31:22,9:22:865:9:352:-22.7083,0,-68.8337 dDocent_Contig_3316 10 . A T 86.1497 . AB=0.119048;ABP=108.895;AC=1;AF=0.166667;AN=6;AO=16;CIGAR=1X;DP=294;DPB=294;DPRA=0;EPP=37.7539;EPPR=606.68;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=6.93889e-18;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=624;QR=11096;RO=278;RPL=0;RPP=37.7539;RPPR=606.68;RPR=16;RUN=1;SAF=16;SAP=37.7539;SAR=0;SRF=278;SRP=606.68;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:128:125,3:125:4984:3:117:0,-27.6219,-437.536 0/0:82:79,3:79:3149:3:114:0,-14.0535,-272.862 0/1:84:74,10:74:2963:10:393:-10.4389,0,-241.478 dDocent_Contig_3317 17 . T C 3055.28 . AB=0.379791;ABP=39.0325;AC=3;AF=0.5;AN=6;AO=109;CIGAR=1X;DP=287;DPB=287;DPRA=0;EPP=239.701;EPPR=389.532;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=1.38778e-17;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=4408;QR=7072;RO=178;RPL=0;RPP=239.701;RPPR=389.532;RPR=109;RUN=1;SAF=109;SAP=239.701;SAR=0;SRF=178;SRP=389.532;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:176:116,60:116:4624:60:2422:-165.135,0,-363.101 0/1:48:22,26:22:851:26:1052:-80.5189,0,-62.4455 0/1:63:40,23:40:1597:23:934:-65.3965,0,-124.997 dDocent_Contig_3318 62 . A G 79.2402 . AB=0.181818;ABP=32.0291;AC=2;AF=0.333333;AN=6;AO=9;CIGAR=1X;DP=82;DPB=82;DPRA=0;EPP=22.5536;EPPR=159.356;GTI=0;LEN=1;MEANALT=1.33333;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=330;QR=2614;RO=72;RPL=9;RPP=22.5536;RPPR=159.356;RPR=0;RUN=1;SAF=9;SAP=22.5536;SAR=0;SRF=72;SRP=159.356;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:49:45,3:45:1660:3:117:0,-3.89139,-138.764 0/1:11:10,1:10:347:1:35:-0.187299,0,-28.2442 0/1:22:17,5:17:607:5:178:-9.7457,0,-48.3362 dDocent_Contig_3319 23 . A G 1709.87 . AB=0.0532787;ABP=425.949;AC=0;AF=0;AN=6;AO=13;CIGAR=1M1X12M;DP=342;DPB=286.286;DPRA=0;EPP=31.2394;EPPR=372.161;GTI=0;LEN=1;MEANALT=6;MQM=60;MQMR=60;NS=3;NUMALT=5;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=506;QR=6673;RO=170;RPL=0;RPP=31.2394;RPPR=372.161;RPR=13;RUN=1;SAF=13;SAP=31.2394;SAR=0;SRF=170;SRP=372.161;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|0:195:82,25,46,15,7,11:82:3234:25,46,15,7,11:949,1675,597,272,440:-112.101,-58.9857,-317.553,0,-188.291,-252.241,-87.6286,-275.923,-216.933,-349.207,-114.438,-302.732,-243.741,-331.376,-378.424,-100.54,-288.835,-229.844,-317.478,-344.287,-363.323 0|0:49:20,5,13,0,6,4:20:767:5,13,0,6,4:196,475,0,234,157:-32.7761,-22.6773,-84.1254,0,-46.828,-59.0324,-38.7967,-85.6305,-62.9458,-101.749,-19.561,-66.3958,-43.7121,-82.5144,-80.7082,-25.8831,-72.7176,-50.0335,-88.8361,-69.6015,-87.632 0|0:98:68,16,6,3,0,1:68:2672:16,6,3,0,1:633,211,111,0,41:-31.6319,0,-214.968,-34.9352,-202.613,-252.897,-43.0242,-210.706,-245.625,-261.894,-52.102,-219.785,-254.703,-262.797,-271.876,-48.717,-216.401,-251.319,-259.413,-268.492,-268.191 dDocent_Contig_3320 49 . T A 11401.1 . AB=0.052356;ABP=667.89;AC=0;AF=0;AN=6;AO=27;CIGAR=1M1D1M2X;DP=472;DPB=860.6;DPRA=0;EPP=61.6401;EPPR=113.755;GTI=0;LEN=1;MEANALT=4;MQM=60;MQMR=60;NS=3;NUMALT=2;ODDS=5.55112e-17;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=1010;QR=1999;RO=51;RPL=0;RPP=61.6401;RPPR=113.755;RPR=27;RUN=1;SAF=27;SAP=61.6401;SAR=0;SRF=51;SRP=113.755;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|0:283:35,15,231:35:1366:15,231:569,8493:-683.686,-647.574,-755.343,0,-65.6439,-42.7496 0|0:90:6,7,75:6:232:7,75:250,2609:-213.779,-195.207,-212.158,-3.50468,-2.20301,0 0|0:99:10,5,82:10:401:5,82:191,3045:-246.164,-233.504,-265.042,0,-17.403,-8.39031 dDocent_Contig_3321 7 . C A 911.238 . AB=0.3;ABP=48.1769;AC=2;AF=0.333333;AN=6;AO=39;CIGAR=1M3I1X;DP=142;DPB=200.5;DPRA=5.41667;EPP=87.6977;EPPR=224.5;GTI=0;LEN=1;MEANALT=1.5;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=0.980392;PAO=0;PQA=0;PQR=0;PRO=0;QA=1480;QR=3932;RO=102;RPL=0;RPP=87.6977;RPPR=224.5;RPR=39;RUN=1;SAF=39;SAP=87.6977;SAR=0;SRF=102;SRP=224.5;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|1:90:69,21:69:2672:21:791:-44.4235,0,-213.573 0|0:12:12,0:12:460:0:0:0,-3.61236,-41.7494 0|1:40:21,18:21:800:18:689:-50.2232,0,-60.2043 dDocent_Contig_3322 44 . G A 61.0998 . AB=0.0965517;ABP=208.012;AC=1;AF=0.166667;AN=6;AO=18;CIGAR=1X;DP=353;DPB=353;DPRA=1.11927;EPP=42.0968;EPPR=730.454;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=0.970149;PAO=0;PQA=0;PQR=0;PRO=0;QA=705;QR=13290;RO=335;RPL=0;RPP=42.0968;RPPR=730.454;RPR=18;RUN=1;SAF=18;SAP=42.0968;SAR=0;SRF=335;SRP=730.454;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:145:131,14:131:5183:14:566:-7.63286,0,-422.703 0/0:109:109,0:109:4320:0:0:0,-32.8123,-388.771 0/0:99:95,4:95:3787:4:139:0,-16.9596,-327.989 dDocent_Contig_3323 23 . T A 6924.23 . AB=0.185714;ABP=423.407;AC=0;AF=0;AN=6;AO=91;CIGAR=2X2M1X;DP=490;DPB=489.2;DPRA=0;EPP=200.614;EPPR=289.645;GTI=0;LEN=1;MEANALT=4.66667;MQM=60;MQMR=60;NS=3;NUMALT=4;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=3534;QR=5067;RO=132;RPL=0;RPP=200.614;RPPR=289.645;RPR=91;RUN=1;SAF=91;SAP=200.614;SAR=0;SRF=132;SRP=289.645;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|0:291:63,0,56,150,11:63:2423:0,56,150,11:0,2179,5932,417:-469.198,-488.163,-687.073,-309.096,-508.006,-491.149,0,-198.911,-19.8421,-153.757,-453.985,-652.896,-473.829,-164.734,-649.584 0|0:60:18,4,15,17,6:18:699:4,15,17,6:159,588,672,238:-49.8827,-42.2098,-98.4366,-6.94868,-51.2868,-59.863,0,-44.3387,-9.07619,-52.3129,-35.7101,-80.0493,-44.787,-37.8387,-91.3347 0|0:139:51,0,20,60,5:51:1945:0,20,60,5:0,767,2361,189:-178.866,-194.218,-353.757,-131.273,-290.811,-284.79,0,-159.541,-96.593,-141.479,-178.729,-338.268,-275.321,-144.051,-336.763 dDocent_Contig_3324 9 . G A 1410.6 . AB=0.662162;ABP=19.9126;AC=3;AF=0.5;AN=6;AO=49;CIGAR=1X;DP=74;DPB=74;DPRA=0;EPP=109.412;EPPR=57.2971;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=1865;QR=968;RO=25;RPL=0;RPP=109.412;RPPR=57.2971;RPR=49;RUN=1;SAF=49;SAP=109.412;SAR=0;SRF=25;SRP=57.2971;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:32:7,25:7:270:25:951:-76.2688,0,-15.0327 0/1:23:8,15:8:312:15:570:-44.7163,0,-21.5212 0/1:19:10,9:10:386:9:344:-25.5983,0,-29.3775 dDocent_Contig_3325 23 . C T 44.1342 . AB=0.133333;ABP=38.0434;AC=1;AF=0.166667;AN=6;AO=5;CIGAR=1X;DP=57;DPB=57;DPRA=1.875;EPP=13.8677;EPPR=115.927;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=202;QR=2079;RO=52;RPL=0;RPP=13.8677;RPPR=115.927;RPR=5;RUN=1;SAF=5;SAP=13.8677;SAR=0;SRF=52;SRP=115.927;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:30:26,4:26:1048:4:162:-5.93585,0,-85.5805 0/0:12:12,0:12:476:0:0:0,-3.61236,-43.1888 0/0:15:14,1:14:555:1:40:0,-0.519771,-46.2947 dDocent_Contig_3326 1 . N G 74.9833 . AB=0;ABP=0;AC=2;AF=1;AN=2;AO=2;CIGAR=1X;DP=2;DPB=2;DPRA=0;EPP=7.35324;EPPR=0;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=0;NS=1;NUMALT=1;ODDS=5.99146;PAIRED=1;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=79;QR=0;RO=0;RPL=0;RPP=7.35324;RPPR=0;RPR=2;RUN=1;SAF=2;SAP=7.35324;SAR=0;SRF=0;SRP=0;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 1/1:2:0,2:0:0:2:79:-7.49724,-0.60206,0 ./.:.:.:.:.:.:.:. ./.:.:.:.:.:.:.:. dDocent_Contig_3327 16 . G A 4711.59 . AB=0.545763;ABP=8.37641;AC=3;AF=0.5;AN=6;AO=161;CIGAR=1X;DP=295;DPB=295;DPRA=0;EPP=352.617;EPPR=293.988;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=6277;QR=5335;RO=134;RPL=0;RPP=352.617;RPPR=293.988;RPR=161;RUN=1;SAF=161;SAP=352.617;SAR=0;SRF=134;SRP=293.988;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:159:86,73:86:3422:73:2894:-212.707,0,-260.158 0/1:31:11,20:11:435:20:742:-57.7539,0,-30.1714 0/1:105:37,68:37:1478:68:2641:-206.222,0,-101.651 dDocent_Contig_3329 16 . C A 173.887 . AB=0.15;ABP=88.132;AC=1;AF=0.166667;AN=6;AO=12;CIGAR=1X1M1X;DP=126;DPB=126;DPRA=3.47826;EPP=29.068;EPPR=246.215;GTI=0;LEN=1;MEANALT=2;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=475;QR=4433;RO=112;RPL=0;RPP=29.068;RPPR=246.215;RPR=12;RUN=1;SAF=12;SAP=29.068;SAR=0;SRF=112;SRP=246.215;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|1:80:67,12:67:2662:12:475:-18.9116,0,-215.531 0|0:13:13,0:13:506:0:0:0,-3.91339,-45.8853 0|0:33:32,0:32:1265:0:0:0,-9.63296,-113.718 dDocent_Contig_3330 10 . T G 948.628 . AB=0.164671;ABP=329.225;AC=2;AF=0.333333;AN=6;AO=59;CIGAR=1X;DP=460;DPB=460;DPRA=0;EPP=131.127;EPPR=873.771;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=2358;QR=15909;RO=401;RPL=0;RPP=131.127;RPPR=873.771;RPR=59;RUN=1;SAF=59;SAP=131.127;SAR=0;SRF=401;SRP=873.771;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:259:214,45:214:8440:45:1803:-84.5136,0,-681.16 0/1:75:65,10:65:2600:10:401:-13.8721,0,-211.552 0/0:126:122,4:122:4869:4:154:0,-23.6984,-423.87 dDocent_Contig_3332 12 . G C 375.364 . AB=0.056;ABP=217.048;AC=1;AF=0.166667;AN=6;AO=7;CIGAR=3M1X6M;DP=352;DPB=340.9;DPRA=0;EPP=18.2106;EPPR=611.023;GTI=0;LEN=1;MEANALT=4;MQM=60;MQMR=60;NS=3;NUMALT=3;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=286;QR=10926;RO=280;RPL=0;RPP=18.2106;RPPR=611.023;RPR=7;RUN=1;SAF=7;SAP=18.2106;SAR=0;SRF=280;SRP=611.023;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|1:205:167,21,17,0:167:6528:21,17,0:823,658,0:-17.4008,0,-530.378,-13.6219,-482.647,-545.2,-67.6728,-536.7,-550.318,-604.37 0|0:22:14,1,6,0:14:537:1,6,0:40,228,0:-14.4654,-15.3828,-59.157,0,-40.7612,-42.251,-18.6798,-59.4581,-44.0572,-62.7539 0|0:125:99,4,14,7:99:3861:4,14,7:160,503,286:-11.1931,-27.8117,-343.978,0,-304.167,-313.132,-17.3851,-321.582,-293.746,-332.655 dDocent_Contig_3334 13 . T A 4097.9 . AB=0.267717;ABP=241.086;AC=3;AF=0.5;AN=6;AO=136;CIGAR=1M1X5M;DP=508;DPB=508;DPRA=0;EPP=298.331;EPPR=506.792;GTI=0;LEN=1;MEANALT=4.66667;MQM=60;MQMR=60;NS=3;NUMALT=3;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=5368;QR=9067;RO=232;RPL=0;RPP=298.331;RPPR=506.792;RPR=136;RUN=1;SAF=136;SAP=298.331;SAR=0;SRF=232;SRP=506.792;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|1:290:128,9,51,95:128:4996:9,51,95:355,2035,3770:-271.8,-281.125,-689.083,-142.733,-524.193,-538.048,0,-381.458,-243.066,-382.068 0|1:76:45,4,14,12:45:1753:4,14,12:154,562,458:-32.7692,-33.6725,-176.541,0,-131.434,-139.864,-8.75295,-140.178,-106.511,-149.209 0|1:142:59,3,39,29:59:2318:3,39,29:121,1560,1140:-110.743,-118.529,-308.278,0,-180.678,-178.913,-34.7452,-215.421,-96.8924,-216.666 dDocent_Contig_3335 37 . C A 4977.49 . AB=0.815789;ABP=134.67;AC=4;AF=0.666667;AN=6;AO=153;CIGAR=1X;DP=182;DPB=182;DPRA=0;EPP=335.246;EPPR=65.983;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=6114;QR=1170;RO=29;RPL=0;RPP=335.246;RPPR=65.983;RPR=153;RUN=1;SAF=153;SAP=335.246;SAR=0;SRF=29;SRP=65.983;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:103:18,85:18:728:85:3406:-275.577,0,-34.8382 1/1:30:1,29:1:38:29:1161:-100.973,-5.23363,0 0/1:49:10,39:10:404:39:1547:-124.723,0,-21.9678 dDocent_Contig_3337 54 . T A 87.457 . AB=0.285714;ABP=8.59409;AC=1;AF=0.166667;AN=6;AO=5;CIGAR=1X;DP=74;DPB=74;DPRA=0.402439;EPP=13.8677;EPPR=135.974;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=0.942029;PAO=0;PQA=0;PQR=0;PRO=0;QA=198;QR=2689;RO=69;RPL=5;RPP=13.8677;RPPR=135.974;RPR=0;RUN=1;SAF=5;SAP=13.8677;SAR=0;SRF=65;SRP=120.112;SRR=4;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:41:41,0:41:1618:0:0:0,-12.3422,-145.855 0/1:14:10,4:10:404:4:160:-10.5696,0,-32.5056 0/0:19:18,1:18:667:1:38:0,-1.9223,-56.5366 dDocent_Contig_3338 62 . C T 4313.16 . AB=0.798387;ABP=98.9053;AC=4;AF=0.666667;AN=6;AO=136;CIGAR=1X;DP=162;DPB=162;DPRA=0;EPP=298.331;EPPR=59.4686;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=5281;QR=1048;RO=26;RPL=136;RPP=298.331;RPPR=59.4686;RPR=0;RUN=1;SAF=136;SAP=298.331;SAR=0;SRF=26;SRP=59.4686;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:91:19,72:19:766:72:2760:-221.134,0,-41.8679 0/1:33:6,27:6:244:27:1078:-87.3739,0,-12.4048 1/1:38:1,37:1:38:37:1443:-126.331,-7.64187,0 dDocent_Contig_3339 31 . T C 263.915 . AB=0.153285;ABP=146.058;AC=3;AF=0.5;AN=6;AO=21;CIGAR=1X;DP=137;DPB=137;DPRA=0;EPP=48.6112;EPPR=254.901;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=801;QR=4510;RO=116;RPL=0;RPP=48.6112;RPPR=254.901;RPR=21;RUN=1;SAF=21;SAP=48.6112;SAR=0;SRF=116;SRP=254.901;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:76:67,9:67:2619:9:342:-8.24557,0,-212.959 0/1:25:19,6:19:730:6:223:-12.8962,0,-58.4911 0/1:36:30,6:30:1161:6:236:-10.7726,0,-93.934 dDocent_Contig_3340 94 . G T 137.285 . AB=0.162791;ABP=87.9502;AC=2;AF=0.333333;AN=6;AO=16;CIGAR=1X;DP=118;DPB=118;DPRA=0;EPP=37.7539;EPPR=224.5;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=542;QR=3433;RO=102;RPL=16;RPP=37.7539;RPPR=224.5;RPR=0;RUN=1;SAF=16;SAP=37.7539;SAR=0;SRF=102;SRP=224.5;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:52:45,7:45:1547:7:244:-6.6465,0,-123.87 0/1:34:27,7:27:859:7:228:-10.6048,0,-67.3686 0/0:32:30,2:30:1027:2:70:0,-2.98556,-86.0918 dDocent_Contig_3341 36 . C T 78.4481 . AB=0.135593;ABP=71.062;AC=2;AF=0.333333;AN=6;AO=12;CIGAR=1X;DP=113;DPB=113;DPRA=0;EPP=29.068;EPPR=222.329;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=479;QR=4012;RO=101;RPL=0;RPP=29.068;RPPR=222.329;RPR=12;RUN=1;SAF=12;SAP=29.068;SAR=0;SRF=101;SRP=222.329;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:54:50,4:50:2012:4:162:0,-1.28887,-166.296 0/1:18:14,4:14:509:4:162:-9.54821,0,-40.7085 0/1:41:37,4:37:1491:4:155:-1.9818,0,-122.086 dDocent_Contig_3342 61 . A C 967.73 . AB=0.680851;ABP=16.3625;AC=3;AF=0.5;AN=6;AO=32;CIGAR=1X;DP=47;DPB=47;DPRA=0;EPP=72.4974;EPPR=35.5824;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=1282;QR=604;RO=15;RPL=32;RPP=72.4974;RPPR=35.5824;RPR=0;RUN=1;SAF=32;SAP=72.4974;SAR=0;SRF=15;SRP=35.5824;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:17:6,11:6:244:11:429:-33.8414,0,-17.2213 0/1:12:4,8:4:160:8:323:-25.8264,0,-11.1711 0/1:18:5,13:5:200:13:530:-42.6281,0,-12.961 dDocent_Contig_3343 13 . G A 136.036 . AB=0.2;ABP=30.3709;AC=1;AF=0.166667;AN=6;AO=7;CIGAR=1X;DP=76;DPB=76;DPRA=1.70732;EPP=18.2106;EPPR=152.842;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=281;QR=2690;RO=69;RPL=0;RPP=18.2106;RPPR=152.842;RPR=7;RUN=1;SAF=7;SAP=18.2106;SAR=0;SRF=69;SRP=152.842;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:35:28,7:28:1071:7:281:-15.1265,0,-86.1506 0/0:20:20,0:20:789:0:0:0,-6.0206,-71.3335 0/0:21:21,0:21:830:0:0:0,-6.32163,-75.0179 dDocent_Contig_3345 8 . T A 2803.44 . AB=0.39777;ABP=27.4293;AC=3;AF=0.5;AN=6;AO=107;CIGAR=1X;DP=269;DPB=269;DPRA=0;EPP=235.358;EPPR=341.76;GTI=0;LEN=1;MEANALT=1.66667;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=4055;QR=5916;RO=156;RPL=0;RPP=235.358;RPPR=341.76;RPR=107;RUN=1;SAF=107;SAP=235.358;SAR=0;SRF=156;SRP=341.76;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:91:54,35:54:2038:35:1325:-92.3565,0,-156.472 0/1:88:47,41:47:1764:41:1555:-113.733,0,-132.521 0/1:90:55,31:55:2114:31:1175:-79.7778,0,-164.219 dDocent_Contig_3346 98 . N A 341.161 . AB=0;ABP=0;AC=6;AF=1;AN=6;AO=14;CIGAR=1X;DP=14;DPB=14;DPRA=0;EPP=33.4109;EPPR=0;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=0;NS=3;NUMALT=1;ODDS=1.69407e-21;PAIRED=0.428571;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=364;QR=0;RO=0;RPL=14;RPP=33.4109;RPPR=0;RPR=0;RUN=1;SAF=14;SAP=33.4109;SAR=0;SRF=0;SRP=0;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 1/1:6:0,6:0:0:6:177:-16.2199,-1.80618,0 1/1:4:0,4:0:0:4:94:-8.6927,-1.20412,0 1/1:4:0,4:0:0:4:93:-8.60136,-1.20412,0 dDocent_Contig_3347 13 . G C 2861.45 . AB=0.364261;ABP=49.5813;AC=3;AF=0.5;AN=6;AO=106;CIGAR=1X1M1X;DP=291;DPB=291;DPRA=0;EPP=233.186;EPPR=400.39;GTI=0;LEN=1;MEANALT=1.66667;MQM=59.7075;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=0.990566;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=4214;QR=7127;RO=183;RPL=0;RPP=233.186;RPPR=400.39;RPR=106;RUN=1;SAF=106;SAP=233.186;SAR=0;SRF=183;SRP=400.39;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|1:132:76,54:76:2938:54:2149:-154.199,0,-225.15 0|1:60:47,13:47:1824:13:513:-27.3452,0,-146.33 0|1:99:60,39:60:2365:39:1552:-110.124,0,-183.219 dDocent_Contig_3348 11 . C A 547.877 . AB=0.204724;ABP=99.1877;AC=2;AF=0.333333;AN=6;AO=26;CIGAR=1X;DP=163;DPB=163;DPRA=1.76389;EPP=59.4686;EPPR=300.502;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=6.93889e-18;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=1065;QR=5437;RO=137;RPL=0;RPP=59.4686;RPPR=300.502;RPR=26;RUN=1;SAF=26;SAP=59.4686;SAR=0;SRF=137;SRP=300.502;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:93:74,19:74:2971:19:779:-42.4308,0,-239.479 0/1:34:27,7:27:1057:7:286:-15.8798,0,-85.1856 0/0:36:36,0:36:1409:0:0:0,-10.8371,-127.059 dDocent_Contig_3349 9 . C A 237.018 . AB=0;ABP=0;AC=4;AF=1;AN=4;AO=7;CIGAR=1X1M1X;DP=7;DPB=7;DPRA=0;EPP=18.2106;EPPR=0;GTI=0;LEN=1;MEANALT=1;MQM=45;MQMR=0;NS=2;NUMALT=1;ODDS=0;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=257;QR=0;RO=0;RPL=0;RPP=18.2106;RPPR=0;RPR=7;RUN=1;SAF=7;SAP=18.2106;SAR=0;SRF=0;SRP=0;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 1|1:2:0,2:0:0:2:74:-6.93217,-0.60206,0 .:.:.:.:.:.:.:. 1|1:5:0,5:0:0:5:183:-16.4679,-1.50515,0 dDocent_Contig_3350 44 . T C 4228.62 . AB=0.87013;ABP=186.26;AC=3;AF=0.5;AN=6;AO=134;CIGAR=1X;DP=154;DPB=154;DPRA=0;EPP=293.988;EPPR=46.4397;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=5266;QR=698;RO=20;RPL=0;RPP=293.988;RPPR=46.4397;RPR=134;RUN=1;SAF=134;SAP=293.988;SAR=0;SRF=20;SRP=46.4397;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:56:6,50:6:222:50:1972:-160.812,0,-3.47942 0/1:35:7,28:7:247:28:1082:-87.125,0,-12.0343 0/1:63:7,56:7:229:56:2212:-180.291,0,-1.96361 dDocent_Contig_3351 34 . G C 993.452 . AB=0.305344;ABP=46.1248;AC=3;AF=0.5;AN=6;AO=40;CIGAR=1X;DP=131;DPB=131;DPRA=0;EPP=89.8692;EPPR=200.614;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=1592;QR=3567;RO=91;RPL=0;RPP=89.8692;RPPR=200.614;RPR=40;RUN=1;SAF=40;SAP=89.8692;SAR=0;SRF=91;SRP=200.614;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:70:55,15:55:2155:15:587:-32.0851,0,-173.052 0/1:38:22,16:22:867:16:644:-46.8528,0,-66.9041 0/1:23:14,9:14:545:9:361:-25.9302,0,-42.467 dDocent_Contig_3352 14 . C A 5178.85 . AB=0.428571;ABP=14.1779;AC=6;AF=1;AN=6;AO=108;CIGAR=1X3M;DP=252;DPB=252;DPRA=0;EPP=237.529;EPPR=96.3836;GTI=0;LEN=1;MEANALT=2.33333;MQM=60;MQMR=60;NS=3;NUMALT=2;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=4289;QR=1675;RO=43;RPL=0;RPP=237.529;RPPR=96.3836;RPR=108;RUN=1;SAF=108;SAP=237.529;SAR=0;SRF=43;SRP=96.3836;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 1|1:149:26,52,69:26:1014:52,69:2059,2760:-305.636,-144.009,-211.691,-86.1237,0,-148.689 1|1:29:3,17,9:3:107:17,9:668,367:-75.6342,-21.6079,-25.1993,-46.2535,0,-52.2604 1|1:74:14,30,30:14:554:30,30:1174,1162:-142.137,-49.8268,-86.3939,-50.9231,0,-87.489 dDocent_Contig_3353 121 . C T 1290.59 . AB=0.436508;ABP=7.42218;AC=3;AF=0.5;AN=6;AO=55;CIGAR=1X3M;DP=126;DPB=126;DPRA=0;EPP=122.441;EPPR=137.642;GTI=0;LEN=1;MEANALT=2;MQM=60;MQMR=60;NS=3;NUMALT=2;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=1880;QR=2107;RO=62;RPL=0;RPP=122.441;RPPR=137.642;RPR=55;RUN=1;SAF=0;SAP=122.441;SAR=55;SRF=0;SRP=137.642;SRR=62;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|1:73:29,7,35:29:983:7,35:244,1213:-89.8616,-78.7468,-156.345,0,-59.8549,-69.1649 0|1:22:12,0,10:12:412:0,10:0,344:-24.6699,-28.2823,-61.7366,0,-33.7979,-30.7876 0|1:31:21,0,10:21:712:0,10:0,323:-20.0506,-26.3722,-84.1184,0,-58.0742,-55.0639 dDocent_Contig_3354 28 . A G 1912.53 . AB=0;ABP=0;AC=6;AF=1;AN=6;AO=53;CIGAR=1X;DP=53;DPB=53;DPRA=0;EPP=118.098;EPPR=0;GTI=0;LEN=1;MEANALT=1;MQM=59.6226;MQMR=0;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=2110;QR=0;RO=0;RPL=0;RPP=118.098;RPPR=0;RPR=53;RUN=1;SAF=53;SAP=118.098;SAR=0;SRF=0;SRP=0;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 1/1:29:0,29:0:0:29:1155:-104.232,-8.72987,0 1/1:11:0,11:0:0:11:444:-40.3151,-3.31133,0 1/1:13:0,13:0:0:13:511:-46.2281,-3.91339,0 dDocent_Contig_3356 34 . T C 78.2891 . AB=0.107143;ABP=40.5458;AC=0;AF=0;AN=6;AO=3;CIGAR=5M1X8M;DP=61;DPB=64.4286;DPRA=1.86667;EPP=9.52472;EPPR=105.07;GTI=0;LEN=1;MEANALT=2;MQM=60;MQMR=60;NS=3;NUMALT=2;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=119;QR=1810;RO=47;RPL=0;RPP=9.52472;RPPR=105.07;RPR=3;RUN=1;SAF=3;SAP=9.52472;SAR=0;SRF=47;SRP=105.07;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|0:28:20,5,3:20:766:5,3:151,119:-5.99849,0,-61.3399,-2.18802,-53.0476,-64.2064 0|0:15:13,0,0:13:488:0,0:0,0:0,-3.91339,-44.1047,-3.91339,-44.1047,-44.1047 0|0:18:14,3,0:14:556:3,0:114,0:-5.35228,0,-45.1574,-9.5667,-46.0604,-55.4104 dDocent_Contig_3357 80 . T C 4068.74 . AB=0.420792;ABP=25.026;AC=3;AF=0.5;AN=6;AO=170;CIGAR=1X;DP=404;DPB=404;DPRA=0;EPP=372.161;EPPR=508.963;GTI=0;LEN=1;MEANALT=1.33333;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=2.77556e-17;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=5925;QR=8245;RO=233;RPL=170;RPP=372.161;RPPR=508.963;RPR=0;RUN=1;SAF=170;SAP=372.161;SAR=0;SRF=233;SRP=508.963;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:217:125,91:125:4416:91:3197:-222.572,0,-332.233 0/1:61:40,21:40:1413:21:726:-47.2955,0,-109.105 0/1:126:68,58:68:2416:58:2002:-142.53,0,-179.766 dDocent_Contig_3358 42 . A G 868.872 . AB=0.191667;ABP=201.193;AC=1;AF=0.166667;AN=6;AO=48;CIGAR=1X;DP=999;DPB=999;DPRA=0;EPP=98.736;EPPR=82.857;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=0.958333;PAIREDR=0.164038;PAO=0;PQA=0;PQR=0;PRO=0;QA=1831;QR=37169;RO=951;RPL=0;RPP=107.241;RPPR=2068.08;RPR=48;RUN=1;SAF=47;SAP=98.736;SAR=1;SRF=569;SRP=82.857;SRR=382;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:477:476,1:476:18624:1:37:0,-139.893,-1671.06 0/1:240:194,46:194:7633:46:1786:-88.7111,0,-614.379 0/0:282:281,1:281:10912:1:8:0,-84.0905,-980.701 dDocent_Contig_3359 24 . C A 135.619 . AB=0.152778;ABP=78.4086;AC=1;AF=0.166667;AN=6;AO=13;CIGAR=1X;DP=207;DPB=207;DPRA=1.70213;EPP=31.2394;EPPR=424.276;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=0.994845;PAO=0;PQA=0;PQR=0;PRO=0;QA=485;QR=7734;RO=194;RPL=0;RPP=31.2394;RPPR=424.276;RPR=13;RUN=1;SAF=13;SAP=31.2394;SAR=0;SRF=194;SRP=424.276;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:88:86,2:86:3468:2:77:0,-19.1824,-304.839 0/0:47:47,0:47:1854:0:0:0,-14.1484,-167.07 0/1:72:61,11:61:2412:11:408:-15.3858,0,-195.559 dDocent_Contig_3360 19 . C T 37.5469 . AB=0.285714;ABP=5.80219;AC=1;AF=0.166667;AN=6;AO=2;CIGAR=1X;DP=47;DPB=47;DPRA=0.35;EPP=7.35324;EPPR=100.727;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=81;QR=1798;RO=45;RPL=0;RPP=7.35324;RPPR=100.727;RPR=2;RUN=1;SAF=2;SAP=7.35324;SAR=0;SRF=45;SRP=100.727;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:28:28,0:28:1123:0:0:0,-8.42884,-101.351 0/0:12:12,0:12:471:0:0:0,-3.61236,-42.7383 0/1:7:5,2:5:204:2:81:-5.57852,0,-16.6368 dDocent_Contig_3361 7 . C T 2065.14 . AB=0.430233;ABP=10.2822;AC=3;AF=0.5;AN=6;AO=74;CIGAR=1X2M;DP=172;DPB=172;DPRA=0;EPP=163.699;EPPR=163.699;GTI=0;LEN=1;MEANALT=1.66667;MQM=60;MQMR=60;NS=3;NUMALT=2;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=2849;QR=2805;RO=74;RPL=0;RPP=163.699;RPPR=163.699;RPR=74;RUN=1;SAF=74;SAP=163.699;SAR=0;SRF=74;SRP=163.699;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|1:101:37,21,43:37:1386:21,43:802,1648:-124.118,-69.4536,-176.636,0,-47.6977,-100.559 0|1:22:11,0,11:11:424:0,11:0,424:-31.8915,-35.2028,-70.0205,0,-35.2028,-31.8915 0|1:49:26,3,20:26:995:3,20:115,777:-56.0271,-54.4158,-135.162,0,-72.2135,-75.6317 dDocent_Contig_3362 8 . A T 2665.2 . AB=0.0443787;ABP=612.462;AC=0;AF=0;AN=6;AO=15;CIGAR=2X3M;DP=338;DPB=338;DPRA=0;EPP=35.5824;EPPR=356.96;GTI=0;LEN=1;MEANALT=4.66667;MQM=60;MQMR=60;NS=3;NUMALT=4;ODDS=0;PAIRED=0;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=571;QR=6333;RO=163;RPL=0;RPP=35.5824;RPPR=356.96;RPR=15;RUN=1;SAF=15;SAP=35.5824;SAR=0;SRF=163;SRP=356.96;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|0:150:64,0,5,53,24:64:2471:0,5,53,24:0,192,2032,919:-147.511,-166.777,-369.702,-151.016,-353.941,-352.436,0,-202.925,-187.164,-186.971,-91.3581,-294.283,-278.522,-127.507,-287.059 0|0:113:47,6,7,36,13:47:1824:6,7,36,13:231,263,1381,504:-99.1368,-94.3189,-242.38,-91.7398,-222.64,-239.499,0,-130.901,-128.322,-139.03,-71.8761,-202.777,-200.198,-108.459,-217.83 0|0:75:52,0,3,13,5:52:2038:0,3,13,5:0,116,500,193:-25.3945,-41.0481,-208.644,-31.5198,-199.116,-198.213,0,-167.595,-158.067,-163.682,-25.1977,-192.794,-183.266,-151.745,-191.289 dDocent_Contig_3363 10 . G A 707.856 . AB=0.254098;ABP=67.0865;AC=3;AF=0.5;AN=6;AO=31;CIGAR=1X;DP=122;DPB=122;DPRA=0;EPP=70.3259;EPPR=200.614;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=1244;QR=3632;RO=91;RPL=0;RPP=70.3259;RPPR=200.614;RPR=31;RUN=1;SAF=31;SAP=70.3259;SAR=0;SRF=91;SRP=200.614;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:56:45,11:45:1799:11:438:-22.9171,0,-145.265 0/1:30:21,9:21:831:9:369:-24.5446,0,-66.0708 0/1:36:25,11:25:1002:11:437:-28.8469,0,-79.639 dDocent_Contig_3364 161 . C G 72.2319 . AB=0.185185;ABP=26.2531;AC=2;AF=0.333333;AN=6;AO=6;CIGAR=1X;DP=104;DPB=104;DPRA=0;EPP=16.0391;EPPR=215.815;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=242;QR=3806;RO=98;RPL=6;RPP=16.0391;RPPR=215.815;RPR=0;RUN=1;SAF=0;SAP=16.0391;SAR=6;SRF=0;SRP=215.815;SRR=98;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:77:76,1:76:2968:1:41:0,-19.0847,-263.129 0/1:13:11,2:11:394:2:79:-3.58424,0,-31.8755 0/1:14:11,3:11:444:3:122:-7.15807,0,-36.1014 dDocent_Contig_3365 30 . C A 1260.83 . AB=0.176617;ABP=368.163;AC=2;AF=0.333333;AN=6;AO=84;CIGAR=1X;DP=557;DPB=557;DPRA=0;EPP=185.414;EPPR=1030.12;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=2.77556e-17;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=3282;QR=18730;RO=473;RPL=0;RPP=185.414;RPPR=1030.12;RPR=84;RUN=1;SAF=84;SAP=185.414;SAR=0;SRF=473;SRP=1030.12;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:310:259,51:259:10209:51:1981:-85.1636,0,-824.842 0/1:92:72,20:72:2845:20:798:-44.4418,0,-228.478 0/0:155:142,13:142:5676:13:503:0,-1.05037,-465.042 dDocent_Contig_3366 128 . G A 1428.38 . AB=0.682927;ABP=26.8435;AC=3;AF=0.5;AN=6;AO=56;CIGAR=1X;DP=82;DPB=82;DPRA=0;EPP=124.613;EPPR=57.2971;GTI=0;LEN=1;MEANALT=1.33333;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=1910;QR=853;RO=25;RPL=0;RPP=124.613;RPPR=57.2971;RPR=56;RUN=1;SAF=0;SAP=124.613;SAR=56;SRF=0;SRP=57.2971;SRR=25;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:22:4,18:4:139:18:608:-48.4134,0,-6.23003 0/1:34:9,24:9:306:24:820:-64.0676,0,-17.8125 0/1:26:12,14:12:408:14:482:-35.8796,0,-29.2199 dDocent_Contig_3367 13 . T C 56.1001 . AB=0.122449;ABP=63.6786;AC=1;AF=0.166667;AN=6;AO=22;CIGAR=1X;DP=478;DPB=478;DPRA=0;EPP=50.7827;EPPR=982.363;GTI=0;LEN=1;MEANALT=1.33333;MQM=50.5;MQMR=38.7868;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=0.795604;PAO=0;PQA=0;PQR=0;PRO=0;QA=897;QR=18221;RO=455;RPL=0;RPP=50.7827;RPPR=991.03;RPR=22;RUN=1;SAF=22;SAP=50.7827;SAR=0;SRF=454;SRP=982.363;SRR=1;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:261:257,3:257:10285:3:122:0,-67.4086,-745.522 0/1:49:43,6:43:1700:6:245:-7.43391,0,-104.48 0/0:168:155,13:155:6236:13:530:0,-2.99936,-381.077 dDocent_Contig_3369 15 . T A 110.98 . AB=0.119565;ABP=118.665;AC=1;AF=0.166667;AN=6;AO=13;CIGAR=1X;DP=178;DPB=178;DPRA=6.34615;EPP=31.2394;EPPR=361.303;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=54.5636;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=0.89697;PAO=0;PQA=0;PQR=0;PRO=0;QA=525;QR=6606;RO=165;RPL=0;RPP=31.2394;RPPR=361.303;RPR=13;RUN=1;SAF=13;SAP=31.2394;SAR=0;SRF=165;SRP=361.303;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:92:81,11:81:3240:11:444:-12.6208,0,-253.668 0/0:13:13,0:13:519:0:0:0,-3.91339,-44.403 0/0:73:71,2:71:2847:2:81:0,-14.2895,-220.069 dDocent_Contig_3370 54 . G A 280.135 . AB=0.0909091;ABP=66.97;AC=0;AF=0;AN=6;AO=4;CIGAR=1X1M1X2M2X1M1X2M1X;DP=46;DPB=46;DPRA=11;EPP=11.6962;EPPR=61.6401;GTI=0;LEN=1;MEANALT=3;MQM=28.5;MQMR=60;NS=3;NUMALT=2;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=151;QR=998;RO=27;RPL=4;RPP=11.6962;RPPR=61.6401;RPR=0;RUN=1;SAF=4;SAP=11.6962;SAR=0;SRF=27;SRP=61.6401;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|0:18:11,1,5:11:414:1,5:33,181:-11.5477,-13.314,-46.9524,0,-32.4792,-32.5269 0|0:2:2,0,0:2:78:0,0:0,0:0,-0.60206,-7.4033,-0.60206,-7.4033,-7.4033 0|0:26:14,3,8:14:506:3,8:118,295:-19.988,-17.208,-57.614,0,-34.3828,-38.9726 dDocent_Contig_3371 14 . T C 3826.34 . AB=0.81;ABP=86.4817;AC=4;AF=0.666667;AN=6;AO=116;CIGAR=1X;DP=135;DPB=135;DPRA=0;EPP=254.901;EPPR=44.2683;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=0.991379;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=4617;QR=716;RO=19;RPL=0;RPP=254.901;RPPR=44.2683;RPR=116;RUN=1;SAF=116;SAP=254.901;SAR=0;SRF=19;SRP=44.2683;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:47:5,42:5:193:42:1690:-138.174,0,-3.59113 0/1:53:14,39:14:523:39:1515:-120.648,0,-31.4465 1/1:35:0,35:0:0:35:1412:-127.331,-10.5361,0 dDocent_Contig_3372 40 . T A 68.4609 . AB=0.172414;ABP=30.0414;AC=1;AF=0.166667;AN=6;AO=6;CIGAR=1X;DP=64;DPB=64;DPRA=1.63333;EPP=16.0391;EPPR=128.956;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=223;QR=2226;RO=58;RPL=0;RPP=16.0391;RPPR=128.956;RPR=6;RUN=1;SAF=6;SAP=16.0391;SAR=0;SRF=58;SRP=128.956;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:29:24,5:24:910:5:186:-8.36896,0,-73.4817 0/0:20:19,1:19:744:1:37:0,-2.32277,-63.5888 0/0:15:15,0:15:572:0:0:0,-4.51545,-51.82 dDocent_Contig_3373 36 . A T 35.2647 . AB=0.166667;ABP=20.3821;AC=1;AF=0.166667;AN=6;AO=6;CIGAR=1X;DP=121;DPB=121;DPRA=0.491803;EPP=16.0391;EPPR=250.558;GTI=0;LEN=1;MEANALT=1.5;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=3.46945e-18;PAIRED=0;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=236;QR=4401;RO=114;RPL=0;RPP=16.0391;RPPR=250.558;RPR=6;RUN=1;SAF=6;SAP=16.0391;SAR=0;SRF=114;SRP=250.558;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:61:61,0:61:2410:0:0:0,-18.3628,-217.05 0/1:18:14,3:14:541:3:114:-5.35017,0,-43.8 0/0:42:39,3:39:1450:3:122:0,-1.27077,-119.36 dDocent_Contig_3374 7 . C T 103.168 . AB=0.12766;ABP=116.204;AC=2;AF=0.333333;AN=6;AO=14;CIGAR=1X;DP=128;DPB=128;DPRA=0;EPP=33.4109;EPPR=250.558;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=538;QR=4360;RO=114;RPL=0;RPP=33.4109;RPPR=250.558;RPR=14;RUN=1;SAF=14;SAP=33.4109;SAR=0;SRF=114;SRP=250.558;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:72:64,8:64:2465:8:304:-6.04508,0,-200.376 0/1:22:18,4:18:667:4:156:-7.79463,0,-53.7291 0/0:34:32,2:32:1228:2:78:0,-2.83155,-103.411 dDocent_Contig_3375 118 . A G 47.8027 . AB=0.123711;ABP=122.307;AC=1;AF=0.166667;AN=6;AO=20;CIGAR=1X;DP=249;DPB=249;DPRA=0;EPP=46.4397;EPPR=500.277;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=663;QR=7738;RO=229;RPL=0;RPP=46.4397;RPPR=500.277;RPR=20;RUN=1;SAF=0;SAP=46.4397;SAR=20;SRF=0;SRP=500.277;SRR=229;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:97:85,12:85:2866:12:391:-6.30314,0,-228.983 0/0:82:77,5:77:2646:5:167:0,-9.3257,-223.039 0/0:70:67,3:67:2226:3:105:0,-11.2759,-190.809 dDocent_Contig_3377 23 . A T 840.13 . AB=0.455882;ABP=4.1599;AC=3;AF=0.5;AN=6;AO=31;CIGAR=1X;DP=68;DPB=68;DPRA=0;EPP=70.3259;EPPR=83.3548;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=1211;QR=1452;RO=37;RPL=0;RPP=70.3259;RPPR=83.3548;RPR=31;RUN=1;SAF=31;SAP=70.3259;SAR=0;SRF=37;SRP=83.3548;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:40:25,15:25:982:15:594:-41.7557,0,-76.6404 0/1:9:4,5:4:153:5:170:-12.9142,0,-11.4307 0/1:19:8,11:8:317:11:447:-34.8659,0,-23.1754 dDocent_Contig_3378 9 . C T 77.7422 . AB=0.128205;ABP=96.662;AC=2;AF=0.333333;AN=6;AO=10;CIGAR=1X;DP=119;DPB=119;DPRA=0.95122;EPP=24.725;EPPR=239.701;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=378;QR=4186;RO=109;RPL=0;RPP=24.725;RPPR=239.701;RPR=10;RUN=1;SAF=10;SAP=24.725;SAR=0;SRF=109;SRP=239.701;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:51:44,7:44:1697:7:261:-8.49128,0,-137.638 0/0:41:41,0:41:1566:0:0:0,-12.3422,-141.211 0/1:27:24,3:24:923:3:117:-2.78257,0,-75.2581 dDocent_Contig_3379 28 . A C 669.011 . AB=0.28866;ABP=40.6417;AC=3;AF=0.5;AN=6;AO=28;CIGAR=1X;DP=97;DPB=97;DPRA=0;EPP=63.8115;EPPR=152.842;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=1117;QR=2742;RO=69;RPL=0;RPP=63.8115;RPPR=152.842;RPR=28;RUN=1;SAF=28;SAP=63.8115;SAR=0;SRF=69;SRP=152.842;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:52:34,18:34:1359:18:722:-49.6523,0,-106.914 0/1:15:13,2:13:513:2:81:-3.17028,0,-42.0016 0/1:30:22,8:22:870:8:314:-19.5917,0,-69.5777 dDocent_Contig_3380 9 . G C 7120.57 . AB=0.833333;ABP=263.587;AC=4;AF=0.666667;AN=6;AO=225;CIGAR=1X3M;DP=270;DPB=270;DPRA=0;EPP=491.592;EPPR=72.4974;GTI=0;LEN=1;MEANALT=2;MQM=60;MQMR=60;NS=3;NUMALT=2;ODDS=1.38778e-17;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=8619;QR=1243;RO=32;RPL=0;RPP=491.592;RPPR=72.4974;RPR=225;RUN=1;SAF=225;SAP=491.592;SAR=0;SRF=32;SRP=72.4974;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|1:131:13,3,115:13:511:3,115:120,4405:-357.58,-351.608,-392.735,0,-32.1373,-7.4054 0|1:73:17,2,54:17:657:2,54:75,2054:-163.349,-162.323,-215.682,0,-47.8273,-37.714 1|1:66:2,8,56:2:75:8,56:316,2160:-196.651,-171.249,-174.983,-19.8801,0,-9.16121 dDocent_Contig_3381 8 . G A 3957.36 . AB=0.861702;ABP=109.828;AC=4;AF=0.666667;AN=6;AO=125;CIGAR=1X;DP=139;DPB=139;DPRA=0;EPP=274.444;EPPR=31.2394;GTI=0;LEN=1;MEANALT=1.33333;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=4786;QR=500;RO=13;RPL=0;RPP=274.444;RPPR=31.2394;RPR=125;RUN=1;SAF=125;SAP=274.444;SAR=0;SRF=13;SRP=31.2394;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:59:6,52:6:234:52:1991:-161.576,0,-3.58171 0/1:35:6,29:6:227:29:1115:-90.1155,0,-10.2571 1/1:45:1,44:1:39:44:1680:-147.564,-9.64979,0 dDocent_Contig_3383 17 . T A 1930.32 . AB=0.813333;ABP=66.9674;AC=3;AF=0.5;AN=6;AO=61;CIGAR=1X;DP=75;DPB=75;DPRA=0;EPP=135.47;EPPR=33.4109;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=2425;QR=551;RO=14;RPL=0;RPP=135.47;RPPR=33.4109;RPR=61;RUN=1;SAF=61;SAP=135.47;SAR=0;SRF=14;SRP=33.4109;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:27:6,21:6:235:21:836:-67.4271,0,-13.3904 0/1:25:2,23:2:80:23:922:-75.758,0,-0.0660402 0/1:23:6,17:6:236:17:667:-53.4345,0,-14.6866 dDocent_Contig_3384 91 . G C 129.504 . AB=0.269231;ABP=15.0369;AC=1;AF=0.166667;AN=6;AO=7;CIGAR=1X;DP=47;DPB=47;DPRA=2.47619;EPP=18.2106;EPPR=89.8692;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=244;QR=1309;RO=40;RPL=7;RPP=18.2106;RPPR=89.8692;RPR=0;RUN=1;SAF=7;SAP=18.2106;SAR=0;SRF=40;SRP=89.8692;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:26:19,7:19:627:7:244:-14.4733,0,-48.9132 0/0:11:11,0:11:367:0:0:0,-3.31133,-33.3525 0/0:10:10,0:10:315:0:0:0,-3.0103,-28.6551 dDocent_Contig_3386 9 . C A 186.773 . AB=0.114679;ABP=284.146;AC=1;AF=0.166667;AN=6;AO=31;CIGAR=1X;DP=416;DPB=416;DPRA=2.90984;EPP=70.3259;EPPR=834.684;GTI=0;LEN=1;MEANALT=1.5;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=1.38778e-17;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=1177;QR=14752;RO=383;RPL=0;RPP=70.3259;RPPR=834.684;RPR=31;RUN=1;SAF=31;SAP=70.3259;SAR=0;SRF=383;SRP=834.684;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:218:192,25:192:7377:25:951:-20.2002,0,-598.068 0/0:61:60,0:60:2322:0:0:0,-18.0618,-208.802 0/0:137:131,6:131:5053:6:226:0,-20.5394,-434.072 dDocent_Contig_3387 12 . T A 24284.6 . AB=0.879532;ABP=1072.75;AC=3;AF=0.5;AN=6;AO=752;CIGAR=1X;DP=855;DPB=855;DPRA=0;EPP=1635.96;EPPR=215.815;GTI=0;LEN=1;MEANALT=1.66667;MQM=59.75;MQMR=59.5816;NS=3;NUMALT=1;ODDS=0;PAIRED=0.994681;PAIREDR=0.867347;PAO=0;PQA=0;PQR=0;PRO=0;QA=29997;QR=3932;RO=98;RPL=0;RPP=1635.96;RPPR=215.815;RPR=752;RUN=1;SAF=752;SAP=1635.96;SAR=0;SRF=98;SRP=215.815;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:410:41,366:41:1647:366:14614:-1189.3,0,-25.8325 0/1:102:18,82:18:725:82:3258:-263.057,0,-33.3355 0/1:343:39,304:39:1560:304:12125:-981.63,0,-37.3843 dDocent_Contig_3390 14 . G T 662.12 . AB=0.384615;ABP=10.5269;AC=3;AF=0.5;AN=6;AO=25;CIGAR=1X2M;DP=65;DPB=65;DPRA=0;EPP=57.2971;EPPR=81.1833;GTI=0;LEN=1;MEANALT=2;MQM=60;MQMR=60;NS=3;NUMALT=2;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=998;QR=1448;RO=36;RPL=0;RPP=57.2971;RPPR=81.1833;RPR=25;RUN=1;SAF=25;SAP=57.2971;SAR=0;SRF=36;SRP=81.1833;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|1:30:18,0,12:18:727:0,12:0,476:-34.1533,-39.5718,-99.5095,0,-60.3367,-56.7244 0|1:11:6,0,4:6:243:0,4:0,157:-11.0921,-12.8983,-32.9407,0,-20.0332,-18.8291 0|1:24:12,2,9:12:478:2,9:80,365:-26.4894,-23.5128,-62.2662,0,-32.7655,-36.6463 dDocent_Contig_3391 107 . N T 66.4848 . AB=0;ABP=0;AC=2;AF=1;AN=2;AO=2;CIGAR=1X;DP=2;DPB=2;DPRA=0;EPP=7.35324;EPPR=0;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=0;NS=1;NUMALT=1;ODDS=5.99146;PAIRED=1;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=70;QR=0;RO=0;RPL=0;RPP=7.35324;RPPR=0;RPR=2;RUN=1;SAF=0;SAP=7.35324;SAR=2;SRF=0;SRP=0;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL ./.:.:.:.:.:.:.:. 1/1:2:0,2:0:0:2:70:-6.6474,-0.60206,0 ./.:.:.:.:.:.:.:. dDocent_Contig_3392 7 . T C 7107.64 . AB=0.667622;ABP=88.183;AC=4;AF=0.666667;AN=6;AO=379;CIGAR=3M1X2M;DP=547;DPB=550.5;DPRA=0;EPP=774.708;EPPR=111.584;GTI=0;LEN=1;MEANALT=7.33333;MQM=28.8364;MQMR=44.96;NS=3;NUMALT=4;ODDS=0;PAIRED=0;PAIREDR=0.36;PAO=0.666667;PQA=0;PQR=0;PRO=0.666667;QA=10350;QR=1872;RO=50;RPL=0;RPP=825.998;RPPR=111.584;RPR=379;RUN=1;SAF=373;SAP=774.708;SAR=6;SRF=50;SRP=111.584;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|1:213:21,4,15,16,144:21:797:4,15,16,144:149,573,317,3692:-246.192,-245.009,-297.659,-234.813,-281.163,-284.152,-236.493,-282.843,-272.648,-285.53,0,-46.3862,-36.1995,-37.8843,-10.5442 0|1:136:16,8,9,7,89:16:593:8,9,7,89:307,339,185,2464:-167.441,-157.674,-200.923,-163.014,-194.089,-205.962,-167.766,-198.841,-204.181,-211.316,0,-31.124,-36.4775,-41.2322,-18.9191 1|1:198:13,4,12,11,146:13:482:4,12,11,146:155,453,104,4194:-300.654,-297.533,-327.825,-294.424,-318.886,-322.308,-301.177,-325.639,-322.531,-329.362,-12.4144,-36.9106,-33.8128,-40.5774,0 dDocent_Contig_3394 64 . C A 3672.67 . AB=0.821782;ABP=93.8466;AC=4;AF=0.666667;AN=6;AO=114;CIGAR=1X;DP=133;DPB=133;DPRA=0;EPP=250.558;EPPR=44.2683;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=0.991228;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=4495;QR=767;RO=19;RPL=114;RPP=250.558;RPPR=44.2683;RPR=0;RUN=1;SAF=114;SAP=250.558;SAR=0;SRF=19;SRP=44.2683;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:68:9,59:9:361:59:2324:-188.85,0,-12.3822 0/1:33:9,24:9:365:24:945:-75.4214,0,-23.2811 1/1:32:1,31:1:41:31:1226:-106.519,-5.53839,0 dDocent_Contig_3395 25 . C T 32.2831 . AB=0.142857;ABP=26.2761;AC=1;AF=0.166667;AN=6;AO=4;CIGAR=1X;DP=43;DPB=43;DPRA=2.1875;EPP=11.6962;EPPR=87.6977;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=163;QR=1551;RO=39;RPL=0;RPP=11.6962;RPPR=87.6977;RPR=4;RUN=1;SAF=4;SAP=11.6962;SAR=0;SRF=39;SRP=87.6977;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:8:8,0:8:326:0:0:0,-2.40824,-29.7099 0/0:14:13,1:13:518:1:41:0,-0.119853,-42.8694 0/1:21:18,3:18:707:3:122:-5.05086,0,-57.6354 dDocent_Contig_3396 35 . T C 791.434 . AB=0.204188;ABP=148.181;AC=3;AF=0.5;AN=6;AO=39;CIGAR=1X;DP=191;DPB=191;DPRA=0;EPP=87.6977;EPPR=333.074;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=1568;QR=5963;RO=152;RPL=0;RPP=87.6977;RPPR=333.074;RPR=39;RUN=1;SAF=39;SAP=87.6977;SAR=0;SRF=152;SRP=333.074;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:103:80,23:80:3126:23:933:-53.2655,0,-250.421 0/1:38:34,4:34:1341:4:158:-3.16151,0,-109.518 0/1:50:38,12:38:1496:12:477:-28.2295,0,-119.832 dDocent_Contig_3397 26 . C T 2368.54 . AB=0.0823529;ABP=260.572;AC=0;AF=0;AN=6;AO=14;CIGAR=7M1X;DP=231;DPB=241.875;DPRA=0;EPP=33.4109;EPPR=280.959;GTI=0;LEN=1;MEANALT=3;MQM=60;MQMR=60;NS=3;NUMALT=2;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=553;QR=5032;RO=128;RPL=0;RPP=33.4109;RPPR=280.959;RPR=14;RUN=1;SAF=14;SAP=33.4109;SAR=0;SRF=128;SRP=280.959;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|0:132:82,41,9:82:3213:41,9:1600,351:-106.827,0,-251.858,-102.662,-235.351,-364.152 0|0:38:15,16,5:15:590:16,5:634,202:-47.706,0,-43.7507,-35.5611,-31.9057,-82.5964 0|0:61:31,30,0:31:1229:30,0:1177,0:-87.8446,0,-92.5276,-97.1765,-101.559,-198.341 dDocent_Contig_3398 58 . A G 461.254 . AB=0.268293;ABP=41.2494;AC=2;AF=0.333333;AN=6;AO=22;CIGAR=1X;DP=87;DPB=87;DPRA=8.2;EPP=50.7827;EPPR=144.156;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=6.93889e-18;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=818;QR=2420;RO=65;RPL=22;RPP=50.7827;RPPR=144.156;RPR=0;RUN=1;SAF=22;SAP=50.7827;SAR=0;SRF=65;SRP=144.156;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:69:49,20:49:1827:20:740:-46.1535,0,-143.913 0/0:5:5,0:5:186:0:0:0,-1.50515,-17.0993 0/1:13:11,2:11:407:2:78:-3.49008,0,-33.0594 dDocent_Contig_3399 49 . T A 34.942 . AB=0.0277008;ABP=702.459;AC=2;AF=0.333333;AN=6;AO=13;CIGAR=1X3M;DP=517;DPB=518;DPRA=0;EPP=31.2394;EPPR=454.831;GTI=0;LEN=1;MEANALT=7.33333;MQM=7;MQMR=7;NS=3;NUMALT=4;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=91;QR=9272;RO=239;RPL=13;RPP=31.2394;RPPR=454.831;RPR=0;RUN=1;SAF=13;SAP=31.2394;SAR=0;SRF=239;SRP=521.992;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|1:95:37,0,37,6,9:37:1425:0,37,6,9:0,1469,42,368:-3.73632,-14.8744,-27.0287,0,-12.1605,-1.02235,-14.2829,-26.4357,-11.5683,-24.6296,-11.9152,-24.0692,-9.20032,-23.4765,-21.3599 0|1:266:122,12,102,4,10:122:4705:12,102,4,10:470,3992,28,386:-2.20892,-34.9897,-71.4413,0,-36.1223,-9.36248,-38.5389,-74.6576,-39.6717,-77.3985,-35.6507,-71.7695,-36.7833,-75.3186,-72.7043 0|0:156:80,8,45,3,11:80:3142:8,45,3,11:311,1733,21,439:0,-18.7497,-42.6386,-6.12189,-27.0841,-18.8697,-23.7864,-44.7501,-32.1194,-49.1779,-20.4668,-41.4301,-28.7994,-46.4645,-43.4499 dDocent_Contig_3400 13 . T A 3571.78 . AB=0.288499;ABP=202.333;AC=3;AF=0.5;AN=6;AO=148;CIGAR=2M1X;DP=513;DPB=513;DPRA=0;EPP=324.388;EPPR=715.877;GTI=0;LEN=1;MEANALT=3.33333;MQM=54;MQMR=47.6983;NS=3;NUMALT=1;ODDS=0;PAIRED=0.493243;PAIREDR=0.482759;PAO=0;PQA=0;PQR=0;PRO=0;QA=5923;QR=13609;RO=348;RPL=0;RPP=324.388;RPPR=758.683;RPR=148;RUN=1;SAF=148;SAP=324.388;SAR=0;SRF=343;SRP=715.877;SRR=5;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|1:251:160,80:160:6304:80:3209:-206.674,0,-402.612 0|1:118:85,28:85:3296:28:1116:-60.4088,0,-228.756 0|1:144:103,40:103:4009:40:1598:-95.6182,0,-280.016 dDocent_Contig_3401 11 . T C 88.968 . AB=0.176471;ABP=33.9218;AC=2;AF=0.333333;AN=6;AO=8;CIGAR=1X;DP=74;DPB=74;DPRA=0;EPP=20.3821;EPPR=146.327;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=3.46945e-18;PAIRED=0;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=325;QR=2658;RO=66;RPL=0;RPP=20.3821;RPPR=146.327;RPR=8;RUN=1;SAF=8;SAP=20.3821;SAR=0;SRF=66;SRP=146.327;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:40:38,2:38:1524:2:82:0,-4.26152,-129.622 0/1:9:7,2:7:283:2:82:-5.07041,0,-23.1341 0/1:25:21,4:21:851:4:161:-7.34915,0,-69.3758 dDocent_Contig_3402 12 . C A 7049.62 . AB=0.734219;ABP=146.436;AC=3;AF=0.5;AN=6;AO=221;CIGAR=4M1X;DP=301;DPB=304.2;DPRA=0;EPP=482.906;EPPR=135.47;GTI=0;LEN=1;MEANALT=2.33333;MQM=60;MQMR=60;NS=3;NUMALT=2;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=8843;QR=2391;RO=61;RPL=0;RPP=482.906;RPPR=135.47;RPR=221;RUN=1;SAF=221;SAP=482.906;SAR=0;SRF=61;SRP=135.47;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|1:172:30,12,127:30:1173:12,127:478,5064:-407.993,-377.662,-470.488,0,-57.0729,-58.2069 0|1:42:17,0,25:17:665:0,25:0,1015:-78.9996,-84.1171,-138.788,0,-55.0679,-47.5422 0|1:87:14,4,69:14:553:4,69:159,2764:-223.492,-214.615,-258.917,0,-32.4125,-24.7331 dDocent_Contig_3403 78 . T C 4409.59 . AB=0.170616;ABP=201.849;AC=3;AF=0.5;AN=6;AO=36;CIGAR=1X2M1X;DP=211;DPB=211;DPRA=0;EPP=81.1833;EPPR=46.4397;GTI=0;LEN=1;MEANALT=3;MQM=60;MQMR=60;NS=3;NUMALT=2;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=1272;QR=715;RO=20;RPL=36;RPP=81.1833;RPPR=46.4397;RPR=0;RUN=1;SAF=36;SAP=81.1833;SAR=0;SRF=20;SRP=46.4397;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 1|0:111:9,16,82:9:325:16,82:569,2789:-243.355,-199.691,-221.402,-19.8473,0,-21.6932 1|0:22:1,4,17:1:37:4,17:145,582:-55.7255,-44.1834,-46.0079,-8.80479,0,-6.71579 1|0:78:10,16,49:10:353:16,49:558,1651:-147.402,-105.025,-128.957,-16.634,0,-30.631 dDocent_Contig_3404 46 . A G 863.226 . AB=0.535714;ABP=3.63072;AC=3;AF=0.5;AN=6;AO=30;CIGAR=1X;DP=56;DPB=56;DPRA=0;EPP=68.1545;EPPR=59.4686;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=1196;QR=1042;RO=26;RPL=0;RPP=68.1545;RPPR=59.4686;RPR=30;RUN=1;SAF=30;SAP=68.1545;SAR=0;SRF=26;SRP=59.4686;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:21:8,13:8:325:13:527:-41.4546,0,-23.298 0/1:11:5,6:5:203:6:233:-18.0247,0,-15.3417 0/1:24:13,11:13:514:11:436:-32.3662,0,-39.3775 dDocent_Contig_3405 82 . T C 1909.08 . AB=0.672727;ABP=31.5158;AC=3;AF=0.5;AN=6;AO=74;CIGAR=1X;DP=110;DPB=110;DPRA=0;EPP=163.699;EPPR=72.7387;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=58.8056;NS=3;NUMALT=1;ODDS=6.93889e-18;PAIRED=1;PAIREDR=0.972222;PAO=0;PQA=0;PQR=0;PRO=0;QA=2540;QR=1258;RO=36;RPL=74;RPP=163.699;RPPR=81.1833;RPR=0;RUN=1;SAF=74;SAP=163.699;SAR=0;SRF=35;SRP=72.7387;SRR=1;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:55:13,42:13:451:42:1446:-113.88,0,-24.3651 0/1:26:10,16:10:356:16:537:-40.8219,0,-22.3725 0/1:29:13,16:13:451:16:557:-41.729,0,-32.1919 dDocent_Contig_3406 43 . G A 244.32 . AB=0.181818;ABP=41.702;AC=1;AF=0.166667;AN=6;AO=8;CIGAR=1X1M1X;DP=68;DPB=68;DPRA=4.88889;EPP=20.3821;EPPR=105.07;GTI=0;LEN=1;MEANALT=3;MQM=60;MQMR=60;NS=3;NUMALT=2;ODDS=6.93889e-18;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=317;QR=1820;RO=47;RPL=0;RPP=20.3821;RPPR=105.07;RPR=8;RUN=1;SAF=8;SAP=20.3821;SAR=0;SRF=47;SRP=105.07;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|1:44:27,8,7:27:1043:8,7:317,282:-17.9629,0,-83.2339,-2.84452,-62.396,-86.3834 0|0:9:9,0,0:9:348:0,0:0,0:0,-2.70927,-31.6776,-2.70927,-31.6776,-31.6776 0|0:15:11,0,4:11:429:0,4:0,157:-9.99173,-13.3031,-48.5612,0,-35.6495,-34.4454 dDocent_Contig_3407 117 . A T 262.378 . AB=0.333333;ABP=10.9724;AC=2;AF=0.333333;AN=6;AO=11;CIGAR=1X4M;DP=45;DPB=45;DPRA=1.375;EPP=26.8965;EPPR=68.1545;GTI=0;LEN=1;MEANALT=1.5;MQM=60;MQMR=60;NS=3;NUMALT=2;ODDS=0;PAIRED=0;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=427;QR=1027;RO=30;RPL=0;RPP=26.8965;RPPR=68.1545;RPR=11;RUN=1;SAF=11;SAP=26.8965;SAR=0;SRF=0;SRP=68.1545;SRR=30;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|1:17:10,0,7:10:347:0,7:0,273:-19.8205,-22.8308,-51.0136,0,-28.5548,-26.4476 0|0:12:11,0,0:11:382:0,0:0,0:0,-3.31133,-34.6212,-3.31133,-34.6212,-34.6212 0|1:16:9,3,4:9:298:3,4:113,154:-9.94011,-3.39289,-26.5546,0,-14.7966,-22.8638 dDocent_Contig_3408 14 . G C 56.352 . AB=0.214286;ABP=12.937;AC=1;AF=0.166667;AN=6;AO=3;CIGAR=1X;DP=43;DPB=43;DPRA=0.965517;EPP=9.52472;EPPR=89.8692;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=122;QR=1599;RO=40;RPL=0;RPP=9.52472;RPPR=89.8692;RPR=3;RUN=1;SAF=3;SAP=9.52472;SAR=0;SRF=40;SRP=89.8692;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:14:11,3:11:442:3:122:-7.15807,0,-35.9205 0/0:19:19,0:19:759:0:0:0,-5.71957,-68.6317 0/0:10:10,0:10:398:0:0:0,-3.0103,-36.1782 dDocent_Contig_3409 13 . T A 2097.98 . AB=0.514493;ABP=3.26206;AC=3;AF=0.5;AN=6;AO=71;CIGAR=1X;DP=138;DPB=138;DPRA=0;EPP=157.185;EPPR=148.499;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=2844;QR=2666;RO=67;RPL=0;RPP=157.185;RPPR=148.499;RPR=71;RUN=1;SAF=71;SAP=157.185;SAR=0;SRF=67;SRP=148.499;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:77:35,42:35:1394:42:1686:-128.786,0,-102.535 0/1:21:6,15:6:232:15:597:-47.7451,0,-14.9226 0/1:40:26,14:26:1040:14:561:-38.7897,0,-81.8527 dDocent_Contig_3410 79 . T G 878.963 . AB=0.240223;ABP=107.932;AC=3;AF=0.5;AN=6;AO=43;CIGAR=1X;DP=179;DPB=179;DPRA=0;EPP=96.3836;EPPR=298.331;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=1625;QR=4794;RO=136;RPL=43;RPP=96.3836;RPPR=298.331;RPR=0;RUN=1;SAF=43;SAP=96.3836;SAR=0;SRF=136;SRP=298.331;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:101:67,34:67:2323:34:1284:-85.4373,0,-178.919 0/1:29:26,3:26:940:3:123:-2.73492,0,-76.1791 0/1:49:43,6:43:1531:6:218:-5.22111,0,-123.323 dDocent_Contig_3411 47 . G A 214.871 . AB=0.272727;ABP=17.8158;AC=1;AF=0.166667;AN=6;AO=9;CIGAR=1X;DP=52;DPB=52;DPRA=3.47368;EPP=22.5536;EPPR=96.3836;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=362;QR=1681;RO=43;RPL=0;RPP=22.5536;RPPR=96.3836;RPR=9;RUN=1;SAF=9;SAP=22.5536;SAR=0;SRF=43;SRP=96.3836;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:33:24,9:24:960:9:362:-23.01,0,-76.7642 0/0:9:9,0:9:346:0:0:0,-2.70927,-31.4951 0/0:10:10,0:10:375:0:0:0,-3.0103,-34.088 dDocent_Contig_3412 43 . A G 118.837 . AB=0.12605;ABP=147.55;AC=3;AF=0.5;AN=6;AO=15;CIGAR=1X;DP=119;DPB=119;DPRA=0;EPP=35.5824;EPPR=228.843;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=579;QR=4086;RO=104;RPL=0;RPP=35.5824;RPPR=228.843;RPR=15;RUN=1;SAF=15;SAP=35.5824;SAR=0;SRF=104;SRP=228.843;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:86:77,9:77:3039:9:342:-5.24389,0,-247.723 0/1:13:10,3:10:387:3:116:-6.90289,0,-31.2699 0/1:20:17,3:17:660:3:121:-5.2596,0,-53.7066 dDocent_Contig_3413 17 . A G 2138.16 . AB=0.570312;ABP=8.50684;AC=3;AF=0.5;AN=6;AO=73;CIGAR=1X;DP=128;DPB=128;DPRA=0;EPP=161.528;EPPR=122.441;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=6.93889e-18;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=2855;QR=2148;RO=55;RPL=0;RPP=161.528;RPPR=122.441;RPR=73;RUN=1;SAF=73;SAP=161.528;SAR=0;SRF=55;SRP=122.441;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:65:23,42:23:896:42:1618:-126.299,0,-61.386 0/1:35:18,17:18:714:17:678:-50.8151,0,-54.0523 0/1:28:14,14:14:538:14:559:-42.2249,0,-40.3354 dDocent_Contig_3414 26 . G A 3159.75 . AB=0.0909091;ABP=146.92;AC=0;AF=0;AN=6;AO=10;CIGAR=1X2M1X;DP=174;DPB=174;DPRA=0;EPP=24.725;EPPR=92.2337;GTI=0;LEN=1;MEANALT=2.5;MQM=15;MQMR=57.7111;NS=3;NUMALT=2;ODDS=0;PAIRED=1;PAIREDR=0.911111;PAO=0;PQA=0;PQR=0;PRO=0;QA=395;QR=1753;RO=45;RPL=0;RPP=24.725;RPPR=100.727;RPR=10;RUN=1;SAF=10;SAP=24.725;SAR=0;SRF=44;SRP=92.2337;SRR=1;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|0:99:24,9,65:24:936:9,65:355,2606:-178.781,-176.602,-248.62,0,-65.4977,-55.297 0|0:43:19,0,21:19:741:0,21:0,827:-53.1427,-58.8623,-119.788,0,-60.9673,-54.6457 0|0:32:2,1,29:2:76:1,29:40,1152:-87.5751,-87.1364,-93.0242,-2.39059,-7.75788,0 dDocent_Contig_3415 54 . T C 1301.41 . AB=0.323529;ABP=39.7976;AC=2;AF=0.333333;AN=6;AO=44;CIGAR=12M1X1M;DP=136;DPB=106.429;DPRA=0;EPP=98.5551;EPPR=96.3836;GTI=0;LEN=1;MEANALT=3.66667;MQM=60;MQMR=60;NS=3;NUMALT=4;ODDS=0;PAIRED=0.954545;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=1678;QR=1651;RO=43;RPL=0;RPP=98.5551;RPPR=96.3836;RPR=44;RUN=1;SAF=44;SAP=98.5551;SAR=0;SRF=43;SRP=96.3836;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|1:66:18,4,21,21,0:18:693:4,21,21,0:158,766,798,0:-65.6791,-58.0939,-113.79,-8.53052,-52.4253,-59.1067,-5.66225,-49.561,0,-56.2431,-71.0977,-114.994,-65.4283,-62.5647,-127.997 0|1:22:9,0,0,11,2:9:345:0,0,11,2:0,0,401,76:-30.0277,-32.737,-61.0593,-32.737,-61.0593,-61.0593,0,-28.3183,-28.3183,-25.0069,-26.5016,-54.8256,-54.8256,-22.0858,-54.2235 0|0:48:16,1,17,12,1:16:613:1,17,12,1:31,555,479,37:-39.957,-42.2865,-92.3027,0,-47.8187,-45.1871,-5.29736,-53.1419,-10.8463,-52.0167,-41.746,-89.5766,-47.2782,-52.6016,-91.7629 dDocent_Contig_3416 28 . G A 335.189 . AB=0.2;ABP=69.4574;AC=3;AF=0.5;AN=6;AO=17;CIGAR=1X;DP=85;DPB=85;DPRA=0;EPP=39.9253;EPPR=150.67;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=0.970588;PAO=0;PQA=0;PQR=0;PRO=0;QA=685;QR=2638;RO=68;RPL=0;RPP=39.9253;RPPR=150.67;RPR=17;RUN=1;SAF=17;SAP=39.9253;SAR=0;SRF=68;SRP=150.67;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:35:27,8:27:1053:8:319:-18.541,0,-84.5289 0/1:25:18,7:18:679:7:285:-18.4987,0,-53.9083 0/1:25:23,2:23:906:2:81:-0.159984,0,-74.321 dDocent_Contig_3417 91 . T C 59.4695 . AB=0.1875;ABP=30.1537;AC=1;AF=0.166667;AN=6;AO=7;CIGAR=1X;DP=119;DPB=119;DPRA=1.10811;EPP=3.32051;EPPR=246.215;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=0.571429;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=225;QR=3866;RO=112;RPL=7;RPP=18.2106;RPPR=246.215;RPR=0;RUN=1;SAF=4;SAP=3.32051;SAR=3;SRF=112;SRP=246.215;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:50:49,1:49:1691:1:35:0,-11.5529,-148.98 0/1:32:26,6:26:890:6:190:-7.77086,0,-70.7796 0/0:37:37,0:37:1285:0:0:0,-11.1381,-115.953 dDocent_Contig_3418 12 . A T 4951.83 . AB=0.623306;ABP=51.7419;AC=3;AF=0.5;AN=6;AO=230;CIGAR=1X;DP=369;DPB=369;DPRA=0;EPP=502.449;EPPR=304.845;GTI=0;LEN=1;MEANALT=1;MQM=30.4435;MQMR=59.8273;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=9236;QR=5515;RO=139;RPL=0;RPP=502.449;RPPR=304.845;RPR=230;RUN=1;SAF=230;SAP=502.449;SAR=0;SRF=139;SRP=304.845;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:206:90,116:90:3550:116:4686:-249.934,0,-257.501 0/1:65:23,42:23:915:42:1661:-82.9581,0,-63.089 0/1:98:26,72:26:1050:72:2889:-167.813,0,-65.2864 dDocent_Contig_3419 45 . T C 228.755 . AB=0.375;ABP=6.26751;AC=2;AF=0.333333;AN=6;AO=9;CIGAR=1X;DP=33;DPB=33;DPRA=1.33333;EPP=22.5536;EPPR=55.1256;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=365;QR=955;RO=24;RPL=0;RPP=22.5536;RPPR=55.1256;RPR=9;RUN=1;SAF=9;SAP=22.5536;SAR=0;SRF=24;SRP=55.1256;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:17:10,7:10:401:7:283:-20.7259,0,-31.3323 0/1:7:5,2:5:199:2:82:-5.67247,0,-16.1811 0/0:9:9,0:9:355:0:0:0,-2.70927,-32.3107 dDocent_Contig_3420 69 . T C 3215.29 . AB=0.664634;ABP=41.6201;AC=3;AF=0.5;AN=6;AO=109;CIGAR=1X;DP=164;DPB=164;DPRA=0;EPP=239.701;EPPR=122.441;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=4174;QR=2169;RO=55;RPL=109;RPP=239.701;RPPR=122.441;RPR=0;RUN=1;SAF=109;SAP=239.701;SAR=0;SRF=55;SRP=122.441;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:104:31,73:31:1239:73:2862:-226.392,0,-80.471 0/1:20:7,13:7:284:13:476:-37.1497,0,-19.9134 0/1:40:17,23:17:646:23:836:-63.5099,0,-46.4324 dDocent_Contig_3421 57 . C A 31.1733 . AB=0.121212;ABP=44.1367;AC=1;AF=0.166667;AN=6;AO=4;CIGAR=1X;DP=347;DPB=347;DPRA=0.210191;EPP=11.6962;EPPR=747.825;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=161;QR=13552;RO=343;RPL=4;RPP=11.6962;RPPR=747.825;RPR=0;RUN=1;SAF=4;SAP=11.6962;SAR=0;SRF=343;SRP=747.825;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:211:211,0:211:8386:0:0:0,-63.5173,-754.289 0/1:33:29,4:29:1125:4:161:-4.94091,0,-91.5982 0/0:103:103,0:103:4041:0:0:0,-31.0061,-363.69 dDocent_Contig_3422 13 . T C 1391.87 . AB=0.187845;ABP=309.392;AC=3;AF=0.5;AN=6;AO=68;CIGAR=1X3M;DP=362;DPB=362;DPRA=0;EPP=150.67;EPPR=593.651;GTI=0;LEN=1;MEANALT=1.66667;MQM=60;MQMR=60;NS=3;NUMALT=2;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=2744;QR=10853;RO=272;RPL=0;RPP=150.67;RPPR=593.651;RPR=68;RUN=1;SAF=68;SAP=150.67;SAR=0;SRF=272;SRP=593.651;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|1:213:173,12,28:173:6873:12,28:480,1139:-41.879,-54.4193,-616.618,0,-526.277,-557.388 0|1:18:8,0,10:8:322:0,10:0,395:-30.4894,-32.8976,-59.4396,0,-26.9407,-23.9304 0|1:131:91,10,30:91:3658:10,30:405,1210:-72.3419,-66.3394,-364.774,0,-268.047,-292.412 dDocent_Contig_3423 19 . G A 2149.06 . AB=0.663551;ABP=27.8706;AC=3;AF=0.5;AN=6;AO=71;CIGAR=1X;DP=107;DPB=107;DPRA=0;EPP=157.185;EPPR=81.1833;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=2797;QR=1391;RO=36;RPL=0;RPP=157.185;RPPR=81.1833;RPR=71;RUN=1;SAF=71;SAP=157.185;SAR=0;SRF=36;SRP=81.1833;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:52:15,37:15:563:37:1452:-115.274,0,-35.3486 0/1:33:15,18:15:598:18:704:-53.7535,0,-44.2262 0/1:22:6,16:6:230:16:641:-51.4018,0,-14.4374 dDocent_Contig_3424 35 . A T 612.29 . AB=0.155102;ABP=256.151;AC=1;AF=0.166667;AN=6;AO=45;CIGAR=1X;DP=378;DPB=378;DPRA=0;EPP=100.727;EPPR=726.111;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=1791;QR=13167;RO=333;RPL=0;RPP=100.727;RPPR=726.111;RPR=45;RUN=1;SAF=45;SAP=100.727;SAR=0;SRF=333;SRP=726.111;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:245:207,38:207:8198:38:1514:-62.7518,0,-663.656 0/0:52:49,3:49:1942:3:117:0,-4.74498,-164.075 0/0:81:77,4:77:3027:4:160:0,-9.6,-257.744 dDocent_Contig_3425 9 . C T 102.747 . AB=0.128205;ABP=96.662;AC=1;AF=0.166667;AN=6;AO=10;CIGAR=1X;DP=152;DPB=152;DPRA=2.10811;EPP=24.725;EPPR=311.359;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=388;QR=5463;RO=142;RPL=0;RPP=24.725;RPPR=311.359;RPR=10;RUN=1;SAF=10;SAP=24.725;SAR=0;SRF=142;SRP=311.359;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:78:68,10:68:2630:10:388:-11.7975,0,-213.406 0/0:43:43,0:43:1646:0:0:0,-12.9443,-148.404 0/0:31:31,0:31:1187:0:0:0,-9.33193,-107.126 dDocent_Contig_3426 24 . C T 990.351 . AB=0.390476;ABP=13.9504;AC=2;AF=0.333333;AN=6;AO=41;CIGAR=1X;DP=151;DPB=151;DPRA=1.1413;EPP=92.0407;EPPR=241.872;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=6.93889e-18;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=1472;QR=4286;RO=110;RPL=0;RPP=92.0407;RPPR=241.872;RPR=41;RUN=1;SAF=41;SAP=92.0407;SAR=0;SRF=110;SRP=241.872;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:72:34,38:34:1316:38:1355:-100.544,0,-97.0303 0/1:33:30,3:30:1160:3:117:-0.976222,0,-94.7483 0/0:46:46,0:46:1810:0:0:0,-13.8474,-163.125 dDocent_Contig_3427 7 . T C 3758.24 . AB=0.391691;ABP=37.3479;AC=3;AF=0.5;AN=6;AO=132;CIGAR=1X5M1X;DP=337;DPB=337;DPRA=0;EPP=289.645;EPPR=196.271;GTI=0;LEN=1;MEANALT=7.33333;MQM=55.4621;MQMR=60;NS=3;NUMALT=4;ODDS=0;PAIRED=0.30303;PAIREDR=0.707865;PAO=0;PQA=0;PQR=0;PRO=0;QA=4914;QR=3489;RO=89;RPL=0;RPP=289.645;RPPR=196.271;RPR=132;RUN=1;SAF=132;SAP=289.645;SAR=0;SRF=89;SRP=196.271;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|1:175:53,11,56,40,9:53:2074:11,56,40,9:419,2080,1581,363:-151.461,-134.235,-301.461,0,-137.356,-153.678,-40.2165,-177.577,-43.3417,-198.716,-137.492,-274.85,-140.613,-180.834,-305.321 1|0:77:7,8,44,10,3:7:279:8,44,10,3:311,1631,394,122:-140.188,-116.737,-137.307,-9.41839,-6.84057,-19.1524,-109.897,-107.318,0,-129.866,-132.231,-129.651,-22.3326,-122.812,-154.306 0|1:85:29,4,32,14,1:29:1136:4,32,14,1:157,1203,567,40:-89.6977,-85.5139,-177.729,0,-80.5049,-83.7849,-51.6658,-132.175,-46.6588,-140.874,-95.1321,-175.638,-90.1226,-141.794,-188.25 dDocent_Contig_3428 83 . A G 1751.5 . AB=0.269461;ABP=80.1041;AC=2;AF=0.333334;AN=6;AO=45;CIGAR=1X1M;DP=177;DPB=177;DPRA=8.35;EPP=100.727;EPPR=163.699;GTI=0;LEN=1;MEANALT=2.5;MQM=60;MQMR=60;NS=3;NUMALT=2;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=1563;QR=2472;RO=74;RPL=45;RPP=100.727;RPPR=163.699;RPR=0;RUN=1;SAF=45;SAP=100.727;SAR=0;SRF=74;SRP=163.699;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|1:113:39,50,23:39:1293:50,23:1677,799:-124.08,0,-89.5279,-70.8569,-39.6144,-168.521 0|0:10:10,0,0:10:336:0,0:0,0:0,-3.0103,-30.5659,-3.0103,-30.5659,-30.5659 0|1:54:25,7,22:25:843:7,22:236,764:-54.5935,-42.9953,-109.201,0,-49.192,-61.6956 dDocent_Contig_3429 49 . T C 38.9847 . AB=0.1875;ABP=16.582;AC=1;AF=0.166667;AN=6;AO=4;CIGAR=2X1M1X2M1X;DP=76;DPB=76;DPRA=0.555556;EPP=11.6962;EPPR=157.185;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=153;QR=2624;RO=71;RPL=4;RPP=11.6962;RPPR=157.185;RPR=0;RUN=1;SAF=4;SAP=11.6962;SAR=0;SRF=71;SRP=157.185;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|0:36:35,0:35:1280:0:0:0,-10.536,-115.416 0|1:16:13,3:13:481:3:113:-5.72233,0,-38.8112 0|0:24:23,1:23:863:1:40:0,-3.22904,-73.9867 dDocent_Contig_3430 70 . G C 457.332 . AB=0.0561798;ABP=307.553;AC=2;AF=0.333333;AN=6;AO=10;CIGAR=11M1X1M;DP=200;DPB=203;DPRA=4.04545;EPP=24.725;EPPR=333.074;GTI=0;LEN=1;MEANALT=2.5;MQM=60;MQMR=60;NS=3;NUMALT=2;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=376;QR=5735;RO=152;RPL=10;RPP=24.725;RPPR=333.074;RPR=0;RUN=1;SAF=10;SAP=24.725;SAR=0;SRF=152;SRP=333.074;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|1:151:114,27,8:114:4308:27,8:882,302:-36.8804,0,-344.997,-46.435,-328.373,-397.183 0|0:22:21,0,0:21:795:0,0:0,0:0,-6.32163,-71.7917,-6.32163,-71.7917,-71.7917 0|1:27:17,8,2:17:632:8,2:222,74:-12.3757,0,-49.3205,-11.4207,-45.6749,-62.6098 dDocent_Contig_3431 12 . G T 669.663 . AB=0.377049;ABP=11.0198;AC=3;AF=0.5;AN=6;AO=23;CIGAR=1X3M2I1M1X1M1X;DP=61;DPB=68;DPRA=0;EPP=52.9542;EPPR=70.3259;GTI=0;LEN=1;MEANALT=1.66667;MQM=60;MQMR=60;NS=3;NUMALT=3;ODDS=6.93889e-18;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=907;QR=1146;RO=31;RPL=0;RPP=52.9542;RPPR=70.3259;RPR=23;RUN=1;SAF=23;SAP=52.9542;SAR=0;SRF=31;SRP=70.3259;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|1:33:20,8,5,0:20:729:8,5,0:317,196,0:-20.0749,0,-57.1172,-9.97849,-43.4013,-67.9981,-26.0955,-59.5254,-69.5032,-85.6246 1|0:7:0,5,0,2:0:0:5,0,2:192,0,78:-22.5558,-6.80141,-5.29626,-22.5558,-6.80141,-22.5558,-16.1423,0,-16.1423,-15.5403 0|1:21:11,10,0,0:11:417:10,0,0:398,0,0:-29.8585,0,-31.5585,-33.1698,-34.5688,-67.35,-33.1698,-34.5688,-67.35,-67.35 dDocent_Contig_3432 172 . T C 183.78 . AB=0.142857;ABP=103.829;AC=2;AF=0.333333;AN=6;AO=14;CIGAR=1X;DP=105;DPB=105;DPRA=0;EPP=33.4109;EPPR=200.614;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=0.928571;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=573;QR=3554;RO=91;RPL=14;RPP=33.4109;RPPR=200.614;RPR=0;RUN=1;SAF=0;SAP=33.4109;SAR=14;SRF=0;SRP=200.614;SRR=91;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:71:65,6:65:2549:6:245:-1.05634,0,-208.195 0/1:20:13,7:13:508:7:287:-20.1846,0,-40.0463 0/0:14:13,1:13:497:1:41:0,-0.119853,-40.9757 dDocent_Contig_3433 184 . T G 63.9039 . AB=0.171429;ABP=35.8306;AC=3;AF=0.5;AN=6;AO=6;CIGAR=1X;DP=35;DPB=35;DPRA=0;EPP=16.0391;EPPR=65.983;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=236;QR=1161;RO=29;RPL=6;RPP=16.0391;RPPR=65.983;RPR=0;RUN=1;SAF=0;SAP=16.0391;SAR=6;SRF=0;SRP=65.983;SRR=29;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:13:11,2:11:444:2:81:-3.77234,0,-36.4018 0/1:7:5,2:5:189:2:82:-5.67247,0,-15.2647 0/1:15:13,2:13:528:2:73:-2.41374,0,-43.3511 dDocent_Contig_3434 36 . T G 1162.87 . AB=0.175342;ABP=337.173;AC=3;AF=0.5;AN=6;AO=64;CIGAR=1X;DP=365;DPB=365;DPRA=0;EPP=141.985;EPPR=656.623;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=2564;QR=11971;RO=301;RPL=0;RPP=141.985;RPPR=656.623;RPR=64;RUN=1;SAF=64;SAP=141.985;SAR=0;SRF=301;SRP=656.623;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:155:133,22:133:5356:22:874:-32.3002,0,-435.211 0/1:84:64,20:64:2507:20:807:-47.6611,0,-200.488 0/1:126:104,22:104:4108:22:883:-41.8481,0,-331.758 dDocent_Contig_3435 12 . C T 1130.52 . AB=0.189024;ABP=278.522;AC=3;AF=0.5;AN=6;AO=62;CIGAR=1X;DP=328;DPB=328;DPRA=0;EPP=137.642;EPPR=580.622;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=2404;QR=10516;RO=266;RPL=0;RPP=137.642;RPPR=580.622;RPR=62;RUN=1;SAF=62;SAP=137.642;SAR=0;SRF=266;SRP=580.622;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:172:153,19:153:6001:19:737:-14.8781,0,-488.091 0/1:46:34,12:34:1365:12:450:-26.995,0,-109.263 0/1:110:79,31:79:3150:31:1217:-76.7014,0,-250.446 dDocent_Contig_3436 9 . G A 8762.99 . AB=0.7325;ABP=190.821;AC=3;AF=0.5;AN=6;AO=293;CIGAR=1X;DP=400;DPB=400;DPRA=0;EPP=639.252;EPPR=235.358;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=11132;QR=4094;RO=107;RPL=0;RPP=639.252;RPPR=235.358;RPR=293;RUN=1;SAF=293;SAP=639.252;SAR=0;SRF=107;SRP=235.358;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:243:68,175:68:2613:175:6657:-525.885,0,-162.209 0/1:36:9,27:9:348:27:1027:-81.9014,0,-20.8432 0/1:121:30,91:30:1133:91:3448:-274.035,0,-65.8448 dDocent_Contig_3437 7 . T C 23351.6 . AB=0.859813;ABP=484.306;AC=6;AF=1;AN=6;AO=703;CIGAR=1X2M;DP=774;DPB=774;DPRA=0;EPP=1495.01;EPPR=65.983;GTI=0;LEN=1;MEANALT=2;MQM=59.6245;MQMR=59.5172;NS=3;NUMALT=2;ODDS=0;PAIRED=0.923186;PAIREDR=0.827586;PAO=0;PQA=0;PQR=0;PRO=0;QA=26956;QR=1096;RO=29;RPL=0;RPP=1529.56;RPPR=65.983;RPR=703;RUN=1;SAF=699;SAP=1495.01;SAR=4;SRF=29;SRP=65.983;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 1|1:428:21,39,368:21:791:39,368:1503,14109:-1210.11,-1093.01,-1146.07,-58.6287,0,-12.6459 1|1:148:2,0,145:2:75:0,145:0,5543:-491.286,-491.888,-498.031,-37.3293,-43.6494,0 1|1:198:6,2,190:6:230:2,190:76,7304:-635.294,-631.024,-649.3,-38.309,-51.1226,0 dDocent_Contig_3438 11 . G T 88.9507 . AB=0.185185;ABP=26.2531;AC=1;AF=0.166667;AN=6;AO=5;CIGAR=1X2M2D1M;DP=97;DPB=94.6667;DPRA=0.771429;EPP=13.8677;EPPR=198.443;GTI=0;LEN=1;MEANALT=2;MQM=60;MQMR=60;NS=3;NUMALT=2;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=203;QR=3592;RO=90;RPL=0;RPP=13.8677;RPPR=198.443;RPR=5;RUN=1;SAF=5;SAP=13.8677;SAR=0;SRF=90;SRP=198.443;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|0:42:42,0,0:42:1675:0,0:0,0:0,-12.6433,-150.983,-12.6433,-150.983,-150.983 0|0:28:28,0,0:28:1120:0,0:0,0:0,-8.42884,-101.089,-8.42884,-101.089,-101.089 0|1:27:20,5,2:20:797:5,2:203,82:-10.719,0,-64.1171,-9.97029,-58.853,-74.9949 dDocent_Contig_3439 56 . T C 2945.52 . AB=0.344615;ABP=71.1678;AC=3;AF=0.5;AN=6;AO=112;CIGAR=1X;DP=325;DPB=325;DPRA=0;EPP=246.215;EPPR=465.534;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=4413;QR=8444;RO=213;RPL=112;RPP=246.215;RPPR=465.534;RPR=0;RUN=1;SAF=112;SAP=246.215;SAR=0;SRF=213;SRP=465.534;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:192:122,70:122:4849:70:2746:-189.454,0,-378.513 0/1:45:33,12:33:1319:12:470:-29.1043,0,-105.425 0/1:88:58,30:58:2276:30:1197:-81.5166,0,-178.51 dDocent_Contig_3440 30 . G A 79.9778 . AB=0.0606061;ABP=58.3499;AC=0;AF=0;AN=6;AO=3;CIGAR=8M1X5M;DP=146;DPB=142.071;DPRA=0.589552;EPP=9.52472;EPPR=285.302;GTI=0;LEN=1;MEANALT=3.5;MQM=60;MQMR=60;NS=3;NUMALT=4;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=122;QR=5121;RO=130;RPL=0;RPP=9.52472;RPPR=285.302;RPR=3;RUN=1;SAF=3;SAP=9.52472;SAR=0;SRF=130;SRP=285.302;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|0:46:41,0,3,1,0:41:1620:0,3,1,0:0,116,40,0:0,-12.3422,-145.655,-2.81611,-136.128,-135.225,-9.04417,-142.36,-132.832,-142.059,-12.3422,-145.655,-136.128,-142.36,-145.655 0|0:33:23,5,0,2,2:23:904:5,0,2,2:203,0,82,78:-9.82169,0,-72.844,-16.7454,-74.3491,-91.0933,-9.97548,-67.5798,-84.3243,-83.7222,-10.337,-67.9379,-84.6821,-77.913,-84.08 0|0:67:66,0,1,0,0:66:2597:0,1,0,0:0,40,0,0:0,-19.868,-233.485,-16.1733,-230.19,-229.889,-19.868,-233.485,-230.19,-233.485,-19.868,-233.485,-230.19,-233.485,-233.485 dDocent_Contig_3443 18 . T C 134.008 . AB=0.137931;ABP=102.074;AC=2;AF=0.333333;AN=6;AO=12;CIGAR=1X;DP=96;DPB=96;DPRA=4.83333;EPP=29.068;EPPR=183.243;GTI=0;LEN=1;MEANALT=1.5;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=469;QR=3110;RO=83;RPL=0;RPP=29.068;RPPR=183.243;RPR=12;RUN=1;SAF=12;SAP=29.068;SAR=0;SRF=83;SRP=183.243;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:57:49,7:49:1813:7:277:-8.30589,0,-146.449 0/0:9:9,0:9:341:0:0:0,-2.70927,-31.0434 0/1:30:25,5:25:956:5:192:-8.61783,0,-77.3192 dDocent_Contig_3444 21 . A T 6205.77 . AB=0.767123;ABP=48.2543;AC=4;AF=0.666667;AN=6;AO=183;CIGAR=1X;DP=202;DPB=202;DPRA=0;EPP=400.39;EPPR=44.2683;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=7258;QR=764;RO=19;RPL=0;RPP=400.39;RPPR=44.2683;RPR=183;RUN=1;SAF=183;SAP=400.39;SAR=0;SRF=19;SRP=44.2683;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 1/1:129:2,127:2:80:127:5078:-449.304,-31.2411,0 0/1:30:9,21:9:363:21:820:-65.0806,0,-24.0032 0/1:43:8,35:8:321:35:1360:-109.716,0,-16.3132 dDocent_Contig_3445 60 . A T 30.4219 . AB=0.142857;ABP=26.2761;AC=1;AF=0.166667;AN=6;AO=3;CIGAR=1X;DP=65;DPB=65;DPRA=0.954545;EPP=9.52472;EPPR=137.642;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=120;QR=2435;RO=62;RPL=3;RPP=9.52472;RPPR=137.642;RPR=0;RUN=1;SAF=3;SAP=9.52472;SAR=0;SRF=62;SRP=137.642;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:38:38,0:38:1481:0:0:0,-11.4391,-133.534 0/0:6:6,0:6:244:0:0:0,-1.80618,-22.3388 0/1:21:18,3:18:710:3:120:-4.86568,0,-57.9047 dDocent_Contig_3446 9 . G A 7590.55 . AB=0;ABP=0;AC=6;AF=1;AN=6;AO=240;CIGAR=1X;DP=259;DPB=259;DPRA=0;EPP=524.164;EPPR=42.0968;GTI=0;LEN=1;MEANALT=1.33333;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=9111;QR=676;RO=18;RPL=0;RPP=524.164;RPPR=42.0968;RPR=240;RUN=1;SAF=240;SAP=524.164;SAR=0;SRF=18;SRP=42.0968;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 1/1:143:10,132:10:369:132:4994:-415.956,-9.32472,0 1/1:52:3,49:3:117:49:1875:-158.085,-4.74318,0 1/1:64:5,59:5:190:59:2242:-184.537,-1.79918,0 dDocent_Contig_3447 10 . A C 43.5395 . AB=0.142857;ABP=41.7866;AC=2;AF=0.333333;AN=6;AO=5;CIGAR=1X;DP=69;DPB=69;DPRA=0.514706;EPP=13.8677;EPPR=141.985;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=3.46945e-18;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=196;QR=2563;RO=64;RPL=0;RPP=13.8677;RPPR=141.985;RPR=5;RUN=1;SAF=5;SAP=13.8677;SAR=0;SRF=64;SRP=141.985;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:34:34,0:34:1356:0:0:0,-10.235,-122.299 0/1:7:5,2:5:197:2:74:-4.91681,0,-15.9988 0/1:28:25,3:25:1010:3:122:-2.94365,0,-82.7652 dDocent_Contig_3448 107 . N A 50.3502 . AB=0;ABP=0;AC=2;AF=1;AN=2;AO=2;CIGAR=1X;DP=2;DPB=2;DPRA=0;EPP=7.35324;EPPR=0;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=0;NS=1;NUMALT=1;ODDS=5.99146;PAIRED=1;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=53;QR=0;RO=0;RPL=0;RPP=7.35324;RPPR=0;RPR=2;RUN=1;SAF=0;SAP=7.35324;SAR=2;SRF=0;SRP=0;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL ./.:.:.:.:.:.:.:. 1/1:2:0,2:0:0:2:53:-5.03393,-0.60206,0 ./.:.:.:.:.:.:.:. dDocent_Contig_3451 24 . T G 482.466 . AB=0.0491228;ABP=506.251;AC=3;AF=0.5;AN=6;AO=14;CIGAR=1X2M;DP=285;DPB=285;DPRA=0;EPP=33.4109;EPPR=515.478;GTI=0;LEN=1;MEANALT=2;MQM=60;MQMR=60;NS=3;NUMALT=2;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=537;QR=9185;RO=236;RPL=0;RPP=33.4109;RPPR=515.478;RPR=14;RUN=1;SAF=14;SAP=33.4109;SAR=0;SRF=236;SRP=515.478;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|1:126:101,21,4:101:3963:21,4:823,161:-37.2589,0,-319.574,-54.3925,-312.626,-379.094 0|1:61:51,3,7:51:1966:3,7:120,262:-6.07863,-11.5388,-172.072,0,-151.527,-159.305 0|1:98:84,11,3:84:3256:11,3:434,114:-10.4319,0,-264.175,-26.3742,-258.139,-292.944 dDocent_Contig_3452 26 . T C 437.154 . AB=0.136564;ABP=263.443;AC=2;AF=0.333333;AN=6;AO=33;CIGAR=3M1X1M;DP=280;DPB=277.2;DPRA=0;EPP=74.6689;EPPR=504.62;GTI=0;LEN=1;MEANALT=2.66667;MQM=60;MQMR=60;NS=3;NUMALT=2;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=1321;QR=9077;RO=231;RPL=0;RPP=74.6689;RPPR=504.62;RPR=33;RUN=1;SAF=33;SAP=74.6689;SAR=0;SRF=231;SRP=504.62;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|1:149:122,6,21:122:4791:6,21:238,846:-33.0062,-50.143,-442.344,0,-374.422,-387.691 0|0:53:47,4,2:47:1859:4,2:162,76:0,-0.773518,-152.57,-7.92488,-147.543,-160.3 0|1:78:62,4,10:62:2427:4,10:161,399:-14.2318,-19.6184,-217.981,0,-186.324,-196.584 dDocent_Contig_3453 107 . N T 111.904 . AB=0;ABP=0;AC=2;AF=1;AN=2;AO=4;CIGAR=1X;DP=4;DPB=4;DPRA=0;EPP=11.6962;EPPR=0;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=0;NS=1;NUMALT=1;ODDS=7.37776;PAIRED=1;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=121;QR=0;RO=0;RPL=0;RPP=11.6962;RPPR=0;RPR=4;RUN=1;SAF=0;SAP=11.6962;SAR=4;SRF=0;SRP=0;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL ./.:.:.:.:.:.:.:. ./.:.:.:.:.:.:.:. 1/1:4:0,4:0:0:4:121:-11.1902,-1.20412,0 dDocent_Contig_3454 14 . A G 43.156 . AB=0.113208;ABP=71.8828;AC=1;AF=0.166667;AN=6;AO=8;CIGAR=1X;DP=106;DPB=106;DPRA=2.15;EPP=20.3821;EPPR=215.815;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=320;QR=3878;RO=98;RPL=0;RPP=20.3821;RPPR=215.815;RPR=8;RUN=1;SAF=8;SAP=20.3821;SAR=0;SRF=98;SRP=215.815;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:53:47,6:47:1859:6:238:-5.83845,0,-151.57 0/0:20:20,0:20:783:0:0:0,-6.0206,-70.7871 0/0:33:31,2:31:1236:2:82:0,-2.15431,-103.729 dDocent_Contig_3455 24 . C T 34.3564 . AB=0.15;ABP=24.2907;AC=1;AF=0.166667;AN=6;AO=3;CIGAR=1X;DP=108;DPB=108;DPRA=0.454545;EPP=9.52472;EPPR=231.015;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=121;QR=4227;RO=105;RPL=0;RPP=9.52472;RPPR=231.015;RPR=3;RUN=1;SAF=3;SAP=9.52472;SAR=0;SRF=105;SRP=231.015;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:53:53,0:53:2147:0:0:0,-15.9546,-193.398 0/1:20:17,3:17:678:3:121:-5.25939,0,-55.3237 0/0:35:35,0:35:1402:0:0:0,-10.536,-126.43 dDocent_Contig_3456 38 . C A 144.003 . AB=0.18;ABP=47.4821;AC=2;AF=0.333333;AN=6;AO=11;CIGAR=1X;DP=80;DPB=80;DPRA=0;EPP=26.8965;EPPR=152.842;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=439;QR=2797;RO=69;RPL=0;RPP=26.8965;RPPR=152.842;RPR=11;RUN=1;SAF=11;SAP=26.8965;SAR=0;SRF=69;SRP=152.842;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:27:23,4:23:934:4:153:-6.01178,0,-76.2338 0/1:23:18,5:18:733:5:205:-11.9113,0,-59.37 0/0:30:28,2:28:1130:2:81:0,-1.34517,-94.2944 dDocent_Contig_3457 14 . G C 956.514 . AB=0.167155;ABP=331.145;AC=3;AF=0.5;AN=6;AO=57;CIGAR=1X;DP=341;DPB=341;DPRA=0;EPP=126.784;EPPR=619.708;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=0.964912;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=2254;QR=11310;RO=284;RPL=0;RPP=126.784;RPPR=619.708;RPR=57;RUN=1;SAF=57;SAP=126.784;SAR=0;SRF=284;SRP=619.708;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:188:166,22:166:6583:22:855:-20.6643,0,-535.595 0/1:46:36,10:36:1424:10:405:-22.963,0,-114.562 0/1:107:82,25:82:3303:25:994:-57.547,0,-265.11 dDocent_Contig_3459 9 . A T 19865.4 . AB=0.0604938;ABP=1362.04;AC=0;AF=0;AN=6;AO=49;CIGAR=2X1M3X;DP=810;DPB=810;DPRA=0;EPP=109.412;EPPR=57.2971;GTI=0;LEN=1;MEANALT=7;MQM=43.7959;MQMR=60;NS=3;NUMALT=4;ODDS=0;PAIRED=0;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=1938;QR=957;RO=25;RPL=0;RPP=109.412;RPPR=57.2971;RPR=49;RUN=1;SAF=49;SAP=109.412;SAR=0;SRF=25;SRP=57.2971;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|0:456:14,115,26,23,255:14:538:115,26,23,255:4495,1033,912,9880:-1132.79,-767.461,-777.009,-1054.29,-728.918,-1090.63,-1064.68,-739.302,-1026.13,-1101.92,-325.38,0,-286.837,-297.221,-292.784 0|0:87:2,28,6,1,46:2:80:28,6,1,46:1083,243,39,1805:-230.21,-141.864,-140.026,-211.332,-128.975,-216.117,-227.71,-145.354,-214.821,-234,-82.3606,0,-69.471,-85.8501,-75.1041 0|0:267:9,52,18,25,155:9:339:52,18,25,155:2029,699,987,5999:-629.065,-465.002,-477.125,-575.761,-436.765,-598.119,-553.98,-414.984,-525.743,-574.231,-139.002,0,-110.765,-88.9833,-120.119 dDocent_Contig_3460 14 . T A 11280.6 . AB=0.9;ABP=197.574;AC=5;AF=0.833333;AN=6;AO=339;CIGAR=1X;DP=364;DPB=364;DPRA=0;EPP=739.139;EPPR=57.2971;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=1.38778e-17;PAIRED=0.988201;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=13438;QR=976;RO=25;RPL=0;RPP=739.139;RPPR=57.2971;RPR=339;RUN=1;SAF=339;SAP=739.139;SAR=0;SRF=25;SRP=57.2971;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 1/1:145:5,140:5:196:140:5532:-479.7,-25.6363,0 1/1:79:6,73:6:213:73:2891:-240.797,-4.27822,0 0/1:140:14,126:14:567:126:5015:-409.087,0,-9.22886 dDocent_Contig_3461 55 . G C 78.554 . AB=0.142857;ABP=49.5419;AC=2;AF=0.333333;AN=6;AO=6;CIGAR=1X;DP=58;DPB=58;DPRA=1.3125;EPP=16.0391;EPPR=115.927;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=237;QR=1885;RO=52;RPL=6;RPP=16.0391;RPPR=115.927;RPR=0;RUN=1;SAF=6;SAP=16.0391;SAR=0;SRF=52;SRP=115.927;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:29:24,5:24:867:5:197:-9.37653,0,-69.5967 0/0:16:16,0:16:573:0:0:0,-4.81648,-51.8855 0/1:13:12,1:12:445:1:40:-0.0822893,0,-36.4777 dDocent_Contig_3463 31 . G A 1882.44 . AB=0.533333;ABP=4.16842;AC=3;AF=0.5;AN=6;AO=64;CIGAR=1X;DP=120;DPB=120;DPRA=0;EPP=141.985;EPPR=124.613;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=2544;QR=2218;RO=56;RPL=0;RPP=141.985;RPPR=124.613;RPR=64;RUN=1;SAF=64;SAP=141.985;SAR=0;SRF=56;SRP=124.613;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:54:13,41:13:503:41:1621:-129.864,0,-29.3541 0/1:19:10,9:10:404:9:353:-26.4089,0,-31.0006 0/1:47:33,14:33:1311:14:570:-37.4936,0,-104.108 dDocent_Contig_3466 106 . N C 208.224 . AB=0;ABP=0;AC=6;AF=1;AN=6;AO=10;CIGAR=2X;DP=10;DPB=10;DPRA=0;EPP=24.725;EPPR=0;GTI=0;LEN=1;MEANALT=1;MQM=22.4;MQMR=0;NS=3;NUMALT=1;ODDS=0;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=341;QR=0;RO=0;RPL=0;RPP=24.725;RPPR=0;RPR=10;RUN=1;SAF=0;SAP=24.725;SAR=10;SRF=0;SRP=0;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 1|1:5:0,5:0:0:5:174:-10.6053,-1.50515,0 1|1:3:0,3:0:0:3:99:-5.78941,-0.90309,0 1|1:2:0,2:0:0:2:68:-3.94996,-0.60206,0 dDocent_Contig_3468 21 . G A 3284.09 . AB=0.582353;ABP=13.0246;AC=3;AF=0.5;AN=6;AO=99;CIGAR=1X4M;DP=170;DPB=170;DPRA=0;EPP=217.986;EPPR=76.8404;GTI=0;LEN=1;MEANALT=2.33333;MQM=60;MQMR=60;NS=3;NUMALT=3;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=3914;QR=1301;RO=34;RPL=0;RPP=217.986;RPPR=76.8404;RPR=99;RUN=1;SAF=99;SAP=217.986;SAR=0;SRF=34;SRP=76.8404;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|1:105:16,0,22,67:16:588:0,22,67:0,852,2643:-234.581,-239.398,-287.456,-169.416,-217.472,-210.85,-21.9418,-69.9953,0,-49.8263 0|1:11:2,2,2,5:2:82:2,2,5:75,81,201:-15.9684,-10.4331,-16.6007,-9.88892,-10.5235,-16.0585,0,-0.641983,-0.0914715,-5.26962 0|1:54:16,0,11,27:16:631:0,11,27:0,437,1070:-83.2524,-88.0689,-139.985,-52.0907,-104.006,-100.695,0,-51.9148,-15.9357,-43.787 dDocent_Contig_3469 10 . G T 35.5114 . AB=0.157895;ABP=22.325;AC=1;AF=0.166667;AN=6;AO=3;CIGAR=1X;DP=70;DPB=70;DPRA=0.745098;EPP=9.52472;EPPR=148.499;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=1.73472e-18;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=119;QR=2645;RO=67;RPL=0;RPP=9.52472;RPPR=148.499;RPR=3;RUN=1;SAF=3;SAP=9.52472;SAR=0;SRF=67;SRP=148.499;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:33:33,0:33:1295:0:0:0,-9.93399,-116.817 0/0:18:18,0:18:706:0:0:0,-5.41854,-63.8667 0/1:19:16,3:16:644:3:119:-5.37493,0,-52.574 dDocent_Contig_3471 11 . C T 113.548 . AB=0.121951;ABP=155.702;AC=2;AF=0.333333;AN=6;AO=15;CIGAR=1X;DP=177;DPB=177;DPRA=1.13889;EPP=35.5824;EPPR=350.446;GTI=0;LEN=1;MEANALT=1.5;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=566;QR=6362;RO=160;RPL=0;RPP=35.5824;RPPR=350.446;RPR=15;RUN=1;SAF=15;SAP=35.5824;SAR=0;SRF=160;SRP=350.446;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:95:82,12:82:3264:12:449:-12.3519,0,-265.437 0/1:28:25,3:25:991:3:117:-2.48045,0,-81.0593 0/0:54:53,0:53:2107:0:0:0,-15.9546,-189.481 dDocent_Contig_3472 22 . C T 16080.6 . AB=0.0517241;ABP=104.246;AC=0;AF=0;AN=6;AO=3;CIGAR=2X4M;DP=503;DPB=503;DPRA=0.260674;EPP=9.52472;EPPR=44.2683;GTI=0;LEN=1;MEANALT=5;MQM=60;MQMR=60;NS=3;NUMALT=3;ODDS=2.77556e-17;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=120;QR=748;RO=19;RPL=0;RPP=9.52472;RPPR=44.2683;RPR=3;RUN=1;SAF=3;SAP=9.52472;SAR=0;SRF=19;SRP=44.2683;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|0:290:9,0,0,272:9:353:0,0,272:0,0,10881:-946.413,-949.122,-978.153,-949.122,-978.153,-978.153,-52.8532,-81.8802,-81.8802,0 0|0:58:5,3,3,44:5:197:3,3,44:120,120,1769:-144.271,-135.891,-151.195,-135.891,-142.213,-151.195,0,-6.31965,-6.31986,-2.95996 0|0:155:5,0,0,148:5:198:0,0,148:0,0,5970:-518.865,-520.37,-536.667,-520.37,-536.667,-536.667,-28.237,-44.5524,-44.5524,0 dDocent_Contig_3473 18 . C A 14941.5 . AB=0.0418605;ABP=1178.91;AC=0;AF=0;AN=6;AO=27;CIGAR=1X2M1X1M;DP=645;DPB=645;DPRA=0;EPP=61.6401;EPPR=120.27;GTI=0;LEN=1;MEANALT=8.33333;MQM=60;MQMR=60;NS=3;NUMALT=4;ODDS=1.11022e-16;PAIRED=1;PAIREDR=0.981481;PAO=0;PQA=0;PQR=0;PRO=0;QA=1048;QR=2139;RO=54;RPL=0;RPP=61.6401;RPPR=120.27;RPR=27;RUN=1;SAF=27;SAP=61.6401;SAR=0;SRF=54;SRP=120.27;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|0:358:34,19,10,23,255:34:1346:19,10,23,255:728,397,914,10147:-825.209,-775.706,-880.763,-802.763,-853.802,-910.53,-760.204,-811.242,-838.299,-864.057,0,-51.0425,-78.0977,-35.5372,-34.0171 0|0:98:8,1,5,14,66:8:319:1,5,14,66:41,200,566,2642:-235.631,-234.655,-260.625,-221.584,-244.471,-246.35,-191.374,-214.26,-201.189,-213.43,-20.3972,-43.283,-30.2122,0,-26.7993 0|0:189:12,7,7,40,107:12:474:7,7,40,107:279,275,1620,4228:-438.83,-419.467,-456.362,-419.825,-435.851,-456.719,-308.858,-324.884,-325.242,-335.819,-94.5865,-110.612,-110.97,0,-101.377 dDocent_Contig_3475 137 . A G 119.576 . AB=0.128571;ABP=170.772;AC=2;AF=0.333333;AN=6;AO=20;CIGAR=1X;DP=171;DPB=171;DPRA=0;EPP=46.4397;EPPR=330.903;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=700;QR=5192;RO=151;RPL=0;RPP=46.4397;RPPR=330.903;RPR=20;RUN=1;SAF=0;SAP=46.4397;SAR=20;SRF=0;SRP=330.903;SRR=151;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:90:81,9:81:2857:9:315:-1.59606,0,-230.251 0/0:31:29,2:29:961:2:69:0,-2.77927,-80.2289 0/1:50:41,9:41:1374:9:316:-13.7279,0,-108.879 dDocent_Contig_3477 40 . T A 6642.31 . AB=0.121766;ABP=819.408;AC=0;AF=0;AN=6;AO=80;CIGAR=1X3M1X;DP=657;DPB=657;DPRA=0;EPP=176.728;EPPR=717.425;GTI=0;LEN=1;MEANALT=4;MQM=60;MQMR=60;NS=3;NUMALT=2;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=3174;QR=12946;RO=329;RPL=0;RPP=176.728;RPPR=717.425;RPR=80;RUN=1;SAF=80;SAP=176.728;SAR=0;SRF=329;SRP=717.425;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|0:349:169,29,146:169:6676:29,146:1157,5795:-426.135,-381.721,-922.321,0,-454.042,-505.38 0|0:130:73,16,40:73:2861:16,40:622,1576:-107.67,-78.5346,-308.975,0,-184.149,-223.219 0|0:178:87,35,50:87:3409:35,50:1395,1971:-135.95,-47.2589,-317.025,0,-165.419,-265.248 dDocent_Contig_3478 11 . A G 1013.96 . AB=0.363636;ABP=20.7769;AC=3;AF=0.5;AN=6;AO=40;CIGAR=1X;DP=110;DPB=110;DPRA=0;EPP=89.8692;EPPR=155.013;GTI=0;LEN=1;MEANALT=1;MQM=59.475;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=0.925;PAIREDR=0.828571;PAO=0;PQA=0;PQR=0;PRO=0;QA=1545;QR=2726;RO=70;RPL=0;RPP=89.8692;RPPR=155.013;RPR=40;RUN=1;SAF=40;SAP=89.8692;SAR=0;SRF=70;SRP=155.013;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:56:36,20:36:1395:20:774:-53.0793,0,-108.954 0/1:29:17,12:17:654:12:448:-31.927,0,-50.4568 0/1:25:17,8:17:677:8:323:-21.9128,0,-53.7355 dDocent_Contig_3479 80 . G A 1423.16 . AB=0.611765;ABP=12.2327;AC=3;AF=0.5;AN=6;AO=52;CIGAR=1X;DP=85;DPB=85;DPRA=0;EPP=115.927;EPPR=74.6689;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=0.75;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=1916;QR=1240;RO=33;RPL=52;RPP=115.927;RPPR=74.6689;RPR=0;RUN=1;SAF=52;SAP=115.927;SAR=0;SRF=33;SRP=74.6689;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:39:15,24:15:570:24:913:-70.7423,0,-39.8988 0/1:15:6,9:6:232:9:342:-26.6206,0,-16.7318 0/1:31:12,19:12:438:19:661:-50.4764,0,-30.4317 dDocent_Contig_3480 10 . G C 2885.47 . AB=0.27845;ABP=179.089;AC=3;AF=0.5;AN=6;AO=115;CIGAR=1X;DP=413;DPB=413;DPRA=0;EPP=252.73;EPPR=650.109;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=0.996644;PAO=0;PQA=0;PQR=0;PRO=0;QA=4641;QR=11953;RO=298;RPL=0;RPP=252.73;RPPR=650.109;RPR=115;RUN=1;SAF=115;SAP=252.73;SAR=0;SRF=298;SRP=650.109;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:172:128,44:128:5141:44:1770:-107.734,0,-410.771 0/1:77:59,18:59:2357:18:722:-42.1267,0,-189.108 0/1:164:111,53:111:4455:53:2149:-144.209,0,-351.516 dDocent_Contig_3481 32 . T C 1135.75 . AB=0.513158;ABP=3.12459;AC=3;AF=0.5;AN=6;AO=39;CIGAR=1X;DP=76;DPB=76;DPRA=0;EPP=87.6977;EPPR=83.3548;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=1566;QR=1490;RO=37;RPL=0;RPP=87.6977;RPPR=83.3548;RPR=39;RUN=1;SAF=39;SAP=87.6977;SAR=0;SRF=37;SRP=83.3548;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:37:22,15:22:892:15:607:-43.8302,0,-69.4462 0/1:18:10,8:10:393:8:320:-23.7486,0,-30.3067 0/1:21:5,16:5:205:16:639:-51.5193,0,-12.5134 dDocent_Contig_3482 19 . C T 1054.39 . AB=0.0918367;ABP=144.821;AC=0;AF=0;AN=6;AO=9;CIGAR=1X3M1X;DP=98;DPB=98;DPRA=0;EPP=22.5536;EPPR=81.1833;GTI=0;LEN=1;MEANALT=2.66667;MQM=58.8889;MQMR=60;NS=3;NUMALT=3;ODDS=0;PAIRED=0;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=355;QR=1388;RO=36;RPL=0;RPP=22.5536;RPPR=81.1833;RPR=9;RUN=1;SAF=9;SAP=22.5536;SAR=0;SRF=36;SRP=81.1833;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|0:54:11,23,14,6:11:425:23,14,6:895,559,236:-80.4279,-11.1283,-39.1038,-37.7122,0,-68.4009,-64.3299,-26.6187,-53.2052,-97.426 0|0:25:18,6,0,1:18:685:6,0,1:233,0,40:-13.6955,0,-54.3577,-19.114,-56.1638,-75.2889,-15.8256,-52.8761,-72.0014,-71.7004 0|0:19:7,6,4,2:7:278:6,4,2:231,157,79:-16.8386,0,-21.0829,-6.05607,-10.0023,-27.7433,-12.4437,-16.3881,-22.446,-34.7323 dDocent_Contig_3484 75 . A C 67.0662 . AB=0.153846;ABP=57.1301;AC=3;AF=0.5;AN=6;AO=8;CIGAR=1X;DP=52;DPB=52;DPRA=0;EPP=20.3821;EPPR=98.5551;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=0.875;PAIREDR=0.977273;PAO=0;PQA=0;PQR=0;PRO=0;QA=286;QR=1505;RO=44;RPL=8;RPP=20.3821;RPPR=98.5551;RPR=0;RUN=1;SAF=8;SAP=20.3821;SAR=0;SRF=44;SRP=98.5551;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:24:20,4:20:714:4:144:-6.0889,0,-57.3628 0/1:9:7,2:7:245:2:72:-4.12745,0,-19.681 0/1:19:17,2:17:546:2:70:-0.927826,0,-43.726 dDocent_Contig_3485 10 . G A 436.874 . AB=0.132353;ABP=322.344;AC=2;AF=0.333333;AN=6;AO=37;CIGAR=1X;DP=301;DPB=301;DPRA=0;EPP=83.3548;EPPR=576.279;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=1466;QR=10569;RO=264;RPL=0;RPP=83.3548;RPPR=576.279;RPR=37;RUN=1;SAF=37;SAP=83.3548;SAR=0;SRF=264;SRP=576.279;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:197:169,28:169:6775:28:1106:-40.5297,0,-550.145 0/0:29:28,1:28:1123:1:39:0,-4.83331,-97.4562 0/1:75:67,8:67:2671:8:321:-6.68066,0,-217.939 dDocent_Contig_3486 71 . C T 53.3338 . AB=0.3;ABP=6.48466;AC=1;AF=0.166667;AN=6;AO=4;CIGAR=1X;DP=29;DPB=29;DPRA=1.91667;EPP=11.6962;EPPR=57.2971;GTI=0;LEN=1;MEANALT=1;MQM=51.5;MQMR=60;NS=3;NUMALT=1;ODDS=1.73472e-18;PAIRED=0.75;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=148;QR=947;RO=25;RPL=4;RPP=11.6962;RPPR=57.2971;RPR=0;RUN=1;SAF=4;SAP=11.6962;SAR=0;SRF=25;SRP=57.2971;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:13:12,1:12:482:1:39:0,-1.33458,-41.1521 0/1:10:7,3:7:243:3:109:-7.1572,0,-19.1921 0/0:6:6,0:6:222:0:0:0,-1.80618,-20.3354 dDocent_Contig_3487 9 . A G 1957.02 . AB=0.530303;ABP=4.06314;AC=3;AF=0.5;AN=6;AO=70;CIGAR=1X;DP=132;DPB=132;DPRA=0;EPP=155.013;EPPR=137.642;GTI=0;LEN=1;MEANALT=1;MQM=55.6286;MQMR=59.8548;NS=3;NUMALT=1;ODDS=0;PAIRED=0.0428571;PAIREDR=0.66129;PAO=0;PQA=0;PQR=0;PRO=0;QA=2680;QR=2360;RO=62;RPL=0;RPP=155.013;RPPR=137.642;RPR=70;RUN=1;SAF=70;SAP=155.013;SAR=0;SRF=62;SRP=137.642;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:64:36,28:36:1386:28:1080:-77.8382,0,-105.736 0/1:26:12,14:12:457:14:522:-39.4703,0,-33.6521 0/1:42:14,28:14:517:28:1078:-83.9163,0,-34.2225 dDocent_Contig_3488 36 . A T 1898.12 . AB=0.18;ABP=91.9538;AC=1;AF=0.166667;AN=6;AO=18;CIGAR=9M1X6M1X3M;DP=115;DPB=110.5;DPRA=0;EPP=42.0968;EPPR=68.1545;GTI=0;LEN=1;MEANALT=2.5;MQM=60;MQMR=60;NS=3;NUMALT=3;ODDS=0;PAIRED=1;PAIREDR=0.866667;PAO=0;PQA=0;PQR=0;PRO=0;QA=715;QR=1147;RO=30;RPL=0;RPP=42.0968;RPPR=68.1545;RPR=18;RUN=1;SAF=18;SAP=42.0968;SAR=0;SRF=30;SRP=68.1545;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 1|0:82:14,15,3,50:14:542:15,3,50:600,120,2011:-166.425,-121.215,-161.216,-160.754,-155.846,-204.368,-4.91616,0,-39.544,-34.3783 0|0:18:10,3,0,5:10:378:3,0,5:115,0,153:-8.63299,-2.1718,-32.3078,-11.6433,-33.2109,-42.6543,0,-21.5397,-30.9788,-29.4737 0|0:15:6,0,2,7:6:227:0,2,7:0,76,269:-20.2757,-22.0818,-40.6861,-15.8503,-34.4538,-33.8517,0,-18.605,-12.372,-16.4977 dDocent_Contig_3489 54 . T A 2168.11 . AB=0.365;ABP=34.6704;AC=3;AF=0.5;AN=6;AO=73;CIGAR=2X18M;DP=200;DPB=204.6;DPRA=0;EPP=161.528;EPPR=168.042;GTI=0;LEN=1;MEANALT=9.66667;MQM=60;MQMR=60;NS=3;NUMALT=4;ODDS=2.77556e-17;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=2897;QR=2734;RO=76;RPL=73;RPP=161.528;RPPR=168.042;RPR=0;RUN=1;SAF=73;SAP=161.528;SAR=0;SRF=76;SRP=168.042;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|1:124:58,0,3,1,53:58:2080:0,3,1,53:0,119,40,2109:-156.259,-173.719,-343.355,-163.922,-333.558,-332.655,-170.424,-340.06,-330.263,-339.759,0,-169.685,-159.887,-166.389,-153.73 0|1:17:2,1,4,1,7:2:76:1,4,1,7:40,156,39,270:-28.216,-25.5194,-31.4556,-15.9805,-18.9205,-21.0162,-25.6093,-28.5481,-19.0105,-31.5454,-6.61706,-9.55961,0,-9.64991,-10.7551 0|1:59:16,4,7,11,13:16:578:4,7,11,13:160,275,428,518:-37.8583,-29.4897,-75.4663,-20.0481,-54.0455,-65.1226,-7.48958,-41.4882,-32.0465,-51.3619,0,-34.0008,-24.5586,-11.9992,-43.273 dDocent_Contig_3490 17 . C G 35.9711 . AB=0.176471;ABP=18.4661;AC=1;AF=0.166667;AN=6;AO=3;CIGAR=1X3M1X;DP=42;DPB=42;DPRA=1.36;EPP=9.52472;EPPR=87.6977;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=1.73472e-18;PAIRED=0;PAIREDR=0.897436;PAO=0;PQA=0;PQR=0;PRO=0;QA=113;QR=1509;RO=39;RPL=0;RPP=9.52472;RPPR=87.6977;RPR=3;RUN=1;SAF=3;SAP=9.52472;SAR=0;SRF=39;SRP=87.6977;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|0:18:18,0:18:687:0:0:0,-5.41854,-62.1535 0|1:17:14,3:14:551:3:113:-5.4209,0,-44.814 0|0:7:7,0:7:271:0:0:0,-2.10721,-24.7531 dDocent_Contig_3491 9 . G A 9462.55 . AB=0.741477;ABP=181.293;AC=4;AF=0.666667;AN=6;AO=317;CIGAR=1X;DP=413;DPB=413;DPRA=0;EPP=691.367;EPPR=211.472;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=11924;QR=3687;RO=96;RPL=0;RPP=691.367;RPPR=211.472;RPR=317;RUN=1;SAF=317;SAP=691.367;SAR=0;SRF=96;SRP=211.472;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:215:46,169:46:1762:169:6390:-510.319,0,-94.1152 1/1:61:5,56:5:193:56:2118:-173.112,-0.62147,0 0/1:137:45,92:45:1732:92:3416:-266.346,0,-114.895 dDocent_Contig_3492 9 . A C 4883.61 . AB=0.0491803;ABP=326.061;AC=0;AF=0;AN=6;AO=9;CIGAR=3X;DP=340;DPB=340;DPRA=0;EPP=22.5536;EPPR=322.217;GTI=0;LEN=1;MEANALT=3;MQM=60;MQMR=60;NS=3;NUMALT=3;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=349;QR=5750;RO=147;RPL=0;RPP=22.5536;RPPR=322.217;RPR=9;RUN=1;SAF=9;SAP=22.5536;SAR=0;SRF=147;SRP=322.217;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|0:157:69,0,85,3:69:2718:0,85,3:0,3370,117:-256.617,-277.388,-500.994,0,-223.612,-198.024,-267.808,-491.414,-214.032,-490.511 0|0:96:29,4,52,11:29:1130:4,52,11:153,2060,434:-160.823,-156.998,-248.667,0,-80.3189,-77.2196,-133.843,-214.161,-57.1621,-223.404 0|0:87:49,5,28,5:49:1902:5,28,5:196,1108,189:-76.4434,-75.0758,-229.839,0,-140.155,-147.845,-75.7092,-215.858,-140.788,-230.471 dDocent_Contig_3493 158 . G T 197.124 . AB=0.171053;ABP=74.4403;AC=3;AF=0.5;AN=6;AO=13;CIGAR=1X;DP=76;DPB=76;DPRA=0;EPP=31.2394;EPPR=139.813;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=506;QR=2361;RO=63;RPL=13;RPP=31.2394;RPPR=139.813;RPR=0;RUN=1;SAF=0;SAP=31.2394;SAR=13;SRF=0;SRP=139.813;SRR=63;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:35:32,3:32:1204:3:119:-0.559133,0,-98.1197 0/1:18:15,3:15:550:3:116:-5.39848,0,-44.4163 0/1:23:16,7:16:607:7:271:-17.8316,0,-48.0452 dDocent_Contig_3494 12 . T A 55329 . AB=0.705382;ABP=1037.69;AC=3;AF=0.5;AN=6;AO=1992;CIGAR=1X;DP=2824;DPB=2824;DPRA=0;EPP=4328.58;EPPR=1783.62;GTI=0;LEN=1;MEANALT=2.33333;MQM=51.3624;MQMR=50.2768;NS=3;NUMALT=1;ODDS=0;PAIRED=0.59739;PAIREDR=0.543902;PAO=0;PQA=0;PQR=0;PRO=0;QA=79378;QR=32939;RO=820;RPL=0;RPP=4328.58;RPPR=1783.62;RPR=1992;RUN=1;SAF=1992;SAP=4328.58;SAR=0;SRF=820;SRP=1783.62;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:1186:376,805:376:15148:805:32105:-2175.52,0,-793.29 0/1:713:191,521:191:7604:521:20741:-1501.82,0,-411.724 0/1:925:253,666:253:10187:666:26532:-1861.09,0,-558.564 dDocent_Contig_3495 12 . C A 2752 . AB=0.113924;ABP=207.568;AC=0;AF=0;AN=6;AO=18;CIGAR=1X1M1X1M1X3M1X;DP=259;DPB=259;DPRA=0;EPP=42.0968;EPPR=161.528;GTI=0;LEN=1;MEANALT=6;MQM=57.7222;MQMR=60;NS=3;NUMALT=5;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=702;QR=2870;RO=73;RPL=0;RPP=42.0968;RPPR=161.528;RPR=18;RUN=1;SAF=18;SAP=42.0968;SAR=0;SRF=73;SRP=161.528;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|0:101:32,42,0,27,0,0:32:1256:42,0,27,0,0:1636,0,1050,0,0:-124.714,0,-90.6615,-134.347,-103.305,-237.644,-51.8894,-20.8499,-155.185,-147.057,-134.347,-103.305,-237.644,-155.185,-237.644,-134.347,-103.305,-237.644,-155.185,-237.644,-237.644 0|0:47:19,11,5,4,5,0:19:742:11,5,4,5,0:415,197,161,198,0:-28.2882,0,-57.6911,-17.8152,-44.8118,-77.3132,-21.1588,-48.1548,-65.9706,-80.9571,-17.7345,-44.7313,-62.547,-65.8901,-77.2327,-34.0078,-61.0024,-78.8183,-82.1612,-78.7379,-95.0088 0|0:111:22,31,13,33,4,7:22:872:31,13,33,4,7:1209,505,1308,158,282:-127.721,-34.9658,-97.4117,-92.8827,-65.2827,-160.747,-27.5994,0,-57.9167,-89.4438,-121.364,-93.7633,-151.68,-86.3975,-191.937,-111.101,-83.5007,-141.418,-76.1347,-169.898,-180.772 dDocent_Contig_3497 1 . N C 324.624 . AB=0;ABP=0;AC=4;AF=1;AN=4;AO=9;CIGAR=1X;DP=9;DPB=9;DPRA=0;EPP=22.5536;EPPR=0;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=0;NS=2;NUMALT=1;ODDS=0;PAIRED=0.888889;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=349;QR=0;RO=0;RPL=0;RPP=22.5536;RPPR=0;RPR=9;RUN=1;SAF=9;SAP=22.5536;SAR=0;SRF=0;SRP=0;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 1/1:8:0,8:0:0:8:310:-28.2637,-2.40824,0 ./.:.:.:.:.:.:.:. 1/1:1:0,1:0:0:1:39:-3.89656,-0.30103,0 dDocent_Contig_3498 34 . C G 4216.01 . AB=0.540146;ABP=6.84604;AC=3;AF=0.5;AN=6;AO=148;CIGAR=1X1M1X;DP=274;DPB=274;DPRA=0;EPP=324.388;EPPR=276.616;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=1.38778e-17;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=5655;QR=4856;RO=126;RPL=0;RPP=324.388;RPPR=276.616;RPR=148;RUN=1;SAF=148;SAP=324.388;SAR=0;SRF=126;SRP=276.616;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|1:149:67,82:67:2611:82:3152:-238.93,0,-190.289 0|1:58:32,26:32:1214:26:982:-71.2185,0,-92.086 0|1:67:27,40:27:1031:40:1521:-116.975,0,-72.9108 dDocent_Contig_3499 11 . G C 78.7595 . AB=0.128571;ABP=86.8912;AC=2;AF=0.333333;AN=6;AO=11;CIGAR=1X;DP=119;DPB=119;DPRA=0;EPP=26.8965;EPPR=237.529;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=434;QR=4203;RO=108;RPL=0;RPP=26.8965;RPPR=237.529;RPR=11;RUN=1;SAF=11;SAP=26.8965;SAR=0;SRF=108;SRP=237.529;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:49:47,2:47:1847:2:82:0,-6.97079,-158.658 0/1:53:46,7:46:1780:7:270:-8.70624,0,-144.457 0/1:17:15,2:15:576:2:82:-2.66217,0,-47.0497 dDocent_Contig_3500 8 . T A 5198.28 . AB=0.197345;ABP=902.069;AC=3;AF=0.5;AN=6;AO=223;CIGAR=2X1M3X2M1X;DP=1130;DPB=1127.78;DPRA=0;EPP=487.249;EPPR=1342.81;GTI=0;LEN=1;MEANALT=15.6667;MQM=59.9552;MQMR=60;NS=3;NUMALT=2;ODDS=0;PAIRED=0.991031;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=8655;QR=24161;RO=617;RPL=0;RPP=487.249;RPPR=1342.81;RPR=223;RUN=1;SAF=223;SAP=487.249;SAR=0;SRF=617;SRP=1342.81;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|1:691:373,64,134:373:14614:64,134:2487,5205:-315.393,-223.321,-1405.77,0,-997.358,-1161.38 0|1:78:34,15,21:34:1320:15,21:593,809:-56.1905,-17.6197,-121.567,0,-59.6558,-102.138 0|1:361:210,20,68:210:8227:20,68:778,2641:-153.768,-153.047,-823.527,0,-612.565,-656.032 dDocent_Contig_3501 9 . A G 669.743 . AB=0.471698;ABP=3.37904;AC=2;AF=0.333333;AN=6;AO=26;CIGAR=1X;DP=83;DPB=83;DPRA=0;EPP=59.4686;EPPR=126.784;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=0.615385;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=992;QR=2173;RO=57;RPL=0;RPP=59.4686;RPPR=126.784;RPR=26;RUN=1;SAF=26;SAP=59.4686;SAR=0;SRF=57;SRP=126.784;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:34:14,20:14:540:20:771:-59.4836,0,-38.7102 0/0:30:29,1:29:1101:1:39:0,-5.13434,-95.4992 0/1:19:14,5:14:532:5:182:-11.0135,0,-42.5034 dDocent_Contig_3502 7 . C A 174.328 . AB=0.158537;ABP=86.0559;AC=2;AF=0.333333;AN=6;AO=17;CIGAR=1X;DP=155;DPB=155;DPRA=0;EPP=39.9253;EPPR=294.051;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=0.971014;PAO=0;PQA=0;PQR=0;PRO=0;QA=654;QR=5281;RO=138;RPL=0;RPP=39.9253;RPPR=302.673;RPR=17;RUN=1;SAF=17;SAP=39.9253;SAR=0;SRF=137;SRP=294.051;SRR=1;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:73:69,4:69:2639:4:155:0,-7.64975,-223.375 0/1:39:31,8:31:1181:8:309:-16.4328,0,-94.8486 0/1:43:38,5:38:1461:5:190:-4.52245,0,-118.821 dDocent_Contig_3505 80 . A G 161.735 . AB=0.15493;ABP=76.4428;AC=3;AF=0.5;AN=6;AO=11;CIGAR=1X2M;DP=71;DPB=71;DPRA=0;EPP=26.8965;EPPR=124.613;GTI=0;LEN=1;MEANALT=1.33333;MQM=60;MQMR=60;NS=3;NUMALT=2;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=370;QR=1932;RO=56;RPL=11;RPP=26.8965;RPPR=124.613;RPR=0;RUN=1;SAF=11;SAP=26.8965;SAR=0;SRF=56;SRP=124.613;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|1:28:22,0,6:22:762:0,6:0,195:-9.44131,-16.064,-78.0127,0,-62.2782,-60.472 0|1:16:12,0,4:12:410:0,4:0,140:-8.12845,-11.7408,-45.0093,0,-33.6163,-32.4122 0|1:27:22,4,1:22:760:4,1:133,35:-4.12549,0,-60.544,-7.89692,-58.9001,-69.3592 dDocent_Contig_3506 41 . C T 99.615 . AB=0.140351;ABP=67.0497;AC=2;AF=0.333333;AN=6;AO=11;CIGAR=1X2M;DP=105;DPB=105;DPRA=0;EPP=26.8965;EPPR=198.443;GTI=0;LEN=1;MEANALT=1.33333;MQM=60;MQMR=60;NS=3;NUMALT=2;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=445;QR=3590;RO=90;RPL=0;RPP=26.8965;RPPR=198.443;RPR=11;RUN=1;SAF=11;SAP=26.8965;SAR=0;SRF=90;SRP=198.443;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|0:48:45,0,3:45:1779:0,3:0,122:0,-13.5463,-159.925,-3.07695,-149.861,-148.958 0|1:19:16,0,3:16:643:0,3:0,123:-5.74522,-10.5617,-63.5419,0,-53.3884,-52.4853 0|1:38:29,4,5:29:1168:4,5:164,200:-7.73896,-2.9281,-97.9947,0,-82.7249,-94.7569 dDocent_Contig_3507 72 . A C 5413.4 . AB=0.382102;ABP=88.0062;AC=3;AF=0.5;AN=6;AO=269;CIGAR=1X;DP=704;DPB=704;DPRA=0;EPP=587.136;EPPR=945.429;GTI=0;LEN=1;MEANALT=1.33333;MQM=60;MQMR=59.7742;NS=3;NUMALT=1;ODDS=0;PAIRED=0.00371747;PAIREDR=0.764977;PAO=0;PQA=0;PQR=0;PRO=0;QA=8423;QR=14132;RO=434;RPL=268;RPP=578.483;RPPR=15.5188;RPR=1;RUN=1;SAF=268;SAP=578.483;SAR=1;SRF=242;SRP=15.5188;SRR=192;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:220:149,71:149:4969:71:2265:-137.887,0,-380.828 0/1:210:116,94:116:3671:94:2903:-198.295,0,-267.39 0/1:274:169,104:169:5492:104:3255:-210.681,0,-411.937 dDocent_Contig_3508 37 . A C 45.9647 . AB=0.133333;ABP=38.0434;AC=1;AF=0.166667;AN=6;AO=6;CIGAR=1X;DP=89;DPB=89;DPRA=0.890625;EPP=16.0391;EPPR=183.243;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=0.891566;PAO=0;PQA=0;PQR=0;PRO=0;QA=243;QR=3192;RO=83;RPL=0;RPP=16.0391;RPPR=183.243;RPR=6;RUN=1;SAF=6;SAP=16.0391;SAR=0;SRF=83;SRP=183.243;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:30:26,4:26:981:4:164:-6.119,0,-79.5455 0/0:27:25,2:25:947:2:79:0,-0.630565,-78.0292 0/0:32:32,0:32:1264:0:0:0,-9.63296,-114.032 dDocent_Contig_3509 12 . T G 319.618 . AB=0.107981;ABP=571.651;AC=3;AF=0.5;AN=6;AO=46;CIGAR=1X;DP=426;DPB=426;DPRA=0;EPP=102.898;EPPR=828.17;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=0.884211;PAO=0;PQA=0;PQR=0;PRO=0;QA=1830;QR=15330;RO=380;RPL=0;RPP=102.898;RPPR=828.17;RPR=46;RUN=1;SAF=46;SAP=102.898;SAR=0;SRF=380;SRP=828.17;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:273:245,28:245:9894:28:1106:-17.6526,0,-807.59 0/1:38:31,7:31:1260:7:284:-14.4949,0,-102.225 0/1:115:104,11:104:4176:11:440:-5.33715,0,-341.168 dDocent_Contig_3510 108 . T A 228.468 . AB=0.354839;ABP=8.68415;AC=2;AF=0.333333;AN=6;AO=17;CIGAR=1X;DP=96;DPB=96;DPRA=0;EPP=39.9253;EPPR=174.557;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=597;QR=2637;RO=79;RPL=0;RPP=39.9253;RPPR=174.557;RPR=17;RUN=1;SAF=0;SAP=39.9253;SAR=17;SRF=0;SRP=174.557;SRR=79;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:65:59,6:59:1984:6:208:0,-0.50752,-159.771 0/1:13:7,6:7:210:6:214:-15.6944,0,-15.2804 0/1:18:13,5:13:443:5:175:-10.6748,0,-34.778 dDocent_Contig_3511 76 . T C 155.157 . AB=0.214286;ABP=32.7905;AC=1;AF=0.166667;AN=6;AO=16;CIGAR=1X;DP=161;DPB=161;DPRA=0;EPP=37.7539;EPPR=317.874;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=599;QR=5575;RO=145;RPL=16;RPP=37.7539;RPPR=317.874;RPR=0;RUN=1;SAF=16;SAP=37.7539;SAR=0;SRF=145;SRP=317.874;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:42:33,9:33:1302:9:326:-17.0386,0,-104.807 0/0:46:43,3:43:1663:3:118:0,-2.8458,-138.914 0/0:73:69,4:69:2610:4:155:0,-7.64975,-220.768 dDocent_Contig_3512 1 . N A 137.2 . AB=0;ABP=0;AC=4;AF=1;AN=4;AO=6;CIGAR=1X;DP=6;DPB=6;DPRA=0;EPP=16.0391;EPPR=0;GTI=0;LEN=1;MEANALT=1;MQM=24.3333;MQMR=0;NS=2;NUMALT=1;ODDS=0;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=210;QR=0;RO=0;RPL=0;RPP=16.0391;RPPR=0;RPR=6;RUN=1;SAF=0;SAP=16.0391;SAR=6;SRF=0;SRP=0;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 1/1:3:0,3:0:0:3:105:-6.53393,-0.90309,0 ./.:.:.:.:.:.:.:. 1/1:3:0,3:0:0:3:105:-6.88445,-0.90309,0 dDocent_Contig_3513 13 . C T 384.512 . AB=0.183099;ABP=64.9431;AC=2;AF=0.333333;AN=6;AO=13;CIGAR=1X1M2X;DP=71;DPB=71;DPRA=0;EPP=31.2394;EPPR=72.7387;GTI=0;LEN=1;MEANALT=3;MQM=46.6154;MQMR=58.6667;NS=3;NUMALT=4;ODDS=0;PAIRED=1;PAIREDR=0.972222;PAO=0;PQA=0;PQR=0;PRO=0;QA=505;QR=1415;RO=36;RPL=0;RPP=31.2394;RPPR=81.1833;RPR=13;RUN=1;SAF=13;SAP=31.2394;SAR=0;SRF=35;SRP=72.7387;SRR=1;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|1:32:15,8,1,1,7:15:593:8,1,1,7:308,32,26,281:-20.2955,0,-46.4027,-22.236,-46.2355,-70.74,-23.0515,-47.0492,-69.2777,-71.5527,-1.63899,-25.651,-47.8829,-48.6964,-48.3515 0|1:15:9,2,0,4,0:9:362:2,0,4,0:78,0,88,0:-3.65567,0,-29.3771,-6.36494,-29.9792,-36.2859,-0.852893,-24.4033,-30.7005,-29.4964,-6.36494,-29.9792,-36.2859,-30.7005,-36.2859 0|0:24:12,3,2,0,7:12:460:3,2,0,7:119,79,0,286:-19.9969,-14.006,-48.8491,-17.1096,-43.2499,-52.2562,-23.6093,-49.7521,-52.8582,-59.3603,0,-26.1395,-29.2464,-35.7503,-33.6431 dDocent_Contig_3514 51 . C T 263.519 . AB=0.121951;ABP=257.496;AC=2;AF=0.333333;AN=6;AO=49;CIGAR=1X;DP=495;DPB=495;DPRA=0;EPP=109.412;EPPR=969.316;GTI=0;LEN=1;MEANALT=1.33333;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=2.77556e-17;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=1945;QR=17877;RO=445;RPL=49;RPP=109.412;RPPR=969.316;RPR=0;RUN=1;SAF=49;SAP=109.412;SAR=0;SRF=445;SRP=969.316;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:290:266,24:266:10669:24:942:0,-2.22069,-874.386 0/1:57:52,5:52:2098:5:201:-1.31218,0,-171.834 0/1:148:127,20:127:5110:20:802:-28.1471,0,-415.414 dDocent_Contig_3515 85 . G A 129.778 . AB=0.291667;ABP=12.0581;AC=1;AF=0.166667;AN=6;AO=7;CIGAR=1X1M1X;DP=61;DPB=61;DPRA=1.2973;EPP=18.2106;EPPR=120.27;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=241;QR=1853;RO=54;RPL=7;RPP=18.2106;RPPR=120.27;RPR=0;RUN=1;SAF=7;SAP=18.2106;SAR=0;SRF=54;SRP=120.27;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|0:29:29,0:29:994:0:0:0,-8.72987,-89.7695 0|0:8:8,0:8:277:0:0:0,-2.40824,-25.2666 0|1:24:17,7:17:582:7:241:-14.8017,0,-45.4793 dDocent_Contig_3516 11 . T A 117.534 . AB=0.0957746;ABP=506.847;AC=1;AF=0.166667;AN=6;AO=37;CIGAR=1X;DP=540;DPB=540;DPRA=0;EPP=83.3548;EPPR=1095.26;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=1453;QR=20081;RO=503;RPL=0;RPP=83.3548;RPPR=1095.26;RPR=37;RUN=1;SAF=37;SAP=83.3548;SAR=0;SRF=503;SRP=1095.26;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:355:321,34:321:12807:34:1332:-13.2763,0,-1044.82 0/0:44:42,2:42:1688:2:80:0,-5.65374,-144.551 0/0:141:140,1:140:5586:1:41:0,-38.3507,-498.45 dDocent_Contig_3517 13 . C A 352.289 . AB=0.0793651;ABP=99.8304;AC=0;AF=0;AN=6;AO=6;CIGAR=3X1M2X1M;DP=87;DPB=87;DPRA=0;EPP=16.0391;EPPR=126.784;GTI=0;LEN=1;MEANALT=3.66667;MQM=43;MQMR=60;NS=3;NUMALT=3;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=240;QR=2241;RO=57;RPL=0;RPP=16.0391;RPPR=126.784;RPR=6;RUN=1;SAF=6;SAP=16.0391;SAR=0;SRF=57;SRP=126.784;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|0:34:21,1,3,8:21:840:1,3,8:40,121,321:-20.1511,-23.3328,-92.2362,-16.4932,-82.5622,-84.7989,0,-66.0874,-59.2516,-66.819 0|0:29:14,4,2,7:14:554:4,2,7:160,81,277:-18.6006,-10.2555,-54.6602,-16.131,-49.1834,-61.1375,0,-33.0645,-38.9395,-43.5139 0|0:24:22,1,0,0:22:847:1,0,0:40,0,0:0,-3.48809,-72.7119,-6.62266,-73.013,-76.153,-6.62266,-73.013,-76.153,-76.153 dDocent_Contig_3518 26 . T C 2882.21 . AB=0.69403;ABP=46.8287;AC=3;AF=0.5;AN=6;AO=93;CIGAR=1X;DP=134;DPB=134;DPRA=0;EPP=204.957;EPPR=92.0407;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=0.913978;PAIREDR=0.804878;PAO=0;PQA=0;PQR=0;PRO=0;QA=3703;QR=1658;RO=41;RPL=0;RPP=204.957;RPPR=92.0407;RPR=93;RUN=1;SAF=93;SAP=204.957;SAR=0;SRF=41;SRP=92.0407;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:54:23,31:23:928:31:1258:-97.2305,0,-67.5681 0/1:20:6,14:6:243:14:543:-43.1876,0,-16.2274 0/1:60:12,48:12:487:48:1902:-153.326,0,-26.1188 dDocent_Contig_3519 42 . G C 1515.42 . 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T C 269.89 . AB=0.0971223;ABP=394.938;AC=1;AF=0.166667;AN=6;AO=68;CIGAR=8M1X1M;DP=933;DPB=948.4;DPRA=0;EPP=96.1281;EPPR=418.067;GTI=0;LEN=1;MEANALT=13.6667;MQM=60;MQMR=59.9986;NS=3;NUMALT=2;ODDS=1.11022e-16;PAIRED=0.661765;PAIREDR=0.15208;PAO=0;PQA=0;PQR=602.5;PRO=17;QA=2699;QR=24548;RO=697;RPL=0;RPP=150.67;RPPR=1516.53;RPR=68;RUN=1;SAF=61;SAP=96.1281;SAR=7;SRF=166;SRP=418.067;SRR=531;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|0:461:358,15,29:358:12534:15,29:584,1170:0,-59.7684,-1074.98,-11.3176,-983.047,-1022.32 0|0:194:146,7,12:146:5245:7,12:251,472:0,-23.4853,-449.199,-5.12438,-412.482,-429.338 0|1:278:193,20,27:193:6769:20,27:776,1057:-28.8129,-23.1498,-567.918,0,-487.027,-542.662 dDocent_Contig_3523 38 . T C 6331.65 . AB=0.365204;ABP=103.701;AC=3;AF=0.5;AN=6;AO=233;CIGAR=1X;DP=638;DPB=638;DPRA=0;EPP=508.963;EPPR=880.285;GTI=0;LEN=1;MEANALT=1.33333;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=2.77556e-17;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=9229;QR=16173;RO=404;RPL=0;RPP=508.963;RPPR=880.285;RPR=233;RUN=1;SAF=233;SAP=508.963;SAR=0;SRF=404;SRP=880.285;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:397:264,132:264:10586:132:5246:-352.378,0,-832.405 0/1:75:35,40:35:1379:40:1547:-116.891,0,-101.796 0/1:166:105,61:105:4208:61:2436:-169.419,0,-328.704 dDocent_Contig_3524 26 . G A 1336.76 . AB=0.246809;ABP=133.862;AC=3;AF=0.5;AN=6;AO=58;CIGAR=1X;DP=235;DPB=235;DPRA=0;EPP=128.956;EPPR=387.361;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=2322;QR=7063;RO=177;RPL=0;RPP=128.956;RPPR=387.361;RPR=58;RUN=1;SAF=58;SAP=128.956;SAR=0;SRF=177;SRP=387.361;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:110:86,24:86:3459:24:956:-53.2269,0,-278.229 0/1:22:10,12:10:403:12:482:-37.1082,0,-30.0063 0/1:103:81,22:81:3201:22:884:-48.8633,0,-257.149 dDocent_Contig_3525 12 . C T 4762.28 . AB=0.173913;ABP=45.4956;AC=0;AF=0;AN=6;AO=12;CIGAR=2X;DP=192;DPB=192;DPRA=0;EPP=29.068;EPPR=50.7827;GTI=0;LEN=1;MEANALT=2.5;MQM=60;MQMR=60;NS=3;NUMALT=3;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=462;QR=879;RO=22;RPL=0;RPP=29.068;RPPR=50.7827;RPR=12;RUN=1;SAF=12;SAP=29.068;SAR=0;SRF=22;SRP=50.7827;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|0:89:7,0,7,75:7:282:0,7,75:0,279,2958:-241.232,-243.34,-266.583,-220.364,-243.608,-241.5,0,-23.2446,-0.271845,-0.667373 0|0:46:12,8,4,22:12:476:8,4,22:321,161,870:-67.9747,-45.1368,-81.9101,-58.3176,-71.0489,-96.2949,0,-12.7289,-25.9096,-32.5563 0|0:57:3,4,0,50:3:121:4,0,50:141,0,2003:-169.201,-158.633,-167.403,-170.104,-168.607,-180.078,-5.05574,-3.6063,-15.0515,0 dDocent_Contig_3526 7 . C A 1503.21 . AB=0.444444;ABP=6.38815;AC=3;AF=0.5;AN=6;AO=56;CIGAR=1X;DP=126;DPB=126;DPRA=0;EPP=124.613;EPPR=155.013;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=2142;QR=2685;RO=70;RPL=0;RPP=124.613;RPPR=155.013;RPR=56;RUN=1;SAF=56;SAP=124.613;SAR=0;SRF=70;SRP=155.013;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:92:48,44:48:1842:44:1682:-123.946,0,-138.335 0/1:10:6,4:6:229:4:152:-11.0393,0,-17.965 0/1:24:16,8:16:614:8:308:-20.8576,0,-48.3741 dDocent_Contig_3528 22 . T C 91.0049 . AB=0.159091;ABP=47.4268;AC=2;AF=0.333333;AN=6;AO=13;CIGAR=1X;DP=138;DPB=138;DPRA=0;EPP=31.2394;EPPR=272.273;GTI=0;LEN=1;MEANALT=1.33333;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=0;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=522;QR=4943;RO=124;RPL=0;RPP=31.2394;RPPR=272.273;RPR=13;RUN=1;SAF=13;SAP=31.2394;SAR=0;SRF=124;SRP=272.273;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:94:87,6:87:3480:6:243:0,-6.15694,-290.981 0/1:14:10,4:10:398:4:163:-10.844,0,-31.9628 0/1:30:27,3:27:1065:3:116:-1.78538,0,-87.1026 dDocent_Contig_3529 17 . C A 5429.97 . AB=0.567823;ABP=15.6761;AC=3;AF=0.5;AN=6;AO=180;CIGAR=1X;DP=317;DPB=317;DPRA=0;EPP=393.875;EPPR=300.502;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=7150;QR=5508;RO=137;RPL=0;RPP=393.875;RPPR=300.502;RPR=180;RUN=1;SAF=180;SAP=393.875;SAR=0;SRF=137;SRP=300.502;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:200:87,113:87:3494:113:4522:-346.701,0,-254.282 0/1:38:15,23:15:607:23:876:-67.6958,0,-43.528 0/1:79:35,44:35:1407:44:1752:-134.123,0,-103.102 dDocent_Contig_3530 46 . T C 3626.5 . AB=0.636364;ABP=31.4368;AC=4;AF=0.666667;AN=6;AO=112;CIGAR=1M1X5M;DP=176;DPB=183.714;DPRA=0;EPP=246.215;EPPR=23.254;GTI=0;LEN=1;MEANALT=2.33333;MQM=60;MQMR=60;NS=3;NUMALT=4;ODDS=2.77556e-17;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=4471;QR=1146;RO=31;RPL=112;RPP=246.215;RPPR=23.254;RPR=0;RUN=1;SAF=112;SAP=246.215;SAR=0;SRF=31;SRP=70.3259;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 1|1:82:10,12,0,11,49:10:372:12,0,11,49:480,0,397,1949:-166.575,-130.045,-156.871,-169.585,-160.483,-200.024,-137.194,-128.091,-167.632,-164.321,-9.11291,0,-39.5515,-7.1633,-24.8011 0|1:43:14,0,3,0,26:14:499:0,3,0,26:0,87,0,1039:-81.4903,-85.7047,-126.36,-79.6043,-120.254,-119.351,-85.7047,-126.36,-120.254,-126.36,0,-40.744,-34.6461,-40.744,-32.9172 0|1:51:7,0,0,7,37:7:275:0,0,7,37:0,0,265,1483:-120.09,-122.198,-144.815,-122.198,-144.815,-144.815,-100.476,-123.093,-123.093,-120.986,0,-22.6251,-22.6251,-0.907329,-11.487 dDocent_Contig_3531 143 . T C 93.2113 . AB=0.307692;ABP=7.18621;AC=1;AF=0.166667;AN=6;AO=4;CIGAR=1X;DP=69;DPB=69;DPRA=0.464286;EPP=11.6962;EPPR=144.156;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=163;QR=2586;RO=65;RPL=0;RPP=11.6962;RPPR=144.156;RPR=4;RUN=1;SAF=0;SAP=11.6962;SAR=4;SRF=0;SRP=144.156;SRR=65;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:46:46,0:46:1847:0:0:0,-13.8474,-166.439 0/0:10:10,0:10:390:0:0:0,-3.0103,-35.4541 0/1:13:9,4:9:349:4:163:-11.145,0,-27.8536 dDocent_Contig_3533 38 . G A 3190.42 . AB=0.638037;ABP=29.9872;AC=3;AF=0.5;AN=6;AO=104;CIGAR=1X;DP=163;DPB=163;DPRA=0;EPP=228.843;EPPR=131.127;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=6.93889e-18;PAIRED=0.971154;PAIREDR=0.898305;PAO=0;PQA=0;PQR=0;PRO=0;QA=4143;QR=2360;RO=59;RPL=0;RPP=228.843;RPPR=131.127;RPR=104;RUN=1;SAF=104;SAP=228.843;SAR=0;SRF=59;SRP=131.127;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:92:27,65:27:1086:65:2601:-206.527,0,-70.3313 0/1:35:14,21:14:551:21:818:-63.3906,0,-39.3947 0/1:36:18,18:18:723:18:724:-54.6472,0,-54.5593 dDocent_Contig_3534 110 . C T 64.076 . AB=0.266667;ABP=10.1038;AC=1;AF=0.166667;AN=6;AO=4;CIGAR=2X;DP=118;DPB=118;DPRA=0.291262;EPP=11.6962;EPPR=250.558;GTI=0;LEN=1;MEANALT=1;MQM=54;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=0;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=138;QR=3892;RO=114;RPL=0;RPP=11.6962;RPPR=250.558;RPR=4;RUN=1;SAF=0;SAP=11.6962;SAR=4;SRF=0;SRP=250.558;SRR=114;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|0:69:69,0:69:2344:0:0:0,-20.7711,-211.223 0|1:15:11,4:11:378:4:138:-8.23151,0,-29.836 0|0:34:34,0:34:1170:0:0:0,-10.235,-105.605 dDocent_Contig_3535 10 . A G 43.9596 . AB=0.121951;ABP=53.9075;AC=1;AF=0.166667;AN=6;AO=13;CIGAR=1X;DP=330;DPB=330;DPRA=0;EPP=31.2394;EPPR=691.367;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=6.93889e-18;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=520;QR=12647;RO=317;RPL=0;RPP=31.2394;RPPR=691.367;RPR=13;RUN=1;SAF=13;SAP=31.2394;SAR=0;SRF=317;SRP=691.367;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:156:155,1:155:6222:1:32:0,-43.7614,-556.521 0/1:41:36,5:36:1426:5:202:-6.21985,0,-116.248 0/0:133:126,7:126:4999:7:286:0,-13.9222,-423.679 dDocent_Contig_3536 1 . N G 77.8076 . AB=0;ABP=0;AC=2;AF=1;AN=2;AO=2;CIGAR=1X;DP=2;DPB=2;DPRA=0;EPP=7.35324;EPPR=0;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=0;NS=1;NUMALT=1;ODDS=5.99146;PAIRED=1;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=82;QR=0;RO=0;RPL=0;RPP=7.35324;RPPR=0;RPR=2;RUN=1;SAF=2;SAP=7.35324;SAR=0;SRF=0;SRP=0;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 1/1:2:0,2:0:0:2:82:-7.77968,-0.60206,0 ./.:.:.:.:.:.:.:. ./.:.:.:.:.:.:.:. dDocent_Contig_3537 98 . N T 43.7094 . AB=0;ABP=0;AC=2;AF=1;AN=2;AO=2;CIGAR=1X;DP=2;DPB=2;DPRA=0;EPP=7.35324;EPPR=0;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=0;NS=1;NUMALT=1;ODDS=5.99146;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=46;QR=0;RO=0;RPL=2;RPP=7.35324;RPPR=0;RPR=0;RUN=1;SAF=2;SAP=7.35324;SAR=0;SRF=0;SRP=0;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL ./.:.:.:.:.:.:.:. ./.:.:.:.:.:.:.:. 1/1:2:0,2:0:0:2:46:-4.36984,-0.60206,0 dDocent_Contig_3538 107 . N G 66.4848 . AB=0;ABP=0;AC=2;AF=1;AN=2;AO=2;CIGAR=1X;DP=2;DPB=2;DPRA=0;EPP=7.35324;EPPR=0;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=0;NS=1;NUMALT=1;ODDS=5.99146;PAIRED=1;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=70;QR=0;RO=0;RPL=0;RPP=7.35324;RPPR=0;RPR=2;RUN=1;SAF=0;SAP=7.35324;SAR=2;SRF=0;SRP=0;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL ./.:.:.:.:.:.:.:. 1/1:2:0,2:0:0:2:70:-6.6474,-0.60206,0 ./.:.:.:.:.:.:.:. dDocent_Contig_3539 32 . C A 2437.58 . AB=0.165414;ABP=132.335;AC=0;AF=0;AN=6;AO=22;CIGAR=1X1M1X;DP=161;DPB=161;DPRA=0;EPP=50.7827;EPPR=128.956;GTI=0;LEN=1;MEANALT=2;MQM=60;MQMR=60;NS=3;NUMALT=2;ODDS=2.77556e-17;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=874;QR=2260;RO=58;RPL=0;RPP=50.7827;RPPR=128.956;RPR=22;RUN=1;SAF=22;SAP=50.7827;SAR=0;SRF=58;SRP=128.956;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|0:87:35,14,38:35:1350:14,38:555,1510:-113.773,-78.6279,-185.253,0,-65.1529,-99.3979 0|0:28:13,0,15:13:515:0,15:0,594:-45.3662,-49.2796,-91.6674,0,-42.7835,-38.268 0|0:46:10,8,28:10:395:8,28:319,1130:-90.1415,-66.8828,-96.9761,0,-6.23008,-24.0729 dDocent_Contig_3542 7 . C T 294.502 . AB=0.245902;ABP=37.2199;AC=3;AF=0.5;AN=6;AO=15;CIGAR=1X;DP=61;DPB=61;DPRA=0;EPP=35.5824;EPPR=98.5551;GTI=0;LEN=1;MEANALT=1.66667;MQM=60;MQMR=59.8636;NS=3;NUMALT=1;ODDS=0;PAIRED=0.866667;PAIREDR=0.886364;PAO=0;PQA=0;PQR=0;PRO=0;QA=582;QR=1679;RO=44;RPL=0;RPP=35.5824;RPPR=98.5551;RPR=15;RUN=1;SAF=15;SAP=35.5824;SAR=0;SRF=44;SRP=98.5551;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:35:26,9:26:1002:9:350:-21.3253,0,-79.9546 0/1:15:11,3:11:404:3:117:-6.3063,0,-32.0958 0/1:11:7,3:7:273:3:115:-7.3415,0,-21.5554 dDocent_Contig_3543 16 . T G 100.814 . AB=0.102703;ABP=256.65;AC=3;AF=0.5;AN=6;AO=19;CIGAR=1X;DP=185;DPB=185;DPRA=0;EPP=44.2683;EPPR=361.303;GTI=0;LEN=1;MEANALT=1.33333;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=1.38778e-17;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=763;QR=6655;RO=165;RPL=0;RPP=44.2683;RPPR=361.303;RPR=19;RUN=1;SAF=19;SAP=44.2683;SAR=0;SRF=165;SRP=361.303;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:113:102,10:102:4109:10:397:-1.9707,0,-335.653 0/1:25:23,2:23:923:2:82:-0.253928,0,-75.8462 0/1:47:40,7:40:1623:7:284:-11.7856,0,-132.147 dDocent_Contig_3544 107 . N G 69.3238 . AB=0;ABP=0;AC=2;AF=1;AN=2;AO=2;CIGAR=1X;DP=2;DPB=2;DPRA=0;EPP=7.35324;EPPR=0;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=0;NS=1;NUMALT=1;ODDS=5.99146;PAIRED=1;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=73;QR=0;RO=0;RPL=0;RPP=7.35324;RPPR=0;RPR=2;RUN=1;SAF=0;SAP=7.35324;SAR=2;SRF=0;SRP=0;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL ./.:.:.:.:.:.:.:. ./.:.:.:.:.:.:.:. 1/1:2:0,2:0:0:2:73:-6.9313,-0.60206,0 dDocent_Contig_3546 23 . C A 52.5956 . AB=0.3;ABP=6.48466;AC=1;AF=0.166667;AN=6;AO=3;CIGAR=1X;DP=23;DPB=23;DPRA=1.53846;EPP=9.52472;EPPR=46.4397;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=105;QR=797;RO=20;RPL=0;RPP=9.52472;RPPR=46.4397;RPR=3;RUN=1;SAF=3;SAP=9.52472;SAR=0;SRF=20;SRP=46.4397;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:10:7,3:7:275:3:105:-6.7824,0,-22.1079 0/0:7:7,0:7:284:0:0:0,-2.10721,-25.9338 0/0:6:6,0:6:238:0:0:0,-1.80618,-21.7938 dDocent_Contig_3547 25 . C T 601.757 . AB=0.267327;ABP=50.5032;AC=2;AF=0.333333;AN=6;AO=27;CIGAR=1X;DP=107;DPB=107;DPRA=8.41667;EPP=61.6401;EPPR=176.728;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=1038;QR=3164;RO=80;RPL=0;RPP=61.6401;RPPR=176.728;RPR=27;RUN=1;SAF=27;SAP=61.6401;SAR=0;SRF=80;SRP=176.728;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:78:57,21:57:2261:21:796:-48.4647,0,-180.185 0/0:6:6,0:6:237:0:0:0,-1.80618,-21.703 0/1:23:17,6:17:666:6:242:-15.2338,0,-53.3451 dDocent_Contig_3548 12 . T G 5722.76 . AB=0.505556;ABP=3.10681;AC=3;AF=0.5;AN=6;AO=182;CIGAR=1X6M;DP=360;DPB=342;DPRA=0;EPP=398.218;EPPR=141.985;GTI=0;LEN=1;MEANALT=5.33333;MQM=60;MQMR=60;NS=3;NUMALT=4;ODDS=0;PAIRED=0.989011;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=7251;QR=2533;RO=64;RPL=0;RPP=398.218;RPPR=141.985;RPR=182;RUN=1;SAF=182;SAP=398.218;SAR=0;SRF=64;SRP=141.985;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|1:210:39,23,16,35,90:39:1539:23,16,35,90:916,610,1357,3596:-284.439,-220.753,-340.45,-246.154,-297.348,-367.957,-184.71,-235.904,-261.304,-300.794,0,-51.1949,-76.5963,-15.152,-99.5293 0|1:49:6,2,1,4,36:6:238:2,1,4,36:77,41,158,1442:-116.991,-112.475,-131.465,-115.413,-128.682,-134.703,-105.795,-119.065,-122.003,-124.183,0,-13.2724,-16.2077,-6.59122,-8.75589 0|1:101:19,16,1,6,56:19:756:16,1,6,56:633,38,240,2213:-176.369,-129.996,-187.427,-178.972,-189.127,-240.918,-162.32,-172.475,-221.451,-222.761,0,-10.1559,-59.1311,-42.4787,-45.3896 dDocent_Contig_3549 107 . N G 481.927 . AB=0;ABP=0;AC=6;AF=1;AN=6;AO=21;CIGAR=1X;DP=22;DPB=22;DPRA=0;EPP=48.6112;EPPR=0;GTI=0;LEN=1;MEANALT=1.33333;MQM=60;MQMR=0;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=523;QR=0;RO=0;RPL=0;RPP=48.6112;RPPR=0;RPR=21;RUN=1;SAF=0;SAP=48.6112;SAR=21;SRF=0;SRP=0;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 1/1:11:0,10:0:0:10:252:-22.8408,-3.0103,0 1/1:4:0,4:0:0:4:94:-8.69374,-1.20412,0 1/1:7:0,7:0:0:7:177:-16.181,-2.10721,0 dDocent_Contig_3550 12 . G A 3565.29 . AB=0.454918;ABP=7.31765;AC=4;AF=0.666667;AN=6;AO=111;CIGAR=1X2M;DP=244;DPB=244;DPRA=0;EPP=244.044;EPPR=170.214;GTI=0;LEN=1;MEANALT=2;MQM=60;MQMR=60;NS=3;NUMALT=2;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=4434;QR=3002;RO=77;RPL=0;RPP=244.044;RPPR=170.214;RPR=111;RUN=1;SAF=111;SAP=244.044;SAR=0;SRF=77;SRP=170.214;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|1:118:42,19,57:42:1643:19,57:749,2284:-175.521,-126.551,-255.914,0,-73.468,-117.925 1|1:34:5,11,18:5:193:11,18:436,706:-76.5952,-42.2108,-54.7485,-20.048,0,-30.4766 0|1:92:30,26,36:30:1166:26,36:1052,1444:-109.935,-32.2256,-120.2,0,-9.05219,-84.9612 dDocent_Contig_3551 170 . C A 300.37 . AB=0.253968;ABP=36.1339;AC=2;AF=0.333333;AN=6;AO=18;CIGAR=1X;DP=91;DPB=91;DPRA=0;EPP=42.0968;EPPR=161.528;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=644;QR=2818;RO=73;RPL=18;RPP=42.0968;RPPR=161.528;RPR=0;RUN=1;SAF=0;SAP=42.0968;SAR=18;SRF=0;SRP=161.528;SRR=73;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:46:35,11:35:1363:11:393:-21.8516,0,-109.072 0/1:17:12,5:12:435:5:183:-11.7082,0,-34.3647 0/0:28:26,2:26:1020:2:68:0,-1.9732,-85.6433 dDocent_Contig_3552 17 . T C 270.976 . AB=0.161905;ABP=107.262;AC=2;AF=0.333333;AN=6;AO=26;CIGAR=1X;DP=254;DPB=254;DPRA=0;EPP=59.4686;EPPR=498.106;GTI=0;LEN=1;MEANALT=1;MQM=53.2308;MQMR=60;NS=3;NUMALT=1;ODDS=1.38778e-17;PAIRED=0;PAIREDR=0.995614;PAO=0;PQA=0;PQR=0;PRO=0;QA=1040;QR=9062;RO=228;RPL=0;RPP=59.4686;RPPR=498.106;RPR=26;RUN=1;SAF=26;SAP=59.4686;SAR=0;SRF=228;SRP=498.106;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:149:140,9:140:5555:9:353:0,-12.8232,-467.741 0/1:48:42,6:42:1688:6:245:-7.86765,0,-137.694 0/1:57:46,11:46:1819:11:442:-22.7528,0,-146.759 dDocent_Contig_3553 7 . G C 5879.82 . AB=0.496314;ABP=3.05832;AC=3;AF=0.5;AN=6;AO=202;CIGAR=1X1M;DP=407;DPB=407;DPRA=0;EPP=441.648;EPPR=309.188;GTI=0;LEN=1;MEANALT=3.66667;MQM=59.9406;MQMR=60;NS=3;NUMALT=2;ODDS=0;PAIRED=0.935644;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=7747;QR=4486;RO=141;RPL=0;RPP=441.648;RPPR=309.188;RPR=202;RUN=1;SAF=202;SAP=441.648;SAR=0;SRF=141;SRP=309.188;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|1:165:41,22,98:41:1151:22,98:847,3758:-296.114,-238.91,-323.476,0,-21.5901,-61.6715 0|1:124:65,7,50:65:2227:7,50:257,1912:-137.386,-135.946,-314.579,0,-159.775,-165.734 0|1:118:35,26,54:35:1108:26,54:992,2077:-160.005,-89.1537,-170.447,0,-7.70352,-72.8649 dDocent_Contig_3554 34 . G A 54.9419 . AB=0.181818;ABP=22.3561;AC=1;AF=0.166667;AN=6;AO=4;CIGAR=1X;DP=63;DPB=63;DPRA=1.07317;EPP=11.6962;EPPR=131.127;GTI=0;LEN=1;MEANALT=1;MQM=56;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=151;QR=2331;RO=59;RPL=0;RPP=11.6962;RPPR=131.127;RPR=4;RUN=1;SAF=4;SAP=11.6962;SAR=0;SRF=59;SRP=131.127;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:21:21,0:21:836:0:0:0,-6.32163,-75.5476 0/1:22:18,4:18:703:4:151:-7.3181,0,-56.9736 0/0:20:20,0:20:792:0:0:0,-6.0206,-71.5931 dDocent_Contig_3555 25 . T G 454.969 . AB=0.164894;ABP=186.384;AC=3;AF=0.5;AN=6;AO=31;CIGAR=1X;DP=188;DPB=188;DPRA=0;EPP=70.3259;EPPR=343.931;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=1184;QR=6071;RO=157;RPL=0;RPP=70.3259;RPPR=343.931;RPR=31;RUN=1;SAF=31;SAP=70.3259;SAR=0;SRF=157;SRP=343.931;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:84:73,11:73:2862:11:420:-12.8637,0,-232.429 0/1:48:38,10:38:1449:10:389:-20.9164,0,-116.229 0/1:56:46,10:46:1760:10:375:-17.2396,0,-141.784 dDocent_Contig_3556 65 . A T 190.417 . AB=0.111111;ABP=286.749;AC=3;AF=0.5;AN=6;AO=24;CIGAR=1X;DP=216;DPB=216;DPRA=0;EPP=55.1256;EPPR=419.933;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=966;QR=7608;RO=192;RPL=24;RPP=55.1256;RPPR=419.933;RPR=0;RUN=1;SAF=24;SAP=55.1256;SAR=0;SRF=192;SRP=419.933;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:119:104,15:104:4157:15:605:-18.9653,0,-338.276 0/1:24:21,3:21:842:3:116:-3.59156,0,-68.8697 0/1:73:67,6:67:2609:6:245:-0.454283,0,-212.968 dDocent_Contig_3558 52 . G A 1224.92 . AB=0.410714;ABP=10.7656;AC=3;AF=0.5;AN=6;AO=46;CIGAR=1X;DP=112;DPB=112;DPRA=0;EPP=102.898;EPPR=146.327;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=1786;QR=2645;RO=66;RPL=46;RPP=102.898;RPPR=146.327;RPR=0;RUN=1;SAF=46;SAP=102.898;SAR=0;SRF=66;SRP=146.327;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:55:29,26:29:1170:26:1021:-75.6233,0,-89.0199 0/1:14:6,8:6:238:8:313:-24.3176,0,-17.5781 0/1:43:31,12:31:1237:12:452:-28.0736,0,-98.6567 dDocent_Contig_3559 15 . C T 2203.55 . AB=0.685714;ABP=34.4656;AC=3;AF=0.5;AN=6;AO=72;CIGAR=1X;DP=105;DPB=105;DPRA=0;EPP=159.356;EPPR=74.6689;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=0.972222;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=2851;QR=1316;RO=33;RPL=0;RPP=159.356;RPPR=74.6689;RPR=72;RUN=1;SAF=72;SAP=159.356;SAR=0;SRF=33;SRP=74.6689;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:44:14,30:14:547:30:1206:-95.5672,0,-36.3151 0/1:26:6,20:6:240:20:798:-64.3096,0,-14.1483 0/1:35:13,22:13:529:22:847:-66.0013,0,-37.4208 dDocent_Contig_3560 21 . G A 94.1702 . AB=0.208333;ABP=20.744;AC=2;AF=0.333333;AN=6;AO=5;CIGAR=1X;DP=31;DPB=31;DPRA=1.71429;EPP=13.8677;EPPR=59.4686;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=202;QR=1030;RO=26;RPL=0;RPP=13.8677;RPPR=59.4686;RPR=5;RUN=1;SAF=5;SAP=13.8677;SAR=0;SRF=26;SRP=59.4686;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:11:10,1:10:403:1:38:-0.485939,0,-33.3169 0/1:13:9,4:9:360:4:164:-11.2365,0,-28.8494 0/0:7:7,0:7:267:0:0:0,-2.10721,-24.3871 dDocent_Contig_3561 22 . A C 3758.97 . AB=0.6875;ABP=56.7542;AC=3;AF=0.5;AN=6;AO=121;CIGAR=1X;DP=176;DPB=176;DPRA=0;EPP=265.758;EPPR=122.441;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=1.38778e-17;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=4819;QR=2172;RO=55;RPL=0;RPP=265.758;RPPR=122.441;RPR=121;RUN=1;SAF=121;SAP=265.758;SAR=0;SRF=55;SRP=122.441;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:89:33,56:33:1291:56:2257:-176.499,0,-89.6665 0/1:30:4,26:4:156:26:1006:-81.8058,0,-5.38503 0/1:57:18,39:18:725:39:1556:-123.115,0,-48.4149 dDocent_Contig_3562 33 . A C 187.946 . AB=0.266667;ABP=17.1973;AC=1;AF=0.166667;AN=6;AO=8;CIGAR=1X;DP=64;DPB=64;DPRA=1.76471;EPP=20.3821;EPPR=124.613;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=1.73472e-18;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=322;QR=2204;RO=56;RPL=0;RPP=20.3821;RPPR=124.613;RPR=8;RUN=1;SAF=8;SAP=20.3821;SAR=0;SRF=56;SRP=124.613;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:30:22,8:22:859:8:322:-20.3174,0,-68.5757 0/0:16:16,0:16:631:0:0:0,-4.81648,-57.1222 0/0:18:18,0:18:714:0:0:0,-5.41854,-64.5852 dDocent_Contig_3563 30 . C A 50.0061 . AB=0.166667;ABP=26.1727;AC=1;AF=0.166667;AN=6;AO=4;CIGAR=1X2M1X;DP=71;DPB=71;DPRA=1.02128;EPP=3.0103;EPPR=148.499;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=1.73472e-18;PAIRED=0;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=152;QR=2662;RO=67;RPL=0;RPP=11.6962;RPPR=148.499;RPR=4;RUN=1;SAF=2;SAP=3.0103;SAR=2;SRF=67;SRP=148.499;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|0:40:40,0:40:1605:0:0:0,-12.0412,-144.682 0|0:7:7,0:7:283:0:0:0,-2.10721,-25.8436 0|1:24:20,4:20:774:4:152:-6.8245,0,-62.7506 dDocent_Contig_3564 10 . A C 755.068 . AB=0.244444;ABP=79.5909;AC=3;AF=0.5;AN=6;AO=33;CIGAR=1X;DP=135;DPB=135;DPRA=0;EPP=74.6689;EPPR=224.5;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=1340;QR=4069;RO=102;RPL=0;RPP=74.6689;RPPR=224.5;RPR=33;RUN=1;SAF=33;SAP=74.6689;SAR=0;SRF=102;SRP=224.5;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:66:48,18:48:1934:18:730:-46.1563,0,-154.388 0/1:23:20,3:20:798:3:122:-4.4488,0,-65.2118 0/1:46:34,12:34:1337:12:488:-30.4241,0,-106.744 dDocent_Contig_3565 62 . G A 38.6983 . AB=0.16129;ABP=33.9012;AC=2;AF=0.333333;AN=6;AO=5;CIGAR=1X;DP=62;DPB=62;DPRA=0.5;EPP=13.8677;EPPR=126.784;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=177;QR=2024;RO=57;RPL=5;RPP=13.8677;RPPR=126.784;RPR=0;RUN=1;SAF=5;SAP=13.8677;SAR=0;SRF=57;SRP=126.784;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:31:31,0:31:1104:0:0:0,-9.33193,-99.6645 0/1:16:13,3:13:468:3:107:-5.16533,0,-37.6398 0/1:15:13,2:13:452:2:70:-2.13167,0,-36.4967 dDocent_Contig_3566 14 . T C 720.224 . AB=0.196721;ABP=149.211;AC=3;AF=0.5;AN=6;AO=36;CIGAR=1X;DP=183;DPB=183;DPRA=0;EPP=81.1833;EPPR=322.217;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=1462;QR=5849;RO=147;RPL=0;RPP=81.1833;RPPR=322.217;RPR=36;RUN=1;SAF=36;SAP=81.1833;SAR=0;SRF=147;SRP=322.217;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:96:83,13:83:3328:13:527:-18.8782,0,-270.67 0/1:23:18,5:18:691:5:203:-11.7294,0,-55.589 0/1:64:46,18:46:1830:18:732:-46.9377,0,-145.642 dDocent_Contig_3567 9 . G A 4561.17 . AB=0.720379;ABP=92.0201;AC=3;AF=0.5;AN=6;AO=152;CIGAR=1X4M;DP=211;DPB=211;DPRA=0;EPP=333.074;EPPR=113.755;GTI=0;LEN=1;MEANALT=1.66667;MQM=59.9408;MQMR=60;NS=3;NUMALT=2;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=5809;QR=1985;RO=51;RPL=0;RPP=333.074;RPPR=113.755;RPR=152;RUN=1;SAF=152;SAP=333.074;SAR=0;SRF=51;SRP=113.755;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|1:104:31,0,70:31:1211:0,70:0,2681:-210.679,-220.011,-319.563,0,-99.5513,-78.4792 0|1:29:6,0,23:6:229:0,23:0,883:-71.055,-72.8611,-91.6485,0,-19.1692,-12.2455 0|1:78:14,5,59:14:545:5,59:195,2245:-179.906,-168.091,-211.378,0,-28.7613,-27.0298 dDocent_Contig_3568 139 . T A 1195.26 . AB=0.554217;ABP=5.12945;AC=3;AF=0.5;AN=6;AO=46;CIGAR=1X;DP=83;DPB=83;DPRA=0;EPP=102.898;EPPR=83.3548;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=6.93889e-18;PAIRED=0.434783;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=1656;QR=1466;RO=37;RPL=0;RPP=102.898;RPPR=83.3548;RPR=46;RUN=1;SAF=0;SAP=102.898;SAR=46;SRF=0;SRP=83.3548;SRR=37;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:40:11,29:11:438:29:1028:-80.7918,0,-27.7332 0/1:23:9,14:9:361:14:523:-40.4855,0,-25.9293 0/1:20:17,3:17:667:3:105:-3.76918,0,-54.3391 dDocent_Contig_3570 11 . T C 3180.71 . AB=0.381643;ABP=28.1973;AC=3;AF=0.5;AN=6;AO=79;CIGAR=1M1D2M1X12M;DP=207;DPB=196.412;DPRA=0;EPP=174.557;EPPR=85.5263;GTI=0;LEN=1;MEANALT=4.66667;MQM=59.9114;MQMR=60;NS=3;NUMALT=3;ODDS=5.55112e-17;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=2998;QR=1481;RO=38;RPL=0;RPP=174.557;RPPR=85.5263;RPR=79;RUN=1;SAF=79;SAP=174.557;SAR=0;SRF=38;SRP=85.5263;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 1|0:114:26,51,27,7:26:1011:51,27,7:1927,1022,287:-150.775,-0.662756,-68.3921,-74.852,0,-149.806,-134.91,-60.0531,-134.243,-215.886 1|0:24:2,8,11,3:2:75:8,11,3:303,389,120:-49.7373,-25.5063,-29.2423,-18.6792,0,-21.5092,-40.4492,-21.7573,-14.9303,-45.69 1|0:69:10,20,31,4:10:395:20,31,4:768,1166,163:-123.051,-63.0157,-89.5025,-30.5339,0,-53.7088,-112.612,-82.0735,-49.591,-143.915 dDocent_Contig_3573 38 . A G 35.6645 . AB=0.285714;ABP=5.80219;AC=1;AF=0.166667;AN=6;AO=4;CIGAR=1X;DP=54;DPB=54;DPRA=0.921053;EPP=11.6962;EPPR=111.584;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=159;QR=2004;RO=50;RPL=0;RPP=11.6962;RPPR=111.584;RPR=4;RUN=1;SAF=4;SAP=11.6962;SAR=0;SRF=50;SRP=111.584;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:19:19,0:19:757:0:0:0,-5.71957,-68.4487 0/1:7:5,2:5:196:2:79:-5.39003,0,-15.9066 0/0:28:26,2:26:1051:2:80:0,-0.837265,-87.2888 dDocent_Contig_3574 65 . T C 874.165 . AB=0.44;ABP=5.35549;AC=3;AF=0.5;AN=6;AO=33;CIGAR=1X;DP=75;DPB=75;DPRA=0;EPP=74.6689;EPPR=94.2121;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=1272;QR=1620;RO=42;RPL=33;RPP=74.6689;RPPR=94.2121;RPR=0;RUN=1;SAF=33;SAP=74.6689;SAR=0;SRF=42;SRP=94.2121;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:33:21,12:21:805:12:478:-33.4367,0,-62.8239 0/1:21:9,12:9:364:12:462:-35.597,0,-26.8028 0/1:21:12,9:12:451:9:332:-23.9057,0,-34.6124 dDocent_Contig_3575 13 . A T 2314.77 . AB=0.310345;ABP=93.6131;AC=3;AF=0.5;AN=6;AO=90;CIGAR=2X;DP=290;DPB=290;DPRA=0;EPP=198.443;EPPR=417.762;GTI=0;LEN=1;MEANALT=2;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=3573;QR=7652;RO=191;RPL=0;RPP=198.443;RPPR=417.762;RPR=90;RUN=1;SAF=90;SAP=198.443;SAR=0;SRF=191;SRP=417.762;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|1:179:110,62:110:4393:62:2464:-169.739,0,-343.152 0|1:35:27,8:27:1091:8:316:-18.2683,0,-87.9406 0|1:76:54,20:54:2168:20:793:-48.9931,0,-172.611 dDocent_Contig_3576 12 . T C 287.666 . AB=0.0769231;ABP=104.067;AC=3;AF=0.5;AN=6;AO=5;CIGAR=1X4M;DP=65;DPB=65;DPRA=0;EPP=13.8677;EPPR=107.241;GTI=0;LEN=1;MEANALT=1.66667;MQM=60;MQMR=60;NS=3;NUMALT=2;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=202;QR=1916;RO=48;RPL=0;RPP=13.8677;RPPR=107.241;RPR=5;RUN=1;SAF=5;SAP=13.8677;SAR=0;SRF=48;SRP=107.241;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|1:23:20,0,3:20:800:0,3:0,122:-4.4488,-10.4694,-76.3634,0,-66.2993,-65.3962 0|1:20:15,4,1:15:597:4,1:156,39:-8.3076,0,-47.9598,-9.61717,-45.9585,-58.4789 0|1:22:13,8,1:13:519:8,1:310,41:-21.5326,0,-40.3281,-22.0594,-39.3515,-64.5119 dDocent_Contig_3577 59 . C T 32.2743 . AB=0.142857;ABP=26.2761;AC=1;AF=0.166667;AN=6;AO=4;CIGAR=1X;DP=52;DPB=52;DPRA=1.23333;EPP=11.6962;EPPR=107.241;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=162;QR=1881;RO=48;RPL=4;RPP=11.6962;RPPR=107.241;RPR=0;RUN=1;SAF=4;SAP=11.6962;SAR=0;SRF=48;SRP=107.241;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:16:15,1:15:587:1:40:0,-0.820801,-49.165 0/0:15:15,0:15:574:0:0:0,-4.51545,-51.9935 0/1:21:18,3:18:720:3:122:-5.05086,0,-58.805 dDocent_Contig_3578 10 . T G 618.227 . AB=0.148276;ABP=314.624;AC=2;AF=0.333333;AN=6;AO=46;CIGAR=1X;DP=356;DPB=356;DPRA=0;EPP=102.898;EPPR=671.824;GTI=0;LEN=1;MEANALT=1.33333;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=1810;QR=12378;RO=308;RPL=0;RPP=102.898;RPPR=671.824;RPR=46;RUN=1;SAF=46;SAP=102.898;SAR=0;SRF=308;SRP=671.824;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:178:144,32:144:5779:32:1257:-60.0152,0,-466.508 0/0:66:63,3:63:2527:3:123:0,-8.40319,-216.099 0/1:112:101,11:101:4072:11:430:-5.33031,0,-332.73 dDocent_Contig_3579 31 . A T 95.3069 . AB=0.333333;ABP=5.9056;AC=1;AF=0.166667;AN=6;AO=4;CIGAR=1X;DP=55;DPB=55;DPRA=0.55814;EPP=3.0103;EPPR=105.24;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=58.9216;NS=3;NUMALT=1;ODDS=0;PAIRED=0;PAIREDR=0.882353;PAO=0;PQA=0;PQR=0;PRO=0;QA=162;QR=2022;RO=51;RPL=0;RPP=11.6962;RPPR=113.755;RPR=4;RUN=1;SAF=2;SAP=3.0103;SAR=2;SRF=50;SRP=105.24;SRR=1;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:26:26,0:26:1025:0:0:0,-7.82678,-92.5437 0/0:17:17,0:17:676:0:0:0,-5.11751,-58.2722 0/1:12:8,4:8:321:4:162:-11.3546,0,-25.6445 dDocent_Contig_3580 14 . C T 185.119 . AB=0.121212;ABP=126.389;AC=2;AF=0.333333;AN=6;AO=12;CIGAR=3M1X1M;DP=99;DPB=96.6;DPRA=0;EPP=29.068;EPPR=183.243;GTI=0;LEN=1;MEANALT=1.33333;MQM=60;MQMR=60;NS=3;NUMALT=2;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=460;QR=3300;RO=83;RPL=0;RPP=29.068;RPPR=183.243;RPR=12;RUN=1;SAF=12;SAP=29.068;SAR=0;SRF=83;SRP=183.243;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|1:52:46,0,6:46:1828:0,6:0,231:-5.50209,-19.3495,-169.853,0,-150.89,-149.083 0|1:22:17,0,5:17:676:0,5:0,198:-11.5749,-16.6924,-72.3518,0,-56.0553,-54.5501 0|0:25:20,4,1:20:796:4,1:157,31:-6.9577,0,-64.4187,-10.5063,-63.1385,-75.7492 dDocent_Contig_3581 28 . C T 193.083 . AB=0.146154;ABP=144.39;AC=3;AF=0.5;AN=6;AO=19;CIGAR=1X;DP=130;DPB=130;DPRA=0;EPP=44.2683;EPPR=131.362;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=53.7297;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=0.864865;PAO=0;PQA=0;PQR=0;PRO=0;QA=699;QR=4308;RO=111;RPL=0;RPP=44.2683;RPPR=244.044;RPR=19;RUN=1;SAF=19;SAP=44.2683;SAR=0;SRF=96;SRP=131.362;SRR=15;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:45:36,9:36:1414:9:325:-16.0412,0,-109.59 0/1:43:38,5:38:1487:5:190:-4.5192,0,-115.045 0/1:42:37,5:37:1407:5:184:-4.26953,0,-98.7561 dDocent_Contig_3582 8 . T C 263.296 . AB=0.188235;ABP=74.7711;AC=2;AF=0.333333;AN=6;AO=18;CIGAR=1X;DP=110;DPB=110;DPRA=0;EPP=42.0968;EPPR=202.786;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=679;QR=3489;RO=92;RPL=0;RPP=42.0968;RPPR=202.786;RPR=18;RUN=1;SAF=18;SAP=42.0968;SAR=0;SRF=92;SRP=202.786;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:65:56,9:56:2128:9:337:-11.1165,0,-172.188 0/1:20:13,7:13:500:7:271:-18.7357,0,-39.3276 0/0:25:23,2:23:861:2:71:0,-0.784166,-71.065 dDocent_Contig_3583 21 . T A 186.988 . AB=0.16;ABP=78.317;AC=1;AF=0.166667;AN=6;AO=12;CIGAR=1X;DP=214;DPB=214;DPRA=1.07914;EPP=29.068;EPPR=441.648;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=475;QR=8099;RO=202;RPL=0;RPP=29.068;RPPR=441.648;RPR=12;RUN=1;SAF=12;SAP=29.068;SAR=0;SRF=202;SRP=441.648;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:103:103,0:103:4146:0:0:0,-31.0061,-373.096 0/0:36:36,0:36:1437:0:0:0,-10.8371,-129.58 0/1:75:63,12:63:2516:12:475:-20.5227,0,-203.997 dDocent_Contig_3584 16 . A G 432.485 . AB=0.276923;ABP=31.1058;AC=2;AF=0.333333;AN=6;AO=18;CIGAR=1X;DP=87;DPB=87;DPRA=1.47727;EPP=42.0968;EPPR=152.842;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=729;QR=2710;RO=69;RPL=0;RPP=42.0968;RPPR=152.842;RPR=18;RUN=1;SAF=18;SAP=42.0968;SAR=0;SRF=69;SRP=152.842;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:30:21,9:21:821:9:364:-24.0935,0,-65.1728 0/0:22:22,0:22:869:0:0:0,-6.62266,-78.517 0/1:35:26,9:26:1020:9:365:-22.6779,0,-81.547 dDocent_Contig_3586 84 . G C 4469.47 . AB=0.639706;ABP=49.1222;AC=3;AF=0.5;AN=6;AO=174;CIGAR=1X;DP=272;DPB=272;DPRA=0;EPP=380.846;EPPR=215.815;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=5928;QR=3336;RO=98;RPL=174;RPP=380.846;RPPR=215.815;RPR=0;RUN=1;SAF=174;SAP=380.846;SAR=0;SRF=98;SRP=215.815;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:121:41,80:41:1409:80:2721:-208.717,0,-90.6828 0/1:92:35,57:35:1163:57:1937:-146.913,0,-77.2725 0/1:59:22,37:22:764:37:1270:-96.84,0,-51.3206 dDocent_Contig_3587 36 . A C 487.055 . AB=0.151961;ABP=432.281;AC=2;AF=0.333333;AN=6;AO=71;CIGAR=1X;DP=523;DPB=523;DPRA=0;EPP=157.185;EPPR=608.346;GTI=0;LEN=1;MEANALT=1.66667;MQM=45.1268;MQMR=40.5682;NS=3;NUMALT=1;ODDS=0;PAIRED=0;PAIREDR=0.098434;PAO=0;PQA=0;PQR=0;PRO=0;QA=2421;QR=13401;RO=447;RPL=0;RPP=157.185;RPPR=973.658;RPR=71;RUN=1;SAF=0;SAP=157.185;SAR=71;SRF=47;SRP=608.346;SRR=400;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:245:203,40:203:6144:40:1362:-40.5285,0,-401.035 0/0:115:106,9:106:3071:9:321:0,-6.72714,-206.689 0/1:163:138,22:138:4186:22:738:-11.6999,0,-271.151 dDocent_Contig_3589 15 . C A 2083.99 . AB=0.275081;ABP=138.787;AC=3;AF=0.5;AN=6;AO=85;CIGAR=1X;DP=309;DPB=309;DPRA=0;EPP=187.585;EPPR=489.42;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=3401;QR=8974;RO=224;RPL=0;RPP=187.585;RPPR=489.42;RPR=85;RUN=1;SAF=85;SAP=187.585;SAR=0;SRF=224;SRP=489.42;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:203:136,67:136:5463:67:2678:-180.033,0,-430.374 0/1:41:35,6:35:1395:6:243:-9.90595,0,-113.462 0/1:65:53,12:53:2116:12:480:-23.9832,0,-171.048 dDocent_Contig_3590 22 . A G 2101.25 . AB=0.452381;ABP=6.31921;AC=3;AF=0.5;AN=6;AO=76;CIGAR=1X;DP=168;DPB=168;DPRA=0;EPP=168.042;EPPR=202.786;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=0.973684;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=2948;QR=3616;RO=92;RPL=0;RPP=168.042;RPPR=202.786;RPR=76;RUN=1;SAF=76;SAP=168.042;SAR=0;SRF=92;SRP=202.786;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:75:46,29:46:1809:29:1101:-76.7942,0,-140.459 0/1:29:17,12:17:674:12:474:-34.2812,0,-52.262 0/1:64:29,35:29:1133:35:1373:-104.573,0,-82.9976 dDocent_Contig_3592 35 . T C 553.183 . AB=0.12381;ABP=519.283;AC=3;AF=0.5;AN=6;AO=52;CIGAR=2X;DP=420;DPB=420;DPRA=0;EPP=115.927;EPPR=802.112;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=2070;QR=14689;RO=368;RPL=0;RPP=115.927;RPPR=802.112;RPR=52;RUN=1;SAF=52;SAP=115.927;SAR=0;SRF=368;SRP=802.112;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|1:247:221,26:221:8824:26:1019:-17.638,0,-719.306 0|1:78:68,10:68:2704:10:399:-12.7885,0,-220.014 0|1:95:79,16:79:3161:16:652:-30.4147,0,-255.97 dDocent_Contig_3593 18 . T C 15402.2 . AB=0.746528;ABP=155.044;AC=6;AF=1;AN=6;AO=460;CIGAR=1X3M;DP=568;DPB=568.75;DPRA=0;EPP=1001.89;EPPR=85.5263;GTI=0;LEN=1;MEANALT=4.66667;MQM=60;MQMR=60;NS=3;NUMALT=3;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=18294;QR=1438;RO=38;RPL=0;RPP=1001.89;RPPR=85.5263;RPR=460;RUN=1;SAF=460;SAP=1001.89;SAR=0;SRF=38;SRP=85.5263;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 1|1:288:25,28,14,215:25:945:28,14,215:1108,559,8553:-710.381,-626.719,-695.746,-671.87,-658.138,-745.112,-13.7407,0,-45.1536,-26.4712 1|1:117:0,1,7,108:0:0:1,7,108:40,279,4266:-383.515,-380.22,-379.919,-360.54,-357.245,-358.432,-32.5112,-29.2159,-9.53474,0 1|1:163:13,2,11,137:13:493:2,11,137:78,431,5475:-447.847,-445.349,-485.168,-416.321,-450.33,-453.43,-0.825116,-34.8291,-5.79632,0 dDocent_Contig_3594 28 . T C 6606.78 . AB=0.616477;ABP=44.4904;AC=3;AF=0.5;AN=6;AO=217;CIGAR=1X;DP=352;DPB=352;DPRA=0;EPP=474.22;EPPR=296.159;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=8576;QR=5175;RO=135;RPL=0;RPP=474.22;RPPR=296.159;RPR=217;RUN=1;SAF=217;SAP=474.22;SAR=0;SRF=135;SRP=296.159;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:218:82,136:82:3160:136:5372:-417.721,0,-218.874 0/1:56:22,34:22:841:34:1320:-102.194,0,-59.1433 0/1:78:31,47:31:1174:47:1884:-146.285,0,-82.4583 dDocent_Contig_3595 27 . T G 709.488 . AB=0.108108;ABP=52.3673;AC=3;AF=0.5;AN=6;AO=4;CIGAR=1X6M2X1M;DP=62;DPB=62;DPRA=0;EPP=11.6962;EPPR=52.9542;GTI=0;LEN=1;MEANALT=4;MQM=45;MQMR=60;NS=3;NUMALT=4;ODDS=1.38778e-17;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=137;QR=884;RO=23;RPL=0;RPP=11.6962;RPPR=52.9542;RPR=4;RUN=1;SAF=4;SAP=11.6962;SAR=0;SRF=23;SRP=52.9542;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|1:37:11,4,13,4,5:11:416:4,13,4,5:159,507,137,202:-38.3637,-28.6809,-61.5771,0,-21.1057,-30.1878,-30.8658,-51.9692,-23.2916,-63.7582,-25.0171,-46.1238,-17.4413,-48.3062,-57.6131 0|1:10:4,0,6,0,0:4:155:0,6,0,0:0,226,0,0:-17.6907,-18.8948,-31.633,0,-13.121,-11.3148,-18.8948,-31.633,-13.121,-31.633,-18.8948,-31.633,-13.121,-31.633,-31.633 0|1:15:8,0,7,0,0:8:313:0,7,0,0:0,273,0,0:-20.4172,-22.8255,-48.5621,0,-26.1268,-24.0196,-22.8255,-48.5621,-26.1268,-48.5621,-22.8255,-48.5621,-26.1268,-48.5621,-48.5621 dDocent_Contig_3597 36 . G T 4967.05 . AB=0.345763;ABP=63.9661;AC=3;AF=0.5;AN=6;AO=102;CIGAR=5M1X5M;DP=295;DPB=328.545;DPRA=0;EPP=215.9;EPPR=126.784;GTI=0;LEN=1;MEANALT=5;MQM=59.951;MQMR=59.8246;NS=3;NUMALT=3;ODDS=5.55112e-17;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=3864;QR=2102;RO=57;RPL=101;RPP=215.9;RPPR=126.784;RPR=1;RUN=1;SAF=102;SAP=224.5;SAR=0;SRF=57;SRP=126.784;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|1:161:30,79,0,48:30:1114:79,0,48:2990,0,1847:-296.569,-60.4902,-127.867,-305.6,-151.649,-396.761,-153.956,0,-245.117,-230.668 0|1:62:16,17,0,28:16:584:17,0,28:640,0,1035:-84.5709,-36.9431,-79.539,-89.3874,-84.6565,-137.099,-4.73802,0,-52.4505,-44.0217 0|1:72:11,25,5,26:11:404:25,5,26:939,154,982:-121.087,-47.4693,-72.9677,-112.058,-68.1536,-143.574,-43.9158,0,-64.6005,-69.1137 dDocent_Contig_3598 95 . A G 279.617 . AB=0.272727;ABP=27.6861;AC=1;AF=0.166667;AN=6;AO=16;CIGAR=1X;DP=92;DPB=92;DPRA=1.8;EPP=37.7539;EPPR=168.042;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=542;QR=2578;RO=76;RPL=16;RPP=37.7539;RPPR=168.042;RPR=0;RUN=1;SAF=16;SAP=37.7539;SAR=0;SRF=76;SRP=168.042;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:55:40,15:40:1364:15:508:-29.4846,0,-106.501 0/0:17:16,1:16:523:1:34:0,-1.7186,-43.9839 0/0:20:20,0:20:691:0:0:0,-6.0206,-62.5127 dDocent_Contig_3599 136 . A G 1357.97 . AB=0.449612;ABP=5.8551;AC=3;AF=0.5;AN=6;AO=58;CIGAR=1X;DP=129;DPB=129;DPRA=0;EPP=128.956;EPPR=157.185;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=1991;QR=2458;RO=71;RPL=0;RPP=128.956;RPPR=157.185;RPR=58;RUN=1;SAF=0;SAP=128.956;SAR=58;SRF=0;SRP=157.185;SRR=71;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:59:35,24:35:1224:24:830:-57.2564,0,-92.7023 0/1:38:25,13:25:865:13:443:-28.7571,0,-66.7245 0/1:32:11,21:11:369:21:718:-55.3062,0,-23.8971 dDocent_Contig_3600 98 . N A 1102.69 . AB=0;ABP=0;AC=6;AF=1;AN=6;AO=36;CIGAR=1X;DP=36;DPB=36;DPRA=0;EPP=81.1833;EPPR=0;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=0;NS=3;NUMALT=1;ODDS=0;PAIRED=0.805556;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=1209;QR=0;RO=0;RPL=36;RPP=81.1833;RPPR=0;RPR=0;RUN=1;SAF=36;SAP=81.1833;SAR=0;SRF=0;SRP=0;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 1/1:18:0,18:0:0:18:582:-52.687,-5.41854,0 1/1:9:0,9:0:0:9:314:-28.5978,-2.70927,0 1/1:9:0,9:0:0:9:313:-28.5071,-2.70927,0 dDocent_Contig_3601 50 . T C 42.6821 . AB=0.1875;ABP=16.582;AC=1;AF=0.166667;AN=6;AO=3;CIGAR=1X;DP=40;DPB=40;DPRA=1.33333;EPP=9.52472;EPPR=39.6906;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=117;QR=1475;RO=37;RPL=3;RPP=9.52472;RPPR=39.6906;RPR=0;RUN=1;SAF=3;SAP=9.52472;SAR=0;SRF=37;SRP=83.3548;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:12:12,0:12:480:0:0:0,-3.61236,-43.5472 0/0:12:12,0:12:474:0:0:0,-3.61236,-43.0104 0/1:16:13,3:13:521:3:117:-6.0921,0,-42.4175 dDocent_Contig_3602 29 . G A 2158.95 . AB=0.5;ABP=3.0103;AC=3;AF=0.5;AN=6;AO=75;CIGAR=1X;DP=150;DPB=150;DPRA=0;EPP=165.871;EPPR=165.871;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=2952;QR=2906;RO=75;RPL=0;RPP=165.871;RPPR=165.871;RPR=75;RUN=1;SAF=75;SAP=165.871;SAR=0;SRF=75;SRP=165.871;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:94:53,41:53:2055:41:1614:-117.193,0,-156.843 0/1:22:7,15:7:264:15:603:-47.9864,0,-17.492 0/1:34:15,19:15:587:19:735:-56.2394,0,-42.9289 dDocent_Contig_3603 14 . G A 738.073 . AB=0.227848;ABP=104.657;AC=3;AF=0.5;AN=6;AO=36;CIGAR=1M1X1M;DP=158;DPB=159.667;DPRA=0;EPP=81.1833;EPPR=252.73;GTI=0;LEN=1;MEANALT=2;MQM=60;MQMR=60;NS=3;NUMALT=2;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=1379;QR=4506;RO=115;RPL=0;RPP=81.1833;RPPR=252.73;RPR=36;RUN=1;SAF=36;SAP=81.1833;SAR=0;SRF=115;SRP=252.73;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|1:81:60,5,14:60:2330:5,14:193,553:-27.4718,-29.681,-219.62,0,-175.621,-187.257 0|1:19:15,0,4:15:597:0,4:0,160:-9.06423,-13.5797,-62.7362,0,-49.5556,-48.3515 0|1:58:40,0,18:40:1579:0,18:0,666:-42.7942,-54.8354,-184.781,0,-130.323,-124.905 dDocent_Contig_3604 18 . T G 3860.58 . AB=0.77707;ABP=107.697;AC=3;AF=0.5;AN=6;AO=122;CIGAR=1X;DP=157;DPB=157;DPRA=0;EPP=267.93;EPPR=79.0118;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=4861;QR=1402;RO=35;RPL=0;RPP=267.93;RPPR=79.0118;RPR=122;RUN=1;SAF=122;SAP=267.93;SAR=0;SRF=35;SRP=79.0118;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:81:16,65:16:633:65:2595:-209.286,0,-32.9153 0/1:21:2,19:2:81:19:759:-62.3101,0,-1.3641 0/1:55:17,38:17:688:38:1507:-119.317,0,-45.692 dDocent_Contig_3605 13 . G A 59.3337 . AB=0.0988372;ABP=243.438;AC=3;AF=0.5;AN=6;AO=17;CIGAR=1X;DP=172;DPB=172;DPRA=0;EPP=39.9253;EPPR=339.589;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=684;QR=6228;RO=155;RPL=0;RPP=39.9253;RPPR=339.589;RPR=17;RUN=1;SAF=17;SAP=39.9253;SAR=0;SRF=155;SRP=339.589;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:63:57,6:57:2296:6:245:-3.46458,0,-187.825 0/1:45:41,4:41:1653:4:163:-1.51208,0,-135.446 0/1:64:57,7:57:2279:7:276:-5.94251,0,-186 dDocent_Contig_3606 10 . T G 2432.79 . AB=0.518519;ABP=3.49285;AC=3;AF=0.5;AN=6;AO=84;CIGAR=1X;DP=162;DPB=162;DPRA=0;EPP=185.414;EPPR=172.385;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=3297;QR=3131;RO=78;RPL=0;RPP=185.414;RPPR=172.385;RPR=84;RUN=1;SAF=84;SAP=185.414;SAR=0;SRF=78;SRP=172.385;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:99:42,57:42:1671:57:2264:-174.123,0,-120.811 0/1:38:19,19:19:765:19:722:-53.8574,0,-57.7323 0/1:25:17,8:17:695:8:311:-20.8211,0,-55.3514 dDocent_Contig_3607 20 . T G 11729.3 . AB=0.901408;ABP=102.378;AC=5;AF=0.833333;AN=6;AO=346;CIGAR=1X;DP=365;DPB=365;DPRA=0;EPP=754.34;EPPR=44.2683;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=1.38778e-17;PAIRED=0.99711;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=13784;QR=767;RO=19;RPL=0;RPP=754.34;RPPR=44.2683;RPR=346;RUN=1;SAF=346;SAP=754.34;SAR=0;SRF=19;SRP=44.2683;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 1/1:201:7,194:7:283:194:7738:-670.169,-34.664,0 0/1:71:7,64:7:281:64:2532:-206.645,0,-4.28854 1/1:93:5,88:5:203:88:3514:-297.64,-9.34274,0 dDocent_Contig_3608 9 . T A 224.25 . AB=0.206349;ABP=50.1967;AC=2;AF=0.333333;AN=6;AO=14;CIGAR=1X;DP=148;DPB=148;DPRA=0;EPP=25.3454;EPPR=293.988;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=0.857143;PAIREDR=0.910448;PAO=0;PQA=0;PQR=0;PRO=0;QA=518;QR=5145;RO=134;RPL=0;RPP=33.4109;RPPR=293.988;RPR=14;RUN=1;SAF=13;SAP=25.3454;SAR=1;SRF=134;SRP=293.988;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:85:84,1:84:3219:1:27:0,-22.8878,-287.158 0/1:24:16,8:16:614:8:303:-20.4041,0,-48.3749 0/1:39:34,5:34:1312:5:188:-5.54374,0,-106.628 dDocent_Contig_3609 57 . C A 157.468 . AB=0.144444;ABP=101.836;AC=2;AF=0.333333;AN=6;AO=17;CIGAR=1X;DP=142;DPB=142;DPRA=0;EPP=39.9253;EPPR=274.444;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=6.93889e-18;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=635;QR=4936;RO=125;RPL=17;RPP=39.9253;RPPR=274.444;RPR=0;RUN=1;SAF=17;SAP=39.9253;SAR=0;SRF=125;SRP=274.444;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:52:48,4:48:1933:4:128:0,-3.82658,-162.342 0/1:26:22,4:22:826:4:155:-6.49669,0,-66.8165 0/1:64:55,9:55:2177:9:352:-12.7729,0,-176.845 dDocent_Contig_3610 19 . T C 4606.97 . AB=0.451429;ABP=10.1824;AC=3;AF=0.5;AN=6;AO=158;CIGAR=1X;DP=350;DPB=350;DPRA=0;EPP=346.103;EPPR=419.933;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=6345;QR=7595;RO=192;RPL=0;RPP=346.103;RPPR=419.933;RPR=158;RUN=1;SAF=158;SAP=346.103;SAR=0;SRF=192;SRP=419.933;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:154:81,73:81:3194:73:2918:-216.351,0,-241.163 0/1:76:45,31:45:1772:31:1248:-89.7131,0,-136.819 0/1:120:66,54:66:2629:54:2179:-160.156,0,-200.614 dDocent_Contig_3611 98 . N A 1051.22 . AB=0;ABP=0;AC=6;AF=1;AN=6;AO=38;CIGAR=1X;DP=38;DPB=38;DPRA=0;EPP=85.5263;EPPR=0;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=0;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=1153;QR=0;RO=0;RPL=38;RPP=85.5263;RPPR=0;RPR=0;RUN=1;SAF=38;SAP=85.5263;SAR=0;SRF=0;SRP=0;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 1/1:16:0,16:0:0:16:525:-47.5644,-4.81648,0 1/1:11:0,11:0:0:11:289:-26.2688,-3.31133,0 1/1:11:0,11:0:0:11:339:-30.812,-3.31133,0 dDocent_Contig_3612 98 . N T 56.0492 . AB=0;ABP=0;AC=2;AF=1;AN=2;AO=2;CIGAR=1X;DP=2;DPB=2;DPRA=0;EPP=7.35324;EPPR=0;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=0;NS=1;NUMALT=1;ODDS=5.99146;PAIRED=1;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=59;QR=0;RO=0;RPL=2;RPP=7.35324;RPPR=0;RPR=0;RUN=1;SAF=2;SAP=7.35324;SAR=0;SRF=0;SRP=0;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 1/1:2:0,2:0:0:2:59:-5.60384,-0.60206,0 ./.:.:.:.:.:.:.:. ./.:.:.:.:.:.:.:. dDocent_Contig_3613 15 . A G 463.17 . AB=0.423077;ABP=7.01917;AC=3;AF=0.5;AN=6;AO=33;CIGAR=4X;DP=78;DPB=78;DPRA=0;EPP=74.6689;EPPR=100.727;GTI=0;LEN=1;MEANALT=1;MQM=25.303;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=1301;QR=1763;RO=45;RPL=0;RPP=74.6689;RPPR=100.727;RPR=33;RUN=1;SAF=33;SAP=74.6689;SAR=0;SRF=45;SRP=100.727;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|1:33:24,9:24:933:9:354:-10.4183,0,-74.3426 0|1:19:10,9:10:392:9:357:-14.8306,0,-29.9178 0|1:26:11,15:11:438:15:590:-26.591,0,-31.9492 dDocent_Contig_3614 37 . A C 30.8404 . AB=0.105263;ABP=80.1547;AC=1;AF=0.166667;AN=6;AO=12;CIGAR=1X;DP=238;DPB=238;DPRA=0;EPP=29.068;EPPR=493.763;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=484;QR=8794;RO=226;RPL=0;RPP=29.068;RPPR=493.763;RPR=12;RUN=1;SAF=12;SAP=29.068;SAR=0;SRF=226;SRP=493.763;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:95:90,5:90:3486:5:202:0,-10.036,-295.247 0/1:57:51,6:51:1997:6:241:-4.90759,0,-162.775 0/0:86:85,1:85:3311:1:41:0,-21.794,-293.972 dDocent_Contig_3615 14 . C T 188 . AB=0.08;ABP=79.6198;AC=1;AF=0.166667;AN=6;AO=4;CIGAR=1X1M1X;DP=100;DPB=100;DPRA=2.08333;EPP=11.6962;EPPR=185.414;GTI=0;LEN=1;MEANALT=2;MQM=60;MQMR=60;NS=3;NUMALT=2;ODDS=0;PAIRED=0;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=160;QR=3344;RO=84;RPL=0;RPP=11.6962;RPPR=185.414;RPR=4;RUN=1;SAF=4;SAP=11.6962;SAR=0;SRF=84;SRP=185.414;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|1:50:42,4,4:42:1679:4,4:160,156:-0.541823,0,-137.101,-0.367192,-125.483,-137.459 0|0:26:18,0,8:18:720:0,8:0,312:-20.6167,-26.0353,-85.3517,0,-59.7091,-57.3009 0|0:24:24,0,0:24:945:0,0:0,0:0,-7.22472,-85.3476,-7.22472,-85.3476,-85.3476 dDocent_Contig_3617 24 . T C 5947.01 . AB=0.356436;ABP=111.498;AC=3;AF=0.5;AN=6;AO=216;CIGAR=1X;DP=606;DPB=606;DPRA=0;EPP=472.048;EPPR=847.713;GTI=0;LEN=1;MEANALT=1.33333;MQM=60;MQMR=59.946;NS=3;NUMALT=1;ODDS=2.77556e-17;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=8694;QR=15594;RO=389;RPL=0;RPP=472.048;RPPR=847.713;RPR=216;RUN=1;SAF=216;SAP=472.048;SAR=0;SRF=389;SRP=847.713;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:360:235,125:235:9480:125:5039:-344.995,0,-744.129 0/1:57:41,16:41:1651:16:653:-41.9437,0,-131.656 0/1:189:113,75:113:4463:75:3002:-213.285,0,-344.616 dDocent_Contig_3619 50 . G C 936.433 . AB=0.484848;ABP=3.1419;AC=2;AF=0.333333;AN=6;AO=33;CIGAR=1X;DP=84;DPB=84;DPRA=0;EPP=74.6689;EPPR=113.755;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=0.969697;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=1334;QR=1992;RO=51;RPL=33;RPP=74.6689;RPPR=113.755;RPR=0;RUN=1;SAF=33;SAP=74.6689;SAR=0;SRF=51;SRP=113.755;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:48:19,29:19:772:29:1173:-91.3969,0,-55.3499 0/0:18:17,1:17:674:1:41:0,-1.32397,-56.8979 0/1:18:15,3:15:546:3:120:-5.76915,0,-44.0344 dDocent_Contig_3621 119 . C A 767.676 . AB=0.534483;ABP=3.60933;AC=3;AF=0.5;AN=6;AO=31;CIGAR=1X;DP=58;DPB=58;DPRA=0;EPP=70.3259;EPPR=61.6401;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=1097;QR=925;RO=27;RPL=0;RPP=70.3259;RPPR=61.6401;RPR=31;RUN=1;SAF=0;SAP=70.3259;SAR=31;SRF=0;SRP=61.6401;SRR=27;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:26:7,19:7:245:19:672:-52.9809,0,-14.5644 0/1:8:2,6:2:69:6:213:-17.1082,0,-4.14442 0/1:24:18,6:18:611:6:212:-12.2004,0,-48.0861 dDocent_Contig_3622 10 . T A 11238.1 . AB=0.67603;ABP=146.734;AC=3;AF=0.5;AN=6;AO=361;CIGAR=1X4M;DP=534;DPB=534;DPRA=0;EPP=786.912;EPPR=354.789;GTI=0;LEN=1;MEANALT=2.66667;MQM=59.8338;MQMR=60;NS=3;NUMALT=2;ODDS=0;PAIRED=0.747922;PAIREDR=0.993827;PAO=0;PQA=0;PQR=0;PRO=0;QA=14315;QR=6318;RO=162;RPL=0;RPP=786.912;RPPR=354.789;RPR=361;RUN=1;SAF=361;SAP=786.912;SAR=0;SRF=162;SRP=354.789;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|1:355:98,3,253:98:3826:3,253:118,10026:-795.409,-815.204,-1128.8,0,-304.793,-238.339 0|1:59:22,3,34:22:849:3,34:115,1346:-104.163,-101.348,-170.158,0,-60.2814,-59.4849 0|1:120:42,3,74:42:1643:3,74:105,2943:-229.758,-233.863,-368.041,0,-126.639,-112.9 dDocent_Contig_3624 39 . T C 554.963 . AB=0.47619;ABP=3.21711;AC=3;AF=0.5;AN=6;AO=20;CIGAR=1X;DP=42;DPB=42;DPRA=0;EPP=46.4397;EPPR=50.7827;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=806;QR=895;RO=22;RPL=0;RPP=46.4397;RPPR=50.7827;RPR=20;RUN=1;SAF=20;SAP=46.4397;SAR=0;SRF=22;SRP=50.7827;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:23:9,14:9:365:14:562:-43.9969,0,-26.2908 0/1:8:6,2:6:243:2:80:-5.18355,0,-19.8394 0/1:11:7,4:7:287:4:164:-11.8386,0,-22.8939 dDocent_Contig_3625 9 . T A 5081.91 . AB=0.273684;ABP=172.065;AC=3;AF=0.5;AN=6;AO=104;CIGAR=1X2M1X3M1X3M1X1M1X;DP=380;DPB=380;DPRA=0;EPP=228.843;EPPR=39.9253;GTI=0;LEN=1;MEANALT=9.33333;MQM=60;MQMR=60;NS=3;NUMALT=7;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=3969;QR=656;RO=17;RPL=0;RPP=228.843;RPPR=39.9253;RPR=104;RUN=1;SAF=104;SAP=228.843;SAR=0;SRF=17;SRP=39.9253;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 1|0:182:8,1,51,38,1,14,37,29:8:307:1,51,38,1,14,37,29:40,1951,1425,36,554,1432,1130:-250.114,-249.227,-274.124,-92.4266,-114.329,-102.272,-137.26,-159.163,-2.36442,-151.019,-249.585,-271.488,-114.687,-159.521,-274.482,-206.927,-228.83,-72.0293,-116.863,-229.188,-227.911,-134.898,-156.801,0,-44.8348,-157.159,-114.501,-148.958,-159.654,-181.557,-24.7563,-69.5908,-181.915,-139.257,-67.2277,-176.123 1|0:100:2,7,26,18,3,6,16,19:2:76:7,26,18,3,6,16,19:250,983,678,106,236,627,748:-135.272,-115.496,-119.622,-55.2978,-41.153,-53.704,-80.3178,-66.1727,-5.97509,-81.1322,-127.243,-113.097,-52.8996,-77.9195,-132.573,-116.461,-102.315,-42.1169,-67.137,-114.062,-120.888,-84.3123,-70.1669,-9.96819,-34.9884,-81.9139,-71.1313,-85.7288,-74.3444,-60.1991,0,-25.0204,-71.946,-61.1633,-29.0141,-74.8579 1|0:98:7,1,27,22,10,4,18,6:7:273:1,27,22,10,4,18,6:38,1035,829,388,157,689,242:-128.327,-127.317,-149.458,-45.4873,-64.8123,-59.8009,-62.5039,-81.8286,0,-78.3224,-98.554,-117.879,-36.0489,-53.0655,-117.985,-117.522,-136.847,-55.0166,-72.0331,-108.083,-138.759,-73.9002,-93.225,-11.3954,-28.4123,-64.4617,-83.4294,-90.923,-110.484,-129.809,-47.9787,-64.9953,-101.046,-120.014,-76.3917,-131.119 dDocent_Contig_3630 98 . N A 340.259 . AB=0;ABP=0;AC=6;AF=1;AN=6;AO=12;CIGAR=2X;DP=12;DPB=98;DPRA=0;EPP=29.068;EPPR=0;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=0;NS=3;NUMALT=1;ODDS=0;PAIRED=0.916667;PAIREDR=0;PAO=172;PQA=5819;PQR=0;PRO=0;QA=373;QR=0;RO=0;RPL=12;RPP=29.068;RPPR=0;RPR=0;RUN=1;SAF=12;SAP=29.068;SAR=0;SRF=0;SRP=0;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 1|1:7:0,7:0:0:7:234:-21.0533,-2.10721,0 1|1:3:0,3:0:0:3:92:-8.26998,-0.90309,0 1|1:2:0,2:0:0:2:47:-4.2249,-0.60206,0 dDocent_Contig_3631 23 . T C 2511.96 . AB=0.329897;ABP=76.1464;AC=3;AF=0.5;AN=6;AO=96;CIGAR=1X;DP=291;DPB=291;DPRA=0;EPP=211.472;EPPR=426.447;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=0.989744;PAO=0;PQA=0;PQR=0;PRO=0;QA=3817;QR=7767;RO=195;RPL=0;RPP=211.472;RPPR=426.447;RPR=96;RUN=1;SAF=96;SAP=211.472;SAR=0;SRF=195;SRP=426.447;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:141:88,53:88:3518:53:2092:-146.007,0,-274.204 0/1:22:14,8:14:560:8:326:-23.0872,0,-44.1191 0/1:128:93,35:93:3689:35:1399:-87.6243,0,-293.478 dDocent_Contig_3632 9 . T C 5432.94 . AB=0.615132;ABP=38.011;AC=3;AF=0.5;AN=6;AO=187;CIGAR=1X;DP=304;DPB=304;DPRA=0;EPP=409.076;EPPR=150.021;GTI=0;LEN=1;MEANALT=1;MQM=54.6524;MQMR=55.5556;NS=3;NUMALT=1;ODDS=0;PAIRED=0.481283;PAIREDR=0.871795;PAO=0;PQA=0;PQR=0;PRO=0;QA=7210;QR=4393;RO=117;RPL=0;RPP=409.076;RPPR=257.073;RPR=187;RUN=1;SAF=187;SAP=409.076;SAR=0;SRF=103;SRP=150.021;SRR=14;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:137:61,76:61:2318:76:2927:-219.036,0,-166.317 0/1:59:23,36:23:854:36:1385:-105.904,0,-52.7544 0/1:108:33,75:33:1221:75:2898:-223.877,0,-68.7991 dDocent_Contig_3633 13 . G A 804.755 . AB=0.333333;ABP=26.1727;AC=2;AF=0.333333;AN=6;AO=32;CIGAR=1X;DP=109;DPB=109;DPRA=3.69231;EPP=72.4974;EPPR=170.214;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=6.93889e-18;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=1247;QR=3075;RO=77;RPL=0;RPP=72.4974;RPPR=170.214;RPR=32;RUN=1;SAF=32;SAP=72.4974;SAR=0;SRF=77;SRP=170.214;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:67:43,24:43:1714:24:922:-63.1088,0,-134.305 0/0:13:13,0:13:523:0:0:0,-3.91339,-47.4171 0/1:29:21,8:21:838:8:325:-20.8896,0,-67.0016 dDocent_Contig_3634 138 . C A 538.601 . AB=0.265957;ABP=47.7334;AC=3;AF=0.5;AN=6;AO=25;CIGAR=1X;DP=94;DPB=94;DPRA=0;EPP=57.2971;EPPR=152.842;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=955;QR=2618;RO=69;RPL=0;RPP=57.2971;RPPR=152.842;RPR=25;RUN=1;SAF=0;SAP=57.2971;SAR=25;SRF=0;SRP=152.842;SRR=69;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:50:32,18:32:1237:18:689:-47.2909,0,-96.572 0/1:20:18,2:18:673:2:78:-1.38287,0,-54.8769 0/1:24:19,5:19:708:5:188:-10.0585,0,-56.82 dDocent_Contig_3635 43 . T C 9113.51 . AB=0.887719;ABP=375.14;AC=4;AF=0.666667;AN=6;AO=288;CIGAR=1X;DP=320;DPB=320;DPRA=0;EPP=628.394;EPPR=72.4974;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=11116;QR=1116;RO=32;RPL=0;RPP=628.394;RPPR=72.4974;RPR=288;RUN=1;SAF=288;SAP=628.394;SAR=0;SRF=32;SRP=72.4974;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:167:18,149:18:656:149:5781:-469.912,0,-9.08726 1/1:35:0,35:0:0:35:1337:-120.615,-10.5361,0 0/1:118:14,104:14:460:104:3998:-324.347,0,-6.18169 dDocent_Contig_3637 25 . C T 644.895 . AB=0.0576923;ABP=91.3725;AC=0;AF=0;AN=6;AO=3;CIGAR=1X3M1X;DP=144;DPB=144;DPRA=0;EPP=9.52472;EPPR=235.358;GTI=0;LEN=1;MEANALT=2;MQM=60;MQMR=60;NS=3;NUMALT=3;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=119;QR=4190;RO=107;RPL=0;RPP=9.52472;RPPR=235.358;RPR=3;RUN=1;SAF=3;SAP=9.52472;SAR=0;SRF=107;SRP=235.358;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|0:52:42,3,7,0:42:1658:3,7,0:119,265,0:-9.06598,-11.9082,-147.441,0,-126.624,-134.313,-21.7092,-148.344,-136.42,-158.14 0|0:52:37,0,15,0:37:1440:0,15,0:0,578,0:-36.6975,-47.8356,-166.177,0,-118.728,-114.212,-47.8356,-166.177,-118.728,-166.177 0|0:40:28,0,10,2:28:1092:0,10,2:0,397,80:-24.249,-32.6778,-122.428,0,-89.7459,-86.7356,-26.0871,-115.837,-83.1551,-115.235 dDocent_Contig_3639 21 . A C 12073.1 . AB=0;ABP=0;AC=6;AF=1;AN=6;AO=408;CIGAR=1X;DP=437;DPB=437;DPRA=0;EPP=888.971;EPPR=52.9542;GTI=0;LEN=1;MEANALT=1.66667;MQM=50.4118;MQMR=59.3043;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=16165;QR=932;RO=23;RPL=0;RPP=888.971;RPPR=52.9542;RPR=408;RUN=1;SAF=408;SAP=888.971;SAR=0;SRF=23;SRP=52.9542;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 1/1:208:7,197:7:284:197:7820:-592.515,-35.7834,0 1/1:100:8,90:8:320:90:3573:-262.67,-0.537244,0 1/1:129:8,121:8:328:121:4772:-351.648,-8.9474,0 dDocent_Contig_3640 13 . G T 846.681 . AB=0.266667;ABP=66.8516;AC=3;AF=0.5;AN=6;AO=36;CIGAR=1X;DP=135;DPB=135;DPRA=0;EPP=81.1833;EPPR=217.986;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=6.93889e-18;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=1442;QR=3896;RO=99;RPL=0;RPP=81.1833;RPPR=217.986;RPR=36;RUN=1;SAF=36;SAP=81.1833;SAR=0;SRF=99;SRP=217.986;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:74:56,18:56:2223:18:717:-42.5778,0,-177.962 0/1:19:16,3:16:614:3:121:-5.56042,0,-49.8653 0/1:42:27,15:27:1059:15:604:-42.0527,0,-82.9532 dDocent_Contig_3641 167 . G A 171.704 . AB=0.258065;ABP=18.771;AC=2;AF=0.333333;AN=6;AO=8;CIGAR=1X;DP=45;DPB=45;DPRA=1.10714;EPP=20.3821;EPPR=83.3548;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=318;QR=1458;RO=37;RPL=8;RPP=20.3821;RPPR=83.3548;RPR=0;RUN=1;SAF=0;SAP=20.3821;SAR=8;SRF=0;SRP=83.3548;SRR=37;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:14:14,0:14:546:0:0:0,-4.21442,-49.4744 0/1:21:14,7:14:551:7:277:-18.9771,0,-43.6066 0/1:10:9,1:9:361:1:41:-1.08427,0,-29.8418 dDocent_Contig_3643 9 . C T 2392.15 . AB=0.2;ABP=131.996;AC=4;AF=0.666667;AN=6;AO=33;CIGAR=1X2M;DP=165;DPB=165;DPRA=0;EPP=74.6689;EPPR=115.927;GTI=0;LEN=1;MEANALT=2;MQM=60;MQMR=60;NS=3;NUMALT=2;ODDS=0;PAIRED=0.272727;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=1255;QR=2032;RO=52;RPL=0;RPP=74.6689;RPPR=115.927;RPR=33;RUN=1;SAF=33;SAP=74.6689;SAR=0;SRF=52;SRP=115.927;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|1:115:35,60,20:35:1364:60,20:2338,761:-181.626,0,-94.0472,-129.748,-49.6957,-235.831 1|1:18:3,11,4:3:118:11,4:435,156:-38.0138,-3.11354,-9.5103,-26.0949,0,-34.597 0|1:32:14,9,9:14:550:9,9:356,338:-25.0943,0,-42.539,-1.63119,-17.5676,-44.1581 dDocent_Contig_3645 16 . G A 2354.32 . AB=0.248157;ABP=227.227;AC=3;AF=0.5;AN=6;AO=101;CIGAR=1X;DP=407;DPB=407;DPRA=0;EPP=222.329;EPPR=667.481;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=4030;QR=12237;RO=306;RPL=0;RPP=222.329;RPPR=667.481;RPR=101;RUN=1;SAF=101;SAP=222.329;SAR=0;SRF=306;SRP=667.481;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:225:178,47:178:7120:47:1867:-100.503,0,-572.706 0/1:55:37,18:37:1459:18:731:-49.558,0,-115.01 0/1:127:91,36:91:3658:36:1432:-90.8938,0,-290.996 dDocent_Contig_3646 30 . T C 275.635 . AB=0.333333;ABP=10.9724;AC=1;AF=0.166667;AN=6;AO=11;CIGAR=1X;DP=66;DPB=66;DPRA=2;EPP=26.8965;EPPR=122.441;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=433;QR=2171;RO=55;RPL=0;RPP=26.8965;RPPR=122.441;RPR=11;RUN=1;SAF=11;SAP=26.8965;SAR=0;SRF=55;SRP=122.441;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:27:27,0:27:1083:0:0:0,-8.12781,-97.7557 0/0:6:6,0:6:220:0:0:0,-1.80618,-20.1452 0/1:33:22,11:22:868:11:433:-29.3874,0,-68.4967 dDocent_Contig_3647 8 . T A 226.142 . AB=0.19697;ABP=55.6521;AC=2;AF=0.333333;AN=6;AO=14;CIGAR=1X;DP=100;DPB=100;DPRA=0;EPP=33.4109;EPPR=189.757;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=542;QR=3329;RO=86;RPL=0;RPP=33.4109;RPPR=189.757;RPR=14;RUN=1;SAF=14;SAP=33.4109;SAR=0;SRF=86;SRP=189.757;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:44:36,8:36:1395:8:310:-15.0183,0,-112.585 0/1:22:17,5:17:655:5:193:-11.1188,0,-52.664 0/0:34:33,1:33:1279:1:39:0,-6.33846,-111.503 dDocent_Contig_3648 60 . G A 178.34 . AB=0.106618;ABP=368.616;AC=1;AF=0.166667;AN=6;AO=54;CIGAR=1X;DP=855;DPB=855;DPRA=0;EPP=120.27;EPPR=1740.19;GTI=0;LEN=1;MEANALT=1.33333;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=0.944444;PAIREDR=0.945;PAO=0;PQA=0;PQR=0;PRO=0;QA=2129;QR=31416;RO=800;RPL=54;RPP=120.27;RPPR=1740.19;RPR=0;RUN=1;SAF=54;SAP=120.27;SAR=0;SRF=800;SRP=1740.19;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:371:354,17:354:13994:17:690:0,-49.2531,-1196.03 0/0:212:203,8:203:7852:8:314:0,-35.2556,-677.723 0/1:272:243,29:243:9570:29:1125:-19.6579,0,-778.86 dDocent_Contig_3649 16 . T C 138.751 . AB=0.205882;ABP=28.557;AC=1;AF=0.166667;AN=6;AO=15;CIGAR=1X;DP=240;DPB=240;DPRA=0;EPP=35.5824;EPPR=491.592;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=6.93889e-18;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=611;QR=8945;RO=225;RPL=0;RPP=35.5824;RPPR=491.592;RPR=15;RUN=1;SAF=15;SAP=35.5824;SAR=0;SRF=225;SRP=491.592;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:147:140,7:140:5604:7:287:0,-18.0462,-477.955 0/1:34:27,7:27:1079:7:284:-15.699,0,-87.1628 0/0:59:58,1:58:2262:1:40:0,-13.7651,-199.746 dDocent_Contig_3650 14 . A G 4140.23 . AB=0.844037;ABP=115.07;AC=4;AF=0.666667;AN=6;AO=131;CIGAR=1X;DP=151;DPB=151;DPRA=0;EPP=287.473;EPPR=44.2683;GTI=0;LEN=1;MEANALT=1.33333;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=5124;QR=755;RO=19;RPL=0;RPP=287.473;RPPR=44.2683;RPR=131;RUN=1;SAF=131;SAP=287.473;SAR=0;SRF=19;SRP=44.2683;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:80:10,69:10:390:69:2716:-220.376,0,-11.2594 0/1:29:6,23:6:243:23:898:-72.3971,0,-13.5183 1/1:42:3,39:3:122:39:1510:-124.773,-1.27077,0 dDocent_Contig_3651 91 . C G 30.6308 . AB=0.1875;ABP=16.582;AC=1;AF=0.166667;AN=6;AO=3;CIGAR=1X;DP=89;DPB=89;DPRA=0.438356;EPP=9.52472;EPPR=187.585;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=104;QR=2939;RO=85;RPL=3;RPP=9.52472;RPPR=187.585;RPR=0;RUN=1;SAF=3;SAP=9.52472;SAR=0;SRF=85;SRP=187.585;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:44:43,0:43:1518:0:0:0,-12.9443,-136.838 0/0:29:29,0:29:970:0:0:0,-8.72987,-87.6005 0/1:16:13,3:13:451:3:104:-4.88661,0,-36.1036 dDocent_Contig_3653 34 . A G 396.168 . AB=0.288136;ABP=26.0132;AC=3;AF=0.5;AN=6;AO=17;CIGAR=1X;DP=59;DPB=59;DPRA=0;EPP=39.9253;EPPR=94.2121;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=0.823529;PAIREDR=0.952381;PAO=0;PQA=0;PQR=0;PRO=0;QA=685;QR=1669;RO=42;RPL=0;RPP=39.9253;RPPR=94.2121;RPR=17;RUN=1;SAF=17;SAP=39.9253;SAR=0;SRF=42;SRP=94.2121;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:22:14,8:14:560:8:317:-22.2726,0,-44.1189 0/1:19:17,2:17:674:2:82:-2.06011,0,-55.2728 0/1:18:11,7:11:435:7:286:-20.6963,0,-34.0845 dDocent_Contig_3654 50 . T C 2517.32 . AB=0.494186;ABP=3.0608;AC=3;AF=0.5;AN=6;AO=85;CIGAR=5M1X5M;DP=172;DPB=174.364;DPRA=0;EPP=187.585;EPPR=165.871;GTI=0;LEN=1;MEANALT=3.66667;MQM=60;MQMR=60;NS=3;NUMALT=3;ODDS=0;PAIRED=0.6;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=3396;QR=2925;RO=75;RPL=85;RPP=187.585;RPPR=165.871;RPR=0;RUN=1;SAF=85;SAP=187.585;SAR=0;SRF=75;SRP=165.871;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|1:100:43,2,0,53:43:1676:2,0,53:76,0,2141:-163.621,-170.333,-307.477,-176.565,-308.079,-314.312,0,-131.566,-137.799,-121.844 0|1:19:8,2,0,9:8:316:2,0,9:63,0,353:-26.6797,-24.0352,-49.4375,-29.088,-50.0395,-55.0981,0,-21.0159,-26.0667,-23.3575 0|1:53:24,0,3,23:24:933:0,3,23:0,118,902:-66.9543,-74.179,-150.839,-64.4725,-141.133,-140.23,0,-76.6662,-66.9594,-69.7425 dDocent_Contig_3656 26 . T C 76.777 . AB=0.123077;ABP=83.2212;AC=2;AF=0.333333;AN=6;AO=8;CIGAR=1X;DP=144;DPB=144;DPRA=0.411392;EPP=20.3821;EPPR=296.159;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=326;QR=5377;RO=135;RPL=0;RPP=20.3821;RPPR=296.159;RPR=8;RUN=1;SAF=8;SAP=20.3821;SAR=0;SRF=135;SRP=296.159;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:79:78,0:78:3141:0:0:0,-23.4803,-282.397 0/1:22:20,2:20:804:2:81:-1.06307,0,-66.0561 0/1:43:37,6:37:1432:6:245:-9.48518,0,-116.183 dDocent_Contig_3659 139 . C A 179.518 . AB=0.235294;ABP=23.7032;AC=1;AF=0.166667;AN=6;AO=8;CIGAR=1X;DP=72;DPB=72;DPRA=1.78947;EPP=20.3821;EPPR=141.985;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=326;QR=2531;RO=64;RPL=0;RPP=20.3821;RPPR=141.985;RPR=8;RUN=1;SAF=0;SAP=20.3821;SAR=8;SRF=0;SRP=141.985;SRR=64;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:34:26,8:26:1040:8:326:-19.4746,0,-83.6593 0/0:22:22,0:22:863:0:0:0,-6.62266,-77.9791 0/0:16:16,0:16:628:0:0:0,-4.81648,-56.8544 dDocent_Contig_3660 11 . G C 13992 . AB=0.8875;ABP=211.689;AC=5;AF=0.833333;AN=6;AO=414;CIGAR=1X;DP=442;DPB=442;DPRA=0;EPP=902;EPPR=63.8115;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=0.997585;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=16515;QR=1126;RO=28;RPL=0;RPP=902;RPPR=63.8115;RPR=414;RUN=1;SAF=414;SAP=902;SAR=0;SRF=28;SRP=63.8115;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:160:18,142:18:724:142:5638:-459.071,0,-17.3196 1/1:150:8,142:8:321:142:5662:-480.138,-15.8966,0 1/1:132:2,130:2:81:130:5215:-461.513,-32.0502,0 dDocent_Contig_3661 12 . T C 35135.3 . AB=0.876649;ABP=1591.34;AC=3;AF=0.5;AN=6;AO=1130;CIGAR=1X;DP=1289;DPB=1289;DPRA=0;EPP=2396.35;EPPR=339.589;GTI=0;LEN=1;MEANALT=1.66667;MQM=55.1823;MQMR=53.6645;NS=3;NUMALT=1;ODDS=0;PAIRED=0.549558;PAIREDR=0.380645;PAO=0;PQA=0;PQR=0;PRO=0;QA=45024;QR=6216;RO=155;RPL=0;RPP=2456.77;RPPR=339.589;RPR=1130;RUN=1;SAF=1123;SAP=2396.35;SAR=7;SRF=155;SRP=339.589;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:514:69,443:69:2790:443:17669:-1389.36,0,-80.3881 0/1:378:37,341:37:1484:341:13559:-1059.86,0,-17.1828 0/1:397:49,346:49:1942:346:13796:-1069.83,0,-49.4461 dDocent_Contig_3662 63 . T A 4582.8 . AB=0.665179;ABP=56.095;AC=3;AF=0.5;AN=6;AO=149;CIGAR=1X;DP=224;DPB=224;DPRA=0;EPP=326.56;EPPR=165.871;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=1.38778e-17;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=5896;QR=2971;RO=75;RPL=149;RPP=326.56;RPPR=165.871;RPR=0;RUN=1;SAF=149;SAP=326.56;SAR=0;SRF=75;SRP=165.871;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:105:33,72:33:1325:72:2869:-226.711,0,-87.9022 0/1:54:13,41:13:519:41:1637:-131.301,0,-30.8021 0/1:65:29,36:29:1127:36:1390:-105.791,0,-82.1483 dDocent_Contig_3663 22 . C A 1970.1 . AB=0.196262;ABP=345.981;AC=2;AF=0.333333;AN=6;AO=84;CIGAR=3M1X5M;DP=428;DPB=430.778;DPRA=0;EPP=185.414;EPPR=563.25;GTI=0;LEN=1;MEANALT=5;MQM=60;MQMR=60;NS=3;NUMALT=5;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=3314;QR=10103;RO=258;RPL=0;RPP=185.414;RPPR=563.25;RPR=84;RUN=1;SAF=84;SAP=185.414;SAR=0;SRF=258;SRP=563.25;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|1:250:148,0,7,26,59,9:148:5809:0,7,26,59,9:0,278,1019,2328,349:-146.977,-191.529,-669.264,-168.643,-646.378,-644.271,-107.748,-585.482,-562.596,-577.655,0,-477.736,-454.849,-393.954,-459.975,-162.864,-640.598,-617.712,-556.816,-449.07,-637.889 0|0:79:33,5,6,16,13,5:33:1282:5,6,16,13,5:200,237,604,510,196:-39.5559,-33.0135,-136.847,-29.9862,-118.849,-133.519,0,-88.8594,-85.832,-100.519,-7.55037,-96.4133,-93.3858,-63.3968,-108.976,-33.3723,-122.235,-119.207,-89.2179,-96.7717,-137.205 0|1:99:77,0,2,7,12,1:77:3012:0,2,7,12,1:0,78,281,476,41:-16.0003,-39.1797,-286.814,-32.7689,-280.402,-279.8,-16.024,-263.659,-257.247,-261.552,0,-247.632,-241.22,-224.477,-244.019,-35.795,-283.429,-277.018,-260.274,-244.247,-283.128 dDocent_Contig_3664 36 . C T 127.189 . AB=0.190476;ABP=37.9607;AC=1;AF=0.166667;AN=6;AO=8;CIGAR=1X;DP=61;DPB=61;DPRA=4.42105;EPP=20.3821;EPPR=118.098;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=295;QR=2124;RO=53;RPL=0;RPP=20.3821;RPPR=118.098;RPR=8;RUN=1;SAF=8;SAP=20.3821;SAR=0;SRF=53;SRP=118.098;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:42:34,8:34:1365:8:295:-14.2418,0,-110.462 0/0:7:7,0:7:276:0:0:0,-2.10721,-25.2067 0/0:12:12,0:12:483:0:0:0,-3.61236,-43.8207 dDocent_Contig_3665 9 . T A 2318.86 . AB=0.252358;ABP=228.864;AC=3;AF=0.5;AN=6;AO=107;CIGAR=1X;DP=424;DPB=424;DPRA=0;EPP=226.753;EPPR=689.196;GTI=0;LEN=1;MEANALT=1.33333;MQM=59.8879;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=0.813084;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=4048;QR=12105;RO=316;RPL=0;RPP=235.358;RPPR=689.196;RPR=107;RUN=1;SAF=106;SAP=226.753;SAR=1;SRF=316;SRP=689.196;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:256:198,58:198:7569:58:2192:-120.395,0,-603.973 0/1:52:34,17:34:1293:17:654:-43.4641,0,-100.927 0/1:116:84,32:84:3243:32:1202:-73.5502,0,-257.094 dDocent_Contig_3669 107 . N T 695.641 . AB=0;ABP=0;AC=6;AF=1;AN=6;AO=23;CIGAR=1X;DP=23;DPB=23;DPRA=0;EPP=52.9542;EPPR=0;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=0;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=757;QR=0;RO=0;RPL=0;RPP=52.9542;RPPR=0;RPR=23;RUN=1;SAF=0;SAP=52.9542;SAR=23;SRF=0;SRP=0;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 1/1:6:0,6:0:0:6:184:-16.8612,-1.80618,0 1/1:8:0,8:0:0:8:263:-23.9913,-2.40824,0 1/1:9:0,9:0:0:9:310:-28.2345,-2.70927,0 dDocent_Contig_3671 28 . C T 8212.19 . AB=0.163399;ABP=304.15;AC=3;AF=0.5;AN=6;AO=50;CIGAR=1X1M1X;DP=306;DPB=306;DPRA=0;EPP=111.584;EPPR=44.2683;GTI=0;LEN=1;MEANALT=2;MQM=60;MQMR=60;NS=3;NUMALT=2;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=1940;QR=753;RO=19;RPL=0;RPP=111.584;RPPR=44.2683;RPR=50;RUN=1;SAF=50;SAP=111.584;SAR=0;SRF=19;SRP=44.2683;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 1|0:153:12,30,111:12:474:30,111:1157,4250:-401.109,-309.715,-339.689,-55.9937,0,-61.5849 1|0:80:0,11,69:0:0:11,69:430,2595:-248.319,-212.964,-209.653,-35.7431,0,-14.972 1|0:73:7,9,57:7:279:9,57:353,2119:-177.314,-150.388,-170.657,-6.04803,0,-11.8681 dDocent_Contig_3672 7 . A C 63.5222 . AB=0.166667;ABP=20.3821;AC=1;AF=0.166667;AN=6;AO=3;CIGAR=1X3M2X;DP=47;DPB=47;DPRA=0;EPP=9.52472;EPPR=87.6977;GTI=0;LEN=1;MEANALT=2;MQM=60;MQMR=60;NS=3;NUMALT=2;ODDS=0;PAIRED=1;PAIREDR=0.948718;PAO=0;PQA=0;PQR=0;PRO=0;QA=115;QR=1529;RO=39;RPL=0;RPP=9.52472;RPPR=87.6977;RPR=3;RUN=1;SAF=3;SAP=9.52472;SAR=0;SRF=39;SRP=87.6977;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|0:13:11,0,2:11:432:0,2:0,81:-3.77234,-7.08367,-42.6053,0,-35.9243,-35.3222 0|0:16:14,0,2:14:545:0,2:0,81:-2.86925,-7.08367,-51.862,0,-45.1809,-44.5788 0|1:18:14,3,0:14:552:3,0:115,0:-5.21195,0,-44.5087,-9.42637,-45.4118,-54.8487 dDocent_Contig_3673 30 . G C 1525.48 . AB=0.169421;ABP=232.72;AC=3;AF=0.5;AN=6;AO=41;CIGAR=1X3M;DP=242;DPB=242;DPRA=0;EPP=92.0407;EPPR=324.388;GTI=0;LEN=1;MEANALT=2.66667;MQM=60;MQMR=60;NS=3;NUMALT=2;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=1650;QR=5823;RO=148;RPL=0;RPP=92.0407;RPPR=324.388;RPR=41;RUN=1;SAF=41;SAP=92.0407;SAR=0;SRF=148;SRP=324.388;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|1:142:79,42,21:79:3123:42,21:1662,851:-112.986,0,-244.347,-66.5891,-186.814,-317.265 0|1:39:23,7,7:23:890:7,7:269,275:-15.7006,-0.54371,-71.5407,0,-51.0287,-71.0018 0|1:61:46,2,13:46:1810:2,13:80,524:-29.345,-36.6028,-184.877,0,-142.287,-144.964 dDocent_Contig_3674 107 . N T 56.9965 . AB=0;ABP=0;AC=2;AF=1;AN=2;AO=2;CIGAR=1X;DP=2;DPB=2;DPRA=0;EPP=7.35324;EPPR=0;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=0;NS=1;NUMALT=1;ODDS=5.99146;PAIRED=1;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=60;QR=0;RO=0;RPL=0;RPP=7.35324;RPPR=0;RPR=2;RUN=1;SAF=0;SAP=7.35324;SAR=2;SRF=0;SRP=0;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 1/1:2:0,2:0:0:2:60:-5.69857,-0.60206,0 ./.:.:.:.:.:.:.:. ./.:.:.:.:.:.:.:. dDocent_Contig_3675 19 . A G 204.786 . AB=0.169014;ABP=70.5706;AC=2;AF=0.333333;AN=6;AO=12;CIGAR=1X;DP=78;DPB=78;DPRA=5.07143;EPP=29.068;EPPR=146.327;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=491;QR=2590;RO=66;RPL=0;RPP=29.068;RPPR=146.327;RPR=12;RUN=1;SAF=12;SAP=29.068;SAR=0;SRF=66;SRP=146.327;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:46:42,4:42:1657:4:164:-1.30252,0,-135.503 0/0:7:7,0:7:265:0:0:0,-2.10721,-24.2063 0/1:25:17,8:17:668:8:327:-22.2744,0,-52.9236 dDocent_Contig_3676 15 . T G 43.3345 . AB=0.230769;ABP=11.1951;AC=1;AF=0.166667;AN=6;AO=3;CIGAR=1X3M2D5M;DP=56;DPB=55.4545;DPRA=0.604651;EPP=9.52472;EPPR=115.927;GTI=0;LEN=1;MEANALT=2;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=0;PAIREDR=0.865385;PAO=0;PQA=0;PQR=0;PRO=0;QA=109;QR=2006;RO=52;RPL=0;RPP=9.52472;RPPR=115.927;RPR=3;RUN=1;SAF=3;SAP=9.52472;SAR=0;SRF=52;SRP=115.927;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|0:31:31,0:31:1203:0:0:0,-9.33193,-108.557 0|0:12:12,0:12:452:0:0:0,-3.61236,-41.0257 0|1:13:9,3:9:351:3:109:-6.15733,0,-27.9314 dDocent_Contig_3677 8 . T G 409.327 . AB=0.180556;ABP=130.645;AC=2;AF=0.333333;AN=6;AO=26;CIGAR=1X;DP=162;DPB=162;DPRA=4;EPP=59.4686;EPPR=298.331;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=0.846154;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=968;QR=5231;RO=136;RPL=0;RPP=59.4686;RPPR=298.331;RPR=26;RUN=1;SAF=26;SAP=59.4686;SAR=0;SRF=136;SRP=298.331;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:103:84,19:84:3225:19:704:-32.6785,0,-259.391 0/0:18:18,0:18:683:0:0:0,-5.41854,-61.8015 0/1:41:34,7:34:1323:7:264:-11.7771,0,-107.013 dDocent_Contig_3678 52 . A C 1579.67 . AB=0.426829;ABP=6.82362;AC=4;AF=0.666667;AN=6;AO=53;CIGAR=1X;DP=101;DPB=101;DPRA=0;EPP=118.098;EPPR=107.241;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=2100;QR=1828;RO=48;RPL=53;RPP=118.098;RPPR=107.241;RPR=0;RUN=1;SAF=53;SAP=118.098;SAR=0;SRF=48;SRP=107.241;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:58:31,27:31:1152:27:1073:-79.396,0,-86.4934 1/1:19:1,18:1:38:18:710:-60.4245,-1.9223,0 0/1:24:16,8:16:638:8:317:-21.6691,0,-50.5299 dDocent_Contig_3679 107 . N A 66.4848 . AB=0;ABP=0;AC=2;AF=1;AN=2;AO=2;CIGAR=1X;DP=2;DPB=2;DPRA=0;EPP=7.35324;EPPR=0;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=0;NS=1;NUMALT=1;ODDS=5.99146;PAIRED=1;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=70;QR=0;RO=0;RPL=0;RPP=7.35324;RPPR=0;RPR=2;RUN=1;SAF=0;SAP=7.35324;SAR=2;SRF=0;SRP=0;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL ./.:.:.:.:.:.:.:. ./.:.:.:.:.:.:.:. 1/1:2:0,2:0:0:2:70:-6.6474,-0.60206,0 dDocent_Contig_3681 143 . A C 381.66 . AB=0.5;ABP=3.0103;AC=1;AF=0.166667;AN=6;AO=14;CIGAR=1X;DP=57;DPB=57;DPRA=1.93103;EPP=33.4109;EPPR=96.3836;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=531;QR=1700;RO=43;RPL=0;RPP=33.4109;RPPR=96.3836;RPR=14;RUN=1;SAF=0;SAP=33.4109;SAR=14;SRF=0;SRP=96.3836;SRR=43;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:28:14,14:14:557:14:531:-39.6889,0,-42.0445 0/0:14:14,0:14:557:0:0:0,-4.21442,-50.473 0/0:15:15,0:15:586:0:0:0,-4.51545,-53.0712 dDocent_Contig_3682 25 . G C 2920.78 . AB=0.538889;ABP=5.37479;AC=3;AF=0.5;AN=6;AO=97;CIGAR=1X;DP=180;DPB=180;DPRA=0;EPP=213.643;EPPR=183.243;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=3900;QR=3304;RO=83;RPL=0;RPP=213.643;RPPR=183.243;RPR=97;RUN=1;SAF=97;SAP=213.643;SAR=0;SRF=83;SRP=183.243;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:104:43,61:43:1732:61:2464:-190.589,0,-124.791 0/1:28:10,18:10:394:18:722:-56.8765,0,-27.3852 0/1:48:30,18:30:1178:18:714:-50.1348,0,-91.8497 dDocent_Contig_3683 11 . G A 9046.47 . AB=0.835329;ABP=329.225;AC=3;AF=0.5;AN=6;AO=279;CIGAR=1X;DP=334;DPB=334;DPRA=0;EPP=608.851;EPPR=118.098;GTI=0;LEN=1;MEANALT=1.33333;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=11228;QR=2092;RO=53;RPL=0;RPP=608.851;RPPR=118.098;RPR=279;RUN=1;SAF=279;SAP=608.851;SAR=0;SRF=53;SRP=118.098;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:200:38,160:38:1497:160:6431:-518.493,0,-74.9651 0/1:47:6,41:6:239:41:1639:-133.59,0,-7.73551 0/1:87:9,78:9:356:78:3158:-258.087,0,-6.20889 dDocent_Contig_3684 13 . A G 38.8702 . AB=0.230769;ABP=11.1951;AC=1;AF=0.166667;AN=6;AO=3;CIGAR=1M1X1M;DP=128;DPB=137.333;DPRA=0.226087;EPP=9.52472;EPPR=259.244;GTI=0;LEN=1;MEANALT=2;MQM=60;MQMR=60;NS=3;NUMALT=2;ODDS=0;PAIRED=1;PAIREDR=0.983051;PAO=0;PQA=0;PQR=0;PRO=0;QA=104;QR=4671;RO=118;RPL=0;RPP=9.52472;RPPR=259.244;RPR=3;RUN=1;SAF=3;SAP=9.52472;SAR=0;SRF=118;SRP=259.244;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|0:79:74,5,0:74:2940:5,0:191,0:0,-6.22511,-247.152,-22.2762,-248.657,-264.325 0|1:13:9,1,3:9:341:1,3:39,104:-5.71087,-5.20348,-32.8793,0,-24.7358,-27.0397 0|0:36:35,1,0:35:1390:1,0:40,0:0,-6.8414,-121.368,-10.536,-121.669,-124.964 dDocent_Contig_3685 49 . T A 37.5469 . AB=0.285714;ABP=5.80219;AC=1;AF=0.166667;AN=6;AO=3;CIGAR=1X;DP=55;DPB=55;DPRA=0.947368;EPP=9.52472;EPPR=115.927;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=122;QR=2051;RO=52;RPL=0;RPP=9.52472;RPPR=115.927;RPR=3;RUN=1;SAF=3;SAP=9.52472;SAR=0;SRF=52;SRP=115.927;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:29:28,1:28:1094:1:41:0,-4.6353,-94.6441 0/1:7:5,2:5:202:2:81:-5.57852,0,-16.4549 0/0:19:19,0:19:755:0:0:0,-5.71957,-68.2656 dDocent_Contig_3686 70 . A T 140.871 . AB=0.216216;ABP=28.8919;AC=2;AF=0.333333;AN=6;AO=8;CIGAR=1X;DP=44;DPB=44;DPRA=2.64286;EPP=20.3821;EPPR=81.1833;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=3.46945e-18;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=311;QR=1418;RO=36;RPL=8;RPP=20.3821;RPPR=81.1833;RPR=0;RUN=1;SAF=8;SAP=20.3821;SAR=0;SRF=36;SRP=81.1833;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:25:22,3:22:865:3:117:-3.38354,0,-70.6371 0/0:7:7,0:7:283:0:0:0,-2.10721,-25.8434 0/1:12:7,5:7:270:5:194:-14.2205,0,-21.0529 dDocent_Contig_3687 25 . A G 9497.01 . AB=0.101983;ABP=488.737;AC=2;AF=0.333333;AN=6;AO=36;CIGAR=1X3M1X3M;DP=353;DPB=353;DPRA=0;EPP=81.1833;EPPR=55.1256;GTI=0;LEN=1;MEANALT=4;MQM=60;MQMR=60;NS=3;NUMALT=3;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=1417;QR=954;RO=24;RPL=0;RPP=81.1833;RPPR=55.1256;RPR=36;RUN=1;SAF=36;SAP=81.1833;SAR=0;SRF=24;SRP=55.1256;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 1|0:221:13,20,2,183:13:517:20,2,183:789,81,7350:-624.066,-563.065,-599.612,-621.301,-598.953,-663.266,-22.3452,0,-58.2337,-9.8248 0|0:58:7,7,8,36:7:279:7,8,36:268,311,1446:-119.63,-99.7479,-120.617,-96.1839,-97.1711,-116.752,-2.57401,-3.56592,0,-14.7173 1|0:74:4,9,1,60:4:158:9,1,60:360,40,2382:-211.527,-183.076,-193.368,-209.436,-192.782,-222.136,-16.6568,0,-26.3619,-11.5953 dDocent_Contig_3688 187 . A G 6178.32 . AB=0.899441;ABP=251.08;AC=4;AF=0.666667;AN=6;AO=189;CIGAR=1X;DP=208;DPB=208;DPRA=0;EPP=413.419;EPPR=44.2683;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=7543;QR=748;RO=19;RPL=189;RPP=413.419;RPPR=44.2683;RPR=0;RUN=1;SAF=0;SAP=413.419;SAR=189;SRF=0;SRP=44.2683;SRR=19;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:125:13,112:13:504:112:4455:-363.255,0,-8.0717 1/1:29:1,28:1:41:28:1131:-97.9766,-4.6353,0 0/1:54:5,49:5:203:49:1957:-160.07,0,-2.39743 dDocent_Contig_3690 33 . G T 127.754 . AB=0.139241;ABP=92.3155;AC=2;AF=0.333333;AN=6;AO=14;CIGAR=1X;DP=184;DPB=184;DPRA=0;EPP=33.4109;EPPR=372.161;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=545;QR=6784;RO=170;RPL=0;RPP=33.4109;RPPR=372.161;RPR=14;RUN=1;SAF=14;SAP=33.4109;SAR=0;SRF=170;SRP=372.161;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:105:102,3:102:4098:3:108:0,-21.5375,-358.713 0/1:32:28,4:28:1113:4:158:-4.96694,0,-90.8165 0/1:47:40,7:40:1573:7:279:-11.3311,0,-127.657 dDocent_Contig_3691 16 . C T 55.4149 . AB=0.0983607;ABP=173.951;AC=1;AF=0.166667;AN=6;AO=27;CIGAR=1X;DP=368;DPB=368;DPRA=0;EPP=61.6401;EPPR=743.482;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=1091;QR=13603;RO=341;RPL=0;RPP=61.6401;RPPR=743.482;RPR=27;RUN=1;SAF=27;SAP=61.6401;SAR=0;SRF=341;SRP=743.482;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:169:159,10:159:6340:10:405:0,-14.064,-533.528 0/0:77:72,5:72:2853:5:200:0,-4.79977,-238.498 0/1:122:110,12:110:4410:12:486:-7.3654,0,-360.108 dDocent_Contig_3692 8 . T G 5968.15 . AB=0.757576;ABP=155.145;AC=3;AF=0.5;AN=6;AO=200;CIGAR=1X;DP=264;DPB=264;DPRA=0;EPP=437.305;EPPR=141.985;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=7569;QR=2433;RO=64;RPL=0;RPP=437.305;RPPR=141.985;RPR=200;RUN=1;SAF=200;SAP=437.305;SAR=0;SRF=64;SRP=141.985;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:150:33,117:33:1247:117:4438:-354.325,0,-67.3695 0/1:38:7,31:7:273:31:1175:-94.6106,0,-13.4989 0/1:76:24,52:24:913:52:1956:-153.403,0,-59.6048 dDocent_Contig_3694 111 . A G 349.423 . AB=0.193103;ABP=121.633;AC=3;AF=0.5;AN=6;AO=28;CIGAR=1X;DP=145;DPB=145;DPRA=0;EPP=63.8115;EPPR=257.073;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=0.991453;PAO=0;PQA=0;PQR=0;PRO=0;QA=924;QR=3985;RO=117;RPL=0;RPP=63.8115;RPPR=257.073;RPR=28;RUN=1;SAF=0;SAP=63.8115;SAR=28;SRF=0;SRP=257.073;SRR=117;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:90:71,19:71:2411:19:634:-30.2812,0,-190.158 0/1:24:20,4:20:680:4:138:-5.53568,0,-54.2937 0/1:31:26,5:26:894:5:152:-4.64794,0,-71.4423 dDocent_Contig_3695 11 . C T 1064.13 . AB=0.30137;ABP=53.0434;AC=3;AF=0.5;AN=6;AO=44;CIGAR=1X;DP=146;DPB=146;DPRA=0;EPP=98.5551;EPPR=224.5;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=6.93889e-18;PAIRED=0.977273;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=1721;QR=4082;RO=102;RPL=0;RPP=98.5551;RPPR=224.5;RPR=44;RUN=1;SAF=44;SAP=98.5551;SAR=0;SRF=102;SRP=224.5;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:94:74,20:74:2981:20:807:-44.6501,0,-240.073 0/1:22:9,13:9:350:13:475:-36.4518,0,-25.2286 0/1:30:19,11:19:751:11:439:-30.8343,0,-58.8741 dDocent_Contig_3696 64 . T A 207.277 . AB=0.217391;ABP=50.8771;AC=2;AF=0.333333;AN=6;AO=21;CIGAR=1X;DP=135;DPB=135;DPRA=0;EPP=48.6112;EPPR=250.558;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=6.93889e-18;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=703;QR=3899;RO=114;RPL=21;RPP=48.6112;RPPR=250.558;RPR=0;RUN=1;SAF=21;SAP=48.6112;SAR=0;SRF=114;SRP=250.558;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:66:60,6:60:2083:6:210:0,-0.625518,-168.503 0/1:33:28,5:28:954:5:175:-6.1597,0,-76.2336 0/1:36:26,10:26:862:10:318:-18.0906,0,-67.0468 dDocent_Contig_3697 57 . C G 891.685 . AB=0.227027;ABP=122.746;AC=2;AF=0.333333;AN=6;AO=46;CIGAR=1X;DP=231;DPB=231;DPRA=0;EPP=102.898;EPPR=404.733;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=1.38778e-17;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=1789;QR=7263;RO=185;RPL=46;RPP=102.898;RPPR=404.733;RPR=0;RUN=1;SAF=46;SAP=102.898;SAR=0;SRF=185;SRP=404.733;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:146:110,36:110:4318:36:1426:-84.6473,0,-344.635 0/1:39:33,6:33:1295:6:216:-8.04332,0,-105.086 0/0:46:42,4:42:1650:4:147:0,-0.261366,-135.139 dDocent_Contig_3698 68 . A G 65.383 . AB=0.3;ABP=6.48466;AC=1;AF=0.166667;AN=6;AO=3;CIGAR=1X;DP=30;DPB=30;DPRA=1;EPP=9.52472;EPPR=61.6401;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=122;QR=983;RO=27;RPL=3;RPP=9.52472;RPPR=61.6401;RPR=0;RUN=1;SAF=3;SAP=9.52472;SAR=0;SRF=27;SRP=61.6401;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:7:7,0:7:246:0:0:0,-2.10721,-22.4681 0/1:10:7,3:7:255:3:122:-8.36219,0,-20.2844 0/0:13:13,0:13:482:0:0:0,-3.91339,-43.716 dDocent_Contig_3699 36 . T A 103.24 . AB=0.145455;ABP=63.0614;AC=2;AF=0.333333;AN=6;AO=8;CIGAR=1X;DP=83;DPB=83;DPRA=0.982143;EPP=20.3821;EPPR=165.871;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=321;QR=2986;RO=75;RPL=0;RPP=20.3821;RPPR=165.871;RPR=8;RUN=1;SAF=8;SAP=20.3821;SAR=0;SRF=75;SRP=165.871;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:23:18,5:18:703:5:204:-11.8203,0,-56.6678 0/1:32:29,3:29:1159:3:117:-1.27687,0,-94.9562 0/0:28:28,0:28:1124:0:0:0,-8.42884,-101.443 dDocent_Contig_3700 11 . C T 551.052 . AB=0.20438;ABP=107.003;AC=2;AF=0.333333;AN=6;AO=33;CIGAR=1X;DP=197;DPB=197;DPRA=0;EPP=74.6689;EPPR=356.96;GTI=0;LEN=1;MEANALT=1.33333;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=1298;QR=6525;RO=163;RPL=0;RPP=74.6689;RPPR=356.96;RPR=33;RUN=1;SAF=33;SAP=74.6689;SAR=0;SRF=163;SRP=356.96;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:95:80,15:80:3201:15:589:-24.7522,0,-259.558 0/1:42:29,13:29:1174:13:513:-33.8744,0,-93.292 0/0:60:54,5:54:2150:5:196:0,-0.0191484,-175.681 dDocent_Contig_3701 72 . T G 2232.99 . AB=0.752475;ABP=58.9311;AC=3;AF=0.5;AN=6;AO=76;CIGAR=1X;DP=101;DPB=101;DPRA=0;EPP=168.042;EPPR=57.2971;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=2870;QR=963;RO=25;RPL=76;RPP=168.042;RPPR=57.2971;RPR=0;RUN=1;SAF=76;SAP=168.042;SAR=0;SRF=25;SRP=57.2971;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:59:15,44:15:581:44:1658:-131.713,0,-34.8696 0/1:18:4,14:4:157:14:541:-43.6137,0,-9.09026 0/1:24:6,18:6:225:18:671:-53.4949,0,-13.3861 dDocent_Contig_3702 8 . T G 53.2587 . AB=0.121212;ABP=85.263;AC=1;AF=0.166667;AN=6;AO=8;CIGAR=1X;DP=98;DPB=98;DPRA=4.125;EPP=20.3821;EPPR=198.443;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=293;QR=3430;RO=90;RPL=0;RPP=20.3821;RPPR=198.443;RPR=8;RUN=1;SAF=8;SAP=20.3821;SAR=0;SRF=90;SRP=198.443;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:66:58,8:58:2199:8:293:-6.84873,0,-178.27 0/0:6:6,0:6:233:0:0:0,-1.80618,-21.3401 0/0:26:26,0:26:998:0:0:0,-7.82678,-90.1309 dDocent_Contig_3703 17 . G A 1372.94 . AB=0.390625;ABP=16.3106;AC=3;AF=0.5;AN=6;AO=50;CIGAR=1X;DP=128;DPB=128;DPRA=0;EPP=111.584;EPPR=172.385;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=6.93889e-18;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=2004;QR=3128;RO=78;RPL=0;RPP=111.584;RPPR=172.385;RPR=50;RUN=1;SAF=50;SAP=111.584;SAR=0;SRF=78;SRP=172.385;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:57:39,18:39:1565:18:724:-48.3268,0,-123.926 0/1:37:24,13:24:959:13:530:-36.9083,0,-75.4722 0/1:34:15,19:15:604:19:750:-57.5816,0,-44.463 dDocent_Contig_3705 44 . A G 3094.78 . AB=0.744361;ABP=71.9913;AC=3;AF=0.5;AN=6;AO=99;CIGAR=1X;DP=133;DPB=133;DPRA=0;EPP=217.986;EPPR=76.8404;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=3936;QR=1341;RO=34;RPL=0;RPP=217.986;RPPR=76.8404;RPR=99;RUN=1;SAF=99;SAP=217.986;SAR=0;SRF=34;SRP=76.8404;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:82:21,61:21:816:61:2437:-194.79,0,-49.0572 0/1:24:10,14:10:405:14:562:-43.6967,0,-29.5857 0/1:27:3,24:3:120:24:937:-76.5024,0,-3.0595 dDocent_Contig_3707 56 . T A 1791.43 . AB=0.456522;ABP=5.27618;AC=3;AF=0.5;AN=6;AO=63;CIGAR=1X;DP=138;DPB=138;DPRA=0;EPP=139.813;EPPR=165.871;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=6.93889e-18;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=2503;QR=3013;RO=75;RPL=63;RPP=139.813;RPPR=165.871;RPR=0;RUN=1;SAF=63;SAP=139.813;SAR=0;SRF=75;SRP=165.871;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:74:42,32:42:1677:32:1265:-91.8471,0,-128.879 0/1:20:10,10:10:405:10:390:-29.4325,0,-30.79 0/1:44:23,21:23:931:21:848:-63.3861,0,-70.8469 dDocent_Contig_3708 23 . C T 30.7707 . AB=0.25;ABP=7.35324;AC=1;AF=0.166667;AN=6;AO=5;CIGAR=1X;DP=60;DPB=60;DPRA=1.64286;EPP=6.91895;EPPR=122.441;GTI=0;LEN=1;MEANALT=1;MQM=51.6;MQMR=60;NS=3;NUMALT=1;ODDS=3.46945e-18;PAIRED=0.4;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=181;QR=2217;RO=55;RPL=0;RPP=13.8677;RPPR=122.441;RPR=5;RUN=1;SAF=1;SAP=6.91895;SAR=4;SRF=55;SRP=122.441;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:38:35,3:35:1406:3:104:0,-1.81921,-117.174 0/1:8:6,2:6:242:2:77:-4.90059,0,-19.7487 0/0:14:14,0:14:569:0:0:0,-4.21442,-51.5523 dDocent_Contig_3710 19 . T C 3817.54 . AB=0.25;ABP=96.3836;AC=2;AF=0.333333;AN=6;AO=43;CIGAR=2M1D1M1X;DP=172;DPB=140.8;DPRA=0;EPP=96.3836;EPPR=50.7827;GTI=0;LEN=1;MEANALT=2.66667;MQM=60;MQMR=60;NS=3;NUMALT=3;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=1718;QR=857;RO=22;RPL=0;RPP=96.3836;RPPR=50.7827;RPR=43;RUN=1;SAF=43;SAP=96.3836;SAR=0;SRF=22;SRP=50.7827;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 1|0:93:13,31,6,42:13:508:31,6,42:1247,230,1624:-190.469,-91.6075,-124.038,-175.509,-114.496,-215.464,-61.0175,0,-83.9044,-90.1337 1|0:18:0,6,0,12:0:0:6,0,12:237,0,447:-56.4661,-36.9561,-35.1499,-56.4661,-36.9561,-56.4661,-19.8971,0,-19.8971,-16.2848 0|0:61:9,6,0,46:9:349:6,0,46:234,0,1745:-140.342,-123.815,-150.682,-143.051,-152.489,-171.724,0,-9.4349,-28.6704,-14.8231 dDocent_Contig_3711 20 . T A 33.7705 . AB=0.166667;ABP=20.3821;AC=2;AF=0.333333;AN=6;AO=3;CIGAR=1X;DP=38;DPB=38;DPRA=0.45;EPP=9.52472;EPPR=79.0118;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=0.666667;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=121;QR=1417;RO=35;RPL=0;RPP=9.52472;RPPR=79.0118;RPR=3;RUN=1;SAF=3;SAP=9.52472;SAR=0;SRF=35;SRP=79.0118;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:10:9,1:9:357:1:41:-1.08427,0,-29.4819 0/1:8:6,2:6:245:2:80:-5.18355,0,-20.0212 0/0:20:20,0:20:815:0:0:0,-6.0206,-73.6636 dDocent_Contig_3712 83 . C T 132.301 . AB=0.461538;ABP=3.17734;AC=1;AF=0.166667;AN=6;AO=6;CIGAR=1X;DP=59;DPB=59;DPRA=0.565217;EPP=16.0391;EPPR=118.098;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=207;QR=1932;RO=53;RPL=6;RPP=16.0391;RPPR=118.098;RPR=0;RUN=1;SAF=6;SAP=16.0391;SAR=0;SRF=53;SRP=118.098;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:38:38,0:38:1392:0:0:0,-11.4391,-125.575 0/0:8:8,0:8:294:0:0:0,-2.40824,-26.8124 0/1:13:7,6:7:246:6:207:-15.054,0,-18.5689 dDocent_Contig_3713 39 . T C 268.996 . AB=0.216667;ABP=44.8473;AC=1;AF=0.166667;AN=6;AO=16;CIGAR=1X;DP=165;DPB=165;DPRA=3.84211;EPP=37.7539;EPPR=326.56;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=638;QR=5932;RO=149;RPL=0;RPP=37.7539;RPPR=326.56;RPR=16;RUN=1;SAF=16;SAP=37.7539;SAR=0;SRF=149;SRP=326.56;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:86:83,3:83:3303:3:122:0,-14.5161,-285.96 0/0:19:19,0:19:752:0:0:0,-5.71957,-68.0045 0/1:60:47,13:47:1877:13:516:-28.7235,0,-151.068 dDocent_Contig_3715 10 . G T 4839.73 . AB=0.043956;ABP=989.336;AC=0;AF=0;AN=6;AO=24;CIGAR=1M1X7M;DP=546;DPB=547.667;DPRA=0;EPP=55.1256;EPPR=561.079;GTI=0;LEN=1;MEANALT=8;MQM=60;MQMR=59.8132;NS=3;NUMALT=5;ODDS=0;PAIRED=0.916667;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=961;QR=9600;RO=257;RPL=0;RPP=55.1256;RPPR=561.079;RPR=24;RUN=1;SAF=24;SAP=55.1256;SAR=0;SRF=257;SRP=561.079;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|0:330:164,5,13,7,0,130:164:6130:5,13,7,0,130:189,512,282,0,4915:-353.5,-387.377,-887.815,-360.748,-847.2,-858.779,-379.625,-866.077,-839.448,-879.462,-402.869,-889.32,-862.692,-881.569,-904.813,0,-486.441,-459.812,-478.689,-501.933,-462.799 0|0:72:23,1,4,8,14,21:23:845:1,4,8,14,21:37,149,320,562,781:-56.987,-60.884,-129.656,-51.7145,-117.76,-119.583,-37.548,-103.594,-94.4242,-104.213,-17.5965,-83.6437,-74.4735,-60.3067,-82.4562,0,-66.0392,-56.8696,-42.703,-22.7512,-62.7444 0|0:144:70,9,15,9,2,32:70:2625:9,15,9,2,32:351,601,359,82,1220:-79.0085,-71.227,-283.249,-50.5635,-236.443,-260.781,-70.5147,-256.393,-235.731,-282.538,-93.3117,-279.19,-258.528,-278.478,-307.441,0,-185.874,-165.212,-185.163,-207.96,-205.095 dDocent_Contig_3717 39 . T A 2616.03 . AB=0.489247;ABP=3.19709;AC=3;AF=0.5;AN=6;AO=91;CIGAR=1X;DP=186;DPB=186;DPRA=0;EPP=200.614;EPPR=209.3;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=0.923077;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=3581;QR=3512;RO=95;RPL=0;RPP=200.614;RPPR=209.3;RPR=91;RUN=1;SAF=91;SAP=200.614;SAR=0;SRF=95;SRP=209.3;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:119:57,62:57:2093:62:2448:-184.654,0,-152.779 0/1:19:9,10:9:331:10:384:-29.1935,0,-24.4189 0/1:48:29,19:29:1088:19:749:-53.279,0,-83.7767 dDocent_Contig_3718 50 . T G 2662.22 . AB=0.289062;ABP=151.417;AC=3;AF=0.5;AN=6;AO=111;CIGAR=1X;DP=384;DPB=384;DPRA=0;EPP=244.044;EPPR=593.651;GTI=0;LEN=1;MEANALT=1.33333;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=4293;QR=9571;RO=272;RPL=111;RPP=244.044;RPPR=593.651;RPR=0;RUN=1;SAF=111;SAP=244.044;SAR=0;SRF=272;SRP=593.651;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:242:172,69:172:6058:69:2708:-171.22,0,-472.613 0/1:55:29,26:29:1017:26:984:-72.2998,0,-75.274 0/1:87:71,16:71:2496:16:601:-28.2258,0,-198.672 dDocent_Contig_3719 107 . N C 225.861 . AB=0;ABP=0;AC=4;AF=1;AN=4;AO=7;CIGAR=1X;DP=7;DPB=7;DPRA=0;EPP=18.2106;EPPR=0;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=0;NS=2;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=240;QR=0;RO=0;RPL=0;RPP=18.2106;RPPR=0;RPR=7;RUN=1;SAF=0;SAP=18.2106;SAR=7;SRF=0;SRP=0;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 1/1:6:0,6:0:0:6:205:-18.7853,-1.80618,0 ./.:.:.:.:.:.:.:. 1/1:1:0,1:0:0:1:35:-3.49863,-0.30103,0 dDocent_Contig_3720 61 . A T 130.742 . AB=0.173913;ABP=45.4956;AC=1;AF=0.166667;AN=6;AO=10;CIGAR=1X;DP=79;DPB=79;DPRA=3.88889;EPP=24.725;EPPR=150.67;GTI=0;LEN=1;MEANALT=1.5;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=386;QR=2627;RO=68;RPL=10;RPP=24.725;RPPR=150.67;RPR=0;RUN=1;SAF=10;SAP=24.725;SAR=0;SRF=68;SRP=150.67;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:46:38,8:38:1481:8:312:-14.5963,0,-119.685 0/0:9:9,0:9:362:0:0:0,-2.70927,-32.9442 0/0:24:21,2:21:784:2:74:0,-0.267597,-63.8519 dDocent_Contig_3721 16 . C A 61.0127 . AB=0.166667;ABP=26.1727;AC=1;AF=0.166667;AN=6;AO=4;CIGAR=1X;DP=75;DPB=75;DPRA=0.941176;EPP=11.6962;EPPR=157.185;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=164;QR=2856;RO=71;RPL=0;RPP=11.6962;RPPR=157.185;RPR=4;RUN=1;SAF=4;SAP=11.6962;SAR=0;SRF=71;SRP=157.185;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:37:37,0:37:1476:0:0:0,-11.1381,-133.089 0/1:24:20,4:20:811:4:164:-7.92518,0,-66.0807 0/0:14:14,0:14:569:0:0:0,-4.21442,-51.5521 dDocent_Contig_3722 30 . C T 1385.17 . AB=0.0875;ABP=121.247;AC=0;AF=0;AN=6;AO=7;CIGAR=9M1X2M1X;DP=151;DPB=152.692;DPRA=0;EPP=18.2106;EPPR=163.699;GTI=0;LEN=1;MEANALT=4;MQM=60;MQMR=60;NS=3;NUMALT=3;ODDS=2.77556e-17;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=281;QR=2875;RO=74;RPL=0;RPP=18.2106;RPPR=163.699;RPR=7;RUN=1;SAF=7;SAP=18.2106;SAR=0;SRF=74;SRP=163.699;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|0:71:36,0,6,28:36:1388:0,6,28:0,212,1127:-82.084,-92.9211,-206.89,-75.6647,-189.629,-187.823,0,-114.001,-96.7408,-105.572 0|0:16:6,1,1,7:6:235:1,1,7:39,31,273:-20.6507,-19.2502,-38.277,-19.9764,-36.0949,-38.9997,0,-16.1356,-16.8629,-17.2352 0|0:64:32,6,9,16:32:1252:6,9,16:242,291,620:-41.3052,-30.9826,-132.131,-27.494,-110.484,-127.725,0,-83.0112,-79.5127,-98.1465 dDocent_Contig_3723 7 . A G 4781.13 . AB=0.6;ABP=31.2394;AC=3;AF=0.5;AN=6;AO=195;CIGAR=1X1M;DP=325;DPB=325;DPRA=0;EPP=426.447;EPPR=172.385;GTI=0;LEN=1;MEANALT=3.66667;MQM=57.5487;MQMR=59.2051;NS=3;NUMALT=2;ODDS=0;PAIRED=0.302564;PAIREDR=0.538462;PAO=0;PQA=0;PQR=0;PRO=0;QA=6318;QR=2958;RO=78;RPL=0;RPP=426.447;RPPR=172.385;RPR=195;RUN=1;SAF=195;SAP=426.447;SAR=0;SRF=78;SRP=172.385;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|1:103:32,19,48:32:1228:19,48:621,1512:-110.857,-70.344,-165.409,0,-50.6693,-86.3456 0|1:123:21,5,89:21:787:5,89:170,2980:-233.726,-226.261,-289.17,0,-50.669,-37.6623 0|1:99:25,15,58:25:943:15,58:497,1826:-139.054,-106.381,-179.145,0,-37.1144,-59.8363 dDocent_Contig_3724 27 . C T 84.9253 . AB=0.119565;ABP=118.665;AC=2;AF=0.333333;AN=6;AO=13;CIGAR=1X;DP=151;DPB=151;DPRA=0;EPP=31.2394;EPPR=302.673;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=514;QR=5467;RO=138;RPL=0;RPP=31.2394;RPPR=302.673;RPR=13;RUN=1;SAF=13;SAP=31.2394;SAR=0;SRF=138;SRP=302.673;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:59:57,2:57:2266:2:81:0,-10.075,-196.417 0/1:32:28,4:28:1112:4:153:-4.50499,0,-90.7327 0/1:60:53,7:53:2089:7:280:-7.50997,0,-170.129 dDocent_Contig_3725 14 . T C 761.172 . AB=0.244444;ABP=79.5909;AC=2;AF=0.333333;AN=6;AO=37;CIGAR=1X;DP=197;DPB=197;DPRA=0;EPP=83.3548;EPPR=350.446;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=0.945946;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=1492;QR=6437;RO=160;RPL=0;RPP=83.3548;RPPR=350.446;RPR=37;RUN=1;SAF=37;SAP=83.3548;SAR=0;SRF=160;SRP=350.446;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:115:89,26:89:3567:26:1043:-59.5459,0,-286.431 0/1:20:13,7:13:529:7:286:-20.0942,0,-41.9363 0/0:62:58,4:58:2341:4:163:0,-3.60543,-195.781 dDocent_Contig_3726 16 . C A 45.6034 . AB=0.111111;ABP=73.9451;AC=1;AF=0.166667;AN=6;AO=6;CIGAR=1X;DP=81;DPB=81;DPRA=4;EPP=16.0391;EPPR=165.871;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=244;QR=3018;RO=75;RPL=0;RPP=16.0391;RPPR=165.871;RPR=6;RUN=1;SAF=6;SAP=16.0391;SAR=0;SRF=75;SRP=165.871;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:54:48,6:48:1944:6:244:-6.08321,0,-158.896 0/0:15:15,0:15:607:0:0:0,-4.51545,-54.9681 0/0:12:12,0:12:467:0:0:0,-3.61236,-42.3735 dDocent_Contig_3727 21 . G T 4240.26 . AB=0.355353;ABP=82.7909;AC=3;AF=0.5;AN=6;AO=156;CIGAR=1X;DP=439;DPB=439;DPRA=0;EPP=341.76;EPPR=617.537;GTI=0;LEN=1;MEANALT=1;MQM=56.8205;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=6250;QR=11256;RO=283;RPL=0;RPP=341.76;RPPR=617.537;RPR=156;RUN=1;SAF=156;SAP=341.76;SAR=0;SRF=283;SRP=617.537;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:239:149,90:149:5933:90:3649:-255.705,0,-461.811 0/1:77:58,19:58:2324:19:759:-45.1313,0,-186.143 0/1:123:76,47:76:2999:47:1842:-128.712,0,-232.978 dDocent_Contig_3728 34 . C T 10927.4 . AB=0.353093;ABP=221.21;AC=3;AF=0.5;AN=6;AO=411;CIGAR=1X3M1X;DP=1164;DPB=1164;DPRA=0;EPP=895.485;EPPR=1622.93;GTI=0;LEN=1;MEANALT=3;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=5.55112e-17;PAIRED=1;PAIREDR=0.997319;PAO=0;PQA=0;PQR=0;PRO=0;QA=16084;QR=29138;RO=746;RPL=0;RPP=895.485;RPPR=1622.93;RPR=411;RUN=1;SAF=411;SAP=895.485;SAR=0;SRF=746;SRP=1622.93;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|1:702:455,243:455:17800:243:9515:-645.417,0,-1390.34 0|1:221:141,77:141:5460:77:2987:-202.945,0,-425.299 0|1:241:150,91:150:5878:91:3582:-249.899,0,-456.335 dDocent_Contig_3729 10 . G A 341.66 . AB=0.102142;ABP=837.575;AC=2;AF=0.333333;AN=6;AO=66;CIGAR=1X;DP=747;DPB=747;DPRA=0;EPP=146.327;EPPR=1479.61;GTI=0;LEN=1;MEANALT=1.33333;MQM=59.2576;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=0.0151515;PAIREDR=0.995588;PAO=0;PQA=0;PQR=0;PRO=0;QA=2606;QR=26907;RO=680;RPL=0;RPP=146.327;RPPR=1479.61;RPR=66;RUN=1;SAF=66;SAP=146.327;SAR=0;SRF=680;SRP=1479.61;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:443:395,47:395:15668:47:1859:-34.0757,0,-1275.59 0/0:140:136,4:136:5361:4:162:0,-27.1772,-467.379 0/1:164:149,15:149:5878:15:585:-3.60958,0,-479.447 dDocent_Contig_3730 22 . C T 253.549 . AB=0.17;ABP=97.5996;AC=3;AF=0.5;AN=6;AO=17;CIGAR=1X;DP=100;DPB=100;DPRA=0;EPP=39.9253;EPPR=183.243;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=0.987952;PAO=0;PQA=0;PQR=0;PRO=0;QA=665;QR=3261;RO=83;RPL=0;RPP=39.9253;RPPR=183.243;RPR=17;RUN=1;SAF=17;SAP=39.9253;SAR=0;SRF=83;SRP=183.243;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:41:31,10:31:1206:10:383:-22.4697,0,-96.4696 0/1:31:27,4:27:1073:4:159:-5.3589,0,-87.52 0/1:28:25,3:25:982:3:123:-3.03595,0,-80.2393 dDocent_Contig_3731 24 . T G 886.038 . AB=0.190871;ABP=203.047;AC=3;AF=0.5;AN=6;AO=46;CIGAR=1X;DP=241;DPB=241;DPRA=0;EPP=102.898;EPPR=426.447;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=1841;QR=7874;RO=195;RPL=0;RPP=102.898;RPPR=426.447;RPR=46;RUN=1;SAF=46;SAP=102.898;SAR=0;SRF=195;SRP=426.447;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:157:130,27:130:5256:27:1097:-51.7511,0,-425.601 0/1:37:31,6:31:1237:6:229:-9.83093,0,-100.463 0/1:47:34,13:34:1381:13:515:-32.5447,0,-110.391 dDocent_Contig_3732 17 . A G 459.524 . AB=0.154255;ABP=198.212;AC=2;AF=0.333333;AN=6;AO=47;CIGAR=1X;DP=419;DPB=419;DPRA=0;EPP=105.07;EPPR=810.798;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=58.6183;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=1895;QR=14886;RO=372;RPL=0;RPP=105.07;RPPR=810.798;RPR=47;RUN=1;SAF=47;SAP=105.07;SAR=0;SRF=372;SRP=810.798;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:231:213,18:213:8552:18:724:0,-4.05466,-691.933 0/1:75:59,16:59:2347:16:650:-36.2561,0,-185.315 0/1:113:100,13:100:3987:13:521:-13.2192,0,-321.378 dDocent_Contig_3733 50 . C A 98.6204 . AB=0.0964912;ABP=325.455;AC=1;AF=0.166667;AN=6;AO=35;CIGAR=1X2M1X;DP=460;DPB=460;DPRA=0;EPP=79.0118;EPPR=809.934;GTI=0;LEN=1;MEANALT=1.66667;MQM=60;MQMR=34.6872;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=1377;QR=16671;RO=422;RPL=35;RPP=79.0118;RPPR=809.934;RPR=0;RUN=1;SAF=35;SAP=79.0118;SAR=0;SRF=422;SRP=919.372;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|1:228:203,22:203:8020:22:879:-11.3849,0,-451.05 0|0:106:101,5:101:3986:5:196:0,-13.8956,-263.247 0|0:126:118,8:118:4665:8:302:0,-10.3965,-261.904 dDocent_Contig_3735 9 . T G 5587.06 . AB=0.0123967;ABP=502.772;AC=3;AF=0.5;AN=6;AO=3;CIGAR=1X4M;DP=323;DPB=323;DPRA=0;EPP=9.52472;EPPR=285.302;GTI=0;LEN=1;MEANALT=2;MQM=60;MQMR=60;NS=3;NUMALT=2;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=116;QR=5073;RO=130;RPL=0;RPP=9.52472;RPPR=285.302;RPR=3;RUN=1;SAF=3;SAP=9.52472;SAR=0;SRF=130;SRP=285.302;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|1:213:82,130,1:82:3213:130,1:5043,39:-389.639,0,-225.071,-411.118,-261,-675.022 0|1:29:8,19,2:8:311:19,2:748,77:-59.1346,0,-19.8401,-55.2213,-19.2381,-80.1745 0|1:81:40,40,0:40:1549:40,0:1552,0:-115.455,0,-115.185,-127.496,-127.227,-254.734 dDocent_Contig_3736 60 . G A 9919.07 . AB=0.863192;ABP=354.753;AC=4;AF=0.666667;AN=6;AO=316;CIGAR=1X7M;DP=358;DPB=358;DPRA=0;EPP=689.196;EPPR=74.6689;GTI=0;LEN=1;MEANALT=1.66667;MQM=60;MQMR=60;NS=3;NUMALT=2;ODDS=2.77556e-17;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=12064;QR=1244;RO=33;RPL=316;RPP=689.196;RPPR=74.6689;RPR=0;RUN=1;SAF=316;SAP=689.196;SAR=0;SRF=33;SRP=74.6689;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|1:210:24,3,183:24:906:3,183:120,7066:-573.012,-570.352,-643.7,0,-64.3455,-19.1445 1|1:51:0,0,51:0:0:0,51:0,1919:-172.926,-172.926,-172.926,-15.3525,-15.3525,0 0|1:97:9,6,82:9:338:6,82:228,3079:-249.478,-233.489,-259.372,0,-8.98673,-3.00205 dDocent_Contig_3737 22 . T G 2590.53 . AB=0.475676;ABP=3.96105;AC=3;AF=0.5;AN=6;AO=88;CIGAR=1X8M;DP=185;DPB=185;DPRA=0;EPP=194.1;EPPR=194.1;GTI=0;LEN=1;MEANALT=2;MQM=60;MQMR=60;NS=3;NUMALT=2;ODDS=0;PAIRED=0.806818;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=3528;QR=3465;RO=88;RPL=0;RPP=194.1;RPPR=194.1;RPR=88;RUN=1;SAF=88;SAP=194.1;SAR=0;SRF=88;SRP=194.1;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|1:100:55,0,45:55:2168:0,45:0,1811:-133.095,-149.651,-328.018,0,-178.765,-165.219 0|1:48:21,0,25:21:824:0,25:0,988:-74.9664,-81.288,-149.053,0,-67.7554,-60.2296 0|1:37:12,7,18:12:473:7,18:268,729:-56.5153,-38.1408,-74.9438,0,-16.9327,-33.503 dDocent_Contig_3738 106 . N G 142.823 . AB=0;ABP=0;AC=2;AF=1;AN=2;AO=5;CIGAR=2X3M1X3M1X;DP=5;DPB=5;DPRA=0;EPP=13.8677;EPPR=0;GTI=0;LEN=1;MEANALT=1;MQM=47.6;MQMR=0;NS=1;NUMALT=1;ODDS=8.07091;PAIRED=0.6;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=165;QR=0;RO=0;RPL=0;RPP=13.8677;RPPR=0;RPR=5;RUN=1;SAF=0;SAP=13.8677;SAR=5;SRF=0;SRP=0;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 1|1:5:0,5:0:0:5:165:-14.2822,-1.50515,0 .:.:.:.:.:.:.:. .:.:.:.:.:.:.:. dDocent_Contig_3739 69 . T C 12692.2 . AB=0;ABP=0;AC=0;AF=0;AN=6;AO=15;CIGAR=1X3M1X;DP=409;DPB=409;DPRA=0;EPP=35.5824;EPPR=31.2394;GTI=0;LEN=1;MEANALT=3;MQM=60;MQMR=60;NS=3;NUMALT=2;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=592;QR=503;RO=13;RPL=15;RPP=35.5824;RPPR=31.2394;RPR=0;RUN=1;SAF=15;SAP=35.5824;SAR=0;SRF=13;SRP=31.2394;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|0:251:6,8,235:6:230:8,235:317,9075:-795.334,-771.047,-787.515,-51.8702,-44.6435,0 0|0:59:0,2,57:0:0:2,57:79,2202:-197.996,-191.495,-190.893,-17.1587,-10.2631,0 0|0:99:7,5,86:7:273:5,86:196,3336:-275.409,-261.397,-282.333,-3.44776,-9.76875,0 dDocent_Contig_3741 176 . G A 1364.76 . AB=0.33758;ABP=38.9848;AC=3;AF=0.5;AN=6;AO=53;CIGAR=1X;DP=157;DPB=157;DPRA=0;EPP=118.098;EPPR=228.843;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=2092;QR=4122;RO=104;RPL=53;RPP=118.098;RPPR=228.843;RPR=0;RUN=1;SAF=0;SAP=118.098;SAR=53;SRF=0;SRP=228.843;SRR=104;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:87:70,17:70:2772:17:652:-32.8146,0,-223.405 0/1:41:13,28:13:523:28:1116:-88.3844,0,-35.0724 0/1:29:21,8:21:827:8:324:-20.7995,0,-66.0107 dDocent_Contig_3742 26 . T C 96.6041 . AB=0.206897;ABP=24.6501;AC=2;AF=0.333333;AN=6;AO=6;CIGAR=1X;DP=88;DPB=88;DPRA=0.245763;EPP=16.0391;EPPR=181.071;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=235;QR=3167;RO=82;RPL=0;RPP=16.0391;RPPR=181.071;RPR=6;RUN=1;SAF=6;SAP=16.0391;SAR=0;SRF=82;SRP=181.071;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:59:59,0:59:2271:0:0:0,-17.7608,-204.584 0/1:9:6,3:6:236:3:119:-8.38612,0,-18.9035 0/1:20:17,3:17:660:3:116:-4.79694,0,-53.7146 dDocent_Contig_3743 10 . G A 2100.89 . AB=0.0776942;ABP=621.085;AC=0;AF=0;AN=6;AO=31;CIGAR=1X1M1X6M;DP=399;DPB=436.778;DPRA=0;EPP=70.3259;EPPR=152.842;GTI=0;LEN=1;MEANALT=12.3333;MQM=60;MQMR=60;NS=3;NUMALT=9;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=1248;QR=2657;RO=69;RPL=0;RPP=70.3259;RPPR=152.842;RPR=31;RUN=1;SAF=31;SAP=70.3259;SAR=0;SRF=69;SRP=152.842;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|0:185:40,10,15,5,3,10,21,21,18,32:40:1539:10,15,5,3,10,21,21,18,32:386,606,194,118,379,819,814,698,1268:-92.3244,-72.6657,-196.006,-54.4042,-149.055,-176.24,-88.4257,-183.076,-164.815,-213.271,-94.6586,-189.309,-171.048,-205.069,-220.106,-73.2931,-167.943,-149.682,-183.704,-189.936,-196.633,-37.0436,-131.694,-113.433,-147.454,-153.687,-132.321,-157.072,-37.4924,-132.143,-113.881,-147.903,-154.136,-132.77,-96.5206,-157.521,-47.0179,-141.668,-123.407,-157.428,-163.661,-142.296,-106.046,-106.495,-167.95,0,-94.6508,-76.3893,-110.411,-116.644,-95.2781,-59.0285,-59.4772,-69.0028,-116.718 0|0:87:14,4,6,4,7,3,13,14,9,10:14:542:4,6,4,7,3,13,14,9,10:154,241,155,269,119,505,544,351,394:-40.4879,-32.0581,-75.3767,-24.8424,-56.7211,-67.5592,-31.9683,-63.8469,-56.6313,-75.287,-22.6213,-54.4997,-47.2841,-54.4099,-65.0367,-34.906,-66.7846,-59.569,-66.6948,-57.3476,-78.5257,-3.20758,-35.086,-27.8703,-34.9962,-25.6491,-37.9339,-43.8168,0,-31.8784,-24.6627,-31.7886,-22.4416,-34.7263,-3.02783,-40.3082,-15.8497,-47.7282,-40.5125,-47.6384,-38.2913,-50.5761,-18.8775,-15.6699,-57.6631,-12.2924,-44.171,-36.9553,-44.0812,-34.7341,-47.0189,-15.3203,-12.1127,-27.9625,-53.8049 0|0:127:15,6,10,8,7,4,17,12,27,11:15:576:6,10,8,7,4,17,12,27,11:218,401,312,272,157,658,460,986,429:-82.7993,-69.5148,-114.992,-54.2741,-83.7578,-98.5476,-61.6681,-91.1516,-75.9111,-106.543,-64.9641,-94.4476,-79.2072,-86.6011,-110.14,-74.4016,-103.885,-88.6447,-96.0386,-99.3346,-120.481,-33.2651,-62.7488,-47.5081,-54.9021,-58.1981,-67.6356,-75.4313,-49.5595,-79.043,-63.8025,-71.1964,-74.4924,-83.9299,-42.7935,-93.2307,-6.76601,-36.2492,-21.0084,-28.4024,-31.6984,-41.1358,0,-16.2941,-45.9209,-52.0561,-81.5396,-66.2991,-73.693,-76.989,-86.4265,-45.29,-61.5844,-18.7905,-96.0283 dDocent_Contig_3744 16 . G T 166.262 . AB=0.192308;ABP=45.7716;AC=3;AF=0.5;AN=6;AO=10;CIGAR=1X;DP=52;DPB=52;DPRA=0;EPP=24.725;EPPR=94.2121;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=407;QR=1694;RO=42;RPL=0;RPP=24.725;RPPR=94.2121;RPR=10;RUN=1;SAF=10;SAP=24.725;SAR=0;SRF=42;SRP=94.2121;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:24:19,5:19:765:5:205:-11.6103,0,-61.9452 0/1:18:15,3:15:608:3:120:-5.76915,0,-49.6389 0/1:10:8,2:8:321:2:82:-4.76938,0,-26.2465 dDocent_Contig_3745 98 . N A 135.969 . AB=0;ABP=0;AC=4;AF=1;AN=4;AO=4;CIGAR=1X;DP=4;DPB=4;DPRA=0;EPP=11.6962;EPPR=0;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=0;NS=2;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=140;QR=0;RO=0;RPL=4;RPP=11.6962;RPPR=0;RPR=0;RUN=1;SAF=4;SAP=11.6962;SAR=0;SRF=0;SRP=0;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 1/1:2:0,2:0:0:2:70:-6.6474,-0.60206,0 1/1:2:0,2:0:0:2:70:-6.6474,-0.60206,0 ./.:.:.:.:.:.:.:. dDocent_Contig_3746 151 . T A 34.0293 . AB=0.142857;ABP=49.5419;AC=2;AF=0.333333;AN=6;AO=6;CIGAR=1X;DP=57;DPB=57;DPRA=1.4;EPP=16.0391;EPPR=113.755;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=209;QR=2005;RO=51;RPL=0;RPP=16.0391;RPPR=113.755;RPR=6;RUN=1;SAF=0;SAP=16.0391;SAR=6;SRF=0;SRP=113.755;SRR=51;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:25:21,4:21:837:4:130:-4.48895,0,-68.1142 0/0:15:15,0:15:586:0:0:0,-4.51545,-53.0721 0/1:17:15,2:15:582:2:79:-2.37973,0,-47.5945 dDocent_Contig_3747 42 . G C 112.984 . AB=0.150943;ABP=59.0998;AC=1;AF=0.166667;AN=6;AO=9;CIGAR=1X;DP=171;DPB=171;DPRA=2.01471;EPP=22.5536;EPPR=354.789;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=3.46945e-18;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=359;QR=6465;RO=162;RPL=0;RPP=22.5536;RPPR=354.789;RPR=9;RUN=1;SAF=9;SAP=22.5536;SAR=0;SRF=162;SRP=354.789;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:84:83,1:83:3305:1:40:0,-21.2908,-293.505 0/0:34:34,0:34:1370:0:0:0,-10.235,-123.556 0/1:53:45,8:45:1790:8:319:-13.1223,0,-145.358 dDocent_Contig_3748 15 . A G 743.241 . AB=0.380282;ABP=11.8491;AC=1;AF=0.166667;AN=6;AO=28;CIGAR=1X;DP=106;DPB=106;DPRA=3.03333;EPP=63.8115;EPPR=172.385;GTI=0;LEN=1;MEANALT=1;MQM=59.9643;MQMR=55.0385;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=0.653846;PAO=0;PQA=0;PQR=0;PRO=0;QA=1116;QR=3069;RO=78;RPL=0;RPP=63.8115;RPPR=172.385;RPR=28;RUN=1;SAF=28;SAP=63.8115;SAR=0;SRF=78;SRP=172.385;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:71:44,27:44:1728:27:1077:-75.847,0,-131.93 0/0:15:15,0:15:590:0:0:0,-4.51545,-52.8382 0/0:20:19,1:19:751:1:39:0,-2.12404,-58.1989 dDocent_Contig_3749 18 . C A 2565.48 . AB=0.40625;ABP=20.1106;AC=3;AF=0.5;AN=6;AO=91;CIGAR=1X2M;DP=224;DPB=224;DPRA=0;EPP=200.614;EPPR=261.416;GTI=0;LEN=1;MEANALT=2;MQM=60;MQMR=60;NS=3;NUMALT=2;ODDS=0;PAIRED=1;PAIREDR=0.941176;PAO=0;PQA=0;PQR=0;PRO=0;QA=3618;QR=4747;RO=119;RPL=0;RPP=200.614;RPPR=261.416;RPR=91;RUN=1;SAF=91;SAP=200.614;SAR=0;SRF=119;SRP=261.416;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|1:141:89,10,42:89:3545:10,42:389,1660:-109.794,-104.623,-393.51,0,-259.94,-279.26 0|1:35:6,2,27:6:238:2,27:80,1075:-86.7044,-81.9202,-100.909,0,-12.9979,-11.4611 0|1:48:24,2,22:24:964:2,22:71,883:-65.5721,-67.0171,-145.852,0,-73.6995,-72.8568 dDocent_Contig_3751 27 . A G 135.25 . AB=0.16129;ABP=64.7922;AC=3;AF=0.5;AN=6;AO=10;CIGAR=1X;DP=62;DPB=62;DPRA=0;EPP=24.725;EPPR=115.927;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=3.46945e-18;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=391;QR=2078;RO=52;RPL=0;RPP=24.725;RPPR=115.927;RPR=10;RUN=1;SAF=10;SAP=24.725;SAR=0;SRF=52;SRP=115.927;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:36:30,6:30:1198:6:241:-11.2296,0,-97.2608 0/1:16:13,3:13:517:3:114:-5.81274,0,-42.0581 0/1:10:9,1:9:363:1:36:-0.587975,0,-30.024 dDocent_Contig_3752 19 . C T 3434.52 . AB=0.0526316;ABP=69.0688;AC=0;AF=0;AN=6;AO=2;CIGAR=1X3M1X3M2X1M;DP=151;DPB=150.909;DPRA=0;EPP=7.35324;EPPR=55.1256;GTI=0;LEN=1;MEANALT=3;MQM=15;MQMR=60;NS=3;NUMALT=4;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=30;QR=941;RO=24;RPL=0;RPP=7.35324;RPPR=55.1256;RPR=2;RUN=1;SAF=2;SAP=7.35324;SAR=0;SRF=24;SRP=55.1256;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|0:54:4,0,0,5,43:4:160:0,0,5,43:0,0,203,1630:-133.006,-134.21,-147.393,-134.21,-147.393,-147.393,-117.464,-130.647,-130.647,-129.142,-3.56988,-16.7564,-16.7564,0,-3.81215 0|0:59:9,0,0,3,46:9:352:0,0,3,46:0,0,121,1798:-144.062,-146.771,-175.712,-146.771,-175.712,-175.712,-136.795,-165.737,-165.737,-164.834,0,-28.9788,-28.9788,-18.9958,-15.1314 0|0:38:11,2,2,0,23:11:429:2,2,0,23:30,80,0,914:-71.9047,-73.6661,-108.328,-74.2197,-107.93,-108.881,-75.2161,-108.93,-109.483,-110.485,0,-33.928,-34.4839,-35.4668,-28.5431 dDocent_Contig_3753 160 . T A 58.4719 . AB=0.210526;ABP=16.8392;AC=2;AF=0.333333;AN=6;AO=4;CIGAR=1X;DP=29;DPB=29;DPRA=0.95;EPP=11.6962;EPPR=57.2971;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=1.73472e-18;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=159;QR=1006;RO=25;RPL=4;RPP=11.6962;RPPR=57.2971;RPR=0;RUN=1;SAF=0;SAP=11.6962;SAR=4;SRF=0;SRP=57.2971;SRR=25;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:9:7,2:7:282:2:78:-4.69403,0,-23.0433 0/0:10:10,0:10:405:0:0:0,-3.0103,-36.8106 0/1:10:8,2:8:319:2:81:-4.67543,0,-26.0663 dDocent_Contig_3754 53 . A C 231.537 . AB=0.102804;ABP=149.635;AC=1;AF=0.166667;AN=6;AO=11;CIGAR=2X12M;DP=142;DPB=143.357;DPRA=0;EPP=26.8965;EPPR=233.186;GTI=0;LEN=1;MEANALT=2.5;MQM=60;MQMR=60;NS=3;NUMALT=2;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=400;QR=3628;RO=106;RPL=11;RPP=26.8965;RPPR=233.186;RPR=0;RUN=1;SAF=11;SAP=26.8965;SAR=0;SRF=106;SRP=233.186;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|0:86:62,13,9:62:2121:13,9:430,326:-16.0919,0,-168.23,-8.13029,-145.525,-177.587 0|1:21:18,1,2:18:620:1,2:41,74:-0.609044,-2.63028,-52.6679,0,-46.9123,-49.6978 0|0:35:26,7,0:26:887:7,0:227,0:-10.5788,0,-69.99,-18.4056,-72.0972,-90.4124 dDocent_Contig_3755 87 . T C 3994.59 . AB=0.863014;ABP=170.124;AC=4;AF=0.666667;AN=6;AO=144;CIGAR=1X;DP=165;DPB=165;DPRA=0;EPP=315.702;EPPR=48.6112;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=6.93889e-18;PAIRED=0.993056;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=4995;QR=728;RO=21;RPL=144;RPP=315.702;RPPR=48.6112;RPR=0;RUN=1;SAF=144;SAP=315.702;SAR=0;SRF=21;SRP=48.6112;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:95:10,85:10:349:85:2961:-238.139,0,-3.14893 1/1:19:1,18:1:35:18:624:-52.987,-2.22094,0 0/1:51:10,41:10:344:41:1410:-111.845,0,-15.9404 dDocent_Contig_3756 209 . N G 110.95 . AB=0;ABP=0;AC=2;AF=1;AN=2;AO=3;CIGAR=1X;DP=3;DPB=3;DPRA=0;EPP=9.52472;EPPR=0;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=0;NS=1;NUMALT=1;ODDS=6.68461;PAIRED=1;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=119;QR=0;RO=0;RPL=3;RPP=9.52472;RPPR=0;RPR=0;RUN=1;SAF=0;SAP=9.52472;SAR=3;SRF=0;SRP=0;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 1/1:3:0,3:0:0:3:119:-11.0945,-0.90309,0 ./.:.:.:.:.:.:.:. ./.:.:.:.:.:.:.:. dDocent_Contig_3757 83 . G T 786.692 . AB=0.174927;ABP=317.836;AC=3;AF=0.5;AN=6;AO=60;CIGAR=1X;DP=343;DPB=343;DPRA=0;EPP=133.299;EPPR=617.537;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=2072;QR=9574;RO=283;RPL=60;RPP=133.299;RPPR=617.537;RPR=0;RUN=1;SAF=60;SAP=133.299;SAR=0;SRF=283;SRP=617.537;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:218:186,32:186:6299:32:1105:-34.1342,0,-501.429 0/1:41:30,11:30:993:11:374:-21.6461,0,-77.3301 0/1:84:67,17:67:2282:17:593:-28.4117,0,-180.36 dDocent_Contig_3758 29 . T A 138.664 . AB=0.195122;ABP=36.112;AC=2;AF=0.333333;AN=6;AO=8;CIGAR=1X;DP=64;DPB=64;DPRA=0.891304;EPP=20.3821;EPPR=124.613;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=321;QR=2240;RO=56;RPL=0;RPP=20.3821;RPPR=124.613;RPR=8;RUN=1;SAF=8;SAP=20.3821;SAR=0;SRF=56;SRP=124.613;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:23:23,0:23:911:0:0:0,-6.92369,-82.2966 0/1:19:17,2:17:687:2:78:-1.68373,0,-56.4402 0/1:22:16,6:16:642:6:243:-15.6255,0,-51.4926 dDocent_Contig_3759 130 . A G 49.8364 . AB=0.333333;ABP=5.18177;AC=1;AF=0.166667;AN=6;AO=3;CIGAR=1X;DP=26;DPB=26;DPRA=1.05882;EPP=9.52472;EPPR=52.9542;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=102;QR=796;RO=23;RPL=0;RPP=9.52472;RPPR=52.9542;RPR=3;RUN=1;SAF=0;SAP=9.52472;SAR=3;SRF=0;SRP=52.9542;SRR=23;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:7:7,0:7:244:0:0:0,-2.10721,-22.3001 0/0:10:10,0:10:346:0:0:0,-3.0103,-31.4746 0/1:9:6,3:6:206:3:102:-6.80753,0,-16.1673 dDocent_Contig_3761 12 . C G 286.587 . AB=0.3;ABP=16.9077;AC=2;AF=0.333333;AN=6;AO=12;CIGAR=1X;DP=57;DPB=57;DPRA=1.17647;EPP=29.068;EPPR=100.727;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=3.46945e-18;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=483;QR=1801;RO=45;RPL=0;RPP=29.068;RPPR=100.727;RPR=12;RUN=1;SAF=12;SAP=29.068;SAR=0;SRF=45;SRP=100.727;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:21:15,6:15:607:6:242:-15.8353,0,-48.6468 0/1:19:13,6:13:516:6:241:-16.3462,0,-41.0663 0/0:17:17,0:17:678:0:0:0,-5.11751,-61.3476 dDocent_Contig_3762 9 . T A 215.506 . AB=0;ABP=0;AC=0;AF=0;AN=6;AO=9;CIGAR=4X;DP=239;DPB=239;DPRA=0;EPP=22.5536;EPPR=419.933;GTI=0;LEN=1;MEANALT=5;MQM=23.1111;MQMR=52;NS=3;NUMALT=2;ODDS=0;PAIRED=0;PAIREDR=0.744792;PAO=0;PQA=0;PQR=0;PRO=0;QA=356;QR=7520;RO=192;RPL=0;RPP=22.5536;RPPR=419.933;RPR=9;RUN=1;SAF=9;SAP=22.5536;SAR=0;SRF=192;SRP=419.933;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|0:114:88,7,9:88:3458:7,9:279,330:0,-13.9091,-269.03,-0.014405,-244.714,-254.587 0|0:50:36,0,11:36:1394:0,11:0,420:-23.3731,-34.2102,-147.987,0,-113.808,-110.496 0|0:75:68,2,3:68:2668:2,3:77,123:0,-17.1528,-215.687,-10.2171,-206.134,-208.567 dDocent_Contig_3763 47 . T G 12000.8 . AB=0.875587;ABP=524.979;AC=3;AF=0.5;AN=6;AO=373;CIGAR=1X;DP=426;DPB=426;DPRA=0;EPP=13.7745;EPPR=118.098;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=14823;QR=2146;RO=53;RPL=208;RPP=13.7745;RPPR=118.098;RPR=165;RUN=1;SAF=373;SAP=812.97;SAR=0;SRF=53;SRP=118.098;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:189:16,173:16:653:173:6835:-557.966,0,-2.2077 0/1:97:15,82:15:598:82:3269:-265.078,0,-24.9582 0/1:140:22,118:22:895:118:4719:-382.479,0,-38.7113 dDocent_Contig_3764 9 . T C 2432.46 . AB=0.386555;ABP=29.6154;AC=3;AF=0.5;AN=6;AO=92;CIGAR=1X3M;DP=238;DPB=238;DPRA=0;EPP=202.786;EPPR=309.188;GTI=0;LEN=1;MEANALT=1.33333;MQM=60;MQMR=60;NS=3;NUMALT=2;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=3538;QR=5467;RO=141;RPL=0;RPP=202.786;RPPR=309.188;RPR=92;RUN=1;SAF=92;SAP=202.786;SAR=0;SRF=141;SRP=309.188;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|1:120:67,0,53:67:2603:0,53:0,2040:-147.71,-167.879,-381.763,0,-214.27,-198.316 0|1:43:28,0,15:28:1071:0,15:0,566:-38.3318,-46.7606,-134.64,0,-88.2587,-83.7432 0|1:75:46,5,24:46:1793:5,24:199,932:-62.7271,-60.1866,-206.051,0,-130.975,-140.137 dDocent_Contig_3766 37 . A C 5135.41 . AB=0.673387;ABP=67.7692;AC=3;AF=0.5;AN=6;AO=167;CIGAR=2X2M1X;DP=248;DPB=248;DPRA=0;EPP=365.646;EPPR=150.67;GTI=0;LEN=1;MEANALT=2.66667;MQM=60;MQMR=60;NS=3;NUMALT=2;ODDS=0;PAIRED=0.922156;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=6560;QR=2684;RO=68;RPL=0;RPP=365.646;RPPR=150.67;RPR=167;RUN=1;SAF=167;SAP=365.646;SAR=0;SRF=68;SRP=150.67;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|1:119:44,67,7:44:1733:67,7:2632,275:-203.22,0,-122.396,-193.847,-119.947,-334.305 0|1:77:7,66,1:7:279:66,1:2620,41:-213.583,0,-3.1136,-212.306,-19.5961,-234.981 0|1:52:17,34,1:17:672:34,1:1308,39:-102.25,0,-45.0712,-104.162,-52.1006,-159.165 dDocent_Contig_3767 37 . T A 44.3112 . AB=0.166667;ABP=20.3821;AC=1;AF=0.166667;AN=6;AO=3;CIGAR=1X;DP=33;DPB=33;DPRA=2.4;EPP=9.52472;EPPR=68.1545;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=122;QR=1201;RO=30;RPL=0;RPP=9.52472;RPPR=68.1545;RPR=3;RUN=1;SAF=3;SAP=9.52472;SAR=0;SRF=30;SRP=68.1545;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:18:15,3:15:603:3:122:-5.95395,0,-49.1887 0/0:6:6,0:6:242:0:0:0,-1.80618,-22.1575 0/0:9:9,0:9:356:0:0:0,-2.70927,-32.4005 dDocent_Contig_3768 132 . G A 800.664 . AB=0.0703125;ABP=208.282;AC=0;AF=0;AN=6;AO=9;CIGAR=1X2M1X1M;DP=155;DPB=155;DPRA=0;EPP=22.5536;EPPR=204.957;GTI=0;LEN=1;MEANALT=4;MQM=48.7778;MQMR=60;NS=3;NUMALT=4;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=290;QR=3198;RO=93;RPL=0;RPP=22.5536;RPPR=204.957;RPR=9;RUN=1;SAF=0;SAP=22.5536;SAR=9;SRF=0;SRP=204.957;SRR=93;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|0:80:52,3,0,4,19:52:1773:3,0,4,19:99,0,144,635:-34.3293,-42.0096,-184.971,-49.9828,-185.874,-193.846,-38.2271,-174.123,-182.095,-180.891,0,-135.9,-143.873,-132.121,-138.153 0|0:27:15,0,0,0,12:15:518:0,0,0,12:0,0,0,370:-24.172,-28.6874,-70.7995,-28.6874,-70.7995,-70.7995,-28.6874,-70.7995,-70.7995,-70.7995,0,-42.4301,-42.4301,-42.4301,-38.8177 0|0:48:26,6,3,0,13:26:907:6,3,0,13:191,105,0,440:-27.088,-19.6072,-91.5796,-26.4107,-84.8843,-99.2902,-34.9148,-93.3858,-100.193,-108.695,0,-58.4788,-65.2843,-73.7859,-69.8725 dDocent_Contig_3770 15 . C T 58.787 . AB=0.173913;ABP=24.253;AC=1;AF=0.166667;AN=6;AO=4;CIGAR=1X;DP=49;DPB=49;DPRA=1.76923;EPP=11.6962;EPPR=100.727;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=0;PAIREDR=0.755556;PAO=0;PQA=0;PQR=0;PRO=0;QA=155;QR=1726;RO=45;RPL=0;RPP=11.6962;RPPR=100.727;RPR=4;RUN=1;SAF=4;SAP=11.6962;SAR=0;SRF=45;SRP=100.727;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:23:19,4:19:720:4:155:-7.40158,0,-58.1809 0/0:13:13,0:13:484:0:0:0,-3.91339,-43.889 0/0:13:13,0:13:522:0:0:0,-3.91339,-47.3278 dDocent_Contig_3771 20 . T C 943.427 . AB=0.22449;ABP=132.235;AC=3;AF=0.5;AN=6;AO=44;CIGAR=1X;DP=196;DPB=196;DPRA=0;EPP=98.5551;EPPR=333.074;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=0;PAIREDR=0.934211;PAO=0;PQA=0;PQR=0;PRO=0;QA=1754;QR=6064;RO=152;RPL=0;RPP=98.5551;RPPR=333.074;RPR=44;RUN=1;SAF=44;SAP=98.5551;SAR=0;SRF=152;SRP=333.074;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:105:81,24:81:3246:24:959:-54.9971,0,-260.595 0/1:40:31,9:31:1225:9:362:-20.9032,0,-98.4844 0/1:51:40,11:40:1593:11:433:-23.9654,0,-128.252 dDocent_Contig_3772 22 . G A 7716.94 . AB=0.748428;ABP=173.478;AC=3;AF=0.5;AN=6;AO=238;CIGAR=2X;DP=318;DPB=318;DPRA=0;EPP=519.821;EPPR=85.5263;GTI=0;LEN=1;MEANALT=2;MQM=60;MQMR=60;NS=3;NUMALT=2;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=9407;QR=1502;RO=38;RPL=0;RPP=519.821;RPPR=85.5263;RPR=238;RUN=1;SAF=238;SAP=519.821;SAR=0;SRF=38;SRP=85.5263;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 1|0:168:25,118,25:25:982:118,25:4654,1002:-377.142,-1.79713,-47.0341,-302.115,0,-375.351 1|0:50:3,41,6:3:120:41,6:1603,234:-140.208,-9.33763,-6.88376,-121.879,0,-129.958 1|0:100:10,79,11:10:400:79,11:3150,442:-259.864,-3.47562,-12.6423,-226.451,0,-256.089 dDocent_Contig_3773 7 . A G 54.8551 . AB=0.16129;ABP=33.9012;AC=1;AF=0.166667;AN=6;AO=11;CIGAR=1X;DP=119;DPB=119;DPRA=0;EPP=26.8965;EPPR=237.529;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=58.9074;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=0.944444;PAO=0;PQA=0;PQR=0;PRO=0;QA=371;QR=4063;RO=108;RPL=0;RPP=26.8965;RPPR=237.529;RPR=11;RUN=1;SAF=11;SAP=26.8965;SAR=0;SRF=108;SRP=237.529;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:50:45,5:45:1692:5:155:0,-0.79918,-137.801 0/1:31:26,5:26:974:5:181:-7.30919,0,-77.7225 0/0:38:37,1:37:1397:1:35:0,-7.94051,-122.513 dDocent_Contig_3774 42 . T A 145.344 . AB=0.233333;ABP=21.5402;AC=1;AF=0.166667;AN=6;AO=10;CIGAR=1X;DP=126;DPB=126;DPRA=0;EPP=24.725;EPPR=254.901;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=397;QR=4626;RO=116;RPL=0;RPP=24.725;RPPR=254.901;RPR=10;RUN=1;SAF=10;SAP=24.725;SAR=0;SRF=116;SRP=254.901;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:42:41,1:41:1642:1:38:0,-8.84599,-144.205 0/0:54:52,2:52:2067:2:81:0,-8.56989,-178.537 0/1:30:23,7:23:917:7:278:-16.3583,0,-73.8016 dDocent_Contig_3775 61 . G A 1993.88 . AB=0.675325;ABP=23.5688;AC=4;AF=0.666667;AN=6;AO=67;CIGAR=1X;DP=93;DPB=93;DPRA=0;EPP=148.499;EPPR=59.4686;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=2545;QR=1028;RO=26;RPL=67;RPP=148.499;RPPR=59.4686;RPR=0;RUN=1;SAF=67;SAP=148.499;SAR=0;SRF=26;SRP=59.4686;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:42:15,27:15:597:27:1029:-80.2655,0,-41.419 0/1:35:10,25:10:392:25:947:-75.0013,0,-25.1018 1/1:16:1,15:1:39:15:569:-47.6437,-0.919916,0 dDocent_Contig_3776 1 . N G 114.653 . AB=0;ABP=0;AC=2;AF=1;AN=2;AO=3;CIGAR=1X;DP=3;DPB=3;DPRA=0;EPP=9.52472;EPPR=0;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=0;NS=1;NUMALT=1;ODDS=6.68461;PAIRED=1;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=123;QR=0;RO=0;RPL=0;RPP=9.52472;RPPR=0;RPR=3;RUN=1;SAF=3;SAP=9.52472;SAR=0;SRF=0;SRP=0;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 1/1:3:0,3:0:0:3:123:-11.4648,-0.90309,0 ./.:.:.:.:.:.:.:. ./.:.:.:.:.:.:.:. dDocent_Contig_3777 14 . G A 3926.9 . AB=0.509579;ABP=3.2183;AC=3;AF=0.5;AN=6;AO=133;CIGAR=1X;DP=261;DPB=261;DPRA=0;EPP=291.816;EPPR=280.959;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=5290;QR=5060;RO=128;RPL=0;RPP=291.816;RPPR=280.959;RPR=133;RUN=1;SAF=133;SAP=291.816;SAR=0;SRF=128;SRP=280.959;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:135:80,55:80:3181:55:2192:-156.825,0,-245.729 0/1:28:11,17:11:436:17:678:-52.9235,0,-31.1664 0/1:98:37,61:37:1443:61:2420:-188.465,0,-100.609 dDocent_Contig_3778 16 . T C 145.928 . AB=0.348684;ABP=33.2395;AC=1;AF=0.166667;AN=6;AO=106;CIGAR=1X;DP=365;DPB=365;DPRA=0;EPP=233.186;EPPR=563.25;GTI=0;LEN=1;MEANALT=1.33333;MQM=13;MQMR=13.1047;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=4225;QR=10356;RO=258;RPL=0;RPP=233.186;RPPR=563.25;RPR=106;RUN=1;SAF=106;SAP=233.186;SAR=0;SRF=258;SRP=563.25;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:101:76,25:76:3082:25:992:0,-1.04844,-59.6435 0/1:152:98,53:98:3896:53:2123:-16.4165,0,-68.9428 0/0:112:84,28:84:3378:28:1110:0,-0.947577,-67.7717 dDocent_Contig_3779 45 . G C 81.9285 . AB=0.285714;ABP=8.59409;AC=1;AF=0.166667;AN=6;AO=4;CIGAR=1X;DP=120;DPB=120;DPRA=0.264151;EPP=11.6962;EPPR=254.901;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=154;QR=4587;RO=116;RPL=0;RPP=11.6962;RPPR=254.901;RPR=4;RUN=1;SAF=4;SAP=11.6962;SAR=0;SRF=116;SRP=254.901;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:88:88,0:88:3466:0:0:0,-26.4906,-311.993 0/0:18:18,0:18:724:0:0:0,-5.41854,-65.486 0/1:14:10,4:10:397:4:154:-10.0168,0,-31.8715 dDocent_Contig_3781 191 . T C 235.236 . AB=0.245614;ABP=35.049;AC=3;AF=0.5;AN=6;AO=14;CIGAR=1X;DP=57;DPB=57;DPRA=0;EPP=33.4109;EPPR=96.3836;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=502;QR=1631;RO=43;RPL=14;RPP=33.4109;RPPR=96.3836;RPR=0;RUN=1;SAF=0;SAP=33.4109;SAR=14;SRF=0;SRP=96.3836;SRR=43;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:36:28,8:28:1087:8:310:-17.426,0,-87.2911 0/1:13:9,4:9:318:4:113:-6.53096,0,-25.0373 0/1:8:6,2:6:226:2:79:-5.08939,0,-18.2932 dDocent_Contig_3782 9 . T A 171.14 . AB=0.0452261;ABP=360.496;AC=0;AF=0;AN=6;AO=9;CIGAR=1X1M1X;DP=199;DPB=201.667;DPRA=0;EPP=22.5536;EPPR=317.932;GTI=0;LEN=1;MEANALT=4.33333;MQM=26.2222;MQMR=55;NS=3;NUMALT=4;ODDS=0;PAIRED=0;PAIREDR=0.107383;PAO=0;PQA=0;PQR=0;PRO=0;QA=346;QR=5843;RO=149;RPL=0;RPP=22.5536;RPPR=326.56;RPR=9;RUN=1;SAF=9;SAP=22.5536;SAR=0;SRF=148;SRP=317.932;SRR=1;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|0:84:63,4,4,9,2:63:2482:4,4,9,2:159,60,360,76:-10.7659,-21.4266,-219.439,-26.6291,-217.512,-224.615,0,-190.984,-196.161,-196.582,-23.4892,-214.409,-219.585,-193.057,-222.114 0|0:65:52,1,4,3,5:52:2029:1,4,3,5:38,114,123,204:-1.21629,-15.2111,-168.679,-8.66396,-160.744,-161.207,-7.03333,-159.157,-152.588,-159.921,0,-152.145,-145.576,-143.989,-152.307 0|0:50:34,4,0,6,4:34:1332:4,0,6,4:149,0,244,158:-9.84776,-13.4804,-121.483,-20.0828,-122.687,-129.313,0,-102.647,-109.272,-107.465,-7.0588,-109.684,-116.309,-96.2671,-115.105 dDocent_Contig_3783 18 . T G 352.649 . AB=0.175439;ABP=107.317;AC=3;AF=0.5;AN=6;AO=20;CIGAR=1X;DP=114;DPB=114;DPRA=0;EPP=46.4397;EPPR=204.957;GTI=0;LEN=1;MEANALT=1.33333;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=0.924731;PAO=0;PQA=0;PQR=0;PRO=0;QA=811;QR=3732;RO=93;RPL=0;RPP=46.4397;RPPR=204.957;RPR=20;RUN=1;SAF=20;SAP=46.4397;SAR=0;SRF=93;SRP=204.957;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:55:43,11:43:1719:11:449:-24.1009,0,-138.256 0/1:21:19,2:19:765:2:76:-0.892627,0,-62.8498 0/1:38:31,7:31:1248:7:286:-14.6757,0,-101.15 dDocent_Contig_3785 7 . G A 15680.9 . AB=0;ABP=0;AC=6;AF=1;AN=6;AO=476;CIGAR=1X;DP=502;DPB=502;DPRA=0;EPP=1036.63;EPPR=57.2971;GTI=0;LEN=1;MEANALT=1.33333;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=18147;QR=719;RO=25;RPL=0;RPP=1036.63;RPPR=57.2971;RPR=476;RUN=1;SAF=476;SAP=1036.63;SAR=0;SRF=25;SRP=57.2971;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 1/1:284:7,277:7:178:277:10541:-932.061,-69.2228,0 1/1:76:2,74:2:74:74:2820:-246.959,-15.8524,0 1/1:142:16,125:16:467:125:4786:-388.472,-0.524537,0 dDocent_Contig_3786 21 . T C 119.009 . AB=0.25;ABP=16.0391;AC=2;AF=0.333333;AN=6;AO=6;CIGAR=1X;DP=34;DPB=34;DPRA=1.2;EPP=16.0391;EPPR=63.8115;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=243;QR=1127;RO=28;RPL=0;RPP=16.0391;RPPR=63.8115;RPR=6;RUN=1;SAF=6;SAP=16.0391;SAR=0;SRF=28;SRP=63.8115;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:11:9,2:9:363:2:79:-4.1863,0,-29.7222 0/1:13:9,4:9:355:4:164:-11.2365,0,-28.3957 0/0:10:10,0:10:409:0:0:0,-3.0103,-37.1706 dDocent_Contig_3787 17 . T A 2146.93 . AB=0.517241;ABP=3.38469;AC=3;AF=0.5;AN=6;AO=75;CIGAR=1X;DP=145;DPB=145;DPRA=0;EPP=165.871;EPPR=155.013;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=2922;QR=2830;RO=70;RPL=0;RPP=165.871;RPPR=155.013;RPR=75;RUN=1;SAF=75;SAP=165.871;SAR=0;SRF=70;SRP=155.013;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:84:33,51:33:1332:51:1989:-153.92,0,-94.852 0/1:25:14,11:14:569:11:420:-30.6176,0,-44.0261 0/1:36:23,13:23:929:13:513:-35.678,0,-73.074 dDocent_Contig_3788 13 . C A 493.795 . AB=0.216216;ABP=80.6551;AC=3;AF=0.5;AN=6;AO=24;CIGAR=1X;DP=111;DPB=111;DPRA=0;EPP=55.1256;EPPR=191.928;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=969;QR=3432;RO=87;RPL=0;RPP=55.1256;RPPR=191.928;RPR=24;RUN=1;SAF=24;SAP=55.1256;SAR=0;SRF=87;SRP=191.928;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:64:57,7:57:2248:7:284:-6.66807,0,-183.226 0/1:19:10,9:10:396:9:364:-27.4052,0,-30.2783 0/1:28:20,8:20:788:8:321:-20.8291,0,-62.808 dDocent_Contig_3789 26 . A G 3024.81 . AB=0.504902;ABP=3.05288;AC=3;AF=0.5;AN=6;AO=103;CIGAR=1X;DP=204;DPB=204;DPRA=0;EPP=226.672;EPPR=222.329;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=0.990291;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=4096;QR=3933;RO=101;RPL=0;RPP=226.672;RPPR=222.329;RPR=103;RUN=1;SAF=103;SAP=226.672;SAR=0;SRF=101;SRP=222.329;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:101:42,59:42:1634:59:2334:-179.819,0,-116.903 0/1:32:24,8:24:913:8:315:-19.0801,0,-72.8451 0/1:71:35,36:35:1386:36:1447:-109.105,0,-103.631 dDocent_Contig_3790 47 . A G 157.271 . AB=0.375;ABP=5.18177;AC=1;AF=0.166667;AN=6;AO=6;CIGAR=1X;DP=36;DPB=36;DPRA=1.6;EPP=16.0391;EPPR=68.1545;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=241;QR=1179;RO=30;RPL=0;RPP=16.0391;RPPR=68.1545;RPR=6;RUN=1;SAF=6;SAP=16.0391;SAR=0;SRF=30;SRP=68.1545;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:16:10,6:10:389:6:241:-17.25,0,-30.5448 0/0:7:7,0:7:276:0:0:0,-2.10721,-25.2079 0/0:13:13,0:13:514:0:0:0,-3.91339,-46.606 dDocent_Contig_3791 107 . N A 299.315 . AB=0;ABP=0;AC=6;AF=1;AN=6;AO=10;CIGAR=1X;DP=10;DPB=10;DPRA=0;EPP=24.725;EPPR=0;GTI=0;LEN=1;MEANALT=1;MQM=52;MQMR=0;NS=3;NUMALT=1;ODDS=0;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=317;QR=0;RO=0;RPL=0;RPP=24.725;RPPR=0;RPR=10;RUN=1;SAF=0;SAP=24.725;SAR=10;SRF=0;SRP=0;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 1/1:6:0,6:0:0:6:184:-16.8414,-1.80618,0 1/1:2:0,2:0:0:2:65:-6.16525,-0.60206,0 1/1:2:0,2:0:0:2:68:-6.44703,-0.60206,0 dDocent_Contig_3792 16 . G A 185.842 . AB=0.258065;ABP=18.771;AC=1;AF=0.166667;AN=6;AO=8;CIGAR=1X;DP=60;DPB=60;DPRA=2.13793;EPP=20.3821;EPPR=115.927;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=1.73472e-18;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=323;QR=2076;RO=52;RPL=0;RPP=20.3821;RPPR=115.927;RPR=8;RUN=1;SAF=8;SAP=20.3821;SAR=0;SRF=52;SRP=115.927;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:31:23,8:23:924:8:323:-20.107,0,-74.132 0/0:7:7,0:7:274:0:0:0,-2.10721,-25.0253 0/0:22:22,0:22:878:0:0:0,-6.62266,-79.329 dDocent_Contig_3793 10 . A G 31.4613 . AB=0.103448;ABP=82.2316;AC=1;AF=0.166667;AN=6;AO=11;CIGAR=1X;DP=179;DPB=179;DPRA=0;EPP=26.8965;EPPR=367.818;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=6.93889e-18;PAIRED=0.272727;PAIREDR=0.880952;PAO=0;PQA=0;PQR=0;PRO=0;QA=434;QR=6633;RO=168;RPL=0;RPP=26.8965;RPPR=367.818;RPR=11;RUN=1;SAF=11;SAP=26.8965;SAR=0;SRF=168;SRP=367.818;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:84:81,3:81:3183:3:123:0,-13.8217,-275.091 0/0:37:35,2:35:1415:2:66:0,-4.8734,-121.336 0/1:58:52,6:52:2035:6:245:-4.96973,0,-165.886 dDocent_Contig_3794 30 . T C 1635.4 . AB=0.574468;ABP=7.53805;AC=3;AF=0.5;AN=6;AO=54;CIGAR=1X;DP=94;DPB=94;DPRA=0;EPP=120.27;EPPR=89.8692;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=2182;QR=1613;RO=40;RPL=0;RPP=120.27;RPPR=89.8692;RPR=54;RUN=1;SAF=54;SAP=120.27;SAR=0;SRF=40;SRP=89.8692;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:61:19,42:19:760:42:1696:-134.5,0,-50.3601 0/1:11:6,5:6:244:5:203:-15.3417,0,-19.0275 0/1:22:15,7:15:609:7:283:-19.2207,0,-48.5249 dDocent_Contig_3795 9 . C T 334.44 . AB=0.173554;ABP=115.012;AC=1;AF=0.166667;AN=6;AO=55;CIGAR=1X;DP=623;DPB=623;DPRA=0;EPP=122.441;EPPR=1234.24;GTI=0;LEN=1;MEANALT=1.33333;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=2088;QR=21676;RO=567;RPL=0;RPP=122.441;RPPR=1234.24;RPR=55;RUN=1;SAF=55;SAP=122.441;SAR=0;SRF=567;SRP=1234.24;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:380:355,25:355:13616:25:958:0,-27.8595,-1138.29 0/1:121:100,21:100:3778:21:793:-35.2679,0,-303.707 0/0:122:112,9:112:4282:9:337:0,-6.13957,-354.769 dDocent_Contig_3796 9 . T A 2333.85 . AB=0.413146;ABP=16.9669;AC=3;AF=0.5;AN=6;AO=88;CIGAR=1X;DP=213;DPB=213;DPRA=0;EPP=194.1;EPPR=274.444;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=3357;QR=4816;RO=125;RPL=0;RPP=194.1;RPPR=274.444;RPR=88;RUN=1;SAF=88;SAP=194.1;SAR=0;SRF=125;SRP=274.444;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:153:81,72:81:3127:72:2752:-201.805,0,-235.523 0/1:16:8,8:8:312:8:304:-22.9022,0,-23.6284 0/1:44:36,8:36:1377:8:301:-14.2007,0,-110.964 dDocent_Contig_3797 89 . T A 51.2806 . AB=0.129032;ABP=77.1206;AC=2;AF=0.333333;AN=6;AO=8;CIGAR=1X;DP=85;DPB=85;DPRA=1.34783;EPP=20.3821;EPPR=170.214;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=279;QR=2482;RO=77;RPL=8;RPP=20.3821;RPPR=170.214;RPR=0;RUN=1;SAF=8;SAP=20.3821;SAR=0;SRF=77;SRP=170.214;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:52:45,7:45:1454:7:244:-6.6465,0,-115.491 0/1:10:9,1:9:308:1:35:-0.488329,0,-25.0425 0/0:23:23,0:23:720:0:0:0,-6.92369,-65.0937 dDocent_Contig_3799 45 . C T 41.024 . AB=0.272727;ABP=7.94546;AC=1;AF=0.166667;AN=6;AO=3;CIGAR=1X;DP=33;DPB=33;DPRA=1;EPP=3.73412;EPPR=68.1545;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=99;QR=1176;RO=30;RPL=1;RPP=3.73412;RPPR=68.1545;RPR=2;RUN=1;SAF=3;SAP=9.52472;SAR=0;SRF=30;SRP=68.1545;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:16:16,0:16:631:0:0:0,-4.81648,-57.1283 0/1:11:8,3:8:310:3:99:-5.92625,0,-24.9505 0/0:6:6,0:6:235:0:0:0,-1.80618,-21.5216 dDocent_Contig_3800 68 . G A 1086.16 . AB=0.47561;ABP=3.434;AC=3;AF=0.5;AN=6;AO=39;CIGAR=1X;DP=82;DPB=82;DPRA=0;EPP=87.6977;EPPR=96.3836;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=1524;QR=1678;RO=43;RPL=39;RPP=87.6977;RPPR=96.3836;RPR=0;RUN=1;SAF=39;SAP=87.6977;SAR=0;SRF=43;SRP=96.3836;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:38:30,8:30:1183:8:322:-17.9092,0,-95.3094 0/1:19:2,17:2:75:17:641:-52.2872,0,-1.40053 0/1:25:11,14:11:420:14:561:-43.3083,0,-30.6215 dDocent_Contig_3801 41 . G A 4840.95 . AB=0.523962;ABP=4.57126;AC=3;AF=0.5;AN=6;AO=164;CIGAR=1X;DP=313;DPB=313;DPRA=0;EPP=359.132;EPPR=326.56;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=6481;QR=5843;RO=149;RPL=0;RPP=359.132;RPPR=326.56;RPR=164;RUN=1;SAF=164;SAP=359.132;SAR=0;SRF=149;SRP=326.56;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:189:97,92:97:3794:92:3641:-270.836,0,-284.598 0/1:34:14,20:14:550:20:779:-60.1891,0,-39.606 0/1:90:38,52:38:1499:52:2061:-158.593,0,-108.064 dDocent_Contig_3802 60 . T C 2506.95 . AB=0.116279;ABP=58.0041;AC=0;AF=0;AN=6;AO=5;CIGAR=5M1X6M;DP=189;DPB=180.417;DPRA=0;EPP=13.8677;EPPR=178.9;GTI=0;LEN=1;MEANALT=2;MQM=60;MQMR=60;NS=3;NUMALT=3;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=199;QR=3177;RO=81;RPL=5;RPP=13.8677;RPPR=178.9;RPR=0;RUN=1;SAF=5;SAP=13.8677;SAR=0;SRF=81;SRP=178.9;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|0:105:39,11,53,0:39:1550:11,53,0:433,2017,0:-153.665,-129.783,-254.096,0,-92.0148,-111.68,-165.405,-257.407,-127.634,-293.027 0|0:43:25,0,13,5:25:971:0,13,5:0,468,199:-30.6211,-38.1469,-117.941,0,-79.7763,-75.8629,-21.751,-101.554,-63.3894,-100.049 0|0:41:17,0,24,0:17:656:0,24,0:0,933,0:-71.9326,-77.0501,-130.916,0,-54.253,-47.0283,-77.0501,-130.916,-54.253,-130.916 dDocent_Contig_3803 154 . G C 1874.64 . AB=0.373418;ABP=24.9999;AC=4;AF=0.666666;AN=6;AO=59;CIGAR=1X1M;DP=158;DPB=158;DPRA=0;EPP=131.127;EPPR=133.299;GTI=0;LEN=1;MEANALT=2;MQM=60;MQMR=60;NS=3;NUMALT=2;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=2271;QR=2373;RO=60;RPL=0;RPP=131.127;RPPR=133.299;RPR=59;RUN=1;SAF=0;SAP=131.127;SAR=59;SRF=0;SRP=133.299;SRR=60;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|1:77:31,24,22:31:1203:24,22:916,849:-65.7936,0,-91.5908,-5.4177,-29.1106,-97.6129 1|1:17:1,7,9:1:41:7,9:275,339:-46.6786,-24.3567,-25.6369,-19.2147,0,-19.8917 0|1:64:28,8,28:28:1129:8,28:308,1083:-80.5151,-63.6631,-154.324,0,-67.798,-84.6463 dDocent_Contig_3804 8 . G A 19178.7 . AB=0.0617048;ABP=2626.02;AC=0;AF=0;AN=6;AO=97;CIGAR=1X3M1X3M;DP=1572;DPB=1572;DPRA=0;EPP=213.643;EPPR=304.845;GTI=0;LEN=1;MEANALT=33.3333;MQM=51.1649;MQMR=58.4029;NS=3;NUMALT=5;ODDS=4.44089e-16;PAIRED=0.948454;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=3550;QR=5289;RO=139;RPL=0;RPP=213.643;RPPR=304.845;RPR=97;RUN=1;SAF=97;SAP=213.643;SAR=0;SRF=139;SRP=304.845;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|0:516:47,45,5,60,202,9:47:1822:45,5,60,202,9:1720,194,2304,7688,364:-604.889,-478.673,-614.652,-603.27,-612.43,-751.289,-471.666,-480.826,-605.422,-603.128,0,-9.16075,-133.759,-2.15961,-88.7191,-594.936,-604.096,-728.693,-597.089,-125.426,-741.752 0|0:603:64,21,19,41,265,31:64:2407:21,19,41,265,31:784,760,1530,9596,1231:-745.989,-701.239,-891.881,-703.936,-836.883,-895.18,-670.598,-803.545,-806.242,-855.219,0,-132.95,-135.646,-102.313,-117.194,-678.769,-811.717,-814.414,-781.076,-110.481,-866.401 0|0:453:28,31,23,48,180,12:28:1060:31,23,48,180,12:1046,900,1886,6737,471:-572.509,-497.701,-575.15,-508.175,-511.719,-588.033,-457.982,-461.526,-472,-530.313,-36.1714,-39.7176,-50.1901,0,-68.7684,-555.275,-558.819,-569.293,-519.1,-97.2922,-638.443 dDocent_Contig_3806 38 . A T 1265.72 . AB=0.424528;ABP=8.25461;AC=3;AF=0.5;AN=6;AO=45;CIGAR=1X;DP=106;DPB=106;DPRA=0;EPP=100.727;EPPR=135.47;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=1811;QR=2400;RO=61;RPL=0;RPP=100.727;RPPR=135.47;RPR=45;RUN=1;SAF=45;SAP=100.727;SAR=0;SRF=61;SRP=135.47;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:60:35,25:35:1367:25:1005:-72.684,0,-105.218 0/1:22:12,10:12:484:10:401:-29.8257,0,-37.2893 0/1:24:14,10:14:549:10:405:-29.5853,0,-42.5244 dDocent_Contig_3807 9 . T C 892.541 . AB=0.211009;ABP=161.149;AC=2;AF=0.333333;AN=6;AO=48;CIGAR=1X;DP=245;DPB=245;DPRA=0;EPP=107.241;EPPR=430.79;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=1831;QR=7525;RO=197;RPL=0;RPP=107.241;RPPR=430.79;RPR=48;RUN=1;SAF=48;SAP=107.241;SAR=0;SRF=197;SRP=430.79;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:159:132,27:132:5079:27:1035:-45.5906,0,-409.254 0/0:27:25,2:25:962:2:78:0,-0.724337,-79.4903 0/1:59:40,19:40:1484:19:718:-47.1861,0,-116.068 dDocent_Contig_3808 25 . T C 2636.65 . AB=0.583893;ABP=12.1188;AC=3;AF=0.5;AN=6;AO=87;CIGAR=1X;DP=149;DPB=149;DPRA=0;EPP=191.928;EPPR=137.642;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=3480;QR=2476;RO=62;RPL=0;RPP=191.928;RPPR=137.642;RPR=87;RUN=1;SAF=87;SAP=191.928;SAR=0;SRF=62;SRP=137.642;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:62:22,40:22:885:40:1606:-126.11,0,-61.2935 0/1:51:21,30:21:826:30:1182:-91.3064,0,-59.3003 0/1:36:19,17:19:765:17:692:-51.7713,0,-58.3348 dDocent_Contig_3809 46 . C A 58.6705 . AB=0.114754;ABP=81.6461;AC=1;AF=0.166667;AN=6;AO=8;CIGAR=1X;DP=108;DPB=108;DPRA=2.07143;EPP=20.3821;EPPR=220.158;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=323;QR=4012;RO=100;RPL=0;RPP=20.3821;RPPR=220.158;RPR=8;RUN=1;SAF=8;SAP=20.3821;SAR=0;SRF=100;SRP=220.158;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:61:54,7:54:2156:7:282:-7.38993,0,-175.851 0/0:21:21,0:21:843:0:0:0,-6.32163,-76.1841 0/0:26:25,1:25:1013:1:41:0,-3.73221,-87.3676 dDocent_Contig_3810 62 . C A 44.311 . AB=0.176471;ABP=18.4661;AC=1;AF=0.166667;AN=6;AO=3;CIGAR=1X;DP=67;DPB=67;DPRA=0.68;EPP=9.52472;EPPR=141.985;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=0.78125;PAO=0;PQA=0;PQR=0;PRO=0;QA=122;QR=2536;RO=64;RPL=3;RPP=9.52472;RPPR=141.985;RPR=0;RUN=1;SAF=3;SAP=9.52472;SAR=0;SRF=64;SRP=141.985;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:42:42,0:42:1659:0:0:0,-12.6433,-149.543 0/0:8:8,0:8:314:0:0:0,-2.40824,-28.622 0/1:17:14,3:14:563:3:122:-6.25498,0,-45.8963 dDocent_Contig_3811 6 . C A 6025.61 . AB=0.713805;ABP=120.935;AC=3;AF=0.5;AN=6;AO=212;CIGAR=1X;DP=297;DPB=297;DPRA=0;EPP=463.362;EPPR=187.585;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=7742;QR=3297;RO=85;RPL=0;RPP=463.362;RPPR=187.585;RPR=212;RUN=1;SAF=212;SAP=463.362;SAR=0;SRF=85;SRP=187.585;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:194:50,144:50:1941:144:5276:-416.541,0,-116.528 0/1:42:15,27:15:584:27:978:-75.6929,0,-40.26 0/1:61:20,41:20:772:41:1488:-115.85,0,-51.4456 dDocent_Contig_3812 68 . C G 57.7726 . AB=0.12766;ABP=59.6072;AC=2;AF=0.333333;AN=6;AO=6;CIGAR=1X;DP=55;DPB=55;DPRA=2.9375;EPP=16.0391;EPPR=109.412;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=235;QR=1859;RO=49;RPL=6;RPP=16.0391;RPPR=109.412;RPR=0;RUN=1;SAF=6;SAP=16.0391;SAR=0;SRF=49;SRP=109.412;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:36:33,3:33:1271:3:118:-0.165427,0,-103.832 0/0:8:8,0:8:281:0:0:0,-2.40824,-25.6174 0/1:11:8,3:8:307:3:117:-7.59905,0,-24.6803 dDocent_Contig_3813 62 . T G 1135.64 . AB=0.630769;ABP=12.665;AC=3;AF=0.5;AN=6;AO=41;CIGAR=1X;DP=65;DPB=65;DPRA=0;EPP=92.0407;EPPR=55.1256;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=1523;QR=900;RO=24;RPL=41;RPP=92.0407;RPPR=55.1256;RPR=0;RUN=1;SAF=41;SAP=92.0407;SAR=0;SRF=24;SRP=55.1256;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:26:12,14:12:464:14:531:-40.3044,0,-34.285 0/1:8:1,7:1:39:7:264:-21.7116,0,-1.48832 0/1:31:11,20:11:397:20:728:-56.5169,0,-26.7397 dDocent_Contig_3814 8 . T C 1347.43 . AB=0.0561224;ABP=338.436;AC=3;AF=0.5;AN=6;AO=11;CIGAR=2X3M1X2M1X2M1X3M;DP=196;DPB=196;DPRA=0;EPP=26.8965;EPPR=224.5;GTI=0;LEN=1;MEANALT=3.66667;MQM=46.7273;MQMR=60;NS=3;NUMALT=3;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=438;QR=3979;RO=102;RPL=0;RPP=26.8965;RPPR=224.5;RPR=11;RUN=1;SAF=11;SAP=26.8965;SAR=0;SRF=102;SRP=224.5;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|1:129:62,36,21,8:62:2416:36,21,8:1392,804,318:-95.6798,0,-187.742,-48.3644,-132.601,-240.618,-88.6723,-172.909,-221.269,-284.839 0|1:21:11,5,4,1:11:433:5,4,1:189,150,40:-12.1808,0,-34.1274,-3.20801,-23.3512,-37.6344,-12.3232,-32.4648,-35.6707,-47.6528 0|1:46:29,2,13,2:29:1130:2,13,2:78,501,80:-32.4052,-34.7229,-126.998,0,-86.4619,-88.9602,-34.6786,-121.144,-86.4177,-126.954 dDocent_Contig_3815 106 . N A 97.0363 . AB=0;ABP=0;AC=2;AF=1;AN=2;AO=3;CIGAR=2X;DP=3;DPB=3;DPRA=0;EPP=9.52472;EPPR=0;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=0;NS=1;NUMALT=1;ODDS=6.68461;PAIRED=1;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=104;QR=0;RO=0;RPL=0;RPP=9.52472;RPPR=0;RPR=3;RUN=1;SAF=0;SAP=9.52472;SAR=3;SRF=0;SRP=0;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 1|1:3:0,3:0:0:3:104:-9.70309,-0.90309,0 .:.:.:.:.:.:.:. .:.:.:.:.:.:.:. dDocent_Contig_3816 44 . G A 13209.6 . AB=0;ABP=0;AC=6;AF=1;AN=6;AO=389;CIGAR=1X;DP=405;DPB=405;DPRA=0;EPP=847.713;EPPR=37.7539;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=0.953728;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=15334;QR=650;RO=16;RPL=0;RPP=847.713;RPPR=37.7539;RPR=389;RUN=1;SAF=389;SAP=847.713;SAR=0;SRF=16;SRP=37.7539;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 1/1:221:8,213:8:323:213:8408:-726.839,-37.0885,0 1/1:79:0,79:0:0:79:3099:-278.999,-23.7814,0 1/1:105:8,97:8:327:97:3827:-314.644,-1.80805,0 dDocent_Contig_3817 156 . G A 64.6108 . AB=0;ABP=0;AC=0;AF=0;AN=6;AO=7;CIGAR=1X2M1X5M;DP=121;DPB=122.556;DPRA=0;EPP=18.2106;EPPR=146.711;GTI=0;LEN=1;MEANALT=6.5;MQM=20;MQMR=59.5059;NS=3;NUMALT=6;ODDS=0;PAIRED=0;PAIREDR=0.941176;PAO=0;PQA=0;PQR=0;PRO=0;QA=140;QR=3298;RO=85;RPL=0;RPP=18.2106;RPPR=170.622;RPR=7;RUN=1;SAF=0;SAP=18.2106;SAR=7;SRF=3;SRP=162.447;SRR=82;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|0:70:53,1,6,0,4,2,0:53:2069:1,6,0,4,2,0:40,120,0,62,81,0:0,-13.4265,-182.765,-8.59531,-175.702,-176.417,-15.9546,-183.066,-178.223,-185.587,-12.4449,-179.546,-174.705,-182.066,-180.862,-9.5323,-176.666,-171.824,-179.187,-175.667,-178.585,-15.9546,-183.066,-178.223,-185.587,-182.066,-179.187,-185.587 0|0:24:14,0,0,0,5,0,4:14:535:0,0,0,5,0,4:0,0,0,79,0,157:-8.28431,-12.4987,-56.4687,-12.4987,-56.4687,-56.4687,-12.4987,-56.4687,-56.4687,-56.4687,-8.34197,-52.2395,-52.2395,-52.2395,-50.7344,-12.4987,-56.4687,-56.4687,-56.4687,-52.2395,-56.4687,0,-44.0431,-44.0431,-44.0431,-39.8246,-44.0431,-42.839 0|0:27:18,2,1,2,1,2,0:18:694:2,1,2,1,2,0:80,20,10,17,80,0:0,-0.343538,-56.8814,-4.19247,-56.2599,-61.0005,-5.57769,-57.6186,-61.4361,-62.0566,-4.46424,-56.5291,-60.3471,-61.7054,-61.2697,-2.00566,-54.0854,-57.9036,-59.2627,-58.1729,-58.5248,-5.41854,-57.4834,-61.3015,-62.6587,-61.5707,-59.1268,-62.5256 dDocent_Contig_3818 147 . T G 35.8233 . AB=0.103448;ABP=201.064;AC=1;AF=0.166667;AN=6;AO=16;CIGAR=1X;DP=246;DPB=246;DPRA=1.86538;EPP=37.7539;EPPR=502.449;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=567;QR=8535;RO=230;RPL=0;RPP=37.7539;RPPR=502.449;RPR=16;RUN=1;SAF=0;SAP=37.7539;SAR=16;SRF=0;SRP=502.449;SRR=230;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:145:130,15:130:4776:15:538:-5.1051,0,-386.244 0/0:52:52,0:52:1959:0:0:0,-15.6536,-176.554 0/0:49:48,1:48:1800:1:29:0,-11.8508,-159.356 dDocent_Contig_3819 12 . G T 129.673 . AB=0.113333;ABP=197.806;AC=1;AF=0.166667;AN=6;AO=21;CIGAR=1X;DP=338;DPB=338;DPRA=1.17327;EPP=48.6112;EPPR=691.367;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=812;QR=12583;RO=317;RPL=0;RPP=48.6112;RPPR=691.367;RPR=21;RUN=1;SAF=21;SAP=48.6112;SAR=0;SRF=317;SRP=691.367;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:150:133,17:133:5323:17:659:-14.4902,0,-433.759 0/0:87:83,4:83:3310:4:153:0,-12.0482,-283.809 0/0:101:101,0:101:3950:0:0:0,-30.404,-355.508 dDocent_Contig_3820 8 . T C 1270.34 . AB=0.257919;ABP=115.504;AC=3;AF=0.5;AN=6;AO=57;CIGAR=1X;DP=221;DPB=221;DPRA=0;EPP=126.784;EPPR=359.132;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=2201;QR=6293;RO=164;RPL=0;RPP=126.784;RPPR=359.132;RPR=57;RUN=1;SAF=57;SAP=126.784;SAR=0;SRF=164;SRP=359.132;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:136:104,32:104:3998:32:1231:-70.1422,0,-318.97 0/1:29:20,9:20:769:9:351:-23.222,0,-60.8085 0/1:56:40,16:40:1526:16:619:-39.1923,0,-120.756 dDocent_Contig_3821 16 . A G 639.397 . AB=0.15082;ABP=326.019;AC=3;AF=0.5;AN=6;AO=46;CIGAR=1X;DP=305;DPB=305;DPRA=0;EPP=102.898;EPPR=565.422;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=59.8301;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=1781;QR=10120;RO=259;RPL=0;RPP=102.898;RPPR=565.422;RPR=46;RUN=1;SAF=46;SAP=102.898;SAR=0;SRF=259;SRP=565.422;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:193:166,27:166:6460:27:1037:-35.5143,0,-522.95 0/1:37:30,7:30:1170:7:267:-13.2475,0,-94.4439 0/1:75:63,12:63:2490:12:477:-20.7008,0,-201.599 dDocent_Contig_3822 98 . N A 75.1358 . AB=0;ABP=0;AC=4;AF=1;AN=4;AO=3;CIGAR=1X;DP=3;DPB=3;DPRA=0;EPP=9.52472;EPPR=0;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=0;NS=2;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=75;QR=0;RO=0;RPL=3;RPP=9.52472;RPPR=0;RPR=0;RUN=1;SAF=3;SAP=9.52472;SAR=0;SRF=0;SRP=0;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 1/1:2:0,2:0:0:2:70:-6.6474,-0.60206,0 ./.:.:.:.:.:.:.:. 1/1:1:0,1:0:0:1:5:-0.499999,-0.30103,0 dDocent_Contig_3823 11 . G T 2166.38 . AB=0.0674157;ABP=147.669;AC=1;AF=0.166667;AN=6;AO=6;CIGAR=1X1M1X1M1X;DP=101;DPB=101;DPRA=0;EPP=16.0391;EPPR=31.2394;GTI=0;LEN=1;MEANALT=3.5;MQM=60;MQMR=60;NS=3;NUMALT=4;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=242;QR=503;RO=13;RPL=0;RPP=16.0391;RPPR=31.2394;RPR=6;RUN=1;SAF=6;SAP=16.0391;SAR=0;SRF=13;SRP=31.2394;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 1|0:68:5,5,5,48,5:5:195:5,5,48,5:201,197,1895,190:-154.948,-139.888,-154.41,-140.246,-139.708,-154.768,-0.540522,0,-0.35962,-2.11845,-140.878,-140.341,-140.698,-0.995629,-155.4 0|0:12:2,0,0,8,2:2:71:0,0,8,2:0,0,314,81:-26.1564,-26.7584,-32.5365,-26.7584,-32.5365,-32.5365,-0.94415,-6.70401,-6.70401,-4.29577,-20.0768,-25.8541,-25.8541,0,-25.252 0|0:21:6,1,1,13,0:6:237:1,1,13,0:41,36,518,0:-40.8607,-39.2819,-58.4832,-39.7321,-55.8486,-58.9323,0,-16.1234,-16.5772,-15.5966,-42.6669,-58.7842,-59.2333,-19.51,-62.169 dDocent_Contig_3824 1 . N C 214.312 . AB=0;ABP=0;AC=2;AF=1;AN=2;AO=6;CIGAR=1X;DP=6;DPB=6;DPRA=0;EPP=16.0391;EPPR=0;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=0;NS=1;NUMALT=1;ODDS=8.76405;PAIRED=1;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=234;QR=0;RO=0;RPL=0;RPP=16.0391;RPPR=0;RPR=6;RUN=1;SAF=6;SAP=16.0391;SAR=0;SRF=0;SRP=0;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL ./.:.:.:.:.:.:.:. 1/1:6:0,6:0:0:6:234:-21.4311,-1.80618,0 ./.:.:.:.:.:.:.:. dDocent_Contig_3825 7 . C A 218.165 . AB=0.176471;ABP=95.7449;AC=3;AF=0.5;AN=6;AO=18;CIGAR=1X2M;DP=102;DPB=102;DPRA=0;EPP=42.0968;EPPR=172.385;GTI=0;LEN=1;MEANALT=2;MQM=38.7222;MQMR=54.0897;NS=3;NUMALT=2;ODDS=0;PAIRED=0.944444;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=662;QR=2991;RO=78;RPL=0;RPP=42.0968;RPPR=172.385;RPR=18;RUN=1;SAF=18;SAP=42.0968;SAR=0;SRF=78;SRP=172.385;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|1:51:41,2,8:41:1580:2,8:78,299:-10.825,-21.1164,-149.053,0,-126.655,-126.327 0|1:28:20,2,6:20:764:2,6:71,211:-9.87976,-12.7877,-73.879,0,-58.6808,-60.0016 0|1:23:17,2,4:17:647:2,4:77,152:-6.63465,-7.81146,-59.967,0,-48.8899,-51.648 dDocent_Contig_3827 15 . C T 2342.79 . AB=0.151899;ABP=1582.83;AC=3;AF=0.5;AN=6;AO=228;CIGAR=1X;DP=1501;DPB=1501;DPRA=0;EPP=498.106;EPPR=2758.61;GTI=0;LEN=1;MEANALT=1.66667;MQM=42.4123;MQMR=44.9858;NS=3;NUMALT=1;ODDS=0;PAIRED=0.947368;PAIREDR=0.87234;PAO=0;PQA=0;PQR=0;PRO=0;QA=9179;QR=50707;RO=1269;RPL=0;RPP=498.106;RPPR=2758.61;RPR=228;RUN=1;SAF=228;SAP=498.106;SAR=0;SRF=1269;SRP=2758.61;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:804:682,119:682:27267:119:4791:-119.466,0,-1853.95 0/1:291:259,31:259:10322:31:1234:-1.25568,0,-726.454 0/1:406:328,78:328:13118:78:3154:-118.311,0,-905.084 dDocent_Contig_3830 9 . T A 4037.49 . AB=0.134199;ABP=271.493;AC=1;AF=0.166667;AN=6;AO=31;CIGAR=2X4M;DP=255;DPB=255;DPRA=0;EPP=70.3259;EPPR=189.757;GTI=0;LEN=1;MEANALT=4;MQM=60;MQMR=60;NS=3;NUMALT=3;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=1215;QR=3352;RO=86;RPL=0;RPP=70.3259;RPPR=189.757;RPR=31;RUN=1;SAF=31;SAP=70.3259;SAR=0;SRF=86;SRP=189.757;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|0:190:67,0,23,98:67:2617:0,23,98:0,899,3888:-299.847,-320.016,-535.155,-246.107,-461.245,-454.321,0,-215.141,-141.231,-185.64 0|0:24:11,0,0,13:11:432:0,0,13:0,0,529:-40.7319,-44.0433,-79.5688,-44.0433,-79.5688,-79.5688,0,-35.9243,-35.9243,-32.0109 1|0:41:8,3,8,21:8:303:3,8,21:119,316,848:-68.6831,-61.2956,-85.2256,-45.089,-60.125,-67.513,-1.17705,-16.2117,0,-19.688 dDocent_Contig_3831 16 . C A 245.603 . AB=0.108359;ABP=433.332;AC=3;AF=0.5;AN=6;AO=35;CIGAR=1X;DP=323;DPB=323;DPRA=0;EPP=79.0118;EPPR=628.394;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=59.5833;NS=3;NUMALT=1;ODDS=1.38778e-17;PAIRED=1;PAIREDR=0.979167;PAO=0;PQA=0;PQR=0;PRO=0;QA=1403;QR=11526;RO=288;RPL=0;RPP=79.0118;RPPR=628.394;RPR=35;RUN=1;SAF=35;SAP=79.0118;SAR=0;SRF=288;SRP=628.394;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:193:174,19:174:6951:19:769:-11.4314,0,-567.155 0/1:47:39,8:39:1569:8:309:-14.0174,0,-127.297 0/1:83:75,8:75:3006:8:325:-4.63394,0,-243.144 dDocent_Contig_3832 42 . C A 65.7941 . AB=0.25;ABP=11.6962;AC=1;AF=0.166667;AN=6;AO=10;CIGAR=1X;DP=161;DPB=161;DPRA=0;EPP=24.725;EPPR=330.903;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=383;QR=5944;RO=151;RPL=0;RPP=24.725;RPPR=330.903;RPR=10;RUN=1;SAF=10;SAP=24.725;SAR=0;SRF=151;SRP=330.903;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:105:101,4:101:3966:4:162:0,-16.6412,-341.957 0/1:16:12,4:12:467:4:143:-8.40332,0,-37.5603 0/0:40:38,2:38:1511:2:78:0,-4.6379,-128.83 dDocent_Contig_3833 42 . A T 563.368 . AB=0.111475;ABP=802.81;AC=1;AF=0.166667;AN=6;AO=171;CIGAR=1X;DP=2371;DPB=2371;DPRA=0;EPP=374.332;EPPR=4769.4;GTI=0;LEN=1;MEANALT=1.33333;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=0.987722;PAO=0;PQA=0;PQR=0;PRO=0;QA=6820;QR=87852;RO=2199;RPL=0;RPP=374.332;RPPR=4778.08;RPR=171;RUN=1;SAF=171;SAP=374.332;SAR=0;SRF=2198;SRP=4769.4;SRR=1;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:1292:1228,64:1228:49113:64:2587:0,-155.983,-4182.43 0/0:469:430,39:430:17141:39:1549:0,-1.53027,-1401.67 0/1:610:541,68:541:21598:68:2684:-58.1606,0,-1758.43 dDocent_Contig_3834 33 . G T 348.618 . AB=0.156716;ABP=140.17;AC=1;AF=0.166667;AN=6;AO=22;CIGAR=1X;DP=188;DPB=188;DPRA=1.97368;EPP=50.7827;EPPR=363.475;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=6.93889e-18;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=886;QR=6499;RO=166;RPL=0;RPP=50.7827;RPPR=363.475;RPR=22;RUN=1;SAF=22;SAP=50.7827;SAR=0;SRF=166;SRP=363.475;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:134:113,21:113:4423:21:849:-36.3845,0,-357.702 0/0:16:15,1:15:580:1:37:0,-1.11865,-48.8401 0/0:38:38,0:38:1496:0:0:0,-11.4391,-134.892 dDocent_Contig_3835 13 . T A 4194.68 . AB=0.556034;ABP=9.33752;AC=4;AF=0.666667;AN=6;AO=129;CIGAR=1M1X2M;DP=232;DPB=226.5;DPRA=0;EPP=283.13;EPPR=85.5263;GTI=0;LEN=1;MEANALT=3;MQM=60;MQMR=60;NS=3;NUMALT=3;ODDS=0;PAIRED=0.968992;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=5042;QR=1530;RO=38;RPL=0;RPP=283.13;RPPR=85.5263;RPR=129;RUN=1;SAF=129;SAP=283.13;SAR=0;SRF=38;SRP=85.5263;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 1|1:114:27,31,10,46:27:1089:31,10,46:1243,405,1839:-155.987,-61.7036,-142.138,-130.719,-118.074,-217.475,-12.6436,0,-69.014,-88.5626 0|1:36:4,6,7,19:4:161:6,7,19:243,275,738:-68.7713,-49.9352,-61.3999,-47.3564,-40.5867,-58.5197,-9.34425,-2.57401,0,-16.8947 0|1:82:7,6,5,64:7:280:6,5,64:239,190,2465:-200.229,-182.655,-203.915,-186.761,-190.145,-208.322,0,-3.38578,-7.49812,-3.80296 dDocent_Contig_3836 13 . C A 1598.42 . AB=0.0810811;ABP=59.4099;AC=0;AF=0;AN=6;AO=3;CIGAR=4M1X9M1X3M;DP=106;DPB=106.778;DPRA=0;EPP=9.52472;EPPR=70.3259;GTI=0;LEN=1;MEANALT=5;MQM=60;MQMR=60;NS=3;NUMALT=5;ODDS=0;PAIRED=0;PAIREDR=0.677419;PAO=0;PQA=0;PQR=0;PRO=0;QA=114;QR=1230;RO=31;RPL=0;RPP=9.52472;RPPR=70.3259;RPR=3;RUN=1;SAF=3;SAP=9.52472;SAR=0;SRF=31;SRP=70.3259;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|0:55:20,3,0,0,24,5:20:792:3,0,0,24,5:104,0,0,913,200:-66.8729,-65.1743,-129.466,-72.8935,-130.369,-138.09,-72.8935,-130.369,-138.09,-138.09,0,-57.486,-65.2028,-65.2028,-57.9781,-56.414,-113.893,-121.613,-121.613,-48.7256,-120.108 0|0:14:0,0,0,2,12,0:0:0:0,0,2,12,0:0,0,72,466,0:-43.1777,-43.1777,-43.1777,-43.1777,-43.1777,-43.1777,-37.5325,-37.5325,-37.5325,-36.9304,-5.99684,-5.99684,-5.99684,0,-2.38448,-43.1777,-43.1777,-43.1777,-37.5325,-5.99684,-43.1777 0|0:37:11,2,3,1,18,2:11:438:2,3,1,18,2:67,114,41,714,80:-55.2582,-53.5259,-88.9924,-49.2232,-80.2486,-84.3904,-55.2511,-86.2764,-81.9753,-91.0206,0,-31.0416,-26.7367,-32.7641,-30.6643,-51.9785,-83.0043,-78.703,-84.7312,-29.4913,-87.4473 dDocent_Contig_3837 22 . G A 245.239 . AB=0.25;ABP=26.8965;AC=1;AF=0.166667;AN=6;AO=12;CIGAR=1X;DP=103;DPB=103;DPRA=2.71875;EPP=29.068;EPPR=200.614;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=477;QR=3603;RO=91;RPL=0;RPP=29.068;RPPR=200.614;RPR=12;RUN=1;SAF=12;SAP=29.068;SAR=0;SRF=91;SRP=200.614;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:43:42,1:42:1651:1:41:0,-8.84972,-144.725 0/0:16:16,0:16:635:0:0:0,-4.81648,-57.4844 0/1:44:33,11:33:1317:11:436:-26.3479,0,-105.55 dDocent_Contig_3838 126 . T C 81.8326 . AB=0.263158;ABP=12.2676;AC=1;AF=0.166667;AN=6;AO=5;CIGAR=1X;DP=72;DPB=72;DPRA=0.716981;EPP=13.8677;EPPR=146.327;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=171;QR=2199;RO=66;RPL=0;RPP=13.8677;RPPR=146.327;RPR=5;RUN=1;SAF=0;SAP=13.8677;SAR=5;SRF=0;SRP=146.327;SRR=66;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:44:43,0:43:1424:0:0:0,-12.9443,-128.113 0/0:9:9,0:9:303:0:0:0,-2.70927,-27.5981 0/1:19:14,5:14:472:5:171:-10.0072,0,-37.0842 dDocent_Contig_3839 9 . T A 25612.4 . AB=0.038943;ABP=2658.12;AC=0;AF=0;AN=6;AO=56;CIGAR=1X1M1X3M1X4M;DP=1438;DPB=1492.82;DPRA=0;EPP=124.613;EPPR=224.5;GTI=0;LEN=1;MEANALT=20;MQM=60;MQMR=57.5588;NS=3;NUMALT=4;ODDS=0;PAIRED=1;PAIREDR=0.882353;PAO=0;PQA=0;PQR=0;PRO=0;QA=2196;QR=3991;RO=102;RPL=0;RPP=124.613;RPPR=224.5;RPR=56;RUN=1;SAF=56;SAP=124.613;SAR=0;SRF=102;SRP=224.5;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|0:900:69,37,104,181,364:69:2705:37,104,181,364:1449,3944,6999,14504:-1527.95,-1429.57,-1638.82,-1228.03,-1329.27,-1417.11,-973.913,-1075.16,-873.617,-1139.82,-354.414,-455.657,-254.117,0,-465.23 0|0:146:11,8,4,29,72:11:423:8,4,29,72:318,141,1143,2875:-293.41,-270.539,-302.234,-285.517,-293.438,-318.416,-202.688,-210.608,-225.587,-228.061,-59.9361,-67.8552,-82.8353,0,-72.3646 0|0:392:22,11,40,80,173:22:863:11,40,80,173:429,1554,3083,6914:-745.405,-716.765,-784,-624.356,-659.64,-682.861,-498.922,-534.206,-441.797,-545.386,-182.56,-217.845,-125.435,0,-201.029 dDocent_Contig_3840 11 . A C 2228.58 . AB=0.0437956;ABP=250.669;AC=0;AF=0;AN=6;AO=6;CIGAR=1X3M2D1X4M;DP=156;DPB=154.909;DPRA=0;EPP=16.0391;EPPR=137.642;GTI=0;LEN=1;MEANALT=4;MQM=54.1667;MQMR=60;NS=3;NUMALT=3;ODDS=2.77556e-17;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=244;QR=2470;RO=62;RPL=0;RPP=16.0391;RPPR=137.642;RPR=6;RUN=1;SAF=6;SAP=16.0391;SAR=0;SRF=62;SRP=137.642;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|0:90:28,3,55,1:28:1110:3,55,1:122,2206,41:-172.797,-171.223,-261.686,0,-81.36,-74.8071,-177.842,-259.205,-87.9793,-268.908 0|0:19:8,0,6,4:8:320:0,6,4:0,242,160:-17.487,-19.8953,-46.2552,0,-26.3604,-24.5543,-6.71586,-33.0753,-13.1803,-31.8711 0|0:47:26,3,14,2:26:1040:3,14,2:122,559,81:-38.0973,-35.889,-120.658,0,-75.634,-81.4543,-39.2444,-114.882,-78.9893,-124.314 dDocent_Contig_3841 51 . C T 162.551 . AB=0.304348;ABP=10.6577;AC=2;AF=0.333333;AN=6;AO=8;CIGAR=1X;DP=46;DPB=46;DPRA=0;EPP=20.3821;EPPR=85.5263;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=322;QR=1530;RO=38;RPL=8;RPP=20.3821;RPPR=85.5263;RPR=0;RUN=1;SAF=8;SAP=20.3821;SAR=0;SRF=38;SRP=85.5263;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:23:22,1:22:884:1:41:0,-2.82912,-75.7715 0/1:13:7,6:7:279:6:240:-18.0618,0,-21.5669 0/1:10:9,1:9:367:1:41:-1.08427,0,-30.3847 dDocent_Contig_3842 99 . N T 160.434 . AB=0;ABP=0;AC=4;AF=1;AN=4;AO=5;CIGAR=2X;DP=5;DPB=14;DPRA=0;EPP=13.8677;EPPR=0;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=0;NS=2;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=0;PAO=17;PQA=611;PQR=0;PRO=0;QA=175;QR=0;RO=0;RPL=5;RPP=13.8677;RPPR=0;RPR=0;RUN=1;SAF=5;SAP=13.8677;SAR=0;SRF=0;SRP=0;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 1|1:4:0,4:0:0:4:140:-12.5922,-1.20412,0 1|1:1:0,1:0:0:1:35:-3.14878,-0.30103,0 .:.:.:.:.:.:.:. dDocent_Contig_3846 107 . N T 217.168 . AB=0;ABP=0;AC=6;AF=1;AN=6;AO=7;CIGAR=1X;DP=7;DPB=7;DPRA=0;EPP=18.2106;EPPR=0;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=0;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=225;QR=0;RO=0;RPL=0;RPP=18.2106;RPPR=0;RPR=7;RUN=1;SAF=0;SAP=18.2106;SAR=7;SRF=0;SRP=0;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 1/1:5:0,5:0:0:5:157:-14.4403,-1.50515,0 1/1:1:0,1:0:0:1:34:-3.39891,-0.30103,0 1/1:1:0,1:0:0:1:34:-3.39891,-0.30103,0 dDocent_Contig_3847 172 . A C 1358.94 . AB=0.638889;ABP=15.074;AC=3;AF=0.5;AN=6;AO=46;CIGAR=1X;DP=72;DPB=72;DPRA=0;EPP=102.898;EPPR=59.4686;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=3.46945e-18;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=1801;QR=1026;RO=26;RPL=46;RPP=102.898;RPPR=59.4686;RPR=0;RUN=1;SAF=0;SAP=102.898;SAR=46;SRF=0;SRP=59.4686;SRR=26;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:25:5,20:5:200:20:792:-64.0713,0,-10.8527 0/1:27:7,20:7:282:20:778:-62.2129,0,-17.6243 0/1:20:14,6:14:544:6:231:-15.133,0,-43.2728 dDocent_Contig_3848 28 . C T 2219.84 . AB=0.469136;ABP=4.35072;AC=3;AF=0.5;AN=6;AO=76;CIGAR=1X;DP=162;DPB=162;DPRA=0;EPP=168.042;EPPR=189.757;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=3060;QR=3465;RO=86;RPL=0;RPP=168.042;RPPR=189.757;RPR=76;RUN=1;SAF=76;SAP=168.042;SAR=0;SRF=86;SRP=189.757;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:88:43,45:43:1741:45:1821:-137.601,0,-130.408 0/1:30:19,11:19:746:11:444:-31.2845,0,-58.4275 0/1:44:24,20:24:978:20:795:-58.6212,0,-75.0692 dDocent_Contig_3849 193 . C G 57.911 . AB=0.119403;ABP=87.3088;AC=2;AF=0.333333;AN=6;AO=8;CIGAR=1X1M1X;DP=73;DPB=73;DPRA=5.58333;EPP=20.3821;EPPR=144.156;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=319;QR=2596;RO=65;RPL=8;RPP=20.3821;RPPR=144.156;RPR=0;RUN=1;SAF=0;SAP=20.3821;SAR=8;SRF=0;SRP=144.156;SRR=65;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|1:41:36,5:36:1428:5:201:-6.12866,0,-116.435 0|0:6:6,0:6:243:0:0:0,-1.80618,-22.2482 0|1:26:23,3:23:925:3:118:-3.17573,0,-75.7284 dDocent_Contig_3850 140 . G C 117.51 . AB=0.101852;ABP=151.716;AC=1;AF=0.166667;AN=6;AO=11;CIGAR=9M1X2M;DP=119;DPB=109.833;DPRA=4.90909;EPP=26.8965;EPPR=213.643;GTI=0;LEN=1;MEANALT=2;MQM=60;MQMR=60;NS=3;NUMALT=2;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=368;QR=3435;RO=97;RPL=0;RPP=26.8965;RPPR=213.643;RPR=11;RUN=1;SAF=0;SAP=26.8965;SAR=11;SRF=0;SRP=213.643;SRR=97;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|0:83:66,10,7:66:2332:10,7:356,220:-9.17048,0,-186.937,-11.3727,-172.268,-199.175 0|0:11:11,0,0:11:380:0,0:0,0:0,-3.31133,-34.5296,-3.31133,-34.5296,-34.5296 0|1:25:20,1,4:20:723:1,4:35,148:-6.1034,-9.28025,-67.9883,0,-56.1798,-57.8229 dDocent_Contig_3852 19 . T A 278.601 . AB=0.117647;ABP=348.402;AC=3;AF=0.5;AN=6;AO=32;CIGAR=1X;DP=272;DPB=272;DPRA=0;EPP=72.4974;EPPR=521.992;GTI=0;LEN=1;MEANALT=1.33333;MQM=60;MQMR=58.9916;NS=3;NUMALT=1;ODDS=0;PAIRED=0;PAIREDR=0.138075;PAO=0;PQA=0;PQR=0;PRO=0;QA=1266;QR=9562;RO=239;RPL=0;RPP=72.4974;RPPR=521.992;RPR=32;RUN=1;SAF=32;SAP=72.4974;SAR=0;SRF=239;SRP=521.992;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:103:88,14:88:3531:14:557:-19.3702,0,-284.444 0/1:67:61,6:61:2440:6:239:-1.71616,0,-199.561 0/1:102:90,12:90:3591:12:470:-11.9433,0,-290.955 dDocent_Contig_3853 50 . G C 79.4488 . AB=0.12963;ABP=67.3502;AC=1;AF=0.166667;AN=6;AO=11;CIGAR=1X;DP=274;DPB=274;DPRA=0;EPP=26.8965;EPPR=574.108;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=6.93889e-18;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=439;QR=10334;RO=263;RPL=11;RPP=26.8965;RPPR=574.108;RPR=0;RUN=1;SAF=11;SAP=26.8965;SAR=0;SRF=263;SRP=574.108;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:128:125,3:125:4897:3:113:0,-27.9943,-430.109 0/1:54:47,7:47:1875:7:285:-9.76879,0,-152.702 0/0:92:91,1:91:3562:1:41:0,-23.6002,-316.539 dDocent_Contig_3855 15 . G A 4933.27 . AB=0.759804;ABP=122.612;AC=3;AF=0.5;AN=6;AO=155;CIGAR=1X;DP=204;DPB=204;DPRA=0;EPP=339.589;EPPR=109.412;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=0.980645;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=6219;QR=1957;RO=49;RPL=0;RPP=339.589;RPPR=109.412;RPR=155;RUN=1;SAF=155;SAP=339.589;SAR=0;SRF=49;SRP=109.412;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:115:26,89:26:1036:89:3580:-287.604,0,-58.9088 0/1:25:9,16:9:361:16:639:-50.3177,0,-25.3278 0/1:64:14,50:14:560:50:2000:-160.928,0,-31.4759 dDocent_Contig_3857 29 . T A 730.565 . AB=0.172;ABP=236.626;AC=2;AF=0.333333;AN=6;AO=45;CIGAR=1M1X1M1I2M;DP=346;DPB=353;DPRA=0;EPP=100.727;EPPR=632.737;GTI=0;LEN=1;MEANALT=2;MQM=60;MQMR=60;NS=3;NUMALT=2;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=1754;QR=11420;RO=290;RPL=0;RPP=100.727;RPPR=632.737;RPR=45;RUN=1;SAF=45;SAP=100.727;SAR=0;SRF=290;SRP=632.737;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|1:192:152,37,0:152:5984:37,0:1433,0:-71.9724,0,-481.143,-117.729,-492.281,-609.987 0|1:58:52,6,0:52:2055:6,0:241,0:-4.60656,0,-167.688,-20.2601,-169.495,-189.354 0|0:96:86,2,7:86:3381:2,7:80,274:0,-19.2964,-296.791,-3.36004,-274.864,-279.347 dDocent_Contig_3859 123 . G C 2137.54 . AB=0.605634;ABP=16.7732;AC=3;AF=0.5;AN=6;AO=86;CIGAR=1X;DP=142;DPB=142;DPRA=0;EPP=189.757;EPPR=124.613;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=6.93889e-18;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=2901;QR=1908;RO=56;RPL=0;RPP=189.757;RPPR=124.613;RPR=86;RUN=1;SAF=0;SAP=189.757;SAR=86;SRF=0;SRP=124.613;SRR=56;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:70:17,53:17:576:53:1774:-138.867,0,-31.0852 0/1:10:6,4:6:214:4:140:-9.93463,0,-16.5975 0/1:62:33,29:33:1118:29:987:-70.4749,0,-82.2584 dDocent_Contig_3860 50 . C T 584.224 . AB=0.338028;ABP=19.1893;AC=3;AF=0.5;AN=6;AO=24;CIGAR=1X;DP=71;DPB=71;DPRA=0;EPP=55.1256;EPPR=105.07;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=57.7872;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=0.957447;PAO=0;PQA=0;PQR=0;PRO=0;QA=936;QR=1881;RO=47;RPL=24;RPP=55.1256;RPPR=105.07;RPR=0;RUN=1;SAF=24;SAP=55.1256;SAR=0;SRF=47;SRP=105.07;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:36:28,8:28:1141:8:310:-17.4217,0,-92.1283 0/1:21:15,6:15:576:6:231:-14.8317,0,-39.8687 0/1:14:4,10:4:164:10:395:-31.6918,0,-10.9355 dDocent_Contig_3861 19 . T C 3869.55 . AB=0.342723;ABP=94.5384;AC=3;AF=0.5;AN=6;AO=146;CIGAR=1X;DP=426;DPB=426;DPRA=0;EPP=320.045;EPPR=611.023;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=5779;QR=11053;RO=280;RPL=0;RPP=320.045;RPPR=611.023;RPR=146;RUN=1;SAF=146;SAP=320.045;SAR=0;SRF=280;SRP=611.023;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:280:181,99:181:7172:99:3893:-266.08,0,-560.887 0/1:37:29,8:29:1143:8:321:-18.1202,0,-92.014 0/1:109:70,39:70:2738:39:1565:-108.277,0,-213.739 dDocent_Contig_3862 107 . N A 64.5902 . AB=0;ABP=0;AC=2;AF=1;AN=2;AO=2;CIGAR=1X;DP=2;DPB=2;DPRA=0;EPP=7.35324;EPPR=0;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=0;NS=1;NUMALT=1;ODDS=5.99146;PAIRED=1;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=68;QR=0;RO=0;RPL=0;RPP=7.35324;RPPR=0;RPR=2;RUN=1;SAF=0;SAP=7.35324;SAR=2;SRF=0;SRP=0;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 1/1:2:0,2:0:0:2:68:-6.45793,-0.60206,0 ./.:.:.:.:.:.:.:. ./.:.:.:.:.:.:.:. dDocent_Contig_3863 8 . T C 49.876 . AB=0.230769;ABP=11.1951;AC=1;AF=0.166667;AN=6;AO=3;CIGAR=1X;DP=76;DPB=76;DPRA=0.412698;EPP=9.52472;EPPR=161.528;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=0.986301;PAO=0;PQA=0;PQR=0;PRO=0;QA=115;QR=2805;RO=73;RPL=0;RPP=9.52472;RPPR=161.528;RPR=3;RUN=1;SAF=3;SAP=9.52472;SAR=0;SRF=73;SRP=161.528;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:54:54,0:54:2073:0:0:0,-16.2556,-186.801 0/0:9:9,0:9:346:0:0:0,-2.70927,-31.4988 0/1:13:10,3:10:386:3:115:-6.8115,0,-31.1836 dDocent_Contig_3864 7 . A T 383.539 . AB=0.05;ABP=108.544;AC=1;AF=0.166667;AN=6;AO=5;CIGAR=1X3M;DP=240;DPB=240;DPRA=0;EPP=13.8677;EPPR=428.619;GTI=0;LEN=1;MEANALT=2.5;MQM=53;MQMR=59.9541;NS=3;NUMALT=3;ODDS=0;PAIRED=0;PAIREDR=0.887755;PAO=0;PQA=0;PQR=0;PRO=0;QA=189;QR=7544;RO=196;RPL=0;RPP=13.8677;RPPR=428.619;RPR=5;RUN=1;SAF=5;SAP=13.8677;SAR=0;SRF=196;SRP=428.619;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|1:138:110,23,0,1:110:4240:23,0,1:879,0,39:-37.2982,0,-341.237,-70.4115,-348.161,-418.572,-67.2051,-344.955,-415.367,-415.066 0|0:42:40,0,2,0:40:1536:0,2,0:0,73,0:0,-12.0412,-138.161,-5.99742,-132.469,-131.867,-12.0412,-138.161,-132.469,-138.161 0|0:60:46,3,3,6:46:1768:3,3,6:114,116,225:-4.57816,-9.09691,-153.344,-8.91601,-144.739,-153.164,0,-135.82,-135.64,-143.342 dDocent_Contig_3865 54 . A G 555.941 . AB=0.314286;ABP=23.9805;AC=1;AF=0.166667;AN=6;AO=27;CIGAR=1X;DP=198;DPB=198;DPRA=0;EPP=61.6401;EPPR=372.161;GTI=0;LEN=1;MEANALT=1.33333;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=1057;QR=6686;RO=170;RPL=27;RPP=61.6401;RPPR=372.161;RPR=0;RUN=1;SAF=27;SAP=61.6401;SAR=0;SRF=170;SRP=372.161;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:70:47,22:47:1830:22:863:-57.1166,0,-144.061 0/0:49:45,4:45:1794:4:153:0,-0.609567,-147.538 0/0:79:78,1:78:3062:1:41:0,-19.6868,-271.593 dDocent_Contig_3866 9 . T A 306.18 . AB=0.464286;ABP=3.32051;AC=2;AF=0.333333;AN=6;AO=14;CIGAR=1X;DP=51;DPB=51;DPRA=0;EPP=33.4109;EPPR=83.3548;GTI=0;LEN=1;MEANALT=1;MQM=38;MQMR=59.4324;NS=3;NUMALT=1;ODDS=0;PAIRED=0;PAIREDR=0.972973;PAO=0;PQA=0;PQR=0;PRO=0;QA=561;QR=1426;RO=37;RPL=0;RPP=33.4109;RPPR=83.3548;RPR=14;RUN=1;SAF=14;SAP=33.4109;SAR=0;SRF=37;SRP=83.3548;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:23:22,1:22:850:1:41:0,-3.3001,-73.1992 0/1:17:7,10:7:269:10:404:-27.6506,0,-19.2649 0/1:11:8,3:8:307:3:116:-6.49024,0,-24.6803 dDocent_Contig_3867 19 . G A 2280.01 . AB=0.401198;ABP=17.1704;AC=2;AF=0.333333;AN=6;AO=67;CIGAR=1M1X2M;DP=167;DPB=187;DPRA=0;EPP=148.499;EPPR=131.127;GTI=0;LEN=1;MEANALT=2.33333;MQM=60;MQMR=60;NS=3;NUMALT=2;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=2673;QR=2279;RO=59;RPL=0;RPP=148.499;RPPR=131.127;RPR=67;RUN=1;SAF=67;SAP=148.499;SAR=0;SRF=59;SRP=131.127;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|1:76:40,11,25:40:1548:11,25:425,1004:-70.6998,-47.8391,-171.67,0,-92.2448,-119.625 0|1:55:9,12,33:9:341:12,33:460,1309:-114.853,-79.8114,-104.151,-9.80343,0,-27.8233 0|0:36:10,17,9:10:390:17,9:624,360:-47.9701,0,-26.935,-21.3143,-2.39304,-50.6712 dDocent_Contig_3868 110 . T A 208.862 . AB=0.37037;ABP=6.95112;AC=1;AF=0.166667;AN=6;AO=12;CIGAR=1X;DP=100;DPB=100;DPRA=4.5;EPP=29.068;EPPR=194.1;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=409;QR=3045;RO=88;RPL=0;RPP=29.068;RPPR=194.1;RPR=12;RUN=1;SAF=0;SAP=29.068;SAR=12;SRF=0;SRP=194.1;SRR=88;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:63:61,2:61:2103:2:70:0,-12.3175,-182.898 0/0:10:10,0:10:349:0:0:0,-3.0103,-31.7468 0/1:27:17,10:17:593:10:339:-22.7101,0,-45.5704 dDocent_Contig_3869 114 . G C 2436.29 . AB=0.329815;ABP=98.3546;AC=3;AF=0.5;AN=6;AO=125;CIGAR=1X;DP=379;DPB=379;DPRA=0;EPP=274.444;EPPR=539.364;GTI=0;LEN=1;MEANALT=1.66667;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=4008;QR=8298;RO=247;RPL=0;RPP=274.444;RPPR=539.364;RPR=125;RUN=1;SAF=0;SAP=274.444;SAR=125;SRF=0;SRP=539.364;SRR=247;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:223:148,69:148:4968:69:2198:-132.396,0,-381.612 0/1:53:40,12:40:1362:12:397:-20.3069,0,-107.147 0/1:103:59,44:59:1968:44:1413:-96.4496,0,-146.386 dDocent_Contig_3870 18 . A C 86.3466 . AB=0.0615385;ABP=220.091;AC=0;AF=0;AN=6;AO=9;CIGAR=2X;DP=154;DPB=154;DPRA=0;EPP=22.5536;EPPR=287.473;GTI=0;LEN=1;MEANALT=1.66667;MQM=60;MQMR=60;NS=3;NUMALT=2;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=362;QR=5184;RO=131;RPL=0;RPP=22.5536;RPPR=287.473;RPR=9;RUN=1;SAF=9;SAP=22.5536;SAR=0;SRF=131;SRP=287.473;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|0:86:70,6,10:70:2777:6,10:240,380:-10.0696,-11.3654,-238.159,0,-208.813,-225.572 0|0:44:38,2,4:38:1504:2,4:81,161:-1.82833,-6.58748,-129.751,0,-117.083,-122.559 0|0:24:23,1,0:23:903:1,0:41,0:0,-3.13015,-77.4836,-6.92369,-77.7846,-81.1694 dDocent_Contig_3871 18 . T A 1539.67 . AB=0.428571;ABP=8.59409;AC=2;AF=0.333333;AN=6;AO=56;CIGAR=1X;DP=164;DPB=164;DPRA=0;EPP=124.613;EPPR=237.529;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=2245;QR=4330;RO=108;RPL=0;RPP=124.613;RPPR=237.529;RPR=56;RUN=1;SAF=56;SAP=124.613;SAR=0;SRF=108;SRP=237.529;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:76:32,44:32:1290:44:1766:-136.272,0,-93.4853 0/1:50:40,10:40:1598:10:399:-21.2182,0,-129.005 0/0:38:36,2:36:1442:2:80:0,-3.84756,-122.436 dDocent_Contig_3872 41 . T A 4445.58 . AB=0.79096;ABP=133.164;AC=3;AF=0.5;AN=6;AO=140;CIGAR=1X;DP=177;DPB=177;DPRA=0;EPP=307.016;EPPR=83.3548;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=5586;QR=1487;RO=37;RPL=0;RPP=307.016;RPPR=83.3548;RPR=140;RUN=1;SAF=140;SAP=307.016;SAR=0;SRF=37;SRP=83.3548;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:64:13,51:13:527:51:2043:-164.792,0,-28.5108 0/1:66:12,54:12:479:54:2129:-171.928,0,-23.5885 0/1:47:12,35:12:481:35:1414:-113.361,0,-29.4924 dDocent_Contig_3873 27 . T A 262.191 . AB=0.141844;ABP=160.111;AC=3;AF=0.5;AN=6;AO=20;CIGAR=1X;DP=141;DPB=141;DPRA=0;EPP=46.4397;EPPR=265.758;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=6.93889e-18;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=802;QR=4823;RO=121;RPL=0;RPP=46.4397;RPPR=265.758;RPR=20;RUN=1;SAF=20;SAP=46.4397;SAR=0;SRF=121;SRP=265.758;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:87:74,13:74:2942:13:526:-21.4974,0,-238.681 0/1:23:19,4:19:761:4:164:-8.22621,0,-61.8888 0/1:31:28,3:28:1120:3:112:-1.11415,0,-91.7497 dDocent_Contig_3874 55 . C T 1094.23 . AB=0.369748;ABP=20.5463;AC=3;AF=0.5;AN=6;AO=44;CIGAR=1X;DP=119;DPB=119;DPRA=0;EPP=98.5551;EPPR=165.871;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=1664;QR=2999;RO=75;RPL=44;RPP=98.5551;RPPR=165.871;RPR=0;RUN=1;SAF=44;SAP=98.5551;SAR=0;SRF=75;SRP=165.871;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:55:43,12:43:1718:12:461:-25.28,0,-138.282 0/1:31:11,20:11:437:20:760:-59.3935,0,-30.3509 0/1:33:21,12:21:844:12:443:-30.2719,0,-66.3382 dDocent_Contig_3876 18 . G T 1060.63 . AB=0.282895;ABP=65.2401;AC=3;AF=0.5;AN=6;AO=43;CIGAR=1X;DP=152;DPB=152;DPRA=0;EPP=96.3836;EPPR=239.701;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=1737;QR=4346;RO=109;RPL=0;RPP=96.3836;RPPR=239.701;RPR=43;RUN=1;SAF=43;SAP=96.3836;SAR=0;SRF=109;SRP=239.701;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:91:68,23:68:2725:23:940:-57.505,0,-217.964 0/1:21:14,7:14:535:7:279:-19.1563,0,-42.1591 0/1:40:27,13:27:1086:13:518:-34.9249,0,-85.9856 dDocent_Contig_3877 12 . T C 88.2042 . AB=0.185185;ABP=26.2531;AC=1;AF=0.166667;AN=6;AO=6;CIGAR=1X;DP=48;DPB=48;DPRA=7.5;EPP=16.0391;EPPR=94.2121;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=0;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=239;QR=1675;RO=42;RPL=0;RPP=16.0391;RPPR=94.2121;RPR=6;RUN=1;SAF=6;SAP=16.0391;SAR=0;SRF=42;SRP=94.2121;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:27:22,5:22:878:5:201:-10.3431,0,-71.2001 0/0:3:3,0:3:119:0:0:0,-0.90309,-11.095 0/0:18:17,1:17:678:1:38:0,-1.62127,-57.5531 dDocent_Contig_3878 51 . C A 2072.64 . AB=0.314176;ABP=81.2915;AC=3;AF=0.5;AN=6;AO=82;CIGAR=1X2M1X;DP=261;DPB=261;DPRA=0;EPP=181.071;EPPR=376.504;GTI=0;LEN=1;MEANALT=1.66667;MQM=60;MQMR=60;NS=3;NUMALT=2;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=3213;QR=6804;RO=172;RPL=82;RPP=181.071;RPPR=376.504;RPR=0;RUN=1;SAF=82;SAP=181.071;SAR=0;SRF=172;SRP=376.504;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|1:158:91,63,4:91:3616:63,4:2459,163:-174.708,0,-278.72,-188.653,-284.237,-485.147 0|1:20:8,9,3:8:314:9,3:358,120:-27.0668,0,-23.1093,-19.5894,-15.9315,-44.5079 0|1:83:73,10,0:73:2874:10,0:396,0:-11.0128,0,-233.799,-32.988,-236.809,-269.402 dDocent_Contig_3879 8 . T C 985.822 . AB=0.114563;ABP=667.561;AC=1;AF=0.166667;AN=6;AO=66;CIGAR=2X2M1X3M1X2M2X3M1X2M3X4M1X1M1X;DP=680;DPB=680;DPRA=0;EPP=146.327;EPPR=986.687;GTI=0;LEN=1;MEANALT=10;MQM=60;MQMR=60;NS=3;NUMALT=4;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=2572;QR=17645;RO=453;RPL=0;RPP=146.327;RPPR=986.687;RPR=66;RUN=1;SAF=66;SAP=146.327;SAR=0;SRF=453;SRP=986.687;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|1:401:260,35,50,31,8:260:10143:35,50,31,8:1371,1945,1237,327:-81.5729,-47.1031,-870.325,0,-721.024,-818.708,-57.972,-778.996,-731.894,-882.4,-132.855,-853.877,-806.775,-864.747,-964.204 0|0:114:75,8,9,13,7:75:2899:8,9,13,7:308,354,523,265:-20.5322,-17.8222,-253.516,-13.9873,-226.804,-249.382,0,-212.821,-208.988,-234.195,-21.389,-234.203,-230.37,-216.387,-257.383 0|0:165:118,10,7,5,3:118:4603:10,7,5,3:397,273,190,123:0,-2.83397,-378.196,-13.0794,-358.766,-389.342,-19.9453,-365.631,-375.874,-396.809,-25.3672,-371.054,-381.297,-388.161,-402.834 dDocent_Contig_3882 56 . A G 113.48 . AB=0.179487;ABP=37.8095;AC=2;AF=0.333333;AN=6;AO=7;CIGAR=1X;DP=67;DPB=67;DPRA=0.696429;EPP=18.2106;EPPR=133.299;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=277;QR=2352;RO=60;RPL=7;RPP=18.2106;RPPR=133.299;RPR=0;RUN=1;SAF=7;SAP=18.2106;SAR=0;SRF=60;SRP=133.299;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:30:24,6:24:930:6:239:-12.8535,0,-74.9692 0/1:9:8,1:8:315:1:38:-1.088,0,-26.0021 0/0:28:28,0:28:1107:0:0:0,-8.42884,-99.9139 dDocent_Contig_3883 17 . A C 158.574 . AB=0.130841;ABP=129.666;AC=2;AF=0.333333;AN=6;AO=14;CIGAR=2X;DP=133;DPB=133;DPRA=2.05769;EPP=33.4109;EPPR=259.244;GTI=0;LEN=1;MEANALT=1.5;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=548;QR=4694;RO=118;RPL=0;RPP=33.4109;RPPR=259.244;RPR=14;RUN=1;SAF=14;SAP=33.4109;SAR=0;SRF=118;SRP=259.244;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|1:72:61,11:61:2438:11:430:-17.377,0,-197.896 0|0:26:26,0:26:1020:0:0:0,-7.82678,-92.097 0|1:35:31,3:31:1236:3:118:-0.362368,0,-100.87 dDocent_Contig_3884 16 . G T 125.03 . AB=0.163265;ABP=51.2702;AC=1;AF=0.166667;AN=6;AO=14;CIGAR=1X;DP=216;DPB=216;DPRA=0;EPP=33.4109;EPPR=441.648;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=0.985149;PAO=0;PQA=0;PQR=0;PRO=0;QA=559;QR=7930;RO=202;RPL=0;RPP=33.4109;RPPR=441.648;RPR=14;RUN=1;SAF=14;SAP=33.4109;SAR=0;SRF=202;SRP=441.648;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:133:129,4:129:5108:4:160:0,-25.2536,-444.823 0/0:34:32,2:32:1245:2:80:0,-2.64344,-104.733 0/1:49:41,8:41:1577:8:319:-14.3269,0,-127.434 dDocent_Contig_3885 139 . A T 384.399 . AB=0.0465116;ABP=233.439;AC=0;AF=0;AN=6;AO=6;CIGAR=4M3X;DP=155;DPB=147;DPRA=0;EPP=16.0391;EPPR=204.957;GTI=0;LEN=1;MEANALT=3;MQM=25;MQMR=60;NS=3;NUMALT=3;ODDS=1.38778e-17;PAIRED=0;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=238;QR=3490;RO=93;RPL=0;RPP=16.0391;RPPR=204.957;RPR=6;RUN=1;SAF=0;SAP=16.0391;SAR=6;SRF=0;SRP=204.957;SRR=93;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|0:87:50,13,19,3:50:1852:13,19,3:136,732,121:-22.7719,-32.8496,-180.511,0,-146.688,-145.953,-32.006,-178.615,-145.862,-182.711 0|0:26:13,4,8,0:13:500:4,8,0:41,312,0:-12.944,-15.4428,-55.349,0,-39.8172,-38.818,-16.8574,-56.5532,-41.2263,-57.9901 0|0:42:30,0,9,3:30:1138:0,9,3:0,348,117:-8.24694,-17.2778,-110.683,0,-93.4301,-90.7209,-11.4787,-104.892,-87.6432,-103.989 dDocent_Contig_3886 16 . A G 168.333 . AB=0.219512;ABP=31.0276;AC=2;AF=0.333333;AN=6;AO=9;CIGAR=1X;DP=58;DPB=58;DPRA=1.20588;EPP=22.5536;EPPR=109.412;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=355;QR=1976;RO=49;RPL=0;RPP=22.5536;RPPR=109.412;RPR=9;RUN=1;SAF=9;SAP=22.5536;SAR=0;SRF=49;SRP=109.412;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:27:22,5:22:894:5:203:-10.525,0,-72.6385 0/0:17:17,0:17:679:0:0:0,-5.11751,-61.4394 0/1:14:10,4:10:403:4:152:-9.83113,0,-32.4158 dDocent_Contig_3887 105 . N G 105.483 . AB=0;ABP=0;AC=4;AF=1;AN=4;AO=3;CIGAR=3X;DP=3;DPB=3;DPRA=0;EPP=9.52472;EPPR=0;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=0;NS=2;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=106;QR=0;RO=0;RPL=0;RPP=9.52472;RPPR=0;RPR=3;RUN=1;SAF=0;SAP=9.52472;SAR=3;SRF=0;SRP=0;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 1|1:2:0,2:0:0:2:70:-6.64733,-0.60206,0 .:.:.:.:.:.:.:. 1|1:1:0,1:0:0:1:36:-3.59827,-0.30103,0 dDocent_Contig_3888 49 . A C 627.372 . AB=0.139205;ABP=401.007;AC=3;AF=0.5;AN=6;AO=49;CIGAR=1X;DP=352;DPB=352;DPRA=0;EPP=109.412;EPPR=637.196;GTI=0;LEN=1;MEANALT=1.66667;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=1921;QR=11920;RO=300;RPL=0;RPP=109.412;RPPR=637.196;RPR=49;RUN=1;SAF=49;SAP=109.412;SAR=0;SRF=300;SRP=654.452;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:189:164,25:164:6498:25:959:-29.7048,0,-527.673 0/1:72:60,10:60:2408:10:405:-15.3338,0,-195.395 0/1:91:76,14:76:3014:14:557:-23.2214,0,-244.12 dDocent_Contig_3889 39 . G A 631.182 . AB=0.358209;ABP=14.7103;AC=1;AF=0.166667;AN=6;AO=27;CIGAR=1X;DP=127;DPB=127;DPRA=3.46875;EPP=61.6401;EPPR=220.158;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=1061;QR=3900;RO=100;RPL=0;RPP=61.6401;RPPR=220.158;RPR=27;RUN=1;SAF=27;SAP=61.6401;SAR=0;SRF=100;SRP=220.158;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:67:43,24:43:1694:24:939:-64.6411,0,-132.523 0/0:16:16,0:16:623:0:0:0,-4.81648,-56.4033 0/0:44:41,3:41:1583:3:122:0,-1.87283,-131.345 dDocent_Contig_3890 57 . G A 244.21 . AB=0.21875;ABP=46.9826;AC=1;AF=0.166667;AN=6;AO=19;CIGAR=1X;DP=246;DPB=246;DPRA=4.625;EPP=44.2683;EPPR=495.935;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=692;QR=8538;RO=227;RPL=19;RPP=44.2683;RPPR=495.935;RPR=0;RUN=1;SAF=19;SAP=44.2683;SAR=0;SRF=227;SRP=495.935;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:158:153,5:153:5792:5:190:0,-30.0966,-503.734 0/0:24:24,0:24:930:0:0:0,-7.22472,-84.0154 0/1:64:50,14:50:1816:14:502:-26.2449,0,-144.438 dDocent_Contig_3891 26 . C G 566.58 . AB=0.152344;ABP=271.764;AC=1;AF=0.166667;AN=6;AO=42;CIGAR=1X;DP=431;DPB=431;DPRA=3.56604;EPP=94.2121;EPPR=847.713;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=59.8612;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=0.997429;PAO=0;PQA=0;PQR=0;PRO=0;QA=1622;QR=15328;RO=389;RPL=0;RPP=94.2121;RPPR=847.713;RPR=42;RUN=1;SAF=42;SAP=94.2121;SAR=0;SRF=389;SRP=847.713;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:256:217,39:217:8575:39:1500:-58.1809,0,-694.265 0/0:53:53,0:53:2083:0:0:0,-15.9546,-187.674 0/0:122:119,3:119:4670:3:122:0,-25.3532,-405.825 dDocent_Contig_3892 15 . A G 691.04 . AB=0.231884;ABP=89.1768;AC=3;AF=0.5;AN=6;AO=32;CIGAR=1X;DP=138;DPB=138;DPRA=0;EPP=72.4974;EPPR=233.186;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=1279;QR=4275;RO=106;RPL=0;RPP=72.4974;RPPR=233.186;RPR=32;RUN=1;SAF=32;SAP=72.4974;SAR=0;SRF=106;SRP=233.186;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:78:62,16:62:2508:16:644:-34.8141,0,-202.369 0/1:19:13,6:13:520:6:231:-15.4355,0,-41.4254 0/1:41:31,10:31:1247:10:404:-24.3773,0,-100.156 dDocent_Contig_3893 84 . G T 62.4104 . AB=0.126761;ABP=88.9211;AC=1;AF=0.166667;AN=6;AO=14;CIGAR=1X2M1D5M;DP=314;DPB=312.444;DPRA=0;EPP=33.4109;EPPR=647.938;GTI=0;LEN=1;MEANALT=2;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=0.989899;PAO=0;PQA=0;PQR=0;PRO=0;QA=497;QR=10149;RO=297;RPL=14;RPP=33.4109;RPPR=647.938;RPR=0;RUN=1;SAF=14;SAP=33.4109;SAR=0;SRF=297;SRP=647.938;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|0:179:174,4:174:5980:4:143:0,-40.5774,-525.161 0|1:71:60,9:60:2050:9:319:-8.06495,0,-163.812 0|0:64:63,1:63:2119:1:35:0,-15.7673,-187.486 dDocent_Contig_3894 8 . T G 215.846 . AB=0.22449;ABP=35.3165;AC=1;AF=0.166667;AN=6;AO=13;CIGAR=1X2M1X;DP=103;DPB=103;DPRA=2.21053;EPP=31.2394;EPPR=189.757;GTI=0;LEN=1;MEANALT=2;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=486;QR=3263;RO=86;RPL=0;RPP=31.2394;RPPR=189.757;RPR=13;RUN=1;SAF=13;SAP=31.2394;SAR=0;SRF=86;SRP=189.757;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|1:49:35,11:35:1313:11:411:-23.1075,0,-104.224 0|0:19:18,0:18:695:0:0:0,-5.41854,-62.5233 0|0:35:33,2:33:1255:2:75:0,-3.41595,-106.12 dDocent_Contig_3895 29 . T C 3418.92 . AB=0.732394;ABP=36.3164;AC=4;AF=0.666667;AN=6;AO=107;CIGAR=1X;DP=129;DPB=129;DPRA=0;EPP=235.358;EPPR=50.7827;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=6.93889e-18;PAIRED=1;PAIREDR=0.954545;PAO=0;PQA=0;PQR=0;PRO=0;QA=4181;QR=830;RO=22;RPL=0;RPP=235.358;RPPR=50.7827;RPR=107;RUN=1;SAF=107;SAP=235.358;SAR=0;SRF=22;SRP=50.7827;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 1/1:58:3,55:3:110:55:2130:-181.623,-7.20154,0 0/1:33:8,25:8:303:25:999:-80.2734,0,-17.6919 0/1:38:11,27:11:417:27:1052:-83.5183,0,-26.4361 dDocent_Contig_3896 107 . N A 191.511 . AB=0;ABP=0;AC=2;AF=1;AN=2;AO=6;CIGAR=1X;DP=6;DPB=6;DPRA=0;EPP=16.0391;EPPR=0;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=0;NS=1;NUMALT=1;ODDS=8.76405;PAIRED=1;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=209;QR=0;RO=0;RPL=0;RPP=16.0391;RPPR=0;RPR=6;RUN=1;SAF=0;SAP=16.0391;SAR=6;SRF=0;SRP=0;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL ./.:.:.:.:.:.:.:. ./.:.:.:.:.:.:.:. 1/1:6:0,6:0:0:6:209:-19.1511,-1.80618,0 dDocent_Contig_3899 98 . N T 97.967 . AB=0;ABP=0;AC=2;AF=1;AN=2;AO=3;CIGAR=1X;DP=3;DPB=3;DPRA=0;EPP=9.52472;EPPR=0;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=0;NS=1;NUMALT=1;ODDS=6.68461;PAIRED=1;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=105;QR=0;RO=0;RPL=3;RPP=9.52472;RPPR=0;RPR=0;RUN=1;SAF=3;SAP=9.52472;SAR=0;SRF=0;SRP=0;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL ./.:.:.:.:.:.:.:. ./.:.:.:.:.:.:.:. 1/1:3:0,3:0:0:3:105:-9.79616,-0.90309,0 dDocent_Contig_3901 11 . T C 4026.35 . AB=0.710383;ABP=73.3636;AC=3;AF=0.5;AN=6;AO=130;CIGAR=1X;DP=183;DPB=183;DPRA=0;EPP=285.302;EPPR=118.098;GTI=0;LEN=1;MEANALT=1;MQM=57.9462;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=5148;QR=2050;RO=53;RPL=0;RPP=285.302;RPPR=118.098;RPR=130;RUN=1;SAF=130;SAP=285.302;SAR=0;SRF=53;SRP=118.098;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:102:36,66:36:1407:66:2623:-204.973,0,-96.1855 0/1:48:5,43:5:192:43:1687:-137.553,0,-3.19782 0/1:33:12,21:12:451:21:838:-65.6226,0,-30.9946 dDocent_Contig_3902 8 . C T 890.78 . AB=0.1875;ABP=233.729;AC=3;AF=0.5;AN=6;AO=51;CIGAR=1X;DP=272;DPB=272;DPRA=0;EPP=113.755;EPPR=482.906;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=1950;QR=8526;RO=221;RPL=0;RPP=113.755;RPPR=482.906;RPR=51;RUN=1;SAF=51;SAP=113.755;SAR=0;SRF=221;SRP=482.906;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:162:134,28:134:5169:28:1080:-48.7378,0,-416.44 0/1:40:35,5:35:1343:5:176:-4.13989,0,-109.114 0/1:70:52,18:52:2014:18:694:-41.7222,0,-160.422 dDocent_Contig_3903 45 . T A 2512.76 . AB=0.717949;ABP=51.2838;AC=3;AF=0.5;AN=6;AO=84;CIGAR=1X;DP=117;DPB=117;DPRA=0;EPP=185.414;EPPR=66.2462;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=3235;QR=1234;RO=33;RPL=0;RPP=185.414;RPPR=66.2462;RPR=84;RUN=1;SAF=84;SAP=185.414;SAR=0;SRF=33;SRP=74.6689;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:71:15,56:15:545:56:2167:-173.848,0,-28.0076 0/1:15:2,13:2:79:13:500:-40.8166,0,-2.98218 0/1:31:16,15:16:610:15:568:-42.119,0,-45.9057 dDocent_Contig_3904 10 . T G 17393.5 . AB=0.114625;ABP=655.739;AC=2;AF=0.333333;AN=6;AO=66;CIGAR=2X4M;DP=687;DPB=687;DPRA=0;EPP=146.327;EPPR=72.4974;GTI=0;LEN=1;MEANALT=8;MQM=42.4242;MQMR=60;NS=3;NUMALT=3;ODDS=0;PAIRED=0.0151515;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=2289;QR=1256;RO=32;RPL=0;RPP=146.327;RPPR=72.4974;RPR=66;RUN=1;SAF=66;SAP=146.327;SAR=0;SRF=32;SRP=72.4974;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 1|0:287:14,2,32,210:14:543:2,32,210:81,1136,8300:-713.846,-711.381,-755.39,-629.716,-667.648,-664.694,-43.7511,-81.7004,0,-25.1663 1|0:219:7,11,26,160:7:279:11,26,160:430,898,6155:-544.482,-511.237,-530.903,-476.45,-464.076,-491.6,-47.142,-34.7658,0,-21.9584 0|0:181:11,0,8,150:11:434:0,8,150:0,255,5886:-484.547,-487.858,-523.568,-468.242,-503.951,-501.543,-9.4195,-45.1545,-25.5488,0 dDocent_Contig_3905 29 . T C 3192.1 . AB=0.772727;ABP=88.2899;AC=3;AF=0.5;AN=6;AO=102;CIGAR=1X;DP=132;DPB=132;DPRA=0;EPP=224.5;EPPR=68.1545;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=4041;QR=1173;RO=30;RPL=0;RPP=224.5;RPPR=68.1545;RPR=102;RUN=1;SAF=102;SAP=224.5;SAR=0;SRF=30;SRP=68.1545;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:69:12,57:12:470:57:2270:-183.698,0,-21.8789 0/1:18:5,13:5:195:13:507:-40.5536,0,-12.5048 0/1:45:13,32:13:508:32:1264:-100.481,0,-32.5134 dDocent_Contig_3906 29 . T C 117.777 . AB=0.116279;ABP=58.0041;AC=1;AF=0.166667;AN=6;AO=5;CIGAR=1M1D4M1X5M;DP=51;DPB=50.0833;DPRA=0;EPP=13.8677;EPPR=89.8692;GTI=0;LEN=1;MEANALT=1.5;MQM=60;MQMR=60;NS=3;NUMALT=2;ODDS=0;PAIRED=0;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=185;QR=1574;RO=40;RPL=0;RPP=13.8677;RPPR=89.8692;RPR=5;RUN=1;SAF=5;SAP=13.8677;SAR=0;SRF=40;SRP=89.8692;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|1:27:24,3,0:24:949:3,0:113,0:-2.40998,0,-77.5881,-9.6347,-78.4912,-87.7475 0|0:16:10,2,4:10:389:2,4:72,153:-9.56005,-6.70331,-38.073,0,-26.1214,-30.787 0|0:8:6,0,2:6:236:0,2:0,81:-5.27749,-7.08367,-26.4885,0,-19.8065,-19.2044 dDocent_Contig_3908 8 . T C 123.167 . AB=0.233333;ABP=21.5402;AC=2;AF=0.333333;AN=6;AO=12;CIGAR=1X;DP=100;DPB=100;DPRA=0;EPP=29.068;EPPR=194.1;GTI=0;LEN=1;MEANALT=1;MQM=58.5;MQMR=60;NS=3;NUMALT=1;ODDS=6.93889e-18;PAIRED=0.833333;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=462;QR=3407;RO=88;RPL=0;RPP=29.068;RPPR=194.1;RPR=12;RUN=1;SAF=12;SAP=29.068;SAR=0;SRF=88;SRP=194.1;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:70:65,5:65:2518:5:194:0,-3.24601,-208.989 0/1:14:9,5:9:346:5:190:-13.2167,0,-27.2848 0/1:16:14,2:14:543:2:78:-2.58699,0,-44.3997 dDocent_Contig_3909 35 . T C 6934.98 . AB=0.61186;ABP=43.3318;AC=3;AF=0.5;AN=6;AO=227;CIGAR=2X;DP=371;DPB=371;DPRA=0;EPP=495.935;EPPR=300.502;GTI=0;LEN=1;MEANALT=1.66667;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=2.77556e-17;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=8990;QR=5433;RO=137;RPL=0;RPP=495.935;RPPR=300.502;RPR=227;RUN=1;SAF=227;SAP=495.935;SAR=0;SRF=137;SRP=300.502;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|1:241:99,138:99:3921:138:5484:-421.671,0,-281.162 0|1:50:25,25:25:1004:25:980:-73.4474,0,-75.6069 0|1:80:13,64:13:508:64:2526:-203.903,0,-22.4849 dDocent_Contig_3910 7 . G A 2824.72 . AB=0.203297;ABP=420.506;AC=3;AF=0.5;AN=6;AO=111;CIGAR=1X3M;DP=546;DPB=546;DPRA=0;EPP=244.044;EPPR=432.962;GTI=0;LEN=1;MEANALT=12;MQM=59.0991;MQMR=59.4141;NS=3;NUMALT=4;ODDS=0;PAIRED=0.972973;PAIREDR=0.893939;PAO=0;PQA=0;PQR=0;PRO=0;QA=4239;QR=6752;RO=198;RPL=0;RPP=244.044;RPPR=432.962;RPR=111;RUN=1;SAF=111;SAP=244.044;SAR=0;SRF=198;SRP=432.962;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|1:205:55,28,46,1,48:55:1800:28,46,1,48:1072,1739,38,1822:-132.726,-67.8079,-204.262,-6.73245,-70.1383,-137.77,-146.166,-209.574,-148.5,-290.75,0,-63.4059,-2.32735,-141.768,-130.435 0|1:156:83,6,15,9,20:83:2908:6,15,9,20:224,576,326,768:-38.0489,-45.9946,-280.747,-15.7607,-235.283,-247.808,-36.4217,-255.941,-225.711,-270.272,0,-219.525,-189.294,-209.953,-230.545 0|1:185:60,21,36,5,43:60:2044:21,36,5,43:805,1388,169,1649:-117.219,-74.7283,-234.181,-21.3203,-126.542,-176.26,-121.585,-226.807,-173.401,-285.857,0,-105.221,-51.8122,-152.081,-152.833 dDocent_Contig_3911 8 . T A 55.4761 . AB=0.210526;ABP=16.8392;AC=2;AF=0.333333;AN=6;AO=4;CIGAR=1M5I1M1X;DP=24;DPB=30.6667;DPRA=1.9;EPP=11.6962;EPPR=46.4397;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=0;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=144;QR=769;RO=20;RPL=0;RPP=11.6962;RPPR=46.4397;RPR=4;RUN=1;SAF=4;SAP=11.6962;SAR=0;SRF=20;SRP=46.4397;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|1:10:9,1:9:344:1:36:-0.587975,0,-28.3081 0|1:9:6,3:6:231:3:108:-7.3659,0,-18.4486 0|0:5:5,0:5:194:0:0:0,-1.50515,-17.8328 dDocent_Contig_3912 61 . A C 1427.06 . AB=0.398649;ABP=16.2152;AC=3;AF=0.5;AN=6;AO=59;CIGAR=1X;DP=148;DPB=148;DPRA=0;EPP=131.127;EPPR=196.271;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=2131;QR=3248;RO=89;RPL=59;RPP=131.127;RPPR=196.271;RPR=0;RUN=1;SAF=59;SAP=131.127;SAR=0;SRF=89;SRP=196.271;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:91:56,35:56:2060:35:1270:-87.2087,0,-158.26 0/1:20:14,6:14:521:6:225:-14.5899,0,-41.2086 0/1:37:19,18:19:667:18:636:-46.4298,0,-49.2168 dDocent_Contig_3913 127 . A T 36.0992 . AB=0.142857;ABP=18.5208;AC=3;AF=0.5;AN=6;AO=3;CIGAR=1X;DP=24;DPB=24;DPRA=0.833333;EPP=9.52472;EPPR=48.6112;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=59.619;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=93;QR=740;RO=21;RPL=0;RPP=9.52472;RPPR=48.6112;RPR=3;RUN=1;SAF=0;SAP=9.52472;SAR=3;SRF=0;SRP=48.6112;SRR=21;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:9:9,0:9:318:0:0:0,-2.70927,-28.9543 1/1:1:0,1:0:0:1:34:-3.39891,-0.30103,0 0/1:14:12,2:12:422:2:59:-1.38972,0,-34.1006 dDocent_Contig_3914 7 . A G 120.913 . AB=0.333333;ABP=5.18177;AC=2;AF=0.333334;AN=6;AO=3;CIGAR=1X1M1X4M;DP=95;DPB=95;DPRA=0;EPP=9.52472;EPPR=152.842;GTI=0;LEN=1;MEANALT=1;MQM=52;MQMR=60;NS=3;NUMALT=5;ODDS=0;PAIRED=0.666667;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=100;QR=2649;RO=69;RPL=0;RPP=9.52472;RPPR=152.842;RPR=3;RUN=1;SAF=3;SAP=9.52472;SAR=0;SRF=69;SRP=152.842;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|0:55:44,2,0,0,2,6:44:1686:2,0,0,2,6:79,0,0,76,228:-5.45404,-12.1949,-149.97,-18.6994,-150.572,-157.074,-18.6994,-150.572,-157.074,-157.074,-12.4667,-144.34,-150.841,-150.841,-150.239,0,-131.874,-138.376,-138.376,-132.143,-136.57 0|1:9:6,0,0,3,0,0:6:231:0,0,3,0,0:0,0,100,0,0:-6.38562,-8.1918,-27.1988,-8.1918,-27.1988,-27.1988,0,-19.3517,-19.3517,-18.4486,-8.1918,-27.1988,-27.1988,-19.3517,-27.1988,-8.1918,-27.1988,-27.1988,-19.3517,-27.1988,-27.1988 0|1:31:19,4,4,0,2,2:19:732:4,4,0,2,2:141,152,0,80,78:-5.77442,0,-58.9569,-4.87296,-53.5133,-63.7829,-11.494,-60.161,-64.987,-71.6386,-4.88829,-53.5679,-58.3954,-65.0458,-64.4437,-5.06868,-53.7471,-58.5746,-65.2248,-58.6316,-64.6228 dDocent_Contig_3915 9 . G A 4522.2 . AB=0.200893;ABP=177.077;AC=2;AF=0.333333;AN=6;AO=45;CIGAR=1X2M1X;DP=224;DPB=227;DPRA=0;EPP=100.727;EPPR=87.6977;GTI=0;LEN=1;MEANALT=2.66667;MQM=60;MQMR=60;NS=3;NUMALT=3;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=1754;QR=1495;RO=39;RPL=0;RPP=100.727;RPPR=87.6977;RPR=45;RUN=1;SAF=45;SAP=100.727;SAR=0;SRF=39;SRP=87.6977;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 1|0:123:22,27,0,74:22:842:27,0,74:1047,0,2957:-253.855,-174.468,-235.433,-260.478,-243.56,-329.571,-16.9214,0,-86.0155,-63.7393 0|0:56:12,10,0,33:12:455:10,0,33:391,0,1305:-103.78,-75.2459,-109.538,-107.393,-112.549,-144.696,0,-5.14803,-37.2999,-27.3659 1|0:45:5,8,4,28:5:198:8,4,28:316,153,1116:-100.108,-75.61,-89.4985,-89.06,-79.3536,-104.153,-9.70767,0,-13.4541,-17.5772 dDocent_Contig_3916 98 . N T 64.5902 . AB=0;ABP=0;AC=2;AF=1;AN=2;AO=2;CIGAR=1X;DP=2;DPB=2;DPRA=0;EPP=7.35324;EPPR=0;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=0;NS=1;NUMALT=1;ODDS=5.99146;PAIRED=1;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=68;QR=0;RO=0;RPL=2;RPP=7.35324;RPPR=0;RPR=0;RUN=1;SAF=2;SAP=7.35324;SAR=0;SRF=0;SRP=0;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 1/1:2:0,2:0:0:2:68:-6.45793,-0.60206,0 ./.:.:.:.:.:.:.:. ./.:.:.:.:.:.:.:. dDocent_Contig_3917 39 . G A 94.1119 . AB=0.227273;ABP=17.2236;AC=1;AF=0.166667;AN=6;AO=6;CIGAR=1X;DP=55;DPB=55;DPRA=1.02778;EPP=16.0391;EPPR=109.412;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=232;QR=1976;RO=49;RPL=0;RPP=16.0391;RPPR=109.412;RPR=6;RUN=1;SAF=6;SAP=16.0391;SAR=0;SRF=49;SRP=109.412;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:22:17,5:17:681:5:191:-10.9335,0,-54.9965 0/0:18:18,0:18:724:0:0:0,-5.41854,-65.4821 0/0:15:14,1:14:571:1:41:0,-0.420883,-47.6373 dDocent_Contig_3918 7 . A T 1334.56 . AB=0.657143;ABP=18.0245;AC=3;AF=0.5;AN=6;AO=46;CIGAR=1X;DP=70;DPB=70;DPRA=0;EPP=102.898;EPPR=55.1256;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=1767;QR=916;RO=24;RPL=0;RPP=102.898;RPPR=55.1256;RPR=46;RUN=1;SAF=46;SAP=102.898;SAR=0;SRF=24;SRP=55.1256;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:40:11,29:11:426:29:1121:-89.1513,0,-26.6536 0/1:20:8,12:8:298:12:453:-35.0969,0,-21.1528 0/1:10:5,5:5:192:5:193:-14.7311,0,-14.6397 dDocent_Contig_3919 13 . T C 3031.25 . AB=0.153846;ABP=246.549;AC=0;AF=0;AN=6;AO=36;CIGAR=1X2M2X1M1X;DP=234;DPB=234;DPRA=0;EPP=81.1833;EPPR=124.613;GTI=0;LEN=1;MEANALT=4;MQM=19;MQMR=60;NS=3;NUMALT=3;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=1417;QR=2195;RO=56;RPL=0;RPP=81.1833;RPPR=124.613;RPR=36;RUN=1;SAF=36;SAP=81.1833;SAR=0;SRF=56;SRP=124.613;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|0:133:31,16,50,34:31:1214:16,50,34:627,2007,1361:-168.271,-155.838,-250.839,-12.3002,-90.384,-97.0904,-65.4749,-143.544,0,-155.073 0|0:38:4,9,19,6:4:157:9,19,6:357,753,244:-68.0509,-52.3382,-62.5403,-7.23342,-3.28005,-14.4438,-49.1183,-45.1211,0,-60.23 0|0:63:21,11,24,6:21:824:11,24,6:433,955,246:-72.3265,-67.6066,-132.056,0,-56.8045,-60.6171,-58.3309,-115.062,-47.5221,-124.315 dDocent_Contig_3921 13 . T C 58.265 . AB=0.0887097;ABP=549.591;AC=1;AF=0.166667;AN=6;AO=45;CIGAR=1X;DP=625;DPB=625;DPRA=0;EPP=100.727;EPPR=1262.46;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=1806;QR=22820;RO=580;RPL=0;RPP=100.727;RPPR=1262.46;RPR=45;RUN=1;SAF=45;SAP=100.727;SAR=0;SRF=580;SRP=1262.46;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:372:339,33:339:13361:33:1323:-7.34938,0,-1089.68 0/0:97:92,5:92:3575:5:199:0,-10.9113,-303.547 0/0:156:149,7:149:5884:7:284:0,-21.0273,-503.477 dDocent_Contig_3923 21 . C G 12974 . AB=0.0526316;ABP=168.156;AC=0;AF=0;AN=6;AO=9;CIGAR=1X3M1X;DP=413;DPB=428.6;DPRA=0.483333;EPP=22.5536;EPPR=33.4109;GTI=0;LEN=1;MEANALT=5;MQM=60;MQMR=60;NS=3;NUMALT=3;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=358;QR=566;RO=14;RPL=0;RPP=22.5536;RPPR=33.4109;RPR=9;RUN=1;SAF=9;SAP=22.5536;SAR=0;SRF=14;SRP=33.4109;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|0:210:6,0,0,204:6:243:0,0,204:0,0,8131:-709.085,-710.892,-730.929,-710.892,-730.929,-730.929,-40.9681,-61.4101,-61.4101,0 0|0:108:1,4,2,94:1:41:4,2,94:159,80,3762:-334.513,-321.723,-323.903,-328.224,-318.517,-331.006,-24.9118,-15.2056,-21.7062,0 0|0:95:7,5,5,77:7:282:5,5,77:199,191,3100:-253.393,-239.114,-260.853,-239.832,-246.689,-261.57,0,-6.86083,-7.58321,-0.0686645 dDocent_Contig_3926 65 . G A 61.5279 . AB=0.151515;ABP=37.8197;AC=2;AF=0.333334;AN=6;AO=5;CIGAR=2X3M;DP=74;DPB=74;DPRA=3;EPP=13.8677;EPPR=146.327;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=2;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=191;QR=2590;RO=66;RPL=5;RPP=13.8677;RPPR=146.327;RPR=0;RUN=1;SAF=5;SAP=13.8677;SAR=0;SRF=66;SRP=146.327;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|1:33:28,0,5:28:1103:0,5:0,191:-7.6214,-16.0502,-106.798,0,-91.1308,-89.6256 0|0:11:11,0,0:11:423:0,0:0,0:0,-3.31133,-38.4195,-3.31133,-38.4195,-38.4195 0|1:30:27,3,0:27:1064:3,0:114,0:-1.60132,0,-87.0272,-9.72913,-87.9303,-97.2783 dDocent_Contig_3927 28 . A T 3487.87 . AB=0.763514;ABP=92.2754;AC=3;AF=0.5;AN=6;AO=113;CIGAR=1X;DP=148;DPB=148;DPRA=0;EPP=248.387;EPPR=79.0118;GTI=0;LEN=1;MEANALT=1;MQM=55.7522;MQMR=60;NS=3;NUMALT=1;ODDS=6.93889e-18;PAIRED=0.300885;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=4451;QR=1374;RO=35;RPL=0;RPP=248.387;RPPR=79.0118;RPR=113;RUN=1;SAF=113;SAP=248.387;SAR=0;SRF=35;SRP=79.0118;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:105:24,81:24:946:81:3189:-253.804,0,-53.8389 0/1:17:2,15:2:79:15:594:-48.0464,0,-2.37973 0/1:26:9,17:9:349:17:668:-52.4026,0,-23.9428 dDocent_Contig_3928 31 . A T 122.443 . AB=0.6;ABP=3.44459;AC=3;AF=0.5;AN=6;AO=6;CIGAR=1X;DP=14;DPB=14;DPRA=0.666667;EPP=16.0391;EPPR=18.2106;GTI=0;LEN=1;MEANALT=1.5;MQM=45.3333;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=201;QR=281;RO=7;RPL=0;RPP=16.0391;RPPR=18.2106;RPR=6;RUN=1;SAF=0;SAP=16.0391;SAR=6;SRF=0;SRP=18.2106;SRR=7;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 1/1:3:0,3:0:0:3:89:-8.30408,-0.90309,0 0/1:5:1,3:1:40:3:112:-5.40723,0,-2.38705 0/0:6:6,0:6:241:0:0:0,-1.80618,-22.0667 dDocent_Contig_3929 86 . T G 351.815 . AB=0.380952;ABP=8.18047;AC=2;AF=0.333333;AN=6;AO=16;CIGAR=1X;DP=61;DPB=61;DPRA=1.10526;EPP=37.7539;EPPR=100.727;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=3.46945e-18;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=559;QR=1579;RO=45;RPL=16;RPP=37.7539;RPPR=100.727;RPR=0;RUN=1;SAF=16;SAP=37.7539;SAR=0;SRF=45;SRP=100.727;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:25:11,14:11:385:14:487:-36.6345,0,-27.4586 0/1:17:15,2:15:519:2:72:-1.71921,0,-41.9181 0/0:19:19,0:19:675:0:0:0,-5.71957,-61.0776 dDocent_Contig_3930 1 . N A 337.753 . AB=0;ABP=0;AC=6;AF=1;AN=6;AO=11;CIGAR=1X;DP=11;DPB=11;DPRA=0;EPP=26.8965;EPPR=0;GTI=0;LEN=1;MEANALT=1;MQM=49.0909;MQMR=0;NS=3;NUMALT=1;ODDS=1.69407e-21;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=374;QR=0;RO=0;RPL=0;RPP=26.8965;RPPR=0;RPR=11;RUN=1;SAF=0;SAP=26.8965;SAR=11;SRF=0;SRP=0;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 1/1:4:0,4:0:0:4:141:-11.6689,-1.20412,0 1/1:6:0,6:0:0:6:198:-18.1298,-1.80618,0 1/1:1:0,1:0:0:1:35:-3.49863,-0.30103,0 dDocent_Contig_3932 9 . G A 728.76 . AB=0.178404;ABP=194.355;AC=3;AF=0.5;AN=6;AO=38;CIGAR=1X1M;DP=213;DPB=213;DPRA=0;EPP=85.5263;EPPR=322.217;GTI=0;LEN=1;MEANALT=2;MQM=60;MQMR=60;NS=3;NUMALT=2;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=1432;QR=5688;RO=147;RPL=0;RPP=85.5263;RPPR=322.217;RPR=38;RUN=1;SAF=38;SAP=85.5263;SAR=0;SRF=147;SRP=322.217;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|1:113:74,20,19:74:2876:20,19:774,717:-41.3043,0,-230.315,-4.8226,-177.576,-235.431 0|1:34:26,4,4:26:998:4,4:153,148:-4.73456,0,-80.7223,-0.460334,-69.821,-81.1719 0|1:66:47,4,15:47:1814:4,15:159,567:-32.3124,-33.3656,-181.137,0,-135.867,-144.443 dDocent_Contig_3933 157 . A G 230.618 . AB=0.30303;ABP=14.1309;AC=2;AF=0.333333;AN=6;AO=10;CIGAR=1X;DP=48;DPB=48;DPRA=1.1;EPP=24.725;EPPR=85.5263;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=395;QR=1482;RO=38;RPL=0;RPP=24.725;RPPR=85.5263;RPR=10;RUN=1;SAF=0;SAP=24.725;SAR=10;SRF=0;SRP=85.5263;SRR=38;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:26:17,9:17:670:9:355:-24.485,0,-52.8079 0/1:7:6,1:6:234:1:40:-1.88847,0,-19.3222 0/0:15:15,0:15:578:0:0:0,-4.51545,-52.3584 dDocent_Contig_3934 30 . T C 32667.9 . AB=0;ABP=0;AC=6;AF=1;AN=6;AO=938;CIGAR=2X;DP=993;DPB=993;DPRA=0;EPP=2039.85;EPPR=44.2683;GTI=0;LEN=1;MEANALT=2.33333;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=0.995736;PAIREDR=0.947368;PAO=0;PQA=0;PQR=0;PRO=0;QA=37053;QR=722;RO=19;RPL=0;RPP=2039.85;RPPR=44.2683;RPR=938;RUN=1;SAF=938;SAP=2039.85;SAR=0;SRF=19;SRP=44.2683;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 1|1:466:7,441:7:269:441:17444:-1544.08,-110.678,0 1|1:202:9,188:9:333:188:7415:-636.725,-29.3577,0 1|1:325:3,309:3:120:309:12194:-1085.51,-83.1331,0 dDocent_Contig_3936 16 . A C 3052.66 . AB=0.0913978;ABP=272.74;AC=0;AF=0;AN=6;AO=17;CIGAR=1X4M1X3M;DP=186;DPB=186;DPRA=0;EPP=39.9253;EPPR=72.4974;GTI=0;LEN=1;MEANALT=5;MQM=60;MQMR=60;NS=3;NUMALT=5;ODDS=5.55112e-17;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=618;QR=1257;RO=32;RPL=0;RPP=39.9253;RPPR=72.4974;RPR=17;RUN=1;SAF=17;SAP=39.9253;SAR=0;SRF=32;SRP=72.4974;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|0:81:10,8,2,8,6,46:10:392:8,2,8,6,46:310,72,311,210,1826:-147.31,-124.855,-154.682,-144.446,-151.217,-176.08,-124.763,-131.534,-151.125,-154.591,-133.25,-140.02,-159.612,-139.929,-163.679,0,-6.77243,-26.3667,-6.68054,-15.1726,-18.3925 0|0:36:7,5,2,0,4,18:7:275:5,2,0,4,18:188,78,0,150,720:-57.2153,-43.9237,-65.0374,-52.9115,-60.1318,-74.929,-59.3225,-66.5426,-75.5311,-81.9421,-47.041,-54.2613,-63.2492,-69.66,-68.4559,0,-7.22604,-16.2132,-22.6251,-10.3435,-17.2065 0|0:69:15,7,3,0,7,34:15:590:7,3,0,7,34:279,115,0,258,1346:-106.264,-87.8027,-134.229,-101.342,-126.899,-148.972,-110.78,-136.336,-149.875,-159.313,-89.6899,-115.246,-128.785,-138.222,-136.115,0,-25.5581,-39.099,-48.5364,-27.4483,-38.3013 dDocent_Contig_3937 40 . T C 265.388 . AB=0.120968;ABP=312.48;AC=3;AF=0.5;AN=6;AO=30;CIGAR=1X;DP=248;DPB=248;DPRA=0;EPP=68.1545;EPPR=476.391;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=1174;QR=8630;RO=218;RPL=0;RPP=68.1545;RPPR=476.391;RPR=30;RUN=1;SAF=30;SAP=68.1545;SAR=0;SRF=218;SRP=476.391;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:138:122,16:122:4865:16:641:-16.4835,0,-396.215 0/1:38:33,5:33:1325:5:194:-6.39137,0,-108.075 0/1:72:63,9:63:2440:9:339:-9.18679,0,-198.085 dDocent_Contig_3938 80 . C T 350.805 . AB=0.368421;ABP=8.7247;AC=1;AF=0.166667;AN=6;AO=15;CIGAR=2X;DP=68;DPB=68;DPRA=2.33333;EPP=35.5824;EPPR=118.098;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=0.933333;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=566;QR=1992;RO=53;RPL=15;RPP=35.5824;RPPR=118.098;RPR=0;RUN=1;SAF=15;SAP=35.5824;SAR=0;SRF=53;SRP=118.098;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|1:38:24,14:24:917:14:530:-36.6033,0,-71.4098 0|0:12:12,0:12:459:0:0:0,-3.61236,-41.6599 0|0:18:17,1:17:616:1:36:0,-1.82026,-52.1747 dDocent_Contig_3939 28 . G T 40.3758 . AB=0.166667;ABP=20.3821;AC=1;AF=0.166667;AN=6;AO=3;CIGAR=1X;DP=130;DPB=130;DPRA=0.321429;EPP=9.52472;EPPR=278.787;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=121;QR=5046;RO=127;RPL=0;RPP=9.52472;RPPR=278.787;RPR=3;RUN=1;SAF=3;SAP=9.52472;SAR=0;SRF=127;SRP=278.787;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:83:83,0:83:3319:0:0:0,-24.9855,-298.761 0/0:29:29,0:29:1128:0:0:0,-8.72987,-101.802 0/1:18:15,3:15:599:3:121:-5.86145,0,-48.8275 dDocent_Contig_3941 98 . N T 85.6735 . AB=0;ABP=0;AC=2;AF=1;AN=2;AO=4;CIGAR=2X;DP=4;DPB=5;DPRA=0;EPP=11.6962;EPPR=0;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=0;NS=1;NUMALT=1;ODDS=7.37776;PAIRED=1;PAIREDR=0;PAO=1;PQA=10;PQR=0;PRO=0;QA=94;QR=0;RO=0;RPL=4;RPP=11.6962;RPPR=0;RPR=0;RUN=1;SAF=4;SAP=11.6962;SAR=0;SRF=0;SRP=0;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 1|1:4:0,4:0:0:4:94:-8.56708,-1.20412,0 .:.:.:.:.:.:.:. .:.:.:.:.:.:.:. dDocent_Contig_3942 70 . G A 6368.88 . AB=0;ABP=0;AC=6;AF=1;AN=6;AO=228;CIGAR=1X1M1X;DP=248;DPB=248;DPRA=0;EPP=498.106;EPPR=44.2683;GTI=0;LEN=1;MEANALT=1.33333;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=7681;QR=608;RO=19;RPL=228;RPP=498.106;RPPR=44.2683;RPR=0;RUN=1;SAF=228;SAP=498.106;SAR=0;SRF=19;SRP=44.2683;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 1|1:106:9,97:9:290:97:3247:-266.052,-5.49383,0 1|1:74:4,69:4:128:69:2366:-201.373,-10.4258,0 1|1:68:6,62:6:190:62:2068:-168.986,-3.05718,0 dDocent_Contig_3943 30 . T C 8120.74 . AB=0.719626;ABP=137.5;AC=4;AF=0.666667;AN=6;AO=254;CIGAR=1X;DP=345;DPB=345;DPRA=0;EPP=554.564;EPPR=200.614;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=10180;QR=3500;RO=91;RPL=0;RPP=554.564;RPPR=200.614;RPR=254;RUN=1;SAF=254;SAP=554.564;SAR=0;SRF=91;SRP=200.614;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:261:82,179:82:3140:179:7166:-566.009,0,-204.15 1/1:24:1,23:1:41:23:922:-79.1908,-3.13015,0 0/1:60:8,52:8:319:52:2092:-170.398,0,-11.0147 dDocent_Contig_3944 21 . A G 325.74 . AB=0.157895;ABP=138.213;AC=2;AF=0.333333;AN=6;AO=22;CIGAR=1X;DP=154;DPB=154;DPRA=0;EPP=50.7827;EPPR=289.645;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=873;QR=5253;RO=132;RPL=0;RPP=50.7827;RPPR=289.645;RPR=22;RUN=1;SAF=22;SAP=50.7827;SAR=0;SRF=132;SRP=289.645;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:96:80,16:80:3182:16:637:-28.7641,0,-257.553 0/0:21:20,1:20:786:1:35:0,-2.823,-67.5574 0/1:37:32,5:32:1285:5:201:-7.33278,0,-104.78 dDocent_Contig_3945 160 . C G 388.271 . AB=0.271186;ABP=29.8409;AC=1;AF=0.166667;AN=6;AO=18;CIGAR=1X;DP=110;DPB=110;DPRA=2;EPP=42.0968;EPPR=200.614;GTI=0;LEN=1;MEANALT=1.5;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=0.888889;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=714;QR=3528;RO=91;RPL=18;RPP=42.0968;RPPR=200.614;RPR=0;RUN=1;SAF=0;SAP=42.0968;SAR=18;SRF=0;SRP=200.614;SRR=91;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:59:43,16:43:1628:16:642:-40.35,0,-128.996 0/0:22:22,0:22:850:0:0:0,-6.62266,-76.8115 0/0:29:26,2:26:1050:2:72:0,-1.93582,-87.9637 dDocent_Contig_3946 69 . T G 303.294 . AB=0.461538;ABP=3.34437;AC=2;AF=0.333333;AN=6;AO=12;CIGAR=1X;DP=32;DPB=32;DPRA=2.16667;EPP=29.068;EPPR=46.4397;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=450;QR=742;RO=20;RPL=12;RPP=29.068;RPPR=46.4397;RPR=0;RUN=1;SAF=12;SAP=29.068;SAR=0;SRF=20;SRP=46.4397;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:19:8,11:8:307:11:413:-31.7993,0,-22.2722 0/0:6:6,0:6:214:0:0:0,-1.80618,-19.6067 0/1:7:6,1:6:221:1:37:-1.59062,0,-18.1396 dDocent_Contig_3947 11 . C A 939.79 . AB=0.0630631;ABP=187.077;AC=0;AF=0;AN=6;AO=7;CIGAR=2X;DP=155;DPB=155;DPRA=0;EPP=18.2106;EPPR=226.672;GTI=0;LEN=1;MEANALT=3.5;MQM=60;MQMR=60;NS=3;NUMALT=2;ODDS=0;PAIRED=1;PAIREDR=0.92233;PAO=0;PQA=0;PQR=0;PRO=0;QA=270;QR=4075;RO=103;RPL=0;RPP=18.2106;RPPR=226.672;RPR=7;RUN=1;SAF=7;SAP=18.2106;SAR=0;SRF=103;SRP=226.672;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|0:66:48,1,13:48:1910:1,13:41,522:-28.5699,-39.6346,-196.586,0,-153.874,-153.345 0|0:44:29,0,14:29:1137:0,14:0,536:-35.2843,-44.0142,-137.512,0,-93.5333,-89.3189 0|0:45:26,6,13:26:1028:6,13:229,527:-35.6476,-24.696,-107.476,0,-65.8206,-80.6904 dDocent_Contig_3948 48 . T A 3608.73 . AB=0.440476;ABP=8.18047;AC=6;AF=1;AN=6;AO=74;CIGAR=2M1X5M;DP=168;DPB=177;DPRA=0;EPP=163.699;EPPR=50.7827;GTI=0;LEN=1;MEANALT=3.33333;MQM=60;MQMR=60;NS=3;NUMALT=3;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=2932;QR=854;RO=22;RPL=74;RPP=163.699;RPPR=50.7827;RPR=0;RUN=1;SAF=74;SAP=163.699;SAR=0;SRF=22;SRP=50.7827;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 1|1:91:8,34,0,48:8:317:34,0,48:1352,0,1899:-239.104,-130.197,-146.055,-241.512,-156.29,-267.605,-85.2393,0,-111.333,-96.8833 1|1:24:4,12,0,8:4:150:12,0,8:470,0,308:-50.4576,-13.0104,-21.6814,-51.6617,-25.2937,-63.9459,-26.3772,0,-38.6597,-36.2514 1|1:53:10,16,7,18:10:387:16,7,18:630,189,725:-76.8348,-28.0034,-54.9807,-66.8603,-46.8158,-96.5359,-20.0626,0,-38.8788,-46.4413 dDocent_Contig_3949 9 . G A 631.409 . AB=0.0409091;ABP=405.759;AC=0;AF=0;AN=6;AO=9;CIGAR=2X4M;DP=220;DPB=220;DPRA=0;EPP=22.5536;EPPR=291.816;GTI=0;LEN=1;MEANALT=4.66667;MQM=60;MQMR=60;NS=3;NUMALT=5;ODDS=0;PAIRED=1;PAIREDR=0.992481;PAO=0;PQA=0;PQR=0;PRO=0;QA=350;QR=5133;RO=133;RPL=0;RPP=22.5536;RPPR=291.816;RPR=9;RUN=1;SAF=9;SAP=22.5536;SAR=0;SRF=133;SRP=291.816;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|0:68:39,6,7,14,2,0:39:1511:6,7,14,2,0:176,268,477,79,0:-26.1402,-24.5207,-146.864,-16.7314,-127.532,-138.79,0,-110.799,-103.024,-119.947,-31.3751,-142.168,-134.395,-117.66,-154.932,-37.8804,-148.67,-140.897,-124.162,-155.534,-162.036 0|0:82:53,7,8,2,5,7:53:2052:7,8,2,5,7:166,304,60,191,279:-8.06594,-12.3678,-178.831,0,-156.931,-166.197,-19.4985,-176.415,-164.082,-187.488,-8.33913,-165.266,-152.933,-172.418,-175.436,-1.02798,-157.964,-145.63,-165.115,-153.966,-167.531 0|0:70:41,6,15,5,2,0:41:1570:6,15,5,2,0:144,596,189,80,0:-34.4442,-36.8192,-163.846,0,-118.9,-124.368,-31.2961,-150.168,-113.398,-158.649,-40.1925,-159.061,-122.292,-153.563,-168.446,-46.7864,-165.652,-128.883,-160.154,-169.048,-175.639 dDocent_Contig_3950 13 . T A 28678.2 . AB=0.694444;ABP=357.684;AC=3;AF=0.5;AN=6;AO=750;CIGAR=1M2X;DP=1080;DPB=1080;DPRA=0;EPP=1614.29;EPPR=48.6112;GTI=0;LEN=1;MEANALT=6.33333;MQM=56.3173;MQMR=60;NS=3;NUMALT=3;ODDS=0;PAIRED=0.810667;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=29828;QR=808;RO=21;RPL=0;RPP=1631.61;RPPR=48.6112;RPR=750;RUN=1;SAF=748;SAP=1614.29;SAR=2;SRF=21;SRP=48.6112;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 1|0:573:13,62,404,63:13:498:62,404,63:2464,16095,2512:-1461.46,-1271.73,-1293.93,-165.994,-13.2177,-85.2374,-1258.52,-1105.74,0,-1280.42 1|0:232:1,9,160,43:1:40:9,160,43:364,6308,1722:-644.558,-614.847,-615.433,-138.569,-111.852,-93.6996,-502.996,-476.279,0,-493.347 1|0:275:7,14,186,59:7:270:14,186,59:561,7425,2377:-767.329,-732.516,-750.467,-173.52,-158.773,-139.695,-573.785,-559.031,0,-578.19 dDocent_Contig_3951 44 . T G 3939.54 . AB=0.601852;ABP=22.4731;AC=3;AF=0.5;AN=6;AO=130;CIGAR=1X3M;DP=216;DPB=216;DPRA=0;EPP=285.302;EPPR=176.728;GTI=0;LEN=1;MEANALT=1.33333;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=1.38778e-17;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=5138;QR=3159;RO=80;RPL=0;RPP=285.302;RPPR=176.728;RPR=130;RUN=1;SAF=130;SAP=285.302;SAR=0;SRF=80;SRP=176.728;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|1:121:50,65:50:1980:65:2559:-195.435,0,-143.394 0|1:30:14,16:14:552:16:630:-48.0018,0,-40.9935 0|1:65:16,49:16:627:49:1949:-156.04,0,-37.1956 dDocent_Contig_3952 11 . T C 22736.4 . AB=0.903226;ABP=178.129;AC=5;AF=0.833333;AN=6;AO=664;CIGAR=1X;DP=687;DPB=687;DPRA=0;EPP=1444.87;EPPR=52.9542;GTI=0;LEN=1;MEANALT=1;MQM=56.25;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=26240;QR=856;RO=23;RPL=0;RPP=1444.87;RPPR=52.9542;RPR=664;RUN=1;SAF=664;SAP=1444.87;SAR=0;SRF=23;SRP=52.9542;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 1/1:386:9,377:9:341:377:14912:-1305.62,-85.1509,0 0/1:124:12,112:12:447:112:4392:-354.56,0,-3.24499 1/1:177:2,175:2:68:175:6936:-614.972,-46.8249,0 dDocent_Contig_3953 19 . C A 135.571 . AB=0.285714;ABP=11.386;AC=1;AF=0.166667;AN=6;AO=6;CIGAR=1X2M7D1M;DP=68;DPB=64.1818;DPRA=0.893617;EPP=16.0391;EPPR=135.47;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=1.73472e-18;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=237;QR=2322;RO=61;RPL=0;RPP=16.0391;RPPR=135.47;RPR=6;RUN=1;SAF=6;SAP=16.0391;SAR=0;SRF=61;SRP=135.47;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|0:23:22,0:22:833:0:0:0,-6.62266,-74.8876 0|1:21:15,6:15:565:6:237:-15.381,0,-44.8664 0|0:24:24,0:24:924:0:0:0,-7.22472,-83.4707 dDocent_Contig_3954 49 . G C 9751.58 . AB=0.905405;ABP=108.649;AC=5;AF=0.833333;AN=6;AO=302;CIGAR=1X;DP=324;DPB=324;DPRA=0;EPP=658.795;EPPR=50.7827;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=1.38778e-17;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=11660;QR=829;RO=22;RPL=0;RPP=658.795;RPPR=50.7827;RPR=302;RUN=1;SAF=302;SAP=658.795;SAR=0;SRF=22;SRP=50.7827;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 1/1:181:15,166:15:559:166:6390:-524.261,-3.84925,0 0/1:74:7,67:7:270:67:2605:-212.33,0,-2.38775 1/1:69:0,69:0:0:69:2665:-239.985,-20.7711,0 dDocent_Contig_3955 20 . C A 669.17 . AB=0.196721;ABP=149.211;AC=3;AF=0.5;AN=6;AO=36;CIGAR=1X1M1X;DP=183;DPB=183;DPRA=0;EPP=72.7387;EPPR=317.874;GTI=0;LEN=1;MEANALT=1.33333;MQM=59.8333;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=0.944444;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=1403;QR=5699;RO=145;RPL=0;RPP=81.1833;RPPR=317.874;RPR=36;RUN=1;SAF=35;SAP=72.7387;SAR=1;SRF=145;SRP=317.874;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|1:90:76,12:76:3000:12:477:-16.4073,0,-243.229 0|1:38:28,10:28:1075:10:385:-23.5579,0,-85.6019 0|1:55:41,14:41:1624:14:541:-32.4746,0,-129.837 dDocent_Contig_3956 48 . G A 67.6499 . AB=0.100629;ABP=223.285;AC=2;AF=0.333333;AN=6;AO=16;CIGAR=1X;DP=220;DPB=220;DPRA=1.30328;EPP=37.7539;EPPR=445.991;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=0;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=638;QR=8142;RO=204;RPL=0;RPP=37.7539;RPPR=445.991;RPR=16;RUN=1;SAF=16;SAP=37.7539;SAR=0;SRF=204;SRP=445.991;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:101:91,10:91:3623:10:404:-6.3164,0,-295.687 0/1:58:52,6:52:2083:6:234:-3.96992,0,-170.184 0/0:61:61,0:61:2436:0:0:0,-18.3628,-219.383 dDocent_Contig_3957 15 . G A 2901.92 . AB=0.766667;ABP=77.1299;AC=3;AF=0.5;AN=6;AO=92;CIGAR=1X;DP=120;DPB=120;DPRA=0;EPP=202.786;EPPR=63.8115;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=3678;QR=1114;RO=28;RPL=0;RPP=202.786;RPPR=63.8115;RPR=92;RUN=1;SAF=92;SAP=202.786;SAR=0;SRF=28;SRP=63.8115;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:73:13,60:13:510:60:2405:-194.625,0,-24.2699 0/1:16:9,7:9:362:7:280:-20.7551,0,-28.1277 0/1:31:6,25:6:242:25:993:-80.335,0,-12.8245 dDocent_Contig_3958 49 . G T 120.36 . AB=0.181818;ABP=41.702;AC=1;AF=0.166667;AN=6;AO=15;CIGAR=1X;DP=150;DPB=150;DPRA=0;EPP=35.5824;EPPR=270.68;GTI=0;LEN=1;MEANALT=1;MQM=54.8667;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=0.666667;PAIREDR=0.911111;PAO=0;PQA=0;PQR=0;PRO=0;QA=522;QR=5351;RO=135;RPL=15;RPP=35.5824;RPPR=270.68;RPR=0;RUN=1;SAF=15;SAP=35.5824;SAR=0;SRF=135;SRP=296.159;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:80:75,5:75:2962:5:159:0,-10.7644,-253.358 0/0:26:24,2:24:944:2:64:0,-1.74868,-79.1852 0/1:44:36,8:36:1445:8:299:-13.8599,0,-117.055 dDocent_Contig_3959 62 . G A 9616.81 . AB=0.854251;ABP=272.247;AC=6;AF=1;AN=6;AO=285;CIGAR=1X3M;DP=330;DPB=330;DPRA=0;EPP=621.88;EPPR=31.2394;GTI=0;LEN=1;MEANALT=2.66667;MQM=60;MQMR=60;NS=3;NUMALT=2;ODDS=2.77556e-17;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=11011;QR=491;RO=13;RPL=285;RPP=621.88;RPPR=31.2394;RPR=0;RUN=1;SAF=285;SAP=621.88;SAR=0;SRF=13;SRP=31.2394;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 1|1:191:7,21,160:7:256:21,160:798,6173:-549.304,-485.971,-500.565,-44.5318,0,-17.2795 1|1:56:0,5,51:0:0:5,51:196,1993:-180.344,-164.226,-162.721,-16.5101,0,-1.15754 1|1:83:6,2,74:6:235:2,74:66,2845:-234.693,-231.166,-249.888,-2.92231,-16.9549,0 dDocent_Contig_3960 130 . T C 1619.15 . AB=0.756098;ABP=49.7234;AC=3;AF=0.5;AN=6;AO=62;CIGAR=1X;DP=82;DPB=82;DPRA=0;EPP=137.642;EPPR=46.4397;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=2124;QR=717;RO=20;RPL=0;RPP=137.642;RPPR=46.4397;RPR=62;RUN=1;SAF=0;SAP=137.642;SAR=62;SRF=0;SRP=46.4397;SRR=20;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:35:9,26:9:322:26:881:-69.065,0,-18.7882 0/1:33:8,25:8:287:25:860:-67.782,0,-16.2425 0/1:14:3,11:3:108:11:383:-30.5905,0,-5.86075 dDocent_Contig_3961 123 . C T 38.1761 . AB=0.166667;ABP=31.9633;AC=2;AF=0.333333;AN=6;AO=5;CIGAR=1X;DP=36;DPB=36;DPRA=2.5;EPP=13.8677;EPPR=70.3259;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=162;QR=1062;RO=31;RPL=0;RPP=13.8677;RPPR=70.3259;RPR=5;RUN=1;SAF=0;SAP=13.8677;SAR=5;SRF=0;SRP=70.3259;SRR=31;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:21:17,4:17:584:4:126:-5.32933,0,-46.5624 0/0:6:6,0:6:201:0:0:0,-1.80618,-18.4189 0/1:9:8,1:8:277:1:36:-0.889005,0,-22.5576 dDocent_Contig_3962 19 . G A 74.2909 . AB=0.1125;ABP=107.35;AC=1;AF=0.166667;AN=6;AO=12;CIGAR=1X;DP=140;DPB=140;DPRA=3.18421;EPP=29.068;EPPR=280.959;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=482;QR=5059;RO=128;RPL=0;RPP=29.068;RPPR=280.959;RPR=12;RUN=1;SAF=12;SAP=29.068;SAR=0;SRF=128;SRP=280.959;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:80:71,9:71:2821:9:363:-8.95189,0,-229.909 0/0:19:19,0:19:745:0:0:0,-5.71957,-67.3725 0/0:41:38,3:38:1493:3:119:0,-1.24773,-123.525 dDocent_Contig_3963 12 . C A 352.3 . AB=0.030303;ABP=635.369;AC=1;AF=0.166667;AN=6;AO=10;CIGAR=3M12I2M1X;DP=404;DPB=504;DPRA=0;EPP=24.725;EPPR=72.4974;GTI=0;LEN=1;MEANALT=6.5;MQM=38;MQMR=60;NS=3;NUMALT=4;ODDS=0;PAIRED=0;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=392;QR=1248;RO=32;RPL=0;RPP=24.725;RPPR=72.4974;RPR=10;RUN=1;SAF=10;SAP=24.725;SAR=0;SRF=32;SRP=72.4974;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|1:202:13,0,2,7,7:13:509:0,2,7,7:0,80,272,222:-16.2353,-20.1487,-62.003,-13.5584,-55.4128,-54.8107,0,-41.8543,-35.264,-39.7471,-2.28968,-44.1439,-37.5536,-23.9952,-42.0366 0|0:74:5,0,0,0,4:5:193:0,0,0,4:0,0,0,117:-7.81147,-9.31662,-25.1673,-9.31662,-25.1673,-25.1673,-9.31662,-25.1673,-25.1673,-25.1673,0,-15.8502,-15.8502,-15.8502,-14.6461 0|0:128:14,15,0,3,7:14:546:15,0,3,7:255,0,120,256:-16.7053,-6.52218,-46.888,-20.9197,-51.4035,-65.8044,-12.1361,-42.6208,-57.0209,-56.1179,0,-30.4859,-44.885,-36.1015,-42.7778 dDocent_Contig_3964 63 . T C 40.7783 . AB=0.109091;ABP=76.0113;AC=1;AF=0.166667;AN=6;AO=6;CIGAR=1X;DP=78;DPB=78;DPRA=4.78261;EPP=16.0391;EPPR=159.356;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=0;PAIREDR=0.930556;PAO=0;PQA=0;PQR=0;PRO=0;QA=242;QR=2815;RO=72;RPL=6;RPP=16.0391;RPPR=159.356;RPR=0;RUN=1;SAF=6;SAP=16.0391;SAR=0;SRF=72;SRP=159.356;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:55:49,6:49:1916:6:242:-5.60067,0,-156.094 0/0:10:10,0:10:388:0:0:0,-3.0103,-35.277 0/0:13:13,0:13:511:0:0:0,-3.91339,-46.3354 dDocent_Contig_3965 145 . A G 58.8938 . AB=0.181818;ABP=22.3561;AC=2;AF=0.333334;AN=6;AO=4;CIGAR=1X3M;DP=34;DPB=34;DPRA=0.916667;EPP=11.6962;EPPR=63.8115;GTI=0;LEN=1;MEANALT=1.5;MQM=60;MQMR=60;NS=3;NUMALT=2;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=137;QR=923;RO=28;RPL=0;RPP=11.6962;RPPR=63.8115;RPR=4;RUN=1;SAF=0;SAP=11.6962;SAR=4;SRF=0;SRP=63.8115;SRR=28;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|1:10:7,2,1:7:242:2,1:68,34:-3.40872,0,-19.0678,-2.75793,-16.9126,-22.1262 0|0:12:12,0,0:12:409:0,0:0,0:0,-3.61236,-37.1379,-3.61236,-37.1379,-37.1379 0|1:12:9,0,3:9:272:0,3:0,103:-5.99766,-8.70693,-30.4391,0,-22.0652,-21.1621 dDocent_Contig_3966 40 . A T 593.769 . AB=0.169231;ABP=188.32;AC=1;AF=0.166667;AN=6;AO=33;CIGAR=1X;DP=364;DPB=364;DPRA=2.30769;EPP=74.6689;EPPR=721.768;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=1326;QR=13145;RO=331;RPL=0;RPP=74.6689;RPPR=721.768;RPR=33;RUN=1;SAF=33;SAP=74.6689;SAR=0;SRF=331;SRP=721.768;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:195:162,33:162:6455:33:1326:-60.8998,0,-521.985 0/0:89:89,0:89:3544:0:0:0,-26.7917,-318.999 0/0:80:80,0:80:3146:0:0:0,-24.0824,-283.215 dDocent_Contig_3967 33 . A C 230.572 . AB=0.05;ABP=73.366;AC=0;AF=0;AN=6;AO=2;CIGAR=1X1M1X;DP=91;DPB=91;DPRA=4;EPP=7.35324;EPPR=165.871;GTI=0;LEN=1;MEANALT=2;MQM=22;MQMR=60;NS=3;NUMALT=2;ODDS=0;PAIRED=0;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=82;QR=2993;RO=75;RPL=0;RPP=7.35324;RPPR=165.871;RPR=2;RUN=1;SAF=2;SAP=7.35324;SAR=0;SRF=75;SRP=165.871;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|0:41:37,0,4:37:1488:0,4:0,156:-2.07189,-13.21,-135.849,0,-123.029,-121.825 0|0:10:10,0,0:10:399:0,0:0,0:0,-3.0103,-36.269,-3.0103,-36.269,-36.269 0|0:40:28,2,10:28:1106:2,10:82,397:-24.4002,-29.5103,-119.913,0,-87.8334,-88.1596 dDocent_Contig_3969 9 . G A 5932.96 . AB=0.639241;ABP=56.2251;AC=3;AF=0.5;AN=6;AO=202;CIGAR=1X;DP=316;DPB=316;DPRA=0;EPP=441.648;EPPR=250.558;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=7704;QR=4391;RO=114;RPL=0;RPP=441.648;RPPR=250.558;RPR=202;RUN=1;SAF=202;SAP=441.648;SAR=0;SRF=114;SRP=250.558;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:209:81,128:81:3113:128:4893:-377.487,0,-217.408 0/1:36:12,24:12:465:24:897:-70.2033,0,-31.3649 0/1:71:21,50:21:813:50:1914:-151.129,0,-52.1223 dDocent_Contig_3970 128 . C T 238.345 . AB=0.34375;ABP=9.79615;AC=2;AF=0.333333;AN=6;AO=11;CIGAR=1X;DP=40;DPB=40;DPRA=2;EPP=26.8965;EPPR=65.983;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=403;QR=1042;RO=29;RPL=0;RPP=26.8965;RPPR=65.983;RPR=11;RUN=1;SAF=0;SAP=26.8965;SAR=11;SRF=0;SRP=65.983;SRR=29;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:20:11,9:11:401:9:329:-23.9383,0,-30.4142 0/0:8:8,0:8:282:0:0:0,-2.40824,-25.7196 0/1:12:10,2:10:359:2:74:-3.41352,0,-29.0397 dDocent_Contig_3971 10 . C A 530.492 . AB=0.193103;ABP=121.633;AC=2;AF=0.333333;AN=6;AO=28;CIGAR=1X;DP=187;DPB=187;DPRA=1.72619;EPP=63.8115;EPPR=348.274;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=1106;QR=6378;RO=159;RPL=0;RPP=63.8115;RPPR=348.274;RPR=28;RUN=1;SAF=28;SAP=63.8115;SAR=0;SRF=159;SRP=348.274;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:91:79,12:79:3188:12:471:-15.3435,0,-259.586 0/0:42:42,0:42:1659:0:0:0,-12.6433,-149.535 0/1:54:38,16:38:1531:16:635:-41.2286,0,-121.772 dDocent_Contig_3973 65 . A C 791.126 . AB=0.314286;ABP=34.4656;AC=1;AF=0.166667;AN=6;AO=37;CIGAR=1X;DP=176;DPB=176;DPRA=0;EPP=83.3548;EPPR=304.845;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=6.93889e-18;PAIRED=0;PAIREDR=0.899281;PAO=0;PQA=0;PQR=0;PRO=0;QA=1392;QR=5125;RO=139;RPL=37;RPP=83.3548;RPPR=304.845;RPR=0;RUN=1;SAF=37;SAP=83.3548;SAR=0;SRF=139;SRP=304.845;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:105:72,33:72:2653:33:1244:-80.6351,0,-207.376 0/0:26:24,2:24:900:2:76:0,-0.611969,-74.1026 0/0:45:43,2:43:1572:2:72:0,-6.71044,-134.911 dDocent_Contig_3974 10 . T C 4302.87 . AB=0.375598;ABP=59.1984;AC=3;AF=0.5;AN=6;AO=157;CIGAR=1X2M;DP=418;DPB=418;DPRA=0;EPP=343.931;EPPR=500.277;GTI=0;LEN=1;MEANALT=3.33333;MQM=55.8153;MQMR=59.9607;NS=3;NUMALT=2;ODDS=5.55112e-17;PAIRED=0.961783;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=6174;QR=8937;RO=229;RPL=0;RPP=343.931;RPPR=500.277;RPR=157;RUN=1;SAF=157;SAP=343.931;SAR=0;SRF=229;SRP=500.277;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|1:156:87,4,61:87:3403:4,61:153,2437:-173.823,-187.46,-466.023,0,-267.229,-261.419 0|1:115:69,6,34:69:2661:6,34:237,1301:-84.7657,-86.0316,-302.722,0,-199.009,-208.277 0|1:147:73,9,62:73:2873:9,62:356,2436:-177.221,-170.772,-404.381,0,-207.899,-217.659 dDocent_Contig_3975 10 . C A 568.252 . AB=0.232432;ABP=118.051;AC=3;AF=0.5;AN=6;AO=43;CIGAR=1X3M2X;DP=185;DPB=185;DPRA=0;EPP=96.3836;EPPR=289.645;GTI=0;LEN=1;MEANALT=2;MQM=36.7442;MQMR=60;NS=3;NUMALT=2;ODDS=0;PAIRED=0.372093;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=1719;QR=5233;RO=132;RPL=0;RPP=96.3836;RPPR=289.645;RPR=43;RUN=1;SAF=43;SAP=96.3836;SAR=0;SRF=132;SRP=289.645;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|1:108:68,32,3:68:2694:32,3:1275,120:-58.1392,0,-212.254,-68.715,-212,-289.617 0|1:28:22,4,2:22:868:4,2:161,82:-0.303469,0,-70.2009,-0.0978755,-64.6356,-71.0545 0|1:49:42,7,0:42:1671:7,0:283,0:-2.10347,0,-135.876,-14.7467,-137.983,-152.447 dDocent_Contig_3976 186 . C T 7413.12 . AB=0.854478;ABP=295.511;AC=3;AF=0.5;AN=6;AO=229;CIGAR=1X;DP=268;DPB=268;DPRA=0;EPP=500.277;EPPR=87.6977;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=9192;QR=1552;RO=39;RPL=229;RPP=500.277;RPPR=87.6977;RPR=0;RUN=1;SAF=0;SAP=500.277;SAR=229;SRF=0;SRP=87.6977;SRR=39;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:174:17,157:17:690:157:6307:-514.98,0,-10.0495 0/1:23:3,20:3:116:20:808:-66.1124,0,-3.89309 0/1:71:19,52:19:746:52:2077:-165.741,0,-46.0851 dDocent_Contig_3977 10 . T C 20737.1 . AB=0.86121;ABP=321.459;AC=5;AF=0.833333;AN=6;AO=870;CIGAR=1X;DP=968;DPB=968;DPRA=0;EPP=1892.19;EPPR=207.129;GTI=0;LEN=1;MEANALT=1.33333;MQM=34.8885;MQMR=54.1383;NS=3;NUMALT=1;ODDS=0;PAIRED=0.948276;PAIREDR=0.978723;PAO=0;PQA=0;PQR=0;PRO=0;QA=34622;QR=3672;RO=94;RPL=0;RPP=1892.19;RPPR=207.129;RPR=870;RUN=1;SAF=870;SAP=1892.19;SAR=0;SRF=94;SRP=207.129;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 1/1:454:34,416:34:1333:416:16537:-1002.41,-24.7224,0 1/1:233:21,212:21:823:212:8384:-486.673,-0.819741,0 0/1:281:39,242:39:1516:242:9701:-586.155,0,-48.4626 dDocent_Contig_3978 98 . N C 62.6944 . AB=0;ABP=0;AC=2;AF=1;AN=2;AO=2;CIGAR=4X;DP=2;DPB=2;DPRA=0;EPP=7.35324;EPPR=0;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=0;NS=1;NUMALT=1;ODDS=5.99146;PAIRED=1;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=66;QR=0;RO=0;RPL=2;RPP=7.35324;RPPR=0;RPR=0;RUN=1;SAF=2;SAP=7.35324;SAR=0;SRF=0;SRP=0;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL .:.:.:.:.:.:.:. 1|1:2:0,2:0:0:2:66:-6.26836,-0.60206,0 .:.:.:.:.:.:.:. dDocent_Contig_3979 9 . A G 741.194 . AB=0.348837;ABP=20.0791;AC=3;AF=0.5;AN=6;AO=30;CIGAR=2X;DP=86;DPB=86;DPRA=0;EPP=68.1545;EPPR=124.613;GTI=0;LEN=1;MEANALT=1;MQM=59;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=1161;QR=2178;RO=56;RPL=0;RPP=68.1545;RPPR=124.613;RPR=30;RUN=1;SAF=30;SAP=68.1545;SAR=0;SRF=56;SRP=124.613;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|1:52:34,18:34:1314:18:699:-47.5736,0,-102.885 0|1:9:4,5:4:159:5:189:-14.6629,0,-11.9831 0|1:25:18,7:18:705:7:273:-17.4058,0,-56.2566 dDocent_Contig_3980 90 . C A 1065.4 . AB=0.0588235;ABP=60.4905;AC=0;AF=0;AN=6;AO=2;CIGAR=2X;DP=70;DPB=70;DPRA=0;EPP=7.35324;EPPR=57.2971;GTI=0;LEN=1;MEANALT=2;MQM=60;MQMR=60;NS=3;NUMALT=2;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=27;QR=854;RO=25;RPL=2;RPP=7.35324;RPPR=57.2971;RPR=0;RUN=1;SAF=2;SAP=7.35324;SAR=0;SRF=25;SRP=57.2971;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|0:34:11,2,21:11:370:2,21:27,721:-55.424,-56.9255,-86.2989,0,-28.3512,-23.8265 0|0:19:12,0,7:12:415:0,7:0,217:-14.1148,-17.7271,-51.4737,0,-34.0697,-31.9625 0|0:17:2,0,15:2:69:0,15:0,519:-41.9212,-42.5233,-48.1289,0,-5.9506,-1.43515 dDocent_Contig_3981 13 . C T 109.964 . AB=0.148148;ABP=61.0771;AC=1;AF=0.166667;AN=6;AO=8;CIGAR=1X;DP=196;DPB=196;DPRA=0.760563;EPP=20.3821;EPPR=411.247;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=319;QR=7542;RO=188;RPL=0;RPP=20.3821;RPPR=411.247;RPR=8;RUN=1;SAF=8;SAP=20.3821;SAR=0;SRF=188;SRP=411.247;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:118:118,0:118:4701:0:0:0,-35.5215,-422.99 0/0:24:24,0:24:977:0:0:0,-7.22472,-88.226 0/1:54:46,8:46:1864:8:319:-12.8203,0,-151.703 dDocent_Contig_3982 18 . C A 30.5882 . AB=0.2;ABP=10.8276;AC=1;AF=0.166667;AN=6;AO=2;CIGAR=1X2M1X;DP=36;DPB=36;DPRA=0.769231;EPP=7.35324;EPPR=76.8404;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=80;QR=1342;RO=34;RPL=0;RPP=7.35324;RPPR=76.8404;RPR=2;RUN=1;SAF=2;SAP=7.35324;SAR=0;SRF=34;SRP=76.8404;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|1:10:8,2:8:321:2:80:-4.58128,0,-26.2471 0|0:5:5,0:5:202:0:0:0,-1.50515,-18.5621 0|0:21:21,0:21:819:0:0:0,-6.32163,-74.0172 dDocent_Contig_3983 42 . C T 270.843 . AB=0.151261;ABP=128.718;AC=2;AF=0.333333;AN=6;AO=18;CIGAR=1X;DP=137;DPB=137;DPRA=3.30556;EPP=42.0968;EPPR=261.416;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=6.93889e-18;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=730;QR=4760;RO=119;RPL=0;RPP=42.0968;RPPR=261.416;RPR=18;RUN=1;SAF=18;SAP=42.0968;SAR=0;SRF=119;SRP=261.416;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:85:71,14:71:2836:14:568:-25.875,0,-229.762 0/0:18:18,0:18:722:0:0:0,-5.41854,-65.3073 0/1:34:30,4:30:1202:4:162:-4.73194,0,-98.2213 dDocent_Contig_3984 12 . T C 6595.71 . AB=0.411348;ABP=41.5116;AC=3;AF=0.5;AN=6;AO=232;CIGAR=1X;DP=564;DPB=564;DPRA=0;EPP=506.792;EPPR=723.939;GTI=0;LEN=1;MEANALT=1;MQM=56.694;MQMR=59.7108;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=9288;QR=13237;RO=332;RPL=0;RPP=506.792;RPPR=723.939;RPR=232;RUN=1;SAF=232;SAP=506.792;SAR=0;SRF=332;SRP=723.939;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:301:161,140:161:6392:140:5615:-413.871,0,-484.394 0/1:82:51,31:51:2021:31:1244:-87.3755,0,-155.433 0/1:181:120,61:120:4824:61:2429:-163.847,0,-379.554 dDocent_Contig_3985 21 . G A 108.849 . AB=0;ABP=0;AC=2;AF=0.333333;AN=6;AO=83;CIGAR=1X;DP=191;DPB=191;DPRA=0;EPP=183.243;EPPR=237.529;GTI=0;LEN=1;MEANALT=1;MQM=7;MQMR=7;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=3336;QR=4369;RO=108;RPL=0;RPP=183.243;RPPR=237.529;RPR=83;RUN=1;SAF=83;SAP=183.243;SAR=0;SRF=108;SRP=237.529;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:121:80,41:80:3248:41:1653:0,-10.5315,-24.5656 1/1:31:7,24:7:282:24:963:-10.7063,-4.85301,0 0/0:39:21,18:21:839:18:720:0,-0.33411,-1.889 dDocent_Contig_3986 59 . T C 3895.36 . AB=0.801887;ABP=86.9193;AC=4;AF=0.666667;AN=6;AO=119;CIGAR=1X;DP=140;DPB=140;DPRA=0;EPP=261.416;EPPR=48.6112;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=4714;QR=827;RO=21;RPL=119;RPP=261.416;RPPR=48.6112;RPR=0;RUN=1;SAF=119;SAP=261.416;SAR=0;SRF=21;SRP=48.6112;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:85:14,71:14:549:71:2806:-227.055,0,-24.1628 1/1:34:0,34:0:0:34:1342:-121.043,-10.235,0 0/1:21:7,14:7:278:14:566:-44.9612,0,-19.068 dDocent_Contig_3987 9 . G T 3439.43 . AB=0.0311111;ABP=432.682;AC=0;AF=0;AN=6;AO=7;CIGAR=2X;DP=239;DPB=239;DPRA=0;EPP=18.2106;EPPR=248.387;GTI=0;LEN=1;MEANALT=2;MQM=60;MQMR=60;NS=3;NUMALT=2;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=274;QR=4385;RO=113;RPL=0;RPP=18.2106;RPPR=248.387;RPR=7;RUN=1;SAF=7;SAP=18.2106;SAR=0;SRF=113;SRP=248.387;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|0:183:91,1,91:91:3530:1,91:37,3556:-264.953,-289.32,-579.034,0,-287.007,-262.64 0|0:14:11,0,3:11:426:0,3:0,120:-6.97327,-10.2846,-45.2698,0,-35.3821,-34.479 0|0:42:11,6,25:11:429:6,25:237,983:-77.5399,-61.3485,-94.8042,0,-15.7555,-27.7339 dDocent_Contig_3988 128 . C T 2295.25 . AB=0.727273;ABP=57.2971;AC=3;AF=0.5;AN=6;AO=88;CIGAR=1X;DP=121;DPB=121;DPRA=0;EPP=194.1;EPPR=74.6689;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=2989;QR=1131;RO=33;RPL=0;RPP=194.1;RPPR=74.6689;RPR=88;RUN=1;SAF=0;SAP=194.1;SAR=88;SRF=0;SRP=74.6689;SRR=33;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:61:18,43:18:619:43:1464:-113.688,0,-37.671 0/1:29:12,17:12:407:17:581:-43.8836,0,-28.2262 0/1:31:3,28:3:105:28:944:-75.9359,0,-0.464232 dDocent_Contig_3989 9 . G A 1483.17 . AB=0.240143;ABP=166.649;AC=3;AF=0.5;AN=6;AO=67;CIGAR=1X3M1X;DP=279;DPB=279;DPRA=0;EPP=148.499;EPPR=463.362;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=0.995283;PAO=0;PQA=0;PQR=0;PRO=0;QA=2632;QR=8297;RO=212;RPL=0;RPP=148.499;RPPR=463.362;RPR=67;RUN=1;SAF=67;SAP=148.499;SAR=0;SRF=212;SRP=463.362;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|1:142:118,24:118:4634:24:940:-42.1634,0,-374.294 0|1:35:25,10:25:965:10:393:-25.1928,0,-76.6225 0|1:102:69,33:69:2698:33:1299:-86.4839,0,-212.271 dDocent_Contig_3990 110 . C T 182.987 . AB=0.185185;ABP=72.7387;AC=2;AF=0.333333;AN=6;AO=16;CIGAR=1X;DP=98;DPB=98;DPRA=0;EPP=37.7539;EPPR=181.071;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=541;QR=2820;RO=82;RPL=0;RPP=37.7539;RPPR=181.071;RPR=16;RUN=1;SAF=0;SAP=37.7539;SAR=16;SRF=0;SRP=181.071;SRR=82;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:56:45,11:45:1554:11:367:-16.4945,0,-123.296 0/0:17:16,1:16:543:1:35:0,-1.61888,-45.6923 0/1:25:21,4:21:723:4:139:-5.32694,0,-57.8645 dDocent_Contig_3991 27 . T A 1942.23 . AB=0.479167;ABP=3.55317;AC=3;AF=0.5;AN=6;AO=69;CIGAR=1X;DP=144;DPB=144;DPRA=0;EPP=152.842;EPPR=165.871;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=0.973333;PAO=0;PQA=0;PQR=0;PRO=0;QA=2691;QR=2975;RO=75;RPL=0;RPP=152.842;RPPR=165.871;RPR=69;RUN=1;SAF=69;SAP=152.842;SAR=0;SRF=75;SRP=165.871;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:64:35,29:35:1406:29:1136:-83.2634,0,-107.526 0/1:26:15,11:15:588:11:418:-30.1369,0,-45.4278 0/1:54:25,29:25:981:29:1137:-86.3457,0,-72.3243 dDocent_Contig_3992 108 . C T 161.026 . AB=0.533333;ABP=3.15506;AC=1;AF=0.166667;AN=6;AO=8;CIGAR=1X;DP=61;DPB=61;DPRA=0.652174;EPP=20.3821;EPPR=118.098;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=246;QR=1551;RO=53;RPL=0;RPP=20.3821;RPPR=118.098;RPR=8;RUN=1;SAF=0;SAP=20.3821;SAR=8;SRF=0;SRP=118.098;SRR=53;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:36:36,0:36:1041:0:0:0,-10.8371,-93.959 0/1:15:7,8:7:196:8:246:-17.9265,0,-13.401 0/0:10:10,0:10:314:0:0:0,-3.0103,-28.5675 dDocent_Contig_3994 116 . A G 4534.49 . AB=0.387234;ABP=28.9663;AC=5;AF=0.833333;AN=6;AO=91;CIGAR=1X1M;DP=235;DPB=235;DPRA=0;EPP=200.614;EPPR=87.6977;GTI=0;LEN=1;MEANALT=2.33333;MQM=60;MQMR=60;NS=3;NUMALT=2;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=3099;QR=1319;RO=39;RPL=0;RPP=200.614;RPPR=87.6977;RPR=91;RUN=1;SAF=0;SAP=200.614;SAR=91;SRF=0;SRP=87.6977;SRR=39;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 1|1:58:3,19,36:3:105:19,36:651,1215:-141.867,-89.9189,-92.7435,-44.2986,0,-42.0057 1|1:78:9,26,43:9:313:26,43:881,1474:-162.936,-94.2115,-111.836,-45.9763,0,-58.4844 0|1:99:27,58,12:27:901:58,12:1998,410:-154.169,0,-55.4677,-129.023,-39.6514,-198.34 dDocent_Contig_3996 50 . G A 1323.28 . AB=0.436364;ABP=6.87947;AC=3;AF=0.5;AN=6;AO=48;CIGAR=1X;DP=110;DPB=110;DPRA=0;EPP=107.241;EPPR=137.642;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=1889;QR=2494;RO=62;RPL=48;RPP=107.241;RPPR=137.642;RPR=0;RUN=1;SAF=48;SAP=107.241;SAR=0;SRF=62;SRP=137.642;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:55:26,29:26:1053:29:1170:-89.0213,0,-78.5019 0/1:21:14,7:14:564:7:250:-16.5087,0,-44.781 0/1:34:22,12:22:877:12:469:-32.3208,0,-69.0029 dDocent_Contig_3997 42 . A T 279.494 . AB=0.222222;ABP=51.2652;AC=2;AF=0.333333;AN=6;AO=17;CIGAR=1X;DP=91;DPB=91;DPRA=0;EPP=39.9253;EPPR=163.699;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=6.93889e-18;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=620;QR=2883;RO=74;RPL=0;RPP=39.9253;RPPR=163.699;RPR=17;RUN=1;SAF=17;SAP=39.9253;SAR=0;SRF=74;SRP=163.699;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:56:44,12:44:1706:12:448:-23.8078,0,-136.909 0/0:19:18,1:18:708:1:37:0,-2.02174,-60.3498 0/1:16:12,4:12:469:4:135:-7.66447,0,-37.737 dDocent_Contig_3998 25 . C A 5082.26 . AB=0.0389105;ABP=952.189;AC=3;AF=0.5;AN=6;AO=20;CIGAR=1X1M1X4M1I3M1X;DP=514;DPB=531.818;DPRA=0;EPP=46.4397;EPPR=57.2971;GTI=0;LEN=1;MEANALT=22.3333;MQM=59.85;MQMR=60;NS=3;NUMALT=9;ODDS=0;PAIRED=1;PAIREDR=0.92;PAO=0;PQA=0;PQR=0;PRO=0;QA=739;QR=961;RO=25;RPL=0;RPP=46.4397;RPPR=57.2971;RPR=20;RUN=1;SAF=20;SAP=46.4397;SAR=0;SRF=25;SRP=57.2971;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 1|0:262:11,64,9,15,10,21,13,14,37,18:11:426:64,9,15,10,21,13,14,37,18:2266,326,577,324,774,458,249,1464,666:-265.317,-84.7164,-100.448,-242.014,-93.0996,-274.302,-221.749,-72.8344,-230.132,-252.231,-244.006,-95.0929,-252.389,-232.124,-275.993,-206.216,-57.3016,-214.599,-194.334,-216.592,-234.892,-231.432,-82.5181,-239.815,-219.55,-241.808,-204.017,-262.516,-252.916,-104.006,-261.299,-241.034,-263.292,-225.502,-250.718,-283.699,-148.917,0,-157.3,-137.034,-159.293,-121.502,-146.718,-168.203,-172.776,-214.846,-65.9322,-223.229,-202.965,-225.222,-187.432,-212.648,-234.132,-130.132,-244.425 1|0:136:11,22,8,3,14,3,4,11,20,9:11:420:22,8,3,14,3,4,11,20,9:797,301,114,432,106,152,181,801,345:-92.4793,-30.9872,-58.8288,-71.1264,-40.7868,-103.181,-86.4842,-56.1449,-96.2833,-120.044,-63.3903,-33.0513,-73.1894,-88.5468,-93.6386,-87.2461,-56.9069,-97.0452,-112.403,-89.3088,-120.806,-83.3621,-53.0228,-93.1613,-108.519,-85.4248,-109.281,-116.621,-85.2129,-54.8754,-95.0116,-110.368,-87.2767,-111.13,-107.247,-116.363,-30.3412,0,-40.1409,-55.4992,-32.4049,-56.2612,-52.377,-54.2289,-58.7853,-67.558,-37.2182,-77.3573,-92.7149,-69.621,-93.4769,-89.5929,-91.4434,-36.5723,-99.312 1|0:116:3,38,3,4,6,4,6,3,18,0:3:115:38,3,4,6,4,6,3,18,0:1350,112,153,230,140,213,18,701,0:-155.953,-47.9264,-45.9284,-147.684,-48.1949,-156.221,-144.422,-44.9321,-144.69,-152.658,-137.98,-38.4898,-138.249,-134.986,-145.614,-145.637,-46.1483,-145.906,-142.644,-136.202,-153.873,-139.537,-40.0469,-139.805,-136.543,-130.101,-137.758,-147.171,-156.802,-57.3174,-157.071,-153.809,-147.367,-155.024,-148.924,-165.339,-99.4975,0,-99.7659,-96.5034,-90.0615,-97.7192,-91.6181,-108.886,-103.52,-156.856,-57.3675,-157.124,-153.862,-147.421,-155.078,-148.977,-166.242,-108.938,-166.296 dDocent_Contig_3999 7 . C A 17029.5 . AB=0.860465;ABP=100.07;AC=5;AF=0.833333;AN=6;AO=530;CIGAR=1X;DP=572;DPB=572;DPRA=0;EPP=1153.89;EPPR=92.0407;GTI=0;LEN=1;MEANALT=1.33333;MQM=59.9887;MQMR=58.0488;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=20345;QR=1565;RO=41;RPL=0;RPP=1153.89;RPPR=92.0407;RPR=530;RUN=1;SAF=530;SAP=1153.89;SAR=0;SRF=41;SRP=92.0407;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 1/1:370:19,350:19:737:350:13468:-1145.54,-45.2132,0 0/1:86:12,74:12:450:74:2840:-229.889,0,-14.7296 1/1:116:10,106:10:378:106:4037:-329.038,-0.546952,0 dDocent_Contig_4001 10 . A T 632.4 . AB=0.232394;ABP=91.3372;AC=3;AF=0.5;AN=6;AO=33;CIGAR=1X;DP=142;DPB=142;DPRA=0;EPP=74.6689;EPPR=235.358;GTI=0;LEN=1;MEANALT=1.66667;MQM=52.6061;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=0;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=1262;QR=4176;RO=107;RPL=0;RPP=74.6689;RPPR=235.358;RPR=33;RUN=1;SAF=33;SAP=74.6689;SAR=0;SRF=107;SRP=235.358;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:82:70,11:70:2729:11:434:-13.9178,0,-221.125 0/1:35:18,16:18:698:16:594:-40.9544,0,-52.5241 0/1:25:19,6:19:749:6:234:-13.8907,0,-60.2083 dDocent_Contig_4003 37 . C A 419.218 . AB=0.565217;ABP=3.86001;AC=4;AF=0.666667;AN=6;AO=14;CIGAR=1X;DP=24;DPB=24;DPRA=0;EPP=33.4109;EPPR=24.725;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=569;QR=409;RO=10;RPL=0;RPP=33.4109;RPPR=24.725;RPR=14;RUN=1;SAF=14;SAP=33.4109;SAR=0;SRF=10;SRP=24.725;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:11:5,6:5:205:6:245:-19.1181,0,-15.5237 0/1:12:5,7:5:204:7:283:-22.2312,0,-15.1317 1/1:1:0,1:0:0:1:41:-4.09457,-0.30103,0 dDocent_Contig_4004 27 . T A 1721.68 . AB=0.328283;ABP=53.7219;AC=3;AF=0.5;AN=6;AO=65;CIGAR=1X1M;DP=198;DPB=198;DPRA=0;EPP=144.156;EPPR=280.959;GTI=0;LEN=1;MEANALT=1.33333;MQM=60;MQMR=60;NS=3;NUMALT=2;ODDS=1.38778e-17;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=2614;QR=5062;RO=128;RPL=0;RPP=144.156;RPPR=280.959;RPR=65;RUN=1;SAF=65;SAP=144.156;SAR=0;SRF=128;SRP=280.959;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|1:101:59,0,42:59:2350:0,42:0,1689:-121.828,-139.589,-333.082,0,-193.894,-181.25 0|1:28:22,0,6:22:870:0,6:0,243:-13.8193,-20.442,-92.0305,0,-71.991,-70.1848 0|1:69:47,5,17:47:1842:5,17:200,682:-42.0432,-39.717,-189.665,0,-134.977,-146.335 dDocent_Contig_4005 164 . C T 194.931 . AB=0.294118;ABP=15.5282;AC=1;AF=0.166667;AN=6;AO=12;CIGAR=1X;DP=110;DPB=110;DPRA=0.6;EPP=29.068;EPPR=215.815;GTI=0;LEN=1;MEANALT=1;MQM=58.8333;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=0;PAIREDR=0.816327;PAO=0;PQA=0;PQR=0;PRO=0;QA=406;QR=3805;RO=98;RPL=12;RPP=29.068;RPPR=215.815;RPR=0;RUN=1;SAF=0;SAP=29.068;SAR=12;SRF=0;SRP=215.815;SRR=98;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:50:50,0:50:1925:0:0:0,-15.0515,-173.466 0/1:34:24,10:24:960:10:347:-21.317,0,-76.4686 0/0:26:24,2:24:920:2:59:0,-2.24211,-77.5194 dDocent_Contig_4006 106 . N T 150.307 . AB=0;ABP=0;AC=4;AF=1;AN=4;AO=5;CIGAR=2X;DP=5;DPB=5;DPRA=0;EPP=13.8677;EPPR=0;GTI=0;LEN=1;MEANALT=1;MQM=40;MQMR=0;NS=2;NUMALT=1;ODDS=0;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=160;QR=0;RO=0;RPL=0;RPP=13.8677;RPPR=0;RPR=5;RUN=1;SAF=0;SAP=13.8677;SAR=5;SRF=0;SRP=0;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL .:.:.:.:.:.:.:. 1|1:1:0,1:0:0:1:31:-3.04854,-0.30103,0 1|1:4:0,4:0:0:4:129:-11.6797,-1.20412,0 dDocent_Contig_4007 30 . A G 394.96 . AB=0.185841;ABP=99.881;AC=2;AF=0.333333;AN=6;AO=22;CIGAR=1X;DP=130;DPB=130;DPRA=0;EPP=50.7827;EPPR=237.529;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=0.953704;PAO=0;PQA=0;PQR=0;PRO=0;QA=884;QR=4246;RO=108;RPL=0;RPP=50.7827;RPPR=237.529;RPR=22;RUN=1;SAF=22;SAP=50.7827;SAR=0;SRF=108;SRP=237.529;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:73:62,11:62:2443:11:445:-18.4305,0,-198.052 0/0:17:16,1:16:623:1:36:0,-1.51923,-52.8048 0/1:40:30,10:30:1180:10:403:-24.5883,0,-94.4377 dDocent_Contig_4008 32 . C A 108.122 . AB=0.175;ABP=39.7082;AC=2;AF=0.333333;AN=6;AO=7;CIGAR=1X;DP=49;DPB=49;DPRA=2.22222;EPP=18.2106;EPPR=94.2121;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=0.857143;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=284;QR=1696;RO=42;RPL=0;RPP=18.2106;RPPR=94.2121;RPR=7;RUN=1;SAF=7;SAP=18.2106;SAR=0;SRF=42;SRP=94.2121;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:17:15,2:15:611:2:81:-2.56822,0,-50.2094 0/0:9:9,0:9:362:0:0:0,-2.70927,-32.9438 0/1:23:18,5:18:723:5:203:-11.7294,0,-58.4706 dDocent_Contig_4009 98 . N T 201.705 . AB=0;ABP=0;AC=4;AF=1;AN=4;AO=6;CIGAR=1X;DP=6;DPB=6;DPRA=0;EPP=16.0391;EPPR=0;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=0;NS=2;NUMALT=1;ODDS=0;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=213;QR=0;RO=0;RPL=6;RPP=16.0391;RPPR=0;RPR=0;RUN=1;SAF=6;SAP=16.0391;SAR=0;SRF=0;SRP=0;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 1/1:4:0,4:0:0:4:143:-13.2214,-1.20412,0 ./.:.:.:.:.:.:.:. 1/1:2:0,2:0:0:2:70:-6.64733,-0.60206,0 dDocent_Contig_4010 19 . C A 73.8425 . AB=0.16129;ABP=33.9012;AC=1;AF=0.166667;AN=6;AO=5;CIGAR=1X2M2D1M;DP=93;DPB=91.3333;DPRA=1;EPP=13.8677;EPPR=194.1;GTI=0;LEN=1;MEANALT=1;MQM=57;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=202;QR=3447;RO=88;RPL=0;RPP=13.8677;RPPR=194.1;RPR=5;RUN=1;SAF=5;SAP=13.8677;SAR=0;SRF=88;SRP=194.1;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|0:46:46,0:46:1807:0:0:0,-13.8474,-162.853 0|1:31:26,5:26:1015:5:202:-9.20816,0,-82.3173 0|0:16:16,0:16:625:0:0:0,-4.81648,-56.5845 dDocent_Contig_4011 26 . A G 932.568 . AB=0.378947;ABP=15.102;AC=3;AF=0.5;AN=6;AO=36;CIGAR=1X;DP=95;DPB=95;DPRA=0;EPP=81.1833;EPPR=131.127;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=0.983051;PAO=0;PQA=0;PQR=0;PRO=0;QA=1404;QR=2391;RO=59;RPL=0;RPP=81.1833;RPPR=131.127;RPR=36;RUN=1;SAF=36;SAP=81.1833;SAR=0;SRF=59;SRP=131.127;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:56:40,16:40:1622:16:625:-39.7151,0,-129.349 0/1:17:8,9:8:325:9:360:-27.6447,0,-24.5019 0/1:22:11,11:11:444:11:419:-31.4199,0,-33.6926 dDocent_Contig_4012 30 . A G 470.45 . AB=0.244444;ABP=54.064;AC=3;AF=0.5;AN=6;AO=22;CIGAR=1X;DP=90;DPB=90;DPRA=0;EPP=50.7827;EPPR=150.67;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=873;QR=2688;RO=68;RPL=0;RPP=50.7827;RPPR=150.67;RPR=22;RUN=1;SAF=22;SAP=50.7827;SAR=0;SRF=68;SRP=150.67;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:42:31,11:31:1230:11:440:-27.3113,0,-98.3318 0/1:33:27,6:27:1058:6:246:-12.5861,0,-85.5762 0/1:15:10,5:10:400:5:187:-12.6705,0,-31.843 dDocent_Contig_4013 81 . T G 8230.34 . AB=0.738916;ABP=204.305;AC=3;AF=0.5;AN=6;AO=300;CIGAR=1X;DP=406;DPB=406;DPRA=0;EPP=654.452;EPPR=233.186;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=10557;QR=3667;RO=106;RPL=300;RPP=654.452;RPPR=233.186;RPR=0;RUN=1;SAF=300;SAP=654.452;SAR=0;SRF=106;SRP=233.186;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:253:65,188:65:2253:188:6618:-519.554,0,-126.88 0/1:65:18,47:18:639:47:1708:-134.436,0,-38.2728 0/1:88:23,65:23:775:65:2231:-174.567,0,-43.5726 dDocent_Contig_4014 8 . T C 90.0189 . AB=0.193548;ABP=28.2974;AC=2;AF=0.333333;AN=6;AO=6;CIGAR=1X;DP=42;DPB=42;DPRA=1.40909;EPP=16.0391;EPPR=81.1833;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=234;QR=1387;RO=36;RPL=0;RPP=16.0391;RPPR=81.1833;RPR=6;RUN=1;SAF=6;SAP=16.0391;SAR=0;SRF=36;SRP=81.1833;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:16:14,2:14:541:2:78:-2.58699,0,-44.2192 0/0:11:11,0:11:424:0:0:0,-3.31133,-38.514 0/1:15:11,4:11:422:4:156:-9.90184,0,-33.8175 dDocent_Contig_4015 53 . A T 3094.6 . AB=0.682692;ABP=33.1604;AC=4;AF=0.666667;AN=6;AO=99;CIGAR=1X;DP=134;DPB=134;DPRA=0;EPP=217.986;EPPR=79.0118;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=0.942857;PAO=0;PQA=0;PQR=0;PRO=0;QA=3902;QR=1366;RO=35;RPL=99;RPP=217.986;RPPR=79.0118;RPR=0;RUN=1;SAF=99;SAP=217.986;SAR=0;SRF=35;SRP=79.0118;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:77:17,60:17:661:60:2364:-189.739,0,-36.6364 0/1:27:16,11:16:624:11:426:-30.5632,0,-48.3658 1/1:30:2,28:2:81:28:1112:-92.6802,-1.34517,0 dDocent_Contig_4016 8 . T C 66070.7 . AB=0.854175;ABP=2730.17;AC=3;AF=0.5;AN=6;AO=2138;CIGAR=1X;DP=2503;DPB=2503;DPRA=0;EPP=4645.62;EPPR=756.511;GTI=0;LEN=1;MEANALT=1.66667;MQM=59.5514;MQMR=59.3401;NS=3;NUMALT=1;ODDS=0;PAIRED=0.996726;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=82209;QR=13309;RO=347;RPL=0;RPP=4645.62;RPPR=756.511;RPR=2138;RUN=1;SAF=2138;SAP=4645.62;SAR=0;SRF=347;SRP=756.511;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:1586:232,1339:232:8909:1339:51500:-4143.74,0,-327.514 0/1:237:35,202:35:1340:202:7749:-618.818,0,-49.4745 0/1:680:80,597:80:3060:597:22960:-1850.04,0,-70.7327 dDocent_Contig_4017 8 . T C 5688.73 . AB=0.622699;ABP=45.6404;AC=3;AF=0.5;AN=6;AO=203;CIGAR=1X3M;DP=326;DPB=326;DPRA=0;EPP=443.819;EPPR=150.67;GTI=0;LEN=1;MEANALT=3;MQM=51.0099;MQMR=57.6471;NS=3;NUMALT=3;ODDS=0;PAIRED=0.980296;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=7423;QR=2619;RO=68;RPL=0;RPP=443.819;RPPR=150.67;RPR=203;RUN=1;SAF=203;SAP=443.819;SAR=0;SRF=68;SRP=150.67;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|1:195:33,19,21,122:33:1270:19,21,122:718,696,4482:-348.232,-306.627,-404.12,-304.049,-355.723,-400.94,0,-51.696,-49.1229,-66.5064 0|1:46:18,2,4,22:18:689:2,4,22:75,125,738:-52.8814,-52.2829,-108.189,-48.5344,-99.0261,-103.837,0,-50.513,-46.7702,-49.9043 0|1:85:17,4,5,59:17:660:4,5,59:150,125,2203:-173.282,-174.944,-227.483,-170.016,-220.304,-222.255,0,-50.4365,-45.5007,-36.1109 dDocent_Contig_4018 8 . T C 7942.92 . AB=0.623256;ABP=59.7514;AC=3;AF=0.5;AN=6;AO=268;CIGAR=1X;DP=430;DPB=430;DPRA=0;EPP=584.965;EPPR=354.789;GTI=0;LEN=1;MEANALT=1;MQM=58.791;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=10329;QR=6206;RO=162;RPL=0;RPP=584.965;RPPR=354.789;RPR=268;RUN=1;SAF=268;SAP=584.965;SAR=0;SRF=162;SRP=354.789;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:270:105,165:105:4020:165:6356:-490.346,0,-280.613 0/1:39:18,21:18:681:21:812:-61.6101,0,-49.8813 0/1:121:39,82:39:1505:82:3161:-247.859,0,-99.2988 dDocent_Contig_4020 1 . N G 58.125 . AB=0;ABP=0;AC=2;AF=1;AN=2;AO=2;CIGAR=1X;DP=2;DPB=2;DPRA=0;EPP=7.35324;EPPR=0;GTI=0;LEN=1;MEANALT=1;MQM=31;MQMR=0;NS=1;NUMALT=1;ODDS=5.99146;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=82;QR=0;RO=0;RPL=0;RPP=7.35324;RPPR=0;RPR=2;RUN=1;SAF=2;SAP=7.35324;SAR=0;SRF=0;SRP=0;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL ./.:.:.:.:.:.:.:. ./.:.:.:.:.:.:.:. 1/1:2:0,2:0:0:2:82:-5.81141,-0.60206,0 dDocent_Contig_4022 10 . A T 185.217 . AB=0.192308;ABP=45.7716;AC=1;AF=0.166667;AN=6;AO=12;CIGAR=1X;DP=198;DPB=198;DPRA=0.36087;EPP=29.068;EPPR=406.904;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=3.46945e-18;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=475;QR=7342;RO=186;RPL=0;RPP=29.068;RPPR=406.904;RPR=12;RUN=1;SAF=12;SAP=29.068;SAR=0;SRF=186;SRP=406.904;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:115:115,0:115:4524:0:0:0,-34.6184,-407.092 0/0:31:29,2:29:1157:2:79:0,-1.8343,-96.9146 0/1:52:42,10:42:1661:10:396:-20.3456,0,-134.063 dDocent_Contig_4025 59 . A G 463.042 . AB=0.191489;ABP=41.8658;AC=1;AF=0.166667;AN=6;AO=9;CIGAR=1M1X9M;DP=132;DPB=115.636;DPRA=3.35714;EPP=22.5536;EPPR=226.672;GTI=0;LEN=1;MEANALT=2;MQM=60;MQMR=60;NS=3;NUMALT=2;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=350;QR=4031;RO=103;RPL=9;RPP=22.5536;RPPR=226.672;RPR=0;RUN=1;SAF=9;SAP=22.5536;SAR=0;SRF=103;SRP=226.672;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|0:71:54,17,0:54:2114:17,0:585,0:-31.5967,0,-169.097,-47.8523,-174.214,-221.712 0|0:14:14,0,0:14:533:0,0:0,0:0,-4.21442,-48.313,-4.21442,-48.313,-48.313 0|1:47:35,3,9:35:1384:3,9:112,350:-18.2304,-19.5999,-132.601,0,-104.75,-111.21 dDocent_Contig_4026 33 . A G 2210.83 . AB=0.74026;ABP=41.6174;AC=4;AF=0.666667;AN=6;AO=69;CIGAR=1X;DP=89;DPB=89;DPRA=0;EPP=152.842;EPPR=46.4397;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=2743;QR=818;RO=20;RPL=0;RPP=152.842;RPPR=46.4397;RPR=69;RUN=1;SAF=69;SAP=152.842;SAR=0;SRF=20;SRP=46.4397;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:58:15,43:15:613:43:1697:-135.496,0,-38.0471 1/1:12:0,12:0:0:12:474:-43.0079,-3.61236,0 0/1:19:5,14:5:205:14:572:-46.102,0,-13.1154 dDocent_Contig_4027 45 . G A 57.3538 . AB=0.16;ABP=28.1125;AC=1;AF=0.166667;AN=6;AO=4;CIGAR=1X2M1X;DP=60;DPB=60;DPRA=1.42857;EPP=11.6962;EPPR=124.613;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=1.73472e-18;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=160;QR=2154;RO=56;RPL=0;RPP=11.6962;RPPR=124.613;RPR=4;RUN=1;SAF=4;SAP=11.6962;SAR=0;SRF=56;SRP=124.613;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|1:25:21,4:21:827:4:160:-7.25826,0,-67.2236 0|0:17:17,0:17:641:0:0:0,-5.11751,-58.0153 0|0:18:18,0:18:686:0:0:0,-5.41854,-62.061 dDocent_Contig_4028 8 . T C 710.324 . AB=0.136364;ABP=129.351;AC=0;AF=0;AN=6;AO=15;CIGAR=2X9M1X1M;DP=139;DPB=140.385;DPRA=0;EPP=35.5824;EPPR=85.5263;GTI=0;LEN=1;MEANALT=8;MQM=60;MQMR=60;NS=3;NUMALT=8;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=546;QR=1478;RO=38;RPL=0;RPP=35.5824;RPPR=85.5263;RPR=15;RUN=1;SAF=15;SAP=35.5824;SAR=0;SRF=38;SRP=85.5263;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|0:91:23,8,2,14,1,10,0,4,17:23:900:8,2,14,1,10,0,4,17:310,78,507,38,390,0,164,674:-48.5513,-30.0068,-101.601,-49.0631,-97.5975,-122.464,-14.0963,-62.6294,-81.6853,-83.8825,-52.3586,-100.893,-119.949,-84.9806,-126.06,-23.4194,-71.9539,-91.0102,-56.0423,-94.3056,-94.4117,-55.475,-104.009,-123.066,-88.097,-126.361,-97.422,-129.477,-41.9373,-90.4719,-109.528,-74.5597,-112.824,-83.8846,-115.94,-114.736,0,-48.5353,-67.5917,-32.6241,-70.8871,-41.9479,-74.0036,-60.4659,-68.8861 0|0:19:6,2,1,1,2,3,0,0,4:6:227:2,1,1,2,3,0,0,4:78,39,39,72,116,0,0,158:-11.1994,-6.59316,-24.5973,-9.79942,-21.993,-28.1046,-9.79942,-21.993,-25.1993,-28.1046,-7.13559,-19.3276,-22.5337,-22.5337,-25.1378,-3.47719,-15.6703,-18.8766,-18.8766,-16.2115,-21.1799,-13.0056,-25.1993,-28.4056,-28.4056,-25.7398,-22.083,-31.6118,-13.0056,-25.1993,-28.4056,-28.4056,-25.7398,-22.083,-31.6118,-31.6118,0,-12.1939,-15.4006,-15.4006,-12.7355,-9.07734,-18.6071,-18.6071,-17.403 0|0:29:9,0,6,0,0,4,3,6,1:9:351:0,6,0,0,4,3,6,1:0,224,0,0,159,114,237,41:-16.7949,-19.5041,-48.3575,-1.17133,-30.0225,-28.2164,-19.5041,-48.3575,-30.0225,-48.3575,-19.5041,-48.3575,-30.0225,-48.3575,-48.3575,-6.41052,-35.2649,-16.9303,-35.2649,-35.2649,-34.0608,-10.1581,-39.0111,-20.677,-39.0111,-39.0111,-25.9185,-38.108,0,-28.8548,-10.5206,-28.8548,-28.8548,-15.7614,-19.5084,-27.0486,-16.1189,-44.9726,-26.6377,-44.9726,-44.9726,-31.8799,-35.6262,-25.4697,-44.6716 dDocent_Contig_4029 79 . C A 32.9446 . AB=0.153846;ABP=30.0702;AC=1;AF=0.166667;AN=6;AO=4;CIGAR=1X;DP=74;DPB=74;DPRA=1.08333;EPP=11.6962;EPPR=155.013;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=140;QR=2440;RO=70;RPL=4;RPP=11.6962;RPPR=155.013;RPR=0;RUN=1;SAF=4;SAP=11.6962;SAR=0;SRF=70;SRP=155.013;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:37:37,0:37:1314:0:0:0,-11.1381,-118.561 0/0:11:11,0:11:365:0:0:0,-3.31133,-33.1701 0/1:26:22,4:22:761:4:140:-5.11815,0,-60.9833 dDocent_Contig_4030 61 . G A 44.3871 . AB=0.142857;ABP=34.0313;AC=1;AF=0.166667;AN=6;AO=5;CIGAR=1X;DP=122;DPB=122;DPRA=0.918605;EPP=13.8677;EPPR=257.073;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=198;QR=4594;RO=117;RPL=5;RPP=13.8677;RPPR=257.073;RPR=0;RUN=1;SAF=5;SAP=13.8677;SAR=0;SRF=117;SRP=257.073;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:51:50,1:50:1963:1:39:0,-11.456,-172.971 0/0:43:43,0:43:1666:0:0:0,-12.9443,-150.179 0/1:28:24,4:24:965:4:159:-6.2626,0,-78.722 dDocent_Contig_4031 9 . G A 184.751 . AB=0.1625;ABP=82.1605;AC=1;AF=0.166667;AN=6;AO=13;CIGAR=1X;DP=119;DPB=119;DPRA=4.10256;EPP=31.2394;EPPR=233.186;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=486;QR=4078;RO=106;RPL=0;RPP=31.2394;RPPR=233.186;RPR=13;RUN=1;SAF=13;SAP=31.2394;SAR=0;SRF=106;SRP=233.186;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:80:67,13:67:2569:13:486:-19.9979,0,-207.32 0/0:5:5,0:5:195:0:0:0,-1.50515,-17.9242 0/0:34:34,0:34:1314:0:0:0,-10.235,-118.547 dDocent_Contig_4032 61 . C A 55.3551 . AB=0.135135;ABP=45.7942;AC=1;AF=0.166667;AN=6;AO=5;CIGAR=1X;DP=61;DPB=61;DPRA=3.08333;EPP=13.8677;EPPR=124.613;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=198;QR=2271;RO=56;RPL=5;RPP=13.8677;RPPR=124.613;RPR=0;RUN=1;SAF=5;SAP=13.8677;SAR=0;SRF=56;SRP=124.613;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:37:32,5:32:1292:5:198:-7.05839,0,-105.406 0/0:8:8,0:8:325:0:0:0,-2.40824,-29.6196 0/0:16:16,0:16:654:0:0:0,-4.81648,-59.192 dDocent_Contig_4033 30 . C T 46.7886 . AB=0.130435;ABP=57.5803;AC=3;AF=0.5;AN=6;AO=6;CIGAR=1X;DP=46;DPB=46;DPRA=0;EPP=16.0391;EPPR=89.8692;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=235;QR=1608;RO=40;RPL=0;RPP=16.0391;RPPR=89.8692;RPR=6;RUN=1;SAF=6;SAP=16.0391;SAR=0;SRF=40;SRP=89.8692;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:17:14,3:14:570:3:121:-6.16248,0,-46.5245 0/1:10:9,1:9:359:1:41:-1.08427,0,-29.6619 0/1:19:17,2:17:679:2:73:-1.2105,0,-55.719 dDocent_Contig_4034 57 . G A 422.998 . AB=0.170886;ABP=151.66;AC=3;AF=0.5;AN=6;AO=27;CIGAR=2X;DP=158;DPB=158;DPRA=0;EPP=61.6401;EPPR=287.473;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=1048;QR=4858;RO=131;RPL=27;RPP=61.6401;RPPR=287.473;RPR=0;RUN=1;SAF=27;SAP=61.6401;SAR=0;SRF=131;SRP=287.473;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|1:111:97,14:97:3602:14:552:-16.6049,0,-290.869 0|1:30:20,10:20:749:10:381:-25.6108,0,-58.699 0|1:17:14,3:14:507:3:115:-5.60697,0,-40.8466 dDocent_Contig_4035 14 . A G 650.81 . AB=0.214765;ABP=108.305;AC=3;AF=0.5;AN=6;AO=32;CIGAR=1X;DP=149;DPB=149;DPRA=0;EPP=72.4974;EPPR=257.073;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=1271;QR=4667;RO=117;RPL=0;RPP=72.4974;RPPR=257.073;RPR=32;RUN=1;SAF=32;SAP=72.4974;SAR=0;SRF=117;SRP=257.073;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:73:63,10:63:2508:10:401:-14.4738,0,-203.878 0/1:50:35,15:35:1411:15:590:-38.3851,0,-112.192 0/1:26:19,7:19:748:7:280:-17.745,0,-59.8109 dDocent_Contig_4036 18 . C T 1864.46 . AB=0.137931;ABP=36.0317;AC=0;AF=0;AN=6;AO=4;CIGAR=2X;DP=165;DPB=165;DPRA=0;EPP=11.6962;EPPR=207.129;GTI=0;LEN=1;MEANALT=2;MQM=60;MQMR=60;NS=3;NUMALT=2;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=162;QR=3793;RO=94;RPL=0;RPP=11.6962;RPPR=207.129;RPR=4;RUN=1;SAF=4;SAP=11.6962;SAR=0;SRF=94;SRP=207.129;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|0:93:49,0,44:49:1959:0,44:0,1773:-131.782,-146.532,-307.89,0,-161.759,-148.513 0|0:29:16,4,9:16:652:4,9:162,357:-24.5609,-16.0165,-68.6086,0,-40.4334,-51.082 0|0:43:29,0,14:29:1182:0,14:0,536:-35.6259,-44.3558,-141.888,0,-97.9222,-93.7078 dDocent_Contig_4037 69 . C A 796.729 . AB=0.239521;ABP=101.429;AC=3;AF=0.5;AN=6;AO=40;CIGAR=1X;DP=167;DPB=167;DPRA=0;EPP=89.8692;EPPR=278.787;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=1494;QR=4744;RO=127;RPL=40;RPP=89.8692;RPPR=278.787;RPR=0;RUN=1;SAF=40;SAP=89.8692;SAR=0;SRF=127;SRP=278.787;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:101:77,24:77:2930:24:919:-52.622,0,-233.461 0/1:23:15,8:15:549:8:289:-19.4338,0,-42.8218 0/1:43:35,8:35:1265:8:286:-13.14,0,-101.205 dDocent_Contig_4038 107 . N T 32.2769 . AB=0;ABP=0;AC=2;AF=1;AN=2;AO=2;CIGAR=1X;DP=3;DPB=3;DPRA=0;EPP=7.35324;EPPR=0;GTI=0;LEN=1;MEANALT=2;MQM=60;MQMR=0;NS=1;NUMALT=1;ODDS=5.99146;PAIRED=1;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=36;QR=0;RO=0;RPL=0;RPP=7.35324;RPPR=0;RPR=2;RUN=1;SAF=0;SAP=7.35324;SAR=2;SRF=0;SRP=0;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 1/1:3:0,2:0:0:2:36:-3.22635,-0.60206,0 ./.:.:.:.:.:.:.:. ./.:.:.:.:.:.:.:. dDocent_Contig_4039 44 . C A 777.599 . AB=0.313131;ABP=33.038;AC=2;AF=0.333333;AN=6;AO=31;CIGAR=1X;DP=106;DPB=106;DPRA=7.07143;EPP=70.3259;EPPR=101.724;GTI=0;LEN=1;MEANALT=1.5;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=1228;QR=2922;RO=74;RPL=0;RPP=70.3259;RPPR=101.724;RPR=31;RUN=1;SAF=31;SAP=70.3259;SAR=0;SRF=74;SRP=163.699;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:83:56,26:56:2225:26:1029:-67.8109,0,-175.322 0/0:7:7,0:7:254:0:0:0,-2.10721,-23.2021 0/1:16:11,5:11:443:5:199:-13.4719,0,-35.4096 dDocent_Contig_4040 14 . T A 75.3304 . AB=0.145833;ABP=55.3066;AC=2;AF=0.333333;AN=6;AO=7;CIGAR=1X;DP=141;DPB=141;DPRA=0.258065;EPP=18.2106;EPPR=293.988;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=276;QR=5402;RO=134;RPL=0;RPP=18.2106;RPPR=293.988;RPR=7;RUN=1;SAF=7;SAP=18.2106;SAR=0;SRF=134;SRP=293.988;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:93:93,0:93:3734:0:0:0,-27.9958,-336.064 0/1:18:16,2:16:650:2:77:-1.88966,0,-53.4144 0/1:30:25,5:25:1018:5:199:-9.25708,0,-82.88 dDocent_Contig_4041 28 . T C 62.0477 . AB=0.2;ABP=18.6449;AC=1;AF=0.166667;AN=6;AO=8;CIGAR=1X;DP=84;DPB=84;DPRA=0;EPP=20.3821;EPPR=168.042;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=306;QR=2891;RO=76;RPL=0;RPP=20.3821;RPPR=168.042;RPR=8;RUN=1;SAF=8;SAP=20.3821;SAR=0;SRF=76;SRP=168.042;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:41:38,3:38:1462:3:117:0,-1.43202,-120.936 0/0:23:22,1:22:827:1:37:0,-3.22586,-71.0435 0/1:20:16,4:16:602:4:152:-8.02862,0,-48.4896 dDocent_Contig_4042 109 . T C 1876.99 . AB=0.511628;ABP=3.1618;AC=4;AF=0.666667;AN=6;AO=72;CIGAR=1X;DP=135;DPB=135;DPRA=0;EPP=159.356;EPPR=137.642;GTI=0;LEN=1;MEANALT=1.33333;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=2543;QR=2158;RO=62;RPL=0;RPP=159.356;RPPR=137.642;RPR=72;RUN=1;SAF=0;SAP=159.356;SAR=72;SRF=0;SRP=137.642;SRR=62;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:92:50,41:50:1727:41:1458:-104.046,0,-128.235 1/1:6:0,6:0:0:6:215:-19.6992,-1.80618,0 0/1:37:12,25:12:431:25:870:-67.4764,0,-27.9923 dDocent_Contig_4043 8 . G T 2300.85 . AB=0.637795;ABP=23.9556;AC=3;AF=0.5;AN=6;AO=81;CIGAR=1X;DP=127;DPB=127;DPRA=0;EPP=178.9;EPPR=102.898;GTI=0;LEN=1;MEANALT=1;MQM=55.4444;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=0.864198;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=3128;QR=1762;RO=46;RPL=0;RPP=178.9;RPPR=102.898;RPR=81;RUN=1;SAF=81;SAP=178.9;SAR=0;SRF=46;SRP=102.898;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:47:17,30:17:659:30:1154:-85.7714,0,-45.4988 0/1:32:8,24:8:310:24:925:-70.5194,0,-18.6306 0/1:48:21,27:21:793:27:1049:-79.3168,0,-57.2395 dDocent_Contig_4044 11 . C T 2116.4 . AB=0.292994;ABP=119.883;AC=3;AF=0.5;AN=6;AO=92;CIGAR=1X2M1X2M1D1M;DP=314;DPB=302.5;DPRA=0;EPP=202.786;EPPR=478.563;GTI=0;LEN=1;MEANALT=1.66667;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=3452;QR=8419;RO=219;RPL=0;RPP=202.786;RPPR=478.563;RPR=92;RUN=1;SAF=92;SAP=202.786;SAR=0;SRF=219;SRP=478.563;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|1:187:128,57:128:4930:57:2133:-136.117,0,-387.613 0|1:61:39,22:39:1504:22:826:-56.3023,0,-117.269 0|1:66:52,13:52:1985:13:493:-24.7433,0,-158.915 dDocent_Contig_4047 35 . T C 10039.1 . AB=0.63242;ABP=69.7211;AC=3;AF=0.5;AN=6;AO=277;CIGAR=8M1X1M;DP=438;DPB=355.6;DPRA=0;EPP=604.508;EPPR=120.27;GTI=0;LEN=1;MEANALT=3.33333;MQM=60;MQMR=60;NS=3;NUMALT=2;ODDS=5.55112e-17;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=10909;QR=2139;RO=54;RPL=0;RPP=604.508;RPPR=120.27;RPR=277;RUN=1;SAF=277;SAP=604.508;SAR=0;SRF=54;SRP=120.27;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|1:279:33,63,181:33:1304:63,181:2322,7123:-658.494,-478.586,-566.927,-82.5188,0,-135.348 0|1:67:9,17,39:9:360:17,39:572,1542:-140.831,-97.2269,-121.765,-16.6197,0,-34.5524 0|1:92:12,23,57:12:475:23,57:836,2244:-210.112,-145.478,-177.649,-29.1289,0,-51.0757 dDocent_Contig_4048 57 . G T 88.4773 . AB=0.126582;ABP=98.6925;AC=1;AF=0.166667;AN=6;AO=16;CIGAR=1X;DP=214;DPB=214;DPRA=0;EPP=37.7539;EPPR=432.962;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=6.93889e-18;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=599;QR=7789;RO=198;RPL=16;RPP=37.7539;RPPR=432.962;RPR=0;RUN=1;SAF=16;SAP=37.7539;SAR=0;SRF=198;SRP=432.962;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:111:106,5:106:4172:5:183:0,-16.5913,-358.642 0/0:24:23,1:23:914:1:37:0,-3.52689,-78.8691 0/1:79:69,10:69:2703:10:379:-10.6716,0,-219.618 dDocent_Contig_4049 41 . A G 37.5469 . AB=0.285714;ABP=5.80219;AC=1;AF=0.166667;AN=6;AO=5;CIGAR=1X;DP=97;DPB=97;DPRA=3.90909;EPP=13.8677;EPPR=200.614;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=3.46945e-18;PAIRED=0;PAIREDR=0.967033;PAO=0;PQA=0;PQR=0;PRO=0;QA=201;QR=3546;RO=91;RPL=0;RPP=13.8677;RPPR=200.614;RPR=5;RUN=1;SAF=5;SAP=13.8677;SAR=0;SRF=91;SRP=200.614;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:79:76,3:76:2968:3:120:0,-12.5941,-256.029 0/1:7:5,2:5:203:2:81:-5.57852,0,-16.5458 0/0:11:10,0:10:375:0:0:0,-3.0103,-33.6944 dDocent_Contig_4050 12 . C T 1907.08 . AB=0.221662;ABP=270.156;AC=3;AF=0.5;AN=6;AO=88;CIGAR=1X;DP=397;DPB=397;DPRA=0;EPP=194.1;EPPR=673.995;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=3499;QR=12390;RO=309;RPL=0;RPP=194.1;RPPR=673.995;RPR=88;RUN=1;SAF=88;SAP=194.1;SAR=0;SRF=309;SRP=673.995;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:206:173,33:173:6939:33:1340:-58.8439,0,-562.155 0/1:80:56,24:56:2222:24:946:-61.3547,0,-176.067 0/1:111:80,31:80:3229:31:1213:-76.0321,0,-257.242 dDocent_Contig_4051 30 . T A 373.336 . AB=0.208791;ABP=70.0396;AC=3;AF=0.5;AN=6;AO=19;CIGAR=1X;DP=91;DPB=91;DPRA=0;EPP=44.2683;EPPR=159.356;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=768;QR=2888;RO=72;RPL=0;RPP=44.2683;RPPR=159.356;RPR=19;RUN=1;SAF=19;SAP=44.2683;SAR=0;SRF=72;SRP=159.356;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:45:36,9:36:1436:9:362:-19.3973,0,-115.946 0/1:27:20,7:20:805:7:284:-17.8062,0,-64.6371 0/1:19:16,3:16:647:3:122:-5.65292,0,-52.8439 dDocent_Contig_4052 114 . G A 381.952 . AB=0.194631;ABP=123.695;AC=3;AF=0.5;AN=6;AO=29;CIGAR=1X;DP=149;DPB=149;DPRA=0;EPP=65.983;EPPR=263.587;GTI=0;LEN=1;MEANALT=1;MQM=40;MQMR=42.55;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=1006;QR=4115;RO=120;RPL=0;RPP=65.983;RPPR=263.587;RPR=29;RUN=1;SAF=0;SAP=65.983;SAR=29;SRF=0;SRP=263.587;SRR=120;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:82:67,15:67:2312:15:518:-20.7565,0,-177.557 0/1:41:33,8:33:1109:8:278:-12.1946,0,-85.4648 0/1:26:20,6:20:694:6:210:-10.7671,0,-53.8586 dDocent_Contig_4053 35 . A G 123.076 . AB=0.184211;ABP=35.9253;AC=1;AF=0.166667;AN=6;AO=12;CIGAR=1X;DP=218;DPB=218;DPRA=0.473214;EPP=29.068;EPPR=448.162;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=0.166667;PAIREDR=0.834146;PAO=0;PQA=0;PQR=0;PRO=0;QA=484;QR=8133;RO=205;RPL=0;RPP=29.068;RPPR=448.162;RPR=12;RUN=1;SAF=12;SAP=29.068;SAR=0;SRF=205;SRP=448.162;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:112:111,0:111:4430:0:0:0,-33.4143,-398.538 0/1:38:31,7:31:1217:7:280:-14.1315,0,-98.3614 0/0:68:63,5:63:2486:5:204:0,-1.72601,-205.134 dDocent_Contig_4055 14 . C T 807.648 . AB=0.308411;ABP=37.1247;AC=3;AF=0.5;AN=6;AO=33;CIGAR=1X;DP=107;DPB=107;DPRA=0;EPP=74.6689;EPPR=163.699;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=6.93889e-18;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=1304;QR=2941;RO=74;RPL=0;RPP=74.6689;RPPR=163.699;RPR=33;RUN=1;SAF=33;SAP=74.6689;SAR=0;SRF=74;SRP=163.699;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:69:43,26:43:1713:26:1018:-71.1443,0,-133.626 0/1:20:15,5:15:585:5:204:-12.7234,0,-46.9634 0/1:18:16,2:16:643:2:82:-2.36114,0,-52.7858 dDocent_Contig_4057 75 . A T 5418.96 . AB=0.107914;ABP=559.829;AC=0;AF=0;AN=6;AO=45;CIGAR=2M1X1M1X1M;DP=417;DPB=272.333;DPRA=0;EPP=100.727;EPPR=328.731;GTI=0;LEN=1;MEANALT=3.33333;MQM=60;MQMR=60;NS=3;NUMALT=2;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=1680;QR=5521;RO=150;RPL=45;RPP=100.727;RPPR=328.731;RPR=0;RUN=1;SAF=45;SAP=100.727;SAR=0;SRF=150;SRP=328.731;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|0:219:73,18,124:73:2694:18,124:667,4251:-323.068,-290.47,-505.39,0,-165.76,-183.003 0|0:71:28,9,32:28:1049:9,32:347,1035:-75.0139,-54.9346,-138.168,0,-57.4282,-76.2939 0|0:127:49,18,60:49:1778:18,60:666,2025:-149.337,-109.596,-249.372,0,-90.6924,-127.116 dDocent_Contig_4058 54 . C T 52.9629 . AB=0.153846;ABP=43.6001;AC=1;AF=0.166667;AN=6;AO=6;CIGAR=1X;DP=80;DPB=80;DPRA=1.90244;EPP=16.0391;EPPR=161.528;GTI=0;LEN=1;MEANALT=2;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=207;QR=2885;RO=73;RPL=6;RPP=16.0391;RPPR=161.528;RPR=0;RUN=1;SAF=6;SAP=16.0391;SAR=0;SRF=73;SRP=161.528;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:25:25,0:25:994:0:0:0,-7.52575,-89.7586 0/1:39:32,6:32:1255:6:207:-7.12019,0,-101.379 0/0:16:16,0:16:636:0:0:0,-4.81648,-57.5769 dDocent_Contig_4059 187 . C T 129.002 . AB=0.157895;ABP=60.9543;AC=1;AF=0.166667;AN=6;AO=9;CIGAR=1X;DP=83;DPB=83;DPRA=4.38462;EPP=22.5536;EPPR=163.699;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=347;QR=2937;RO=74;RPL=9;RPP=22.5536;RPPR=163.699;RPR=0;RUN=1;SAF=0;SAP=22.5536;SAR=9;SRF=0;SRP=163.699;SRR=74;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:57:48,9:48:1910:9:347:-14.4231,0,-154.943 0/0:9:9,0:9:340:0:0:0,-2.70927,-30.9493 0/0:17:17,0:17:687:0:0:0,-5.11751,-62.1597 dDocent_Contig_4061 60 . T C 85.6823 . AB=0.21875;ABP=24.9965;AC=2;AF=0.333333;AN=6;AO=7;CIGAR=1X;DP=46;DPB=46;DPRA=1.14286;EPP=18.2106;EPPR=87.6977;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=234;QR=1336;RO=39;RPL=7;RPP=18.2106;RPPR=87.6977;RPR=0;RUN=1;SAF=7;SAP=18.2106;SAR=0;SRF=39;SRP=87.6977;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:19:15,4:15:521:4:131:-6.39444,0,-41.5001 0/1:13:10,3:10:342:3:103:-5.69663,0,-27.198 0/0:14:14,0:14:473:0:0:0,-4.21442,-42.8933 dDocent_Contig_4062 13 . T C 90.8797 . AB=0.142857;ABP=57.2971;AC=1;AF=0.166667;AN=6;AO=11;CIGAR=1X;DP=294;DPB=294;DPRA=0.442308;EPP=26.8965;EPPR=617.537;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=6.93889e-18;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=420;QR=11417;RO=283;RPL=0;RPP=26.8965;RPPR=617.537;RPR=11;RUN=1;SAF=11;SAP=26.8965;SAR=0;SRF=283;SRP=617.537;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:156:156,0:156:6314:0:0:0,-46.9607,-567.965 0/1:49:42,7:42:1665:7:281:-10.9119,0,-135.324 0/0:89:85,4:85:3438:4:139:0,-13.9482,-296.593 dDocent_Contig_4063 7 . G A 965.014 . AB=0.467532;ABP=3.71532;AC=3;AF=0.5;AN=6;AO=36;CIGAR=1X;DP=77;DPB=77;DPRA=0;EPP=81.1833;EPPR=89.8692;GTI=0;LEN=1;MEANALT=1.33333;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=6.93889e-18;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=1378;QR=1322;RO=40;RPL=0;RPP=81.1833;RPPR=89.8692;RPR=36;RUN=1;SAF=36;SAP=81.1833;SAR=0;SRF=40;SRP=89.8692;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:42:16,26:16:528:26:1004:-78.0277,0,-35.1816 0/1:12:6,5:6:205:5:184:-13.4535,0,-15.3215 0/1:23:18,5:18:589:5:190:-10.5431,0,-46.3841 dDocent_Contig_4064 34 . A G 128.077 . AB=0.24;ABP=17.6895;AC=1;AF=0.166667;AN=6;AO=6;CIGAR=1X;DP=85;DPB=85;DPRA=0.833333;EPP=16.0391;EPPR=174.557;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=242;QR=3112;RO=79;RPL=0;RPP=16.0391;RPPR=174.557;RPR=6;RUN=1;SAF=6;SAP=16.0391;SAR=0;SRF=79;SRP=174.557;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:52:52,0:52:2055:0:0:0,-15.6536,-185.14 0/1:25:19,6:19:751:6:242:-14.6316,0,-60.3855 0/0:8:8,0:8:306:0:0:0,-2.40824,-27.8946 dDocent_Contig_4065 34 . T C 4811.41 . AB=0.867925;ABP=189.962;AC=4;AF=0.666667;AN=6;AO=154;CIGAR=1X;DP=175;DPB=175;DPRA=0;EPP=337.417;EPPR=48.6112;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=0.961039;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=5910;QR=828;RO=21;RPL=0;RPP=337.417;RPPR=48.6112;RPR=154;RUN=1;SAF=154;SAP=337.417;SAR=0;SRF=21;SRP=48.6112;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:112:16,96:16:631:96:3701:-299.43,0,-23.4101 1/1:16:0,16:0:0:16:598:-54.1484,-4.81648,0 0/1:47:5,42:5:197:42:1611:-131.084,0,-3.95799 dDocent_Contig_4066 64 . T G 122.408 . AB=0.205882;ABP=28.557;AC=1;AF=0.166667;AN=6;AO=10;CIGAR=1X;DP=185;DPB=185;DPRA=0.945312;EPP=24.725;EPPR=383.018;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=379;QR=6996;RO=175;RPL=10;RPP=24.725;RPPR=383.018;RPR=0;RUN=1;SAF=10;SAP=24.725;SAR=0;SRF=175;SRP=383.018;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:87:84,3:84:3356:3:113:0,-15.6503,-291.563 0/1:34:27,7:27:1078:7:266:-14.0647,0,-87.0711 0/0:64:64,0:64:2562:0:0:0,-19.2659,-230.711 dDocent_Contig_4067 42 . C A 2056.01 . AB=0.391753;ABP=22.755;AC=3;AF=0.5;AN=6;AO=76;CIGAR=1X;DP=194;DPB=194;DPRA=0;EPP=168.042;EPPR=259.244;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=2985;QR=4719;RO=118;RPL=0;RPP=168.042;RPPR=259.244;RPR=76;RUN=1;SAF=76;SAP=168.042;SAR=0;SRF=118;SRP=259.244;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:127:81,46:81:3256:46:1795:-123.522,0,-254.853 0/1:28:14,14:14:537:14:566:-42.8535,0,-40.2309 0/1:39:23,16:23:926:16:624:-44.7489,0,-71.9034 dDocent_Contig_4068 16 . T G 81.771 . AB=0.363636;ABP=4.78696;AC=1;AF=0.166667;AN=6;AO=4;CIGAR=1X;DP=68;DPB=68;DPRA=0.385965;EPP=3.0103;EPPR=125.156;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=59.5;NS=3;NUMALT=1;ODDS=0;PAIRED=0;PAIREDR=0.9375;PAO=0;PQA=0;PQR=0;PRO=0;QA=144;QR=2547;RO=64;RPL=0;RPP=11.6962;RPPR=141.985;RPR=4;RUN=1;SAF=2;SAP=3.0103;SAR=2;SRF=62;SRP=125.156;SRR=2;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:37:37,0:37:1468:0:0:0,-11.1381,-132.289 0/1:11:7,4:7:284:4:144:-10.001,0,-22.6225 0/0:20:20,0:20:795:0:0:0,-6.0206,-71.865 dDocent_Contig_4069 21 . A C 432.824 . AB=0.12766;ABP=285.995;AC=2;AF=0.333333;AN=6;AO=30;CIGAR=2M1X3M2D3M;DP=272;DPB=267.636;DPRA=3.17568;EPP=68.1545;EPPR=448.162;GTI=0;LEN=1;MEANALT=4.5;MQM=60;MQMR=60;NS=3;NUMALT=3;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=1186;QR=8123;RO=205;RPL=0;RPP=68.1545;RPPR=448.162;RPR=30;RUN=1;SAF=30;SAP=68.1545;SAR=0;SRF=205;SRP=448.162;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|1:169:119,23,5,20:119:4709:23,5,20:905,196,810:-38.6267,0,-380.641,-58.3331,-371.45,-444.387,-7.6473,-320.774,-379.101,-389.196 0|0:37:36,0,0,1:36:1424:0,0,1:0,0,41:0,-10.8371,-128.015,-10.8371,-128.015,-128.015,-7.04354,-124.631,-124.631,-124.33 0|1:66:50,7,7,1:50:1990:7,7,1:281,278,40:-8.10736,0,-161.755,-0.272353,-140.977,-162.025,-19.8635,-160.567,-160.837,-183.421 dDocent_Contig_4070 69 . C T 179.962 . AB=0.123077;ABP=163.432;AC=1;AF=0.166667;AN=6;AO=17;CIGAR=1X;DP=197;DPB=197;DPRA=1.73864;EPP=39.9253;EPPR=393.875;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=689;QR=7158;RO=180;RPL=17;RPP=39.9253;RPPR=393.875;RPR=0;RUN=1;SAF=17;SAP=39.9253;SAR=0;SRF=180;SRP=393.875;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:130:114,16:114:4549:16:648:-19.519,0,-370.204 0/0:23:22,1:22:871:1:41:0,-2.82912,-74.6037 0/0:44:44,0:44:1738:0:0:0,-13.2453,-156.632 dDocent_Contig_4071 17 . G A 3768.09 . AB=0.467391;ABP=5.55942;AC=3;AF=0.5;AN=6;AO=129;CIGAR=1X;DP=276;DPB=276;DPRA=0;EPP=283.13;EPPR=322.217;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=1.38778e-17;PAIRED=0.968992;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=5164;QR=5856;RO=147;RPL=0;RPP=283.13;RPPR=322.217;RPR=129;RUN=1;SAF=129;SAP=283.13;SAR=0;SRF=147;SRP=322.217;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:167:86,81:86:3431:81:3274:-244.436,0,-258.562 0/1:31:19,12:19:750:12:480:-34.2185,0,-58.4904 0/1:78:42,36:42:1675:36:1410:-103.677,0,-127.498 dDocent_Contig_4072 24 . T C 269.58 . AB=0.232143;ABP=37.909;AC=2;AF=0.333333;AN=6;AO=17;CIGAR=1X;DP=109;DPB=109;DPRA=0;EPP=39.9253;EPPR=200.614;GTI=0;LEN=1;MEANALT=1.33333;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=663;QR=3637;RO=91;RPL=0;RPP=39.9253;RPPR=200.614;RPR=17;RUN=1;SAF=17;SAP=39.9253;SAR=0;SRF=91;SRP=200.614;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:53:48,4:48:1908:4:158:0,-1.45224,-157.322 0/1:24:22,2:22:881:2:82:-0.554958,0,-72.3742 0/1:32:21,11:21:848:11:423:-28.7766,0,-66.9978 dDocent_Contig_4073 12 . G C 823.847 . AB=0.257576;ABP=70.3917;AC=3;AF=0.5;AN=6;AO=34;CIGAR=1X;DP=132;DPB=132;DPRA=0;EPP=76.8404;EPPR=215.815;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=1387;QR=3923;RO=98;RPL=0;RPP=76.8404;RPPR=215.815;RPR=34;RUN=1;SAF=34;SAP=76.8404;SAR=0;SRF=98;SRP=215.815;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:83:60,23:60:2405:23:937:-59.6444,0,-191.615 0/1:25:23,2:23:917:2:82:-0.253928,0,-75.3104 0/1:24:15,9:15:601:9:368:-26.2606,0,-47.2006 dDocent_Contig_4074 107 . N A 442.878 . AB=0;ABP=0;AC=6;AF=1;AN=6;AO=15;CIGAR=1X;DP=15;DPB=15;DPRA=0;EPP=27.4756;EPPR=0;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=0;NS=3;NUMALT=1;ODDS=0;PAIRED=0.933333;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=477;QR=0;RO=0;RPL=0;RPP=35.5824;RPPR=0;RPR=15;RUN=1;SAF=1;SAP=27.4756;SAR=14;SRF=0;SRP=0;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 1/1:1:0,1:0:0:1:35:-3.49863,-0.30103,0 1/1:12:0,12:0:0:12:400:-36.3222,-3.61236,0 1/1:2:0,2:0:0:2:42:-3.9887,-0.60206,0 dDocent_Contig_4076 110 . T A 883.019 . AB=0.436782;ABP=6.03039;AC=3;AF=0.5;AN=6;AO=38;CIGAR=1X;DP=87;DPB=87;DPRA=0;EPP=85.5263;EPPR=105.07;GTI=0;LEN=1;MEANALT=1.66667;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=1317;QR=1627;RO=47;RPL=0;RPP=85.5263;RPPR=105.07;RPR=38;RUN=1;SAF=0;SAP=85.5263;SAR=38;SRF=0;SRP=105.07;SRR=47;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:45:27,16:27:935:16:552:-36.9487,0,-71.4177 0/1:16:6,10:6:210:10:348:-26.8396,0,-14.426 0/1:26:14,12:14:482:12:417:-30.0365,0,-35.8817 dDocent_Contig_4077 58 . A C 2234.01 . AB=0.0992366;ABP=185.762;AC=0;AF=0;AN=6;AO=13;CIGAR=1X1M1X;DP=146;DPB=146;DPRA=0;EPP=31.2394;EPPR=120.27;GTI=0;LEN=1;MEANALT=3;MQM=60;MQMR=60;NS=3;NUMALT=2;ODDS=0;PAIRED=1;PAIREDR=0.981481;PAO=0;PQA=0;PQR=0;PRO=0;QA=512;QR=2083;RO=54;RPL=13;RPP=31.2394;RPPR=120.27;RPR=0;RUN=1;SAF=13;SAP=31.2394;SAR=0;SRF=54;SRP=120.27;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|0:71:36,8,23:36:1376:8,23:310,918:-64.7768,-50.1536,-160.616,0,-87.4146,-105.954 0|0:15:6,0,9:6:240:0,9:0,359:-28.1565,-29.9627,-49.7313,0,-20.1677,-17.4584 0|0:60:12,5,43:12:467:5,43:202,1697:-135.991,-122.949,-159.816,0,-21.7057,-25.4192 dDocent_Contig_4078 19 . A G 7077.43 . AB=0.142857;ABP=282.2;AC=2;AF=0.333333;AN=6;AO=36;CIGAR=1M4D1M1X4M;DP=276;DPB=183.636;DPRA=0;EPP=81.1833;EPPR=50.7827;GTI=0;LEN=1;MEANALT=4.5;MQM=60;MQMR=60;NS=3;NUMALT=2;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=1425;QR=876;RO=22;RPL=0;RPP=81.1833;RPPR=50.7827;RPR=36;RUN=1;SAF=36;SAP=81.1833;SAR=0;SRF=22;SRP=50.7827;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 1|0:171:11,19,134:11:439:19,134:745,5179:-447.098,-389.157,-419.594,-25.096,0,-20.9185 0|0:24:3,0,21:3:119:0,21:0,832:-67.9673,-68.8704,-78.6663,0,-10.1921,-3.87046 1|0:81:8,17,54:8:318:17,54:680,2080:-198.199,-144.589,-165.655,-29.8488,0,-39.7782 dDocent_Contig_4080 20 . C T 32.4163 . AB=0.0967742;ABP=178.129;AC=2;AF=0.333333;AN=6;AO=13;CIGAR=1X;DP=171;DPB=171;DPRA=0;EPP=31.2394;EPPR=346.103;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=6.93889e-18;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=521;QR=6309;RO=158;RPL=0;RPP=31.2394;RPPR=346.103;RPR=13;RUN=1;SAF=13;SAP=31.2394;SAR=0;SRF=158;SRP=346.103;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:117:106,11:106:4222:11:439:-4.64245,0,-344.723 0/1:7:6,1:6:239:1:41:-1.98736,0,-19.7767 0/0:47:46,1:46:1848:1:41:0,-10.0538,-162.428 dDocent_Contig_4081 7 . A G 156.523 . AB=0.384615;ABP=6.01695;AC=2;AF=0.333333;AN=6;AO=10;CIGAR=1X;DP=48;DPB=48;DPRA=0.590909;EPP=24.725;EPPR=85.5263;GTI=0;LEN=1;MEANALT=1;MQM=58.8;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=0.9;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=294;QR=1449;RO=38;RPL=0;RPP=24.725;RPPR=85.5263;RPR=10;RUN=1;SAF=10;SAP=24.725;SAR=0;SRF=38;SRP=85.5263;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:22:22,0:22:852:0:0:0,-6.62266,-77.0025 0/1:14:8,6:8:305:6:201:-14.1887,0,-23.5954 0/1:12:8,4:8:292:4:93:-4.98634,0,-23.015 dDocent_Contig_4083 132 . C T 168.464 . AB=0.25;ABP=29.068;AC=2;AF=0.333333;AN=6;AO=13;CIGAR=1X;DP=62;DPB=62;DPRA=0;EPP=31.2394;EPPR=109.412;GTI=0;LEN=1;MEANALT=1;MQM=59.1538;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=0;PAIREDR=0.816327;PAO=0;PQA=0;PQR=0;PRO=0;QA=415;QR=1575;RO=49;RPL=0;RPP=31.2394;RPPR=109.412;RPR=13;RUN=1;SAF=0;SAP=31.2394;SAR=13;SRF=0;SRP=109.412;SRR=49;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:22:14,8:14:455:8:257:-16.8176,0,-34.638 0/1:26:22,4:22:679:4:123:-3.54734,0,-53.5741 0/0:14:13,1:13:441:1:35:0,-0.715791,-36.5173 dDocent_Contig_4085 27 . T A 3980.98 . AB=0.802548;ABP=127.835;AC=3;AF=0.5;AN=6;AO=126;CIGAR=1X;DP=157;DPB=157;DPRA=0;EPP=276.616;EPPR=70.3259;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=5002;QR=1247;RO=31;RPL=0;RPP=276.616;RPPR=70.3259;RPR=126;RUN=1;SAF=126;SAP=276.616;SAR=0;SRF=31;SRP=70.3259;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:97:9,88:9:368:88:3495:-285.391,0,-4.28544 0/1:16:2,14:2:82:14:551:-45.1152,0,-2.9632 0/1:44:20,24:20:797:24:956:-73.0979,0,-58.8026 dDocent_Contig_4087 43 . A C 758.778 . AB=0.376623;ABP=13.1908;AC=3;AF=0.5;AN=6;AO=29;CIGAR=1X;DP=77;DPB=77;DPRA=0;EPP=65.983;EPPR=107.241;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=1150;QR=1782;RO=48;RPL=0;RPP=65.983;RPPR=107.241;RPR=29;RUN=1;SAF=29;SAP=65.983;SAR=0;SRF=48;SRP=107.241;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:49:34,15:34:1258:15:591:-38.7808,0,-98.7506 0/1:8:3,5:3:118:5:196:-15.6063,0,-8.59448 0/1:20:11,9:11:406:9:363:-27.0137,0,-30.8639 dDocent_Contig_4088 67 . G A 1939.41 . AB=0.349558;ABP=47.439;AC=3;AF=0.5;AN=6;AO=79;CIGAR=1X;DP=226;DPB=226;DPRA=0;EPP=174.557;EPPR=322.217;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=1.38778e-17;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=2962;QR=5539;RO=147;RPL=79;RPP=174.557;RPPR=322.217;RPR=0;RUN=1;SAF=79;SAP=174.557;SAR=0;SRF=147;SRP=322.217;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:114:66,48:66:2546:48:1812:-129.006,0,-195.018 0/1:64:44,20:44:1671:20:744:-48.0193,0,-131.39 0/1:48:37,11:37:1322:11:406:-22.4383,0,-104.825 dDocent_Contig_4089 11 . C A 1487.63 . AB=0.273128;ABP=104.496;AC=3;AF=0.5;AN=6;AO=62;CIGAR=1X;DP=227;DPB=227;DPRA=0;EPP=137.642;EPPR=361.303;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=57.3333;NS=3;NUMALT=1;ODDS=1.38778e-17;PAIRED=1;PAIREDR=0.70303;PAO=0;PQA=0;PQR=0;PRO=0;QA=2463;QR=6663;RO=165;RPL=0;RPP=137.642;RPPR=361.303;RPR=62;RUN=1;SAF=62;SAP=137.642;SAR=0;SRF=165;SRP=361.303;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:111:83,28:83:3374:28:1103:-66.1416,0,-253.746 0/1:67:47,20:47:1874:20:796:-51.7906,0,-148.691 0/1:49:35,14:35:1415:14:564:-36.3533,0,-108.155 dDocent_Contig_4090 38 . G T 143.757 . AB=0.285714;ABP=11.386;AC=1;AF=0.166667;AN=6;AO=7;CIGAR=1X;DP=60;DPB=60;DPRA=0.7;EPP=18.2106;EPPR=118.098;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=287;QR=2081;RO=53;RPL=0;RPP=18.2106;RPPR=118.098;RPR=7;RUN=1;SAF=7;SAP=18.2106;SAR=0;SRF=53;SRP=118.098;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:25:25,0:25:980:0:0:0,-7.52575,-88.4975 0/1:21:15,6:15:579:6:246:-16.1985,0,-46.1227 0/0:14:13,1:13:522:1:41:0,-0.119853,-43.2316 dDocent_Contig_4091 12 . G A 873.367 . AB=0.137787;ABP=548.866;AC=3;AF=0.5;AN=6;AO=66;CIGAR=1X;DP=479;DPB=479;DPRA=0;EPP=137.773;EPPR=816.857;GTI=0;LEN=1;MEANALT=1.66667;MQM=57.8939;MQMR=59.4585;NS=3;NUMALT=1;ODDS=0;PAIRED=0.757576;PAIREDR=0.412195;PAO=0;PQA=0;PQR=0;PRO=0;QA=2634;QR=16071;RO=410;RPL=0;RPP=146.327;RPPR=893.314;RPR=66;RUN=1;SAF=65;SAP=137.773;SAR=1;SRF=401;SRP=816.857;SRR=9;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:186:161,23:161:6366:23:936:-27.94,0,-514.734 0/1:160:139,20:139:5397:20:794:-23.344,0,-437.161 0/1:133:110,23:110:4308:23:904:-41.5755,0,-347.646 dDocent_Contig_4092 17 . G A 1801.76 . AB=0.290837;ABP=98.3907;AC=3;AF=0.5;AN=6;AO=73;CIGAR=1X;DP=251;DPB=251;DPRA=0;EPP=161.528;EPPR=389.532;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=2893;QR=7061;RO=178;RPL=0;RPP=161.528;RPPR=389.532;RPR=73;RUN=1;SAF=73;SAP=161.528;SAR=0;SRF=178;SRP=389.532;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:135:92,43:92:3670:43:1703:-112.851,0,-289.682 0/1:36:27,9:27:1053:9:358:-21.7463,0,-84.2189 0/1:80:59,21:59:2338:21:832:-51.1015,0,-186.493 dDocent_Contig_4093 39 . T A 9108.05 . AB=0.722222;ABP=172.868;AC=3;AF=0.5;AN=6;AO=286;CIGAR=8M1X1M;DP=396;DPB=395.3;DPRA=0;EPP=624.051;EPPR=157.185;GTI=0;LEN=1;MEANALT=4.66667;MQM=60;MQMR=60;NS=3;NUMALT=2;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=11388;QR=2797;RO=71;RPL=0;RPP=624.051;RPPR=157.185;RPR=286;RUN=1;SAF=286;SAP=624.051;SAR=0;SRF=71;SRP=157.185;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|1:159:22,0,123:22:877:0,123:0,4926:-399.186,-405.808,-478.029,0,-72.2285,-35.2018 0|1:168:35,9,109:35:1381:9,109:347,4320:-345.047,-327.091,-438.009,0,-85.154,-80.8357 0|1:69:14,0,54:14:539:0,54:0,2142:-172.095,-176.309,-220.558,0,-44.2367,-27.9811 dDocent_Contig_4094 30 . A T 147.625 . AB=0.333333;ABP=7.35324;AC=1;AF=0.166667;AN=6;AO=8;CIGAR=1X;DP=60;DPB=60;DPRA=0;EPP=20.3821;EPPR=115.927;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=317;QR=2024;RO=52;RPL=0;RPP=20.3821;RPPR=115.927;RPR=8;RUN=1;SAF=8;SAP=20.3821;SAR=0;SRF=52;SRP=115.927;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:18:12,6:12:455:6:237:-16.2851,0,-35.8749 0/0:16:15,1:15:576:1:40:0,-0.820801,-48.18 0/0:26:25,1:25:993:1:40:0,-3.8311,-85.6754 dDocent_Contig_4095 12 . A G 135.686 . AB=0.132075;ABP=127.645;AC=3;AF=0.5;AN=6;AO=14;CIGAR=1X;DP=106;DPB=106;DPRA=0;EPP=33.4109;EPPR=202.786;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=554;QR=3641;RO=92;RPL=0;RPP=33.4109;RPPR=202.786;RPR=14;RUN=1;SAF=14;SAP=33.4109;SAR=0;SRF=92;SRP=202.786;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:56:50,6:50:1978:6:233:-4.48066,0,-161.355 0/1:32:27,5:27:1066:5:198:-8.56404,0,-86.6003 0/1:18:15,3:15:597:3:123:-6.04625,0,-48.6489 dDocent_Contig_4096 18 . A T 32.1474 . AB=0.137931;ABP=36.0317;AC=1;AF=0.166667;AN=6;AO=18;CIGAR=1X;DP=269;DPB=269;DPRA=0;EPP=42.0968;EPPR=548.05;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=0.956175;PAO=0;PQA=0;PQR=0;PRO=0;QA=699;QR=9955;RO=251;RPL=0;RPP=42.0968;RPPR=548.05;RPR=18;RUN=1;SAF=18;SAP=42.0968;SAR=0;SRF=251;SRP=548.05;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:159:151,8:151:6024:8:311:0,-19.5169,-513.607 0/1:29:25,4:25:967:4:149:-5.03838,0,-78.605 0/0:81:75,6:75:2964:6:239:0,-2.49954,-244.985 dDocent_Contig_4097 15 . C T 48.0569 . AB=0.142857;ABP=34.0313;AC=1;AF=0.166667;AN=6;AO=5;CIGAR=1X2M1X;DP=97;DPB=97;DPRA=5.5625;EPP=13.8677;EPPR=202.786;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=204;QR=3680;RO=92;RPL=0;RPP=13.8677;RPPR=202.786;RPR=5;RUN=1;SAF=5;SAP=13.8677;SAR=0;SRF=92;SRP=202.786;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|0:61:60,1:60:2412:1:41:0,-14.2683,-213.137 0|0:8:8,0:8:320:0:0:0,-2.40824,-29.168 0|1:28:24,4:24:948:4:163:-6.62959,0,-77.1933 dDocent_Contig_4098 88 . T A 1145.3 . AB=0.547619;ABP=4.66476;AC=3;AF=0.5;AN=6;AO=46;CIGAR=4M1I1M1X;DP=84;DPB=92;DPRA=0;EPP=102.898;EPPR=81.1833;GTI=0;LEN=1;MEANALT=1.33333;MQM=60;MQMR=60;NS=3;NUMALT=2;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=1601;QR=1226;RO=36;RPL=46;RPP=102.898;RPPR=81.1833;RPR=0;RUN=1;SAF=46;SAP=102.898;SAR=0;SRF=36;SRP=81.1833;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|1:39:25,0,14:25:865:0,14:0,489:-32.6016,-40.1274,-110.421,0,-70.6418,-66.4274 0|1:25:6,0,19:6:191:0,19:0,659:-52.1083,-53.9145,-69.286,0,-15.6966,-9.97699 0|1:20:5,2,13:5:170:2,13:68,453:-35.3432,-31.3335,-44.519,0,-8.27392,-9.87646 dDocent_Contig_4099 13 . G A 2870.64 . AB=0.744;ABP=67.6507;AC=3;AF=0.5;AN=6;AO=93;CIGAR=1X;DP=125;DPB=125;DPRA=0;EPP=204.957;EPPR=72.4974;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=6.93889e-18;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=3660;QR=1253;RO=32;RPL=0;RPP=204.957;RPPR=72.4974;RPR=93;RUN=1;SAF=93;SAP=204.957;SAR=0;SRF=32;SRP=72.4974;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:36:9,27:9:362:27:1051:-84.0372,0,-22.106 0/1:62:17,45:17:652:45:1788:-142.476,0,-40.3425 0/1:27:6,21:6:239:21:821:-66.0742,0,-13.7554 dDocent_Contig_4100 32 . A G 126.147 . AB=0.357143;ABP=5.49198;AC=1;AF=0.166667;AN=6;AO=5;CIGAR=1X1M1X;DP=67;DPB=67;DPRA=0.528302;EPP=13.8677;EPPR=137.642;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=203;QR=2450;RO=62;RPL=0;RPP=13.8677;RPPR=137.642;RPR=5;RUN=1;SAF=5;SAP=13.8677;SAR=0;SRF=62;SRP=137.642;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|0:36:36,0:36:1421:0:0:0,-10.8371,-128.144 0|0:17:17,0:17:672:0:0:0,-5.11751,-60.8096 0|1:14:9,5:9:357:5:203:-14.4386,0,-28.2778 dDocent_Contig_4101 93 . G T 161.285 . AB=0.22;ABP=37.059;AC=2;AF=0.333333;AN=6;AO=12;CIGAR=1X3M1X;DP=149;DPB=149;DPRA=0;EPP=29.068;EPPR=298.331;GTI=0;LEN=1;MEANALT=1.33333;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=411;QR=4417;RO=136;RPL=12;RPP=29.068;RPPR=298.331;RPR=0;RUN=1;SAF=12;SAP=29.068;SAR=0;SRF=136;SRP=298.331;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|0:99:98,1:98:3193:1:35:0,-26.3033,-284.121 0|1:23:16,6:16:535:6:207:-12.2363,0,-41.7617 0|1:27:22,5:22:689:5:169:-7.41511,0,-54.1815 dDocent_Contig_4102 10 . T C 180.043 . AB=0.127119;ABP=145.518;AC=1;AF=0.166667;AN=6;AO=19;CIGAR=1X;DP=227;DPB=227;DPRA=0;EPP=44.2683;EPPR=452.505;GTI=0;LEN=1;MEANALT=1.33333;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=770;QR=8305;RO=207;RPL=0;RPP=44.2683;RPPR=452.505;RPR=19;RUN=1;SAF=19;SAP=44.2683;SAR=0;SRF=207;SRP=452.505;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:118:102,15:102:4116:15:609:-19.5271,0,-334.78 0/0:69:66,3:66:2622:3:121:0,-9.49087,-224.829 0/0:40:39,1:39:1567:1:40:0,-8.04552,-137.267 dDocent_Contig_4103 60 . C T 276.718 . AB=0.20339;ABP=48.096;AC=3;AF=0.5;AN=6;AO=12;CIGAR=1X3M4I2M;DP=68;DPB=81.8333;DPRA=0;EPP=29.068;EPPR=111.584;GTI=0;LEN=1;MEANALT=2;MQM=60;MQMR=60;NS=3;NUMALT=2;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=463;QR=1974;RO=50;RPL=12;RPP=29.068;RPPR=111.584;RPR=0;RUN=1;SAF=12;SAP=29.068;SAR=0;SRF=50;SRP=111.584;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|1:38:29,2,6:29:1141:2,6:70,232:-10.3443,-13.3884,-106.646,0,-88.1925,-92.0773 0|1:9:6,3,0:6:239:3,0:115,0:-8.01546,0,-19.1761,-9.82164,-20.0792,-29.5128 0|1:21:15,0,6:15:594:0,6:0,231:-14.835,-19.3505,-68.2478,0,-49.2852,-47.479 dDocent_Contig_4105 10 . T C 8232.94 . AB=0.0804598;ABP=136.019;AC=0;AF=0;AN=6;AO=7;CIGAR=1X2M2X;DP=278;DPB=278;DPRA=0.910995;EPP=18.2106;EPPR=48.6112;GTI=0;LEN=1;MEANALT=2;MQM=60;MQMR=60;NS=3;NUMALT=2;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=273;QR=834;RO=21;RPL=0;RPP=18.2106;RPPR=48.6112;RPR=7;RUN=1;SAF=7;SAP=18.2106;SAR=0;SRF=21;SRP=48.6112;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|0:120:6,0,111:6:241:0,111:0,4406:-374.416,-376.222,-396.082,-13.5517,-33.4143,0 0|0:87:11,7,69:11:435:7,69:273,2742:-222.426,-203.299,-236.99,0,-13.3649,-15.031 0|0:71:4,0,67:4:158:0,67:0,2694:-227.975,-229.179,-242.18,-6.77265,-20.169,0 dDocent_Contig_4106 13 . G A 9001.57 . AB=0.835294;ABP=335.016;AC=3;AF=0.5;AN=6;AO=284;CIGAR=1X;DP=340;DPB=340;DPRA=0;EPP=619.708;EPPR=124.613;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=1.38778e-17;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=11199;QR=2206;RO=56;RPL=0;RPP=619.708;RPPR=124.613;RPR=284;RUN=1;SAF=284;SAP=619.708;SAR=0;SRF=56;SRP=124.613;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:230:35,195:35:1378:195:7706:-623.97,0,-55.0442 0/1:31:7,24:7:280:24:936:-75.2143,0,-16.2385 0/1:79:14,65:14:548:65:2557:-206.496,0,-25.8752 dDocent_Contig_4107 10 . G A 65.1424 . AB=0.133333;ABP=55.5599;AC=1;AF=0.166667;AN=6;AO=6;CIGAR=1X;DP=158;DPB=158;DPRA=0.79646;EPP=16.0391;EPPR=333.074;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=239;QR=6005;RO=152;RPL=0;RPP=16.0391;RPPR=333.074;RPR=6;RUN=1;SAF=6;SAP=16.0391;SAR=0;SRF=152;SRP=333.074;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:74:74,0:74:2941:0:0:0,-22.2762,-264.794 0/1:45:39,6:39:1527:6:239:-8.33815,0,-124.137 0/0:39:39,0:39:1537:0:0:0,-11.7402,-138.57 dDocent_Contig_4108 9 . C A 157.402 . AB=0.2;ABP=42.0968;AC=2;AF=0.333333;AN=6;AO=11;CIGAR=2X;DP=96;DPB=96;DPRA=0;EPP=26.8965;EPPR=185.414;GTI=0;LEN=1;MEANALT=1.33333;MQM=60;MQMR=57;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=0.785714;PAO=0;PQA=0;PQR=0;PRO=0;QA=413;QR=3263;RO=84;RPL=0;RPP=26.8965;RPPR=185.414;RPR=11;RUN=1;SAF=11;SAP=26.8965;SAR=0;SRF=84;SRP=185.414;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|0:46:45,1:45:1763:1:39:0,-9.95081,-148.206 0|1:26:18,7:18:676:7:271:-16.823,0,-53.2208 0|1:24:21,3:21:824:3:103:-2.38399,0,-67.2552 dDocent_Contig_4109 32 . A G 1113.93 . AB=0.34127;ABP=30.5846;AC=3;AF=0.5;AN=6;AO=43;CIGAR=7M1X8M;DP=126;DPB=122.5;DPRA=0;EPP=96.3836;EPPR=161.528;GTI=0;LEN=1;MEANALT=2.33333;MQM=60;MQMR=60;NS=3;NUMALT=3;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=1684;QR=2849;RO=73;RPL=0;RPP=96.3836;RPPR=161.528;RPR=43;RUN=1;SAF=43;SAP=96.3836;SAR=0;SRF=73;SRP=161.528;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|1:77:53,4,1,18:53:2060:4,1,18:130,40,688:-40.5147,-45.9903,-214.057,-53.1731,-211.966,-222.15,0,-158.823,-166.011,-163.888 0|1:24:6,0,0,18:6:237:0,0,18:0,0,717:-57.6321,-59.4383,-78.9402,-59.4383,-78.9402,-78.9402,0,-19.8973,-19.8973,-14.4788 0|1:25:14,0,4,7:14:552:0,4,7:0,154,279:-18.7686,-22.983,-68.4004,-10.3434,-55.7576,-54.5535,0,-45.4242,-32.7818,-43.317 dDocent_Contig_4111 58 . C G 600.871 . AB=0.199005;ABP=161.182;AC=2;AF=0.333333;AN=6;AO=40;CIGAR=1X;DP=216;DPB=216;DPRA=6.7;EPP=89.8692;EPPR=385.189;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=1372;QR=6123;RO=176;RPL=40;RPP=89.8692;RPPR=385.189;RPR=0;RUN=1;SAF=40;SAP=89.8692;SAR=0;SRF=176;SRP=385.189;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:144:120,24:120:4165:24:835:-32.1203,0,-331.707 0/0:15:15,0:15:528:0:0:0,-4.51545,-47.8519 0/1:57:41,16:41:1430:16:537:-31.4897,0,-111.841 dDocent_Contig_4112 59 . A T 62.3727 . AB=0.272727;ABP=7.94546;AC=1;AF=0.166667;AN=6;AO=3;CIGAR=1X;DP=40;DPB=40;DPRA=0.758621;EPP=9.52472;EPPR=83.3548;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=0;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=122;QR=1477;RO=37;RPL=3;RPP=9.52472;RPPR=83.3548;RPR=0;RUN=1;SAF=3;SAP=9.52472;SAR=0;SRF=37;SRP=83.3548;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:22:22,0:22:873:0:0:0,-6.62266,-78.8754 0/0:7:7,0:7:281:0:0:0,-2.10721,-25.662 0/1:11:8,3:8:323:3:122:-8.06116,0,-26.1273 dDocent_Contig_4113 7 . A T 250.306 . AB=0.0789474;ABP=61.5258;AC=0;AF=0;AN=6;AO=3;CIGAR=1X2M1X;DP=58;DPB=58;DPRA=0.95;EPP=9.52472;EPPR=87.6977;GTI=0;LEN=1;MEANALT=2.5;MQM=30;MQMR=60;NS=3;NUMALT=3;ODDS=0;PAIRED=1;PAIREDR=0.948718;PAO=0;PQA=0;PQR=0;PRO=0;QA=116;QR=1496;RO=39;RPL=0;RPP=9.52472;RPPR=87.6977;RPR=3;RUN=1;SAF=3;SAP=9.52472;SAR=0;SRF=39;SRP=87.6977;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|0:24:13,1,7,3:13:502:1,7,3:39,268,120:-18.1143,-21.2738,-62.2012,0,-40.51,-39.1652,-12.1291,-52.6153,-31.3816,-52.4778 0|0:20:18,0,1,1:18:682:0,1,1:0,39,36:0,-5.41854,-61.335,-2.1974,-58.1285,-57.8275,-2.50255,-58.4047,-55.1983,-58.1037 0|0:14:8,2,4,0:8:312:2,4,0:77,156,0:-10.4391,-7.09105,-32.136,0,-19.9146,-24.4715,-12.8473,-32.7381,-25.6756,-38.5012 dDocent_Contig_4114 107 . N A 79.3215 . AB=0;ABP=0;AC=2;AF=1;AN=2;AO=3;CIGAR=1X;DP=3;DPB=3;DPRA=0;EPP=9.52472;EPPR=0;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=0;NS=1;NUMALT=1;ODDS=6.68461;PAIRED=1;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=85;QR=0;RO=0;RPL=0;RPP=9.52472;RPPR=0;RPR=3;RUN=1;SAF=0;SAP=9.52472;SAR=3;SRF=0;SRP=0;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL ./.:.:.:.:.:.:.:. 1/1:3:0,3:0:0:3:85:-7.93161,-0.90309,0 ./.:.:.:.:.:.:.:. dDocent_Contig_4115 7 . G A 638.799 . AB=0.217105;ABP=108.67;AC=3;AF=0.5;AN=6;AO=33;CIGAR=1X;DP=152;DPB=152;DPRA=0;EPP=74.6689;EPPR=254.901;GTI=0;LEN=1;MEANALT=2;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=1261;QR=3775;RO=116;RPL=0;RPP=74.6689;RPPR=254.901;RPR=33;RUN=1;SAF=33;SAP=74.6689;SAR=0;SRF=116;SRP=254.901;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:57:44,12:44:1340:12:462:-24.9423,0,-103.875 0/1:63:52,9:52:1804:9:349:-13.2475,0,-144.136 0/1:32:20,12:20:631:12:450:-31.213,0,-47.4424 dDocent_Contig_4116 98 . N T 64.5902 . AB=0;ABP=0;AC=2;AF=1;AN=2;AO=2;CIGAR=1X;DP=2;DPB=2;DPRA=0;EPP=7.35324;EPPR=0;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=0;NS=1;NUMALT=1;ODDS=5.99146;PAIRED=1;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=68;QR=0;RO=0;RPL=2;RPP=7.35324;RPPR=0;RPR=0;RUN=1;SAF=2;SAP=7.35324;SAR=0;SRF=0;SRP=0;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL ./.:.:.:.:.:.:.:. 1/1:2:0,2:0:0:2:68:-6.45793,-0.60206,0 ./.:.:.:.:.:.:.:. dDocent_Contig_4117 112 . A C 109.492 . AB=0.454545;ABP=3.20771;AC=1;AF=0.166667;AN=6;AO=9;CIGAR=2X;DP=75;DPB=75;DPRA=1.20455;EPP=22.5536;EPPR=146.327;GTI=0;LEN=1;MEANALT=1;MQM=56;MQMR=59.3939;NS=3;NUMALT=1;ODDS=0;PAIRED=0;PAIREDR=0.984848;PAO=0;PQA=0;PQR=0;PRO=0;QA=303;QR=2271;RO=66;RPL=0;RPP=22.5536;RPPR=146.327;RPR=9;RUN=1;SAF=0;SAP=22.5536;SAR=9;SRF=0;SRP=146.327;SRR=66;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|0:42:38,4:38:1275:4:128:0,-0.811386,-101.928 0|1:11:6,5:6:214:5:175:-12.7729,0,-16.2965 0|0:22:22,0:22:782:0:0:0,-6.62266,-70.7038 dDocent_Contig_4118 39 . A G 50.3431 . AB=0.2;ABP=14.7363;AC=1;AF=0.166667;AN=6;AO=6;CIGAR=1X;DP=65;DPB=65;DPRA=0;EPP=16.0391;EPPR=131.127;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=234;QR=2314;RO=59;RPL=0;RPP=16.0391;RPPR=131.127;RPR=6;RUN=1;SAF=6;SAP=16.0391;SAR=0;SRF=59;SRP=131.127;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:27:26,1:26:999:1:40:0,-4.13213,-86.2018 0/1:15:12,3:12:482:3:122:-6.85704,0,-39.2145 0/0:23:21,2:21:833:2:72:0,-0.0893696,-68.4418 dDocent_Contig_4120 8 . C T 401.728 . AB=0.0782609;ABP=180.675;AC=1;AF=0.166667;AN=6;AO=9;CIGAR=1M1X5M;DP=161;DPB=160;DPRA=1.25;EPP=22.5536;EPPR=254.901;GTI=0;LEN=1;MEANALT=4.5;MQM=60;MQMR=60;NS=3;NUMALT=5;ODDS=1.38778e-17;PAIRED=0.666667;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=347;QR=4507;RO=116;RPL=0;RPP=22.5536;RPPR=254.901;RPR=9;RUN=1;SAF=9;SAP=22.5536;SAR=0;SRF=116;SRP=254.901;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|1:71:53,0,8,4,4,1:53:2048:0,8,4,4,1:0,310,156,154,41:-7.45001,-23.4046,-191.626,0,-168.224,-165.816,-10.68,-178.909,-155.507,-177.705,-10.7524,-178.981,-155.579,-166.264,-177.777,-20.1724,-188.395,-164.994,-175.679,-175.75,-188.094 0|0:44:21,3,2,0,5,13:21:815:3,2,0,5,13:84,77,0,193,527:-36.2456,-36.7405,-102.799,-36.7401,-97.8755,-103.108,-42.5673,-103.702,-103.711,-109.538,-26.7129,-87.8524,-87.8593,-93.6867,-92.1815,0,-61.1641,-61.1685,-66.996,-51.1429,-63.0826 0|0:46:42,0,0,2,0,1:42:1644:0,0,2,0,1:0,0,73,0,41:0,-12.6433,-147.841,-12.6433,-147.841,-147.841,-6.71794,-141.911,-141.911,-141.309,-12.6433,-147.841,-147.841,-141.911,-147.841,-9.40547,-144.611,-144.611,-138.68,-144.611,-144.31 dDocent_Contig_4121 95 . A G 103.406 . AB=0.225;ABP=29.2851;AC=2;AF=0.333333;AN=6;AO=9;CIGAR=1X;DP=64;DPB=64;DPRA=0.833333;EPP=22.5536;EPPR=122.441;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=281;QR=1862;RO=55;RPL=9;RPP=22.5536;RPPR=122.441;RPR=0;RUN=1;SAF=9;SAP=22.5536;SAR=0;SRF=55;SRP=122.441;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:24:18,6:18:606:6:193:-10.4623,0,-47.6331 0/1:16:13,3:13:438:3:88:-3.39539,0,-34.9271 0/0:24:24,0:24:818:0:0:0,-7.22472,-73.9354 dDocent_Contig_4122 149 . A T 2446.96 . AB=0.720721;ABP=49.9806;AC=3;AF=0.5;AN=6;AO=80;CIGAR=1X;DP=111;DPB=111;DPRA=0;EPP=176.728;EPPR=70.3259;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=6.93889e-18;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=3142;QR=1237;RO=31;RPL=0;RPP=176.728;RPPR=70.3259;RPR=80;RUN=1;SAF=0;SAP=176.728;SAR=80;SRF=0;SRP=70.3259;SRR=31;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:70:20,50:20:802:50:1968:-156.241,0,-51.4245 0/1:13:5,8:5:194:8:315:-24.7994,0,-13.9142 0/1:28:6,22:6:241:22:859:-69.1788,0,-13.6375 dDocent_Contig_4123 26 . C A 148.151 . AB=0.161765;ABP=70.5814;AC=2;AF=0.333333;AN=6;AO=11;CIGAR=1X;DP=166;DPB=166;DPRA=0.346939;EPP=26.8965;EPPR=339.589;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=3.46945e-18;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=423;QR=6103;RO=155;RPL=0;RPP=26.8965;RPPR=339.589;RPR=11;RUN=1;SAF=11;SAP=26.8965;SAR=0;SRF=155;SRP=339.589;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:98:98,0:98:3873:0:0:0,-29.5009,-348.587 0/1:23:19,4:19:739:4:156:-7.49313,0,-59.9145 0/1:45:38,7:38:1491:7:267:-10.8448,0,-120.899 dDocent_Contig_4124 98 . N G 206.466 . AB=0;ABP=0;AC=4;AF=1;AN=4;AO=7;CIGAR=2X;DP=7;DPB=21;DPRA=0;EPP=18.2106;EPPR=0;GTI=0;LEN=1;MEANALT=1;MQM=52;MQMR=0;NS=2;NUMALT=1;ODDS=0;PAIRED=0.714286;PAIREDR=0;PAO=23;PQA=726;PQR=0;PRO=0;QA=235;QR=0;RO=0;RPL=7;RPP=18.2106;RPPR=0;RPR=0;RUN=1;SAF=7;SAP=18.2106;SAR=0;SRF=0;SRP=0;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 1|1:4:0,4:0:0:4:132:-11.8897,-1.20412,0 .:.:.:.:.:.:.:. 1|1:3:0,3:0:0:3:103:-8.45547,-0.90309,0 dDocent_Contig_4125 11 . T G 258.036 . AB=0.145038;ABP=146.377;AC=2;AF=0.333333;AN=6;AO=22;CIGAR=1X;DP=183;DPB=183;DPRA=0;EPP=50.7827;EPPR=352.617;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=871;QR=6458;RO=161;RPL=0;RPP=50.7827;RPPR=352.617;RPR=22;RUN=1;SAF=22;SAP=50.7827;SAR=0;SRF=161;SRP=352.617;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:83:75,8:75:3012:8:316:-3.81856,0,-246.17 0/1:48:37,11:37:1476:11:440:-25.5057,0,-118.633 0/0:52:49,3:49:1970:3:115:0,-4.93117,-166.769 dDocent_Contig_4126 19 . A T 78.9248 . AB=0.25;ABP=11.6962;AC=1;AF=0.166667;AN=6;AO=4;CIGAR=1X;DP=30;DPB=30;DPRA=2.28571;EPP=11.6962;EPPR=59.4686;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=0.884615;PAO=0;PQA=0;PQR=0;PRO=0;QA=154;QR=996;RO=26;RPL=0;RPP=11.6962;RPPR=59.4686;RPR=4;RUN=1;SAF=4;SAP=11.6962;SAR=0;SRF=26;SRP=59.4686;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:16:12,4:12:448:4:154:-9.41531,0,-35.8317 0/0:5:5,0:5:192:0:0:0,-1.50515,-17.6491 0/0:9:9,0:9:356:0:0:0,-2.70927,-32.4005 dDocent_Contig_4127 37 . A T 152.28 . AB=0.25;ABP=18.2106;AC=1;AF=0.166667;AN=6;AO=7;CIGAR=1X;DP=89;DPB=89;DPRA=0.918033;EPP=18.2106;EPPR=181.071;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=279;QR=3163;RO=82;RPL=0;RPP=18.2106;RPPR=181.071;RPR=7;RUN=1;SAF=7;SAP=18.2106;SAR=0;SRF=82;SRP=181.071;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:47:47,0:47:1819:0:0:0,-14.1484,-163.925 0/1:28:21,7:21:820:7:279:-17.0519,0,-65.6854 0/0:14:14,0:14:524:0:0:0,-4.21442,-47.4822 dDocent_Contig_4128 172 . G A 613.358 . AB=0.324675;ABP=23.5688;AC=3;AF=0.5;AN=6;AO=25;CIGAR=1X;DP=77;DPB=77;DPRA=0;EPP=57.2971;EPPR=113.755;GTI=0;LEN=1;MEANALT=1.33333;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=986;QR=1980;RO=51;RPL=25;RPP=57.2971;RPPR=113.755;RPR=0;RUN=1;SAF=0;SAP=57.2971;SAR=25;SRF=0;SRP=113.755;SRR=51;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:52:32,19:32:1252:19:746:-52.0039,0,-97.5024 0/1:14:12,2:12:455:2:79:-3.28321,0,-37.0728 0/1:11:7,4:7:273:4:161:-11.5642,0,-21.6242 dDocent_Contig_4129 27 . T C 120.553 . AB=0.131868;ABP=110.128;AC=2;AF=0.333333;AN=6;AO=22;CIGAR=1X;DP=222;DPB=222;DPRA=0;EPP=50.7827;EPPR=437.305;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=1.38778e-17;PAIRED=1;PAIREDR=0.945;PAO=0;PQA=0;PQR=0;PRO=0;QA=871;QR=7909;RO=200;RPL=0;RPP=50.7827;RPPR=437.305;RPR=22;RUN=1;SAF=22;SAP=50.7827;SAR=0;SRF=200;SRP=437.305;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:131:121,10:121:4783:10:407:0,-2.44454,-393.379 0/1:33:30,3:30:1195:3:120:-1.2537,0,-97.8885 0/1:58:49,9:49:1931:9:344:-13.854,0,-156.526 dDocent_Contig_4130 140 . C T 56.6362 . AB=0.166667;ABP=43.5445;AC=2;AF=0.333333;AN=6;AO=7;CIGAR=1X;DP=75;DPB=75;DPRA=0.636364;EPP=18.2106;EPPR=150.67;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=235;QR=2285;RO=68;RPL=0;RPP=18.2106;RPPR=150.67;RPR=7;RUN=1;SAF=0;SAP=18.2106;SAR=7;SRF=0;SRP=150.67;SRR=68;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:33:33,0:33:1118:0:0:0,-9.93399,-100.923 0/1:31:26,5:26:867:5:165:-5.84378,0,-69.0052 0/1:11:9,2:9:300:2:70:-3.33607,0,-24.012 dDocent_Contig_4132 8 . T A 1262.62 . AB=0.267943;ABP=100.768;AC=3;AF=0.5;AN=6;AO=56;CIGAR=1X;DP=209;DPB=209;DPRA=0;EPP=124.613;EPPR=335.246;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=2152;QR=5884;RO=153;RPL=0;RPP=124.613;RPPR=335.246;RPR=56;RUN=1;SAF=56;SAP=124.613;SAR=0;SRF=153;SRP=335.246;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:114:85,29:85:3284:29:1124:-67.1438,0,-261.38 0/1:27:24,3:24:924:3:117:-2.78257,0,-75.3488 0/1:68:44,24:44:1676:24:911:-61.8357,0,-130.633 dDocent_Contig_4133 23 . C T 58.6753 . AB=0.25;ABP=9.52472;AC=1;AF=0.166667;AN=6;AO=3;CIGAR=1X;DP=34;DPB=34;DPRA=1.09091;EPP=9.52472;EPPR=70.3259;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=118;QR=1242;RO=31;RPL=0;RPP=9.52472;RPPR=70.3259;RPR=3;RUN=1;SAF=3;SAP=9.52472;SAR=0;SRF=31;SRP=70.3259;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:12:9,3:9:359:3:118:-7.39036,0,-29.0598 0/0:5:5,0:5:199:0:0:0,-1.50515,-18.2867 0/0:17:17,0:17:684:0:0:0,-5.11751,-61.8886 dDocent_Contig_4134 146 . C T 522.401 . AB=0.156398;ABP=219.386;AC=2;AF=0.333333;AN=6;AO=33;CIGAR=1X;DP=242;DPB=242;DPRA=3.40323;EPP=74.6689;EPPR=456.848;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=1318;QR=8255;RO=209;RPL=0;RPP=74.6689;RPPR=456.848;RPR=33;RUN=1;SAF=0;SAP=74.6689;SAR=33;SRF=0;SRP=456.848;SRR=209;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:160:138,22:138:5462:22:872:-30.6199,0,-443.266 0/0:31:31,0:31:1227:0:0:0,-9.33193,-110.704 0/1:51:40,11:40:1566:11:446:-25.1431,0,-125.825 dDocent_Contig_4135 24 . T A 121.946 . AB=0.3125;ABP=7.89611;AC=1;AF=0.166667;AN=6;AO=5;CIGAR=1X;DP=125;DPB=125;DPRA=0.293578;EPP=13.8677;EPPR=263.587;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=0.95;PAO=0;PQA=0;PQR=0;PRO=0;QA=205;QR=4763;RO=120;RPL=0;RPP=13.8677;RPPR=263.587;RPR=5;RUN=1;SAF=5;SAP=13.8677;SAR=0;SRF=120;SRP=263.587;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:72:72,0:72:2831:0:0:0,-21.6742,-254.899 0/1:16:11,5:11:440:5:205:-14.0185,0,-35.1372 0/0:37:37,0:37:1492:0:0:0,-11.1381,-134.522 dDocent_Contig_4136 74 . G A 41.7272 . AB=0.25;ABP=9.52472;AC=1;AF=0.166667;AN=6;AO=3;CIGAR=1X;DP=72;DPB=72;DPRA=0.4;EPP=9.52472;EPPR=152.842;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=103;QR=2375;RO=69;RPL=3;RPP=9.52472;RPPR=152.842;RPR=0;RUN=1;SAF=3;SAP=9.52472;SAR=0;SRF=69;SRP=152.842;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:51:51,0:51:1755:0:0:0,-15.3525,-158.237 0/0:9:9,0:9:310:0:0:0,-2.70927,-28.2343 0/1:12:9,3:9:310:3:103:-5.9966,0,-24.6219 dDocent_Contig_4139 10 . C A 465.439 . AB=0.227723;ABP=68.047;AC=3;AF=0.5;AN=6;AO=23;CIGAR=1X;DP=101;DPB=101;DPRA=0;EPP=52.9542;EPPR=172.385;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=904;QR=3080;RO=78;RPL=0;RPP=52.9542;RPPR=172.385;RPR=23;RUN=1;SAF=23;SAP=52.9542;SAR=0;SRF=78;SRP=172.385;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:40:24,16:24:939:16:638:-45.7139,0,-72.7706 0/1:46:41,5:41:1636:5:192:-3.7995,0,-133.627 0/1:15:13,2:13:505:2:74:-2.50857,0,-41.2775 dDocent_Contig_4140 7 . G A 7147.95 . AB=0.403571;ABP=25.6246;AC=6;AF=1;AN=6;AO=113;CIGAR=1X3M;DP=280;DPB=280;DPRA=0;EPP=248.387;EPPR=55.1256;GTI=0;LEN=1;MEANALT=3;MQM=60;MQMR=60;NS=3;NUMALT=2;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=4329;QR=847;RO=24;RPL=0;RPP=248.387;RPPR=55.1256;RPR=113;RUN=1;SAF=113;SAP=248.387;SAR=0;SRF=24;SRP=55.1256;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 1|1:169:13,86,69:13:449:86,69:3311,2647:-448.784,-180.838,-191.417,-235.43,0,-251.127 1|1:42:0,21,21:0:0:21,21:796,810:-132.165,-66.9042,-60.5825,-65.643,0,-59.3214 1|1:69:11,33,23:11:398:33,23:1263,872:-139.368,-39.0283,-61.5791,-71.1822,0,-96.743 dDocent_Contig_4141 40 . G C 77700.8 . AB=0;ABP=0;AC=6;AF=1;AN=6;AO=2221;CIGAR=1X;DP=2275;DPB=2275;DPRA=0;EPP=4817.17;EPPR=61.6401;GTI=0;LEN=1;MEANALT=2.33333;MQM=59.9964;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=87465;QR=1048;RO=27;RPL=1;RPP=4817.17;RPPR=61.6401;RPR=2220;RUN=1;SAF=2221;SAP=4825.85;SAR=0;SRF=27;SRP=61.6401;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 1/1:1369:20,1330:20:782:1330:52435:-4643.79,-336.068,0 1/1:226:0,226:0:0:226:8911:-801.536,-68.0328,0 1/1:680:7,665:7:266:665:26119:-2324.27,-178.38,0 dDocent_Contig_4142 49 . G C 46.2397 . AB=0.114583;ABP=126.875;AC=2;AF=0.333333;AN=6;AO=14;CIGAR=1X1M1X;DP=167;DPB=167;DPRA=0;EPP=33.4109;EPPR=335.246;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=520;QR=5883;RO=153;RPL=14;RPP=33.4109;RPPR=335.246;RPR=0;RUN=1;SAF=14;SAP=33.4109;SAR=0;SRF=153;SRP=335.246;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|0:71:68,3:68:2593:3:117:0,-10.4629,-222.622 0|1:62:56,6:56:2154:6:228:-2.2174,0,-175.41 0|1:34:29,5:29:1136:5:175:-5.8495,0,-92.298 dDocent_Contig_4143 161 . C G 4495.89 . AB=0.768421;ABP=121.916;AC=3;AF=0.5;AN=6;AO=146;CIGAR=1X3M1X;DP=190;DPB=190;DPRA=0;EPP=320.045;EPPR=79.0118;GTI=0;LEN=1;MEANALT=2;MQM=60;MQMR=60;NS=3;NUMALT=2;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=5668;QR=1364;RO=35;RPL=146;RPP=320.045;RPPR=79.0118;RPR=0;RUN=1;SAF=0;SAP=320.045;SAR=146;SRF=0;SRP=79.0118;SRR=35;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|1:111:19,87,5:19:736:87,5:3363,196:-270.461,0,-34.2599,-260.064,-44.3321,-319.012 0|1:33:4,26,3:4:155:26,3:1020,118:-82.6759,0,-4.9036,-74.1733,-3.02122,-86.0033 0|1:46:12,33,1:12:473:33,1:1285,41:-101.974,0,-28.9667,-102.201,-35.5154,-140.817 dDocent_Contig_4144 107 . N C 67.4314 . AB=0;ABP=0;AC=2;AF=1;AN=2;AO=2;CIGAR=1X;DP=2;DPB=2;DPRA=0;EPP=7.35324;EPPR=0;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=0;NS=1;NUMALT=1;ODDS=5.99146;PAIRED=1;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=71;QR=0;RO=0;RPL=0;RPP=7.35324;RPPR=0;RPR=2;RUN=1;SAF=0;SAP=7.35324;SAR=2;SRF=0;SRP=0;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 1/1:2:0,2:0:0:2:71:-6.74206,-0.60206,0 ./.:.:.:.:.:.:.:. ./.:.:.:.:.:.:.:. dDocent_Contig_4145 48 . T C 454.582 . AB=0.125;ABP=393.875;AC=3;AF=0.5;AN=6;AO=40;CIGAR=1X;DP=320;DPB=320;DPRA=0;EPP=13.6505;EPPR=611.023;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=1604;QR=11188;RO=280;RPL=27;RPP=13.6505;RPPR=611.023;RPR=13;RUN=1;SAF=40;SAP=89.8692;SAR=0;SRF=280;SRP=611.023;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:228:202,26:202:8088:26:1049:-26.0636,0,-658.833 0/1:30:21,9:21:824:9:351:-22.9157,0,-65.4417 0/1:62:57,5:57:2276:5:204:-0.0801727,0,-186.338 dDocent_Contig_4146 17 . C T 184.166 . AB=0.275862;ABP=15.6647;AC=1;AF=0.166667;AN=6;AO=11;CIGAR=1X;DP=126;DPB=126;DPRA=0;EPP=26.8965;EPPR=252.73;GTI=0;LEN=1;MEANALT=1;MQM=57.8182;MQMR=59.0957;NS=3;NUMALT=1;ODDS=0;PAIRED=0.909091;PAIREDR=0.965217;PAO=0;PQA=0;PQR=0;PRO=0;QA=442;QR=4627;RO=115;RPL=0;RPP=26.8965;RPPR=252.73;RPR=11;RUN=1;SAF=11;SAP=26.8965;SAR=0;SRF=115;SRP=252.73;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:71:70,1:70:2818:1:36:0,-17.7749,-247.401 0/0:26:24,2:24:957:2:82:0,-0.0471021,-78.6524 0/1:29:21,8:21:852:8:324:-20.2392,0,-68.2615 dDocent_Contig_4147 190 . T G 903.618 . AB=0.290909;ABP=23.8959;AC=4;AF=0.666667;AN=6;AO=32;CIGAR=1X;DP=72;DPB=72;DPRA=0;EPP=72.4974;EPPR=89.8692;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=1261;QR=1462;RO=40;RPL=32;RPP=72.4974;RPPR=89.8692;RPR=0;RUN=1;SAF=0;SAP=72.4974;SAR=32;SRF=0;SRP=89.8692;SRR=40;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:34:24,10:24:847:10:383:-24.5771,0,-66.2701 1/1:17:1,16:1:41:16:641:-53.9271,-1.02294,0 0/1:21:15,6:15:574:6:237:-15.3804,0,-45.6707 dDocent_Contig_4148 98 . N A 132.046 . AB=0;ABP=0;AC=4;AF=1;AN=4;AO=4;CIGAR=1X;DP=4;DPB=4;DPRA=0;EPP=11.6962;EPPR=0;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=0;NS=2;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=136;QR=0;RO=0;RPL=4;RPP=11.6962;RPPR=0;RPR=0;RUN=1;SAF=4;SAP=11.6962;SAR=0;SRF=0;SRP=0;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 1/1:1:0,1:0:0:1:32:-3.19931,-0.30103,0 ./.:.:.:.:.:.:.:. 1/1:3:0,3:0:0:3:104:-9.7028,-0.90309,0 dDocent_Contig_4149 46 . A T 2417.88 . AB=0.350993;ABP=32.131;AC=3;AF=0.5;AN=6;AO=53;CIGAR=1X1M1X2M1X;DP=151;DPB=151;DPRA=0;EPP=118.098;EPPR=48.6112;GTI=0;LEN=1;MEANALT=4;MQM=60;MQMR=60;NS=3;NUMALT=3;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=2035;QR=833;RO=21;RPL=0;RPP=118.098;RPPR=48.6112;RPR=53;RUN=1;SAF=53;SAP=118.098;SAR=0;SRF=21;SRP=48.6112;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|1:63:15,12,22,12:15:593:12,22,12:463,872,483:-67.2576,-33.759,-78.9465,0,-10.7876,-42.1785,-31.9638,-42.7505,-8.99112,-77.153 1|0:20:0,3,14,3:0:0:3,14,3:118,515,122:-52.1463,-42.4367,-41.5336,-10.0698,-0.369605,-5.85542,-42.0779,-32.3666,0,-41.1748 1|0:68:6,13,17,29:6:240:13,17,29:494,648,1168:-127.85,-89.149,-105.007,-76.5078,-55.7745,-91.162,-33.3786,-12.6432,0,-44.4233 dDocent_Contig_4150 12 . C A 1899.52 . AB=0.244776;ABP=192.551;AC=3;AF=0.5;AN=6;AO=82;CIGAR=1X;DP=335;DPB=335;DPRA=0;EPP=181.071;EPPR=552.393;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=3283;QR=10192;RO=253;RPL=0;RPP=181.071;RPPR=552.393;RPR=82;RUN=1;SAF=82;SAP=181.071;SAR=0;SRF=253;SRP=552.393;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:163:122,41:122:4925:41:1646:-99.2985,0,-394.046 0/1:91:65,26:65:2606:26:1043:-66.7668,0,-207.271 0/1:81:66,15:66:2661:15:594:-29.4097,0,-215.217 dDocent_Contig_4152 16 . G A 125.966 . AB=0.114865;ABP=193.689;AC=2;AF=0.333333;AN=6;AO=20;CIGAR=1X;DP=297;DPB=297;DPRA=0;EPP=46.4397;EPPR=600.165;GTI=0;LEN=1;MEANALT=1.33333;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=0.996364;PAO=0;PQA=0;PQR=0;PRO=0;QA=787;QR=10905;RO=275;RPL=0;RPP=46.4397;RPPR=600.165;RPR=20;RUN=1;SAF=20;SAP=46.4397;SAR=0;SRF=275;SRP=600.165;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:149:146,3:146:5813:3:123:0,-33.3887,-511.499 0/1:48:42,6:42:1637:6:227:-6.33868,0,-133.113 0/1:100:87,11:87:3455:11:437:-9.78076,0,-281.098 dDocent_Contig_4153 14 . G T 540.933 . AB=0.219298;ABP=81.0309;AC=1;AF=0.166667;AN=6;AO=29;CIGAR=1X;DP=233;DPB=233;DPRA=0;EPP=65.983;EPPR=445.991;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=1156;QR=8099;RO=204;RPL=0;RPP=65.983;RPPR=445.991;RPR=29;RUN=1;SAF=29;SAP=65.983;SAR=0;SRF=204;SRP=445.991;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:114:89,25:89:3503:25:996:-55.6162,0,-280.985 0/0:56:54,2:54:2162:2:78:0,-9.45438,-187.351 0/0:63:61,2:61:2434:2:82:0,-11.1852,-211.423 dDocent_Contig_4155 55 . C A 840.048 . AB=0.12381;ABP=390.215;AC=3;AF=0.5;AN=6;AO=39;CIGAR=1X3M;DP=315;DPB=315;DPRA=0;EPP=87.6977;EPPR=506.792;GTI=0;LEN=1;MEANALT=2.33333;MQM=60;MQMR=60;NS=3;NUMALT=2;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=1570;QR=9025;RO=232;RPL=39;RPP=87.6977;RPPR=506.792;RPR=0;RUN=1;SAF=39;SAP=87.6977;SAR=0;SRF=232;SRP=506.792;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|1:202:145,33,23:145:5623:33,23:1265,926:-60.1505,0,-451.999,-27.4707,-385.612,-482.492 0|1:39:30,5,4:30:1188:5,4:192,161:-6.71938,0,-96.2679,-2.47338,-84.5036,-99.0582 0|1:74:57,5,12:57:2214:5,12:195,483:-22.6572,-23.7911,-204.194,0,-165.89,-178.306 dDocent_Contig_4156 38 . C T 5570.8 . AB=0.102041;ABP=70.4146;AC=0;AF=0;AN=6;AO=10;CIGAR=1X2M1X1M1X3M;DP=205;DPB=205;DPRA=2.27027;EPP=24.725;EPPR=35.5824;GTI=0;LEN=1;MEANALT=4;MQM=60;MQMR=60;NS=3;NUMALT=2;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=388;QR=583;RO=15;RPL=0;RPP=24.725;RPPR=35.5824;RPR=10;RUN=1;SAF=10;SAP=24.725;SAR=0;SRF=15;SRP=35.5824;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|0:119:8,5,100:8:302:5,100:191,3836:-317.772,-304.509,-327.75,-5.36021,-14.4316,0 0|0:37:0,0,37:0:0:0,37:0,1424:-128.431,-128.431,-128.431,-11.1381,-11.1381,0 0|0:49:7,5,36:7:281:5,36:197,1394:-112.399,-98.2978,-119.95,0,-6.95478,-12.3245 dDocent_Contig_4157 17 . T C 110.165 . AB=0.0655738;ABP=103.005;AC=0;AF=0;AN=6;AO=6;CIGAR=1X1M1D1M;DP=112;DPB=110.5;DPRA=0;EPP=16.0391;EPPR=209.3;GTI=0;LEN=1;MEANALT=2.5;MQM=60;MQMR=60;NS=3;NUMALT=2;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=243;QR=3766;RO=95;RPL=0;RPP=16.0391;RPPR=209.3;RPR=6;RUN=1;SAF=6;SAP=16.0391;SAR=0;SRF=95;SRP=209.3;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|0:61:48,4,8:48:1899:4,8:162,327:-12.5359,-13.6284,-168.688,0,-142.907,-153.857 0|0:11:10,0,1:10:391:0,1:0,37:-0.386499,-3.3968,-35.562,0,-32.5369,-32.2359 0|0:40:37,2,0:37:1476:2,0:81,0:0,-4.44242,-125.415,-11.1381,-126.017,-132.696 dDocent_Contig_4158 2 . A C 420.21 . AB=0.75;ABP=9.52472;AC=4;AF=0.666667;AN=6;AO=16;CIGAR=2X;DP=19;DPB=19;DPRA=0;EPP=37.7539;EPPR=0;GTI=0;LEN=1;MEANALT=1.66667;MQM=36.5625;MQMR=0;NS=3;NUMALT=2;ODDS=0;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=551;QR=0;RO=0;RPL=0;RPP=37.7539;RPPR=0;RPR=16;RUN=1;SAF=0;SAP=37.7539;SAR=16;SRF=0;SRP=0;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 1|0:5:0,4,1:0:0:4,1:143,28:-13.0698,-2.19828,-0.994164,-11.1382,0,-10.8372 1|1:7:0,7,0:0:0:7,0:244,0:-13.5384,-2.10721,0,-13.5384,-2.10721,-13.5384 1|0:7:0,5,2:0:0:5,2:164,69:-17.9144,-5.86472,-4.35957,-12.3791,0,-11.777 dDocent_Contig_4160 28 . T A 933.733 . AB=0.388889;ABP=12.6613;AC=3;AF=0.5;AN=6;AO=35;CIGAR=1X;DP=90;DPB=90;DPRA=0;EPP=79.0118;EPPR=122.441;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=1371;QR=2024;RO=55;RPL=0;RPP=79.0118;RPPR=122.441;RPR=35;RUN=1;SAF=35;SAP=79.0118;SAR=0;SRF=55;SRP=122.441;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:65:33,32:33:1213:32:1249:-93.117,0,-89.8945 0/1:13:11,2:11:412:2:81:-3.77234,0,-33.516 0/1:12:11,1:11:399:1:41:-0.482207,0,-32.6392 dDocent_Contig_4161 69 . C T 63.0334 . AB=0.294118;ABP=9.26925;AC=1;AF=0.166667;AN=6;AO=8;CIGAR=1X;DP=92;DPB=92;DPRA=3.68182;EPP=20.3821;EPPR=185.414;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=261;QR=3012;RO=84;RPL=8;RPP=20.3821;RPPR=185.414;RPR=0;RUN=1;SAF=8;SAP=20.3821;SAR=0;SRF=84;SRP=185.414;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:64:61,3:61:2229:3:117:0,-8.35554,-189.954 0/0:11:11,0:11:390:0:0:0,-3.31133,-35.4301 0/1:17:12,5:12:393:5:144:-8.12725,0,-30.5669 dDocent_Contig_4162 9 . C T 39.6901 . AB=0.176471;ABP=18.4661;AC=1;AF=0.166667;AN=6;AO=3;CIGAR=1X;DP=142;DPB=142;DPRA=0.272;EPP=9.52472;EPPR=304.845;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=1.73472e-18;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=117;QR=5331;RO=139;RPL=0;RPP=9.52472;RPPR=304.845;RPR=3;RUN=1;SAF=3;SAP=9.52472;SAR=0;SRF=139;SRP=304.845;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:85:85,0:85:3253:0:0:0,-25.5875,-292.914 0/1:17:14,3:14:542:3:117:-5.79287,0,-44.0083 0/0:40:40,0:40:1536:0:0:0,-12.0412,-138.51 dDocent_Contig_4163 27 . T C 7238.65 . AB=0.0737913;ABP=623.096;AC=0;AF=0;AN=6;AO=29;CIGAR=1X1M1X;DP=393;DPB=393;DPRA=0;EPP=65.983;EPPR=270.101;GTI=0;LEN=1;MEANALT=2;MQM=60;MQMR=60;NS=3;NUMALT=2;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=1106;QR=4735;RO=123;RPL=0;RPP=65.983;RPPR=270.101;RPR=29;RUN=1;SAF=29;SAP=65.983;SAR=0;SRF=123;SRP=270.101;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|0:192:25,23,144:25:969:23,144:870,5550:-448.141,-384.37,-457.052,0,-8.31652,-36.2622 0|0:84:40,3,41:40:1536:3,41:117,1612:-120.552,-122.977,-248.147,0,-116.456,-113.731 0|0:117:58,3,56:58:2230:3,56:119,2169:-160.694,-168.358,-350.52,0,-173.259,-166.198 dDocent_Contig_4164 16 . C T 1058.23 . AB=0.0847458;ABP=91.3782;AC=0;AF=0;AN=6;AO=5;CIGAR=3M1X6M;DP=343;DPB=345.3;DPRA=0;EPP=13.8677;EPPR=556.736;GTI=0;LEN=1;MEANALT=3;MQM=60;MQMR=60;NS=3;NUMALT=3;ODDS=2.77556e-17;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=196;QR=10035;RO=255;RPL=0;RPP=13.8677;RPPR=556.736;RPR=5;RUN=1;SAF=5;SAP=13.8677;SAR=0;SRF=255;SRP=556.736;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|0:233:184,11,37,0:184:7246:11,37,0:422,1465,0:-65.1768,-85.9332,-678.701,0,-561.454,-584.951,-120.566,-682.012,-596.089,-716.647 0|0:59:32,8,14,5:32:1235:8,14,5:314,523,196:-33.1702,-16.9763,-115.991,0,-75.5896,-97.199,-26.683,-102.28,-85.2948,-126.599 0|0:51:39,4,8,0:39:1554:4,8,0:156,302,0:-12.9993,-11.9134,-138.697,0,-115.157,-125.57,-24.7395,-139.901,-127.978,-152.723 dDocent_Contig_4165 14 . G C 1613.06 . AB=0.218935;ABP=234.934;AC=3;AF=0.5;AN=6;AO=74;CIGAR=1X;DP=338;DPB=338;DPRA=0;EPP=163.699;EPPR=567.593;GTI=0;LEN=1;MEANALT=1.66667;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=2970;QR=10271;RO=260;RPL=0;RPP=163.699;RPPR=567.593;RPR=74;RUN=1;SAF=74;SAP=163.699;SAR=0;SRF=260;SRP=567.593;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:245:181,61:181:7119:61:2449:-147.3,0,-567.149 0/1:43:37,6:37:1462:6:236:-8.66453,0,-118.883 0/1:50:42,7:42:1690:7:285:-10.8648,0,-137.163 dDocent_Contig_4166 44 . A T 496.013 . AB=0.048;ABP=224.831;AC=1;AF=0.166667;AN=6;AO=6;CIGAR=1X2M1X1M2X1M1X2M1X;DP=125;DPB=125;DPRA=0;EPP=16.0391;EPPR=174.557;GTI=0;LEN=1;MEANALT=3.33333;MQM=56;MQMR=60;NS=3;NUMALT=4;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=234;QR=3104;RO=79;RPL=6;RPP=16.0391;RPPR=174.557;RPR=0;RUN=1;SAF=6;SAP=16.0391;SAR=0;SRF=79;SRP=174.557;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|0:71:44,3,9,4,11:44:1728:3,9,4,11:118,356,160,441:-23.0901,-26.6448,-167.863,-7.03817,-139.467,-146.449,-23.1548,-155.585,-135.978,-164.072,0,-132.431,-112.823,-128.942,-138.811 0|1:17:14,2,0,1,0:14:539:2,0,1,0:77,0,40,0:-2.08943,0,-43.6371,-6.30385,-44.2392,-50.5531,-3.00365,-40.9431,-47.2571,-46.9561,-6.30385,-44.2392,-50.5531,-47.2571,-50.5531 0|0:37:21,1,12,2,0:21:837:1,12,2,0:39,442,78,0:-29.8402,-32.9587,-101.61,0,-65.7789,-65.3678,-29.7459,-95.4986,-62.5683,-98.098,-36.1619,-101.911,-68.9802,-98.7,-105.112 dDocent_Contig_4167 8 . T C 3600.58 . AB=0.582524;ABP=15.1958;AC=3;AF=0.5;AN=6;AO=120;CIGAR=1X2M1X1M2X4M;DP=206;DPB=206;DPRA=0;EPP=263.587;EPPR=155.013;GTI=0;LEN=1;MEANALT=2.66667;MQM=60;MQMR=60;NS=3;NUMALT=3;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=4701;QR=2746;RO=70;RPL=0;RPP=263.587;RPPR=155.013;RPR=120;RUN=1;SAF=120;SAP=263.587;SAR=0;SRF=70;SRP=155.013;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|1:95:34,60,0,0:34:1338:60,0,0:2361,0,0:-184.035,0,-92.0579,-194.27,-110.12,-304.338,-194.27,-110.12,-304.338,-304.338 0|1:63:21,31,4,7:21:817:31,4,7:1201,152,242:-92.3604,0,-57.8278,-86.2166,-54.6941,-152.155,-79.0243,-47.5044,-133.7,-144.058 0|1:48:15,29,0,3:15:591:29,0,3:1139,0,109:-89.1859,0,-39.9123,-93.7013,-48.6421,-142.325,-84.8271,-39.7701,-133.45,-132.547 dDocent_Contig_4168 153 . T C 49.1702 . AB=0.127273;ABP=69.3784;AC=1;AF=0.166667;AN=6;AO=9;CIGAR=1X;DP=166;DPB=166;DPRA=1.00909;EPP=22.5536;EPPR=343.931;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=337;QR=6104;RO=157;RPL=0;RPP=22.5536;RPPR=343.931;RPR=9;RUN=1;SAF=0;SAP=22.5536;SAR=9;SRF=0;SRP=343.931;SRR=157;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:56:54,2:54:2118:2:82:0,-9.078,-183.021 0/0:55:55,0:55:2129:0:0:0,-16.5566,-191.808 0/1:55:48,7:48:1857:7:255:-6.74092,0,-150.788 dDocent_Contig_4169 28 . T C 2124.23 . AB=0.0714286;ABP=47.6806;AC=0;AF=0;AN=6;AO=2;CIGAR=1X3M2X;DP=87;DPB=87;DPRA=0;EPP=7.35324;EPPR=35.5824;GTI=0;LEN=1;MEANALT=4;MQM=60;MQMR=60;NS=3;NUMALT=2;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=80;QR=596;RO=15;RPL=0;RPP=7.35324;RPPR=35.5824;RPR=2;RUN=1;SAF=2;SAP=7.35324;SAR=0;SRF=15;SRP=35.5824;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|0:28:5,0,23:5:202:0,23:0,922:-74.8562,-76.3614,-93.0154,0,-17.0569,-10.1332 0|0:31:8,0,22:8:313:0,22:0,874:-69.5328,-71.9411,-97.675,0,-25.7191,-19.0964 0|0:28:2,2,22:2:81:2,22:80,877:-71.6113,-65.6231,-71.7006,0,-0.0914715,-0.0573256 dDocent_Contig_4171 18 . T C 31.7854 . AB=0.115385;ABP=69.8248;AC=2;AF=0.333333;AN=6;AO=8;CIGAR=1X;DP=90;DPB=90;DPRA=0;EPP=20.3821;EPPR=181.071;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=3.46945e-18;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=317;QR=3270;RO=82;RPL=0;RPP=20.3821;RPPR=181.071;RPR=8;RUN=1;SAF=8;SAP=20.3821;SAR=0;SRF=82;SRP=181.071;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:38:36,2:36:1394:2:78:0,-4.03584,-118.306 0/1:29:26,3:26:1060:3:118:-2.27302,0,-86.9562 0/1:23:20,3:20:816:3:121:-4.35651,0,-66.8296 dDocent_Contig_4174 62 . A T 7942.19 . AB=0.732394;ABP=36.3164;AC=4;AF=0.666667;AN=6;AO=229;CIGAR=1X;DP=249;DPB=249;DPRA=0;EPP=500.277;EPPR=46.4397;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=9144;QR=805;RO=20;RPL=229;RPP=500.277;RPPR=46.4397;RPR=0;RUN=1;SAF=229;SAP=500.277;SAR=0;SRF=20;SRP=46.4397;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 1/1:178:1,177:1:41:177:7072:-632.048,-49.4888,0 0/1:20:11,9:11:448:9:366:-27.284,0,-34.6554 0/1:51:8,43:8:316:43:1706:-138.41,0,-13.452 dDocent_Contig_4175 20 . T C 387.389 . AB=0.785714;ABP=12.937;AC=4;AF=0.666667;AN=6;AO=13;CIGAR=2X1M1X1M2D1X;DP=16;DPB=12.75;DPRA=0;EPP=31.2394;EPPR=9.52472;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=487;QR=118;RO=3;RPL=0;RPP=31.2394;RPPR=9.52472;RPR=13;RUN=1;SAF=13;SAP=31.2394;SAR=0;SRF=0;SRP=9.52472;SRR=3;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|1:11:1,10:1:38:10:371:-30.426,0,-0.485939 1|1:2:0,2:0:0:2:77:-7.30914,-0.60206,0 0|1:3:2,1:2:80:1:39:-2.99347,0,-6.6887 dDocent_Contig_4176 86 . A G 101.729 . AB=0.384615;ABP=4.51363;AC=1;AF=0.166667;AN=6;AO=7;CIGAR=1X;DP=49;DPB=49;DPRA=1.95;EPP=18.2106;EPPR=94.2121;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=235;QR=1473;RO=42;RPL=7;RPP=18.2106;RPPR=94.2121;RPR=0;RUN=1;SAF=7;SAP=18.2106;SAR=0;SRF=42;SRP=94.2121;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:26:24,2:24:840:2:62:0,-1.93858,-70.0308 0/0:10:10,0:10:353:0:0:0,-3.0103,-32.1094 0/1:13:8,5:8:280:5:173:-11.9968,0,-21.6266 dDocent_Contig_4177 98 . N A 64.5902 . AB=0;ABP=0;AC=2;AF=1;AN=2;AO=2;CIGAR=2X;DP=2;DPB=2;DPRA=0;EPP=7.35324;EPPR=0;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=0;NS=1;NUMALT=1;ODDS=5.99146;PAIRED=1;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=68;QR=0;RO=0;RPL=2;RPP=7.35324;RPPR=0;RPR=0;RUN=1;SAF=2;SAP=7.35324;SAR=0;SRF=0;SRP=0;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL .:.:.:.:.:.:.:. 1|1:2:0,2:0:0:2:68:-6.45793,-0.60206,0 .:.:.:.:.:.:.:. dDocent_Contig_4178 29 . C T 1386.2 . AB=0.242525;ABP=176.331;AC=3;AF=0.5;AN=6;AO=73;CIGAR=1X;DP=301;DPB=301;DPRA=0;EPP=161.528;EPPR=498.106;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=2598;QR=9050;RO=228;RPL=0;RPP=161.528;RPPR=498.106;RPR=73;RUN=1;SAF=73;SAP=161.528;SAR=0;SRF=228;SRP=498.106;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:179:145,34:145:5718:34:1222:-56.3914,0,-460.546 0/1:45:32,13:32:1276:13:447:-27.0083,0,-101.556 0/1:77:51,26:51:2056:26:929:-60.743,0,-162.046 dDocent_Contig_4179 98 . N T 300.857 . AB=0;ABP=0;AC=6;AF=1;AN=6;AO=9;CIGAR=2X;DP=9;DPB=9;DPRA=0;EPP=22.5536;EPPR=0;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=0;NS=3;NUMALT=1;ODDS=1.69407e-21;PAIRED=1;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=316;QR=0;RO=0;RPL=9;RPP=22.5536;RPPR=0;RPR=0;RUN=1;SAF=9;SAP=22.5536;SAR=0;SRF=0;SRP=0;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 1|1:4:0,4:0:0:4:140:-12.9449,-1.20412,0 1|1:3:0,3:0:0:3:105:-9.79616,-0.90309,0 1|1:2:0,2:0:0:2:71:-6.74206,-0.60206,0 dDocent_Contig_4180 70 . G A 27334.6 . AB=0;ABP=0;AC=6;AF=1;AN=6;AO=873;CIGAR=1X;DP=948;DPB=948;DPRA=0;EPP=1890.03;EPPR=94.2121;GTI=0;LEN=1;MEANALT=2.33333;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=0.925544;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=31883;QR=1499;RO=42;RPL=873;RPP=1898.71;RPPR=94.2121;RPR=0;RUN=1;SAF=872;SAP=1890.03;SAR=1;SRF=42;SRP=94.2121;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 1/1:382:14,356:14:512:356:13014:-1124.54,-65.3333,0 1/1:255:8,239:8:291:239:9004:-783.605,-48.1814,0 1/1:311:20,278:20:696:278:9865:-824.845,-27.0895,0 dDocent_Contig_4182 23 . T C 3778.09 . AB=0.802721;ABP=120.019;AC=3;AF=0.5;AN=6;AO=118;CIGAR=1X;DP=147;DPB=147;DPRA=0;EPP=259.244;EPPR=65.983;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=6.93889e-18;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=4726;QR=1169;RO=29;RPL=0;RPP=259.244;RPPR=65.983;RPR=118;RUN=1;SAF=118;SAP=259.244;SAR=0;SRF=29;SRP=65.983;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:72:16,56:16:647:56:2254:-181.348,0,-36.8899 0/1:24:2,22:2:81:22:890:-73.183,0,-0.461014 0/1:51:11,40:11:441:40:1582:-127.257,0,-24.6925 dDocent_Contig_4183 15 . T A 1932.98 . AB=0.296875;ABP=94.755;AC=3;AF=0.5;AN=6;AO=76;CIGAR=1X1M;DP=256;DPB=256;DPRA=0;EPP=168.042;EPPR=363.475;GTI=0;LEN=1;MEANALT=2;MQM=60;MQMR=60;NS=3;NUMALT=2;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=3022;QR=6641;RO=166;RPL=0;RPP=168.042;RPPR=363.475;RPR=76;RUN=1;SAF=76;SAP=168.042;SAR=0;SRF=166;SRP=363.475;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|1:132:79,5,48:79:3149:5,48:199,1902:-132.76,-140.156,-397.957,0,-242.92,-244.855 0|1:59:39,5,15:39:1568:5,15:203,604:-38.0384,-33.0354,-160.747,0,-112.471,-124.699 0|1:65:48,4,13:48:1924:4,13:160,516:-28.0228,-29.2918,-186.596,0,-145.326,-154.592 dDocent_Contig_4184 23 . G C 425.136 . AB=0.298246;ABP=23.1631;AC=2;AF=0.333333;AN=6;AO=17;CIGAR=1X;DP=80;DPB=80;DPRA=1.23913;EPP=39.9253;EPPR=139.813;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=3.46945e-18;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=694;QR=2498;RO=63;RPL=0;RPP=39.9253;RPPR=139.813;RPR=17;RUN=1;SAF=17;SAP=39.9253;SAR=0;SRF=63;SRP=139.813;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:37:25,12:25:982:12:490:-33.313,0,-77.5275 0/1:20:15,5:15:603:5:204:-12.7234,0,-48.5863 0/0:23:23,0:23:913:0:0:0,-6.92369,-82.4754 dDocent_Contig_4185 9 . G C 3755.36 . AB=0.796992;ABP=104.906;AC=4;AF=0.666667;AN=6;AO=121;CIGAR=1X;DP=148;DPB=148;DPRA=0;EPP=265.758;EPPR=59.4686;GTI=0;LEN=1;MEANALT=1.33333;MQM=59.8099;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=4649;QR=988;RO=26;RPL=0;RPP=265.758;RPPR=59.4686;RPR=121;RUN=1;SAF=121;SAP=265.758;SAR=0;SRF=26;SRP=59.4686;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:96:19,77:19:720:77:2953:-237.003,0,-36.2301 1/1:15:0,15:0:0:15:575:-52.0921,-4.51545,0 0/1:37:7,29:7:268:29:1121:-89.9635,0,-13.2581 dDocent_Contig_4186 43 . A T 161.45 . AB=0.28125;ABP=16.3106;AC=2;AF=0.333333;AN=6;AO=10;CIGAR=1X;DP=57;DPB=57;DPRA=0;EPP=24.725;EPPR=105.07;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=350;QR=1699;RO=47;RPL=0;RPP=24.725;RPPR=105.07;RPR=10;RUN=1;SAF=10;SAP=24.725;SAR=0;SRF=47;SRP=105.07;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:25:24,1:24:852:1:33:0,-4.22661,-73.6853 0/1:15:13,2:13:475:2:71:-2.22613,0,-38.5714 0/1:17:10,7:10:372:7:246:-17.3632,0,-28.7115 dDocent_Contig_4187 166 . C A 5417.1 . AB=0.819048;ABP=188.682;AC=3;AF=0.5;AN=6;AO=172;CIGAR=1X;DP=210;DPB=210;DPRA=0;EPP=376.504;EPPR=85.5263;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=6777;QR=1529;RO=38;RPL=172;RPP=376.504;RPPR=85.5263;RPR=0;RUN=1;SAF=0;SAP=376.504;SAR=172;SRF=0;SRP=85.5263;SRR=38;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:140:18,122:18:725:122:4819:-391.486,0,-23.4302 0/1:17:3,14:3:122:14:548:-44.5424,0,-6.25498 0/1:53:17,36:17:682:36:1410:-111.205,0,-45.7541 dDocent_Contig_4188 87 . C T 60.0349 . AB=0.145455;ABP=63.0614;AC=1;AF=0.166667;AN=6;AO=12;CIGAR=1X;DP=129;DPB=129;DPRA=0;EPP=29.068;EPPR=257.073;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=397;QR=4010;RO=117;RPL=12;RPP=29.068;RPPR=257.073;RPR=0;RUN=1;SAF=12;SAP=29.068;SAR=0;SRF=117;SRP=257.073;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:55:47,8:47:1585:8:264:-7.52636,0,-126.377 0/0:29:28,1:28:973:1:35:0,-5.23124,-84.3856 0/0:45:42,3:42:1452:3:98:0,-4.40217,-121.832 dDocent_Contig_4189 44 . C T 1405.61 . AB=0.537634;ABP=4.15441;AC=3;AF=0.5;AN=6;AO=50;CIGAR=1M1I2M1X;DP=93;DPB=105.5;DPRA=0;EPP=111.584;EPPR=96.3836;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=1923;QR=1667;RO=43;RPL=0;RPP=111.584;RPPR=96.3836;RPR=50;RUN=1;SAF=50;SAP=111.584;SAR=0;SRF=43;SRP=96.3836;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|1:43:10,33:10:393:33:1268:-101.463,0,-22.784 0|1:22:11,11:11:424:11:420:-31.5278,0,-31.8864 0|1:28:22,6:22:850:6:235:-13.0927,0,-68.3868 dDocent_Contig_4190 19 . A C 7964.09 . AB=0.0779944;ABP=558.333;AC=0;AF=0;AN=6;AO=28;CIGAR=1X3M2X;DP=359;DPB=359;DPRA=0;EPP=63.8115;EPPR=170.214;GTI=0;LEN=1;MEANALT=2.66667;MQM=60;MQMR=60;NS=3;NUMALT=2;ODDS=2.77556e-17;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=1088;QR=3002;RO=77;RPL=0;RPP=63.8115;RPPR=170.214;RPR=28;RUN=1;SAF=28;SAP=63.8115;SAR=0;SRF=77;SRP=170.214;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|0:197:39,16,141:39:1536:16,141:610,5627:-451.673,-413.379,-534.92,0,-76.3341,-83.9215 0|0:38:4,1,33:4:160:1,33:40,1303:-106.002,-103.911,-116.79,0,-9.88482,-3.24592 0|0:124:34,11,78:34:1306:11,78:438,3092:-244.249,-218.418,-322.299,0,-71.117,-83.7053 dDocent_Contig_4191 14 . G A 2120.29 . AB=0.392857;ABP=22.5536;AC=3;AF=0.5;AN=6;AO=77;CIGAR=1X;DP=196;DPB=196;DPRA=0;EPP=170.214;EPPR=261.416;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=59.7395;NS=3;NUMALT=1;ODDS=1.38778e-17;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=3063;QR=4714;RO=119;RPL=0;RPP=170.214;RPPR=261.416;RPR=77;RUN=1;SAF=77;SAP=170.214;SAR=0;SRF=119;SRP=261.416;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:86:56,30:56:2231:30:1188:-81.31,0,-175.075 0/1:64:41,23:41:1617:23:921:-63.9296,0,-125.488 0/1:46:22,24:22:866:24:954:-72.312,0,-64.4082 dDocent_Contig_4192 46 . G A 4122.69 . AB=0.754386;ABP=67.0878;AC=4;AF=0.666667;AN=6;AO=134;CIGAR=1X;DP=165;DPB=165;DPRA=0;EPP=293.988;EPPR=70.3259;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=0.970149;PAIREDR=0.967742;PAO=0;PQA=0;PQR=0;PRO=0;QA=5108;QR=1171;RO=31;RPL=0;RPP=293.988;RPPR=70.3259;RPR=134;RUN=1;SAF=134;SAP=293.988;SAR=0;SRF=31;SRP=70.3259;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:63:17,46:17:654:46:1788:-142.196,0,-40.2264 0/1:51:11,40:11:406:40:1495:-119.457,0,-21.5259 1/1:51:3,48:3:111:48:1825:-154.139,-4.99975,0 dDocent_Contig_4193 10 . T A 3195.87 . AB=0.451883;ABP=7.81661;AC=3;AF=0.5;AN=6;AO=108;CIGAR=3X;DP=239;DPB=239;DPRA=0;EPP=237.529;EPPR=183.243;GTI=0;LEN=1;MEANALT=2;MQM=59.9815;MQMR=60;NS=3;NUMALT=2;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=4256;QR=3304;RO=83;RPL=0;RPP=237.529;RPPR=183.243;RPR=108;RUN=1;SAF=108;SAP=237.529;SAR=0;SRF=83;SRP=183.243;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|1:144:43,67,34:43:1715:67,34:2643,1362:-204.496,0,-121.061,-105.232,-29.023,-236.23 0|1:25:6,17,2:6:225:17,2:672,82:-53.4815,0,-13.2819,-48.518,-11.6225,-66.3362 0|1:70:34,24,12:34:1364:24,12:941,485:-67.1316,0,-105.158,-37.3769,-72.3959,-146.154 dDocent_Contig_4194 20 . T A 118.541 . AB=0.10596;ABP=206.654;AC=1;AF=0.166667;AN=6;AO=18;CIGAR=1X;DP=216;DPB=216;DPRA=2.67647;EPP=42.0968;EPPR=432.962;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=730;QR=7950;RO=198;RPL=0;RPP=42.0968;RPPR=432.962;RPR=18;RUN=1;SAF=18;SAP=42.0968;SAR=0;SRF=198;SRP=432.962;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:151:135,16:135:5422:16:650:-13.3769,0,-442.344 0/0:31:29,2:29:1169:2:80:0,-1.74035,-97.8932 0/0:34:34,0:34:1359:0:0:0,-10.235,-122.568 dDocent_Contig_4195 58 . C T 10224.4 . AB=0.562874;ABP=25.9473;AC=3;AF=0.5;AN=6;AO=376;CIGAR=1X3M;DP=668;DPB=668;DPRA=0;EPP=819.484;EPPR=400.39;GTI=0;LEN=1;MEANALT=3;MQM=60;MQMR=60;NS=3;NUMALT=2;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=13300;QR=7222;RO=183;RPL=376;RPP=819.484;RPPR=400.39;RPR=0;RUN=1;SAF=376;SAP=819.484;SAR=0;SRF=183;SRP=400.39;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|1:436:107,69,258:107:4234:69,258:2619,9141:-712.295,-529.756,-857.45,0,-133.726,-270.799 0|1:100:27,13,59:27:1060:13,59:501,2078:-160.996,-127.979,-211.255,0,-46.0484,-69.4251 0|1:132:49,23,59:49:1928:23,59:866,2081:-154.667,-98.4528,-250.141,0,-87.6585,-140.851 dDocent_Contig_4196 182 . C T 124.28 . AB=0.205128;ABP=32.4644;AC=3;AF=0.5;AN=6;AO=8;CIGAR=1X;DP=39;DPB=39;DPRA=0;EPP=20.3821;EPPR=70.3259;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=317;QR=1211;RO=31;RPL=8;RPP=20.3821;RPPR=70.3259;RPR=0;RUN=1;SAF=0;SAP=20.3821;SAR=8;SRF=0;SRP=70.3259;SRR=31;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:17:14,3:14:531:3:118:-5.88407,0,-43.0063 0/1:10:7,3:7:283:3:118:-7.99221,0,-22.8322 0/1:12:10,2:10:397:2:81:-4.07337,0,-32.4744 dDocent_Contig_4197 7 . A G 60676.4 . AB=0.0141873;ABP=5060.34;AC=0;AF=0;AN=6;AO=35;CIGAR=1X1M1X4M;DP=2467;DPB=2467;DPRA=0;EPP=79.0118;EPPR=111.584;GTI=0;LEN=1;MEANALT=14.6667;MQM=60;MQMR=59.72;NS=3;NUMALT=4;ODDS=0;PAIRED=1;PAIREDR=0.68;PAO=0;PQA=0;PQR=0;PRO=0;QA=1160;QR=1921;RO=50;RPL=0;RPP=79.0118;RPPR=111.584;RPR=35;RUN=1;SAF=35;SAP=79.0118;SAR=0;SRF=50;SRP=111.584;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|0:1446:24,9,134,180,1019:24:914:9,134,180,1019:261,5247,7004,39117:-3701.02,-3687.47,-3759.72,-3314.51,-3368.69,-3349.13,-3133.26,-3187.44,-2814.48,-3154.03,-500.041,-554.225,-181.269,0,-268.247 0|0:395:9,22,51,41,252:9:339:22,51,41,252:751,1997,1564,9623:-904.636,-846.415,-867.563,-760.771,-727.613,-773.189,-779.609,-746.45,-660.807,-795.038,-118.8,-85.6438,0,-18.8298,-70.7121 0|0:626:17,4,68,52,423:17:668:4,68,52,423:148,2656,2020,16198:-1467.51,-1460.52,-1514.26,-1272.02,-1314.86,-1306.5,-1307.44,-1350.28,-1161.79,-1346.73,-145.646,-188.485,0,-35.4103,-73.2572 dDocent_Contig_4198 10 . C A 8358.4 . AB=0.80427;ABP=228.975;AC=4;AF=0.666667;AN=6;AO=259;CIGAR=1X;DP=317;DPB=317;DPRA=0;EPP=565.422;EPPR=128.956;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=10383;QR=2222;RO=58;RPL=0;RPP=565.422;RPPR=128.956;RPR=259;RUN=1;SAF=259;SAP=565.422;SAR=0;SRF=58;SRP=128.956;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:202:41,161:41:1572:161:6451:-519.51,0,-80.9142 1/1:36:3,33:3:114:33:1316:-108.074,-0.207863,0 0/1:79:14,65:14:536:65:2616:-211.778,0,-24.7876 dDocent_Contig_4199 60 . A C 910.877 . AB=0.417722;ABP=7.6556;AC=3;AF=0.5;AN=6;AO=33;CIGAR=1X;DP=79;DPB=79;DPRA=0;EPP=74.6689;EPPR=102.898;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=1326;QR=1834;RO=46;RPL=33;RPP=74.6689;RPPR=102.898;RPR=0;RUN=1;SAF=33;SAP=74.6689;SAR=0;SRF=46;SRP=102.898;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:42:18,24:18:715:24:971:-75.0423,0,-52.0334 0/1:28:22,6:22:875:6:235:-13.0902,0,-70.6338 0/1:9:6,3:6:244:3:120:-8.47804,0,-19.6296 dDocent_Contig_4200 11 . G A 8451.19 . AB=0.801802;ABP=266.463;AC=3;AF=0.5;AN=6;AO=267;CIGAR=1X;DP=333;DPB=333;DPRA=0;EPP=582.793;EPPR=146.327;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=10559;QR=2608;RO=66;RPL=0;RPP=582.793;RPPR=146.327;RPR=267;RUN=1;SAF=267;SAP=582.793;SAR=0;SRF=66;SRP=146.327;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:207:37,170:37:1467:170:6710:-541.308,0,-69.964 0/1:57:6,51:6:205:51:2018:-164.663,0,-1.61597 0/1:69:23,46:23:936:46:1831:-144.231,0,-63.7693 dDocent_Contig_4201 62 . C G 529.743 . AB=0.159292;ABP=230.88;AC=3;AF=0.5;AN=6;AO=36;CIGAR=1X;DP=226;DPB=226;DPRA=0;EPP=81.1833;EPPR=415.59;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=1392;QR=7461;RO=190;RPL=36;RPP=81.1833;RPPR=415.59;RPR=0;RUN=1;SAF=36;SAP=81.1833;SAR=0;SRF=190;SRP=415.59;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:115:95,20:95:3705:20:782:-36.074,0,-298.87 0/1:38:29,9:29:1151:9:349:-20.3289,0,-92.4354 0/1:73:66,7:66:2605:7:261:-1.86169,0,-212.614 dDocent_Contig_4202 16 . C T 970.767 . AB=0.116947;ABP=1288.95;AC=2;AF=0.333333;AN=6;AO=139;CIGAR=1X;DP=1472;DPB=1472;DPRA=0;EPP=254.979;EPPR=1104.14;GTI=0;LEN=1;MEANALT=2;MQM=49.2878;MQMR=57.2353;NS=3;NUMALT=1;ODDS=5.55112e-17;PAIRED=0.294964;PAIREDR=0.342383;PAO=0;PQA=0;PQR=0;PRO=0;QA=5612;QR=52557;RO=1326;RPL=0;RPP=304.845;RPPR=2882.38;RPR=139;RUN=1;SAF=133;SAP=254.979;SAR=6;SRF=1073;SRP=1104.14;SRR=253;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:675:595,76:595:23730:76:3061:-61.3807,0,-1896.2 0/0:463:441,21:441:17404:21:854:0,-68.7265,-1479.08 0/1:334:290,42:290:11423:42:1697:-39.2189,0,-917.939 dDocent_Contig_4203 11 . T A 1747.48 . AB=0.19788;ABP=227.378;AC=3;AF=0.5;AN=6;AO=56;CIGAR=1X1M;DP=283;DPB=283;DPRA=0;EPP=124.613;EPPR=320.045;GTI=0;LEN=1;MEANALT=3.33333;MQM=60;MQMR=60;NS=3;NUMALT=2;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=2218;QR=5873;RO=146;RPL=0;RPP=124.613;RPPR=320.045;RPR=56;RUN=1;SAF=56;SAP=124.613;SAR=0;SRF=146;SRP=320.045;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|1:172:99,33,30:99:3994:33,30:1329,1202:-79.7303,0,-319.299,-10.5132,-230.214,-330.714 0|1:22:9,11,2:9:348:11,2:436,82:-33.1667,0,-25.2503,-29.1057,-21.7892,-57.0798 0|1:89:38,24,24:38:1531:24,24:957,934:-67.3728,0,-118.971,-2.0715,-49.4554,-121.037 dDocent_Contig_4204 109 . G C 77.8805 . AB=0.24;ABP=17.6895;AC=1;AF=0.166667;AN=6;AO=11;CIGAR=1X;DP=114;DPB=114;DPRA=0;EPP=26.8965;EPPR=226.672;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=0.818182;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=354;QR=3376;RO=103;RPL=0;RPP=26.8965;RPPR=226.672;RPR=11;RUN=1;SAF=0;SAP=26.8965;SAR=11;SRF=0;SRP=226.672;SRR=103;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:67:64,3:64:2098:3:105:0,-10.3728,-179.294 0/0:22:20,2:20:635:2:62:0,-0.733809,-51.5612 0/1:25:19,6:19:643:6:187:-9.6117,0,-50.6626 dDocent_Contig_4207 15 . A C 283.384 . AB=0.189873;ABP=69.0066;AC=2;AF=0.333333;AN=6;AO=21;CIGAR=1X;DP=181;DPB=181;DPRA=0;EPP=48.6112;EPPR=350.446;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=6.93889e-18;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=856;QR=6450;RO=160;RPL=0;RPP=48.6112;RPPR=350.446;RPR=21;RUN=1;SAF=21;SAP=48.6112;SAR=0;SRF=160;SRP=350.446;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:102:96,6:96:3869:6:246:0,-8.18494,-325.675 0/1:43:37,6:37:1500:6:242:-9.21303,0,-122.293 0/1:36:27,9:27:1081:9:368:-22.6483,0,-86.7342 dDocent_Contig_4208 97 . T C 43.342 . AB=0.172414;ABP=30.0414;AC=2;AF=0.333333;AN=6;AO=5;CIGAR=1X;DP=38;DPB=38;DPRA=1.61111;EPP=13.8677;EPPR=74.6689;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=176;QR=1163;RO=33;RPL=5;RPP=13.8677;RPPR=74.6689;RPR=0;RUN=1;SAF=5;SAP=13.8677;SAR=0;SRF=33;SRP=74.6689;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:15:12,3:12:424:3:106:-5.37365,0,-33.9815 0/0:9:9,0:9:322:0:0:0,-2.70927,-29.3242 0/1:14:12,2:12:417:2:70:-2.43298,0,-33.6489 dDocent_Contig_4209 41 . T G 5513.41 . AB=0.0471014;ABP=494.739;AC=0;AF=0;AN=6;AO=13;CIGAR=1X3M2I3M;DP=276;DPB=333.429;DPRA=0;EPP=31.2394;EPPR=165.871;GTI=0;LEN=1;MEANALT=2.66667;MQM=60;MQMR=60;NS=3;NUMALT=2;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=494;QR=2907;RO=75;RPL=0;RPP=31.2394;RPPR=165.871;RPR=13;RUN=1;SAF=13;SAP=31.2394;SAR=0;SRF=75;SRP=165.871;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|0:140:26,4,107:26:994:4,107:154,4155:-333.533,-328.715,-409.064,0,-68.9069,-49.3418 0|0:62:14,6,42:14:546:6,42:230,1629:-129.606,-114.944,-158.018,0,-26.0094,-32.2417 0|0:74:35,3,33:35:1367:3,33:110,1270:-93.7253,-95.2717,-206.75,0,-103.403,-102.458 dDocent_Contig_4210 17 . G A 5422.23 . AB=0.483254;ABP=3.5194;AC=6;AF=1;AN=6;AO=101;CIGAR=1X7M;DP=209;DPB=187;DPRA=0;EPP=205.301;EPPR=39.9253;GTI=0;LEN=1;MEANALT=2.66667;MQM=60;MQMR=60;NS=3;NUMALT=2;ODDS=2.77556e-17;PAIRED=0.960396;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=4041;QR=655;RO=17;RPL=0;RPP=222.329;RPPR=39.9253;RPR=101;RUN=1;SAF=99;SAP=205.301;SAR=2;SRF=17;SRP=39.9253;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 1|1:110:6,55,49:6:229:55,49:2125,1942:-307.513,-141.059,-143.288,-149.476,0,-153.514 1|1:42:4,21,16:4:152:21,16:822,644:-105.902,-40.6283,-46.7681,-54.0236,0,-61.6719 1|1:57:7,12,36:7:274:12,36:474,1455:-134.33,-97.4342,-116.35,-16.477,0,-28.1684 dDocent_Contig_4211 12 . T C 5392.63 . AB=0.370019;ABP=80.3469;AC=3;AF=0.5;AN=6;AO=195;CIGAR=1X;DP=527;DPB=527;DPRA=0;EPP=426.447;EPPR=721.768;GTI=0;LEN=1;MEANALT=1.33333;MQM=60;MQMR=56.8459;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=0.749245;PAO=0;PQA=0;PQR=0;PRO=0;QA=7813;QR=13286;RO=331;RPL=0;RPP=426.447;RPPR=721.768;RPR=195;RUN=1;SAF=195;SAP=426.447;SAR=0;SRF=331;SRP=721.768;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:243:127,115:127:5110:115:4641:-344.335,0,-384.821 0/1:146:90,56:90:3618:56:2239:-157.731,0,-280.143 0/1:138:114,24:114:4558:24:933:-42.7187,0,-362.001 dDocent_Contig_4212 98 . N C 6974.12 . AB=0;ABP=0;AC=6;AF=1;AN=6;AO=229;CIGAR=1X;DP=233;DPB=233;DPRA=0;EPP=500.277;EPPR=0;GTI=0;LEN=1;MEANALT=1.66667;MQM=60;MQMR=0;NS=3;NUMALT=1;ODDS=0;PAIRED=0.991266;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=7739;QR=0;RO=0;RPL=229;RPP=500.277;RPPR=0;RPR=0;RUN=1;SAF=229;SAP=500.277;SAR=0;SRF=0;SRP=0;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 1/1:141:0,137:0:0:137:4599:-413.753,-41.2411,0 1/1:27:0,27:0:0:27:912:-82.3907,-8.12781,0 1/1:65:0,65:0:0:65:2228:-200.791,-19.567,0 dDocent_Contig_4214 24 . G A 42.2916 . AB=0.137931;ABP=36.0317;AC=1;AF=0.166667;AN=6;AO=4;CIGAR=1X;DP=80;DPB=80;DPRA=1.13725;EPP=11.6962;EPPR=168.042;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=1.73472e-18;PAIRED=0;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=160;QR=2992;RO=76;RPL=0;RPP=11.6962;RPPR=168.042;RPR=4;RUN=1;SAF=4;SAP=11.6962;SAR=0;SRF=76;SRP=168.042;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:29:29,0:29:1157:0:0:0,-8.72987,-104.407 0/0:22:22,0:22:858:0:0:0,-6.62266,-77.5277 0/1:29:25,4:25:977:4:160:-6.05305,0,-79.4985 dDocent_Contig_4216 136 . T A 120.734 . AB=0.222222;ABP=27.1378;AC=2;AF=0.333333;AN=6;AO=10;CIGAR=1X;DP=62;DPB=62;DPRA=0;EPP=24.725;EPPR=115.927;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=358;QR=1823;RO=52;RPL=0;RPP=24.725;RPPR=115.927;RPR=10;RUN=1;SAF=0;SAP=24.725;SAR=10;SRF=0;SRP=115.927;SRR=52;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:26:24,2:24:838:2:72:0,-0.990144,-68.8969 0/1:12:9,3:9:324:3:101:-5.81086,0,-25.8925 0/1:24:19,5:19:661:5:185:-9.78529,0,-52.5816 dDocent_Contig_4217 107 . N G 175.81 . AB=0;ABP=0;AC=4;AF=1;AN=4;AO=6;CIGAR=1X;DP=6;DPB=6;DPRA=0;EPP=16.0391;EPPR=0;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=0;NS=2;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=185;QR=0;RO=0;RPL=0;RPP=16.0391;RPPR=0;RPR=6;RUN=1;SAF=0;SAP=16.0391;SAR=6;SRF=0;SRP=0;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 1/1:4:0,4:0:0:4:116:-10.7267,-1.20412,0 1/1:2:0,2:0:0:2:69:-6.55266,-0.60206,0 ./.:.:.:.:.:.:.:. dDocent_Contig_4218 24 . A C 71.3426 . AB=0.333333;ABP=5.9056;AC=1;AF=0.166667;AN=6;AO=4;CIGAR=1X;DP=32;DPB=32;DPRA=1.2;EPP=3.0103;EPPR=63.8115;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=0;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=136;QR=1106;RO=28;RPL=4;RPP=11.6962;RPPR=63.8115;RPR=0;RUN=1;SAF=2;SAP=3.0103;SAR=2;SRF=28;SRP=63.8115;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:11:11,0:11:428:0:0:0,-3.31133,-38.8672 0/1:12:8,4:8:324:4:136:-8.95816,0,-25.9168 0/0:9:9,0:9:354:0:0:0,-2.70927,-32.2206 dDocent_Contig_4219 107 . N A 1223.81 . AB=0;ABP=0;AC=6;AF=1;AN=6;AO=39;CIGAR=1X;DP=39;DPB=39;DPRA=0;EPP=87.6977;EPPR=0;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=0;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=1342;QR=0;RO=0;RPL=0;RPP=87.6977;RPPR=0;RPR=39;RUN=1;SAF=0;SAP=87.6977;SAR=39;SRF=0;SRP=0;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 1/1:33:0,33:0:0:33:1132:-102.186,-9.93399,0 1/1:2:0,2:0:0:2:70:-6.6474,-0.60206,0 1/1:4:0,4:0:0:4:140:-12.9449,-1.20412,0 dDocent_Contig_4220 96 . G A 8458.05 . AB=0.843137;ABP=55.1682;AC=5;AF=0.833333;AN=6;AO=295;CIGAR=1X;DP=317;DPB=317;DPRA=0;EPP=643.595;EPPR=50.7827;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=10060;QR=753;RO=22;RPL=295;RPP=643.595;RPPR=50.7827;RPR=0;RUN=1;SAF=295;SAP=643.595;SAR=0;SRF=22;SRP=50.7827;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 1/1:159:12,147:12:407:147:5061:-418.711,-10.9073,0 0/1:51:8,43:8:278:43:1474:-117.602,0,-10.0054 1/1:107:2,105:2:68:105:3525:-311.015,-25.7523,0 dDocent_Contig_4222 8 . A T 4320.72 . AB=0.503289;ABP=3.03887;AC=3;AF=0.5;AN=6;AO=153;CIGAR=1X;DP=304;DPB=304;DPRA=0;EPP=335.246;EPPR=330.903;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=5871;QR=5799;RO=151;RPL=0;RPP=335.246;RPPR=330.903;RPR=153;RUN=1;SAF=153;SAP=335.246;SAR=0;SRF=151;SRP=330.903;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:120:53,67:53:2036:67:2576:-195.909,0,-147.352 0/1:86:51,35:51:1963:35:1333:-94.3686,0,-151.022 0/1:98:47,51:47:1800:51:1962:-147.317,0,-132.753 dDocent_Contig_4223 60 . T A 38.345 . AB=0.145833;ABP=55.3066;AC=1;AF=0.166667;AN=6;AO=8;CIGAR=1X;DP=134;DPB=134;DPRA=3.96667;EPP=20.3821;EPPR=276.616;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=3.46945e-18;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=256;QR=4654;RO=126;RPL=8;RPP=20.3821;RPPR=276.616;RPR=0;RUN=1;SAF=8;SAP=20.3821;SAR=0;SRF=126;SRP=276.616;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:71:70,1:70:2652:1:36:0,-17.7749,-235.276 0/0:15:15,0:15:556:0:0:0,-4.51545,-50.3773 0/1:48:41,7:41:1446:7:220:-5.65835,0,-115.978 dDocent_Contig_4224 75 . A G 147.562 . AB=0.157143;ABP=74.4828;AC=2;AF=0.333333;AN=6;AO=11;CIGAR=1X;DP=76;DPB=76;DPRA=5.83333;EPP=26.8965;EPPR=144.156;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=3.46945e-18;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=429;QR=2550;RO=65;RPL=11;RPP=26.8965;RPPR=144.156;RPR=0;RUN=1;SAF=11;SAP=26.8965;SAR=0;SRF=65;SRP=144.156;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:58:52,6:52:2048:6:241:-4.60694,0,-167.057 0/0:6:6,0:6:235:0:0:0,-1.80618,-21.5205 0/1:12:7,5:7:267:5:188:-13.6717,0,-20.7802 dDocent_Contig_4225 16 . G A 164.77 . AB=0.214286;ABP=32.7905;AC=2;AF=0.333333;AN=6;AO=9;CIGAR=1X;DP=58;DPB=58;DPRA=1.3125;EPP=22.5536;EPPR=109.412;GTI=0;LEN=1;MEANALT=1;MQM=56.7778;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=0.888889;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=363;QR=1939;RO=49;RPL=0;RPP=22.5536;RPPR=109.412;RPR=9;RUN=1;SAF=9;SAP=22.5536;SAR=0;SRF=49;SRP=109.412;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:30:23,7:23:905:7:285:-16.2066,0,-72.7178 0/1:12:10,2:10:388:2:78:-3.79094,0,-31.6598 0/0:16:16,0:16:646:0:0:0,-4.81648,-58.4732 dDocent_Contig_4226 9 . C A 5926.62 . AB=0.9;ABP=72.4974;AC=5;AF=0.833333;AN=6;AO=188;CIGAR=1X;DP=203;DPB=203;DPRA=0;EPP=411.247;EPPR=35.5824;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=7153;QR=578;RO=15;RPL=0;RPP=411.247;RPPR=35.5824;RPR=188;RUN=1;SAF=188;SAP=411.247;SAR=0;SRF=15;SRP=35.5824;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 1/1:118:7,111:7:272:111:4233:-356.202,-10.6743,0 1/1:35:3,32:3:111:32:1199:-97.8462,-0.182562,0 0/1:50:5,45:5:195:45:1721:-140.098,0,-2.8727 dDocent_Contig_4227 27 . C A 1326.26 . AB=0.528736;ABP=3.63429;AC=3;AF=0.5;AN=6;AO=46;CIGAR=1X;DP=87;DPB=87;DPRA=0;EPP=102.898;EPPR=92.0407;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=1815;QR=1660;RO=41;RPL=0;RPP=102.898;RPPR=92.0407;RPR=46;RUN=1;SAF=46;SAP=102.898;SAR=0;SRF=41;SRP=92.0407;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:53:21,32:21:856:32:1261:-97.7947,0,-61.3948 0/1:17:11,6:11:438:6:229:-15.8519,0,-34.6529 0/1:17:9,8:9:366:8:325:-24.5021,0,-28.1876 dDocent_Contig_4228 1 . N A 63.6413 . AB=0;ABP=0;AC=2;AF=1;AN=2;AO=2;CIGAR=1X;DP=2;DPB=2;DPRA=0;EPP=7.35324;EPPR=0;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=0;NS=1;NUMALT=1;ODDS=5.99146;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=67;QR=0;RO=0;RPL=0;RPP=7.35324;RPPR=0;RPR=2;RUN=1;SAF=0;SAP=7.35324;SAR=2;SRF=0;SRP=0;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 1/1:2:0,2:0:0:2:67:-6.36304,-0.60206,0 ./.:.:.:.:.:.:.:. ./.:.:.:.:.:.:.:. dDocent_Contig_4229 86 . G T 124.023 . AB=0.3;ABP=9.95901;AC=1;AF=0.166667;AN=6;AO=6;CIGAR=2X;DP=47;DPB=47;DPRA=1.48148;EPP=16.0391;EPPR=92.0407;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=221;QR=1411;RO=41;RPL=6;RPP=16.0391;RPPR=92.0407;RPR=0;RUN=1;SAF=6;SAP=16.0391;SAR=0;SRF=41;SRP=92.0407;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|0:21:21,0:21:729:0:0:0,-6.32163,-65.9295 0|1:20:14,6:14:472:6:221:-14.2262,0,-36.7809 0|0:6:6,0:6:210:0:0:0,-1.80618,-19.2421 dDocent_Contig_4230 27 . C T 219.207 . AB=0.243902;ABP=26.3669;AC=1;AF=0.166667;AN=6;AO=15;CIGAR=1X;DP=143;DPB=143;DPRA=2.47917;EPP=35.5824;EPPR=280.959;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=601;QR=5130;RO=128;RPL=0;RPP=35.5824;RPPR=280.959;RPR=15;RUN=1;SAF=15;SAP=35.5824;SAR=0;SRF=128;SRP=280.959;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:78:73,5:73:2923:5:204:0,-4.73631,-244.424 0/1:41:31,10:31:1240:10:397:-23.7446,0,-99.5291 0/0:24:24,0:24:967:0:0:0,-7.22472,-87.3296 dDocent_Contig_4231 11 . T C 188.858 . AB=0.13913;ABP=133.091;AC=3;AF=0.5;AN=6;AO=16;CIGAR=1X;DP=115;DPB=115;DPRA=0;EPP=37.7539;EPPR=217.986;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=642;QR=3916;RO=99;RPL=0;RPP=37.7539;RPPR=217.986;RPR=16;RUN=1;SAF=16;SAP=37.7539;SAR=0;SRF=99;SRP=217.986;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:66:58,8:58:2292:8:327:-9.93213,0,-186.583 0/1:19:17,2:17:665:2:82:-2.06011,0,-54.4607 0/1:30:24,6:24:959:6:233:-12.3057,0,-77.5792 dDocent_Contig_4232 10 . T G 1460.59 . AB=0.285714;ABP=56.0563;AC=1;AF=0.166667;AN=6;AO=38;CIGAR=1X3M1X3M;DP=133;DPB=101.75;DPRA=0;EPP=85.5263;EPPR=100.727;GTI=0;LEN=1;MEANALT=2;MQM=33.4474;MQMR=60;NS=3;NUMALT=2;ODDS=0;PAIRED=0.552632;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=1106;QR=1761;RO=45;RPL=0;RPP=85.5263;RPPR=100.727;RPR=38;RUN=1;SAF=38;SAP=85.5263;SAR=0;SRF=45;SRP=100.727;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 1|0:67:12,24,31:12:470:24,31:716,1176:-106.77,-57.7721,-89.1966,-13.8948,0,-43.2467 0|0:22:8,6,8:8:309:6,8:170,278:-20.2426,-10.6475,-34.2391,0,-13.4657,-23.0441 0|0:44:25,8,11:25:982:8,11:220,393:-24.5691,-16.0045,-94.3888,0,-64.7706,-77.5588 dDocent_Contig_4233 7 . A G 190.836 . AB=0.075;ABP=65.7659;AC=1;AF=0.166667;AN=6;AO=3;CIGAR=1X3M1X;DP=91;DPB=91;DPRA=2.5;EPP=9.52472;EPPR=146.327;GTI=0;LEN=1;MEANALT=4;MQM=60;MQMR=59.7576;NS=3;NUMALT=4;ODDS=1.38778e-17;PAIRED=0;PAIREDR=0.984848;PAO=0;PQA=0;PQR=0;PRO=0;QA=112;QR=2535;RO=66;RPL=0;RPP=9.52472;RPPR=146.327;RPR=3;RUN=1;SAF=3;SAP=9.52472;SAR=0;SRF=66;SRP=146.327;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|0:16:16,0,0,0,0:16:620:0,0,0,0:0,0,0,0:0,-4.81648,-56.1401,-4.81648,-56.1401,-56.1401,-4.81648,-56.1401,-56.1401,-56.1401,-4.81648,-56.1401,-56.1401,-56.1401,-56.1401 0|1:40:29,5,3,0,2:29:1113:5,3,0,2:165,112,0,82:-4.58532,0,-89.7713,-4.13974,-82.1076,-94.5358,-13.3152,-91.2765,-95.4389,-104.608,-6.58614,-84.5568,-88.719,-97.8886,-97.2865 0|0:35:21,2,0,2,8:21:802:2,0,2,8:59,0,69,318:-18.0208,-19.6451,-84.8557,-24.3424,-85.4578,-90.1604,-18.7403,-79.856,-84.5582,-83.9562,0,-61.1393,-65.8405,-60.2388,-63.4323 dDocent_Contig_4234 36 . T G 296.436 . AB=0.191489;ABP=80.7213;AC=2;AF=0.333333;AN=6;AO=21;CIGAR=3X;DP=138;DPB=138;DPRA=0;EPP=48.6112;EPPR=257.073;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=794;QR=4636;RO=117;RPL=0;RPP=48.6112;RPPR=257.073;RPR=21;RUN=1;SAF=21;SAP=48.6112;SAR=0;SRF=117;SRP=257.073;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|1:71:56,15:56:2225:15:559:-29.2709,0,-179.051 0|1:23:20,3:20:780:3:116:-3.89371,0,-63.5942 0|0:44:41,3:41:1631:3:119:0,-2.14993,-135.932 dDocent_Contig_4235 42 . A G 3285.24 . AB=0.128205;ABP=330.791;AC=0;AF=0;AN=6;AO=35;CIGAR=1X3M1I2M;DP=273;DPB=301.167;DPRA=0;EPP=79.0118;EPPR=226.672;GTI=0;LEN=1;MEANALT=2.66667;MQM=60;MQMR=60;NS=3;NUMALT=3;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=1359;QR=3879;RO=103;RPL=0;RPP=79.0118;RPPR=226.672;RPR=35;RUN=1;SAF=35;SAP=79.0118;SAR=0;SRF=103;SRP=226.672;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|0:126:58,13,0,55:58:2204:13,0,55:499,0,1903:-137.135,-113.634,-290.476,-154.595,-294.39,-335.346,0,-139.781,-180.735,-164.179 0|0:57:14,7,0,36:14:526:7,0,36:275,0,1290:-100.958,-82.5479,-123.536,-105.173,-125.643,-148.266,0,-20.4543,-43.0791,-32.242 0|0:90:31,15,5,38:31:1149:15,5,38:585,203,1298:-95.9533,-57.1887,-146.684,-88.5386,-134.454,-181.041,0,-45.8978,-77.2431,-82.5491 dDocent_Contig_4236 147 . G T 95.2668 . AB=0.163265;ABP=51.2702;AC=1;AF=0.166667;AN=6;AO=9;CIGAR=1X;DP=76;DPB=76;DPRA=3.72222;EPP=22.5536;EPPR=148.499;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=324;QR=2637;RO=67;RPL=0;RPP=22.5536;RPPR=148.499;RPR=9;RUN=1;SAF=0;SAP=22.5536;SAR=9;SRF=0;SRP=148.499;SRR=67;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:49:41,8:41:1607:8:283:-11.0495,0,-130.103 0/0:9:9,0:9:363:0:0:0,-2.70927,-33.0347 0/0:18:17,1:17:667:1:41:0,-1.32397,-56.2589 dDocent_Contig_4237 115 . C T 378.399 . AB=0.128931;ABP=383.332;AC=3;AF=0.5;AN=6;AO=41;CIGAR=1X;DP=318;DPB=318;DPRA=0;EPP=92.0407;EPPR=604.508;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=1.38778e-17;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=1534;QR=9182;RO=277;RPL=0;RPP=92.0407;RPPR=604.508;RPR=41;RUN=1;SAF=0;SAP=92.0407;SAR=41;SRF=0;SRP=604.508;SRR=277;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:154:133,21:133:4423:21:760:-22.3579,0,-351.907 0/1:83:73,10:73:2397:10:382:-9.74931,0,-191.001 0/1:81:71,10:71:2362:10:392:-11.2555,0,-188.456 dDocent_Contig_4238 14 . C A 5492.94 . AB=0.69685;ABP=88.5013;AC=3;AF=0.5;AN=6;AO=177;CIGAR=1X;DP=254;DPB=254;DPRA=0;EPP=387.361;EPPR=170.214;GTI=0;LEN=1;MEANALT=1;MQM=59.7853;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=0.988701;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=7022;QR=3083;RO=77;RPL=0;RPP=387.361;RPPR=170.214;RPR=177;RUN=1;SAF=177;SAP=387.361;SAR=0;SRF=77;SRP=170.214;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:142:45,97:45:1807:97:3851:-303.863,0,-120.095 0/1:35:6,29:6:237:29:1148:-93.0696,0,-11.1669 0/1:77:26,51:26:1039:51:2023:-157.885,0,-70.62 dDocent_Contig_4239 11 . T G 52849.1 . AB=0.810177;ABP=1464.59;AC=6;AF=1;AN=6;AO=1417;CIGAR=1X4M;DP=1749;DPB=1749;DPRA=0;EPP=3079.99;EPPR=52.9542;GTI=0;LEN=1;MEANALT=9;MQM=59.9901;MQMR=60;NS=3;NUMALT=2;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=56554;QR=900;RO=23;RPL=0;RPP=3079.99;RPPR=52.9542;RPR=1417;RUN=1;SAF=1417;SAP=3079.99;SAR=0;SRF=23;SRP=52.9542;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 1|1:1005:13,131,811:13:516:131,811:5118,32470:-3049.09,-2632.26,-2635.3,-378.268,0,-176.608 1|1:277:1,34,227:1:25:34,227:1310,9017:-847.494,-740.236,-731.949,-105.618,0,-39.2305 1|1:467:9,58,379:9:359:58,379:2260,15067:-1393.86,-1210.82,-1222.92,-156.18,0,-71.6548 dDocent_Contig_4240 13 . T A 273.802 . AB=0.241379;ABP=36.7056;AC=3;AF=0.5;AN=6;AO=14;CIGAR=2X;DP=58;DPB=58;DPRA=0;EPP=33.4109;EPPR=98.5551;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=3.46945e-18;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=547;QR=1669;RO=44;RPL=0;RPP=33.4109;RPPR=98.5551;RPR=14;RUN=1;SAF=14;SAP=33.4109;SAR=0;SRF=44;SRP=98.5551;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|1:21:13,8:13:493:8:311:-22.031,0,-38.3942 0|1:12:10,2:10:377:2:80:-3.97922,0,-30.6705 0|1:25:21,4:21:799:4:156:-6.89137,0,-64.7102 dDocent_Contig_4241 24 . G A 201.395 . AB=0.346154;ABP=8.35546;AC=3;AF=0.5;AN=6;AO=9;CIGAR=1X;DP=26;DPB=26;DPRA=0;EPP=22.5536;EPPR=39.9253;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=0.555556;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=359;QR=682;RO=17;RPL=0;RPP=22.5536;RPPR=39.9253;RPR=9;RUN=1;SAF=9;SAP=22.5536;SAR=0;SRF=17;SRP=39.9253;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:13:8,5:8:326:5:196:-14.0995,0,-25.7965 0/1:10:7,3:7:274:3:122:-8.36219,0,-22.0146 0/1:3:2,1:2:82:1:41:-3.19148,0,-6.87659 dDocent_Contig_4242 9 . A T 2646.89 . AB=0.484694;ABP=3.40914;AC=3;AF=0.5;AN=6;AO=95;CIGAR=1X;DP=196;DPB=196;DPRA=0;EPP=209.3;EPPR=204.957;GTI=0;LEN=1;MEANALT=1.66667;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=1.38778e-17;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=3630;QR=3551;RO=93;RPL=0;RPP=209.3;RPPR=204.957;RPR=95;RUN=1;SAF=95;SAP=209.3;SAR=0;SRF=93;SRP=204.957;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:103:56,42:56:2140:42:1602:-114.557,0,-162.938 0/1:15:6,9:6:220:9:342:-26.62,0,-15.6386 0/1:78:31,44:31:1191:44:1686:-129.036,0,-84.5238 dDocent_Contig_4243 19 . A G 1053.53 . AB=0.131313;ABP=119.897;AC=1;AF=0.166667;AN=6;AO=13;CIGAR=1X1M1X3M2D10M;DP=128;DPB=126.333;DPRA=0;EPP=31.2394;EPPR=109.412;GTI=0;LEN=1;MEANALT=4;MQM=60;MQMR=60;NS=3;NUMALT=4;ODDS=2.77556e-17;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=489;QR=1936;RO=49;RPL=0;RPP=31.2394;RPPR=109.412;RPR=13;RUN=1;SAF=13;SAP=31.2394;SAR=0;SRF=49;SRP=109.412;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|0:70:20,4,19,26,0:20:795:4,19,26,0:142,750,995,0:-75.6279,-70.0849,-134.338,-19.9326,-73.8303,-79.6742,0,-53.8959,-3.74649,-57.6316,-81.6485,-135.542,-85.3938,-65.4584,-147.106 0|0:29:18,0,3,5,2:18:702:0,3,5,2:0,113,189,80:-10.0678,-15.4863,-73.1895,-6.23032,-63.9322,-63.0291,0,-57.7005,-48.4438,-56.1954,-8.89252,-66.5984,-57.3411,-51.1094,-65.9964 0|1:29:11,9,2,6,1:11:439:9,2,6,1:347,74,231,40:-25.1799,0,-33.4557,-22.44,-30.1143,-57.9994,-9.52408,-17.201,-39.6365,-43.8813,-25.1953,-32.8694,-55.3061,-42.392,-61.0566 dDocent_Contig_4244 15 . C T 562.775 . AB=0.25;ABP=55.1256;AC=1;AF=0.166667;AN=6;AO=26;CIGAR=1X;DP=180;DPB=180;DPRA=2.40323;EPP=59.4686;EPPR=337.417;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=6.93889e-18;PAIRED=1;PAIREDR=0.987013;PAO=0;PQA=0;PQR=0;PRO=0;QA=1042;QR=6197;RO=154;RPL=0;RPP=59.4686;RPPR=337.417;RPR=26;RUN=1;SAF=26;SAP=59.4686;SAR=0;SRF=154;SRP=337.417;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:96:72,24:72:2893:24:960:-57.8004,0,-231.566 0/0:31:31,0:31:1249:0:0:0,-9.33193,-112.677 0/0:53:51,2:51:2055:2:82:0,-8.17491,-177.345 dDocent_Contig_4245 27 . G T 234.719 . AB=0.275;ABP=20.5992;AC=3;AF=0.5;AN=6;AO=11;CIGAR=1X;DP=40;DPB=40;DPRA=0;EPP=26.8965;EPPR=65.983;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=58.5172;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=0.965517;PAO=0;PQA=0;PQR=0;PRO=0;QA=443;QR=1153;RO=29;RPL=0;RPP=26.8965;RPPR=65.983;RPR=11;RUN=1;SAF=11;SAP=26.8965;SAR=0;SRF=29;SRP=65.983;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:15:11,4:11:442:4:160:-10.268,0,-35.6195 0/1:12:7,5:7:271:5:201:-14.8585,0,-21.1418 0/1:13:11,2:11:440:2:82:-3.86629,0,-33.953 dDocent_Contig_4246 8 . C T 991.528 . AB=0.402174;ABP=10.6577;AC=3;AF=0.5;AN=6;AO=37;CIGAR=3X;DP=92;DPB=92;DPRA=0;EPP=83.3548;EPPR=107.241;GTI=0;LEN=1;MEANALT=2;MQM=60;MQMR=60;NS=3;NUMALT=2;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=1435;QR=1848;RO=48;RPL=0;RPP=83.3548;RPPR=107.241;RPR=37;RUN=1;SAF=37;SAP=83.3548;SAR=0;SRF=48;SRP=107.241;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|1:60:38,3,19:38:1462:3,19:115,738:-49.2087,-51.2097,-170.337,0,-110.596,-114.315 0|1:9:1,0,8:1:39:0,8:0,308:-25.3731,-25.6741,-28.8805,0,-3.59553,-1.18729 0|1:23:9,3,10:9:347:3,10:117,389:-29.2594,-22.3509,-49.9415,0,-18.8737,-25.482 dDocent_Contig_4247 16 . G T 343.307 . AB=0.202128;ABP=75.4543;AC=2;AF=0.333333;AN=6;AO=19;CIGAR=1X;DP=158;DPB=158;DPRA=0.734375;EPP=8.61041;EPPR=304.845;GTI=0;LEN=1;MEANALT=1;MQM=49.5789;MQMR=59.5324;NS=3;NUMALT=1;ODDS=6.93889e-18;PAIRED=0.368421;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=721;QR=5553;RO=139;RPL=0;RPP=44.2683;RPPR=304.845;RPR=19;RUN=1;SAF=13;SAP=8.61041;SAR=6;SRF=139;SRP=304.845;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:64:64,0:64:2545:0:0:0,-19.2659,-229.16 0/1:47:32,15:32:1279:15:564:-36.1525,0,-101.204 0/1:47:43,4:43:1729:4:157:-0.164697,0,-141.643 dDocent_Contig_4249 12 . T A 45.7131 . AB=0.133333;ABP=55.5599;AC=3;AF=0.5;AN=6;AO=6;CIGAR=1X;DP=45;DPB=45;DPRA=0;EPP=16.0391;EPPR=87.6977;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=3.46945e-18;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=245;QR=1583;RO=39;RPL=0;RPP=16.0391;RPPR=87.6977;RPR=6;RUN=1;SAF=6;SAP=16.0391;SAR=0;SRF=39;SRP=87.6977;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:21:18,3:18:730:3:123:-5.14316,0,-59.7003 0/1:8:7,1:7:284:1:41:-1.68633,0,-23.5252 0/1:16:14,2:14:569:2:81:-2.86925,0,-46.7354 dDocent_Contig_4250 107 . N C 232.941 . AB=0;ABP=0;AC=4;AF=1;AN=4;AO=8;CIGAR=1X;DP=8;DPB=8;DPRA=0;EPP=20.3821;EPPR=0;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=0;NS=2;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=249;QR=0;RO=0;RPL=0;RPP=20.3821;RPPR=0;RPR=8;RUN=1;SAF=0;SAP=20.3821;SAR=8;SRF=0;SRP=0;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 1/1:7:0,7:0:0:7:222:-20.2918,-2.10721,0 1/1:1:0,1:0:0:1:27:-2.69978,-0.30103,0 ./.:.:.:.:.:.:.:. dDocent_Contig_4252 38 . G A 186.323 . AB=0.108696;ABP=308.905;AC=1;AF=0.166667;AN=6;AO=33;CIGAR=1X;DP=381;DPB=381;DPRA=0;EPP=74.6689;EPPR=758.683;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=1306;QR=13931;RO=348;RPL=0;RPP=74.6689;RPPR=758.683;RPR=33;RUN=1;SAF=33;SAP=74.6689;SAR=0;SRF=348;SRP=758.683;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:230:205,25:205:8196:25:990:-20.1542,0,-667.94 0/0:67:66,1:66:2635:1:41:0,-16.0744,-233.182 0/0:84:77,7:77:3100:7:275:0,-0.170189,-253.953 dDocent_Contig_4254 90 . A G 573.676 . 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AB=0.544118;ABP=5.30951;AC=3;AF=0.5;AN=6;AO=74;CIGAR=1M3I3M4X2M1X;DP=136;DPB=156.182;DPRA=0;EPP=163.699;EPPR=137.642;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=2861;QR=2397;RO=62;RPL=0;RPP=163.699;RPPR=137.642;RPR=74;RUN=1;SAF=74;SAP=163.699;SAR=0;SRF=62;SRP=137.642;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|1:90:34,56:34:1321:56:2173:-168.691,0,-92.0764 0|1:18:14,4:14:540:4:156:-8.99858,0,-43.526 0|1:28:14,14:14:536:14:532:-39.7908,0,-40.1484 dDocent_Contig_4258 7 . A T 178.916 . AB=0.0832562;ABP=1633.73;AC=1;AF=0.166667;AN=6;AO=140;CIGAR=1X3M;DP=1986;DPB=1986;DPRA=0;EPP=44.9507;EPPR=1213.14;GTI=0;LEN=1;MEANALT=6;MQM=58.35;MQMR=59.0461;NS=3;NUMALT=2;ODDS=2.22045e-16;PAIRED=0;PAIREDR=0.11909;PAO=0;PQA=0;PQR=0;PRO=0;QA=5423;QR=63616;RO=1671;RPL=0;RPP=307.016;RPPR=3631.54;RPR=140;RUN=1;SAF=96;SAP=44.9507;SAR=44;SRF=1318;SRP=1213.14;SRR=353;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|0:533:475,18,25:475:18245:18,25:674,969:0,-89.3134,-1576.96,-63.9591,-1503.35,-1549.51 0|1:1081:883,87,90:883:33445:87,90:3183,3479:-19.7155,-35.9494,-2738.15,0,-2478.83,-2701.32 0|0:372:313,15,25:313:11926:15,25:550,975:0,-49.4446,-1021.13,-14.2037,-945.636,-982.893 dDocent_Contig_4259 10 . T C 12578.3 . 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AB=0.389831;ABP=9.23028;AC=3;AF=0.5;AN=6;AO=23;CIGAR=1X;DP=59;DPB=59;DPRA=0;EPP=52.9542;EPPR=81.1833;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=889;QR=1454;RO=36;RPL=23;RPP=52.9542;RPPR=81.1833;RPR=0;RUN=1;SAF=0;SAP=52.9542;SAR=23;SRF=0;SRP=81.1833;SRR=36;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:28:15,13:15:609:13:494:-36.3619,0,-46.7189 0/1:20:12,8:12:481:8:313:-22.5128,0,-37.619 0/1:11:9,2:9:364:2:82:-4.46835,0,-29.8134 dDocent_Contig_4267 205 . C T 199.825 . AB=0.168539;ABP=87.9417;AC=2;AF=0.333333;AN=6;AO=22;CIGAR=1X;DP=197;DPB=197;DPRA=0;EPP=50.7827;EPPR=383.018;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=810;QR=6376;RO=175;RPL=22;RPP=50.7827;RPPR=383.018;RPR=0;RUN=1;SAF=0;SAP=50.7827;SAR=22;SRF=0;SRP=383.018;SRR=175;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:108:101,7:101:3705:7:259:0,-8.84513,-309.963 0/1:54:45,9:45:1606:9:329:-13.7033,0,-128.572 0/1:35:29,6:29:1065:6:222:-9.80201,0,-85.6272 dDocent_Contig_4268 84 . G A 2391.4 . AB=0.766667;ABP=77.1299;AC=3;AF=0.5;AN=6;AO=92;CIGAR=1X;DP=120;DPB=120;DPRA=0;EPP=202.786;EPPR=63.8115;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=6.93889e-18;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=3109;QR=974;RO=28;RPL=92;RPP=202.786;RPPR=63.8115;RPR=0;RUN=1;SAF=92;SAP=202.786;SAR=0;SRF=28;SRP=63.8115;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:49:13,36:13:453:36:1270:-99.853,0,-26.3523 0/1:36:11,25:11:383:25:769:-58.658,0,-23.9679 0/1:35:4,31:4:138:31:1070:-86.0733,0,-2.22435 dDocent_Contig_4269 36 . T C 146.544 . AB=0.166667;ABP=55.1256;AC=2;AF=0.333333;AN=6;AO=11;CIGAR=1X;DP=120;DPB=120;DPRA=0;EPP=26.8965;EPPR=239.701;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=3.46945e-18;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=448;QR=4351;RO=109;RPL=0;RPP=26.8965;RPPR=239.701;RPR=11;RUN=1;SAF=11;SAP=26.8965;SAR=0;SRF=109;SRP=239.701;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:66:64,2:64:2573:2:82:0,-12.0883,-223.917 0/1:10:9,1:9:363:1:40:-0.985379,0,-30.024 0/1:44:36,8:36:1415:8:326:-16.4645,0,-114.366 dDocent_Contig_4270 83 . T A 7223.87 . AB=0.829493;ABP=207.639;AC=4;AF=0.666667;AN=6;AO=260;CIGAR=1X;DP=303;DPB=303;DPRA=0;EPP=567.593;EPPR=96.3836;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=8982;QR=1485;RO=43;RPL=260;RPP=567.593;RPPR=96.3836;RPR=0;RUN=1;SAF=260;SAP=567.593;SAR=0;SRF=43;SRP=96.3836;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:155:28,127:28:989:127:4413:-350.697,0,-42.6651 0/1:62:9,53:9:301:53:1841:-147.309,0,-8.75144 1/1:86:6,80:6:195:80:2728:-227.904,-8.0199,0 dDocent_Contig_4271 44 . T G 245.421 . AB=0.3125;ABP=12.7819;AC=1;AF=0.166667;AN=6;AO=11;CIGAR=1X;DP=70;DPB=70;DPRA=1.16667;EPP=26.8965;EPPR=131.127;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=437;QR=2307;RO=59;RPL=0;RPP=26.8965;RPPR=131.127;RPR=11;RUN=1;SAF=11;SAP=26.8965;SAR=0;SRF=59;SRP=131.127;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:17:16,1:16:600:1:41:0,-1.02294,-50.2258 0/1:32:22,10:22:873:10:396:-26.3658,0,-69.252 0/0:21:21,0:21:834:0:0:0,-6.32163,-75.3732 dDocent_Contig_4272 98 . N G 96.8056 . AB=0;ABP=0;AC=4;AF=1;AN=4;AO=3;CIGAR=1X;DP=3;DPB=3;DPRA=0;EPP=9.52472;EPPR=0;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=0;NS=2;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=97;QR=0;RO=0;RPL=3;RPP=9.52472;RPPR=0;RPR=0;RUN=1;SAF=3;SAP=9.52472;SAR=0;SRF=0;SRP=0;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL ./.:.:.:.:.:.:.:. 1/1:1:0,1:0:0:1:33:-3.29913,-0.30103,0 1/1:2:0,2:0:0:2:64:-6.07866,-0.60206,0 dDocent_Contig_4273 8 . T G 526.074 . AB=0.314286;ABP=23.9805;AC=1;AF=0.166667;AN=6;AO=24;CIGAR=1X;DP=112;DPB=112;DPRA=0;EPP=55.1256;EPPR=194.1;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=910;QR=3332;RO=88;RPL=0;RPP=55.1256;RPPR=194.1;RPR=24;RUN=1;SAF=24;SAP=55.1256;SAR=0;SRF=88;SRP=194.1;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:70:48,22:48:1830:22:832:-54.1299,0,-143.876 0/0:15:14,1:14:531:1:39:0,-0.618885,-44.2365 0/0:27:26,1:26:971:1:39:0,-4.23125,-83.7997 dDocent_Contig_4274 14 . T A 8546.29 . AB=0.719764;ABP=145.219;AC=3;AF=0.5;AN=6;AO=244;CIGAR=1M1X5M;DP=339;DPB=331.143;DPRA=0;EPP=532.85;EPPR=79.0118;GTI=0;LEN=1;MEANALT=3;MQM=60;MQMR=60;NS=3;NUMALT=2;ODDS=0;PAIRED=0.995902;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=9767;QR=1395;RO=35;RPL=0;RPP=532.85;RPPR=79.0118;RPR=244;RUN=1;SAF=244;SAP=532.85;SAR=0;SRF=35;SRP=79.0118;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|1:174:21,26,124:21:836:26,124:1041,4965:-419.591,-340.158,-401.168,-16.9202,0,-48.4283 0|1:57:0,9,47:0:0:9,47:360,1889:-185.339,-155.685,-152.976,-29.6735,0,-15.5251 0|1:108:14,20,73:14:559:20,73:803,2913:-255.221,-193.85,-233.87,-19.5445,0,-43.61 dDocent_Contig_4275 15 . T C 1256.43 . AB=0.672131;ABP=18.709;AC=3;AF=0.5;AN=6;AO=41;CIGAR=1X;DP=61;DPB=61;DPRA=0;EPP=92.0407;EPPR=46.4397;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=1650;QR=803;RO=20;RPL=0;RPP=92.0407;RPPR=46.4397;RPR=41;RUN=1;SAF=41;SAP=92.0407;SAR=0;SRF=20;SRP=46.4397;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:32:5,27:5:204:27:1087:-88.4805,0,-9.11107 0/1:16:10,6:10:394:6:244:-17.5223,0,-30.9996 0/1:13:5,8:5:205:8:319:-25.1629,0,-14.9216 dDocent_Contig_4276 35 . A T 41.9524 . AB=0.148148;ABP=32.0437;AC=2;AF=0.333333;AN=6;AO=4;CIGAR=1X;DP=37;DPB=37;DPRA=1.35;EPP=11.6962;EPPR=74.6689;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=163;QR=1325;RO=33;RPL=0;RPP=11.6962;RPPR=74.6689;RPR=4;RUN=1;SAF=4;SAP=11.6962;SAR=0;SRF=33;SRP=74.6689;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:19:16,3:16:643:3:122:-5.65292,0,-52.4858 0/1:8:7,1:7:286:1:41:-1.68633,0,-23.7066 0/0:10:10,0:10:396:0:0:0,-3.0103,-35.9948 dDocent_Contig_4277 36 . G C 132.887 . AB=0.169492;ABP=58.9901;AC=2;AF=0.333333;AN=6;AO=10;CIGAR=1X;DP=74;DPB=74;DPRA=1.96667;EPP=24.725;EPPR=141.985;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=3.46945e-18;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=376;QR=2516;RO=64;RPL=0;RPP=24.725;RPPR=141.985;RPR=10;RUN=1;SAF=10;SAP=24.725;SAR=0;SRF=64;SRP=141.985;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:46:38,8:38:1483:8:307:-14.141,0,-119.887 0/1:13:11,2:11:433:2:69:-2.6385,0,-35.4095 0/0:15:15,0:15:600:0:0:0,-4.51545,-54.3388 dDocent_Contig_4278 37 . A G 5683.48 . AB=0.676364;ABP=77.3062;AC=3;AF=0.5;AN=6;AO=186;CIGAR=1X;DP=275;DPB=275;DPRA=0;EPP=406.904;EPPR=196.271;GTI=0;LEN=1;MEANALT=1;MQM=54.0968;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=0.0898876;PAO=0;PQA=0;PQR=0;PRO=0;QA=7359;QR=3535;RO=89;RPL=0;RPP=406.904;RPPR=196.271;RPR=186;RUN=1;SAF=186;SAP=406.904;SAR=0;SRF=89;SRP=196.271;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:150:73,77:73:2896:77:3028:-224.929,0,-215.594 0/1:45:7,38:7:278:38:1484:-119.876,0,-11.8429 0/1:80:9,71:9:361:71:2847:-229.067,0,-8.77037 dDocent_Contig_4279 155 . C A 718.818 . AB=0.288462;ABP=43.4331;AC=3;AF=0.5;AN=6;AO=30;CIGAR=1X;DP=104;DPB=104;DPRA=0;EPP=68.1545;EPPR=163.699;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=1196;QR=2929;RO=74;RPL=0;RPP=68.1545;RPPR=163.699;RPR=30;RUN=1;SAF=0;SAP=68.1545;SAR=30;SRF=0;SRP=163.699;SRR=74;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:56:47,9:47:1842:9:364:-16.2667,0,-149.136 0/1:9:2,7:2:81:7:273:-22.2257,0,-4.97646 0/1:39:25,14:25:1006:14:559:-38.9122,0,-79.0972 dDocent_Contig_4280 16 . A T 1571.04 . AB=0.133714;ABP=1022.69;AC=3;AF=0.5;AN=6;AO=117;CIGAR=1X;DP=875;DPB=875;DPRA=0;EPP=257.073;EPPR=1590.36;GTI=0;LEN=1;MEANALT=1.66667;MQM=55.8376;MQMR=47.026;NS=3;NUMALT=1;ODDS=0;PAIRED=0.00854701;PAIREDR=0.601915;PAO=0;PQA=0;PQR=0;PRO=0;QA=4662;QR=28878;RO=731;RPL=0;RPP=257.073;RPPR=1590.36;RPR=117;RUN=1;SAF=117;SAP=257.073;SAR=0;SRF=731;SRP=1590.36;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:537:448,71:448:17712:71:2834:-97.485,0,-1274.09 0/1:107:89,18:89:3508:18:706:-31.5138,0,-230.676 0/1:231:194,28:194:7658:28:1122:-33.6281,0,-562.207 dDocent_Contig_4282 10 . G A 670.794 . AB=0.152482;ABP=298.823;AC=1;AF=0.166667;AN=6;AO=48;CIGAR=1X;DP=452;DPB=452;DPRA=0;EPP=107.241;EPPR=880.285;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=56.7327;NS=3;NUMALT=1;ODDS=0;PAIRED=0.979167;PAIREDR=0.920792;PAO=0;PQA=0;PQR=0;PRO=0;QA=1905;QR=16055;RO=404;RPL=0;RPP=107.241;RPPR=880.285;RPR=48;RUN=1;SAF=48;SAP=107.241;SAR=0;SRF=404;SRP=880.285;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:282:239,43:239:9536:43:1703:-68.6023,0,-765.727 0/0:80:77,3:77:3003:3:121:0,-12.8022,-253.808 0/0:90:88,2:88:3516:2:81:0,-19.407,-302.828 dDocent_Contig_4284 10 . T G 13221.3 . AB=0.738754;ABP=289.194;AC=3;AF=0.5;AN=6;AO=427;CIGAR=1X;DP=578;DPB=578;DPRA=0;EPP=930.229;EPPR=330.903;GTI=0;LEN=1;MEANALT=1;MQM=57.0984;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=0.667447;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=16850;QR=5940;RO=151;RPL=0;RPP=930.229;RPPR=330.903;RPR=427;RUN=1;SAF=427;SAP=930.229;SAR=0;SRF=151;SRP=330.903;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:347:72,275:72:2788:275:10819:-859.924,0,-146.59 0/1:82:30,52:30:1192:52:2059:-160.56,0,-82.8689 0/1:149:49,100:49:1960:100:3972:-307.165,0,-131.742 dDocent_Contig_4285 13 . C T 1650.48 . AB=0.517857;ABP=3.32051;AC=3;AF=0.5;AN=6;AO=58;CIGAR=1X;DP=112;DPB=112;DPRA=0;EPP=128.956;EPPR=120.27;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=2259;QR=2161;RO=54;RPL=0;RPP=128.956;RPPR=120.27;RPR=58;RUN=1;SAF=58;SAP=128.956;SAR=0;SRF=54;SRP=120.27;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:57:34,23:34:1352:23:891:-63.346,0,-104.782 0/1:17:7,10:7:282:10:385:-29.8875,0,-20.6355 0/1:38:13,25:13:527:25:983:-77.3372,0,-36.338 dDocent_Contig_4286 14 . T C 277.993 . AB=0.155172;ABP=122.816;AC=2;AF=0.333333;AN=6;AO=22;CIGAR=1X;DP=183;DPB=183;DPRA=0;EPP=50.7827;EPPR=352.617;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=891;QR=6467;RO=161;RPL=0;RPP=50.7827;RPPR=352.617;RPR=22;RUN=1;SAF=22;SAP=50.7827;SAR=0;SRF=161;SRP=352.617;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:99:85,14:85:3399:14:569:-21.7488,0,-276.149 0/1:17:13,4:13:524:4:159:-9.57332,0,-42.3894 0/0:67:63,4:63:2544:4:163:0,-5.11058,-214.029 dDocent_Contig_4288 17 . G A 191.136 . AB=0.132812;ABP=152.91;AC=3;AF=0.5;AN=6;AO=17;CIGAR=1X;DP=128;DPB=128;DPRA=0;EPP=39.9253;EPPR=244.044;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=689;QR=4351;RO=111;RPL=0;RPP=39.9253;RPPR=244.044;RPR=17;RUN=1;SAF=17;SAP=39.9253;SAR=0;SRF=111;SRP=244.044;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:86:74,12:74:2880:12:485:-18.1118,0,-233.426 0/1:15:13,2:13:522:2:82:-3.26423,0,-42.811 0/1:27:24,3:24:949:3:122:-3.24468,0,-77.5855 dDocent_Contig_4289 98 . N G 349.563 . AB=0;ABP=0;AC=6;AF=1;AN=6;AO=11;CIGAR=1X;DP=11;DPB=11;DPRA=0;EPP=26.8965;EPPR=0;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=0;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=372;QR=0;RO=0;RPL=11;RPP=26.8965;RPPR=0;RPR=0;RUN=1;SAF=11;SAP=26.8965;SAR=0;SRF=0;SRP=0;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 1/1:6:0,6:0:0:6:207:-18.9682,-1.80618,0 1/1:3:0,3:0:0:3:96:-8.95771,-0.90309,0 1/1:2:0,2:0:0:2:69:-6.55266,-0.60206,0 dDocent_Contig_4290 27 . C T 101.055 . AB=0.263158;ABP=12.2676;AC=1;AF=0.166667;AN=6;AO=5;CIGAR=1X;DP=42;DPB=42;DPRA=1.65217;EPP=13.8677;EPPR=83.3548;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=56.027;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=192;QR=1484;RO=37;RPL=0;RPP=13.8677;RPPR=83.3548;RPR=5;RUN=1;SAF=5;SAP=13.8677;SAR=0;SRF=37;SRP=83.3548;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:13:13,0:13:526:0:0:0,-3.91339,-44.1905 0/0:10:10,0:10:389:0:0:0,-3.0103,-33.877 0/1:19:14,5:14:569:5:192:-11.9294,0,-45.8329 dDocent_Contig_4291 30 . A G 8057.22 . AB=0.832461;ABP=186.38;AC=4;AF=0.666667;AN=6;AO=245;CIGAR=1X;DP=281;DPB=281;DPRA=0;EPP=535.021;EPPR=81.1833;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=9795;QR=1402;RO=36;RPL=0;RPP=535.021;RPPR=81.1833;RPR=245;RUN=1;SAF=245;SAP=535.021;SAR=0;SRF=36;SRP=81.1833;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:153:24,129:24:933:129:5167:-418.821,0,-38.2094 0/1:38:8,30:8:307:30:1185:-95.4863,0,-16.5463 1/1:90:4,86:4:162:86:3443:-294.938,-12.1257,0 dDocent_Contig_4293 16 . T A 160.326 . AB=0.127119;ABP=145.518;AC=1;AF=0.166667;AN=6;AO=15;CIGAR=1X;DP=196;DPB=196;DPRA=3.02564;EPP=35.5824;EPPR=396.047;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=6.93889e-18;PAIRED=1;PAIREDR=0.961326;PAO=0;PQA=0;PQR=0;PRO=0;QA=586;QR=7244;RO=181;RPL=0;RPP=35.5824;RPPR=396.047;RPR=15;RUN=1;SAF=15;SAP=35.5824;SAR=0;SRF=181;SRP=396.047;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:118:103,15:103:4138:15:586:-17.5555,0,-336.856 0/0:20:20,0:20:794:0:0:0,-6.0206,-71.7776 0/0:58:58,0:58:2312:0:0:0,-17.4597,-208.239 dDocent_Contig_4294 7 . A G 30.9948 . AB=0.16129;ABP=33.9012;AC=1;AF=0.166667;AN=6;AO=6;CIGAR=1X;DP=94;DPB=94;DPRA=2.11111;EPP=16.0391;EPPR=194.1;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=59.1136;NS=3;NUMALT=1;ODDS=3.46945e-18;PAIRED=1;PAIREDR=0.977273;PAO=0;PQA=0;PQR=0;PRO=0;QA=182;QR=3171;RO=88;RPL=0;RPP=16.0391;RPPR=194.1;RPR=6;RUN=1;SAF=6;SAP=16.0391;SAR=0;SRF=88;SRP=194.1;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:45:44,1:44:1576:1:27:0,-10.8466,-139.425 0/0:18:18,0:18:668:0:0:0,-5.41854,-60.4515 0/1:31:26,5:26:927:5:155:-4.92304,0,-72.1975 dDocent_Contig_4295 23 . A T 1609.48 . AB=0.133333;ABP=20.5268;AC=0;AF=0;AN=6;AO=2;CIGAR=1X3M1D1M;DP=100;DPB=99.6667;DPRA=0;EPP=7.35324;EPPR=94.2121;GTI=0;LEN=1;MEANALT=3;MQM=36;MQMR=60;NS=3;NUMALT=3;ODDS=0;PAIRED=0;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=70;QR=1590;RO=42;RPL=0;RPP=7.35324;RPPR=94.2121;RPR=2;RUN=1;SAF=0;SAP=7.35324;SAR=2;SRF=42;SRP=94.2121;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|0:46:23,0,0,23:23:866:0,0,23:0,0,921:-69.3481,-76.2718,-147.219,-76.2718,-147.219,-147.219,0,-71.3352,-71.3352,-64.4115 0|0:15:2,2,3,8:2:77:2,3,8:70,115,324:-29.2635,-24.6359,-30.3538,-20.4284,-21.5215,-25.8468,-3.12129,-4.22639,0,-7.0423 0|0:39:17,0,0,22:17:647:0,0,22:0,0,881:-67.8587,-72.9762,-126.031,-72.9762,-126.031,-126.031,0,-53.4435,-53.4435,-46.8209 dDocent_Contig_4296 33 . C T 188.693 . AB=0.243243;ABP=24.1968;AC=2;AF=0.333333;AN=6;AO=9;CIGAR=1X;DP=54;DPB=54;DPRA=1.08824;EPP=22.5536;EPPR=100.727;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=364;QR=1829;RO=45;RPL=0;RPP=22.5536;RPPR=100.727;RPR=9;RUN=1;SAF=9;SAP=22.5536;SAR=0;SRF=45;SRP=100.727;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:23:20,3:20:813:3:122:-4.4488,0,-66.5609 0/1:14:8,6:8:325:6:242:-17.9429,0,-25.405 0/0:17:17,0:17:691:0:0:0,-5.11751,-62.5181 dDocent_Contig_4297 39 . C T 161.596 . AB=0.28;ABP=13.5202;AC=1;AF=0.166667;AN=6;AO=7;CIGAR=1X;DP=96;DPB=96;DPRA=0.704225;EPP=18.2106;EPPR=196.271;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=276;QR=3503;RO=89;RPL=0;RPP=18.2106;RPPR=196.271;RPR=7;RUN=1;SAF=7;SAP=18.2106;SAR=0;SRF=89;SRP=196.271;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:25:18,7:18:713:7:276:-17.6825,0,-56.9729 0/0:24:24,0:24:957:0:0:0,-7.22472,-86.4353 0/0:47:47,0:47:1833:0:0:0,-14.1484,-165.197 dDocent_Contig_4298 71 . A G 970.2 . AB=0.305344;ABP=46.1248;AC=2;AF=0.333333;AN=6;AO=42;CIGAR=1X;DP=162;DPB=162;DPRA=0;EPP=94.2121;EPPR=263.587;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=6.93889e-18;PAIRED=1;PAIREDR=0.991667;PAO=0;PQA=0;PQR=0;PRO=0;QA=1613;QR=4636;RO=120;RPL=42;RPP=94.2121;RPPR=263.587;RPR=0;RUN=1;SAF=42;SAP=94.2121;SAR=0;SRF=120;SRP=263.587;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:114:78,36:78:3029:36:1392:-91.2446,0,-238.397 0/1:17:13,4:13:497:4:156:-9.29832,0,-39.9561 0/0:31:29,2:29:1110:2:65:0,-3.16036,-94.03 dDocent_Contig_4299 131 . A T 6632.75 . AB=0.87395;ABP=292.09;AC=4;AF=0.666667;AN=6;AO=208;CIGAR=8M1X;DP=238;DPB=235.333;DPRA=0;EPP=454.677;EPPR=52.9542;GTI=0;LEN=1;MEANALT=2;MQM=60;MQMR=60;NS=3;NUMALT=2;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=8085;QR=845;RO=23;RPL=0;RPP=454.677;RPPR=52.9542;RPR=208;RUN=1;SAF=0;SAP=454.677;SAR=208;SRF=0;SRP=52.9542;SRR=23;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|1:132:15,0,116:15:549:0,116:0,4475:-363.224,-367.739,-412.604,0,-45.1072,-10.1877 1|1:30:1,4,25:1:37:4,25:159,976:-90.0154,-77.2245,-79.0466,-10.0912,0,-5.58701 0|1:76:7,2,67:7:259:2,67:81,2634:-214.538,-209.966,-230.551,0,-14.4752,-0.993093 dDocent_Contig_4300 31 . C A 57.6141 . AB=0.157895;ABP=41.6397;AC=2;AF=0.333333;AN=6;AO=6;CIGAR=1X;DP=48;DPB=48;DPRA=1.9;EPP=16.0391;EPPR=94.2121;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=3.46945e-18;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=222;QR=1679;RO=42;RPL=0;RPP=16.0391;RPPR=94.2121;RPR=6;RUN=1;SAF=6;SAP=16.0391;SAR=0;SRF=42;SRP=94.2121;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:23:19,4:19:762:4:140:-6.01224,0,-61.9788 0/0:10:10,0:10:398:0:0:0,-3.0103,-36.1788 0/1:15:13,2:13:519:2:82:-3.26423,0,-42.5424 dDocent_Contig_4302 38 . C T 280.568 . AB=0.0769231;ABP=63.6445;AC=0;AF=0;AN=6;AO=3;CIGAR=1X3M2X;DP=68;DPB=68;DPRA=0;EPP=9.52472;EPPR=94.2121;GTI=0;LEN=1;MEANALT=3.5;MQM=60;MQMR=60;NS=3;NUMALT=4;ODDS=0;PAIRED=0;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=119;QR=1617;RO=42;RPL=0;RPP=9.52472;RPPR=94.2121;RPR=3;RUN=1;SAF=3;SAP=9.52472;SAR=0;SRF=42;SRP=94.2121;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|0:29:15,4,1,0,9:15:580:4,1,0,9:162,38,0,356:-24.8384,-20.2991,-66.7301,-26.236,-64.8181,-73.5878,-29.3538,-67.9342,-73.8888,-77.0055,0,-38.6353,-44.5836,-47.7008,-44.9915 0|0:18:13,1,1,1,2:13:499:1,1,1,2:40,40,39,82:-2.87038,-4.20186,-44.8458,-3.48531,-41.851,-44.144,-3.57699,-41.9408,-41.2388,-44.2338,0,-38.3758,-37.6734,-37.7633,-40.3677 0|0:21:14,0,2,2,3:14:538:0,2,2,3:0,80,80,122:-5.85165,-10.0661,-54.2191,-3.47704,-47.6279,-47.0259,-3.47704,-47.6279,-41.0365,-47.0259,0,-44.1532,-37.5615,-37.5615,-43.2501 dDocent_Contig_4303 24 . G A 592.793 . AB=0.254902;ABP=56.2327;AC=3;AF=0.5;AN=6;AO=26;CIGAR=1X;DP=102;DPB=102;DPRA=0;EPP=59.4686;EPPR=168.042;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=0.565789;PAO=0;PQA=0;PQR=0;PRO=0;QA=1049;QR=3021;RO=76;RPL=0;RPP=59.4686;RPPR=168.042;RPR=26;RUN=1;SAF=26;SAP=59.4686;SAR=0;SRF=76;SRP=168.042;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:53:45,8:45:1794:8:325:-13.6648,0,-145.72 0/1:23:15,8:15:610:8:324:-22.6051,0,-48.3137 0/1:26:16,10:16:617:10:400:-28.5322,0,-48.0212 dDocent_Contig_4304 57 . C T 2734.99 . AB=0.414847;ABP=17.433;AC=3;AF=0.5;AN=6;AO=95;CIGAR=5M1X10M;DP=229;DPB=221.812;DPRA=0;EPP=209.3;EPPR=270.101;GTI=0;LEN=1;MEANALT=3;MQM=60;MQMR=60;NS=3;NUMALT=2;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=3833;QR=4860;RO=123;RPL=95;RPP=209.3;RPPR=270.101;RPR=0;RUN=1;SAF=95;SAP=209.3;SAR=0;SRF=123;SRP=270.101;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|1:137:72,1,61:72:2829:1,61:33,2451:-180.307,-199.319,-431.699,0,-230.031,-214.33 0|1:39:14,4,21:14:558:4,21:139,854:-66.2785,-59.2445,-103.99,0,-34.7468,-39.6715 0|1:53:37,3,13:37:1473:3,13:112,528:-32.4368,-34.4612,-154.846,0,-112.2,-117.405 dDocent_Contig_4305 13 . G A 34.9402 . AB=0.115385;ABP=69.8248;AC=1;AF=0.166667;AN=6;AO=7;CIGAR=1X;DP=199;DPB=199;DPRA=0.289683;EPP=18.2106;EPPR=419.933;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=3.46945e-18;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=270;QR=7562;RO=192;RPL=0;RPP=18.2106;RPPR=419.933;RPR=7;RUN=1;SAF=7;SAP=18.2106;SAR=0;SRF=192;SRP=419.933;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:126:126,0:126:4960:0:0:0,-37.9298,-446.32 0/0:21:20,1:20:788:1:41:0,-2.22706,-67.145 0/1:52:46,6:46:1814:6:229:-5.31778,0,-147.83 dDocent_Contig_4306 68 . G A 109.821 . AB=0.175;ABP=39.7082;AC=1;AF=0.166667;AN=6;AO=9;CIGAR=1X;DP=205;DPB=205;DPRA=0;EPP=22.5536;EPPR=428.619;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=348;QR=7234;RO=196;RPL=9;RPP=22.5536;RPPR=428.619;RPR=0;RUN=1;SAF=9;SAP=22.5536;SAR=0;SRF=196;SRP=428.619;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:124:123,1:123:4600:1:39:0,-33.4312,-410.166 0/1:40:33,7:33:1206:7:272:-12.806,0,-96.7879 0/0:41:40,1:40:1428:1:37:0,-8.6444,-125.111 dDocent_Contig_4307 58 . A G 2960.42 . AB=0.316583;ABP=61.1599;AC=2;AF=0.333333;AN=6;AO=63;CIGAR=1M2I3M1X;DP=199;DPB=256.6;DPRA=0;EPP=139.813;EPPR=122.441;GTI=0;LEN=1;MEANALT=2.33333;MQM=60;MQMR=60;NS=3;NUMALT=2;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=2459;QR=2150;RO=55;RPL=63;RPP=139.813;RPPR=122.441;RPR=0;RUN=1;SAF=63;SAP=139.813;SAR=0;SRF=55;SRP=122.441;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|0:110:29,25,55:29:1141:25,55:981,2117:-165.052,-93.1052,-179.441,0,-13.185,-77.3029 0|1:55:21,21,13:21:813:21,13:815,500:-60.6341,0,-60.4587,-25.9158,-25.74,-88.7806 1|0:34:5,17,12:5:196:17,12:663,474:-75.8786,-22.8898,-33.8889,-38.3773,0,-50.883 dDocent_Contig_4308 82 . G C 4856.09 . AB=0.75;ABP=20.3821;AC=5;AF=0.833333;AN=6;AO=163;CIGAR=1X;DP=179;DPB=179;DPRA=0;EPP=356.96;EPPR=37.7539;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=5779;QR=550;RO=16;RPL=163;RPP=356.96;RPPR=37.7539;RPR=0;RUN=1;SAF=163;SAP=356.96;SAR=0;SRF=16;SRP=37.7539;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 1/1:82:8,74:8:265:74:2667:-216.093,-0.516348,0 0/1:32:8,24:8:285:24:862:-68.2679,0,-16.3611 1/1:65:0,65:0:0:65:2250:-202.771,-19.567,0 dDocent_Contig_4309 12 . G A 263.907 . AB=0.131429;ABP=209.499;AC=1;AF=0.166667;AN=6;AO=23;CIGAR=1X;DP=285;DPB=285;DPRA=3.18182;EPP=52.9542;EPPR=571.936;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=892;QR=10060;RO=262;RPL=0;RPP=52.9542;RPPR=571.936;RPR=23;RUN=1;SAF=23;SAP=52.9542;SAR=0;SRF=262;SRP=571.936;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:175:152,23:152:5834:23:892:-27.9136,0,-472.307 0/0:47:47,0:47:1793:0:0:0,-14.1484,-161.616 0/0:63:63,0:63:2433:0:0:0,-18.9649,-219.165 dDocent_Contig_4310 122 . T C 47.5718 . AB=0.126761;ABP=88.9211;AC=2;AF=0.333333;AN=6;AO=10;CIGAR=1X;DP=87;DPB=87;DPRA=0;EPP=24.725;EPPR=168.042;GTI=0;LEN=1;MEANALT=1.33333;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=331;QR=2502;RO=76;RPL=0;RPP=24.725;RPPR=168.042;RPR=10;RUN=1;SAF=0;SAP=24.725;SAR=10;SRF=0;SRP=168.042;SRR=76;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:49:41,7:41:1328:7:228:-6.27848,0,-105.268 0/0:16:15,1:15:503:1:33:0,-1.51734,-42.2907 0/1:22:20,2:20:671:2:70:-0.0247359,0,-54.0817 dDocent_Contig_4311 9 . A T 6686.88 . AB=0.0625;ABP=109.412;AC=0;AF=0;AN=6;AO=4;CIGAR=1X3M2X;DP=279;DPB=279;DPRA=0;EPP=11.6962;EPPR=26.8965;GTI=0;LEN=1;MEANALT=6;MQM=50.75;MQMR=60;NS=3;NUMALT=4;ODDS=0;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=154;QR=418;RO=11;RPL=0;RPP=11.6962;RPPR=26.8965;RPR=4;RUN=1;SAF=4;SAP=11.6962;SAR=0;SRF=11;SRP=26.8965;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|0:147:6,32,0,89,3:6:225:32,0,89,3:1240,0,3553,121:-363.593,-270.477,-279.272,-365.399,-288.905,-383.828,-76.4911,0,-94.9208,-68.1291,-355.425,-278.931,-373.853,-84.9449,-372.95 0|0:68:5,30,0,19,12:5:193:30,0,19,12:1160,0,746,472:-138.04,-45.348,-52.1668,-139.545,-61.1977,-155.396,-78.3466,0,-94.1971,-88.4775,-100.72,-22.3726,-116.57,-55.3706,-112.958 0|0:64:0,13,4,40,4:0:0:13,4,40,4:514,154,1599,163:-172.578,-130.541,-126.628,-160.094,-118.058,-158.89,-42.0378,0,-29.5557,-29.9966,-159.149,-117.112,-146.665,-28.6066,-157.945 dDocent_Contig_4312 12 . C A 845.042 . AB=0.176955;ABP=223.276;AC=3;AF=0.5;AN=6;AO=43;CIGAR=2M2X;DP=243;DPB=258.75;DPRA=0;EPP=96.3836;EPPR=339.589;GTI=0;LEN=1;MEANALT=3;MQM=60;MQMR=60;NS=3;NUMALT=3;ODDS=0;PAIRED=0.906977;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=1664;QR=6063;RO=155;RPL=0;RPP=96.3836;RPPR=339.589;RPR=43;RUN=1;SAF=43;SAP=96.3836;SAR=0;SRF=155;SRP=339.589;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|1:152:97,1,25,22:97:3814:1,25,22:40,978,887:-51.2057,-77.1105,-390.52,0,-310.412,-306.181,-7.29075,-317.709,-240.594,-314.382 0|1:44:29,6,7,2:29:1119:6,7,2:239,257,72:-12.2655,-1.30102,-91.3908,0,-72.1947,-89.7711,-15.1248,-87.3247,-86.0064,-106.406 0|1:47:29,0,11,7:29:1130:0,11,7:0,429,254:-26.5487,-35.2786,-128.157,0,-92.8933,-89.5819,-14.5589,-107.43,-72.1683,-105.323 dDocent_Contig_4314 10 . G A 274.581 . AB=0.244898;ABP=30.7077;AC=1;AF=0.166667;AN=6;AO=12;CIGAR=1X;DP=83;DPB=83;DPRA=2.88235;EPP=29.068;EPPR=157.185;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=482;QR=2803;RO=71;RPL=0;RPP=29.068;RPPR=157.185;RPR=12;RUN=1;SAF=12;SAP=29.068;SAR=0;SRF=71;SRP=157.185;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:49:37,12:37:1446:12:482:-28.981,0,-115.633 0/0:17:17,0:17:670:0:0:0,-5.11751,-60.628 0/0:17:17,0:17:687:0:0:0,-5.11751,-62.1574 dDocent_Contig_4315 14 . C A 8839.07 . AB=0.862928;ABP=370.26;AC=3;AF=0.5;AN=6;AO=277;CIGAR=1X;DP=321;DPB=321;DPRA=0;EPP=604.508;EPPR=98.5551;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=10955;QR=1770;RO=44;RPL=0;RPP=604.508;RPPR=98.5551;RPR=277;RUN=1;SAF=277;SAP=604.508;SAR=0;SRF=44;SRP=98.5551;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:199:29,170:29:1161:170:6721:-544.719,0,-44.8612 0/1:37:5,32:5:203:32:1264:-102.896,0,-7.51494 0/1:85:10,75:10:406:75:2970:-241.815,0,-11.3131 dDocent_Contig_4316 12 . A G 34.5939 . AB=0.157895;ABP=22.325;AC=1;AF=0.166667;AN=6;AO=3;CIGAR=1X;DP=131;DPB=131;DPRA=0.339286;EPP=9.52472;EPPR=280.959;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=118;QR=4952;RO=128;RPL=0;RPP=9.52472;RPPR=280.959;RPR=3;RUN=1;SAF=3;SAP=9.52472;SAR=0;SRF=128;SRP=280.959;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:90:90,0:90:3502:0:0:0,-27.0927,-315.28 0/1:19:16,3:16:597:3:118:-5.28315,0,-48.3415 0/0:22:22,0:22:853:0:0:0,-6.62266,-77.0855 dDocent_Contig_4317 10 . A G 813.319 . AB=0.299065;ABP=40.5342;AC=3;AF=0.5;AN=6;AO=32;CIGAR=1X2M1X8M;DP=107;DPB=118.083;DPRA=0;EPP=72.4974;EPPR=120.27;GTI=0;LEN=1;MEANALT=2.66667;MQM=60;MQMR=60;NS=3;NUMALT=2;ODDS=0;PAIRED=1;PAIREDR=0.925926;PAO=0;PQA=0;PQR=0;PRO=0;QA=1254;QR=2097;RO=54;RPL=0;RPP=72.4974;RPPR=120.27;RPR=32;RUN=1;SAF=32;SAP=72.4974;SAR=0;SRF=54;SRP=120.27;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|1:55:30,16,8:30:1173:16,8:624,314:-42.259,0,-91.6196,-25.4652,-70.6117,-119.495 0|1:15:5,6,3:5:202:6,3:234,120:-17.7237,0,-14.8494,-9.34124,-6.77167,-25.0967 0|1:37:19,10,8:19:722:10,8:396,320:-26.8721,0,-56.176,-6.22943,-32.8199,-63.011 dDocent_Contig_4318 9 . A C 614.675 . AB=0.19685;ABP=104.386;AC=3;AF=0.500001;AN=6;AO=25;CIGAR=1X3M;DP=127;DPB=127;DPRA=0;EPP=57.2971;EPPR=165.871;GTI=0;LEN=1;MEANALT=2.66667;MQM=58.36;MQMR=59.6267;NS=3;NUMALT=4;ODDS=2.77556e-17;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=962;QR=2875;RO=75;RPL=0;RPP=57.2971;RPPR=165.871;RPR=25;RUN=1;SAF=25;SAP=57.2971;SAR=0;SRF=75;SRP=165.871;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|1:43:18,0,10,15,0:18:698:0,10,15,0:0,381,577,0:-41.8932,-47.3118,-104.661,-16.0635,-73.4127,-70.4024,0,-57.3516,-26.1044,-52.8361,-47.3118,-104.661,-73.4127,-57.3516,-104.661 0|1:36:23,5,0,5,3:23:876:5,0,5,3:198,0,191,116:-8.96959,0,-70.3719,-15.8933,-71.877,-87.7577,-0.254756,-56.248,-72.1292,-70.624,-8.86906,-64.8406,-80.7201,-65.0928,-79.817 0|1:48:34,0,8,5,0:34:1301:0,8,5,0:0,319,194,0:-16.0537,-26.2887,-132.724,0,-106.45,-104.041,-10.3474,-116.784,-90.5085,-115.279,-26.2887,-132.724,-106.45,-116.784,-132.724 dDocent_Contig_4319 27 . C T 11857.8 . AB=0.249608;ABP=1045.86;AC=3;AF=0.5;AN=6;AO=478;CIGAR=1X1M1X4M;DP=1915;DPB=1916;DPRA=0;EPP=1040.97;EPPR=2428.54;GTI=0;LEN=1;MEANALT=16;MQM=52.6653;MQMR=55.2551;NS=3;NUMALT=2;ODDS=0;PAIRED=0.995816;PAIREDR=0.929275;PAO=0;PQA=0;PQR=0;PRO=0;QA=18851;QR=43263;RO=1117;RPL=0;RPP=1040.97;RPPR=2428.54;RPR=478;RUN=1;SAF=478;SAP=1040.97;SAR=0;SRF=1117;SRP=2428.54;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|1:1113:654,82,258:654:25352:82,258:3242,10177:-627.216,-559.19,-2491.05,0,-1691.65,-1878.88 0|1:222:126,15,62:126:4870:15,62:590,2407:-157.112,-150.754,-506.615,0,-316.106,-341.732 0|1:580:337,38,158:337:13041:38,158:1478,6267:-406.975,-387.426,-1367.52,0,-870.54,-943.976 dDocent_Contig_4322 27 . C T 23426.2 . AB=0.0718563;ABP=1864.27;AC=0;AF=0;AN=6;AO=84;CIGAR=1X1M1X;DP=1169;DPB=1169;DPRA=0;EPP=185.414;EPPR=217.986;GTI=0;LEN=1;MEANALT=8.33333;MQM=43.131;MQMR=45.9192;NS=3;NUMALT=3;ODDS=2.22045e-16;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=3295;QR=3932;RO=99;RPL=0;RPP=185.414;RPPR=217.986;RPR=84;RUN=1;SAF=84;SAP=185.414;SAR=0;SRF=99;SRP=217.986;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|0:657:48,50,53,484:48:1910:50,53,484:1978,2085,19171:-1377.2,-1238.53,-1352.78,-1234.57,-1210.75,-1347.92,-27.7889,-3.95947,0,-11.3883 0|0:168:20,18,9,105:20:785:18,9,105:694,357,4109:-269.768,-225.469,-277.907,-248.774,-256.31,-303.921,0,-7.53916,-30.8399,-26.2475 0|0:344:31,16,20,253:31:1237:16,20,253:623,789,9917:-701.169,-665.278,-751.428,-651.464,-697.208,-736.41,0,-45.7467,-31.93,-14.8081 dDocent_Contig_4323 19 . G A 42.8517 . AB=0.111111;ABP=26.6552;AC=1;AF=0.166667;AN=6;AO=2;CIGAR=4M1X6M1X2M1X;DP=81;DPB=79.2;DPRA=0.514286;EPP=7.35324;EPPR=135.47;GTI=0;LEN=1;MEANALT=2;MQM=47;MQMR=60;NS=3;NUMALT=4;ODDS=0;PAIRED=0;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=74;QR=2396;RO=61;RPL=0;RPP=7.35324;RPPR=135.47;RPR=2;RUN=1;SAF=2;SAP=7.35324;SAR=0;SRF=61;SRP=135.47;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|0:28:16,3,3,0,5:16:629:3,3,0,5:116,121,0,199:-5.67357,-0.947447,-51.826,-0.49527,-42.7502,-51.3773,-10.49,-52.7291,-52.2804,-62.2585,0,-42.2118,-41.7626,-51.7383,-50.2332 0|1:18:14,0,0,2,2:14:549:0,0,2,2:0,0,74,80:-1.81095,-6.02537,-51.2331,-6.02537,-51.2331,-51.2331,0,-45.2577,-45.2577,-44.6557,-1.85535,-47.0276,-47.0276,-41.0544,-46.4256 0|0:35:31,0,0,0,3:31:1218:0,0,0,3:0,0,0,120:0,-9.33193,-109.6,-9.33193,-109.6,-109.6,-9.33193,-109.6,-109.6,-109.6,-3.08139,-103.282,-103.282,-103.282,-102.379 dDocent_Contig_4325 22 . A T 8618.49 . AB=0.187205;ABP=1982.28;AC=3;AF=0.5;AN=6;AO=436;CIGAR=1X;DP=2329;DPB=2329;DPRA=0;EPP=949.772;EPPR=4098.41;GTI=0;LEN=1;MEANALT=2;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=0.958716;PAIREDR=0.899788;PAO=0;PQA=0;PQR=0;PRO=0;QA=17419;QR=75064;RO=1886;RPL=0;RPP=949.772;RPPR=4098.41;RPR=436;RUN=1;SAF=436;SAP=949.772;SAR=0;SRF=1886;SRP=4098.41;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:1239:999,237:999:39741:237:9474:-479.676,0,-3200.58 0/1:421:341,80:341:13537:80:3217:-162.86,0,-1090.63 0/1:669:546,119:546:21786:119:4728:-224.837,0,-1758.29 dDocent_Contig_4326 17 . G A 404.607 . AB=0.141876;ABP=489.823;AC=2;AF=0.333333;AN=6;AO=76;CIGAR=1X;DP=638;DPB=638;DPRA=0;EPP=168.042;EPPR=1162.58;GTI=0;LEN=1;MEANALT=2.33333;MQM=34.3158;MQMR=52.7022;NS=3;NUMALT=1;ODDS=5.55112e-17;PAIRED=0.631579;PAIREDR=0.975655;PAO=0;PQA=0;PQR=0;PRO=0;QA=3041;QR=21223;RO=534;RPL=0;RPP=168.042;RPPR=1162.58;RPR=76;RUN=1;SAF=76;SAP=168.042;SAR=0;SRF=534;SRP=1162.58;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:355:289,49:289:11462:49:1966:-41.927,0,-908.573 0/1:82:67,13:67:2641:13:517:-1.62053,0,-200.072 0/0:201:178,14:178:7120:14:558:0,-25.2134,-583.935 dDocent_Contig_4327 10 . T G 10701.8 . AB=0;ABP=0;AC=6;AF=1;AN=6;AO=362;CIGAR=1X3M1X2M1X;DP=450;DPB=450;DPRA=0;EPP=789.083;EPPR=44.2683;GTI=0;LEN=1;MEANALT=8.33333;MQM=39.011;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=0.997238;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=13958;QR=743;RO=19;RPL=0;RPP=789.083;RPPR=44.2683;RPR=362;RUN=1;SAF=362;SAP=789.083;SAR=0;SRF=19;SRP=44.2683;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 1|1:206:9,155:9:354:155:6002:-449.348,-17.5316,0 1|1:109:1,95:1:40:95:3640:-294.918,-25.2902,0 1|1:135:9,112:9:349:112:4316:-325.315,-5.00322,0 dDocent_Contig_4328 93 . A G 20169.1 . AB=0.0672359;ABP=1527.26;AC=0;AF=0;AN=6;AO=63;CIGAR=4M1X4M3X;DP=937;DPB=5996.42;DPRA=0;EPP=24.5527;EPPR=0;GTI=0;LEN=1;MEANALT=10.6667;MQM=46.1429;MQMR=0;NS=3;NUMALT=3;ODDS=0;PAIRED=0.793651;PAIREDR=0;PAO=388.5;PQA=13310;PQR=138989;PRO=4056.17;QA=2108;QR=0;RO=0;RPL=63;RPP=139.813;RPPR=0;RPR=0;RUN=1;SAF=19;SAP=24.5527;SAR=44;SRF=0;SRP=0;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|0:489:0,42,290,134:0:0:42,290,134:1421,10010,4556:-1053.86,-942.248,-929.605,-282.469,-171.287,-195.17,-767.72,-656.181,0,-727.382 0|0:160:0,10,102,25:0:0:10,102,25:347,3480,867:-315.499,-287.878,-284.867,-49.5005,-22.1388,-18.7955,-264.98,-237.374,0,-257.454 0|0:288:0,11,204,46:0:0:11,204,46:340,6969,1602:-653.074,-626.623,-623.312,-120.937,-94.7469,-59.5264,-529.995,-503.554,0,-516.148 dDocent_Contig_4330 103 . C A 3576.47 . AB=0.174645;ABP=1040.15;AC=3;AF=0.5;AN=6;AO=197;CIGAR=1X;DP=1128;DPB=1128;DPRA=0;EPP=405.13;EPPR=1977.11;GTI=0;LEN=1;MEANALT=1.66667;MQM=59.2995;MQMR=59.6459;NS=3;NUMALT=1;ODDS=0;PAIRED=0.807107;PAIREDR=0.817008;PAO=0;PQA=0;PQR=0;PRO=0;QA=7810;QR=36589;RO=929;RPL=197;RPP=430.79;RPPR=1977.11;RPR=0;RUN=1;SAF=3;SAP=405.13;SAR=194;SRF=0;SRP=2020.31;SRR=929;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:460:377,82:377:14960:82:3247:-153.436,0,-1205.68 0/1:287:238,48:238:9344:48:1903:-85.1509,0,-753.55 0/1:381:314,67:314:12285:67:2660:-124.583,0,-988.428 dDocent_Contig_4336 19 . T C 66049 . AB=0;ABP=0;AC=6;AF=1;AN=6;AO=2579;CIGAR=1X;DP=2654;DPB=2654;DPRA=0;EPP=5603.24;EPPR=144.156;GTI=0;LEN=1;MEANALT=2.66667;MQM=32.7224;MQMR=46.7077;NS=3;NUMALT=1;ODDS=0;PAIRED=0.0922838;PAIREDR=0.0615385;PAO=0;PQA=0;PQR=0;PRO=0;QA=103286;QR=2575;RO=65;RPL=0;RPP=5603.24;RPPR=144.156;RPR=2579;RUN=1;SAF=2579;SAP=5603.24;SAR=0;SRF=65;SRP=144.156;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 1/1:1286:31,1252:31:1224:1252:50210:-3182.98,-286.428,0 1/1:520:15,502:15:596:502:20042:-1324.28,-109.004,0 1/1:848:19,825:19:755:825:33034:-2097.03,-193.678,0 dDocent_Contig_4337 16 . T A 69164.4 . AB=0.894068;ABP=3186.24;AC=4;AF=0.666667;AN=6;AO=2663;CIGAR=1X;DP=2960;DPB=2960;DPRA=0;EPP=5785.64;EPPR=643.595;GTI=0;LEN=1;MEANALT=1.33333;MQM=41.7582;MQMR=59.4814;NS=3;NUMALT=1;ODDS=0;PAIRED=0.946301;PAIREDR=0.945763;PAO=0;PQA=0;PQR=0;PRO=0;QA=105948;QR=11820;RO=295;RPL=0;RPP=5785.64;RPPR=643.595;RPR=2663;RUN=1;SAF=2663;SAP=5785.64;SAR=0;SRF=295;SRP=643.595;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:1368:153,1213:153:6149:1213:48334:-3116.29,0,-132.962 1/1:600:47,553:47:1866:553:21960:-1477.65,-12.4721,0 0/1:992:95,897:95:3805:897:35654:-2326.02,0,-43.8249 dDocent_Contig_4339 17 . T A 239.094 . 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T A 3836.63 . 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AB=0.285714;ABP=42.0968;AC=2;AF=0.333333;AN=6;AO=32;CIGAR=1X2M1X;DP=139;DPB=139;DPRA=0;EPP=72.4974;EPPR=233.186;GTI=0;LEN=1;MEANALT=1.33333;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=6.93889e-18;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=1022;QR=3402;RO=106;RPL=0;RPP=72.4974;RPPR=233.186;RPR=32;RUN=1;SAF=0;SAP=72.4974;SAR=32;SRF=0;SRP=233.186;SRR=106;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|1:62:52,10:52:1671:10:292:-7.90082,0,-132 0|1:36:17,18:17:543:18:598:-43.3163,0,-38.3583 0|0:41:37,4:37:1188:4:132:0,-0.136026,-95.0028 dDocent_Contig_4356 92 . C T 7537.89 . AB=0.0708215;ABP=567.772;AC=5;AF=0.833333;AN=6;AO=25;CIGAR=1X5M1X;DP=353;DPB=773.857;DPRA=0;EPP=57.2971;EPPR=0;GTI=0;LEN=1;MEANALT=6.66667;MQM=60;MQMR=0;NS=3;NUMALT=7;ODDS=0;PAIRED=1;PAIREDR=0;PAO=168.25;PQA=5823.5;PQR=63.25;PRO=2;QA=836;QR=0;RO=0;RPL=25;RPP=57.2971;RPPR=0;RPR=0;RUN=1;SAF=25;SAP=57.2971;SAR=0;SRF=0;SRP=0;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 1|1:210:0,143,0,9,18,16,11,13:0:0:143,0,9,18,16,11,13:4922,0,314,598,552,384,435:-448.134,-48.3828,-5.33555,-448.134,-48.3828,-448.134,-422.647,-22.8964,-422.647,-419.938,-399.75,0,-399.75,-374.264,-394.332,-403.474,-3.72311,-403.474,-377.987,-355.09,-398.657,-418.68,-18.9296,-418.68,-393.194,-370.297,-374.02,-415.369,-412.913,-13.1627,-412.913,-387.427,-364.53,-368.253,-383.46,-409 1|1:58:0,41,5,0,6,4,1,1:0:0:41,5,0,6,4,1,1:1403,178,0,204,141,36,29:-130.407,-16.5441,-4.20191,-115.9,-2.03835,-114.395,-130.407,-16.5441,-115.9,-130.407,-113.861,0,-99.3546,-113.861,-112.055,-119.014,-5.15192,-104.507,-119.014,-102.468,-117.81,-127.48,-13.6177,-112.974,-127.48,-110.935,-116.087,-127.179,-128.099,-14.2365,-113.592,-128.099,-111.553,-116.706,-125.172,-127.798 1|0:85:0,53,1,5,1,11,6,7:0:0:53,1,5,1,11,6,7:1839,35,174,34,386,197,244:-180.768,-31.2819,-15.3273,-177.921,-28.4343,-177.619,-166.63,-17.144,-163.782,-165.125,-178.01,-28.5241,-175.163,-163.872,-177.709,-149.486,0,-146.638,-135.348,-146.728,-146.174,-164.894,-15.4084,-162.047,-150.756,-162.136,-133.612,-163.088,-160.924,-11.4384,-158.077,-146.786,-158.167,-129.642,-145.051,-158.817 dDocent_Contig_4360 10 . G T 39.3494 . AB=0.153846;ABP=30.0702;AC=2;AF=0.333333;AN=6;AO=5;CIGAR=1X;DP=54;DPB=54;DPRA=0;EPP=13.8677;EPPR=109.412;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=0;PAIREDR=0.714286;PAO=0;PQA=0;PQR=0;PRO=0;QA=199;QR=1964;RO=49;RPL=0;RPP=13.8677;RPPR=109.412;RPR=5;RUN=1;SAF=5;SAP=13.8677;SAR=0;SRF=49;SRP=109.412;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:28:27,1:27:1082:1:38:0,-4.63157,-93.8713 0/1:12:10,2:10:400:2:81:-4.07337,0,-32.747 0/1:14:12,2:12:482:2:80:-3.37716,0,-39.5162 dDocent_Contig_4361 1 . N G 76.777 . AB=0;ABP=0;AC=2;AF=1;AN=2;AO=2;CIGAR=1X;DP=2;DPB=2;DPRA=0;EPP=7.35324;EPPR=0;GTI=0;LEN=1;MEANALT=1;MQM=57;MQMR=0;NS=1;NUMALT=1;ODDS=5.99146;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=81;QR=0;RO=0;RPL=0;RPP=7.35324;RPPR=0;RPR=2;RUN=1;SAF=2;SAP=7.35324;SAR=0;SRF=0;SRP=0;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 1/1:2:0,2:0:0:2:81:-7.67662,-0.60206,0 ./.:.:.:.:.:.:.:. ./.:.:.:.:.:.:.:. dDocent_Contig_4362 10 . G C 1372.87 . AB=0.0512821;ABP=139.423;AC=0;AF=0;AN=6;AO=4;CIGAR=2X3M1X;DP=149;DPB=149;DPRA=0;EPP=11.6962;EPPR=207.129;GTI=0;LEN=1;MEANALT=2;MQM=60;MQMR=60;NS=3;NUMALT=2;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=159;QR=3670;RO=94;RPL=0;RPP=11.6962;RPPR=207.129;RPR=4;RUN=1;SAF=4;SAP=11.6962;SAR=0;SRF=94;SRP=207.129;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|0:78:46,4,28:46:1791:4,28:159,1121:-78.5017,-79.2587,-225.229,0,-134.082,-138.745 0|0:24:22,0,2:22:853:0,2:0,81:-0.461014,-7.08367,-77.1439,0,-70.4633,-69.8612 0|0:47:26,0,21:26:1026:0,21:0,846:-62.3044,-70.1312,-154.546,0,-84.8137,-78.4921 dDocent_Contig_4363 7 . G A 7325.49 . AB=0.806122;ABP=82.7787;AC=5;AF=0.833333;AN=6;AO=233;CIGAR=1X;DP=269;DPB=269;DPRA=0;EPP=508.963;EPPR=76.8404;GTI=0;LEN=1;MEANALT=1.66667;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=1.38778e-17;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=8924;QR=1052;RO=34;RPL=0;RPP=508.963;RPPR=76.8404;RPR=233;RUN=1;SAF=233;SAP=508.963;SAR=0;SRF=34;SRP=76.8404;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 1/1:124:11,113:11:322:113:4356:-362.842,-8.06576,0 1/1:47:5,41:5:120:41:1567:-130.282,-2.94423,0 0/1:98:18,79:18:610:79:3001:-240.948,0,-25.8922 dDocent_Contig_4364 26 . C G 2577.57 . AB=0.0718563;ABP=268.905;AC=1;AF=0.166667;AN=6;AO=12;CIGAR=1X2M;DP=185;DPB=185;DPRA=0;EPP=29.068;EPPR=146.327;GTI=0;LEN=1;MEANALT=3;MQM=60;MQMR=60;NS=3;NUMALT=3;ODDS=2.77556e-17;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=482;QR=2585;RO=66;RPL=0;RPP=29.068;RPPR=146.327;RPR=12;RUN=1;SAF=12;SAP=29.068;SAR=0;SRF=66;SRP=146.327;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|0:143:56,20,3,64:56:2182:20,3,64:778,121,2520:-190.416,-143.34,-316.63,-197.299,-312.676,-375.707,0,-115.377,-169.337,-160.045 0|0:18:7,3,0,8:7:282:3,0,8:119,0,319:-24.1643,-16.476,-38.8178,-26.2715,-39.7209,-49.5163,0,-13.4531,-23.2473,-20.839 1|0:24:3,3,9,9:3:121:3,9,9:119,361,362:-48.6992,-39.807,-48.8782,-19.8597,-20.0394,-27.125,-19.7684,-19.9481,0,-27.0339 dDocent_Contig_4365 49 . T C 3490.45 . AB=0.758621;ABP=53.5532;AC=4;AF=0.666667;AN=6;AO=105;CIGAR=1X;DP=126;DPB=126;DPRA=0;EPP=231.015;EPPR=48.6112;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=4200;QR=837;RO=21;RPL=0;RPP=231.015;RPPR=48.6112;RPR=105;RUN=1;SAF=105;SAP=231.015;SAR=0;SRF=21;SRP=48.6112;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:68:16,52:16:635:52:2066:-165.647,0,-37.0117 1/1:39:0,39:0:0:39:1570:-141.538,-11.7402,0 0/1:19:5,14:5:202:14:564:-45.3834,0,-12.8423 dDocent_Contig_4366 36 . G A 764.203 . AB=0.113721;ABP=1051.5;AC=3;AF=0.5;AN=6;AO=92;CIGAR=1X;DP=809;DPB=809;DPRA=0;EPP=202.786;EPPR=1555.61;GTI=0;LEN=1;MEANALT=1.33333;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=0.994406;PAO=0;PQA=0;PQR=0;PRO=0;QA=3605;QR=28337;RO=715;RPL=0;RPP=202.786;RPPR=1555.61;RPR=92;RUN=1;SAF=92;SAP=202.786;SAR=0;SRF=715;SRP=1555.61;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:469:416,53:416:16534:53:2035:-42.1569,0,-1345.58 0/1:180:160,20:160:6316:20:797:-17.8643,0,-514.044 0/1:160:139,19:139:5487:19:773:-21.922,0,-445.706 dDocent_Contig_4369 15 . A G 1451.43 . AB=0.251012;ABP=136.015;AC=3;AF=0.5;AN=6;AO=62;CIGAR=1X;DP=247;DPB=247;DPRA=0;EPP=137.642;EPPR=404.733;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=2490;QR=7359;RO=185;RPL=0;RPP=137.642;RPPR=404.733;RPR=62;RUN=1;SAF=62;SAP=137.642;SAR=0;SRF=185;SRP=404.733;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:153:108,45:108:4287:45:1817:-117.675,0,-339.728 0/1:29:21,8:21:838:8:308:-19.3434,0,-67.005 0/1:65:56,9:56:2234:9:365:-13.6475,0,-181.662 dDocent_Contig_4370 22 . A G 192.627 . AB=0.290323;ABP=14.8483;AC=3;AF=0.5;AN=6;AO=9;CIGAR=1X;DP=31;DPB=31;DPRA=0;EPP=22.5536;EPPR=50.7827;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=366;QR=888;RO=22;RPL=0;RPP=22.5536;RPPR=50.7827;RPR=9;RUN=1;SAF=9;SAP=22.5536;SAR=0;SRF=22;SRP=50.7827;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:12:9,3:9:363:3:123:-7.85243,0,-29.4217 0/1:7:5,2:5:199:2:81:-5.57852,0,-16.1811 0/1:12:8,4:8:326:4:162:-11.3546,0,-26.0975 dDocent_Contig_4371 27 . A T 97.5161 . AB=0.142857;ABP=57.2971;AC=1;AF=0.166667;AN=6;AO=9;CIGAR=1X;DP=85;DPB=85;DPRA=0;EPP=22.5536;EPPR=168.042;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=360;QR=3032;RO=76;RPL=0;RPP=22.5536;RPPR=168.042;RPR=9;RUN=1;SAF=9;SAP=22.5536;SAR=0;SRF=76;SRP=168.042;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:49:42,7:42:1685:7:285:-11.2739,0,-137.125 0/0:15:14,1:14:560:1:41:0,-0.420883,-46.6466 0/0:21:20,1:20:787:1:34:0,-2.92272,-67.7416 dDocent_Contig_4372 25 . G A 922.575 . AB=0.342857;ABP=25.5316;AC=3;AF=0.5;AN=6;AO=36;CIGAR=1X;DP=105;DPB=105;DPRA=0;EPP=81.1833;EPPR=152.842;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=1426;QR=2731;RO=69;RPL=0;RPP=81.1833;RPPR=152.842;RPR=36;RUN=1;SAF=36;SAP=81.1833;SAR=0;SRF=69;SRP=152.842;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:56:38,18:38:1510:18:720:-48.2696,0,-119.276 0/1:27:19,8:19:741:8:317:-20.7686,0,-58.8765 0/1:22:12,10:12:480:10:389:-28.7422,0,-36.9227 dDocent_Contig_4373 51 . C A 177.366 . AB=0.154762;ABP=89.9726;AC=2;AF=0.333333;AN=6;AO=13;CIGAR=1X;DP=264;DPB=264;DPRA=0.233333;EPP=31.2394;EPPR=548.05;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=509;QR=9992;RO=251;RPL=13;RPP=31.2394;RPPR=548.05;RPR=0;RUN=1;SAF=13;SAP=31.2394;SAR=0;SRF=251;SRP=548.05;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:180:180,0:180:7174:0:0:0,-54.1854,-645.315 0/1:25:19,6:19:766:6:239:-14.3581,0,-61.7355 0/1:59:52,7:52:2052:7:270:-6.90136,0,-167.113 dDocent_Contig_4374 13 . C T 37.368 . AB=0.15;ABP=24.2907;AC=1;AF=0.166667;AN=6;AO=3;CIGAR=1X;DP=53;DPB=53;DPRA=1.21212;EPP=9.52472;EPPR=111.584;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=55.74;NS=3;NUMALT=1;ODDS=0;PAIRED=0;PAIREDR=0.48;PAO=0;PQA=0;PQR=0;PRO=0;QA=121;QR=2015;RO=50;RPL=0;RPP=9.52472;RPPR=111.584;RPR=3;RUN=1;SAF=3;SAP=9.52472;SAR=0;SRF=50;SRP=111.584;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:20:17,3:17:684:3:121:-5.2596,0,-55.849 0/0:19:19,0:19:762:0:0:0,-5.71957,-66.9446 0/0:14:14,0:14:569:0:0:0,-4.21442,-50.949 dDocent_Contig_4375 8 . T C 52624.8 . AB=0;ABP=0;AC=6;AF=1;AN=6;AO=1633;CIGAR=1X;DP=1745;DPB=1745;DPRA=0;EPP=3549.02;EPPR=233.186;GTI=0;LEN=1;MEANALT=1.66667;MQM=60;MQMR=59.7547;NS=3;NUMALT=1;ODDS=0;PAIRED=0.990814;PAIREDR=0.943396;PAO=0;PQA=0;PQR=0;PRO=0;QA=62550;QR=4037;RO=106;RPL=0;RPP=3549.02;RPPR=233.186;RPR=1633;RUN=1;SAF=1633;SAP=3549.02;SAR=0;SRF=106;SRP=233.186;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 1/1:547:32,514:32:1209:514:19799:-1671.73,-55.3776,0 1/1:678:41,637:41:1576:637:24293:-2042.93,-61.999,0 1/1:520:33,482:33:1252:482:18458:-1547.35,-42.506,0 dDocent_Contig_4376 42 . G A 1512.48 . AB=0.283105;ABP=92.4968;AC=3;AF=0.5;AN=6;AO=62;CIGAR=1X;DP=219;DPB=219;DPRA=0;EPP=137.642;EPPR=343.931;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=2464;QR=6283;RO=157;RPL=0;RPP=137.642;RPPR=343.931;RPR=62;RUN=1;SAF=62;SAP=137.642;SAR=0;SRF=157;SRP=343.931;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:142:109,33:109:4372:33:1309:-75.3255,0,-350.674 0/1:24:11,13:11:436:13:515:-39.4659,0,-32.368 0/1:53:37,16:37:1475:16:640:-41.9798,0,-117.039 dDocent_Contig_4377 24 . T A 2503.87 . AB=0.706897;ABP=46.1402;AC=3;AF=0.5;AN=6;AO=82;CIGAR=1X;DP=116;DPB=116;DPRA=0;EPP=181.071;EPPR=76.8404;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=3222;QR=1352;RO=34;RPL=0;RPP=181.071;RPPR=76.8404;RPR=82;RUN=1;SAF=82;SAP=181.071;SAR=0;SRF=34;SRP=76.8404;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:58:15,43:15:597:43:1661:-132.243,0,-36.6077 0/1:30:9,21:9:365:21:843:-67.1507,0,-24.1836 0/1:28:10,18:10:390:18:718:-56.5165,0,-27.0253 dDocent_Contig_4379 10 . G A 6043.61 . AB=0.653285;ABP=58.9297;AC=4;AF=0.666667;AN=6;AO=179;CIGAR=1X3M;DP=274;DPB=274;DPRA=0;EPP=391.704;EPPR=111.584;GTI=0;LEN=1;MEANALT=2.33333;MQM=60;MQMR=60;NS=3;NUMALT=2;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=7146;QR=1982;RO=50;RPL=0;RPP=391.704;RPPR=111.584;RPR=179;RUN=1;SAF=179;SAP=391.704;SAR=0;SRF=50;SRP=111.584;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 1|1:135:16,27,91:16:632:27,91:1074,3660:-333.23,-249.621,-293.495,-36.4265,0,-61.0346 0|1:61:18,7,36:18:722:7,36:282,1452:-114.269,-96.4442,-153.824,0,-36.2427,-48.6493 0|1:78:16,10,52:16:628:10,52:388,2034:-162.385,-135.325,-183.962,0,-19.7745,-35.9967 dDocent_Contig_4381 36 . C T 5154.63 . AB=0.056338;ABP=124.399;AC=0;AF=0;AN=6;AO=4;CIGAR=1X2M1X3M;DP=253;DPB=253;DPRA=0;EPP=11.6962;EPPR=137.642;GTI=0;LEN=1;MEANALT=3;MQM=60;MQMR=60;NS=3;NUMALT=4;ODDS=0;PAIRED=0;PAIREDR=0.483871;PAO=0;PQA=0;PQR=0;PRO=0;QA=160;QR=2417;RO=62;RPL=0;RPP=11.6962;RPPR=137.642;RPR=4;RUN=1;SAF=4;SAP=11.6962;SAR=0;SRF=62;SRP=137.642;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|0:144:45,12,0,0,87:45:1758:12,0,0,87:468,0,0,3415:-267.28,-242.359,-383.266,-280.827,-386.879,-425.346,-280.827,-386.879,-425.346,-425.346,0,-106.053,-144.521,-144.521,-118.331 0|0:38:11,3,4,0,19:11:432:3,4,0,19:120,151,0,750:-58.3998,-51.8252,-86.4537,-49.3394,-74.9842,-83.6657,-61.7112,-87.3568,-84.8698,-97.2424,0,-25.6474,-23.1633,-35.5342,-29.8147 0|0:71:6,0,0,4,60:6:227:0,0,4,60:0,0,160,2377:-193.856,-195.662,-214.267,-195.662,-214.267,-214.267,-182.482,-201.086,-201.086,-199.882,0,-18.6177,-18.6177,-5.41985,-0.555932 dDocent_Contig_4382 99 . N A 30816 . AB=0;ABP=0;AC=6;AF=1;AN=6;AO=1006;CIGAR=1X;DP=1007;DPB=1007;DPRA=0;EPP=2187.51;EPPR=0;GTI=0;LEN=1;MEANALT=1.33333;MQM=55.5656;MQMR=0;NS=3;NUMALT=1;ODDS=8.67362e-19;PAIRED=0.72167;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=34480;QR=0;RO=0;RPL=1006;RPP=2187.51;RPPR=0;RPR=0;RUN=1;SAF=1006;SAP=2187.51;SAR=0;SRF=0;SRP=0;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 1/1:601:0,600:0:0:600:20661:-1848.68,-180.618,0 1/1:115:0,115:0:0:115:3898:-346.983,-34.6185,0 1/1:291:0,291:0:0:291:9921:-885.333,-87.5997,0 dDocent_Contig_4386 109 . C T 554.773 . AB=0;ABP=0;AC=6;AF=1;AN=6;AO=20;CIGAR=1X;DP=21;DPB=21;DPRA=0;EPP=46.4397;EPPR=5.18177;GTI=0;LEN=1;MEANALT=1;MQM=52.3;MQMR=6;NS=3;NUMALT=1;ODDS=0;PAIRED=0.8;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=671;QR=35;RO=1;RPL=0;RPP=46.4397;RPPR=5.18177;RPR=20;RUN=1;SAF=0;SAP=46.4397;SAR=20;SRF=0;SRP=5.18177;SRR=1;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 1/1:12:0,12:0:0:12:404:-33.1307,-3.61236,0 1/1:4:0,4:0:0:4:128:-11.8364,-1.20412,0 1/1:5:1,4:1:35:4:139:-10.0329,-0.905559,0 dDocent_Contig_4389 18 . C A 27808.9 . AB=0.782762;ABP=792.626;AC=3;AF=0.5;AN=6;AO=890;CIGAR=1X;DP=1137;DPB=1137;DPRA=0;EPP=1926.94;EPPR=491.592;GTI=0;LEN=1;MEANALT=2;MQM=58.3337;MQMR=42.3156;NS=3;NUMALT=1;ODDS=0;PAIRED=0.757303;PAIREDR=0.502222;PAO=0;PQA=0;PQR=0;PRO=0;QA=35392;QR=9036;RO=225;RPL=0;RPP=1935.62;RPPR=491.592;RPR=890;RUN=1;SAF=889;SAP=1926.94;SAR=1;SRF=225;SRP=491.592;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:534:98,428:98:3958:428:17033:-1348.54,0,-137.945 0/1:274:59,210:59:2371:210:8293:-643.433,0,-67.0933 0/1:329:68,252:68:2707:252:10066:-794.447,0,-100.763 dDocent_Contig_4390 7 . A T 174.249 . AB=0.147727;ABP=97.8642;AC=1;AF=0.166667;AN=6;AO=14;CIGAR=1X;DP=169;DPB=169;DPRA=0.982456;EPP=33.4109;EPPR=339.589;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=540;QR=5869;RO=155;RPL=0;RPP=33.4109;RPPR=339.589;RPR=14;RUN=1;SAF=14;SAP=33.4109;SAR=0;SRF=155;SRP=339.589;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:88:75,13:75:2833:13:501:-18.9478,0,-228.66 0/0:24:23,1:23:871:1:39:0,-3.32816,-74.8132 0/0:57:57,0:57:2165:0:0:0,-17.1587,-195.082 dDocent_Contig_4391 100 . N C 6615.72 . AB=0;ABP=0;AC=6;AF=1;AN=6;AO=241;CIGAR=2X;DP=250;DPB=1262;DPRA=0;EPP=526.335;EPPR=0;GTI=0;LEN=1;MEANALT=1.66667;MQM=50.4274;MQMR=0;NS=3;NUMALT=1;ODDS=0;PAIRED=0.414938;PAIREDR=0;PAO=2024;PQA=67247;PQR=0;PRO=0;QA=8091;QR=0;RO=0;RPL=241;RPP=526.335;RPPR=0;RPR=0;RUN=1;SAF=241;SAP=526.335;SAR=0;SRF=0;SRP=0;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 1|1:144:0,137:0:0:137:4578:-368.779,-41.2411,0 1|1:56:0,56:0:0:56:1892:-162.041,-16.8577,0 1|1:50:0,48:0:0:48:1621:-130.275,-14.4494,0 dDocent_Contig_4393 49 . T A 9253.8 . AB=0;ABP=0;AC=6;AF=1;AN=6;AO=767;CIGAR=1M1X8M;DP=1184;DPB=1220.6;DPRA=0;EPP=1668.53;EPPR=98.5551;GTI=0;LEN=1;MEANALT=19.6667;MQM=20.455;MQMR=59.1818;NS=3;NUMALT=3;ODDS=0;PAIRED=0.826597;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=13528;QR=1723;RO=44;RPL=767;RPP=1668.53;RPPR=98.5551;RPR=0;RUN=1;SAF=767;SAP=1668.53;SAR=0;SRF=44;SRP=98.5551;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 1|1:607:24,34,22,420:24:936:34,22,420:338,253,6903:-460.436,-455.366,-522.08,-456.84,-521.494,-527.166,-49.4641,-114.159,-115.623,0 1|1:252:4,16,15,159:4:158:16,15,159:237,144,2755:-204.649,-192.442,-200.631,-200.844,-200.44,-209.334,-34.8503,-34.4532,-42.8625,0 1|1:325:16,27,31,188:16:629:27,31,188:409,371,3870:-259.819,-242.141,-284.659,-248.12,-276.275,-289.435,-5.93097,-34.1077,-40.0951,0 dDocent_Contig_4394 149 . A G 79.3112 . AB=0.163265;ABP=51.2702;AC=2;AF=0.333333;AN=6;AO=8;CIGAR=1X;DP=69;DPB=69;DPRA=1.225;EPP=20.3821;EPPR=133.299;GTI=0;LEN=1;MEANALT=1;MQM=45;MQMR=59.6333;NS=3;NUMALT=1;ODDS=0;PAIRED=0.875;PAIREDR=0.0166667;PAO=0;PQA=0;PQR=0;PRO=0;QA=294;QR=2275;RO=60;RPL=0;RPP=20.3821;RPPR=133.299;RPR=8;RUN=1;SAF=0;SAP=20.3821;SAR=8;SRF=0;SRP=133.299;SRR=60;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:41:35,6:35:1337:6:224:-7.37943,0,-108.274 0/1:8:6,2:6:230:2:70:-4.07335,0,-18.6584 0/0:20:19,0:19:708:0:0:0,-5.71957,-63.6623 dDocent_Contig_4397 16 . G A 20498.6 . AB=0.687651;ABP=255.648;AC=6;AF=1;AN=6;AO=568;CIGAR=1X4M;DP=826;DPB=832;DPRA=0;EPP=1236.41;EPPR=111.584;GTI=0;LEN=1;MEANALT=7.66667;MQM=59.9155;MQMR=54.92;NS=3;NUMALT=3;ODDS=0;PAIRED=0.992958;PAIREDR=0.9;PAO=0;PQA=0;PQR=0;PRO=0;QA=22462;QR=1932;RO=50;RPL=0;RPP=1236.41;RPPR=111.584;RPR=568;RUN=1;SAF=568;SAP=1236.41;SAR=0;SRF=50;SRP=111.584;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 1|1:454:27,60,23,299:27:1045:60,23,299:2367,891,11887:-1081.95,-895.328,-960.588,-1016.89,-905.459,-1093.29,-111.432,0,-121.562,-104.744 1|1:146:17,16,4,101:17:649:16,4,101:628,156,3961:-330.203,-283.673,-320.944,-322.498,-312.937,-363.382,-9.59828,0,-38.8394,-21.2614 1|1:226:6,37,7,168:6:238:37,7,168:1468,268,6614:-643.226,-524.194,-532.648,-623.04,-521.794,-640.525,-101.249,0,-98.8513,-70.2687 dDocent_Contig_4398 20 . A G 29168.4 . AB=0.454804;ABP=40.5008;AC=3;AF=0.5;AN=6;AO=961;CIGAR=1X1M1I6M1X1M1X;DP=2113;DPB=2238.73;DPRA=0;EPP=2089.8;EPPR=758.683;GTI=0;LEN=1;MEANALT=23;MQM=59.7367;MQMR=59.7069;NS=3;NUMALT=5;ODDS=4.44089e-16;PAIRED=1;PAIREDR=0.991379;PAO=0;PQA=0;PQR=0;PRO=0;QA=36892;QR=13634;RO=348;RPL=0;RPP=2089.8;RPPR=758.683;RPR=961;RUN=1;SAF=961;SAP=2089.8;SAR=0;SRF=348;SRP=758.683;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|1:1037:171,476,64,42,97,50:171:6715:476,64,42,97,50:18345,2448,1684,3743,2005:-1453.98,0,-408.993,-1305.68,-352.502,-1838.69,-1366.71,-413.539,-1719.21,-1906.35,-1198.15,-244.973,-1550.65,-1611.68,-1721.23,-1340.31,-387.134,-1692.81,-1753.85,-1585.28,-1877.54 0|1:560:93,263,35,32,65,22:93:3620:263,35,32,65,22:10024,1341,1254,2529,863:-794.123,0,-215.011,-712.078,-184.142,-995.725,-719.01,-191.074,-903.153,-1003.56,-614.301,-86.3653,-798.444,-805.377,-888.918,-751.154,-223.218,-935.297,-942.229,-837.52,-1038.71 0|1:516:84,222,46,46,32,31:84:3299:222,46,46,32,31:8523,1718,1819,1256,1237:-674.256,0,-204.508,-560.028,-131.824,-817.516,-549.852,-121.646,-681.674,-807.34,-596.257,-168.052,-728.078,-717.903,-857.959,-597.671,-169.465,-729.492,-719.317,-765.721,-859.674 dDocent_Contig_4399 24 . T C 1409.28 . AB=0.0793358;ABP=1669.16;AC=1;AF=0.166667;AN=6;AO=86;CIGAR=3M1X6M;DP=1084;DPB=1074.1;DPRA=0;EPP=189.757;EPPR=1707.62;GTI=0;LEN=1;MEANALT=9;MQM=60;MQMR=60;NS=3;NUMALT=3;ODDS=0;PAIRED=0.988372;PAIREDR=0.987261;PAO=0;PQA=0;PQR=0;PRO=0;QA=3424;QR=31021;RO=785;RPL=0;RPP=189.757;RPPR=1707.62;RPR=86;RUN=1;SAF=86;SAP=189.757;SAR=0;SRF=785;SRP=1707.62;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|0:663:472,12,58,73:472:18651:12,58,73:418,2288,2873:-94.2241,-205.418,-1736.57,-48.0885,-1551.96,-1565.39,0,-1503.87,-1346.55,-1512.79 0|0:114:90,1,1,17:90:3565:1,1,17:40,39,679:-28.8639,-52.9292,-346.06,-52.7505,-343.155,-345.882,0,-290.437,-290.259,-288.347 0|1:307:223,16,27,26:223:8805:16,27,26:529,1097,1010:-23.3632,-50.438,-770.135,0,-684.472,-716.409,-7.51238,-691.977,-641.562,-724.216 dDocent_Contig_4400 16 . G A 1585.78 . AB=0.0625;ABP=109.412;AC=4;AF=0.666667;AN=6;AO=4;CIGAR=1M1X;DP=96;DPB=130.5;DPRA=12.8;EPP=11.6962;EPPR=52.9542;GTI=0;LEN=1;MEANALT=2;MQM=23.25;MQMR=60;NS=3;NUMALT=2;ODDS=0;PAIRED=0.25;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=145;QR=921;RO=23;RPL=0;RPP=11.6962;RPPR=52.9542;RPR=4;RUN=1;SAF=4;SAP=11.6962;SAR=0;SRF=23;SRP=52.9542;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|1:64:18,42,4:18:717:42,4:1640,145:-97.259,0,-46.5794,-97.5097,-54.0838,-155.376 1|1:5:0,5,0:0:0:5,0:202,0:-6.47239,-1.50515,0,-6.47239,-1.50515,-6.47239 0|1:27:5,22,0:5:204:22,0:853,0:-58.3693,0,-10.6162,-59.8744,-17.2389,-76.7194 dDocent_Contig_4401 7 . C A 11478.3 . AB=0.785714;ABP=32.7905;AC=5;AF=0.833333;AN=6;AO=345;CIGAR=1X3M;DP=372;DPB=372;DPRA=0;EPP=752.168;EPPR=33.4109;GTI=0;LEN=1;MEANALT=2;MQM=60;MQMR=60;NS=3;NUMALT=2;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=13253;QR=530;RO=14;RPL=0;RPP=752.168;RPPR=33.4109;RPR=345;RUN=1;SAF=345;SAP=752.168;SAR=0;SRF=14;SRP=33.4109;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 1|1:236:4,3,229:4:150:3,229:113,8782:-776.261,-768.205,-779.588,-56.651,-59.6753,0 0|1:42:5,4,33:5:185:4,33:151,1278:-103.492,-92.6219,-106.549,0,-2.74977,-5.19511 1|1:94:5,6,83:5:195:6,83:227,3193:-269.601,-252.497,-266.721,-8.95083,-6.38273,0 dDocent_Contig_4402 8 . T C 33.4322 . AB=0.115942;ABP=91.4113;AC=2;AF=0.333333;AN=6;AO=19;CIGAR=1X;DP=203;DPB=203;DPRA=0;EPP=44.2683;EPPR=402.561;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=716;QR=7007;RO=184;RPL=0;RPP=44.2683;RPPR=402.561;RPR=19;RUN=1;SAF=19;SAP=44.2683;SAR=0;SRF=184;SRP=402.561;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:134:123,11:123:4700:11:418:0,-2.3671,-385.074 0/1:19:17,2:17:636:2:78:-1.6839,0,-51.8534 0/1:50:44,6:44:1671:6:220:-5.1021,0,-135.601 dDocent_Contig_4403 65 . T G 2081.7 . AB=0.708333;ABP=39.2015;AC=3;AF=0.5;AN=6;AO=68;CIGAR=1X;DP=96;DPB=96;DPRA=0;EPP=150.67;EPPR=63.8115;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=0.928571;PAO=0;PQA=0;PQR=0;PRO=0;QA=2685;QR=1100;RO=28;RPL=68;RPP=150.67;RPPR=63.8115;RPR=0;RUN=1;SAF=68;SAP=150.67;SAR=0;SRF=28;SRP=63.8115;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:64:21,43:21:815:43:1691:-133.142,0,-54.3984 0/1:17:2,15:2:82:15:597:-48.9507,0,-2.66217 0/1:15:5,10:5:203:10:397:-31.5699,0,-14.1376 dDocent_Contig_4404 10 . G C 1200.11 . AB=0.248826;ABP=119.729;AC=3;AF=0.5;AN=6;AO=53;CIGAR=1X;DP=213;DPB=213;DPRA=0;EPP=118.098;EPPR=343.931;GTI=0;LEN=1;MEANALT=1.33333;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=1.38778e-17;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=2091;QR=6243;RO=157;RPL=0;RPP=118.098;RPPR=343.931;RPR=53;RUN=1;SAF=53;SAP=118.098;SAR=0;SRF=157;SRP=343.931;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:100:87,10:87:3479:10:380:-4.93741,0,-283.54 0/1:42:23,19:23:904:19:746:-54.819,0,-69.0248 0/1:71:47,24:47:1860:24:965:-65.7773,0,-146.23 dDocent_Contig_4405 9 . C A 1899.25 . AB=0.475862;ABP=3.74411;AC=3;AF=0.5;AN=6;AO=69;CIGAR=1X;DP=145;DPB=145;DPRA=0;EPP=152.842;EPPR=168.042;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=2646;QR=2927;RO=76;RPL=0;RPP=152.842;RPPR=168.042;RPR=69;RUN=1;SAF=69;SAP=152.842;SAR=0;SRF=76;SRP=168.042;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:85:40,45:40:1541:45:1725:-129.92,0,-113.373 0/1:37:29,8:29:1113:8:306:-16.7623,0,-89.3341 0/1:23:7,16:7:273:16:615:-48.7652,0,-18.0143 dDocent_Contig_4407 15 . G C 7941.45 . AB=0;ABP=0;AC=6;AF=1;AN=6;AO=236;CIGAR=1X;DP=253;DPB=253;DPRA=0;EPP=515.478;EPPR=39.9253;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=9513;QR=684;RO=17;RPL=0;RPP=515.478;RPPR=39.9253;RPR=236;RUN=1;SAF=236;SAP=515.478;SAR=0;SRF=17;SRP=39.9253;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 1/1:137:9,128:9:365:128:5163:-431.295,-8.02605,0 1/1:42:2,40:2:77:40:1602:-137.103,-5.33506,0 1/1:74:6,68:6:242:68:2748:-225.268,-0.119777,0 dDocent_Contig_4408 54 . G A 2553.51 . AB=0.0176211;ABP=461.803;AC=0;AF=0;AN=6;AO=4;CIGAR=1X2M1X;DP=227;DPB=227;DPRA=0;EPP=11.6962;EPPR=263.587;GTI=0;LEN=1;MEANALT=2.33333;MQM=60;MQMR=60;NS=3;NUMALT=2;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=143;QR=4351;RO=120;RPL=4;RPP=11.6962;RPPR=263.587;RPR=0;RUN=1;SAF=4;SAP=11.6962;SAR=0;SRF=120;SRP=263.587;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|0:159:93,1,65:93:3373:1,65:39,2312:-160.359,-185.148,-460.238,0,-272.153,-255.793 0|0:21:5,2,14:5:186:2,14:67,506:-39.8172,-35.8996,-50.5245,0,-9.83502,-11.0362 0|0:47:22,1,23:22:792:1,23:37,824:-60.6981,-64.2928,-128.61,0,-61.712,-57.8162 dDocent_Contig_4409 46 . G T 4370.14 . AB=0.753623;ABP=80.1133;AC=4;AF=0.666667;AN=6;AO=136;CIGAR=2X;DP=170;DPB=170;DPRA=0;EPP=298.331;EPPR=76.8404;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=6.93889e-18;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=5349;QR=1283;RO=34;RPL=0;RPP=298.331;RPPR=76.8404;RPR=136;RUN=1;SAF=136;SAP=298.331;SAR=0;SRF=34;SRP=76.8404;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|1:83:14,69:14:532:69:2719:-219.85,0,-23.2347 1|1:32:0,32:0:0:32:1251:-112.872,-9.63296,0 0|1:55:20,35:20:751:35:1379:-107.815,0,-51.3551 dDocent_Contig_4410 7 . A G 103.641 . AB=0.16129;ABP=64.7922;AC=1;AF=0.166667;AN=6;AO=10;CIGAR=1X;DP=122;DPB=122;DPRA=2.06667;EPP=24.725;EPPR=246.215;GTI=0;LEN=1;MEANALT=1;MQM=58.8;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=336;QR=4252;RO=112;RPL=0;RPP=24.725;RPPR=246.215;RPR=10;RUN=1;SAF=10;SAP=24.725;SAR=0;SRF=112;SRP=246.215;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:62:52,10:52:1987:10:336:-11.8869,0,-160.407 0/0:9:9,0:9:341:0:0:0,-2.70927,-31.045 0/0:51:51,0:51:1924:0:0:0,-15.3525,-173.405 dDocent_Contig_4413 10 . C A 3370.93 . AB=0.136364;ABP=28.2783;AC=1;AF=0.166667;AN=6;AO=3;CIGAR=1X2M1X;DP=137;DPB=137;DPRA=0;EPP=9.52472;EPPR=65.983;GTI=0;LEN=1;MEANALT=2;MQM=60;MQMR=60;NS=3;NUMALT=2;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=119;QR=1158;RO=29;RPL=0;RPP=9.52472;RPPR=65.983;RPR=3;RUN=1;SAF=3;SAP=9.52472;SAR=0;SRF=29;SRP=65.983;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|0:84:14,0,70:14:558:0,70:0,2801:-226.906,-231.12,-277.071,0,-46.3486,-25.2765 1|0:22:1,3,18:1:41:3,18:119,717:-65.1371,-55.6427,-58.1243,-6.39839,0,-4.36723 0|0:31:14,0,17:14:559:0,17:0,662:-50.5722,-54.7866,-100.83,0,-46.4381,-41.3205 dDocent_Contig_4414 19 . A G 617.334 . AB=0.301205;ABP=31.5011;AC=2;AF=0.333333;AN=6;AO=26;CIGAR=1X;DP=99;DPB=99;DPRA=0;EPP=59.4686;EPPR=161.528;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=1036;QR=2829;RO=73;RPL=0;RPP=59.4686;RPPR=161.528;RPR=26;RUN=1;SAF=26;SAP=59.4686;SAR=0;SRF=73;SRP=161.528;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:59:39,20:39:1504:20:797:-54.2843,0,-117.829 0/1:24:19,5:19:756:5:198:-10.9717,0,-61.1395 0/0:16:15,1:15:569:1:41:0,-0.721913,-47.4477 dDocent_Contig_4415 13 . T C 119.664 . AB=0.206897;ABP=24.6501;AC=1;AF=0.166667;AN=6;AO=8;CIGAR=1X;DP=73;DPB=73;DPRA=5.58333;EPP=20.3821;EPPR=144.156;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=328;QR=2622;RO=65;RPL=0;RPP=20.3821;RPPR=144.156;RPR=8;RUN=1;SAF=8;SAP=20.3821;SAR=0;SRF=65;SRP=144.156;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:38:36,2:36:1449:2:82:0,-3.65946,-122.878 0/0:6:6,0:6:245:0:0:0,-1.80618,-22.4295 0/1:29:23,6:23:928:6:246:-13.7902,0,-75.0924 dDocent_Contig_4416 127 . G A 7224.85 . AB=0.683473;ABP=107.393;AC=3;AF=0.5;AN=6;AO=244;CIGAR=1X;DP=357;DPB=357;DPRA=0;EPP=532.85;EPPR=248.387;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=9278;QR=4280;RO=113;RPL=0;RPP=532.85;RPPR=248.387;RPR=244;RUN=1;SAF=0;SAP=532.85;SAR=244;SRF=0;SRP=248.387;SRR=113;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:181:69,112:69:2611:112:4299:-332.49,0,-180.695 0/1:65:12,53:12:455:53:1954:-156.524,0,-21.7277 0/1:111:32,79:32:1214:79:3025:-238.994,0,-76.1375 dDocent_Contig_4417 47 . T G 43.6786 . AB=0.119048;ABP=55.9529;AC=1;AF=0.166667;AN=6;AO=7;CIGAR=1X;DP=122;DPB=122;DPRA=1.67857;EPP=18.2106;EPPR=252.73;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=287;QR=4595;RO=115;RPL=0;RPP=18.2106;RPPR=252.73;RPR=7;RUN=1;SAF=7;SAP=18.2106;SAR=0;SRF=115;SRP=252.73;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:52:50,2:50:2001:2:82:0,-7.87388,-172.496 0/0:28:28,0:28:1096:0:0:0,-8.42884,-98.9211 0/1:42:37,5:37:1498:5:205:-6.19175,0,-122.416 dDocent_Contig_4418 60 . A G 783.442 . AB=0.316327;ABP=31.7269;AC=2;AF=0.333333;AN=6;AO=32;CIGAR=1X;DP=112;DPB=112;DPRA=0;EPP=72.4974;EPPR=176.728;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=0.975;PAO=0;PQA=0;PQR=0;PRO=0;QA=1270;QR=3162;RO=80;RPL=32;RPP=72.4974;RPPR=176.728;RPR=0;RUN=1;SAF=32;SAP=72.4974;SAR=0;SRF=80;SRP=176.728;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:75:48,27:48:1919:27:1072:-74.1905,0,-150.336 0/1:23:19,4:19:725:4:158:-7.67567,0,-58.6371 0/0:14:13,1:13:518:1:40:0,-0.218741,-42.9719 dDocent_Contig_4419 91 . C T 206.626 . AB=0.428571;ABP=3.94093;AC=1;AF=0.166667;AN=6;AO=9;CIGAR=1X;DP=37;DPB=37;DPRA=2.625;EPP=22.5536;EPPR=63.8115;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=313;QR=968;RO=28;RPL=9;RPP=22.5536;RPPR=63.8115;RPR=0;RUN=1;SAF=9;SAP=22.5536;SAR=0;SRF=28;SRP=63.8115;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:21:12,9:12:424:9:313:-22.1854,0,-32.1749 0/0:7:7,0:7:252:0:0:0,-2.10721,-23.029 0/0:9:9,0:9:292:0:0:0,-2.70927,-26.5944 dDocent_Contig_4420 28 . A G 942.592 . AB=0.376344;ABP=15.362;AC=3;AF=0.5;AN=6;AO=35;CIGAR=1X;DP=93;DPB=93;DPRA=0;EPP=79.0118;EPPR=128.956;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=0.942857;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=1408;QR=2222;RO=58;RPL=0;RPP=79.0118;RPPR=128.956;RPR=35;RUN=1;SAF=35;SAP=79.0118;SAR=0;SRF=58;SRP=128.956;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:56:33,23:33:1242:23:923:-66.5156,0,-95.187 0/1:20:15,5:15:588:5:201:-12.4499,0,-47.232 0/1:17:10,7:10:392:7:284:-20.8165,0,-30.519 dDocent_Contig_4421 37 . C G 59.1481 . AB=0.0909091;ABP=66.97;AC=2;AF=0.333333;AN=6;AO=4;CIGAR=1X1M1X1M2X1M1X1M1X1M1X2M4D1M;DP=59;DPB=56.8947;DPRA=1.46667;EPP=11.6962;EPPR=107.241;GTI=0;LEN=1;MEANALT=2.5;MQM=60;MQMR=60;NS=3;NUMALT=2;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=158;QR=1847;RO=48;RPL=0;RPP=11.6962;RPPR=107.241;RPR=4;RUN=1;SAF=4;SAP=11.6962;SAR=0;SRF=48;SRP=107.241;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|1:33:26,3,3:26:1013:3,3:120,118:-2.05953,0,-82.3506,-0.183529,-73.5468,-82.5299 0|1:11:7,3,1:7:265:3,1:115,40:-7.19945,0,-20.8037,-6.00636,-18.4091,-27.4305 0|0:15:15,0,0:15:569:0,0:0,0:0,-4.51545,-51.5437,-4.51545,-51.5437,-51.5437 dDocent_Contig_4422 29 . T C 301.046 . AB=0.282609;ABP=21.8927;AC=3;AF=0.5;AN=6;AO=13;CIGAR=1X;DP=46;DPB=46;DPRA=0;EPP=31.2394;EPPR=74.6689;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=3.46945e-18;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=524;QR=1328;RO=33;RPL=0;RPP=31.2394;RPPR=74.6689;RPR=13;RUN=1;SAF=13;SAP=31.2394;SAR=0;SRF=33;SRP=74.6689;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:29:18,11:18:726:11:443:-31.4953,0,-56.936 0/1:10:9,1:9:362:1:40:-0.985379,0,-29.9332 0/1:7:6,1:6:240:1:41:-1.98736,0,-19.8679 dDocent_Contig_4423 9 . G A 1677.87 . AB=0.406667;ABP=14.3599;AC=3;AF=0.5;AN=6;AO=61;CIGAR=1X2M1X3M1X;DP=150;DPB=150;DPRA=0;EPP=135.47;EPPR=181.071;GTI=0;LEN=1;MEANALT=1.66667;MQM=60;MQMR=60;NS=3;NUMALT=2;ODDS=0;PAIRED=1;PAIREDR=0.682927;PAO=0;PQA=0;PQR=0;PRO=0;QA=2402;QR=3218;RO=82;RPL=0;RPP=135.47;RPPR=181.071;RPR=61;RUN=1;SAF=61;SAP=135.47;SAR=0;SRF=82;SRP=181.071;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|1:79:45,28,6:45:1760:28,6:1108,227:-77.6584,0,-136.286,-72.6021,-126.111,-215.497 0|1:18:9,9,0:9:355:9,0:344,0:-25.8955,0,-26.8939,-28.6048,-29.6032,-57.82 0|1:53:28,24,1:28:1103:24,1:950,40:-69.7563,0,-83.5139,-74.8899,-87.4434,-165.332 dDocent_Contig_4424 8 . T A 47.7012 . AB=0.135135;ABP=45.7942;AC=2;AF=0.333333;AN=6;AO=5;CIGAR=1X;DP=48;DPB=48;DPRA=1.68182;EPP=13.8677;EPPR=96.3836;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=193;QR=1631;RO=43;RPL=0;RPP=13.8677;RPPR=96.3836;RPR=5;RUN=1;SAF=5;SAP=13.8677;SAR=0;SRF=43;SRP=96.3836;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:11:11,0:11:423:0:0:0,-3.31133,-38.4232 0/1:26:22,4:22:848:4:156:-6.59051,0,-68.816 0/1:11:10,1:10:360:1:37:-0.386499,0,-29.4237 dDocent_Contig_4426 25 . T G 34.5566 . AB=0.117647;ABP=67.7713;AC=2;AF=0.333333;AN=6;AO=6;CIGAR=1X;DP=83;DPB=83;DPRA=0.796875;EPP=16.0391;EPPR=170.214;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=54.013;NS=3;NUMALT=1;ODDS=3.46945e-18;PAIRED=0;PAIREDR=0.883117;PAO=0;PQA=0;PQR=0;PRO=0;QA=239;QR=3034;RO=77;RPL=0;RPP=16.0391;RPPR=170.214;RPR=6;RUN=1;SAF=6;SAP=16.0391;SAR=0;SRF=77;SRP=170.214;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:41:37,4:37:1434:4:160:-2.44157,0,-99.0056 0/1:10:8,2:8:316:2:79:-4.48694,0,-25.6636 0/0:32:32,0:32:1284:0:0:0,-9.63296,-115.674 dDocent_Contig_4427 162 . T A 53.4275 . AB=0.285714;ABP=5.80219;AC=1;AF=0.166667;AN=6;AO=2;CIGAR=3X;DP=38;DPB=38;DPRA=0.411765;EPP=7.35324;EPPR=74.6689;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=2;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=78;QR=1307;RO=33;RPL=2;RPP=7.35324;RPPR=74.6689;RPR=0;RUN=1;SAF=0;SAP=7.35324;SAR=2;SRF=0;SRP=74.6689;SRR=33;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|0:14:12,0,2:12:476:0,2:0,82:-3.56526,-7.17762,-46.3483,0,-39.5783,-38.9762 0|1:7:5,2,0:5:196:2,0:78,0:-5.29626,0,-15.9071,-6.80141,-16.5092,-22.9203 0|0:17:16,0,1:16:635:0,1:0,40:0,-4.81648,-57.0823,-1.12183,-53.7871,-53.486 dDocent_Contig_4428 107 . N G 253.58 . AB=0;ABP=0;AC=2;AF=1;AN=2;AO=8;CIGAR=1X;DP=8;DPB=8;DPRA=0;EPP=20.3821;EPPR=0;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=0;NS=1;NUMALT=1;ODDS=10.1503;PAIRED=1;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=278;QR=0;RO=0;RPL=0;RPP=20.3821;RPPR=0;RPR=8;RUN=1;SAF=0;SAP=20.3821;SAR=8;SRF=0;SRP=0;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL ./.:.:.:.:.:.:.:. ./.:.:.:.:.:.:.:. 1/1:8:0,8:0:0:8:278:-25.358,-2.40824,0 dDocent_Contig_4430 21 . T C 13995.4 . AB=0.809701;ABP=449.556;AC=3;AF=0.5;AN=6;AO=434;CIGAR=1X;DP=536;DPB=536;DPRA=0;EPP=945.429;EPPR=222.329;GTI=0;LEN=1;MEANALT=1.33333;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=17413;QR=4016;RO=101;RPL=0;RPP=945.429;RPPR=222.329;RPR=434;RUN=1;SAF=434;SAP=945.429;SAR=0;SRF=101;SRP=222.329;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:278:50,228:50:1978:228:9146:-738.875,0,-94.5263 0/1:147:36,110:36:1441:110:4399:-351.5,0,-85.5924 0/1:111:15,96:15:597:96:3868:-314.692,0,-20.6535 dDocent_Contig_4431 7 . G A 115.848 . AB=0.3125;ABP=7.89611;AC=1;AF=0.166667;AN=6;AO=5;CIGAR=1X;DP=46;DPB=46;DPRA=1.06667;EPP=13.8677;EPPR=92.0407;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=195;QR=1397;RO=41;RPL=0;RPP=13.8677;RPPR=92.0407;RPR=5;RUN=1;SAF=5;SAP=13.8677;SAR=0;SRF=41;SRP=92.0407;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:16:11,5:11:347:5:195:-13.1077,0,-26.7132 0/0:23:23,0:23:802:0:0:0,-6.92369,-72.4845 0/0:7:7,0:7:248:0:0:0,-2.10721,-22.6572 dDocent_Contig_4433 10 . C A 51.6466 . AB=0.122807;ABP=73.4498;AC=1;AF=0.166667;AN=6;AO=7;CIGAR=1X;DP=124;DPB=124;DPRA=1.70149;EPP=18.2106;EPPR=257.073;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=3.46945e-18;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=261;QR=4695;RO=117;RPL=0;RPP=18.2106;RPPR=257.073;RPR=7;RUN=1;SAF=7;SAP=18.2106;SAR=0;SRF=117;SRP=257.073;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:57:50,7:50:2013:7:261:-6.68754,0,-164.191 0/0:30:30,0:30:1209:0:0:0,-9.0309,-109.084 0/0:37:37,0:37:1473:0:0:0,-11.1381,-132.816 dDocent_Contig_4434 11 . C A 14430 . AB=0.0822873;ABP=1089.66;AC=0;AF=0;AN=6;AO=59;CIGAR=1X2M1I4M;DP=717;DPB=816.286;DPRA=0;EPP=131.127;EPPR=52.9542;GTI=0;LEN=1;MEANALT=15.6667;MQM=60;MQMR=60;NS=3;NUMALT=4;ODDS=0;PAIRED=0.864407;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=2307;QR=882;RO=23;RPL=0;RPP=131.127;RPPR=52.9542;RPR=59;RUN=1;SAF=59;SAP=131.127;SAR=0;SRF=23;SRP=52.9542;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|0:232:10,25,32,117,11:10:377:25,32,117,11:958,1245,4526,421:-440.079,-364.472,-387.834,-340.784,-293.055,-362.04,-71.4174,-23.6887,0,-67.0845,-408.547,-360.819,-337.131,-67.7636,-436.124 0|0:260:6,15,16,164,30:6:236:15,16,164,30:592,620,6371,1158:-597.071,-550.166,-565.064,-547.944,-518.647,-562.541,-75.6753,-46.3775,-44.1564,-45.7204,-503.787,-474.49,-472.268,0,-514.17 0|0:225:7,19,25,110,21:7:269:19,25,110,21:757,985,4312,833:-411.374,-351.142,-367.505,-332.45,-292.194,-347.007,-58.9494,-18.6923,0,-47.9186,-344.913,-304.657,-285.965,-12.4633,-360.674 dDocent_Contig_4435 14 . C A 175.297 . AB=0.157895;ABP=99.5837;AC=2;AF=0.333333;AN=6;AO=15;CIGAR=1X;DP=113;DPB=113;DPRA=2.63889;EPP=35.5824;EPPR=111.584;GTI=0;LEN=1;MEANALT=1;MQM=40;MQMR=57.6224;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=0.816327;PAO=0;PQA=0;PQR=0;PRO=0;QA=582;QR=3825;RO=98;RPL=0;RPP=35.5824;RPPR=215.815;RPR=15;RUN=1;SAF=15;SAP=35.5824;SAR=0;SRF=84;SRP=111.584;SRR=14;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:57:50,7:50:1977:7:274:-6.14964,0,-160.014 0/0:18:18,0:18:699:0:0:0,-5.41854,-61.863 0/1:38:30,8:30:1149:8:308:-14.903,0,-89.5339 dDocent_Contig_4436 89 . A G 56.351 . AB=0.235294;ABP=13.3567;AC=1;AF=0.166667;AN=6;AO=8;CIGAR=1X;DP=130;DPB=130;DPRA=0;EPP=20.3821;EPPR=267.93;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=274;QR=4187;RO=122;RPL=8;RPP=20.3821;RPPR=267.93;RPR=0;RUN=1;SAF=8;SAP=20.3821;SAR=0;SRF=122;SRP=267.93;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:90:88,2:88:3032:2:68:0,-20.6348,-266.668 0/1:17:13,4:13:447:4:136:-7.45824,0,-35.4416 0/0:23:21,2:21:708:2:70:0,-0.276294,-57.3887 dDocent_Contig_4437 29 . C A 126.017 . AB=0.271186;ABP=29.8409;AC=3;AF=0.5;AN=6;AO=16;CIGAR=1X;DP=59;DPB=59;DPRA=0;EPP=37.7539;EPPR=96.3836;GTI=0;LEN=1;MEANALT=1;MQM=25;MQMR=59.7674;NS=3;NUMALT=1;ODDS=3.46945e-18;PAIRED=0.875;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=645;QR=1740;RO=43;RPL=0;RPP=37.7539;RPPR=96.3836;RPR=16;RUN=1;SAF=16;SAP=37.7539;SAR=0;SRF=43;SRP=96.3836;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:17:13,4:13:530:4:160:-6.71792,0,-42.9186 0/1:22:15,7:15:604:7:283:-7.25159,0,-48.0716 0/1:20:15,5:15:606:5:202:-4.15409,0,-48.8491 dDocent_Contig_4438 14 . C A 64514.4 . AB=0.139545;ABP=2679.91;AC=6;AF=1;AN=6;AO=331;CIGAR=1X1M;DP=2372;DPB=2372;DPRA=0;EPP=678.994;EPPR=87.6977;GTI=0;LEN=1;MEANALT=8.66667;MQM=52.571;MQMR=60;NS=3;NUMALT=2;ODDS=2.22045e-16;PAIRED=0.779456;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=12209;QR=1548;RO=39;RPL=0;RPP=721.768;RPPR=87.6977;RPR=331;RUN=1;SAF=326;SAP=678.994;SAR=5;SRF=39;SRP=87.6977;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 1|1:975:13,754,138:13:528:754,138:29775,5171:-2697.55,-370.531,-187.104,-2287.38,0,-2289.38 1|1:687:12,524,89:12:465:524,89:20698,3248:-1856.35,-221.875,-102.336,-1599.89,0,-1611.29 1|1:710:14,536,104:14:555:536,104:21106,3790:-1903.07,-258.879,-143.212,-1602.71,0,-1617.09 dDocent_Contig_4439 21 . C T 3860.3 . AB=0.450512;ABP=9.24309;AC=3;AF=0.5;AN=6;AO=132;CIGAR=1X;DP=293;DPB=293;DPRA=0;EPP=289.645;EPPR=335.246;GTI=0;LEN=1;MEANALT=1.33333;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=5301;QR=6099;RO=153;RPL=0;RPP=289.645;RPPR=335.246;RPR=132;RUN=1;SAF=132;SAP=289.645;SAR=0;SRF=153;SRP=335.246;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:163:89,66:89:3545:66:2648:-191.391,0,-272.022 0/1:30:21,9:21:822:9:367:-24.3644,0,-65.2588 0/1:100:43,57:43:1732:57:2286:-175.798,0,-125.988 dDocent_Contig_4441 21 . C A 1003.33 . AB=0.209607;ABP=170.745;AC=3;AF=0.5;AN=6;AO=48;CIGAR=1X;DP=229;DPB=229;DPRA=0;EPP=107.241;EPPR=396.047;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=1.38778e-17;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=1931;QR=7247;RO=181;RPL=0;RPP=107.241;RPPR=396.047;RPR=48;RUN=1;SAF=48;SAP=107.241;SAR=0;SRF=181;SRP=396.047;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:123:101,22:101:4049:22:887:-43.1106,0,-327.348 0/1:30:24,6:24:960:6:243:-13.2173,0,-77.6702 0/1:76:56,20:56:2238:20:801:-49.5278,0,-178.709 dDocent_Contig_4442 32 . G T 134.254 . AB=0.169492;ABP=58.9901;AC=3;AF=0.5;AN=6;AO=10;CIGAR=2X;DP=59;DPB=59;DPRA=0;EPP=24.725;EPPR=105.07;GTI=0;LEN=1;MEANALT=1.33333;MQM=60;MQMR=60;NS=3;NUMALT=2;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=393;QR=1887;RO=47;RPL=0;RPP=24.725;RPPR=105.07;RPR=10;RUN=1;SAF=10;SAP=24.725;SAR=0;SRF=47;SRP=105.07;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|1:27:22,3,2:22:886:3,2:123,80:-3.53552,0,-72.1226,-3.57218,-66.436,-75.987 0|1:10:8,2,0:8:316:2,0:74,0:-4.01513,0,-25.7938,-6.42337,-26.3958,-32.4445 0|1:22:17,5,0:17:685:5,0:196,0:-11.392,0,-55.3562,-16.5096,-56.8614,-72.9769 dDocent_Contig_4443 1 . N G 111.879 . AB=0;ABP=0;AC=2;AF=1;AN=2;AO=3;CIGAR=1X;DP=3;DPB=3;DPRA=0;EPP=9.52472;EPPR=0;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=0;NS=1;NUMALT=1;ODDS=6.68461;PAIRED=1;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=120;QR=0;RO=0;RPL=0;RPP=9.52472;RPPR=0;RPR=3;RUN=1;SAF=3;SAP=9.52472;SAR=0;SRF=0;SRP=0;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL ./.:.:.:.:.:.:.:. 1/1:3:0,3:0:0:3:120:-11.1873,-0.90309,0 ./.:.:.:.:.:.:.:. dDocent_Contig_4444 37 . T G 7069.48 . AB=0.0864198;ABP=604.723;AC=4;AF=0.666667;AN=6;AO=35;CIGAR=1M1X18M;DP=405;DPB=378.6;DPRA=0;EPP=62.6327;EPPR=111.584;GTI=0;LEN=1;MEANALT=10;MQM=60;MQMR=60;NS=3;NUMALT=6;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=1394;QR=1913;RO=50;RPL=2;RPP=62.6327;RPPR=111.584;RPR=33;RUN=1;SAF=35;SAP=79.0118;SAR=0;SRF=50;SRP=111.584;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|1:203:27,14,9,5,105,14,17:27:1050:14,9,5,105,14,17:550,350,199,4092,544,678:-328.194,-291.083,-373.157,-307.561,-348.611,-391.14,-319.935,-360.985,-377.463,-404.718,0,-41.0495,-57.5276,-69.9014,-54.6799,-291.623,-332.673,-349.151,-361.525,-41.5896,-373.697,-280.487,-321.537,-338.015,-350.389,-30.4529,-322.077,-361.658 1|1:42:2,0,0,4,32,1,1:2:77:0,0,4,32,1,1:0,0,160,1212,40,40:-105.593,-106.195,-112.517,-106.195,-112.517,-112.517,-93.0135,-99.3358,-99.3358,-98.1317,-6.86303,-13.1824,-13.1824,0,-3.54943,-102.9,-109.222,-109.222,-96.0402,-9.88687,-108.921,-102.9,-109.222,-109.222,-96.0402,-9.88687,-105.926,-108.921 0|1:160:21,0,9,1,90,3,17:21:786:0,9,1,90,3,17:0,343,36,3471,119,676:-278.68,-285.002,-349.365,-256.869,-321.232,-318.523,-282.065,-346.428,-318.295,-346.127,0,-64.3597,-36.2269,-61.4226,-37.267,-275.206,-339.569,-311.436,-336.632,-54.5632,-338.666,-229.346,-293.71,-265.576,-290.772,-8.70196,-283.913,-288.592 dDocent_Contig_4445 22 . G T 250.091 . AB=0.5;ABP=3.0103;AC=1;AF=0.166667;AN=6;AO=9;CIGAR=1X;DP=33;DPB=33;DPRA=2.4;EPP=22.5536;EPPR=55.1256;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=351;QR=946;RO=24;RPL=0;RPP=22.5536;RPPR=55.1256;RPR=9;RUN=1;SAF=9;SAP=22.5536;SAR=0;SRF=24;SRP=55.1256;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:18:9,9:9:353:9:351:-26.5319,0,-26.7077 0/0:8:8,0:8:312:0:0:0,-2.40824,-28.4427 0/0:7:7,0:7:281:0:0:0,-2.10721,-25.6628 dDocent_Contig_4446 14 . A C 45.9891 . AB=0.101124;ABP=126.003;AC=1;AF=0.166667;AN=6;AO=10;CIGAR=1X;DP=355;DPB=355;DPRA=0.292411;EPP=24.725;EPPR=749.997;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=6.93889e-18;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=406;QR=13801;RO=344;RPL=0;RPP=24.725;RPPR=749.997;RPR=10;RUN=1;SAF=10;SAP=24.725;SAR=0;SRF=344;SRP=749.997;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:224:223,0:223:8978:0:0:0,-67.1297,-807.207 0/0:42:41,1:41:1625:1:41:0,-8.54869,-142.376 0/1:89:80,9:80:3198:9:365:-6.42281,0,-261.097 dDocent_Contig_4448 24 . G A 1335.14 . AB=0.242798;ABP=142.637;AC=3;AF=0.5;AN=6;AO=59;CIGAR=1X;DP=243;DPB=243;DPRA=0;EPP=131.127;EPPR=402.561;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=2347;QR=7325;RO=184;RPL=0;RPP=131.127;RPPR=402.561;RPR=59;RUN=1;SAF=59;SAP=131.127;SAR=0;SRF=184;SRP=402.561;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:147:109,38:109:4341:38:1504:-91.3538,0,-346.382 0/1:22:16,6:16:645:6:238:-15.1719,0,-51.7604 0/1:74:59,15:59:2339:15:605:-32.5117,0,-188.398 dDocent_Contig_4449 22 . G A 110.044 . AB=0.157895;ABP=60.9543;AC=1;AF=0.166667;AN=6;AO=11;CIGAR=1X;DP=106;DPB=106;DPRA=2.61765;EPP=26.8965;EPPR=209.3;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=59.5895;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=0.978947;PAO=0;PQA=0;PQR=0;PRO=0;QA=398;QR=3766;RO=95;RPL=0;RPP=26.8965;RPPR=209.3;RPR=11;RUN=1;SAF=11;SAP=26.8965;SAR=0;SRF=95;SRP=209.3;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:57:48,9:48:1910:9:326:-12.5273,0,-154.947 0/0:32:30,2:30:1179:2:72:0,-2.79632,-99.0066 0/0:17:17,0:17:677:0:0:0,-5.11751,-61.2588 dDocent_Contig_4450 55 . T G 194.722 . AB=0.232558;ABP=29.7245;AC=2;AF=0.333333;AN=6;AO=13;CIGAR=1X;DP=114;DPB=114;DPRA=0;EPP=31.2394;EPPR=217.986;GTI=0;LEN=1;MEANALT=1.33333;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=0;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=513;QR=3954;RO=99;RPL=13;RPP=31.2394;RPPR=217.986;RPR=0;RUN=1;SAF=13;SAP=31.2394;SAR=0;SRF=99;SRP=217.986;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:71:66,3:66:2629:3:122:0,-9.73791,-225.397 0/1:19:13,6:13:520:6:230:-15.3443,0,-41.427 0/1:24:20,4:20:805:4:161:-7.65076,0,-65.5412 dDocent_Contig_4452 21 . G A 2091.15 . AB=0.298561;ABP=100.992;AC=3;AF=0.5;AN=6;AO=83;CIGAR=1X;DP=278;DPB=278;DPRA=0;EPP=183.243;EPPR=424.276;GTI=0;LEN=1;MEANALT=1.33333;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=3306;QR=7661;RO=194;RPL=0;RPP=183.243;RPPR=424.276;RPR=83;RUN=1;SAF=83;SAP=183.243;SAR=0;SRF=194;SRP=424.276;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:160:105,54:105:4149:54:2147:-145.171,0,-325.16 0/1:69:50,19:50:1972:19:754:-47.4077,0,-156.917 0/1:49:39,10:39:1540:10:405:-22.0596,0,-124.088 dDocent_Contig_4453 7 . A T 81.4337 . AB=0.208333;ABP=20.744;AC=1;AF=0.166667;AN=6;AO=11;CIGAR=1X;DP=238;DPB=238;DPRA=0;EPP=26.8965;EPPR=493.763;GTI=0;LEN=1;MEANALT=1.33333;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=406;QR=8646;RO=226;RPL=0;RPP=26.8965;RPPR=493.763;RPR=11;RUN=1;SAF=11;SAP=26.8965;SAR=0;SRF=226;SRP=493.763;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:149:144,4:144:5508:4:142:0,-31.7049,-482.597 0/1:24:19,5:19:720:5:187:-9.96728,0,-57.9039 0/0:65:63,2:63:2418:2:77:0,-12.2578,-210.516 dDocent_Contig_4454 14 . A G 39.665 . AB=0.166667;ABP=26.1727;AC=1;AF=0.166667;AN=6;AO=4;CIGAR=1X;DP=82;DPB=82;DPRA=0.827586;EPP=11.6962;EPPR=172.385;GTI=0;LEN=1;MEANALT=1;MQM=41;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=0;PAIREDR=0.923077;PAO=0;PQA=0;PQR=0;PRO=0;QA=147;QR=3112;RO=78;RPL=0;RPP=11.6962;RPPR=172.385;RPR=4;RUN=1;SAF=4;SAP=11.6962;SAR=0;SRF=78;SRP=172.385;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:53:53,0:53:2114:0:0:0,-15.9546,-190.436 0/0:5:5,0:5:203:0:0:0,-1.50515,-18.6531 0/1:24:20,4:20:795:4:147:-5.79031,0,-64.6453 dDocent_Contig_4455 26 . T C 221.749 . AB=0.149123;ABP=124.918;AC=2;AF=0.333333;AN=6;AO=18;CIGAR=1X3M1X;DP=148;DPB=148;DPRA=0;EPP=42.0968;EPPR=285.302;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=6.93889e-18;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=699;QR=5175;RO=130;RPL=0;RPP=42.0968;RPPR=285.302;RPR=18;RUN=1;SAF=18;SAP=42.0968;SAR=0;SRF=130;SRP=285.302;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|1:71:61,10:61:2437:10:404:-15.3473,0,-198.111 0|1:43:36,7:36:1433:7:255:-10.3504,0,-116.283 0|0:34:33,1:33:1305:1:40:0,-6.23934,-113.724 dDocent_Contig_4456 10 . A C 61.5947 . AB=0.134615;ABP=63.3104;AC=2;AF=0.333333;AN=6;AO=7;CIGAR=2X;DP=114;DPB=114;DPRA=0.419355;EPP=18.2106;EPPR=235.358;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=273;QR=4276;RO=107;RPL=0;RPP=18.2106;RPPR=235.358;RPR=7;RUN=1;SAF=7;SAP=18.2106;SAR=0;SRF=107;SRP=235.358;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|0:62:62,0:62:2470:0:0:0,-18.6639,-222.437 0|1:26:23,3:23:917:3:118:-3.17611,0,-75.0109 0|1:26:22,4:22:889:4:155:-6.49669,0,-72.4906 dDocent_Contig_4457 19 . C T 743.293 . AB=0.319149;ABP=29.7148;AC=2;AF=0.333333;AN=6;AO=34;CIGAR=1X;DP=147;DPB=147;DPRA=0;EPP=76.8404;EPPR=248.387;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=1333;QR=4489;RO=113;RPL=0;RPP=76.8404;RPPR=248.387;RPR=34;RUN=1;SAF=34;SAP=76.8404;SAR=0;SRF=113;SRP=248.387;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:64:39,25:39:1550:25:970:-68.3209,0,-120.466 0/1:30:25,5:25:978:5:202:-9.53118,0,-79.2839 0/0:53:49,4:49:1961:4:161:0,-1.07969,-161.809 dDocent_Contig_4459 140 . T G 2010.93 . AB=0.785714;ABP=72.4974;AC=3;AF=0.5;AN=6;AO=77;CIGAR=1X;DP=98;DPB=98;DPRA=0;EPP=170.214;EPPR=48.6112;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=2613;QR=711;RO=21;RPL=0;RPP=170.214;RPPR=48.6112;RPR=77;RUN=1;SAF=0;SAP=170.214;SAR=77;SRF=0;SRP=48.6112;SRR=21;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:65:10,55:10:348:55:1849:-147.122,0,-12.0891 0/1:16:5,11:5:156:11:384:-30.0792,0,-9.53097 0/1:17:6,11:6:207:11:380:-29.4152,0,-13.8507 dDocent_Contig_4462 34 . T C 2961.05 . AB=0.740157;ABP=66.6327;AC=3;AF=0.5;AN=6;AO=94;CIGAR=1X;DP=127;DPB=127;DPRA=0;EPP=207.129;EPPR=74.6689;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=6.93889e-18;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=3758;QR=1317;RO=33;RPL=0;RPP=207.129;RPPR=74.6689;RPR=94;RUN=1;SAF=94;SAP=207.129;SAR=0;SRF=33;SRP=74.6689;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:80:22,58:22:885:58:2323:-185.147,0,-55.8769 0/1:20:2,18:2:76:18:716:-58.747,0,-1.19366 0/1:27:9,18:9:356:18:719:-56.9057,0,-24.2729 dDocent_Contig_4464 22 . G T 55.4651 . AB=0.12766;ABP=59.6072;AC=1;AF=0.166667;AN=6;AO=20;CIGAR=1X;DP=370;DPB=370;DPRA=0;EPP=46.4397;EPPR=763.026;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=793;QR=13925;RO=350;RPL=0;RPP=46.4397;RPPR=763.026;RPR=20;RUN=1;SAF=20;SAP=46.4397;SAR=0;SRF=350;SRP=763.026;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:229:220,9:220:8828:9:358:0,-36.354,-761.406 0/1:47:41,6:41:1574:6:235:-7.37041,0,-127.746 0/0:94:89,5:89:3523:5:200:0,-9.91749,-298.735 dDocent_Contig_4465 8 . T C 821.438 . AB=0.268116;ABP=67.4621;AC=3;AF=0.5;AN=6;AO=37;CIGAR=1X;DP=138;DPB=138;DPRA=0;EPP=83.3548;EPPR=222.329;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=6.93889e-18;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=1424;QR=3859;RO=101;RPL=0;RPP=83.3548;RPPR=222.329;RPR=37;RUN=1;SAF=37;SAP=83.3548;SAR=0;SRF=101;SRP=222.329;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:48:38,10:38:1440:10:383:-20.3753,0,-115.421 0/1:49:35,14:35:1354:14:539:-34.105,0,-107.394 0/1:41:28,13:28:1065:13:502:-33.1864,0,-83.815 dDocent_Contig_4466 98 . N G 181.501 . AB=0;ABP=0;AC=6;AF=1;AN=6;AO=6;CIGAR=1X;DP=6;DPB=6;DPRA=0;EPP=16.0391;EPPR=0;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=0;NS=3;NUMALT=1;ODDS=1.69407e-21;PAIRED=1;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=186;QR=0;RO=0;RPL=6;RPP=16.0391;RPPR=0;RPR=0;RUN=1;SAF=6;SAP=16.0391;SAR=0;SRF=0;SRP=0;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 1/1:3:0,3:0:0:3:101:-9.42373,-0.90309,0 1/1:2:0,2:0:0:2:50:-4.74932,-0.60206,0 1/1:1:0,1:0:0:1:35:-3.49863,-0.30103,0 dDocent_Contig_4467 19 . A C 81.7943 . AB=0.108911;ABP=137.19;AC=1;AF=0.166667;AN=6;AO=15;CIGAR=1X;DP=325;DPB=325;DPRA=0.423295;EPP=35.5824;EPPR=676.167;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=600;QR=12048;RO=310;RPL=0;RPP=35.5824;RPPR=676.167;RPR=15;RUN=1;SAF=15;SAP=35.5824;SAR=0;SRF=310;SRP=676.167;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:176:176,0:176:6867:0:0:0,-52.9813,-617.766 0/0:48:44,4:44:1714:4:155:0,-0.124977,-140.175 0/1:101:90,11:90:3467:11:445:-10.0023,0,-281.686 dDocent_Contig_4468 27 . T C 4229.97 . AB=0.879121;ABP=116.619;AC=4;AF=0.666667;AN=6;AO=127;CIGAR=1X;DP=138;DPB=138;DPRA=0;EPP=278.787;EPPR=26.8965;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=6.93889e-18;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=5035;QR=444;RO=11;RPL=0;RPP=278.787;RPPR=26.8965;RPR=127;RUN=1;SAF=127;SAP=278.787;SAR=0;SRF=11;SRP=26.8965;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:55:5,50:5:205:50:1965:-160.5,0,-2.27836 0/1:36:6,30:6:239:30:1200:-97.4375,0,-11.0477 1/1:47:0,47:0:0:47:1870:-168.512,-14.1484,0 dDocent_Contig_4469 52 . T G 736.513 . AB=0.218935;ABP=118.972;AC=3;AF=0.5;AN=6;AO=37;CIGAR=1X;DP=169;DPB=169;DPRA=0;EPP=83.3548;EPPR=289.645;GTI=0;LEN=1;MEANALT=1;MQM=58.3784;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=0.945946;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=1454;QR=5250;RO=132;RPL=37;RPP=83.3548;RPPR=289.645;RPR=0;RUN=1;SAF=37;SAP=83.3548;SAR=0;SRF=132;SRP=289.645;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:104:84,20:84:3352:20:792:-40.2906,0,-270.427 0/1:17:13,4:13:500:4:136:-7.45144,0,-40.2138 0/1:48:35,13:35:1398:13:526:-31.4321,0,-111.623 dDocent_Contig_4470 122 . A C 766.204 . AB=0.540984;ABP=3.90025;AC=3;AF=0.5;AN=6;AO=33;CIGAR=1X;DP=61;DPB=61;DPRA=0;EPP=74.6689;EPPR=63.8115;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=3.46945e-18;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=1106;QR=966;RO=28;RPL=0;RPP=74.6689;RPPR=63.8115;RPR=33;RUN=1;SAF=0;SAP=74.6689;SAR=33;SRF=0;SRP=63.8115;SRR=28;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:30:17,13:17:588:13:428:-29.8042,0,-44.2154 0/1:16:4,12:4:134:12:417:-33.0468,0,-7.5744 0/1:15:7,8:7:244:8:261:-19.2923,0,-17.7846 dDocent_Contig_4472 58 . G A 1299.63 . AB=0.311377;ABP=54.6185;AC=3;AF=0.5;AN=6;AO=52;CIGAR=1X;DP=167;DPB=167;DPRA=0;EPP=115.927;EPPR=252.73;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=2053;QR=4504;RO=115;RPL=52;RPP=115.927;RPPR=252.73;RPR=0;RUN=1;SAF=52;SAP=115.927;SAR=0;SRF=115;SRP=252.73;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:68:46,22:46:1826:22:875:-58.5912,0,-144.083 0/1:39:23,16:23:884:16:634:-45.6547,0,-68.118 0/1:60:46,14:46:1794:14:544:-31.2402,0,-143.605 dDocent_Contig_4473 10 . A G 32.4675 . AB=0.222222;ABP=9.04217;AC=1;AF=0.166667;AN=6;AO=2;CIGAR=1X;DP=36;DPB=36;DPRA=0.666667;EPP=7.35324;EPPR=76.8404;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=0;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=82;QR=1353;RO=34;RPL=0;RPP=7.35324;RPPR=76.8404;RPR=2;RUN=1;SAF=2;SAP=7.35324;SAR=0;SRF=34;SRP=76.8404;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:18:18,0:18:716:0:0:0,-5.41854,-64.7652 0/0:9:9,0:9:363:0:0:0,-2.70927,-33.0341 0/1:9:7,2:7:274:2:82:-5.07041,0,-22.3174 dDocent_Contig_4474 10 . G A 890.916 . AB=0.287129;ABP=42.7633;AC=3;AF=0.5;AN=6;AO=29;CIGAR=1X2M1X;DP=101;DPB=101;DPRA=0;EPP=65.983;EPPR=92.0407;GTI=0;LEN=1;MEANALT=2.33333;MQM=60;MQMR=60;NS=3;NUMALT=2;ODDS=2.77556e-17;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=1119;QR=1574;RO=41;RPL=0;RPP=65.983;RPPR=92.0407;RPR=29;RUN=1;SAF=29;SAP=65.983;SAR=0;SRF=41;SRP=92.0407;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|1:35:11,13,11:11:423:13,11:523,420:-39.8022,0,-30.8143,-8.67033,-0.276615,-40.0773 0|1:21:13,5,3:13:492:5,3:201,119:-12.2225,0,-38.8132,-6.33831,-30.5189,-45.7582 0|1:45:17,11,15:17:659:11,15:433,580:-42.5193,-12.0138,-62.8455,0,-18.5177,-49.6246 dDocent_Contig_4475 129 . C G 114.408 . AB=0.177778;ABP=43.5927;AC=1;AF=0.166667;AN=6;AO=12;CIGAR=1X;DP=100;DPB=100;DPRA=7.83333;EPP=29.068;EPPR=191.928;GTI=0;LEN=1;MEANALT=1.5;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=450;QR=3325;RO=87;RPL=0;RPP=29.068;RPPR=191.928;RPR=12;RUN=1;SAF=0;SAP=29.068;SAR=12;SRF=0;SRP=191.928;SRR=87;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:49:45,4:45:1721:4:155:0,-0.42503,-140.823 0/0:6:6,0:6:221:0:0:0,-1.80618,-20.2453 0/1:45:36,8:36:1383:8:295:-13.2641,0,-111.119 dDocent_Contig_4476 19 . C T 325.264 . AB=0.241935;ABP=38.8746;AC=1;AF=0.166667;AN=6;AO=15;CIGAR=1X;DP=114;DPB=114;DPRA=2.38462;EPP=35.5824;EPPR=217.986;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=582;QR=3950;RO=99;RPL=0;RPP=35.5824;RPPR=217.986;RPR=15;RUN=1;SAF=15;SAP=35.5824;SAR=0;SRF=99;SRP=217.986;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:62:47,15:47:1879:15:582:-34.0492,0,-150.645 0/0:19:19,0:19:776:0:0:0,-5.71957,-70.158 0/0:33:33,0:33:1295:0:0:0,-9.93399,-116.807 dDocent_Contig_4477 1 . N G 104.487 . AB=0;ABP=0;AC=4;AF=1;AN=4;AO=3;CIGAR=1X;DP=3;DPB=3;DPRA=0;EPP=9.52472;EPPR=0;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=0;NS=2;NUMALT=1;ODDS=0;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=105;QR=0;RO=0;RPL=0;RPP=9.52472;RPPR=0;RPR=3;RUN=1;SAF=0;SAP=9.52472;SAR=3;SRF=0;SRP=0;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 1/1:2:0,2:0:0:2:70:-6.6474,-0.60206,0 1/1:1:0,1:0:0:1:35:-3.49863,-0.30103,0 ./.:.:.:.:.:.:.:. dDocent_Contig_4478 11 . A G 3884.52 . AB=0.436275;ABP=10.206;AC=3;AF=0.5;AN=6;AO=89;CIGAR=1X1M1X5M1I3M;DP=204;DPB=221.364;DPRA=0;EPP=196.271;EPPR=29.068;GTI=0;LEN=1;MEANALT=4.33333;MQM=60;MQMR=60;NS=3;NUMALT=4;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=3309;QR=461;RO=12;RPL=0;RPP=196.271;RPPR=29.068;RPR=89;RUN=1;SAF=89;SAP=196.271;SAR=0;SRF=12;SRP=29.068;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 1|0:96:6,17,40,8,24:6:229:17,40,8,24:674,1497,316,899:-175.598,-121.921,-135.591,-54.8362,-18.1377,-61.5828,-151.421,-114.725,-47.6401,-167.801,-103.777,-67.0804,0,-96.5816,-115.34 1|0:38:1,0,16,12,9:1:40:0,16,12,9:0,586,470,336:-82.8977,-83.1987,-86.4944,-35.3189,-38.6147,-33.7983,-44.585,-47.8813,0,-44.2689,-55.6899,-58.9858,-11.1126,-20.3698,-56.2765 1|0:70:5,6,33,8,17:5:192:6,33,8,17:231,1226,315,640:-135.48,-118.021,-131.976,-36.6738,-33.4715,-42.5009,-111.075,-107.872,-26.5243,-124.428,-84.5445,-81.3422,0,-74.3957,-95.1886 dDocent_Contig_4479 14 . A T 272.507 . AB=0.236364;ABP=36.2141;AC=2;AF=0.333333;AN=6;AO=15;CIGAR=1X3M1X;DP=95;DPB=95;DPRA=0;EPP=35.5824;EPPR=174.557;GTI=0;LEN=1;MEANALT=1.33333;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=599;QR=3101;RO=79;RPL=0;RPP=35.5824;RPPR=174.557;RPR=15;RUN=1;SAF=15;SAP=35.5824;SAR=0;SRF=79;SRP=174.557;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|0:40:38,2:38:1483:2:81:0,-4.35547,-126.04 0|1:32:23,9:23:905:9:359:-23.0398,0,-72.1283 0|1:23:18,4:18:713:4:159:-7.73373,0,-57.552 dDocent_Contig_4480 17 . C T 298.311 . AB=0.168;ABP=122.684;AC=2;AF=0.333333;AN=6;AO=22;CIGAR=1X;DP=162;DPB=162;DPRA=0;EPP=50.7827;EPPR=307.016;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=0;PAIREDR=0.964286;PAO=0;PQA=0;PQR=0;PRO=0;QA=818;QR=5532;RO=140;RPL=0;RPP=50.7827;RPPR=307.016;RPR=22;RUN=1;SAF=22;SAP=50.7827;SAR=0;SRF=140;SRP=307.016;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:95:78,17:78:3071:17:635:-28.8876,0,-247.887 0/1:30:26,4:26:1045:4:146:-4.46589,0,-85.3106 0/0:37:36,1:36:1416:1:37:0,-7.44028,-123.996 dDocent_Contig_4481 12 . T C 5733.78 . AB=0.56305;ABP=14.7846;AC=3;AF=0.5;AN=6;AO=192;CIGAR=1X;DP=341;DPB=341;DPRA=0;EPP=419.933;EPPR=180.543;GTI=0;LEN=1;MEANALT=1.33333;MQM=59.125;MQMR=44.8919;NS=3;NUMALT=1;ODDS=0;PAIRED=0.942708;PAIREDR=0.527027;PAO=0;PQA=0;PQR=0;PRO=0;QA=7596;QR=5543;RO=148;RPL=0;RPP=419.933;RPPR=324.388;RPR=192;RUN=1;SAF=192;SAP=419.933;SAR=0;SRF=129;SRP=180.543;SRR=19;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:148:59,89:59:2240:89:3523:-272.525,0,-113.324 0/1:75:39,36:39:1435:36:1401:-101.495,0,-81.6236 0/1:118:50,67:50:1868:67:2672:-204.88,0,-114.646 dDocent_Contig_4482 7 . G A 4537.73 . AB=0.382222;ABP=57.2296;AC=3;AF=0.5;AN=6;AO=172;CIGAR=1X;DP=450;DPB=450;DPRA=0;EPP=376.504;EPPR=589.308;GTI=0;LEN=1;MEANALT=2;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=6578;QR=9030;RO=270;RPL=0;RPP=376.504;RPPR=589.308;RPR=172;RUN=1;SAF=172;SAP=376.504;SAR=0;SRF=270;SRP=589.308;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:261:167,89:167:5489:89:3423:-230.973,0,-416.856 0/1:70:32,38:32:1138:38:1443:-109.078,0,-81.6369 0/1:119:71,45:71:2403:45:1712:-119.246,0,-181.402 dDocent_Contig_4483 175 . T C 1597.51 . AB=0.741379;ABP=32.3626;AC=4;AF=0.666667;AN=6;AO=53;CIGAR=1X;DP=68;DPB=68;DPRA=0;EPP=118.098;EPPR=35.5824;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=1997;QR=574;RO=15;RPL=53;RPP=118.098;RPPR=35.5824;RPR=0;RUN=1;SAF=0;SAP=118.098;SAR=53;SRF=0;SRP=35.5824;SRR=15;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:37:6,31:6:228:31:1155:-93.1099,0,-9.74588 0/1:21:9,12:9:346:12:461:-35.5189,0,-25.1776 1/1:10:0,10:0:0:10:381:-34.6449,-3.0103,0 dDocent_Contig_4484 47 . G A 381.046 . AB=0.296296;ABP=22.4731;AC=2;AF=0.333333;AN=6;AO=16;CIGAR=1X;DP=60;DPB=60;DPRA=4.5;EPP=37.7539;EPPR=98.5551;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=635;QR=1778;RO=44;RPL=0;RPP=37.7539;RPPR=98.5551;RPR=16;RUN=1;SAF=16;SAP=37.7539;SAR=0;SRF=44;SRP=98.5551;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:24:21,3:21:854:3:120:-3.96259,0,-69.9452 0/0:6:6,0:6:237:0:0:0,-1.80618,-21.7017 0/1:30:17,13:17:687:13:515:-37.6632,0,-53.1286 dDocent_Contig_4485 17 . C T 59.7689 . AB=0.142857;ABP=18.5208;AC=0;AF=0;AN=6;AO=2;CIGAR=2X1M1X1M2X2M;DP=37;DPB=37;DPRA=1.55556;EPP=7.35324;EPPR=65.983;GTI=0;LEN=1;MEANALT=2;MQM=47;MQMR=60;NS=3;NUMALT=3;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=79;QR=1157;RO=29;RPL=0;RPP=7.35324;RPPR=65.983;RPR=2;RUN=1;SAF=2;SAP=7.35324;SAR=0;SRF=29;SRP=65.983;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|0:9:9,0,0,0:9:362:0,0,0:0,0,0:0,-2.70927,-32.9446,-2.70927,-32.9446,-32.9446,-2.70927,-32.9446,-32.9446,-32.9446 0|0:14:11,3,0,0:11:438:3,0,0:96,0,0:-4.45062,0,-35.5622,-7.76195,-36.4653,-43.8988,-7.76195,-36.4653,-43.8988,-43.8988 0|0:14:9,0,2,3:9:357:0,2,3:0,79,120:-5.04202,-7.75129,-37.1683,-1.34561,-30.7875,-30.1854,0,-29.393,-23.0152,-28.49 dDocent_Contig_4487 10 . T A 2186.03 . AB=0.0857143;ABP=107.365;AC=3;AF=0.5;AN=6;AO=6;CIGAR=3X;DP=111;DPB=111;DPRA=0;EPP=16.0391;EPPR=74.6689;GTI=0;LEN=1;MEANALT=2;MQM=60;MQMR=60;NS=3;NUMALT=2;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=240;QR=1286;RO=33;RPL=0;RPP=16.0391;RPPR=74.6689;RPR=6;RUN=1;SAF=6;SAP=16.0391;SAR=0;SRF=33;SRP=74.6689;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|1:45:5,36,4:5:195:36,4:1407,160:-114.16,0,-5.18594,-102.484,-2.83828,-117.309 0|1:25:12,11,2:12:465:11,2:438,80:-32.4536,0,-34.8774,-29.4755,-31.5968,-67.0673 0|1:41:16,25,0:16:626:25,0:995,0:-77.5118,0,-44.3358,-82.3283,-51.8615,-133.796 dDocent_Contig_4488 15 . G A 71.4885 . AB=0.210526;ABP=16.8392;AC=1;AF=0.166667;AN=6;AO=5;CIGAR=3X;DP=83;DPB=83;DPRA=2.09375;EPP=13.8677;EPPR=170.214;GTI=0;LEN=1;MEANALT=1.5;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=200;QR=3026;RO=77;RPL=0;RPP=13.8677;RPPR=170.214;RPR=5;RUN=1;SAF=5;SAP=13.8677;SAR=0;SRF=77;SRP=170.214;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|0:48:46,1:46:1820:1:41:0,-10.4633,-159.926 0|1:19:15,4:15:588:4:159:-8.97276,0,-47.5418 0|0:16:16,0:16:618:0:0:0,-4.81648,-55.9441 dDocent_Contig_4489 9 . A T 1199.49 . AB=0.461538;ABP=4.17955;AC=3;AF=0.5;AN=6;AO=42;CIGAR=1X2M1X;DP=91;DPB=91;DPRA=0;EPP=94.2121;EPPR=109.412;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=1668;QR=1901;RO=49;RPL=0;RPP=94.2121;RPPR=109.412;RPR=42;RUN=1;SAF=42;SAP=94.2121;SAR=0;SRF=49;SRP=109.412;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|1:62:26,36:26:1011:36:1431:-110.389,0,-72.6316 0|1:12:11,1:11:417:1:39:-0.284205,0,-34.2622 0|1:17:12,5:12:473:5:198:-13.0801,0,-37.8049 dDocent_Contig_4490 14 . G A 90.1107 . AB=0.181818;ABP=32.0291;AC=2;AF=0.333333;AN=6;AO=6;CIGAR=1X;DP=41;DPB=41;DPRA=2.0625;EPP=16.0391;EPPR=79.0118;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=241;QR=1358;RO=35;RPL=0;RPP=16.0391;RPPR=79.0118;RPR=6;RUN=1;SAF=6;SAP=16.0391;SAR=0;SRF=35;SRP=79.0118;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:19:16,3:16:607:3:121:-5.56063,0,-49.243 0/1:14:11,3:11:436:3:120:-6.97327,0,-35.3792 0/0:8:8,0:8:315:0:0:0,-2.40824,-28.7157 dDocent_Contig_4492 8 . T G 149.455 . AB=0.166667;ABP=72.4974;AC=2;AF=0.333333;AN=6;AO=14;CIGAR=1M1I1X2M1X;DP=97;DPB=100;DPRA=0;EPP=33.4109;EPPR=181.071;GTI=0;LEN=1;MEANALT=1.33333;MQM=42.3571;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=0;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=549;QR=3142;RO=82;RPL=0;RPP=33.4109;RPPR=181.071;RPR=14;RUN=1;SAF=14;SAP=33.4109;SAR=0;SRF=82;SRP=181.071;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|1:55:46,9:46:1758:9:355:-14.7139,0,-141.917 0|1:17:13,3:13:503:3:115:-3.75118,0,-40.4166 0|0:25:23,2:23:881:2:79:0,-0.272353,-72.3556 dDocent_Contig_4493 30 . G T 143.415 . AB=0.315789;ABP=8.61041;AC=1;AF=0.166667;AN=6;AO=7;CIGAR=1X1M2X;DP=49;DPB=49;DPRA=2.22222;EPP=18.2106;EPPR=94.2121;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=280;QR=1620;RO=42;RPL=0;RPP=18.2106;RPPR=94.2121;RPR=7;RUN=1;SAF=7;SAP=18.2106;SAR=0;SRF=42;SRP=94.2121;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|0:9:9,0:9:352:0:0:0,-2.70927,-32.0415 0|1:19:13,6:13:481:6:239:-16.1654,0,-37.9053 0|0:21:20,1:20:787:1:41:0,-2.22706,-67.0593 dDocent_Contig_4494 51 . A C 2990.59 . AB=0.364238;ABP=51.3579;AC=3;AF=0.5;AN=6;AO=110;CIGAR=1X;DP=302;DPB=302;DPRA=0;EPP=241.872;EPPR=419.933;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=1.38778e-17;PAIRED=1;PAIREDR=0.979167;PAO=0;PQA=0;PQR=0;PRO=0;QA=4386;QR=7586;RO=192;RPL=110;RPP=241.872;RPPR=419.933;RPR=0;RUN=1;SAF=110;SAP=241.872;SAR=0;SRF=192;SRP=419.933;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:174:103,71:103:4062:71:2816:-201.175,0,-313.196 0/1:46:28,18:28:1099:18:720:-51.2795,0,-85.348 0/1:82:61,21:61:2425:21:850:-52.127,0,-193.723 dDocent_Contig_4495 7 . C A 4324.87 . AB=0.8125;ABP=152.299;AC=3;AF=0.5;AN=6;AO=143;CIGAR=1X;DP=176;DPB=176;DPRA=0;EPP=313.531;EPPR=74.6689;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=51.8182;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=5447;QR=1280;RO=33;RPL=0;RPP=313.531;RPPR=74.6689;RPR=143;RUN=1;SAF=143;SAP=313.531;SAR=0;SRF=33;SRP=74.6689;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:110:15,95:15:578:95:3622:-292.992,0,-18.2802 0/1:17:4,13:4:156:13:503:-40.5014,0,-9.29978 0/1:49:14,35:14:546:35:1322:-104.517,0,-33.4805 dDocent_Contig_4496 111 . C G 259.545 . AB=0.304348;ABP=18.305;AC=2;AF=0.333333;AN=6;AO=17;CIGAR=1X;DP=85;DPB=85;DPRA=0;EPP=39.9253;EPPR=150.67;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=563;QR=2350;RO=68;RPL=0;RPP=39.9253;RPPR=150.67;RPR=17;RUN=1;SAF=0;SAP=39.9253;SAR=17;SRF=0;SRP=150.67;SRR=68;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:39:36,3:36:1235:3:89:0,-3.4352,-103.147 0/1:11:5,6:5:174:6:210:-15.9311,0,-12.6906 0/1:35:27,8:27:941:8:264:-13.5462,0,-74.47 dDocent_Contig_4497 7 . A T 441.513 . AB=0.127329;ABP=391.448;AC=2;AF=0.333333;AN=6;AO=43;CIGAR=4X;DP=366;DPB=366;DPRA=0;EPP=96.3836;EPPR=704.396;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=1664;QR=12430;RO=323;RPL=0;RPP=96.3836;RPPR=704.396;RPR=43;RUN=1;SAF=43;SAP=96.3836;SAR=0;SRF=323;SRP=704.396;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|1:220:188,32:188:7246:32:1240:-45.6652,0,-585.761 0|0:44:42,2:42:1601:2:78:0,-5.84185,-136.954 0|1:102:93,9:93:3583:9:346:-0.794292,0,-291.883 dDocent_Contig_4498 17 . C A 2418.92 . AB=0.303226;ABP=107.269;AC=3;AF=0.5;AN=6;AO=94;CIGAR=1X;DP=310;DPB=310;DPRA=0;EPP=207.129;EPPR=472.048;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=3777;QR=8628;RO=216;RPL=0;RPP=207.129;RPPR=472.048;RPR=94;RUN=1;SAF=94;SAP=207.129;SAR=0;SRF=216;SRP=472.048;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:175:124,51:124:4945:51:2049:-131.908,0,-392.24 0/1:45:35,10:35:1403:10:407:-23.4437,0,-112.975 0/1:90:57,33:57:2280:33:1321:-92.063,0,-178.266 dDocent_Contig_4499 31 . G A 353.349 . AB=0.1875;ABP=84.4405;AC=1;AF=0.166667;AN=6;AO=23;CIGAR=1X;DP=192;DPB=192;DPRA=0;EPP=52.9542;EPPR=369.989;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=59.9645;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=917;QR=6750;RO=169;RPL=0;RPP=52.9542;RPPR=369.989;RPR=23;RUN=1;SAF=23;SAP=52.9542;SAR=0;SRF=169;SRP=369.989;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:96:78,18:78:3126:18:727:-36.8575,0,-252.497 0/0:16:15,1:15:588:1:41:0,-0.721913,-49.1608 0/0:80:76,4:76:3036:4:149:0,-10.3106,-259.554 dDocent_Contig_4501 19 . G A 56.7841 . AB=0.147059;ABP=39.7976;AC=1;AF=0.166667;AN=6;AO=5;CIGAR=1X;DP=82;DPB=82;DPRA=1.41667;EPP=13.8677;EPPR=161.641;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=51.8961;NS=3;NUMALT=1;ODDS=0;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=193;QR=3016;RO=77;RPL=0;RPP=13.8677;RPPR=170.214;RPR=5;RUN=1;SAF=5;SAP=13.8677;SAR=0;SRF=76;SRP=161.641;SRR=1;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:34:34,0:34:1336:0:0:0,-10.235,-115.806 0/1:34:29,5:29:1138:5:193:-7.50232,0,-87.3673 0/0:14:14,0:14:542:0:0:0,-4.21442,-41.503 dDocent_Contig_4502 8 . T A 80.863 . AB=0.128571;ABP=86.8912;AC=1;AF=0.166667;AN=6;AO=12;CIGAR=1X;DP=166;DPB=166;DPRA=0;EPP=29.068;EPPR=337.417;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=6.93889e-18;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=454;QR=5892;RO=154;RPL=0;RPP=29.068;RPPR=337.417;RPR=12;RUN=1;SAF=12;SAP=29.068;SAR=0;SRF=154;SRP=337.417;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:70:61,9:61:2348:9:337:-9.60918,0,-190.458 0/0:39:37,2:37:1401:2:78:0,-4.3367,-118.966 0/0:57:56,1:56:2143:1:39:0,-13.2621,-189.201 dDocent_Contig_4503 17 . T A 4573.33 . AB=0.590551;ABP=21.1002;AC=3;AF=0.5;AN=6;AO=150;CIGAR=1X;DP=254;DPB=254;DPRA=0;EPP=328.731;EPPR=228.843;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=5986;QR=4145;RO=104;RPL=0;RPP=328.731;RPPR=228.843;RPR=150;RUN=1;SAF=150;SAP=328.731;SAR=0;SRF=104;SRP=228.843;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:137:45,92:45:1779:92:3665:-288.627,0,-119.086 0/1:36:10,26:10:397:26:1038:-82.8769,0,-25.248 0/1:81:49,32:49:1969:32:1283:-91.3519,0,-153.018 dDocent_Contig_4504 130 . G A 507.183 . AB=0.434783;ABP=4.70971;AC=1;AF=0.166667;AN=6;AO=20;CIGAR=1X;DP=132;DPB=132;DPRA=1.06977;EPP=46.4397;EPPR=246.215;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=3.46945e-18;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=734;QR=4101;RO=112;RPL=0;RPP=46.4397;RPPR=246.215;RPR=20;RUN=1;SAF=0;SAP=46.4397;SAR=20;SRF=0;SRP=246.215;SRR=112;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:66:66,0:66:2412:0:0:0,-19.868,-217.285 0/0:20:20,0:20:743:0:0:0,-6.0206,-67.1933 0/1:46:26,20:26:946:20:734:-52.5422,0,-71.6003 dDocent_Contig_4505 8 . T G 2782 . AB=0.625;ABP=23.6393;AC=3;AF=0.5;AN=6;AO=95;CIGAR=2X;DP=152;DPB=152;DPRA=0;EPP=209.3;EPPR=98.5551;GTI=0;LEN=1;MEANALT=2;MQM=60;MQMR=60;NS=3;NUMALT=2;ODDS=1.38778e-17;PAIRED=0.957895;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=3620;QR=1686;RO=44;RPL=0;RPP=209.3;RPPR=98.5551;RPR=95;RUN=1;SAF=95;SAP=209.3;SAR=0;SRF=44;SRP=98.5551;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|1:82:26,50,6:26:1001:50,6:1893,233:-147.354,0,-67.1358,-136.034,-63.0408,-216.42 0|1:22:10,11,1:10:375:11,1:425,35:-31.9299,0,-27.4269,-32.0955,-27.8927,-62.5047 0|1:48:8,34,6:8:310:34,6:1302,234:-104.439,0,-15.2319,-87.6113,-6.23054,-111.274 dDocent_Contig_4507 28 . C G 44.227 . AB=0.16;ABP=28.1125;AC=1;AF=0.166667;AN=6;AO=5;CIGAR=1X;DP=135;DPB=135;DPRA=2.2;EPP=13.8677;EPPR=280.959;GTI=0;LEN=1;MEANALT=1.5;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=0.5;PAO=0;PQA=0;PQR=0;PRO=0;QA=190;QR=5146;RO=128;RPL=0;RPP=13.8677;RPPR=280.959;RPR=5;RUN=1;SAF=5;SAP=13.8677;SAR=0;SRF=128;SRP=280.959;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:85:82,1:82:3315:1:41:0,-21.2938,-294.309 0/0:25:25,0:25:994:0:0:0,-7.52575,-89.7553 0/1:25:21,4:21:837:4:149:-6.2466,0,-68.1191 dDocent_Contig_4508 74 . A T 176.459 . AB=0.236842;ABP=25.8679;AC=2;AF=0.333333;AN=6;AO=9;CIGAR=1X;DP=56;DPB=56;DPRA=1.05556;EPP=22.5536;EPPR=105.07;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=3.46945e-18;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=354;QR=1827;RO=47;RPL=9;RPP=22.5536;RPPR=105.07;RPR=0;RUN=1;SAF=9;SAP=22.5536;SAR=0;SRF=47;SRP=105.07;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:18:18,0:18:717:0:0:0,-5.41854,-64.8588 0/1:20:14,6:14:542:6:240:-15.9552,0,-43.0998 0/1:18:15,3:15:568:3:114:-5.21344,0,-46.0402 dDocent_Contig_4509 29 . T C 148.289 . AB=0;ABP=0;AC=2;AF=0.5;AN=4;AO=4;CIGAR=1X;DP=5;DPB=5;DPRA=4;EPP=11.6962;EPPR=5.18177;GTI=0;LEN=1;MEANALT=1;MQM=55.5;MQMR=60;NS=2;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=158;QR=41;RO=1;RPL=0;RPP=11.6962;RPPR=5.18177;RPR=4;RUN=1;SAF=4;SAP=11.6962;SAR=0;SRF=1;SRP=5.18177;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 1/1:4:0,4:0:0:4:158:-14.5266,-1.20412,0 ./.:.:.:.:.:.:.:. 0/0:1:1,0:1:41:0:0:0,-0.30103,-4.09457 dDocent_Contig_4512 8 . T A 670.844 . AB=0.252101;ABP=66.5304;AC=1;AF=0.166667;AN=6;AO=32;CIGAR=1X;DP=181;DPB=181;DPRA=3.43478;EPP=72.4974;EPPR=326.56;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=1229;QR=5735;RO=149;RPL=0;RPP=72.4974;RPPR=326.56;RPR=32;RUN=1;SAF=32;SAP=72.4974;SAR=0;SRF=149;SRP=326.56;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:119:89,30:89:3434:30:1157:-68.6073,0,-273.365 0/0:23:23,0:23:865:0:0:0,-6.92369,-78.1635 0/0:39:37,2:37:1436:2:72:0,-4.90353,-122.681 dDocent_Contig_4513 13 . G T 235.436 . AB=0.206897;ABP=46.29;AC=1;AF=0.166667;AN=6;AO=12;CIGAR=1X;DP=165;DPB=165;DPRA=1.08411;EPP=29.068;EPPR=335.246;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=472;QR=6064;RO=153;RPL=0;RPP=29.068;RPPR=335.246;RPR=12;RUN=1;SAF=12;SAP=29.068;SAR=0;SRF=153;SRP=335.246;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:92:92,0:92:3640:0:0:0,-27.6948,-327.636 0/0:15:15,0:15:597:0:0:0,-4.51545,-54.0646 0/1:58:46,12:46:1827:12:472:-25.3675,0,-147.187 dDocent_Contig_4514 8 . T A 904.891 . AB=0.418605;ABP=7.95924;AC=3;AF=0.5;AN=6;AO=36;CIGAR=1X;DP=86;DPB=86;DPRA=0;EPP=81.1833;EPPR=111.584;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=0.972222;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=1343;QR=1939;RO=50;RPL=0;RPP=81.1833;RPPR=111.584;RPR=36;RUN=1;SAF=36;SAP=81.1833;SAR=0;SRF=50;SRP=111.584;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:30:15,15:15:583:15:561:-41.7944,0,-43.7822 0/1:27:17,10:17:655:10:375:-25.9731,0,-51.1591 0/1:29:18,11:18:701:11:407:-28.2445,0,-54.6942 dDocent_Contig_4515 32 . G A 239.728 . AB=0.142857;ABP=142.605;AC=3;AF=0.5;AN=6;AO=18;CIGAR=1X;DP=126;DPB=126;DPRA=0;EPP=42.0968;EPPR=237.529;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=733;QR=4296;RO=108;RPL=0;RPP=42.0968;RPPR=237.529;RPR=18;RUN=1;SAF=18;SAP=42.0968;SAR=0;SRF=108;SRP=237.529;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:81:70,11:70:2783:11:448:-16.2925,0,-226.208 0/1:25:20,5:20:799:5:203:-11.1271,0,-64.7007 0/1:20:18,2:18:714:2:82:-1.75908,0,-58.563 dDocent_Contig_4517 183 . C G 1884.4 . AB=0.370558;ABP=31.6803;AC=3;AF=0.5;AN=6;AO=73;CIGAR=1X2M1X1M1X;DP=197;DPB=197;DPRA=0;EPP=161.528;EPPR=257.073;GTI=0;LEN=1;MEANALT=1.66667;MQM=60;MQMR=60;NS=3;NUMALT=2;ODDS=1.38778e-17;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=2789;QR=4433;RO=117;RPL=73;RPP=161.528;RPPR=257.073;RPR=0;RUN=1;SAF=0;SAP=161.528;SAR=73;SRF=0;SRP=257.073;SRR=117;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|1:136:89,46,1:89:3378:46,1:1760,38:-117.626,0,-263.127,-141.301,-273.857,-417.972 0|1:15:8,7,0:8:301:7,0:259,0:-19.1459,0,-22.9306,-21.5541,-25.0378,-46.2192 0|1:46:20,20,6:20:754:20,6:770,236:-57.1909,0,-55.7487,-43.7973,-42.3533,-103.769 dDocent_Contig_4518 26 . A G 2537.12 . AB=0.784314;ABP=74.6263;AC=3;AF=0.5;AN=6;AO=80;CIGAR=1X;DP=102;DPB=102;DPRA=0;EPP=176.728;EPPR=50.7827;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=3212;QR=881;RO=22;RPL=0;RPP=176.728;RPPR=50.7827;RPR=80;RUN=1;SAF=80;SAP=176.728;SAR=0;SRF=22;SRP=50.7827;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:75:13,62:13:521:62:2481:-200.846,0,-24.6594 0/1:8:2,6:2:81:6:241:-19.6576,0,-5.27749 0/1:19:7,12:7:279:12:490:-38.7316,0,-19.7612 dDocent_Contig_4519 9 . T A 6250.72 . AB=0.0424528;ABP=388.508;AC=0;AF=0;AN=6;AO=9;CIGAR=1X3M1X;DP=268;DPB=268;DPRA=0;EPP=22.5536;EPPR=137.642;GTI=0;LEN=1;MEANALT=2.5;MQM=60;MQMR=60;NS=3;NUMALT=2;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=343;QR=2419;RO=62;RPL=0;RPP=22.5536;RPPR=137.642;RPR=9;RUN=1;SAF=9;SAP=22.5536;SAR=0;SRF=62;SRP=137.642;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|0:155:37,6,111:37:1434:6,111:231,4452:-355.663,-347.835,-463.831,0,-98.8421,-84.3942 0|0:57:9,3,45:9:355:3,45:112,1812:-146.658,-140.2,-168.505,0,-20.0616,-15.6791 0|0:56:16,0,40:16:630:0,40:0,1610:-128.274,-133.091,-184.917,0,-52.2223,-40.1811 dDocent_Contig_4520 89 . C A 2217.9 . AB=0.779817;ABP=77.1392;AC=3;AF=0.5;AN=6;AO=85;CIGAR=1X;DP=109;DPB=109;DPRA=0;EPP=187.585;EPPR=55.1256;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=2880;QR=837;RO=24;RPL=85;RPP=187.585;RPPR=55.1256;RPR=0;RUN=1;SAF=85;SAP=187.585;SAR=0;SRF=24;SRP=55.1256;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:61:10,51:10:349:51:1728:-137.441,0,-13.384 0/1:19:3,16:3:104:16:533:-42.5668,0,-3.98352 0/1:29:11,18:11:384:18:619:-47.3042,0,-26.1658 dDocent_Contig_4521 54 . C T 1342.49 . AB=0.465347;ABP=4.06379;AC=2;AF=0.333333;AN=6;AO=47;CIGAR=1X1M1X;DP=101;DPB=101;DPRA=0;EPP=105.07;EPPR=102.898;GTI=0;LEN=1;MEANALT=2;MQM=60;MQMR=60;NS=3;NUMALT=2;ODDS=1.38778e-17;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=1854;QR=1844;RO=46;RPL=47;RPP=105.07;RPPR=102.898;RPR=0;RUN=1;SAF=47;SAP=105.07;SAR=0;SRF=46;SRP=102.898;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|1:58:26,32,0:26:1041:32,0:1257,0:-95.9456,0,-76.5254,-103.772,-86.1584,-189.534 0|1:20:11,9,0:11:440:9,0:357,0:-26.4725,0,-33.9358,-29.7838,-36.645,-66.0311 0|0:23:9,6,6:9:363:6,6:240,242:-17.2672,-0.180471,-28.3299,0,-10.1716,-28.1508 dDocent_Contig_4523 124 . A G 6749.98 . AB=0.535573;ABP=8.57202;AC=3;AF=0.5;AN=6;AO=271;CIGAR=1X;DP=506;DPB=506;DPRA=0;EPP=591.479;EPPR=513.306;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=9246;QR=8179;RO=235;RPL=0;RPP=591.479;RPPR=513.306;RPR=271;RUN=1;SAF=0;SAP=591.479;SAR=271;SRF=0;SRP=513.306;SRR=235;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:241:122,119:122:4235:119:4017:-289.181,0,-308.798 0/1:116:50,66:50:1713:66:2237:-166.675,0,-119.531 0/1:149:63,86:63:2231:86:2992:-224.666,0,-156.202 dDocent_Contig_4524 15 . T G 7814.35 . AB=0.858447;ABP=247.415;AC=4;AF=0.666667;AN=6;AO=241;CIGAR=1X;DP=274;DPB=274;DPRA=0;EPP=526.335;EPPR=74.6689;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=9533;QR=1213;RO=33;RPL=0;RPP=526.335;RPPR=74.6689;RPR=241;RUN=1;SAF=241;SAP=526.335;SAR=0;SRF=33;SRP=74.6689;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:140:14,126:14:514:126:5014:-408.993,0,-4.45244 0/1:79:17,62:17:622:62:2443:-196.248,0,-32.5279 1/1:55:2,53:2:77:53:2076:-179.716,-9.24751,0 dDocent_Contig_4525 80 . A G 1843.78 . AB=0.712871;ABP=42.7633;AC=3;AF=0.5;AN=6;AO=72;CIGAR=1X;DP=101;DPB=101;DPRA=0;EPP=159.356;EPPR=63.8115;GTI=0;LEN=1;MEANALT=1.33333;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=2438;QR=986;RO=28;RPL=72;RPP=159.356;RPPR=63.8115;RPR=0;RUN=1;SAF=72;SAP=159.356;SAR=0;SRF=28;SRP=63.8115;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:55:9,45:9:314:45:1506:-119.211,0,-11.9826 0/1:14:6,8:6:215:8:273:-20.6883,0,-15.4848 0/1:32:13,19:13:457:19:659:-50.0016,0,-31.8308 dDocent_Contig_4526 38 . C T 379.568 . AB=0.180451;ABP=120.972;AC=3;AF=0.5;AN=6;AO=24;CIGAR=1X;DP=133;DPB=133;DPRA=0;EPP=55.1256;EPPR=239.701;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=916;QR=4233;RO=109;RPL=0;RPP=55.1256;RPPR=239.701;RPR=24;RUN=1;SAF=24;SAP=55.1256;SAR=0;SRF=109;SRP=239.701;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:51:46,5:46:1778:5:201:-3.11857,0,-144.892 0/1:53:43,10:43:1656:10:385:-19.0471,0,-133.319 0/1:29:20,9:20:799:9:330:-21.3031,0,-63.4976 dDocent_Contig_4528 171 . G A 1450.87 . AB=0.705882;ABP=28.0461;AC=3;AF=0.5;AN=6;AO=48;CIGAR=1X;DP=68;DPB=68;DPRA=0;EPP=107.241;EPPR=46.4397;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=1890;QR=808;RO=20;RPL=48;RPP=107.241;RPPR=46.4397;RPR=0;RUN=1;SAF=0;SAP=107.241;SAR=48;SRF=0;SRP=46.4397;SRR=20;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:28:11,17:11:445:17:674:-52.5623,0,-31.9768 0/1:22:3,19:3:120:19:771:-63.0875,0,-4.56465 0/1:18:6,12:6:243:12:445:-34.9594,0,-16.8294 dDocent_Contig_4530 16 . A T 2948.85 . AB=0.16609;ABP=282.89;AC=1;AF=0.166667;AN=6;AO=48;CIGAR=1M4D1X6M1X1M1X9M;DP=289;DPB=263.042;DPRA=0;EPP=107.241;EPPR=111.584;GTI=0;LEN=1;MEANALT=15;MQM=60;MQMR=60;NS=3;NUMALT=6;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=1915;QR=1839;RO=50;RPL=0;RPP=107.241;RPPR=111.584;RPR=48;RUN=1;SAF=48;SAP=107.241;SAR=0;SRF=50;SRP=111.584;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 1|0:150:17,19,29,46,9,4,9:17:634:19,29,46,9,4,9:748,1147,1717,351,152,362:-177.965,-121.547,-167.736,-88.6797,-79.0513,-131.859,-42.4989,-32.8698,0,-80.5607,-154.229,-144.602,-111.735,-65.5538,-203.427,-170.618,-160.99,-128.124,-81.9433,-193.672,-221.321,-153.246,-143.618,-110.751,-64.5699,-176.3,-192.689,-202.444 0|0:49:9,1,8,20,2,3,1:9:335:1,8,20,2,3,1:40,322,736,79,116,40:-57.4837,-56.8966,-84.0207,-33.6418,-57.7737,-58.6619,0,-24.1355,-0.872815,-21.4119,-53.6901,-77.8194,-54.567,-20.9283,-80.5134,-50.6625,-74.7919,-51.5393,-17.9003,-71.5856,-77.185,-56.8966,-81.0257,-57.7737,-24.1355,-77.8194,-74.7919,-84.0207 0|0:90:24,6,11,25,5,3,4:24:870:6,11,25,5,3,4:234,446,886,189,109,162:-64.9408,-52.9265,-122.159,-35.3741,-87.1766,-103.104,0,-51.8016,-34.2493,-63.5146,-56.6724,-108.473,-90.9222,-55.5474,-126.205,-63.2643,-115.064,-97.5139,-62.1392,-118.809,-133.398,-58.8034,-110.604,-93.0535,-57.6784,-114.349,-120.941,-128.637 dDocent_Contig_4531 20 . T A 2864.22 . AB=0.0538922;ABP=291.686;AC=0;AF=0;AN=6;AO=9;CIGAR=1M1X7M;DP=209;DPB=197.333;DPRA=0;EPP=22.5536;EPPR=207.129;GTI=0;LEN=1;MEANALT=2.5;MQM=60;MQMR=60;NS=3;NUMALT=2;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=359;QR=3611;RO=94;RPL=0;RPP=22.5536;RPPR=207.129;RPR=9;RUN=1;SAF=9;SAP=22.5536;SAR=0;SRF=94;SRP=207.129;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|0:115:51,55,8:51:1970:55,8:2080,319:-155.114,0,-145.225,-144.195,-135.511,-303.58 0|0:42:20,20,0:20:754:20,0:750,0:-55.5331,0,-55.8875,-61.5537,-61.9081,-123.34 0|0:52:23,28,1:23:887:28,1:1075,40:-81.298,0,-64.3936,-84.926,-69.5268,-157.462 dDocent_Contig_4532 8 . G A 841.702 . AB=0.463158;ABP=4.13032;AC=3;AF=0.5;AN=6;AO=44;CIGAR=1X;DP=95;DPB=95;DPRA=0;EPP=98.5551;EPPR=113.755;GTI=0;LEN=1;MEANALT=1;MQM=30.2955;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=1693;QR=1935;RO=51;RPL=0;RPP=98.5551;RPPR=113.755;RPR=44;RUN=1;SAF=44;SAP=98.5551;SAR=0;SRF=51;SRP=113.755;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:40:17,23:17:643:23:880:-50.0048,0,-46.1645 0/1:28:16,12:16:611:12:462:-23.6379,0,-46.8996 0/1:27:18,9:18:681:9:351:-16.0503,0,-53.4905 dDocent_Contig_4534 8 . G A 6600.52 . AB=0.576441;ABP=23.261;AC=3;AF=0.5;AN=6;AO=230;CIGAR=1X;DP=399;DPB=399;DPRA=0;EPP=502.449;EPPR=369.989;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=8724;QR=6435;RO=169;RPL=0;RPP=502.449;RPPR=369.989;RPR=230;RUN=1;SAF=230;SAP=502.449;SAR=0;SRF=169;SRP=369.989;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:164:72,92:72:2758:92:3495:-265.312,0,-199.032 0/1:107:60,47:60:2271:47:1776:-127.888,0,-172.403 0/1:128:37,91:37:1406:91:3453:-272.375,0,-88.29 dDocent_Contig_4535 42 . T C 1429.19 . AB=0.301075;ABP=66.9403;AC=2;AF=0.333333;AN=6;AO=56;CIGAR=1X;DP=207;DPB=207;DPRA=4.42857;EPP=124.613;EPPR=330.903;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=2243;QR=5974;RO=151;RPL=0;RPP=124.613;RPPR=330.903;RPR=56;RUN=1;SAF=56;SAP=124.613;SAR=0;SRF=151;SRP=330.903;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:133:85,48:85:3363:48:1924:-133.319,0,-262.68 0/0:21:21,0:21:802:0:0:0,-6.32163,-72.4828 0/1:53:45,8:45:1809:8:319:-13.1228,0,-147.065 dDocent_Contig_4536 12 . C T 1024.96 . AB=0.227723;ABP=133.084;AC=2;AF=0.333333;AN=6;AO=48;CIGAR=1X;DP=243;DPB=243;DPRA=0;EPP=107.241;EPPR=417.762;GTI=0;LEN=1;MEANALT=1.66667;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=1905;QR=7626;RO=191;RPL=0;RPP=107.241;RPPR=417.762;RPR=48;RUN=1;SAF=48;SAP=107.241;SAR=0;SRF=191;SRP=417.762;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:119:78,39:78:3101:39:1549:-104.015,0,-243.524 0/0:41:39,2:39:1556:2:81:0,-4.6565,-132.593 0/1:83:74,7:74:2969:7:275:-0.327793,0,-242.5 dDocent_Contig_4537 115 . A G 264.161 . AB=0.188119;ABP=88.3427;AC=2;AF=0.333333;AN=6;AO=23;CIGAR=1X;DP=210;DPB=210;DPRA=0;EPP=52.9542;EPPR=409.076;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=53.2353;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=0.754011;PAO=0;PQA=0;PQR=0;PRO=0;QA=801;QR=6445;RO=187;RPL=0;RPP=52.9542;RPPR=409.076;RPR=23;RUN=1;SAF=0;SAP=52.9542;SAR=23;SRF=0;SRP=409.076;SRR=187;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:109:105,4:105:3616:4:138:0,-20.0518,-303.843 0/1:16:13,3:13:447:3:104:-4.88661,0,-34.4792 0/1:85:69,16:69:2382:16:559:-25.0522,0,-180.582 dDocent_Contig_4538 15 . G A 48.0569 . AB=0.142857;ABP=34.0313;AC=1;AF=0.166667;AN=6;AO=4;CIGAR=1X;DP=151;DPB=151;DPRA=0.455285;EPP=11.6962;EPPR=322.217;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=163;QR=5884;RO=147;RPL=0;RPP=11.6962;RPPR=322.217;RPR=4;RUN=1;SAF=4;SAP=11.6962;SAR=0;SRF=147;SRP=322.217;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:75:75,0:75:3013:0:0:0,-22.5772,-271.257 0/0:48:48,0:48:1916:0:0:0,-14.4494,-172.644 0/1:28:24,4:24:955:4:163:-6.62959,0,-77.8228 dDocent_Contig_4539 8 . G A 546.083 . AB=0.150943;ABP=283.458;AC=2;AF=0.333333;AN=6;AO=42;CIGAR=1X;DP=292;DPB=292;DPRA=0;EPP=94.2121;EPPR=545.878;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=1602;QR=9540;RO=250;RPL=0;RPP=94.2121;RPPR=545.878;RPR=42;RUN=1;SAF=42;SAP=94.2121;SAR=0;SRF=250;SRP=545.878;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:190:160,30:160:6138:30:1139:-45.6117,0,-495.158 0/0:27:25,2:25:915:2:77:0,-0.818668,-75.3492 0/1:75:65,10:65:2487:10:386:-12.5193,0,-201.455 dDocent_Contig_4540 26 . G A 580.345 . AB=0.343284;ABP=17.3031;AC=3;AF=0.5;AN=6;AO=23;CIGAR=1M2I1X;DP=67;DPB=90;DPRA=0;EPP=52.9542;EPPR=98.5551;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=3.46945e-18;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=918;QR=1741;RO=44;RPL=0;RPP=52.9542;RPPR=98.5551;RPR=23;RUN=1;SAF=23;SAP=52.9542;SAR=0;SRF=44;SRP=98.5551;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|1:31:26,5:26:1012:5:196:-8.68258,0,-82.0408 0|1:12:10,2:10:402:2:81:-4.07337,0,-32.9272 0|1:24:8,16:8:327:16:641:-50.8002,0,-22.5754 dDocent_Contig_4541 79 . T C 51.205 . AB=0.162162;ABP=39.6906;AC=2;AF=0.333333;AN=6;AO=6;CIGAR=1X;DP=42;DPB=42;DPRA=3.7;EPP=16.0391;EPPR=81.1833;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=3.46945e-18;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=212;QR=1286;RO=36;RPL=6;RPP=16.0391;RPPR=81.1833;RPR=0;RUN=1;SAF=6;SAP=16.0391;SAR=0;SRF=36;SRP=81.1833;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:21:18,3:18:645:3:107:-3.66054,0,-52.0591 0/0:5:5,0:5:184:0:0:0,-1.50515,-16.9184 0/1:16:13,3:13:457:3:105:-4.97949,0,-36.6464 dDocent_Contig_4542 107 . N T 85.8405 . AB=0;ABP=0;AC=6;AF=1;AN=6;AO=4;CIGAR=1X1M1X;DP=4;DPB=4;DPRA=0;EPP=11.6962;EPPR=0;GTI=0;LEN=1;MEANALT=1;MQM=21;MQMR=0;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=126;QR=0;RO=0;RPL=0;RPP=11.6962;RPPR=0;RPR=4;RUN=1;SAF=0;SAP=11.6962;SAR=4;SRF=0;SRP=0;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 1|1:2:0,2:0:0:2:60:-3.83669,-0.60206,0 1|1:1:0,1:0:0:1:31:-2.05892,-0.30103,0 1|1:1:0,1:0:0:1:35:-2.08318,-0.30103,0 dDocent_Contig_4543 98 . N T 56.9989 . AB=0;ABP=0;AC=2;AF=1;AN=2;AO=2;CIGAR=1X;DP=2;DPB=2;DPRA=0;EPP=7.35324;EPPR=0;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=0;NS=1;NUMALT=1;ODDS=5.99146;PAIRED=1;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=60;QR=0;RO=0;RPL=2;RPP=7.35324;RPPR=0;RPR=0;RUN=1;SAF=2;SAP=7.35324;SAR=0;SRF=0;SRP=0;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL ./.:.:.:.:.:.:.:. ./.:.:.:.:.:.:.:. 1/1:2:0,2:0:0:2:60:-5.6988,-0.60206,0 dDocent_Contig_4544 8 . T G 700.884 . AB=0.264463;ABP=61.317;AC=3;AF=0.5;AN=6;AO=32;CIGAR=1X;DP=121;DPB=121;DPRA=0;EPP=72.4974;EPPR=196.271;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=0.03125;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=1233;QR=3379;RO=89;RPL=0;RPP=72.4974;RPPR=196.271;RPR=32;RUN=1;SAF=32;SAP=72.4974;SAR=0;SRF=89;SRP=196.271;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:65:50,15:50:1901:15:573:-32.3438,0,-151.762 0/1:17:9,8:9:340:8:311:-23.2368,0,-25.8369 0/1:39:30,9:30:1138:9:349:-20.0307,0,-90.9716 dDocent_Contig_4545 9 . T C 693.197 . AB=0.179372;ABP=202.133;AC=1;AF=0.166667;AN=6;AO=52;CIGAR=1X;DP=414;DPB=414;DPRA=0;EPP=115.927;EPPR=789.083;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=59.9475;NS=3;NUMALT=1;ODDS=1.38778e-17;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=1981;QR=13428;RO=362;RPL=0;RPP=115.927;RPPR=789.083;RPR=52;RUN=1;SAF=52;SAP=115.927;SAR=0;SRF=362;SRP=789.083;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:223:183,40:183:6748:40:1530:-70.8425,0,-540.16 0/0:72:68,4:68:2544:4:149:0,-7.90183,-215.364 0/0:119:111,8:111:4136:8:302:0,-8.28584,-344.811 dDocent_Contig_4547 152 . G A 75.1516 . AB=0.210526;ABP=16.8392;AC=1;AF=0.166667;AN=6;AO=8;CIGAR=1X;DP=75;DPB=75;DPRA=2.38462;EPP=20.3821;EPPR=148.499;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=294;QR=2640;RO=67;RPL=0;RPP=20.3821;RPPR=148.499;RPR=8;RUN=1;SAF=0;SAP=20.3821;SAR=8;SRF=0;SRP=148.499;SRR=67;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:43:39,4:39:1544:4:131:0,-0.841868,-127.101 0/0:13:13,0:13:522:0:0:0,-3.91339,-47.3254 0/1:19:15,4:15:574:4:163:-9.33886,0,-46.2608 dDocent_Contig_4548 22 . C A 552.468 . AB=0.244898;ABP=58.405;AC=2;AF=0.333333;AN=6;AO=24;CIGAR=1X;DP=109;DPB=109;DPRA=4.45455;EPP=55.1256;EPPR=187.585;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=973;QR=3371;RO=85;RPL=0;RPP=55.1256;RPPR=187.585;RPR=24;RUN=1;SAF=24;SAP=55.1256;SAR=0;SRF=85;SRP=187.585;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:65:55,10:55:2177:10:402:-16.972,0,-176.542 0/0:11:11,0:11:446:0:0:0,-3.31133,-40.4956 0/1:33:19,14:19:748:14:571:-41.7977,0,-57.709 dDocent_Contig_4551 66 . A G 277.695 . AB=0.150327;ABP=165.502;AC=1;AF=0.166667;AN=6;AO=27;CIGAR=1X;DP=247;DPB=247;DPRA=0;EPP=61.6401;EPPR=480.734;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=0.981818;PAO=0;PQA=0;PQR=0;PRO=0;QA=992;QR=8632;RO=220;RPL=27;RPP=61.6401;RPPR=480.734;RPR=0;RUN=1;SAF=27;SAP=61.6401;SAR=0;SRF=220;SRP=480.734;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:153:130,23:130:5135:23:834:-29.2924,0,-415.974 0/0:33:31,2:31:1211:2:82:0,-2.15431,-101.487 0/0:61:59,2:59:2286:2:76:0,-11.1482,-198.705 dDocent_Contig_4552 32 . G A 2367.69 . AB=0.0650407;ABP=205.134;AC=0;AF=0;AN=6;AO=8;CIGAR=5M1X4M1X;DP=153;DPB=157.091;DPRA=0;EPP=20.3821;EPPR=65.983;GTI=0;LEN=1;MEANALT=6;MQM=59.25;MQMR=60;NS=3;NUMALT=5;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=320;QR=1112;RO=29;RPL=0;RPP=20.3821;RPPR=65.983;RPR=8;RUN=1;SAF=8;SAP=20.3821;SAR=0;SRF=29;SRP=65.983;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|0:44:17,3,13,1,3,6:17:672:3,13,1,3,6:104,456,41,119,246:-31.9566,-28.6241,-83.0306,0,-46.8559,-51.3906,-33.6885,-80.549,-51.9193,-88.6984,-27.8075,-74.6684,-46.0398,-79.7339,-82.2156,-16.7584,-63.6246,-34.9953,-68.69,-62.8092,-70.2689 0|0:79:11,6,12,7,4,38:11:409:6,12,7,4,38:220,461,279,153,1503:-124.754,-110.086,-141.748,-90.2264,-105.715,-120.082,-105.095,-120.583,-100.723,-136.456,-116.081,-131.57,-111.71,-126.578,-148.345,-4.374,-19.8633,0,-14.869,-25.8584,-26.4043 0|0:30:1,0,10,0,1,17:1:31:0,10,0,1,17:0,390,0,39,683:-85.5811,-85.8822,-88.3678,-53.8284,-56.3123,-53.302,-85.8822,-88.3678,-56.3123,-88.3678,-82.8328,-85.3183,-53.2634,-85.3183,-85.0173,-29.5949,-32.0772,0,-32.0772,-29.028,-26.9597 dDocent_Contig_4553 8 . G A 960.403 . AB=0.237113;ABP=119.464;AC=2;AF=0.333333;AN=6;AO=46;CIGAR=1X;DP=218;DPB=218;DPRA=4.04167;EPP=102.898;EPPR=376.504;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=1748;QR=6592;RO=172;RPL=0;RPP=102.898;RPPR=376.504;RPR=46;RUN=1;SAF=46;SAP=102.898;SAR=0;SRF=172;SRP=376.504;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:115:80,35:80:3079:35:1323:-84.7401,0,-242.647 0/0:24:24,0:24:918:0:0:0,-7.22472,-82.9368 0/1:79:68,11:68:2595:11:425:-14.8231,0,-209.957 dDocent_Contig_4554 25 . T C 2398.64 . AB=0.439791;ABP=9.02448;AC=2;AF=0.333333;AN=6;AO=84;CIGAR=1X;DP=218;DPB=218;DPRA=3.53704;EPP=185.414;EPPR=293.988;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=3338;QR=5201;RO=134;RPL=0;RPP=185.414;RPPR=293.988;RPR=84;RUN=1;SAF=84;SAP=185.414;SAR=0;SRF=134;SRP=293.988;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:136:79,57:79:3094:57:2278:-164.249,0,-237.627 0/0:27:27,0:27:1026:0:0:0,-8.12781,-92.6333 0/1:55:28,27:28:1081:27:1060:-79.1378,0,-81.0198 dDocent_Contig_4555 106 . N G 189.221 . AB=0;ABP=0;AC=2;AF=1;AN=2;AO=10;CIGAR=2X2M1X1M1X3M1X2M1X;DP=10;DPB=10;DPRA=0;EPP=24.725;EPPR=0;GTI=0;LEN=1;MEANALT=1;MQM=21;MQMR=0;NS=1;NUMALT=1;ODDS=11.5366;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=341;QR=0;RO=0;RPL=0;RPP=24.725;RPPR=0;RPR=10;RUN=1;SAF=0;SAP=24.725;SAR=10;SRF=0;SRP=0;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL .:.:.:.:.:.:.:. .:.:.:.:.:.:.:. 1|1:10:0,10:0:0:10:341:-18.9221,-3.0103,0 dDocent_Contig_4557 48 . A T 183.881 . AB=0.120805;ABP=189.101;AC=2;AF=0.333333;AN=6;AO=18;CIGAR=1X;DP=204;DPB=204;DPRA=1.35455;EPP=42.0968;EPPR=389.719;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=0.978495;PAO=0;PQA=0;PQR=0;PRO=0;QA=733;QR=7391;RO=186;RPL=0;RPP=42.0968;RPPR=372.908;RPR=18;RUN=1;SAF=18;SAP=42.0968;SAR=0;SRF=184;SRP=389.719;SRR=2;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:95:82,13:82:3268:13:531:-19.5385,0,-265.591 0/1:54:49,5:49:1943:5:202:-2.30625,0,-158.817 0/0:55:55,0:55:2180:0:0:0,-16.5566,-196.379 dDocent_Contig_4558 13 . A G 356.121 . AB=0.0517241;ABP=306.717;AC=1;AF=0.166667;AN=6;AO=9;CIGAR=1X1M1X;DP=212;DPB=212;DPRA=0;EPP=22.5536;EPPR=378.675;GTI=0;LEN=1;MEANALT=3;MQM=60;MQMR=60;NS=3;NUMALT=3;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=356;QR=6737;RO=173;RPL=0;RPP=22.5536;RPPR=378.675;RPR=9;RUN=1;SAF=9;SAP=22.5536;SAR=0;SRF=173;SRP=378.675;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|0:110:86,4,19,0:86:3348:4,19,0:157,750,0:-35.8706,-48.8452,-322.791,0,-262.286,-269.478,-61.7591,-323.996,-275.198,-336.907 0|0:38:34,0,4,0:34:1317:0,4,0:0,159,0:-3.25261,-13.4876,-121.663,0,-108.572,-107.367,-13.4876,-121.663,-108.572,-121.663 0|1:64:53,5,2,4:53:2072:5,2,4:199,81,158:-0.431098,0,-168.828,-9.70502,-163.654,-179.438,-3.38594,-157.331,-167.038,-172.514 dDocent_Contig_4559 11 . A C 1232.14 . AB=0.445545;ABP=5.61177;AC=3;AF=0.5;AN=6;AO=45;CIGAR=1X;DP=101;DPB=101;DPRA=0;EPP=100.727;EPPR=124.613;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=1757;QR=2231;RO=56;RPL=0;RPP=100.727;RPPR=124.613;RPR=45;RUN=1;SAF=45;SAP=100.727;SAR=0;SRF=56;SRP=124.613;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:50:29,21:29:1149:21:821:-59.1557,0,-88.6403 0/1:21:10,11:10:403:11:429:-32.6396,0,-30.3079 0/1:30:17,13:17:679:13:507:-36.942,0,-52.41 dDocent_Contig_4560 1 . N C 629.997 . AB=0;ABP=0;AC=6;AF=1;AN=6;AO=19;CIGAR=1X;DP=19;DPB=19;DPRA=0;EPP=44.2683;EPPR=0;GTI=0;LEN=1;MEANALT=1;MQM=39;MQMR=0;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=737;QR=0;RO=0;RPL=0;RPP=44.2683;RPPR=0;RPR=19;RUN=1;SAF=19;SAP=44.2683;SAR=0;SRF=0;SRP=0;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 1/1:5:0,5:0:0:5:191:-16.3304,-1.50515,0 1/1:6:0,6:0:0:6:234:-19.7945,-1.80618,0 1/1:8:0,8:0:0:8:312:-26.2727,-2.40824,0 dDocent_Contig_4561 12 . G A 952.022 . AB=0.301587;ABP=46.0951;AC=3;AF=0.5;AN=6;AO=38;CIGAR=1X;DP=126;DPB=126;DPRA=0;EPP=85.5263;EPPR=194.1;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=0.738636;PAO=0;PQA=0;PQR=0;PRO=0;QA=1529;QR=3476;RO=88;RPL=0;RPP=85.5263;RPPR=194.1;RPR=38;RUN=1;SAF=38;SAP=85.5263;SAR=0;SRF=88;SRP=194.1;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:60:42,18:42:1665:18:723:-47.3323,0,-132.019 0/1:28:21,7:21:845:7:284:-17.5052,0,-67.9331 0/1:38:25,13:25:966:13:522:-35.8877,0,-75.798 dDocent_Contig_4562 33 . A C 470.986 . AB=0.174194;ABP=145.921;AC=3;AF=0.5;AN=6;AO=27;CIGAR=1X;DP=155;DPB=155;DPRA=0;EPP=61.6401;EPPR=280.959;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=6.93889e-18;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=1091;QR=5017;RO=128;RPL=0;RPP=61.6401;RPPR=280.959;RPR=27;RUN=1;SAF=27;SAP=61.6401;SAR=0;SRF=128;SRP=280.959;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:76:61,15:61:2418:15:606:-31.9999,0,-194.906 0/1:43:38,5:38:1477:5:200:-5.43413,0,-120.247 0/1:36:29,7:29:1122:7:285:-15.1873,0,-90.4248 dDocent_Contig_4563 107 . N T 656.86 . AB=0;ABP=0;AC=4;AF=1;AN=4;AO=21;CIGAR=1X;DP=21;DPB=21;DPRA=0;EPP=48.6112;EPPR=0;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=0;NS=2;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=719;QR=0;RO=0;RPL=0;RPP=48.6112;RPPR=0;RPR=21;RUN=1;SAF=0;SAP=48.6112;SAR=21;SRF=0;SRP=0;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 1/1:20:0,20:0:0:20:683:-61.7855,-6.0206,0 1/1:1:0,1:0:0:1:36:-3.59827,-0.30103,0 ./.:.:.:.:.:.:.:. dDocent_Contig_4564 12 . C A 98.7985 . AB=0.102703;ABP=256.65;AC=2;AF=0.333333;AN=6;AO=19;CIGAR=1X;DP=249;DPB=249;DPRA=1.44531;EPP=44.2683;EPPR=502.449;GTI=0;LEN=1;MEANALT=1;MQM=53;MQMR=60;NS=3;NUMALT=1;ODDS=1.38778e-17;PAIRED=1;PAIREDR=0.995652;PAO=0;PQA=0;PQR=0;PRO=0;QA=760;QR=9233;RO=230;RPL=0;RPP=44.2683;RPPR=502.449;RPR=19;RUN=1;SAF=19;SAP=44.2683;SAR=0;SRF=230;SRP=502.449;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:143:128,15:128:5115:15:603:-11.3178,0,-417.159 0/0:64:64,0:64:2578:0:0:0,-19.2659,-232.147 0/1:42:38,4:38:1540:4:157:-1.81177,0,-126.192 dDocent_Contig_4566 8 . G A 34.4368 . AB=0.128205;ABP=49.8362;AC=1;AF=0.166667;AN=6;AO=5;CIGAR=1X;DP=283;DPB=283;DPRA=0.319672;EPP=13.8677;EPPR=606.68;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=1.73472e-18;PAIRED=1;PAIREDR=0.97482;PAO=0;PQA=0;PQR=0;PRO=0;QA=185;QR=10703;RO=278;RPL=0;RPP=13.8677;RPPR=606.68;RPR=5;RUN=1;SAF=5;SAP=13.8677;SAR=0;SRF=278;SRP=606.68;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:181:181,0:181:6983:0:0:0,-54.4864,-628.332 0/1:39:34,5:34:1296:5:185:-5.26744,0,-105.19 0/0:63:63,0:63:2424:0:0:0,-18.9649,-218.365 dDocent_Contig_4567 8 . G A 76.8833 . AB=0.171429;ABP=35.8306;AC=2;AF=0.333333;AN=6;AO=6;CIGAR=1X;DP=66;DPB=66;DPRA=0.564516;EPP=16.0391;EPPR=133.299;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=233;QR=2321;RO=60;RPL=0;RPP=16.0391;RPPR=133.299;RPR=6;RUN=1;SAF=6;SAP=16.0391;SAR=0;SRF=60;SRP=133.299;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:31:31,0:31:1196:0:0:0,-9.33193,-107.936 0/1:15:13,2:13:504:2:78:-2.88802,0,-41.1935 0/1:20:16,4:16:621:4:155:-8.30484,0,-50.2096 dDocent_Contig_4568 8 . T G 815.838 . AB=0.370787;ABP=15.9171;AC=3;AF=0.5;AN=6;AO=33;CIGAR=1X;DP=89;DPB=89;DPRA=0;EPP=74.6689;EPPR=116.082;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=0.964286;PAO=0;PQA=0;PQR=0;PRO=0;QA=1254;QR=2167;RO=56;RPL=0;RPP=74.6689;RPPR=124.613;RPR=33;RUN=1;SAF=33;SAP=74.6689;SAR=0;SRF=55;SRP=116.082;SRR=1;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:40:25,15:25:969:15:579:-40.4115,0,-75.4822 0/1:25:18,7:18:695:7:251:-15.4062,0,-55.3569 0/1:24:13,11:13:503:11:424:-31.2889,0,-38.394 dDocent_Contig_4569 8 . G A 2859.8 . AB=0.570621;ABP=10.6779;AC=3;AF=0.5;AN=6;AO=101;CIGAR=1X;DP=177;DPB=177;DPRA=0;EPP=222.329;EPPR=168.042;GTI=0;LEN=1;MEANALT=1;MQM=59.7624;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=0.990099;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=3823;QR=2933;RO=76;RPL=0;RPP=222.329;RPPR=168.042;RPR=101;RUN=1;SAF=101;SAP=222.329;SAR=0;SRF=76;SRP=168.042;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:98:49,49:49:1900:49:1845:-136.803,0,-141.741 0/1:26:12,14:12:457:14:527:-39.7856,0,-33.6526 0/1:53:15,38:15:576:38:1451:-114.915,0,-36.2275 dDocent_Contig_4570 107 . N G 260.006 . AB=0;ABP=0;AC=6;AF=1;AN=6;AO=8;CIGAR=2X1I2M;DP=8;DPB=10;DPRA=0;EPP=20.3821;EPPR=0;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=0;NS=3;NUMALT=1;ODDS=1.69407e-21;PAIRED=1;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=271;QR=0;RO=0;RPL=0;RPP=20.3821;RPPR=0;RPR=8;RUN=1;SAF=0;SAP=20.3821;SAR=8;SRF=0;SRP=0;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 1|1:3:0,3:0:0:3:100:-9.3307,-0.90309,0 1|1:4:0,4:0:0:4:137:-12.6682,-1.20412,0 1|1:1:0,1:0:0:1:34:-3.39891,-0.30103,0 dDocent_Contig_4571 124 . C T 1156.58 . AB=0.342105;ABP=35.9253;AC=3;AF=0.5;AN=6;AO=52;CIGAR=1X;DP=152;DPB=152;DPRA=0;EPP=115.927;EPPR=220.158;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=1844;QR=3443;RO=100;RPL=0;RPP=115.927;RPPR=220.158;RPR=52;RUN=1;SAF=0;SAP=115.927;SAR=52;SRF=0;SRP=220.158;SRR=100;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:63:44,19:44:1527:19:658:-40.5704,0,-118.76 0/1:51:39,12:39:1335:12:430:-23.6851,0,-105.096 0/1:38:17,21:17:581:21:756:-56.9254,0,-41.1743 dDocent_Contig_4572 12 . C T 254.876 . AB=0.282051;ABP=19.1015;AC=1;AF=0.166667;AN=6;AO=18;CIGAR=1X;DP=136;DPB=136;DPRA=0;EPP=42.0968;EPPR=259.244;GTI=0;LEN=1;MEANALT=1;MQM=59.8889;MQMR=60;NS=3;NUMALT=1;ODDS=6.93889e-18;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=706;QR=4555;RO=118;RPL=0;RPP=42.0968;RPPR=259.244;RPR=18;RUN=1;SAF=18;SAP=42.0968;SAR=0;SRF=118;SRP=259.244;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:55:51,4:51:1965:4:158:0,-1.956,-162.478 0/0:42:39,3:39:1515:3:118:0,-1.64075,-125.614 0/1:39:28,11:28:1075:11:430:-27.3115,0,-85.3092 dDocent_Contig_4573 12 . G A 11283.4 . AB=0.884615;ABP=69.8248;AC=5;AF=0.833333;AN=6;AO=354;CIGAR=1X;DP=382;DPB=382;DPRA=0;EPP=771.712;EPPR=63.8115;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=13553;QR=1047;RO=28;RPL=0;RPP=771.712;RPPR=63.8115;RPR=354;RUN=1;SAF=354;SAP=771.712;SAR=0;SRF=28;SRP=63.8115;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 1/1:234:21,213:21:779:213:8137:-661.636,-0.0172954,0 0/1:52:6,46:6:229:46:1739:-141.106,0,-5.32194 1/1:96:1,95:1:39:95:3677:-327.119,-25.0023,0 dDocent_Contig_4574 9 . T G 7640.27 . AB=0.121891;ABP=502.211;AC=0;AF=0;AN=6;AO=49;CIGAR=3X;DP=402;DPB=402;DPRA=0;EPP=109.412;EPPR=50.7827;GTI=0;LEN=1;MEANALT=4;MQM=60;MQMR=60;NS=3;NUMALT=4;ODDS=1.11022e-16;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=1893;QR=853;RO=22;RPL=0;RPP=109.412;RPPR=50.7827;RPR=49;RUN=1;SAF=49;SAP=109.412;SAR=0;SRF=22;SRP=50.7827;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|0:234:14,32,31,96,61:14:544:32,31,96,61:1224,1194,3670,2337:-444.008,-347.784,-382.855,-350.182,-294.447,-385.554,-147.096,-91.3614,-93.7598,-162.901,-256.422,-200.687,-203.086,0,-282.763 0|0:41:0,2,6,16,17:0:0:2,6,16,17:74,232,616,646:-103.557,-97.5035,-96.9015,-84.4998,-78.4465,-82.6936,-52.9771,-46.924,-33.9189,-48.1607,-50.5798,-44.5271,-31.5226,0,-45.4623 0|0:127:8,28,12,45,34:8:309:28,12,45,34:1076,467,1727,1315:-221.984,-136.061,-153.01,-186.011,-123.058,-207.777,-82.6378,-19.6854,-69.6347,-94.4701,-116.376,-53.4227,-103.373,0,-131.519 dDocent_Contig_4576 38 . T G 14083.3 . AB=0.890511;ABP=184.479;AC=5;AF=0.833333;AN=6;AO=416;CIGAR=1X;DP=440;DPB=440;DPRA=0;EPP=906.343;EPPR=55.1256;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=16500;QR=961;RO=24;RPL=0;RPP=906.343;RPPR=55.1256;RPR=416;RUN=1;SAF=416;SAP=906.343;SAR=0;SRF=24;SRP=55.1256;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 1/1:257:6,251:6:242:251:9953:-873.022,-55.2074,0 1/1:46:3,43:3:121:43:1709:-142.753,-2.56718,0 0/1:137:15,122:15:598:122:4838:-394.079,0,-12.9165 dDocent_Contig_4577 87 . T C 11802.4 . AB=0.890411;ABP=99.6557;AC=5;AF=0.833333;AN=6;AO=404;CIGAR=1X;DP=425;DPB=425;DPRA=0;EPP=880.285;EPPR=48.6112;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=13830;QR=733;RO=21;RPL=404;RPP=880.285;RPPR=48.6112;RPR=0;RUN=1;SAF=404;SAP=880.285;SAR=0;SRF=21;SRP=48.6112;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 1/1:258:7,251:7:244:251:8588:-750.682,-55.3657,0 0/1:73:8,65:8:279:65:2203:-176.564,0,-3.47381 1/1:94:6,88:6:210:88:3039:-254.512,-9.05436,0 dDocent_Contig_4578 7 . A G 148.379 . AB=0.212766;ABP=36.6912;AC=3;AF=0.5;AN=6;AO=10;CIGAR=1X1M;DP=47;DPB=47;DPRA=0;EPP=24.725;EPPR=74.6689;GTI=0;LEN=1;MEANALT=1.33333;MQM=60;MQMR=60;NS=3;NUMALT=2;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=344;QR=1256;RO=33;RPL=0;RPP=24.725;RPPR=74.6689;RPR=10;RUN=1;SAF=10;SAP=24.725;SAR=0;SRF=33;SRP=74.6689;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|1:14:10,0,4:10:385:0,4:0,140:-8.72912,-11.7394,-43.3763,0,-31.9966,-30.7925 0|1:11:10,0,1:10:386:0,1:0,37:-0.386499,-3.3968,-35.1126,0,-32.087,-31.786 0|1:22:13,4,5:13:485:4,5:118,167:-9.62814,-4.14625,-42.6742,0,-30.3692,-38.2584 dDocent_Contig_4579 8 . G A 262.753 . AB=0.120567;ABP=355.651;AC=3;AF=0.5;AN=6;AO=34;CIGAR=1X;DP=282;DPB=282;DPRA=0;EPP=76.8404;EPPR=541.535;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=1.38778e-17;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=1285;QR=9427;RO=248;RPL=0;RPP=76.8404;RPPR=541.535;RPR=34;RUN=1;SAF=34;SAP=76.8404;SAR=0;SRF=248;SRP=541.535;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:121:105,16:105:3967:16:616:-19.3545,0,-320.704 0/1:82:73,9:73:2769:9:329:-5.2705,0,-224.718 0/1:79:70,9:70:2691:9:340:-7.1731,0,-218.594 dDocent_Contig_4580 107 . N A 117.446 . AB=0;ABP=0;AC=2;AF=1;AN=2;AO=4;CIGAR=1X;DP=4;DPB=4;DPRA=0;EPP=11.6962;EPPR=0;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=0;NS=1;NUMALT=1;ODDS=7.37776;PAIRED=1;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=127;QR=0;RO=0;RPL=0;RPP=11.6962;RPPR=0;RPR=4;RUN=1;SAF=0;SAP=11.6962;SAR=4;SRF=0;SRP=0;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 1/1:4:0,4:0:0:4:127:-11.7444,-1.20412,0 ./.:.:.:.:.:.:.:. ./.:.:.:.:.:.:.:. dDocent_Contig_4581 107 . N T 380.592 . AB=0;ABP=0;AC=6;AF=1;AN=6;AO=12;CIGAR=1X;DP=12;DPB=12;DPRA=0;EPP=29.068;EPPR=0;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=0;NS=3;NUMALT=1;ODDS=1.69407e-21;PAIRED=1;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=405;QR=0;RO=0;RPL=0;RPP=29.068;RPPR=0;RPR=12;RUN=1;SAF=0;SAP=29.068;SAR=12;SRF=0;SRP=0;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 1/1:4:0,4:0:0:4:134:-12.3909,-1.20412,0 1/1:6:0,6:0:0:6:201:-18.4186,-1.80618,0 1/1:2:0,2:0:0:2:70:-6.6474,-0.60206,0 dDocent_Contig_4582 33 . C A 3124.01 . AB=0.763359;ABP=81.9292;AC=3;AF=0.5;AN=6;AO=100;CIGAR=1X;DP=131;DPB=131;DPRA=0;EPP=220.158;EPPR=70.3259;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=6.93889e-18;PAIRED=1;PAIREDR=0.967742;PAO=0;PQA=0;PQR=0;PRO=0;QA=3962;QR=1222;RO=31;RPL=0;RPP=220.158;RPPR=70.3259;RPR=100;RUN=1;SAF=100;SAP=220.158;SAR=0;SRF=31;SRP=70.3259;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:60:7,53:7:268:53:2088:-170.041,0,-6.41397 0/1:29:13,16:13:517:16:643:-49.4732,0,-38.1412 0/1:42:11,31:11:437:31:1231:-98.4096,0,-27.0373 dDocent_Contig_4584 25 . T A 3063.08 . AB=0.126923;ABP=317.339;AC=1;AF=0.166667;AN=6;AO=33;CIGAR=3M1X5M2I11M;DP=260;DPB=274.55;DPRA=0;EPP=74.6689;EPPR=100.727;GTI=0;LEN=1;MEANALT=10;MQM=60;MQMR=60;NS=3;NUMALT=7;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=1251;QR=1766;RO=45;RPL=0;RPP=74.6689;RPPR=100.727;RPR=33;RUN=1;SAF=33;SAP=74.6689;SAR=0;SRF=45;SRP=100.727;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|0:175:30,11,3,0,28,19,3,67:30:1173:11,3,0,28,19,3,67:422,111,0,1054,721,118,2640:-208.16,-182.554,-275.683,-208.112,-269.916,-303.649,-217.19,-278.995,-304.552,-313.632,-130.846,-192.65,-218.208,-227.287,-218.858,-158.077,-219.881,-245.439,-254.518,-168.174,-248.798,-207.484,-269.288,-294.846,-303.925,-217.58,-244.811,-303.022,0,-61.8066,-87.3651,-96.4441,-10.099,-37.3299,-86.737,-76.275 1|0:22:1,0,2,2,1,7,0,7:1:40:0,2,2,1,7,0,7:0,80,70,40,265,0,272:-40.4758,-40.7769,-44.0727,-34.185,-37.481,-36.8789,-35.1725,-38.4682,-31.8767,-37.8661,-37.481,-40.7769,-34.185,-35.1725,-40.4758,-19.0548,-22.3507,-15.7586,-16.7488,-19.0548,-20.2435,-40.7769,-44.0727,-37.481,-38.4682,-40.7769,-22.3507,-44.0727,-18.4248,-21.7211,-15.1283,-16.1185,-18.4248,0,-21.7211,-19.6139 0|0:63:14,0,4,1,5,7,8,21:14:553:0,4,1,5,7,8,21:0,151,32,199,265,303,820:-63.1953,-67.4097,-112.914,-55.0367,-100.541,-99.337,-64.8327,-110.337,-97.9639,-110.036,-51.0221,-96.5271,-84.154,-93.9499,-95.0219,-45.6878,-91.1922,-78.8194,-88.6151,-74.8051,-89.085,-42.5701,-88.0745,-75.7017,-85.4974,-71.6874,-66.353,-85.6663,0,-45.5067,-33.1339,-42.93,-29.1189,-23.7852,-20.6675,-39.1851 dDocent_Contig_4585 62 . G A 216.954 . AB=0.268293;ABP=22.1298;AC=3;AF=0.5;AN=6;AO=11;CIGAR=1X;DP=41;DPB=41;DPRA=0;EPP=26.8965;EPPR=68.1545;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=0;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=427;QR=1164;RO=30;RPL=11;RPP=26.8965;RPPR=68.1545;RPR=0;RUN=1;SAF=11;SAP=26.8965;SAR=0;SRF=30;SRP=68.1545;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:19:16,3:16:604:3:119:-5.37544,0,-48.959 0/1:13:8,5:8:323:5:186:-13.1796,0,-25.5256 0/1:9:6,3:6:237:3:122:-8.66322,0,-18.9919 dDocent_Contig_4586 18 . C G 206.263 . AB=0.4;ABP=4.74748;AC=1;AF=0.166667;AN=6;AO=10;CIGAR=1X3M1X;DP=53;DPB=53;DPRA=0;EPP=24.725;EPPR=96.3836;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=386;QR=1690;RO=43;RPL=0;RPP=24.725;RPPR=96.3836;RPR=10;RUN=1;SAF=10;SAP=24.725;SAR=0;SRF=43;SRP=96.3836;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|1:20:12,8:12:472:8:309:-22.1485,0,-36.8087 0|0:14:13,1:13:508:1:39:0,-0.317855,-42.1693 0|0:19:18,1:18:710:1:38:0,-1.9223,-60.4323 dDocent_Contig_4587 72 . T C 2385.03 . AB=0.686441;ABP=38.6372;AC=3;AF=0.5;AN=6;AO=81;CIGAR=1X;DP=118;DPB=118;DPRA=0;EPP=178.9;EPPR=83.3548;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=3096;QR=1330;RO=37;RPL=81;RPP=178.9;RPPR=83.3548;RPR=0;RUN=1;SAF=81;SAP=178.9;SAR=0;SRF=37;SRP=83.3548;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:56:18,38:18:631:38:1472:-115.891,0,-40.2417 0/1:40:8,32:8:293:32:1211:-97.239,0,-14.6774 0/1:22:11,11:11:406:11:413:-30.8955,0,-30.2635 dDocent_Contig_4588 59 . T C 3745.69 . AB=0.0588235;ABP=89.2305;AC=0;AF=0;AN=6;AO=3;CIGAR=1X1M1X;DP=176;DPB=176;DPRA=0;EPP=9.52472;EPPR=111.584;GTI=0;LEN=1;MEANALT=2;MQM=60;MQMR=60;NS=3;NUMALT=2;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=121;QR=1954;RO=50;RPL=3;RPP=9.52472;RPPR=111.584;RPR=0;RUN=1;SAF=3;SAP=9.52472;SAR=0;SRF=50;SRP=111.584;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|0:92:27,0,64:27:1053:0,64:0,2483:-195.89,-204.018,-290.566,0,-86.6243,-67.3584 0|0:33:7,0,26:7:275:0,26:0,1037:-83.6791,-85.7863,-108.404,0,-23.0117,-15.1849 0|0:51:16,3,32:16:626:3,32:121,1279:-100.523,-95.3646,-145.924,0,-41.4789,-41.8221 dDocent_Contig_4589 10 . G A 193.925 . AB=0.148936;ABP=103.637;AC=1;AF=0.166667;AN=6;AO=16;CIGAR=1X;DP=157;DPB=157;DPRA=0;EPP=37.7539;EPPR=309.188;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=621;QR=5423;RO=141;RPL=0;RPP=37.7539;RPPR=309.188;RPR=16;RUN=1;SAF=16;SAP=37.7539;SAR=0;SRF=141;SRP=309.188;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:94:80,14:80:3109:14:543:-20.9154,0,-251.641 0/0:23:22,1:22:853:1:40:0,-2.92801,-73.0922 0/0:40:39,1:39:1461:1:38:0,-8.24393,-127.951 dDocent_Contig_4590 50 . C T 3562.78 . AB=0.0510204;ABP=174.601;AC=0;AF=0;AN=6;AO=7;CIGAR=1X1M1X;DP=128;DPB=128;DPRA=0;EPP=18.2106;EPPR=33.4109;GTI=0;LEN=1;MEANALT=2;MQM=60;MQMR=60;NS=3;NUMALT=2;ODDS=1.38778e-17;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=280;QR=555;RO=14;RPL=7;RPP=18.2106;RPPR=33.4109;RPR=0;RUN=1;SAF=7;SAP=18.2106;SAR=0;SRF=14;SRP=33.4109;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|0:62:8,4,50:8:319:4,50:158,2014:-163.587,-152.994,-178.06,0,-13.2728,-11.2214 0|0:36:6,1,29:6:236:1,29:40,1169:-94.5516,-93.0628,-112.172,0,-16.1105,-10.6767 0|0:30:0,2,28:0:0:2,28:82,1131:-101.663,-94.8941,-94.292,-8.42884,-1.25122,0 dDocent_Contig_4591 27 . G A 1771.32 . AB=0.372881;ABP=27.8534;AC=3;AF=0.5;AN=6;AO=66;CIGAR=1X3M1X1M1X1M1X2M1X;DP=177;DPB=177;DPRA=0;EPP=146.327;EPPR=220.158;GTI=0;LEN=1;MEANALT=2.33333;MQM=59.8636;MQMR=60;NS=3;NUMALT=2;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=2583;QR=3900;RO=100;RPL=0;RPP=146.327;RPPR=220.158;RPR=66;RUN=1;SAF=66;SAP=146.327;SAR=0;SRF=100;SRP=220.158;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|1:104:71,24,7:71:2779:24,7:942,250:-56.119,0,-221.285,-57.126,-208.139,-283.502 0|1:38:10,28,0:10:398:28,0:1081,0:-86.1202,0,-24.7412,-89.1305,-33.17,-121.906 0|1:35:19,14,2:19:723:14,2:560,79:-40.4157,0,-55.0645,-39.6349,-52.7765,-98.3136 dDocent_Contig_4592 38 . T C 89.8492 . AB=0.153846;ABP=43.6001;AC=1;AF=0.166667;AN=6;AO=8;CIGAR=1X;DP=88;DPB=88;DPRA=2.64286;EPP=20.3821;EPPR=176.728;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=323;QR=3216;RO=80;RPL=0;RPP=20.3821;RPPR=176.728;RPR=8;RUN=1;SAF=8;SAP=20.3821;SAR=0;SRF=80;SRP=176.728;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:39:33,6:33:1338:6:243:-10.5078,0,-108.937 0/0:14:14,0:14:556:0:0:0,-4.21442,-50.3809 0/0:35:33,2:33:1322:2:80:0,-2.94426,-111.651 dDocent_Contig_4593 1 . N G 77.8076 . AB=0;ABP=0;AC=2;AF=1;AN=2;AO=2;CIGAR=1X;DP=2;DPB=2;DPRA=0;EPP=7.35324;EPPR=0;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=0;NS=1;NUMALT=1;ODDS=5.99146;PAIRED=1;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=82;QR=0;RO=0;RPL=0;RPP=7.35324;RPPR=0;RPR=2;RUN=1;SAF=2;SAP=7.35324;SAR=0;SRF=0;SRP=0;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL ./.:.:.:.:.:.:.:. ./.:.:.:.:.:.:.:. 1/1:2:0,2:0:0:2:82:-7.77968,-0.60206,0 dDocent_Contig_4594 209 . N G 107.254 . AB=0;ABP=0;AC=2;AF=1;AN=2;AO=3;CIGAR=1X;DP=3;DPB=3;DPRA=0;EPP=9.52472;EPPR=0;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=0;NS=1;NUMALT=1;ODDS=6.68461;PAIRED=1;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=115;QR=0;RO=0;RPL=3;RPP=9.52472;RPPR=0;RPR=0;RUN=1;SAF=0;SAP=9.52472;SAR=3;SRF=0;SRP=0;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL ./.:.:.:.:.:.:.:. 1/1:3:0,3:0:0:3:115:-10.7249,-0.90309,0 ./.:.:.:.:.:.:.:. dDocent_Contig_4595 37 . G A 617.796 . AB=0.141479;ABP=350.229;AC=2;AF=0.333333;AN=6;AO=50;CIGAR=1X;DP=393;DPB=393;DPRA=0;EPP=111.584;EPPR=747.825;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=1994;QR=13539;RO=343;RPL=0;RPP=111.584;RPPR=747.825;RPR=50;RUN=1;SAF=50;SAP=111.584;SAR=0;SRF=343;SRP=747.825;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:217:188,29:188:7418:29:1167:-39.9834,0,-601.963 0/0:82:76,6:76:3014:6:235:0,-3.16809,-249.842 0/1:94:79,15:79:3107:15:592:-25.3191,0,-251.407 dDocent_Contig_4597 50 . C T 106.809 . AB=0.138462;ABP=76.807;AC=1;AF=0.166667;AN=6;AO=15;CIGAR=1X;DP=157;DPB=157;DPRA=0;EPP=35.5824;EPPR=311.359;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=573;QR=5389;RO=142;RPL=15;RPP=35.5824;RPPR=311.359;RPR=0;RUN=1;SAF=15;SAP=35.5824;SAR=0;SRF=142;SRP=311.359;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:65:56,9:56:2110:9:349:-12.2038,0,-170.557 0/0:52:49,3:49:1924:3:119:0,-4.55838,-162.275 0/0:40:37,3:37:1355:3:105:0,-2.24576,-112.453 dDocent_Contig_4598 13 . T C 4607.85 . AB=0.778325;ABP=139.599;AC=3;AF=0.5;AN=6;AO=158;CIGAR=1X2M2I2M1X;DP=203;DPB=256.333;DPRA=0;EPP=346.103;EPPR=96.3836;GTI=0;LEN=1;MEANALT=1.66667;MQM=41.2975;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=6276;QR=1732;RO=43;RPL=0;RPP=346.103;RPPR=96.3836;RPR=158;RUN=1;SAF=158;SAP=346.103;SAR=0;SRF=43;SRP=96.3836;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|1:116:32,83:32:1290:83:3290:-240.913,0,-81.6188 0|1:45:7,38:7:282:38:1513:-114.426,0,-12.2068 0|1:42:4,37:4:160:37:1473:-110.896,0,-2.26519 dDocent_Contig_4599 39 . C T 91.2124 . AB=0.192308;ABP=24.391;AC=1;AF=0.166667;AN=6;AO=5;CIGAR=2X;DP=48;DPB=48;DPRA=2.36364;EPP=13.8677;EPPR=96.3836;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=201;QR=1714;RO=43;RPL=0;RPP=13.8677;RPPR=96.3836;RPR=5;RUN=1;SAF=5;SAP=13.8677;SAR=0;SRF=43;SRP=96.3836;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|1:26:21,5:21:826:5:201:-10.6441,0,-66.8299 0|0:9:9,0:9:361:0:0:0,-2.70927,-32.8528 0|0:13:13,0:13:527:0:0:0,-3.91339,-47.7766 dDocent_Contig_4601 30 . G A 5246.36 . AB=0.832117;ABP=134.266;AC=4;AF=0.666667;AN=6;AO=162;CIGAR=1X;DP=188;DPB=188;DPRA=0;EPP=354.789;EPPR=59.4686;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=6444;QR=1018;RO=26;RPL=0;RPP=354.789;RPPR=59.4686;RPR=162;RUN=1;SAF=162;SAP=354.789;SAR=0;SRF=26;SRP=59.4686;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:112:14,98:14:567:98:3892:-316.564,0,-17.6571 0/1:25:9,16:9:332:16:641:-50.4978,0,-22.6928 1/1:51:3,48:3:119:48:1911:-161.097,-4.25752,0 dDocent_Contig_4602 30 . G A 72.2005 . AB=0.266667;ABP=10.1038;AC=2;AF=0.333333;AN=6;AO=4;CIGAR=1X;DP=21;DPB=21;DPRA=1.25;EPP=11.6962;EPPR=39.9253;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=160;QR=688;RO=17;RPL=0;RPP=11.6962;RPPR=39.9253;RPR=4;RUN=1;SAF=4;SAP=11.6962;SAR=0;SRF=17;SRP=39.9253;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:6:5,1:5:202:1:41:-2.28839,0,-16.7559 0/0:6:6,0:6:244:0:0:0,-1.80618,-22.3388 0/1:9:6,3:6:242:3:119:-8.38574,0,-19.4472 dDocent_Contig_4603 127 . A G 119.36 . AB=0.208333;ABP=38.4777;AC=3;AF=0.5;AN=6;AO=10;CIGAR=1X;DP=48;DPB=48;DPRA=0;EPP=24.725;EPPR=85.5263;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=329;QR=1223;RO=38;RPL=0;RPP=24.725;RPPR=85.5263;RPR=10;RUN=1;SAF=0;SAP=24.725;SAR=10;SRF=0;SRP=85.5263;SRR=38;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:23:16,7:16:520:7:222:-13.3649,0,-40.1841 0/1:6:5,1:5:172:1:36:-1.79209,0,-14.012 0/1:19:17,2:17:531:2:71:-1.02249,0,-42.3672 dDocent_Contig_4605 98 . N A 66.4848 . AB=0;ABP=0;AC=2;AF=1;AN=2;AO=2;CIGAR=1X;DP=2;DPB=2;DPRA=0;EPP=7.35324;EPPR=0;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=0;NS=1;NUMALT=1;ODDS=5.99146;PAIRED=1;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=70;QR=0;RO=0;RPL=2;RPP=7.35324;RPPR=0;RPR=0;RUN=1;SAF=2;SAP=7.35324;SAR=0;SRF=0;SRP=0;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 1/1:2:0,2:0:0:2:70:-6.6474,-0.60206,0 ./.:.:.:.:.:.:.:. ./.:.:.:.:.:.:.:. dDocent_Contig_4606 7 . A G 46.5178 . AB=0.214286;ABP=12.937;AC=1;AF=0.166667;AN=6;AO=5;CIGAR=1X;DP=122;DPB=122;DPRA=0.855556;EPP=13.8677;EPPR=248.461;GTI=0;LEN=1;MEANALT=1;MQM=48.8;MQMR=45.7265;NS=3;NUMALT=1;ODDS=0;PAIRED=0;PAIREDR=0.401709;PAO=0;PQA=0;PQR=0;PRO=0;QA=164;QR=4426;RO=117;RPL=0;RPP=13.8677;RPPR=257.073;RPR=5;RUN=1;SAF=5;SAP=13.8677;SAR=0;SRF=116;SRP=248.461;SRR=1;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:63:61,2:61:2319:2:48:0,-14.4214,-187.815 0/1:14:11,3:11:400:3:116:-6.47568,0,-28.2999 0/0:45:45,0:45:1707:0:0:0,-13.5463,-140.018 dDocent_Contig_4607 83 . G T 45.251 . AB=0.137931;ABP=69.053;AC=1;AF=0.166667;AN=6;AO=10;CIGAR=1X;DP=124;DPB=124;DPRA=0;EPP=24.725;EPPR=250.558;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=327;QR=3839;RO=114;RPL=10;RPP=24.725;RPPR=250.558;RPR=0;RUN=1;SAF=10;SAP=24.725;SAR=0;SRF=114;SRP=250.558;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:40:39,1:39:1334:1:35:0,-8.54257,-116.861 0/1:58:50,8:50:1644:8:261:-6.34899,0,-130.782 0/0:26:25,1:25:861:1:31:0,-4.72733,-74.707 dDocent_Contig_4608 69 . T C 5470.01 . AB=0.614173;ABP=31.7695;AC=5;AF=0.833333;AN=6;AO=156;CIGAR=1X3M;DP=254;DPB=254;DPRA=0;EPP=341.76;EPPR=105.07;GTI=0;LEN=1;MEANALT=2;MQM=60;MQMR=60;NS=3;NUMALT=2;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=6192;QR=1753;RO=47;RPL=156;RPP=341.76;RPPR=105.07;RPR=0;RUN=1;SAF=156;SAP=341.76;SAR=0;SRF=47;SRP=105.07;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|1:120:32,16,72:32:1179:16,72:583,2892:-228.697,-190.718,-282.296,0,-48.7907,-74.7335 1|1:47:4,9,34:4:151:9,34:336,1318:-122.199,-95.8951,-105.56,-15.1315,0,-17.2732 1|1:87:11,26,50:11:423:26,50:938,1982:-201.629,-128.411,-155.31,-41.7899,0,-61.4725 dDocent_Contig_4609 32 . A T 292.48 . AB=0.324324;ABP=12.9286;AC=3;AF=0.5;AN=6;AO=12;CIGAR=1X;DP=37;DPB=37;DPRA=0;EPP=29.068;EPPR=57.2971;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=489;QR=995;RO=25;RPL=0;RPP=29.068;RPPR=57.2971;RPR=12;RUN=1;SAF=12;SAP=29.068;SAR=0;SRF=25;SRP=57.2971;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:15:7,8:7:280:8:327:-25.2847,0,-21.0563 0/1:13:10,3:10:400:3:122:-7.4591,0,-32.4454 0/1:9:8,1:8:315:1:40:-1.28641,0,-26.0035 dDocent_Contig_4610 8 . A G 2038.51 . AB=0.8;ABP=69.4574;AC=3;AF=0.5;AN=6;AO=68;CIGAR=1X;DP=85;DPB=85;DPRA=0;EPP=150.67;EPPR=39.9253;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=6.93889e-18;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=2600;QR=651;RO=17;RPL=0;RPP=150.67;RPPR=39.9253;RPR=68;RUN=1;SAF=68;SAP=150.67;SAR=0;SRF=17;SRP=39.9253;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:50:6,44:6:234:44:1681:-136.499,0,-6.3796 0/1:20:6,14:6:228:14:532:-42.2031,0,-14.8636 0/1:15:5,10:5:189:10:387:-30.6721,0,-12.8591 dDocent_Contig_4611 8 . G C 1851.16 . AB=0.447368;ABP=6.66752;AC=3;AF=0.5;AN=6;AO=68;CIGAR=1X;DP=152;DPB=152;DPRA=0;EPP=150.67;EPPR=185.414;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=2616;QR=3210;RO=84;RPL=0;RPP=150.67;RPPR=185.414;RPR=68;RUN=1;SAF=68;SAP=150.67;SAR=0;SRF=84;SRP=185.414;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:69:37,32:37:1430:32:1227:-89.9473,0,-108.207 0/1:35:19,16:19:728:16:611:-44.7927,0,-55.3144 0/1:48:28,20:28:1052:20:778:-55.8985,0,-80.5315 dDocent_Contig_4612 46 . C A 180.685 . AB=0.117241;ABP=187.526;AC=2;AF=0.333333;AN=6;AO=17;CIGAR=2M1X1M;DP=145;DPB=141;DPRA=0;EPP=39.9253;EPPR=263.587;GTI=0;LEN=1;MEANALT=2;MQM=60;MQMR=60;NS=3;NUMALT=2;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=682;QR=4715;RO=120;RPL=0;RPP=39.9253;RPPR=263.587;RPR=17;RUN=1;SAF=17;SAP=39.9253;SAR=0;SRF=120;SRP=263.587;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|1:77:64,2,11:64:2517:2,11:78,440:-16.9869,-29.8427,-236.267,0,-200.623,-203.723 0|0:45:38,4,3:38:1490:4,3:157,121:-1.46637,0,-121.309,-2.92666,-112.538,-124.547 0|1:23:18,2,3:18:708:2,3:78,121:-4.56363,-3.57587,-61.2039,0,-51.8303,-57.3385 dDocent_Contig_4613 8 . G T 317.67 . AB=0.209877;ABP=62.2298;AC=2;AF=0.333333;AN=6;AO=17;CIGAR=1X;DP=106;DPB=106;DPRA=1.62;EPP=39.9253;EPPR=196.271;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=655;QR=3419;RO=89;RPL=0;RPP=39.9253;RPPR=196.271;RPR=17;RUN=1;SAF=17;SAP=39.9253;SAR=0;SRF=89;SRP=196.271;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:50:37,13:37:1428:13:500:-30.2962,0,-113.747 0/0:25:25,0:25:952:0:0:0,-7.52575,-85.9939 0/1:31:27,4:27:1039:4:155:-4.99351,0,-84.4832 dDocent_Contig_4614 20 . T A 15589.3 . AB=0.746201;ABP=349.443;AC=3;AF=0.5;AN=6;AO=491;CIGAR=1X;DP=658;DPB=658;DPRA=0;EPP=1069.2;EPPR=365.646;GTI=0;LEN=1;MEANALT=1;MQM=59.9817;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=0.995927;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=19593;QR=6657;RO=167;RPL=0;RPP=1069.2;RPPR=365.646;RPR=491;RUN=1;SAF=491;SAP=1069.2;SAR=0;SRF=167;SRP=365.646;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:352:86,266:86:3425:266:10649:-851.735,0,-202.334 0/1:95:21,74:21:824:74:2919:-234.216,0,-45.8753 0/1:211:60,151:60:2408:151:6025:-478.502,0,-153.354 dDocent_Contig_4615 8 . G A 381.073 . AB=0.141509;ABP=239.66;AC=2;AF=0.333333;AN=6;AO=34;CIGAR=1X;DP=282;DPB=282;DPRA=0;EPP=76.8404;EPPR=541.535;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=1.38778e-17;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=1315;QR=9465;RO=248;RPL=0;RPP=76.8404;RPPR=541.535;RPR=34;RUN=1;SAF=34;SAP=76.8404;SAR=0;SRF=248;SRP=541.535;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:167:142,25:142:5410:25:969:-37.2518,0,-436.625 0/1:45:40,5:40:1539:5:195:-4.37785,0,-125.236 0/0:70:66,4:66:2516:4:151:0,-7.11475,-212.681 dDocent_Contig_4616 18 . A G 2508.45 . AB=0.666667;ABP=32.6871;AC=3;AF=0.5;AN=6;AO=82;CIGAR=1X1M;DP=123;DPB=123;DPRA=0;EPP=181.071;EPPR=79.0118;GTI=0;LEN=1;MEANALT=1.33333;MQM=59.4634;MQMR=60;NS=3;NUMALT=2;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=3235;QR=1391;RO=35;RPL=0;RPP=181.071;RPPR=79.0118;RPR=82;RUN=1;SAF=82;SAP=181.071;SAR=0;SRF=35;SRP=79.0118;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|1:68:15,0,53:15:597:0,53:0,2075:-166.427,-170.942,-220.096,0,-49.55,-33.5955 0|1:25:10,0,15:10:393:0,15:0,597:-46.5358,-49.5461,-81.8678,0,-32.7162,-28.2008 0|1:30:10,6,14:10:401:6,14:232,563:-43.4048,-28.1972,-59.4291,0,-14.841,-28.8426 dDocent_Contig_4619 121 . A T 3352.96 . AB=0.747253;ABP=99.6528;AC=3;AF=0.5;AN=6;AO=136;CIGAR=1X;DP=182;DPB=182;DPRA=0;EPP=298.331;EPPR=102.898;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=4386;QR=1355;RO=46;RPL=0;RPP=298.331;RPPR=102.898;RPR=136;RUN=1;SAF=0;SAP=298.331;SAR=136;SRF=0;SRP=102.898;SRR=46;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:127:31,96:31:913:96:3106:-241.547,0,-44.2183 0/1:29:11,18:11:328:18:557:-41.6935,0,-21.0836 0/1:26:4,22:4:114:22:723:-57.5521,0,-2.71695 dDocent_Contig_4622 80 . A T 64.3351 . AB=0.114286;ABP=229.154;AC=2;AF=0.333333;AN=6;AO=36;CIGAR=1X;DP=419;DPB=419;DPRA=0;EPP=81.1833;EPPR=834.684;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=1237;QR=13133;RO=383;RPL=36;RPP=81.1833;RPPR=834.684;RPR=0;RUN=1;SAF=36;SAP=81.1833;SAR=0;SRF=383;SRP=834.684;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:244:228,16:228:7822:16:555:0,-23.1732,-653.793 0/1:79:71,8:71:2445:8:273:-1.12138,0,-196.534 0/1:96:84,12:84:2866:12:409:-8.23868,0,-229.29 dDocent_Contig_4623 61 . A G 2753.32 . AB=0.153846;ABP=368.319;AC=0;AF=0;AN=6;AO=54;CIGAR=1M1D2M1X;DP=351;DPB=313.2;DPRA=0;EPP=120.27;EPPR=352.617;GTI=0;LEN=1;MEANALT=2.33333;MQM=60;MQMR=60;NS=3;NUMALT=2;ODDS=5.55112e-17;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=1760;QR=5206;RO=161;RPL=54;RPP=120.27;RPPR=352.617;RPR=0;RUN=1;SAF=54;SAP=120.27;SAR=0;SRF=161;SRP=352.617;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|0:220:110,36,73:110:3594:36,73:1182,2209:-143.66,-81.251,-360.684,0,-194.739,-268.279 0|0:56:19,10,27:19:589:10,27:316,824:-60.29,-40.5834,-84.8535,0,-21.8492,-39.1466 0|0:75:32,8,35:32:1023:8,35:262,1079:-76.9043,-65.3682,-145.38,0,-61.2409,-71.8718 dDocent_Contig_4624 17 . C T 354.027 . AB=0.258621;ABP=32.3626;AC=2;AF=0.333333;AN=6;AO=15;CIGAR=1X;DP=67;DPB=67;DPRA=3.22222;EPP=35.5824;EPPR=115.927;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=598;QR=2050;RO=52;RPL=0;RPP=35.5824;RPPR=115.927;RPR=15;RUN=1;SAF=15;SAP=35.5824;SAR=0;SRF=52;SRP=115.927;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:45:31,14:31:1237:14:557:-36.9234,0,-98.0542 0/1:13:12,1:12:447:1:41:-0.181177,0,-36.6494 0/0:9:9,0:9:366:0:0:0,-2.70927,-33.3046 dDocent_Contig_4625 33 . G A 519.158 . AB=0.293333;ABP=30.8341;AC=2;AF=0.333333;AN=6;AO=22;CIGAR=1X;DP=86;DPB=86;DPRA=3.40909;EPP=50.7827;EPPR=141.985;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=859;QR=2540;RO=64;RPL=0;RPP=50.7827;RPPR=141.985;RPR=22;RUN=1;SAF=22;SAP=50.7827;SAR=0;SRF=64;SRP=141.985;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:45:27,18:27:1070:18:698:-49.5941,0,-83.0432 0/0:11:11,0:11:442:0:0:0,-3.31133,-40.1354 0/1:30:26,4:26:1028:4:161:-5.84458,0,-83.7791 dDocent_Contig_4626 186 . C T 31.5291 . AB=0.222222;ABP=9.04217;AC=1;AF=0.166667;AN=6;AO=2;CIGAR=1X;DP=21;DPB=21;DPRA=1.5;EPP=7.35324;EPPR=44.2683;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=0;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=81;QR=738;RO=19;RPL=2;RPP=7.35324;RPPR=44.2683;RPR=0;RUN=1;SAF=0;SAP=7.35324;SAR=2;SRF=0;SRP=44.2683;SRR=19;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:6:6,0:6:230:0:0:0,-1.80618,-21.0601 0/1:9:7,2:7:270:2:81:-4.97646,0,-21.9499 0/0:6:6,0:6:238:0:0:0,-1.80618,-21.7925 dDocent_Contig_4627 77 . T A 110.895 . AB=0.384615;ABP=4.51363;AC=1;AF=0.166667;AN=6;AO=5;CIGAR=1X;DP=53;DPB=53;DPRA=0.65;EPP=13.8677;EPPR=107.241;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=183;QR=1797;RO=48;RPL=5;RPP=13.8677;RPPR=107.241;RPR=0;RUN=1;SAF=5;SAP=13.8677;SAR=0;SRF=48;SRP=107.241;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:23:23,0:23:873:0:0:0,-6.92369,-78.8857 0/0:17:17,0:17:642:0:0:0,-5.11751,-58.1078 0/1:13:8,5:8:282:5:183:-12.9134,0,-21.8062 dDocent_Contig_4628 35 . G A 492.485 . AB=0.294118;ABP=28.0461;AC=1;AF=0.166667;AN=6;AO=23;CIGAR=1X;DP=128;DPB=128;DPRA=0;EPP=52.9542;EPPR=231.015;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=910;QR=4181;RO=105;RPL=0;RPP=52.9542;RPPR=231.015;RPR=23;RUN=1;SAF=23;SAP=52.9542;SAR=0;SRF=105;SRP=231.015;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:68:48,20:48:1909:20:788:-50.7713,0,-151.541 0/0:30:28,2:28:1112:2:81:0,-1.34517,-92.6789 0/0:30:29,1:29:1160:1:41:0,-4.93633,-100.578 dDocent_Contig_4629 7 . T A 23555.1 . AB=0;ABP=0;AC=6;AF=1;AN=6;AO=711;CIGAR=1X;DP=736;DPB=736;DPRA=0;EPP=1546.93;EPPR=52.9542;GTI=0;LEN=1;MEANALT=1.33333;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=27065;QR=882;RO=23;RPL=0;RPP=1546.93;RPPR=52.9542;RPR=711;RUN=1;SAF=711;SAP=1546.93;SAR=0;SRF=23;SRP=52.9542;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 1/1:459:15,444:15:570:444:16892:-1467.82,-86.5317,0 1/1:61:0,61:0:0:61:2317:-208.743,-18.3628,0 1/1:216:8,206:8:312:206:7856:-678.47,-36.1334,0 dDocent_Contig_4630 8 . G A 16443.1 . AB=0;ABP=0;AC=6;AF=1;AN=6;AO=497;CIGAR=1X;DP=517;DPB=517;DPRA=0;EPP=1082.23;EPPR=46.4397;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=19021;QR=743;RO=20;RPL=0;RPP=1082.23;RPPR=46.4397;RPR=497;RUN=1;SAF=497;SAP=1082.23;SAR=0;SRF=20;SRP=46.4397;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 1/1:322:13,309:13:475:309:11839:-1021.95,-53.8484,0 1/1:69:1,68:1:39:68:2584:-228.865,-16.8745,0 1/1:126:6,120:6:229:120:4598:-392.898,-16.954,0 dDocent_Contig_4631 50 . G A 2875.21 . AB=0.469194;ABP=4.74954;AC=3;AF=0.5;AN=6;AO=99;CIGAR=1X;DP=211;DPB=211;DPRA=0;EPP=217.986;EPPR=246.215;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=1.38778e-17;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=3953;QR=4462;RO=112;RPL=99;RPP=217.986;RPPR=246.215;RPR=0;RUN=1;SAF=99;SAP=217.986;SAR=0;SRF=112;SRP=246.215;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:111:61,50:61:2425:50:2001:-146.87,0,-184.994 0/1:49:19,30:19:752:30:1199:-93.4356,0,-53.2514 0/1:51:32,19:32:1285:19:753:-52.7383,0,-100.564 dDocent_Contig_4632 15 . A G 130.995 . AB=0.102804;ABP=296.261;AC=2;AF=0.333333;AN=6;AO=26;CIGAR=1X;DP=318;DPB=318;DPRA=0;EPP=59.4686;EPPR=634.909;GTI=0;LEN=1;MEANALT=1.33333;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=1.38778e-17;PAIRED=0.615385;PAIREDR=0.213058;PAO=0;PQA=0;PQR=0;PRO=0;QA=1043;QR=11604;RO=291;RPL=0;RPP=59.4686;RPPR=634.909;RPR=26;RUN=1;SAF=26;SAP=59.4686;SAR=0;SRF=291;SRP=634.909;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:107:98,9:98:3900:9:359:-0.459468,0,-318.795 0/1:107:93,13:93:3741:13:521:-14.9193,0,-304.377 0/0:104:100,4:100:3963:4:163:0,-16.2487,-341.613 dDocent_Contig_4633 8 . G A 4138.58 . AB=0.725389;ABP=88.1703;AC=3;AF=0.5;AN=6;AO=140;CIGAR=1X;DP=193;DPB=193;DPRA=0;EPP=307.016;EPPR=118.098;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=5297;QR=2036;RO=53;RPL=0;RPP=307.016;RPPR=118.098;RPR=140;RUN=1;SAF=140;SAP=307.016;SAR=0;SRF=53;SRP=118.098;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:99:21,78:21:814:78:2980:-238.563,0,-43.7834 0/1:39:20,19:20:775:19:715:-52.9361,0,-58.3382 0/1:55:12,43:12:447:43:1602:-127.882,0,-24.0161 dDocent_Contig_4634 20 . T A 1866.41 . AB=0.0373444;ABP=451.081;AC=3;AF=0.5;AN=6;AO=9;CIGAR=3M1X2M1X1M2X1M1I1X;DP=241;DPB=236.667;DPRA=0;EPP=22.5536;EPPR=287.473;GTI=0;LEN=1;MEANALT=6;MQM=49;MQMR=60;NS=3;NUMALT=4;ODDS=0;PAIRED=1;PAIREDR=0.992366;PAO=0;PQA=0;PQR=0;PRO=0;QA=345;QR=5138;RO=131;RPL=0;RPP=22.5536;RPPR=287.473;RPR=9;RUN=1;SAF=9;SAP=22.5536;SAR=0;SRF=131;SRP=287.473;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|1:132:83,7,25,5,2:83:3268:7,25,5,2:272,987,185,79:-56.1881,-58.8226,-325.554,0,-246.495,-261.319,-66.1887,-312.675,-253.859,-333.52,-74.6726,-321.16,-262.345,-328.524,-342.909 0|1:37:25,2,4,3,2:25:966:2,4,3,2:79,156,120,82:-5.30251,-6.32407,-85.066,0,-72.8446,-78.1422,-3.06491,-75.9091,-69.5872,-81.5077,-6.05389,-78.8983,-72.5764,-75.641,-84.798 0|1:72:23,0,42,1,5:23:904:0,42,1,5:0,1672,40,190:-130.673,-137.597,-211.951,0,-74.3629,-61.7196,-134.344,-208.699,-71.1101,-208.398,-122.017,-196.371,-58.7835,-193.118,-194.866 dDocent_Contig_4635 91 . A T 348.396 . AB=0.231579;ABP=62.4629;AC=3;AF=0.5;AN=6;AO=22;CIGAR=1X;DP=95;DPB=95;DPRA=0;EPP=50.7827;EPPR=161.528;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=755;QR=2460;RO=73;RPL=22;RPP=50.7827;RPPR=161.528;RPR=0;RUN=1;SAF=22;SAP=50.7827;SAR=0;SRF=73;SRP=161.528;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:46:34,12:34:1154:12:405:-22.9257,0,-90.3158 0/1:25:20,5:20:683:5:176:-8.65955,0,-54.2647 0/1:24:19,5:19:623:5:174:-8.77717,0,-49.157 dDocent_Contig_4636 34 . A G 271.07 . AB=0.136646;ABP=187.639;AC=2;AF=0.333333;AN=6;AO=27;CIGAR=1X;DP=340;DPB=340;DPRA=0;EPP=61.6401;EPPR=682.681;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=0.37037;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=1058;QR=12294;RO=313;RPL=0;RPP=61.6401;RPPR=682.681;RPR=27;RUN=1;SAF=27;SAP=61.6401;SAR=0;SRF=313;SRP=682.681;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:179:174,5:174:6877:5:187:0,-36.6941,-601.437 0/1:68:59,9:59:2311:9:351:-11.4787,0,-187.69 0/1:93:80,13:80:3106:13:520:-19.1512,0,-251.639 dDocent_Contig_4637 60 . A T 2303 . AB=0.380531;ABP=31.0281;AC=3;AF=0.5;AN=6;AO=86;CIGAR=1X;DP=226;DPB=226;DPRA=0;EPP=189.757;EPPR=304.845;GTI=0;LEN=1;MEANALT=1.33333;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=0.971223;PAO=0;PQA=0;PQR=0;PRO=0;QA=3367;QR=5442;RO=139;RPL=86;RPP=189.757;RPPR=304.845;RPR=0;RUN=1;SAF=86;SAP=189.757;SAR=0;SRF=139;SRP=304.845;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:105:57,48:57:2196:48:1872:-137.091,0,-166.228 0/1:52:34,18:34:1351:18:703:-47.9424,0,-106.204 0/1:69:48,20:48:1895:20:792:-50.7891,0,-149.949 dDocent_Contig_4639 143 . G A 322.915 . AB=0.55;ABP=3.44459;AC=1;AF=0.166667;AN=6;AO=13;CIGAR=1X;DP=147;DPB=147;DPRA=0.454545;EPP=31.2394;EPPR=293.988;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=523;QR=5407;RO=134;RPL=0;RPP=31.2394;RPPR=293.988;RPR=13;RUN=1;SAF=0;SAP=31.2394;SAR=13;SRF=0;SRP=293.988;SRR=134;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:77:77,0:77:3095:0:0:0,-23.1793,-278.621 0/1:20:9,11:9:363:11:442:-34.1154,0,-27.0141 0/0:50:48,2:48:1949:2:81:0,-7.36577,-167.914 dDocent_Contig_4640 17 . T A 2812.84 . AB=0.231911;ABP=339.492;AC=3;AF=0.5;AN=6;AO=125;CIGAR=1X3M1X;DP=539;DPB=539;DPRA=0;EPP=265.828;EPPR=748.377;GTI=0;LEN=1;MEANALT=4.33333;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=0.96;PAIREDR=0.927461;PAO=0;PQA=0;PQR=0;PRO=0;QA=4901;QR=15245;RO=386;RPL=0;RPP=274.444;RPPR=841.199;RPR=125;RUN=1;SAF=124;SAP=265.828;SAR=1;SRF=375;SRP=748.377;SRR=11;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|1:263:188,62:188:7421:62:2468:-146.617,0,-591.914 0|1:124:95,23:95:3734:23:882:-43.7815,0,-300.195 0|1:152:103,40:103:4090:40:1551:-96.4079,0,-324.669 dDocent_Contig_4641 22 . T A 6668.93 . AB=0.840237;ABP=172.938;AC=4;AF=0.666667;AN=6;AO=200;CIGAR=1X;DP=228;DPB=228;DPRA=0;EPP=437.305;EPPR=63.8115;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=8056;QR=1135;RO=28;RPL=0;RPP=437.305;RPPR=63.8115;RPR=200;RUN=1;SAF=200;SAP=437.305;SAR=0;SRF=28;SRP=63.8115;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:111:17,94:17:691:94:3787:-307.411,0,-29.1045 0/1:58:10,48:10:403:48:1935:-156.884,0,-19.1701 1/1:59:1,58:1:41:58:2334:-206.121,-13.6662,0 dDocent_Contig_4642 28 . A T 187.348 . AB=0.135135;ABP=131.362;AC=1;AF=0.166667;AN=6;AO=23;CIGAR=1X;DP=450;DPB=450;DPRA=0;EPP=52.9542;EPPR=930.229;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=0.997658;PAO=0;PQA=0;PQR=0;PRO=0;QA=921;QR=17014;RO=427;RPL=0;RPP=52.9542;RPPR=930.229;RPR=23;RUN=1;SAF=23;SAP=52.9542;SAR=0;SRF=427;SRP=930.229;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:248:241,7:241:9592:7:284:0,-48.7214,-836.768 0/1:111:96,15:96:3824:15:596:-20.5587,0,-310.761 0/0:91:90,1:90:3598:1:41:0,-23.2992,-319.76 dDocent_Contig_4643 15 . T C 147.336 . AB=0.333333;ABP=7.35324;AC=1;AF=0.166667;AN=6;AO=6;CIGAR=1X;DP=52;DPB=52;DPRA=1.05882;EPP=16.0391;EPPR=102.898;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=1.73472e-18;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=240;QR=1743;RO=46;RPL=0;RPP=16.0391;RPPR=102.898;RPR=6;RUN=1;SAF=6;SAP=16.0391;SAR=0;SRF=46;SRP=102.898;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:23:23,0:23:875:0:0:0,-6.92369,-79.0657 0/1:18:12,6:12:449:6:240:-16.5575,0,-35.3359 0/0:11:11,0:11:419:0:0:0,-3.31133,-38.0613 dDocent_Contig_4645 15 . G A 238.779 . AB=0.168675;ABP=82.1513;AC=2;AF=0.333333;AN=6;AO=14;CIGAR=1X;DP=94;DPB=94;DPRA=3.77273;EPP=33.4109;EPPR=176.728;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=558;QR=3175;RO=80;RPL=0;RPP=33.4109;RPPR=176.728;RPR=14;RUN=1;SAF=14;SAP=33.4109;SAR=0;SRF=80;SRP=176.728;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:60:48,12:48:1899:12:479:-25.3954,0,-153.058 0/0:11:11,0:11:438:0:0:0,-3.31133,-39.7753 0/1:23:21,2:21:838:2:79:-0.573555,0,-68.8106 dDocent_Contig_4646 105 . N A 915.687 . AB=0;ABP=0;AC=4;AF=1;AN=4;AO=30;CIGAR=3X;DP=32;DPB=32;DPRA=0;EPP=68.1545;EPPR=0;GTI=0;LEN=1;MEANALT=2;MQM=60;MQMR=0;NS=2;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=1009;QR=0;RO=0;RPL=0;RPP=68.1545;RPPR=0;RPR=30;RUN=1;SAF=0;SAP=68.1545;SAR=30;SRF=0;SRP=0;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 1|1:4:0,4:0:0:4:129:-11.9293,-1.20412,0 .:.:.:.:.:.:.:. 1|1:28:0,26:0:0:26:880:-79.3382,-7.82678,0 dDocent_Contig_4647 16 . T A 94.9431 . AB=0.2;ABP=22.5536;AC=2;AF=0.333333;AN=6;AO=5;CIGAR=1M2I3M1X3M1X;DP=32;DPB=33.7778;DPRA=1.78571;EPP=13.8677;EPPR=55.1256;GTI=0;LEN=1;MEANALT=1.5;MQM=49.2;MQMR=60;NS=3;NUMALT=2;ODDS=0;PAIRED=0;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=200;QR=951;RO=24;RPL=0;RPP=13.8677;RPPR=55.1256;RPR=5;RUN=1;SAF=5;SAP=13.8677;SAR=0;SRF=24;SRP=55.1256;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|1:12:11,1,0:11:439:1,0:40,0:-0.175214,0,-36.2543,-3.48654,-36.5554,-39.6615 0|1:13:6,4,3:6:235:4,3:160,95:-11.316,0,-18.1701,-5.51462,-11.7572,-23.9326 0|0:7:7,0,0:7:277:0,0:0,0:0,-2.10721,-25.3005,-2.10721,-25.3005,-25.3005 dDocent_Contig_4648 17 . C T 114.88 . AB=0.184211;ABP=35.9253;AC=1;AF=0.166667;AN=6;AO=8;CIGAR=1X;DP=229;DPB=229;DPRA=0.446281;EPP=20.3821;EPPR=482.906;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=3.46945e-18;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=312;QR=8859;RO=221;RPL=0;RPP=20.3821;RPPR=482.906;RPR=8;RUN=1;SAF=8;SAP=20.3821;SAR=0;SRF=221;SRP=482.906;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:121:121,0:121:4855:0:0:0,-36.4246,-436.846 0/1:38:31,7:31:1231:7:271:-13.312,0,-99.6232 0/0:70:69,1:69:2773:1:41:0,-16.9775,-245.576 dDocent_Contig_4649 8 . G A 3632.43 . AB=0.526531;ABP=4.50817;AC=3;AF=0.5;AN=6;AO=129;CIGAR=1X;DP=245;DPB=245;DPRA=0;EPP=283.13;EPPR=254.901;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=4908;QR=4450;RO=116;RPL=0;RPP=283.13;RPPR=254.901;RPR=129;RUN=1;SAF=129;SAP=283.13;SAR=0;SRF=116;SRP=254.901;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:138:77,61:77:2972:61:2335:-168.821,0,-226.102 0/1:37:20,17:20:751:17:650:-47.6981,0,-56.7774 0/1:70:19,51:19:727:51:1923:-152.247,0,-44.6887 dDocent_Contig_4650 159 . G A 1313.25 . AB=0.539326;ABP=4.20583;AC=3;AF=0.5;AN=6;AO=48;CIGAR=1X;DP=89;DPB=89;DPRA=0;EPP=107.241;EPPR=75.5163;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=6.93889e-18;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=1807;QR=1550;RO=41;RPL=48;RPP=107.241;RPPR=75.5163;RPR=0;RUN=1;SAF=0;SAP=107.241;SAR=48;SRF=0;SRP=92.0407;SRR=41;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:56:27,29:27:1030:29:1089:-81.4526,0,-76.1496 0/1:24:12,12:12:442:12:451:-33.7109,0,-32.8937 0/1:9:2,7:2:78:7:267:-21.6837,0,-4.6942 dDocent_Contig_4651 94 . T G 34.5695 . AB=0.2;ABP=14.7363;AC=1;AF=0.166667;AN=6;AO=3;CIGAR=1X;DP=165;DPB=165;DPRA=0.2;EPP=9.52472;EPPR=354.789;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=105;QR=5453;RO=162;RPL=3;RPP=9.52472;RPPR=354.789;RPR=0;RUN=1;SAF=3;SAP=9.52472;SAR=0;SRF=162;SRP=354.789;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:109:109,0:109:3667:0:0:0,-32.8123,-330.253 0/1:15:12,3:12:418:3:105:-5.28071,0,-33.4384 0/0:41:41,0:41:1368:0:0:0,-12.3422,-123.411 dDocent_Contig_4652 30 . C T 149.59 . AB=0.225806;ABP=23.254;AC=1;AF=0.166667;AN=6;AO=9;CIGAR=1X;DP=106;DPB=106;DPRA=2.61765;EPP=22.5536;EPPR=211.472;GTI=0;LEN=1;MEANALT=1.5;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=3.46945e-18;PAIRED=1;PAIREDR=0.979167;PAO=0;PQA=0;PQR=0;PRO=0;QA=368;QR=3872;RO=96;RPL=0;RPP=22.5536;RPPR=211.472;RPR=9;RUN=1;SAF=9;SAP=22.5536;SAR=0;SRF=96;SRP=211.472;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:58:55,2:55:2216:2:82:0,-9.67551,-191.874 0/0:17:17,0:17:691:0:0:0,-5.11751,-62.5186 0/1:31:24,7:24:965:7:286:-16.7829,0,-77.8175 dDocent_Contig_4653 7 . A T 68.9696 . AB=0.4375;ABP=4.09604;AC=2;AF=0.333333;AN=6;AO=14;CIGAR=1X;DP=44;DPB=44;DPRA=1.33333;EPP=33.4109;EPPR=68.1545;GTI=0;LEN=1;MEANALT=1;MQM=14.1429;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=0;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=541;QR=1144;RO=30;RPL=0;RPP=33.4109;RPPR=68.1545;RPR=14;RUN=1;SAF=14;SAP=33.4109;SAR=0;SRF=30;SRP=68.1545;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:20:9,11:9:349:11:428:-8.41832,0,-25.7502 0/0:12:12,0:12:445:0:0:0,-3.61236,-40.3922 0/1:12:9,3:9:350:3:113:-0.02182,0,-28.249 dDocent_Contig_4654 45 . C T 583.203 . AB=0.254717;ABP=58.4033;AC=3;AF=0.5;AN=6;AO=27;CIGAR=1X;DP=106;DPB=106;DPRA=0;EPP=61.6401;EPPR=174.557;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=1052;QR=3183;RO=79;RPL=0;RPP=61.6401;RPPR=174.557;RPR=27;RUN=1;SAF=27;SAP=61.6401;SAR=0;SRF=79;SRP=174.557;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:55:42,13:42:1686:13:490:-27.8718,0,-135.4 0/1:19:14,5:14:570:5:201:-12.7509,0,-45.9224 0/1:32:23,9:23:927:9:361:-23.2204,0,-74.0993 dDocent_Contig_4655 155 . G A 133.214 . AB=0.228571;ABP=25.4075;AC=2;AF=0.333333;AN=6;AO=8;CIGAR=1X;DP=46;DPB=46;DPRA=1.59091;EPP=20.3821;EPPR=85.5263;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=296;QR=1429;RO=38;RPL=0;RPP=20.3821;RPPR=85.5263;RPR=8;RUN=1;SAF=0;SAP=20.3821;SAR=8;SRF=0;SRP=85.5263;SRR=38;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:11:6,5:6:231:5:190:-14.1526,0,-17.8455 0/1:24:21,3:21:788:3:106:-2.66117,0,-64.0019 0/0:11:11,0:11:410:0:0:0,-3.31133,-37.2354 dDocent_Contig_4656 8 . G A 2555.7 . AB=0.285714;ABP=184.483;AC=2;AF=0.333333;AN=6;AO=130;CIGAR=2M2X1M1X;DP=455;DPB=473.667;DPRA=0;EPP=285.302;EPPR=363.475;GTI=0;LEN=1;MEANALT=5;MQM=30.5077;MQMR=60;NS=3;NUMALT=5;ODDS=0;PAIRED=0.1;PAIREDR=0.915663;PAO=0;PQA=0;PQR=0;PRO=0;QA=4998;QR=6338;RO=166;RPL=0;RPP=285.302;RPPR=363.475;RPR=130;RUN=1;SAF=130;SAP=285.302;SAR=0;SRF=166;SRP=363.475;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|1:227:68,16,5,27,75,35:68:2593:16,5,27,75,35:624,195,1027,2881,1304:-154.856,-160.889,-368.822,-161.409,-359.723,-372.658,-129.278,-327.594,-328.116,-333.903,0,-198.34,-198.856,-166.733,-190.194,-71.7165,-270.044,-270.567,-238.436,-109.172,-273.946 0|1:84:37,1,6,0,21,19:37:1416:1,6,0,21,19:39,216,0,802,611:-36.599,-46.9628,-162.9,-30.6659,-146.136,-145.105,-47.7371,-163.201,-146.912,-163.977,0,-115.47,-99.1811,-116.245,-109.923,-0.426405,-115.905,-99.6156,-116.68,-68.9593,-110.961 0|0:144:61,1,5,11,34,32:61:2329:1,5,11,34,32:39,194,422,1315,1113:-69.5872,-87.1739,-277.995,-74.908,-265.256,-264.528,-73.3701,-263.711,-251.448,-261.176,-5.92829,-196.287,-184.023,-182.483,-186.828,0,-190.37,-178.106,-176.565,-109.14,-181.513 dDocent_Contig_4657 22 . G C 4701.99 . AB=0.726744;ABP=79.8198;AC=4;AF=0.666667;AN=6;AO=147;CIGAR=1X;DP=195;DPB=195;DPRA=0;EPP=322.217;EPPR=107.241;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=5878;QR=1913;RO=48;RPL=0;RPP=322.217;RPPR=107.241;RPR=147;RUN=1;SAF=147;SAP=322.217;SAR=0;SRF=48;SRP=107.241;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:114:35,79:35:1414:79:3159:-250.057,0,-93.1907 1/1:23:1,22:1:41:22:870:-74.5143,-2.82912,0 0/1:58:12,46:12:458:46:1849:-149.151,0,-24.0969 dDocent_Contig_4658 7 . A G 331.796 . AB=0.1875;ABP=152.299;AC=3;AF=0.5;AN=6;AO=33;CIGAR=1X;DP=176;DPB=176;DPRA=0;EPP=74.6689;EPPR=311.359;GTI=0;LEN=1;MEANALT=1.33333;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=1007;QR=5387;RO=142;RPL=0;RPP=74.6689;RPPR=311.359;RPR=33;RUN=1;SAF=33;SAP=74.6689;SAR=0;SRF=142;SRP=311.359;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:89:77,12:77:2942:12:335:-3.62438,0,-238.163 0/1:41:35,6:35:1297:6:189:-4.97358,0,-104.672 0/1:46:30,15:30:1148:15:483:-30.1009,0,-89.9545 dDocent_Contig_4659 15 . C T 244.191 . AB=0.160377;ABP=109.208;AC=2;AF=0.333333;AN=6;AO=17;CIGAR=1X;DP=120;DPB=120;DPRA=3.78571;EPP=39.9253;EPPR=226.672;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=657;QR=3936;RO=103;RPL=0;RPP=39.9253;RPPR=226.672;RPR=17;RUN=1;SAF=17;SAP=39.9253;SAR=0;SRF=103;SRP=226.672;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:53:45,8:45:1711:8:306:-11.9456,0,-138.296 0/0:14:14,0:14:532:0:0:0,-4.21442,-48.2213 0/1:53:44,9:44:1693:9:351:-15.9964,0,-136.674 dDocent_Contig_4660 164 . A G 231.347 . AB=0.141667;ABP=136.845;AC=1;AF=0.166667;AN=6;AO=17;CIGAR=1X;DP=297;DPB=297;DPRA=1.35593;EPP=39.9253;EPPR=593.775;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=675;QR=10926;RO=280;RPL=17;RPP=39.9253;RPPR=593.775;RPR=0;RUN=1;SAF=0;SAP=39.9253;SAR=17;SRF=0;SRP=611.023;SRR=280;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:112:112,0:112:4394:0:0:0,-33.7154,-395.442 0/0:65:65,0:65:2491:0:0:0,-19.5669,-224.346 0/1:120:103,17:103:4041:17:675:-24.9586,0,-327.586 dDocent_Contig_4662 10 . T G 827.431 . AB=0.20297;ABP=157.808;AC=3;AF=0.5;AN=6;AO=41;CIGAR=1X;DP=202;DPB=202;DPRA=0;EPP=92.0407;EPPR=352.617;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=1645;QR=5776;RO=161;RPL=0;RPP=92.0407;RPPR=352.617;RPR=41;RUN=1;SAF=41;SAP=92.0407;SAR=0;SRF=161;SRP=352.617;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:119:98,21:98:3574:21:834:-39.5397,0,-285.99 0/1:39:24,15:24:837:15:607:-43.2275,0,-63.8981 0/1:44:39,5:39:1365:5:204:-5.49871,0,-109.879 dDocent_Contig_4664 20 . T C 1326.43 . AB=0.229839;ABP=160.232;AC=3;AF=0.5;AN=6;AO=57;CIGAR=1X1M;DP=248;DPB=248;DPRA=0;EPP=126.784;EPPR=376.504;GTI=0;LEN=1;MEANALT=2.33333;MQM=60;MQMR=60;NS=3;NUMALT=2;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=2304;QR=6864;RO=172;RPL=0;RPP=126.784;RPPR=376.504;RPR=57;RUN=1;SAF=57;SAP=126.784;SAR=0;SRF=172;SRP=376.504;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|1:158:110,11,35:110:4414:11,35:447,1419:-83.9031,-80.1473,-440.515,0,-326.808,-353.141 0|1:28:16,3,9:16:647:3,9:123,366:-25.3708,-20.0342,-72.4727,0,-43.1852,-50.6291 0|1:62:46,3,13:46:1803:3,13:121,519:-28.8917,-32.764,-180.096,0,-138.255,-144.316 dDocent_Contig_4666 77 . T A 80.1295 . AB=0.227273;ABP=17.2236;AC=1;AF=0.166667;AN=6;AO=5;CIGAR=1X;DP=47;DPB=47;DPRA=1.76;EPP=13.8677;EPPR=94.2121;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=1.73472e-18;PAIRED=1;PAIREDR=0.97619;PAO=0;PQA=0;PQR=0;PRO=0;QA=179;QR=1533;RO=42;RPL=5;RPP=13.8677;RPPR=94.2121;RPR=0;RUN=1;SAF=5;SAP=13.8677;SAR=0;SRF=42;SRP=94.2121;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:18:18,0:18:649:0:0:0,-5.41854,-58.7401 0/0:7:7,0:7:262:0:0:0,-2.10721,-23.9381 0/1:22:17,5:17:622:5:179:-9.83685,0,-49.6921 dDocent_Contig_4667 11 . A C 172.888 . AB=0.112903;ABP=325.789;AC=2;AF=0.333333;AN=6;AO=35;CIGAR=1X;DP=335;DPB=335;DPRA=0;EPP=79.0118;EPPR=652.281;GTI=0;LEN=1;MEANALT=1.33333;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=1311;QR=11324;RO=299;RPL=0;RPP=79.0118;RPPR=652.281;RPR=35;RUN=1;SAF=35;SAP=79.0118;SAR=0;SRF=299;SRP=652.281;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:169:153,16:153:5780:16:602:-3.64187,0,-469.308 0/1:79:66,12:66:2513:12:450:-17.1665,0,-202.71 0/0:87:80,7:80:3031:7:259:0,-2.52677,-249.29 dDocent_Contig_4668 48 . T C 216.542 . AB=0.108808;ABP=259.548;AC=1;AF=0.166667;AN=6;AO=25;CIGAR=7M1X;DP=241;DPB=242.125;DPRA=0;EPP=57.2971;EPPR=461.191;GTI=0;LEN=1;MEANALT=2;MQM=60;MQMR=60;NS=3;NUMALT=2;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=999;QR=8157;RO=211;RPL=0;RPP=57.2971;RPPR=461.191;RPR=25;RUN=1;SAF=25;SAP=57.2971;SAR=0;SRF=211;SRP=461.191;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|1:167:145,0,20:145:5618:0,20:0,804:-22.8436,-66.493,-528.011,0,-461.753,-455.733 0|0:26:22,3,1:22:852:3,1:109,39:-2.25912,0,-69.0852,-5.66927,-66.7823,-75.38 0|0:48:44,0,4:44:1687:0,4:0,156:0,-13.2453,-151.693,-0.0344944,-138.871,-137.667 dDocent_Contig_4669 98 . N T 127.607 . AB=0;ABP=0;AC=2;AF=1;AN=2;AO=4;CIGAR=1X;DP=4;DPB=4;DPRA=0;EPP=11.6962;EPPR=0;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=0;NS=1;NUMALT=1;ODDS=7.37776;PAIRED=1;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=138;QR=0;RO=0;RPL=4;RPP=11.6962;RPPR=0;RPR=0;RUN=1;SAF=4;SAP=11.6962;SAR=0;SRF=0;SRP=0;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL ./.:.:.:.:.:.:.:. 1/1:4:0,4:0:0:4:138:-12.7604,-1.20412,0 ./.:.:.:.:.:.:.:. dDocent_Contig_4670 7 . T A 7572.98 . AB=0.677966;ABP=19.2411;AC=5;AF=0.833333;AN=6;AO=248;CIGAR=1X;DP=286;DPB=286;DPRA=0;EPP=541.535;EPPR=85.5263;GTI=0;LEN=1;MEANALT=1;MQM=57.4315;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=9398;QR=1453;RO=38;RPL=0;RPP=541.535;RPPR=85.5263;RPR=248;RUN=1;SAF=248;SAP=541.535;SAR=0;SRF=38;SRP=85.5263;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 1/1:172:15,157:15:565:157:5971:-483.215,-0.588738,0 1/1:55:4,51:4:154:51:1912:-157.108,-2.32319,0 0/1:59:19,40:19:734:40:1515:-118.498,0,-48.6308 dDocent_Contig_4671 21 . T A 7290.11 . AB=0.750809;ABP=171.844;AC=3;AF=0.5;AN=6;AO=232;CIGAR=1X;DP=309;DPB=309;DPRA=0;EPP=506.792;EPPR=170.214;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=1.38778e-17;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=9192;QR=3048;RO=77;RPL=0;RPP=506.792;RPPR=170.214;RPR=232;RUN=1;SAF=232;SAP=506.792;SAR=0;SRF=77;SRP=170.214;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:174:50,124:50:1978:124:4944:-392.476,0,-125.845 0/1:67:10,57:10:398:57:2240:-181.605,0,-16.0083 0/1:68:17,51:17:672:51:2008:-160.452,0,-40.3374 dDocent_Contig_4672 31 . A C 3027.16 . AB=0.653595;ABP=34.3618;AC=3;AF=0.5;AN=6;AO=100;CIGAR=1X;DP=153;DPB=153;DPRA=0;EPP=220.158;EPPR=118.098;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=3928;QR=2106;RO=53;RPL=0;RPP=220.158;RPPR=118.098;RPR=100;RUN=1;SAF=100;SAP=220.158;SAR=0;SRF=53;SRP=118.098;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:88:20,68:20:798:68:2683:-215.093,0,-45.6452 0/1:45:28,17:28:1105:17:654:-45.6409,0,-86.1901 0/1:20:5,15:5:203:15:591:-47.5051,0,-12.6325 dDocent_Contig_4673 57 . C T 106.259 . AB=0.151515;ABP=72.629;AC=2;AF=0.333333;AN=6;AO=10;CIGAR=1X;DP=71;DPB=71;DPRA=6.6;EPP=24.725;EPPR=135.47;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=3.46945e-18;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=370;QR=2318;RO=61;RPL=10;RPP=24.725;RPPR=135.47;RPR=0;RUN=1;SAF=10;SAP=24.725;SAR=0;SRF=61;SRP=135.47;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:54:46,8:46:1770:8:300:-11.1006,0,-143.281 0/0:5:5,0:5:183:0:0:0,-1.50515,-16.8257 0/1:12:10,2:10:365:2:70:-3.03497,0,-29.5813 dDocent_Contig_4674 40 . G A 3987.12 . AB=0.573276;ABP=13.8302;AC=3;AF=0.5;AN=6;AO=133;CIGAR=1X;DP=232;DPB=232;DPRA=0;EPP=291.816;EPPR=217.986;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=1.38778e-17;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=5260;QR=3887;RO=99;RPL=0;RPP=291.816;RPPR=217.986;RPR=133;RUN=1;SAF=133;SAP=291.816;SAR=0;SRF=99;SRP=217.986;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:131:50,81:50:1920:81:3202:-248.823,0,-133.557 0/1:30:14,16:14:566:16:647:-49.5336,0,-42.2519 0/1:71:35,36:35:1401:36:1411:-105.878,0,-104.97 dDocent_Contig_4675 25 . C T 19231 . AB=0.661084;ABP=231.772;AC=3;AF=0.5;AN=6;AO=671;CIGAR=1X;DP=1015;DPB=1015;DPRA=0;EPP=1460.07;EPPR=734.797;GTI=0;LEN=1;MEANALT=1.66667;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=24810;QR=12583;RO=337;RPL=0;RPP=1460.07;RPPR=734.797;RPR=671;RUN=1;SAF=671;SAP=1460.07;SAR=0;SRF=337;SRP=734.797;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:613:194,412:194:7263:412:15265:-1190.46,0,-470.799 0/1:165:57,108:57:2109:108:3978:-308.462,0,-140.383 0/1:237:86,151:86:3211:151:5567:-429.701,0,-217.808 dDocent_Contig_4678 14 . T A 1474.85 . AB=0.0789474;ABP=61.5258;AC=0;AF=0;AN=6;AO=3;CIGAR=3X12M1X;DP=73;DPB=67.75;DPRA=0;EPP=9.52472;EPPR=35.5824;GTI=0;LEN=1;MEANALT=2.5;MQM=60;MQMR=60;NS=3;NUMALT=3;ODDS=1.38778e-17;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=88;QR=580;RO=15;RPL=0;RPP=9.52472;RPPR=35.5824;RPR=3;RUN=1;SAF=3;SAP=9.52472;SAR=0;SRF=15;SRP=35.5824;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|0:35:7,6,0,22:7:270:6,0,22:239,0,874:-69.8491,-52.5923,-72.9549,-71.9563,-74.7611,-94.1258,0,-2.79982,-22.168,-15.5453 0|0:17:2,1,1,13:2:79:1,1,13:41,33,517:-41.9867,-39.2035,-45.4037,-39.9251,-43.0407,-46.1246,0,-3.12024,-3.86264,-2.60003 0|0:21:6,0,2,13:6:231:0,2,13:0,55,520:-41.1368,-42.9429,-61.908,-38.6141,-57.5739,-56.9719,0,-19.0469,-14.7289,-15.1335 dDocent_Contig_4679 51 . T G 626.302 . AB=0.149826;ABP=308.689;AC=2;AF=0.333333;AN=6;AO=48;CIGAR=1X;DP=396;DPB=396;DPRA=0;EPP=107.241;EPPR=758.683;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=1889;QR=13796;RO=348;RPL=48;RPP=107.241;RPPR=758.683;RPR=0;RUN=1;SAF=48;SAP=107.241;SAR=0;SRF=348;SRP=758.683;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:182:157,25:157:6252:25:982:-33.8942,0,-507.643 0/1:105:87,18:87:3423:18:706:-32.2589,0,-276.525 0/0:109:104,5:104:4121:5:201:0,-14.3418,-352.397 dDocent_Contig_4680 15 . C T 453.013 . AB=0.0810811;ABP=59.4099;AC=3;AF=0.5;AN=6;AO=3;CIGAR=1X2M;DP=54;DPB=54;DPRA=0;EPP=9.52472;EPPR=70.3259;GTI=0;LEN=1;MEANALT=3;MQM=60;MQMR=60;NS=3;NUMALT=2;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=120;QR=1223;RO=31;RPL=0;RPP=9.52472;RPPR=70.3259;RPR=3;RUN=1;SAF=3;SAP=9.52472;SAR=0;SRF=31;SRP=70.3259;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|1:17:6,11,0:6:235:11,0:442,0:-35.0185,0,-16.404,-36.8247,-19.7153,-56.1451 0|1:11:6,3,1:6:237:3,1:121,41:-8.16411,0,-18.5883,-6.58522,-16.1057,-25.7808 0|1:26:19,4,2:19:751:4,2:162,79:-7.64158,0,-60.5924,-6.8633,-55.2956,-68.0534 dDocent_Contig_4681 8 . G T 1643.76 . AB=0.0769231;ABP=104.067;AC=0;AF=0;AN=6;AO=5;CIGAR=1X3M1X;DP=155;DPB=155;DPRA=0;EPP=13.8677;EPPR=191.928;GTI=0;LEN=1;MEANALT=2;MQM=60;MQMR=60;NS=3;NUMALT=2;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=194;QR=3326;RO=87;RPL=0;RPP=13.8677;RPPR=191.928;RPR=5;RUN=1;SAF=5;SAP=13.8677;SAR=0;SRF=87;SRP=191.928;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|0:65:46,5,14:46:1776:5,14:194,496:-26.5127,-24.4119,-168.777,0,-129.905,-141.63 0|0:31:20,0,10:20:720:0,10:0,397:-26.7944,-32.815,-91.5341,0,-58.8387,-55.8284 0|0:59:21,0,38:21:830:0,38:0,1490:-116.592,-122.914,-191.219,0,-68.6987,-57.2596 dDocent_Contig_4682 25 . G T 11713.2 . AB=0.0486815;ABP=1747.46;AC=0;AF=0;AN=6;AO=48;CIGAR=2X;DP=986;DPB=986;DPRA=0;EPP=107.241;EPPR=980.471;GTI=0;LEN=1;MEANALT=4.33333;MQM=60;MQMR=60;NS=3;NUMALT=3;ODDS=0;PAIRED=0.75;PAIREDR=0.641631;PAO=0;PQA=0;PQR=0;PRO=0;QA=1841;QR=16111;RO=466;RPL=0;RPP=107.241;RPPR=1014.92;RPR=48;RUN=1;SAF=48;SAP=107.241;SAR=0;SRF=462;SRP=980.471;SRR=4;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|0:299:132,7,6,150:132:4596:7,6,150:262,228,5732:-430.422,-448.704,-820.293,-451.459,-803.701,-823.35,0,-352.228,-354.984,-328.529 0|0:353:203,17,19,106:203:6955:17,19,106:670,693,4053:-271.322,-277.307,-836.732,-275.824,-785.24,-834.645,0,-509.409,-507.925,-532.626 0|0:334:131,24,3,165:131:4560:24,3,165:909,116,6322:-475.103,-440.017,-803.548,-505.009,-801.245,-874.863,0,-296.224,-361.22,-321.079 dDocent_Contig_4683 45 . T A 4131.01 . AB=0.8;ABP=112.453;AC=4;AF=0.666667;AN=6;AO=130;CIGAR=1X;DP=158;DPB=158;DPRA=0;EPP=285.302;EPPR=63.8115;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=6.93889e-18;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=5090;QR=1115;RO=28;RPL=0;RPP=285.302;RPPR=63.8115;RPR=130;RUN=1;SAF=130;SAP=285.302;SAR=0;SRF=28;SRP=63.8115;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:93:18,75:18:713:75:2920:-234.91,0,-36.4935 1/1:18:0,18:0:0:18:713:-64.4853,-5.41854,0 0/1:47:10,37:10:402:37:1457:-117.229,0,-22.3917 dDocent_Contig_4687 43 . G A 283.643 . AB=0.285714;ABP=19.7617;AC=1;AF=0.166667;AN=6;AO=16;CIGAR=1X;DP=147;DPB=147;DPRA=8.6875;EPP=37.7539;EPPR=287.473;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=628;QR=5172;RO=131;RPL=0;RPP=37.7539;RPPR=287.473;RPR=16;RUN=1;SAF=16;SAP=37.7539;SAR=0;SRF=131;SRP=287.473;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:97:93,4:93:3656:4:156:0,-14.7835,-314.672 0/0:8:8,0:8:315:0:0:0,-2.40824,-28.7141 0/1:42:30,12:30:1201:12:472:-30.1882,0,-95.7258 dDocent_Contig_4688 15 . A C 33.1946 . AB=0.142857;ABP=26.2761;AC=1;AF=0.166667;AN=6;AO=3;CIGAR=1X;DP=89;DPB=89;DPRA=0.617647;EPP=9.52472;EPPR=189.757;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=123;QR=3420;RO=86;RPL=0;RPP=9.52472;RPPR=189.757;RPR=3;RUN=1;SAF=3;SAP=9.52472;SAR=0;SRF=86;SRP=189.757;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:48:48,0:48:1914:0:0:0,-14.4494,-172.463 0/0:20:20,0:20:781:0:0:0,-6.0206,-70.6027 0/1:21:18,3:18:725:3:123:-5.14316,0,-59.2544 dDocent_Contig_4690 156 . A C 108.526 . AB=0.147541;ABP=68.8308;AC=1;AF=0.166667;AN=6;AO=16;CIGAR=1X;DP=235;DPB=235;DPRA=0;EPP=37.7539;EPPR=478.563;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=591;QR=8513;RO=219;RPL=0;RPP=37.7539;RPPR=478.563;RPR=16;RUN=1;SAF=0;SAP=37.7539;SAR=16;SRF=0;SRP=478.563;SRR=219;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:126:122,4:122:4773:4:160:0,-23.146,-414.723 0/0:48:45,3:45:1715:3:90:0,-6.05403,-146.185 0/1:61:52,9:52:2025:9:341:-12.6765,0,-164.081 dDocent_Contig_4692 106 . N C 2231.85 . AB=0.768421;ABP=62.4629;AC=6;AF=1;AN=6;AO=73;CIGAR=2X4M;DP=95;DPB=95;DPRA=0;EPP=161.528;EPPR=0;GTI=0;LEN=1;MEANALT=3;MQM=53.9589;MQMR=0;NS=3;NUMALT=2;ODDS=0;PAIRED=0.931507;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=2227;QR=0;RO=0;RPL=0;RPP=161.528;RPPR=0;RPR=73;RUN=1;SAF=0;SAP=161.528;SAR=73;SRF=0;SRP=0;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 1|1:34:0,7,26:0:0:7,26:237,740:-77.4311,-58.2111,-56.1039,-19.2158,0,-11.3891 1|1:28:0,8,20:0:0:8,20:269,588:-67.2115,-45.4095,-43.0013,-22.1232,0,-16.1026 1|1:33:0,4,27:0:0:4,27:137,899:-84.0545,-72.9341,-71.73,-11.2591,0,-3.13127 dDocent_Contig_4695 24 . G A 80.6009 . AB=0.14;ABP=59.2949;AC=1;AF=0.166667;AN=6;AO=7;CIGAR=1X;DP=163;DPB=163;DPRA=0.884956;EPP=10.7656;EPPR=341.76;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=0.714286;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=273;QR=6083;RO=156;RPL=0;RPP=18.2106;RPPR=341.76;RPR=7;RUN=1;SAF=6;SAP=10.7656;SAR=1;SRF=156;SRP=341.76;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:52:52,0:52:2024:0:0:0,-15.6536,-182.356 0/0:61:61,0:61:2384:0:0:0,-18.3628,-214.727 0/1:50:43,7:43:1675:7:273:-9.884,0,-135.929 dDocent_Contig_4696 1 . N G 76.8682 . AB=0;ABP=0;AC=2;AF=1;AN=2;AO=2;CIGAR=1X;DP=2;DPB=2;DPRA=0;EPP=7.35324;EPPR=0;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=0;NS=1;NUMALT=1;ODDS=5.99146;PAIRED=1;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=81;QR=0;RO=0;RPL=0;RPP=7.35324;RPPR=0;RPR=2;RUN=1;SAF=2;SAP=7.35324;SAR=0;SRF=0;SRP=0;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL ./.:.:.:.:.:.:.:. ./.:.:.:.:.:.:.:. 1/1:2:0,2:0:0:2:81:-7.68573,-0.60206,0 dDocent_Contig_4697 30 . A G 243.983 . AB=0.666667;ABP=5.9056;AC=4;AF=0.666667;AN=6;AO=9;CIGAR=1X;DP=13;DPB=13;DPRA=0;EPP=22.5536;EPPR=11.6962;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=13.5;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=311;QR=137;RO=4;RPL=0;RPP=22.5536;RPPR=11.6962;RPR=9;RUN=1;SAF=0;SAP=22.5536;SAR=9;SRF=0;SRP=11.6962;SRR=4;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:5:2,3:2:69:3:103:-8.10482,0,-0.958975 1/1:1:0,1:0:0:1:35:-3.49863,-0.30103,0 0/1:7:2,5:2:68:5:173:-13.8029,0,-0.544905 dDocent_Contig_4698 107 . N T 230.425 . AB=0;ABP=0;AC=4;AF=1;AN=4;AO=7;CIGAR=1X;DP=7;DPB=7;DPRA=0;EPP=18.2106;EPPR=0;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=0;NS=2;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=245;QR=0;RO=0;RPL=0;RPP=18.2106;RPPR=0;RPR=7;RUN=1;SAF=0;SAP=18.2106;SAR=7;SRF=0;SRP=0;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 1/1:3:0,3:0:0:3:105:-9.79616,-0.90309,0 ./.:.:.:.:.:.:.:. 1/1:4:0,4:0:0:4:140:-12.9449,-1.20412,0 dDocent_Contig_4699 11 . G T 83.4469 . AB=0.114943;ABP=115.053;AC=1;AF=0.166667;AN=6;AO=10;CIGAR=1X;DP=199;DPB=199;DPRA=1.55357;EPP=24.725;EPPR=413.419;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=6.93889e-18;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=400;QR=7431;RO=189;RPL=0;RPP=24.725;RPPR=413.419;RPR=10;RUN=1;SAF=10;SAP=24.725;SAR=0;SRF=189;SRP=413.419;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:49:49,0:49:1955:0:0:0,-14.7505,-176.149 0/0:63:63,0:63:2472:0:0:0,-18.9649,-222.641 0/1:87:77,10:77:3004:10:400:-10.1686,0,-244.278 dDocent_Contig_4700 20 . C T 146.112 . AB=0.139535;ABP=100.07;AC=2;AF=0.333333;AN=6;AO=19;CIGAR=1X;DP=203;DPB=203;DPRA=0;EPP=36.0395;EPPR=402.561;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=0.894737;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=758;QR=7312;RO=184;RPL=0;RPP=44.2683;RPPR=402.561;RPR=19;RUN=1;SAF=18;SAP=36.0395;SAR=1;SRF=184;SRP=402.561;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:117:110,7:110:4365:7:276:0,-10.0135,-367.589 0/1:31:24,7:24:956:7:281:-16.33,0,-77.0087 0/1:55:50,5:50:1991:5:201:-1.91424,0,-162.824 dDocent_Contig_4701 16 . T C 5718.02 . AB=0.818841;ABP=124.865;AC=4;AF=0.666667;AN=6;AO=174;CIGAR=1X;DP=201;DPB=201;DPRA=0;EPP=380.846;EPPR=61.6401;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=6935;QR=1037;RO=27;RPL=0;RPP=380.846;RPPR=61.6401;RPR=174;RUN=1;SAF=174;SAP=380.846;SAR=0;SRF=27;SRP=61.6401;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:72:14,58:14:541:58:2286:-184.238,0,-27.3483 1/1:63:2,61:2:82:61:2434:-211.436,-11.1852,0 0/1:66:11,55:11:414:55:2215:-179.651,0,-17.7335 dDocent_Contig_4702 42 . A G 586.98 . AB=0.0588235;ABP=89.2305;AC=3;AF=0.5;AN=6;AO=3;CIGAR=1X1M1X6M1X;DP=195;DPB=195;DPRA=0;EPP=9.52472;EPPR=302.673;GTI=0;LEN=1;MEANALT=3;MQM=60;MQMR=60;NS=3;NUMALT=4;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=115;QR=5347;RO=138;RPL=0;RPP=9.52472;RPPR=302.673;RPR=3;RUN=1;SAF=3;SAP=9.52472;SAR=0;SRF=138;SRP=302.673;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|1:76:55,0,18,0,2:55:2150:0,18,0,2:0,683,0,76:-39.4395,-55.9962,-232.759,0,-176.762,-171.344,-55.9962,-232.759,-176.762,-232.759,-49.7631,-226.526,-170.53,-226.526,-225.924 0|1:51:38,0,6,3,4:38:1486:0,6,3,4:0,229,115,157:-7.34431,-18.7834,-140.961,0,-122.176,-120.37,-9.34544,-131.523,-112.738,-130.62,-5.86758,-128.048,-109.263,-118.61,-126.844 0|1:68:45,5,10,0,6:45:1711:5,10,0,6:183,378,0,234:-17.4371,-16.0371,-154.838,0,-125.36,-137.298,-30.9835,-156.343,-140.308,-171.292,-11.745,-137.108,-121.073,-152.057,-150.251 dDocent_Contig_4703 33 . T A 57.0878 . AB=0.153846;ABP=30.0702;AC=1;AF=0.166667;AN=6;AO=4;CIGAR=2X;DP=45;DPB=45;DPRA=2.73684;EPP=11.6962;EPPR=92.0407;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=1.73472e-18;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=163;QR=1653;RO=41;RPL=0;RPP=11.6962;RPPR=92.0407;RPR=4;RUN=1;SAF=4;SAP=11.6962;SAR=0;SRF=41;SRP=92.0407;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|1:26:22,4:22:889:4:163:-7.23165,0,-72.4904 0|0:7:7,0:7:281:0:0:0,-2.10721,-25.662 0|0:12:12,0:12:483:0:0:0,-3.61236,-43.822 dDocent_Contig_4704 121 . T A 47.03 . AB=0.214286;ABP=12.937;AC=1;AF=0.166667;AN=6;AO=3;CIGAR=1X3M2X;DP=50;DPB=50;DPRA=1.07692;EPP=9.52472;EPPR=87.6977;GTI=0;LEN=1;MEANALT=3;MQM=33.3333;MQMR=60;NS=3;NUMALT=3;ODDS=0;PAIRED=0.333333;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=113;QR=1306;RO=39;RPL=0;RPP=9.52472;RPPR=87.6977;RPR=3;RUN=1;SAF=3;SAP=9.52472;SAR=0;SRF=0;SRP=87.6977;SRR=39;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|1:14:9,0,0,3:9:302:0,0,3:0,0,113:-3.54914,-6.25841,-30.7581,-6.25841,-30.7581,-30.7581,0,-24.4956,-24.4956,-23.5925 0|0:23:17,3,3,0:17:563:3,3,0:118,103,0:-4.67235,0,-44.7213,-4.64923,-40.4163,-49.2294,-9.78986,-45.6244,-50.1325,-55.3413 0|0:13:13,0,0,0:13:441:0,0,0:0,0,0:0,-3.91339,-40.0156,-3.91339,-40.0156,-40.0156,-3.91339,-40.0156,-40.0156,-40.0156 dDocent_Contig_4705 8 . G A 218.09 . AB=0.174419;ABP=82.1933;AC=3;AF=0.5;AN=6;AO=15;CIGAR=1X;DP=86;DPB=86;DPRA=0;EPP=35.5824;EPPR=157.185;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=0.6;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=579;QR=2721;RO=71;RPL=0;RPP=35.5824;RPPR=157.185;RPR=15;RUN=1;SAF=15;SAP=35.5824;SAR=0;SRF=71;SRP=157.185;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:43:35,8:35:1353:8:312:-15.5006,0,-109.11 0/1:18:15,3:15:571:3:116:-5.39916,0,-46.3116 0/1:25:21,4:21:797:4:151:-6.43203,0,-64.5304 dDocent_Contig_4706 15 . T C 365.802 . AB=0.19;ABP=86.4817;AC=2;AF=0.333333;AN=6;AO=24;CIGAR=1X;DP=242;DPB=242;DPRA=0;EPP=55.1256;EPPR=476.391;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=6.93889e-18;PAIRED=1;PAIREDR=0.995413;PAO=0;PQA=0;PQR=0;PRO=0;QA=974;QR=8731;RO=218;RPL=0;RPP=55.1256;RPPR=476.391;RPR=24;RUN=1;SAF=24;SAP=55.1256;SAR=0;SRF=218;SRP=476.391;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:142:137,5:137:5524:5:202:0,-24.1842,-478.402 0/1:33:25,8:25:981:8:328:-19.9564,0,-78.6501 0/1:67:56,11:56:2226:11:444:-20.1468,0,-180.327 dDocent_Contig_4707 30 . T C 8651.26 . AB=0.747922;ABP=195.742;AC=3;AF=0.5;AN=6;AO=270;CIGAR=1X1M;DP=361;DPB=361;DPRA=0;EPP=589.308;EPPR=157.185;GTI=0;LEN=1;MEANALT=2.33333;MQM=60;MQMR=60;NS=3;NUMALT=2;ODDS=0;PAIRED=1;PAIREDR=0.915493;PAO=0;PQA=0;PQR=0;PRO=0;QA=10827;QR=2642;RO=71;RPL=0;RPP=589.308;RPPR=157.185;RPR=270;RUN=1;SAF=270;SAP=589.308;SAR=0;SRF=71;SRP=157.185;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|1:221:43,11,166:43:1606:11,166:433,6666:-536.331,-513.657,-641.833,0,-95.8571,-81.5098 0|1:52:14,3,35:14:523:3,35:122,1389:-110.11,-104.261,-146.174,0,-32.7265,-32.2595 0|1:88:14,5,69:14:513:5,69:199,2772:-224.207,-212.037,-252.447,0,-25.5048,-21.1274 dDocent_Contig_4708 94 . G A 68.5468 . AB=0.134146;ABP=98.3432;AC=2;AF=0.333333;AN=6;AO=11;CIGAR=1X;DP=90;DPB=90;DPRA=5.125;EPP=26.8965;EPPR=174.557;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=379;QR=2687;RO=79;RPL=11;RPP=26.8965;RPPR=174.557;RPR=0;RUN=1;SAF=11;SAP=26.8965;SAR=0;SRF=79;SRP=174.557;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:68:61,7:61:2074:7:240:-1.46506,0,-166.465 0/1:14:10,4:10:338:4:139:-8.63827,0,-26.5333 0/0:8:8,0:8:275:0:0:0,-2.40824,-25.085 dDocent_Contig_4709 33 . T C 43.2114 . AB=0.133333;ABP=38.0434;AC=1;AF=0.166667;AN=6;AO=4;CIGAR=1X;DP=82;DPB=82;DPRA=1.15385;EPP=11.6962;EPPR=172.385;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=161;QR=3077;RO=78;RPL=0;RPP=11.6962;RPPR=172.385;RPR=4;RUN=1;SAF=4;SAP=11.6962;SAR=0;SRF=78;SRP=172.385;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:30:26,4:26:1035:4:161:-5.844,0,-84.4148 0/0:30:30,0:30:1192:0:0:0,-9.0309,-107.563 0/0:22:22,0:22:850:0:0:0,-6.62266,-76.8033 dDocent_Contig_4710 8 . G A 990.752 . AB=0.175793;ABP=319.814;AC=3;AF=0.5;AN=6;AO=61;CIGAR=1X;DP=347;DPB=347;DPRA=0;EPP=135.47;EPPR=621.88;GTI=0;LEN=1;MEANALT=1.33333;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=0.989474;PAO=0;PQA=0;PQR=0;PRO=0;QA=2313;QR=10935;RO=285;RPL=0;RPP=135.47;RPPR=621.88;RPR=61;RUN=1;SAF=61;SAP=135.47;SAR=0;SRF=285;SRP=621.88;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:206:185,21:185:7084:21:794:-9.77235,0,-575.414 0/1:46:35,11:35:1328:11:409:-23.3089,0,-105.959 0/1:95:65,29:65:2523:29:1110:-71.5169,0,-198.577 dDocent_Contig_4711 7 . A C 188.176 . AB=0.117371;ABP=273.873;AC=2;AF=0.333333;AN=6;AO=25;CIGAR=1X;DP=258;DPB=258;DPRA=2.36667;EPP=57.2971;EPPR=508.963;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=953;QR=8788;RO=233;RPL=0;RPP=57.2971;RPPR=508.963;RPR=25;RUN=1;SAF=25;SAP=57.2971;SAR=0;SRF=233;SRP=508.963;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:179:159,20:159:6005:20:766:-15.3831,0,-486.547 0/1:34:29,5:29:1084:5:187:-6.9574,0,-87.632 0/0:45:45,0:45:1699:0:0:0,-13.5463,-153.176 dDocent_Contig_4712 9 . G A 85.7247 . AB=0.142857;ABP=72.8076;AC=2;AF=0.333333;AN=6;AO=10;CIGAR=1X3M3X;DP=122;DPB=122;DPRA=0;EPP=24.725;EPPR=244.044;GTI=0;LEN=1;MEANALT=1.33333;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=6.93889e-18;PAIRED=1;PAIREDR=0.954955;PAO=0;PQA=0;PQR=0;PRO=0;QA=375;QR=4352;RO=111;RPL=0;RPP=24.725;RPPR=244.044;RPR=10;RUN=1;SAF=10;SAP=24.725;SAR=0;SRF=111;SRP=244.044;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|0:59:57,1:57:2226:1:38:0,-14.0422,-196.74 0|1:20:17,3:17:661:3:113:-4.51894,0,-53.8018 0|1:43:37,6:37:1465:6:224:-7.57597,0,-119.167 dDocent_Contig_4714 10 . A C 35.7395 . AB=0.166667;ABP=20.3821;AC=1;AF=0.166667;AN=6;AO=3;CIGAR=1X;DP=85;DPB=85;DPRA=0.537313;EPP=9.52472;EPPR=181.071;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=0.804878;PAO=0;PQA=0;PQR=0;PRO=0;QA=116;QR=3177;RO=82;RPL=0;RPP=9.52472;RPPR=181.071;RPR=3;RUN=1;SAF=3;SAP=9.52472;SAR=0;SRF=82;SRP=181.071;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:54:54,0:54:2082:0:0:0,-16.2556,-187.583 0/1:18:15,3:15:591:3:116:-5.39774,0,-48.1129 0/0:13:13,0:13:504:0:0:0,-3.91339,-45.7054 dDocent_Contig_4715 46 . G C 3316.99 . AB=0.377301;ABP=45.6404;AC=3;AF=0.5;AN=6;AO=123;CIGAR=1X2M1X3M1X;DP=326;DPB=326;DPRA=0;EPP=261.486;EPPR=419.933;GTI=0;LEN=1;MEANALT=2.66667;MQM=60;MQMR=60;NS=3;NUMALT=2;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=4804;QR=7512;RO=192;RPL=122;RPP=261.486;RPPR=419.933;RPR=1;RUN=1;SAF=123;SAP=270.101;SAR=0;SRF=192;SRP=419.933;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|1:160:92,64,3:92:3595:64,3:2513,114:-178.999,0,-276.272,-197.347,-286.191,-491.973 0|1:102:61,38,2:61:2383:38,2:1480,78:-103.368,0,-184.55,-115.319,-189.578,-310.613 0|1:64:39,21,4:39:1534:21,4:811,157:-54.8557,0,-119.86,-53.6839,-113.271,-178.666 dDocent_Contig_4716 12 . C G 352.52 . AB=0.225806;ABP=43.4978;AC=2;AF=0.333333;AN=6;AO=14;CIGAR=2M1X2M1X;DP=62;DPB=65.6667;DPRA=0;EPP=33.4109;EPPR=70.3259;GTI=0;LEN=1;MEANALT=3;MQM=60;MQMR=59.9032;NS=3;NUMALT=3;ODDS=6.93889e-18;PAIRED=0;PAIREDR=0.806452;PAO=0;PQA=0;PQR=0;PRO=0;QA=551;QR=1210;RO=31;RPL=0;RPP=33.4109;RPPR=70.3259;RPR=14;RUN=1;SAF=14;SAP=33.4109;SAR=0;SRF=31;SRP=70.3259;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|1:21:12,3,4,2:12:464:3,4,2:113,158,70:-9.47327,-11.111,-48.3231,0,-36.2215,-37.0341,-7.37326,-43.5353,-32.5408,-44.9538 0|1:27:12,3,9,3:12:468:3,9,3:113,354,104:-25.5676,-23.6812,-61.2511,0,-33.0301,-35.8245,-20.7328,-53.711,-30.0871,-58.3162 0|0:14:7,5,1,1:7:278:5,1,1:185,39,40:-5.73388,0,-21.3784,-4.61413,-19.6785,-27.2783,-4.52328,-19.5881,-24.2781,-27.1883 dDocent_Contig_4717 18 . G A 1931.66 . AB=0.496296;ABP=3.02638;AC=3;AF=0.5;AN=6;AO=67;CIGAR=1X;DP=135;DPB=135;DPRA=0;EPP=148.499;EPPR=150.67;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=2649;QR=2723;RO=68;RPL=0;RPP=148.499;RPPR=150.67;RPR=67;RUN=1;SAF=67;SAP=148.499;SAR=0;SRF=68;SRP=150.67;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:71:36,35:36:1448:35:1379:-102.99,0,-109.195 0/1:15:5,10:5:198:10:405:-32.2946,0,-13.6814 0/1:49:27,22:27:1077:22:865:-63.4045,0,-82.4708 dDocent_Contig_4719 96 . G A 39.7132 . AB=0.173913;ABP=24.253;AC=2;AF=0.333333;AN=6;AO=7;CIGAR=1X;DP=56;DPB=56;DPRA=0;EPP=18.2106;EPPR=109.412;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=244;QR=1688;RO=49;RPL=7;RPP=18.2106;RPPR=109.412;RPR=0;RUN=1;SAF=7;SAP=18.2106;SAR=0;SRF=49;SRP=109.412;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:33:30,3:30:1031:3:105:0,-0.137828,-83.3034 0/1:10:9,1:9:308:1:35:-0.488329,0,-25.0422 0/1:13:10,3:10:349:3:104:-5.7897,0,-27.8334 dDocent_Contig_4720 38 . C T 1004 . AB=0.317073;ABP=38.7602;AC=2;AF=0.333333;AN=6;AO=39;CIGAR=1X;DP=157;DPB=157;DPRA=1.80882;EPP=87.6977;EPPR=259.244;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=1559;QR=4713;RO=118;RPL=0;RPP=87.6977;RPPR=259.244;RPR=39;RUN=1;SAF=39;SAP=87.6977;SAR=0;SRF=118;SRP=259.244;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:96:61,35:61:2441:35:1400:-97.3585,0,-190.935 0/1:27:23,4:23:908:4:159:-6.56414,0,-73.8956 0/0:34:34,0:34:1364:0:0:0,-10.235,-123.02 dDocent_Contig_4721 14 . C A 1490.11 . AB=0.481818;ABP=3.32615;AC=3;AF=0.5;AN=6;AO=53;CIGAR=1X;DP=110;DPB=110;DPRA=0;EPP=118.098;EPPR=126.784;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=2074;QR=2243;RO=57;RPL=0;RPP=118.098;RPPR=126.784;RPR=53;RUN=1;SAF=53;SAP=118.098;SAR=0;SRF=57;SRP=126.784;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:56:32,24:32:1272:24:924:-66.6042,0,-97.8943 0/1:15:4,11:4:151:11:438:-35.2597,0,-9.44052 0/1:39:21,18:21:820:18:712:-52.6696,0,-62.375 dDocent_Contig_4722 18 . C T 3224.89 . AB=0.112994;ABP=233.272;AC=0;AF=0;AN=6;AO=20;CIGAR=1X3M1X;DP=177;DPB=177;DPRA=0;EPP=46.4397;EPPR=115.927;GTI=0;LEN=1;MEANALT=2;MQM=60;MQMR=60;NS=3;NUMALT=2;ODDS=0;PAIRED=0.9;PAIREDR=0.673077;PAO=0;PQA=0;PQR=0;PRO=0;QA=769;QR=2043;RO=52;RPL=0;RPP=46.4397;RPPR=115.927;RPR=20;RUN=1;SAF=20;SAP=46.4397;SAR=0;SRF=52;SRP=115.927;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|0:80:23,12,45:23:906:12,45:467,1794:-140.81,-109.357,-180.278,0,-36.161,-60.992 0|0:43:7,3,33:7:279:3,33:120,1316:-106.267,-98.4885,-120.561,0,-13.0889,-13.0406 0|0:54:22,5,27:22:858:5,27:182,1064:-80.9348,-72.6975,-141.712,0,-55.6831,-62.4151 dDocent_Contig_4723 8 . G T 87.2175 . AB=0.152174;ABP=51.3492;AC=1;AF=0.166667;AN=6;AO=18;CIGAR=1X;DP=229;DPB=229;DPRA=0;EPP=42.0968;EPPR=459.02;GTI=0;LEN=1;MEANALT=1.33333;MQM=60;MQMR=59.6667;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=693;QR=8006;RO=210;RPL=0;RPP=42.0968;RPPR=459.02;RPR=18;RUN=1;SAF=18;SAP=42.0968;SAR=0;SRF=210;SRP=459.02;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:116:106,9:106:4068:9:350:0,-3.12875,-334.104 0/1:46:39,7:39:1500:7:267:-10.5457,0,-121.428 0/0:67:65,2:65:2438:2:76:0,-12.9543,-212.41 dDocent_Contig_4724 77 . G A 1964.46 . AB=0.1;ABP=183.677;AC=1;AF=0.166667;AN=6;AO=13;CIGAR=1X3M1X3M;DP=130;DPB=130;DPRA=0;EPP=31.2394;EPPR=74.6689;GTI=0;LEN=1;MEANALT=3.66667;MQM=60;MQMR=60;NS=3;NUMALT=3;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=444;QR=1121;RO=33;RPL=13;RPP=31.2394;RPPR=74.6689;RPR=0;RUN=1;SAF=13;SAP=31.2394;SAR=0;SRF=33;SRP=74.6689;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|0:70:24,9,0,36:24:810:9,0,36:305,0,1229:-92.5316,-75.0245,-137.968,-99.7564,-140.677,-165.408,0,-40.935,-65.6691,-54.832 1|0:19:2,2,2,11:2:68:2,2,11:69,61,384:-30.7586,-25.7531,-30.6683,-26.4772,-26.3867,-31.3918,-0.0914614,0,-0.732122,-2.30689 0|0:41:7,2,3,29:7:243:2,3,29:70,99,993:-78.5034,-74.9146,-94.0682,-72.6072,-86.6668,-91.4595,0,-14.0632,-11.7599,-11.0301 dDocent_Contig_4725 32 . T A 38.7566 . AB=0.15;ABP=24.2907;AC=0;AF=0;AN=6;AO=3;CIGAR=4X;DP=56;DPB=56;DPRA=1.11111;EPP=9.52472;EPPR=107.241;GTI=0;LEN=1;MEANALT=2;MQM=16;MQMR=60;NS=3;NUMALT=2;ODDS=0;PAIRED=0;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=121;QR=1874;RO=48;RPL=0;RPP=9.52472;RPPR=107.241;RPR=3;RUN=1;SAF=3;SAP=9.52472;SAR=0;SRF=48;SRP=107.241;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|0:18:18,0,0:18:697:0,0:0,0:0,-5.41854,-63.0598,-5.41854,-63.0598,-63.0598 0|0:18:16,0,1:16:629:0,1:0,41:0,-4.81648,-56.5456,-1.42745,-53.1606,-52.8596 0|0:20:14,3,3:14:548:3,3:121,119:-5.69946,-6.6194,-50.7712,0,-41.8777,-44.3465 dDocent_Contig_4726 18 . G A 954.72 . AB=0.625;ABP=9.52472;AC=4;AF=0.666667;AN=6;AO=30;CIGAR=1X3M;DP=48;DPB=48;DPRA=0;EPP=68.1545;EPPR=33.4109;GTI=0;LEN=1;MEANALT=1.33333;MQM=60;MQMR=60;NS=3;NUMALT=2;ODDS=3.46945e-18;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=1175;QR=530;RO=14;RPL=0;RPP=68.1545;RPPR=33.4109;RPR=30;RUN=1;SAF=30;SAP=68.1545;SAR=0;SRF=14;SRP=33.4109;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|1:22:7,0,15:7:275:0,15:0,585:-46.3636,-48.4708,-71.0904,0,-23.0112,-18.4957 0|1:12:5,0,7:5:189:0,7:0,268:-20.8685,-22.3736,-37.8625,0,-15.8686,-13.7614 1|1:14:2,4,8:2:66:4,8:159,322:-33.7628,-21.2756,-25.3917,-7.82353,0,-10.7275 dDocent_Contig_4727 14 . A C 234.594 . AB=0.261905;ABP=23.691;AC=3;AF=0.5;AN=6;AO=11;CIGAR=2M1X4M;DP=42;DPB=41.1429;DPRA=0;EPP=26.8965;EPPR=63.8115;GTI=0;LEN=1;MEANALT=1.33333;MQM=60;MQMR=60;NS=3;NUMALT=2;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=443;QR=1097;RO=28;RPL=0;RPP=26.8965;RPPR=63.8115;RPR=11;RUN=1;SAF=11;SAP=26.8965;SAR=0;SRF=28;SRP=63.8115;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|1:16:7,3,6:7:273:3,6:106,243:-17.9645,-11.4576,-32.985,0,-13.8438,-20.6579 0|1:17:15,0,2:15:584:0,2:0,78:-2.28527,-6.80072,-54.7919,0,-48.3807,-47.7787 0|1:9:6,0,3:6:240:0,3:0,122:-8.66322,-10.4694,-30.2349,0,-20.1695,-19.2664 dDocent_Contig_4728 113 . A G 275.358 . AB=0.278689;ABP=28.9612;AC=2;AF=0.333333;AN=6;AO=18;CIGAR=1X2M1X1M1X3M1X;DP=76;DPB=76;DPRA=0;EPP=42.0968;EPPR=128.956;GTI=0;LEN=1;MEANALT=1;MQM=35.6111;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=0;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=622;QR=1990;RO=58;RPL=0;RPP=42.0968;RPPR=128.956;RPR=18;RUN=1;SAF=0;SAP=42.0968;SAR=18;SRF=0;SRP=128.956;SRR=58;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|1:51:37,14:37:1274:14:482:-24.9797,0,-99.61 0|1:10:7,3:7:239:3:105:-6.07895,0,-18.8338 0|0:15:14,1:14:477:1:35:0,-1.26929,-40.0094 dDocent_Contig_4729 7 . A G 137.475 . AB=0.133333;ABP=125.626;AC=1;AF=0.166667;AN=6;AO=22;CIGAR=1X;DP=355;DPB=355;DPRA=0;EPP=50.7827;EPPR=702.224;GTI=0;LEN=1;MEANALT=2;MQM=60;MQMR=58.4783;NS=3;NUMALT=1;ODDS=1.38778e-17;PAIRED=1;PAIREDR=0.913043;PAO=0;PQA=0;PQR=0;PRO=0;QA=776;QR=12233;RO=322;RPL=0;RPP=50.7827;RPPR=702.224;RPR=22;RUN=1;SAF=22;SAP=50.7827;SAR=0;SRF=322;SRP=702.224;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:186:173,7:173:6562:7:230:0,-33.5146,-568.415 0/0:64:63,1:63:2410:1:39:0,-15.3694,-211.183 0/1:105:86,14:86:3261:14:507:-15.5714,0,-263.041 dDocent_Contig_4730 9 . G A 3500.05 . AB=0.207657;ABP=642.904;AC=3;AF=0.5;AN=6;AO=179;CIGAR=1X;DP=862;DPB=862;DPRA=0;EPP=391.704;EPPR=1486.13;GTI=0;LEN=1;MEANALT=1;MQM=59.6536;MQMR=59.899;NS=3;NUMALT=1;ODDS=5.55112e-17;PAIRED=0.782123;PAIREDR=0.970717;PAO=0;PQA=0;PQR=0;PRO=0;QA=6831;QR=25850;RO=683;RPL=0;RPP=391.704;RPPR=1486.13;RPR=179;RUN=1;SAF=179;SAP=391.704;SAR=0;SRF=683;SRP=1486.13;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:318:264,54:264:10038:54:2084:-92.0594,0,-807.298 0/1:174:143,31:143:5420:31:1176:-53.3331,0,-435.423 0/1:370:276,94:276:10392:94:3571:-210.135,0,-822.115 dDocent_Contig_4732 7 . A T 271.901 . AB=0.128631;ABP=291.708;AC=3;AF=0.5;AN=6;AO=31;CIGAR=1X;DP=241;DPB=241;DPRA=0;EPP=70.3259;EPPR=459.02;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=1.38778e-17;PAIRED=0.967742;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=1158;QR=8002;RO=210;RPL=0;RPP=70.3259;RPPR=459.02;RPR=31;RUN=1;SAF=31;SAP=70.3259;SAR=0;SRF=210;SRP=459.02;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:111:99,12:99:3757:12:460:-8.33628,0,-304.832 0/1:56:46,10:46:1769:10:373:-17.0605,0,-142.608 0/1:74:65,9:65:2476:9:325:-7.31618,0,-200.773 dDocent_Contig_4734 13 . C G 70.5006 . AB=0;ABP=0;AC=0;AF=0;AN=6;AO=3;CIGAR=2M1X2M1X7M;DP=175;DPB=174.077;DPRA=0.428571;EPP=9.52472;EPPR=346.103;GTI=0;LEN=1;MEANALT=2;MQM=60;MQMR=60;NS=3;NUMALT=4;ODDS=6.93889e-18;PAIRED=0;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=115;QR=6243;RO=158;RPL=0;RPP=9.52472;RPPR=346.103;RPR=3;RUN=1;SAF=3;SAP=9.52472;SAR=0;SRF=158;SRP=346.103;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|0:105:102,0,3,0,0:102:4034:0,3,0,0:0,121,0,0:0,-30.7051,-362.677,-20.328,-352.703,-351.8,-30.7051,-362.677,-352.703,-362.677,-30.7051,-362.677,-352.703,-362.677,-362.677 0|0:45:41,3,1,0,0:41:1616:3,1,0,0:115,39,0,0:0,-2.90843,-134.957,-9.1347,-132.655,-141.792,-12.3422,-135.86,-142.093,-145.298,-12.3422,-135.86,-142.093,-145.298,-145.298 0|0:25:15,0,4,2,4:15:593:0,4,2,4:0,153,75,162:-8.85265,-13.3681,-62.1703,-0.821332,-49.6206,-48.4165,-7.23397,-56.034,-43.4849,-55.4319,0,-48.81,-36.2602,-42.6738,-47.6058 dDocent_Contig_4735 54 . C A 14829.1 . AB=0;ABP=0;AC=6;AF=1;AN=6;AO=442;CIGAR=1X;DP=462;DPB=462;DPRA=0;EPP=962.801;EPPR=46.4397;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=1.38778e-17;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=17285;QR=796;RO=20;RPL=442;RPP=962.801;RPPR=46.4397;RPR=0;RUN=1;SAF=442;SAP=962.801;SAR=0;SRF=20;SRP=46.4397;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 1/1:186:7,179:7:275:179:7047:-608.827,-30.8735,0 1/1:132:10,122:10:399:122:4739:-390.192,-3.46676,0 1/1:144:3,141:3:122:141:5499:-483.415,-31.9758,0 dDocent_Contig_4736 24 . G A 12260.4 . AB=0.799587;ABP=380.326;AC=3;AF=0.5;AN=6;AO=387;CIGAR=1X;DP=484;DPB=484;DPRA=0;EPP=843.37;EPPR=213.643;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=15307;QR=3796;RO=97;RPL=0;RPP=843.37;RPPR=213.643;RPR=387;RUN=1;SAF=387;SAP=843.37;SAR=0;SRF=97;SRP=213.643;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:260:49,211:49:1928:211:8362:-673.848,0,-95.4537 0/1:102:14,88:14:544:88:3466:-281.282,0,-18.5932 0/1:122:34,88:34:1324:88:3479:-276.433,0,-82.6975 dDocent_Contig_4737 34 . A T 261.141 . AB=0.129412;ABP=205.8;AC=2;AF=0.333333;AN=6;AO=27;CIGAR=1X;DP=234;DPB=234;DPRA=0;EPP=61.6401;EPPR=452.505;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=1081;QR=8159;RO=207;RPL=0;RPP=61.6401;RPPR=452.505;RPR=27;RUN=1;SAF=27;SAP=61.6401;SAR=0;SRF=207;SRP=452.505;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:115:100,15:100:3946:15:606:-20.2602,0,-320.524 0/0:64:59,5:59:2318:5:191:0,-1.71092,-191.229 0/1:55:48,7:48:1895:7:284:-9.37676,0,-154.201 dDocent_Contig_4738 12 . G A 1037.01 . AB=0.198795;ABP=133.822;AC=2;AF=0.333333;AN=6;AO=33;CIGAR=1X2M1X;DP=166;DPB=166;DPRA=0;EPP=74.6689;EPPR=257.073;GTI=0;LEN=1;MEANALT=2.33333;MQM=60;MQMR=59.8034;NS=3;NUMALT=2;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=1311;QR=4585;RO=117;RPL=0;RPP=74.6689;RPPR=257.073;RPR=33;RUN=1;SAF=33;SAP=74.6689;SAR=0;SRF=117;SRP=257.073;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|0:91:75,2,13:75:2935:2,13:81,519:-20.1617,-36.0592,-276.769,0,-234.625,-237.391 0|1:43:30,13,0:30:1183:13,0:518,0:-34.0239,0,-93.8104,-43.0548,-97.7238,-140.382 0|1:32:12,18,1:12:467:18,1:712,41:-55.0379,0,-32.9147,-55.2651,-34.9468,-93.2476 dDocent_Contig_4739 85 . A G 2179.78 . AB=0.529412;ABP=4.28764;AC=3;AF=0.5;AN=6;AO=90;CIGAR=1X;DP=170;DPB=170;DPRA=0;EPP=198.443;EPPR=174.557;GTI=0;LEN=1;MEANALT=1.33333;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=1.38778e-17;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=3042;QR=2729;RO=79;RPL=90;RPP=198.443;RPPR=174.557;RPR=0;RUN=1;SAF=90;SAP=198.443;SAR=0;SRF=79;SRP=174.557;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:98:45,52:45:1554:52:1773:-130.332,0,-110.633 0/1:18:7,11:7:244:11:374:-28.57,0,-16.8815 0/1:54:27,27:27:931:27:895:-64.5985,0,-67.8489 dDocent_Contig_4740 121 . C T 1550.59 . AB=0.743902;ABP=45.3805;AC=3;AF=0.5;AN=6;AO=61;CIGAR=1X;DP=82;DPB=82;DPRA=0;EPP=135.47;EPPR=48.6112;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=2048;QR=714;RO=21;RPL=0;RPP=135.47;RPPR=48.6112;RPR=61;RUN=1;SAF=0;SAP=135.47;SAR=61;SRF=0;SRP=48.6112;SRR=21;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:49:13,36:13:445:36:1207:-94.1802,0,-25.628 0/1:18:3,15:3:103:15:510:-40.8051,0,-4.19143 0/1:15:5,10:5:166:10:331:-25.5956,0,-10.7513 dDocent_Contig_4741 8 . C G 1264.84 . AB=0.516484;ABP=3.22506;AC=3;AF=0.5;AN=6;AO=47;CIGAR=1X;DP=91;DPB=91;DPRA=0;EPP=105.07;EPPR=98.5551;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=1760;QR=1688;RO=44;RPL=0;RPP=105.07;RPPR=98.5551;RPR=47;RUN=1;SAF=47;SAP=105.07;SAR=0;SRF=44;SRP=98.5551;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:42:21,21:21:806:21:800:-59.6803,0,-60.2217 0/1:26:15,11:15:579:11:411:-29.5111,0,-44.6255 0/1:23:8,15:8:303:15:549:-42.816,0,-20.7041 dDocent_Contig_4742 20 . C T 48.9346 . AB=0.214286;ABP=12.937;AC=1;AF=0.166667;AN=6;AO=3;CIGAR=1X;DP=32;DPB=32;DPRA=1.55556;EPP=9.52472;EPPR=65.983;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=114;QR=1132;RO=29;RPL=0;RPP=9.52472;RPPR=65.983;RPR=3;RUN=1;SAF=3;SAP=9.52472;SAR=0;SRF=29;SRP=65.983;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:14:11,3:11:442:3:114:-6.41629,0,-35.9203 0/0:13:13,0:13:487:0:0:0,-3.91339,-44.1584 0/0:5:5,0:5:203:0:0:0,-1.50515,-18.6531 dDocent_Contig_4743 61 . T A 142.23 . AB=0.3;ABP=9.95901;AC=1;AF=0.166667;AN=6;AO=9;CIGAR=1X;DP=72;DPB=72;DPRA=1.5;EPP=22.5536;EPPR=139.813;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=348;QR=2509;RO=63;RPL=9;RPP=22.5536;RPPR=139.813;RPR=0;RUN=1;SAF=9;SAP=22.5536;SAR=0;SRF=63;SRP=139.813;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:18:18,0:18:728:0:0:0,-5.41854,-65.8447 0/1:20:14,6:14:560:6:241:-16.0461,0,-44.7225 0/0:34:31,3:31:1221:3:107:0,-0.256228,-100.182 dDocent_Contig_4744 9 . C A 310.378 . AB=0.111111;ABP=62.1226;AC=0;AF=0;AN=6;AO=5;CIGAR=1X2M1X;DP=67;DPB=67;DPRA=0;EPP=13.8677;EPPR=94.2121;GTI=0;LEN=1;MEANALT=2;MQM=60;MQMR=60;NS=3;NUMALT=3;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=189;QR=1643;RO=42;RPL=0;RPP=13.8677;RPPR=94.2121;RPR=5;RUN=1;SAF=5;SAP=13.8677;SAR=0;SRF=42;SRP=94.2121;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|0:22:13,3,0,6:13:503:3,0,6:119,0,238:-15.676,-9.7933,-50.1989,-19.5894,-51.102,-60.8989,0,-31.5095,-41.3074,-39.5012 0|0:22:11,0,4,6:11:426:0,4,6:0,163,239:-16.3883,-19.6996,-54.6971,-6.23767,-41.2447,-40.0406,0,-35.0122,-21.5555,-33.206 0|0:23:18,2,0,3:18:714:2,0,3:70,0,120:-4.49598,-4.24006,-62.411,-9.91452,-63.013,-68.7033,0,-53.1279,-58.8176,-57.9145 dDocent_Contig_4745 28 . C T 2005.88 . AB=0.25;ABP=9.52472;AC=1;AF=0.166667;AN=6;AO=3;CIGAR=1X2M1X;DP=84;DPB=84;DPRA=0;EPP=9.52472;EPPR=39.9253;GTI=0;LEN=1;MEANALT=2;MQM=60;MQMR=60;NS=3;NUMALT=2;ODDS=0;PAIRED=0;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=120;QR=674;RO=17;RPL=0;RPP=9.52472;RPPR=39.9253;RPR=3;RUN=1;SAF=3;SAP=9.52472;SAR=0;SRF=17;SRP=39.9253;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|0:38:10,0,28:10:394:0,28:0,1109:-88.6529,-91.6632,-124.075,0,-32.8062,-24.3774 1|0:12:1,3,8:1:41:3,8:120,318:-32.3701,-22.7852,-25.2676,-6.49127,0,-7.46959 0|0:34:6,0,27:6:239:0,27:0,1057:-85.0876,-86.8938,-106.576,0,-19.6795,-11.5517 dDocent_Contig_4746 64 . T A 336.925 . AB=0.419355;ABP=4.76149;AC=2;AF=0.333333;AN=6;AO=17;CIGAR=1X;DP=95;DPB=95;DPRA=0;EPP=39.9253;EPPR=172.385;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=58.8718;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=0.974359;PAO=0;PQA=0;PQR=0;PRO=0;QA=672;QR=3112;RO=78;RPL=17;RPP=39.9253;RPPR=172.385;RPR=0;RUN=1;SAF=17;SAP=39.9253;SAR=0;SRF=78;SRP=172.385;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:64:60,4:60:2408:4:163:0,-4.20749,-197.306 0/1:14:7,7:7:275:7:280:-21.3573,0,-20.9011 0/1:17:11,6:11:429:6:229:-15.858,0,-33.8481 dDocent_Contig_4748 8 . G C 10771.4 . AB=0.0221729;ABP=1791.81;AC=3;AF=0.5;AN=6;AO=20;CIGAR=1X5M2X;DP=902;DPB=902.5;DPRA=0;EPP=46.4397;EPPR=654.452;GTI=0;LEN=1;MEANALT=9;MQM=60;MQMR=60;NS=3;NUMALT=5;ODDS=0;PAIRED=1;PAIREDR=0.886667;PAO=0;PQA=0;PQR=0;PRO=0;QA=754;QR=11690;RO=300;RPL=0;RPP=46.4397;RPPR=654.452;RPR=20;RUN=1;SAF=20;SAP=46.4397;SAR=0;SRF=300;SRP=654.452;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|1:432:163,33,18,158,1,46:163:6364:33,18,158,1,46:1304,682,5974,34,1859:-440.397,-382.156,-895.378,-433.552,-849.4,-951.288,0,-415.854,-467.25,-475.599,-486.707,-902.554,-953.949,-520.404,-1009.56,-336.197,-752.047,-803.442,-369.896,-856.597,-845.507 0|1:174:38,0,17,85,14,12:38:1496:0,17,85,14,12:0,628,3211,531,483:-251.757,-263.196,-386.273,-211.83,-334.908,-329.79,0,-123.09,-71.7237,-97.5021,-219.655,-342.733,-291.367,-79.5475,-338.518,-223.386,-346.464,-295.098,-83.2772,-302.923,-342.852 0|1:296:99,6,16,136,5,21:99:3830:6,16,136,5,21:232,615,5129,189,826:-390.509,-401.255,-714.03,-369.821,-665.348,-679.586,0,-295.529,-264.095,-273.644,-404.818,-700.344,-668.911,-299.092,-717.894,-352.366,-647.893,-616.459,-246.64,-651.456,-660.627 dDocent_Contig_4749 10 . G A 2743.98 . AB=0.248447;ABP=268.483;AC=3;AF=0.5;AN=6;AO=120;CIGAR=1X;DP=483;DPB=483;DPRA=0;EPP=263.587;EPPR=791.255;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=4718;QR=14232;RO=363;RPL=0;RPP=263.587;RPPR=791.255;RPR=120;RUN=1;SAF=120;SAP=263.587;SAR=0;SRF=363;SRP=791.255;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:295:213,82:213:8332:82:3230:-201.975,0,-660.662 0/1:41:36,5:36:1400:5:161:-2.45676,0,-113.92 0/1:147:114,33:114:4500:33:1327:-75.4415,0,-360.696 dDocent_Contig_4750 19 . T G 202.175 . AB=0.131387;ABP=164.698;AC=2;AF=0.333333;AN=6;AO=21;CIGAR=1X;DP=267;DPB=267;DPRA=0;EPP=48.6112;EPPR=537.193;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=836;QR=9860;RO=246;RPL=0;RPP=48.6112;RPPR=537.193;RPR=21;RUN=1;SAF=21;SAP=48.6112;SAR=0;SRF=246;SRP=537.193;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:130:127,3:127:5058:3:122:0,-27.7614,-443.71 0/1:57:49,8:49:1966:8:315:-11.5544,0,-159.978 0/1:80:70,10:70:2836:10:399:-12.1859,0,-231.248 dDocent_Contig_4751 10 . A G 7328.61 . AB=0.656593;ABP=80.539;AC=3;AF=0.5;AN=6;AO=239;CIGAR=1X;DP=364;DPB=364;DPRA=0;EPP=521.992;EPPR=252.803;GTI=0;LEN=1;MEANALT=1.33333;MQM=58.8368;MQMR=59.2185;NS=3;NUMALT=1;ODDS=0;PAIRED=0.924686;PAIREDR=0.865546;PAO=0;PQA=0;PQR=0;PRO=0;QA=9454;QR=4732;RO=119;RPL=0;RPP=521.992;RPPR=261.416;RPR=239;RUN=1;SAF=239;SAP=521.992;SAR=0;SRF=118;SRP=252.803;SRR=1;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:173:56,111:56:2223:111:4395:-343.371,0,-149.659 0/1:71:25,46:25:997:46:1822:-142.772,0,-68.6427 0/1:120:38,82:38:1512:82:3237:-252.241,0,-99.7414 dDocent_Contig_4752 10 . G A 3949.48 . AB=0.230769;ABP=256.738;AC=3;AF=0.5;AN=6;AO=93;CIGAR=1X1M;DP=403;DPB=403;DPRA=0;EPP=204.957;EPPR=389.532;GTI=0;LEN=1;MEANALT=2.33333;MQM=60;MQMR=60;NS=3;NUMALT=2;ODDS=5.55112e-17;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=3706;QR=7054;RO=178;RPL=0;RPP=204.957;RPPR=389.532;RPR=93;RUN=1;SAF=93;SAP=204.957;SAR=0;SRF=178;SRP=389.532;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|1:216:79,87,49:79:3138:87,49:3476,1951:-262.502,0,-232.138,-125.647,-97.6903,-369.224 0|1:84:37,20,27:37:1465:20,27:796,1075:-77.3764,-22.9737,-137.522,0,-55.027,-112.441 0|1:103:62,24,17:62:2451:24,17:962,680:-60.5924,0,-194.456,-23.2449,-145.668,-219.808 dDocent_Contig_4753 10 . C T 1223.62 . AB=0.230769;ABP=19.3799;AC=0;AF=0;AN=6;AO=6;CIGAR=2X;DP=108;DPB=108;DPRA=0;EPP=3.0103;EPPR=126.784;GTI=0;LEN=1;MEANALT=2;MQM=40.5;MQMR=60;NS=3;NUMALT=2;ODDS=0;PAIRED=0;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=223;QR=2250;RO=57;RPL=0;RPP=16.0391;RPPR=126.784;RPR=6;RUN=1;SAF=3;SAP=3.0103;SAR=3;SRF=57;SRP=126.784;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|0:59:35,0,24:35:1377:0,24:0,947:-67.7716,-78.3076,-191.568,0,-113.654,-106.43 0|0:26:10,6,10:10:403:6,10:223,391:-29.1603,-15.1436,-46.5606,0,-16.2281,-30.2404 0|0:23:12,0,11:12:470:0,11:0,417:-30.9531,-34.5655,-73.2115,0,-39.0308,-35.7194 dDocent_Contig_4754 89 . A G 1558.46 . AB=0.264026;ABP=149.56;AC=3;AF=0.5;AN=6;AO=80;CIGAR=1X;DP=303;DPB=303;DPRA=0;EPP=176.728;EPPR=487.249;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=2796;QR=7687;RO=223;RPL=80;RPP=176.728;RPPR=487.249;RPR=0;RUN=1;SAF=80;SAP=176.728;SAR=0;SRF=223;SRP=487.249;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:148:100,48:100:3506:48:1683:-107.204,0,-271.204 0/1:55:38,17:38:1307:17:602:-37.9534,0,-101.37 0/1:100:85,15:85:2874:15:511:-16.2117,0,-228.803 dDocent_Contig_4755 55 . T A 650.793 . AB=0.201183;ABP=134.082;AC=3;AF=0.5;AN=6;AO=34;CIGAR=1X;DP=169;DPB=169;DPRA=0;EPP=76.8404;EPPR=279.045;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=59.2889;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=0.977778;PAO=0;PQA=0;PQR=0;PRO=0;QA=1338;QR=5295;RO=135;RPL=34;RPP=76.8404;RPPR=296.159;RPR=0;RUN=1;SAF=34;SAP=76.8404;SAR=0;SRF=133;SRP=279.045;SRR=2;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:58:49,9:49:1900:9:347:-14.1256,0,-153.755 0/1:70:50,20:50:1986:20:790:-50.3482,0,-157.862 0/1:41:36,5:36:1409:5:201:-6.12829,0,-109.951 dDocent_Contig_4756 107 . N T 218.025 . AB=0;ABP=0;AC=4;AF=1;AN=4;AO=10;CIGAR=1X;DP=10;DPB=10;DPRA=0;EPP=24.725;EPPR=0;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=0;NS=2;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=234;QR=0;RO=0;RPL=0;RPP=24.725;RPPR=0;RPR=10;RUN=1;SAF=0;SAP=24.725;SAR=10;SRF=0;SRP=0;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 1/1:2:0,2:0:0:2:41:-3.89396,-0.60206,0 1/1:8:0,8:0:0:8:193:-17.607,-2.40824,0 ./.:.:.:.:.:.:.:. dDocent_Contig_4757 8 . G A 544.465 . AB=0.0454545;ABP=200.417;AC=1;AF=0.166667;AN=6;AO=5;CIGAR=1X2M1X4M1D1M1X2M1X;DP=173;DPB=172.214;DPRA=0;EPP=13.8677;EPPR=155.013;GTI=0;LEN=1;MEANALT=13;MQM=60;MQMR=59.5429;NS=3;NUMALT=9;ODDS=0;PAIRED=1;PAIREDR=0.928571;PAO=0;PQA=0;PQR=0;PRO=0;QA=180;QR=2742;RO=70;RPL=0;RPP=13.8677;RPPR=155.013;RPR=5;RUN=1;SAF=5;SAP=13.8677;SAR=0;SRF=70;SRP=155.013;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|0:63:26,0,0,2,0,15,0,0,7,2:26:1014:0,0,2,0,15,0,0,7,2:0,0,75,0,593,0,0,270,82:-40.9782,-48.8049,-132.154,-48.8049,-132.154,-132.154,-42.6624,-126.012,-126.012,-125.409,-48.8049,-132.154,-132.154,-126.012,-132.154,0,-83.3523,-83.3523,-77.2096,-83.3523,-78.8369,-48.8049,-132.154,-132.154,-126.012,-132.154,-83.3523,-132.154,-48.8049,-132.154,-132.154,-126.012,-132.154,-83.3523,-132.154,-132.154,-26.7408,-110.09,-110.09,-103.947,-110.09,-61.2878,-110.09,-110.09,-107.983,-42.0355,-125.386,-125.386,-119.243,-125.386,-76.5832,-125.386,-125.386,-103.321,-124.783 0|0:47:19,0,0,3,3,4,3,2,4,1:19:748:0,0,3,3,4,3,2,4,1:0,0,105,115,160,54,79,158,41:-7.46741,-13.187,-74.7361,-13.187,-74.7361,-74.7361,-4.6484,-66.1979,-66.1979,-65.2948,-3.7454,-65.2966,-65.2966,-56.7585,-64.3935,0,-61.5533,-61.5533,-53.0151,-52.1136,-60.3492,-10.0586,-71.5978,-71.5978,-63.0609,-62.1594,-58.4164,-70.6947,-6.6837,-68.2345,-68.2345,-59.6964,-58.795,-55.0515,-65.0969,-67.6325,-0.204444,-61.7573,-61.7573,-53.2192,-52.3177,-48.5741,-58.6204,-55.2556,-60.5532,-9.80106,-71.3512,-71.3512,-62.813,-61.9117,-58.1683,-68.2132,-64.8496,-58.3723,-71.0502 0|1:63:25,4,6,0,0,3,0,5,5,4:25:980:4,6,0,0,3,0,5,5,4:150,231,0,0,112,0,201,197,162:-11.441,-6.87243,-86.0269,0,-68.2645,-78.5532,-18.9667,-87.231,-80.3594,-99.326,-18.9667,-87.231,-80.3594,-99.326,-99.326,-9.7987,-78.0627,-71.1911,-90.1576,-90.1576,-89.2545,-18.9667,-87.231,-80.3594,-99.326,-99.326,-90.1576,-99.326,-2.40059,-70.6661,-63.7943,-82.761,-82.761,-73.5926,-82.761,-81.2559,-2.81143,-71.0764,-64.2046,-83.1713,-83.1713,-74.0029,-83.1713,-66.6062,-81.6661,-5.60646,-73.8718,-67,-85.9668,-85.9668,-76.7984,-85.9668,-69.4016,-69.8119,-84.7627 dDocent_Contig_4758 7 . A C 92.002 . AB=0.129412;ABP=104.405;AC=1;AF=0.166667;AN=6;AO=17;CIGAR=1X;DP=280;DPB=280;DPRA=0;EPP=39.9253;EPPR=574.108;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=6.93889e-18;PAIRED=1;PAIREDR=0.859316;PAO=0;PQA=0;PQR=0;PRO=0;QA=627;QR=9969;RO=263;RPL=0;RPP=39.9253;RPPR=574.108;RPR=17;RUN=1;SAF=17;SAP=39.9253;SAR=0;SRF=263;SRP=574.108;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:115:112,3:112:4283:3:110:0,-24.3583,-375.285 0/0:80:77,3:77:2898:3:114:0,-13.4502,-250.375 0/1:85:74,11:74:2788:11:403:-11.0241,0,-225.519 dDocent_Contig_4760 10 . C T 1912.52 . AB=0.666667;ABP=25.4488;AC=3;AF=0.5;AN=6;AO=62;CIGAR=1X;DP=93;DPB=93;DPRA=0;EPP=137.642;EPPR=70.3259;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=6.93889e-18;PAIRED=1;PAIREDR=0.903226;PAO=0;PQA=0;PQR=0;PRO=0;QA=2487;QR=1250;RO=31;RPL=0;RPP=137.642;RPPR=70.3259;RPR=62;RUN=1;SAF=62;SAP=137.642;SAR=0;SRF=31;SRP=70.3259;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:71:14,57:14:564:57:2288:-184.707,0,-29.7284 0/1:10:7,3:7:280:3:117:-7.89991,0,-22.561 0/1:12:10,2:10:406:2:82:-4.16732,0,-33.2877 dDocent_Contig_4761 53 . T C 103.316 . AB=0.179487;ABP=37.8095;AC=2;AF=0.333333;AN=6;AO=7;CIGAR=1X;DP=45;DPB=45;DPRA=3.25;EPP=18.2106;EPPR=85.5263;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=276;QR=1499;RO=38;RPL=7;RPP=18.2106;RPPR=85.5263;RPR=0;RUN=1;SAF=7;SAP=18.2106;SAR=0;SRF=38;SRP=85.5263;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:20:16,4:16:630:4:163:-9.03783,0,-51.0135 0/1:19:16,3:16:632:3:113:-4.81645,0,-51.4952 0/0:6:6,0:6:237:0:0:0,-1.80618,-21.7031 dDocent_Contig_4762 32 . C A 218.201 . AB=0.0869565;ABP=71.1757;AC=0;AF=0;AN=6;AO=4;CIGAR=1M1X5M1X;DP=88;DPB=87.25;DPRA=3.06667;EPP=11.6962;EPPR=157.185;GTI=0;LEN=1;MEANALT=2;MQM=60;MQMR=60;NS=3;NUMALT=3;ODDS=6.93889e-18;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=156;QR=2815;RO=71;RPL=0;RPP=11.6962;RPPR=157.185;RPR=4;RUN=1;SAF=4;SAP=11.6962;SAR=0;SRF=71;SRP=157.185;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|0:46:32,4,0,10:32:1264:4,0,10:156,0,396:-22.9622,-19.7742,-122.574,-32.5952,-123.778,-136.601,0,-91.1872,-104.009,-100.999 0|0:15:15,0,0,0:15:603:0,0,0:0,0,0:0,-4.51545,-54.6096,-4.51545,-54.6096,-54.6096,-4.51545,-54.6096,-54.6096,-54.6096 0|0:27:24,0,3,0:24:948:0,3,0:0,112,0:-2.31591,-9.54063,-87.5664,0,-78.4012,-77.4981,-9.54063,-87.5664,-78.4012,-87.5664 dDocent_Contig_4763 161 . G A 1063.19 . AB=0.340909;ABP=32.0291;AC=3;AF=0.5;AN=6;AO=45;CIGAR=1X;DP=132;DPB=132;DPRA=0;EPP=100.727;EPPR=191.928;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=1673;QR=3356;RO=87;RPL=45;RPP=100.727;RPPR=191.928;RPR=0;RUN=1;SAF=0;SAP=100.727;SAR=45;SRF=0;SRP=191.928;SRR=87;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:69:46,23:46:1768:23:858:-56.7647,0,-138.549 0/1:45:38,7:38:1468:7:269:-11.0284,0,-118.82 0/1:18:3,15:3:120:15:546:-44.0493,0,-5.76915 dDocent_Contig_4764 38 . A G 2851.61 . AB=0.38189;ABP=33.7871;AC=2;AF=0.333333;AN=6;AO=97;CIGAR=1M1I1M1X2M1X;DP=254;DPB=280;DPRA=0;EPP=213.643;EPPR=215.815;GTI=0;LEN=1;MEANALT=2;MQM=60;MQMR=60;NS=3;NUMALT=2;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=3741;QR=3777;RO=98;RPL=0;RPP=213.643;RPPR=215.815;RPR=97;RUN=1;SAF=97;SAP=213.643;SAR=0;SRF=98;SRP=215.815;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|1:188:68,80,40:68:2613:80,40:3091,1499:-233.39,0,-190.407,-131.106,-91.7346,-333.547 0|0:29:17,4,8:17:656:4,8:156,314:-20.7091,-13.0041,-65.6639,0,-41.041,-51.4569 0|1:37:13,13,11:13:508:13,11:494,441:-36.5846,0,-37.844,-4.15415,-5.41844,-42.611 dDocent_Contig_4765 8 . A G 1944.84 . AB=0.758242;ABP=55.7222;AC=3;AF=0.5;AN=6;AO=69;CIGAR=1X;DP=91;DPB=91;DPRA=0;EPP=152.842;EPPR=17.2236;GTI=0;LEN=1;MEANALT=1;MQM=45.058;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=0.727273;PAO=0;PQA=0;PQR=0;PRO=0;QA=2635;QR=820;RO=22;RPL=0;RPP=152.842;RPPR=50.7827;RPR=69;RUN=1;SAF=69;SAP=152.842;SAR=0;SRF=17;SRP=17.2236;SRR=5;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:48:10,38:10:382:38:1440:-109.144,0,-20.2857 0/1:25:7,18:7:264:18:691:-52.0045,0,-16.5938 0/1:18:5,13:5:174:13:504:-38.8578,0,-10.5828 dDocent_Contig_4766 8 . G A 3489.7 . AB=0.568807;ABP=11.9751;AC=3;AF=0.5;AN=6;AO=124;CIGAR=1X;DP=218;DPB=218;DPRA=0;EPP=272.273;EPPR=207.129;GTI=0;LEN=1;MEANALT=1;MQM=59.9758;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=4659;QR=3568;RO=94;RPL=0;RPP=272.273;RPPR=207.129;RPR=124;RUN=1;SAF=124;SAP=272.273;SAR=0;SRF=94;SRP=207.129;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:137:62,75:62:2349:75:2824:-213.101,0,-170.383 0/1:33:16,17:16:604:17:649:-48.8125,0,-44.7568 0/1:48:16,32:16:615:32:1186:-92.5802,0,-41.2405 dDocent_Contig_4767 12 . G A 41.4798 . AB=0.666667;ABP=3.73412;AC=1;AF=0.25;AN=4;AO=2;CIGAR=1X1M1X;DP=5;DPB=5.66667;DPRA=1.5;EPP=7.35324;EPPR=9.52472;GTI=0;LEN=1;MEANALT=1;MQM=39;MQMR=16.6667;NS=2;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=0.333333;PAO=0;PQA=0;PQR=0;PRO=0;QA=81;QR=109;RO=3;RPL=0;RPP=7.35324;RPPR=9.52472;RPR=2;RUN=1;SAF=2;SAP=7.35324;SAR=0;SRF=3;SRP=9.52472;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|0:2:2,0:2:72:0:0:0,-0.60206,-1.32856 0|1:3:1,2:1:37:2:81:-6.06393,0,-2.44306 .:.:.:.:.:.:.:. dDocent_Contig_4769 207 . G C 143.453 . AB=0.152;ABP=134.497;AC=3;AF=0.5;AN=6;AO=19;CIGAR=1X;DP=125;DPB=125;DPRA=0;EPP=44.2683;EPPR=233.186;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=628;QR=4266;RO=106;RPL=19;RPP=44.2683;RPPR=233.186;RPR=0;RUN=1;SAF=0;SAP=44.2683;SAR=19;SRF=0;SRP=233.186;SRR=106;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:51:43,8:43:1736:8:250:-7.4537,0,-141.1 0/1:38:32,6:32:1275:6:201:-6.97852,0,-103.581 0/1:36:31,5:31:1255:5:177:-5.43594,0,-102.377 dDocent_Contig_4770 80 . C A 5563.52 . AB=0.773585;ABP=140.837;AC=4;AF=0.666667;AN=6;AO=205;CIGAR=1X;DP=256;DPB=256;DPRA=0;EPP=448.162;EPPR=113.755;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=1.38778e-17;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=7031;QR=1778;RO=51;RPL=205;RPP=448.162;RPPR=113.755;RPR=0;RUN=1;SAF=205;SAP=448.162;SAR=0;SRF=51;SRP=113.755;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:151:38,113:38:1324:113:3898:-305.578,0,-74.0074 1/1:44:3,41:3:106:41:1408:-117.127,-3.35622,0 0/1:61:10,51:10:348:51:1725:-137.17,0,-13.2932 dDocent_Contig_4771 19 . T G 1091.46 . AB=0.265537;ABP=87.526;AC=3;AF=0.5;AN=6;AO=47;CIGAR=1X;DP=177;DPB=177;DPRA=0;EPP=105.07;EPPR=285.302;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=0.984615;PAO=0;PQA=0;PQR=0;PRO=0;QA=1855;QR=4880;RO=130;RPL=0;RPP=105.07;RPPR=285.302;RPR=47;RUN=1;SAF=47;SAP=105.07;SAR=0;SRF=130;SRP=285.302;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:82:53,29:53:1980:29:1150:-79.0946,0,-153.748 0/1:68:55,13:55:2093:13:502:-25.0485,0,-168.129 0/1:27:22,5:22:807:5:203:-10.5252,0,-64.8094 dDocent_Contig_4772 7 . A G 306.777 . AB=0.341463;ABP=11.961;AC=2;AF=0.333333;AN=6;AO=14;CIGAR=1X2M1X1M2X;DP=66;DPB=66;DPRA=0.82;EPP=33.4109;EPPR=98.5551;GTI=0;LEN=1;MEANALT=2;MQM=60;MQMR=60;NS=3;NUMALT=2;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=490;QR=1673;RO=44;RPL=0;RPP=33.4109;RPPR=98.5551;RPR=14;RUN=1;SAF=14;SAP=33.4109;SAR=0;SRF=44;SRP=98.5551;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|0:25:24,0,0:24:903:0,0:0,0:0,-7.22472,-81.2622,-7.22472,-81.2622,-81.2622 0|1:21:7,6,7:7:270:6,7:188,255:-18.7458,-5.76485,-26.1432,0,-7.1273,-20.1003 0|1:20:13,0,7:13:500:0,7:0,235:-15.4547,-19.3681,-60.4484,0,-41.4329,-39.3257 dDocent_Contig_4773 23 . A G 220.45 . AB=0.191781;ABP=63.2463;AC=3;AF=0.5;AN=6;AO=14;CIGAR=1X;DP=73;DPB=73;DPRA=0;EPP=33.4109;EPPR=131.127;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=6.93889e-18;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=538;QR=2366;RO=59;RPL=0;RPP=33.4109;RPPR=131.127;RPR=14;RUN=1;SAF=14;SAP=33.4109;SAR=0;SRF=59;SRP=131.127;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:21:18,3:18:719:3:121:-4.95836,0,-58.7139 0/1:20:17,3:17:689:3:120:-5.16709,0,-56.3185 0/1:32:24,8:24:958:8:297:-17.4422,0,-76.8892 dDocent_Contig_4774 98 . N G 6945.66 . AB=0;ABP=0;AC=6;AF=1;AN=6;AO=236;CIGAR=3X;DP=236;DPB=236;DPRA=0;EPP=515.478;EPPR=0;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=0;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=7702;QR=0;RO=0;RPL=236;RPP=515.478;RPPR=0;RPR=0;RUN=1;SAF=236;SAP=515.478;SAR=0;SRF=0;SRP=0;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 1|1:120:0,120:0:0:120:3923:-353.299,-36.1236,0 1|1:42:0,42:0:0:42:1344:-121.249,-12.6433,0 1|1:74:0,74:0:0:74:2435:-219.416,-22.2762,0 dDocent_Contig_4775 11 . G T 2605.9 . AB=0.697479;ABP=43.3194;AC=3;AF=0.5;AN=6;AO=83;CIGAR=1X;DP=119;DPB=119;DPRA=0;EPP=183.243;EPPR=81.1833;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=6.93889e-18;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=3344;QR=1447;RO=36;RPL=0;RPP=183.243;RPPR=81.1833;RPR=83;RUN=1;SAF=83;SAP=183.243;SAR=0;SRF=36;SRP=81.1833;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:75:22,53:22:892:53:2136:-169.835,0,-58.008 0/1:7:1,6:1:41:6:238:-19.6838,0,-1.98736 0/1:37:13,24:13:514:24:970:-76.4599,0,-35.4668 dDocent_Contig_4777 18 . C G 70.0102 . AB=0.117647;ABP=110.945;AC=2;AF=0.333333;AN=6;AO=11;CIGAR=1X;DP=106;DPB=106;DPRA=0;EPP=26.8965;EPPR=209.3;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=434;QR=3812;RO=95;RPL=0;RPP=26.8965;RPPR=209.3;RPR=11;RUN=1;SAF=11;SAP=26.8965;SAR=0;SRF=95;SRP=209.3;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:64:58,6:58:2345:6:246:-3.2542,0,-191.933 0/0:21:20,1:20:781:1:41:0,-2.22706,-66.5114 0/1:21:17,4:17:686:4:147:-7.2617,0,-55.7477 dDocent_Contig_4778 10 . A T 211.858 . AB=0.16092;ABP=89.8942;AC=2;AF=0.333333;AN=6;AO=14;CIGAR=1X;DP=118;DPB=118;DPRA=1.40323;EPP=33.4109;EPPR=224.5;GTI=0;LEN=1;MEANALT=1.5;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=555;QR=4092;RO=102;RPL=0;RPP=33.4109;RPPR=224.5;RPR=14;RUN=1;SAF=14;SAP=33.4109;SAR=0;SRF=102;SRP=224.5;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:53:43,8:43:1737:8:312:-12.6956,0,-140.804 0/0:31:31,0:31:1240:0:0:0,-9.33193,-111.874 0/1:34:28,6:28:1115:6:243:-12.0132,0,-90.3972 dDocent_Contig_4781 79 . T A 66.0174 . AB=0.205128;ABP=32.4644;AC=3;AF=0.5;AN=6;AO=8;CIGAR=1X;DP=39;DPB=39;DPRA=0;EPP=20.3821;EPPR=70.3259;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=254;QR=1083;RO=31;RPL=8;RPP=20.3821;RPPR=70.3259;RPR=0;RUN=1;SAF=8;SAP=20.3821;SAR=0;SRF=31;SRP=70.3259;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:12:10,2:10:350:2:66:-2.65582,0,-28.2252 0/1:17:13,4:13:454:4:129:-6.81132,0,-36.0758 0/1:10:8,2:8:279:2:59:-2.59354,0,-22.4387 dDocent_Contig_4782 30 . T C 665.124 . AB=0.2;ABP=38.1882;AC=0;AF=0;AN=6;AO=9;CIGAR=2X;DP=97;DPB=97;DPRA=0;EPP=22.5536;EPPR=135.47;GTI=0;LEN=1;MEANALT=2;MQM=60;MQMR=60;NS=3;NUMALT=2;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=356;QR=2385;RO=61;RPL=0;RPP=22.5536;RPPR=135.47;RPR=9;RUN=1;SAF=9;SAP=22.5536;SAR=0;SRF=61;SRP=135.47;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|0:45:25,9,11:25:983:9,11:356,446:-29.259,-7.49329,-85.6241,0,-51.5503,-77.5355 0|0:38:25,0,13:25:965:0,13:0,519:-35.6182,-43.1439,-122.37,0,-79.6208,-75.7074 0|0:14:11,0,3:11:437:0,3:0,122:-7.15807,-10.4694,-46.4374,0,-36.3721,-35.469 dDocent_Contig_4783 71 . C A 5467.37 . AB=0.801325;ABP=122.096;AC=4;AF=0.666667;AN=6;AO=177;CIGAR=1X;DP=211;DPB=211;DPRA=0;EPP=387.361;EPPR=76.8404;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=6759;QR=1291;RO=34;RPL=177;RPP=387.361;RPPR=76.8404;RPR=0;RUN=1;SAF=177;SAP=387.361;SAR=0;SRF=34;SRP=76.8404;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:55:14,41:14:505:41:1531:-121.505,0,-29.2207 0/1:96:16,80:16:643:80:3093:-249.595,0,-29.3059 1/1:60:4,56:4:143:56:2135:-179.16,-4.84131,0 dDocent_Contig_4784 22 . G A 1528.39 . AB=0.434426;ABP=7.56683;AC=3;AF=0.5;AN=6;AO=53;CIGAR=1X2M;DP=122;DPB=122;DPRA=0;EPP=118.098;EPPR=128.956;GTI=0;LEN=1;MEANALT=2.66667;MQM=60;MQMR=47.9483;NS=3;NUMALT=2;ODDS=0;PAIRED=1;PAIREDR=0.758621;PAO=0;PQA=0;PQR=0;PRO=0;QA=2133;QR=2248;RO=58;RPL=0;RPP=118.098;RPPR=128.956;RPR=53;RUN=1;SAF=53;SAP=118.098;SAR=0;SRF=58;SRP=128.956;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|1:61:33,1,26:33:1259:1,26:39,1056:-77.1812,-83.9098,-164.389,0,-77.5522,-72.9336 0|1:24:10,2,11:10:397:2,11:73,438:-33.0709,-30.1226,-59.6715,0,-24.1961,-26.847 0|1:37:15,6,16:15:592:6,16:239,639:-48.1101,-32.9449,-69.5626,0,-18.7024,-33.5895 dDocent_Contig_4785 18 . C G 1208.24 . AB=0.178218;ABP=93.8466;AC=0;AF=0;AN=6;AO=18;CIGAR=3M1X4M;DP=178;DPB=196.375;DPRA=0;EPP=42.0968;EPPR=207.129;GTI=0;LEN=1;MEANALT=3;MQM=60;MQMR=60;NS=3;NUMALT=3;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=668;QR=3644;RO=94;RPL=0;RPP=42.0968;RPPR=207.129;RPR=18;RUN=1;SAF=18;SAP=42.0968;SAR=0;SRF=94;SRP=207.129;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|0:101:45,27,11,18:45:1763:27,11,18:1037,437,668:-71.5796,0,-136.844,-49.1448,-108.993,-190.805,-30.486,-90.3318,-139.475,-170.035 0|0:17:10,6,1,0:10:370:6,1,0:235,40,0:-16.3066,0,-28.4248,-16.0207,-26.9332,-45.9643,-19.3169,-30.231,-46.2653,-49.5616 0|0:60:39,16,5,0:39:1511:16,5,0:612,202,0:-38.4602,0,-119.289,-33.5419,-107.45,-156.16,-50.2004,-124.105,-157.665,-174.32 dDocent_Contig_4786 12 . T A 2792.88 . AB=0.809091;ABP=94.2911;AC=3;AF=0.5;AN=6;AO=89;CIGAR=1X;DP=110;DPB=110;DPRA=0;EPP=196.271;EPPR=48.6112;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=6.93889e-18;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=3522;QR=840;RO=21;RPL=0;RPP=196.271;RPPR=48.6112;RPR=89;RUN=1;SAF=89;SAP=196.271;SAR=0;SRF=21;SRP=48.6112;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:71:13,58:13:528:58:2293:-185.158,0,-26.4938 0/1:19:2,17:2:82:17:666:-54.5503,0,-2.06011 0/1:20:6,14:6:230:14:563:-44.992,0,-15.0438 dDocent_Contig_4787 17 . C T 1477.97 . AB=0.173362;ABP=441.349;AC=3;AF=0.5;AN=6;AO=82;CIGAR=1X;DP=473;DPB=473;DPRA=0;EPP=181.071;EPPR=852.056;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=3276;QR=15654;RO=391;RPL=0;RPP=181.071;RPPR=852.056;RPR=82;RUN=1;SAF=82;SAP=181.071;SAR=0;SRF=391;SRP=852.056;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:233:184,49:184:7379:49:1942:-104.843,0,-593.591 0/1:119:104,15:104:4147:15:608:-19.2357,0,-337.38 0/1:121:103,18:103:4128:18:726:-29.2411,0,-335.057 dDocent_Contig_4788 45 . A G 963.272 . AB=0.38;ABP=15.518;AC=3;AF=0.5;AN=6;AO=38;CIGAR=1X;DP=100;DPB=100;DPRA=0;EPP=85.5263;EPPR=135.47;GTI=0;LEN=1;MEANALT=1.33333;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=1456;QR=2434;RO=61;RPL=0;RPP=85.5263;RPPR=135.47;RPR=38;RUN=1;SAF=38;SAP=85.5263;SAR=0;SRF=61;SRP=135.47;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:58:38,20:38:1515:20:758:-51.0673,0,-119.132 0/1:13:5,8:5:201:8:299:-23.3444,0,-14.5575 0/1:29:18,10:18:718:10:399:-27.4384,0,-56.1172 dDocent_Contig_4789 123 . G C 141.737 . AB=0.163043;ABP=93.7401;AC=2;AF=0.333333;AN=6;AO=16;CIGAR=1X;DP=129;DPB=129;DPRA=0;EPP=37.7539;EPPR=248.387;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=532;QR=3865;RO=113;RPL=0;RPP=37.7539;RPPR=248.387;RPR=16;RUN=1;SAF=0;SAP=37.7539;SAR=16;SRF=0;SRP=248.387;SRR=113;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:76:64,12:64:2208:12:392:-12.7167,0,-176.114 0/1:16:13,3:13:441:3:105:-4.97968,0,-35.199 0/0:37:36,1:36:1216:1:35:0,-7.63948,-106.239 dDocent_Contig_4790 42 . G C 17395.5 . AB=0.773616;ABP=402.278;AC=6;AF=1;AN=6;AO=475;CIGAR=1X1M;DP=614;DPB=614;DPRA=0;EPP=1034.46;EPPR=85.5263;GTI=0;LEN=1;MEANALT=2.33333;MQM=60;MQMR=60;NS=3;NUMALT=2;ODDS=5.55112e-17;PAIRED=0.997895;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=18928;QR=1481;RO=38;RPL=0;RPP=1034.46;RPPR=85.5263;RPR=475;RUN=1;SAF=475;SAP=1034.46;SAR=0;SRF=38;SRP=85.5263;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 1|1:403:24,70,309:24:952:70,309:2723,12351:-1155.42,-938.906,-996.195,-145.372,0,-130.716 1|1:86:7,8,70:7:280:8,70:316,2798:-231.284,-207.389,-228.046,-2.93299,0,-4.92839 1|1:125:7,22,96:7:249:22,96:851,3779:-358.37,-290.589,-304.252,-49.6324,0,-41.0135 dDocent_Contig_4791 19 . C T 244.859 . AB=0.0299401;ABP=323.517;AC=0;AF=0;AN=6;AO=5;CIGAR=1X1M1X;DP=167;DPB=167;DPRA=0;EPP=13.8677;EPPR=285.302;GTI=0;LEN=1;MEANALT=3;MQM=60;MQMR=60;NS=3;NUMALT=2;ODDS=0;PAIRED=1;PAIREDR=0.884615;PAO=0;PQA=0;PQR=0;PRO=0;QA=193;QR=5107;RO=130;RPL=0;RPP=13.8677;RPPR=285.302;RPR=5;RUN=1;SAF=5;SAP=13.8677;SAR=0;SRF=130;SRP=285.302;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|0:103:79,2,16:79:3102:2,16:80,579:-22.8991,-40.0878,-294.616,0,-248.515,-250.289 0|0:29:22,2,5:22:856:2,5:80,157:-5.10734,-5.11018,-74.9306,0,-63.7457,-68.8317 0|0:35:29,1,4:29:1149:1,4:33,113:-0.173724,-6.23172,-100.576,0,-91.9287,-93.3906 dDocent_Contig_4793 8 . G T 45.1082 . AB=0.0789474;ABP=120.041;AC=1;AF=0.166667;AN=6;AO=6;CIGAR=1X2M1X;DP=76;DPB=76;DPRA=0;EPP=16.0391;EPPR=139.813;GTI=0;LEN=1;MEANALT=2;MQM=60;MQMR=60;NS=3;NUMALT=2;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=233;QR=2434;RO=63;RPL=0;RPP=16.0391;RPPR=139.813;RPR=6;RUN=1;SAF=6;SAP=16.0391;SAR=0;SRF=63;SRP=139.813;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|0:51:45,2,4:45:1734:2,4:77,164:-0.00648241,-7.2387,-148.993,0,-136.057,-141.175 0|0:9:7,1,1:7:268:1,1:39,40:-1.19283,-0.0991147,-21.7769,0,-18.7807,-21.6864 0|1:16:11,3,2:11:432:3,2:117,82:-6.29442,0,-34.6143,-2.82967,-28.7465,-37.7615 dDocent_Contig_4795 8 . G A 42.6885 . AB=0.105882;ABP=117.69;AC=1;AF=0.166667;AN=6;AO=17;CIGAR=1X;DP=426;DPB=426;DPRA=0;EPP=39.9253;EPPR=891.143;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=59.9315;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=0.94621;PAO=0;PQA=0;PQR=0;PRO=0;QA=658;QR=15599;RO=409;RPL=0;RPP=39.9253;RPPR=891.143;RPR=17;RUN=1;SAF=17;SAP=39.9253;SAR=0;SRF=409;SRP=891.143;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:210:203,7:203:7728:7:271:0,-38.4599,-670.542 0/1:85:76,9:76:2889:9:348:-6.09274,0,-234.599 0/0:131:130,1:130:4982:1:39:0,-35.5384,-444.502 dDocent_Contig_4796 11 . T A 89.8055 . AB=0.333333;ABP=5.9056;AC=1;AF=0.166667;AN=6;AO=4;CIGAR=2X3M1X;DP=77;DPB=77;DPRA=0.369231;EPP=11.6962;EPPR=161.528;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=0;PAIREDR=0.958904;PAO=0;PQA=0;PQR=0;PRO=0;QA=156;QR=2891;RO=73;RPL=0;RPP=11.6962;RPPR=161.528;RPR=4;RUN=1;SAF=4;SAP=11.6962;SAR=0;SRF=73;SRP=161.528;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|0:37:37,0:37:1482:0:0:0,-11.1381,-133.632 0|1:12:8,4:8:310:4:156:-10.8045,0,-24.651 0|0:28:28,0:28:1099:0:0:0,-8.42884,-99.2051 dDocent_Contig_4797 47 . T G 176.097 . AB=0.107759;ABP=313.044;AC=3;AF=0.5;AN=6;AO=25;CIGAR=1X;DP=232;DPB=232;DPRA=0;EPP=57.2971;EPPR=452.505;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=1005;QR=8246;RO=207;RPL=0;RPP=57.2971;RPPR=452.505;RPR=25;RUN=1;SAF=25;SAP=57.2971;SAR=0;SRF=207;SRP=452.505;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:106:97,9:97:3885:9:357:-0.579417,0,-317.733 0/1:61:52,9:52:2074:9:367:-15.0324,0,-168.486 0/1:65:58,7:58:2287:7:281:-6.09472,0,-186.436 dDocent_Contig_4798 12 . G T 968.752 . AB=0.234375;ABP=120.677;AC=3;AF=0.5;AN=6;AO=45;CIGAR=1X;DP=192;DPB=192;DPRA=0;EPP=100.727;EPPR=322.217;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=59.4898;NS=3;NUMALT=1;ODDS=1.38778e-17;PAIRED=1;PAIREDR=0.972789;PAO=0;PQA=0;PQR=0;PRO=0;QA=1769;QR=5821;RO=147;RPL=0;RPP=100.727;RPPR=322.217;RPR=45;RUN=1;SAF=45;SAP=100.727;SAR=0;SRF=147;SRP=322.217;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:94:84,10:84:3358:10:371:-5.43077,0,-273.97 0/1:50:37,13:37:1458:13:507:-30.9195,0,-114.884 0/1:48:26,22:26:1005:22:891:-66.0477,0,-76.2498 dDocent_Contig_4800 33 . A C 1498.66 . AB=0.345912;ABP=35.8009;AC=3;AF=0.5;AN=6;AO=55;CIGAR=2M1X9M;DP=159;DPB=160.833;DPRA=0;EPP=122.441;EPPR=196.271;GTI=0;LEN=1;MEANALT=3.66667;MQM=60;MQMR=60;NS=3;NUMALT=2;ODDS=0;PAIRED=1;PAIREDR=0.88764;PAO=0;PQA=0;PQR=0;PRO=0;QA=2210;QR=3432;RO=89;RPL=0;RPP=122.441;RPPR=196.271;RPR=55;RUN=1;SAF=55;SAP=122.441;SAR=0;SRF=89;SRP=196.271;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|1:52:20,0,30:20:783:0,30:0,1203:-93.1128,-99.1334,-163.512,0,-64.3923,-55.3614 0|1:66:45,3,14:45:1723:3,14:114,566:-33.159,-37.3578,-177.841,0,-132.074,-137.208 0|1:41:24,3,11:24:926:3,11:115,441:-29.1171,-26.9057,-102.029,0,-66.5942,-72.7214 dDocent_Contig_4801 8 . A G 2693.73 . AB=0.636986;ABP=26.8073;AC=3;AF=0.5;AN=6;AO=93;CIGAR=1X;DP=146;DPB=146;DPRA=0;EPP=204.957;EPPR=42.3836;GTI=0;LEN=1;MEANALT=1;MQM=59.3226;MQMR=60;NS=3;NUMALT=1;ODDS=6.93889e-18;PAIRED=0.967742;PAIREDR=0.641509;PAO=0;PQA=0;PQR=0;PRO=0;QA=3538;QR=1991;RO=53;RPL=0;RPP=204.957;RPPR=118.098;RPR=93;RUN=1;SAF=93;SAP=204.957;SAR=0;SRF=42;SRP=42.3836;SRR=11;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:75:27,48:27:1023:48:1836:-142.453,0,-69.804 0/1:37:13,24:13:480:24:911:-71.1688,0,-32.4029 0/1:34:13,21:13:488:21:791:-61.2742,0,-34.0295 dDocent_Contig_4802 21 . T A 746.145 . AB=0.19;ABP=169.953;AC=2;AF=0.333333;AN=6;AO=39;CIGAR=1X;DP=236;DPB=236;DPRA=0;EPP=87.6977;EPPR=430.79;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=1571;QR=7898;RO=197;RPL=0;RPP=87.6977;RPPR=430.79;RPR=39;RUN=1;SAF=39;SAP=87.6977;SAR=0;SRF=197;SRP=430.79;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:122:96,26:96:3832:26:1044:-57.5259,0,-308.149 0/0:36:35,1:35:1381:1:41:0,-6.74251,-120.451 0/1:78:66,12:66:2685:12:486:-20.6115,0,-218.273 dDocent_Contig_4803 10 . T C 950.769 . AB=0.28777;ABP=57.3908;AC=3;AF=0.5;AN=6;AO=40;CIGAR=1X1M2X;DP=139;DPB=138.75;DPRA=0;EPP=89.8692;EPPR=215.815;GTI=0;LEN=1;MEANALT=1.33333;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=1572;QR=3848;RO=98;RPL=0;RPP=89.8692;RPPR=215.815;RPR=40;RUN=1;SAF=40;SAP=89.8692;SAR=0;SRF=98;SRP=215.815;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|1:66:53,12:53:2101:12:485:-24.0717,0,-169.359 0|1:34:22,12:22:856:12:464:-31.8718,0,-67.1167 0|1:39:23,16:23:891:16:623:-44.6563,0,-68.7567 dDocent_Contig_4804 189 . C A 190.659 . AB=0.174603;ABP=60.9507;AC=2;AF=0.333333;AN=6;AO=11;CIGAR=1X;DP=86;DPB=86;DPRA=1.36957;EPP=26.8965;EPPR=165.871;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=436;QR=2984;RO=75;RPL=11;RPP=26.8965;RPPR=165.871;RPR=0;RUN=1;SAF=0;SAP=26.8965;SAR=11;SRF=0;SRP=165.871;SRR=75;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:53:43,10:43:1737:10:402:-20.5853,0,-140.59 0/1:10:9,1:9:357:1:34:-0.388611,0,-29.482 0/0:23:23,0:23:890:0:0:0,-6.92369,-80.3921 dDocent_Contig_4805 175 . C T 217.94 . AB=0.210526;ABP=44.4969;AC=1;AF=0.166667;AN=6;AO=14;CIGAR=1X;DP=97;DPB=97;DPRA=7.58333;EPP=33.4109;EPPR=183.243;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=3.46945e-18;PAIRED=1;PAIREDR=0.987952;PAO=0;PQA=0;PQR=0;PRO=0;QA=513;QR=3271;RO=83;RPL=14;RPP=33.4109;RPPR=183.243;RPR=0;RUN=1;SAF=0;SAP=33.4109;SAR=14;SRF=0;SRP=183.243;SRR=83;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:57:45,12:45:1783:12:446:-23.3169,0,-143.532 0/0:6:6,0:6:243:0:0:0,-1.80618,-22.2482 0/0:34:32,2:32:1245:2:67:0,-3.87534,-105.956 dDocent_Contig_4806 91 . A G 741.419 . AB=0.533333;ABP=3.58936;AC=3;AF=0.5;AN=6;AO=32;CIGAR=1X;DP=60;DPB=60;DPRA=0;EPP=72.4974;EPPR=63.8115;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=3.46945e-18;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=1075;QR=975;RO=28;RPL=32;RPP=72.4974;RPPR=63.8115;RPR=0;RUN=1;SAF=32;SAP=72.4974;SAR=0;SRF=28;SRP=63.8115;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:26:12,14:12:417:14:459:-33.7957,0,-30.0365 0/1:22:13,9:13:454:9:312:-21.7935,0,-34.5707 0/1:12:3,9:3:104:9:304:-24.0756,0,-6.09073 dDocent_Contig_4808 81 . T C 403.445 . AB=0.447368;ABP=3.9246;AC=2;AF=0.333333;AN=6;AO=17;CIGAR=1X;DP=45;DPB=45;DPRA=2.71429;EPP=39.9253;EPPR=63.8115;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=607;QR=1011;RO=28;RPL=17;RPP=39.9253;RPPR=63.8115;RPR=0;RUN=1;SAF=17;SAP=39.9253;SAR=0;SRF=28;SRP=63.8115;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:28:16,12:16:573:12:435:-31.0607,0,-43.4709 0/1:10:5,5:5:187:5:172:-12.8067,0,-14.1826 0/0:7:7,0:7:251:0:0:0,-2.10721,-22.9373 dDocent_Contig_4810 8 . G A 38.5748 . AB=0.190476;ABP=20.4855;AC=2;AF=0.333333;AN=6;AO=4;CIGAR=1X1M2X1M1X;DP=27;DPB=27;DPRA=1.75;EPP=11.6962;EPPR=50.7827;GTI=0;LEN=1;MEANALT=1.5;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=142;QR=848;RO=22;RPL=0;RPP=11.6962;RPPR=50.7827;RPR=4;RUN=1;SAF=4;SAP=11.6962;SAR=0;SRF=22;SRP=50.7827;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|1:14:11,3:11:424:3:102:-5.29826,0,-34.296 0|0:6:6,0:6:229:0:0:0,-1.80618,-20.9748 0|1:7:5,1:5:195:1:40:-1.79489,0,-15.7275 dDocent_Contig_4811 40 . T G 1813.36 . AB=0.694118;ABP=30.8307;AC=3;AF=0.5;AN=6;AO=59;CIGAR=1X;DP=85;DPB=85;DPRA=0;EPP=131.127;EPPR=59.4686;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=0.881356;PAIREDR=0.807692;PAO=0;PQA=0;PQR=0;PRO=0;QA=2350;QR=945;RO=26;RPL=0;RPP=131.127;RPPR=59.4686;RPR=59;RUN=1;SAF=59;SAP=131.127;SAR=0;SRF=26;SRP=59.4686;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:41:11,30:11:381:30:1194:-95.3896,0,-22.2708 0/1:22:7,15:7:250:15:606:-48.2561,0,-16.2214 0/1:22:8,14:8:314:14:550:-43.2129,0,-22.0028 dDocent_Contig_4812 18 . T C 2503.79 . AB=0.36246;ABP=53.7834;AC=2;AF=0.333333;AN=6;AO=112;CIGAR=3X;DP=309;DPB=309;DPRA=0;EPP=246.215;EPPR=248.387;GTI=0;LEN=1;MEANALT=6.66667;MQM=43.1964;MQMR=54.9292;NS=3;NUMALT=3;ODDS=0;PAIRED=0.598214;PAIREDR=0.840708;PAO=0;PQA=0;PQR=0;PRO=0;QA=4440;QR=4505;RO=113;RPL=0;RPP=246.215;RPPR=248.387;RPR=112;RUN=1;SAF=112;SAP=246.215;SAR=0;SRF=113;SRP=248.387;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|1:175:66,9,74,14:66:2655:9,74,14:348,2926,554:-179.053,-194.195,-395.776,0,-199.596,-182.041,-153.325,-352.896,-158.725,-353.414 0|0:67:25,12,13,11:25:980:12,13,11:476,526,399:-24.9468,-0.821305,-74.5722,-0.89785,-46.6114,-74.343,0,-45.7196,-45.7929,-74.0574 0|1:67:22,3,25,10:22:870:3,25,10:122,988,375:-51.8634,-57.1562,-124.393,0,-66.8194,-60.6187,-27.7972,-94.6192,-37.4682,-92.9416 dDocent_Contig_4813 8 . G A 62.0857 . AB=0.121212;ABP=85.263;AC=1;AF=0.166667;AN=6;AO=8;CIGAR=1X;DP=213;DPB=213;DPRA=0.897959;EPP=20.3821;EPPR=448.162;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=3.46945e-18;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=306;QR=7830;RO=205;RPL=0;RPP=20.3821;RPPR=448.162;RPR=8;RUN=1;SAF=8;SAP=20.3821;SAR=0;SRF=205;SRP=448.162;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:134:134,0:134:5126:0:0:0,-40.338,-461.353 0/0:13:13,0:13:485:0:0:0,-3.91339,-43.9913 0/1:66:58,8:58:2219:8:306:-8.03248,0,-180.064 dDocent_Contig_4814 19 . C A 929.046 . AB=0.168091;ABP=338.871;AC=3;AF=0.5;AN=6;AO=59;CIGAR=1X;DP=351;DPB=351;DPRA=0;EPP=131.127;EPPR=637.08;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=2257;QR=11453;RO=292;RPL=0;RPP=131.127;RPPR=637.08;RPR=59;RUN=1;SAF=59;SAP=131.127;SAR=0;SRF=292;SRP=637.08;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:190:163,27:163:6407:27:1059:-38.414,0,-519.26 0/1:83:66,17:66:2587:17:624:-31.4956,0,-208.011 0/1:78:63,15:63:2459:15:574:-28.5179,0,-197.994 dDocent_Contig_4816 32 . C A 22418 . AB=0.725971;ABP=436.781;AC=3;AF=0.5;AN=6;AO=710;CIGAR=1X;DP=978;DPB=978;DPRA=0;EPP=1544.76;EPPR=584.965;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=5.55112e-17;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=28260;QR=10704;RO=268;RPL=0;RPP=1544.76;RPPR=584.965;RPR=710;RUN=1;SAF=710;SAP=1544.76;SAR=0;SRF=268;SRP=584.965;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:606:177,429:177:7120:429:17058:-1351.47,0,-458.008 0/1:181:45,136:45:1766:136:5395:-430.92,0,-104.677 0/1:191:46,145:46:1818:145:5807:-464.931,0,-106.329 dDocent_Contig_4819 32 . C G 275.102 . AB=0.170213;ABP=91.8097;AC=2;AF=0.333333;AN=6;AO=16;CIGAR=1X;DP=123;DPB=123;DPRA=1.62069;EPP=37.7539;EPPR=233.186;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=651;QR=4170;RO=106;RPL=0;RPP=37.7539;RPPR=233.186;RPR=16;RUN=1;SAF=16;SAP=37.7539;SAR=0;SRF=106;SRP=233.186;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:68:58,10:58:2297:10:406:-16.4304,0,-186.436 0/1:26:20,6:20:770:6:245:-14.6027,0,-61.7927 0/0:29:28,0:28:1103:0:0:0,-8.42884,-99.2051 dDocent_Contig_4820 74 . C T 329.277 . AB=0.298246;ABP=23.1631;AC=2;AF=0.333333;AN=6;AO=18;CIGAR=1X;DP=79;DPB=79;DPRA=0;EPP=42.0968;EPPR=135.47;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=622;QR=2090;RO=61;RPL=18;RPP=42.0968;RPPR=135.47;RPR=0;RUN=1;SAF=18;SAP=42.0968;SAR=0;SRF=61;SRP=135.47;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:34:30,4:30:1045:4:144:-3.07851,0,-84.1258 0/0:22:21,1:21:725:1:34:0,-3.22375,-62.1696 0/1:23:10,13:10:320:13:444:-33.3602,0,-22.1856 dDocent_Contig_4821 8 . G A 995.183 . AB=0.159905;ABP=423.96;AC=3;AF=0.5;AN=6;AO=67;CIGAR=1X;DP=419;DPB=419;DPRA=0;EPP=148.499;EPPR=767.369;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=2558;QR=13457;RO=352;RPL=0;RPP=148.499;RPPR=767.369;RPR=67;RUN=1;SAF=67;SAP=148.499;SAR=0;SRF=352;SRP=767.369;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:252:214,38:214:8191:38:1468:-56.5352,0,-661.102 0/1:84:71,13:71:2696:13:475:-17.8022,0,-217.546 0/1:83:67,16:67:2570:16:615:-30.7039,0,-206.509 dDocent_Contig_4822 1 . N G 66.4848 . AB=0;ABP=0;AC=2;AF=1;AN=2;AO=2;CIGAR=1X;DP=2;DPB=2;DPRA=0;EPP=7.35324;EPPR=0;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=0;NS=1;NUMALT=1;ODDS=5.99146;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=70;QR=0;RO=0;RPL=0;RPP=7.35324;RPPR=0;RPR=2;RUN=1;SAF=0;SAP=7.35324;SAR=2;SRF=0;SRP=0;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 1/1:2:0,2:0:0:2:70:-6.6474,-0.60206,0 ./.:.:.:.:.:.:.:. ./.:.:.:.:.:.:.:. dDocent_Contig_4823 12 . C A 60.6548 . AB=0.125;ABP=61.6401;AC=1;AF=0.166667;AN=6;AO=7;CIGAR=1X;DP=140;DPB=140;DPRA=1.25;EPP=18.2106;EPPR=291.816;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=0.714286;PAIREDR=0.857143;PAO=0;PQA=0;PQR=0;PRO=0;QA=285;QR=5303;RO=133;RPL=0;RPP=18.2106;RPPR=291.816;RPR=7;RUN=1;SAF=7;SAP=18.2106;SAR=0;SRF=133;SRP=291.816;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:52:51,1:51:2028:1:41:0,-11.559,-178.609 0/0:40:40,0:40:1592:0:0:0,-12.0412,-143.519 0/1:48:42,6:42:1683:6:244:-7.88939,0,-137.244 dDocent_Contig_4824 98 . N C 614.985 . AB=0;ABP=0;AC=4;AF=1;AN=4;AO=21;CIGAR=1X;DP=21;DPB=21;DPRA=0;EPP=48.6112;EPPR=0;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=0;NS=2;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=673;QR=0;RO=0;RPL=21;RPP=48.6112;RPPR=0;RPR=0;RUN=1;SAF=21;SAP=48.6112;SAR=0;SRF=0;SRP=0;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 1/1:12:0,12:0:0:12:366:-33.2359,-3.61236,0 ./.:.:.:.:.:.:.:. 1/1:9:0,9:0:0:9:307:-27.9615,-2.70927,0 dDocent_Contig_4825 39 . G A 4887.74 . AB=0.135714;ABP=164.382;AC=0;AF=0;AN=6;AO=19;CIGAR=1X1M1X2M1X;DP=242;DPB=242;DPRA=0;EPP=44.2683;EPPR=70.3259;GTI=0;LEN=1;MEANALT=3;MQM=60;MQMR=60;NS=3;NUMALT=3;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=752;QR=1187;RO=31;RPL=0;RPP=44.2683;RPPR=70.3259;RPR=19;RUN=1;SAF=19;SAP=44.2683;SAR=0;SRF=31;SRP=70.3259;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|0:102:22,0,29,51:22:847:0,29,51:0,1092,1944:-172.744,-179.367,-248.91,-89.9013,-159.445,-150.715,-19.9163,-89.4621,0,-74.1096 0|0:89:8,10,41,30:8:305:10,41,30:401,1573,1163:-197.219,-166.587,-188.595,-70.5246,-62.4999,-83.2,-104.083,-96.0587,0,-120.07 0|0:51:1,9,18,23:1:35:9,18,23:351,698,857:-124.334,-95.7832,-95.921,-67.286,-41.2783,-64.7144,-54.4999,-28.4952,0,-50.4226 dDocent_Contig_4826 7 . A G 224.592 . AB=0.209877;ABP=62.2298;AC=3;AF=0.5;AN=6;AO=17;CIGAR=1X;DP=81;DPB=81;DPRA=0;EPP=39.9253;EPPR=141.985;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=571;QR=2438;RO=64;RPL=0;RPP=39.9253;RPPR=141.985;RPR=17;RUN=1;SAF=17;SAP=39.9253;SAR=0;SRF=64;SRP=141.985;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:52:46,6:46:1750:6:205:-3.12726,0,-142.101 0/1:14:10,4:10:388:4:121:-6.97324,0,-31.0626 0/1:15:8,7:8:300:7:245:-17.8709,0,-22.8404 dDocent_Contig_4827 70 . G T 4744.4 . AB=0.619926;ABP=36.8644;AC=3;AF=0.5;AN=6;AO=168;CIGAR=1X;DP=271;DPB=271;DPRA=0;EPP=367.818;EPPR=220.158;GTI=0;LEN=1;MEANALT=1.33333;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=6225;QR=3801;RO=100;RPL=168;RPP=367.818;RPPR=220.158;RPR=0;RUN=1;SAF=168;SAP=367.818;SAR=0;SRF=100;SRP=220.158;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:145:40,105:40:1529:105:3849:-302.881,0,-94.2336 0/1:64:26,35:26:985:35:1303:-98.8692,0,-70.2743 0/1:62:34,28:34:1287:28:1073:-78.2126,0,-97.4582 dDocent_Contig_4828 52 . C A 815.819 . AB=0.0555556;ABP=95.6598;AC=0;AF=0;AN=6;AO=3;CIGAR=2M1X2M3D1M;DP=187;DPB=195.333;DPRA=0;EPP=9.52472;EPPR=300.502;GTI=0;LEN=1;MEANALT=3;MQM=60;MQMR=60;NS=3;NUMALT=2;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=115;QR=5266;RO=137;RPL=3;RPP=9.52472;RPPR=300.502;RPR=0;RUN=1;SAF=3;SAP=9.52472;SAR=0;SRF=137;SRP=300.502;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|0:104:74,0,26:74:2837:0,26:0,999:-59.8246,-82.1008,-314.925,0,-232.919,-225.093 0|0:29:21,0,8:21:804:0,8:0,284:-17.1653,-23.4869,-89.4819,0,-66.3574,-63.9492 0|0:54:42,3,8:42:1625:3,8:115,280:-10.1148,-13.312,-145.906,0,-124.037,-131.067 dDocent_Contig_4829 30 . T C 287.324 . AB=0.241935;ABP=38.8746;AC=3;AF=0.5;AN=6;AO=15;CIGAR=1X;DP=62;DPB=62;DPRA=0;EPP=35.5824;EPPR=105.07;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=571;QR=1565;RO=47;RPL=0;RPP=35.5824;RPPR=105.07;RPR=15;RUN=1;SAF=15;SAP=35.5824;SAR=0;SRF=47;SRP=105.07;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:33:23,10:23:779:10:403:-26.695,0,-60.4848 0/1:21:17,4:17:556:4:128:-5.50764,0,-44.0273 0/1:8:7,1:7:230:1:40:-1.58744,0,-18.6133 dDocent_Contig_4831 107 . N T 97.967 . AB=0;ABP=0;AC=2;AF=1;AN=2;AO=3;CIGAR=1X;DP=3;DPB=3;DPRA=0;EPP=9.52472;EPPR=0;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=0;NS=1;NUMALT=1;ODDS=6.68461;PAIRED=1;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=105;QR=0;RO=0;RPL=0;RPP=9.52472;RPPR=0;RPR=3;RUN=1;SAF=0;SAP=9.52472;SAR=3;SRF=0;SRP=0;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL ./.:.:.:.:.:.:.:. 1/1:3:0,3:0:0:3:105:-9.79616,-0.90309,0 ./.:.:.:.:.:.:.:. dDocent_Contig_4832 15 . A G 4793.84 . AB=0.503521;ABP=3.04088;AC=3;AF=0.5;AN=6;AO=143;CIGAR=2X2M;DP=284;DPB=284;DPRA=0;EPP=313.531;EPPR=146.327;GTI=0;LEN=1;MEANALT=3.33333;MQM=59.6434;MQMR=60;NS=3;NUMALT=3;ODDS=0;PAIRED=0.993007;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=5684;QR=2632;RO=66;RPL=0;RPP=313.531;RPPR=146.327;RPR=143;RUN=1;SAF=143;SAP=313.531;SAR=0;SRF=66;SRP=146.327;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|1:120:44,6,49,20:44:1755:6,49,20:241,1944,802:-146.735,-140.121,-282.843,0,-124.667,-129.776,-93.9071,-218.576,-78.4537,-232.415 0|1:71:10,10,43,8:10:398:10,43,8:389,1700,324:-136.595,-107.639,-137.401,0,-0.809244,-19.8282,-112.888,-113.694,-6.05301,-143.252 1|0:93:12,7,51,23:12:479:7,51,23:278,2040,929:-201.555,-182.281,-219.625,-37.1385,-53.7031,-61.2363,-128.58,-145.145,0,-161.107 dDocent_Contig_4833 15 . T C 246.423 . AB=0.173077;ABP=99.5573;AC=3;AF=0.5;AN=6;AO=18;CIGAR=1X;DP=104;DPB=104;DPRA=0;EPP=3.49285;EPPR=189.757;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=0;PAIREDR=0.953488;PAO=0;PQA=0;PQR=0;PRO=0;QA=655;QR=3275;RO=86;RPL=0;RPP=42.0968;RPPR=189.757;RPR=18;RUN=1;SAF=8;SAP=3.49285;SAR=10;SRF=86;SRP=189.757;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:58:52,6:52:2009:6:230:-3.60448,0,-163.563 0/1:20:18,2:18:678:2:69:-0.532063,0,-55.3263 0/1:26:16,10:16:588:10:356:-24.5523,0,-45.4175 dDocent_Contig_4834 47 . C G 1602.83 . AB=0.22956;ABP=205.026;AC=3;AF=0.5;AN=6;AO=73;CIGAR=1X;DP=318;DPB=318;DPRA=0;EPP=161.528;EPPR=535.021;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=2896;QR=9663;RO=245;RPL=0;RPP=161.528;RPPR=535.021;RPR=73;RUN=1;SAF=73;SAP=161.528;SAR=0;SRF=245;SRP=535.021;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:203:179,24:179:7028:24:967:-26.2215,0,-571.077 0/1:25:13,12:13:513:12:464:-34.582,0,-38.9896 0/1:90:53,37:53:2122:37:1465:-105.002,0,-164.064 dDocent_Contig_4835 48 . G A 5271.56 . AB=0.731707;ABP=22.1298;AC=5;AF=0.833333;AN=6;AO=159;CIGAR=1X;DP=177;DPB=177;DPRA=0;EPP=348.274;EPPR=42.0968;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=6296;QR=717;RO=18;RPL=0;RPP=348.274;RPPR=42.0968;RPR=159;RUN=1;SAF=159;SAP=348.274;SAR=0;SRF=18;SRP=42.0968;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 1/1:104:6,98:6:242:98:3915:-330.171,-9.15017,0 0/1:41:11,30:11:435:30:1170:-93.2414,0,-27.1607 1/1:32:1,31:1:40:31:1211:-105.266,-5.63728,0 dDocent_Contig_4836 23 . A G 2179 . AB=0.496644;ABP=3.02487;AC=3;AF=0.5;AN=6;AO=74;CIGAR=1X;DP=149;DPB=149;DPRA=0;EPP=163.699;EPPR=165.871;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=2971;QR=2980;RO=75;RPL=0;RPP=163.699;RPPR=165.871;RPR=74;RUN=1;SAF=74;SAP=163.699;SAR=0;SRF=75;SRP=165.871;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:57:35,22:35:1410:22:889:-63.1592,0,-109.995 0/1:44:30,14:30:1169:14:552:-36.7748,0,-92.2382 0/1:48:10,38:10:401:38:1530:-123.488,0,-21.9995 dDocent_Contig_4837 117 . C T 3561.84 . AB=0.694805;ABP=53.772;AC=4;AF=0.666667;AN=6;AO=134;CIGAR=1X;DP=182;DPB=182;DPRA=0;EPP=293.988;EPPR=107.241;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=4541;QR=1632;RO=48;RPL=0;RPP=293.988;RPPR=107.241;RPR=134;RUN=1;SAF=0;SAP=293.988;SAR=134;SRF=0;SRP=107.241;SRR=48;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:113:39,74:39:1318:74:2500:-191.243,0,-84.8984 1/1:28:1,27:1:35:27:930:-80.5156,-4.93021,0 0/1:41:8,33:8:279:33:1111:-87.9485,0,-13.1068 dDocent_Contig_4839 185 . C T 37.0478 . AB=0.135135;ABP=45.7942;AC=2;AF=0.333333;AN=6;AO=6;CIGAR=1X;DP=53;DPB=53;DPRA=0;EPP=16.0391;EPPR=105.07;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=220;QR=1811;RO=47;RPL=6;RPP=16.0391;RPPR=105.07;RPR=0;RUN=1;SAF=0;SAP=16.0391;SAR=6;SRF=0;SRP=105.07;SRR=47;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:30:27,3:27:1015:3:113:-1.50512,0,-82.5906 0/0:16:15,1:15:592:1:27:0,-2.1167,-50.9162 0/1:7:5,2:5:204:2:80:-5.48458,0,-16.6368 dDocent_Contig_4841 23 . G A 1419.88 . AB=0.42735;ABP=8.37402;AC=3;AF=0.5;AN=6;AO=50;CIGAR=1X;DP=117;DPB=117;DPRA=0;EPP=111.584;EPPR=148.499;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=0.98;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=2008;QR=2691;RO=67;RPL=0;RPP=111.584;RPPR=148.499;RPR=50;RUN=1;SAF=50;SAP=111.584;SAR=0;SRF=67;SRP=148.499;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:83:50,33:50:2008:33:1331:-95.0605,0,-155.924 0/1:24:16,8:16:643:8:315:-21.4886,0,-50.9805 0/1:10:1,9:1:40:9:362:-29.9337,0,-0.985379 dDocent_Contig_4842 46 . C A 133.887 . AB=0.212121;ABP=26.7649;AC=1;AF=0.166667;AN=6;AO=9;CIGAR=1X3M1X;DP=86;DPB=86;DPRA=2.36667;EPP=22.5536;EPPR=168.042;GTI=0;LEN=1;MEANALT=1.5;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=351;QR=2942;RO=76;RPL=0;RPP=22.5536;RPPR=168.042;RPR=9;RUN=1;SAF=9;SAP=22.5536;SAR=0;SRF=76;SRP=168.042;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|1:33:26,7:26:1009:7:272:-14.9116,0,-81.1719 0|0:38:35,2:35:1363:2:79:0,-4.03839,-115.436 0|0:15:15,0:15:570:0:0:0,-4.51545,-51.6319 dDocent_Contig_4843 14 . G T 7815.87 . AB=0.0492308;ABP=576.606;AC=0;AF=0;AN=6;AO=16;CIGAR=6M1X5M;DP=325;DPB=302.25;DPRA=0;EPP=37.7539;EPPR=59.4686;GTI=0;LEN=1;MEANALT=5.33333;MQM=60;MQMR=60;NS=3;NUMALT=6;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=643;QR=1006;RO=26;RPL=0;RPP=37.7539;RPPR=59.4686;RPR=16;RUN=1;SAF=16;SAP=37.7539;SAR=0;SRF=26;SRP=59.4686;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|0:170:19,127,0,6,0,10,7:19:732:127,0,6,0,10,7:4970,0,231,0,390,277:-402.927,0,-21.8699,-408.646,-60.1007,-468.749,-389.721,-41.1764,-449.824,-448.018,-408.646,-60.1007,-468.749,-449.824,-468.749,-376.587,-28.0414,-436.69,-417.765,-436.69,-433.68,-385.85,-37.3029,-445.952,-427.027,-445.952,-413.893,-443.845 0|0:76:7,59,0,3,1,0,5:7:274:59,0,3,1,0,5:2305,0,120,41,0,202:-187.376,0,-4.76454,-189.483,-22.5253,-212.013,-179.598,-12.6397,-202.128,-201.225,-186.099,-19.1405,-208.629,-198.744,-208.328,-189.483,-22.5253,-212.013,-202.128,-208.629,-212.013,-172.829,-5.86952,-195.359,-185.474,-191.975,-195.359,-193.854 0|0:79:0,49,7,12,6,1,4:0:0:49,7,12,6,1,4:1919,270,475,238,39,164:-196.806,-39.0149,-24.2644,-174.636,-16.8465,-172.529,-157.791,0,-135.621,-154.179,-177.215,-19.423,-155.044,-138.199,-175.408,-193.601,-35.8092,-171.43,-154.585,-174.009,-193.299,-183.269,-25.4763,-161.099,-144.254,-163.677,-180.063,-182.065 dDocent_Contig_4844 7 . A G 732.294 . AB=0.417582;ABP=8.37933;AC=2;AF=0.333333;AN=6;AO=43;CIGAR=1X;DP=167;DPB=167;DPRA=0;EPP=96.3836;EPPR=270.101;GTI=0;LEN=1;MEANALT=1.33333;MQM=52.3256;MQMR=60;NS=3;NUMALT=1;ODDS=6.93889e-18;PAIRED=0.953488;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=1411;QR=4677;RO=123;RPL=0;RPP=96.3836;RPPR=270.101;RPR=43;RUN=1;SAF=43;SAP=96.3836;SAR=0;SRF=123;SRP=270.101;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:76:70,5:70:2674:5:114:0,-13.1666,-231.328 0/1:57:26,31:26:968:31:1074:-66.6115,0,-70.2678 0/1:34:27,7:27:1035:7:223:-10.1408,0,-83.2241 dDocent_Contig_4845 146 . A T 1875.39 . AB=0.691489;ABP=32.9489;AC=3;AF=0.5;AN=6;AO=65;CIGAR=1X;DP=94;DPB=94;DPRA=0;EPP=144.156;EPPR=65.983;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=2449;QR=1070;RO=29;RPL=0;RPP=144.156;RPPR=65.983;RPR=65;RUN=1;SAF=0;SAP=144.156;SAR=65;SRF=0;SRP=65.983;SRR=29;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:55:8,47:8:299:47:1772:-143.172,0,-10.7061 0/1:12:5,7:5:177:7:257:-19.8676,0,-12.6624 0/1:27:16,11:16:594:11:420:-30.0222,0,-45.6614 dDocent_Contig_4846 35 . G A 863.526 . AB=0.208955;ABP=150.897;AC=2;AF=0.333333;AN=6;AO=43;CIGAR=1X;DP=265;DPB=265;DPRA=0;EPP=96.3836;EPPR=485.077;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=1705;QR=8884;RO=222;RPL=0;RPP=96.3836;RPPR=485.077;RPR=43;RUN=1;SAF=43;SAP=96.3836;SAR=0;SRF=222;SRP=485.077;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:144:123,21:123:4924:21:847:-33.1946,0,-399.692 0/1:57:36,21:36:1423:21:817:-56.6809,0,-111.163 0/0:64:63,1:63:2537:1:41:0,-15.1714,-224.364 dDocent_Contig_4847 17 . A G 1328 . AB=0.315476;ABP=52.6957;AC=3;AF=0.5;AN=6;AO=53;CIGAR=1X;DP=168;DPB=168;DPRA=0;EPP=118.098;EPPR=252.73;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=2088;QR=4633;RO=115;RPL=0;RPP=118.098;RPPR=252.73;RPR=53;RUN=1;SAF=53;SAP=118.098;SAR=0;SRF=115;SRP=252.73;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:106:76,30:76:3070:30:1173:-73.9346,0,-244.461 0/1:30:21,9:21:846:9:360:-23.7307,0,-67.4228 0/1:32:18,14:18:717:14:555:-40.6576,0,-55.2237 dDocent_Contig_4848 35 . G T 350.774 . AB=0.363636;ABP=10.1169;AC=2;AF=0.333333;AN=6;AO=16;CIGAR=1X3M;DP=62;DPB=62;DPRA=1.22222;EPP=37.7539;EPPR=92.0407;GTI=0;LEN=1;MEANALT=2;MQM=60;MQMR=60;NS=3;NUMALT=2;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=562;QR=1420;RO=41;RPL=0;RPP=37.7539;RPPR=92.0407;RPR=16;RUN=1;SAF=16;SAP=37.7539;SAR=0;SRF=41;SRP=92.0407;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|1:15:9,3,3:9:318:3,3:104,107:-6.01821,-0.279277,-25.2722,0,-17.452,-25.0004 0|0:18:17,1,0:17:591:1,0:36,0:0,-1.82026,-49.9168,-5.11751,-50.2178,-53.1559 0|1:29:15,1,13:15:511:1,13:34,455:-32.512,-34.2701,-75.423,0,-38.7016,-37.5461 dDocent_Contig_4849 48 . A T 99.2321 . AB=0.363636;ABP=4.78696;AC=1;AF=0.166667;AN=6;AO=4;CIGAR=1X;DP=25;DPB=25;DPRA=1.57143;EPP=11.6962;EPPR=48.6112;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=163;QR=843;RO=21;RPL=0;RPP=11.6962;RPPR=48.6112;RPR=4;RUN=1;SAF=4;SAP=11.6962;SAR=0;SRF=21;SRP=48.6112;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:7:7,0:7:279:0:0:0,-2.10721,-25.4809 0/0:7:7,0:7:286:0:0:0,-2.10721,-26.1148 0/1:11:7,4:7:278:4:163:-11.7471,0,-22.079 dDocent_Contig_4850 32 . A G 311.249 . AB=0.175926;ABP=101.531;AC=3;AF=0.5;AN=6;AO=19;CIGAR=1X1M1X;DP=108;DPB=108;DPRA=0;EPP=44.2683;EPPR=196.271;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=756;QR=3500;RO=89;RPL=0;RPP=44.2683;RPPR=196.271;RPR=19;RUN=1;SAF=19;SAP=44.2683;SAR=0;SRF=89;SRP=196.271;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|1:56:50,6:50:1979:6:242:-5.29985,0,-161.461 0|1:14:11,3:11:432:3:118:-6.78809,0,-35.0202 0|1:38:28,10:28:1089:10:396:-24.5597,0,-86.8669 dDocent_Contig_4851 103 . N T 135.787 . AB=0;ABP=0;AC=2;AF=1;AN=2;AO=5;CIGAR=5X;DP=5;DPB=5;DPRA=0;EPP=13.8677;EPPR=0;GTI=0;LEN=1;MEANALT=1;MQM=42.6;MQMR=0;NS=1;NUMALT=1;ODDS=8.07091;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=149;QR=0;RO=0;RPL=0;RPP=13.8677;RPPR=0;RPR=5;RUN=1;SAF=0;SAP=13.8677;SAR=5;SRF=0;SRP=0;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 1|1:5:0,5:0:0:5:149:-13.5786,-1.50515,0 .:.:.:.:.:.:.:. .:.:.:.:.:.:.:. dDocent_Contig_4852 20 . T C 787.357 . AB=0.279661;ABP=52.7701;AC=3;AF=0.5;AN=6;AO=33;CIGAR=1X;DP=118;DPB=118;DPRA=0;EPP=74.6689;EPPR=187.585;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=1319;QR=3410;RO=85;RPL=0;RPP=74.6689;RPPR=187.585;RPR=33;RUN=1;SAF=33;SAP=74.6689;SAR=0;SRF=85;SRP=187.585;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:71:51,20:51:2042:20:790:-50.044,0,-162.591 0/1:19:13,6:13:521:6:244:-16.619,0,-41.5178 0/1:28:21,7:21:847:7:285:-17.5956,0,-68.1122 dDocent_Contig_4854 97 . C A 6398.21 . AB=0;ABP=0;AC=6;AF=1;AN=6;AO=242;CIGAR=1X;DP=268;DPB=268;DPRA=0;EPP=528.507;EPPR=59.4686;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=7876;QR=771;RO=26;RPL=242;RPP=528.507;RPPR=59.4686;RPR=0;RUN=1;SAF=242;SAP=528.507;SAR=0;SRF=26;SRP=59.4686;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 1/1:170:18,152:18:530:152:4901:-393.288,-3.19282,0 1/1:29:1,28:1:27:28:887:-77.4232,-6.03009,0 1/1:69:7,62:7:214:62:2088:-168.632,-1.21018,0 dDocent_Contig_4855 46 . C T 131.917 . AB=0.186047;ABP=39.8243;AC=2;AF=0.333333;AN=6;AO=10;CIGAR=1X;DP=72;DPB=72;DPRA=0;EPP=24.725;EPPR=137.642;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=3.46945e-18;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=403;QR=2493;RO=62;RPL=0;RPP=24.725;RPPR=137.642;RPR=10;RUN=1;SAF=10;SAP=24.725;SAR=0;SRF=62;SRP=137.642;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:23:19,4:19:767:4:163:-8.13474,0,-62.4271 0/1:20:16,4:16:644:4:158:-8.57967,0,-52.2739 0/0:29:27,2:27:1082:2:82:0,-0.950192,-89.8852 dDocent_Contig_4856 63 . T C 274.208 . AB=0.3;ABP=16.9077;AC=2;AF=0.333333;AN=6;AO=12;CIGAR=1X;DP=47;DPB=47;DPRA=2.85714;EPP=29.068;EPPR=79.0118;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=3.46945e-18;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=470;QR=1383;RO=35;RPL=12;RPP=29.068;RPPR=79.0118;RPR=0;RUN=1;SAF=12;SAP=29.068;SAR=0;SRF=35;SRP=79.0118;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:31:21,10:21:825:10:406:-27.5687,0,-65.2364 0/0:7:7,0:7:273:0:0:0,-2.10721,-24.9352 0/1:9:7,2:7:285:2:64:-3.36883,0,-23.3151 dDocent_Contig_4857 11 . T G 62.4557 . AB=0.136364;ABP=53.5464;AC=1;AF=0.166667;AN=6;AO=6;CIGAR=1X;DP=114;DPB=114;DPRA=1.25714;EPP=16.0391;EPPR=147.557;GTI=0;LEN=1;MEANALT=1;MQM=56.6667;MQMR=45.8868;NS=3;NUMALT=1;ODDS=3.46945e-18;PAIRED=0.833333;PAIREDR=0.584906;PAO=0;PQA=0;PQR=0;PRO=0;QA=233;QR=3856;RO=106;RPL=0;RPP=16.0391;RPPR=233.186;RPR=6;RUN=1;SAF=6;SAP=16.0391;SAR=0;SRF=95;SRP=147.557;SRR=11;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:44:38,6:38:1360:6:233:-7.76845,0,-104.71 0/0:46:44,0:44:1595:0:0:0,-13.2453,-114.532 0/0:24:24,0:24:901:0:0:0,-7.22472,-68.7004 dDocent_Contig_4859 23 . T C 2153.7 . AB=0.608696;ABP=14.8118;AC=3;AF=0.5;AN=6;AO=70;CIGAR=1X;DP=115;DPB=115;DPRA=0;EPP=155.013;EPPR=100.727;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=2829;QR=1802;RO=45;RPL=0;RPP=155.013;RPPR=100.727;RPR=70;RUN=1;SAF=70;SAP=155.013;SAR=0;SRF=45;SRP=100.727;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:55:22,33:22:886:33:1339:-104.21,0,-63.4879 0/1:36:8,28:8:325:28:1132:-91.3247,0,-18.7826 0/1:24:15,9:15:591:9:358:-25.358,0,-46.3037 dDocent_Contig_4861 141 . G A 45.0825 . AB=0.210526;ABP=16.8392;AC=2;AF=0.333333;AN=6;AO=4;CIGAR=1X;DP=23;DPB=23;DPRA=2.375;EPP=11.6962;EPPR=44.2683;GTI=0;LEN=1;MEANALT=1;MQM=48;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=0.5;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=140;QR=661;RO=19;RPL=0;RPP=11.6962;RPPR=44.2683;RPR=4;RUN=1;SAF=0;SAP=11.6962;SAR=4;SRF=0;SRP=44.2683;SRR=19;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:11:8,3:8:277:3:105:-6.01355,0,-21.9557 0/1:8:7,1:7:244:1:35:-1.09039,0,-19.8918 0/0:4:4,0:4:140:0:0:0,-1.20412,-12.9449 dDocent_Contig_4863 15 . A G 59.6549 . AB=0.153846;ABP=43.6001;AC=3;AF=0.5;AN=6;AO=6;CIGAR=1X2M1X;DP=39;DPB=39;DPRA=0;EPP=16.0391;EPPR=72.4974;GTI=0;LEN=1;MEANALT=1.33333;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=3.46945e-18;PAIRED=0.5;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=240;QR=1234;RO=32;RPL=0;RPP=16.0391;RPPR=72.4974;RPR=6;RUN=1;SAF=6;SAP=16.0391;SAR=0;SRF=32;SRP=72.4974;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|1:9:7,2:7:275:2:79:-4.78836,0,-22.4098 0|1:22:18,3:18:684:3:122:-4.65708,0,-55.18 0|1:8:7,1:7:275:1:39:-1.48832,0,-22.7108 dDocent_Contig_4864 19 . G T 729.974 . AB=0.0483871;ABP=222.679;AC=0;AF=0;AN=6;AO=6;CIGAR=1M1I1X;DP=267;DPB=270;DPRA=0;EPP=16.0391;EPPR=472.048;GTI=0;LEN=1;MEANALT=2;MQM=60;MQMR=60;NS=3;NUMALT=2;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=239;QR=8423;RO=216;RPL=0;RPP=16.0391;RPPR=472.048;RPR=6;RUN=1;SAF=6;SAP=16.0391;SAR=0;SRF=216;SRP=472.048;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|0:143:126,0,17:126:4889:0,17:0,658:-16.5048,-54.4346,-456.083,0,-402.035,-396.918 0|0:41:30,3,8:30:1168:3,8:123,304:-15.8728,-14.7433,-109.839,0,-85.8189,-93.5648 0|0:83:60,3,20:60:2366:3,20:116,781:-46.1426,-54.6776,-248.44,0,-185.143,-188.649 dDocent_Contig_4865 26 . A G 3454.14 . AB=0.22293;ABP=107.697;AC=2;AF=0.333333;AN=6;AO=35;CIGAR=3X3M2X;DP=157;DPB=157.375;DPRA=0;EPP=79.0118;EPPR=46.4397;GTI=0;LEN=1;MEANALT=3;MQM=44.3714;MQMR=60;NS=3;NUMALT=2;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=1362;QR=786;RO=20;RPL=0;RPP=79.0118;RPPR=46.4397;RPR=35;RUN=1;SAF=35;SAP=79.0118;SAR=0;SRF=20;SRP=46.4397;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 1|0:104:9,21,70:9:350:21,70:810,2787:-245.66,-200.71,-223.15,-18.8326,0,-26.5452 0|0:25:9,5,11:9:357:5,11:196,417:-31.1897,-17.7757,-45.6671,0,-13.2737,-26.0791 1|0:28:2,9,16:2:79:9,16:356,646:-74.0865,-46.7578,-50.5486,-21.4204,0,-23.1071 dDocent_Contig_4866 155 . A C 142.55 . AB=0.285714;ABP=8.59409;AC=3;AF=0.5;AN=6;AO=4;CIGAR=2X2M;DP=24;DPB=24;DPRA=2.8;EPP=11.6962;EPPR=42.0968;GTI=0;LEN=1;MEANALT=1;MQM=40;MQMR=60;NS=3;NUMALT=2;ODDS=8.67362e-19;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=148;QR=686;RO=18;RPL=0;RPP=11.6962;RPPR=42.0968;RPR=4;RUN=1;SAF=0;SAP=11.6962;SAR=4;SRF=0;SRP=42.0968;SRR=18;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|0:8:8,0,0:8:306:0,0:0,0:0,-2.40824,-27.8996,-2.40824,-27.8996,-27.8996 1|1:2:0,2,0:0:0:2,0:79,0:-6.97786,-0.60206,0,-6.97786,-0.60206,-6.97786 0|1:14:10,0,4:10:380:0,4:0,148:-8.79931,-11.8096,-42.9904,0,-31.5405,-30.3364 dDocent_Contig_4867 39 . G A 1237.38 . AB=0.209622;ABP=216.135;AC=3;AF=0.5;AN=6;AO=61;CIGAR=1X;DP=291;DPB=291;DPRA=0;EPP=135.47;EPPR=502.449;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=1.38778e-17;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=2399;QR=9061;RO=230;RPL=0;RPP=135.47;RPPR=502.449;RPR=61;RUN=1;SAF=61;SAP=135.47;SAR=0;SRF=230;SRP=502.449;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:182:138,44:138:5442:44:1729:-101.046,0,-434.845 0/1:58:47,11:47:1871:11:430:-21.5928,0,-151.143 0/1:51:45,6:45:1748:6:240:-6.62201,0,-142.181 dDocent_Contig_4868 46 . T C 61.0005 . AB=0.112245;ABP=130.994;AC=1;AF=0.166667;AN=6;AO=16;CIGAR=1X;DP=388;DPB=388;DPRA=1.9557;EPP=11.6962;EPPR=810.798;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=6.93889e-18;PAIRED=0.5;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=593;QR=14710;RO=372;RPL=8;RPP=3.0103;RPPR=810.798;RPR=8;RUN=1;SAF=12;SAP=11.6962;SAR=4;SRF=372;SRP=810.798;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:211:206,5:206:8151:5:181:0,-46.8796,-716.537 0/1:98:87,11:87:3442:11:412:-7.92396,0,-280.34 0/0:79:79,0:79:3117:0:0:0,-23.7814,-280.61 dDocent_Contig_4869 10 . G C 4708.32 . AB=0.165919;ABP=219.194;AC=3;AF=0.5;AN=6;AO=37;CIGAR=1X2M2X1M1X2M1X;DP=223;DPB=223;DPRA=0;EPP=83.3548;EPPR=44.2683;GTI=0;LEN=1;MEANALT=3.33333;MQM=60;MQMR=60;NS=3;NUMALT=3;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=1421;QR=709;RO=19;RPL=0;RPP=83.3548;RPPR=44.2683;RPR=37;RUN=1;SAF=37;SAP=83.3548;SAR=0;SRF=19;SRP=44.2683;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 1|0:137:8,43,20,65:8:292:43,20,65:1684,767,2579:-324.509,-188.448,-199.35,-263.972,-149.35,-281.799,-114.633,0,-75.5332,-118.912 1|0:34:5,7,5,17:5:191:7,5,17:275,186,676:-61.1148,-40.0003,-53.5624,-47.4022,-40.4517,-61.5657,-6.95541,0,-7.40875,-17.5084 1|0:52:6,21,12,13:6:226:21,12,13:822,468,527:-90.731,-24.9517,-37.144,-54.0702,-4.99938,-68.9729,-49.0757,0,-29.1224,-63.6782 dDocent_Contig_4870 8 . G T 419.746 . AB=0.267606;ABP=36.3164;AC=2;AF=0.333333;AN=6;AO=19;CIGAR=1X;DP=98;DPB=98;DPRA=1.31481;EPP=44.2683;EPPR=174.557;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=735;QR=3049;RO=79;RPL=0;RPP=44.2683;RPPR=174.557;RPR=19;RUN=1;SAF=19;SAP=44.2683;SAR=0;SRF=79;SRP=174.557;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:51:35,16:35:1355:16:618:-40.6075,0,-106.882 0/0:27:27,0:27:1037:0:0:0,-8.12781,-93.6388 0/1:20:17,3:17:657:3:117:-4.88978,0,-53.4467 dDocent_Contig_4871 77 . C T 7577.01 . AB=0.347518;ABP=202.339;AC=3;AF=0.5;AN=6;AO=343;CIGAR=1X;DP=987;DPB=987;DPRA=0;EPP=747.825;EPPR=1397.1;GTI=0;LEN=1;MEANALT=1.66667;MQM=55.9213;MQMR=59.5078;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=0.996885;PAO=0;PQA=0;PQR=0;PRO=0;QA=11962;QR=21295;RO=642;RPL=343;RPP=747.825;RPPR=1397.1;RPR=0;RUN=1;SAF=343;SAP=747.825;SAR=0;SRF=642;SRP=1397.1;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:339:225,114:225:7477:114:3998:-256.658,0,-570.836 0/1:299:201,97:201:6731:97:3323:-204.031,0,-515.936 0/1:349:216,132:216:7087:132:4641:-302.535,0,-533.064 dDocent_Contig_4875 10 . C G 158.288 . AB=0.138298;ABP=109.828;AC=2;AF=0.333333;AN=6;AO=15;CIGAR=1X;DP=182;DPB=182;DPRA=0;EPP=35.5824;EPPR=321.353;GTI=0;LEN=1;MEANALT=1.33333;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=0.939759;PAO=0;PQA=0;PQR=0;PRO=0;QA=601;QR=6572;RO=166;RPL=0;RPP=35.5824;RPPR=363.475;RPR=15;RUN=1;SAF=15;SAP=35.5824;SAR=0;SRF=161;SRP=321.353;SRR=5;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:88:85,2:85:3384:2:81:0,-18.8919,-296.941 0/1:43:39,4:39:1501:4:158:-1.65598,0,-122.395 0/1:51:42,9:42:1687:9:362:-17.5917,0,-136.703 dDocent_Contig_4876 8 . A G 44991.6 . AB=0.219529;ABP=2004.3;AC=6;AF=1;AN=6;AO=643;CIGAR=1M1X2M;DP=2929;DPB=2929;DPRA=0;EPP=1399.27;EPPR=556.736;GTI=0;LEN=1;MEANALT=22;MQM=58.311;MQMR=59.8196;NS=3;NUMALT=5;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=24285;QR=9793;RO=255;RPL=0;RPP=1399.27;RPPR=556.736;RPR=643;RUN=1;SAF=643;SAP=1399.27;SAR=0;SRF=255;SRP=556.736;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 1|1:1037:126,43,49,110,376,178:126:4847:43,49,110,376,178:1645,1880,4217,14354,6778:-1288.5,-1196.49,-1581.46,-1173.39,-1441.36,-1556.56,-981.171,-1249.14,-1226.05,-1345.98,-156.997,-424.968,-401.875,-209.653,-441.728,-771.518,-1039.49,-1016.4,-824.174,0,-1115.85 1|1:762:35,32,41,58,317,183:35:1334:32,41,58,317,183:1209,1576,2226,11679,6874:-1386.87,-1302.19,-1401.99,-1276.31,-1290.53,-1373.4,-1216.06,-1230.28,-1204.4,-1308.04,-451.924,-466.145,-440.266,-380.018,-465.93,-836.045,-850.266,-824.386,-764.138,0,-890.388 1|1:1130:94,59,52,109,419,282:94:3612:59,52,109,419,282:2273,1967,4188,15874,10633:-1829.32,-1684.43,-1963.11,-1697.44,-1820.7,-1978.23,-1515.16,-1638.42,-1651.43,-1778.79,-571.398,-694.657,-707.665,-525.381,-741.707,-989.777,-1113.04,-1126.04,-943.761,0,-1201.33 dDocent_Contig_4878 53 . C T 84.4051 . AB=0.119658;ABP=150.021;AC=3;AF=0.5;AN=6;AO=14;CIGAR=1X;DP=117;DPB=117;DPRA=0;EPP=33.4109;EPPR=226.672;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=0.990291;PAO=0;PQA=0;PQR=0;PRO=0;QA=534;QR=3792;RO=103;RPL=14;RPP=33.4109;RPPR=226.672;RPR=0;RUN=1;SAF=14;SAP=33.4109;SAR=0;SRF=103;SRP=226.672;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:59:52,7:52:1987:7:273:-7.17724,0,-161.305 0/1:11:9,2:9:342:2:76:-3.90334,0,-27.8249 0/1:47:42,5:42:1463:5:185:-2.86161,0,-117.804 dDocent_Contig_4879 14 . T G 347.519 . AB=0.333333;ABP=13.1438;AC=3;AF=0.5;AN=6;AO=14;CIGAR=1X;DP=42;DPB=42;DPRA=0;EPP=33.4109;EPPR=63.8115;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=555;QR=1112;RO=28;RPL=0;RPP=33.4109;RPPR=63.8115;RPR=14;RUN=1;SAF=14;SAP=33.4109;SAR=0;SRF=28;SRP=63.8115;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:19:8,11:8:319:11:435:-33.7852,0,-23.3577 0/1:10:8,2:8:316:2:79:-4.48694,0,-25.7953 0/1:13:12,1:12:477:1:41:-0.181177,0,-39.3655 dDocent_Contig_4880 21 . A T 398.814 . AB=0.129032;ABP=188.286;AC=2;AF=0.333333;AN=6;AO=20;CIGAR=1M1I7M1X1M1X2M1X;DP=155;DPB=157.786;DPRA=0;EPP=46.4397;EPPR=252.73;GTI=0;LEN=1;MEANALT=2.33333;MQM=60;MQMR=60;NS=3;NUMALT=3;ODDS=1.38778e-17;PAIRED=0.65;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=709;QR=4458;RO=115;RPL=0;RPP=46.4397;RPPR=252.73;RPR=20;RUN=1;SAF=20;SAP=46.4397;SAR=0;SRF=115;SRP=252.73;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|1:55:39,10,5,0:39:1512:10,5,0:366,169,0:-18.2068,0,-121.286,-16.2482,-110.601,-138.998,-29.9469,-124.296,-140.503,-154.199 0|1:40:33,5,0,2:33:1284:5,0,2:193,0,71:-5.938,0,-104.05,-15.872,-105.555,-121.405,-10.0956,-99.772,-115.622,-115.02 0|0:60:43,5,0,12:43:1662:5,0,12:150,0,420:-21.2595,-22.2306,-157.259,-34.2038,-158.764,-170.745,0,-124.603,-136.582,-132.97 dDocent_Contig_4881 40 . T G 6123.74 . AB=0.860577;ABP=237.905;AC=4;AF=0.666667;AN=6;AO=193;CIGAR=1X;DP=222;DPB=222;DPRA=0;EPP=422.104;EPPR=65.983;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=7534;QR=1057;RO=29;RPL=0;RPP=422.104;RPPR=65.983;RPR=193;RUN=1;SAF=193;SAP=422.104;SAR=0;SRF=29;SRP=65.983;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:156:18,138:18:663:138:5369:-436.129,0,-13.0369 1/1:14:0,14:0:0:14:552:-50.0212,-4.21442,0 0/1:52:11,41:11:394:41:1613:-129.747,0,-20.1441 dDocent_Contig_4882 33 . C G 6749.07 . AB=0.84153;ABP=188.416;AC=4;AF=0.666667;AN=6;AO=205;CIGAR=1X;DP=235;DPB=235;DPRA=0;EPP=448.162;EPPR=68.1545;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=1.38778e-17;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=8192;QR=1202;RO=30;RPL=0;RPP=448.162;RPPR=68.1545;RPR=205;RUN=1;SAF=205;SAP=448.162;SAR=0;SRF=30;SRP=68.1545;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:122:15,107:15:601:107:4307:-350.847,0,-17.7038 1/1:52:1,51:1:41:51:1997:-175.823,-11.559,0 0/1:61:14,47:14:560:47:1888:-151.76,0,-32.3811 dDocent_Contig_4883 87 . C G 133.332 . AB=0.1625;ABP=82.1605;AC=2;AF=0.333333;AN=6;AO=14;CIGAR=1X;DP=100;DPB=100;DPRA=0;EPP=33.4109;EPPR=189.757;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=0;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=482;QR=2919;RO=86;RPL=14;RPP=33.4109;RPPR=189.757;RPR=0;RUN=1;SAF=14;SAP=33.4109;SAR=0;SRF=86;SRP=189.757;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:46:37,9:37:1256:9:308:-14.2048,0,-99.4916 0/1:34:30,4:30:1023:4:139:-2.61767,0,-82.1428 0/0:20:19,1:19:640:1:35:0,-2.52197,-54.4175 dDocent_Contig_4884 188 . A G 118.671 . AB=0.160714;ABP=59.0033;AC=2;AF=0.333333;AN=6;AO=9;CIGAR=1X;DP=119;DPB=119;DPRA=0.444444;EPP=22.5536;EPPR=241.872;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=350;QR=4332;RO=110;RPL=9;RPP=22.5536;RPPR=241.872;RPR=0;RUN=1;SAF=0;SAP=22.5536;SAR=9;SRF=0;SRP=241.872;SRR=110;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:63:63,0:63:2473:0:0:0,-18.9649,-222.711 0/1:38:32,6:32:1249:6:229:-9.52852,0,-101.241 0/1:18:15,3:15:610:3:121:-5.86145,0,-49.8191 dDocent_Contig_4885 26 . T A 1789.2 . AB=0.299578;ABP=85.7003;AC=3;AF=0.5;AN=6;AO=71;CIGAR=1X;DP=237;DPB=237;DPRA=0;EPP=157.185;EPPR=363.475;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=2832;QR=6592;RO=166;RPL=0;RPP=157.185;RPPR=363.475;RPR=71;RUN=1;SAF=71;SAP=157.185;SAR=0;SRF=166;SRP=363.475;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:158:104,54:104:4121:54:2150:-146.113,0,-323.296 0/1:27:19,8:19:751:8:325:-21.4918,0,-59.7822 0/1:52:43,9:43:1720:9:357:-16.8379,0,-139.365 dDocent_Contig_4886 8 . G A 2409.77 . AB=0.292169;ABP=127.569;AC=3;AF=0.5;AN=6;AO=97;CIGAR=1X2M;DP=332;DPB=332;DPRA=0;EPP=213.643;EPPR=424.276;GTI=0;LEN=1;MEANALT=2.66667;MQM=60;MQMR=60;NS=3;NUMALT=2;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=3675;QR=7419;RO=194;RPL=0;RPP=213.643;RPPR=424.276;RPR=97;RUN=1;SAF=97;SAP=213.643;SAR=0;SRF=194;SRP=424.276;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|1:187:105,28,53:105:4028:28,53:1075,2018:-133.914,-77.2776,-399.469,0,-242.375,-314.664 0|1:26:21,2,2:21:801:2,2:78,59:-0.13267,0,-65.1954,-1.76776,-61.0971,-66.9079 0|1:119:68,9,42:68:2590:9,42:351,1598:-110.584,-102.199,-311.936,0,-183.583,-199.794 dDocent_Contig_4887 45 . G C 985.623 . AB=0.702128;ABP=19.6891;AC=3;AF=0.5;AN=6;AO=33;CIGAR=1X;DP=47;DPB=47;DPRA=0;EPP=74.6689;EPPR=33.4109;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=1302;QR=537;RO=14;RPL=0;RPP=74.6689;RPPR=33.4109;RPR=33;RUN=1;SAF=33;SAP=74.6689;SAR=0;SRF=14;SRP=33.4109;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:20:6,14:6:222:14:545:-43.3623,0,-14.3107 0/1:10:2,8:2:81:8:325:-26.6091,0,-4.67543 0/1:17:6,11:6:234:11:432:-34.1134,0,-16.312 dDocent_Contig_4888 8 . G C 290.311 . AB=0.220588;ABP=49.1222;AC=2;AF=0.333333;AN=6;AO=15;CIGAR=1X;DP=93;DPB=93;DPRA=1.36;EPP=35.5824;EPPR=172.385;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=564;QR=2980;RO=78;RPL=0;RPP=35.5824;RPPR=172.385;RPR=15;RUN=1;SAF=15;SAP=35.5824;SAR=0;SRF=78;SRP=172.385;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:36:24,12:24:916:12:456:-30.55,0,-71.9187 0/1:32:29,3:29:1100:3:108:-0.441166,0,-89.6702 0/0:25:25,0:25:964:0:0:0,-7.52575,-87.0739 dDocent_Contig_4889 27 . G C 3640.92 . AB=0.731092;ABP=58.2095;AC=4;AF=0.666667;AN=6;AO=112;CIGAR=1X;DP=146;DPB=146;DPRA=0;EPP=246.215;EPPR=74.6689;GTI=0;LEN=1;MEANALT=1.33333;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=4517;QR=1331;RO=33;RPL=0;RPP=246.215;RPPR=74.6689;RPR=112;RUN=1;SAF=112;SAP=246.215;SAR=0;SRF=33;SRP=74.6689;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:99:20,79:20:812:79:3179:-256.363,0,-43.5921 1/1:27:1,25:1:38:25:1011:-87.4724,-4.4241,0 0/1:20:12,8:12:481:8:327:-23.7795,0,-37.6199 dDocent_Contig_4890 7 . A G 84.9902 . AB=0.164557;ABP=80.2213;AC=2;AF=0.333333;AN=6;AO=15;CIGAR=1X;DP=120;DPB=120;DPRA=0;EPP=35.5824;EPPR=231.015;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=6.93889e-18;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=463;QR=4001;RO=105;RPL=0;RPP=35.5824;RPPR=231.015;RPR=15;RUN=1;SAF=15;SAP=35.5824;SAR=0;SRF=105;SRP=231.015;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:51:42,9:42:1604:9:278:-9.96182,0,-129.278 0/1:28:24,4:24:913:4:109:-1.64844,0,-74.059 0/0:41:39,2:39:1484:2:76:0,-5.12756,-126.618 dDocent_Contig_4891 106 . N A 134.111 . AB=0;ABP=0;AC=4;AF=1;AN=4;AO=4;CIGAR=2X;DP=4;DPB=4;DPRA=0;EPP=11.6962;EPPR=0;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=0;NS=2;NUMALT=1;ODDS=0;PAIRED=0.25;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=138;QR=0;RO=0;RPL=0;RPP=11.6962;RPPR=0;RPR=4;RUN=1;SAF=0;SAP=11.6962;SAR=4;SRF=0;SRP=0;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 1|1:1:0,1:0:0:1:35:-3.49863,-0.30103,0 .:.:.:.:.:.:.:. 1|1:3:0,3:0:0:3:103:-9.61002,-0.90309,0 dDocent_Contig_4892 10 . C A 7342.32 . AB=0.331237;ABP=121.012;AC=6;AF=1;AN=6;AO=158;CIGAR=2X1M1X1M1X1M1X4M;DP=477;DPB=477;DPRA=0;EPP=346.103;EPPR=113.755;GTI=0;LEN=1;MEANALT=4.33333;MQM=60;MQMR=60;NS=3;NUMALT=5;ODDS=0;PAIRED=1;PAIREDR=0.960784;PAO=0;PQA=0;PQR=0;PRO=0;QA=6198;QR=2007;RO=51;RPL=0;RPP=346.103;RPPR=113.755;RPR=158;RUN=1;SAF=158;SAP=346.103;SAR=0;SRF=51;SRP=113.755;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 1|1:236:14,24,67,12,68,51:14:552:24,67,12,68,51:933,2650,474,2648,2065:-386.062,-313.611,-351.803,-172.19,-140.942,-197.438,-351.272,-320.023,-178.602,-393.076,-172.668,-141.42,0,-179.08,-197.614,-220.006,-188.758,-47.3356,-226.418,-47.814,-250.07 1|1:144:30,0,40,0,46,28:30:1178:0,40,0,46,28:0,1601,0,1815,1130:-175.309,-184.34,-281.226,-52.4472,-149.333,-137.292,-184.34,-281.226,-149.333,-281.226,-35.0082,-131.893,0,-131.893,-118.045,-91.1894,-188.075,-56.1815,-188.075,-38.742,-179.647 1|1:97:7,10,19,2,44,15:7:277:10,19,2,44,15:398,737,81,1735,607:-178.385,-147.72,-167.507,-119.944,-109.97,-137.022,-173.813,-163.838,-136.062,-196.008,-37.748,-27.7735,0,-53.8659,-47.3001,-130.442,-120.468,-92.6914,-146.56,-10.494,-148.724 dDocent_Contig_4893 17 . 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G A 1375 . AB=0.180365;ABP=391.694;AC=3;AF=0.5;AN=6;AO=79;CIGAR=1X2M1X;DP=438;DPB=438;DPRA=0;EPP=174.557;EPPR=782.569;GTI=0;LEN=1;MEANALT=1;MQM=56.0759;MQMR=58.4206;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=3049;QR=13590;RO=359;RPL=0;RPP=174.557;RPPR=782.569;RPR=79;RUN=1;SAF=79;SAP=174.557;SAR=0;SRF=359;SRP=782.569;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|1:288:239,49:239:9050:49:1883:-82.7237,0,-727.015 0|1:24:15,9:15:579:9:353:-24.8294,0,-45.206 0|1:126:105,21:105:3961:21:813:-35.4695,0,-318.559 dDocent_Contig_4895 159 . G A 134.43 . AB=0.153846;ABP=84.19;AC=3;AF=0.5;AN=6;AO=12;CIGAR=1X;DP=78;DPB=78;DPRA=0;EPP=3.73412;EPPR=146.327;GTI=0;LEN=1;MEANALT=1;MQM=48.75;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=0.416667;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=478;QR=2619;RO=66;RPL=5;RPP=3.73412;RPPR=146.327;RPR=7;RUN=1;SAF=0;SAP=29.068;SAR=12;SRF=0;SRP=146.327;SRR=66;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:28:23,5:23:900:5:203:-9.43446,0,-72.8643 0/1:30:27,3:27:1080:3:112:-0.465509,0,-88.4501 0/1:20:16,4:16:639:4:163:-7.52723,0,-51.8186 dDocent_Contig_4899 36 . A T 1621.2 . AB=0.445312;ABP=6.33537;AC=3;AF=0.5;AN=6;AO=57;CIGAR=1X;DP=128;DPB=128;DPRA=0;EPP=126.784;EPPR=157.185;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=6.93889e-18;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=2280;QR=2770;RO=71;RPL=0;RPP=126.784;RPPR=157.185;RPR=57;RUN=1;SAF=57;SAP=126.784;SAR=0;SRF=71;SRP=157.185;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:77:31,46:31:1197:46:1837:-142.36,0,-84.8267 0/1:14:12,2:12:476:2:82:-3.56526,0,-38.9755 0/1:37:28,9:28:1097:9:361:-21.7134,0,-87.8775 dDocent_Contig_4900 14 . G T 4512.24 . AB=0.298635;ABP=209.397;AC=3;AF=0.5;AN=6;AO=175;CIGAR=1X3M1X;DP=586;DPB=586;DPRA=0;EPP=383.018;EPPR=834.684;GTI=0;LEN=1;MEANALT=3.66667;MQM=60;MQMR=60;NS=3;NUMALT=2;ODDS=0;PAIRED=1;PAIREDR=0.97389;PAO=0;PQA=0;PQR=0;PRO=0;QA=6949;QR=14934;RO=383;RPL=0;RPP=383.018;RPPR=834.684;RPR=175;RUN=1;SAF=175;SAP=383.018;SAR=0;SRF=383;SRP=834.684;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|1:335:219,100,8:219:8524:100,8:3948,318:-258.909,0,-670.395,-298.654,-674.317,-996.748 0|1:112:74,29,7:74:2884:29,7:1162,278:-73.4573,0,-228.301,-72.8489,-214.145,-307.774 0|1:139:90,46,3:90:3526:46,3:1839,122:-124.38,0,-276.082,-141.409,-279.865,-430.444 dDocent_Contig_4901 54 . T A 1957.15 . AB=0.056338;ABP=124.399;AC=0;AF=0;AN=6;AO=4;CIGAR=2X;DP=102;DPB=102;DPRA=0;EPP=11.6962;EPPR=65.983;GTI=0;LEN=1;MEANALT=2;MQM=60;MQMR=60;NS=3;NUMALT=2;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=158;QR=1009;RO=29;RPL=4;RPP=11.6962;RPPR=65.983;RPR=0;RUN=1;SAF=4;SAP=11.6962;SAR=0;SRF=29;SRP=65.983;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|0:45:19,2,24:19:671:2,24:76,890:-67.0873,-66.5732,-120.603,0,-48.3803,-47.391 0|0:26:5,2,19:5:182:2,19:82,715:-57.0475,-51.7813,-66.0421,0,-8.05159,-9.11323 0|0:31:5,0,26:5:156:0,26:0,957:-77.1034,-78.6086,-91.1291,0,-12.8414,-5.01461 dDocent_Contig_4904 1 . N G 77.8076 . AB=0;ABP=0;AC=2;AF=1;AN=2;AO=2;CIGAR=1X;DP=2;DPB=2;DPRA=0;EPP=7.35324;EPPR=0;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=0;NS=1;NUMALT=1;ODDS=5.99146;PAIRED=1;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=82;QR=0;RO=0;RPL=0;RPP=7.35324;RPPR=0;RPR=2;RUN=1;SAF=2;SAP=7.35324;SAR=0;SRF=0;SRP=0;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL ./.:.:.:.:.:.:.:. ./.:.:.:.:.:.:.:. 1/1:2:0,2:0:0:2:82:-7.77968,-0.60206,0 dDocent_Contig_4905 68 . T A 83.6897 . AB=0.147541;ABP=68.8308;AC=2;AF=0.333333;AN=6;AO=9;CIGAR=1X;DP=94;DPB=94;DPRA=0.924242;EPP=22.5536;EPPR=187.585;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=321;QR=3335;RO=85;RPL=9;RPP=22.5536;RPPR=187.585;RPR=0;RUN=1;SAF=9;SAP=22.5536;SAR=0;SRF=85;SRP=187.585;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:33:33,0:33:1316:0:0:0,-9.93399,-118.703 0/1:30:27,3:27:1073:3:108:-1.03979,0,-87.8317 0/1:31:25,6:25:946:6:213:-10.1773,0,-76.1172 dDocent_Contig_4906 7 . A T 354.882 . AB=0.137056;ABP=228.414;AC=2;AF=0.333333;AN=6;AO=27;CIGAR=1M1X1M;DP=197;DPB=203;DPRA=0;EPP=61.6401;EPPR=337.417;GTI=0;LEN=1;MEANALT=2;MQM=60;MQMR=60;NS=3;NUMALT=2;ODDS=2.77556e-17;PAIRED=0.814815;PAIREDR=0.961039;PAO=0;PQA=0;PQR=0;PRO=0;QA=1039;QR=5880;RO=154;RPL=0;RPP=61.6401;RPPR=337.417;RPR=27;RUN=1;SAF=27;SAP=61.6401;SAR=0;SRF=154;SRP=337.417;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|1:89:63,10,14:63:2429:10,14:381,542:-25.5672,-13.2783,-209.739,0,-168.224,-195.263 0|1:60:51,0,9:51:1921:0,9:0,346:-13.437,-28.7895,-186.194,0,-157.787,-155.078 0|0:48:40,4,4:40:1530:4,4:152,151:-0.425836,0,-124.352,-0.0922784,-113.18,-124.442 dDocent_Contig_4907 19 . T C 20879.5 . AB=0.350345;ABP=144.048;AC=6;AF=1;AN=6;AO=254;CIGAR=2M1X2M;DP=725;DPB=713.6;DPRA=0;EPP=554.564;EPPR=72.4974;GTI=0;LEN=1;MEANALT=3.66667;MQM=60;MQMR=60;NS=3;NUMALT=3;ODDS=5.55112e-17;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=10254;QR=1250;RO=32;RPL=0;RPP=554.564;RPPR=72.4974;RPR=254;RUN=1;SAF=254;SAP=554.564;SAR=0;SRF=32;SRP=72.4974;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 1|1:455:16,5,261,168:16:625:5,261,168:203,10354,6777:-1354.69,-1342.76,-1392.63,-507.26,-541.889,-480.062,-800.881,-835.51,0,-801.68 1|1:100:5,5,67,23:5:197:5,67,23:198,2670,929:-278.737,-263.946,-278.648,-60.382,-60.2927,-56.4194,-203.658,-203.569,0,-212.942 1|1:170:11,9,87,63:11:428:9,87,63:351,3500,2548:-460.052,-434.514,-466.972,-174.922,-181.24,-183.899,-253.285,-259.602,0,-269.487 dDocent_Contig_4908 21 . G A 138.016 . AB=0.272727;ABP=12.8806;AC=1;AF=0.166667;AN=6;AO=6;CIGAR=1X;DP=59;DPB=59;DPRA=1.18919;EPP=16.0391;EPPR=118.098;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=243;QR=2120;RO=53;RPL=0;RPP=16.0391;RPPR=118.098;RPR=6;RUN=1;SAF=6;SAP=16.0391;SAR=0;SRF=53;SRP=118.098;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:13:13,0:13:519:0:0:0,-3.91339,-47.0539 0/1:22:16,6:16:648:6:243:-15.6255,0,-52.0311 0/0:24:24,0:24:953:0:0:0,-7.22472,-86.0725 dDocent_Contig_4909 73 . G A 199.211 . AB=0.229167;ABP=33.5919;AC=2;AF=0.333333;AN=6;AO=11;CIGAR=1X;DP=62;DPB=62;DPRA=1.71429;EPP=26.8965;EPPR=113.755;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=400;QR=1851;RO=51;RPL=11;RPP=26.8965;RPPR=113.755;RPR=0;RUN=1;SAF=11;SAP=26.8965;SAR=0;SRF=51;SRP=113.755;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:21:19,2:19:674:2:72:-0.515006,0,-54.664 0/1:27:18,9:18:665:9:328:-21.7403,0,-52.0493 0/0:14:14,0:14:512:0:0:0,-4.21442,-46.4203 dDocent_Contig_4910 153 . T G 720.428 . AB=0.402985;ABP=8.4876;AC=3;AF=0.5;AN=6;AO=27;CIGAR=1X;DP=67;DPB=67;DPRA=0;EPP=61.6401;EPPR=89.8692;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=1074;QR=1600;RO=40;RPL=0;RPP=61.6401;RPPR=89.8692;RPR=27;RUN=1;SAF=0;SAP=61.6401;SAR=27;SRF=0;SRP=89.8692;SRR=40;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:25:15,10:15:601:10:405:-29.2838,0,-46.902 0/1:19:12,7:12:472:7:266:-18.5762,0,-37.1092 0/1:23:13,10:13:527:10:403:-29.7057,0,-40.8536 dDocent_Contig_4911 8 . A G 12216.2 . AB=0.483034;ABP=4.26291;AC=3;AF=0.5;AN=6;AO=242;CIGAR=2M1X5M;DP=501;DPB=554.375;DPRA=0;EPP=528.507;EPPR=105.07;GTI=0;LEN=1;MEANALT=3;MQM=60;MQMR=60;NS=3;NUMALT=2;ODDS=0;PAIRED=0.983471;PAIREDR=1;PAO=0;PQA=0;PQR=16;PRO=0.5;QA=9253;QR=1790;RO=47;RPL=0;RPP=528.507;RPPR=105.07;RPR=242;RUN=1;SAF=242;SAP=528.507;SAR=0;SRF=47;SRP=105.07;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|1:236:14,103,116:14:536:103,116:3841,4453:-631.756,-321.537,-334.519,-270.439,0,-279.508 0|1:136:14,64,58:14:515:64,58:2362,2187:-326.085,-137.123,-159.96,-151.074,0,-175.718 0|1:129:19,40,68:19:739:40,68:1482,2613:-269.299,-153.777,-202.468,-60.4995,0,-100.767 dDocent_Contig_4913 96 . T G 1197.96 . AB=0.191537;ABP=374.09;AC=3;AF=0.5;AN=6;AO=86;CIGAR=1X;DP=449;DPB=449;DPRA=0;EPP=189.757;EPPR=791.255;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=2884;QR=12314;RO=363;RPL=86;RPP=189.757;RPPR=791.255;RPR=0;RUN=1;SAF=86;SAP=189.757;SAR=0;SRF=363;SRP=791.255;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:208:168,40:168:5689:40:1348:-59.0017,0,-449.551 0/1:141:110,31:110:3731:31:1031:-50.6494,0,-293.569 0/1:100:85,15:85:2894:15:505:-15.6679,0,-230.604 dDocent_Contig_4915 98 . N T 4173.82 . AB=0;ABP=0;AC=6;AF=1;AN=6;AO=132;CIGAR=1X;DP=134;DPB=134;DPRA=0;EPP=289.645;EPPR=0;GTI=0;LEN=1;MEANALT=1.66667;MQM=60;MQMR=0;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=4625;QR=0;RO=0;RPL=132;RPP=289.645;RPPR=0;RPR=0;RUN=1;SAF=132;SAP=289.645;SAR=0;SRF=0;SRP=0;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 1/1:86:0,84:0:0:84:2930:-263.713,-25.2865,0 1/1:35:0,35:0:0:35:1232:-111.185,-10.5361,0 1/1:13:0,13:0:0:13:463:-42.0073,-3.91339,0 dDocent_Contig_4916 8 . G A 279.228 . AB=0.147651;ABP=163.685;AC=2;AF=0.333333;AN=6;AO=23;CIGAR=1X;DP=167;DPB=167;DPRA=0;EPP=52.9542;EPPR=315.702;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=6.93889e-18;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=879;QR=5495;RO=144;RPL=0;RPP=52.9542;RPPR=315.702;RPR=23;RUN=1;SAF=23;SAP=52.9542;SAR=0;SRF=144;SRP=315.702;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:101:88,13:88:3351:13:502:-15.1241,0,-271.324 0/0:18:17,1:17:653:1:39:0,-1.52198,-55.2101 0/1:48:39,9:39:1491:9:338:-16.3215,0,-120.015 dDocent_Contig_4919 16 . A G 4370.67 . AB=0.0714286;ABP=271.032;AC=1;AF=0.166667;AN=6;AO=12;CIGAR=1X1M1X;DP=168;DPB=168;DPRA=0;EPP=29.068;EPPR=50.7827;GTI=0;LEN=1;MEANALT=2;MQM=60;MQMR=60;NS=3;NUMALT=2;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=456;QR=869;RO=22;RPL=0;RPP=29.068;RPPR=50.7827;RPR=12;RUN=1;SAF=12;SAP=29.068;SAR=0;SRF=22;SRP=50.7827;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|0:94:11,8,75:11:437:8,75:308,3018:-245.426,-223.451,-257.019,0,-10.701,-13.4068 1|0:35:1,3,31:1:41:3,31:119,1238:-108.064,-98.5696,-101.051,-6.39856,0,-0.454006 0|0:39:10,1,28:10:391:1,28:29,1100:-87.5494,-88.2546,-120.099,0,-29.9374,-23.8081 dDocent_Contig_4920 32 . C T 4534.49 . AB=0.0743802;ABP=193.4;AC=0;AF=0;AN=6;AO=9;CIGAR=2X1M1X;DP=323;DPB=323;DPRA=0;EPP=22.5536;EPPR=343.931;GTI=0;LEN=1;MEANALT=2;MQM=60;MQMR=60;NS=3;NUMALT=2;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=350;QR=6182;RO=157;RPL=0;RPP=22.5536;RPPR=343.931;RPR=9;RUN=1;SAF=9;SAP=22.5536;SAR=0;SRF=157;SRP=343.931;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|0:202:119,0,83:119:4686:0,83:0,3262:-232.849,-268.672,-654.155,0,-385.876,-360.89 0|0:58:25,3,30:25:981:3,30:112,1161:-87.8416,-86.198,-165.977,0,-71.5282,-71.6658 0|0:63:13,6,44:13:515:6,44:238,1729:-138.282,-122.603,-163.184,0,-22.7944,-29.1407 dDocent_Contig_4923 16 . T C 4188.99 . AB=0.814815;ABP=142.467;AC=3;AF=0.5;AN=6;AO=132;CIGAR=1X;DP=162;DPB=162;DPRA=0;EPP=289.645;EPPR=68.1545;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=6.93889e-18;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=5246;QR=1200;RO=30;RPL=0;RPP=289.645;RPPR=68.1545;RPR=132;RUN=1;SAF=132;SAP=289.645;SAR=0;SRF=30;SRP=68.1545;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:121:20,101:20:803:101:4005:-324.006,0,-36.1632 0/1:21:8,13:8:316:13:519:-40.7354,0,-22.4817 0/1:20:2,18:2:81:18:722:-59.2834,0,-1.66513 dDocent_Contig_4924 25 . A T 37.0182 . AB=0.116279;ABP=58.0041;AC=2;AF=0.333333;AN=6;AO=5;CIGAR=1X;DP=62;DPB=62;DPRA=1.13158;EPP=13.8677;EPPR=126.784;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=205;QR=2268;RO=57;RPL=0;RPP=13.8677;RPPR=126.784;RPR=5;RUN=1;SAF=5;SAP=13.8677;SAR=0;SRF=57;SRP=126.784;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:19:19,0:19:746:0:0:0,-5.71957,-67.461 0/1:11:10,1:10:400:1:41:-0.783237,0,-33.0477 0/1:32:28,4:28:1122:4:164:-5.51694,0,-91.6264 dDocent_Contig_4925 118 . T C 150.773 . AB=0.210526;ABP=44.4969;AC=3;AF=0.5;AN=6;AO=12;CIGAR=1X;DP=57;DPB=57;DPRA=0;EPP=29.068;EPPR=100.727;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=408;QR=1556;RO=45;RPL=0;RPP=29.068;RPPR=100.727;RPR=12;RUN=1;SAF=0;SAP=29.068;SAR=12;SRF=0;SRP=100.727;SRR=45;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:25:20,5:20:695:5:167:-7.83321,0,-55.3482 0/1:13:11,2:11:380:2:70:-2.73401,0,-30.6196 0/1:19:14,5:14:481:5:171:-10.007,0,-37.8982 dDocent_Contig_4926 13 . C A 326.509 . AB=0.16;ABP=128.521;AC=2;AF=0.333333;AN=6;AO=20;CIGAR=1X;DP=147;DPB=147;DPRA=2.84091;EPP=46.4397;EPPR=278.787;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=812;QR=5111;RO=127;RPL=0;RPP=46.4397;RPPR=278.787;RPR=20;RUN=1;SAF=20;SAP=46.4397;SAR=0;SRF=127;SRP=278.787;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:90:74,16:74:2972:16:649:-31.651,0,-240.47 0/0:22:22,0:22:883:0:0:0,-6.62266,-79.7788 0/1:35:31,4:31:1256:4:163:-4.52238,0,-102.769 dDocent_Contig_4927 120 . T G 6293.7 . AB=0.847291;ABP=215.676;AC=4;AF=0.666667;AN=6;AO=227;CIGAR=1X;DP=263;DPB=263;DPRA=0;EPP=495.935;EPPR=79.0118;GTI=0;LEN=1;MEANALT=1.33333;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=7855;QR=1284;RO=35;RPL=0;RPP=495.935;RPPR=79.0118;RPR=227;RUN=1;SAF=0;SAP=495.935;SAR=227;SRF=0;SRP=79.0118;SRR=35;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:149:25,124:25:914:124:4303:-342.595,0,-37.7268 0/1:54:6,48:6:222:48:1654:-132.885,0,-4.08244 1/1:60:4,55:4:148:55:1898:-157.412,-4.43265,0 dDocent_Contig_4928 52 . G A 1010.8 . AB=0.454545;ABP=4.39215;AC=2;AF=0.333333;AN=6;AO=36;CIGAR=1X;DP=93;DPB=93;DPRA=0;EPP=81.1833;EPPR=126.784;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=6.93889e-18;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=1450;QR=2185;RO=57;RPL=36;RPP=81.1833;RPPR=126.784;RPR=0;RUN=1;SAF=36;SAP=81.1833;SAR=0;SRF=57;SRP=126.784;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:70:36,34:36:1380:34:1370:-102.481,0,-103.394 0/1:7:6,1:6:241:1:41:-1.98736,0,-19.9591 0/0:16:15,1:15:564:1:39:0,-0.919915,-47.1919 dDocent_Contig_4929 9 . A C 191.506 . AB=0.238095;ABP=28.0339;AC=2;AF=0.333333;AN=6;AO=10;CIGAR=1X;DP=48;DPB=48;DPRA=3.5;EPP=24.725;EPPR=83.3548;GTI=0;LEN=1;MEANALT=1.5;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=3.46945e-18;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=385;QR=1396;RO=37;RPL=0;RPP=24.725;RPPR=83.3548;RPR=10;RUN=1;SAF=10;SAP=24.725;SAR=0;SRF=37;SRP=83.3548;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:32:23,8:23:871:8:307:-18.2797,0,-68.9994 0/1:10:8,2:8:302:2:78:-4.39317,0,-24.5264 0/0:6:6,0:6:223:0:0:0,-1.80618,-20.4281 dDocent_Contig_4930 56 . A T 931.299 . AB=0.533333;ABP=3.58936;AC=3;AF=0.5;AN=6;AO=32;CIGAR=1X;DP=60;DPB=60;DPRA=0;EPP=72.4974;EPPR=61.6401;GTI=0;LEN=1;MEANALT=1.33333;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=1286;QR=1032;RO=27;RPL=32;RPP=72.4974;RPPR=61.6401;RPR=0;RUN=1;SAF=32;SAP=72.4974;SAR=0;SRF=27;SRP=61.6401;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:41:13,27:13:484:27:1084:-85.4049,0,-31.448 0/1:11:9,2:9:347:2:82:-4.46835,0,-28.276 0/1:8:5,3:5:201:3:120:-8.77907,0,-16.0623 dDocent_Contig_4931 13 . G A 39.1403 . AB=0.148148;ABP=32.0437;AC=1;AF=0.166667;AN=6;AO=5;CIGAR=1X;DP=70;DPB=70;DPRA=2.19231;EPP=13.8677;EPPR=144.156;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=189;QR=2618;RO=65;RPL=0;RPP=13.8677;RPPR=144.156;RPR=5;RUN=1;SAF=5;SAP=13.8677;SAR=0;SRF=65;SRP=144.156;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:30:29,1:29:1172:1:39:0,-5.13434,-101.862 0/0:13:13,0:13:519:0:0:0,-3.91339,-47.0579 0/1:27:23,4:23:927:4:150:-5.73788,0,-75.6054 dDocent_Contig_4932 62 . G A 90.4613 . AB=0.307692;ABP=7.18621;AC=1;AF=0.166667;AN=6;AO=4;CIGAR=1X;DP=66;DPB=66;DPRA=0.490566;EPP=11.6962;EPPR=137.642;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=160;QR=2469;RO=62;RPL=4;RPP=11.6962;RPPR=137.642;RPR=0;RUN=1;SAF=4;SAP=11.6962;SAR=0;SRF=62;SRP=137.642;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:38:38,0:38:1513:0:0:0,-11.4391,-136.413 0/0:15:15,0:15:599:0:0:0,-4.51545,-54.248 0/1:13:9,4:9:357:4:160:-10.87,0,-28.5779 dDocent_Contig_4933 29 . A G 208.312 . AB=0.15625;ABP=101.541;AC=1;AF=0.166667;AN=6;AO=16;CIGAR=1X;DP=138;DPB=138;DPRA=5.25;EPP=37.7539;EPPR=265.758;GTI=0;LEN=1;MEANALT=1.5;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=607;QR=4852;RO=121;RPL=0;RPP=37.7539;RPPR=265.758;RPR=16;RUN=1;SAF=16;SAP=37.7539;SAR=0;SRF=121;SRP=265.758;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:96:80,15:80:3218:15:567:-22.3541,0,-260.672 0/0:12:12,0:12:471:0:0:0,-3.61236,-42.734 0/0:30:29,1:29:1163:1:40:0,-5.03522,-100.956 dDocent_Contig_4934 19 . C T 294.156 . AB=0.147887;ABP=155.931;AC=2;AF=0.333333;AN=6;AO=22;CIGAR=1X;DP=193;DPB=193;DPRA=0;EPP=50.7827;EPPR=374.332;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=0.947368;PAO=0;PQA=0;PQR=0;PRO=0;QA=870;QR=6786;RO=171;RPL=0;RPP=50.7827;RPPR=374.332;RPR=22;RUN=1;SAF=22;SAP=50.7827;SAR=0;SRF=171;SRP=374.332;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:101:87,14:87:3470:14:550:-19.4371,0,-281.943 0/1:41:34,7:34:1343:7:283:-13.5014,0,-108.789 0/0:51:50,1:50:1973:1:37:0,-11.6547,-174.076 dDocent_Contig_4935 8 . T G 1646.05 . AB=0.552381;ABP=5.51266;AC=3;AF=0.5;AN=6;AO=58;CIGAR=1X;DP=105;DPB=105;DPRA=0;EPP=128.956;EPPR=100.727;GTI=0;LEN=1;MEANALT=1.33333;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=2228;QR=1717;RO=45;RPL=0;RPP=128.956;RPPR=100.727;RPR=58;RUN=1;SAF=58;SAP=128.956;SAR=0;SRF=45;SRP=100.727;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:60:33,25:33:1269:25:955:-68.4274,0,-96.6661 0/1:12:2,10:2:72:10:377:-30.6674,0,-3.22428 0/1:33:10,23:10:376:23:896:-71.0248,0,-24.2575 dDocent_Contig_4936 35 . G T 5167.27 . AB=0.0331492;ABP=345.659;AC=1;AF=0.166667;AN=6;AO=6;CIGAR=1M1D6M1X2M;DP=227;DPB=211.364;DPRA=0;EPP=16.0391;EPPR=122.441;GTI=0;LEN=1;MEANALT=2.5;MQM=60;MQMR=60;NS=3;NUMALT=2;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=224;QR=2094;RO=55;RPL=0;RPP=16.0391;RPPR=122.441;RPR=6;RUN=1;SAF=6;SAP=16.0391;SAR=0;SRF=55;SRP=122.441;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|0:123:42,1,79:42:1613:1,79:35,3098:-242.122,-251.918,-384.017,0,-129.564,-108.63 0|0:46:11,0,35:11:408:0,35:0,1380:-110.617,-113.929,-147.303,0,-33.7502,-23.2141 1|0:58:2,5,51:2:73:5,51:189,1936:-167.656,-152.767,-157.225,-9.53958,0,-0.147227 dDocent_Contig_4937 16 . T A 1138.67 . AB=0.225532;ABP=156.778;AC=2;AF=0.333333;AN=6;AO=60;CIGAR=1X;DP=320;DPB=320;DPRA=0;EPP=133.299;EPPR=567.593;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=2343;QR=9205;RO=260;RPL=0;RPP=133.299;RPPR=567.593;RPR=60;RUN=1;SAF=60;SAP=133.299;SAR=0;SRF=260;SRP=567.593;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:201:159,42:159:5645:42:1677:-90.6555,0,-447.626 0/1:34:23,11:23:824:11:407:-26.734,0,-64.2412 0/0:85:78,7:78:2736:7:259:0,-1.93096,-222.802 dDocent_Contig_4939 14 . T A 11591.6 . AB=0.879245;ABP=334.066;AC=4;AF=0.666667;AN=6;AO=350;CIGAR=1X;DP=387;DPB=387;DPRA=0;EPP=763.026;EPPR=81.1833;GTI=0;LEN=1;MEANALT=1.33333;MQM=59.0829;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=14010;QR=1433;RO=36;RPL=0;RPP=763.026;RPPR=81.1833;RPR=350;RUN=1;SAF=350;SAP=763.026;SAR=0;SRF=36;SRP=81.1833;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:209:26,182:26:1038:182:7276:-590.968,0,-30.6982 0/1:56:5,51:5:204:51:2030:-165.965,0,-1.88635 1/1:122:5,117:5:191:117:4704:-405.536,-19.1707,0 dDocent_Contig_4940 59 . G A 3323.83 . AB=0.786765;ABP=100.152;AC=3;AF=0.5;AN=6;AO=107;CIGAR=1X;DP=136;DPB=136;DPRA=0;EPP=235.358;EPPR=65.983;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=0.953271;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=4201;QR=1147;RO=29;RPL=107;RPP=235.358;RPPR=65.983;RPR=0;RUN=1;SAF=107;SAP=235.358;SAR=0;SRF=29;SRP=65.983;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:75:11,64:11:422:64:2492:-201.84,0,-15.7473 0/1:21:8,13:8:319:13:512:-40.1025,0,-22.7549 0/1:40:10,30:10:406:30:1197:-95.9634,0,-24.8588 dDocent_Contig_4941 8 . T G 6905.58 . AB=0.0546559;ABP=854.016;AC=4;AF=0.666667;AN=6;AO=27;CIGAR=1X7M;DP=494;DPB=494;DPRA=0;EPP=61.6401;EPPR=374.332;GTI=0;LEN=1;MEANALT=4;MQM=60;MQMR=60;NS=3;NUMALT=3;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=1032;QR=6701;RO=171;RPL=0;RPP=61.6401;RPPR=374.332;RPR=27;RUN=1;SAF=27;SAP=61.6401;SAR=0;SRF=171;SRP=374.332;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|1:251:95,18,123,5:95:3718:18,123,5:688,4629,191:-350.669,-322.817,-623.107,0,-249.261,-268.683,-363.595,-612.854,-290.038,-667.799 1|1:66:8,10,44,4:8:314:10,44,4:394,1631,144:-137.616,-107.605,-130.423,-6.59277,0,-19.1755,-128.278,-121.687,-20.6794,-152.901 0|1:177:68,16,74,18:68:2669:16,74,18:631,2786,697:-207.795,-176.345,-391.044,0,-167.593,-197.235,-171.006,-338.602,-162.254,-385.102 dDocent_Contig_4942 11 . G A 16919.5 . AB=0.880816;ABP=1546.07;AC=5;AF=0.833333;AN=6;AO=2392;CIGAR=1X;DP=2628;DPB=2628;DPRA=0;EPP=5188.49;EPPR=513.306;GTI=0;LEN=1;MEANALT=1.33333;MQM=11.2559;MQMR=51.1277;NS=3;NUMALT=1;ODDS=0;PAIRED=0;PAIREDR=0.804255;PAO=0;PQA=0;PQR=0;PRO=0;QA=95087;QR=9276;RO=235;RPL=0;RPP=5197.17;RPPR=513.306;RPR=2392;RUN=1;SAF=2391;SAP=5188.49;SAR=1;SRF=235;SRP=513.306;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:1225:146,1079:146:5738:1079:42844:-691.127,0,-78.2346 1/1:518:28,490:28:1092:490:19467:-438.456,-65.0445,0 1/1:885:61,823:61:2446:823:32776:-563.885,-72.7397,0 dDocent_Contig_4943 13 . G A 81.5408 . AB=0.375;ABP=6.26751;AC=1;AF=0.166667;AN=6;AO=9;CIGAR=1M3X2M1X7M;DP=37;DPB=32.7143;DPRA=0;EPP=22.5536;EPPR=39.9253;GTI=0;LEN=1;MEANALT=3;MQM=18.1111;MQMR=60;NS=3;NUMALT=3;ODDS=0;PAIRED=0.333333;PAIREDR=0.941176;PAO=0;PQA=0;PQR=0;PRO=0;QA=161;QR=657;RO=17;RPL=0;RPP=22.5536;RPPR=39.9253;RPR=9;RUN=1;SAF=9;SAP=22.5536;SAR=0;SRF=17;SRP=39.9253;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|0:19:7,7,4,0:7:269:7,4,0:113,146,0:-4.48729,-0.229902,-20.3124,0,-15.8977,-20.9934,-6.5945,-22.4196,-22.1976,-28.7573 1|0:5:0,2,2,0:0:0:2,2,0:48,81,0:-6.60759,-3.39307,-2.79101,-3.24934,0,-2.64728,-6.60759,-3.39307,-3.24934,-6.60759 0|0:13:10,0,0,2:10:388:0,0,2:0,0,69:-2.41952,-5.42982,-37.4081,-5.42982,-37.4081,-37.4081,0,-32.1217,-32.1217,-31.5196 dDocent_Contig_4944 12 . T C 5609.86 . AB=0.867347;ABP=232.743;AC=4;AF=0.666667;AN=6;AO=258;CIGAR=1X;DP=292;DPB=292;DPRA=0;EPP=172.722;EPPR=74.6689;GTI=0;LEN=1;MEANALT=1.33333;MQM=29.2558;MQMR=46.9091;NS=3;NUMALT=1;ODDS=0;PAIRED=0.449612;PAIREDR=0.757576;PAO=0;PQA=0;PQR=0;PRO=0;QA=10008;QR=1332;RO=33;RPL=0;RPP=563.25;RPPR=74.6689;RPR=258;RUN=1;SAF=200;SAP=172.722;SAR=58;SRF=33;SRP=74.6689;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:122:15,107:15:611:107:4219:-216.806,0,-18.6018 0/1:74:10,63:10:399:63:2375:-140.83,0,-7.95561 1/1:96:8,88:8:322:88:3414:-206.873,-18.142,0 dDocent_Contig_4945 21 . C A 677.425 . AB=0.277228;ABP=46.5472;AC=2;AF=0.333333;AN=6;AO=29;CIGAR=2X;DP=116;DPB=116;DPRA=0;EPP=65.983;EPPR=191.928;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=6.93889e-18;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=1163;QR=3510;RO=87;RPL=0;RPP=65.983;RPPR=191.928;RPR=29;RUN=1;SAF=29;SAP=65.983;SAR=0;SRF=87;SRP=191.928;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|1:87:61,26:61:2452:26:1042:-67.8817,0,-194.631 0|1:14:12,2:12:488:2:80:-3.37716,0,-40.0569 0|0:15:14,1:14:570:1:41:0,-0.420883,-47.5476 dDocent_Contig_4946 7 . G A 2983.37 . AB=0.692308;ABP=48.9453;AC=3;AF=0.5;AN=6;AO=99;CIGAR=2X;DP=143;DPB=143;DPRA=0;EPP=217.986;EPPR=59.4686;GTI=0;LEN=1;MEANALT=2.33333;MQM=60;MQMR=60;NS=3;NUMALT=2;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=3779;QR=869;RO=26;RPL=0;RPP=217.986;RPPR=59.4686;RPR=99;RUN=1;SAF=99;SAP=217.986;SAR=0;SRF=26;SRP=59.4686;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|1:64:6,54,4:6:206:54,4:2072,122:-168.342,0,-0.492343,-160.383,-6.99211,-175.9 0|1:36:10,17,8:10:341:17,8:632,253:-48.7605,0,-22.5666,-31.4337,-7.3377,-56.6818 0|1:43:10,28,5:10:322:28,5:1075,186:-85.2448,0,-17.4972,-73.0335,-10.6861,-97.4714 dDocent_Contig_4947 8 . C G 7005.53 . AB=0;ABP=0;AC=6;AF=1;AN=6;AO=218;CIGAR=1X;DP=232;DPB=232;DPRA=0;EPP=476.391;EPPR=33.4109;GTI=0;LEN=1;MEANALT=1;MQM=59.9725;MQMR=60;NS=3;NUMALT=1;ODDS=6.93889e-18;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=8328;QR=543;RO=14;RPL=0;RPP=476.391;RPPR=33.4109;RPR=218;RUN=1;SAF=218;SAP=476.391;SAR=0;SRF=14;SRP=33.4109;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 1/1:100:7,93:7:270:93:3567:-296.485,-5.43747,0 1/1:65:2,63:2:78:63:2375:-206.564,-12.1635,0 1/1:67:5,62:5:195:62:2386:-197.026,-2.24481,0 dDocent_Contig_4948 185 . T C 85.0952 . AB=0.25;ABP=11.6962;AC=1;AF=0.166667;AN=6;AO=4;CIGAR=1X;DP=79;DPB=79;DPRA=0.507937;EPP=11.6962;EPPR=165.871;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=164;QR=2869;RO=75;RPL=4;RPP=11.6962;RPPR=165.871;RPR=0;RUN=1;SAF=0;SAP=11.6962;SAR=4;SRF=0;SRP=165.871;SRR=75;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:56:56,0:56:2153:0:0:0,-16.8577,-193.952 0/0:7:7,0:7:242:0:0:0,-2.10721,-22.1076 0/1:16:12,4:12:474:4:164:-10.3334,0,-38.1903 dDocent_Contig_4950 41 . C A 387.485 . AB=0.4;ABP=6.48466;AC=2;AF=0.333333;AN=6;AO=16;CIGAR=1X;DP=59;DPB=59;DPRA=1.05263;EPP=37.7539;EPPR=96.3836;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=0.9375;PAIREDR=0.813953;PAO=0;PQA=0;PQR=0;PRO=0;QA=596;QR=1690;RO=43;RPL=0;RPP=37.7539;RPPR=96.3836;RPR=16;RUN=1;SAF=16;SAP=37.7539;SAR=0;SRF=43;SRP=96.3836;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:19:14,5:14:565:5:169:-9.81232,0,-45.4717 0/1:21:10,11:10:393:11:427:-32.4591,0,-29.405 0/0:19:19,0:19:732:0:0:0,-5.71957,-66.1883 dDocent_Contig_4951 21 . A G 53.0999 . AB=0.0949721;ABP=258.067;AC=1;AF=0.166667;AN=6;AO=17;CIGAR=1X;DP=279;DPB=279;DPRA=3.58;EPP=39.9253;EPPR=571.936;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=671;QR=10464;RO=262;RPL=0;RPP=39.9253;RPPR=571.936;RPR=17;RUN=1;SAF=17;SAP=39.9253;SAR=0;SRF=262;SRP=571.936;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:179:162,17:162:6455:17:671:-6.83287,0,-526.792 0/0:21:21,0:21:845:0:0:0,-6.32163,-76.3611 0/0:79:79,0:79:3164:0:0:0,-23.7814,-284.837 dDocent_Contig_4952 37 . T G 5527.44 . AB=0.399449;ABP=34.8885;AC=6;AF=1;AN=6;AO=145;CIGAR=4M1X;DP=363;DPB=388.6;DPRA=0;EPP=317.874;EPPR=198.443;GTI=0;LEN=1;MEANALT=3;MQM=59.9724;MQMR=60;NS=3;NUMALT=2;ODDS=5.55112e-17;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=5676;QR=3429;RO=90;RPL=0;RPP=317.874;RPPR=198.443;RPR=145;RUN=1;SAF=145;SAP=317.874;SAR=0;SRF=90;SRP=198.443;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 1|1:177:47,68,61:47:1777:68,61:2663,2376:-254.417,-49.5991,-174.78,-73.3226,0,-200.61 1|1:66:17,30,18:17:655:30,18:1182,718:-97.4767,-5.35789,-50.1034,-43.4645,0,-91.8256 1|1:120:26,27,66:26:997:27,66:1022,2582:-206.371,-130.434,-204.132,-1.93492,0,-63.8969 dDocent_Contig_4953 29 . G A 439.478 . AB=0.352941;ABP=12.5903;AC=3;AF=0.5;AN=6;AO=18;CIGAR=1X;DP=51;DPB=51;DPRA=0;EPP=42.0968;EPPR=74.6689;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=698;QR=1321;RO=33;RPL=0;RPP=42.0968;RPPR=74.6689;RPR=18;RUN=1;SAF=18;SAP=42.0968;SAR=0;SRF=33;SRP=74.6689;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:18:13,5:13:512:5:181:-11.2169,0,-41.0038 0/1:9:8,1:8:321:1:38:-1.088,0,-26.5483 0/1:24:12,12:12:488:12:479:-36.2364,0,-37.0466 dDocent_Contig_4954 23 . G A 420.998 . AB=0.160494;ABP=165.201;AC=2;AF=0.333333;AN=6;AO=26;CIGAR=1X;DP=215;DPB=215;DPRA=1.5283;EPP=59.4686;EPPR=413.419;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=1041;QR=7543;RO=189;RPL=0;RPP=59.4686;RPPR=413.419;RPR=26;RUN=1;SAF=26;SAP=59.4686;SAR=0;SRF=189;SRP=413.419;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:137:114,23:114:4535:23:918:-41.682,0,-366.834 0/1:25:22,3:22:881:3:123:-3.93904,0,-72.0745 0/0:53:53,0:53:2127:0:0:0,-15.9546,-191.607 dDocent_Contig_4955 18 . A G 309.878 . AB=0.1875;ABP=43.7254;AC=3;AF=0.5;AN=6;AO=9;CIGAR=1X2M;DP=56;DPB=56;DPRA=0;EPP=22.5536;EPPR=72.4974;GTI=0;LEN=1;MEANALT=2;MQM=60;MQMR=60;NS=3;NUMALT=2;ODDS=6.93889e-18;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=365;QR=1275;RO=32;RPL=0;RPP=22.5536;RPPR=72.4974;RPR=9;RUN=1;SAF=9;SAP=22.5536;SAR=0;SRF=32;SRP=72.4974;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|1:22:9,7,6:9:360:7,6:246,246:-17.6221,-0.347582,-27.8883,0,-9.68705,-27.8749 0|1:8:6,2,0:6:237:2,0:76,0:-4.80643,0,-19.2951,-6.61261,-19.8971,-26.1263 0|1:26:17,6,3:17:678:6,3:233,119:-14.0214,0,-54.032,-9.34093,-46.0433,-64.2819 dDocent_Contig_4957 8 . C A 986.366 . 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AB=0.190476;ABP=55.4358;AC=2;AF=0.333333;AN=6;AO=12;CIGAR=1X;DP=72;DPB=72;DPRA=3.5;EPP=29.068;EPPR=133.299;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=465;QR=2329;RO=60;RPL=0;RPP=29.068;RPPR=133.299;RPR=12;RUN=1;SAF=12;SAP=29.068;SAR=0;SRF=60;SRP=133.299;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:48:39,9:39:1530:9:359:-18.2211,0,-123.495 0/0:9:9,0:9:341:0:0:0,-2.70927,-31.0389 0/1:15:12,3:12:458:3:106:-5.37006,0,-37.0426 dDocent_Contig_4966 71 . G C 607.727 . 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T C 29341.7 . 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A G 71.8956 . AB=0.103704;ABP=187.167;AC=3;AF=0.5;AN=6;AO=14;CIGAR=1X;DP=135;DPB=135;DPRA=0;EPP=33.4109;EPPR=265.758;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=0;PAIREDR=0.991736;PAO=0;PQA=0;PQR=0;PRO=0;QA=560;QR=4771;RO=121;RPL=0;RPP=33.4109;RPPR=265.758;RPR=14;RUN=1;SAF=14;SAP=33.4109;SAR=0;SRF=121;SRP=265.758;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:92:82,10:82:3221:10:400:-8.66484,0,-262.276 0/1:22:20,2:20:803:2:78:-0.780641,0,-65.9619 0/1:21:19,2:19:747:2:82:-1.45805,0,-61.2321 dDocent_Contig_4977 71 . T A 496.894 . AB=0.171875;ABP=62.8615;AC=1;AF=0.166667;AN=6;AO=11;CIGAR=2M1X8M;DP=67;DPB=53.5455;DPRA=0;EPP=26.8965;EPPR=57.2971;GTI=0;LEN=1;MEANALT=4;MQM=60;MQMR=60;NS=3;NUMALT=4;ODDS=1.38778e-17;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=381;QR=854;RO=25;RPL=11;RPP=26.8965;RPPR=57.2971;RPR=0;RUN=1;SAF=11;SAP=26.8965;SAR=0;SRF=25;SRP=57.2971;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|0:43:17,3,13,5,4:17:581:3,13,5,4:88,431,164,140:-29.7506,-27.8579,-74.1127,0,-40.1528,-43.2496,-21.6179,-61.7666,-33.914,-67.2728,-23.4734,-63.6234,-35.7698,-57.3853,-69.431 0|0:3:0,0,2,1,0:0:0:0,2,1,0:0,64,34,0:-8.24128,-8.24128,-8.24128,-3.09788,-3.09788,-2.49582,-5.47663,-5.47663,0,-5.1756,-8.24128,-8.24128,-3.09788,-5.47663,-8.24128 0|1:21:8,0,5,0,7:8:273:0,5,0,7:0,167,0,241:-17.1761,-19.5844,-41.7399,-6.06519,-28.2207,-26.7155,-19.5844,-41.7399,-28.2207,-41.7399,0,-22.1619,-8.64197,-22.1619,-20.0547 dDocent_Contig_4978 17 . A G 4461.15 . AB=0.591398;ABP=9.75821;AC=4;AF=0.666667;AN=6;AO=142;CIGAR=1X;DP=187;DPB=187;DPRA=0;EPP=311.359;EPPR=100.727;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=5587;QR=1728;RO=45;RPL=0;RPP=311.359;RPPR=100.727;RPR=142;RUN=1;SAF=142;SAP=311.359;SAR=0;SRF=45;SRP=100.727;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 1/1:94:7,87:7:283:87:3433:-283.197,-2.45345,0 0/1:43:24,19:24:941:19:725:-52.6252,0,-72.052 0/1:50:14,36:14:504:36:1429:-113.815,0,-30.6254 dDocent_Contig_4980 81 . C A 727.108 . AB=0.1893;ABP=206.762;AC=3;AF=0.5;AN=6;AO=46;CIGAR=1X;DP=243;DPB=243;DPRA=0;EPP=102.898;EPPR=430.79;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=1.38778e-17;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=1671;QR=7380;RO=197;RPL=46;RPP=102.898;RPPR=430.79;RPR=0;RUN=1;SAF=46;SAP=102.898;SAR=0;SRF=197;SRP=430.79;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:133:111,22:111:4214:22:812:-33.3609,0,-339.295 0/1:56:46,10:46:1746:10:359:-15.7933,0,-140.536 0/1:54:40,14:40:1420:14:500:-29.0794,0,-111.836 dDocent_Contig_4981 10 . T A 1473.23 . AB=0.189394;ABP=334.851;AC=3;AF=0.5;AN=6;AO=75;CIGAR=1X;DP=396;DPB=396;DPRA=0;EPP=165.871;EPPR=700.053;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=3013;QR=12912;RO=321;RPL=0;RPP=165.871;RPPR=700.053;RPR=75;RUN=1;SAF=75;SAP=165.871;SAR=0;SRF=321;SRP=700.053;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:188:149,39:149:5973:39:1566:-84.5833,0,-480.741 0/1:98:74,24:74:2984:24:969:-58.0052,0,-239.137 0/1:110:98,12:98:3955:12:478:-10.257,0,-322.808 dDocent_Contig_4982 80 . C T 1693.36 . AB=0.102564;ABP=56.5176;AC=1;AF=0.166667;AN=6;AO=4;CIGAR=2X;DP=85;DPB=85;DPRA=0;EPP=11.6962;EPPR=44.2683;GTI=0;LEN=1;MEANALT=2;MQM=60;MQMR=60;NS=3;NUMALT=2;ODDS=6.93889e-18;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=138;QR=636;RO=19;RPL=4;RPP=11.6962;RPPR=44.2683;RPR=0;RUN=1;SAF=4;SAP=11.6962;SAR=0;SRF=19;SRP=44.2683;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|0:46:14,0,32:14:464:0,32:0,1096:-85.1,-89.3145,-126.842,0,-37.8619,-28.2289 1|0:12:0,3,9:0:0:3,9:104,311:-34.0697,-25.616,-24.7129,-8.8,0,-6.09073 0|0:27:5,1,21:5:172:1,21:34,706:-55.6888,-54.4358,-68.1055,0,-11.2153,-7.65099 dDocent_Contig_4983 32 . G C 1512.56 . AB=0.469027;ABP=3.95191;AC=3;AF=0.5;AN=6;AO=53;CIGAR=1X;DP=113;DPB=113;DPRA=0;EPP=118.098;EPPR=133.299;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=2109;QR=2378;RO=60;RPL=0;RPP=118.098;RPPR=133.299;RPR=53;RUN=1;SAF=53;SAP=118.098;SAR=0;SRF=60;SRP=133.299;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:53:28,25:28:1104:25:985:-72.997,0,-83.6948 0/1:26:17,9:17:685:9:362:-25.1174,0,-54.1516 0/1:34:15,19:15:589:19:762:-58.6647,0,-43.1078 dDocent_Contig_4984 87 . C A 1279.78 . AB=0.509615;ABP=3.09382;AC=2;AF=0.333333;AN=6;AO=53;CIGAR=1X;DP=114;DPB=114;DPRA=5.2;EPP=118.098;EPPR=135.47;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=6.93889e-18;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=1802;QR=2103;RO=61;RPL=53;RPP=118.098;RPPR=135.47;RPR=0;RUN=1;SAF=53;SAP=118.098;SAR=0;SRF=61;SRP=135.47;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:73:29,44:29:995:44:1491:-112.507,0,-67.8855 0/0:10:10,0:10:347:0:0:0,-3.0103,-31.5652 0/1:31:22,9:22:761:9:311:-18.9934,0,-59.4782 dDocent_Contig_4985 41 . A T 389.228 . AB=0.388889;ABP=6.8707;AC=1;AF=0.166667;AN=6;AO=14;CIGAR=1X;DP=81;DPB=81;DPRA=1.6;EPP=33.4109;EPPR=148.499;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=566;QR=2663;RO=67;RPL=0;RPP=33.4109;RPPR=148.499;RPR=14;RUN=1;SAF=14;SAP=33.4109;SAR=0;SRF=67;SRP=148.499;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:36:22,14:22:886:14:566:-40.4457,0,-69.2126 0/0:19:19,0:19:762:0:0:0,-5.71957,-68.9025 0/0:26:26,0:26:1015:0:0:0,-7.82678,-91.6436 dDocent_Contig_4986 35 . T A 1838.85 . AB=0.294355;ABP=94.1071;AC=3;AF=0.5;AN=6;AO=73;CIGAR=1X1M;DP=248;DPB=248;DPRA=0;EPP=161.528;EPPR=265.758;GTI=0;LEN=1;MEANALT=2;MQM=60;MQMR=60;NS=3;NUMALT=2;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=2756;QR=4716;RO=121;RPL=0;RPP=161.528;RPPR=265.758;RPR=73;RUN=1;SAF=73;SAP=161.528;SAR=0;SRF=121;SRP=265.758;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|1:123:59,27,37:59:2309:27,37:1064,1373:-94.557,-24.7737,-206.492,0,-102.297,-178.694 0|1:53:29,10,14:29:1123:10,14:396,529:-34.6163,-10.7453,-99.977,0,-59.6337,-88.0148 0|1:72:33,17,22:33:1284:17,22:648,854:-60.235,-17.0211,-117.407,0,-52.3599,-98.8856 dDocent_Contig_4990 26 . G A 1427.3 . AB=0.205357;ABP=256.375;AC=3;AF=0.5;AN=6;AO=69;CIGAR=1X;DP=336;DPB=336;DPRA=0;EPP=152.842;EPPR=582.793;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=1.38778e-17;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=2761;QR=10644;RO=267;RPL=0;RPP=152.842;RPPR=582.793;RPR=69;RUN=1;SAF=69;SAP=152.842;SAR=0;SRF=267;SRP=582.793;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:205:158,47:158:6319:47:1884:-108.049,0,-506.737 0/1:51:37,14:37:1461:14:557:-35.119,0,-116.389 0/1:80:72,8:72:2864:8:320:-5.08527,0,-233.772 dDocent_Contig_4991 7 . A T 1587.47 . AB=0.137755;ABP=226.406;AC=0;AF=0;AN=6;AO=27;CIGAR=1X1M1X2M1X2M1D4M;DP=196;DPB=193.923;DPRA=0;EPP=61.6401;EPPR=224.5;GTI=0;LEN=1;MEANALT=3;MQM=60;MQMR=60;NS=3;NUMALT=3;ODDS=0;PAIRED=1;PAIREDR=0.990196;PAO=0;PQA=0;PQR=0;PRO=0;QA=1058;QR=3993;RO=102;RPL=0;RPP=61.6401;RPPR=224.5;RPR=27;RUN=1;SAF=27;SAP=61.6401;SAR=0;SRF=102;SRP=224.5;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|0:106:60,14,32,0:60:2340:14,32,0:554,1300,0:-89.1664,-61.6354,-249.752,0,-146.739,-182.703,-107.228,-253.966,-192.336,-299.562 0|0:24:8,1,14,1:8:312:1,14,1:39,555,31:-43.3114,-42.5138,-67.859,0,-22.4715,-21.4639,-43.2365,-65.6752,-23.1978,-68.5799 0|0:66:34,12,13,4:34:1341:12,13,4:465,511,164:-31.7923,-3.83116,-110.551,0,-72.1357,-106.421,-28.4888,-100.626,-96.7964,-137.621 dDocent_Contig_4992 13 . G A 448.359 . AB=0.367347;ABP=10.4997;AC=3;AF=0.5;AN=6;AO=18;CIGAR=1X;DP=49;DPB=49;DPRA=0;EPP=42.0968;EPPR=70.3259;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=0.944444;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=711;QR=1241;RO=31;RPL=0;RPP=42.0968;RPPR=70.3259;RPR=18;RUN=1;SAF=18;SAP=42.0968;SAR=0;SRF=31;SRP=70.3259;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:23:13,10:13:525:10:390:-28.5278,0,-40.6718 0/1:14:10,4:10:394:4:163:-10.844,0,-31.5996 0/1:12:8,4:8:322:4:158:-10.987,0,-25.736 dDocent_Contig_4993 21 . A G 293.56 . AB=0.14966;ABP=159.726;AC=3;AF=0.5;AN=6;AO=22;CIGAR=1X;DP=147;DPB=147;DPRA=0;EPP=50.7827;EPPR=274.444;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=864;QR=4955;RO=125;RPL=0;RPP=50.7827;RPPR=274.444;RPR=22;RUN=1;SAF=22;SAP=50.7827;SAR=0;SRF=125;SRP=274.444;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:68:56,12:56:2210:12:461:-21.3543,0,-178.606 0/1:35:29,6:29:1138:6:240:-11.4394,0,-92.1701 0/1:44:40,4:40:1607:4:163:-1.81311,0,-131.618 dDocent_Contig_4994 97 . C A 48.0539 . AB=0.135593;ABP=71.062;AC=2;AF=0.333333;AN=6;AO=9;CIGAR=1X;DP=82;DPB=82;DPRA=0;EPP=22.5536;EPPR=161.528;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=313;QR=2519;RO=73;RPL=9;RPP=22.5536;RPPR=161.528;RPR=0;RUN=1;SAF=9;SAP=22.5536;SAR=0;SRF=73;SRP=161.528;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:37:33,4:33:1137:4:142:-1.99116,0,-91.4964 0/0:23:22,1:22:762:1:29:0,-4.02403,-66.0004 0/1:22:18,4:18:620:4:142:-6.50655,0,-49.5017 dDocent_Contig_4995 7 . T A 1519.47 . AB=0.556701;ABP=5.71904;AC=3;AF=0.5;AN=6;AO=54;CIGAR=2X;DP=97;DPB=97;DPRA=0;EPP=120.27;EPPR=94.2121;GTI=0;LEN=1;MEANALT=1.33333;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=2064;QR=1604;RO=42;RPL=0;RPP=120.27;RPPR=94.2121;RPR=54;RUN=1;SAF=54;SAP=120.27;SAR=0;SRF=42;SRP=94.2121;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|1:44:14,30:14:539:30:1145:-90.1043,0,-35.6104 0|1:30:14,15:14:539:15:577:-43.1534,0,-39.7365 0|1:23:14,9:14:526:9:342:-24.2125,0,-40.7515 dDocent_Contig_4996 19 . C T 3394.17 . AB=0.763636;ABP=69.4179;AC=4;AF=0.666667;AN=6;AO=104;CIGAR=1X;DP=130;DPB=130;DPRA=0;EPP=228.843;EPPR=59.4686;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=4170;QR=1042;RO=26;RPL=0;RPP=228.843;RPPR=59.4686;RPR=104;RUN=1;SAF=104;SAP=228.843;SAR=0;SRF=26;SRP=59.4686;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:66:11,55:11:437:55:2219:-179.998,0,-19.8132 1/1:20:0,20:0:0:20:785:-70.9698,-6.0206,0 0/1:44:15,29:15:605:29:1166:-91.9729,0,-41.5434 dDocent_Contig_4997 13 . A G 685.091 . AB=0.135081;ABP=576.717;AC=3;AF=0.5;AN=6;AO=67;CIGAR=1X;DP=496;DPB=496;DPRA=0;EPP=148.499;EPPR=917.2;GTI=0;LEN=1;MEANALT=2;MQM=47.1493;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=0.656716;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=2667;QR=16744;RO=421;RPL=0;RPP=148.499;RPPR=917.2;RPR=67;RUN=1;SAF=67;SAP=148.499;SAR=0;SRF=421;SRP=917.2;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:169:144,24:144:5728:24:946:-29.7008,0,-464.571 0/1:224:197,21:197:7828:21:830:-6.39569,0,-638.103 0/1:103:80,22:80:3188:22:891:-37.9355,0,-255.88 dDocent_Contig_4998 98 . N G 129.452 . AB=0;ABP=0;AC=2;AF=1;AN=2;AO=4;CIGAR=1X;DP=4;DPB=4;DPRA=0;EPP=11.6962;EPPR=0;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=0;NS=1;NUMALT=1;ODDS=7.37776;PAIRED=1;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=140;QR=0;RO=0;RPL=4;RPP=11.6962;RPPR=0;RPR=0;RUN=1;SAF=4;SAP=11.6962;SAR=0;SRF=0;SRP=0;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 1/1:4:0,4:0:0:4:140:-12.9449,-1.20412,0 ./.:.:.:.:.:.:.:. ./.:.:.:.:.:.:.:. dDocent_Contig_4999 24 . T A 957.613 . AB=0.241379;ABP=104.096;AC=3;AF=0.5;AN=6;AO=42;CIGAR=1X1M;DP=174;DPB=174;DPRA=0;EPP=77.6676;EPPR=274.444;GTI=0;LEN=1;MEANALT=1.33333;MQM=59.881;MQMR=60;NS=3;NUMALT=2;ODDS=1.38778e-17;PAIRED=0.809524;PAIREDR=0.992;PAO=0;PQA=0;PQR=0;PRO=0;QA=1677;QR=4925;RO=125;RPL=0;RPP=94.2121;RPPR=274.444;RPR=42;RUN=1;SAF=40;SAP=77.6676;SAR=2;SRF=125;SRP=274.444;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|1:91:64,7,20:64:2524:7,20:268,808:-47.3559,-44.6393,-250.172,0,-185.671,-201.637 0|1:38:27,0,11:27:1060:0,11:0,433:-27.8829,-36.0107,-123.175,0,-87.5567,-84.2454 0|1:45:34,0,11:34:1341:0,11:0,436:-26.0453,-36.2804,-146.6,0,-110.715,-107.404 dDocent_Contig_5000 14 . C G 68.9485 . AB=0.135593;ABP=71.062;AC=2;AF=0.333333;AN=6;AO=8;CIGAR=1X;DP=75;DPB=75;DPRA=1.84375;EPP=20.3821;EPPR=148.499;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=0;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=305;QR=2683;RO=67;RPL=0;RPP=20.3821;RPPR=148.499;RPR=8;RUN=1;SAF=8;SAP=20.3821;SAR=0;SRF=67;SRP=148.499;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:33:29,4:29:1171:4:164:-5.21591,0,-95.7324 0/0:16:16,0:16:641:0:0:0,-4.81648,-58.0226 0/1:26:22,4:22:871:4:141:-5.20164,0,-70.871 dDocent_Contig_5001 68 . T G 124.357 . AB=0.272727;ABP=12.8806;AC=1;AF=0.166667;AN=6;AO=6;CIGAR=1X;DP=64;DPB=64;DPRA=1.04762;EPP=16.0391;EPPR=128.956;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=228;QR=2288;RO=58;RPL=6;RPP=16.0391;RPPR=128.956;RPR=0;RUN=1;SAF=6;SAP=16.0391;SAR=0;SRF=58;SRP=128.956;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:36:36,0:36:1434:0:0:0,-10.8371,-129.316 0/1:22:16,6:16:627:6:228:-14.2596,0,-50.1394 0/0:6:6,0:6:227:0:0:0,-1.80618,-20.7927 dDocent_Contig_5003 130 . G C 183.108 . AB=0.285714;ABP=16.9698;AC=2;AF=0.333333;AN=6;AO=12;CIGAR=1X;DP=65;DPB=65;DPRA=0;EPP=29.068;EPPR=118.098;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=423;QR=1843;RO=53;RPL=0;RPP=29.068;RPPR=118.098;RPR=12;RUN=1;SAF=0;SAP=29.068;SAR=12;SRF=0;SRP=118.098;SRR=53;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:30:28,2:28:980:2:71:0,-2.28884,-81.7708 0/1:11:6,5:6:208:5:179:-13.1491,0,-15.7474 0/1:24:19,5:19:655:5:173:-8.68462,0,-52.0464 dDocent_Contig_5005 82 . G A 413.196 . AB=0.327869;ABP=18.709;AC=3;AF=0.5;AN=6;AO=20;CIGAR=1X;DP=61;DPB=61;DPRA=0;EPP=46.4397;EPPR=92.0407;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=3.46945e-18;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=713;QR=1409;RO=41;RPL=20;RPP=46.4397;RPPR=92.0407;RPR=0;RUN=1;SAF=20;SAP=46.4397;SAR=0;SRF=41;SRP=92.0407;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:27:21,6:21:711:6:221:-12.119,0,-56.1761 0/1:12:8,4:8:281:4:137:-9.05535,0,-22.0176 0/1:22:12,10:12:417:10:355:-25.6681,0,-31.2397 dDocent_Contig_5006 82 . G T 121.859 . AB=0.205128;ABP=32.4644;AC=1;AF=0.166667;AN=6;AO=8;CIGAR=1X;DP=70;DPB=70;DPRA=2.51613;EPP=20.3821;EPPR=137.642;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=279;QR=2133;RO=62;RPL=8;RPP=20.3821;RPPR=137.642;RPR=0;RUN=1;SAF=8;SAP=20.3821;SAR=0;SRF=62;SRP=137.642;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:39:31,8:31:1062:8:279:-13.7088,0,-84.1481 0/0:6:6,0:6:206:0:0:0,-1.80618,-18.8767 0/0:25:25,0:25:865:0:0:0,-7.52575,-78.1673 dDocent_Contig_5007 9 . T C 75.9307 . AB=0.25;ABP=11.6962;AC=1;AF=0.166667;AN=6;AO=9;CIGAR=1X;DP=142;DPB=142;DPRA=1.15116;EPP=22.5536;EPPR=291.816;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=346;QR=5074;RO=133;RPL=0;RPP=22.5536;RPPR=291.816;RPR=9;RUN=1;SAF=9;SAP=22.5536;SAR=0;SRF=133;SRP=291.816;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:83:78,5:78:2996:5:192:0,-7.33548,-252.152 0/1:16:12,4:12:435:4:154:-9.41698,0,-34.6682 0/0:43:43,0:43:1643:0:0:0,-12.9443,-148.135 dDocent_Contig_5008 40 . C A 511.987 . AB=0.242718;ABP=62.2304;AC=3;AF=0.5;AN=6;AO=25;CIGAR=1X;DP=103;DPB=103;DPRA=0;EPP=57.2971;EPPR=172.385;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=963;QR=3150;RO=78;RPL=0;RPP=57.2971;RPPR=172.385;RPR=25;RUN=1;SAF=25;SAP=57.2971;SAR=0;SRF=78;SRP=172.385;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:66:55,11:55:2213:11:430:-19.1843,0,-179.471 0/1:12:5,7:5:204:7:280:-21.9594,0,-15.1317 0/1:25:18,7:18:733:7:253:-15.5779,0,-58.7677 dDocent_Contig_5009 70 . A G 363.974 . AB=0.1875;ABP=111.584;AC=2;AF=0.333333;AN=6;AO=24;CIGAR=1X;DP=159;DPB=159;DPRA=2.06452;EPP=55.1256;EPPR=296.159;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=861;QR=5094;RO=135;RPL=24;RPP=55.1256;RPPR=296.159;RPR=0;RUN=1;SAF=24;SAP=55.1256;SAR=0;SRF=135;SRP=296.159;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:89:69,20:69:2597:20:715:-37.8445,0,-207.138 0/0:31:31,0:31:1170:0:0:0,-9.33193,-105.585 0/1:39:35,4:35:1327:4:146:-1.75754,0,-107.976 dDocent_Contig_5010 138 . T G 72.4036 . AB=0.2;ABP=18.6449;AC=1;AF=0.166667;AN=6;AO=4;CIGAR=1X;DP=33;DPB=33;DPRA=3.07692;EPP=11.6962;EPPR=65.983;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=1.73472e-18;PAIRED=0;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=160;QR=1075;RO=29;RPL=0;RPP=11.6962;RPPR=65.983;RPR=4;RUN=1;SAF=0;SAP=11.6962;SAR=4;SRF=0;SRP=65.983;SRR=29;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:20:16,4:16:608:4:160:-8.7632,0,-49.035 0/0:7:7,0:7:236:0:0:0,-2.10721,-21.561 0/0:6:6,0:6:231:0:0:0,-1.80618,-21.1579 dDocent_Contig_5011 7 . G A 3275.82 . AB=0.668675;ABP=44.0328;AC=3;AF=0.5;AN=6;AO=111;CIGAR=1X;DP=166;DPB=166;DPRA=0;EPP=244.044;EPPR=120.27;GTI=0;LEN=1;MEANALT=1.33333;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=4245;QR=1725;RO=54;RPL=0;RPP=244.044;RPPR=120.27;RPR=111;RUN=1;SAF=111;SAP=244.044;SAR=0;SRF=54;SRP=120.27;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:90:33,56:33:1054:56:2122:-164.301,0,-68.2232 0/1:17:6,11:6:186:11:423:-33.3063,0,-11.9258 0/1:59:15,44:15:485:44:1700:-135.497,0,-26.1908 dDocent_Contig_5012 13 . A T 261.206 . AB=0.075;ABP=65.7659;AC=0;AF=0;AN=6;AO=5;CIGAR=3M1X1M;DP=77;DPB=69.2;DPRA=0;EPP=13.8677;EPPR=131.127;GTI=0;LEN=1;MEANALT=2;MQM=60;MQMR=60;NS=3;NUMALT=2;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=203;QR=2311;RO=59;RPL=0;RPP=13.8677;RPPR=131.127;RPR=5;RUN=1;SAF=5;SAP=13.8677;SAR=0;SRF=59;SRP=131.127;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|0:37:34,1,2:34:1338:1,2:33,81:0,-7.59169,-117.345,-3.50613,-110.967,-113.031 0|0:18:13,3,2:13:508:3,2:109,81:-4.96251,0,-40.8459,-2.18017,-35.068,-43.3615 0|0:22:12,9,1:12:465:9,1:345,41:-24.6799,0,-35.4647,-24.9055,-34.7882,-62.8015 dDocent_Contig_5013 94 . G A 159.99 . AB=0.163793;ABP=116.9;AC=3;AF=0.5;AN=6;AO=19;CIGAR=1X;DP=116;DPB=116;DPRA=0;EPP=44.2683;EPPR=213.643;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=6.93889e-18;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=608;QR=3319;RO=97;RPL=19;RPP=44.2683;RPPR=213.643;RPR=0;RUN=1;SAF=19;SAP=44.2683;SAR=0;SRF=97;SRP=213.643;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:59:52,7:52:1765:7:208:-1.25221,0,-141.373 0/1:30:25,5:25:861:5:166:-6.23682,0,-68.7755 0/1:27:20,7:20:693:7:234:-13.2599,0,-54.5652 dDocent_Contig_5014 9 . T C 176.368 . AB=0.133858;ABP=150.893;AC=1;AF=0.166667;AN=6;AO=25;CIGAR=1X;DP=235;DPB=235;DPRA=0;EPP=57.2971;EPPR=459.02;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=916;QR=8048;RO=210;RPL=0;RPP=57.2971;RPPR=459.02;RPR=25;RUN=1;SAF=25;SAP=57.2971;SAR=0;SRF=210;SRP=459.02;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:127:110,17:110:4221:17:634:-19.1597,0,-341.734 0/0:53:49,4:49:1880:4:147:0,-2.36609,-155.856 0/0:55:51,4:51:1947:4:135:0,-4.07406,-162.984 dDocent_Contig_5015 7 . A T 968.395 . AB=0.245283;ABP=92.6143;AC=3;AF=0.5;AN=6;AO=39;CIGAR=1X3M;DP=159;DPB=159;DPRA=0;EPP=87.6977;EPPR=145.538;GTI=0;LEN=1;MEANALT=3.66667;MQM=56.6154;MQMR=60;NS=3;NUMALT=5;ODDS=0;PAIRED=0.897436;PAIREDR=0.863636;PAO=0;PQA=0;PQR=0;PRO=0;QA=1450;QR=3383;RO=88;RPL=0;RPP=87.6977;RPPR=194.1;RPR=39;RUN=1;SAF=39;SAP=87.6977;SAR=0;SRF=82;SRP=145.538;SRR=6;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|1:56:24,4,0,22,0,4:24:930:4,0,22,0,4:154,0,844,0,163:-62.0434,-56.6238,-131.824,-69.2681,-133.028,-145.673,0,-63.7559,-76.4,-69.7773,-69.2681,-133.028,-145.673,-76.4,-145.673,-55.8179,-119.579,-132.224,-62.9503,-132.224,-131.02 0|1:47:35,2,0,6,4,0:35:1333:2,0,6,4,0:78,0,228,155,0:-8.15807,-12.2812,-121.02,-18.6941,-121.622,-128.034,0,-102.924,-109.336,-107.53,-5.95832,-108.887,-115.299,-96.6011,-114.095,-18.6941,-121.622,-128.034,-109.336,-115.299,-128.034 0|1:56:29,2,13,11,0,0:29:1120:2,13,11,0,0:76,498,378,0,0:-32.1609,-34.6563,-126.055,0,-85.7827,-88.1028,-11.3041,-97.0605,-62.4229,-99.982,-40.8907,-126.657,-92.0162,-103.293,-132.89,-40.8907,-126.657,-92.0162,-103.293,-132.89,-132.89 dDocent_Contig_5017 8 . C A 4076.71 . AB=0.4625;ABP=6.91895;AC=3;AF=0.5;AN=6;AO=148;CIGAR=1X;DP=320;DPB=320;DPRA=0;EPP=324.388;EPPR=374.332;GTI=0;LEN=1;MEANALT=1.33333;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=5654;QR=6594;RO=171;RPL=0;RPP=324.388;RPPR=374.332;RPR=148;RUN=1;SAF=148;SAP=324.388;SAR=0;SRF=171;SRP=374.332;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:152:80,71:80:3099:71:2702:-197.536,0,-233.226 0/1:64:34,30:34:1300:30:1146:-84.1729,0,-98.024 0/1:104:57,47:57:2195:47:1806:-131.485,0,-166.462 dDocent_Contig_5018 128 . G A 332.83 . AB=0.228916;ABP=55.989;AC=2;AF=0.333333;AN=6;AO=22;CIGAR=1X;DP=158;DPB=158;DPRA=0;EPP=50.7827;EPPR=298.331;GTI=0;LEN=1;MEANALT=1;MQM=59.6364;MQMR=59.7059;NS=3;NUMALT=1;ODDS=6.93889e-18;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=785;QR=4783;RO=136;RPL=0;RPP=50.7827;RPPR=298.331;RPR=22;RUN=1;SAF=0;SAP=50.7827;SAR=22;SRF=0;SRP=298.331;SRR=136;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:75:72,3:72:2516:3:106:0,-12.6882,-216.8 0/1:46:38,8:38:1345:8:287:-12.3291,0,-107.503 0/1:37:26,11:26:922:11:392:-24.4768,0,-71.898 dDocent_Contig_5019 8 . T C 2848.12 . AB=0.705882;ABP=53.0819;AC=3;AF=0.5;AN=6;AO=96;CIGAR=2X;DP=136;DPB=136;DPRA=0;EPP=211.472;EPPR=89.8692;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=3671;QR=1527;RO=40;RPL=0;RPP=211.472;RPPR=89.8692;RPR=96;RUN=1;SAF=96;SAP=211.472;SAR=0;SRF=40;SRP=89.8692;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|1:49:24,25:24:909:25:958:-71.7832,0,-67.3737 0|1:30:6,24:6:233:24:924:-74.4469,0,-12.3092 0|1:57:10,47:10:385:47:1789:-144.104,0,-17.8475 dDocent_Contig_5020 15 . T G 220.456 . AB=0.111111;ABP=26.6552;AC=0;AF=0;AN=6;AO=2;CIGAR=1X2M1I2M1X;DP=109;DPB=109.333;DPRA=0.395604;EPP=7.35324;EPPR=215.815;GTI=0;LEN=1;MEANALT=2;MQM=60;MQMR=60;NS=3;NUMALT=2;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=78;QR=3839;RO=98;RPL=0;RPP=7.35324;RPPR=215.815;RPR=2;RUN=1;SAF=2;SAP=7.35324;SAR=0;SRF=98;SRP=215.815;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|0:60:59,0,1:59:2303:0,1:0,11:0,-17.7608,-207.35,-16.9618,-206.666,-206.365 0|0:18:8,2,8:8:316:2,8:78,319:-23.8695,-19.8679,-45.2666,0,-19.5959,-23.5983 0|0:31:31,0,0:31:1220:0,0:0,0:0,-9.33193,-110.081,-9.33193,-110.081,-110.081 dDocent_Contig_5022 9 . T C 12208.9 . AB=0;ABP=0;AC=6;AF=1;AN=6;AO=376;CIGAR=1X;DP=395;DPB=395;DPRA=0;EPP=819.484;EPPR=44.2683;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=14309;QR=738;RO=19;RPL=0;RPP=819.484;RPPR=44.2683;RPR=376;RUN=1;SAF=376;SAP=819.484;SAR=0;SRF=19;SRP=44.2683;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 1/1:167:5,162:5:193:162:6218:-541.81,-32.5307,0 1/1:127:7,120:7:272:120:4532:-383.099,-13.3836,0 1/1:101:7,94:7:273:94:3559:-295.499,-5.46602,0 dDocent_Contig_5023 55 . C G 32.4377 . AB=0.0967742;ABP=134.349;AC=1;AF=0.166667;AN=6;AO=9;CIGAR=1X;DP=142;DPB=142;DPRA=3.79592;EPP=22.5536;EPPR=291.816;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=6.93889e-18;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=360;QR=5232;RO=133;RPL=9;RPP=22.5536;RPPR=291.816;RPR=0;RUN=1;SAF=9;SAP=22.5536;SAR=0;SRF=133;SRP=291.816;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:93:84,9:84:3328:9:360:-4.7664,0,-271.581 0/0:20:20,0:20:767:0:0:0,-6.0206,-69.3412 0/0:29:29,0:29:1137:0:0:0,-8.72987,-102.606 dDocent_Contig_5024 17 . G A 3687.74 . 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AB=0.214286;ABP=12.937;AC=1;AF=0.166667;AN=6;AO=3;CIGAR=1X;DP=73;DPB=73;DPRA=0.474576;EPP=9.52472;EPPR=155.013;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=111;QR=2764;RO=70;RPL=0;RPP=9.52472;RPPR=155.013;RPR=3;RUN=1;SAF=3;SAP=9.52472;SAR=0;SRF=70;SRP=155.013;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:46:46,0:46:1815:0:0:0,-13.8474,-163.564 0/1:14:11,3:11:445:3:111:-6.13607,0,-36.1911 0/0:13:13,0:13:504:0:0:0,-3.91339,-45.7019 dDocent_Contig_5046 11 . G A 1921.04 . AB=0.603774;ABP=12.9253;AC=3;AF=0.5;AN=6;AO=64;CIGAR=1X;DP=106;DPB=106;DPRA=0;EPP=141.985;EPPR=94.2121;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=2540;QR=1660;RO=42;RPL=0;RPP=141.985;RPPR=94.2121;RPR=64;RUN=1;SAF=64;SAP=141.985;SAR=0;SRF=42;SRP=94.2121;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:72:23,49:23:904:49:1934:-152.581,0,-59.9907 0/1:15:10,5:10:406:5:202:-14.0464,0,-32.3852 0/1:19:9,10:9:350:10:404:-30.9994,0,-26.135 dDocent_Contig_5047 11 . T A 2651.91 . AB=0.770642;ABP=72.358;AC=3;AF=0.5;AN=6;AO=84;CIGAR=1X;DP=109;DPB=109;DPRA=0;EPP=185.414;EPPR=57.2971;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=3363;QR=998;RO=25;RPL=0;RPP=185.414;RPPR=57.2971;RPR=84;RUN=1;SAF=84;SAP=185.414;SAR=0;SRF=25;SRP=57.2971;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:83:14,69:14:550:69:2755:-223.077,0,-24.8506 0/1:11:3,8:3:121:8:326:-26.3985,0,-7.96887 0/1:15:8,7:8:327:7:282:-21.2377,0,-25.2847 dDocent_Contig_5048 107 . N G 4693 . AB=0;ABP=0;AC=6;AF=1;AN=6;AO=161;CIGAR=1X;DP=161;DPB=161;DPRA=0;EPP=352.617;EPPR=0;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=0;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=5200;QR=0;RO=0;RPL=0;RPP=352.617;RPPR=0;RPR=161;RUN=1;SAF=0;SAP=352.617;SAR=161;SRF=0;SRP=0;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 1/1:108:0,108:0:0:108:3505:-315.677,-32.5112,0 1/1:19:0,19:0:0:19:594:-53.7598,-5.71957,0 1/1:34:0,34:0:0:34:1101:-99.3858,-10.235,0 dDocent_Contig_5049 15 . A T 909.517 . AB=0.0261438;ABP=301.41;AC=0;AF=0;AN=6;AO=4;CIGAR=1M2D1X1M1X4M2X2M;DP=153;DPB=146.5;DPRA=0;EPP=11.6962;EPPR=146.327;GTI=0;LEN=1;MEANALT=4.33333;MQM=57;MQMR=60;NS=3;NUMALT=4;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=158;QR=2608;RO=66;RPL=0;RPP=11.6962;RPPR=146.327;RPR=4;RUN=1;SAF=4;SAP=11.6962;SAR=0;SRF=66;SRP=146.327;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|0:59:26,1,10,4,17:26:1028:1,10,4,17:40,180,96,549:-34.3471,-38.8781,-123.242,-31.7072,-113.066,-113.348,-35.8246,-117.196,-110.015,-119.284,0,-81.4305,-74.2648,-78.3799,-79.6062 0|0:31:5,2,8,0,16:5:200:2,8,0,16:80,144,0,510:-36.2333,-31.1442,-47.0437,-29.3774,-39.2834,-43.4645,-37.7385,-47.6458,-45.8728,-54.2364,0,-9.93882,-8.2654,-16.5417,-11.7252 0|0:63:35,1,6,4,15:35:1380:1,6,4,15:38,108,96,480:-25.8941,-33.3118,-146.626,-30.1545,-140.64,-141.948,-30.084,-140.581,-137.41,-142.491,0,-110.552,-107.388,-107.324,-109.151 dDocent_Contig_5050 9 . T C 4568.3 . AB=0.025;ABP=551.741;AC=3;AF=0.5;AN=6;AO=7;CIGAR=1X8M2X6M;DP=280;DPB=279.824;DPRA=0;EPP=18.2106;EPPR=39.9253;GTI=0;LEN=1;MEANALT=9.66667;MQM=60;MQMR=60;NS=3;NUMALT=6;ODDS=5.55112e-17;PAIRED=0;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=259;QR=671;RO=17;RPL=0;RPP=18.2106;RPPR=39.9253;RPR=7;RUN=1;SAF=7;SAP=18.2106;SAR=0;SRF=17;SRP=39.9253;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 1|0:150:5,9,32,15,2,12,55:5:196:9,32,15,2,12,55:177,1265,578,70,442,2197:-249.939,-240.412,-253.821,-164.856,-169.946,-171.341,-203.979,-209.067,-133.51,-215.583,-245.75,-250.836,-175.28,-214.404,-261.267,-215.32,-220.408,-144.852,-183.974,-225.745,-227.827,-70.4713,-75.5649,0,-39.1218,-80.8973,-50.4648,-70.0351 1|0:78:5,0,19,13,4,4,25:5:199:0,19,13,4,4,25:0,742,486,150,157,1003:-112.347,-113.852,-130.24,-66.2618,-82.6491,-76.9295,-74.0551,-90.4438,-42.8571,-86.5304,-101.565,-117.954,-70.3636,-78.1571,-116.75,-100.939,-117.327,-69.7364,-77.53,-105.04,-116.123,-31.1957,-47.5866,0,-7.78434,-35.2985,-34.6712,-40.0608 1|0:52:7,0,2,10,1,1,28:7:276:0,2,10,1,1,28:0,76,382,39,40,1134:-100.067,-102.174,-124.884,-99.9121,-122.62,-122.018,-70.8326,-93.5426,-91.2812,-90.5323,-98.9683,-121.678,-119.415,-90.3366,-121.377,-98.8789,-121.589,-119.325,-90.2471,-118.383,-121.288,-8.63489,-31.3564,-29.1021,0,-28.1493,-28.0596,-22.9275 dDocent_Contig_5051 13 . C T 32.9371 . AB=0.105263;ABP=80.1547;AC=1;AF=0.166667;AN=6;AO=6;CIGAR=1X;DP=162;DPB=162;DPRA=1.08571;EPP=16.0391;EPPR=291.649;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=54.3526;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=0.871795;PAO=0;PQA=0;PQR=0;PRO=0;QA=240;QR=6247;RO=156;RPL=0;RPP=16.0391;RPPR=341.76;RPR=6;RUN=1;SAF=6;SAP=16.0391;SAR=0;SRF=150;SRP=291.649;SRR=6;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:57:51,6:51:2037:6:240:-4.81636,0,-165.926 0/0:68:68,0:68:2734:0:0:0,-20.47,-225.555 0/0:37:37,0:37:1476:0:0:0,-11.1381,-108.662 dDocent_Contig_5052 134 . A G 731.715 . AB=0.258824;ABP=88.8984;AC=3;AF=0.5;AN=6;AO=44;CIGAR=1X;DP=170;DPB=170;DPRA=0;EPP=98.5551;EPPR=274.444;GTI=0;LEN=1;MEANALT=1.33333;MQM=60;MQMR=58.88;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=1433;QR=4294;RO=125;RPL=0;RPP=98.5551;RPPR=274.444;RPR=44;RUN=1;SAF=0;SAP=98.5551;SAR=44;SRF=0;SRP=274.444;SRR=125;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:77:64,13:64:2209:13:431:-15.929,0,-175.902 0/1:34:24,9:24:825:9:315:-18.4049,0,-60.7599 0/1:59:37,22:37:1260:22:687:-44.3605,0,-95.9393 dDocent_Contig_5053 18 . T C 8107.05 . AB=0.13619;ABP=1505.6;AC=0;AF=0;AN=6;AO=178;CIGAR=4M1X5M;DP=1307;DPB=1295.4;DPRA=0;EPP=270.223;EPPR=920.173;GTI=0;LEN=1;MEANALT=21;MQM=59.6629;MQMR=59.5984;NS=3;NUMALT=3;ODDS=0;PAIRED=0.691011;PAIREDR=0.747951;PAO=0;PQA=0;PQR=0;PRO=0;QA=7097;QR=18843;RO=488;RPL=0;RPP=389.532;RPPR=1062.69;RPR=178;RUN=1;SAF=163;SAP=270.223;SAR=15;SRF=471;SRP=920.173;SRR=17;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|0:563:217,73,124,96:217:8391:73,124,96:2493,4637,3859:-313.791,-187.099,-853.883,0,-496.749,-651.438,-61.6184,-558.37,-371.275,-721.49 0|0:401:133,68,118,49:133:5091:68,118,49:2386,4388,1905:-318.259,-174.197,-571.497,0,-233.681,-382.257,-201.776,-435.45,-261.26,-604.801 0|0:343:138,64,76,33:138:5361:64,76,33:2460,2775,1333:-184.177,-33.2193,-453.011,0,-246.558,-416.178,-115.821,-362.382,-329.161,-544.948 dDocent_Contig_5054 13 . C A 75.9649 . AB=0.109244;ABP=160.834;AC=2;AF=0.333333;AN=6;AO=13;CIGAR=1X;DP=136;DPB=136;DPRA=3.5;EPP=31.2394;EPPR=270.101;GTI=0;LEN=1;MEANALT=1;MQM=52.6154;MQMR=40.6829;NS=3;NUMALT=1;ODDS=0;PAIRED=0;PAIREDR=0.317073;PAO=0;PQA=0;PQR=0;PRO=0;QA=521;QR=4955;RO=123;RPL=0;RPP=31.2394;RPPR=270.101;RPR=13;RUN=1;SAF=13;SAP=31.2394;SAR=0;SRF=123;SRP=270.101;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:84:76,8:76:3052:8:322:-3.89762,0,-220.298 0/0:17:17,0:17:688:0:0:0,-5.11751,-51.7746 0/1:35:30,5:30:1215:5:199:-7.21993,0,-85.4043 dDocent_Contig_5055 50 . T C 677.307 . AB=0.191176;ABP=172.002;AC=3;AF=0.5;AN=6;AO=39;CIGAR=1X1M;DP=204;DPB=204;DPRA=0;EPP=79.2345;EPPR=346.103;GTI=0;LEN=1;MEANALT=2;MQM=59.8462;MQMR=60;NS=3;NUMALT=2;ODDS=0;PAIRED=0.641026;PAIREDR=0.955696;PAO=0;PQA=0;PQR=0;PRO=0;QA=1469;QR=6026;RO=158;RPL=33;RPP=43.6001;RPPR=328.951;RPR=6;RUN=1;SAF=32;SAP=37.8095;SAR=7;SRF=156;SRP=328.951;SRR=2;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|1:81:70,0,10:70:2652:0,10:0,382:-10.5631,-31.6352,-249.06,0,-217.716,-214.706 0|1:59:43,0,15:43:1626:0,15:0,538:-31.0798,-44.0241,-177.316,0,-133.454,-128.938 0|1:64:45,5,14:45:1748:5,14:190,549:-31.6106,-29.5791,-171.704,0,-128.06,-139.425 dDocent_Contig_5056 22 . G A 30.8758 . AB=0.0625;ABP=56.2114;AC=0;AF=0;AN=6;AO=2;CIGAR=1M2I3M1X3M1X3M1I7M;DP=110;DPB=111.368;DPRA=0;EPP=7.35324;EPPR=176.728;GTI=0;LEN=1;MEANALT=4;MQM=19;MQMR=60;NS=3;NUMALT=4;ODDS=0;PAIRED=0;PAIREDR=0.8875;PAO=0;PQA=0;PQR=0;PRO=0;QA=38;QR=3133;RO=80;RPL=0;RPP=7.35324;RPPR=176.728;RPR=2;RUN=1;SAF=2;SAP=7.35324;SAR=0;SRF=80;SRP=176.728;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|0:53:41,0,6,0,4:41:1608:0,6,0,4:0,192,0,163:-1.45859,-13.8008,-146.081,0,-132.243,-130.437,-13.8008,-146.081,-132.243,-146.081,-0.319052,-132.631,-118.794,-132.631,-131.427 0|0:25:15,0,4,3,0:15:590:0,4,3,0:0,128,65,0:-4.7495,-9.26495,-57.8875,0,-48.663,-47.4588,-5.14624,-53.7653,-44.5464,-52.8622,-9.26495,-57.8875,-48.663,-53.7653,-57.8875 0|0:32:24,2,4,0,1:24:935:2,4,0,1:38,127,0,41:-1.96721,-6.95143,-83.2497,0,-74.6801,-75.7406,-9.19193,-83.8518,-76.9448,-86.1193,-5.7896,-80.4665,-73.5593,-82.7337,-82.4327 dDocent_Contig_5057 11 . G A 26432.3 . AB=0.452956;ABP=26.0973;AC=6;AF=1;AN=6;AO=544;CIGAR=1X7M;DP=1201;DPB=1154.88;DPRA=0;EPP=603.933;EPPR=48.6112;GTI=0;LEN=1;MEANALT=11.6667;MQM=51.6893;MQMR=60;NS=3;NUMALT=4;ODDS=0;PAIRED=0.191176;PAIREDR=0.952381;PAO=0;PQA=0;PQR=0;PRO=0;QA=20296;QR=836;RO=21;RPL=0;RPP=1184.29;RPPR=48.6112;RPR=544;RUN=1;SAF=466;SAP=603.933;SAR=78;SRF=21;SRP=48.6112;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 1|1:537:6,77,178,7,235:6:242:77,178,7,235:3040,6974,282,9102:-1280.7,-1073.17,-1069.94,-719.977,-530.594,-686.342,-1259.26,-1069.88,-716.681,-1277.1,-542.602,-353.221,0,-539.306,-491.808 1|1:333:11,57,78,17,152:11:436:57,78,17,152:2218,3075,605,5285:-622.776,-474.637,-493.367,-375.197,-259.634,-387.607,-578.423,-462.862,-363.422,-609.194,-215.013,-99.4612,0,-203.24,-205.147 1|1:331:4,50,91,9,157:4:158:50,91,9,157:1986,3577,318,5909:-745.271,-613.085,-611.036,-459.604,-339.218,-445.212,-721.129,-600.741,-447.26,-731.421,-273.88,-153.501,0,-261.536,-239.621 dDocent_Contig_5058 10 . C A 2132.27 . AB=0.0555556;ABP=64.7766;AC=0;AF=0;AN=6;AO=2;CIGAR=1X2M1X;DP=95;DPB=95;DPRA=0;EPP=7.35324;EPPR=44.2683;GTI=0;LEN=1;MEANALT=3;MQM=60;MQMR=60;NS=3;NUMALT=3;ODDS=6.93889e-18;PAIRED=1;PAIREDR=0.736842;PAO=0;PQA=0;PQR=0;PRO=0;QA=80;QR=751;RO=19;RPL=0;RPP=7.35324;RPPR=44.2683;RPR=2;RUN=1;SAF=2;SAP=7.35324;SAR=0;SRF=19;SRP=44.2683;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|0:36:7,2,3,24:7:279:2,3,24:80,122,969:-76.0635,-71.5803,-93.9549,-68.3399,-84.7262,-90.4135,0,-16.3856,-13.1456,-15.7513 0|0:20:5,0,0,14:5:199:0,0,14:0,0,557:-39.2316,-40.7367,-57.132,-40.7367,-57.132,-57.132,0,-16.3841,-16.3841,-12.1697 0|0:39:7,0,0,32:7:273:0,0,32:0,0,1277:-103.454,-105.562,-128,-105.562,-128,-128,0,-22.8298,-22.8298,-13.1968 dDocent_Contig_5059 1 . N G 59.7882 . AB=0;ABP=0;AC=2;AF=1;AN=2;AO=2;CIGAR=1X;DP=2;DPB=2;DPRA=0;EPP=7.35324;EPPR=0;GTI=0;LEN=1;MEANALT=1;MQM=35;MQMR=0;NS=1;NUMALT=1;ODDS=5.99146;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=68;QR=0;RO=0;RPL=0;RPP=7.35324;RPPR=0;RPR=2;RUN=1;SAF=0;SAP=7.35324;SAR=2;SRF=0;SRP=0;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 1/1:2:0,2:0:0:2:68:-5.97773,-0.60206,0 ./.:.:.:.:.:.:.:. ./.:.:.:.:.:.:.:. dDocent_Contig_5060 24 . G C 240.591 . AB=0.12963;ABP=196.03;AC=1;AF=0.166667;AN=6;AO=35;CIGAR=1X;DP=600;DPB=600;DPRA=0;EPP=79.0118;EPPR=1229.89;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=0.987611;PAO=0;PQA=0;PQR=0;PRO=0;QA=1379;QR=22419;RO=565;RPL=0;RPP=79.0118;RPPR=1229.89;RPR=35;RUN=1;SAF=35;SAP=79.0118;SAR=0;SRF=565;SRP=1229.89;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:301:296,5:296:11767:5:204:0,-71.866,-1039.46 0/0:137:128,9:128:5050:9:349:0,-9.47999,-422.624 0/1:162:141,21:141:5602:21:826:-25.883,0,-455.223 dDocent_Contig_5061 9 . G T 2333.16 . AB=0.568807;ABP=7.4927;AC=4;AF=0.666667;AN=6;AO=77;CIGAR=1X2M2X;DP=124;DPB=124;DPRA=0;EPP=170.214;EPPR=105.07;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=2986;QR=1824;RO=47;RPL=0;RPP=170.214;RPPR=105.07;RPR=77;RUN=1;SAF=77;SAP=170.214;SAR=0;SRF=47;SRP=105.07;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|1:82:37,45:37:1432:45:1753:-133.326,0,-104.465 1|1:15:0,15:0:0:15:574:-51.9973,-4.51545,0 0|1:27:10,17:10:392:17:659:-51.5158,0,-27.5094 dDocent_Contig_5063 46 . G T 144.366 . AB=0.099359;ABP=438.001;AC=1;AF=0.166667;AN=6;AO=157;CIGAR=1X;DP=2069;DPB=2069;DPRA=0;EPP=326.781;EPPR=4100.58;GTI=0;LEN=1;MEANALT=2.33333;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=0.961783;PAIREDR=0.992051;PAO=0;PQA=0;PQR=0;PRO=0;QA=6145;QR=74779;RO=1887;RPL=2;RPP=326.781;RPPR=4100.58;RPR=155;RUN=1;SAF=157;SAP=343.931;SAR=0;SRF=1887;SRP=4100.58;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:916:846,62:846:33540:62:2405:0,-57.1273,-2798.97 0/1:312:277,31:277:11028:31:1212:-16.2605,0,-898.688 0/0:841:764,64:764:30211:64:2528:0,-21.957,-2488.63 dDocent_Contig_5064 31 . C A 5652.02 . AB=0.801136;ABP=141.639;AC=4;AF=0.666667;AN=6;AO=178;CIGAR=1X;DP=216;DPB=216;DPRA=0;EPP=389.532;EPPR=85.5263;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=1.38778e-17;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=7030;QR=1546;RO=38;RPL=0;RPP=389.532;RPPR=85.5263;RPR=178;RUN=1;SAF=178;SAP=389.532;SAR=0;SRF=38;SRP=85.5263;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:130:24,106:24:975:106:4181:-337.127,0,-48.9124 0/1:46:11,35:11:448:35:1373:-109.973,0,-26.8286 1/1:40:3,37:3:123:37:1476:-121.625,-0.576412,0 dDocent_Contig_5066 32 . T A 491.159 . AB=0.057554;ABP=239.357;AC=0;AF=0;AN=6;AO=8;CIGAR=2M1X4M;DP=226;DPB=221.143;DPRA=4.34375;EPP=20.3821;EPPR=398.218;GTI=0;LEN=1;MEANALT=2;MQM=60;MQMR=60;NS=3;NUMALT=2;ODDS=1.38778e-17;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=310;QR=7055;RO=182;RPL=0;RPP=20.3821;RPPR=398.218;RPR=8;RUN=1;SAF=8;SAP=20.3821;SAR=0;SRF=182;SRP=398.218;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|0:139:104,27,8:104:4035:27,8:968,310:-47.6131,0,-323.379,-53.4472,-306.041,-382.569 0|0:55:47,7,0:47:1808:7,0:237,0:-5.02556,0,-146.326,-19.174,-148.434,-167.638 0|0:32:31,0,0:31:1212:0,0:0,0:0,-9.33193,-108.968,-9.33193,-108.968,-108.968 dDocent_Contig_5067 38 . T C 111.477 . AB=0.206897;ABP=24.6501;AC=1;AF=0.166667;AN=6;AO=6;CIGAR=1X;DP=124;DPB=124;DPRA=0.610526;EPP=16.0391;EPPR=259.244;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=237;QR=4674;RO=118;RPL=0;RPP=16.0391;RPPR=259.244;RPR=6;RUN=1;SAF=6;SAP=16.0391;SAR=0;SRF=118;SRP=259.244;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:70:70,0:70:2777:0:0:0,-21.0721,-250.043 0/0:25:25,0:25:991:0:0:0,-7.52575,-89.4903 0/1:29:23,6:23:906:6:237:-12.9716,0,-73.1171 dDocent_Contig_5068 13 . C A 3326.64 . AB=0.127168;ABP=211.886;AC=0;AF=0;AN=6;AO=22;CIGAR=2X1M;DP=173;DPB=173;DPRA=0;EPP=50.7827;EPPR=55.1256;GTI=0;LEN=1;MEANALT=3;MQM=60;MQMR=60;NS=3;NUMALT=3;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=874;QR=944;RO=24;RPL=0;RPP=50.7827;RPPR=55.1256;RPR=22;RUN=1;SAF=22;SAP=50.7827;SAR=0;SRF=24;SRP=55.1256;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|0:98:11,55,12,20:11:432:55,12,20:2189,468,815:-208.633,-31.714,-50.6869,-173.479,-28.7804,-205.398,-144.706,0,-141.772,-174.216 0|0:42:10,18,6,8:10:394:18,6,8:687,243,297:-53.3334,0,-26.9976,-36.3013,-12.3734,-66.9121,-32.0527,-8.13008,-44.4265,-62.0591 0|0:33:3,9,4,17:3:118:9,4,17:362,163,691:-76.2203,-47.2933,-54.2891,-63.6757,-43.5505,-72.1771,-20.1271,0,-16.3826,-24.7143 dDocent_Contig_5069 37 . A G 83.5097 . AB=0.4;ABP=3.87889;AC=1;AF=0.166667;AN=6;AO=5;CIGAR=1X;DP=36;DPB=36;DPRA=1.5;EPP=13.8677;EPPR=68.1545;GTI=0;LEN=1;MEANALT=1;MQM=43;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=190;QR=1187;RO=30;RPL=0;RPP=13.8677;RPPR=68.1545;RPR=5;RUN=1;SAF=5;SAP=13.8677;SAR=0;SRF=30;SRP=68.1545;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:17:16,1:16:637:1:41:0,-1.22994,-53.7754 0/1:10:6,4:6:231:4:149:-10.1748,0,-18.145 0/0:9:8,0:8:319:0:0:0,-2.40824,-28.6891 dDocent_Contig_5070 109 . C T 1363.84 . AB=0.459259;ABP=4.95658;AC=3;AF=0.5;AN=6;AO=62;CIGAR=1X;DP=135;DPB=135;DPRA=0;EPP=137.642;EPPR=161.528;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=2018;QR=2333;RO=73;RPL=0;RPP=137.642;RPPR=161.528;RPR=62;RUN=1;SAF=0;SAP=137.642;SAR=62;SRF=0;SRP=161.528;SRR=73;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:81:40,41:40:1279:41:1325:-95.1523,0,-91.0088 0/1:12:6,6:6:183:6:198:-14.5319,0,-13.1585 0/1:42:27,15:27:871:15:495:-32.2226,0,-66.0461 dDocent_Contig_5071 25 . A C 5751.48 . AB=0.875;ABP=61.6401;AC=5;AF=0.833333;AN=6;AO=170;CIGAR=1X;DP=183;DPB=183;DPRA=0;EPP=372.161;EPPR=31.2394;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=6850;QR=525;RO=13;RPL=0;RPP=372.161;RPPR=31.2394;RPR=170;RUN=1;SAF=170;SAP=372.161;SAR=0;SRF=13;SRP=31.2394;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 1/1:120:7,113:7:283:113:4557:-384.194,-10.28,0 1/1:15:0,15:0:0:15:605:-54.7882,-4.51545,0 0/1:48:6,42:6:242:42:1688:-137.689,0,-7.70751 dDocent_Contig_5072 19 . C A 5284.64 . 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AB=0.268199;ABP=124.821;AC=2;AF=0.333333;AN=6;AO=70;CIGAR=7M2X6M1X;DP=261;DPB=265.438;DPRA=0;EPP=155.013;EPPR=302.673;GTI=0;LEN=1;MEANALT=4.66667;MQM=60;MQMR=60;NS=3;NUMALT=2;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=2708;QR=5379;RO=138;RPL=70;RPP=155.013;RPPR=302.673;RPR=0;RUN=1;SAF=70;SAP=155.013;SAR=0;SRF=138;SRP=302.673;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|1:148:78,42,19:78:3021:42,19:1646,747:-111.882,0,-235.531,-73.9188,-186.733,-316.362 0|1:58:31,19,5:31:1220:19,5:716,200:-49.322,0,-94.6472,-42.1738,-83.8902,-141.04 0|0:55:29,9,16:29:1138:9,16:346,637:-43.7292,-24.0578,-114.937,0,-65.1945,-88.7818 dDocent_Contig_5076 61 . T A 295.911 . AB=0.0487805;ABP=148.022;AC=0;AF=0;AN=6;AO=4;CIGAR=1M1I11M1X6M;DP=82;DPB=84;DPRA=0;EPP=11.6962;EPPR=115.927;GTI=0;LEN=1;MEANALT=3.66667;MQM=60;MQMR=60;NS=3;NUMALT=3;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=28;QR=1865;RO=52;RPL=4;RPP=11.6962;RPPR=115.927;RPR=0;RUN=1;SAF=4;SAP=11.6962;SAR=0;SRF=52;SRP=115.927;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|0:56:37,1,5,11:37:1334:1,5,11:7,199,398:-21.3653,-32.1894,-140.752,-16.0968,-124.663,-123.481,0,-108.579,-92.5097,-105.59 0|0:10:6,1,3,0:6:199:1,3,0:7,116,0:-7.95864,-9.51493,-25.2745,0,-16.0297,-15.4182,-9.76482,-25.5755,-16.3213,-25.8765 0|0:16:9,2,3,1:9:332:2,3,1:14,104,41:-5.79007,-7.92646,-34.4786,0,-26.6351,-26.3432,-5.09413,-31.6934,-23.8553,-32.0109 dDocent_Contig_5077 31 . C T 2569.84 . AB=0.38;ABP=34.2795;AC=3;AF=0.5;AN=6;AO=95;CIGAR=1X1M1X;DP=250;DPB=250;DPRA=0;EPP=209.3;EPPR=311.359;GTI=0;LEN=1;MEANALT=1.66667;MQM=51.7158;MQMR=60;NS=3;NUMALT=2;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=3754;QR=5559;RO=142;RPL=0;RPP=209.3;RPPR=311.359;RPR=95;RUN=1;SAF=95;SAP=209.3;SAR=0;SRF=142;SRP=311.359;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|1:131:85,33,10:85:3343:33,10:1297,393:-78.5994,0,-265.054,-71.8599,-242.664,-343.832 0|1:43:15,28,0:15:587:28,0:1105,0:-85.8029,0,-40.2246,-90.3184,-48.6534,-138.581 0|1:76:42,34,0:42:1629:34,0:1352,0:-98.1043,0,-123.974,-110.748,-134.209,-244.565 dDocent_Contig_5078 53 . C T 62.6118 . AB=0.133333;ABP=55.5599;AC=2;AF=0.333333;AN=6;AO=6;CIGAR=1X;DP=51;DPB=51;DPRA=3.75;EPP=16.0391;EPPR=100.727;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=245;QR=1818;RO=45;RPL=6;RPP=16.0391;RPPR=100.727;RPR=0;RUN=1;SAF=6;SAP=16.0391;SAR=0;SRF=45;SRP=100.727;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:34:31,3:31:1257:3:123:-1.22977,0,-103.159 0/0:6:6,0:6:237:0:0:0,-1.80618,-21.702 0/1:11:8,3:8:324:3:122:-8.06116,0,-26.2179 dDocent_Contig_5079 32 . G A 111.371 . AB=0.277778;ABP=10.7311;AC=1;AF=0.166667;AN=6;AO=8;CIGAR=1X;DP=152;DPB=152;DPRA=1.875;EPP=20.3821;EPPR=315.702;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=322;QR=5687;RO=144;RPL=0;RPP=20.3821;RPPR=315.702;RPR=8;RUN=1;SAF=8;SAP=20.3821;SAR=0;SRF=144;SRP=315.702;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:102:99,3:99:3875:3:122:0,-19.3326,-337.378 0/1:18:13,5:13:515:5:200:-12.961,0,-41.2764 0/0:32:32,0:32:1297:0:0:0,-9.63296,-116.991 dDocent_Contig_5080 93 . T A 2990.66 . AB=0.783333;ABP=86.6844;AC=4;AF=0.666667;AN=6;AO=114;CIGAR=1X;DP=141;DPB=141;DPRA=0;EPP=250.558;EPPR=61.6401;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=6.93889e-18;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=3787;QR=907;RO=27;RPL=114;RPP=250.558;RPPR=61.6401;RPR=0;RUN=1;SAF=114;SAP=250.558;SAR=0;SRF=27;SRP=61.6401;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:88:21,67:21:702:67:2230:-174.476,0,-37.0025 1/1:21:1,20:1:30:20:682:-58.6998,-3.32206,0 0/1:32:5,27:5:175:27:875:-69.4135,0,-6.46073 dDocent_Contig_5081 14 . C A 280.746 . AB=0.240741;ABP=34.5369;AC=1;AF=0.166667;AN=6;AO=15;CIGAR=1X1M1X;DP=125;DPB=125;DPRA=1.45312;EPP=35.5824;EPPR=239.701;GTI=0;LEN=1;MEANALT=1.5;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=576;QR=4309;RO=109;RPL=0;RPP=35.5824;RPPR=239.701;RPR=15;RUN=1;SAF=15;SAP=35.5824;SAR=0;SRF=109;SRP=239.701;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|0:39:36,2:36:1433:2:67:0,-5.43656,-122.854 0|1:54:41,13:41:1607:13:509:-29.8985,0,-128.613 0|0:32:32,0:32:1269:0:0:0,-9.63296,-114.485 dDocent_Contig_5082 21 . C G 383.922 . AB=0.303571;ABP=21.778;AC=3;AF=0.5;AN=6;AO=17;CIGAR=1X;DP=56;DPB=56;DPRA=0;EPP=39.9253;EPPR=87.6977;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=663;QR=1479;RO=39;RPL=0;RPP=39.9253;RPPR=87.6977;RPR=17;RUN=1;SAF=17;SAP=39.9253;SAR=0;SRF=39;SRP=87.6977;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:19:11,8:11:424:8:321:-23.5378,0,-32.7912 0/1:16:11,5:11:416:5:180:-11.7319,0,-32.9731 0/1:21:17,4:17:639:4:162:-8.64533,0,-51.5185 dDocent_Contig_5083 14 . G A 225.866 . AB=0.185714;ABP=63.067;AC=2;AF=0.333333;AN=6;AO=13;CIGAR=1X;DP=93;DPB=93;DPRA=1.52174;EPP=31.2394;EPPR=176.728;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=516;QR=3156;RO=80;RPL=0;RPP=31.2394;RPPR=176.728;RPR=13;RUN=1;SAF=13;SAP=31.2394;SAR=0;SRF=80;SRP=176.728;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:53:47,6:47:1854:6:233:-5.38351,0,-151.11 0/0:23:23,0:23:908:0:0:0,-6.92369,-82.0232 0/1:17:10,7:10:394:7:283:-20.7259,0,-30.6986 dDocent_Contig_5085 27 . C A 222.204 . AB=0.294118;ABP=15.5282;AC=1;AF=0.166667;AN=6;AO=11;CIGAR=1X;DP=96;DPB=96;DPRA=0.670732;EPP=26.8965;EPPR=187.585;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=0.976471;PAO=0;PQA=0;PQR=0;PRO=0;QA=418;QR=3365;RO=85;RPL=0;RPP=26.8965;RPPR=187.585;RPR=11;RUN=1;SAF=11;SAP=26.8965;SAR=0;SRF=85;SRP=187.585;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:41:41,0:41:1614:0:0:0,-12.3422,-145.499 0/1:34:24,10:24:956:10:377:-24.0443,0,-76.1051 0/0:21:20,1:20:795:1:41:0,-2.22706,-67.7713 dDocent_Contig_5088 12 . A C 2974.77 . AB=0.32948;ABP=90.3964;AC=3;AF=0.5;AN=6;AO=114;CIGAR=1X;DP=346;DPB=346;DPRA=0;EPP=250.558;EPPR=506.792;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=0.973684;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=4516;QR=9320;RO=232;RPL=0;RPP=250.558;RPPR=506.792;RPR=114;RUN=1;SAF=114;SAP=250.558;SAR=0;SRF=232;SRP=506.792;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:240:165,75:165:6619:75:2955:-193.785,0,-523.158 0/1:38:19,19:19:756:19:757:-57.008,0,-56.9198 0/1:68:48,20:48:1945:20:804:-52.207,0,-154.769 dDocent_Contig_5089 33 . T C 9872.81 . AB=0.245283;ABP=212.086;AC=5;AF=0.833333;AN=6;AO=91;CIGAR=4M1X3M;DP=371;DPB=369.375;DPRA=0;EPP=200.614;EPPR=50.7827;GTI=0;LEN=1;MEANALT=3.66667;MQM=60;MQMR=60;NS=3;NUMALT=4;ODDS=5.55112e-17;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=3641;QR=871;RO=22;RPL=0;RPP=200.614;RPPR=50.7827;RPR=91;RUN=1;SAF=91;SAP=200.614;SAR=0;SRF=22;SRP=50.7827;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 1|1:194:7,13,2,122,50:7:281:13,2,122,50:522,81,4817,2021:-537.674,-496.768,-516.008,-533.102,-513.243,-555.654,-143.465,-123.606,-159.94,-129.893,-373.162,-353.302,-389.637,0,-381.264 1|1:79:0,0,5,44,28:0:0:0,5,44,28:0,200,1720,1101:-231.944,-231.944,-231.944,-215.469,-215.469,-213.964,-90.5543,-90.5543,-74.0783,-77.309,-141.391,-141.391,-124.915,0,-132.962 0|1:98:15,0,0,69,13:15:590:0,0,69,13:0,0,2764,519:-223.186,-227.701,-276.231,-227.701,-276.231,-276.231,0,-48.5286,-48.5286,-27.7575,-184.957,-233.487,-233.487,-5.78145,-229.573 dDocent_Contig_5090 16 . C A 1389.14 . AB=0.445652;ABP=5.3706;AC=4;AF=0.666667;AN=6;AO=48;CIGAR=1M3D1M1X;DP=99;DPB=75;DPRA=0;EPP=107.241;EPPR=111.584;GTI=0;LEN=1;MEANALT=1.33333;MQM=59.5833;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=0;PAIREDR=0.96;PAO=0;PQA=0;PQR=0;PRO=0;QA=1880;QR=1972;RO=50;RPL=0;RPP=107.241;RPPR=111.584;RPR=48;RUN=1;SAF=48;SAP=107.241;SAR=0;SRF=50;SRP=111.584;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|1:64:33,30:33:1297:30:1160:-85.3479,0,-97.6829 1|1:7:0,7:0:0:7:280:-25.5719,-2.10721,0 0|1:28:17,11:17:675:11:440:-31.5168,0,-52.6549 dDocent_Contig_5091 69 . G C 45.7103 . AB=0.2;ABP=14.7363;AC=1;AF=0.166667;AN=6;AO=3;CIGAR=1X;DP=115;DPB=115;DPRA=0.3;EPP=9.52472;EPPR=246.215;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=117;QR=3978;RO=112;RPL=3;RPP=9.52472;RPPR=246.215;RPR=0;RUN=1;SAF=3;SAP=9.52472;SAR=0;SRF=112;SRP=246.215;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:64:64,0:64:2286:0:0:0,-19.2659,-206.002 0/1:15:12,3:12:423:3:117:-6.39493,0,-33.8907 0/0:36:36,0:36:1269:0:0:0,-10.8371,-114.513 dDocent_Contig_5092 16 . A G 225.915 . AB=0.140496;ABP=138.844;AC=1;AF=0.166667;AN=6;AO=17;CIGAR=1X;DP=175;DPB=175;DPRA=4.48148;EPP=39.9253;EPPR=346.103;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=669;QR=6272;RO=158;RPL=0;RPP=39.9253;RPPR=346.103;RPR=17;RUN=1;SAF=17;SAP=39.9253;SAR=0;SRF=158;SRP=346.103;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:121:104,17:104:4131:17:669:-24.1143,0,-335.335 0/0:31:31,0:31:1224:0:0:0,-9.33193,-110.437 0/0:23:23,0:23:917:0:0:0,-6.92369,-82.8348 dDocent_Contig_5093 8 . C T 185.685 . AB=0.107143;ABP=453.436;AC=1;AF=0.166667;AN=6;AO=44;CIGAR=1X;DP=596;DPB=596;DPRA=0;EPP=98.5551;EPPR=1201.66;GTI=0;LEN=1;MEANALT=1;MQM=56.7273;MQMR=58.4366;NS=3;NUMALT=1;ODDS=0;PAIRED=0.386364;PAIREDR=0.838768;PAO=0;PQA=0;PQR=0;PRO=0;QA=1653;QR=21092;RO=552;RPL=0;RPP=98.5551;RPPR=1201.66;RPR=44;RUN=1;SAF=44;SAP=98.5551;SAR=0;SRF=552;SRP=1201.66;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:336:300,36:300:11485:36:1357:-20.0914,0,-908.925 0/0:83:80,3:80:3054:3:117:0,-14.0751,-263.958 0/0:177:172,5:172:6553:5:179:0,-36.827,-566.1 dDocent_Contig_5094 15 . G C 5372.33 . AB=0.714286;ABP=78.3914;AC=4;AF=0.666667;AN=6;AO=172;CIGAR=1X;DP=228;DPB=228;DPRA=0;EPP=376.504;EPPR=124.613;GTI=0;LEN=1;MEANALT=1;MQM=58.9244;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=6752;QR=2259;RO=56;RPL=0;RPP=376.504;RPPR=124.613;RPR=172;RUN=1;SAF=172;SAP=376.504;SAR=0;SRF=56;SRP=124.613;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:130:37,93:37:1497:93:3653:-288.891,0,-95.8365 1/1:39:2,37:2:75:37:1414:-118.963,-4.62137,0 0/1:59:17,42:17:687:42:1685:-132.902,0,-44.398 dDocent_Contig_5095 9 . G A 109.844 . AB=0.130952;ABP=102.381;AC=2;AF=0.333333;AN=6;AO=16;CIGAR=1X3M1X;DP=191;DPB=191;DPRA=0;EPP=22.5536;EPPR=356.96;GTI=0;LEN=1;MEANALT=2;MQM=58.125;MQMR=60;NS=3;NUMALT=2;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=609;QR=6285;RO=163;RPL=0;RPP=37.7539;RPPR=356.96;RPR=16;RUN=1;SAF=14;SAP=22.5536;SAR=2;SRF=163;SRP=356.96;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|0:107:98,5,4:98:3786:5,4:194,144:0,-13.5805,-323.038,-17.7685,-312.799,-327.5 0|1:37:30,5,2:30:1147:5,2:180,58:-5.70182,0,-92.6926,-10.1397,-89.5904,-103.668 0|1:47:35,6,6:35:1352:6,6:235,207:-8.80499,0,-109.267,-2.55385,-94.2686,-111.781 dDocent_Contig_5096 8 . C T 30.6625 . AB=0.142857;ABP=26.2761;AC=1;AF=0.166667;AN=6;AO=3;CIGAR=1X;DP=49;DPB=49;DPRA=1.5;EPP=9.52472;EPPR=102.898;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=117;QR=1772;RO=46;RPL=0;RPP=9.52472;RPPR=102.898;RPR=3;RUN=1;SAF=3;SAP=9.52472;SAR=0;SRF=46;SRP=102.898;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:21:18,3:18:692:3:117:-4.58875,0,-56.2914 0/0:9:9,0:9:345:0:0:0,-2.70927,-31.4082 0/0:19:19,0:19:735:0:0:0,-5.71957,-66.4808 dDocent_Contig_5097 22 . T G 62781.6 . AB=0;ABP=0;AC=6;AF=1;AN=6;AO=2032;CIGAR=1X;DP=2103;DPB=2103;DPRA=0;EPP=3909.68;EPPR=44.2683;GTI=0;LEN=1;MEANALT=2;MQM=43.3125;MQMR=59.6842;NS=3;NUMALT=1;ODDS=0;PAIRED=0.522146;PAIREDR=0.0526316;PAO=0;PQA=0;PQR=0;PRO=0;QA=79910;QR=706;RO=19;RPL=0;RPP=4415.44;RPPR=44.2683;RPR=2032;RUN=1;SAF=1972;SAP=3909.68;SAR=60;SRF=19;SRP=44.2683;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 1/1:857:0,837:0:0:837:32862:-2584.54,-251.962,0 1/1:581:12,560:12:457:560:22038:-1712.5,-131.105,0 1/1:665:7,635:7:249:635:25010:-1980.64,-170.871,0 dDocent_Contig_5098 41 . G A 7777.92 . AB=0.767647;ABP=214.563;AC=3;AF=0.5;AN=6;AO=261;CIGAR=1X;DP=340;DPB=340;DPRA=0;EPP=569.765;EPPR=174.557;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=9837;QR=3097;RO=79;RPL=0;RPP=569.765;RPPR=174.557;RPR=261;RUN=1;SAF=261;SAP=569.765;SAR=0;SRF=79;SRP=174.557;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:160:33,127:33:1319:127:4856:-388.853,0,-70.8067 0/1:95:22,73:22:829:73:2740:-218.161,0,-46.3173 0/1:85:24,61:24:949:61:2241:-176.301,0,-60.1276 dDocent_Contig_5099 10 . C T 706.495 . AB=0.3;ABP=37.7539;AC=3;AF=0.5;AN=6;AO=30;CIGAR=1X;DP=100;DPB=100;DPRA=0;EPP=68.1545;EPPR=155.013;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=1169;QR=2700;RO=70;RPL=0;RPP=68.1545;RPPR=155.013;RPR=30;RUN=1;SAF=30;SAP=68.1545;SAR=0;SRF=70;SRP=155.013;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:44:32,12:32:1240:12:475:-29.8558,0,-98.6213 0/1:35:25,10:25:943:10:378:-23.8335,0,-74.6333 0/1:21:13,8:13:517:8:316:-22.4831,0,-40.5552 dDocent_Contig_5100 107 . N C 1489.11 . AB=0;ABP=0;AC=6;AF=1;AN=6;AO=50;CIGAR=1X;DP=50;DPB=50;DPRA=0;EPP=111.584;EPPR=0;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=0;NS=3;NUMALT=1;ODDS=1.69407e-21;PAIRED=1;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=1639;QR=0;RO=0;RPL=0;RPP=111.584;RPPR=0;RPR=50;RUN=1;SAF=0;SAP=111.584;SAR=50;SRF=0;SRP=0;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 1/1:31:0,31:0:0:31:1035:-93.4537,-9.33193,0 1/1:9:0,9:0:0:9:274:-24.9594,-2.70927,0 1/1:10:0,10:0:0:10:330:-30.0206,-3.0103,0 dDocent_Contig_5101 107 . N G 488.611 . AB=0;ABP=0;AC=4;AF=1;AN=4;AO=16;CIGAR=2X;DP=16;DPB=16;DPRA=0;EPP=37.7539;EPPR=0;GTI=0;LEN=1;MEANALT=1;MQM=52.3125;MQMR=0;NS=2;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=535;QR=0;RO=0;RPL=0;RPP=37.7539;RPPR=0;RPR=16;RUN=1;SAF=0;SAP=37.7539;SAR=16;SRF=0;SRP=0;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 1|1:10:0,10:0:0:10:327:-29.5324,-3.0103,0 1|1:6:0,6:0:0:6:208:-19.0277,-1.80618,0 .:.:.:.:.:.:.:. dDocent_Contig_5106 13 . A G 155.712 . AB=0.225;ABP=29.2851;AC=3;AF=0.5;AN=6;AO=9;CIGAR=1X;DP=40;DPB=40;DPRA=0;EPP=22.5536;EPPR=70.3259;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=352;QR=1229;RO=31;RPL=0;RPP=22.5536;RPPR=70.3259;RPR=9;RUN=1;SAF=9;SAP=22.5536;SAR=0;SRF=31;SRP=70.3259;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:19:17,2:17:672:2:79:-1.77806,0,-55.0902 0/1:10:5,5:5:200:5:191:-14.5462,0,-15.3692 0/1:11:9,2:9:357:2:82:-4.46835,0,-29.1801 dDocent_Contig_5107 9 . G A 54.8662 . AB=0.130435;ABP=57.5803;AC=1;AF=0.166667;AN=6;AO=7;CIGAR=1X;DP=214;DPB=214;DPRA=5.79412;EPP=18.2106;EPPR=452.505;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=271;QR=7885;RO=207;RPL=0;RPP=18.2106;RPPR=452.505;RPR=7;RUN=1;SAF=7;SAP=18.2106;SAR=0;SRF=207;SRP=452.505;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:151:150,1:150:5692:1:40:0,-41.4598,-508.254 0/0:17:17,0:17:656:0:0:0,-5.11751,-59.377 0/1:46:40,6:40:1537:6:231:-7.31053,0,-124.755 dDocent_Contig_5111 7 . G A 28063 . AB=0;ABP=0;AC=6;AF=1;AN=6;AO=1329;CIGAR=1X;DP=1390;DPB=1390;DPRA=0;EPP=2888.9;EPPR=118.098;GTI=0;LEN=1;MEANALT=2.33333;MQM=27.2701;MQMR=43.8868;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=50722;QR=1548;RO=53;RPL=0;RPP=2888.9;RPPR=118.098;RPR=1329;RUN=1;SAF=1329;SAP=2888.9;SAR=0;SRF=53;SRP=118.098;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 1/1:832:21,806:21:539:806:30774:-1687.71,-204.394,0 1/1:138:12,126:12:401:126:4796:-222.459,-7.71331,0 1/1:420:20,397:20:608:397:15152:-895.648,-82.3385,0 dDocent_Contig_5123 9 . A G 4796.82 . AB=0.764423;ABP=129.332;AC=3;AF=0.5;AN=6;AO=159;CIGAR=1X;DP=208;DPB=208;DPRA=0;EPP=348.274;EPPR=109.412;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=1.38778e-17;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=6079;QR=1870;RO=49;RPL=0;RPP=348.274;RPPR=109.412;RPR=159;RUN=1;SAF=159;SAP=348.274;SAR=0;SRF=49;SRP=109.412;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:107:20,87:20:758:87:3313:-266.104,0,-36.3341 0/1:51:21,30:21:803:30:1160:-89.3466,0,-57.2423 0/1:50:8,42:8:309:42:1606:-129.754,0,-13.1215 dDocent_Contig_5124 18 . C A 2289.09 . AB=0.58209;ABP=10.8535;AC=3;AF=0.5;AN=6;AO=78;CIGAR=1X;DP=134;DPB=134;DPRA=0;EPP=172.385;EPPR=124.613;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=3043;QR=2238;RO=56;RPL=0;RPP=172.385;RPPR=124.613;RPR=78;RUN=1;SAF=78;SAP=172.385;SAR=0;SRF=56;SRP=124.613;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:40:10,30:10:404:30:1147:-91.477,0,-24.6784 0/1:57:30,27:30:1202:27:1064:-78.8994,0,-91.295 0/1:37:16,21:16:632:21:832:-64.056,0,-46.0678 dDocent_Contig_5125 10 . G T 161.075 . AB=0.0930233;ABP=436.042;AC=2;AF=0.333333;AN=6;AO=28;CIGAR=3M1X5M;DP=301;DPB=291.667;DPRA=0;EPP=63.8115;EPPR=565.422;GTI=0;LEN=1;MEANALT=2.33333;MQM=60;MQMR=60;NS=3;NUMALT=2;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=1086;QR=9973;RO=259;RPL=0;RPP=63.8115;RPPR=565.422;RPR=28;RUN=1;SAF=28;SAP=63.8115;SAR=0;SRF=259;SRP=565.422;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|1:177:157,0,19:157:6065:0,19:0,735:-13.0957,-60.3574,-558.464,0,-498.094,-492.374 0|1:43:36,3,4:36:1386:3,4:109,159:-2.27323,-4.22309,-117.107,0,-104.918,-112.614 0|0:81:66,9,5:66:2522:9,5:320,192:-6.19049,0,-204.21,-10.2921,-191.161,-215.729 dDocent_Contig_5126 98 . N A 59.8485 . AB=0;ABP=0;AC=2;AF=1;AN=2;AO=2;CIGAR=6X;DP=2;DPB=2;DPRA=0;EPP=7.35324;EPPR=0;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=0;NS=1;NUMALT=1;ODDS=5.99146;PAIRED=1;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=63;QR=0;RO=0;RPL=2;RPP=7.35324;RPPR=0;RPR=0;RUN=1;SAF=2;SAP=7.35324;SAR=0;SRF=0;SRP=0;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL .:.:.:.:.:.:.:. .:.:.:.:.:.:.:. 1|1:2:0,2:0:0:2:63:-5.98377,-0.60206,0 dDocent_Contig_5128 9 . G A 1474.96 . AB=0.131034;ABP=174.467;AC=2;AF=0.333333;AN=6;AO=19;CIGAR=1M4I1X2M1D1M;DP=145;DPB=184.5;DPRA=0;EPP=44.2683;EPPR=146.327;GTI=0;LEN=1;MEANALT=2.66667;MQM=40;MQMR=60;NS=3;NUMALT=3;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=756;QR=2583;RO=66;RPL=0;RPP=44.2683;RPPR=146.327;RPR=19;RUN=1;SAF=19;SAP=44.2683;SAR=0;SRF=66;SRP=146.327;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|0:103:42,0,11,50:42:1654:0,11,50:0,440,1953:-136.12,-148.763,-284.843,-115.454,-251.535,-248.223,0,-136.086,-102.783,-121.035 0|1:19:12,1,3,3:12:469:1,3,3:38,118,115:-5.37953,-6.06473,-44.3403,0,-35.6553,-37.6784,-0.177259,-35.8291,-29.7702,-37.8521 0|1:23:12,2,5,4:12:460:2,5,4:80,198,149:-11.4319,-8.98654,-46.1456,0,-31.7095,-36.2598,-3.56205,-35.2646,-26.2834,-40.1158 dDocent_Contig_5129 8 . C A 1181.59 . AB=0.575342;ABP=6.60959;AC=3;AF=0.5;AN=6;AO=42;CIGAR=1X;DP=73;DPB=73;DPRA=0;EPP=94.2121;EPPR=70.3259;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=1607;QR=1204;RO=31;RPL=0;RPP=94.2121;RPPR=70.3259;RPR=42;RUN=1;SAF=42;SAP=94.2121;SAR=0;SRF=31;SRP=70.3259;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:36:15,21:15:583:21:808:-62.2085,0,-41.976 0/1:22:8,14:8:309:14:532:-41.5967,0,-21.5503 0/1:15:8,7:8:312:7:267:-19.8763,0,-23.9295 dDocent_Contig_5130 70 . G A 874.248 . AB=0.195745;ABP=191.965;AC=2;AF=0.333333;AN=6;AO=50;CIGAR=1X;DP=288;DPB=288;DPRA=0;EPP=111.584;EPPR=519.821;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=0.991597;PAO=0;PQA=0;PQR=0;PRO=0;QA=1939;QR=9216;RO=238;RPL=50;RPP=111.584;RPPR=519.821;RPR=0;RUN=1;SAF=50;SAP=111.584;SAR=0;SRF=238;SRP=519.821;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:172:136,36:136:5323:36:1425:-76.7201,0,-427.166 0/0:53:49,4:49:1866:4:149:0,-2.18362,-154.394 0/1:63:53,10:53:2027:10:365:-14.2276,0,-163.701 dDocent_Contig_5131 40 . C G 201.769 . AB=0.234043;ABP=31.8863;AC=3;AF=0.5;AN=6;AO=11;CIGAR=1X;DP=47;DPB=47;DPRA=0;EPP=26.8965;EPPR=81.1833;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=430;QR=1442;RO=36;RPL=0;RPP=26.8965;RPPR=81.1833;RPR=11;RUN=1;SAF=11;SAP=26.8965;SAR=0;SRF=36;SRP=81.1833;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:11:9,2:9:362:2:78:-4.09197,0,-29.6327 0/1:22:15,7:15:603:7:270:-18.0375,0,-47.9862 0/1:14:12,2:12:477:2:82:-3.56526,0,-39.0654 dDocent_Contig_5132 19 . G A 2681 . AB=0.357143;ABP=52.644;AC=3;AF=0.5;AN=6;AO=100;CIGAR=1X;DP=280;DPB=280;DPRA=0;EPP=220.158;EPPR=393.875;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=1.38778e-17;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=3968;QR=7058;RO=180;RPL=0;RPP=220.158;RPPR=393.875;RPR=100;RUN=1;SAF=100;SAP=220.158;SAR=0;SRF=180;SRP=393.875;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:140:89,51:89:3467:51:2019:-139.762,0,-269.934 0/1:68:42,26:42:1620:26:1040:-73.4231,0,-125.568 0/1:72:49,23:49:1971:23:909:-60.4377,0,-155.907 dDocent_Contig_5133 8 . C T 153.439 . AB=0.28;ABP=13.5202;AC=1;AF=0.166667;AN=6;AO=9;CIGAR=1X;DP=69;DPB=69;DPRA=2.15385;EPP=22.5536;EPPR=133.299;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=345;QR=2282;RO=60;RPL=0;RPP=22.5536;RPPR=133.299;RPR=9;RUN=1;SAF=9;SAP=22.5536;SAR=0;SRF=60;SRP=133.299;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:25:18,7:18:682:7:267:-16.8667,0,-54.1848 0/0:31:29,2:29:1107:2:78:0,-1.92846,-92.5292 0/0:13:13,0:13:493:0:0:0,-3.91339,-44.7153 dDocent_Contig_5134 120 . A T 456.052 . AB=0.362069;ABP=12.5947;AC=2;AF=0.333333;AN=6;AO=26;CIGAR=1X;DP=131;DPB=131;DPRA=0;EPP=59.4686;EPPR=231.015;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=905;QR=3562;RO=105;RPL=0;RPP=59.4686;RPPR=231.015;RPR=26;RUN=1;SAF=0;SAP=59.4686;SAR=26;SRF=0;SRP=231.015;SRR=105;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:73:68,5:68:2332:5:175:0,-5.88149,-194.05 0/1:17:15,2:15:496:2:70:-1.52989,0,-39.8379 0/1:41:22,19:22:734:19:660:-47.3827,0,-54.027 dDocent_Contig_5135 144 . T G 99.5074 . AB=0.170732;ABP=41.6201;AC=1;AF=0.166667;AN=6;AO=16;CIGAR=1X;DP=170;DPB=170;DPRA=8.94444;EPP=37.7539;EPPR=337.417;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=630;QR=5962;RO=154;RPL=0;RPP=37.7539;RPPR=337.417;RPR=16;RUN=1;SAF=0;SAP=37.7539;SAR=16;SRF=0;SRP=337.417;SRR=154;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:120:111,9:111:4275:9:366:0,-2.81865,-351.462 0/0:9:9,0:9:353:0:0:0,-2.70927,-32.1312 0/1:41:34,7:34:1334:7:264:-11.7746,0,-107.989 dDocent_Contig_5136 10 . A C 78.5917 . AB=0.2;ABP=22.5536;AC=2;AF=0.333333;AN=6;AO=5;CIGAR=1X;DP=41;DPB=41;DPRA=0.78125;EPP=13.8677;EPPR=81.1833;GTI=0;LEN=1;MEANALT=1;MQM=56.4;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=0;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=202;QR=1317;RO=36;RPL=0;RPP=13.8677;RPPR=81.1833;RPR=5;RUN=1;SAF=5;SAP=13.8677;SAR=0;SRF=36;SRP=81.1833;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:16:16,0:16:595:0:0:0,-4.81648,-53.8736 0/1:15:13,2:13:456:2:82:-3.19591,0,-36.8464 0/1:10:7,3:7:266:3:120:-8.17701,0,-21.287 dDocent_Contig_5138 9 . G A 1033.42 . AB=0.219008;ABP=168.975;AC=3;AF=0.5;AN=6;AO=53;CIGAR=1X;DP=242;DPB=242;DPRA=0;EPP=118.098;EPPR=413.419;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=2008;QR=7219;RO=189;RPL=0;RPP=118.098;RPPR=413.419;RPR=53;RUN=1;SAF=53;SAP=118.098;SAR=0;SRF=189;SRP=413.419;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:156:128,28:128:4860:28:1072:-49.826,0,-390.474 0/1:34:22,12:22:849:12:457:-31.2446,0,-66.4971 0/1:52:39,13:39:1510:13:479:-27.7945,0,-120.519 dDocent_Contig_5139 21 . T C 2056.76 . AB=0.584746;ABP=10.3712;AC=3;AF=0.5;AN=6;AO=69;CIGAR=1X;DP=118;DPB=118;DPRA=0;EPP=152.842;EPPR=109.412;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=2731;QR=1928;RO=49;RPL=0;RPP=152.842;RPPR=109.412;RPR=69;RUN=1;SAF=69;SAP=152.842;SAR=0;SRF=49;SRP=109.412;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:56:35,21:35:1371:21:846:-59.5962,0,-106.796 0/1:33:5,28:5:199:28:1086:-88.1019,0,-8.35407 0/1:29:9,20:9:358:20:799:-63.5005,0,-23.8528 dDocent_Contig_5140 16 . G A 10271.3 . AB=0.890675;ABP=415.304;AC=4;AF=0.666667;AN=6;AO=318;CIGAR=1X;DP=355;DPB=355;DPRA=0;EPP=693.539;EPPR=83.3548;GTI=0;LEN=1;MEANALT=1;MQM=59.6792;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=12613;QR=1446;RO=37;RPL=0;RPP=693.539;RPPR=83.3548;RPR=318;RUN=1;SAF=318;SAP=693.539;SAR=0;SRF=37;SRP=83.3548;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:204:22,182:22:862:182:7228:-588.723,0,-16.4782 1/1:44:3,41:3:113:41:1635:-136.831,-2.70651,0 0/1:107:12,95:12:471:95:3750:-305.095,0,-10.5274 dDocent_Contig_5141 9 . G A 302.122 . AB=0.121118;ABP=404.503;AC=3;AF=0.5;AN=6;AO=39;CIGAR=1X;DP=322;DPB=322;DPRA=0;EPP=87.6977;EPPR=617.537;GTI=0;LEN=1;MEANALT=1;MQM=48.0769;MQMR=59.9788;NS=3;NUMALT=1;ODDS=0;PAIRED=0.025641;PAIREDR=0.777385;PAO=0;PQA=0;PQR=0;PRO=0;QA=1475;QR=10751;RO=283;RPL=0;RPP=87.6977;RPPR=617.537;RPR=39;RUN=1;SAF=39;SAP=87.6977;SAR=0;SRF=283;SRP=617.537;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:179:157,22:157:5960:22:837:-20.7186,0,-482.464 0/1:68:58,10:58:2188:10:372:-12.9774,0,-176.672 0/1:75:68,7:68:2603:7:266:-1.45044,0,-211.89 dDocent_Contig_5142 9 . A G 1791.38 . AB=0.690476;ABP=16.2459;AC=4;AF=0.666667;AN=6;AO=56;CIGAR=1X;DP=69;DPB=69;DPRA=0;EPP=124.613;EPPR=31.2394;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=3.46945e-18;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=2159;QR=500;RO=13;RPL=0;RPP=124.613;RPPR=31.2394;RPR=56;RUN=1;SAF=56;SAP=124.613;SAR=0;SRF=13;SRP=31.2394;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 1/1:27:0,27:0:0:27:1043:-94.1772,-8.12781,0 0/1:14:8,6:8:307:6:234:-17.2167,0,-23.7773 0/1:28:5,23:5:193:23:882:-71.2674,0,-9.31252 dDocent_Contig_5143 60 . A T 248.042 . AB=0.235294;ABP=34.0496;AC=2;AF=0.333333;AN=6;AO=13;CIGAR=1X;DP=70;DPB=70;DPRA=0;EPP=31.2394;EPPR=126.784;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=0.982456;PAO=0;PQA=0;PQR=0;PRO=0;QA=517;QR=2224;RO=57;RPL=13;RPP=31.2394;RPPR=126.784;RPR=0;RUN=1;SAF=13;SAP=31.2394;SAR=0;SRF=57;SRP=126.784;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:30:22,8:22:856:8:314:-19.5903,0,-68.3169 0/1:21:17,4:17:651:4:163:-8.7368,0,-52.5991 0/0:19:18,1:18:717:1:40:0,-1.72389,-60.8613 dDocent_Contig_5144 8 . C G 188.993 . AB=0.236842;ABP=25.8679;AC=1;AF=0.166667;AN=6;AO=9;CIGAR=1X;DP=87;DPB=87;DPRA=1.55102;EPP=22.5536;EPPR=172.385;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=57.2308;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=0.923077;PAO=0;PQA=0;PQR=0;PRO=0;QA=350;QR=2983;RO=78;RPL=0;RPP=22.5536;RPPR=172.385;RPR=9;RUN=1;SAF=9;SAP=22.5536;SAR=0;SRF=78;SRP=172.385;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:38:29,9:29:1107:9:350:-20.4222,0,-82.6827 0/0:18:18,0:18:688:0:0:0,-5.41854,-59.5166 0/0:31:31,0:31:1188:0:0:0,-9.33193,-107.214 dDocent_Contig_5145 35 . T C 398.299 . AB=0.196262;ABP=88.753;AC=1;AF=0.166667;AN=6;AO=26;CIGAR=1M1X1M;DP=204;DPB=203;DPRA=0;EPP=59.4686;EPPR=383.018;GTI=0;LEN=1;MEANALT=1.33333;MQM=60;MQMR=60;NS=3;NUMALT=2;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=1009;QR=6889;RO=175;RPL=0;RPP=59.4686;RPPR=383.018;RPR=26;RUN=1;SAF=26;SAP=59.4686;SAR=0;SRF=175;SRP=383.018;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|1:107:86,0,21:86:3385:0,21:0,814:-41.3528,-67.2414,-345.667,0,-278.814,-272.492 0|0:45:39,3,3:39:1500:3,3:119,121:0,-1.9478,-124.151,-1.76283,-115.079,-123.973 0|0:52:50,0,2:50:2004:0,2:0,74:0,-15.0515,-180.184,-8.62813,-174.132,-173.53 dDocent_Contig_5146 17 . T G 55.3548 . AB=0.138889;ABP=43.7857;AC=1;AF=0.166667;AN=6;AO=8;CIGAR=1X;DP=130;DPB=130;DPRA=0;EPP=20.3821;EPPR=242.513;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=0.95082;PAO=0;PQA=0;PQR=0;PRO=0;QA=319;QR=4845;RO=122;RPL=0;RPP=20.3821;RPPR=267.93;RPR=8;RUN=1;SAF=8;SAP=20.3821;SAR=0;SRF=119;SRP=242.513;SRR=3;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:49:48,1:48:1937:1:41:0,-10.6559,-170.429 0/1:36:31,5:31:1214:5:198:-7.35939,0,-98.6946 0/0:45:43,2:43:1694:2:80:0,-5.95477,-145.097 dDocent_Contig_5147 16 . C A 760.2 . AB=0.279661;ABP=52.7701;AC=3;AF=0.5;AN=6;AO=33;CIGAR=1X;DP=118;DPB=118;DPRA=0;EPP=74.6689;EPPR=187.585;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=1289;QR=3364;RO=85;RPL=0;RPP=74.6689;RPPR=187.585;RPR=33;RUN=1;SAF=33;SAP=74.6689;SAR=0;SRF=85;SRP=187.585;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:54:41,13:41:1644:13:506:-29.6302,0,-131.933 0/1:42:29,13:29:1121:13:510:-33.6013,0,-88.5323 0/1:22:15,7:15:599:7:273:-18.3114,0,-47.6261 dDocent_Contig_5148 19 . G A 1226.64 . AB=0.216117;ABP=194.108;AC=3;AF=0.5;AN=6;AO=59;CIGAR=1X;DP=273;DPB=273;DPRA=0;EPP=131.127;EPPR=459.06;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=0.976636;PAO=0;PQA=0;PQR=0;PRO=0;QA=2327;QR=8501;RO=214;RPL=0;RPP=131.127;RPPR=467.705;RPR=59;RUN=1;SAF=59;SAP=131.127;SAR=0;SRF=213;SRP=459.06;SRR=1;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:99:76,23:76:3017:23:925:-53.7528,0,-241.821 0/1:85:62,23:62:2468:23:896:-55.3541,0,-196.679 0/1:89:76,13:76:3016:13:506:-19.0804,0,-244.73 dDocent_Contig_5149 19 . T A 5871.52 . AB=0.255814;ABP=515.225;AC=3;AF=0.5;AN=6;AO=253;CIGAR=1X2M1X;DP=989;DPB=989;DPRA=0;EPP=552.393;EPPR=1596.87;GTI=0;LEN=1;MEANALT=1.66667;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=0.993188;PAO=0;PQA=0;PQR=0;PRO=0;QA=9888;QR=28720;RO=734;RPL=0;RPP=552.393;RPPR=1596.87;RPR=253;RUN=1;SAF=253;SAP=552.393;SAR=0;SRF=734;SRP=1596.87;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|1:513:378,135:378:14822:135:5253:-318.263,0,-1178.59 0|1:150:114,36:114:4451:36:1397:-80.8439,0,-355.437 0|1:326:242,82:242:9447:82:3238:-193.568,0,-751.835 dDocent_Contig_5150 8 . C T 249.148 . AB=0.114286;ABP=93.4676;AC=1;AF=0.166667;AN=6;AO=8;CIGAR=2X;DP=253;DPB=253;DPRA=0;EPP=20.3821;EPPR=463.362;GTI=0;LEN=1;MEANALT=2;MQM=60;MQMR=60;NS=3;NUMALT=2;ODDS=2.77556e-17;PAIRED=1;PAIREDR=0.995283;PAO=0;PQA=0;PQR=0;PRO=0;QA=306;QR=8088;RO=212;RPL=0;RPP=20.3821;RPPR=463.362;RPR=8;RUN=1;SAF=8;SAP=20.3821;SAR=0;SRF=212;SRP=463.362;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|0:101:87,0,12:87:3307:0,12:0,448:-8.24842,-34.438,-305.668,0,-271.206,-267.594 0|1:70:54,8,8:54:2066:8,8:306,302:-8.85663,0,-167.135,-0.362306,-144.792,-167.493 0|0:82:71,0,11:71:2715:0,11:0,418:-13.274,-34.6471,-257.435,0,-223.168,-219.857 dDocent_Contig_5151 9 . T G 3926.38 . AB=0.552419;ABP=8.92931;AC=3;AF=0.5;AN=6;AO=137;CIGAR=1X;DP=248;DPB=248;DPRA=0;EPP=300.502;EPPR=244.044;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=5245;QR=4233;RO=111;RPL=0;RPP=300.502;RPPR=244.044;RPR=137;RUN=1;SAF=137;SAP=300.502;SAR=0;SRF=111;SRP=244.044;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:153:64,89:64:2429:89:3399:-259.987,0,-172.757 0/1:22:8,14:8:310:14:535:-41.8718,0,-21.6409 0/1:73:39,34:39:1494:34:1311:-96.3012,0,-112.759 dDocent_Contig_5152 98 . N T 58.9005 . AB=0;ABP=0;AC=2;AF=1;AN=2;AO=2;CIGAR=1X;DP=2;DPB=2;DPRA=0;EPP=7.35324;EPPR=0;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=0;NS=1;NUMALT=1;ODDS=5.99146;PAIRED=1;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=62;QR=0;RO=0;RPL=2;RPP=7.35324;RPPR=0;RPR=0;RUN=1;SAF=2;SAP=7.35324;SAR=0;SRF=0;SRP=0;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL ./.:.:.:.:.:.:.:. ./.:.:.:.:.:.:.:. 1/1:2:0,2:0:0:2:62:-5.88896,-0.60206,0 dDocent_Contig_5155 7 . T A 1224 . AB=0.405172;ABP=12.0706;AC=3;AF=0.5;AN=6;AO=47;CIGAR=1X;DP=116;DPB=116;DPRA=0;EPP=105.07;EPPR=152.842;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=1798;QR=2634;RO=69;RPL=0;RPP=105.07;RPPR=152.842;RPR=47;RUN=1;SAF=47;SAP=105.07;SAR=0;SRF=69;SRP=152.842;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:65:33,32:33:1271:32:1225:-90.9788,0,-95.1149 0/1:27:17,10:17:636:10:378:-26.2444,0,-49.4456 0/1:24:19,5:19:727:5:195:-10.6995,0,-58.5362 dDocent_Contig_5157 22 . G A 1587.79 . AB=0.075;ABP=128.521;AC=3;AF=0.5;AN=6;AO=6;CIGAR=4M1X2M4I3M1I1X1M;DP=117;DPB=133.25;DPRA=0;EPP=16.0391;EPPR=96.3836;GTI=0;LEN=1;MEANALT=5;MQM=60;MQMR=60;NS=3;NUMALT=3;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=234;QR=1700;RO=43;RPL=0;RPP=16.0391;RPPR=96.3836;RPR=6;RUN=1;SAF=6;SAP=16.0391;SAR=0;SRF=43;SRP=96.3836;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|1:80:26,10,36,6:26:1022:10,36,6:401,1416,234:-108.2,-82.9864,-164.036,0,-51.016,-73.22,-96.7943,-147.813,-64.8244,-179.047 0|1:12:7,0,5,0:7:277:0,5,0:0,196,0:-14.2437,-16.3509,-39.1526,0,-23.1928,-21.6877,-16.3509,-39.1526,-23.1928,-39.1526 0|1:25:10,1,14,0:10:401:1,14,0:40,546,0:-41.8576,-41.5721,-74.3144,0,-29.7446,-28.8252,-44.8679,-74.6154,-33.0396,-77.9107 dDocent_Contig_5158 52 . T G 937.437 . AB=0.288889;ABP=55.2704;AC=3;AF=0.5;AN=6;AO=39;CIGAR=1X;DP=135;DPB=135;DPRA=0;EPP=87.6977;EPPR=207.129;GTI=0;LEN=1;MEANALT=1.33333;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=1539;QR=3750;RO=94;RPL=39;RPP=87.6977;RPPR=207.129;RPR=0;RUN=1;SAF=39;SAP=87.6977;SAR=0;SRF=94;SRP=207.129;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:96:63,31:63:2511:31:1217:-81.2514,0,-197.572 0/1:14:12,2:12:478:2:80:-3.37737,0,-39.1548 0/1:25:19,6:19:761:6:242:-14.6318,0,-61.2854 dDocent_Contig_5159 24 . C G 39.8568 . AB=0.118421;ABP=99.1265;AC=1;AF=0.166667;AN=6;AO=11;CIGAR=1X;DP=194;DPB=194;DPRA=1.2963;EPP=26.8965;EPPR=398.218;GTI=0;LEN=1;MEANALT=1.5;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=394;QR=7233;RO=182;RPL=0;RPP=26.8965;RPPR=398.218;RPR=11;RUN=1;SAF=11;SAP=26.8965;SAR=0;SRF=182;SRP=398.218;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:76:66,9:66:2613:9:313:-5.50851,0,-212.313 0/0:64:62,2:62:2472:2:81:0,-11.5802,-214.938 0/0:54:54,0:54:2148:0:0:0,-16.2556,-193.496 dDocent_Contig_5160 77 . A G 506.502 . AB=0.5;ABP=3.0103;AC=3;AF=0.5;AN=6;AO=23;CIGAR=1X;DP=46;DPB=46;DPRA=0;EPP=52.9542;EPPR=52.9542;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=763;QR=800;RO=23;RPL=23;RPP=52.9542;RPPR=52.9542;RPR=0;RUN=1;SAF=23;SAP=52.9542;SAR=0;SRF=23;SRP=52.9542;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:21:13,8:13:451:8:275:-18.763,0,-34.6 0/1:6:1,5:1:35:5:170:-13.8284,0,-1.69245 0/1:19:9,10:9:314:10:318:-23.2081,0,-22.8783 dDocent_Contig_5161 89 . A C 2048.86 . AB=0.635593;ABP=21.8543;AC=3;AF=0.5;AN=6;AO=75;CIGAR=1X2M1X;DP=118;DPB=118;DPRA=0;EPP=165.871;EPPR=94.2121;GTI=0;LEN=1;MEANALT=1.33333;MQM=60;MQMR=59.9286;NS=3;NUMALT=1;ODDS=0;PAIRED=0.986667;PAIREDR=0.97619;PAO=0;PQA=0;PQR=0;PRO=0;QA=2704;QR=1502;RO=42;RPL=75;RPP=165.871;RPPR=94.2121;RPR=0;RUN=1;SAF=75;SAP=165.871;SAR=0;SRF=42;SRP=94.2121;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|1:69:25,44:25:903:44:1579:-121.623,0,-60.816 0|1:21:2,19:2:70:19:694:-56.4651,0,-0.325122 0|1:28:15,12:15:529:12:431:-30.6431,0,-39.4537 dDocent_Contig_5162 9 . C A 2512.39 . AB=0.133592;ABP=2106.7;AC=3;AF=0.5;AN=6;AO=241;CIGAR=1X;DP=1804;DPB=1804;DPRA=0;EPP=526.335;EPPR=3314.51;GTI=0;LEN=1;MEANALT=2.33333;MQM=47.6141;MQMR=59.6911;NS=3;NUMALT=1;ODDS=1.11022e-16;PAIRED=1;PAIREDR=0.999344;PAO=0;PQA=0;PQR=0;PRO=0;QA=9138;QR=58046;RO=1525;RPL=0;RPP=526.335;RPPR=3314.51;RPR=241;RUN=1;SAF=241;SAP=526.335;SAR=0;SRF=1525;SRP=3314.51;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:989:828,140:828:31494:140:5273:-165.018,0,-2537.33 0/1:263:222,28:222:8425:28:1052:-12.0503,0,-681.181 0/1:552:475,73:475:18127:73:2813:-79.6933,0,-1461.81 dDocent_Contig_5163 31 . G A 5990.35 . AB=0.273333;ABP=404.646;AC=3;AF=0.5;AN=6;AO=246;CIGAR=1X;DP=900;DPB=900;DPRA=0;EPP=537.193;EPPR=1423.15;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=5.55112e-17;PAIRED=1;PAIREDR=0.998471;PAO=0;PQA=0;PQR=0;PRO=0;QA=9725;QR=25798;RO=654;RPL=0;RPP=537.193;RPPR=1423.15;RPR=246;RUN=1;SAF=246;SAP=537.193;SAR=0;SRF=654;SRP=1423.15;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:398:301,97:301:11882:97:3820:-224.02,0,-948.788 0/1:261:190,71:190:7464:71:2800:-173.549,0,-592.885 0/1:241:163,78:163:6452:78:3105:-206.989,0,-507.889 dDocent_Contig_5165 148 . T C 447.359 . AB=0.206897;ABP=111.21;AC=3;AF=0.5;AN=6;AO=30;CIGAR=1X;DP=145;DPB=145;DPRA=0;EPP=68.1545;EPPR=252.73;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=6.93889e-18;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=1032;QR=3914;RO=115;RPL=0;RPP=68.1545;RPPR=252.73;RPR=30;RUN=1;SAF=0;SAP=68.1545;SAR=30;SRF=0;SRP=252.73;SRR=115;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:53:47,6:47:1619:6:203:-2.6474,0,-130.047 0/1:32:24,8:24:801:8:279:-15.816,0,-62.768 0/1:60:44,16:44:1494:16:550:-31.7639,0,-116.689 dDocent_Contig_5166 172 . T A 1585.43 . AB=0.426471;ABP=9.39698;AC=3;AF=0.5;AN=6;AO=58;CIGAR=1X;DP=136;DPB=136;DPRA=0;EPP=128.956;EPPR=172.385;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=2267;QR=3013;RO=78;RPL=58;RPP=128.956;RPPR=172.385;RPR=0;RUN=1;SAF=0;SAP=128.956;SAR=58;SRF=0;SRP=172.385;SRR=78;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:114:61,53:61:2385:53:2064:-151.63,0,-180.491 0/1:12:9,3:9:317:3:122:-7.76013,0,-25.2504 0/1:10:8,2:8:311:2:81:-4.67543,0,-25.3421 dDocent_Contig_5168 11 . A G 1412.77 . AB=0.323529;ABP=48.9944;AC=3;AF=0.5;AN=6;AO=55;CIGAR=1X;DP=170;DPB=170;DPRA=0;EPP=122.441;EPPR=252.73;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=2189;QR=4621;RO=115;RPL=0;RPP=122.441;RPPR=252.73;RPR=55;RUN=1;SAF=55;SAP=122.441;SAR=0;SRF=115;SRP=252.73;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:93:65,28:65:2618:28:1126:-73.6256,0,-207.746 0/1:37:25,12:25:1000:12:481:-32.5029,0,-79.1604 0/1:40:25,15:25:1003:15:582:-40.6719,0,-78.5238 dDocent_Contig_5169 64 . G A 1285.63 . AB=0.447368;ABP=5.75321;AC=3;AF=0.5;AN=6;AO=51;CIGAR=1X;DP=114;DPB=114;DPRA=0;EPP=113.755;EPPR=139.813;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=1860;QR=2241;RO=63;RPL=51;RPP=113.755;RPPR=139.813;RPR=0;RUN=1;SAF=51;SAP=113.755;SAR=0;SRF=63;SRP=139.813;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:51:27,24:27:975:24:876:-63.8084,0,-72.7126 0/1:22:11,11:11:403:11:417:-31.2581,0,-29.9935 0/1:41:25,16:25:863:16:567:-39.0197,0,-65.6447 dDocent_Contig_5170 155 . T G 2921.46 . AB=0.235772;ABP=226.778;AC=1;AF=0.166667;AN=6;AO=87;CIGAR=4M1X2M2X7M;DP=369;DPB=418.125;DPRA=0;EPP=191.928;EPPR=122.441;GTI=0;LEN=1;MEANALT=8;MQM=60;MQMR=60;NS=3;NUMALT=6;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=3092;QR=2001;RO=55;RPL=87;RPP=191.928;RPPR=122.441;RPR=0;RUN=1;SAF=0;SAP=191.928;SAR=87;SRF=0;SRP=122.441;SRR=55;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|1:202:33,23,33,58,30,17,4:33:1190:23,33,58,30,17,4:659,1007,2082,1054,551,140:-159.9,-117.471,-207.661,-89.1682,-133.922,-176.349,0,-44.7577,-16.4547,-79.6602,-84.0399,-128.794,-100.491,-11.3242,-172.126,-125.381,-170.133,-141.831,-52.6664,-136.704,-217.378,-158.443,-203.195,-174.893,-85.7294,-169.766,-211.106,-254.354 0|0:54:1,3,15,12,21,0,1:1:37:3,15,12,21,0,1:102,480,412,712,0,37:-93.0732,-85.1,-87.2247,-54.7068,-49.4607,-53.2191,-59.9236,-54.6771,-24.2852,-59.3392,-35.6353,-30.3888,0,-5.20883,-32.3419,-93.3742,-88.1278,-57.7346,-62.9515,-38.6635,-96.4019,-90.3465,-85.1,-54.7068,-59.9236,-35.6353,-93.3742,-93.0732 0|0:113:21,17,17,17,20,8,6:21:774:17,17,17,20,8,6:573,519,598,634,275,203:-44.695,-4.58006,-62.7694,-9.44502,-26.3165,-67.6328,-2.33664,-19.2087,-24.0733,-60.5267,0,-16.8719,-21.7368,-14.6286,-57.2853,-28.6841,-45.555,-50.4189,-43.3121,-40.9744,-89.5819,-34.5641,-51.4349,-56.2987,-49.1921,-46.8542,-75.5382,-96.0638 dDocent_Contig_5171 88 . C T 43.5398 . AB=0.136364;ABP=53.5464;AC=1;AF=0.166667;AN=6;AO=6;CIGAR=1X;DP=203;DPB=203;DPRA=0.553459;EPP=16.0391;EPPR=430.79;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=212;QR=6955;RO=197;RPL=6;RPP=16.0391;RPPR=430.79;RPR=0;RUN=1;SAF=6;SAP=16.0391;SAR=0;SRF=197;SRP=430.79;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:137:137,0:137:4844:0:0:0,-41.2411,-436.092 0/0:22:22,0:22:782:0:0:0,-6.62266,-70.6979 0/1:44:38,6:38:1329:6:212:-6.17787,0,-106.658 dDocent_Contig_5172 31 . C T 7869.5 . AB=0.340206;ABP=196.63;AC=3;AF=0.5;AN=6;AO=297;CIGAR=1X2M1X1M3X;DP=873;DPB=873;DPRA=0;EPP=647.938;EPPR=1036.63;GTI=0;LEN=1;MEANALT=9.66667;MQM=56.0337;MQMR=53.7941;NS=3;NUMALT=1;ODDS=0;PAIRED=0.996633;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=11710;QR=18768;RO=476;RPL=0;RPP=647.938;RPPR=1036.63;RPR=297;RUN=1;SAF=297;SAP=647.938;SAR=0;SRF=476;SRP=1036.63;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|1:343:171,129:171:6706:129:5117:-355.877,0,-497.037 0|1:268:168,77:168:6633:77:3020:-190.384,0,-500.001 0|1:262:137,91:137:5429:91:3573:-246.212,0,-399.208 dDocent_Contig_5175 22 . G A 18740.8 . AB=0.811189;ABP=604.417;AC=3;AF=0.5;AN=6;AO=580;CIGAR=1X;DP=715;DPB=715;DPRA=0;EPP=1262.46;EPPR=293.988;GTI=0;LEN=1;MEANALT=1.33333;MQM=59.9259;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=0.996552;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=23292;QR=5365;RO=134;RPL=0;RPP=1262.46;RPPR=293.988;RPR=580;RUN=1;SAF=580;SAP=1262.46;SAR=0;SRF=134;SRP=293.988;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:345:64,280:64:2568:280:11253:-907.988,0,-127.282 0/1:180:26,154:26:1037:154:6181:-501.825,0,-39.4398 0/1:190:44,146:44:1760:146:5858:-469.785,0,-101.421 dDocent_Contig_5176 12 . G C 82.3489 . AB=0.25;ABP=11.6962;AC=1;AF=0.166667;AN=6;AO=7;CIGAR=1X;DP=220;DPB=220;DPRA=0.297101;EPP=18.2106;EPPR=465.534;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=283;QR=8562;RO=213;RPL=0;RPP=18.2106;RPPR=465.534;RPR=7;RUN=1;SAF=7;SAP=18.2106;SAR=0;SRF=213;SRP=465.534;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:138:138,0:138:5573:0:0:0,-41.5421,-501.363 0/1:16:12,4:12:481:4:161:-10.0588,0,-38.8244 0/0:66:63,3:63:2508:3:122:0,-8.49549,-214.484 dDocent_Contig_5177 26 . T C 371.211 . AB=0.129964;ABP=332.455;AC=3;AF=0.5;AN=6;AO=36;CIGAR=1X;DP=277;DPB=277;DPRA=0;EPP=81.1833;EPPR=517.685;GTI=0;LEN=1;MEANALT=1;MQM=49.25;MQMR=58.0705;NS=3;NUMALT=1;ODDS=0;PAIRED=0.972222;PAIREDR=0.863071;PAO=0;PQA=0;PQR=0;PRO=0;QA=1416;QR=9657;RO=241;RPL=0;RPP=81.1833;RPPR=526.335;RPR=36;RUN=1;SAF=36;SAP=81.1833;SAR=0;SRF=240;SRP=517.685;SRR=1;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:122:105,17:105:4193:17:664:-20.0314,0,-338.812 0/1:80:73,7:73:2928:7:272:-0.575462,0,-235.657 0/1:75:63,12:63:2536:12:480:-20.6072,0,-201.828 dDocent_Contig_5179 11 . T A 445.735 . AB=0.2;ABP=92.9093;AC=3;AF=0.5;AN=6;AO=23;CIGAR=1X;DP=115;DPB=115;DPRA=0;EPP=52.9542;EPPR=202.786;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=929;QR=3695;RO=92;RPL=0;RPP=52.9542;RPPR=202.786;RPR=23;RUN=1;SAF=23;SAP=52.9542;SAR=0;SRF=92;SRP=202.786;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:75:62,13:62:2487:13:529:-25.3796,0,-201.39 0/1:25:20,5:20:804:5:202:-11.0357,0,-65.1505 0/1:15:10,5:10:404:5:198:-13.681,0,-32.204 dDocent_Contig_5180 44 . A G 3747.78 . AB=0.704918;ABP=69.7564;AC=3;AF=0.5;AN=6;AO=129;CIGAR=1X;DP=183;DPB=183;DPRA=0;EPP=283.13;EPPR=120.27;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=4829;QR=2052;RO=54;RPL=0;RPP=283.13;RPPR=120.27;RPR=129;RUN=1;SAF=129;SAP=283.13;SAR=0;SRF=54;SRP=120.27;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:84:22,62:22:827:62:2305:-182.377,0,-49.4599 0/1:48:16,32:16:618:32:1197:-93.5617,0,-41.508 0/1:51:16,35:16:607:35:1327:-104.362,0,-39.6077 dDocent_Contig_5181 65 . T A 9062.31 . AB=0.863636;ABP=205.155;AC=4;AF=0.666667;AN=6;AO=294;CIGAR=1X;DP=329;DPB=329;DPRA=0;EPP=641.423;EPPR=79.0118;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=0.996599;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=11112;QR=1328;RO=35;RPL=294;RPP=641.423;RPPR=79.0118;RPR=0;RUN=1;SAF=294;SAP=641.423;SAR=0;SRF=35;SRP=79.0118;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 1/1:153:11,142:11:423:142:5433:-450.46,-7.64529,0 0/1:55:5,50:5:193:50:1863:-151.324,0,-1.1809 0/1:121:19,102:19:712:102:3816:-307.13,0,-27.9831 dDocent_Contig_5183 22 . C T 39.4371 . AB=0.117647;ABP=24.5973;AC=0;AF=0;AN=6;AO=2;CIGAR=1X3M1X;DP=121;DPB=123.4;DPRA=0.326923;EPP=7.35324;EPPR=228.843;GTI=0;LEN=1;MEANALT=3;MQM=28;MQMR=58.3462;NS=3;NUMALT=4;ODDS=0;PAIRED=0;PAIREDR=0.923077;PAO=0;PQA=0;PQR=0;PRO=0;QA=81;QR=4070;RO=104;RPL=0;RPP=7.35324;RPPR=228.843;RPR=2;RUN=1;SAF=2;SAP=7.35324;SAR=0;SRF=104;SRP=228.843;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|0:60:53,3,0,0,3:53:2078:3,0,0,3:39,0,0,83:0,-14.2041,-179.243,-15.9546,-180.146,-181.956,-15.9546,-180.146,-181.956,-181.956,-10.1628,-174.397,-176.206,-176.206,-175.303 0|0:17:10,0,2,3,2:10:404:0,2,3,2:0,81,109,32:-5.76756,-8.77786,-42.1631,-4.37981,-37.7775,-37.1755,0,-33.4482,-29.0648,-32.5452,-7.04366,-40.4028,-36.0231,-31.6949,-39.8007 0|0:44:41,0,0,0,1:41:1588:0,0,0,1:0,0,0,20:0,-12.3422,-139.676,-12.3422,-139.676,-139.676,-12.3422,-139.676,-139.676,-139.676,-11.0788,-138.45,-138.45,-138.45,-138.149 dDocent_Contig_5184 10 . T G 6294.93 . AB=0.847682;ABP=161.557;AC=4;AF=0.666667;AN=6;AO=195;CIGAR=1X;DP=222;DPB=222;DPRA=0;EPP=426.447;EPPR=61.6401;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=7699;QR=1090;RO=27;RPL=0;RPP=426.447;RPPR=61.6401;RPR=195;RUN=1;SAF=195;SAP=426.447;SAR=0;SRF=27;SRP=61.6401;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:101:15,86:15:610:86:3398:-275.48,0,-24.8321 0/1:50:8,42:8:319:42:1677:-136.106,0,-14.0254 1/1:71:4,67:4:161:67:2624:-221.43,-6.49765,0 dDocent_Contig_5185 10 . G A 243.428 . AB=0.184211;ABP=68.8402;AC=2;AF=0.333333;AN=6;AO=14;CIGAR=1X;DP=92;DPB=92;DPRA=2.375;EPP=33.4109;EPPR=172.385;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=545;QR=3091;RO=78;RPL=0;RPP=33.4109;RPPR=172.385;RPR=14;RUN=1;SAF=14;SAP=33.4109;SAR=0;SRF=78;SRP=172.385;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:54:42,12:42:1663:12:464:-25.8492,0,-133.646 0/0:16:16,0:16:638:0:0:0,-4.81648,-57.7558 0/1:22:20,2:20:790:2:81:-1.06307,0,-64.7955 dDocent_Contig_5186 96 . T G 3946.97 . AB=0.811111;ABP=78.674;AC=4;AF=0.666667;AN=6;AO=143;CIGAR=1X;DP=163;DPB=163;DPRA=0;EPP=313.531;EPPR=46.4397;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=4824;QR=681;RO=20;RPL=143;RPP=313.531;RPPR=46.4397;RPR=0;RUN=1;SAF=143;SAP=313.531;SAR=0;SRF=20;SRP=46.4397;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 1/1:73:3,70:3:104:70:2411:-207.553,-12.2721,0 0/1:58:11,47:11:368:47:1561:-123.317,0,-15.9828 0/1:32:6,26:6:209:26:852:-67.3495,0,-9.51809 dDocent_Contig_5187 92 . G T 692.731 . AB=0.258741;ABP=75.3067;AC=2;AF=0.333333;AN=6;AO=39;CIGAR=1X;DP=186;DPB=186;DPRA=0;EPP=87.6977;EPPR=322.217;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=6.93889e-18;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=1352;QR=5044;RO=147;RPL=39;RPP=87.6977;RPPR=322.217;RPR=0;RUN=1;SAF=39;SAP=87.6977;SAR=0;SRF=147;SRP=322.217;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:77:55,22:55:1902:22:762:-45.7176,0,-148.272 0/0:43:41,2:41:1348:2:72:0,-6.10757,-114.762 0/1:66:51,15:51:1794:15:518:-27.0784,0,-141.874 dDocent_Contig_5188 8 . C A 262.652 . AB=0.254902;ABP=29.6215;AC=3;AF=0.5;AN=6;AO=13;CIGAR=1X2M1X;DP=51;DPB=51;DPRA=0;EPP=31.2394;EPPR=81.1833;GTI=0;LEN=1;MEANALT=1.33333;MQM=59.5385;MQMR=60;NS=3;NUMALT=2;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=509;QR=1388;RO=36;RPL=0;RPP=31.2394;RPPR=81.1833;RPR=13;RUN=1;SAF=13;SAP=31.2394;SAR=0;SRF=36;SRP=81.1833;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|1:23:14,7,2:14:546:7,2:274,81:-18.299,0,-42.7613,-15.8312,-38.1875,-60.1098 0|1:17:13,4,0:13:502:4,0:155,0:-9.20793,0,-40.4082,-13.1213,-41.6123,-54.3468 0|1:11:9,2,0:9:340:2,0:80,0:-4.28046,0,-27.6429,-6.98973,-28.2449,-34.8391 dDocent_Contig_5190 42 . T C 382.699 . AB=0.0535714;ABP=99.951;AC=2;AF=0.333333;AN=6;AO=3;CIGAR=1X1M;DP=97;DPB=97;DPRA=2.33333;EPP=9.52472;EPPR=168.042;GTI=0;LEN=1;MEANALT=2;MQM=60;MQMR=60;NS=3;NUMALT=2;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=121;QR=2910;RO=76;RPL=0;RPP=9.52472;RPPR=168.042;RPR=3;RUN=1;SAF=3;SAP=9.52472;SAR=0;SRF=76;SRP=168.042;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|1:56:41,12,3:41:1566:12,3:460,121:-25.3897,0,-124.838,-27.7537,-118.474,-155.319 0|1:17:11,6,0:11:422:6,0:235,0:-16.403,0,-33.2141,-19.7143,-35.0203,-54.3462 0|0:24:24,0,0:24:922:0,0:0,0:0,-7.22472,-83.2875,-7.22472,-83.2875,-83.2875 dDocent_Contig_5191 15 . T C 2133.36 . AB=0.534351;ABP=4.35297;AC=3;AF=0.5;AN=6;AO=70;CIGAR=1X1M;DP=131;DPB=131;DPRA=0;EPP=155.013;EPPR=113.755;GTI=0;LEN=1;MEANALT=2;MQM=60;MQMR=60;NS=3;NUMALT=2;ODDS=1.38778e-17;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=2840;QR=1992;RO=51;RPL=0;RPP=155.013;RPPR=113.755;RPR=70;RUN=1;SAF=70;SAP=155.013;SAR=0;SRF=51;SRP=113.755;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|1:57:23,3,31:23:902:3,31:122,1258:-96.8228,-93.6832,-166.943,0,-64.0911,-64.8241 0|1:35:11,4,20:11:440:4,20:162,805:-63.029,-52.9816,-88.0195,0,-22.8797,-30.2187 0|1:39:17,3,19:17:650:3,19:121,777:-59.0068,-54.1508,-106.561,0,-43.3301,-47.5879 dDocent_Contig_5192 10 . G C 7977.08 . AB=0.890909;ABP=368.015;AC=3;AF=0.5;AN=6;AO=245;CIGAR=1X;DP=275;DPB=275;DPRA=0;EPP=535.021;EPPR=68.1545;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=9822;QR=1203;RO=30;RPL=0;RPP=535.021;RPPR=68.1545;RPR=245;RUN=1;SAF=245;SAP=535.021;SAR=0;SRF=30;SRP=68.1545;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:140:17,123:17:686:123:4918:-400.365,0,-19.9254 0/1:37:3,34:3:121:34:1362:-111.699,0,-0.142087 0/1:98:10,88:10:396:88:3542:-289.307,0,-6.49564 dDocent_Contig_5193 68 . A T 224.133 . AB=0.137143;ABP=203.146;AC=2;AF=0.333333;AN=6;AO=36;CIGAR=1X;DP=341;DPB=341;DPRA=0;EPP=81.1833;EPPR=665.309;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=1323;QR=11210;RO=305;RPL=36;RPP=81.1833;RPPR=665.309;RPR=0;RUN=1;SAF=36;SAP=81.1833;SAR=0;SRF=305;SRP=665.309;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:166:154,12:154:5695:12:457:0,-8.49269,-471.077 0/1:86:76,10:76:2843:10:384:-9.02727,0,-230.169 0/1:89:75,14:75:2672:14:482:-16.9089,0,-213.925 dDocent_Contig_5194 107 . N T 208.268 . AB=0;ABP=0;AC=4;AF=1;AN=4;AO=6;CIGAR=1X;DP=6;DPB=6;DPRA=0;EPP=16.0391;EPPR=0;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=0;NS=2;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=220;QR=0;RO=0;RPL=0;RPP=16.0391;RPPR=0;RPR=6;RUN=1;SAF=0;SAP=16.0391;SAR=6;SRF=0;SRP=0;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 1/1:5:0,5:0:0:5:183:-16.8268,-1.50515,0 ./.:.:.:.:.:.:.:. 1/1:1:0,1:0:0:1:37:-3.69783,-0.30103,0 dDocent_Contig_5196 9 . C G 76.6757 . AB=0.193548;ABP=28.2974;AC=2;AF=0.333333;AN=6;AO=12;CIGAR=2X;DP=106;DPB=106;DPRA=0;EPP=29.068;EPPR=207.129;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=0.75;PAIREDR=0.957447;PAO=0;PQA=0;PQR=0;PRO=0;QA=450;QR=3631;RO=94;RPL=0;RPP=29.068;RPPR=207.129;RPR=12;RUN=1;SAF=12;SAP=29.068;SAR=0;SRF=94;SRP=207.129;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|0:75:69,6:69:2659:6:230:0,-1.51036,-218.419 0|1:21:18,3:18:696:3:111:-4.03186,0,-56.6489 0|1:10:7,3:7:276:3:109:-7.1572,0,-22.1996 dDocent_Contig_5198 1 . N G 260.823 . AB=0.666667;ABP=3.73412;AC=4;AF=1;AN=4;AO=2;CIGAR=1X4M;DP=8;DPB=8.8;DPRA=0.6;EPP=7.35324;EPPR=0;GTI=0;LEN=1;MEANALT=2;MQM=49;MQMR=0;NS=2;NUMALT=2;ODDS=0;PAIRED=1;PAIREDR=0;PAO=0.5;PQA=18.5;PQR=18.5;PRO=0.5;QA=82;QR=0;RO=0;RPL=0;RPP=7.35324;RPPR=0;RPR=2;RUN=1;SAF=2;SAP=7.35324;SAR=0;SRF=0;SRP=0;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 1|1:3:0,1,2:0:0:1,2:41,82:-10.2207,-7.06655,-6.76552,-3.54508,0,-2.94302 .:.:.:.:.:.:.:. 1|1:5:0,5,0:0:0:5,0:203,0:-17.5363,-1.50515,0,-17.5363,-1.50515,-17.5363 dDocent_Contig_5199 48 . T C 531.234 . AB=0.184713;ABP=138.568;AC=2;AF=0.333333;AN=6;AO=32;CIGAR=1X;DP=225;DPB=225;DPRA=0;EPP=72.4974;EPPR=422.104;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=1253;QR=7406;RO=193;RPL=0;RPP=72.4974;RPPR=422.104;RPR=32;RUN=1;SAF=32;SAP=72.4974;SAR=0;SRF=193;SRP=422.104;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:68:65,3:65:2520:3:106:0,-10.5851,-217.07 0/1:101:86,15:86:3286:15:588:-22.8535,0,-265.423 0/1:56:42,14:42:1600:14:559:-33.7928,0,-127.382 dDocent_Contig_5200 71 . A C 936.216 . AB=0.360656;ABP=23.5859;AC=3;AF=0.5;AN=6;AO=44;CIGAR=1X;DP=122;DPB=122;DPRA=0;EPP=98.5551;EPPR=172.385;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=1499;QR=2765;RO=78;RPL=44;RPP=98.5551;RPPR=172.385;RPR=0;RUN=1;SAF=44;SAP=98.5551;SAR=0;SRF=78;SRP=172.385;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:60:39,21:39:1381:21:727:-47.6881,0,-106.527 0/1:27:15,12:15:543:12:395:-27.732,0,-41.0792 0/1:35:24,11:24:841:11:377:-23.7243,0,-65.473 dDocent_Contig_5201 28 . G A 570.273 . AB=0.176136;ABP=163.354;AC=2;AF=0.333333;AN=6;AO=31;CIGAR=1X;DP=195;DPB=195;DPRA=4.63158;EPP=70.3259;EPPR=359.132;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=1254;QR=6495;RO=164;RPL=0;RPP=70.3259;RPPR=359.132;RPR=31;RUN=1;SAF=31;SAP=70.3259;SAR=0;SRF=164;SRP=359.132;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:108:87,21:87:3457:21:847:-44.0302,0,-278.661 0/0:19:19,0:19:710:0:0:0,-5.71957,-64.209 0/1:68:58,10:58:2328:10:407:-16.52,0,-189.208 dDocent_Contig_5202 72 . A G 232.074 . AB=0.392857;ABP=5.80219;AC=2;AF=0.333333;AN=6;AO=11;CIGAR=1X;DP=34;DPB=34;DPRA=2.33333;EPP=26.8965;EPPR=52.9542;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=1.73472e-18;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=383;QR=731;RO=23;RPL=11;RPP=26.8965;RPPR=52.9542;RPR=0;RUN=1;SAF=11;SAP=26.8965;SAR=0;SRF=23;SRP=52.9542;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:19:10,9:10:312:9:312:-22.6961,0,-22.6663 0/0:6:6,0:6:196:0:0:0,-1.80618,-17.9615 0/1:9:7,2:7:223:2:71:-4.03279,0,-17.6741 dDocent_Contig_5203 13 . C T 1608.7 . AB=0.23511;ABP=197.429;AC=3;AF=0.5;AN=6;AO=75;CIGAR=1X;DP=319;DPB=319;DPRA=0;EPP=165.871;EPPR=532.85;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=2906;QR=9681;RO=244;RPL=0;RPP=165.871;RPPR=532.85;RPR=75;RUN=1;SAF=75;SAP=165.871;SAR=0;SRF=244;SRP=532.85;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:170:147,23:147:5832:23:900:-30.1269,0,-473.511 0/1:96:55,41:55:2178:41:1587:-114.168,0,-167.298 0/1:53:42,11:42:1671:11:419:-22.0978,0,-134.664 dDocent_Contig_5204 107 . N G 357.782 . AB=0;ABP=0;AC=2;AF=1;AN=2;AO=12;CIGAR=1X;DP=12;DPB=12;DPRA=0;EPP=29.068;EPPR=0;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=0;NS=1;NUMALT=1;ODDS=12.9229;PAIRED=1;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=394;QR=0;RO=0;RPL=0;RPP=29.068;RPPR=0;RPR=12;RUN=1;SAF=0;SAP=29.068;SAR=12;SRF=0;SRP=0;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 1/1:12:0,12:0:0:12:394:-35.7782,-3.61236,0 ./.:.:.:.:.:.:.:. ./.:.:.:.:.:.:.:. dDocent_Contig_5205 39 . A T 1887.1 . AB=0.237569;ABP=219.558;AC=3;AF=0.5;AN=6;AO=86;CIGAR=1X;DP=362;DPB=362;DPRA=0;EPP=189.757;EPPR=602.337;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=3358;QR=10945;RO=276;RPL=0;RPP=189.757;RPPR=602.337;RPR=86;RUN=1;SAF=86;SAP=189.757;SAR=0;SRF=276;SRP=602.337;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:193:146,47:146:5782:47:1887:-111.936,0,-462.093 0/1:113:80,33:80:3158:33:1266:-80.1913,0,-250.282 0/1:56:50,6:50:2005:6:205:-1.91831,0,-163.784 dDocent_Contig_5206 28 . A G 1269.1 . AB=0.443396;ABP=5.96022;AC=3;AF=0.5;AN=6;AO=47;CIGAR=1X;DP=106;DPB=106;DPRA=0;EPP=105.07;EPPR=131.127;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=1815;QR=2269;RO=59;RPL=0;RPP=105.07;RPPR=131.127;RPR=47;RUN=1;SAF=47;SAP=105.07;SAR=0;SRF=59;SRP=131.127;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:49:31,18:31:1209:18:712:-49.6579,0,-94.343 0/1:31:16,15:16:617:15:577:-42.9303,0,-46.5343 0/1:26:12,14:12:443:14:526:-39.8448,0,-32.3792 dDocent_Contig_5207 54 . G A 1719.25 . AB=0.61165;ABP=14.1628;AC=3;AF=0.5;AN=6;AO=63;CIGAR=1X;DP=103;DPB=103;DPRA=0;EPP=139.813;EPPR=87.6977;GTI=0;LEN=1;MEANALT=1.33333;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=2305;QR=1526;RO=39;RPL=63;RPP=139.813;RPPR=87.6977;RPR=0;RUN=1;SAF=63;SAP=139.813;SAR=0;SRF=39;SRP=87.6977;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:42:14,28:14:563:28:1036:-80.8897,0,-38.3698 0/1:23:7,16:7:284:16:593:-46.774,0,-19.0103 0/1:38:18,19:18:679:19:676:-49.784,0,-50.0546 dDocent_Contig_5208 19 . G A 4293.29 . AB=0.0487805;ABP=365.54;AC=0;AF=0;AN=6;AO=10;CIGAR=1X1M1X1M;DP=205;DPB=205;DPRA=0;EPP=24.725;EPPR=109.412;GTI=0;LEN=1;MEANALT=3.33333;MQM=60;MQMR=60;NS=3;NUMALT=3;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=401;QR=1905;RO=49;RPL=0;RPP=24.725;RPPR=109.412;RPR=10;RUN=1;SAF=10;SAP=24.725;SAR=0;SRF=49;SRP=109.412;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|0:112:27,4,0,79:27:1044:4,0,79:156,0,3186:-254.492,-249.799,-334.325,-262.62,-335.529,-348.351,0,-72.9044,-85.7266,-61.9452 0|0:46:3,3,10,30:3:117:3,10,30:122,402,1200:-121.454,-112.294,-121.007,-89.2301,-88.7825,-95.8361,-23.5147,-23.0648,0,-24.0985 0|0:47:19,3,4,20:19:744:3,4,20:123,163,786:-58.9056,-54.4714,-114.737,-51.1762,-102.192,-111.141,0,-51.005,-47.7097,-55.1383 dDocent_Contig_5210 9 . T C 1683.84 . AB=0.0783133;ABP=259.401;AC=4;AF=0.666667;AN=6;AO=13;CIGAR=2X3M1I2M1X8M3D1M2I2M;DP=186;DPB=206.727;DPRA=0;EPP=31.2394;EPPR=126.784;GTI=0;LEN=1;MEANALT=7;MQM=60;MQMR=60;NS=3;NUMALT=5;ODDS=0;PAIRED=1;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=488;QR=2208;RO=57;RPL=0;RPP=31.2394;RPPR=126.784;RPR=13;RUN=1;SAF=13;SAP=31.2394;SAR=0;SRF=57;SRP=126.784;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|1:122:41,3,3,31,26,12:41:1604:3,3,31,26,12:119,109,1208,981,448:-86.9572,-89.5024,-220.487,-90.3992,-212.49,-221.384,0,-122.098,-122.995,-122.563,-18.9033,-140.997,-141.894,-51.5007,-142.967,-62.6228,-184.714,-185.611,-95.219,-114.118,-190.899 1|1:20:2,3,0,10,4,0:2:74:3,0,10,4,0:116,0,382,150,0:-36.9972,-28.0676,-33.2191,-37.5992,-34.1222,-43.6534,-6.24154,-2.75787,-12.2991,-9.28877,-25.3111,-21.8329,-31.3655,0,-30.1613,-37.5992,-34.1222,-43.6534,-12.2991,-31.3655,-43.6534 0|1:44:14,0,3,17,7,1:14:530:0,3,17,7,1:0,120,659,260,40:-49.9523,-54.1667,-97.6147,-44.2778,-87.7273,-86.8242,0,-43.4645,-33.5742,-38.347,-32.889,-76.3383,-66.4504,-22.1841,-74.231,-50.8705,-94.3189,-84.4314,-40.1679,-73.0424,-94.0179 dDocent_Contig_5211 11 . T C 1040.69 . AB=0.167147;ABP=336.935;AC=3;AF=0.5;AN=6;AO=58;CIGAR=1X1M;DP=347;DPB=347;DPRA=0;EPP=128.956;EPPR=576.279;GTI=0;LEN=1;MEANALT=2.66667;MQM=60;MQMR=60;NS=3;NUMALT=2;ODDS=0;PAIRED=1;PAIREDR=0.992424;PAO=0;PQA=0;PQR=0;PRO=0;QA=2297;QR=10347;RO=264;RPL=0;RPP=128.956;RPPR=576.279;RPR=58;RUN=1;SAF=58;SAP=128.956;SAR=0;SRF=264;SRP=576.279;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|1:175:129,11,31:129:5089:11,31:439,1220:-61.514,-64.1906,-479.568,0,-382.529,-409.353 0|1:93:74,1,18:74:2881:1,18:38,715:-36.6029,-55.7635,-292.221,0,-233.658,-231.356 0|1:79:61,8,9:61:2377:8,9:321,362:-11.4754,-4.24809,-197.159,0,-169.733,-192.619 dDocent_Contig_5212 52 . G C 415.941 . AB=0.27027;ABP=36.9322;AC=3;AF=0.5;AN=6;AO=20;CIGAR=1X;DP=74;DPB=74;DPRA=0;EPP=46.4397;EPPR=120.27;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=3.46945e-18;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=735;QR=1979;RO=54;RPL=20;RPP=46.4397;RPPR=120.27;RPR=0;RUN=1;SAF=20;SAP=46.4397;SAR=0;SRF=54;SRP=120.27;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:43:26,17:26:956:17:619:-43.0886,0,-73.4011 0/1:22:20,2:20:736:2:77:-0.686482,0,-59.926 0/1:9:8,1:8:287:1:39:-1.18729,0,-23.4612 dDocent_Contig_5214 13 . C A 699.804 . AB=0.217949;ABP=110.804;AC=3;AF=0.5;AN=6;AO=34;CIGAR=1X;DP=156;DPB=156;DPRA=0;EPP=76.8404;EPPR=267.93;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=1349;QR=4898;RO=122;RPL=0;RPP=76.8404;RPPR=267.93;RPR=34;RUN=1;SAF=34;SAP=76.8404;SAR=0;SRF=122;SRP=267.93;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:79:65,14:65:2620:14:548:-25.8789,0,-212.134 0/1:38:24,14:24:961:14:560:-39.2988,0,-75.3504 0/1:39:33,6:33:1317:6:241:-10.3256,0,-107.046 dDocent_Contig_5215 50 . A T 956.741 . AB=0.0714286;ABP=47.6806;AC=0;AF=0;AN=6;AO=2;CIGAR=1M1X4M;DP=86;DPB=58.6667;DPRA=0;EPP=7.35324;EPPR=94.2121;GTI=0;LEN=1;MEANALT=2;MQM=60;MQMR=60;NS=3;NUMALT=2;ODDS=0;PAIRED=0;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=80;QR=1596;RO=42;RPL=2;RPP=7.35324;RPPR=94.2121;RPR=0;RUN=1;SAF=2;SAP=7.35324;SAR=0;SRF=42;SRP=94.2121;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|0:31:17,13,0:17:656:13,0:407,0:-27.5186,0,-49.9657,-32.6361,-53.8791,-86.5468 0|0:27:18,9,0:18:683:9,0:320,0:-21.0118,0,-53.6722,-26.4304,-56.3815,-82.4485 0|0:28:7,19,2:7:257:19,2:673,80:-52.6666,0,-15.2637,-48.1795,-14.386,-68.5896 dDocent_Contig_5216 1 . N G 262.449 . AB=0;ABP=0;AC=4;AF=1;AN=4;AO=10;CIGAR=1X2M1X3M1X2M1X1M1X2M1X;DP=10;DPB=19.125;DPRA=0;EPP=24.725;EPPR=0;GTI=0;LEN=1;MEANALT=1;MQM=31;MQMR=0;NS=2;NUMALT=1;ODDS=0;PAIRED=0;PAIREDR=0;PAO=15;PQA=578;PQR=0;PRO=0;QA=334;QR=0;RO=0;RPL=0;RPP=24.725;RPPR=0;RPR=10;RUN=1;SAF=0;SAP=24.725;SAR=10;SRF=0;SRP=0;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 1|1:7:0,7:0:0:7:234:-18.1624,-2.10721,0 .:.:.:.:.:.:.:. 1|1:3:0,3:0:0:3:100:-7.78126,-0.90309,0 dDocent_Contig_5217 8 . C A 169.732 . AB=0.285714;ABP=14.1779;AC=2;AF=0.333333;AN=6;AO=9;CIGAR=1X2M1X;DP=45;DPB=45;DPRA=0;EPP=22.5536;EPPR=81.1833;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=347;QR=1391;RO=36;RPL=0;RPP=22.5536;RPPR=81.1833;RPR=9;RUN=1;SAF=9;SAP=22.5536;SAR=0;SRF=36;SRP=81.1833;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|1:19:13,6:13:503:6:235:-15.8015,0,-39.8978 0|0:17:16,1:16:618:1:34:0,-1.7186,-52.5579 0|1:9:7,2:7:270:2:78:-4.6942,0,-21.9564 dDocent_Contig_5218 125 . C A 2150.36 . AB=0.719101;ABP=40.1205;AC=4;AF=0.666667;AN=6;AO=81;CIGAR=1X;DP=106;DPB=106;DPRA=0;EPP=178.9;EPPR=57.2971;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=2716;QR=860;RO=25;RPL=0;RPP=178.9;RPPR=57.2971;RPR=81;RUN=1;SAF=0;SAP=178.9;SAR=81;SRF=0;SRP=57.2971;SRR=25;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:66:16,50:16:546:50:1694:-132.878,0,-29.5953 1/1:17:0,17:0:0:17:580:-52.5229,-5.11751,0 0/1:23:9,14:9:314:14:442:-33.1582,0,-21.6742 dDocent_Contig_5220 27 . G A 295.961 . AB=0.230769;ABP=43.9342;AC=3;AF=0.5;AN=6;AO=15;CIGAR=1X;DP=65;DPB=65;DPRA=0;EPP=35.5824;EPPR=111.584;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=595;QR=1929;RO=50;RPL=0;RPP=35.5824;RPPR=111.584;RPR=15;RUN=1;SAF=15;SAP=35.5824;SAR=0;SRF=50;SRP=111.584;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:28:20,8:20:791:8:315:-20.2866,0,-63.0842 0/1:21:18,3:18:691:3:119:-4.77338,0,-56.1881 0/1:16:12,4:12:447:4:161:-10.0588,0,-35.7497 dDocent_Contig_5221 66 . C T 1171.54 . AB=0.142857;ABP=165.871;AC=4;AF=0.666667;AN=6;AO=21;CIGAR=1X2M2X1M1X;DP=147;DPB=147;DPRA=0;EPP=48.6112;EPPR=172.385;GTI=0;LEN=1;MEANALT=2.66667;MQM=60;MQMR=60;NS=3;NUMALT=2;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=742;QR=2681;RO=78;RPL=21;RPP=48.6112;RPPR=172.385;RPR=0;RUN=1;SAF=21;SAP=48.6112;SAR=0;SRF=78;SRP=172.385;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|1:65:45,14,5:45:1585:14,5:484,174:-25.8103,0,-124.869,-25.2036,-114.935,-152.757 1|1:19:2,9,7:2:72:9,7:324,253:-40.6121,-14.7792,-17.9447,-20.5625,0,-24.3302 0|1:63:31,23,9:31:1024:23,9:806,315:-56.2544,0,-75.8576,-39.9572,-57.1476,-120.033 dDocent_Contig_5222 32 . T C 606.421 . AB=0.4;ABP=8.22183;AC=3;AF=0.5;AN=6;AO=24;CIGAR=1X;DP=60;DPB=60;DPRA=0;EPP=55.1256;EPPR=81.1833;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=924;QR=1430;RO=36;RPL=0;RPP=55.1256;RPPR=81.1833;RPR=24;RUN=1;SAF=24;SAP=55.1256;SAR=0;SRF=36;SRP=81.1833;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:22:10,12:10:405:12:471:-36.1143,0,-30.1874 0/1:17:11,6:11:413:6:214:-14.4871,0,-32.3906 0/1:21:15,6:15:612:6:239:-15.5635,0,-49.0955 dDocent_Contig_5223 28 . T G 5345.22 . AB=0.785714;ABP=161.838;AC=3;AF=0.5;AN=6;AO=176;CIGAR=1M2D1M1X3M1X;DP=224;DPB=184.667;DPRA=0;EPP=385.189;EPPR=105.07;GTI=0;LEN=1;MEANALT=1.33333;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=6743;QR=1822;RO=47;RPL=0;RPP=385.189;RPPR=105.07;RPR=176;RUN=1;SAF=176;SAP=385.189;SAR=0;SRF=47;SRP=105.07;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|1:124:23,100:23:886:100:3830:-307.42,0,-42.6832 0|1:39:4,35:4:158:35:1336:-108.784,0,-2.86031 0|1:61:20,41:20:778:41:1577:-123.822,0,-51.9796 dDocent_Contig_5224 68 . G C 79.9351 . AB=0.166667;ABP=37.7539;AC=2;AF=0.333333;AN=6;AO=6;CIGAR=1X;DP=52;DPB=52;DPRA=1.125;EPP=16.0391;EPPR=102.898;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=236;QR=1760;RO=46;RPL=6;RPP=16.0391;RPPR=102.898;RPR=0;RUN=1;SAF=6;SAP=16.0391;SAR=0;SRF=46;SRP=102.898;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:16:16,0:16:605:0:0:0,-4.81648,-54.7747 0/1:16:12,4:12:464:4:158:-9.78379,0,-37.2866 0/1:20:18,2:18:691:2:78:-1.38287,0,-56.5031 dDocent_Contig_5225 161 . C A 159.333 . AB=0.164384;ABP=74.4309;AC=3;AF=0.5;AN=6;AO=12;CIGAR=1X;DP=73;DPB=73;DPRA=0;EPP=29.068;EPPR=135.47;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=470;QR=2437;RO=61;RPL=12;RPP=29.068;RPPR=135.47;RPR=0;RUN=1;SAF=0;SAP=29.068;SAR=12;SRF=0;SRP=135.47;SRR=61;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:43:37,6:37:1476:6:229:-8.02238,0,-120.14 0/1:10:8,2:8:322:2:79:-4.48694,0,-26.3382 0/1:20:16,4:16:639:4:162:-8.94636,0,-51.824 dDocent_Contig_5226 21 . C A 5944.82 . AB=0.789256;ABP=178.882;AC=3;AF=0.5;AN=6;AO=191;CIGAR=1X;DP=242;DPB=242;DPRA=0;EPP=417.762;EPPR=113.755;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=1.38778e-17;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=7471;QR=2021;RO=51;RPL=0;RPP=417.762;RPPR=113.755;RPR=191;RUN=1;SAF=191;SAP=417.762;SAR=0;SRF=51;SRP=113.755;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:131:21,110:21:839:110:4304:-347.908,0,-36.3908 0/1:57:16,41:16:642:41:1579:-125.189,0,-40.9559 0/1:54:14,40:14:540:40:1588:-126.907,0,-32.6838 dDocent_Contig_5227 77 . A C 1886.77 . AB=0.0645161;ABP=54.0749;AC=0;AF=0;AN=6;AO=2;CIGAR=1X1M1X;DP=118;DPB=118;DPRA=0;EPP=7.35324;EPPR=94.2121;GTI=0;LEN=1;MEANALT=2;MQM=60;MQMR=60;NS=3;NUMALT=2;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=27;QR=1433;RO=42;RPL=2;RPP=7.35324;RPPR=94.2121;RPR=0;RUN=1;SAF=2;SAP=7.35324;SAR=0;SRF=42;SRP=94.2121;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|0:57:24,0,33:24:824:0,33:0,1134:-85.2087,-92.4334,-159.342,0,-67.2522,-57.3182 0|0:30:5,0,25:5:161:0,25:0,851:-67.8731,-69.3782,-82.3556,0,-13.3023,-5.77658 0|0:31:13,2,16:13:448:2,16:27,552:-41.1184,-43.2272,-79.0172,0,-34.7739,-31.7574 dDocent_Contig_5228 8 . C T 155.26 . AB=0.291667;ABP=12.0581;AC=1;AF=0.166667;AN=6;AO=11;CIGAR=1X;DP=103;DPB=103;DPRA=4.65;EPP=26.8965;EPPR=198.443;GTI=0;LEN=1;MEANALT=1.5;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=6.93889e-18;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=425;QR=3477;RO=90;RPL=0;RPP=26.8965;RPPR=198.443;RPR=11;RUN=1;SAF=11;SAP=26.8965;SAR=0;SRF=90;SRP=198.443;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:69:63,4:63:2436:4:156:0,-6.13807,-205.027 0/0:10:10,0:10:386:0:0:0,-3.0103,-35.0966 0/1:24:17,7:17:655:7:269:-17.3499,0,-52.062 dDocent_Contig_5229 8 . T C 1003.99 . AB=0.211111;ABP=68.251;AC=2;AF=0.333333;AN=6;AO=19;CIGAR=1X2M1X;DP=90;DPB=90;DPRA=0;EPP=44.2683;EPPR=92.0407;GTI=0;LEN=1;MEANALT=2.33333;MQM=60;MQMR=60;NS=3;NUMALT=2;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=746;QR=1607;RO=41;RPL=0;RPP=44.2683;RPPR=92.0407;RPR=19;RUN=1;SAF=19;SAP=44.2683;SAR=0;SRF=41;SRP=92.0407;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|0:58:30,6,22:30:1186:6,22:235,880:-63.4595,-53.1681,-148.963,0,-78.2832,-90.984 1|0:11:2,5,3:2:78:5,3:197,123:-19.355,-3.7555,-8.65699,-9.79935,0,-15.307 0|1:21:9,8,4:9:343:8,4:314,162:-23.1077,0,-25.7093,-12.4548,-14.7521,-39.3786 dDocent_Contig_5230 67 . T C 47.1234 . AB=0.307692;ABP=7.18621;AC=1;AF=0.166667;AN=6;AO=4;CIGAR=1X;DP=74;DPB=74;DPRA=0.42623;EPP=11.6962;EPPR=155.013;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=113;QR=2322;RO=70;RPL=4;RPP=11.6962;RPPR=155.013;RPR=0;RUN=1;SAF=4;SAP=11.6962;SAR=0;SRF=70;SRP=155.013;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:41:41,0:41:1338:0:0:0,-12.3422,-120.712 0/0:20:20,0:20:702:0:0:0,-6.0206,-63.5038 0/1:13:9,4:9:282:4:113:-6.53624,0,-21.7735 dDocent_Contig_5231 9 . C T 54.8586 . AB=0.173913;ABP=24.253;AC=1;AF=0.166667;AN=6;AO=5;CIGAR=1X;DP=70;DPB=70;DPRA=2;EPP=13.8677;EPPR=144.156;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=0;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=193;QR=2509;RO=65;RPL=0;RPP=13.8677;RPPR=144.156;RPR=5;RUN=1;SAF=5;SAP=13.8677;SAR=0;SRF=65;SRP=144.156;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:33:32,1:32:1241:1:39:0,-6.03743,-108.086 0/1:23:19,4:19:724:4:154:-7.30977,0,-58.5665 0/0:14:14,0:14:544:0:0:0,-4.21442,-49.3061 dDocent_Contig_5232 107 . N A 301.003 . AB=0;ABP=0;AC=6;AF=1;AN=6;AO=17;CIGAR=1X;DP=17;DPB=17;DPRA=0;EPP=39.9253;EPPR=0;GTI=0;LEN=1;MEANALT=1;MQM=23.2353;MQMR=0;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=426;QR=0;RO=0;RPL=0;RPP=39.9253;RPPR=0;RPR=17;RUN=1;SAF=0;SAP=39.9253;SAR=17;SRF=0;SRP=0;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 1/1:10:0,10:0:0:10:252:-16.9538,-3.0103,0 1/1:5:0,5:0:0:5:117:-8.81928,-1.50515,0 1/1:2:0,2:0:0:2:57:-3.84965,-0.60206,0 dDocent_Contig_5233 12 . G A 30.446 . AB=0.0923077;ABP=190.692;AC=1;AF=0.166667;AN=6;AO=12;CIGAR=1X;DP=496;DPB=496;DPRA=0.710383;EPP=29.068;EPPR=1054;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=485;QR=19228;RO=484;RPL=0;RPP=29.068;RPPR=1054;RPR=12;RUN=1;SAF=12;SAP=29.068;SAR=0;SRF=484;SRP=1054;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:226:226,0:226:9012:0:0:0,-68.0328,-810.547 0/0:140:140,0:140:5541:0:0:0,-42.1442,-498.53 0/1:130:118,12:118:4675:12:485:-4.86812,0,-381.531 dDocent_Contig_5234 76 . G C 555.86 . AB=0.303371;ABP=32.8985;AC=3;AF=0.5;AN=6;AO=27;CIGAR=1X;DP=89;DPB=89;DPRA=0;EPP=61.6401;EPPR=137.642;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=965;QR=2220;RO=62;RPL=27;RPP=61.6401;RPPR=137.642;RPR=0;RUN=1;SAF=27;SAP=61.6401;SAR=0;SRF=62;SRP=137.642;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:50:31,19:31:1135:19:676:-46.1129,0,-87.4072 0/1:13:11,2:11:381:2:74:-3.11249,0,-30.7055 0/1:26:20,6:20:704:6:215:-11.8724,0,-55.8558 dDocent_Contig_5235 22 . T A 10716.1 . AB=0.607143;ABP=75.5995;AC=6;AF=1;AN=6;AO=442;CIGAR=1X10M;DP=728;DPB=720.818;DPRA=0;EPP=591.155;EPPR=59.4686;GTI=0;LEN=1;MEANALT=11;MQM=33.6041;MQMR=57.4615;NS=3;NUMALT=5;ODDS=0;PAIRED=0.608597;PAIREDR=0.230769;PAO=0;PQA=0;PQR=0;PRO=0;QA=12702;QR=1020;RO=26;RPL=0;RPP=962.801;RPPR=59.4686;RPR=442;RUN=1;SAF=394;SAP=591.155;SAR=48;SRF=26;SRP=59.4686;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 1|1:340:17,38,21,11,209,23:17:669:38,21,11,209,23:1422,676,416,5758,911:-466.596,-360.823,-404.298,-422.379,-366.402,-470.971,-438.795,-382.818,-444.374,-490.397,-55.9689,0,-61.5603,-77.9657,-47.9669,-396.727,-340.75,-402.307,-418.723,-35.8961,-444.718 1|1:202:7,26,36,7,113,0:7:276:26,36,7,113,0:975,1084,119,3448,0:-310.918,-239.238,-253.81,-234.938,-183.549,-246.499,-306.013,-254.625,-250.326,-326.304,-55.6713,-4.27492,0,-71.0693,-44.0566,-313.025,-261.636,-257.336,-328.411,-78.073,-335.422 1|1:186:2,18,26,11,120,0:2:75:18,26,11,120,0:655,665,246,3496,0:-299.622,-249.717,-250.443,-253.832,-209.468,-252.15,-283.557,-239.193,-243.31,-286.39,-44.3789,0,-4.15567,-33.8681,-14.4017,-300.224,-255.861,-259.976,-289.701,-50.5253,-306.369 dDocent_Contig_5236 1 . N G 258.692 . AB=0;ABP=0;AC=4;AF=1;AN=4;AO=9;CIGAR=1X;DP=9;DPB=9;DPRA=0;EPP=9.04217;EPPR=0;GTI=0;LEN=1;MEANALT=1;MQM=40.2222;MQMR=0;NS=2;NUMALT=1;ODDS=0;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=303;QR=0;RO=0;RPL=0;RPP=22.5536;RPPR=0;RPR=9;RUN=1;SAF=2;SAP=9.04217;SAR=7;SRF=0;SRP=0;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 1/1:4:0,4:0:0:4:115:-10.0326,-1.20412,0 ./.:.:.:.:.:.:.:. 1/1:5:0,5:0:0:5:188:-15.5354,-1.50515,0 dDocent_Contig_5242 31 . G A 57225.5 . AB=0;ABP=0;AC=6;AF=1;AN=6;AO=1760;CIGAR=1X;DP=1814;DPB=1814;DPRA=0;EPP=3256.98;EPPR=120.27;GTI=0;LEN=1;MEANALT=1;MQM=54.2773;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=0.79375;PAIREDR=0.981481;PAO=0;PQA=0;PQR=0;PRO=0;QA=69561;QR=2133;RO=54;RPL=0;RPP=3824.8;RPPR=120.27;RPR=1760;RUN=1;SAF=1692;SAP=3256.98;SAR=68;SRF=54;SRP=120.27;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 1/1:950:32,918:32:1291:918:36178:-2954.93,-169.524,0 1/1:440:11,429:11:437:429:17022:-1395.47,-92.7733,0 1/1:424:11,413:11:405:413:16361:-1371.68,-90.8611,0 dDocent_Contig_5244 107 . N A 28661.6 . AB=0;ABP=0;AC=6;AF=1;AN=6;AO=931;CIGAR=1X3M;DP=959;DPB=959;DPRA=0;EPP=2024.65;EPPR=0;GTI=0;LEN=1;MEANALT=2.66667;MQM=46.8174;MQMR=0;NS=3;NUMALT=2;ODDS=0;PAIRED=0.992481;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=32506;QR=0;RO=0;RPL=0;RPP=2024.65;RPPR=0;RPR=931;RUN=1;SAF=0;SAP=2024.65;SAR=931;SRF=0;SRP=0;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 1|1:597:0,6,580:0:0:6,580:198,20219:-1781.96,-1766.42,-1764.61,-174.597,-159.073,0 1|1:77:0,7,70:0:0:7,70:244,2445:-215.506,-196.385,-194.278,-21.0721,-1.61412,0 1|1:285:0,0,281:0:0:0,281:0,9842:-868.223,-868.223,-868.223,-84.5894,-84.5894,0 dDocent_Contig_5245 8 . C T 277.828 . AB=0.12844;ABP=264.424;AC=3;AF=0.5;AN=6;AO=28;CIGAR=1X;DP=218;DPB=218;DPRA=0;EPP=63.8115;EPPR=406.95;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=59.6526;NS=3;NUMALT=1;ODDS=1.38778e-17;PAIRED=1;PAIREDR=0.936842;PAO=0;PQA=0;PQR=0;PRO=0;QA=1083;QR=7244;RO=190;RPL=0;RPP=63.8115;RPPR=415.59;RPR=28;RUN=1;SAF=28;SAP=63.8115;SAR=0;SRF=189;SRP=406.95;SRR=1;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:88:80,8:80:3046:8:309:-1.68233,0,-247.737 0/1:70:57,13:57:2173:13:503:-24.5466,0,-174.718 0/1:60:53,7:53:2025:7:271:-6.69451,0,-164.41 dDocent_Contig_5246 7 . T C 109.76 . AB=0.194444;ABP=32.2045;AC=1;AF=0.166667;AN=6;AO=7;CIGAR=1X;DP=114;DPB=114;DPRA=0.923077;EPP=18.2106;EPPR=235.358;GTI=0;LEN=1;MEANALT=1;MQM=47.2857;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=0.142857;PAIREDR=0.121495;PAO=0;PQA=0;PQR=0;PRO=0;QA=263;QR=4094;RO=107;RPL=0;RPP=18.2106;RPPR=235.358;RPR=7;RUN=1;SAF=7;SAP=18.2106;SAR=0;SRF=107;SRP=235.358;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:56:56,0:56:2158:0:0:0,-16.8577,-194.446 0/0:22:22,0:22:837:0:0:0,-6.62266,-75.653 0/1:36:29,7:29:1099:7:263:-12.7999,0,-88.374 dDocent_Contig_5247 17 . G A 97.102 . AB=0.145833;ABP=55.3066;AC=2;AF=0.333333;AN=6;AO=8;CIGAR=1X;DP=70;DPB=70;DPRA=0;EPP=20.3821;EPPR=137.642;GTI=0;LEN=1;MEANALT=1;MQM=58.625;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=316;QR=2475;RO=62;RPL=0;RPP=20.3821;RPPR=137.642;RPR=8;RUN=1;SAF=8;SAP=20.3821;SAR=0;SRF=62;SRP=137.642;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:36:30,6:30:1209:6:241:-11.2296,0,-98.2454 0/1:12:11,1:11:434:1:40:-0.383319,0,-35.8009 0/0:22:21,1:21:832:1:35:0,-3.13961,-71.709 dDocent_Contig_5249 37 . C G 148.665 . AB=0.204082;ABP=40.2799;AC=3;AF=0.5;AN=6;AO=10;CIGAR=1X;DP=49;DPB=49;DPRA=0;EPP=24.725;EPPR=87.6977;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=378;QR=1544;RO=39;RPL=0;RPP=24.725;RPPR=87.6977;RPR=10;RUN=1;SAF=10;SAP=24.725;SAR=0;SRF=39;SRP=87.6977;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:23:20,3:20:800:3:120:-4.26362,0,-65.3925 0/1:14:9,5:9:342:5:180:-12.3317,0,-26.9175 0/1:12:10,2:10:402:2:78:-3.79094,0,-32.9277 dDocent_Contig_5251 9 . T C 41048.5 . AB=0.0239398;ABP=2880.97;AC=3;AF=0.5;AN=6;AO=35;CIGAR=1X4M;DP=1462;DPB=1460.8;DPRA=0;EPP=79.0118;EPPR=100.727;GTI=0;LEN=1;MEANALT=7;MQM=57.2286;MQMR=60;NS=3;NUMALT=3;ODDS=0;PAIRED=0.342857;PAIREDR=0.0444444;PAO=0;PQA=0;PQR=0;PRO=0;QA=1325;QR=1768;RO=45;RPL=0;RPP=79.0118;RPPR=100.727;RPR=35;RUN=1;SAF=35;SAP=79.0118;SAR=0;SRF=45;SRP=100.727;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 1|0:577:13,214,6,330:13:510:214,6,330:8310,225,13128:-1695.62,-1032.09,-1009.61,-1681.11,-1055.61,-1721.24,-625.501,0,-649.019,-568.104 1|0:638:20,262,16,329:20:786:262,16,329:10128,604,13009:-1771.52,-1001.89,-987.672,-1728.05,-1017.05,-1787.88,-710.997,0,-726.16,-676.612 1|0:247:12,92,13,122:12:472:92,13,122:3598,496,4862:-643.238,-358.969,-370.1,-606.779,-357.723,-641.691,-249.063,0,-247.818,-251.165 dDocent_Contig_5252 14 . T C 527.942 . AB=0.255556;ABP=49.7211;AC=2;AF=0.333333;AN=6;AO=33;CIGAR=1X;DP=218;DPB=218;DPRA=0;EPP=74.6689;EPPR=404.733;GTI=0;LEN=1;MEANALT=1;MQM=59.8182;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=0;PAIREDR=0.47027;PAO=0;PQA=0;PQR=0;PRO=0;QA=1322;QR=7390;RO=185;RPL=0;RPP=74.6689;RPPR=404.733;RPR=33;RUN=1;SAF=33;SAP=74.6689;SAR=0;SRF=185;SRP=404.733;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:128:118,10:118:4728:10:403:0,-1.90713,-388.798 0/1:37:27,10:27:1093:10:402:-25.4009,0,-87.5176 0/1:53:40,13:40:1569:13:517:-30.9162,0,-125.484 dDocent_Contig_5253 17 . G A 325.744 . AB=0.235294;ABP=44.396;AC=3;AF=0.5;AN=6;AO=16;CIGAR=1X;DP=68;DPB=68;DPRA=0;EPP=37.7539;EPPR=115.927;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=638;QR=2039;RO=52;RPL=0;RPP=37.7539;RPPR=115.927;RPR=16;RUN=1;SAF=16;SAP=37.7539;SAR=0;SRF=52;SRP=115.927;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:26:23,3:23:924:3:122:-3.54571,0,-75.6362 0/1:18:8,10:8:299:10:393:-30.3066,0,-21.8422 0/1:24:21,3:21:816:3:123:-4.24007,0,-66.5225 dDocent_Contig_5254 8 . C T 159.894 . AB=0.243902;ABP=26.3669;AC=1;AF=0.166667;AN=6;AO=11;CIGAR=1X;DP=72;DPB=72;DPRA=2.26923;EPP=26.8965;EPPR=62.8504;GTI=0;LEN=1;MEANALT=1;MQM=34;MQMR=59.623;NS=3;NUMALT=1;ODDS=0;PAIRED=0;PAIREDR=0.836066;PAO=0;PQA=0;PQR=0;PRO=0;QA=429;QR=2301;RO=61;RPL=0;RPP=26.8965;RPPR=135.47;RPR=11;RUN=1;SAF=11;SAP=26.8965;SAR=0;SRF=51;SRP=62.8504;SRR=10;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:41:31,10:31:1190:10:390:-17.5122,0,-95.0548 0/0:18:17,1:17:620:1:39:0,-2.13783,-52.8451 0/0:13:13,0:13:491:0:0:0,-3.91339,-44.4889 dDocent_Contig_5255 25 . G A 1898.22 . AB=0.133333;ABP=90.593;AC=3;AF=0.5;AN=6;AO=10;CIGAR=1X1M1X9M1X;DP=103;DPB=103;DPRA=0;EPP=24.725;EPPR=50.7827;GTI=0;LEN=1;MEANALT=3.5;MQM=60;MQMR=60;NS=3;NUMALT=3;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=396;QR=869;RO=22;RPL=0;RPP=24.725;RPPR=50.7827;RPR=10;RUN=1;SAF=10;SAP=24.725;SAR=0;SRF=22;SRP=50.7827;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|1:57:11,30,8,4:11:437:30,8,4:1182,316,161:-93.9308,0,-26.9497,-71.2389,-9.97724,-104.81,-83.9719,-22.7098,-93.948,-118.747 0|1:18:3,13,2,0:3:119:13,2,0:500,80,0:-40.1318,0,-5.88067,-34.4427,-3.20257,-43.639,-41.0349,-9.79406,-44.241,-50.8326 0|1:28:8,20,0,0:8:313:20,0,0:771,0,0:-61.2822,0,-20.1059,-63.6905,-26.1265,-89.4277,-63.6905,-26.1265,-89.4277,-89.4277 dDocent_Contig_5256 23 . T C 898.136 . AB=0.196507;ABP=186.22;AC=3;AF=0.5;AN=6;AO=45;CIGAR=1X;DP=229;DPB=229;DPRA=0;EPP=100.727;EPPR=402.561;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=1814;QR=7299;RO=184;RPL=0;RPP=100.727;RPPR=402.561;RPR=45;RUN=1;SAF=45;SAP=100.727;SAR=0;SRF=184;SRP=402.561;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:130:105,25:105:4165:25:1003:-51.4274,0,-335.684 0/1:35:29,6:29:1140:6:244:-11.8028,0,-92.3463 0/1:64:50,14:50:1994:14:567:-32.1064,0,-160.381 dDocent_Contig_5257 67 . G A 847.909 . AB=0.295082;ABP=47.5077;AC=3;AF=0.5;AN=6;AO=36;CIGAR=1X;DP=122;DPB=122;DPRA=0;EPP=81.1833;EPPR=189.757;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=1400;QR=3331;RO=86;RPL=36;RPP=81.1833;RPPR=189.757;RPR=0;RUN=1;SAF=36;SAP=81.1833;SAR=0;SRF=86;SRP=189.757;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:52:40,12:40:1573:12:478:-27.7156,0,-126.156 0/1:22:11,11:11:413:11:431:-32.5212,0,-30.8904 0/1:48:35,13:35:1345:13:491:-30.077,0,-106.866 dDocent_Contig_5258 125 . T A 134.549 . AB=0.172414;ABP=57.0725;AC=2;AF=0.333333;AN=6;AO=10;CIGAR=1X;DP=66;DPB=66;DPRA=3.625;EPP=24.725;EPPR=124.613;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=355;QR=1969;RO=56;RPL=0;RPP=24.725;RPPR=124.613;RPR=10;RUN=1;SAF=0;SAP=24.725;SAR=10;SRF=0;SRP=124.613;SRR=56;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:36:28,8:28:983:8:283:-14.9754,0,-77.9461 0/0:8:8,0:8:286:0:0:0,-2.40824,-26.0856 0/1:22:20,2:20:700:2:72:-0.214063,0,-56.7007 dDocent_Contig_5259 22 . T A 1487.87 . AB=0.0714286;ABP=47.6806;AC=0;AF=0;AN=6;AO=2;CIGAR=2X1M1X2M1X2M;DP=82;DPB=82;DPRA=0;EPP=7.35324;EPPR=55.1256;GTI=0;LEN=1;MEANALT=3;MQM=9;MQMR=60;NS=3;NUMALT=4;ODDS=0;PAIRED=0;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=18;QR=927;RO=24;RPL=0;RPP=7.35324;RPPR=55.1256;RPR=2;RUN=1;SAF=2;SAP=7.35324;SAR=0;SRF=24;SRP=55.1256;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|0:28:4,18,0,0,6:4:159:18,0,0,6:724,0,0,241:-65.0765,-6.77208,-14.443,-66.2806,-19.8615,-79.3712,-66.2806,-19.8615,-79.3712,-79.3712,-46.4214,0,-59.5119,-59.5119,-57.7057 0|0:26:13,0,0,1,12:13:499:0,0,1,12:0,0,40,477:-35.3696,-39.283,-80.2346,-39.283,-80.2346,-80.2346,-36.1159,-77.0668,-77.0668,-76.7658,0,-40.9562,-40.9562,-37.7881,-37.3438 0|0:28:7,0,2,2,17:7:269:0,2,2,17:0,18,80,678:-53.8634,-55.9706,-78.0556,-55.4757,-77.5524,-76.9503,-49.3936,-71.4798,-70.9784,-70.8778,0,-22.1781,-21.7102,-15.5888,-17.0606 dDocent_Contig_5260 9 . G A 10971.7 . AB=0.836735;ABP=99.53;AC=5;AF=0.833333;AN=6;AO=349;CIGAR=1X;DP=382;DPB=382;DPRA=0;EPP=760.854;EPPR=74.6689;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=13182;QR=1243;RO=33;RPL=0;RPP=760.854;RPPR=74.6689;RPR=349;RUN=1;SAF=349;SAP=760.854;SAR=0;SRF=33;SRP=74.6689;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 1/1:198:12,186:12:450:186:7033:-592.009,-18.757,0 1/1:86:5,81:5:191:81:3028:-255.137,-8.33006,0 0/1:98:16,82:16:602:82:3121:-251.548,0,-25.0134 dDocent_Contig_5261 26 . G A 269.816 . AB=0.254902;ABP=29.6215;AC=3;AF=0.5;AN=6;AO=13;CIGAR=1X;DP=51;DPB=51;DPRA=0;EPP=31.2394;EPPR=85.5263;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=519;QR=1482;RO=38;RPL=0;RPP=31.2394;RPPR=85.5263;RPR=13;RUN=1;SAF=13;SAP=31.2394;SAR=0;SRF=38;SRP=85.5263;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:27:20,7:20:792:7:277:-17.1716,0,-63.468 0/1:12:10,2:10:370:2:79:-3.88488,0,-30.0186 0/1:12:8,4:8:320:4:163:-11.4461,0,-25.5537 dDocent_Contig_5262 14 . G C 9238.58 . AB=0.0879121;ABP=137.236;AC=0;AF=0;AN=6;AO=8;CIGAR=2M1X6M;DP=424;DPB=402.222;DPRA=0;EPP=20.3821;EPPR=118.098;GTI=0;LEN=1;MEANALT=5;MQM=60;MQMR=60;NS=3;NUMALT=4;ODDS=0;PAIRED=0.875;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=324;QR=2078;RO=53;RPL=0;RPP=20.3821;RPPR=118.098;RPR=8;RUN=1;SAF=8;SAP=20.3821;SAR=0;SRF=53;SRP=118.098;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|0:212:17,146,21,0,27:17:668:146,21,0,27:5676,742,0,1071:-494.493,-33.2169,-44.2138,-439.2,-27.7627,-487.822,-499.61,-88.1642,-494.143,-554.554,-411.455,0,-405.988,-466.399,-458.271 0|0:91:13,57,6,8,6:13:513:57,6,8,6:2212,197,324,244:-177.813,0,-25.0568,-165.819,-26.3162,-206.225,-155.008,-15.4935,-181.313,-194.812,-161.598,-22.085,-187.903,-177.092,-202.005 0|0:121:23,83,1,0,4:23:897:83,1,0,4:3214,32,0,162:-257.075,0,-48.7433,-261.421,-71.1524,-334.851,-263.998,-73.7288,-335.152,-337.73,-250.639,-60.3689,-321.793,-324.371,-323.167 dDocent_Contig_5263 17 . T A 407.593 . AB=0.355556;ABP=11.1654;AC=3;AF=0.5;AN=6;AO=16;CIGAR=1X;DP=45;DPB=45;DPRA=0;EPP=37.7539;EPPR=65.983;GTI=0;LEN=1;MEANALT=1;MQM=57.1875;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=0.0625;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=652;QR=1156;RO=29;RPL=0;RPP=37.7539;RPPR=65.983;RPR=16;RUN=1;SAF=16;SAP=37.7539;SAR=0;SRF=29;SRP=65.983;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:24:17,7:17:668:7:284:-18.6781,0,-53.2191 0/1:15:7,8:7:283:8:327:-25.2515,0,-21.3276 0/1:6:5,1:5:205:1:41:-2.28305,0,-17.0288 dDocent_Contig_5265 12 . G C 581.317 . AB=0.202899;ABP=108.815;AC=2;AF=0.333333;AN=6;AO=28;CIGAR=1X;DP=181;DPB=181;DPRA=1.60465;EPP=63.8115;EPPR=335.246;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=6.93889e-18;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=1139;QR=6097;RO=153;RPL=0;RPP=63.8115;RPPR=335.246;RPR=28;RUN=1;SAF=28;SAP=63.8115;SAR=0;SRF=153;SRP=335.246;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:116:92,24:92:3667:24:975:-53.1274,0,-295.127 0/1:22:18,4:18:713:4:164:-8.52724,0,-57.8682 0/0:43:43,0:43:1717:0:0:0,-12.9443,-154.748 dDocent_Contig_5266 36 . A C 1187.82 . AB=0.609756;ABP=7.30028;AC=4;AF=0.666667;AN=6;AO=38;CIGAR=1X;DP=55;DPB=55;DPRA=0;EPP=85.5263;EPPR=39.9253;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=1530;QR=669;RO=17;RPL=0;RPP=85.5263;RPPR=39.9253;RPR=38;RUN=1;SAF=38;SAP=85.5263;SAR=0;SRF=17;SRP=39.9253;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 1/1:14:1,13:1:41:13:525:-43.5009,-0.119853,0 0/1:16:8,8:8:305:8:317:-24.0793,0,-22.9887 0/1:25:8,17:8:323:17:688:-54.7236,0,-21.9128 dDocent_Contig_5268 18 . T A 104.062 . AB=0.0987124;ABP=328.908;AC=3;AF=0.5;AN=6;AO=23;CIGAR=1X;DP=233;DPB=233;DPRA=0;EPP=52.9542;EPPR=459.02;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=58.1381;NS=3;NUMALT=1;ODDS=0;PAIRED=0.869565;PAIREDR=0.847619;PAO=0;PQA=0;PQR=0;PRO=0;QA=924;QR=8325;RO=210;RPL=0;RPP=52.9542;RPPR=459.02;RPR=23;RUN=1;SAF=23;SAP=52.9542;SAR=0;SRF=210;SRP=459.02;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:107:95,12:95:3783:12:486:-11.8814,0,-307.945 0/1:55:50,5:50:1974:5:196:-1.45789,0,-158.887 0/1:71:65,6:65:2568:6:242:-0.784401,0,-209.621 dDocent_Contig_5269 49 . G A 5474.86 . AB=0.804651;ABP=176.334;AC=3;AF=0.5;AN=6;AO=173;CIGAR=1X;DP=215;DPB=215;DPRA=0;EPP=378.675;EPPR=79.0118;GTI=0;LEN=1;MEANALT=1.66667;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=6840;QR=1387;RO=35;RPL=0;RPP=378.675;RPPR=79.0118;RPR=173;RUN=1;SAF=173;SAP=378.675;SAR=0;SRF=35;SRP=79.0118;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:122:18,98:18:713:98:3904:-316.047,0,-29.1721 0/1:33:4,29:4:163:29:1154:-94.2106,0,-5.12444 0/1:60:13,46:13:511:46:1782:-142.752,0,-28.4684 dDocent_Contig_5272 45 . T A 5115.83 . AB=0.792079;ABP=152.691;AC=4;AF=0.666667;AN=6;AO=160;CIGAR=1X2M;DP=202;DPB=202;DPRA=0;EPP=350.446;EPPR=79.0118;GTI=0;LEN=1;MEANALT=1.33333;MQM=59.7;MQMR=60;NS=3;NUMALT=2;ODDS=0;PAIRED=0.98125;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=6306;QR=1379;RO=35;RPL=0;RPP=350.446;RPPR=79.0118;RPR=160;RUN=1;SAF=160;SAP=350.446;SAR=0;SRF=35;SRP=79.0118;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|1:127:19,0,108:19:743:0,108:0,4273:-346.22,-351.939,-413.024,0,-61.4762,-28.965 0|1:29:12,0,17:12:474:0,17:0,671:-51.9937,-55.6061,-94.6112,0,-39.3995,-34.282 1|1:46:4,7,35:4:162:7,35:266,1362:-118.893,-98.2841,-109.537,-8.43094,0,-11.2622 dDocent_Contig_5274 52 . G A 2679.42 . AB=0.747899;ABP=66.5304;AC=3;AF=0.5;AN=6;AO=89;CIGAR=1X1M1X;DP=119;DPB=119;DPRA=0;EPP=196.271;EPPR=68.1545;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=3427;QR=1105;RO=30;RPL=89;RPP=196.271;RPPR=68.1545;RPR=0;RUN=1;SAF=89;SAP=196.271;SAR=0;SRF=30;SRP=68.1545;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|1:55:19,36:19:706:36:1372:-107.187,0,-47.3137 0|1:39:7,32:7:258:32:1260:-101.936,0,-11.8336 0|1:25:4,21:4:141:21:795:-64.341,0,-5.50712 dDocent_Contig_5275 19 . C T 65224.6 . AB=0.0533915;ABP=5162.34;AC=0;AF=0;AN=6;AO=159;CIGAR=1X1M2X;DP=2978;DPB=2978;DPRA=0;EPP=348.274;EPPR=673.995;GTI=0;LEN=1;MEANALT=9.66667;MQM=60;MQMR=60;NS=3;NUMALT=3;ODDS=4.44089e-16;PAIRED=0.477987;PAIREDR=0.0614887;PAO=0;PQA=0;PQR=0;PRO=0;QA=6317;QR=12182;RO=309;RPL=0;RPP=348.274;RPPR=673.995;RPR=159;RUN=1;SAF=159;SAP=348.274;SAR=0;SRF=309;SRP=673.995;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|0:1522:126,82,513,691:126:4964:82,513,691:3244,20369,27746:-3515.09,-3286.06,-3669.74,-1877.82,-2019.22,-2131.75,-1266.84,-1408.24,0,-1467.19 0|0:598:72,31,246,214:72:2837:31,246,214:1236,9748,8513:-1247.55,-1167.44,-1391.5,-467.502,-599.103,-626.837,-568.339,-699.94,0,-737.308 0|0:858:111,46,283,373:111:4381:46,283,373:1837,11250,14977:-1765.34,-1647.46,-1994.06,-873.603,-1082.76,-1148.87,-564.694,-773.854,0,-812.866 dDocent_Contig_5277 24 . C T 770.795 . AB=0.124661;ABP=454.541;AC=1;AF=0.166667;AN=6;AO=46;CIGAR=1X1M1X1M7D1M1X;DP=369;DPB=344.231;DPRA=0;EPP=102.898;EPPR=593.651;GTI=0;LEN=1;MEANALT=2.66667;MQM=59.087;MQMR=60;NS=3;NUMALT=2;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=1817;QR=10684;RO=272;RPL=0;RPP=102.898;RPPR=593.651;RPR=46;RUN=1;SAF=46;SAP=102.898;SAR=0;SRF=272;SRP=593.651;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|1:229:168,30,25:168:6655:30,25:1185,1006:-46.9276,0,-538.72,-14.5937,-464.846,-554.824 0|0:47:30,8,9:30:1149:8,9:316,364:-20.9856,-4.01831,-95.8778,0,-68.2696,-91.5655 0|0:93:74,8,11:74:2880:8,11:316,448:-14.6891,-11.0462,-245.29,0,-210.738,-233.352 dDocent_Contig_5278 126 . A C 43.4706 . AB=0.142857;ABP=34.0313;AC=1;AF=0.166667;AN=6;AO=4;CIGAR=1X;DP=93;DPB=93;DPRA=0.861538;EPP=3.0103;EPPR=196.271;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=0;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=158;QR=3162;RO=89;RPL=0;RPP=11.6962;RPPR=196.271;RPR=4;RUN=1;SAF=2;SAP=3.0103;SAR=2;SRF=0;SRP=196.271;SRR=89;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:59:59,0:59:2114:0:0:0,-17.7608,-190.529 0/0:6:6,0:6:215:0:0:0,-1.80618,-19.6992 0/1:28:24,4:24:833:4:158:-6.17092,0,-66.8556 dDocent_Contig_5279 34 . T C 10706.7 . AB=0.875421;ABP=366.597;AC=4;AF=0.666667;AN=6;AO=334;CIGAR=2X2M1D2X;DP=373;DPB=325.143;DPRA=0;EPP=728.282;EPPR=79.0118;GTI=0;LEN=1;MEANALT=2.33333;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=1.38778e-17;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=12928;QR=1329;RO=35;RPL=0;RPP=728.282;RPPR=79.0118;RPR=334;RUN=1;SAF=334;SAP=728.282;SAR=0;SRF=35;SRP=79.0118;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|1:219:26,191:26:999:191:7414:-601.487,0,-24.666 0|1:78:9,69:9:330:69:2668:-216.812,0,-6.56217 1|1:76:0,74:0:0:74:2846:-255.898,-22.2762,0 dDocent_Contig_5280 42 . A C 754.907 . AB=0.241135;ABP=85.0796;AC=3;AF=0.5;AN=6;AO=34;CIGAR=1X;DP=141;DPB=141;DPRA=0;EPP=76.8404;EPPR=235.358;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=1360;QR=4149;RO=107;RPL=0;RPP=76.8404;RPPR=235.358;RPR=34;RUN=1;SAF=34;SAP=76.8404;SAR=0;SRF=107;SRP=235.358;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:66:54,12:54:2063:12:489:-24.4933,0,-165.986 0/1:29:21,8:21:845:8:319:-20.347,0,-67.6317 0/1:46:32,14:32:1241:14:552:-36.1733,0,-98.1145 dDocent_Contig_5281 8 . C A 1024.38 . AB=0.235577;ABP=129.332;AC=3;AF=0.5;AN=6;AO=49;CIGAR=1X;DP=208;DPB=208;DPRA=0;EPP=109.412;EPPR=348.274;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=1.38778e-17;PAIRED=1;PAIREDR=0.993711;PAO=0;PQA=0;PQR=0;PRO=0;QA=1884;QR=6133;RO=159;RPL=0;RPP=109.412;RPPR=348.274;RPR=49;RUN=1;SAF=49;SAP=109.412;SAR=0;SRF=159;SRP=348.274;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:111:84,27:84:3246:27:1040:-60.4942,0,-258.866 0/1:47:36,11:36:1377:11:422:-24.1851,0,-110.063 0/1:50:39,11:39:1510:11:422:-23.2814,0,-121.12 dDocent_Contig_5282 40 . C T 11742 . AB=0.829132;ABP=338.919;AC=4;AF=0.666667;AN=6;AO=359;CIGAR=1X;DP=424;DPB=424;DPRA=0;EPP=782.569;EPPR=144.156;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=2.77556e-17;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=14449;QR=2632;RO=65;RPL=0;RPP=782.569;RPPR=144.156;RPR=359;RUN=1;SAF=359;SAP=782.569;SAR=0;SRF=65;SRP=144.156;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:258:41,217:41:1659:217:8731:-707.586,0,-71.8664 1/1:67:4,63:4:161:63:2519:-211.976,-5.29374,0 0/1:99:20,79:20:812:79:3199:-258.158,0,-43.5927 dDocent_Contig_5283 14 . G A 12139 . AB=0.47585;ABP=5.84215;AC=3;AF=0.5;AN=6;AO=266;CIGAR=2X;DP=559;DPB=559;DPRA=0;EPP=580.622;EPPR=191.928;GTI=0;LEN=1;MEANALT=3;MQM=59.8421;MQMR=60;NS=3;NUMALT=2;ODDS=0;PAIRED=0.977444;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=10547;QR=3290;RO=87;RPL=0;RPP=580.622;RPPR=191.928;RPR=266;RUN=1;SAF=266;SAP=580.622;SAR=0;SRF=87;SRP=191.928;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 1|0:274:38,148,88:38:1455:148,88:5890,3510:-643.145,-169.66,-244.504,-365.538,0,-458.446 1|0:154:23,63,65:23:866:63,65:2501,2582:-340.532,-141.625,-193.609,-134.895,0,-186.276 1|0:131:26,55,44:26:969:55,44:2156,1767:-235.745,-66.2982,-129.052,-97.9729,0,-164.042 dDocent_Contig_5284 22 . T A 600.712 . AB=0.328947;ABP=22.325;AC=3;AF=0.5;AN=6;AO=25;CIGAR=1X;DP=76;DPB=76;DPRA=0;EPP=57.2971;EPPR=113.755;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=971;QR=2001;RO=51;RPL=0;RPP=57.2971;RPPR=113.755;RPR=25;RUN=1;SAF=25;SAP=57.2971;SAR=0;SRF=51;SRP=113.755;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:50:31,19:31:1217:19:740:-51.871,0,-94.7478 0/1:13:11,2:11:427:2:81:-3.77234,0,-34.8657 0/1:13:9,4:9:357:4:150:-9.94827,0,-28.5783 dDocent_Contig_5285 27 . C A 54.0357 . AB=0.272727;ABP=7.94546;AC=1;AF=0.166667;AN=6;AO=3;CIGAR=1X;DP=58;DPB=58;DPRA=0.468085;EPP=9.52472;EPPR=122.441;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=8.67362e-19;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=113;QR=2200;RO=55;RPL=0;RPP=9.52472;RPPR=122.441;RPR=3;RUN=1;SAF=3;SAP=9.52472;SAR=0;SRF=55;SRP=122.441;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:36:36,0:36:1429:0:0:0,-10.8371,-128.854 0/1:11:8,3:8:323:3:113:-7.22748,0,-26.1276 0/0:11:11,0:11:448:0:0:0,-3.31133,-40.676 dDocent_Contig_5286 16 . T C 3845.78 . AB=0.0740741;ABP=88.0998;AC=0;AF=0;AN=6;AO=4;CIGAR=2X;DP=154;DPB=154;DPRA=0;EPP=11.6962;EPPR=68.1545;GTI=0;LEN=1;MEANALT=2;MQM=60;MQMR=60;NS=3;NUMALT=2;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=160;QR=1183;RO=30;RPL=0;RPP=11.6962;RPPR=68.1545;RPR=4;RUN=1;SAF=4;SAP=11.6962;SAR=0;SRF=30;SRP=68.1545;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|0:66:16,0,50:16:628:0,50:0,2009:-161.123,-165.939,-217.58,0,-52.0354,-36.9839 0|0:34:5,0,29:5:192:0,29:0,1171:-95.4337,-96.9389,-112.692,0,-16.1396,-7.40969 0|0:54:9,4,41:9:363:4,41:160,1653:-133.544,-123.074,-151.792,0,-16.7462,-17.5822 dDocent_Contig_5287 11 . G A 1670.58 . AB=0.292576;ABP=88.5891;AC=3;AF=0.5;AN=6;AO=67;CIGAR=1X8M2X;DP=229;DPB=231.182;DPRA=0;EPP=148.499;EPPR=309.188;GTI=0;LEN=1;MEANALT=3.33333;MQM=60;MQMR=60;NS=3;NUMALT=3;ODDS=0;PAIRED=0.985075;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=2616;QR=5565;RO=141;RPL=0;RPP=148.499;RPPR=309.188;RPR=67;RUN=1;SAF=67;SAP=148.499;SAR=0;SRF=141;SRP=309.188;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|1:116:74,5,2,31:74:2913:5,2,31:198,80,1199:-76.191,-82.1699,-320.292,-91.8763,-315.207,-330.901,0,-223.339,-233.044,-230.303 0|1:82:51,7,0,24:51:2017:7,0,24:282,0,940:-61.932,-54.0385,-217.928,-77.2846,-220.035,-243.279,0,-142.743,-165.988,-158.763 0|1:31:16,0,3,12:16:635:0,3,12:0,118,477:-34.4577,-39.2742,-91.5479,-29.5682,-81.8415,-80.9384,0,-52.2766,-42.5703,-48.6642 dDocent_Contig_5288 118 . T C 133.81 . AB=0.296296;ABP=12.7417;AC=2;AF=0.333333;AN=6;AO=8;CIGAR=1X1M1X;DP=46;DPB=46;DPRA=0.710526;EPP=20.3821;EPPR=85.5263;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=253;QR=1306;RO=38;RPL=0;RPP=20.3821;RPPR=85.5263;RPR=8;RUN=1;SAF=0;SAP=20.3821;SAR=8;SRF=0;SRP=85.5263;SRR=38;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|1:17:10,7:10:353:7:219:-14.9004,0,-26.9917 0|0:19:19,0:19:662:0:0:0,-5.71957,-59.9037 0|1:10:9,1:9:291:1:34:-0.388611,0,-23.4936 dDocent_Contig_5289 13 . C T 171.766 . AB=0.171875;ABP=62.8615;AC=3;AF=0.5;AN=6;AO=11;CIGAR=1X2M;DP=64;DPB=64;DPRA=0;EPP=26.8965;EPPR=109.412;GTI=0;LEN=1;MEANALT=1.33333;MQM=60;MQMR=60;NS=3;NUMALT=2;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=444;QR=1945;RO=49;RPL=0;RPP=26.8965;RPPR=109.412;RPR=11;RUN=1;SAF=11;SAP=26.8965;SAR=0;SRF=49;SRP=109.412;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|1:27:19,4,4:19:751:4,4:157,163:-7.73519,-0.550135,-61.1312,0,-48.8859,-60.5933 0|1:25:21,0,4:21:841:0,4:0,161:-7.34973,-13.6714,-82.9536,0,-69.6839,-68.4798 0|1:12:9,0,3:9:353:0,3:0,120:-7.57554,-10.2848,-39.3081,0,-29.4209,-28.5178 dDocent_Contig_5290 15 . C T 600.471 . AB=0.285714;ABP=39.3049;AC=3;AF=0.5;AN=6;AO=26;CIGAR=1X;DP=91;DPB=91;DPRA=0;EPP=59.4686;EPPR=144.156;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=1021;QR=2558;RO=65;RPL=0;RPP=59.4686;RPPR=144.156;RPR=26;RUN=1;SAF=26;SAP=59.4686;SAR=0;SRF=65;SRP=144.156;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:44:26,18:26:1026:18:711:-51.0713,0,-79.3904 0/1:16:12,4:12:475:4:162:-10.1505,0,-38.2798 0/1:31:27,4:27:1057:4:148:-4.34756,0,-86.0947 dDocent_Contig_5291 22 . C T 210.464 . AB=0.27027;ABP=19.9713;AC=3;AF=0.5;AN=6;AO=10;CIGAR=1X;DP=37;DPB=37;DPRA=0;EPP=24.725;EPPR=61.6401;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=401;QR=1092;RO=27;RPL=0;RPP=24.725;RPPR=61.6401;RPR=10;RUN=1;SAF=10;SAP=24.725;SAR=0;SRF=27;SRP=61.6401;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:16:10,6:10:403:6:245:-17.613,0,-31.813 0/1:13:10,3:10:406:3:116:-6.9036,0,-32.987 0/1:8:7,1:7:283:1:40:-1.58744,0,-23.4351 dDocent_Contig_5292 67 . C A 47.7383 . AB=0.12069;ABP=75.4926;AC=1;AF=0.166667;AN=6;AO=7;CIGAR=1X;DP=86;DPB=86;DPRA=4.14286;EPP=18.2106;EPPR=174.557;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=260;QR=2987;RO=79;RPL=7;RPP=18.2106;RPPR=174.557;RPR=0;RUN=1;SAF=7;SAP=18.2106;SAR=0;SRF=79;SRP=174.557;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:58:51,7:51:1920:7:260:-6.29671,0,-155.58 0/0:12:12,0:12:455:0:0:0,-3.61236,-41.2897 0/0:16:16,0:16:612:0:0:0,-4.81648,-55.4153 dDocent_Contig_5293 7 . A G 880.992 . AB=0.306667;ABP=51.7092;AC=3;AF=0.5;AN=6;AO=46;CIGAR=1X;DP=150;DPB=150;DPRA=0;EPP=102.898;EPPR=224.5;GTI=0;LEN=1;MEANALT=1.66667;MQM=59.1304;MQMR=60;NS=3;NUMALT=1;ODDS=6.93889e-18;PAIRED=0.652174;PAIREDR=0.901961;PAO=0;PQA=0;PQR=0;PRO=0;QA=1528;QR=3885;RO=102;RPL=0;RPP=102.898;RPPR=224.5;RPR=46;RUN=1;SAF=46;SAP=102.898;SAR=0;SRF=102;SRP=224.5;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:72:54,18:54:2075:18:573:-30.1803,0,-165.309 0/1:38:17,20:17:640:20:665:-48.8912,0,-46.6724 0/1:40:31,8:31:1170:8:290:-14.5506,0,-93.7389 dDocent_Contig_5294 14 . T C 127.956 . AB=0;ABP=0;AC=0;AF=0;AN=6;AO=2;CIGAR=1M4D2M1X3M1D3M2D5M1X1M1X1M1X1M1X;DP=132;DPB=131.207;DPRA=0.4;EPP=7.35324;EPPR=261.416;GTI=0;LEN=1;MEANALT=1;MQM=12;MQMR=60;NS=3;NUMALT=3;ODDS=0;PAIRED=0;PAIREDR=0.941176;PAO=0;PQA=0;PQR=0;PRO=0;QA=24;QR=4623;RO=119;RPL=0;RPP=7.35324;RPPR=261.416;RPR=2;RUN=1;SAF=2;SAP=7.35324;SAR=0;SRF=119;SRP=261.416;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|0:75:73,0,0,0:73:2840:0,0,0:0,0,0:0,-21.9752,-255.35,-21.9752,-255.35,-255.35,-21.9752,-255.35,-255.35,-255.35 0|0:30:28,2,0,0:28:1083:2,0,0:24,0,0:0,-7.29641,-96.0371,-8.42884,-96.6392,-97.6606,-8.42884,-96.6392,-97.6606,-97.6606 0|0:27:18,0,2,6:18:700:0,2,6:0,82,243:-14.6195,-20.038,-77.5512,-13.2683,-70.7818,-70.1798,0,-57.5112,-50.7411,-55.7051 dDocent_Contig_5296 12 . T C 4431.72 . AB=0.513986;ABP=3.49622;AC=3;AF=0.5;AN=6;AO=147;CIGAR=1X;DP=286;DPB=286;DPRA=0;EPP=322.217;EPPR=304.845;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=5936;QR=5530;RO=139;RPL=0;RPP=322.217;RPPR=304.845;RPR=147;RUN=1;SAF=147;SAP=322.217;SAR=0;SRF=139;SRP=304.845;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:173:78,95:78:3122:95:3851:-294.49,0,-228.97 0/1:43:34,9:34:1327:9:365:-20.2706,0,-106.753 0/1:70:27,43:27:1081:43:1720:-133.934,0,-76.5063 dDocent_Contig_5297 135 . G A 124.651 . AB=0.12782;ABP=163.03;AC=3;AF=0.5;AN=6;AO=17;CIGAR=1X;DP=133;DPB=133;DPRA=0;EPP=39.9253;EPPR=254.901;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=625;QR=4139;RO=116;RPL=0;RPP=39.9253;RPPR=254.901;RPR=17;RUN=1;SAF=0;SAP=39.9253;SAR=17;SRF=0;SRP=254.901;SRR=116;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:68:59,9:59:2135:9:334:-9.94276,0,-171.936 0/1:35:30,5:30:1051:5:180:-6.01578,0,-84.3554 0/1:30:27,3:27:953:3:111:-1.32302,0,-77.0481 dDocent_Contig_5298 23 . T G 106.539 . AB=0.263158;ABP=12.2676;AC=1;AF=0.166667;AN=6;AO=7;CIGAR=1X3M1X;DP=81;DPB=81;DPRA=4.5625;EPP=18.2106;EPPR=161.528;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=278;QR=2908;RO=73;RPL=0;RPP=18.2106;RPPR=161.528;RPR=7;RUN=1;SAF=7;SAP=18.2106;SAR=0;SRF=73;SRP=161.528;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|0:54:52,2:52:2057:2:80:0,-8.66383,-177.729 0|0:8:7,0:7:284:0:0:0,-2.10721,-25.7871 0|1:19:14,5:14:567:5:198:-12.4778,0,-45.6533 dDocent_Contig_5299 107 . N C 301.625 . AB=0;ABP=0;AC=6;AF=1;AN=6;AO=10;CIGAR=1X;DP=10;DPB=10;DPRA=0;EPP=24.725;EPPR=0;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=0;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=319;QR=0;RO=0;RPL=0;RPP=24.725;RPPR=0;RPR=10;RUN=1;SAF=0;SAP=24.725;SAR=10;SRF=0;SRP=0;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 1/1:3:0,3:0:0:3:105:-9.79616,-0.90309,0 1/1:5:0,5:0:0:5:145:-13.336,-1.50515,0 1/1:2:0,2:0:0:2:69:-6.55266,-0.60206,0 dDocent_Contig_5300 89 . C T 517.915 . AB=0.147059;ABP=186.947;AC=1;AF=0.166667;AN=6;AO=25;CIGAR=1X1M1X2M;DP=170;DPB=170;DPRA=0;EPP=57.2971;EPPR=211.472;GTI=0;LEN=1;MEANALT=3.66667;MQM=58.88;MQMR=60;NS=3;NUMALT=4;ODDS=0;PAIRED=0.84;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=855;QR=3212;RO=96;RPL=25;RPP=57.2971;RPPR=211.472;RPR=0;RUN=1;SAF=25;SAP=57.2971;SAR=0;SRF=96;SRP=211.472;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|0:93:62,8,11,1,11:62:2082:8,11,1,11:274,367,35,381:-11.6012,-8.0207,-174.27,-0.560901,-146.971,-165.904,-27.4182,-173.831,-166.368,-195.774,0,-146.413,-138.95,-165.81,-165.345 0|1:49:16,16,6,3,8:16:534:16,6,3,8:546,209,84,275:-39.4721,0,-38.412,-27.2962,-26.2354,-68.7181,-37.6402,-36.5798,-63.8743,-79.9624,-22.0146,-20.9534,-48.2501,-58.5926,-62.8341 0|0:28:18,1,4,0,5:18:596:1,4,0,5:35,138,0,149:-6.15856,-8.72576,-56.6413,-0.452382,-45.8311,-47.4758,-11.5771,-56.9423,-48.6799,-59.7909,0,-45.3468,-37.0852,-48.1953,-46.6901 dDocent_Contig_5301 9 . A G 150.796 . AB=0.147727;ABP=97.8642;AC=2;AF=0.333333;AN=6;AO=13;CIGAR=1X;DP=230;DPB=230;DPRA=0.309859;EPP=31.2394;EPPR=474.22;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=493;QR=8304;RO=217;RPL=0;RPP=31.2394;RPPR=474.22;RPR=13;RUN=1;SAF=13;SAP=31.2394;SAR=0;SRF=217;SRP=474.22;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:142:142,0:142:5420:0:0:0,-42.7463,-487.784 0/1:26:20,6:20:765:6:222:-12.5099,0,-61.3504 0/1:62:55,7:55:2119:7:271:-6.09258,0,-172.275 dDocent_Contig_5302 23 . A T 619.865 . AB=0.119097;ABP=616.734;AC=3;AF=0.5;AN=6;AO=58;CIGAR=1X;DP=487;DPB=487;DPRA=0;EPP=128.956;EPPR=917.2;GTI=0;LEN=1;MEANALT=1.66667;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=2.77556e-17;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=2346;QR=16770;RO=421;RPL=0;RPP=128.956;RPPR=917.2;RPR=58;RUN=1;SAF=58;SAP=128.956;SAR=0;SRF=421;SRP=917.2;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:281:247,26:247:9839:26:1045:-11.7654,0,-802.337 0/1:56:47,9:47:1850:9:366:-16.4475,0,-149.858 0/1:150:127,23:127:5081:23:935:-39.2965,0,-412.006 dDocent_Contig_5303 31 . G A 621.625 . AB=0.228346;ABP=84.4149;AC=2;AF=0.333333;AN=6;AO=30;CIGAR=1X;DP=162;DPB=162;DPRA=0;EPP=68.1545;EPPR=289.645;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=0.992424;PAO=0;PQA=0;PQR=0;PRO=0;QA=1183;QR=5310;RO=132;RPL=0;RPP=68.1545;RPPR=289.645;RPR=30;RUN=1;SAF=30;SAP=68.1545;SAR=0;SRF=132;SRP=289.645;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:89:66,23:66:2638:23:903:-54.7857,0,-210.74 0/0:35:34,1:34:1375:1:36:0,-6.93777,-120.404 0/1:38:32,6:32:1297:6:244:-10.8997,0,-105.552 dDocent_Contig_5304 8 . C T 97.4201 . AB=0.333333;ABP=9.52472;AC=2;AF=0.333333;AN=6;AO=9;CIGAR=1X;DP=100;DPB=100;DPRA=0.184932;EPP=22.5536;EPPR=200.614;GTI=0;LEN=1;MEANALT=1;MQM=26;MQMR=54.6813;NS=3;NUMALT=1;ODDS=0;PAIRED=0;PAIREDR=0.956044;PAO=0;PQA=0;PQR=0;PRO=0;QA=348;QR=3509;RO=91;RPL=0;RPP=22.5536;RPPR=200.614;RPR=9;RUN=1;SAF=9;SAP=22.5536;SAR=0;SRF=91;SRP=200.614;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:73:73,0:73:2813:0:0:0,-21.9752,-248.566 0/1:7:2,5:2:78:5:192:-9.73946,0,-5.29626 0/1:20:16,4:16:618:4:156:-3.52101,0,-31.8299 dDocent_Contig_5305 10 . T A 764.25 . AB=0.117021;ABP=841.291;AC=2;AF=0.333333;AN=6;AO=79;CIGAR=1X;DP=759;DPB=759;DPRA=0;EPP=174.557;EPPR=1477.44;GTI=0;LEN=1;MEANALT=1.33333;MQM=59.9494;MQMR=56.0825;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=0.986745;PAO=0;PQA=0;PQR=0;PRO=0;QA=3167;QR=27116;RO=679;RPL=0;RPP=174.557;RPPR=1477.44;RPR=79;RUN=1;SAF=79;SAP=174.557;SAR=0;SRF=679;SRP=1477.44;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:434:384,49:384:15407:49:1956:-45.488,0,-1185.77 0/0:101:99,2:99:3904:2:82:0,-22.6244,-327.263 0/1:224:196,28:196:7805:28:1129:-34.4599,0,-605.118 dDocent_Contig_5306 106 . N T 5577.79 . AB=0;ABP=0;AC=6;AF=1;AN=6;AO=181;CIGAR=2X;DP=181;DPB=181;DPRA=0;EPP=396.047;EPPR=0;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=0;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=6183;QR=0;RO=0;RPL=0;RPP=396.047;RPPR=0;RPR=181;RUN=1;SAF=0;SAP=396.047;SAR=181;SRF=0;SRP=0;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 1|1:135:0,135:0:0:135:4598:-414.015,-40.6391,0 1|1:17:0,17:0:0:17:586:-53.0655,-5.11751,0 1|1:29:0,29:0:0:29:999:-90.2219,-8.72987,0 dDocent_Contig_5307 17 . C G 149.178 . AB=0.144737;ABP=86.3263;AC=1;AF=0.166667;AN=6;AO=11;CIGAR=1X;DP=140;DPB=140;DPRA=2.375;EPP=26.8965;EPPR=283.13;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=58.5426;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=433;QR=5200;RO=129;RPL=0;RPP=26.8965;RPPR=283.13;RPR=11;RUN=1;SAF=11;SAP=26.8965;SAR=0;SRF=129;SRP=283.13;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:76:65,11:65:2628:11:433:-16.4406,0,-213.249 0/0:23:23,0:23:919:0:0:0,-6.92369,-82.4849 0/0:41:41,0:41:1653:0:0:0,-12.3422,-148.995 dDocent_Contig_5308 15 . T C 304.386 . AB=0.113636;ABP=402.364;AC=2;AF=0.333333;AN=6;AO=35;CIGAR=1X2M1X;DP=363;DPB=363;DPRA=2.8;EPP=79.0118;EPPR=704.396;GTI=0;LEN=1;MEANALT=2;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=1390;QR=12763;RO=323;RPL=0;RPP=79.0118;RPPR=704.396;RPR=35;RUN=1;SAF=35;SAP=79.0118;SAR=0;SRF=323;SRP=704.396;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|1:223:202,20:202:8025:20:802:-5.4808,0,-654.858 0|0:55:55,0:55:2142:0:0:0,-16.5566,-192.982 0|1:85:66,15:66:2596:15:588:-28.4807,0,-209.015 dDocent_Contig_5309 13 . A C 862.886 . AB=0.106101;ABP=511.083;AC=2;AF=0.333333;AN=6;AO=40;CIGAR=3M1X7M;DP=377;DPB=381.273;DPRA=0;EPP=89.8692;EPPR=545.878;GTI=0;LEN=1;MEANALT=6.33333;MQM=60;MQMR=60;NS=3;NUMALT=3;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=1613;QR=9805;RO=250;RPL=0;RPP=89.8692;RPPR=545.878;RPR=40;RUN=1;SAF=40;SAP=89.8692;SAR=0;SRF=250;SRP=545.878;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|0:244:178,16,28,17:178:6993:16,28,17:598,1098,682:-36.6997,-41.3394,-611.677,0,-526.212,-566.731,-34.0897,-560.303,-518.969,-604.133 0|1:51:30,6,7,7:30:1173:6,7,7:237,275,286:-14.5739,-4.10726,-98.735,-0.993322,-77.9273,-95.319,0,-76.9389,-73.8239,-94.331 0|1:82:42,5,12,16:42:1639:5,12,16:202,470,645:-40.5235,-36.513,-169.729,-14.5275,-132.593,-145.634,0,-118.068,-96.0806,-129.906 dDocent_Contig_5310 139 . A G 2573.6 . AB=0.8;ABP=96.8179;AC=3;AF=0.5;AN=6;AO=96;CIGAR=1X;DP=120;DPB=120;DPRA=0;EPP=211.472;EPPR=55.1256;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=3312;QR=843;RO=24;RPL=0;RPP=211.472;RPPR=55.1256;RPR=96;RUN=1;SAF=0;SAP=211.472;SAR=96;SRF=0;SRP=55.1256;SRR=24;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:56:10,46:10:355:46:1587:-126.265,0,-15.4332 0/1:40:10,30:10:351:30:1029:-80.8787,0,-19.886 0/1:24:4,20:4:137:20:696:-55.7395,0,-5.44267 dDocent_Contig_5311 42 . T C 596.853 . AB=0;ABP=0;AC=0;AF=0;AN=6;AO=3;CIGAR=1X3M1X1M2I1M1X1M1X;DP=96;DPB=96.6;DPRA=0;EPP=9.52472;EPPR=152.842;GTI=0;LEN=1;MEANALT=2;MQM=21.6667;MQMR=60;NS=3;NUMALT=2;ODDS=0;PAIRED=0;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=120;QR=2706;RO=69;RPL=0;RPP=9.52472;RPPR=152.842;RPR=3;RUN=1;SAF=3;SAP=9.52472;SAR=0;SRF=69;SRP=152.842;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|0:57:38,0,19:38:1481:0,19:0,765:-52.0115,-63.4507,-185.165,0,-122.112,-116.392 0|0:11:7,0,4:7:274:0,4:0,157:-11.1966,-13.3038,-35.8329,0,-22.9208,-21.7167 0|0:28:24,3,1:24:951:3,1:120,41:0,-2.43994,-79.801,-3.79228,-77.3195,-81.9283 dDocent_Contig_5312 42 . A C 107.705 . AB=0.195652;ABP=40.0197;AC=2;AF=0.333333;AN=6;AO=9;CIGAR=1X;DP=65;DPB=65;DPRA=1.21053;EPP=22.5536;EPPR=122.441;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=304;QR=1849;RO=55;RPL=0;RPP=22.5536;RPPR=122.441;RPR=9;RUN=1;SAF=9;SAP=22.5536;SAR=0;SRF=55;SRP=122.441;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:29:22,7:22:757:7:227:-12.0174,0,-59.71 0/0:19:18,0:18:594:0:0:0,-5.41854,-53.4839 0/1:17:15,2:15:498:2:77:-2.19163,0,-40.0124 dDocent_Contig_5313 10 . G C 1524.14 . AB=0.324022;ABP=51.1588;AC=3;AF=0.5;AN=6;AO=58;CIGAR=1X;DP=179;DPB=179;DPRA=0;EPP=128.956;EPPR=265.758;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=2343;QR=4829;RO=121;RPL=0;RPP=128.956;RPPR=265.758;RPR=58;RUN=1;SAF=58;SAP=128.956;SAR=0;SRF=121;SRP=265.758;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:91:56,35:56:2254:35:1419:-100.564,0,-175.625 0/1:40:30,10:30:1202:10:395:-23.8653,0,-96.4153 0/1:48:35,13:35:1373:13:529:-33.5074,0,-109.371 dDocent_Contig_5314 48 . A T 991.553 . AB=0.25;ABP=94.2121;AC=1;AF=0.166667;AN=6;AO=49;CIGAR=1X;DP=270;DPB=270;DPRA=0;EPP=109.412;EPPR=474.259;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=1956;QR=8764;RO=221;RPL=0;RPP=109.412;RPPR=474.259;RPR=49;RUN=1;SAF=49;SAP=109.412;SAR=0;SRF=221;SRP=482.906;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:168:126,42:126:4967:42:1678:-100.678,0,-396.369 0/0:35:33,2:33:1307:2:82:0,-2.75637,-110.117 0/0:67:62,5:62:2490:5:196:0,-2.15508,-206.225 dDocent_Contig_5315 34 . T C 460.032 . AB=0.258824;ABP=45.9544;AC=3;AF=0.5;AN=6;AO=22;CIGAR=4M1X;DP=85;DPB=85.8;DPRA=0;EPP=50.7827;EPPR=135.47;GTI=0;LEN=1;MEANALT=1.33333;MQM=60;MQMR=60;NS=3;NUMALT=2;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=842;QR=2298;RO=61;RPL=0;RPP=50.7827;RPPR=135.47;RPR=22;RUN=1;SAF=22;SAP=50.7827;SAR=0;SRF=61;SRP=135.47;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|1:25:20,2,3:20:754:2,3:77,103:-2.31146,-1.99328,-63.2064,0,-55.4558,-60.8755 0|1:28:20,0,8:20:756:0,8:0,324:-21.1,-27.1206,-89.0696,0,-62.3459,-59.9377 0|1:32:21,0,11:21:788:0,11:0,415:-28.048,-34.3696,-98.9151,0,-64.9217,-61.6104 dDocent_Contig_5316 50 . G A 2100.21 . AB=0.43787;ABP=8.67669;AC=3;AF=0.5;AN=6;AO=74;CIGAR=1X4M;DP=169;DPB=169;DPRA=0;EPP=163.699;EPPR=170.214;GTI=0;LEN=1;MEANALT=2.33333;MQM=60;MQMR=60;NS=3;NUMALT=2;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=2903;QR=2926;RO=77;RPL=74;RPP=163.699;RPPR=170.214;RPR=0;RUN=1;SAF=74;SAP=163.699;SAR=0;SRF=77;SRP=170.214;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|1:96:52,4,40:52:1995:4,40:162,1551:-111.731,-114.025,-276.559,0,-150.361,-151.679 0|1:42:11,10,21:11:421:10,21:385,838:-65.7082,-37.4224,-68.951,0,-2.94066,-28.2217 0|1:31:14,3,13:14:510:3,13:115,514:-38.1044,-32.8821,-73.6211,0,-32.2109,-37.739 dDocent_Contig_5318 34 . A C 47.6487 . AB=0.0769231;ABP=144.49;AC=0;AF=0;AN=6;AO=8;CIGAR=1M1D2M2X3M1X;DP=162;DPB=161.2;DPRA=2.2931;EPP=20.3821;EPPR=311.359;GTI=0;LEN=1;MEANALT=2.5;MQM=52;MQMR=60;NS=3;NUMALT=2;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=319;QR=5545;RO=142;RPL=0;RPP=20.3821;RPPR=311.359;RPR=8;RUN=1;SAF=8;SAP=20.3821;SAR=0;SRF=142;SRP=311.359;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|0:91:75,7,9:75:2947:7,9:279,352:-6.28774,-6.0221,-246.304,0,-219.543,-239.675 0|0:29:29,0,0:29:1129:0,0:0,0:0,-8.72987,-101.899,-8.72987,-101.899,-101.899 0|0:42:38,1,2:38:1469:1,2:40,82:0,-8.16711,-128.489,-4.66795,-122.021,-124.694 dDocent_Contig_5319 107 . N T 617.623 . AB=0;ABP=0;AC=6;AF=1;AN=6;AO=20;CIGAR=1X2M1X;DP=20;DPB=20;DPRA=0;EPP=46.4397;EPPR=0;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=0;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=670;QR=0;RO=0;RPL=0;RPP=46.4397;RPPR=0;RPR=20;RUN=1;SAF=0;SAP=46.4397;SAR=20;SRF=0;SRP=0;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 1|1:2:0,2:0:0:2:69:-6.55266,-0.60206,0 1|1:13:0,13:0:0:13:441:-40.0163,-3.91339,0 1|1:5:0,5:0:0:5:160:-14.7158,-1.50515,0 dDocent_Contig_5320 23 . G A 31.5114 . AB=0.142857;ABP=34.0313;AC=2;AF=0.333333;AN=6;AO=4;CIGAR=1X;DP=39;DPB=39;DPRA=1.27273;EPP=11.6962;EPPR=79.0118;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=159;QR=1412;RO=35;RPL=0;RPP=11.6962;RPPR=79.0118;RPR=4;RUN=1;SAF=4;SAP=11.6962;SAR=0;SRF=35;SRP=79.0118;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:14:12,2:12:480:2:81:-3.47131,0,-39.3363 0/0:11:11,0:11:443:0:0:0,-3.31133,-40.2248 0/1:14:12,2:12:489:2:78:-3.18836,0,-40.1469 dDocent_Contig_5322 140 . A G 292.261 . AB=0.428571;ABP=4.25114;AC=1;AF=0.166667;AN=6;AO=14;CIGAR=1X;DP=78;DPB=78;DPRA=3.04545;EPP=33.4109;EPPR=141.985;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=513;QR=2393;RO=64;RPL=0;RPP=33.4109;RPPR=141.985;RPR=14;RUN=1;SAF=0;SAP=33.4109;SAR=14;SRF=0;SRP=141.985;SRR=64;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:39:37,2:37:1374:2:78:0,-4.3367,-116.542 0/0:11:11,0:11:411:0:0:0,-3.31133,-37.3378 0/1:28:16,12:16:608:12:435:-31.05,0,-46.6296 dDocent_Contig_5323 14 . C A 2421.35 . AB=0.380342;ABP=32.1117;AC=3;AF=0.5;AN=6;AO=89;CIGAR=1X1M1X;DP=234;DPB=234;DPRA=0;EPP=196.271;EPPR=317.874;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=3525;QR=5776;RO=145;RPL=0;RPP=196.271;RPPR=317.874;RPR=89;RUN=1;SAF=89;SAP=196.271;SAR=0;SRF=145;SRP=317.874;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|1:88:49,39:49:1958:39:1547:-112.984,0,-149.929 0|1:96:57,39:57:2265:39:1539:-109.86,0,-175.13 0|1:50:39,11:39:1553:11:439:-24.815,0,-124.965 dDocent_Contig_5325 1 . N G 77.8076 . AB=0;ABP=0;AC=2;AF=1;AN=2;AO=2;CIGAR=1X;DP=2;DPB=2;DPRA=0;EPP=7.35324;EPPR=0;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=0;NS=1;NUMALT=1;ODDS=5.99146;PAIRED=1;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=82;QR=0;RO=0;RPL=0;RPP=7.35324;RPPR=0;RPR=2;RUN=1;SAF=2;SAP=7.35324;SAR=0;SRF=0;SRP=0;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL ./.:.:.:.:.:.:.:. ./.:.:.:.:.:.:.:. 1/1:2:0,2:0:0:2:82:-7.77968,-0.60206,0 dDocent_Contig_5326 28 . T A 61.0282 . AB=0.109756;ABP=111.478;AC=1;AF=0.166667;AN=6;AO=9;CIGAR=1X;DP=192;DPB=192;DPRA=1.49091;EPP=22.5536;EPPR=400.39;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=0.967213;PAO=0;PQA=0;PQR=0;PRO=0;QA=355;QR=7321;RO=183;RPL=0;RPP=22.5536;RPPR=400.39;RPR=9;RUN=1;SAF=9;SAP=22.5536;SAR=0;SRF=183;SRP=400.39;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:82:73,9:73:2917:9:355:-7.6257,0,-237.94 0/0:53:53,0:53:2120:0:0:0,-15.9546,-190.974 0/0:57:57,0:57:2284:0:0:0,-17.1587,-205.72 dDocent_Contig_5327 12 . T C 270.703 . AB=0.454545;ABP=3.40511;AC=2;AF=0.333333;AN=6;AO=10;CIGAR=1X;DP=31;DPB=31;DPRA=1.22222;EPP=24.725;EPPR=48.6112;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=0;PAIREDR=0.952381;PAO=0;PQA=0;PQR=0;PRO=0;QA=405;QR=837;RO=21;RPL=0;RPP=24.725;RPPR=48.6112;RPR=10;RUN=1;SAF=10;SAP=24.725;SAR=0;SRF=21;SRP=48.6112;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:9:9,0:9:350:0:0:0,-2.70927,-31.8546 0/1:12:5,7:5:205:7:283:-22.231,0,-15.2226 0/1:10:7,3:7:282:3:122:-8.36219,0,-22.7418 dDocent_Contig_5328 32 . T A 1208.45 . AB=0.195046;ABP=263.916;AC=3;AF=0.5;AN=6;AO=63;CIGAR=1X;DP=323;DPB=323;DPRA=0;EPP=139.813;EPPR=567.593;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=1.38778e-17;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=2474;QR=10351;RO=260;RPL=0;RPP=139.813;RPPR=567.593;RPR=63;RUN=1;SAF=63;SAP=139.813;SAR=0;SRF=260;SRP=567.593;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:171:134,37:134:5303:37:1429:-77.3813,0,-425.646 0/1:73:60,13:60:2403:13:515:-24.7215,0,-194.443 0/1:79:66,13:66:2645:13:530:-24.2652,0,-214.394 dDocent_Contig_5329 15 . G A 2345.1 . AB=0.516129;ABP=3.22044;AC=4;AF=0.666667;AN=6;AO=74;CIGAR=1X;DP=119;DPB=119;DPRA=0;EPP=163.699;EPPR=100.727;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=2946;QR=1817;RO=45;RPL=0;RPP=163.699;RPPR=100.727;RPR=74;RUN=1;SAF=74;SAP=163.699;SAR=0;SRF=45;SRP=100.727;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:55:29,26:29:1170:26:1054:-78.592,0,-89.0176 0/1:38:16,22:16:647:22:871:-67.2614,0,-47.1242 1/1:26:0,26:0:0:26:1021:-92.1796,-7.82678,0 dDocent_Contig_5330 109 . C T 37.3316 . AB=0.175;ABP=39.7082;AC=3;AF=0.5;AN=6;AO=7;CIGAR=1X;DP=40;DPB=40;DPRA=0;EPP=18.2106;EPPR=74.6689;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=222;QR=1146;RO=33;RPL=0;RPP=18.2106;RPPR=74.6689;RPR=7;RUN=1;SAF=0;SAP=18.2106;SAR=7;SRF=0;SRP=74.6689;SRR=33;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:21:18,3:18:628:3:107:-3.66054,0,-50.5254 0/1:11:9,2:9:311:2:72:-3.52539,0,-25.014 0/1:8:6,2:6:207:2:43:-1.67512,0,-16.5598 dDocent_Contig_5331 146 . C G 72.1846 . AB=0.171429;ABP=35.8306;AC=2;AF=0.333333;AN=6;AO=6;CIGAR=1X;DP=43;DPB=43;DPRA=2.1875;EPP=16.0391;EPPR=83.3548;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=3.46945e-18;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=228;QR=1400;RO=37;RPL=0;RPP=16.0391;RPPR=83.3548;RPR=6;RUN=1;SAF=0;SAP=16.0391;SAR=6;SRF=0;SRP=83.3548;SRR=37;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:14:12,2:12:453:2:78:-3.18888,0,-36.893 0/1:21:17,4:17:681:4:150:-7.54318,0,-55.2987 0/0:8:8,0:8:266:0:0:0,-2.40824,-24.2493 dDocent_Contig_5332 12 . T A 5389.95 . AB=0.759825;ABP=137.291;AC=3;AF=0.5;AN=6;AO=174;CIGAR=1X;DP=229;DPB=229;DPRA=0;EPP=314.554;EPPR=122.441;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=1.38778e-17;PAIRED=0.87931;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=6810;QR=2165;RO=55;RPL=0;RPP=380.846;RPPR=122.441;RPR=174;RUN=1;SAF=166;SAP=314.554;SAR=8;SRF=55;SRP=122.441;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:99:16,83:16:637:83:3273:-264.854,0,-27.8641 0/1:76:18,58:18:709:58:2257:-180.444,0,-41.2595 0/1:54:21,33:21:819:33:1280:-99.2201,0,-57.7718 dDocent_Contig_5333 107 . N A 42.4216 . AB=0;ABP=0;AC=2;AF=1;AN=2;AO=2;CIGAR=1X;DP=3;DPB=3;DPRA=0;EPP=7.35324;EPPR=0;GTI=0;LEN=1;MEANALT=2;MQM=49;MQMR=0;NS=1;NUMALT=1;ODDS=5.99146;PAIRED=1;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=46;QR=0;RO=0;RPL=0;RPP=7.35324;RPPR=0;RPR=2;RUN=1;SAF=0;SAP=7.35324;SAR=2;SRF=0;SRP=0;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL ./.:.:.:.:.:.:.:. 1/1:3:0,2:0:0:2:46:-4.24105,-0.60206,0 ./.:.:.:.:.:.:.:. dDocent_Contig_5334 10 . A G 5389.44 . AB=0.505556;ABP=3.10681;AC=3;AF=0.5;AN=6;AO=182;CIGAR=1X;DP=360;DPB=360;DPRA=0;EPP=398.218;EPPR=389.532;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=7249;QR=7097;RO=178;RPL=0;RPP=398.218;RPPR=389.532;RPR=182;RUN=1;SAF=182;SAP=398.218;SAR=0;SRF=178;SRP=389.532;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:174:71,103:71:2835:103:4139:-320.089,0,-202.874 0/1:105:63,42:63:2500:42:1648:-116.936,0,-193.545 0/1:81:44,37:44:1762:37:1462:-107.443,0,-134.413 dDocent_Contig_5335 8 . C T 315.439 . AB=0.151724;ABP=155.777;AC=1;AF=0.166667;AN=6;AO=33;CIGAR=1X;DP=358;DPB=358;DPRA=0;EPP=74.6689;EPPR=697.881;GTI=0;LEN=1;MEANALT=1.66667;MQM=60;MQMR=59.1;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=0.99375;PAO=0;PQA=0;PQR=0;PRO=0;QA=1267;QR=12302;RO=320;RPL=0;RPP=74.6689;RPPR=697.881;RPR=33;RUN=1;SAF=33;SAP=74.6689;SAR=0;SRF=320;SRP=697.881;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:145:121,22:121:4669:22:846:-33.0668,0,-373.84 0/0:107:102,5:102:3922:5:192:0,-14.5606,-327.762 0/0:106:97,6:97:3711:6:229:0,-10.4174,-310.112 dDocent_Contig_5337 35 . T A 547.393 . AB=0.257732;ABP=52.4617;AC=3;AF=0.5;AN=6;AO=25;CIGAR=1X;DP=97;DPB=97;DPRA=0;EPP=57.2971;EPPR=159.356;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=0.84;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=982;QR=2871;RO=72;RPL=0;RPP=57.2971;RPPR=159.356;RPR=25;RUN=1;SAF=25;SAP=57.2971;SAR=0;SRF=72;SRP=159.356;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:53:40,13:40:1599:13:509:-30.1947,0,-128.184 0/1:16:10,6:10:404:6:230:-16.2487,0,-31.9025 0/1:28:22,6:22:868:6:243:-13.8188,0,-69.999 dDocent_Contig_5338 15 . G A 6693.33 . AB=0.798851;ABP=137.991;AC=6;AF=1;AN=6;AO=210;CIGAR=1X1M;DP=251;DPB=251;DPRA=0;EPP=459.02;EPPR=48.6112;GTI=0;LEN=1;MEANALT=1.66667;MQM=60;MQMR=60;NS=3;NUMALT=2;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=8039;QR=797;RO=21;RPL=0;RPP=459.02;RPPR=48.6112;RPR=210;RUN=1;SAF=210;SAP=459.02;SAR=0;SRF=21;SRP=48.6112;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 1|1:77:6,0,71:6:218:0,71:0,2699:-223.107,-224.913,-242.714,-3.20854,-21.3731,0 1|1:106:12,13,81:12:460:13,81:504,3097:-254.139,-216.349,-250.189,-3.65298,0,-17.021 1|1:68:3,7,58:3:119:7,58:269,2243:-195.609,-174.43,-182.119,-12.2747,0,-4.6145 dDocent_Contig_5339 51 . C A 419.781 . AB=0.176056;ABP=132.442;AC=2;AF=0.333333;AN=6;AO=25;CIGAR=1X;DP=152;DPB=152;DPRA=7.1;EPP=57.2971;EPPR=278.787;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=6.93889e-18;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=973;QR=5064;RO=127;RPL=25;RPP=57.2971;RPPR=278.787;RPR=0;RUN=1;SAF=25;SAP=57.2971;SAR=0;SRF=127;SRP=278.787;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:103:90,13:90:3608:13:519:-16.0482,0,-293.735 0/0:10:10,0:10:395:0:0:0,-3.0103,-35.9078 0/1:39:27,12:27:1061:12:454:-29.4528,0,-84.0423 dDocent_Contig_5340 141 . T C 114.373 . AB=0.173913;ABP=45.4956;AC=1;AF=0.166667;AN=6;AO=8;CIGAR=1X;DP=71;DPB=71;DPRA=3.68;EPP=20.3821;EPPR=139.813;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=294;QR=2254;RO=63;RPL=0;RPP=20.3821;RPPR=139.813;RPR=8;RUN=1;SAF=0;SAP=20.3821;SAR=8;SRF=0;SRP=139.813;SRR=63;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:46:38,8:38:1314:8:294:-12.9602,0,-104.677 0/0:20:20,0:20:757:0:0:0,-6.0206,-68.4525 0/0:5:5,0:5:183:0:0:0,-1.50515,-16.8248 dDocent_Contig_5341 80 . T C 1733.96 . AB=0.767442;ABP=56.4386;AC=3;AF=0.5;AN=6;AO=66;CIGAR=1X;DP=86;DPB=86;DPRA=0;EPP=146.327;EPPR=46.4397;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=2265;QR=676;RO=20;RPL=66;RPP=146.327;RPPR=46.4397;RPR=0;RUN=1;SAF=66;SAP=146.327;SAR=0;SRF=20;SRP=46.4397;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:49:11,38:11:378:38:1302:-102.73,0,-19.6006 0/1:17:5,12:5:175:12:413:-32.3829,0,-10.9762 0/1:20:4,16:4:123:16:550:-43.8052,0,-5.35358 dDocent_Contig_5342 8 . C A 2167.09 . AB=0.403941;ABP=19.2803;AC=3;AF=0.5;AN=6;AO=82;CIGAR=1X;DP=203;DPB=203;DPRA=0;EPP=181.071;EPPR=265.758;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=3138;QR=4634;RO=121;RPL=0;RPP=181.071;RPPR=265.758;RPR=82;RUN=1;SAF=82;SAP=181.071;SAR=0;SRF=121;SRP=265.758;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:106:78,28:78:2985:28:1066:-64.3353,0,-236.904 0/1:43:17,26:17:645:26:992:-76.6465,0,-45.4411 0/1:54:26,28:26:1004:28:1080:-81.2497,0,-74.4148 dDocent_Contig_5343 107 . N C 34.2092 . AB=0;ABP=0;AC=2;AF=1;AN=2;AO=2;CIGAR=1X;DP=2;DPB=2;DPRA=0;EPP=7.35324;EPPR=0;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=0;NS=1;NUMALT=1;ODDS=5.99146;PAIRED=1;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=36;QR=0;RO=0;RPL=0;RPP=7.35324;RPPR=0;RPR=2;RUN=1;SAF=0;SAP=7.35324;SAR=2;SRF=0;SRP=0;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 1/1:2:0,2:0:0:2:36:-3.41967,-0.60206,0 ./.:.:.:.:.:.:.:. ./.:.:.:.:.:.:.:. dDocent_Contig_5344 16 . G A 12483 . AB=0.289058;ABP=663.525;AC=3;AF=0.5;AN=6;AO=494;CIGAR=1X;DP=1709;DPB=1709;DPRA=0;EPP=1075.72;EPPR=2637.01;GTI=0;LEN=1;MEANALT=1.66667;MQM=59.0911;MQMR=59.1237;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=0.984336;PAO=0;PQA=0;PQR=0;PRO=0;QA=19702;QR=48271;RO=1213;RPL=0;RPP=1075.72;RPPR=2637.01;RPR=494;RUN=1;SAF=494;SAP=1075.72;SAR=0;SRF=1213;SRP=2637.01;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:655:457,197:457:18166:197:7838:-506.334,0,-1420.82 0/1:383:280,103:280:11109:103:4106:-252.277,0,-877.544 0/1:671:476,194:476:18996:194:7758:-495.209,0,-1495.78 dDocent_Contig_5345 10 . C T 210.468 . AB=0.150538;ABP=101.661;AC=2;AF=0.333333;AN=6;AO=14;CIGAR=1X;DP=125;DPB=125;DPRA=1.45312;EPP=33.4109;EPPR=235.436;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=59.9009;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=0.981982;PAO=0;PQA=0;PQR=0;PRO=0;QA=565;QR=4453;RO=111;RPL=0;RPP=33.4109;RPPR=244.044;RPR=14;RUN=1;SAF=14;SAP=33.4109;SAR=0;SRF=110;SRP=235.436;SRR=1;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:59:48,11:48:1927:11:444:-22.5539,0,-155.865 0/1:34:31,3:31:1229:3:121:-1.04497,0,-100.597 0/0:32:32,0:32:1297:0:0:0,-9.63296,-116.991 dDocent_Contig_5346 13 . C A 4549.72 . AB=0.47678;ABP=4.52294;AC=3;AF=0.5;AN=6;AO=154;CIGAR=1X;DP=323;DPB=323;DPRA=0;EPP=337.417;EPPR=369.989;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=1.38778e-17;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=6191;QR=6808;RO=169;RPL=0;RPP=337.417;RPPR=369.989;RPR=154;RUN=1;SAF=154;SAP=337.417;SAR=0;SRF=169;SRP=369.989;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:171:84,87:84:3398:87:3508:-264.267,0,-254.375 0/1:71:50,21:50:1994:21:833:-53.9081,0,-158.277 0/1:81:35,46:35:1416:46:1850:-142.32,0,-103.305 dDocent_Contig_5347 12 . T A 2954.21 . AB=0.55;ABP=6.91895;AC=3;AF=0.5;AN=6;AO=99;CIGAR=1X1M1X1M1X;DP=180;DPB=180;DPRA=0;EPP=217.986;EPPR=178.9;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=3937;QR=3214;RO=81;RPL=0;RPP=217.986;RPPR=178.9;RPR=99;RUN=1;SAF=99;SAP=217.986;SAR=0;SRF=81;SRP=178.9;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|1:89:41,48:41:1614:48:1906:-144.958,0,-118.705 0|1:18:6,12:6:238:12:472:-37.4081,0,-16.374 0|1:73:34,39:34:1362:39:1559:-118.578,0,-100.867 dDocent_Contig_5348 10 . C A 21830.5 . AB=0.473616;ABP=12.2918;AC=3;AF=0.5;AN=6;AO=727;CIGAR=1X3M;DP=1535;DPB=1535;DPRA=0;EPP=1581.67;EPPR=1407.95;GTI=0;LEN=1;MEANALT=3;MQM=59.8735;MQMR=60;NS=3;NUMALT=2;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=28953;QR=25764;RO=647;RPL=0;RPP=1581.67;RPPR=1407.95;RPR=727;RUN=1;SAF=727;SAP=1581.67;SAR=0;SRF=647;SRP=1407.95;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|1:841:349,101,390:349:13897:101,390:3988,15531:-1173.45,-950.378,-2064.24,0,-816.141,-1026.87 0|1:273:120,15,138:120:4768:15,138:599,5515:-417.779,-404.566,-792.582,0,-343.194,-350.989 0|1:421:178,40,199:178:7099:40,199:1580,7907:-597.344,-520.918,-1093.49,0,-454.607,-524.711 dDocent_Contig_5350 160 . T C 177.451 . AB=0.195652;ABP=40.0197;AC=1;AF=0.166667;AN=6;AO=9;CIGAR=1X;DP=95;DPB=95;DPRA=1.87755;EPP=22.5536;EPPR=185.414;GTI=0;LEN=1;MEANALT=2;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=365;QR=3316;RO=84;RPL=9;RPP=22.5536;RPPR=185.414;RPR=0;RUN=1;SAF=0;SAP=22.5536;SAR=9;SRF=0;SRP=185.414;SRR=84;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:46:36,9:36:1412:9:365:-19.268,0,-113.383 0/0:9:9,0:9:365:0:0:0,-2.70927,-33.2149 0/0:40:39,0:39:1539:0:0:0,-11.7402,-138.344 dDocent_Contig_5351 21 . G A 902.157 . AB=0.212963;ABP=157.587;AC=3;AF=0.5;AN=6;AO=46;CIGAR=1X;DP=216;DPB=216;DPRA=0;EPP=102.898;EPPR=369.989;GTI=0;LEN=1;MEANALT=1.33333;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=0.586957;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=1776;QR=6800;RO=169;RPL=0;RPP=102.898;RPPR=369.989;RPR=46;RUN=1;SAF=46;SAP=102.898;SAR=0;SRF=169;SRP=369.989;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:116:97,19:97:3913:19:703:-28.6635,0,-317.232 0/1:25:21,4:21:840:4:155:-6.7981,0,-68.39 0/1:75:51,23:51:2047:23:918:-60.277,0,-161.764 dDocent_Contig_5352 35 . A T 7247.47 . AB=0.737864;ABP=154.866;AC=3;AF=0.5;AN=6;AO=228;CIGAR=1X;DP=309;DPB=309;DPRA=0;EPP=498.106;EPPR=178.9;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=9145;QR=3247;RO=81;RPL=0;RPP=498.106;RPPR=178.9;RPR=228;RUN=1;SAF=228;SAP=498.106;SAR=0;SRF=81;SRP=178.9;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:172:35,137:35:1391:137:5497:-442.772,0,-73.6712 0/1:49:18,31:18:720:31:1246:-97.6569,0,-50.3763 0/1:88:28,60:28:1136:60:2402:-189.841,0,-76.0295 dDocent_Contig_5353 36 . T A 1207.45 . AB=0.196078;ABP=125.762;AC=3;AF=0.5;AN=6;AO=30;CIGAR=1M1X7M;DP=153;DPB=153.444;DPRA=0;EPP=68.1545;EPPR=163.699;GTI=0;LEN=1;MEANALT=3;MQM=60;MQMR=60;NS=3;NUMALT=3;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=1101;QR=2815;RO=74;RPL=0;RPP=68.1545;RPPR=163.699;RPR=30;RUN=1;SAF=30;SAP=68.1545;SAR=0;SRF=74;SRP=163.699;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|1:77:40,0,23,14:40:1528:0,23,14:0,904,509:-62.3352,-74.3764,-199.738,0,-125.375,-118.451,-32.8204,-158.175,-83.8129,-153.961 0|1:38:21,3,11,3:21:782:3,11,3:117,424,111:-28.499,-25.2391,-88.3374,0,-54.4197,-60.6905,-25.7435,-80.1612,-54.9224,-88.8395 0|1:38:13,1,10,13:13:505:1,10,13:39,380,481:-35.4342,-36.1531,-77.3532,-8.17992,-46.4915,-46.6753,0,-38.3094,-10.3422,-37.5901 dDocent_Contig_5354 21 . T A 2353.45 . AB=0.460674;ABP=5.40136;AC=3;AF=0.5;AN=6;AO=82;CIGAR=1X;DP=178;DPB=178;DPRA=0;EPP=181.071;EPPR=211.472;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=3262;QR=3808;RO=96;RPL=0;RPP=181.071;RPPR=211.472;RPR=82;RUN=1;SAF=82;SAP=181.071;SAR=0;SRF=96;SRP=211.472;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:130:75,55:75:3005:55:2176:-156.89,0,-231.391 0/1:21:9,12:9:358:12:474:-36.6893,0,-26.2618 0/1:27:12,15:12:445:15:612:-47.2893,0,-32.2471 dDocent_Contig_5355 29 . C A 771.188 . AB=0.205882;ABP=79.6505;AC=1;AF=0.166667;AN=6;AO=24;CIGAR=1X2M1X;DP=174;DPB=174;DPRA=0;EPP=55.1256;EPPR=211.472;GTI=0;LEN=1;MEANALT=3.33333;MQM=60;MQMR=60;NS=3;NUMALT=4;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=936;QR=3787;RO=96;RPL=0;RPP=55.1256;RPPR=211.472;RPR=24;RUN=1;SAF=24;SAP=55.1256;SAR=0;SRF=96;SRP=211.472;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|0:72:63,5,3,0,1:63:2480:5,3,0,1:196,106,0,38:0,-2.83166,-205.362,-10.3491,-198.241,-213.453,-18.9649,-206.867,-214.356,-222.982,-15.8481,-203.751,-211.24,-219.866,-219.565 0|1:23:10,2,7,0,4:10:393:2,7,0,4:78,274,0,138:-19.5332,-16.1294,-47.8622,0,-25.9336,-30.2394,-22.5435,-48.4642,-32.3467,-54.8766,-11.3532,-37.2687,-21.154,-43.6802,-42.4761 0|0:79:23,21,14,5,16:23:914:21,14,5,16:827,556,204,605:-61.1085,0,-68.9274,-22.2567,-29.4741,-93.2912,-51.1992,-58.4162,-80.6729,-124.942,-18.4515,-25.6687,-47.9242,-76.8655,-88.8814 dDocent_Contig_5356 21 . T C 10892 . AB=0.88;ABP=253.859;AC=5;AF=0.833333;AN=6;AO=328;CIGAR=1X;DP=362;DPB=362;DPRA=0;EPP=715.253;EPPR=76.8404;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=1.38778e-17;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=13192;QR=1361;RO=34;RPL=0;RPP=715.253;RPPR=76.8404;RPR=328;RUN=1;SAF=328;SAP=715.253;SAR=0;SRF=34;SRP=76.8404;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:200:24,176:24:968:176:7059:-574.744,0,-27.2127 1/1:68:3,65:3:123:65:2617:-224.185,-9.00525,0 1/1:94:7,87:7:270:87:3516:-291.793,-3.6369,0 dDocent_Contig_5357 21 . C T 533.006 . AB=0.285714;ABP=33.7211;AC=3;AF=0.5;AN=6;AO=22;CIGAR=1M2D2X2M1X;DP=77;DPB=71.5;DPRA=0;EPP=50.7827;EPPR=111.584;GTI=0;LEN=1;MEANALT=1.66667;MQM=60;MQMR=60;NS=3;NUMALT=2;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=872;QR=1955;RO=50;RPL=0;RPP=50.7827;RPPR=111.584;RPR=22;RUN=1;SAF=22;SAP=50.7827;SAR=0;SRF=50;SRP=111.584;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|1:40:25,11,4:25:981:11,4:437,161:-28.4481,0,-77.3585,-22.7033,-67.3993,-102.174 0|1:12:11,1,0:11:422:1,0:39,0:-0.284205,0,-34.7166,-3.59553,-35.0177,-38.2241 0|1:25:14,10,1:14:552:10,1:396,40:-28.3727,0,-42.4,-29.2916,-42.1149,-74.4053 dDocent_Contig_5358 8 . C T 170.797 . AB=0.14433;ABP=109.592;AC=2;AF=0.333333;AN=6;AO=14;CIGAR=1X;DP=204;DPB=204;DPRA=0.453271;EPP=33.4109;EPPR=413.419;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=0.989418;PAO=0;PQA=0;PQR=0;PRO=0;QA=544;QR=7268;RO=189;RPL=0;RPP=33.4109;RPPR=413.419;RPR=14;RUN=1;SAF=14;SAP=33.4109;SAR=0;SRF=189;SRP=413.419;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:107:106,0:106:4072:0:0:0,-31.9092,-366.175 0/1:41:37,4:37:1425:4:156:-2.07506,0,-116.185 0/1:56:46,10:46:1771:10:388:-18.4202,0,-142.787 dDocent_Contig_5359 15 . G A 363.695 . AB=0.210526;ABP=72.1546;AC=3;AF=0.5;AN=6;AO=20;CIGAR=1X;DP=95;DPB=95;DPRA=0;EPP=46.4397;EPPR=165.871;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=771;QR=2851;RO=75;RPL=0;RPP=46.4397;RPPR=165.871;RPR=20;RUN=1;SAF=20;SAP=46.4397;SAR=0;SRF=75;SRP=165.871;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:47:34,13:34:1299:13:501:-31.288,0,-103.045 0/1:26:22,4:22:847:4:149:-5.94648,0,-68.719 0/1:22:19,3:19:705:3:121:-4.65754,0,-57.1458 dDocent_Contig_5360 20 . C T 67.2936 . AB=0.190476;ABP=20.4855;AC=1;AF=0.166667;AN=6;AO=4;CIGAR=2X;DP=80;DPB=80;DPRA=0.711864;EPP=11.6962;EPPR=163.699;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=3.46945e-18;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=161;QR=2964;RO=74;RPL=0;RPP=11.6962;RPPR=163.699;RPR=4;RUN=1;SAF=4;SAP=11.6962;SAR=0;SRF=74;SRP=163.699;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|0:41:39,0:39:1575:0:0:0,-11.7402,-141.577 0|0:18:18,0:18:704:0:0:0,-5.41854,-63.6851 0|1:21:17,4:17:685:4:161:-8.55327,0,-55.6578 dDocent_Contig_5362 13 . G A 104.017 . AB=0;ABP=0;AC=2;AF=1;AN=2;AO=3;CIGAR=1X;DP=3;DPB=3;DPRA=0;EPP=9.52472;EPPR=0;GTI=0;LEN=1;MEANALT=1;MQM=40;MQMR=0;NS=1;NUMALT=1;ODDS=6.68461;PAIRED=1;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=121;QR=0;RO=0;RPL=0;RPP=9.52472;RPPR=0;RPR=3;RUN=1;SAF=3;SAP=9.52472;SAR=0;SRF=0;SRP=0;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL ./.:.:.:.:.:.:.:. 1/1:3:0,3:0:0:3:121:-10.4012,-0.90309,0 ./.:.:.:.:.:.:.:. dDocent_Contig_5363 130 . T A 2562.28 . AB=0.52809;ABP=4.23023;AC=3;AF=0.5;AN=6;AO=94;CIGAR=1X1M1X1M1X;DP=178;DPB=178;DPRA=0;EPP=207.129;EPPR=183.243;GTI=0;LEN=1;MEANALT=1.33333;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=3494;QR=2997;RO=83;RPL=0;RPP=207.129;RPPR=183.243;RPR=94;RUN=1;SAF=0;SAP=207.129;SAR=94;SRF=0;SRP=183.243;SRR=83;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|1:105:54,51:54:1950:51:1895:-139.193,0,-144.151 0|1:30:10,20:10:358:20:732:-57.1722,0,-23.5301 0|1:43:19,23:19:689:23:867:-65.3859,0,-49.3726 dDocent_Contig_5365 12 . G A 796.641 . AB=0.201005;ABP=157.534;AC=2;AF=0.333333;AN=6;AO=42;CIGAR=1X;DP=232;DPB=232;DPRA=0;EPP=94.2121;EPPR=415.59;GTI=0;LEN=1;MEANALT=1;MQM=59.9286;MQMR=58.2316;NS=3;NUMALT=1;ODDS=0;PAIRED=0.690476;PAIREDR=0.931579;PAO=0;PQA=0;PQR=0;PRO=0;QA=1662;QR=7477;RO=190;RPL=0;RPP=94.2121;RPPR=415.59;RPR=42;RUN=1;SAF=42;SAP=94.2121;SAR=0;SRF=190;SRP=415.59;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:147:114,33:114:4527:33:1310:-73.91,0,-361.741 0/0:33:31,2:31:1164:2:79:0,-2.43675,-97.2523 0/1:52:45,7:45:1786:7:273:-9.27697,0,-143.289 dDocent_Contig_5366 11 . G A 5272.37 . AB=0.0695652;ABP=188.076;AC=3;AF=0.5;AN=6;AO=8;CIGAR=2X10M;DP=281;DPB=281;DPRA=0;EPP=20.3821;EPPR=189.757;GTI=0;LEN=1;MEANALT=2.5;MQM=60;MQMR=60;NS=3;NUMALT=3;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=321;QR=3381;RO=86;RPL=0;RPP=20.3821;RPPR=189.757;RPR=8;RUN=1;SAF=8;SAP=20.3821;SAR=0;SRF=86;SRP=189.757;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|1:166:57,4,100,0:57:2248:4,100,0:153,3936,0:-306.635,-311.24,-494.995,0,-172.432,-154.883,-323.794,-496.199,-184.986,-508.753 0|1:47:8,4,30,5:8:312:4,30,5:161,1154,203:-92.3059,-81.4433,-105.886,0,-12.369,-16.6089,-77.9692,-90.3455,-8.89395,-102.111 0|1:68:21,0,44,3:21:821:0,44,3:0,1706,118:-133.818,-140.14,-207.637,0,-67.4941,-54.2487,-130.433,-197.931,-57.7876,-197.027 dDocent_Contig_5367 8 . T C 1556.16 . AB=0.518072;ABP=3.24576;AC=4;AF=0.666667;AN=6;AO=53;CIGAR=1X;DP=93;DPB=93;DPRA=0;EPP=118.098;EPPR=89.8692;GTI=0;LEN=1;MEANALT=1;MQM=57.5849;MQMR=60;NS=3;NUMALT=1;ODDS=6.93889e-18;PAIRED=0.943396;PAIREDR=0.975;PAO=0;PQA=0;PQR=0;PRO=0;QA=2044;QR=1522;RO=40;RPL=0;RPP=118.098;RPPR=89.8692;RPR=53;RUN=1;SAF=53;SAP=118.098;SAR=0;SRF=40;SRP=89.8692;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:61:29,32:29:1099:32:1236:-92.3326,0,-80.8485 1/1:10:0,10:0:0:10:381:-34.6443,-3.0103,0 0/1:22:11,11:11:423:11:427:-32.1623,0,-31.801 dDocent_Contig_5368 111 . T C 105.607 . AB=0.666667;ABP=3.73412;AC=1;AF=0.25;AN=4;AO=2;CIGAR=1X3M1X;DP=4;DPB=4;DPRA=3;EPP=7.35324;EPPR=0;GTI=0;LEN=1;MEANALT=2;MQM=60;MQMR=0;NS=2;NUMALT=2;ODDS=0;PAIRED=1;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=68;QR=0;RO=0;RPL=0;RPP=7.35324;RPPR=0;RPR=2;RUN=1;SAF=0;SAP=7.35324;SAR=2;SRF=0;SRP=0;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 1|0:3:0,2,1:0:0:2,1:68,35:-8.70693,-3.1976,-2.59554,-5.85587,0,-5.55484 0|0:1:0,0,1:0:0:0,1:0,35:-3.49863,-3.49863,-3.49863,-0.30103,-0.30103,0 .:.:.:.:.:.:.:. dDocent_Contig_5369 107 . N A 170.451 . AB=0;ABP=0;AC=6;AF=1;AN=6;AO=12;CIGAR=1X;DP=12;DPB=12;DPRA=0;EPP=29.068;EPPR=0;GTI=0;LEN=1;MEANALT=1;MQM=15;MQMR=0;NS=3;NUMALT=1;ODDS=0;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=397;QR=0;RO=0;RPL=0;RPP=29.068;RPPR=0;RPR=12;RUN=1;SAF=0;SAP=29.068;SAR=12;SRF=0;SRP=0;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 1/1:2:0,2:0:0:2:63:-2.82939,-0.60206,0 1/1:7:0,7:0:0:7:230:-9.55056,-2.10721,0 1/1:3:0,3:0:0:3:104:-4.18728,-0.90309,0 dDocent_Contig_5370 27 . A G 388.482 . AB=0.198113;ABP=86.9193;AC=3;AF=0.5;AN=6;AO=21;CIGAR=1X;DP=106;DPB=106;DPRA=0;EPP=48.6112;EPPR=185.414;GTI=0;LEN=1;MEANALT=1.33333;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=834;QR=3354;RO=84;RPL=0;RPP=48.6112;RPPR=185.414;RPR=21;RUN=1;SAF=21;SAP=48.6112;SAR=0;SRF=84;SRP=185.414;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:44:35,9:35:1405:9:350:-18.6092,0,-113.453 0/1:40:31,8:31:1227:8:325:-17.6922,0,-98.7937 0/1:22:18,4:18:722:4:159:-8.06967,0,-58.6825 dDocent_Contig_5371 10 . C A 1060.19 . AB=0.642857;ABP=12.937;AC=3;AF=0.5;AN=6;AO=36;CIGAR=1X1M1X;DP=56;DPB=56;DPRA=0;EPP=81.1833;EPPR=46.4397;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=1414;QR=804;RO=20;RPL=0;RPP=81.1833;RPPR=46.4397;RPR=36;RUN=1;SAF=36;SAP=81.1833;SAR=0;SRF=20;SRP=46.4397;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|1:32:7,25:7:285:25:984:-79.2308,0,-16.3914 0|1:6:5,1:5:199:1:40:-2.1895,0,-16.4819 0|1:18:8,10:8:320:10:390:-30.037,0,-23.7482 dDocent_Contig_5372 8 . T C 43574.9 . AB=0;ABP=0;AC=6;AF=1;AN=6;AO=1463;CIGAR=1X;DP=1579;DPB=1579;DPRA=0;EPP=3179.87;EPPR=233.186;GTI=0;LEN=1;MEANALT=1.66667;MQM=48.5789;MQMR=51.9623;NS=3;NUMALT=1;ODDS=0;PAIRED=0.298018;PAIREDR=0.471698;PAO=0;PQA=0;PQR=0;PRO=0;QA=56140;QR=4016;RO=106;RPL=0;RPP=3179.87;RPPR=233.186;RPR=1463;RUN=1;SAF=1463;SAP=3179.87;SAR=0;SRF=106;SRP=233.186;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 1/1:829:58,762:58:2215:762:29305:-2275.36,-56.1228,0 1/1:322:24,297:24:890:297:11344:-865.431,-19.9467,0 1/1:428:24,404:24:911:404:15491:-1216.22,-48.9786,0 dDocent_Contig_5373 18 . G C 1961.24 . AB=0.0508475;ABP=106.394;AC=0;AF=0;AN=6;AO=3;CIGAR=1X3M1X2M;DP=130;DPB=130;DPRA=0;EPP=9.52472;EPPR=37.7539;GTI=0;LEN=1;MEANALT=3.5;MQM=60;MQMR=60;NS=3;NUMALT=4;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=121;QR=631;RO=16;RPL=0;RPP=9.52472;RPPR=37.7539;RPR=3;RUN=1;SAF=3;SAP=9.52472;SAR=0;SRF=16;SRP=37.7539;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|0:71:10,0,19,28,14:10:394:0,19,28,14:0,735,843,367:-88.4129,-91.4232,-123.849,-32.3162,-64.7529,-59.0334,-26.6755,-59.106,0,-50.6771,-64.2793,-96.7054,-37.6098,-31.9883,-92.491 0|0:25:6,2,7,7,3:6:237:2,7,7,3:80,273,275,32:-23.3541,-18.5631,-37.4792,-3.12013,-16.0513,-20.5414,-2.51338,-15.4459,0,-19.9365,-23.9235,-36.8361,-21.4154,-20.8098,-42.5241 0|0:34:0,1,20,13,0:0:0:1,20,13,0:41,784,363,0:-89.8794,-86.4931,-86.1921,-27.1629,-23.7687,-21.1423,-62.6283,-59.2429,0,-58.7149,-89.8794,-86.4931,-27.1629,-62.6283,-89.8794 dDocent_Contig_5374 82 . A T 116.375 . AB=0.205128;ABP=32.4644;AC=2;AF=0.333333;AN=6;AO=8;CIGAR=1X;DP=49;DPB=49;DPRA=1.95;EPP=20.3821;EPPR=92.0407;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=3.46945e-18;PAIRED=1;PAIREDR=0.902439;PAO=0;PQA=0;PQR=0;PRO=0;QA=291;QR=1496;RO=41;RPL=8;RPP=20.3821;RPPR=92.0407;RPR=0;RUN=1;SAF=8;SAP=20.3821;SAR=0;SRF=41;SRP=92.0407;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:28:22,6:22:788:6:221:-11.818,0,-62.8127 0/0:10:10,0:10:377:0:0:0,-3.0103,-34.2825 0/1:11:9,2:9:331:2:70:-3.33579,0,-26.8295 dDocent_Contig_5375 57 . A G 6388.52 . AB=0.883212;ABP=177.758;AC=4;AF=0.666667;AN=6;AO=204;CIGAR=1X;DP=229;DPB=229;DPRA=0;EPP=445.991;EPPR=52.9542;GTI=0;LEN=1;MEANALT=1.66667;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=7894;QR=886;RO=23;RPL=204;RPP=445.991;RPPR=52.9542;RPR=0;RUN=1;SAF=204;SAP=445.991;SAR=0;SRF=23;SRP=52.9542;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:102:11,90:11:431:90:3471:-281.709,0,-8.39518 0/1:35:4,31:4:156:31:1197:-97.4775,0,-3.87889 1/1:92:8,83:8:299:83:3226:-263.186,-0.245853,0 dDocent_Contig_5376 41 . A G 46.8597 . AB=0.125;ABP=61.6401;AC=2;AF=0.333333;AN=6;AO=6;CIGAR=1X1M2X2M2X;DP=57;DPB=57;DPRA=2.66667;EPP=4.45795;EPPR=113.755;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=238;QR=1975;RO=51;RPL=2;RPP=4.45795;RPPR=113.755;RPR=4;RUN=1;SAF=6;SAP=16.0391;SAR=0;SRF=51;SRP=113.755;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|1:40:35,5:35:1354:5:198:-6.15618,0,-110.092 0|0:9:9,0:9:352:0:0:0,-2.70927,-32.0399 0|1:8:7,1:7:269:1:40:-1.58744,0,-22.1628 dDocent_Contig_5377 35 . G T 54.9923 . AB=0.148148;ABP=32.0437;AC=1;AF=0.166667;AN=6;AO=4;CIGAR=1X;DP=49;DPB=49;DPRA=2.45455;EPP=11.6962;EPPR=100.727;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=0;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=164;QR=1792;RO=45;RPL=0;RPP=11.6962;RPPR=100.727;RPR=4;RUN=1;SAF=4;SAP=11.6962;SAR=0;SRF=45;SRP=100.727;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:27:23,4:23:909:4:164:-7.02209,0,-73.981 0/0:16:16,0:16:641:0:0:0,-4.81648,-58.0252 0/0:6:6,0:6:242:0:0:0,-1.80618,-22.1569 dDocent_Contig_5378 30 . C A 67.5897 . AB=0.131148;ABP=75.0961;AC=3;AF=0.5;AN=6;AO=8;CIGAR=1X;DP=61;DPB=61;DPRA=0;EPP=20.3821;EPPR=118.098;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=0;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=314;QR=2141;RO=53;RPL=0;RPP=20.3821;RPPR=118.098;RPR=8;RUN=1;SAF=8;SAP=20.3821;SAR=0;SRF=53;SRP=118.098;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:36:32,4:32:1295:4:159:-3.85488,0,-105.976 0/1:11:10,1:10:396:1:41:-0.783237,0,-32.684 0/1:14:11,3:11:450:3:114:-6.41629,0,-36.6414 dDocent_Contig_5379 114 . A G 7595.47 . AB=0.791667;ABP=198.081;AC=4;AF=0.666667;AN=6;AO=290;CIGAR=1X;DP=353;DPB=353;DPRA=0;EPP=632.737;EPPR=139.813;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=9592;QR=1704;RO=63;RPL=0;RPP=632.737;RPPR=139.813;RPR=290;RUN=1;SAF=0;SAP=632.737;SAR=290;SRF=0;SRP=139.813;SRR=63;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:236:51,185:51:1356:185:6183:-485.573,0,-51.2475 0/1:28:4,24:4:99:24:782:-62.257,0,-0.727014 1/1:89:8,81:8:249:81:2627:-213.959,-4.07515,0 dDocent_Contig_5380 36 . G A 1585.32 . AB=0.666667;ABP=22.5536;AC=3;AF=0.5;AN=6;AO=54;CIGAR=1X;DP=81;DPB=81;DPRA=0;EPP=120.27;EPPR=61.6401;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=6.93889e-18;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=2083;QR=1049;RO=27;RPL=0;RPP=120.27;RPPR=61.6401;RPR=54;RUN=1;SAF=54;SAP=120.27;SAR=0;SRF=27;SRP=61.6401;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:36:16,20:16:634:20:752:-57.152,0,-46.5532 0/1:10:2,8:2:80:8:327:-26.7898,0,-4.58149 0/1:35:9,26:9:335:26:1004:-80.1124,0,-19.9562 dDocent_Contig_5381 107 . N T 67.4314 . AB=0;ABP=0;AC=2;AF=1;AN=2;AO=2;CIGAR=1X;DP=2;DPB=2;DPRA=0;EPP=7.35324;EPPR=0;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=0;NS=1;NUMALT=1;ODDS=5.99146;PAIRED=1;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=71;QR=0;RO=0;RPL=0;RPP=7.35324;RPPR=0;RPR=2;RUN=1;SAF=0;SAP=7.35324;SAR=2;SRF=0;SRP=0;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL ./.:.:.:.:.:.:.:. ./.:.:.:.:.:.:.:. 1/1:2:0,2:0:0:2:71:-6.74206,-0.60206,0 dDocent_Contig_5382 20 . G A 62.1524 . AB=0.117647;ABP=89.3583;AC=2;AF=0.333333;AN=6;AO=9;CIGAR=1X;DP=86;DPB=86;DPRA=0;EPP=22.5536;EPPR=170.214;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=368;QR=3032;RO=77;RPL=0;RPP=22.5536;RPPR=170.214;RPR=9;RUN=1;SAF=9;SAP=22.5536;SAR=0;SRF=77;SRP=170.214;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:45:40,5:40:1563:5:205:-5.28866,0,-127.36 0/1:23:20,3:20:792:3:122:-4.4488,0,-64.6739 0/0:18:17,1:17:677:1:41:0,-1.32397,-57.1621 dDocent_Contig_5383 21 . A T 1666.56 . AB=0.264368;ABP=128.881;AC=3;AF=0.5;AN=6;AO=69;CIGAR=1X;DP=261;DPB=261;DPRA=0;EPP=152.842;EPPR=419.933;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=1.38778e-17;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=2776;QR=7596;RO=192;RPL=0;RPP=152.842;RPPR=419.933;RPR=69;RUN=1;SAF=69;SAP=152.842;SAR=0;SRF=192;SRP=419.933;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:129:105,24:105:4147:24:953:-47.2369,0,-334.375 0/1:53:29,24:29:1156:24:974:-72.0023,0,-88.3702 0/1:79:58,21:58:2293:21:849:-52.9395,0,-182.755 dDocent_Contig_5384 39 . T C 495.683 . AB=0.111111;ABP=26.6552;AC=1;AF=0.166667;AN=6;AO=2;CIGAR=2X6M1X1M;DP=85;DPB=85;DPRA=0;EPP=7.35324;EPPR=79.0118;GTI=0;LEN=1;MEANALT=5;MQM=60;MQMR=60;NS=3;NUMALT=6;ODDS=0;PAIRED=0;PAIREDR=0.942857;PAO=0;PQA=0;PQR=0;PRO=0;QA=81;QR=1339;RO=35;RPL=0;RPP=7.35324;RPPR=79.0118;RPR=2;RUN=1;SAF=2;SAP=7.35324;SAR=0;SRF=35;SRP=79.0118;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|1:49:19,6,4,9,3,0,4:19:716:6,4,9,3,0,4:239,150,361,123,0,162:-24.0286,-10.0658,-66.9202,-17.4689,-56.4454,-74.9239,0,-38.9776,-46.3801,-55.9519,-19.594,-58.5723,-65.9742,-48.5068,-77.3521,-29.7481,-68.7264,-76.128,-58.6612,-78.2552,-88.4089,-16.3879,-55.366,-62.768,-45.3004,-64.895,-75.049,-73.8449 0|0:18:6,6,1,1,2,2,0:6:228:6,1,1,2,2,0:240,41,40,79,81,0:-17.9629,0,-16.8779,-16.3842,-15.2983,-34.771,-16.4741,-15.3882,-31.7765,-34.8606,-13.2693,-12.1823,-28.5708,-28.6604,-31.3539,-13.0891,-12.0021,-28.3913,-28.4809,-25.2752,-31.1744,-19.7691,-18.6841,-35.072,-35.1616,-31.9559,-31.7765,-38.457 0|0:18:10,5,3,0,0,0,0:10:395:5,3,0,0,0,0:196,121,0,0,0,0:-13.0997,0,-30.9918,-6.13177,-22.521,-37.7339,-16.11,-32.4969,-38.637,-48.6126,-16.11,-32.4969,-38.637,-48.6126,-48.6126,-16.11,-32.4969,-38.637,-48.6126,-48.6126,-48.6126,-16.11,-32.4969,-38.637,-48.6126,-48.6126,-48.6126,-48.6126 dDocent_Contig_5385 29 . A C 201.024 . AB=0.25;ABP=22.5536;AC=1;AF=0.166667;AN=6;AO=13;CIGAR=1X;DP=132;DPB=132;DPRA=0;EPP=31.2394;EPPR=261.416;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=524;QR=4694;RO=119;RPL=0;RPP=31.2394;RPPR=261.416;RPR=13;RUN=1;SAF=13;SAP=31.2394;SAR=0;SRF=119;SRP=261.416;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:55:53,2:53:2096:2:82:0,-8.77697,-181.048 0/0:41:39,2:39:1554:2:82:0,-4.56255,-132.321 0/1:36:27,9:27:1044:9:360:-21.9263,0,-83.4132 dDocent_Contig_5386 13 . C A 2153.26 . AB=0.707071;ABP=39.8815;AC=3;AF=0.5;AN=6;AO=70;CIGAR=1X;DP=99;DPB=99;DPRA=0;EPP=155.013;EPPR=65.983;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=6.93889e-18;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=2775;QR=1158;RO=29;RPL=0;RPP=155.013;RPPR=65.983;RPR=70;RUN=1;SAF=70;SAP=155.013;SAR=0;SRF=29;SRP=65.983;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:65:16,49:16:634:49:1933:-154.59,0,-37.8263 0/1:21:7,14:7:280:14:561:-44.5109,0,-19.2497 0/1:13:6,7:6:244:7:281:-21.7477,0,-18.4254 dDocent_Contig_5387 107 . N T 59.3948 . AB=0;ABP=0;AC=2;AF=1;AN=2;AO=2;CIGAR=1X;DP=3;DPB=3;DPRA=0;EPP=7.35324;EPPR=0;GTI=0;LEN=1;MEANALT=2;MQM=60;MQMR=0;NS=1;NUMALT=1;ODDS=5.99146;PAIRED=1;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=64;QR=0;RO=0;RPL=0;RPP=7.35324;RPPR=0;RPR=2;RUN=1;SAF=0;SAP=7.35324;SAR=2;SRF=0;SRP=0;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 1/1:3:0,2:0:0:2:64:-5.9384,-0.60206,0 ./.:.:.:.:.:.:.:. ./.:.:.:.:.:.:.:. dDocent_Contig_5388 13 . C G 2728.59 . AB=0.0909091;ABP=114.94;AC=2;AF=0.333333;AN=6;AO=7;CIGAR=1X1M2X1M2X2M1X1M1X;DP=179;DPB=233.75;DPRA=0;EPP=18.2106;EPPR=74.6689;GTI=0;LEN=1;MEANALT=4;MQM=60;MQMR=60;NS=3;NUMALT=4;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=274;QR=1291;RO=33;RPL=0;RPP=18.2106;RPPR=74.6689;RPR=7;RUN=1;SAF=7;SAP=18.2106;SAR=0;SRF=33;SRP=74.6689;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 1|0:102:13,28,15,0,43:13:506:28,15,0,43:1090,590,0,1692:-183.244,-97.5787,-130.732,-138.623,-90.6267,-175.69,-187.157,-139.16,-180.205,-228.739,-47.996,0,-41.0437,-89.5781,-76.6339 1|0:30:4,6,5,1,14:4:154:6,5,1,14:238,191,39,539:-49.9944,-31.6037,-42.4417,-35.529,-28.5777,-46.6674,-47.9926,-41.0417,-44.9666,-60.3353,-6.95395,0,-3.92906,-16.3908,-15.3824 0|0:47:16,6,4,6,15:16:631:6,4,6,15:239,160,235,606:-45.1443,-30.2799,-80.3876,-36.7805,-69.0133,-87.4905,-30.6385,-62.8706,-69.3713,-80.7456,0,-32.2333,-38.7343,-32.5918,-47.3998 dDocent_Contig_5389 25 . G A 43.4792 . AB=0.142857;ABP=34.0313;AC=1;AF=0.166667;AN=6;AO=9;CIGAR=1X3M1X;DP=201;DPB=201;DPRA=0;EPP=22.5536;EPPR=417.762;GTI=0;LEN=1;MEANALT=1.33333;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=0.748691;PAO=0;PQA=0;PQR=0;PRO=0;QA=347;QR=7250;RO=191;RPL=0;RPP=22.5536;RPPR=417.762;RPR=9;RUN=1;SAF=9;SAP=22.5536;SAR=0;SRF=191;SRP=417.762;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|0:151:146,4:146:5548:4:149:0,-31.5387,-485.58 0|1:28:24,4:24:896:4:158:-6.17181,0,-72.5251 0|0:22:21,1:21:806:1:40:0,-2.62698,-68.868 dDocent_Contig_5391 50 . T C 370.301 . AB=0.306122;ABP=19.0083;AC=3;AF=0.5;AN=6;AO=15;CIGAR=1X;DP=49;DPB=49;DPRA=0;EPP=35.5824;EPPR=76.8404;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=3.46945e-18;PAIRED=0.933333;PAIREDR=0.970588;PAO=0;PQA=0;PQR=0;PRO=0;QA=607;QR=1364;RO=34;RPL=15;RPP=35.5824;RPPR=76.8404;RPR=0;RUN=1;SAF=15;SAP=35.5824;SAR=0;SRF=34;SRP=76.8404;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:25:15,10:15:597:10:403:-29.1025,0,-46.543 0/1:12:8,4:8:325:4:163:-11.4461,0,-26.0073 0/1:12:11,1:11:442:1:41:-0.482207,0,-36.5225 dDocent_Contig_5392 30 . T A 439.394 . AB=0.625;ABP=6.26751;AC=1;AF=0.166667;AN=6;AO=17;CIGAR=2X;DP=60;DPB=60;DPRA=5.5;EPP=39.9253;EPPR=96.3836;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=664;QR=1548;RO=43;RPL=0;RPP=39.9253;RPPR=96.3836;RPR=17;RUN=1;SAF=17;SAP=39.9253;SAR=0;SRF=43;SRP=96.3836;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|0:31:29,2:29:1058:2:79:0,-1.8343,-88.0311 0|1:24:9,15:9:302:15:585:-45.7633,0,-20.2815 0|0:5:5,0:5:188:0:0:0,-1.50515,-17.283 dDocent_Contig_5393 172 . A C 51.7996 . AB=0.128205;ABP=49.8362;AC=1;AF=0.166667;AN=6;AO=5;CIGAR=1X;DP=113;DPB=113;DPRA=1.05405;EPP=13.8677;EPPR=237.529;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=1.73472e-18;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=204;QR=4331;RO=108;RPL=5;RPP=13.8677;RPPR=237.529;RPR=0;RUN=1;SAF=0;SAP=13.8677;SAR=5;SRF=0;SRP=237.529;SRR=108;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:62:62,0:62:2477:0:0:0,-18.6639,-223.075 0/0:12:12,0:12:482:0:0:0,-3.61236,-43.7319 0/1:39:34,5:34:1372:5:204:-7.00386,0,-111.997 dDocent_Contig_5394 62 . G A 687.568 . AB=0.320755;ABP=32.5915;AC=2;AF=0.333333;AN=6;AO=35;CIGAR=1X;DP=121;DPB=121;DPRA=0;EPP=79.0118;EPPR=189.757;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=1186;QR=3048;RO=86;RPL=35;RPP=79.0118;RPPR=189.757;RPR=0;RUN=1;SAF=35;SAP=79.0118;SAR=0;SRF=86;SRP=189.757;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:74:46,28:46:1629:28:978:-66.0587,0,-124.622 0/0:15:14,1:14:511:1:35:0,-1.01682,-42.8315 0/1:32:26,6:26:908:6:173:-6.22083,0,-72.4018 dDocent_Contig_5395 19 . A G 168.228 . AB=0.304348;ABP=10.6577;AC=1;AF=0.166667;AN=6;AO=8;CIGAR=1X;DP=222;DPB=222;DPRA=0.230263;EPP=20.3821;EPPR=467.705;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=59.9159;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=321;QR=8541;RO=214;RPL=0;RPP=20.3821;RPPR=467.705;RPR=8;RUN=1;SAF=8;SAP=20.3821;SAR=0;SRF=214;SRP=467.705;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:152:152,0:152:6053:0:0:0,-45.7566,-544.546 0/1:23:16,7:16:650:7:280:-18.6468,0,-51.9093 0/0:47:46,1:46:1838:1:41:0,-10.0538,-161.31 dDocent_Contig_5396 23 . T A 302.969 . AB=0.15;ABP=24.2907;AC=0;AF=0;AN=6;AO=3;CIGAR=1M2D1M1X3M1X;DP=43;DPB=38.7778;DPRA=0;EPP=9.52472;EPPR=55.1256;GTI=0;LEN=1;MEANALT=2;MQM=51;MQMR=60;NS=3;NUMALT=3;ODDS=0;PAIRED=0;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=122;QR=946;RO=24;RPL=0;RPP=9.52472;RPPR=55.1256;RPR=3;RUN=1;SAF=3;SAP=9.52472;SAR=0;SRF=24;SRP=55.1256;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|0:20:9,3,0,8:9:353:3,0,8:122,0,312:-22.8647,-15.5976,-43.7263,-25.574,-44.6293,-54.6037,0,-19.0466,-29.0219,-26.6136 0|0:8:7,0,0,1:7:277:0,0,1:0,0,40:-1.58318,-3.69039,-26.485,-3.69039,-26.485,-26.485,0,-23.1933,-23.1933,-22.8922 0|0:15:8,0,3,4:8:316:0,3,4:0,117,161:-10.9029,-13.3111,-39.3341,-6.16027,-32.1591,-31.256,0,-26.0723,-18.9037,-24.8682 dDocent_Contig_5397 19 . C A 467.101 . AB=0.135922;ABP=358.773;AC=2;AF=0.333333;AN=6;AO=50;CIGAR=1X;DP=425;DPB=425;DPRA=0;EPP=111.584;EPPR=817.312;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=1864;QR=14895;RO=375;RPL=0;RPP=111.584;RPPR=817.312;RPR=50;RUN=1;SAF=50;SAP=111.584;SAR=0;SRF=375;SRP=817.312;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:253:216,37:216:8607:37:1379:-48.2258,0,-697.965 0/1:56:51,5:51:2035:5:191:-0.700678,0,-166.476 0/0:116:108,8:108:4253:8:294:0,-8.1107,-355.909 dDocent_Contig_5398 9 . A G 1277.76 . AB=0.11837;ABP=1648.8;AC=3;AF=0.5;AN=6;AO=154;CIGAR=1X;DP=1301;DPB=1301;DPRA=0;EPP=337.417;EPPR=2478.49;GTI=0;LEN=1;MEANALT=2;MQM=58.4286;MQMR=58.5211;NS=3;NUMALT=1;ODDS=0;PAIRED=0.675325;PAIREDR=0.67193;PAO=0;PQA=0;PQR=0;PRO=0;QA=5828;QR=43739;RO=1140;RPL=0;RPP=337.417;RPPR=2478.49;RPR=154;RUN=1;SAF=154;SAP=337.417;SAR=0;SRF=1140;SRP=2478.49;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:543:490,52:490:18806:52:1968:-12.9711,0,-1521.24 0/1:317:269,46:269:10283:46:1722:-59.8612,0,-823.873 0/1:441:381,56:381:14650:56:2138:-60.467,0,-1179.58 dDocent_Contig_5399 11 . G A 64.5382 . AB=0.190476;ABP=20.4855;AC=1;AF=0.166667;AN=6;AO=4;CIGAR=1X;DP=60;DPB=60;DPRA=1.07692;EPP=11.6962;EPPR=124.613;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=158;QR=2248;RO=56;RPL=0;RPP=11.6962;RPPR=124.613;RPR=4;RUN=1;SAF=4;SAP=11.6962;SAR=0;SRF=56;SRP=124.613;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:26:26,0:26:1045:0:0:0,-7.82678,-94.3398 0/1:21:17,4:17:686:4:158:-8.27773,0,-55.7485 0/0:13:13,0:13:517:0:0:0,-3.91339,-46.8734 dDocent_Contig_5400 49 . A G 756.822 . AB=0.405797;ABP=8.32883;AC=3;AF=0.5;AN=6;AO=28;CIGAR=1X;DP=69;DPB=69;DPRA=0;EPP=63.8115;EPPR=92.0407;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=0.607143;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=1121;QR=1631;RO=41;RPL=0;RPP=63.8115;RPPR=92.0407;RPR=28;RUN=1;SAF=28;SAP=63.8115;SAR=0;SRF=41;SRP=92.0407;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:43:27,16:27:1087:16:638:-44.8094,0,-85.1728 0/1:12:7,5:7:268:5:200:-14.7672,0,-20.8646 0/1:14:7,7:7:276:7:283:-21.6286,0,-20.9906 dDocent_Contig_5401 17 . A C 40.2737 . AB=0.109375;ABP=87.8334;AC=1;AF=0.166667;AN=6;AO=24;CIGAR=1X;DP=320;DPB=320;DPRA=0;EPP=55.1256;EPPR=645.766;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=1.38778e-17;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=960;QR=11780;RO=296;RPL=0;RPP=55.1256;RPPR=645.766;RPR=24;RUN=1;SAF=24;SAP=55.1256;SAR=0;SRF=296;SRP=645.766;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:202:189,13:189:7518:13:526:0,-13.1209,-628.561 0/0:54:50,4:50:1977:4:159:0,-1.56366,-163.433 0/1:64:57,7:57:2285:7:275:-5.85119,0,-186.547 dDocent_Contig_5402 13 . C T 53.7335 . AB=0.15;ABP=45.5712;AC=1;AF=0.166667;AN=6;AO=6;CIGAR=1X;DP=175;DPB=175;DPRA=0.592593;EPP=16.0391;EPPR=369.989;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=3.46945e-18;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=210;QR=6601;RO=169;RPL=0;RPP=16.0391;RPPR=369.989;RPR=6;RUN=1;SAF=6;SAP=16.0391;SAR=0;SRF=169;SRP=369.989;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:105:105,0:105:4077:0:0:0,-31.6081,-366.927 0/0:30:30,0:30:1188:0:0:0,-9.0309,-107.195 0/1:40:34,6:34:1336:6:210:-7.19725,0,-108.457 dDocent_Contig_5403 133 . A G 3369.39 . AB=0.770186;ABP=105.096;AC=3;AF=0.5;AN=6;AO=124;CIGAR=1X;DP=161;DPB=161;DPRA=0;EPP=272.273;EPPR=83.3548;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=4334;QR=1350;RO=37;RPL=0;RPP=272.273;RPPR=83.3548;RPR=124;RUN=1;SAF=0;SAP=272.273;SAR=124;SRF=0;SRP=83.3548;SRR=37;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:75:18,57:18:658:57:1965:-154.532,0,-36.9757 0/1:57:12,45:12:438:45:1592:-126.408,0,-22.6046 0/1:29:7,22:7:254:22:777:-61.5214,0,-14.4808 dDocent_Contig_5404 12 . C A 2180.14 . AB=0.424731;ABP=12.1632;AC=3;AF=0.5;AN=6;AO=79;CIGAR=1X2M1X3M1X;DP=186;DPB=186;DPRA=0;EPP=174.557;EPPR=233.186;GTI=0;LEN=1;MEANALT=1.33333;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=1.38778e-17;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=3097;QR=4162;RO=106;RPL=0;RPP=174.557;RPPR=233.186;RPR=79;RUN=1;SAF=79;SAP=174.557;SAR=0;SRF=106;SRP=233.186;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|1:82:37,45:37:1448:45:1756:-133.593,0,-105.899 0|1:49:29,19:29:1147:19:749:-52.8793,0,-88.6612 0|1:55:40,15:40:1567:15:592:-37.0642,0,-124.726 dDocent_Contig_5405 162 . A T 511.648 . AB=0.219298;ABP=81.0309;AC=3;AF=0.5;AN=6;AO=25;CIGAR=1X;DP=114;DPB=114;DPRA=0;EPP=57.2971;EPPR=196.271;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=999;QR=3599;RO=89;RPL=25;RPP=57.2971;RPPR=196.271;RPR=0;RUN=1;SAF=0;SAP=57.2971;SAR=25;SRF=0;SRP=196.271;SRR=89;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:64:53,11:53:2151:11:444:-21.0488,0,-174.487 0/1:22:17,5:17:681:5:204:-12.1214,0,-54.9972 0/1:28:19,9:19:767:9:351:-23.5175,0,-60.9198 dDocent_Contig_5406 50 . A T 2733.96 . AB=0.3625;ABP=55.5599;AC=3;AF=0.5;AN=6;AO=116;CIGAR=1X;DP=320;DPB=320;DPRA=0;EPP=254.901;EPPR=379.229;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=1.38778e-17;PAIRED=1;PAIREDR=0.985294;PAO=0;PQA=0;PQR=0;PRO=0;QA=4160;QR=7207;RO=204;RPL=116;RPP=254.901;RPPR=379.229;RPR=0;RUN=1;SAF=116;SAP=254.901;SAR=0;SRF=204;SRP=445.991;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:182:126,56:126:4380:56:2044:-129.414,0,-339.551 0/1:63:39,24:39:1395:24:867:-59.3733,0,-106.865 0/1:75:39,36:39:1432:36:1249:-90.1316,0,-106.586 dDocent_Contig_5407 19 . T C 69.1779 . AB=0.103448;ABP=161.453;AC=2;AF=0.333333;AN=6;AO=13;CIGAR=1X;DP=175;DPB=175;DPRA=0;EPP=31.2394;EPPR=354.789;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=516;QR=6113;RO=162;RPL=0;RPP=31.2394;RPPR=354.789;RPR=13;RUN=1;SAF=13;SAP=31.2394;SAR=0;SRF=162;SRP=354.789;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:79:70,9:70:2631:9:354:-8.43819,0,-213.196 0/0:59:58,1:58:2167:1:40:0,-13.7651,-191.267 0/1:37:34,3:34:1315:3:122:-0.234383,0,-107.495 dDocent_Contig_5408 8 . C G 134.419 . AB=0.0144928;ABP=144.282;AC=0;AF=0;AN=6;AO=3;CIGAR=1X1M1X1M1X3M1X;DP=125;DPB=125;DPRA=0;EPP=9.52472;EPPR=217.986;GTI=0;LEN=1;MEANALT=3;MQM=16;MQMR=60;NS=3;NUMALT=4;ODDS=1.38778e-17;PAIRED=0;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=110;QR=3823;RO=99;RPL=0;RPP=9.52472;RPPR=217.986;RPR=3;RUN=1;SAF=3;SAP=9.52472;SAR=0;SRF=99;SRP=217.986;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|0:69:58,1,7,1,2:58:2242:1,7,1,2:32,281,40,81:-5.73223,-22.0845,-205.906,0,-183.051,-182.07,-19.8949,-202.912,-180.882,-203.737,-16.5072,-199.527,-177.497,-197.358,-200.051 0|0:26:23,2,0,1,0:23:893:2,0,1,0:78,0,41,0:0,-4.81611,-77.5636,-6.92369,-78.1657,-80.4221,-3.45638,-74.7807,-77.0365,-76.7355,-6.92369,-78.1657,-80.4221,-77.0365,-80.4221 0|0:30:18,0,2,4,5:18:688:0,2,4,5:0,82,164,202:-11.2324,-16.6509,-73.0787,-9.88212,-66.3093,-65.7073,-3.11297,-59.5397,-52.7698,-58.3356,0,-56.4235,-49.6536,-42.8833,-54.9184 dDocent_Contig_5410 34 . T C 97.0947 . AB=0.148148;ABP=61.0771;AC=2;AF=0.333333;AN=6;AO=9;CIGAR=1X;DP=68;DPB=68;DPRA=0;EPP=22.5536;EPPR=128.956;GTI=0;LEN=1;MEANALT=1.33333;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=359;QR=2274;RO=58;RPL=0;RPP=22.5536;RPPR=128.956;RPR=9;RUN=1;SAF=9;SAP=22.5536;SAR=0;SRF=58;SRP=128.956;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:36:30,6:30:1158:6:239:-11.0461,0,-93.6576 0/0:14:12,1:12:487:1:41:0,-0.228279,-40.0868 0/1:18:16,2:16:629:2:79:-2.07909,0,-51.5189 dDocent_Contig_5412 8 . A C 951.09 . AB=0.45;ABP=4.31318;AC=4;AF=0.666667;AN=6;AO=33;CIGAR=2M1X4M;DP=66;DPB=66.5714;DPRA=0;EPP=74.6689;EPPR=65.983;GTI=0;LEN=1;MEANALT=1.66667;MQM=60;MQMR=60;NS=3;NUMALT=2;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=1280;QR=1116;RO=29;RPL=0;RPP=74.6689;RPPR=65.983;RPR=33;RUN=1;SAF=33;SAP=74.6689;SAR=0;SRF=29;SRP=65.983;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|1:24:8,2,14:8:312:2,14:78,543:-42.204,-38.2002,-63.2459,0,-19.2353,-21.4326 1|1:6:0,0,6:0:0:0,6:0,232:-21.2489,-21.2489,-21.2489,-1.80618,-1.80618,0 0|1:36:21,2,13:21:804:2,13:77,505:-35.1789,-35.1786,-100.553,0,-59.6551,-62.0643 dDocent_Contig_5413 14 . G T 2983.15 . AB=0.465753;ABP=5.24126;AC=3;AF=0.5;AN=6;AO=102;CIGAR=1X;DP=219;DPB=219;DPRA=0;EPP=224.5;EPPR=257.073;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=1.38778e-17;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=4100;QR=4659;RO=117;RPL=0;RPP=224.5;RPPR=257.073;RPR=102;RUN=1;SAF=102;SAP=224.5;SAR=0;SRF=117;SRP=257.073;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:110:64,46:64:2561:46:1858:-134.307,0,-197.508 0/1:61:35,26:35:1377:26:1043:-75.7959,0,-105.829 0/1:48:18,30:18:721:30:1199:-93.7354,0,-50.7635 dDocent_Contig_5415 11 . C T 59.5526 . AB=0.147059;ABP=39.7976;AC=1;AF=0.166667;AN=6;AO=14;CIGAR=1X;DP=165;DPB=165;DPRA=4.35294;EPP=33.4109;EPPR=330.903;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=57.7285;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=565;QR=6063;RO=151;RPL=0;RPP=33.4109;RPPR=330.903;RPR=14;RUN=1;SAF=14;SAP=33.4109;SAR=0;SRF=151;SRP=330.903;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:114:105,9:105:4229:9:369:0,-0.741968,-328.452 0/0:17:17,0:17:665:0:0:0,-5.11751,-60.1738 0/1:34:29,5:29:1169:5:196:-7.77891,0,-95.2524 dDocent_Contig_5416 7 . C A 19930.3 . AB=0.805211;ABP=655.163;AC=3;AF=0.5;AN=6;AO=649;CIGAR=2X;DP=806;DPB=806;DPRA=0;EPP=1412.3;EPPR=320.045;GTI=0;LEN=1;MEANALT=2.66667;MQM=60;MQMR=59.9726;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=24884;QR=5615;RO=146;RPL=0;RPP=1412.3;RPPR=320.045;RPR=649;RUN=1;SAF=649;SAP=1412.3;SAR=0;SRF=146;SRP=320.045;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|1:472:79,385:79:3039:385:14733:-1185.24,0,-133.612 0|1:100:19,80:19:724:80:3084:-247.537,0,-35.3097 0|1:234:48,184:48:1852:184:7067:-565.778,0,-96.795 dDocent_Contig_5418 9 . A C 828.995 . AB=0.144578;ABP=94.0813;AC=3;AF=0.5;AN=6;AO=12;CIGAR=1X6M;DP=112;DPB=112;DPRA=0;EPP=29.068;EPPR=128.956;GTI=0;LEN=1;MEANALT=4;MQM=60;MQMR=60;NS=3;NUMALT=4;ODDS=1.38778e-17;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=465;QR=2233;RO=58;RPL=0;RPP=29.068;RPPR=128.956;RPR=12;RUN=1;SAF=12;SAP=29.068;SAR=0;SRF=58;SRP=128.956;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|1:49:31,4,0,10,4:31:1207:4,0,10,4:160,0,387,164:-22.4501,-18.7687,-116.761,-31.7821,-117.965,-130.978,0,-86.1754,-99.1887,-96.1784,-18.2412,-104.427,-117.44,-85.6504,-116.236 0|1:29:10,4,13,0,2:10:368:4,13,0,2:155,481,0,68:-35.8332,-26.1041,-54.9849,0,-17.3403,-26.1671,-38.8435,-56.1891,-30.0804,-68.9264,-33.3339,-50.6783,-24.5718,-63.4156,-62.8135 0|1:34:17,1,11,2,2:17:658:1,11,2,2:40,429,78,82:-30.1391,-31.961,-85.7054,0,-50.7453,-50.7295,-28.8451,-79.5947,-47.629,-82.288,-28.4861,-79.237,-47.2707,-76.1206,-81.9304 dDocent_Contig_5419 122 . A G 6552.28 . AB=0.811448;ABP=253.241;AC=3;AF=0.5;AN=6;AO=241;CIGAR=1X;DP=297;DPB=297;DPRA=0;EPP=526.335;EPPR=124.613;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=8327;QR=1891;RO=56;RPL=0;RPP=526.335;RPPR=124.613;RPR=241;RUN=1;SAF=0;SAP=526.335;SAR=241;SRF=0;SRP=124.613;SRR=56;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:191:29,162:29:1000:162:5644:-450.596,0,-32.8155 0/1:8:2,6:2:70:6:214:-17.1996,0,-4.23916 0/1:98:25,73:25:821:73:2469:-192.954,0,-44.6916 dDocent_Contig_5420 11 . A T 64.4625 . AB=0.113636;ABP=117.111;AC=2;AF=0.333333;AN=6;AO=10;CIGAR=1X;DP=246;DPB=246;DPRA=0.278481;EPP=24.725;EPPR=515.478;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=396;QR=9316;RO=236;RPL=0;RPP=24.725;RPPR=515.478;RPR=10;RUN=1;SAF=10;SAP=24.725;SAR=0;SRF=236;SRP=515.478;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:158:158,0:158:6279:0:0:0,-47.5627,-564.873 0/1:40:36,4:36:1406:4:155:-2.28265,0,-114.752 0/1:48:42,6:42:1631:6:241:-7.61686,0,-132.561 dDocent_Contig_5421 16 . C A 3465.72 . AB=0.885246;ABP=160.282;AC=3;AF=0.5;AN=6;AO=108;CIGAR=1X;DP=122;DPB=122;DPRA=0;EPP=237.529;EPPR=33.4109;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=4296;QR=571;RO=14;RPL=0;RPP=237.529;RPPR=33.4109;RPR=108;RUN=1;SAF=108;SAP=237.529;SAR=0;SRF=14;SRP=33.4109;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:80:7,73:7:286:73:2920:-238.81,0,-2.03242 0/1:11:1,10:1:40:10:404:-33.4085,0,-0.684349 0/1:31:6,25:6:245:25:972:-78.4384,0,-13.0975 dDocent_Contig_5422 188 . T G 84.1804 . AB=0.235294;ABP=13.3567;AC=1;AF=0.166667;AN=6;AO=4;CIGAR=1X;DP=38;DPB=38;DPRA=1.61905;EPP=11.6962;EPPR=76.8404;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=163;QR=1308;RO=34;RPL=4;RPP=11.6962;RPPR=76.8404;RPR=0;RUN=1;SAF=0;SAP=11.6962;SAR=4;SRF=0;SRP=76.8404;SRR=34;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:17:13,4:13:511:4:163:-9.94092,0,-41.2135 0/0:10:10,0:10:368:0:0:0,-3.0103,-33.4636 0/0:11:11,0:11:429:0:0:0,-3.31133,-38.955 dDocent_Contig_5424 181 . A T 711.164 . AB=0.35;ABP=18.6449;AC=3;AF=0.5;AN=6;AO=28;CIGAR=1X;DP=80;DPB=80;DPRA=0;EPP=63.8115;EPPR=115.927;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=1107;QR=2092;RO=52;RPL=28;RPP=63.8115;RPPR=115.927;RPR=0;RUN=1;SAF=0;SAP=63.8115;SAR=28;SRF=0;SRP=115.927;SRR=52;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:50:29,21:29:1165:21:829:-59.8699,0,-90.0748 0/1:15:13,2:13:528:2:81:-3.17028,0,-43.3514 0/1:15:10,5:10:399:5:197:-13.5893,0,-31.7513 dDocent_Contig_5425 37 . G A 635.551 . AB=0.4;ABP=8.22183;AC=3;AF=0.5;AN=6;AO=24;CIGAR=1X;DP=60;DPB=60;DPRA=0;EPP=55.1256;EPPR=81.1833;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=956;QR=1430;RO=36;RPL=0;RPP=55.1256;RPPR=81.1833;RPR=24;RUN=1;SAF=24;SAP=55.1256;SAR=0;SRF=36;SRP=81.1833;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:24:17,7:17:676:7:281:-18.4373,0,-53.9429 0/1:17:10,7:10:396:7:278:-20.2729,0,-30.8806 0/1:19:9,10:9:358:10:397:-30.3678,0,-26.8625 dDocent_Contig_5426 18 . T A 139.208 . AB=0.285714;ABP=11.386;AC=1;AF=0.166667;AN=6;AO=7;CIGAR=1X;DP=129;DPB=129;DPRA=0.296296;EPP=18.2106;EPPR=267.93;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=281;QR=4890;RO=122;RPL=0;RPP=18.2106;RPPR=267.93;RPR=7;RUN=1;SAF=7;SAP=18.2106;SAR=0;SRF=122;SRP=267.93;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:81:81,0:81:3230:0:0:0,-24.3834,-290.758 0/1:21:15,6:15:601:6:241:-15.7447,0,-48.1077 0/0:27:26,1:26:1059:1:40:0,-4.13213,-91.5999 dDocent_Contig_5427 12 . C T 14150.6 . AB=0.0734824;ABP=992.161;AC=1;AF=0.166667;AN=6;AO=46;CIGAR=1X2M1X;DP=626;DPB=626;DPRA=0;EPP=102.898;EPPR=68.1545;GTI=0;LEN=1;MEANALT=5.33333;MQM=60;MQMR=60;NS=3;NUMALT=3;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=1800;QR=1149;RO=30;RPL=0;RPP=102.898;RPPR=68.1545;RPR=46;RUN=1;SAF=46;SAP=102.898;SAR=0;SRF=30;SRP=68.1545;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 1|0:319:13,41,53,196:13:496:41,53,196:1604,2104,7623:-713.759,-585.787,-614.134,-622.355,-531.162,-647.089,-91.2201,0,-36.6384,-72.9135 0|0:142:4,3,38,89:4:148:3,38,89:116,1497,3415:-335.219,-326.894,-338.097,-268.185,-270.762,-268.851,-56.0656,-58.6443,0,-41.3876 0|0:165:13,2,35,110:13:505:2,35,110:80,1381,4312:-371.61,-368.933,-409.829,-313.095,-348,-344.054,-20.8404,-55.7733,0,-29.2544 dDocent_Contig_5428 8 . A C 4868.12 . AB=0.372233;ABP=73.4805;AC=3;AF=0.5;AN=6;AO=185;CIGAR=1X;DP=497;DPB=497;DPRA=0;EPP=404.733;EPPR=676.167;GTI=0;LEN=1;MEANALT=1.66667;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=7126;QR=11829;RO=310;RPL=0;RPP=404.733;RPPR=676.167;RPR=185;RUN=1;SAF=185;SAP=404.733;SAR=0;SRF=310;SRP=676.167;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:201:135,65:135:5169:65:2513:-165.77,0,-404.627 0/1:167:81,85:81:3044:85:3261:-243.434,0,-223.932 0/1:129:94,35:94:3616:35:1352:-83.1308,0,-286.724 dDocent_Contig_5429 22 . T G 9510.15 . AB=0.721448;ABP=155.927;AC=6;AF=1;AN=6;AO=259;CIGAR=1X1M1X3M;DP=359;DPB=359;DPRA=0;EPP=565.422;EPPR=50.7827;GTI=0;LEN=1;MEANALT=4;MQM=60;MQMR=60;NS=3;NUMALT=2;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=9837;QR=851;RO=22;RPL=0;RPP=565.422;RPPR=50.7827;RPR=259;RUN=1;SAF=259;SAP=565.422;SAR=0;SRF=22;SRP=50.7827;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 1|1:246:10,51,182:10:389:51,182:1956,6907:-691.889,-534.367,-550.979,-128.58,0,-105.758 1|1:42:6,9,27:6:227:9,27:346,1041:-93.4828,-66.885,-82.7788,-9.80602,0,-20.2801 1|1:71:6,12,50:6:235:12,50:457,1889:-171.165,-135.489,-151.2,-18.151,0,-22.4238 dDocent_Contig_5430 23 . A G 84.0034 . AB=0.178571;ABP=28.1373;AC=1;AF=0.166667;AN=6;AO=7;CIGAR=1X;DP=84;DPB=84;DPRA=0;EPP=18.2106;EPPR=170.214;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=0;PAIREDR=0.753247;PAO=0;PQA=0;PQR=0;PRO=0;QA=282;QR=3054;RO=77;RPL=0;RPP=18.2106;RPPR=170.214;RPR=7;RUN=1;SAF=7;SAP=18.2106;SAR=0;SRF=77;SRP=170.214;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:19:18,1:18:718:1:41:0,-1.625,-60.8526 0/0:37:36,1:36:1431:1:38:0,-7.34084,-125.249 0/1:28:23,5:23:905:5:203:-10.2242,0,-73.3274 dDocent_Contig_5431 12 . C T 238.331 . AB=0.0526316;ABP=69.0688;AC=0;AF=0;AN=6;AO=2;CIGAR=4M1X2M;DP=135;DPB=132.714;DPRA=0;EPP=7.35324;EPPR=237.529;GTI=0;LEN=1;MEANALT=3;MQM=60;MQMR=60;NS=3;NUMALT=3;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=81;QR=4239;RO=108;RPL=0;RPP=7.35324;RPPR=237.529;RPR=2;RUN=1;SAF=2;SAP=7.35324;SAR=0;SRF=108;SRP=237.529;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|0:38:27,3,2,6:27:1056:3,2,6:117,81,245:-12.0943,-10.6092,-96.5166,-13.5425,-90.7399,-99.7552,0,-77.2015,-80.1389,-85.0127 0|0:54:48,5,0,1:48:1873:5,0,1:188,0,37:-0.957847,0,-152.478,-15.4073,-153.983,-169.384,-12.3813,-150.957,-166.358,-166.057 0|0:43:33,8,0,2:33:1310:8,0,2:307,0,81:-15.2487,0,-105.43,-25.1827,-107.838,-133.035,-18.4993,-101.158,-126.355,-125.753 dDocent_Contig_5432 30 . G A 87.28 . AB=0.0950704;ABP=407.485;AC=2;AF=0.333333;AN=6;AO=29;CIGAR=1X;DP=327;DPB=327;DPRA=0;EPP=65.983;EPPR=647.938;GTI=0;LEN=1;MEANALT=1.33333;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=1140;QR=11868;RO=297;RPL=0;RPP=65.983;RPPR=647.938;RPR=29;RUN=1;SAF=29;SAP=65.983;SAR=0;SRF=297;SRP=647.938;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:213:191,21:191:7662:21:824:-10.2471,0,-624.947 0/0:43:41,2:41:1627:2:78:0,-5.54099,-139.263 0/1:71:65,6:65:2579:6:238:-0.420114,0,-210.869 dDocent_Contig_5433 25 . C A 133.11 . AB=0.117647;ABP=154.119;AC=2;AF=0.333333;AN=6;AO=14;CIGAR=1X;DP=137;DPB=137;DPRA=3.30556;EPP=33.4109;EPPR=270.101;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=6.93889e-18;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=566;QR=4870;RO=123;RPL=0;RPP=33.4109;RPPR=270.101;RPR=14;RUN=1;SAF=14;SAP=33.4109;SAR=0;SRF=123;SRP=270.101;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:85:74,11:74:2939:11:445:-14.8182,0,-239.017 0/0:18:18,0:18:691:0:0:0,-5.41854,-62.507 0/1:34:31,3:31:1240:3:121:-1.04497,0,-101.638 dDocent_Contig_5434 45 . T C 195.21 . AB=0.15;ABP=24.2907;AC=1;AF=0.166667;AN=6;AO=3;CIGAR=1X3M1X;DP=62;DPB=62;DPRA=0;EPP=9.52472;EPPR=111.584;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=2;ODDS=3.46945e-18;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=118;QR=1937;RO=50;RPL=0;RPP=9.52472;RPPR=111.584;RPR=3;RUN=1;SAF=3;SAP=9.52472;SAR=0;SRF=50;SRP=111.584;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|1:20:17,3,0:17:645:3,0:118,0:-4.98212,0,-52.3559,-10.0996,-53.259,-62.9678 0|0:27:23,0,4:23:905:0,4:0,158:-6.47216,-13.3959,-87.8398,0,-74.8383,-73.6342 0|0:15:10,0,5:10:387:0,5:0,197:-13.5895,-16.5998,-48.3824,0,-32.1739,-30.6688 dDocent_Contig_5435 27 . C A 200.729 . AB=0.236842;ABP=25.8679;AC=1;AF=0.166667;AN=6;AO=11;CIGAR=1X;DP=71;DPB=71;DPRA=0;EPP=26.8965;EPPR=133.299;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=429;QR=2384;RO=60;RPL=0;RPP=26.8965;RPPR=133.299;RPR=11;RUN=1;SAF=11;SAP=26.8965;SAR=0;SRF=60;SRP=133.299;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:38:29,9:29:1148:9:363:-21.5957,0,-92.1636 0/0:18:17,1:17:679:1:39:0,-1.52198,-57.5452 0/0:15:14,1:14:557:1:27:0,-1.81567,-47.773 dDocent_Contig_5436 9 . A C 57.1145 . AB=0.125;ABP=71.4117;AC=1;AF=0.166667;AN=6;AO=9;CIGAR=1X;DP=215;DPB=215;DPRA=8.45833;EPP=22.5536;EPPR=450.334;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=345;QR=7856;RO=206;RPL=0;RPP=22.5536;RPPR=450.334;RPR=9;RUN=1;SAF=9;SAP=22.5536;SAR=0;SRF=206;SRP=450.334;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:147:145,2:145:5560:2:78:0,-36.8479,-492.978 0/0:12:12,0:12:441:0:0:0,-3.61236,-40.0298 0/1:56:49,7:49:1855:7:267:-7.53536,0,-150.344 dDocent_Contig_5437 20 . T G 307.147 . AB=0.17094;ABP=113.05;AC=2;AF=0.333333;AN=6;AO=29;CIGAR=1X;DP=256;DPB=256;DPRA=0;EPP=65.983;EPPR=493.763;GTI=0;LEN=1;MEANALT=1.33333;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=1132;QR=9106;RO=226;RPL=0;RPP=65.983;RPPR=493.763;RPR=29;RUN=1;SAF=29;SAP=65.983;SAR=0;SRF=226;SRP=493.763;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:139:130,9:130:5237:9:368:0,-8.35782,-437.681 0/1:69:56,13:56:2257:13:492:-23.8458,0,-182.52 0/1:48:40,7:40:1612:7:272:-10.3918,0,-130.869 dDocent_Contig_5438 9 . G A 3776.7 . AB=0.62201;ABP=30.0342;AC=3;AF=0.5;AN=6;AO=130;CIGAR=1X;DP=209;DPB=209;DPRA=0;EPP=285.302;EPPR=174.557;GTI=0;LEN=1;MEANALT=1;MQM=59.9846;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=0.936709;PAO=0;PQA=0;PQR=0;PRO=0;QA=4948;QR=3033;RO=79;RPL=0;RPP=285.302;RPPR=174.557;RPR=130;RUN=1;SAF=130;SAP=285.302;SAR=0;SRF=79;SRP=174.557;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:109:32,77:32:1228:77:2937:-231.69,0,-78.0025 0/1:62:33,29:33:1267:29:1085:-79.2871,0,-95.6581 0/1:38:14,24:14:538:24:926:-72.2158,0,-37.3258 dDocent_Contig_5439 20 . T A 301.492 . AB=0.285714;ABP=22.5536;AC=2;AF=0.333333;AN=6;AO=14;CIGAR=1X2M5I1X;DP=58;DPB=75.5;DPRA=2.72222;EPP=33.4109;EPPR=98.5551;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=530;QR=1720;RO=44;RPL=0;RPP=33.4109;RPPR=98.5551;RPR=14;RUN=1;SAF=14;SAP=33.4109;SAR=0;SRF=44;SRP=98.5551;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|1:38:28,10:28:1095:10:379:-23.0255,0,-87.4065 0|0:9:9,0:9:345:0:0:0,-2.70927,-31.4044 0|1:11:7,4:7:280:4:151:-10.6466,0,-22.2608 dDocent_Contig_5440 11 . A T 85.4557 . AB=0.0915033;ABP=224.77;AC=3;AF=0.5;AN=6;AO=14;CIGAR=1X1M;DP=171;DPB=171;DPRA=0;EPP=33.4109;EPPR=317.874;GTI=0;LEN=1;MEANALT=2;MQM=60;MQMR=60;NS=3;NUMALT=2;ODDS=0;PAIRED=1;PAIREDR=0.993103;PAO=0;PQA=0;PQR=0;PRO=0;QA=546;QR=5799;RO=145;RPL=0;RPP=33.4109;RPPR=317.874;RPR=14;RUN=1;SAF=14;SAP=33.4109;SAR=0;SRF=145;SRP=317.874;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|1:108:92,5,11:92:3662:5,11:202,428:-7.4604,-18.4971,-318.52,0,-284.861,-298.203 0|1:18:15,3,0:15:607:3,0:107,0:-4.55786,0,-49.5499,-9.07331,-50.453,-59.162 0|1:45:38,4,3:38:1530:4,3:158,118:-1.56178,0,-124.906,-3.29604,-116.406,-128.502 dDocent_Contig_5441 8 . C T 71.5994 . AB=0.193548;ABP=28.2974;AC=3;AF=0.5;AN=6;AO=6;CIGAR=1X;DP=31;DPB=31;DPRA=0;EPP=16.0391;EPPR=57.2971;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=226;QR=955;RO=25;RPL=0;RPP=16.0391;RPPR=57.2971;RPR=6;RUN=1;SAF=6;SAP=16.0391;SAR=0;SRF=25;SRP=57.2971;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:7:6,1:6:232:1:37:-1.59062,0,-19.1417 0/1:18:14,4:14:528:4:150:-8.44613,0,-42.4403 0/1:6:5,1:5:195:1:39:-2.09038,0,-16.118 dDocent_Contig_5442 128 . C G 85.3852 . AB=0;ABP=0;AC=0;AF=0;AN=6;AO=3;CIGAR=1X1M3X2M1X2M1X2M1X;DP=81;DPB=81.8571;DPRA=0.793103;EPP=9.52472;EPPR=141.985;GTI=0;LEN=1;MEANALT=3;MQM=5;MQMR=60;NS=3;NUMALT=3;ODDS=0;PAIRED=0;PAIREDR=0.984375;PAO=0;PQA=0;PQR=22.3333;PRO=0.666667;QA=100;QR=2093;RO=64;RPL=0;RPP=9.52472;RPPR=141.985;RPR=3;RUN=1;SAF=0;SAP=9.52472;SAR=3;SRF=0;SRP=141.985;SRR=64;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|0:29:26,2,0,0:26:843:2,0,0:61,0,0:0,-3.00494,-70.3494,-7.82678,-70.9515,-75.8369,-7.82678,-70.9515,-75.8369,-75.8369 0|0:29:20,2,0,6:20:643:2,0,6:64,0,208:-10.3624,-11.2305,-62.4501,-16.383,-63.0521,-68.2084,0,-46.6705,-51.827,-50.0208 0|0:23:18,1,3,0:18:607:1,3,0:33,100,0:0,-2.69799,-51.8118,-5.07865,-51.7047,-53.47,-5.41854,-52.1128,-54.3731,-54.7828 dDocent_Contig_5443 26 . T A 1735.36 . AB=0.716049;ABP=35.8505;AC=3;AF=0.5;AN=6;AO=58;CIGAR=1X;DP=81;DPB=81;DPRA=0;EPP=128.956;EPPR=52.9542;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=0.0344828;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=2250;QR=930;RO=23;RPL=0;RPP=128.956;RPPR=52.9542;RPR=58;RUN=1;SAF=58;SAP=128.956;SAR=0;SRF=23;SRP=52.9542;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:40:6,34:6:243:34:1319:-106.922,0,-10.207 0/1:22:6,16:6:240:16:614:-48.9638,0,-15.3524 0/1:19:11,8:11:447:8:317:-23.1734,0,-34.8659 dDocent_Contig_5444 112 . A G 552.086 . AB=0.396825;ABP=8.83536;AC=2;AF=0.333333;AN=6;AO=26;CIGAR=1X;DP=178;DPB=178;DPRA=0;EPP=59.4686;EPPR=333.074;GTI=0;LEN=1;MEANALT=1;MQM=59.5385;MQMR=59.8224;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=888;QR=5140;RO=152;RPL=0;RPP=59.4686;RPPR=333.074;RPR=26;RUN=1;SAF=0;SAP=59.4686;SAR=26;SRF=0;SRP=333.074;SRR=152;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:115:114,1:114:3866:1:32:0,-31.4292,-344.958 0/1:31:18,13:18:602:13:448:-31.318,0,-45.1652 0/1:32:20,12:20:672:12:408:-27.4135,0,-51.1629 dDocent_Contig_5447 43 . T C 10078.9 . AB=0.79397;ABP=301.757;AC=3;AF=0.5;AN=6;AO=316;CIGAR=1X;DP=398;DPB=398;DPRA=0;EPP=689.196;EPPR=170.214;GTI=0;LEN=1;MEANALT=1.33333;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=12580;QR=3037;RO=77;RPL=0;RPP=689.196;RPPR=170.214;RPR=316;RUN=1;SAF=316;SAP=689.196;SAR=0;SRF=77;SRP=170.214;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:288:65,218:65:2557:218:8665:-693.74,0,-144.677 0/1:29:3,26:3:120:26:1022:-83.5404,0,-2.45782 0/1:81:9,72:9:360:72:2893:-236.085,0,-8.37927 dDocent_Contig_5448 15 . C T 6985.32 . AB=0.529817;ABP=6.37708;AC=3;AF=0.5;AN=6;AO=231;CIGAR=1X;DP=436;DPB=436;DPRA=0;EPP=504.62;EPPR=448.162;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=9279;QR=8220;RO=205;RPL=0;RPP=504.62;RPPR=448.162;RPR=231;RUN=1;SAF=231;SAP=504.62;SAR=0;SRF=205;SRP=448.162;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:170:81,89:81:3269:89:3573:-270.397,0,-243.085 0/1:82:32,50:32:1259:50:2009:-156.312,0,-88.8919 0/1:184:92,92:92:3692:92:3697:-277.346,0,-276.9 dDocent_Contig_5449 55 . T C 39.7013 . AB=0.106061;ABP=91.9749;AC=1;AF=0.166667;AN=6;AO=7;CIGAR=1X;DP=236;DPB=236;DPRA=0.776471;EPP=18.2106;EPPR=500.277;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=281;QR=9068;RO=229;RPL=7;RPP=18.2106;RPPR=500.277;RPR=0;RUN=1;SAF=7;SAP=18.2106;SAR=0;SRF=229;SRP=500.277;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:145:145,0:145:5720:0:0:0,-43.6493,-514.616 0/0:25:25,0:25:1002:0:0:0,-7.52575,-90.4773 0/1:66:59,7:59:2346:7:281:-5.79399,0,-191.431 dDocent_Contig_5450 110 . G A 188.147 . AB=0.322581;ABP=11.486;AC=2;AF=0.333333;AN=6;AO=10;CIGAR=1X1M1X;DP=89;DPB=89;DPRA=0.267241;EPP=24.725;EPPR=172.385;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=0;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=344;QR=2521;RO=78;RPL=0;RPP=24.725;RPPR=172.385;RPR=10;RUN=1;SAF=0;SAP=24.725;SAR=10;SRF=0;SRP=172.385;SRR=78;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|0:58:57,0:57:1845:0:0:0,-17.1587,-166.23 0|1:13:11,2:11:342:2:69:-2.63927,0,-27.1681 0|1:18:10,8:10:334:8:275:-19.6663,0,-24.9661 dDocent_Contig_5451 123 . C A 31.4113 . AB=0.119048;ABP=55.9529;AC=2;AF=0.333333;AN=6;AO=5;CIGAR=2X;DP=53;DPB=53;DPRA=1.90909;EPP=13.8677;EPPR=107.241;GTI=0;LEN=1;MEANALT=1;MQM=44;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=0;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=189;QR=1624;RO=48;RPL=0;RPP=13.8677;RPPR=107.241;RPR=5;RUN=1;SAF=0;SAP=13.8677;SAR=5;SRF=0;SRP=107.241;SRR=48;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|1:30:26,4:26:883:4:152:-4.66222,0,-70.7465 0|0:11:11,0:11:368:0:0:0,-3.31133,-33.4435 0|1:12:11,1:11:373:1:37:-0.00864485,0,-30.2837 dDocent_Contig_5452 13 . G A 569.356 . AB=0.103791;ABP=1513.8;AC=2;AF=0.333333;AN=6;AO=138;CIGAR=1X;DP=1506;DPB=1506;DPRA=0;EPP=302.673;EPPR=2960.56;GTI=0;LEN=1;MEANALT=2;MQM=58.087;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=0.804348;PAIREDR=0.884728;PAO=0;PQA=0;PQR=0;PRO=0;QA=5362;QR=54221;RO=1362;RPL=0;RPP=302.673;RPPR=2960.56;RPR=138;RUN=1;SAF=138;SAP=302.673;SAR=0;SRF=1362;SRP=2960.56;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:680:609,70:609:24264:70:2733:-34.9277,0,-1976.85 0/0:398:374,23:374:14829:23:885:0,-39.952,-1253.53 0/1:428:379,45:379:15128:45:1744:-25.5308,0,-1232.29 dDocent_Contig_5453 7 . A G 368.483 . AB=0.0925926;ABP=158.713;AC=0;AF=0;AN=6;AO=10;CIGAR=2X9M1X3M;DP=199;DPB=194.467;DPRA=0;EPP=24.725;EPPR=235.358;GTI=0;LEN=1;MEANALT=9;MQM=16.7;MQMR=60;NS=3;NUMALT=7;ODDS=2.77556e-17;PAIRED=0;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=167;QR=4114;RO=107;RPL=0;RPP=24.725;RPPR=235.358;RPR=10;RUN=1;SAF=10;SAP=24.725;SAR=0;SRF=107;SRP=235.358;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|0:91:56,7,3,0,2,6,1,13:56:2145:7,3,0,2,6,1,13:168,48,0,56,229,40,518:-25.8569,-31.6149,-205.585,-40.1114,-205.082,-215.288,-42.7146,-207.693,-216.191,-218.803,-38.2783,-203.257,-211.756,-214.367,-213.765,-23.9123,-188.906,-197.404,-200.015,-195.58,-198.209,-39.4165,-204.397,-212.896,-215.507,-211.071,-196.72,-215.206,0,-165.03,-173.529,-176.139,-171.703,-157.351,-172.843,-172.226 0|0:49:19,7,4,6,0,0,3,6:19:722:7,4,6,0,0,3,6:168,64,114,0,0,39,242:-14.275,-8.87541,-66.0515,-16.5162,-64.6838,-74.5859,-13.1213,-61.293,-68.923,-70.5916,-19.9946,-68.1587,-75.7901,-72.3977,-79.2686,-19.9946,-68.1587,-75.7901,-72.3977,-79.2686,-79.2686,-18.1838,-66.3496,-73.98,-70.5886,-77.4565,-77.4565,-76.5534,0,-48.1919,-55.8249,-52.4322,-59.3031,-59.3031,-57.4915,-57.4969 0|0:59:32,3,6,4,4,0,2,0:32:1247:3,6,4,4,0,2,0:72,105,53,144,0,26,0:-2.14662,-7.01004,-108.721,-5.74743,-103.599,-106.553,-9.27223,-107.118,-105.855,-110.674,0,-97.8703,-96.6064,-100.125,-101.428,-11.7796,-109.624,-108.359,-111.878,-102.632,-114.386,-10.5704,-108.416,-107.152,-110.67,-101.423,-113.177,-112.575,-11.7796,-109.624,-108.359,-111.878,-102.632,-114.386,-113.177,-114.386 dDocent_Contig_5455 17 . T A 319.815 . AB=0.234375;ABP=42.2325;AC=1;AF=0.166667;AN=6;AO=15;CIGAR=1X;DP=154;DPB=154;DPRA=1.42222;EPP=35.5824;EPPR=304.845;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=586;QR=5583;RO=139;RPL=0;RPP=35.5824;RPPR=304.845;RPR=15;RUN=1;SAF=15;SAP=35.5824;SAR=0;SRF=139;SRP=304.845;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:72:72,0:72:2880:0:0:0,-21.6742,-259.299 0/0:18:18,0:18:729:0:0:0,-5.41854,-65.9355 0/1:64:49,15:49:1974:15:586:-33.8054,0,-158.581 dDocent_Contig_5456 14 . A G 1872.9 . AB=0.573529;ABP=6.20364;AC=4;AF=0.666667;AN=6;AO=60;CIGAR=1X;DP=89;DPB=89;DPRA=0;EPP=133.299;EPPR=65.983;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=2337;QR=1133;RO=29;RPL=0;RPP=133.299;RPPR=65.983;RPR=60;RUN=1;SAF=60;SAP=133.299;SAR=0;SRF=29;SRP=65.983;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:29:12,17:12:474:17:651:-50.1909,0,-34.282 1/1:21:0,21:0:0:21:826:-74.658,-6.32163,0 0/1:39:17,22:17:659:22:860:-65.9642,0,-47.9022 dDocent_Contig_5457 16 . G C 509.815 . AB=0.231481;ABP=70.6476;AC=3;AF=0.5;AN=6;AO=25;CIGAR=1X;DP=108;DPB=108;DPRA=0;EPP=57.2971;EPPR=183.243;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=977;QR=3289;RO=83;RPL=0;RPP=57.2971;RPPR=183.243;RPR=25;RUN=1;SAF=25;SAP=57.2971;SAR=0;SRF=83;SRP=183.243;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:50:35,15:35:1394:15:575:-37.0213,0,-110.663 0/1:27:21,6:21:833:6:239:-13.7566,0,-67.1578 0/1:31:27,4:27:1062:4:163:-5.7265,0,-86.5349 dDocent_Contig_5459 29 . C A 271.404 . AB=0.181818;ABP=80.3937;AC=2;AF=0.333333;AN=6;AO=17;CIGAR=1X;DP=133;DPB=133;DPRA=0;EPP=39.9253;EPPR=254.901;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=663;QR=4598;RO=116;RPL=0;RPP=39.9253;RPPR=254.901;RPR=17;RUN=1;SAF=17;SAP=39.9253;SAR=0;SRF=116;SRP=254.901;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:71:59,12:59:2382:12:472:-21.4581,0,-193.15 0/0:45:44,1:44:1698:1:36:0,-9.94807,-149.453 0/1:17:13,4:13:518:4:155:-9.20514,0,-41.8488 dDocent_Contig_5460 39 . T G 330.831 . AB=0.220779;ABP=55.1538;AC=3;AF=0.5;AN=6;AO=17;CIGAR=1X;DP=77;DPB=77;DPRA=0;EPP=39.9253;EPPR=20.5268;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=674;QR=2389;RO=60;RPL=17;RPP=39.9253;RPPR=20.5268;RPR=0;RUN=1;SAF=17;SAP=39.9253;SAR=0;SRF=60;SRP=133.299;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:22:16,6:16:634:6:234:-14.806,0,-50.7688 0/1:13:10,3:10:406:3:121:-7.36681,0,-32.987 0/1:42:34,8:34:1349:8:319:-16.4332,0,-109.029 dDocent_Contig_5462 1 . N G 96.9803 . AB=0;ABP=0;AC=2;AF=1;AN=2;AO=3;CIGAR=1X;DP=3;DPB=3;DPRA=0;EPP=9.52472;EPPR=0;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=0;NS=1;NUMALT=1;ODDS=6.68461;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=104;QR=0;RO=0;RPL=0;RPP=9.52472;RPPR=0;RPR=3;RUN=1;SAF=3;SAP=9.52472;SAR=0;SRF=0;SRP=0;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL ./.:.:.:.:.:.:.:. 1/1:3:0,3:0:0:3:104:-9.69748,-0.90309,0 ./.:.:.:.:.:.:.:. dDocent_Contig_5463 13 . T C 197.095 . AB=0;ABP=0;AC=4;AF=1;AN=4;AO=6;CIGAR=1X;DP=6;DPB=6;DPRA=0;EPP=16.0391;EPPR=0;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=0;NS=2;NUMALT=1;ODDS=0;PAIRED=0.833333;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=208;QR=0;RO=0;RPL=0;RPP=16.0391;RPPR=0;RPR=6;RUN=1;SAF=0;SAP=16.0391;SAR=6;SRF=0;SRP=0;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL ./.:.:.:.:.:.:.:. 1/1:4:0,4:0:0:4:138:-12.7604,-1.20412,0 1/1:2:0,2:0:0:2:70:-6.6474,-0.60206,0 dDocent_Contig_5464 97 . A G 282.16 . AB=0.217391;ABP=82.7883;AC=3;AF=0.5;AN=6;AO=25;CIGAR=1X;DP=115;DPB=115;DPRA=0;EPP=57.2971;EPPR=196.271;GTI=0;LEN=1;MEANALT=1.33333;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=750;QR=3031;RO=89;RPL=25;RPP=57.2971;RPPR=196.271;RPR=0;RUN=1;SAF=25;SAP=57.2971;SAR=0;SRF=89;SRP=196.271;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:51:42,8:42:1444:8:255:-7.87425,0,-114.865 0/1:33:27,6:27:903:6:184:-6.92925,0,-71.6412 0/1:31:20,11:20:684:11:311:-18.9354,0,-52.5481 dDocent_Contig_5465 11 . T A 83.4148 . AB=0.156863;ABP=55.1682;AC=2;AF=0.333333;AN=6;AO=12;CIGAR=1X;DP=122;DPB=122;DPRA=0;EPP=29.068;EPPR=241.872;GTI=0;LEN=1;MEANALT=1;MQM=35.9167;MQMR=54.9273;NS=3;NUMALT=1;ODDS=0;PAIRED=0.25;PAIREDR=0.945455;PAO=0;PQA=0;PQR=0;PRO=0;QA=481;QR=4435;RO=110;RPL=0;RPP=29.068;RPPR=241.872;RPR=12;RUN=1;SAF=12;SAP=29.068;SAR=0;SRF=110;SRP=241.872;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:71:67,4:67:2705:4:154:0,-10.8908,-229.762 0/1:7:5,2:5:203:2:82:-4.70157,0,-11.8586 0/1:44:38,6:38:1527:6:245:-7.16251,0,-121.154 dDocent_Contig_5466 7 . A T 1503.83 . AB=0.56383;ABP=6.33681;AC=3;AF=0.5;AN=6;AO=53;CIGAR=1X;DP=94;DPB=94;DPRA=0;EPP=85.9769;EPPR=19.1015;GTI=0;LEN=1;MEANALT=1.33333;MQM=59.7358;MQMR=59.7436;NS=3;NUMALT=1;ODDS=0;PAIRED=0;PAIREDR=0.717949;PAO=0;PQA=0;PQR=0;PRO=0;QA=2034;QR=1481;RO=39;RPL=0;RPP=118.098;RPPR=87.6977;RPR=53;RUN=1;SAF=49;SAP=85.9769;SAR=4;SRF=28;SRP=19.1015;SRR=11;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:47:15,30:15:573:30:1159:-90.6728,0,-37.9677 0/1:25:10,15:10:384:15:570:-44.0468,0,-27.3904 0/1:22:14,8:14:524:8:305:-21.1865,0,-40.8779 dDocent_Contig_5467 49 . G A 83.5954 . AB=0.136986;ABP=86.5674;AC=2;AF=0.333333;AN=6;AO=12;CIGAR=1X;DP=98;DPB=98;DPRA=0;EPP=29.068;EPPR=189.757;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=0.976744;PAO=0;PQA=0;PQR=0;PRO=0;QA=423;QR=3415;RO=86;RPL=0;RPP=29.068;RPPR=189.757;RPR=12;RUN=1;SAF=12;SAP=29.068;SAR=0;SRF=86;SRP=189.757;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:47:40,7:40:1584:7:263:-9.87923,0,-128.64 0/1:26:23,3:23:903:3:87:-0.290778,0,-73.7486 0/0:25:23,2:23:928:2:73:0,-0.594646,-76.8915 dDocent_Contig_5468 19 . A G 1202.32 . AB=0.100962;ABP=290.689;AC=3;AF=0.5;AN=6;AO=21;CIGAR=1X3M;DP=208;DPB=208;DPRA=0;EPP=48.6112;EPPR=296.159;GTI=0;LEN=1;MEANALT=2.33333;MQM=60;MQMR=60;NS=3;NUMALT=3;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=836;QR=5379;RO=135;RPL=0;RPP=48.6112;RPPR=296.159;RPR=21;RUN=1;SAF=21;SAP=48.6112;SAR=0;SRF=135;SRP=296.159;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|1:101:75,22,4,0:75:2985:22,4,0:866,164,0:-48.6477,0,-239.14,-57.6861,-232.226,-302.259,-71.2249,-245.763,-303.464,-317 0|1:38:18,7,10,3:18:721:7,10,3:277,394,122:-26.9899,-9.61162,-66.9055,0,-36.6042,-56.3897,-22.3434,-58.9487,-49.3359,-80.8423 0|1:69:42,20,7,0:42:1673:20,7,0:765,278,0:-50.1177,0,-131.742,-39.8719,-114.878,-175.537,-62.761,-137.763,-177.645,-200.53 dDocent_Contig_5471 57 . C T 161.058 . AB=0.25;ABP=20.3821;AC=1;AF=0.166667;AN=6;AO=8;CIGAR=1X;DP=54;DPB=54;DPRA=2.90909;EPP=20.3821;EPPR=102.898;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=299;QR=1770;RO=46;RPL=8;RPP=20.3821;RPPR=102.898;RPR=0;RUN=1;SAF=8;SAP=20.3821;SAR=0;SRF=46;SRP=102.898;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:32:24,8:24:917:8:299:-17.6287,0,-73.2046 0/0:7:7,0:7:269:0:0:0,-2.10721,-24.5738 0/0:15:15,0:15:584:0:0:0,-4.51545,-52.8962 dDocent_Contig_5472 67 . C T 84.6956 . AB=0.285714;ABP=8.59409;AC=1;AF=0.166667;AN=6;AO=4;CIGAR=1X;DP=71;DPB=71;DPRA=0.491228;EPP=11.6962;EPPR=148.499;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=157;QR=2605;RO=67;RPL=4;RPP=11.6962;RPPR=148.499;RPR=0;RUN=1;SAF=4;SAP=11.6962;SAR=0;SRF=67;SRP=148.499;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:34:34,0:34:1301:0:0:0,-10.235,-117.36 0/1:14:10,4:10:396:4:157:-10.2935,0,-31.7828 0/0:23:23,0:23:908:0:0:0,-6.92369,-82.0296 dDocent_Contig_5474 54 . T C 10256 . AB=0.829897;ABP=369.788;AC=3;AF=0.5;AN=6;AO=322;CIGAR=1X;DP=388;DPB=388;DPRA=0;EPP=702.224;EPPR=146.327;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=12749;QR=2288;RO=66;RPL=322;RPP=702.224;RPPR=146.327;RPR=0;RUN=1;SAF=322;SAP=702.224;SAR=0;SRF=66;SRP=146.327;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:187:28,159:28:963:159:6367:-516.469,0,-30.6804 0/1:67:7,60:7:236:60:2302:-187.182,0,-1.39981 0/1:134:31,103:31:1089:103:4080:-326.84,0,-57.9655 dDocent_Contig_5475 7 . A G 617.72 . AB=0.237154;ABP=306.656;AC=2;AF=0.333333;AN=6;AO=166;CIGAR=1X;DP=765;DPB=765;DPRA=0;EPP=363.475;EPPR=1297.21;GTI=0;LEN=1;MEANALT=2;MQM=24.4699;MQMR=57.5604;NS=3;NUMALT=1;ODDS=0;PAIRED=0.981928;PAIREDR=0.552013;PAO=0;PQA=0;PQR=0;PRO=0;QA=5250;QR=22711;RO=596;RPL=0;RPP=363.475;RPPR=1297.21;RPR=166;RUN=1;SAF=166;SAP=363.475;SAR=0;SRF=596;SRP=1297.21;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:394:303,90:303:11558:90:2856:-58.5734,0,-913.437 0/1:112:81,30:81:3067:30:937:-6.72047,0,-240.887 0/0:259:212,46:212:8086:46:1457:0,-0.157101,-645.935 dDocent_Contig_5476 16 . T C 2300.53 . AB=0.414201;ABP=13.8163;AC=4;AF=0.666667;AN=6;AO=70;CIGAR=1X3M;DP=169;DPB=169;DPRA=0;EPP=155.013;EPPR=92.0407;GTI=0;LEN=1;MEANALT=3.66667;MQM=59.8571;MQMR=60;NS=3;NUMALT=3;ODDS=2.77556e-17;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=2797;QR=1624;RO=41;RPL=0;RPP=155.013;RPPR=92.0407;RPR=70;RUN=1;SAF=70;SAP=155.013;SAR=0;SRF=41;SRP=92.0407;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 1|1:83:11,0,29,39:11:438:0,29,39:0,1146,1573:-143.809,-147.12,-183.196,-93.6325,-129.702,-120.972,-17.3692,-53.4766,0,-41.7364 0|1:23:6,2,6,7:6:239:2,6,7:64,234,276:-20.9423,-17.8678,-36.9655,-8.97585,-23.798,-26.8674,0,-14.8431,-5.95203,-17.6167 0|1:63:24,0,15,24:24:947:0,15,24:0,599,948:-70.8252,-78.0499,-155.98,-44.4932,-122.407,-117.892,0,-77.983,-44.4262,-70.7583 dDocent_Contig_5477 17 . A C 670.287 . AB=0.304348;ABP=33.5997;AC=3;AF=0.5;AN=6;AO=28;CIGAR=1X;DP=92;DPB=92;DPRA=0;EPP=63.8115;EPPR=141.985;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=0.964286;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=1102;QR=2523;RO=64;RPL=0;RPP=63.8115;RPPR=141.985;RPR=28;RUN=1;SAF=28;SAP=63.8115;SAR=0;SRF=64;SRP=141.985;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:46:34,12:34:1348:12:472:-28.9771,0,-107.735 0/1:18:13,5:13:517:5:192:-12.228,0,-41.4569 0/1:28:17,11:17:658:11:438:-31.3464,0,-51.1218 dDocent_Contig_5478 15 . G A 766.322 . AB=0.19898;ABP=157.273;AC=3;AF=0.5;AN=6;AO=39;CIGAR=1X;DP=196;DPB=196;DPRA=0;EPP=87.6977;EPPR=343.931;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=57.8217;NS=3;NUMALT=1;ODDS=0;PAIRED=0;PAIREDR=0.203822;PAO=0;PQA=0;PQR=0;PRO=0;QA=1557;QR=6325;RO=157;RPL=0;RPP=87.6977;RPPR=343.931;RPR=39;RUN=1;SAF=39;SAP=87.6977;SAR=0;SRF=157;SRP=343.931;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:100:75,25:75:3005:25:1004:-60.5487,0,-231.4 0/1:36:29,7:29:1169:7:270:-13.8252,0,-94.6232 0/1:60:53,7:53:2151:7:283:-7.7812,0,-168.914 dDocent_Contig_5479 50 . T C 38.3861 . AB=0.105263;ABP=80.1547;AC=1;AF=0.166667;AN=6;AO=8;CIGAR=1X;DP=114;DPB=114;DPRA=1.78;EPP=20.3821;EPPR=233.186;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=3.46945e-18;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=328;QR=3924;RO=106;RPL=8;RPP=20.3821;RPPR=233.186;RPR=0;RUN=1;SAF=8;SAP=20.3821;SAR=0;SRF=106;SRP=233.186;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:57:51,6:51:1876:6:246:-5.36141,0,-151.909 0/0:25:25,0:25:945:0:0:0,-7.52575,-85.3635 0/0:32:30,2:30:1103:2:82:0,-1.85328,-91.7829 dDocent_Contig_5480 8 . G A 3183.28 . AB=0.125;ABP=22.5536;AC=1;AF=0.166667;AN=6;AO=2;CIGAR=1M1X1M;DP=171;DPB=278;DPRA=0;EPP=7.35324;EPPR=137.642;GTI=0;LEN=1;MEANALT=2;MQM=60;MQMR=60;NS=3;NUMALT=2;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=74;QR=2338;RO=62;RPL=0;RPP=7.35324;RPPR=137.642;RPR=2;RUN=1;SAF=2;SAP=7.35324;SAR=0;SRF=62;SRP=137.642;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|0:100:39,61,0:39:1480:61,0:2367,0:-183.12,0,-103.378,-194.86,-121.74,-316.218 0|1:16:2,12,2:2:73:12,2:462,74:-37.4364,-0.0941349,-2.44373,-31.987,0,-37.3466 0|0:55:21,34,0:21:785:34,0:1327,0:-103.152,0,-54.4186,-109.474,-64.6536,-173.748 dDocent_Contig_5481 45 . G A 2793.77 . AB=0.42437;ABP=14.8348;AC=3;AF=0.5;AN=6;AO=101;CIGAR=1X;DP=238;DPB=238;DPRA=0;EPP=222.329;EPPR=300.502;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=3939;QR=5345;RO=137;RPL=0;RPP=222.329;RPPR=300.502;RPR=101;RUN=1;SAF=101;SAP=222.329;SAR=0;SRF=137;SRP=300.502;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:141:89,52:89:3446:52:2029:-140.353,0,-267.745 0/1:23:2,21:2:81:21:828:-67.9132,0,-0.762044 0/1:74:46,28:46:1818:28:1082:-75.3877,0,-141.563 dDocent_Contig_5483 19 . T C 691.36 . AB=0.0454545;ABP=358.342;AC=0;AF=0;AN=6;AO=9;CIGAR=1X1M1X1M1X5M;DP=286;DPB=286;DPRA=0;EPP=22.5536;EPPR=393.875;GTI=0;LEN=1;MEANALT=7;MQM=60;MQMR=60;NS=3;NUMALT=5;ODDS=0;PAIRED=0;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=314;QR=7106;RO=180;RPL=0;RPP=22.5536;RPPR=393.875;RPR=9;RUN=1;SAF=9;SAP=22.5536;SAR=0;SRF=180;SRP=393.875;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|0:138:83,6,7,0,20,16:83:3279:6,7,0,20,16:210,278,0,765,641:-27.8387,-35.7381,-303.776,-29.931,-282.695,-297.672,-52.8242,-305.582,-299.78,-322.668,-4.18368,-256.927,-251.124,-274.012,-267.991,0,-252.775,-246.972,-269.86,-221.205,-265.043 0|0:60:46,3,0,3,6,1:46:1801:3,0,3,6,1:104,0,113,238,40:-1.91411,-7.2999,-154.547,-15.7615,-155.45,-163.902,-10.7861,-150.457,-158.908,-158.005,0,-139.701,-148.152,-143.16,-146.346,-12.46,-152.155,-160.607,-155.613,-144.857,-160.306 0|0:88:51,0,2,3,11,18:51:2026:0,2,3,11,18:0,80,113,421,728:-44.7152,-60.0677,-226.883,-53.4751,-220.293,-219.691,-56.5177,-223.324,-216.734,-222.421,-32.8652,-199.671,-193.08,-196.113,-196.36,0,-166.855,-160.264,-163.297,-139.644,-161.436 dDocent_Contig_5484 63 . T A 41.2091 . AB=0.116667;ABP=79.5909;AC=2;AF=0.333333;AN=6;AO=7;CIGAR=1X;DP=99;DPB=99;DPRA=0.769231;EPP=18.2106;EPPR=202.786;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=277;QR=3644;RO=92;RPL=7;RPP=18.2106;RPPR=202.786;RPR=0;RUN=1;SAF=7;SAP=18.2106;SAR=0;SRF=92;SRP=202.786;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:47:42,5:42:1668:5:195:-3.77308,0,-136.202 0/1:13:11,2:11:444:2:82:-3.86629,0,-36.4024 0/0:39:39,0:39:1532:0:0:0,-11.7402,-138.111 dDocent_Contig_5485 78 . C T 1157.89 . AB=0.52439;ABP=3.434;AC=2;AF=0.333333;AN=6;AO=43;CIGAR=1X;DP=99;DPB=99;DPRA=2.41176;EPP=96.3836;EPPR=124.613;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=1578;QR=2023;RO=56;RPL=43;RPP=96.3836;RPPR=124.613;RPR=0;RUN=1;SAF=43;SAP=96.3836;SAR=0;SRF=56;SRP=124.613;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:72:30,42:30:1084:42:1541:-117.305,0,-76.1933 0/1:10:9,1:9:331:1:37:-0.687529,0,-27.1305 0/0:17:17,0:17:608:0:0:0,-5.11751,-55.0523 dDocent_Contig_5486 37 . G A 176.955 . AB=0.100629;ABP=443.56;AC=2;AF=0.333333;AN=6;AO=35;CIGAR=1X;DP=449;DPB=449;DPRA=0;EPP=79.0118;EPPR=902;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=1404;QR=16527;RO=414;RPL=0;RPP=79.0118;RPPR=902;RPR=35;RUN=1;SAF=35;SAP=79.0118;SAR=0;SRF=414;SRP=902;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:222:200,22:200:8000:22:891:-13.6685,0,-652.724 0/1:96:86,10:86:3390:10:401:-7.5499,0,-276.267 0/0:131:128,3:128:5137:3:112:0,-28.9892,-451.738 dDocent_Contig_5488 89 . C A 155.261 . AB=0.28;ABP=13.5202;AC=1;AF=0.166667;AN=6;AO=7;CIGAR=1X;DP=50;DPB=50;DPRA=2;EPP=18.2106;EPPR=96.3836;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=269;QR=1631;RO=43;RPL=7;RPP=18.2106;RPPR=96.3836;RPR=0;RUN=1;SAF=7;SAP=18.2106;SAR=0;SRF=43;SRP=96.3836;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:25:18,7:18:692:7:269:-17.049,0,-55.0881 0/0:8:8,0:8:310:0:0:0,-2.40824,-28.2636 0/0:17:17,0:17:629:0:0:0,-5.11751,-56.9466 dDocent_Contig_5490 22 . A C 1268.66 . AB=0.478723;ABP=3.37991;AC=3;AF=0.5;AN=6;AO=45;CIGAR=1X1M;DP=94;DPB=94;DPRA=0;EPP=100.727;EPPR=105.07;GTI=0;LEN=1;MEANALT=1.33333;MQM=60;MQMR=60;NS=3;NUMALT=2;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=1772;QR=1826;RO=47;RPL=0;RPP=100.727;RPPR=105.07;RPR=45;RUN=1;SAF=45;SAP=100.727;SAR=0;SRF=47;SRP=105.07;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|1:26:12,0,14:12:437:0,14:0,538:-40.9242,-44.5365,-80.2091,0,-36.0457,-31.8312 0|1:38:20,2,16:20:792:2,16:79,632:-45.9802,-45.4999,-110.084,0,-58.6852,-60.3696 0|1:30:15,0,15:15:597:0,15:0,602:-45.4849,-50.0003,-99.154,0,-49.5529,-45.0374 dDocent_Contig_5491 65 . G T 405.414 . AB=0.253521;ABP=40.4758;AC=2;AF=0.333333;AN=6;AO=18;CIGAR=1M1I1X;DP=88;DPB=97;DPRA=2.08824;EPP=42.0968;EPPR=152.842;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=719;QR=2744;RO=69;RPL=18;RPP=42.0968;RPPR=152.842;RPR=0;RUN=1;SAF=18;SAP=42.0968;SAR=0;SRF=69;SRP=152.842;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|1:40:28,12:28:1114:12:477:-31.2389,0,-88.5006 0|0:17:16,0:16:640:0:0:0,-4.81648,-57.5528 0|1:31:25,6:25:990:6:242:-12.8254,0,-80.0662 dDocent_Contig_5492 32 . G A 1524.23 . AB=0.495327;ABP=3.03059;AC=3;AF=0.5;AN=6;AO=53;CIGAR=1X;DP=107;DPB=107;DPRA=0;EPP=118.098;EPPR=120.27;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=6.93889e-18;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=2102;QR=2158;RO=54;RPL=0;RPP=118.098;RPPR=120.27;RPR=53;RUN=1;SAF=53;SAP=118.098;SAR=0;SRF=54;SRP=120.27;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:53:31,22:31:1241:22:859:-61.6601,0,-96.0085 0/1:37:19,18:19:754:18:722:-54.1671,0,-57.044 0/1:17:4,13:4:163:13:521:-42.119,0,-9.94092 dDocent_Contig_5493 13 . T C 6281.92 . AB=0.715356;ABP=110.567;AC=4;AF=0.666667;AN=6;AO=191;CIGAR=1X4M;DP=267;DPB=267;DPRA=0;EPP=417.762;EPPR=87.6977;GTI=0;LEN=1;MEANALT=3;MQM=60;MQMR=60;NS=3;NUMALT=3;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=7673;QR=1551;RO=39;RPL=0;RPP=417.762;RPPR=87.6977;RPR=191;RUN=1;SAF=191;SAP=417.762;SAR=0;SRF=39;SRP=87.6977;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|1:178:29,25,0,123:29:1159:25,0,123:994,0,4968:-400.822,-327.717,-415.655,-409.552,-423.181,-505.016,0,-13.6311,-95.4657,-58.439 1|1:42:0,3,4,35:0:0:3,4,35:119,160,1373:-126.07,-116.274,-115.371,-112.889,-103.093,-111.685,-13.1822,-3.38797,0,-2.64617 0|1:47:10,2,2,33:10:392:2,2,33:82,80,1332:-106.791,-103.033,-134.664,-103.212,-128.676,-134.842,0,-25.4554,-25.635,-22.2919 dDocent_Contig_5494 18 . T C 104.99 . AB=0.126761;ABP=88.9211;AC=1;AF=0.166667;AN=6;AO=12;CIGAR=1X;DP=151;DPB=151;DPRA=3.275;EPP=29.068;EPPR=304.845;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=0.978417;PAO=0;PQA=0;PQR=0;PRO=0;QA=490;QR=5313;RO=139;RPL=0;RPP=29.068;RPPR=304.845;RPR=12;RUN=1;SAF=12;SAP=29.068;SAR=0;SRF=139;SRP=304.845;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:71:62,9:62:2428:9:367:-12.0219,0,-197.322 0/0:20:20,0:20:726:0:0:0,-6.0206,-65.6468 0/0:60:57,3:57:2159:3:123:0,-6.59701,-183.056 dDocent_Contig_5495 14 . T A 1802.48 . AB=0.45;ABP=6.05036;AC=3;AF=0.5;AN=6;AO=63;CIGAR=1X;DP=140;DPB=140;DPRA=0;EPP=139.813;EPPR=170.214;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=2522;QR=2903;RO=77;RPL=0;RPP=139.813;RPPR=170.214;RPR=63;RUN=1;SAF=63;SAP=139.813;SAR=0;SRF=77;SRP=170.214;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:63:32,31:32:1191:31:1244:-93.2626,0,-88.5171 0/1:41:18,23:18:680:23:921:-70.854,0,-49.187 0/1:36:27,9:27:1032:9:357:-21.6538,0,-82.3512 dDocent_Contig_5497 21 . A T 3760.66 . AB=0.455556;ABP=7.64277;AC=3;AF=0.5;AN=6;AO=123;CIGAR=1M1X6M;DP=270;DPB=265;DPRA=0;EPP=270.101;EPPR=198.443;GTI=0;LEN=1;MEANALT=4.33333;MQM=60;MQMR=60;NS=3;NUMALT=3;ODDS=5.55112e-17;PAIRED=0.96748;PAIREDR=0.966667;PAO=0;PQA=0;PQR=0;PRO=0;QA=4958;QR=3501;RO=90;RPL=0;RPP=270.101;RPPR=198.443;RPR=123;RUN=1;SAF=123;SAP=270.101;SAR=0;SRF=90;SRP=198.443;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|1:141:45,6,22,66:45:1762:6,22,66:222,872,2657:-205.444,-200.834,-343.904,-147.218,-273.938,-285.472,0,-126.727,-73.1086,-125.016 0|1:64:20,5,9,29:20:772:5,9,29:203,362,1174:-90.7946,-80.0717,-141.962,-66.9809,-113.632,-127.666,0,-46.6543,-33.561,-54.6703 0|1:65:25,3,7,28:25:967:3,7,28:122,283,1127:-85.3507,-82.8129,-161.328,-69.5443,-138.898,-146.854,0,-69.3472,-56.077,-70.9828 dDocent_Contig_5498 30 . A C 3261.66 . AB=0.439689;ABP=11.1301;AC=3;AF=0.5;AN=6;AO=113;CIGAR=2X;DP=257;DPB=257;DPRA=0;EPP=248.387;EPPR=315.702;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=1.38778e-17;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=4537;QR=5633;RO=144;RPL=0;RPP=248.387;RPPR=315.702;RPR=113;RUN=1;SAF=113;SAP=248.387;SAR=0;SRF=144;SRP=315.702;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|1:135:68,67:68:2665:67:2679:-200.59,0,-199.354 0|1:47:30,17:30:1165:17:682:-47.5627,0,-90.977 0|1:75:46,29:46:1803:29:1176:-83.5367,0,-139.915 dDocent_Contig_5499 40 . C T 34.448 . AB=0.125;ABP=42.0968;AC=1;AF=0.166667;AN=6;AO=5;CIGAR=1X;DP=83;DPB=83;DPRA=1.30435;EPP=13.8677;EPPR=172.385;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=199;QR=3146;RO=78;RPL=0;RPP=13.8677;RPPR=172.385;RPR=5;RUN=1;SAF=5;SAP=13.8677;SAR=0;SRF=78;SRP=172.385;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:32:28,4:28:1137:4:158:-4.96752,0,-92.9757 0/0:23:23,0:23:928:0:0:0,-6.92369,-83.8219 0/0:28:27,1:27:1081:1:41:0,-4.33427,-93.4827 dDocent_Contig_5500 14 . T A 603.44 . AB=0.185629;ABP=146.366;AC=1;AF=0.166667;AN=6;AO=32;CIGAR=1X;DP=278;DPB=278;DPRA=1.2375;EPP=72.4974;EPPR=537.193;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=1283;QR=9890;RO=246;RPL=0;RPP=72.4974;RPPR=537.193;RPR=32;RUN=1;SAF=32;SAP=72.4974;SAR=0;SRF=246;SRP=537.193;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:167:136,31:136:5473:31:1243:-61.8669,0,-442.103 0/0:31:30,1:30:1199:1:40:0,-5.33625,-104.186 0/0:80:80,0:80:3218:0:0:0,-24.0824,-289.677 dDocent_Contig_5501 7 . A G 84.2491 . AB=0.181818;ABP=41.702;AC=2;AF=0.333333;AN=6;AO=8;CIGAR=1X;DP=96;DPB=96;DPRA=0.423077;EPP=20.3821;EPPR=194.1;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=3.46945e-18;PAIRED=1;PAIREDR=0.977273;PAO=0;PQA=0;PQR=0;PRO=0;QA=272;QR=3351;RO=88;RPL=0;RPP=20.3821;RPPR=194.1;RPR=8;RUN=1;SAF=8;SAP=20.3821;SAR=0;SRF=88;SRP=194.1;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:52:52,0:52:1979:0:0:0,-15.6536,-178.346 0/1:13:11,2:11:409:2:67:-2.44809,0,-33.244 0/1:31:25,6:25:963:6:205:-9.45095,0,-77.6516 dDocent_Contig_5503 161 . G A 39.7592 . AB=0.113636;ABP=60.0608;AC=1;AF=0.166667;AN=6;AO=5;CIGAR=1X;DP=78;DPB=78;DPRA=2.58824;EPP=13.8677;EPPR=128.688;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=204;QR=2770;RO=73;RPL=5;RPP=13.8677;RPPR=128.688;RPR=0;RUN=1;SAF=0;SAP=13.8677;SAR=5;SRF=0;SRP=161.528;SRR=73;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:44:39,5:39:1490:5:204:-5.49871,0,-121.1 0/0:5:5,0:5:194:0:0:0,-1.50515,-17.8317 0/0:29:29,0:29:1086:0:0:0,-8.72987,-98.0241 dDocent_Contig_5504 7 . A T 416.202 . AB=0.22449;ABP=67.6227;AC=1;AF=0.166667;AN=6;AO=26;CIGAR=1X;DP=290;DPB=290;DPRA=2.34314;EPP=59.4686;EPPR=576.279;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=963;QR=10065;RO=264;RPL=0;RPP=59.4686;RPPR=576.279;RPR=26;RUN=1;SAF=26;SAP=59.4686;SAR=0;SRF=264;SRP=576.279;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:141:137,4:137:5225:4:156:0,-28.0279,-455.843 0/0:51:51,0:51:1909:0:0:0,-15.3525,-172.059 0/1:98:76,22:76:2931:22:807:-43.4441,0,-234.458 dDocent_Contig_5505 21 . C T 380.308 . AB=0.0929054;ABP=1707.35;AC=2;AF=0.333333;AN=6;AO=139;CIGAR=1X;DP=1739;DPB=1739;DPRA=0;EPP=304.845;EPPR=3191.76;GTI=0;LEN=1;MEANALT=3;MQM=60;MQMR=59.9846;NS=3;NUMALT=1;ODDS=0;PAIRED=0.683453;PAIREDR=0.435701;PAO=0;PQA=0;PQR=0;PRO=0;QA=5445;QR=62231;RO=1563;RPL=0;RPP=304.845;RPPR=3397.02;RPR=139;RUN=1;SAF=139;SAP=304.845;SAR=0;SRF=1539;SRP=3191.76;SRR=24;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:683:607,58:607:24227:58:2249:-1.9988,0,-1977.7 0/0:555:520,29:520:20607:29:1120:0,-64.5441,-1751.86 0/1:501:436,52:436:17397:52:2076:-39.7301,0,-1416.94 dDocent_Contig_5506 31 . A T 4642.41 . AB=0.830508;ABP=170.95;AC=3;AF=0.5;AN=6;AO=147;CIGAR=1M1D1X;DP=177;DPB=128;DPRA=0;EPP=272.229;EPPR=68.1545;GTI=0;LEN=1;MEANALT=1;MQM=58.4558;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=0.884354;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=5819;QR=1171;RO=30;RPL=0;RPP=322.217;RPPR=68.1545;RPR=147;RUN=1;SAF=141;SAP=272.229;SAR=6;SRF=30;SRP=68.1545;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|1:108:10,98:10:385:98:3920:-319.955,0,-2.49156 0|1:30:7,23:7:273:23:891:-70.9748,0,-15.9061 0|1:39:13,26:13:513:26:1008:-78.7899,0,-34.7748 dDocent_Contig_5507 77 . G A 1645.94 . AB=0.75;ABP=46.4397;AC=3;AF=0.5;AN=6;AO=60;CIGAR=1X;DP=80;DPB=80;DPRA=0;EPP=133.299;EPPR=46.4397;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=2147;QR=724;RO=20;RPL=60;RPP=133.299;RPPR=46.4397;RPR=0;RUN=1;SAF=60;SAP=133.299;SAR=0;SRF=20;SRP=46.4397;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:22:7,15:7:255:15:536:-41.9492,0,-16.6789 0/1:40:7,33:7:255:33:1190:-95.3626,0,-11.2607 0/1:18:6,12:6:214:12:421:-32.8052,0,-14.1892 dDocent_Contig_5508 42 . T A 35.3575 . AB=0.128205;ABP=49.8362;AC=2;AF=0.333333;AN=6;AO=5;CIGAR=1X;DP=45;DPB=45;DPRA=3.25;EPP=13.8677;EPPR=89.8692;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=200;QR=1570;RO=40;RPL=0;RPP=13.8677;RPPR=89.8692;RPR=5;RUN=1;SAF=5;SAP=13.8677;SAR=0;SRF=40;SRP=89.8692;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:28:25,3:25:979:3:121:-2.85136,0,-79.9862 0/1:11:9,2:9:356:2:79:-4.1863,0,-29.0904 0/0:6:6,0:6:235:0:0:0,-1.80618,-21.5207 dDocent_Contig_5509 44 . G T 1541.03 . AB=0.212121;ABP=264.311;AC=3;AF=0.5;AN=6;AO=77;CIGAR=1X;DP=363;DPB=363;DPRA=0;EPP=170.214;EPPR=624.051;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=2978;QR=11296;RO=286;RPL=0;RPP=170.214;RPPR=624.051;RPR=77;RUN=1;SAF=77;SAP=170.214;SAR=0;SRF=286;SRP=624.051;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:217:169,48:169:6643:48:1857:-102.035,0,-532.287 0/1:39:34,5:34:1337:5:178:-4.62398,0,-108.852 0/1:107:83,24:83:3316:24:943:-52.9667,0,-266.29 dDocent_Contig_5527 9 . T A 78.1567 . AB=0.192308;ABP=24.391;AC=1;AF=0.166667;AN=6;AO=5;CIGAR=1X;DP=157;DPB=157;DPRA=0.396947;EPP=13.8677;EPPR=333.074;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=1.73472e-18;PAIRED=1;PAIREDR=0.993421;PAO=0;PQA=0;PQR=0;PRO=0;QA=190;QR=5836;RO=152;RPL=0;RPP=13.8677;RPPR=333.074;RPR=5;RUN=1;SAF=5;SAP=13.8677;SAR=0;SRF=152;SRP=333.074;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:69:69,0:69:2650:0:0:0,-20.7711,-238.69 0/1:26:21,5:21:812:5:190:-9.63958,0,-65.5787 0/0:62:62,0:62:2374:0:0:0,-18.6639,-213.861 dDocent_Contig_5528 38 . A G 2005.4 . AB=0.605505;ABP=13.5489;AC=3;AF=0.5;AN=6;AO=66;CIGAR=1X1M1X;DP=109;DPB=109;DPRA=0;EPP=146.327;EPPR=96.3836;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=2638;QR=1677;RO=43;RPL=0;RPP=146.327;RPPR=96.3836;RPR=66;RUN=1;SAF=66;SAP=146.327;SAR=0;SRF=43;SRP=96.3836;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|1:49:25,24:25:978:24:949:-70.9555,0,-73.5751 0|1:18:2,16:2:73:16:644:-52.8763,0,-1.51256 0|1:42:16,26:16:626:26:1045:-81.699,0,-44.0353 dDocent_Contig_5529 15 . T C 817.617 . AB=0.56;ABP=4.57376;AC=3;AF=0.5;AN=6;AO=28;CIGAR=1X;DP=50;DPB=50;DPRA=0;EPP=63.8115;EPPR=50.7827;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=1125;QR=860;RO=22;RPL=0;RPP=63.8115;RPPR=50.7827;RPR=28;RUN=1;SAF=28;SAP=63.8115;SAR=0;SRF=22;SRP=50.7827;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:30:13,17:13:528:17:678:-52.3134,0,-38.8351 0/1:12:7,5:7:251:5:204:-15.1317,0,-19.3098 0/1:8:2,6:2:81:6:243:-19.8394,0,-5.27749 dDocent_Contig_5530 14 . T C 90519.4 . AB=0;ABP=0;AC=6;AF=1;AN=6;AO=2666;CIGAR=1X;DP=2808;DPB=2808;DPRA=0;EPP=5134.48;EPPR=252.803;GTI=0;LEN=1;MEANALT=3;MQM=59.087;MQMR=59.6555;NS=3;NUMALT=1;ODDS=0;PAIRED=0.593023;PAIREDR=0.789916;PAO=0;PQA=0;PQR=0;PRO=0;QA=106210;QR=4785;RO=119;RPL=0;RPP=5792.16;RPPR=261.416;RPR=2666;RUN=1;SAF=2588;SAP=5134.48;SAR=78;SRF=118;SRP=252.803;SRR=1;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 1/1:1118:17,1093:17:682:1093:43656:-3823.56,-272.978,0 1/1:697:33,652:33:1328:652:25880:-2197.99,-86.9374,0 1/1:993:69,921:69:2775:921:36674:-3029.91,-48.579,0 dDocent_Contig_5531 8 . A G 952.703 . AB=0.41573;ABP=8.49998;AC=3;AF=0.5;AN=6;AO=37;CIGAR=1X;DP=89;DPB=89;DPRA=0;EPP=83.3548;EPPR=113.755;GTI=0;LEN=1;MEANALT=1.33333;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=0.921569;PAO=0;PQA=0;PQR=0;PRO=0;QA=1407;QR=1929;RO=51;RPL=0;RPP=83.3548;RPPR=113.755;RPR=37;RUN=1;SAF=37;SAP=83.3548;SAR=0;SRF=51;SRP=113.755;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:33:14,19:14:514:19:727:-55.8274,0,-36.6585 0/1:25:13,12:13:494:12:452:-33.5008,0,-37.2798 0/1:31:24,6:24:921:6:228:-11.465,0,-73.7868 dDocent_Contig_5532 17 . C T 876.396 . AB=0.358696;ABP=18.9659;AC=3;AF=0.5;AN=6;AO=33;CIGAR=1X;DP=92;DPB=92;DPRA=0;EPP=74.6689;EPPR=131.127;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=0.949153;PAO=0;PQA=0;PQR=0;PRO=0;QA=1331;QR=2381;RO=59;RPL=0;RPP=74.6689;RPPR=131.127;RPR=33;RUN=1;SAF=33;SAP=74.6689;SAR=0;SRF=59;SRP=131.127;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:52:33,19:33:1324:19:764:-53.4267,0,-103.764 0/1:21:13,8:13:529:8:325:-23.298,0,-41.635 0/1:19:13,6:13:528:6:242:-16.4378,0,-42.1473 dDocent_Contig_5533 46 . C T 1863.33 . AB=0.402778;ABP=14.8328;AC=2;AF=0.333333;AN=6;AO=58;CIGAR=1M1I1X3M1X1M1X;DP=144;DPB=151.25;DPRA=0;EPP=128.956;EPPR=139.813;GTI=0;LEN=1;MEANALT=2.66667;MQM=60;MQMR=60;NS=3;NUMALT=2;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=2293;QR=2482;RO=63;RPL=0;RPP=128.956;RPPR=139.813;RPR=58;RUN=1;SAF=58;SAP=128.956;SAR=0;SRF=63;SRP=139.813;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|1:79:35,41,1:35:1399:41,1:1620,38:-122.779,0,-102.902,-130.199,-112.129,-245.136 0|1:15:5,7,3:5:192:7,3:276,102:-21.2413,0,-13.6779,-14.4895,-7.52847,-29.34 0|0:50:23,10,17:23:891:10,17:397,666:-47.8354,-22.074,-92.2513,0,-40.4974,-68.066 dDocent_Contig_5534 124 . C A 70.2901 . AB=0.193548;ABP=28.2974;AC=2;AF=0.333333;AN=6;AO=6;CIGAR=2X;DP=45;DPB=45;DPRA=1.10714;EPP=16.0391;EPPR=85.5263;GTI=0;LEN=1;MEANALT=1.5;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=1.73472e-18;PAIRED=0;PAIREDR=0.789474;PAO=0;PQA=0;PQR=0;PRO=0;QA=203;QR=1283;RO=38;RPL=0;RPP=16.0391;RPPR=85.5263;RPR=6;RUN=1;SAF=0;SAP=16.0391;SAR=6;SRF=0;SRP=85.5263;SRR=38;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|0:14:14,0:14:469:0:0:0,-4.21442,-42.5319 0|1:19:17,2:17:580:2:70:-0.927826,0,-46.8039 0|1:12:7,4:7:234:4:133:-8.84083,0,-17.9473 dDocent_Contig_5535 28 . A T 368.735 . AB=0.261538;ABP=35.1147;AC=3;AF=0.5;AN=6;AO=17;CIGAR=1X;DP=65;DPB=65;DPRA=0;EPP=39.9253;EPPR=107.241;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=676;QR=1909;RO=48;RPL=0;RPP=39.9253;RPPR=107.241;RPR=17;RUN=1;SAF=17;SAP=39.9253;SAR=0;SRF=48;SRP=107.241;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:25:19,6:19:759:6:236:-14.0842,0,-61.1079 0/1:20:15,5:15:591:5:198:-12.1759,0,-47.5082 0/1:20:14,6:14:559:6:242:-16.1363,0,-44.6311 dDocent_Contig_5537 11 . C T 1477.1 . AB=0.735294;ABP=35.7101;AC=3;AF=0.5;AN=6;AO=50;CIGAR=1X;DP=68;DPB=68;DPRA=0;EPP=111.584;EPPR=42.0968;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=1919;QR=719;RO=18;RPL=0;RPP=111.584;RPPR=42.0968;RPR=50;RUN=1;SAF=50;SAP=111.584;SAR=0;SRF=18;SRP=42.0968;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:21:9,12:9:362:12:451:-34.6144,0,-26.6214 0/1:14:4,10:4:164:10:379:-30.2448,0,-10.9355 0/1:33:5,28:5:193:28:1089:-88.3736,0,-7.80443 dDocent_Contig_5538 18 . C T 4024.48 . AB=0.0656934;ABP=227.464;AC=0;AF=0;AN=6;AO=9;CIGAR=1X1M1X2M1X;DP=237;DPB=237;DPRA=0;EPP=22.5536;EPPR=68.1545;GTI=0;LEN=1;MEANALT=5.5;MQM=60;MQMR=60;NS=3;NUMALT=4;ODDS=5.55112e-17;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=351;QR=1160;RO=30;RPL=0;RPP=22.5536;RPPR=68.1545;RPR=9;RUN=1;SAF=9;SAP=22.5536;SAR=0;SRF=30;SRP=68.1545;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|0:100:9,0,29,20,40:9:351:0,29,20,40:0,1159,801,1596:-195.348,-198.057,-226.904,-102.594,-131.441,-122.711,-132.068,-160.915,-65.451,-154.894,-66.6179,-95.4642,0,-29.4743,-83.423 0|0:45:6,6,14,5,13:6:238:6,14,5,13:235,553,202,522:-67.1269,-49.6103,-67.3968,-23.4266,-23.6969,-38.8053,-52.278,-52.548,-26.3641,-70.3658,-25.9155,-26.1858,0,-28.8532,-41.5958 0|0:92:15,3,14,12,46:15:571:3,14,12,46:116,568,457,1821:-145.378,-140.366,-186.288,-103.048,-140.346,-145.659,-112.42,-149.717,-112.399,-155.632,-0.0266828,-37.3227,0,-9.37679,-33.0027 dDocent_Contig_5539 10 . G A 238.116 . AB=0.111111;ABP=369.507;AC=3;AF=0.5;AN=6;AO=31;CIGAR=1X;DP=279;DPB=279;DPRA=0;EPP=70.3259;EPPR=541.535;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=59.875;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=1223;QR=9845;RO=248;RPL=0;RPP=70.3259;RPPR=541.535;RPR=31;RUN=1;SAF=31;SAP=70.3259;SAR=0;SRF=248;SRP=541.535;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:105:96,9:96:3819:9:354:-0.609947,0,-312.107 0/1:93:78,15:78:3090:15:592:-25.618,0,-250.158 0/1:81:74,7:74:2936:7:277:-0.915781,0,-239.953 dDocent_Contig_5541 22 . C T 712.747 . AB=0.315217;ABP=30.2953;AC=3;AF=0.5;AN=6;AO=29;CIGAR=1X;DP=92;DPB=92;DPRA=0;EPP=65.983;EPPR=139.813;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=1149;QR=2553;RO=63;RPL=0;RPP=65.983;RPPR=139.813;RPR=29;RUN=1;SAF=29;SAP=65.983;SAR=0;SRF=63;SRP=139.813;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:49:27,22:27:1089:22:865:-63.4026,0,-83.5452 0/1:27:23,4:23:934:4:162:-6.83894,0,-76.2328 0/1:16:13,3:13:530:3:122:-6.55601,0,-43.2301 dDocent_Contig_5542 11 . T C 427.335 . AB=0.145631;ABP=227.705;AC=3;AF=0.5;AN=6;AO=30;CIGAR=1X;DP=206;DPB=206;DPRA=0;EPP=68.1545;EPPR=385.189;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=1.38778e-17;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=1213;QR=6816;RO=176;RPL=0;RPP=68.1545;RPPR=385.189;RPR=30;RUN=1;SAF=30;SAP=68.1545;SAR=0;SRF=176;SRP=385.189;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:108:88,20:88:3448:20:806:-40.3458,0,-277.896 0/1:52:47,5:47:1799:5:203:-2.9995,0,-146.495 0/1:46:41,5:41:1569:5:204:-4.89665,0,-127.614 dDocent_Contig_5543 20 . G C 155.583 . AB=0.269231;ABP=15.0369;AC=1;AF=0.166667;AN=6;AO=7;CIGAR=1X;DP=195;DPB=195;DPRA=0.307692;EPP=18.2106;EPPR=411.247;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=276;QR=7457;RO=188;RPL=0;RPP=18.2106;RPPR=411.247;RPR=7;RUN=1;SAF=7;SAP=18.2106;SAR=0;SRF=188;SRP=411.247;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:97:97,0:97:3844:0:0:0,-29.1999,-345.967 0/1:26:19,7:19:748:7:276:-17.3822,0,-59.8131 0/0:72:72,0:72:2865:0:0:0,-21.6742,-257.959 dDocent_Contig_5544 9 . T C 122.897 . AB=0.141176;ABP=98.0697;AC=2;AF=0.333333;AN=6;AO=13;CIGAR=1X;DP=164;DPB=164;DPRA=0;EPP=31.2394;EPPR=330.903;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=477;QR=5816;RO=151;RPL=0;RPP=31.2394;RPPR=330.903;RPR=13;RUN=1;SAF=13;SAP=31.2394;SAR=0;SRF=151;SRP=330.903;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:79:78,1:78:2996:1:25:0,-21.2815,-267.305 0/1:29:23,6:23:890:6:218:-11.2388,0,-71.6893 0/1:56:50,6:50:1930:6:234:-4.57342,0,-157.084 dDocent_Contig_5545 15 . C T 147.546 . AB=0.134328;ABP=80.8268;AC=1;AF=0.166667;AN=6;AO=9;CIGAR=1X1M1X5M;DP=67;DPB=63;DPRA=0;EPP=22.5536;EPPR=107.241;GTI=0;LEN=1;MEANALT=2;MQM=60;MQMR=60;NS=3;NUMALT=3;ODDS=6.93889e-18;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=356;QR=1910;RO=48;RPL=0;RPP=22.5536;RPPR=107.241;RPR=9;RUN=1;SAF=9;SAP=22.5536;SAR=0;SRF=48;SRP=107.241;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|0:33:26,3,4,0:26:1033:3,4,0:116,154,0:-4.81694,-3.11541,-87.2696,0,-75.5296,-83.852,-12.6437,-88.1726,-85.0561,-97.6994 0|1:18:13,3,0,2:13:518:3,0,2:118,0,73:-5.81024,0,-41.7826,-9.72363,-42.6857,-52.3922,-3.7725,-36.7277,-46.4334,-45.8314 0|0:16:9,3,4,0:9:359:3,4,0:122,151,0:-9.64921,-2.28282,-30.9608,0,-19.4954,-28.3564,-12.3585,-31.8639,-29.5606,-41.9298 dDocent_Contig_5546 65 . C T 4545.44 . AB=0.878788;ABP=208.642;AC=4;AF=0.666667;AN=6;AO=170;CIGAR=1X;DP=192;DPB=192;DPRA=0;EPP=372.161;EPPR=48.6112;GTI=0;LEN=1;MEANALT=1.33333;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=5715;QR=822;RO=21;RPL=170;RPP=372.161;RPPR=48.6112;RPR=0;RUN=1;SAF=170;SAP=372.161;SAR=0;SRF=21;SRP=48.6112;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:120:11,108:11:419:108:3627:-290.711,0,-2.1213 1/1:27:2,25:2:81:25:831:-67.3922,-0.442076,0 0/1:45:8,37:8:322:37:1257:-99.8663,0,-15.8022 dDocent_Contig_5547 20 . T C 7622.98 . AB=0.844765;ABP=288.994;AC=3;AF=0.5;AN=6;AO=234;CIGAR=1X;DP=277;DPB=277;DPRA=0;EPP=511.135;EPPR=96.3836;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=0.987179;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=9456;QR=1720;RO=43;RPL=0;RPP=511.135;RPPR=96.3836;RPR=234;RUN=1;SAF=234;SAP=511.135;SAR=0;SRF=43;SRP=96.3836;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:150:19,131:19:759:131:5314:-432.917,0,-23.476 0/1:42:5,37:5:195:37:1484:-121.16,0,-5.27899 0/1:85:19,66:19:766:66:2658:-213.744,0,-43.6711 dDocent_Contig_5548 60 . G A 329.958 . AB=0.170213;ABP=136.209;AC=3;AF=0.5;AN=6;AO=24;CIGAR=1X;DP=141;DPB=141;DPRA=0;EPP=55.1256;EPPR=257.073;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=6.93889e-18;PAIRED=1;PAIREDR=0.974359;PAO=0;PQA=0;PQR=0;PRO=0;QA=888;QR=4434;RO=117;RPL=24;RPP=55.1256;RPPR=257.073;RPR=0;RUN=1;SAF=24;SAP=55.1256;SAR=0;SRF=117;SRP=257.073;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:70:59,11:59:2266:11:424:-17.4417,0,-183.084 0/1:44:38,6:38:1435:6:229:-7.73018,0,-116.179 0/1:27:20,7:20:733:7:235:-13.3468,0,-58.1718 dDocent_Contig_5549 8 . A G 1372.41 . AB=0.382353;ABP=19.3602;AC=2;AF=0.333333;AN=6;AO=53;CIGAR=1X;DP=181;DPB=181;DPRA=0;EPP=118.098;EPPR=280.959;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=2051;QR=4582;RO=128;RPL=0;RPP=118.098;RPPR=280.959;RPR=53;RUN=1;SAF=53;SAP=118.098;SAR=0;SRF=128;SRP=280.959;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:107:59,48:59:2097:48:1856:-135.077,0,-156.773 0/1:29:25,4:25:876:4:156:-5.68742,0,-70.4214 0/0:45:44,1:44:1609:1:39:0,-9.64978,-141.192 dDocent_Contig_5550 9 . A T 1044.38 . AB=0.205128;ABP=209.189;AC=3;AF=0.5;AN=6;AO=56;CIGAR=1X;DP=273;DPB=273;DPRA=0;EPP=124.613;EPPR=469.877;GTI=0;LEN=1;MEANALT=1.66667;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=2123;QR=8187;RO=215;RPL=0;RPP=124.613;RPPR=469.877;RPR=56;RUN=1;SAF=56;SAP=124.613;SAR=0;SRF=215;SRP=469.877;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:135:109,25:109:4146:25:957:-45.7171,0,-332.495 0/1:70:54,15:54:2042:15:563:-30.1086,0,-163.133 0/1:68:52,16:52:1999:16:603:-34.1353,0,-159.679 dDocent_Contig_5551 49 . T C 166.537 . AB=0.115646;ABP=191.633;AC=1;AF=0.166667;AN=6;AO=22;CIGAR=1X;DP=264;DPB=264;DPRA=0;EPP=50.7827;EPPR=398.721;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=875;QR=9604;RO=242;RPL=0;RPP=50.7827;RPPR=398.721;RPR=22;RUN=1;SAF=22;SAP=50.7827;SAR=0;SRF=242;SRP=528.507;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:147:130,17:130:5110:17:690:-18.1766,0,-415.508 0/0:38:36,2:36:1449:2:77:0,-4.13031,-123.349 0/0:79:76,3:76:3045:3:108:0,-13.7117,-264.065 dDocent_Contig_5552 30 . C T 1016.41 . AB=0.0677966;ABP=194.468;AC=0;AF=0;AN=6;AO=8;CIGAR=1X3M1X;DP=138;DPB=138;DPRA=0;EPP=20.3821;EPPR=119.765;GTI=0;LEN=1;MEANALT=3;MQM=60;MQMR=60;NS=3;NUMALT=2;ODDS=0;PAIRED=1;PAIREDR=0.674419;PAO=0;PQA=0;PQR=0;PRO=0;QA=289;QR=3351;RO=86;RPL=0;RPP=20.3821;RPPR=189.757;RPR=8;RUN=1;SAF=8;SAP=20.3821;SAR=0;SRF=77;SRP=119.765;SRR=9;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|0:55:39,2,13:39:1525:2,13:78,511:-30.374,-35.7,-160.487,0,-119.059,-121.558 0|0:63:37,6,19:37:1447:6,19:211,704:-46.4506,-40.419,-157.595,0,-101.828,-113.277 0|0:20:10,0,10:10:379:0,10:0,400:-30.3391,-33.3494,-64.4104,0,-31.4501,-28.4398 dDocent_Contig_5553 70 . C T 4681.31 . AB=0.871658;ABP=227.369;AC=3;AF=0.5;AN=6;AO=163;CIGAR=1X;DP=187;DPB=187;DPRA=0;EPP=356.96;EPPR=55.1256;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=1.38778e-17;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=5880;QR=907;RO=24;RPL=163;RPP=356.96;RPPR=55.1256;RPR=0;RUN=1;SAF=163;SAP=356.96;SAR=0;SRF=24;SRP=55.1256;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:105:11,94:11:425:94:3411:-275.536,0,-6.99605 0/1:30:4,26:4:157:26:986:-80.0164,0,-5.47701 0/1:52:9,43:9:325:43:1483:-118.101,0,-13.942 dDocent_Contig_5554 9 . C T 23637.8 . AB=0.739906;ABP=535.421;AC=3;AF=0.5;AN=6;AO=788;CIGAR=1X;DP=1065;DPB=1065;DPRA=0;EPP=1714.13;EPPR=604.508;GTI=0;LEN=1;MEANALT=1;MQM=58.5457;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=0.989848;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=29945;QR=10687;RO=277;RPL=0;RPP=1714.13;RPPR=604.508;RPR=788;RUN=1;SAF=788;SAP=1714.13;SAR=0;SRF=277;SRP=604.508;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:390:71,319:71:2744:319:12079:-967.927,0,-129.738 0/1:290:94,196:94:3625:196:7466:-583.989,0,-239.068 0/1:385:112,273:112:4318:273:10400:-817.385,0,-272.786 dDocent_Contig_5555 7 . T A 27018.1 . AB=0;ABP=0;AC=6;AF=1;AN=6;AO=819;CIGAR=1X;DP=848;DPB=848;DPRA=0;EPP=1781.45;EPPR=63.8115;GTI=0;LEN=1;MEANALT=1.33333;MQM=59.3883;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=0.990232;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=31173;QR=1028;RO=28;RPL=0;RPP=1781.45;RPPR=63.8115;RPR=819;RUN=1;SAF=819;SAP=1781.45;SAR=0;SRF=28;SRP=63.8115;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 1/1:450:15,435:15:536:435:16639:-1443.3,-86.899,0 1/1:173:6,167:6:230:167:6259:-537.775,-31.0114,0 1/1:225:7,217:7:262:217:8275:-720.26,-43.6277,0 dDocent_Contig_5556 59 . C A 151.375 . AB=0.18;ABP=47.4821;AC=2;AF=0.333333;AN=6;AO=13;CIGAR=1X;DP=108;DPB=108;DPRA=0;EPP=31.2394;EPPR=209.3;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=529;QR=3756;RO=95;RPL=13;RPP=31.2394;RPPR=209.3;RPR=0;RUN=1;SAF=13;SAP=31.2394;SAR=0;SRF=95;SRP=209.3;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:58:54,4:54:2154:4:163:0,-2.40131,-178.975 0/1:15:10,5:10:370:5:203:-14.1376,0,-29.1155 0/1:35:31,4:31:1232:4:163:-4.52238,0,-100.613 dDocent_Contig_5557 29 . G A 4558.9 . AB=0.685841;ABP=70.8064;AC=3;AF=0.5;AN=6;AO=155;CIGAR=1X;DP=226;DPB=226;DPRA=0;EPP=339.589;EPPR=157.185;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=5875;QR=2701;RO=71;RPL=0;RPP=339.589;RPPR=157.185;RPR=155;RUN=1;SAF=155;SAP=339.589;SAR=0;SRF=71;SRP=157.185;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:109:27,82:27:1034:82:3120:-248.132,0,-60.5392 0/1:31:16,15:16:633:15:566:-41.946,0,-47.975 0/1:86:28,58:28:1034:58:2189:-171.336,0,-67.4554 dDocent_Contig_5558 67 . T C 184.408 . AB=0.264706;ABP=19.3602;AC=1;AF=0.166667;AN=6;AO=9;CIGAR=1X;DP=158;DPB=158;DPRA=0.548387;EPP=22.5536;EPPR=326.56;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=335;QR=5886;RO=149;RPL=9;RPP=22.5536;RPPR=326.56;RPR=0;RUN=1;SAF=9;SAP=22.5536;SAR=0;SRF=149;SRP=326.56;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:109:109,0:109:4350:0:0:0,-32.8123,-391.459 0/0:15:15,0:15:578:0:0:0,-4.51545,-52.3486 0/1:34:25,9:25:958:9:335:-20.2648,0,-76.297 dDocent_Contig_5559 22 . C T 1805.21 . AB=0.264264;ABP=163.745;AC=3;AF=0.5;AN=6;AO=88;CIGAR=1X;DP=333;DPB=333;DPRA=0;EPP=194.1;EPPR=535.021;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=3171;QR=9751;RO=245;RPL=0;RPP=194.1;RPPR=535.021;RPR=88;RUN=1;SAF=88;SAP=194.1;SAR=0;SRF=245;SRP=535.021;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:156:115,41:115:4613:41:1460:-84.7105,0,-368.119 0/1:82:64,18:64:2561:18:670:-35.9422,0,-205.946 0/1:95:66,29:66:2577:29:1041:-65.3916,0,-203.458 dDocent_Contig_5560 9 . T C 1428.34 . AB=0.45;ABP=5.61607;AC=3;AF=0.5;AN=6;AO=54;CIGAR=1X;DP=120;DPB=120;DPRA=0;EPP=120.27;EPPR=146.327;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=0.969697;PAO=0;PQA=0;PQR=0;PRO=0;QA=2039;QR=2525;RO=66;RPL=0;RPP=120.27;RPPR=146.327;RPR=54;RUN=1;SAF=54;SAP=120.27;SAR=0;SRF=66;SRP=146.327;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:67:33,34:33:1268:34:1290:-96.2187,0,-94.2428 0/1:21:14,7:14:531:7:244:-15.9715,0,-41.8119 0/1:32:19,13:19:726:13:505:-36.1662,0,-56.0379 dDocent_Contig_5561 42 . G A 82.2569 . AB=0.135135;ABP=88.5781;AC=2;AF=0.333333;AN=6;AO=14;CIGAR=1X;DP=133;DPB=133;DPRA=0;EPP=33.4109;EPPR=261.416;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=513;QR=4746;RO=119;RPL=0;RPP=33.4109;RPPR=261.416;RPR=14;RUN=1;SAF=14;SAP=33.4109;SAR=0;SRF=119;SRP=261.416;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:45:38,7:38:1514:7:252:-9.48185,0,-122.96 0/1:29:26,3:26:1043:3:117:-2.18034,0,-85.4299 0/0:59:55,4:55:2189:4:144:0,-4.4489,-183.869 dDocent_Contig_5562 107 . N T 101.68 . AB=0;ABP=0;AC=2;AF=1;AN=2;AO=3;CIGAR=1X;DP=3;DPB=3;DPRA=0;EPP=9.52472;EPPR=0;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=0;NS=1;NUMALT=1;ODDS=6.68461;PAIRED=1;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=109;QR=0;RO=0;RPL=0;RPP=9.52472;RPPR=0;RPR=3;RUN=1;SAF=0;SAP=9.52472;SAR=3;SRF=0;SRP=0;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL ./.:.:.:.:.:.:.:. ./.:.:.:.:.:.:.:. 1/1:3:0,3:0:0:3:109:-10.1675,-0.90309,0 dDocent_Contig_5563 16 . T C 675.13 . AB=0.156584;ABP=290.858;AC=3;AF=0.5;AN=6;AO=44;CIGAR=1X;DP=281;DPB=281;DPRA=0;EPP=98.5551;EPPR=517.649;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=59.7426;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=1740;QR=9394;RO=237;RPL=0;RPP=98.5551;RPPR=517.649;RPR=44;RUN=1;SAF=44;SAP=98.5551;SAR=0;SRF=237;SRP=517.649;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:105:94,11:94:3766:11:449:-9.15773,0,-307.338 0/1:115:88,27:88:3491:27:1048:-59.9909,0,-277.664 0/1:61:55,6:55:2137:6:243:-3.88535,0,-174.141 dDocent_Contig_5564 15 . A G 265 . AB=0.172414;ABP=84.1036;AC=1;AF=0.166667;AN=6;AO=16;CIGAR=1X2M15D1M;DP=140;DPB=127.368;DPRA=4.88462;EPP=37.7539;EPPR=254.901;GTI=0;LEN=1;MEANALT=3.5;MQM=60;MQMR=60;NS=3;NUMALT=2;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=629;QR=4510;RO=116;RPL=0;RPP=37.7539;RPPR=254.901;RPR=16;RUN=1;SAF=16;SAP=37.7539;SAR=0;SRF=116;SRP=254.901;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|1:87:69,15,1:69:2675:15,1:593,39:-28.0217,0,-215.225,-45.5873,-216.534,-265.034 0|0:40:35,1,3:35:1375:1,3:36,99:0,-7.59513,-120.435,-2.55755,-112.739,-114.772 0|0:13:12,0,1:12:460:0,1:0,38:0,-3.61236,-41.3661,-0.116121,-38.2498,-37.9488 dDocent_Contig_5569 10 . G T 38.2915 . AB=0.157895;ABP=22.325;AC=1;AF=0.166667;AN=6;AO=4;CIGAR=1X;DP=56;DPB=56;DPRA=0.973684;EPP=11.6962;EPPR=115.927;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=0;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=163;QR=2050;RO=52;RPL=0;RPP=11.6962;RPPR=115.927;RPR=4;RUN=1;SAF=4;SAP=11.6962;SAR=0;SRF=52;SRP=115.927;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:19:19,0:19:736:0:0:0,-5.71957,-66.5564 0/0:18:17,1:17:670:1:41:0,-1.32397,-56.5356 0/1:19:16,3:16:644:3:122:-5.65292,0,-52.5751 dDocent_Contig_5570 1 . N G 113.745 . AB=0;ABP=0;AC=4;AF=1;AN=4;AO=3;CIGAR=1X;DP=3;DPB=3;DPRA=0;EPP=9.52472;EPPR=0;GTI=0;LEN=1;MEANALT=1;MQM=48;MQMR=0;NS=2;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=116;QR=0;RO=0;RPL=0;RPP=9.52472;RPPR=0;RPR=3;RUN=1;SAF=3;SAP=9.52472;SAR=0;SRF=0;SRP=0;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 1/1:1:0,1:0:0:1:41:-4.021,-0.30103,0 ./.:.:.:.:.:.:.:. 1/1:2:0,2:0:0:2:75:-7.05085,-0.60206,0 dDocent_Contig_5571 49 . T C 234.973 . AB=0.175676;ABP=70.6194;AC=1;AF=0.166667;AN=6;AO=18;CIGAR=1X;DP=214;DPB=214;DPRA=0;EPP=42.0968;EPPR=419.977;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=715;QR=7826;RO=196;RPL=0;RPP=42.0968;RPPR=419.977;RPR=18;RUN=1;SAF=18;SAP=42.0968;SAR=0;SRF=196;SRP=428.619;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:110:107,3:107:4308:3:109:0,-22.9503,-377.492 0/0:30:28,2:28:1110:2:81:0,-1.34517,-92.4982 0/1:74:61,13:61:2408:13:525:-25.3212,0,-194.59 dDocent_Contig_5572 209 . N G 77.8076 . AB=0;ABP=0;AC=2;AF=1;AN=2;AO=2;CIGAR=1X;DP=2;DPB=2;DPRA=0;EPP=7.35324;EPPR=0;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=0;NS=1;NUMALT=1;ODDS=5.99146;PAIRED=1;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=82;QR=0;RO=0;RPL=2;RPP=7.35324;RPPR=0;RPR=0;RUN=1;SAF=0;SAP=7.35324;SAR=2;SRF=0;SRP=0;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 1/1:2:0,2:0:0:2:82:-7.77968,-0.60206,0 ./.:.:.:.:.:.:.:. ./.:.:.:.:.:.:.:. dDocent_Contig_5573 9 . T G 4834.29 . AB=0.634615;ABP=43.9342;AC=3;AF=0.5;AN=6;AO=165;CIGAR=1X;DP=260;DPB=260;DPRA=0;EPP=361.303;EPPR=209.3;GTI=0;LEN=1;MEANALT=1;MQM=54.0727;MQMR=60;NS=3;NUMALT=1;ODDS=1.38778e-17;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=6323;QR=3653;RO=95;RPL=0;RPP=361.303;RPPR=209.3;RPR=165;RUN=1;SAF=165;SAP=361.303;SAR=0;SRF=95;SRP=209.3;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:131:41,90:41:1579:90:3435:-268.024,0,-102.943 0/1:58:24,34:24:926:34:1298:-99.3363,0,-66.1974 0/1:71:30,41:30:1148:41:1590:-121.591,0,-82.2471 dDocent_Contig_5574 129 . T G 179.464 . AB=0.533333;ABP=3.15506;AC=1;AF=0.166667;AN=6;AO=8;CIGAR=1X;DP=45;DPB=45;DPRA=1;EPP=20.3821;EPPR=83.3548;GTI=0;LEN=1;MEANALT=1;MQM=39.25;MQMR=57.6757;NS=3;NUMALT=1;ODDS=8.67362e-19;PAIRED=0;PAIREDR=0.864865;PAO=0;PQA=0;PQR=0;PRO=0;QA=288;QR=1283;RO=37;RPL=0;RPP=20.3821;RPPR=83.3548;RPR=8;RUN=1;SAF=0;SAP=20.3821;SAR=8;SRF=0;SRP=83.3548;SRR=37;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:19:19,0:19:642:0:0:0,-5.71957,-57.6677 0/0:11:11,0:11:388:0:0:0,-3.31133,-35.2565 0/1:15:7,8:7:253:8:288:-19.7703,0,-18.604 dDocent_Contig_5575 18 . A C 90.673 . AB=0.307692;ABP=7.18621;AC=1;AF=0.166667;AN=6;AO=4;CIGAR=1X;DP=25;DPB=25;DPRA=2.16667;EPP=11.6962;EPPR=46.4397;GTI=0;LEN=1;MEANALT=2;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=1.73472e-18;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=160;QR=806;RO=20;RPL=0;RPP=11.6962;RPPR=46.4397;RPR=4;RUN=1;SAF=4;SAP=11.6962;SAR=0;SRF=20;SRP=46.4397;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:6:6,0:6:242:0:0:0,-1.80618,-22.1573 0/1:13:8,4:8:324:4:160:-10.8912,0,-25.6497 0/0:6:6,0:6:240:0:0:0,-1.80618,-21.9757 dDocent_Contig_5577 86 . C T 31.8324 . AB=0.119403;ABP=87.3088;AC=1;AF=0.166667;AN=6;AO=8;CIGAR=1X;DP=281;DPB=281;DPRA=0.626168;EPP=20.3821;EPPR=595.822;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=276;QR=9521;RO=273;RPL=8;RPP=20.3821;RPPR=595.822;RPR=0;RUN=1;SAF=8;SAP=20.3821;SAR=0;SRF=273;SRP=595.822;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:159:159,0:159:5567:0:0:0,-47.8638,-501.161 0/0:55:55,0:55:1937:0:0:0,-16.5566,-174.609 0/1:67:59,8:59:2017:8:276:-5.00687,0,-161.635 dDocent_Contig_5579 85 . A G 197.146 . AB=0.166667;ABP=130.403;AC=3;AF=0.5;AN=6;AO=22;CIGAR=1X3M1X;DP=132;DPB=132;DPRA=0;EPP=50.7827;EPPR=239.701;GTI=0;LEN=1;MEANALT=1.33333;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=6.93889e-18;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=712;QR=3701;RO=109;RPL=22;RPP=50.7827;RPPR=239.701;RPR=0;RUN=1;SAF=22;SAP=50.7827;SAR=0;SRF=109;SRP=239.701;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|1:72:60,11:60:2030:11:366:-11.5406,0,-161.253 0|1:14:9,5:9:311:5:151:-9.67379,0,-24.1109 0|1:46:40,6:40:1360:6:195:-4.02174,0,-108.852 dDocent_Contig_5580 10 . G A 2563.61 . AB=0.100671;ABP=209.388;AC=0;AF=0;AN=6;AO=15;CIGAR=1X2M1X;DP=149;DPB=149;DPRA=0;EPP=35.5824;EPPR=100.727;GTI=0;LEN=1;MEANALT=2.66667;MQM=60;MQMR=60;NS=3;NUMALT=3;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=589;QR=1784;RO=45;RPL=0;RPP=35.5824;RPPR=100.727;RPR=15;RUN=1;SAF=15;SAP=35.5824;SAR=0;SRF=45;SRP=100.727;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|0:72:23,2,6,41:23:905:2,6,41:80,240,1638:-127.987,-128.32,-202.158,-115.141,-182.99,-187.774,0,-67.8467,-54.6661,-62.0949 0|0:27:10,0,2,15:10:400:0,2,15:0,80,596:-46.0522,-49.0625,-82.0126,-42.472,-75.4223,-74.8202,0,-32.9492,-26.359,-28.4337 0|0:50:12,3,7,28:12:479:3,7,28:119,269,1111:-87.8445,-81.6606,-120.209,-69.3777,-99.0327,-106.722,0,-29.6599,-17.3795,-31.0275 dDocent_Contig_5581 18 . T C 101.418 . 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AB=0.514286;ABP=3.25847;AC=3;AF=0.5;AN=6;AO=72;CIGAR=1X;DP=140;DPB=140;DPRA=0;EPP=159.356;EPPR=150.67;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=2797;QR=2676;RO=68;RPL=0;RPP=159.356;RPPR=150.67;RPR=72;RUN=1;SAF=72;SAP=159.356;SAR=0;SRF=68;SRP=150.67;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:82:36,46:36:1438:46:1808:-138.254,0,-104.983 0/1:16:9,7:9:344:7:275:-20.2996,0,-26.4964 0/1:42:23,19:23:894:19:714:-51.923,0,-68.1173 dDocent_Contig_5583 66 . T G 166.978 . 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C A 2796.06 . AB=0.560694;ABP=8.54567;AC=3;AF=0.5;AN=6;AO=97;CIGAR=1X;DP=173;DPB=173;DPRA=0;EPP=213.643;EPPR=168.042;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=3737;QR=2912;RO=76;RPL=0;RPP=213.643;RPPR=168.042;RPR=97;RUN=1;SAF=97;SAP=213.643;SAR=0;SRF=76;SRP=168.042;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:105:48,57:48:1841:57:2201:-166.703,0,-134.329 0/1:32:17,15:17:648:15:573:-42.2784,0,-49.0216 0/1:36:11,25:11:423:25:963:-76.1474,0,-27.5861 dDocent_Contig_5598 36 . T G 44.7768 . AB=0.2;ABP=14.7363;AC=1;AF=0.166667;AN=6;AO=3;CIGAR=1X;DP=44;DPB=44;DPRA=1.03448;EPP=9.52472;EPPR=92.0407;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=0;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=116;QR=1619;RO=41;RPL=0;RPP=9.52472;RPPR=92.0407;RPR=3;RUN=1;SAF=3;SAP=9.52472;SAR=0;SRF=41;SRP=92.0407;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:20:20,0:20:786:0:0:0,-6.0206,-71.0484 0/1:15:12,3:12:479:3:116:-6.30157,0,-38.9461 0/0:9:9,0:9:354:0:0:0,-2.70927,-32.2203 dDocent_Contig_5599 8 . A T 360.003 . AB=0.257576;ABP=36.701;AC=3;AF=0.5;AN=6;AO=17;CIGAR=1X3M1X;DP=66;DPB=66;DPRA=0;EPP=39.9253;EPPR=105.07;GTI=0;LEN=1;MEANALT=1.66667;MQM=59.7059;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=0;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=667;QR=1823;RO=47;RPL=0;RPP=39.9253;RPPR=105.07;RPR=17;RUN=1;SAF=17;SAP=39.9253;SAR=0;SRF=47;SRP=105.07;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|1:29:23,4:23:883:4:160:-6.25664,0,-71.2566 0|1:16:14,2:14:550:2:77:-2.49266,0,-45.0287 0|1:21:10,11:10:390:11:430:-32.7296,0,-29.1354 dDocent_Contig_5600 203 . A C 7586.34 . AB=0.792285;ABP=253.078;AC=3;AF=0.5;AN=6;AO=267;CIGAR=1X;DP=337;DPB=337;DPRA=0;EPP=582.793;EPPR=155.013;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=9611;QR=2193;RO=70;RPL=267;RPP=582.793;RPPR=155.013;RPR=0;RUN=1;SAF=0;SAP=582.793;SAR=267;SRF=0;SRP=155.013;SRR=70;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:172:42,130:42:1348:130:4667:-368.388,0,-69.8242 0/1:75:12,63:12:318:63:2293:-184.045,0,-6.3008 0/1:90:16,74:16:527:74:2651:-211.724,0,-20.6495 dDocent_Contig_5601 22 . C T 214.251 . AB=0.229167;ABP=33.5919;AC=1;AF=0.166667;AN=6;AO=22;CIGAR=1X3M1X;DP=277;DPB=277;DPRA=0;EPP=50.7827;EPPR=545.878;GTI=0;LEN=1;MEANALT=1.66667;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=0.992;PAO=0;PQA=0;PQR=0;PRO=0;QA=823;QR=9456;RO=250;RPL=0;RPP=50.7827;RPPR=545.878;RPR=22;RUN=1;SAF=22;SAP=50.7827;SAR=0;SRF=250;SRP=545.878;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|0:144:134,5:134:5091:5:184:0,-25.2875,-441.296 0|1:48:37,11:37:1377:11:415:-23.249,0,-109.769 0|0:85:79,6:79:2988:6:224:0,-5.07028,-248.566 dDocent_Contig_5602 22 . G T 2464.72 . AB=0.540373;ABP=5.28967;AC=3;AF=0.5;AN=6;AO=87;CIGAR=1X;DP=161;DPB=161;DPRA=0;EPP=191.928;EPPR=163.699;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=3329;QR=2877;RO=74;RPL=0;RPP=191.928;RPPR=163.699;RPR=87;RUN=1;SAF=87;SAP=191.928;SAR=0;SRF=74;SRP=163.699;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:84:40,44:40:1542:44:1725:-130.198,0,-113.73 0/1:34:14,20:14:542:20:764:-58.8467,0,-38.883 0/1:43:20,23:20:793:23:840:-62.9507,0,-58.7326 dDocent_Contig_5603 23 . A T 546.982 . AB=0.133333;ABP=20.5268;AC=0;AF=0;AN=6;AO=2;CIGAR=1M1X3M1X;DP=82;DPB=83;DPRA=0;EPP=7.35324;EPPR=89.8692;GTI=0;LEN=1;MEANALT=3;MQM=60;MQMR=60;NS=3;NUMALT=4;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=77;QR=1576;RO=40;RPL=0;RPP=7.35324;RPPR=89.8692;RPR=2;RUN=1;SAF=2;SAP=7.35324;SAR=0;SRF=40;SRP=89.8692;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|0:45:16,0,0,13,16:16:620:0,0,13,16:0,0,523,642:-48.08,-52.8964,-103.823,-52.8964,-103.823,-103.823,-9.79369,-60.7184,-60.7184,-56.8051,0,-50.9235,-50.9235,-7.8146,-46.107 0|0:15:9,2,0,2,2:9:350:2,0,2,2:77,0,82,80:-4.06467,-0.458454,-28.6046,-6.77394,-29.2067,-35.5276,0,-22.4356,-28.7568,-28.1547,-0.182943,-22.6154,-28.9363,-22.1648,-28.3342 0|0:22:15,0,2,1,4:15:606:0,2,1,4:0,74,38,152:-7.9501,-12.4655,-62.4438,-6.41443,-56.3924,-55.7903,-9.34855,-59.328,-53.2768,-59.0269,0,-49.9854,-43.935,-46.87,-48.7812 dDocent_Contig_5605 19 . G A 537.461 . 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C G 36.2093 . AB=0.121212;ABP=85.263;AC=2;AF=0.333333;AN=6;AO=10;CIGAR=1X;DP=110;DPB=110;DPRA=0;EPP=24.725;EPPR=217.986;GTI=0;LEN=1;MEANALT=1.33333;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=6.93889e-18;PAIRED=1;PAIREDR=0.989899;PAO=0;PQA=0;PQR=0;PRO=0;QA=356;QR=3704;RO=99;RPL=10;RPP=24.725;RPPR=217.986;RPR=0;RUN=1;SAF=10;SAP=24.725;SAR=0;SRF=99;SRP=217.986;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:39:35,4:35:1296:4:158:-2.8601,0,-105.165 0/1:27:23,4:23:868:4:134:-4.26332,0,-70.308 0/0:44:41,2:41:1540:2:64:0,-7.02561,-132.867 dDocent_Contig_5608 36 . G T 255.185 . AB=0.06;ABP=171.169;AC=0;AF=0;AN=6;AO=8;CIGAR=1X2M2I4M3D3M1X;DP=260;DPB=259.429;DPRA=0;EPP=20.3821;EPPR=272.325;GTI=0;LEN=1;MEANALT=5.33333;MQM=60;MQMR=60;NS=3;NUMALT=2;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=304;QR=8068;RO=209;RPL=0;RPP=20.3821;RPPR=272.325;RPR=8;RUN=1;SAF=8;SAP=20.3821;SAR=0;SRF=209;SRP=456.848;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|0:100:71,6,17:71:2772:6,17:226,595:-27.0414,-29.8871,-255.997,0,-209.403,-222.804 0|0:87:72,1,7:72:2781:1,7:38,225:0,-18.5545,-246.701,-3.55484,-228.875,-229.884 0|0:73:66,1,0:66:2515:1,0:40,0:0,-16.5741,-222.533,-19.868,-222.834,-226.129 dDocent_Contig_5610 70 . G A 35.4987 . AB=0.2;ABP=14.7363;AC=1;AF=0.166667;AN=6;AO=7;CIGAR=1X;DP=86;DPB=86;DPRA=0;EPP=18.2106;EPPR=174.557;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=248;QR=2671;RO=79;RPL=7;RPP=18.2106;RPPR=174.557;RPR=0;RUN=1;SAF=7;SAP=18.2106;SAR=0;SRF=79;SRP=174.557;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:41:39,2:39:1314:2:72:0,-5.50551,-111.714 0/1:15:12,3:12:421:3:106:-5.37365,0,-33.7096 0/0:30:28,2:28:936:2:70:0,-2.3835,-77.8973 dDocent_Contig_5611 7 . T A 508.872 . AB=0.170103;ABP=186.399;AC=3;AF=0.5;AN=6;AO=33;CIGAR=1X;DP=194;DPB=194;DPRA=0;EPP=74.6689;EPPR=352.617;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=1264;QR=6177;RO=161;RPL=0;RPP=74.6689;RPPR=352.617;RPR=33;RUN=1;SAF=33;SAP=74.6689;SAR=0;SRF=161;SRP=352.617;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:96:79,17:79:3026:17:658:-30.6583,0,-243.6 0/1:40:35,5:35:1336:5:187:-5.15053,0,-108.486 0/1:58:47,11:47:1815:11:419:-20.6011,0,-146.14 dDocent_Contig_5613 34 . T C 77.9885 . AB=0.142857;ABP=57.2971;AC=1;AF=0.166667;AN=6;AO=7;CIGAR=1X1M1X;DP=132;DPB=132;DPRA=1.18072;EPP=18.2106;EPPR=270.101;GTI=0;LEN=1;MEANALT=2;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=264;QR=4841;RO=123;RPL=0;RPP=18.2106;RPPR=270.101;RPR=7;RUN=1;SAF=7;SAP=18.2106;SAR=0;SRF=123;SRP=270.101;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|0:65:65,0:65:2563:0:0:0,-19.5669,-230.818 0|0:18:18,0:18:681:0:0:0,-5.41854,-61.6173 0|1:49:40,7:40:1597:7:264:-9.62276,0,-129.483 dDocent_Contig_5614 28 . G A 829.858 . AB=0.461538;ABP=3.84548;AC=3;AF=0.5;AN=6;AO=30;CIGAR=1X;DP=65;DPB=65;DPRA=0;EPP=68.1545;EPPR=79.0118;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=3.46945e-18;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=1189;QR=1417;RO=35;RPL=0;RPP=68.1545;RPPR=79.0118;RPR=30;RUN=1;SAF=30;SAP=68.1545;SAR=0;SRF=35;SRP=79.0118;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:34:21,13:21:849:13:517:-36.6353,0,-66.4865 0/1:16:7,9:7:283:9:361:-28.0376,0,-21.0265 0/1:15:7,8:7:285:8:311:-23.8358,0,-21.509 dDocent_Contig_5615 13 . T C 5840.23 . AB=0.713178;ABP=104.851;AC=3;AF=0.5;AN=6;AO=184;CIGAR=1X;DP=258;DPB=258;DPRA=0;EPP=402.561;EPPR=163.699;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=7409;QR=2982;RO=74;RPL=0;RPP=402.561;RPPR=163.699;RPR=184;RUN=1;SAF=184;SAP=402.561;SAR=0;SRF=74;SRP=163.699;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:123:28,95:28:1137:95:3835:-308.102,0,-65.5813 0/1:43:14,29:14:564:29:1165:-92.1841,0,-38.1574 0/1:92:32,60:32:1281:60:2409:-189.26,0,-87.8625 dDocent_Contig_5616 112 . C T 404.947 . AB=0.0930233;ABP=64.872;AC=2;AF=0.333333;AN=6;AO=5;CIGAR=1X8M;DP=79;DPB=79;DPRA=0;EPP=13.8677;EPPR=113.755;GTI=0;LEN=1;MEANALT=3;MQM=45.2;MQMR=60;NS=3;NUMALT=2;ODDS=0;PAIRED=0.8;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=169;QR=1679;RO=51;RPL=0;RPP=13.8677;RPPR=113.755;RPR=5;RUN=1;SAF=0;SAP=13.8677;SAR=5;SRF=0;SRP=113.755;SRR=51;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|1:43:24,14,4:24:804:14,4:478,156:-31.5593,0,-60.8847,-26.0112,-52.33,-89.9208 0|1:21:15,6,0:15:485:6,0:205,0:-12.4583,0,-37.639,-16.9738,-39.4452,-56.0827 0|0:15:12,0,1:12:390:0,1:0,13:0,-3.61236,-35.1413,-3.08391,-34.5484,-34.2473 dDocent_Contig_5617 16 . A G 210.15 . AB=0.171429;ABP=68.6508;AC=1;AF=0.166667;AN=6;AO=14;CIGAR=1X;DP=193;DPB=193;DPRA=0;EPP=33.4109;EPPR=391.704;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=3.46945e-18;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=530;QR=7175;RO=179;RPL=0;RPP=33.4109;RPPR=391.704;RPR=14;RUN=1;SAF=14;SAP=33.4109;SAR=0;SRF=179;SRP=391.704;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:101:100,1:100:4009:1:10:0,-29.404,-359.785 0/0:22:21,1:21:831:1:36:0,-3.02438,-71.5047 0/1:70:58,12:58:2335:12:484:-22.8389,0,-189.228 dDocent_Contig_5618 14 . T C 8822.58 . AB=0.155116;ABP=316.053;AC=5;AF=0.833334;AN=6;AO=52;CIGAR=1X1M;DP=373;DPB=373;DPRA=0;EPP=115.927;EPPR=115.927;GTI=0;LEN=1;MEANALT=2;MQM=60;MQMR=60;NS=3;NUMALT=2;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=2086;QR=2083;RO=52;RPL=0;RPP=115.927;RPPR=115.927;RPR=52;RUN=1;SAF=52;SAP=115.927;SAR=0;SRF=52;SRP=115.927;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|1:237:43,156,38:43:1721:156,38:6212,1517:-498.533,0,-94.8091,-386.543,-16.8355,-516.873 1|1:66:5,52,9:5:203:52,9:2071,365:-182.374,-13.3577,-14.4467,-153.778,0,-167.812 1|1:70:4,61,5:4:159:61,5:2438,204:-204.874,-5.2767,0,-189.246,-1.52565,-200.831 dDocent_Contig_5619 24 . G A 5593.37 . AB=0.33935;ABP=65.105;AC=3;AF=0.5;AN=6;AO=94;CIGAR=10M1X9M;DP=277;DPB=142.9;DPRA=0;EPP=207.129;EPPR=68.1545;GTI=0;LEN=1;MEANALT=3.33333;MQM=60;MQMR=60;NS=3;NUMALT=2;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=3684;QR=1170;RO=30;RPL=0;RPP=207.129;RPPR=68.1545;RPR=94;RUN=1;SAF=94;SAP=207.129;SAR=0;SRF=30;SRP=68.1545;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|1:133:2,81,49:2:79:81,49:2493,1909:-349.709,-150.442,-132.56,-193.405,0,-185.158 0|1:61:15,26,18:15:580:26,18:809,713:-71.4585,-11.053,-50.8704,-17.2562,0,-59.5067 0|1:83:13,42,27:13:511:42,27:1278,1062:-143.692,-45.32,-74.71,-60.22,0,-94.1454 dDocent_Contig_5621 15 . T A 1859.01 . AB=0.417178;ABP=12.722;AC=3;AF=0.5;AN=6;AO=68;CIGAR=1X;DP=163;DPB=163;DPRA=0;EPP=150.67;EPPR=209.3;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=2662;QR=3737;RO=95;RPL=0;RPP=150.67;RPPR=209.3;RPR=68;RUN=1;SAF=68;SAP=150.67;SAR=0;SRF=95;SRP=209.3;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:86:42,44:42:1671:44:1723:-129.399,0,-124.726 0/1:40:27,13:27:1053:13:509:-34.1125,0,-83.0108 0/1:37:26,11:26:1013:11:430:-27.9119,0,-80.3365 dDocent_Contig_5622 62 . A T 464.007 . AB=0.159794;ABP=198.04;AC=3;AF=0.5;AN=6;AO=31;CIGAR=1X;DP=194;DPB=194;DPRA=0;EPP=70.3259;EPPR=356.96;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=0.98773;PAO=0;PQA=0;PQR=0;PRO=0;QA=1214;QR=6393;RO=163;RPL=31;RPP=70.3259;RPPR=356.96;RPR=0;RUN=1;SAF=31;SAP=70.3259;SAR=0;SRF=163;SRP=356.96;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:85:71,14:71:2835:14:551:-24.345,0,-229.668 0/1:42:32,10:32:1208:10:378:-21.7232,0,-96.3508 0/1:67:60,7:60:2350:7:285:-5.8554,0,-191.506 dDocent_Contig_5623 1 . N G 245.565 . AB=0;ABP=0;AC=6;AF=1;AN=6;AO=8;CIGAR=1X;DP=8;DPB=8;DPRA=0;EPP=20.3821;EPPR=0;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=0;NS=3;NUMALT=1;ODDS=1.69407e-21;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=257;QR=0;RO=0;RPL=0;RPP=20.3821;RPPR=0;RPR=8;RUN=1;SAF=0;SAP=20.3821;SAR=8;SRF=0;SRP=0;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 1/1:4:0,4:0:0:4:130:-12.0213,-1.20412,0 1/1:3:0,3:0:0:3:96:-8.95756,-0.90309,0 1/1:1:0,1:0:0:1:31:-3.09945,-0.30103,0 dDocent_Contig_5624 1 . N G 75.9287 . AB=0;ABP=0;AC=2;AF=1;AN=2;AO=2;CIGAR=1X;DP=2;DPB=2;DPRA=0;EPP=7.35324;EPPR=0;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=0;NS=1;NUMALT=1;ODDS=5.99146;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=80;QR=0;RO=0;RPL=0;RPP=7.35324;RPPR=0;RPR=2;RUN=1;SAF=0;SAP=7.35324;SAR=2;SRF=0;SRP=0;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL ./.:.:.:.:.:.:.:. 1/1:2:0,2:0:0:2:80:-7.59179,-0.60206,0 ./.:.:.:.:.:.:.:. dDocent_Contig_5625 11 . G T 2018.03 . AB=0.702128;ABP=36.3678;AC=3;AF=0.5;AN=6;AO=66;CIGAR=1X;DP=94;DPB=94;DPRA=0;EPP=146.327;EPPR=61.6401;GTI=0;LEN=1;MEANALT=1.33333;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=2609;QR=1077;RO=27;RPL=0;RPP=146.327;RPPR=61.6401;RPR=66;RUN=1;SAF=66;SAP=146.327;SAR=0;SRF=27;SRP=61.6401;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:41:13,27:13:519:27:1089:-85.8462,0,-34.6073 0/1:28:8,20:8:318:20:783:-62.3547,0,-20.5578 0/1:25:6,19:6:240:19:737:-59.1246,0,-14.4488 dDocent_Contig_5626 17 . C G 792.975 . AB=0.254386;ABP=62.7448;AC=3;AF=0.5;AN=6;AO=29;CIGAR=1X4M;DP=114;DPB=114;DPRA=0;EPP=65.983;EPPR=161.528;GTI=0;LEN=1;MEANALT=1.66667;MQM=60;MQMR=60;NS=3;NUMALT=2;ODDS=0;PAIRED=0.586207;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=1159;QR=2890;RO=73;RPL=0;RPP=65.983;RPPR=161.528;RPR=29;RUN=1;SAF=29;SAP=65.983;SAR=0;SRF=73;SRP=161.528;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|1:62:50,0,12:50:1975:0,12:0,472:-24.1622,-39.2137,-201.724,0,-162.904,-159.292 0|1:26:8,11,7:8:323:11,7:420,285:-32.0356,0,-23.3143,-10.9235,-3.11352,-35.4529 0|1:26:15,1,10:15:592:1,10:39,402:-28.6225,-29.9332,-78.3376,0,-45.5085,-45.7038 dDocent_Contig_5627 18 . C T 77.3368 . AB=0.172414;ABP=30.0414;AC=1;AF=0.166667;AN=6;AO=7;CIGAR=1X;DP=81;DPB=81;DPRA=5.28571;EPP=18.2106;EPPR=163.699;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=58.2703;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=0.824324;PAO=0;PQA=0;PQR=0;PRO=0;QA=281;QR=2980;RO=74;RPL=0;RPP=18.2106;RPPR=163.699;RPR=7;RUN=1;SAF=7;SAP=18.2106;SAR=0;SRF=74;SRP=163.699;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:45:43,2:43:1734:2:82:0,-5.76667,-143.912 0/0:7:7,0:7:283:0:0:0,-2.10721,-25.843 0/1:29:24,5:24:963:5:199:-9.55757,0,-78.239 dDocent_Contig_5629 8 . A T 45.8278 . AB=0.153846;ABP=30.0702;AC=1;AF=0.166667;AN=6;AO=10;CIGAR=1X;DP=153;DPB=153;DPRA=0;EPP=24.725;EPPR=313.531;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=387;QR=5454;RO=143;RPL=0;RPP=24.725;RPPR=313.531;RPR=10;RUN=1;SAF=10;SAP=24.725;SAR=0;SRF=143;SRP=313.531;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:92:87,5:87:3308:5:195:0,-9.77056,-279.946 0/0:35:34,1:34:1304:1:38:0,-6.73878,-113.853 0/1:26:22,4:22:842:4:154:-6.40668,0,-68.2729 dDocent_Contig_5630 18 . A G 81.1701 . AB=0.235294;ABP=13.3567;AC=1;AF=0.166667;AN=6;AO=4;CIGAR=1X;DP=149;DPB=149;DPRA=0.257576;EPP=11.6962;EPPR=317.874;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=163;QR=5818;RO=145;RPL=0;RPP=11.6962;RPPR=317.874;RPR=4;RUN=1;SAF=4;SAP=11.6962;SAR=0;SRF=145;SRP=317.874;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:78:78,0:78:3148:0:0:0,-23.4803,-283.383 0/1:17:13,4:13:514:4:163:-9.94092,0,-41.4885 0/0:54:54,0:54:2156:0:0:0,-16.2556,-194.215 dDocent_Contig_5632 9 . T G 2727.1 . AB=0.446429;ABP=8.59409;AC=3;AF=0.5;AN=6;AO=100;CIGAR=1X;DP=224;DPB=224;DPRA=0;EPP=220.158;EPPR=272.273;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=3831;QR=4715;RO=124;RPL=0;RPP=220.158;RPPR=272.273;RPR=100;RUN=1;SAF=100;SAP=220.158;SAR=0;SRF=124;SRP=272.273;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:140:77,63:77:2899:63:2407:-174.697,0,-218.937 0/1:35:14,21:14:543:21:813:-62.9586,0,-38.68 0/1:49:33,16:33:1273:16:611:-40.578,0,-100.111 dDocent_Contig_5633 121 . T A 471.036 . AB=0.692308;ABP=11.3621;AC=1;AF=0.166667;AN=6;AO=20;CIGAR=1X;DP=76;DPB=76;DPRA=2.66667;EPP=46.4397;EPPR=124.613;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=3.46945e-18;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=674;QR=2015;RO=56;RPL=0;RPP=46.4397;RPPR=124.613;RPR=20;RUN=1;SAF=0;SAP=46.4397;SAR=20;SRF=0;SRP=124.613;SRR=56;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:38:36,2:36:1290:2:47:0,-6.97518,-111.933 0/0:12:12,0:12:439:0:0:0,-3.61236,-39.8538 0/1:26:8,18:8:286:18:627:-48.9275,0,-18.2576 dDocent_Contig_5635 12 . C T 304.54 . AB=0.13587;ABP=214.918;AC=3;AF=0.5;AN=6;AO=25;CIGAR=1X;DP=184;DPB=184;DPRA=0;EPP=57.2971;EPPR=348.274;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=1003;QR=6354;RO=159;RPL=0;RPP=57.2971;RPPR=348.274;RPR=25;RUN=1;SAF=25;SAP=57.2971;SAR=0;SRF=159;SRP=348.274;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:96:87,9:87:3457:9:364:-4.2253,0,-282.27 0/1:24:17,7:17:683:7:272:-17.6213,0,-54.5756 0/1:64:55,9:55:2214:9:367:-14.1293,0,-180.154 dDocent_Contig_5636 107 . N G 1316.73 . AB=0;ABP=0;AC=6;AF=1;AN=6;AO=43;CIGAR=1X;DP=43;DPB=43;DPRA=0;EPP=96.3836;EPPR=0;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=0;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=1447;QR=0;RO=0;RPL=0;RPP=96.3836;RPPR=0;RPR=43;RUN=1;SAF=0;SAP=96.3836;SAR=43;SRF=0;SRP=0;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 1/1:12:0,12:0:0:12:407:-36.9563,-3.61236,0 1/1:17:0,17:0:0:17:573:-51.8904,-5.11751,0 1/1:14:0,14:0:0:14:467:-42.3489,-4.21442,0 dDocent_Contig_5637 38 . T C 343.763 . AB=0.325581;ABP=14.3727;AC=3;AF=0.5;AN=6;AO=14;CIGAR=1M2D1X;DP=43;DPB=36;DPRA=0;EPP=33.4109;EPPR=65.983;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=564;QR=1150;RO=29;RPL=0;RPP=33.4109;RPPR=65.983;RPR=14;RUN=1;SAF=14;SAP=33.4109;SAR=0;SRF=29;SRP=65.983;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|1:18:10,8:10:394:8:325:-24.2005,0,-30.3987 0|1:15:10,5:10:395:5:198:-13.6814,0,-31.3934 0|1:10:9,1:9:361:1:41:-1.08427,0,-29.8436 dDocent_Contig_5638 38 . C T 417.777 . AB=0.126354;ABP=338.914;AC=2;AF=0.333333;AN=6;AO=37;CIGAR=1X;DP=373;DPB=373;DPRA=0;EPP=83.3548;EPPR=732.625;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=1503;QR=13468;RO=336;RPL=0;RPP=83.3548;RPPR=732.625;RPR=37;RUN=1;SAF=37;SAP=83.3548;SAR=0;SRF=336;SRP=732.625;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:235:204,31:204:8183:31:1259:-42.833,0,-665.242 0/1:42:38,4:38:1525:4:163:-2.41517,0,-124.848 0/0:96:94,2:94:3760:2:81:0,-21.2131,-330.715 dDocent_Contig_5639 33 . A G 581.511 . AB=0.47619;ABP=3.21711;AC=1;AF=0.166667;AN=6;AO=21;CIGAR=1X;DP=96;DPB=96;DPRA=0.871429;EPP=48.6112;EPPR=165.871;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=3.46945e-18;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=840;QR=3015;RO=75;RPL=0;RPP=48.6112;RPPR=165.871;RPR=21;RUN=1;SAF=21;SAP=48.6112;SAR=0;SRF=75;SRP=165.871;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:42:22,20:22:883:20:800:-59.6739,0,-67.1364 0/0:35:35,0:35:1409:0:0:0,-10.536,-127.064 0/0:19:18,1:18:723:1:40:0,-1.72389,-61.3994 dDocent_Contig_5640 9 . T C 93.4232 . AB=0.101523;ABP=274.709;AC=1;AF=0.166667;AN=6;AO=22;CIGAR=1X;DP=299;DPB=299;DPRA=4.48333;EPP=50.7827;EPPR=604.508;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=854;QR=10644;RO=277;RPL=0;RPP=50.7827;RPPR=604.508;RPR=22;RUN=1;SAF=22;SAP=50.7827;SAR=0;SRF=277;SRP=604.508;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:197:177,20:177:6794:20:776:-10.8652,0,-552.037 0/0:30:30,0:30:1149:0:0:0,-9.0309,-103.709 0/0:72:70,2:70:2701:2:78:0,-14.2707,-235.869 dDocent_Contig_5641 8 . T A 5818.91 . AB=0.0376176;ABP=595.4;AC=4;AF=0.666667;AN=6;AO=12;CIGAR=2X7M;DP=361;DPB=356.222;DPRA=0;EPP=29.068;EPPR=120.27;GTI=0;LEN=1;MEANALT=8.5;MQM=60;MQMR=60;NS=3;NUMALT=6;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=399;QR=2107;RO=54;RPL=0;RPP=29.068;RPPR=120.27;RPR=12;RUN=1;SAF=12;SAP=29.068;SAR=0;SRF=54;SRP=120.27;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|1:186:25,1,18,2,103,10,19:25:967:1,18,2,103,10,19:39,685,77,3923,324,726:-314.268,-318.588,-397.714,-265.61,-341.831,-339.618,-315.471,-391.692,-338.714,-394.296,0,-76.2246,-23.2455,-73.1081,-48.4246,-295.665,-371.885,-318.908,-368.769,-53.3051,-372.081,-262.225,-338.446,-285.468,-335.329,-19.86,-315.523,-335.932 1|1:42:2,0,6,0,26,0,5:2:79:0,6,0,26,0,5:0,234,0,972,0,193:-91.7151,-92.3172,-98.8189,-73.0799,-79.5819,-77.7757,-92.3172,-98.8189,-79.5819,-98.8189,-12.7345,-19.2364,0,-19.2364,-11.4096,-92.3172,-98.8189,-79.5819,-98.8189,-19.2364,-98.8189,-76.4655,-82.9674,-63.7299,-82.9674,-3.38669,-82.9674,-81.4622 0|1:133:27,9,14,8,61,2,11:27:1061:9,14,8,61,2,11:340,535,305,2312,75,426:-181.431,-161.692,-246.254,-145.661,-205.067,-228.719,-164.537,-223.942,-207.912,-249.401,0,-59.4072,-43.3773,-62.2528,-68.9108,-183.416,-242.82,-226.79,-245.666,-81.1306,-270.086,-154.562,-213.967,-197.937,-216.813,-52.2769,-235.691,-238.523 dDocent_Contig_5642 15 . C G 380.612 . AB=0.294118;ABP=21.7871;AC=1;AF=0.166667;AN=6;AO=18;CIGAR=1X;DP=133;DPB=133;DPRA=3.41176;EPP=42.0968;EPPR=252.73;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=731;QR=4609;RO=115;RPL=0;RPP=42.0968;RPPR=252.73;RPR=18;RUN=1;SAF=18;SAP=42.0968;SAR=0;SRF=115;SRP=252.73;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:65:62,3:62:2463:3:121:0,-8.28675,-210.525 0/0:17:17,0:17:690:0:0:0,-5.11751,-62.4289 0/1:51:36,15:36:1456:15:610:-39.8851,0,-115.932 dDocent_Contig_5643 19 . A T 327.929 . AB=0.184211;ABP=68.8402;AC=1;AF=0.166667;AN=6;AO=14;CIGAR=8M1X3M;DP=92;DPB=92.1667;DPRA=2.375;EPP=33.4109;EPPR=122.441;GTI=0;LEN=1;MEANALT=3;MQM=30;MQMR=60;NS=3;NUMALT=4;ODDS=0;PAIRED=0;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=420;QR=2169;RO=55;RPL=0;RPP=33.4109;RPPR=122.441;RPR=14;RUN=1;SAF=14;SAP=33.4109;SAR=0;SRF=55;SRP=122.441;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|0:53:29,7,0,10,7:29:1144:7,0,10,7:270,0,399,203:-24.1613,-10.709,-102.762,-32.8912,-104.87,-127.04,0,-72.0034,-94.1756,-91.1653,-18.6614,-90.6215,-112.789,-79.9285,-110.682 0|0:16:15,0,0,0,0:15:597:0,0,0,0:0,0,0,0:0,-4.51545,-53.8966,-4.51545,-53.8966,-53.8966,-4.51545,-53.8966,-53.8966,-53.8966,-4.51545,-53.8966,-53.8966,-53.8966,-53.8966 0|1:23:11,0,3,2,7:11:428:0,3,2,7:0,122,71,217:-12.1544,-15.4658,-50.6702,-5.3751,-40.5993,-39.6962,-9.67694,-44.8876,-34.8158,-44.2855,0,-35.1757,-25.1082,-29.3977,-33.0685 dDocent_Contig_5644 20 . C T 440.568 . AB=0.413043;ABP=6.03148;AC=3;AF=0.5;AN=6;AO=19;CIGAR=6M1X1M;DP=46;DPB=43.75;DPRA=0;EPP=44.2683;EPPR=55.1256;GTI=0;LEN=1;MEANALT=1.33333;MQM=60;MQMR=60;NS=3;NUMALT=2;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=687;QR=941;RO=24;RPL=0;RPP=44.2683;RPPR=55.1256;RPR=19;RUN=1;SAF=19;SAP=44.2683;SAR=0;SRF=24;SRP=55.1256;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|1:21:13,0,8:13:515:0,8:0,286:-19.7615,-23.6749,-66.0879,0,-42.785,-40.3767 0|1:13:7,0,6:7:276:0,6:0,225:-16.6958,-18.803,-41.522,0,-23.1025,-21.2963 0|1:12:4,3,5:4:150:3,5:106,176:-13.1223,-5.69625,-17.0885,0,-3.67709,-10.7924 dDocent_Contig_5645 41 . A G 128.012 . AB=0.140845;ABP=82.5596;AC=1;AF=0.166667;AN=6;AO=16;CIGAR=1X;DP=209;DPB=209;DPRA=2.17949;EPP=37.7539;EPPR=422.104;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=622;QR=7420;RO=193;RPL=0;RPP=37.7539;RPPR=422.104;RPR=16;RUN=1;SAF=16;SAP=37.7539;SAR=0;SRF=193;SRP=422.104;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:99:93,6:93:3616:6:226:0,-9.10545,-304.789 0/0:39:39,0:39:1435:0:0:0,-11.7402,-129.39 0/1:71:61,10:61:2369:10:396:-14.6251,0,-192 dDocent_Contig_5647 96 . C T 118.375 . AB=0.241379;ABP=19.8579;AC=1;AF=0.166667;AN=6;AO=8;CIGAR=1X;DP=72;DPB=72;DPRA=0.884615;EPP=20.3821;EPPR=141.985;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=280;QR=2212;RO=64;RPL=8;RPP=20.3821;RPPR=141.985;RPR=0;RUN=1;SAF=8;SAP=20.3821;SAR=0;SRF=64;SRP=141.985;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:26:26,0:26:889:0:0:0,-7.82678,-80.3222 0/0:17:16,1:16:556:1:35:0,-1.61888,-46.87 0/1:29:22,7:22:767:7:245:-13.6614,0,-60.6223 dDocent_Contig_5648 12 . A G 1785.39 . AB=0.516854;ABP=3.22989;AC=4;AF=0.666667;AN=6;AO=59;CIGAR=1X;DP=102;DPB=102;DPRA=0;EPP=131.127;EPPR=96.3836;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=6.93889e-18;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=2310;QR=1711;RO=43;RPL=0;RPP=131.127;RPPR=96.3836;RPR=59;RUN=1;SAF=59;SAP=131.127;SAR=0;SRF=43;SRP=96.3836;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:53:22,31:22:884:31:1202:-92.494,0,-63.9137 1/1:13:0,13:0:0:13:518:-46.9673,-3.91339,0 0/1:36:21,15:21:827:15:590:-42.6004,0,-63.9025 dDocent_Contig_5649 137 . G T 929.159 . AB=0.537313;ABP=3.82055;AC=3;AF=0.5;AN=6;AO=36;CIGAR=1X;DP=67;DPB=67;DPRA=0;EPP=81.1833;EPPR=70.3259;GTI=0;LEN=1;MEANALT=1;MQM=55.8333;MQMR=60;NS=3;NUMALT=1;ODDS=3.46945e-18;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=1308;QR=1066;RO=31;RPL=0;RPP=81.1833;RPPR=70.3259;RPR=36;RUN=1;SAF=0;SAP=81.1833;SAR=36;SRF=0;SRP=70.3259;SRR=31;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:20:11,9:11:379:9:334:-24.3593,0,-28.4212 0/1:31:17,14:17:585:14:504:-36.3072,0,-43.643 0/1:16:3,13:3:102:13:470:-37.772,0,-4.70032 dDocent_Contig_5651 42 . G A 391.814 . AB=0.15;ABP=194.534;AC=2;AF=0.333333;AN=6;AO=32;CIGAR=1X;DP=268;DPB=268;DPRA=0;EPP=72.4974;EPPR=515.478;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=1268;QR=8561;RO=236;RPL=0;RPP=72.4974;RPPR=515.478;RPR=32;RUN=1;SAF=32;SAP=72.4974;SAR=0;SRF=236;SRP=515.478;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:140:119,21:119:4349:21:838:-33.5907,0,-349.368 0/1:40:34,6:34:1199:6:231:-9.1136,0,-96.1603 0/0:88:83,5:83:3013:5:199:0,-8.20389,-253.067 dDocent_Contig_5653 24 . G A 407.29 . AB=0.123711;ABP=360.9;AC=1;AF=0.166667;AN=6;AO=42;CIGAR=1X;DP=495;DPB=495;DPRA=0;EPP=94.2121;EPPR=986.687;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=1679;QR=18028;RO=453;RPL=0;RPP=94.2121;RPPR=986.687;RPR=42;RUN=1;SAF=42;SAP=94.2121;SAR=0;SRF=453;SRP=986.687;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:291:255,36:255:10155:36:1440:-42.2519,0,-825.71 0/0:90:88,2:88:3466:2:80:0,-19.5009,-304.407 0/0:114:110,4:110:4407:4:159:0,-19.6255,-381.882 dDocent_Contig_5654 14 . A T 5212.78 . AB=0.113208;ABP=71.8828;AC=0;AF=0;AN=6;AO=6;CIGAR=1X2M1X2M1X2M1X;DP=248;DPB=248;DPRA=0;EPP=16.0391;EPPR=92.0407;GTI=0;LEN=1;MEANALT=3;MQM=60;MQMR=60;NS=3;NUMALT=3;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=236;QR=1602;RO=41;RPL=0;RPP=16.0391;RPPR=92.0407;RPR=6;RUN=1;SAF=6;SAP=16.0391;SAR=0;SRF=41;SRP=92.0407;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|0:151:33,0,92,23:33:1286:0,92,23:0,3632,931:-288.905,-298.839,-404.531,0,-105.685,-77.9903,-222.075,-327.767,-28.9177,-320.844 0|0:44:2,0,28,13:2:80:0,28,13:0,1103,514:-125.854,-126.456,-133.046,-35.7168,-42.308,-33.8792,-84.1593,-90.7499,0,-86.8365 0|0:53:6,6,35,6:6:236:6,35,6:236,1379,239:-111.909,-94.3014,-111.908,-0.267834,-0.267333,-9.14398,-94.0358,-94.0353,0,-111.643 dDocent_Contig_5655 165 . T A 40.5741 . AB=0.109375;ABP=87.8334;AC=1;AF=0.166667;AN=6;AO=8;CIGAR=1X;DP=109;DPB=109;DPRA=1.20312;EPP=4.09604;EPPR=3.0318;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=291;QR=3814;RO=101;RPL=3;RPP=4.09604;RPPR=3.0318;RPR=5;RUN=1;SAF=0;SAP=20.3821;SAR=8;SRF=0;SRP=222.329;SRR=101;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:64:57,7:57:2143:7:272:-5.58024,0,-173.804 0/0:13:12,1:12:428:1:19:0,-2.01342,-36.9502 0/0:32:32,0:32:1243:0:0:0,-9.63296,-112.151 dDocent_Contig_5656 8 . G A 2609.12 . AB=0.682927;ABP=38.7602;AC=4;AF=0.666667;AN=6;AO=126;CIGAR=1X2M;DP=174;DPB=174;DPRA=0;EPP=276.616;EPPR=96.3836;GTI=0;LEN=1;MEANALT=1.33333;MQM=36.8492;MQMR=60;NS=3;NUMALT=2;ODDS=0;PAIRED=0.277778;PAIREDR=0.906977;PAO=0;PQA=0;PQR=0;PRO=0;QA=3764;QR=1612;RO=43;RPL=0;RPP=276.616;RPPR=96.3836;RPR=126;RUN=1;SAF=126;SAP=276.616;SAR=0;SRF=43;SRP=96.3836;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|1:81:15,0,66:15:554:0,66:0,1803:-122.248,-126.763,-172.093,0,-45.6757,-25.8078 0|1:42:24,0,18:24:910:0,18:0,637:-44.1668,-51.3915,-126.025,0,-74.9947,-69.5761 1|1:51:4,5,42:4:148:5,42:189,1324:-98.0197,-87.9247,-98.533,-0.498435,-1.3904,0 dDocent_Contig_5657 43 . C A 1219.04 . AB=0.182768;ABP=337.797;AC=3;AF=0.5;AN=6;AO=70;CIGAR=1X;DP=383;DPB=383;DPRA=0;EPP=155.013;EPPR=680.51;GTI=0;LEN=1;MEANALT=1.33333;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=2688;QR=12354;RO=312;RPL=0;RPP=155.013;RPPR=680.51;RPR=70;RUN=1;SAF=70;SAP=155.013;SAR=0;SRF=312;SRP=680.51;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:197:168,29:168:6684:29:1059:-36.2672,0,-541.96 0/1:64:53,11:53:2064:11:433:-20.0548,0,-166.677 0/1:122:91,30:91:3606:30:1196:-71.1049,0,-287.757 dDocent_Contig_5658 137 . C A 2430.07 . AB=0.738318;ABP=55.7953;AC=4;AF=0.666667;AN=6;AO=92;CIGAR=1X;DP=120;DPB=120;DPRA=0;EPP=202.786;EPPR=63.8115;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=3087;QR=939;RO=28;RPL=0;RPP=202.786;RPPR=63.8115;RPR=92;RUN=1;SAF=0;SAP=202.786;SAR=92;SRF=0;SRP=63.8115;SRR=28;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:85:19,66:19:640:66:2215:-174.027,0,-32.3279 1/1:13:0,13:0:0:13:427:-38.7468,-3.91339,0 0/1:22:9,13:9:299:13:445:-33.7556,0,-20.6104 dDocent_Contig_5659 16 . A G 1807.2 . AB=0.625;ABP=16.0391;AC=3;AF=0.5;AN=6;AO=60;CIGAR=1X;DP=96;DPB=96;DPRA=0;EPP=133.299;EPPR=81.1833;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=2380;QR=1427;RO=36;RPL=0;RPP=133.299;RPPR=81.1833;RPR=60;RUN=1;SAF=60;SAP=133.299;SAR=0;SRF=36;SRP=81.1833;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:47:20,27:20:793:27:1086:-83.875,0,-57.5408 0/1:14:3,11:3:121:11:448:-36.4616,0,-7.06557 0/1:35:13,22:13:513:22:846:-65.9065,0,-35.9721 dDocent_Contig_5660 35 . A T 383.634 . AB=0.0666667;ABP=76.4061;AC=1;AF=0.166667;AN=6;AO=3;CIGAR=2X2M1X5M3I6M;DP=52;DPB=51.75;DPRA=3.21429;EPP=9.52472;EPPR=57.5966;GTI=0;LEN=1;MEANALT=3;MQM=60;MQMR=60;NS=3;NUMALT=3;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=113;QR=1106;RO=29;RPL=0;RPP=9.52472;RPPR=57.5966;RPR=3;RUN=1;SAF=3;SAP=9.52472;SAR=0;SRF=29;SRP=65.983;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|0:33:14,2,3,14:14:537:2,3,14:73,105,537:-39.877,-38.1295,-81.6066,-35.5548,-73.6704,-78.7293,0,-38.1348,-35.5601,-39.8823 0|1:12:9,1,0,1:9:344:1,0,1:40,0,38:-0.58747,0,-27.9138,-3.29674,-28.2148,-31.5112,-0.18849,-25.0988,-28.3952,-28.0942 0|0:7:6,0,0,0:6:225:0,0,0:0,0,0:0,-1.80618,-20.2128,-1.80618,-20.2128,-20.2128,-1.80618,-20.2128,-20.2128,-20.2128 dDocent_Contig_5661 11 . C T 6065.33 . AB=0.06875;ABP=261.47;AC=1;AF=0.166667;AN=6;AO=11;CIGAR=2X;DP=224;DPB=224;DPRA=0;EPP=26.8965;EPPR=59.4686;GTI=0;LEN=1;MEANALT=2;MQM=60;MQMR=60;NS=3;NUMALT=2;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=440;QR=1054;RO=26;RPL=0;RPP=26.8965;RPPR=59.4686;RPR=11;RUN=1;SAF=11;SAP=26.8965;SAR=0;SRF=26;SRP=59.4686;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|0:109:13,4,92:13:527:4,92:158,3666:-297.962,-288.876,-331.131,0,-30.469,-15.7718 1|0:51:5,7,39:5:204:7,39:282,1517:-129.534,-107.794,-122.52,-6.40666,0,-11.5 0|0:64:8,0,56:8:323:0,56:0,2263:-184.56,-186.968,-213.594,0,-27.0298,-10.1722 dDocent_Contig_5662 13 . A G 1431.67 . AB=0.335404;ABP=40.8964;AC=2;AF=0.333333;AN=6;AO=55;CIGAR=1X;DP=198;DPB=198;DPRA=0;EPP=122.441;EPPR=313.531;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=1.38778e-17;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=2203;QR=5713;RO=143;RPL=0;RPP=122.441;RPPR=313.531;RPR=55;RUN=1;SAF=55;SAP=122.441;SAR=0;SRF=143;SRP=313.531;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:107:65,42:65:2597:42:1679:-119.126,0,-201.65 0/0:37:36,1:36:1446:1:41:0,-7.04354,-126.295 0/1:54:42,12:42:1670:12:483:-27.5644,0,-134.27 dDocent_Contig_5663 9 . T C 180.401 . AB=0.196078;ABP=43.9277;AC=1;AF=0.166667;AN=6;AO=10;CIGAR=1X;DP=71;DPB=71;DPRA=5.1;EPP=24.725;EPPR=135.47;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=384;QR=2332;RO=61;RPL=0;RPP=24.725;RPPR=135.47;RPR=10;RUN=1;SAF=10;SAP=24.725;SAR=0;SRF=61;SRP=135.47;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:51:41,10:41:1573:10:384:-19.563,0,-126.485 0/0:8:8,0:8:310:0:0:0,-2.40824,-28.2636 0/0:12:12,0:12:449:0:0:0,-3.61236,-40.7515 dDocent_Contig_5664 151 . A G 33.6035 . AB=0.148148;ABP=32.0437;AC=1;AF=0.166667;AN=6;AO=5;CIGAR=1X;DP=98;DPB=98;DPRA=3.58333;EPP=13.8677;EPPR=204.957;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=0.989247;PAO=0;PQA=0;PQR=0;PRO=0;QA=182;QR=3626;RO=93;RPL=0;RPP=13.8677;RPPR=204.957;RPR=5;RUN=1;SAF=0;SAP=13.8677;SAR=5;SRF=0;SRP=204.957;SRR=93;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:59:58,1:58:2262:1:38:0,-13.9635,-199.98 0/0:12:12,0:12:471:0:0:0,-3.61236,-42.7405 0/1:27:23,4:23:893:4:144:-5.18407,0,-72.5558 dDocent_Contig_5665 27 . C A 483.931 . AB=0.13289;ABP=355.359;AC=2;AF=0.333333;AN=6;AO=41;CIGAR=1X;DP=342;DPB=342;DPRA=0;EPP=92.0407;EPPR=654.452;GTI=0;LEN=1;MEANALT=1.33333;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=1617;QR=11802;RO=300;RPL=0;RPP=92.0407;RPPR=654.452;RPR=41;RUN=1;SAF=41;SAP=92.0407;SAR=0;SRF=300;SRP=654.452;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:184:160,23:160:6310:23:907:-26.5049,0,-512.249 0/0:41:40,1:40:1547:1:40:0,-8.34655,-135.479 0/1:117:100,17:100:3945:17:670:-25.4111,0,-319.838 dDocent_Contig_5666 8 . A C 33.8995 . AB=0.166667;ABP=20.3821;AC=1;AF=0.166667;AN=6;AO=3;CIGAR=1X;DP=76;DPB=76;DPRA=0.62069;EPP=9.52472;EPPR=159.356;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=114;QR=2756;RO=72;RPL=0;RPP=9.52472;RPPR=159.356;RPR=3;RUN=1;SAF=3;SAP=9.52472;SAR=0;SRF=72;SRP=159.356;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:41:41,0:41:1581:0:0:0,-12.3422,-142.557 0/1:18:15,3:15:560:3:114:-5.21368,0,-45.3166 0/0:17:16,0:16:615:0:0:0,-4.81648,-55.3 dDocent_Contig_5668 11 . T A 642.464 . AB=0.636364;ABP=8.34028;AC=1;AF=0.166667;AN=6;AO=21;CIGAR=1X;DP=46;DPB=46;DPRA=5.07692;EPP=48.6112;EPPR=57.2971;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=1.73472e-18;PAIRED=0.904762;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=841;QR=983;RO=25;RPL=0;RPP=48.6112;RPPR=57.2971;RPR=21;RUN=1;SAF=21;SAP=48.6112;SAR=0;SRF=25;SRP=57.2971;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:7:7,0:7:271:0:0:0,-2.10721,-24.7507 0/1:33:12,21:12:470:21:841:-66.0703,0,-32.7146 0/0:6:6,0:6:242:0:0:0,-1.80618,-22.1575 dDocent_Contig_5669 59 . G A 831.083 . AB=0.367816;ABP=16.2139;AC=3;AF=0.5;AN=6;AO=32;CIGAR=1X;DP=87;DPB=87;DPRA=0;EPP=72.4974;EPPR=122.441;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=0.981818;PAO=0;PQA=0;PQR=0;PRO=0;QA=1264;QR=2142;RO=55;RPL=32;RPP=72.4974;RPPR=122.441;RPR=0;RUN=1;SAF=32;SAP=72.4974;SAR=0;SRF=55;SRP=122.441;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:32:23,9:23:895:9:367:-23.7623,0,-71.2213 0/1:26:15,11:15:567:11:433:-31.4923,0,-43.5283 0/1:29:17,12:17:680:12:464:-33.3767,0,-52.7999 dDocent_Contig_5670 65 . G T 90.7509 . AB=0.147541;ABP=68.8308;AC=1;AF=0.166667;AN=6;AO=9;CIGAR=1X;DP=94;DPB=94;DPRA=3.69697;EPP=22.5536;EPPR=187.585;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=318;QR=2898;RO=85;RPL=9;RPP=22.5536;RPPR=187.585;RPR=0;RUN=1;SAF=9;SAP=22.5536;SAR=0;SRF=85;SRP=187.585;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:61:52,9:52:1769:9:318:-10.5979,0,-141.13 0/0:6:6,0:6:210:0:0:0,-1.80618,-19.2425 0/0:27:27,0:27:919:0:0:0,-8.12781,-83.0207 dDocent_Contig_5671 27 . T C 78.7572 . AB=0.131148;ABP=75.0961;AC=2;AF=0.333333;AN=6;AO=8;CIGAR=1X;DP=79;DPB=79;DPRA=1.69444;EPP=20.3821;EPPR=157.185;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=319;QR=2790;RO=71;RPL=0;RPP=20.3821;RPPR=157.185;RPR=8;RUN=1;SAF=8;SAP=20.3821;SAR=0;SRF=71;SRP=157.185;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:21:19,2:19:725:2:82:-1.45805,0,-59.2424 0/1:40:34,6:34:1357:6:237:-9.65994,0,-110.348 0/0:18:18,0:18:708:0:0:0,-5.41854,-64.0445 dDocent_Contig_5673 50 . T C 1193.69 . AB=0.284091;ABP=74.2741;AC=2;AF=0.333333;AN=6;AO=51;CIGAR=1X;DP=236;DPB=236;DPRA=0;EPP=113.755;EPPR=404.733;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=1976;QR=7340;RO=185;RPL=51;RPP=113.755;RPPR=404.733;RPR=0;RUN=1;SAF=51;SAP=113.755;SAR=0;SRF=185;SRP=404.733;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:117:72,45:72:2839:45:1732:-120.878,0,-220.384 0/0:60:59,1:59:2323:1:40:0,-14.0661,-205.238 0/1:59:54,5:54:2178:5:204:-0.983263,0,-178.427 dDocent_Contig_5674 40 . A G 495.24 . AB=0.165775;ABP=184.45;AC=3;AF=0.5;AN=6;AO=31;CIGAR=1X;DP=187;DPB=187;DPRA=0;EPP=70.3259;EPPR=341.76;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=0.99359;PAO=0;PQA=0;PQR=0;PRO=0;QA=1225;QR=6143;RO=156;RPL=0;RPP=70.3259;RPPR=341.76;RPR=31;RUN=1;SAF=31;SAP=70.3259;SAR=0;SRF=156;SRP=341.76;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:117:94,23:94:3695:23:904:-46.4387,0,-297.373 0/1:29:25,4:25:991:4:157:-5.77856,0,-80.76 0/1:41:37,4:37:1457:4:164:-2.80767,0,-119.04 dDocent_Contig_5675 14 . G A 2704.43 . AB=0.460396;ABP=5.76226;AC=3;AF=0.5;AN=6;AO=93;CIGAR=1X;DP=202;DPB=202;DPRA=0;EPP=204.957;EPPR=239.701;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=3733;QR=4374;RO=109;RPL=0;RPP=204.957;RPPR=239.701;RPR=93;RUN=1;SAF=93;SAP=204.957;SAR=0;SRF=109;SRP=239.701;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:114:79,35:79:3166:35:1400:-91.9371,0,-250.681 0/1:29:9,20:9:368:20:791:-62.7764,0,-24.7555 0/1:59:21,38:21:840:38:1542:-121.252,0,-58.1503 dDocent_Contig_5676 20 . C T 56.8664 . AB=0.0545455;ABP=97.8049;AC=0;AF=0;AN=6;AO=3;CIGAR=1M1X12M;DP=121;DPB=117.143;DPRA=0;EPP=9.52472;EPPR=165.871;GTI=0;LEN=1;MEANALT=8;MQM=60;MQMR=60;NS=3;NUMALT=8;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=118;QR=2941;RO=75;RPL=0;RPP=9.52472;RPPR=165.871;RPR=3;RUN=1;SAF=3;SAP=9.52472;SAR=0;SRF=75;SRP=165.871;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|0:50:29,3,3,0,4,4,0,3,4:29:1145:3,3,0,4,4,0,3,4:112,114,0,162,163,0,92,130:-4.7267,-4.29713,-97.6263,-4.10663,-89.1817,-97.4365,-13.4566,-98.5294,-98.3396,-107.687,-0.0895809,-85.1692,-84.9793,-94.3272,-93.123,0,-85.0799,-84.8901,-94.238,-80.8774,-93.0338,-13.4566,-98.5294,-98.3396,-107.687,-94.3272,-94.238,-107.687,-6.09967,-91.1676,-90.9778,-100.325,-86.9653,-86.876,-100.325,-99.422,-2.97877,-88.047,-87.8572,-97.2045,-83.8447,-83.7554,-97.2045,-89.8431,-96.0004 0|0:16:12,1,0,1,0,2,0,0,0:12:478:1,0,1,0,2,0,0,0:40,0,39,0,82,0,0,0:-3.16338,-3.48745,-42.5449,-6.77574,-42.8459,-46.1352,-3.57394,-39.6407,-42.9299,-42.6289,-6.77574,-42.8459,-46.1352,-42.9299,-46.1352,0,-36.0761,-39.3655,-36.1602,-39.3655,-38.7635,-6.77574,-42.8459,-46.1352,-42.9299,-46.1352,-39.3655,-46.1352,-6.77574,-42.8459,-46.1352,-42.9299,-46.1352,-39.3655,-46.1352,-46.1352,-6.77574,-42.8459,-46.1352,-42.9299,-46.1352,-39.3655,-46.1352,-46.1352,-46.1352 0|0:55:34,2,4,4,4,0,3,0,0:34:1318:2,4,4,4,0,3,0,0:78,162,156,158,0,118,0,0:-3.12571,-6.9604,-114.631,0,-101.874,-107.07,-0.540602,-102.412,-95.4532,-107.609,-0.359104,-102.231,-95.2724,-95.8108,-107.428,-13.3607,-115.233,-108.274,-108.813,-108.632,-121.634,-3.65538,-105.527,-98.5686,-99.107,-98.9262,-111.928,-111.025,-13.3607,-115.233,-108.274,-108.813,-108.632,-121.634,-111.928,-121.634,-13.3607,-115.233,-108.274,-108.813,-108.632,-121.634,-111.928,-121.634,-121.634 dDocent_Contig_5677 45 . T C 30.9305 . AB=0.103448;ABP=82.2316;AC=1;AF=0.166667;AN=6;AO=6;CIGAR=1X;DP=98;DPB=98;DPRA=2.9;EPP=16.0391;EPPR=200.614;GTI=0;LEN=1;MEANALT=2;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=242;QR=3612;RO=91;RPL=0;RPP=16.0391;RPPR=200.614;RPR=6;RUN=1;SAF=6;SAP=16.0391;SAR=0;SRF=91;SRP=200.614;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:58:51,6:51:2018:6:242:-4.61558,0,-164.27 0/0:18:18,0:18:719:0:0:0,-5.41854,-65.0336 0/0:22:22,0:22:875:0:0:0,-6.62266,-79.061 dDocent_Contig_5678 9 . G T 1410.02 . AB=0.0961039;ABP=548.535;AC=0;AF=0;AN=6;AO=37;CIGAR=1M1X9M;DP=385;DPB=385.091;DPRA=0;EPP=83.3548;EPPR=335.246;GTI=0;LEN=1;MEANALT=9;MQM=60;MQMR=58.6536;NS=3;NUMALT=5;ODDS=0;PAIRED=1;PAIREDR=0.96732;PAO=0;PQA=0;PQR=0;PRO=0;QA=1419;QR=5959;RO=153;RPL=0;RPP=83.3548;RPPR=335.246;RPR=37;RUN=1;SAF=37;SAP=83.3548;SAR=0;SRF=153;SRP=335.246;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|0:258:104,2,36,27,19,36:104:4059:2,36,27,19,36:80,1449,1103,732,1430:-87.8937,-112.611,-435.693,0,-317.094,-312.847,-30.1734,-347.267,-234.656,-345.73,-59.0959,-376.189,-263.578,-293.752,-377.059,-1.47962,-318.573,-205.962,-236.135,-265.057,-314.326 0|0:37:13,6,9,0,6,1:13:504:6,9,0,6,1:234,363,0,222,41:-25.9447,-10.6231,-50.1552,0,-22.1065,-38.6332,-29.8581,-51.9614,-41.3425,-71.1956,-11.705,-33.8069,-23.1872,-53.0405,-51.2343,-26.5258,-48.6293,-38.0102,-67.8636,-49.7085,-67.5626 0|0:90:36,0,13,14,12,1:36:1396:0,13,14,12,1:0,502,531,465,41:-32.6808,-43.5179,-158.208,-2.38317,-117.074,-113.16,0,-114.69,-73.5555,-110.475,-5.31475,-120.006,-78.8712,-76.4872,-116.393,-40.1334,-154.824,-113.689,-111.305,-116.621,-154.523 dDocent_Contig_5679 17 . C A 214.666 . AB=0.114173;ABP=331.433;AC=2;AF=0.333333;AN=6;AO=30;CIGAR=1X;DP=269;DPB=269;DPRA=0;EPP=68.1545;EPPR=519.821;GTI=0;LEN=1;MEANALT=1.33333;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=1159;QR=9530;RO=238;RPL=0;RPP=68.1545;RPPR=519.821;RPR=30;RUN=1;SAF=30;SAP=68.1545;SAR=0;SRF=238;SRP=519.821;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:183:166,16:166:6662:16:648:-3.7393,0,-544.367 0/0:15:14,1:14:566:1:41:0,-0.420883,-47.1877 0/1:71:58,13:58:2302:13:470:-21.247,0,-185.973 dDocent_Contig_5680 7 . T A 11902.6 . AB=0.778261;ABP=157.695;AC=4;AF=0.666667;AN=6;AO=384;CIGAR=1X4M;DP=458;DPB=458;DPRA=0;EPP=836.856;EPPR=122.441;GTI=0;LEN=1;MEANALT=2.66667;MQM=59.6484;MQMR=60;NS=3;NUMALT=2;ODDS=0;PAIRED=0.966146;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=14692;QR=2115;RO=55;RPL=0;RPP=836.856;RPPR=122.441;RPR=384;RUN=1;SAF=384;SAP=836.856;SAR=0;SRF=55;SRP=122.441;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 1|1:228:18,1,205:18:688:1,205:36,7835:-642.36,-644.841,-700.994,-5.11589,-58.7729,0 0|1:53:6,0,46:6:233:0,46:0,1741:-140.903,-142.709,-161.856,0,-19.1701,-5.32267 0|1:177:31,12,133:31:1194:12,133:462,5116:-410.52,-381.918,-476.343,0,-60.1041,-58.0012 dDocent_Contig_5681 60 . C T 3962.95 . AB=0.683333;ABP=20.5268;AC=4;AF=0.666667;AN=6;AO=139;CIGAR=1X;DP=166;DPB=166;DPRA=0;EPP=304.845;EPPR=61.6401;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=4888;QR=907;RO=27;RPL=139;RPP=304.845;RPPR=61.6401;RPR=0;RUN=1;SAF=139;SAP=304.845;SAR=0;SRF=27;SRP=61.6401;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 1/1:106:8,98:8:251:98:3442:-287.096,-9.01487,0 0/1:32:13,19:13:446:19:663:-50.3572,0,-30.8325 0/1:28:6,22:6:210:22:783:-62.3646,0,-10.8136 dDocent_Contig_5682 10 . G A 8686.95 . AB=0.748634;ABP=199.534;AC=3;AF=0.5;AN=6;AO=274;CIGAR=1X;DP=366;DPB=366;DPRA=0;EPP=597.994;EPPR=202.786;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=10937;QR=3679;RO=92;RPL=0;RPP=597.994;RPPR=202.786;RPR=274;RUN=1;SAF=274;SAP=597.994;SAR=0;SRF=92;SRP=202.786;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:215:58,157:58:2311:157:6239:-496.547,0,-143.433 0/1:56:6,50:6:242:50:2016:-164.767,0,-5.29927 0/1:95:28,67:28:1126:67:2682:-212.904,0,-73.0252 dDocent_Contig_5683 38 . A C 219.045 . AB=0.346154;ABP=8.35546;AC=2;AF=0.333333;AN=6;AO=9;CIGAR=2X;DP=33;DPB=33;DPRA=1.85714;EPP=22.5536;EPPR=55.1256;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=361;QR=939;RO=24;RPL=0;RPP=22.5536;RPPR=55.1256;RPR=9;RUN=1;SAF=9;SAP=22.5536;SAR=0;SRF=24;SRP=55.1256;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|1:17:10,7:10:388:7:281:-20.5447,0,-30.1572 0|0:7:7,0:7:275:0:0:0,-2.10721,-25.1178 0|1:9:7,2:7:276:2:80:-4.88252,0,-22.4995 dDocent_Contig_5684 23 . A G 2415.22 . AB=0.134228;ABP=176.16;AC=0;AF=0;AN=6;AO=20;CIGAR=2X;DP=168;DPB=168;DPRA=0;EPP=46.4397;EPPR=148.499;GTI=0;LEN=1;MEANALT=2;MQM=60;MQMR=60;NS=3;NUMALT=2;ODDS=2.77556e-17;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=764;QR=2626;RO=67;RPL=0;RPP=46.4397;RPPR=148.499;RPR=20;RUN=1;SAF=20;SAP=46.4397;SAR=0;SRF=67;SRP=148.499;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|0:94:31,11,52:31:1209:11,52:413,2064:-160.574,-136.086,-232.139,0,-65.5576,-83.7245 0|0:19:11,0,8:11:438:0,8:0,327:-24.0805,-27.3919,-63.4519,0,-36.4638,-34.0556 0|0:55:25,9,21:25:979:9,21:351,848:-62.3903,-41.0704,-118.846,0,-51.6429,-74.1707 dDocent_Contig_5686 12 . C A 180.721 . AB=0.0375;ABP=151.648;AC=2;AF=0.333334;AN=6;AO=3;CIGAR=1M1X8M1X12M;DP=94;DPB=73.2609;DPRA=0;EPP=9.52472;EPPR=57.2971;GTI=0;LEN=1;MEANALT=4.5;MQM=60;MQMR=60;NS=3;NUMALT=5;ODDS=5.55112e-17;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=118;QR=965;RO=25;RPL=0;RPP=9.52472;RPPR=57.2971;RPR=3;RUN=1;SAF=3;SAP=9.52472;SAR=0;SRF=25;SRP=57.2971;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|1:49:16,0,2,0,2,0:16:623:0,2,0,2,0:0,79,0,77,0:-1.68453,-6.50101,-57.7033,0,-51.2025,-50.6004,-6.50101,-57.7033,-51.2025,-57.7033,-0.179736,-51.382,-44.8811,-51.382,-50.7799,-6.50101,-57.7033,-51.2025,-57.7033,-51.382,-57.7033 1|0:14:0,0,0,2,0,3:0:0:0,0,2,0,3:0,0,81,0,109:-15.5723,-15.5723,-15.5723,-15.5723,-15.5723,-15.5723,-8.89156,-8.89156,-8.89156,-8.2895,-15.5723,-15.5723,-15.5723,-8.89156,-15.5723,-6.67926,-6.67926,-6.67926,0,-6.67926,-5.77617 0|0:31:9,2,0,0,1,3:9:342:2,0,0,1,3:80,0,0,41,106:-5.91857,-2.03592,-29.4764,-8.62784,-30.0784,-36.6698,-8.62784,-30.0784,-36.6698,-36.6698,-5.24245,-26.6933,-33.2848,-33.2848,-32.9838,0,-21.4491,-28.0405,-28.0405,-24.6554,-27.1374 dDocent_Contig_5687 17 . A G 378.734 . AB=0;ABP=0;AC=6;AF=1;AN=6;AO=19;CIGAR=1X1M1X1M1X2M1X2M1X;DP=20;DPB=20;DPRA=0;EPP=44.2683;EPPR=0;GTI=0;LEN=1;MEANALT=1.33333;MQM=22.2632;MQMR=0;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=686;QR=0;RO=0;RPL=0;RPP=44.2683;RPPR=0;RPR=19;RUN=1;SAF=19;SAP=44.2683;SAR=0;SRF=0;SRP=0;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 1|1:5:0,5:0:0:5:183:-10.8706,-1.50515,0 1|1:10:0,9:0:0:9:327:-16.957,-2.70927,0 1|1:5:0,5:0:0:5:176:-9.56862,-1.50515,0 dDocent_Contig_5688 93 . C T 1211.51 . AB=0.433333;ABP=7.64277;AC=3;AF=0.5;AN=6;AO=52;CIGAR=1X;DP=120;DPB=120;DPRA=0;EPP=115.927;EPPR=150.67;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=1798;QR=2357;RO=68;RPL=52;RPP=115.927;RPPR=150.67;RPR=0;RUN=1;SAF=52;SAP=115.927;SAR=0;SRF=68;SRP=150.67;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:41:24,17:24:833:17:589:-40.9945,0,-62.9463 0/1:44:26,18:26:902:18:622:-43.0594,0,-68.251 0/1:35:18,17:18:622:17:587:-42.6196,0,-45.7686 dDocent_Contig_5689 95 . G A 54.1971 . AB=0.120482;ABP=106.849;AC=1;AF=0.166667;AN=6;AO=14;CIGAR=1X;DP=140;DPB=140;DPRA=6.5;EPP=33.4109;EPPR=276.616;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=6.93889e-18;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=490;QR=4309;RO=126;RPL=14;RPP=33.4109;RPPR=276.616;RPR=0;RUN=1;SAF=14;SAP=33.4109;SAR=0;SRF=126;SRP=276.616;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:83:73,10:73:2513:10:351:-6.94252,0,-201.44 0/0:10:10,0:10:348:0:0:0,-3.0103,-31.6555 0/0:47:43,4:43:1448:4:139:0,-1.29572,-117.758 dDocent_Contig_5691 171 . A T 4755.8 . AB=0.634981;ABP=44.6316;AC=3;AF=0.5;AN=6;AO=167;CIGAR=1X;DP=263;DPB=263;DPRA=0;EPP=365.646;EPPR=211.472;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=6218;QR=3662;RO=96;RPL=167;RPP=365.646;RPPR=211.472;RPR=0;RUN=1;SAF=0;SAP=365.646;SAR=167;SRF=0;SRP=211.472;SRR=96;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:135:56,79:56:2161:79:2979:-227.626,0,-154.066 0/1:39:6,33:6:234:33:1161:-93.024,0,-9.68937 0/1:89:34,55:34:1267:55:2078:-160.453,0,-87.5137 dDocent_Contig_5693 24 . A G 193.651 . AB=0.32;ABP=10.0459;AC=1;AF=0.166667;AN=6;AO=8;CIGAR=1X;DP=47;DPB=47;DPRA=2.27273;EPP=20.3821;EPPR=87.6977;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=315;QR=1529;RO=39;RPL=0;RPP=20.3821;RPPR=87.6977;RPR=8;RUN=1;SAF=8;SAP=20.3821;SAR=0;SRF=39;SRP=87.6977;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:13:13,0:13:522:0:0:0,-3.91339,-47.3275 0/1:25:17,8:17:649:8:315:-21.1891,0,-51.2127 0/0:9:9,0:9:358:0:0:0,-2.70927,-32.5787 dDocent_Contig_5694 24 . A T 574.143 . AB=0.046875;ABP=117.148;AC=2;AF=0.333333;AN=6;AO=3;CIGAR=1M1X3M1X;DP=89;DPB=96.5;DPRA=0;EPP=9.52472;EPPR=92.0407;GTI=0;LEN=1;MEANALT=4;MQM=60;MQMR=60;NS=3;NUMALT=4;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=114;QR=1619;RO=41;RPL=0;RPP=9.52472;RPPR=92.0407;RPR=3;RUN=1;SAF=3;SAP=9.52472;SAR=0;SRF=41;SRP=92.0407;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|1:36:16,9,4,5,2:16:639:9,4,5,2:361,164,189,77:-24.9326,0,-49.9274,-16.2092,-39.0979,-67.6405,-14.2642,-37.1501,-53.3572,-65.3898,-23.4282,-46.3155,-62.5232,-60.5739,-75.4591 0|1:25:12,9,4,0,0:12:466:9,4,0,0:350,162,0,0:-25.1383,0,-35.5654,-15.3874,-24.9122,-52.47,-28.7506,-38.2747,-53.6741,-67.0351,-28.7506,-38.2747,-53.6741,-67.0351,-67.0351 0|0:28:13,4,5,5,1:13:514:4,5,5,1:161,202,202,37:-12.7413,-3.38498,-44.4768,0,-29.0259,-40.7912,0,-29.0259,-25.6411,-40.7912,-13.6299,-42.6551,-39.2705,-39.2705,-55.6239 dDocent_Contig_5695 99 . N A 635.564 . AB=0.230769;ABP=11.1951;AC=6;AF=1;AN=6;AO=3;CIGAR=2X;DP=23;DPB=130;DPRA=2.6;EPP=9.52472;EPPR=0;GTI=0;LEN=1;MEANALT=2;MQM=60;MQMR=0;NS=3;NUMALT=2;ODDS=0;PAIRED=1;PAIREDR=0;PAO=42;PQA=1321;PQR=0;PRO=0;QA=87;QR=0;RO=0;RPL=3;RPP=9.52472;RPPR=0;RPR=0;RUN=1;SAF=3;SAP=9.52472;SAR=0;SRF=0;SRP=0;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 1|1:13:0,10,3:0:0:10,3:341,87:-34.5917,-6.92404,-3.91374,-27.6676,0,-26.7645 1|1:5:0,5,0:0:0:5,0:172,0:-15.4665,-1.50515,0,-15.4665,-1.50515,-15.4665 1|1:5:0,5,0:0:0:5,0:167,0:-15.0191,-1.50515,0,-15.0191,-1.50515,-15.0191 dDocent_Contig_5702 120 . A G 1156.71 . AB=0.0666667;ABP=76.4061;AC=4;AF=0.666667;AN=6;AO=3;CIGAR=1X1M;DP=62;DPB=62;DPRA=1.32353;EPP=9.52472;EPPR=37.7539;GTI=0;LEN=1;MEANALT=2;MQM=60;MQMR=60;NS=3;NUMALT=2;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=108;QR=569;RO=16;RPL=0;RPP=9.52472;RPPR=37.7539;RPR=3;RUN=1;SAF=0;SAP=9.52472;SAR=3;SRF=0;SRP=37.7539;SRR=16;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 1|1:17:0,17,0:0:0:17,0:575,0:-52.0689,-5.11751,0,-52.0689,-5.11751,-52.0689 0|1:24:7,15,2:7:251:15,2:503,72:-38.609,0,-15.9557,-34.8385,-14.596,-54.7161 0|1:21:9,11,1:9:318:11,1:384,36:-28.5161,0,-22.5813,-28.2871,-22.9545,-53.8865 dDocent_Contig_5704 24 . T G 80.0489 . AB=0.0987654;ABP=229.54;AC=1;AF=0.166667;AN=6;AO=22;CIGAR=1X;DP=370;DPB=370;DPRA=0;EPP=50.7827;EPPR=752.168;GTI=0;LEN=1;MEANALT=1.66667;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=0.942029;PAO=0;PQA=0;PQR=0;PRO=0;QA=889;QR=13820;RO=345;RPL=0;RPP=50.7827;RPPR=752.168;RPR=22;RUN=1;SAF=22;SAP=50.7827;SAR=0;SRF=345;SRP=752.168;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:162:146,16:146:5867:16:644:-9.52777,0,-479.029 0/0:94:89,4:89:3555:4:163:0,-13.3463,-304.922 0/0:114:110,2:110:4398:2:82:0,-26.3377,-387.995 dDocent_Contig_5705 9 . G A 70.2559 . AB=0.103226;ABP=214.96;AC=2;AF=0.333333;AN=6;AO=17;CIGAR=2X;DP=207;DPB=207;DPRA=0;EPP=39.9253;EPPR=415.59;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=6.93889e-18;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=663;QR=7215;RO=190;RPL=0;RPP=39.9253;RPPR=415.59;RPR=17;RUN=1;SAF=17;SAP=39.9253;SAR=0;SRF=190;SRP=415.59;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|1:113:101,12:101:3838:12:468:-8.45351,0,-311.52 0|1:42:38,4:38:1432:4:157:-1.86524,0,-116.521 0|0:52:51,1:51:1945:1:38:0,-11.8563,-171.498 dDocent_Contig_5706 21 . A C 2807.49 . AB=0.58125;ABP=12.1848;AC=3;AF=0.5;AN=6;AO=93;CIGAR=1X;DP=160;DPB=160;DPRA=0;EPP=204.957;EPPR=148.499;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=3707;QR=2647;RO=67;RPL=0;RPP=204.957;RPPR=148.499;RPR=93;RUN=1;SAF=93;SAP=204.957;SAR=0;SRF=67;SRP=148.499;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:75:37,38:37:1460:38:1528:-115.183,0,-109.075 0/1:30:5,25:5:199:25:978:-79.2853,0,-9.25708 0/1:55:25,30:25:988:30:1201:-91.8034,0,-72.6588 dDocent_Contig_5708 106 . N T 325.069 . AB=0;ABP=0;AC=4;AF=1;AN=4;AO=11;CIGAR=2X;DP=11;DPB=11;DPRA=0;EPP=26.8965;EPPR=0;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=0;NS=2;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=351;QR=0;RO=0;RPL=0;RPP=26.8965;RPPR=0;RPR=11;RUN=1;SAF=0;SAP=26.8965;SAR=11;SRF=0;SRP=0;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL .:.:.:.:.:.:.:. 1|1:7:0,7:0:0:7:235:-21.4791,-2.10721,0 1|1:4:0,4:0:0:4:116:-10.7267,-1.20412,0 dDocent_Contig_5709 28 . C T 1209.95 . AB=0.272727;ABP=27.6861;AC=1;AF=0.166667;AN=6;AO=15;CIGAR=1M1X1M;DP=114;DPB=99;DPRA=0;EPP=35.5824;EPPR=120.27;GTI=0;LEN=1;MEANALT=2;MQM=60;MQMR=60;NS=3;NUMALT=2;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=571;QR=2084;RO=54;RPL=0;RPP=35.5824;RPPR=120.27;RPR=15;RUN=1;SAF=15;SAP=35.5824;SAR=0;SRF=54;SRP=120.27;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|0:59:32,27,0:32:1227:27,0:1013,0:-73.7115,0,-92.9515,-83.3445,-101.079,-184.045 0|1:20:5,8,7:5:193:8,7:313,270:-30.5555,-6.32246,-19.7638,-9.89094,0,-23.6312 0|0:35:17,10,8:17:664:10,8:338,301:-22.2503,0,-51.5869,-2.69355,-29.9445,-54.9058 dDocent_Contig_5710 29 . T G 4119.72 . AB=0.292722;ABP=238.862;AC=3;AF=0.5;AN=6;AO=185;CIGAR=1X;DP=632;DPB=632;DPRA=0;EPP=404.733;EPPR=936.743;GTI=0;LEN=1;MEANALT=1.66667;MQM=59.8324;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=0.513514;PAIREDR=0.932558;PAO=0;PQA=0;PQR=0;PRO=0;QA=6699;QR=16373;RO=430;RPL=0;RPP=404.733;RPPR=936.743;RPR=185;RUN=1;SAF=185;SAP=404.733;SAR=0;SRF=430;SRP=936.743;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:423:274,133:274:10477:133:4810:-309.873,0,-819.611 0/1:32:25,7:25:949:7:240:-12.2993,0,-76.086 0/1:177:131,45:131:4947:45:1649:-95.3224,0,-391.892 dDocent_Contig_5711 160 . C T 13688.8 . AB=0;ABP=0;AC=6;AF=1;AN=6;AO=411;CIGAR=1X;DP=429;DPB=429;DPRA=0;EPP=886.821;EPPR=42.0968;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=15924;QR=703;RO=18;RPL=410;RPP=886.821;RPPR=42.0968;RPR=1;RUN=1;SAF=0;SAP=895.485;SAR=411;SRF=0;SRP=42.0968;SRR=18;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 1/1:244:10,234:10:385:234:9157:-788.618,-38.4564,0 1/1:75:3,72:3:115:72:2786:-240.143,-11.8522,0 1/1:110:5,105:5:203:105:3981:-339.643,-14.4602,0 dDocent_Contig_5712 30 . G A 3350.54 . AB=0.814159;ABP=99.881;AC=4;AF=0.666667;AN=6;AO=106;CIGAR=1X;DP=128;DPB=128;DPRA=0;EPP=233.186;EPPR=50.7827;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=4177;QR=866;RO=22;RPL=0;RPP=233.186;RPPR=50.7827;RPR=106;RUN=1;SAF=106;SAP=233.186;SAR=0;SRF=22;SRP=50.7827;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:74:12,62:12:468:62:2438:-197.286,0,-20.1912 1/1:15:1,14:1:41:14:543:-45.1143,-0.420883,0 0/1:39:9,30:9:357:30:1196:-96.1757,0,-20.7493 dDocent_Contig_5713 58 . G A 1617.38 . AB=0.291139;ABP=92.8103;AC=3;AF=0.5;AN=6;AO=69;CIGAR=1X;DP=237;DPB=237;DPRA=0;EPP=152.842;EPPR=367.818;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=2641;QR=6540;RO=168;RPL=69;RPP=152.842;RPPR=367.818;RPR=0;RUN=1;SAF=69;SAP=152.842;SAR=0;SRF=168;SRP=367.818;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:134:85,49:85:3309:49:1887:-129.711,0,-257.55 0/1:28:19,9:19:759:9:351:-23.5211,0,-60.2052 0/1:75:64,11:64:2472:11:403:-14.0288,0,-200.058 dDocent_Contig_5715 8 . T A 497.456 . AB=0.102564;ABP=56.5176;AC=0;AF=0;AN=6;AO=4;CIGAR=1X3M3X;DP=60;DPB=60;DPRA=9.75;EPP=11.6962;EPPR=79.0118;GTI=0;LEN=1;MEANALT=3;MQM=28.5;MQMR=60;NS=3;NUMALT=2;ODDS=0;PAIRED=0;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=154;QR=1358;RO=35;RPL=0;RPP=11.6962;RPPR=79.0118;RPR=4;RUN=1;SAF=4;SAP=11.6962;SAR=0;SRF=35;SRP=79.0118;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|0:39:25,4,9:25:965:4,9:154,367:-22.8379,-21.6482,-99.6854,0,-70.6041,-76.6297 0|0:17:10,0,7:10:393:0,7:0,271:-19.635,-22.6453,-54.9747,0,-32.7186,-30.6113 0|0:4:0,0,3:0:0:0,3:0,120:-10.7952,-10.7952,-10.7952,-0.90309,-0.90309,0 dDocent_Contig_5716 16 . T G 5763.77 . AB=0.757282;ABP=121.45;AC=4;AF=0.666667;AN=6;AO=178;CIGAR=1X;DP=229;DPB=229;DPRA=0;EPP=389.532;EPPR=113.755;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=7173;QR=2042;RO=51;RPL=0;RPP=389.532;RPPR=113.755;RPR=178;RUN=1;SAF=178;SAP=389.532;SAR=0;SRF=51;SRP=113.755;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:169:41,128:41:1638:128:5162:-413.552,0,-96.7762 1/1:23:1,22:1:41:22:884:-75.7737,-2.82912,0 0/1:37:9,28:9:363:28:1127:-90.574,0,-21.8962 dDocent_Contig_5717 94 . A G 131.808 . AB=0.219512;ABP=31.0276;AC=2;AF=0.333333;AN=6;AO=11;CIGAR=1X;DP=64;DPB=64;DPRA=0;EPP=26.8965;EPPR=118.098;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=385;QR=1835;RO=53;RPL=11;RPP=26.8965;RPPR=118.098;RPR=0;RUN=1;SAF=11;SAP=26.8965;SAR=0;SRF=53;SRP=118.098;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:30:23,7:23:807:7:245:-13.3603,0,-63.9195 0/0:23:21,2:21:716:2:70:0,-0.276363,-58.108 0/1:11:9,2:9:312:2:70:-3.33607,0,-25.1033 dDocent_Contig_5718 19 . T C 4786.44 . AB=0.840909;ABP=180.676;AC=3;AF=0.5;AN=6;AO=148;CIGAR=1X;DP=176;DPB=176;DPRA=0;EPP=324.388;EPPR=63.8115;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=5944;QR=1124;RO=28;RPL=0;RPP=324.388;RPPR=63.8115;RPR=148;RUN=1;SAF=148;SAP=324.388;SAR=0;SRF=28;SRP=63.8115;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:105:20,85:20:801:85:3417:-275.954,0,-40.7939 0/1:12:1,11:1:40:11:449:-37.1535,0,-0.383319 0/1:59:7,52:7:283:52:2078:-169.44,0,-8.08223 dDocent_Contig_5719 9 . G A 451.688 . AB=0.243697;ABP=70.9099;AC=2;AF=0.333333;AN=6;AO=30;CIGAR=2X1M1X;DP=184;DPB=184;DPRA=0;EPP=68.1545;EPPR=330.903;GTI=0;LEN=1;MEANALT=1.66667;MQM=38.9667;MQMR=59.4437;NS=3;NUMALT=1;ODDS=0;PAIRED=0.8;PAIREDR=0.913907;PAO=0;PQA=0;PQR=0;PRO=0;QA=1185;QR=5774;RO=151;RPL=0;RPP=68.1545;RPPR=330.903;RPR=30;RUN=1;SAF=30;SAP=68.1545;SAR=0;SRF=151;SRP=330.903;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|1:66:47,18:47:1797:18:711:-37.4093,0,-141.549 0|0:65:64,1:64:2454:1:39:0,-15.7308,-217.224 0|1:53:40,11:40:1523:11:435:-11.2824,0,-120.958 dDocent_Contig_5720 30 . C T 134.375 . AB=0.195122;ABP=36.112;AC=2;AF=0.333333;AN=6;AO=8;CIGAR=1X;DP=54;DPB=54;DPRA=1.57692;EPP=20.3821;EPPR=102.898;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=306;QR=1836;RO=46;RPL=0;RPP=20.3821;RPPR=102.898;RPR=8;RUN=1;SAF=8;SAP=20.3821;SAR=0;SRF=46;SRP=102.898;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:13:13,0:13:519:0:0:0,-3.91339,-47.0539 0/1:22:20,2:20:796:2:77:-0.68554,0,-65.3375 0/1:19:13,6:13:521:6:229:-15.2545,0,-41.518 dDocent_Contig_5721 34 . G A 1412.79 . AB=0.232082;ABP=185.688;AC=3;AF=0.5;AN=6;AO=68;CIGAR=1X;DP=293;DPB=293;DPRA=0;EPP=150.67;EPPR=491.592;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=1.38778e-17;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=2601;QR=8787;RO=225;RPL=0;RPP=150.67;RPPR=491.592;RPR=68;RUN=1;SAF=68;SAP=150.67;SAR=0;SRF=225;SRP=491.592;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:134:100,34:100:3931:34:1262:-73.5015,0,-313.486 0/1:80:67,13:67:2608:13:502:-21.4368,0,-210.797 0/1:79:58,21:58:2248:21:837:-51.8633,0,-178.727 dDocent_Contig_5722 38 . T C 4096.89 . AB=0.189757;ABP=998.717;AC=3;AF=0.5;AN=6;AO=226;CIGAR=1X;DP=1191;DPB=1191;DPRA=0;EPP=493.763;EPPR=2094.14;GTI=0;LEN=1;MEANALT=1.66667;MQM=59.969;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=0.995575;PAIREDR=0.951194;PAO=0;PQA=0;PQR=0;PRO=0;QA=8591;QR=35126;RO=963;RPL=0;RPP=493.763;RPPR=2094.14;RPR=226;RUN=1;SAF=226;SAP=493.763;SAR=0;SRF=963;SRP=2094.14;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:516:414,101:414:15246:101:3849:-191.344,0,-1216.47 0/1:332:269,63:269:9751:63:2387:-115.088,0,-777.445 0/1:343:280,62:280:10129:62:2355:-108.78,0,-808.067 dDocent_Contig_5723 118 . A G 59.4779 . AB=0.166667;ABP=31.9633;AC=1;AF=0.166667;AN=6;AO=5;CIGAR=1X;DP=58;DPB=58;DPRA=2.14286;EPP=13.8677;EPPR=115.927;GTI=0;LEN=1;MEANALT=2;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=180;QR=1818;RO=52;RPL=0;RPP=13.8677;RPPR=115.927;RPR=5;RUN=1;SAF=0;SAP=13.8677;SAR=5;SRF=0;SRP=115.927;SRR=52;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:30:24,5:24:835:5:180:-7.47067,0,-66.3879 0/0:10:10,0:10:350:0:0:0,-3.0103,-31.8375 0/0:18:18,0:18:633:0:0:0,-5.41854,-57.2982 dDocent_Contig_5724 165 . G T 46.6286 . AB=0.2;ABP=14.7363;AC=1;AF=0.166667;AN=6;AO=3;CIGAR=1X;DP=42;DPB=42;DPRA=1.11111;EPP=9.52472;EPPR=87.6977;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=8.67362e-19;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=118;QR=1555;RO=39;RPL=3;RPP=9.52472;RPPR=87.6977;RPR=0;RUN=1;SAF=0;SAP=9.52472;SAR=3;SRF=0;SRP=87.6977;SRR=39;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:16:16,0:16:643:0:0:0,-4.81648,-58.2048 0/0:11:11,0:11:434:0:0:0,-3.31133,-39.4128 0/1:15:12,3:12:478:3:118:-6.48675,0,-38.8557 dDocent_Contig_5725 26 . T G 109.552 . AB=0.155556;ABP=49.3833;AC=1;AF=0.166667;AN=6;AO=8;CIGAR=1X;DP=96;DPB=96;DPRA=2.32353;EPP=20.3821;EPPR=194.1;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=55.3182;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=0.886364;PAO=0;PQA=0;PQR=0;PRO=0;QA=326;QR=3549;RO=88;RPL=0;RPP=20.3821;RPPR=194.1;RPR=8;RUN=1;SAF=8;SAP=20.3821;SAR=0;SRF=88;SRP=194.1;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:45:38,7:38:1545:7:285:-12.4781,0,-117.004 0/0:17:17,0:17:680:0:0:0,-5.11751,-59.354 0/0:34:33,1:33:1324:1:41:0,-6.14045,-106.487 dDocent_Contig_5726 7 . A G 142.596 . AB=0.259259;ABP=16.6021;AC=1;AF=0.166667;AN=6;AO=12;CIGAR=1X;DP=108;DPB=108;DPRA=0;EPP=29.068;EPPR=211.472;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=3.46945e-18;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=433;QR=3637;RO=96;RPL=0;RPP=29.068;RPPR=211.472;RPR=12;RUN=1;SAF=12;SAP=29.068;SAR=0;SRF=96;SRP=211.472;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:56:53,3:53:2021:3:103:0,-7.24978,-172.517 0/1:27:20,7:20:745:7:265:-16.0834,0,-59.2503 0/0:25:23,2:23:871:2:65:0,-1.35418,-72.5377 dDocent_Contig_5727 81 . G A 69.4424 . AB=0.162791;ABP=45.4803;AC=2;AF=0.333333;AN=6;AO=7;CIGAR=1X;DP=61;DPB=61;DPRA=1.19444;EPP=18.2106;EPPR=120.27;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=249;QR=1877;RO=54;RPL=7;RPP=18.2106;RPPR=120.27;RPR=0;RUN=1;SAF=7;SAP=18.2106;SAR=0;SRF=54;SRP=120.27;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:29:26,3:26:896:3:109:-1.43813,0,-72.2249 0/1:14:10,4:10:359:4:140:-8.73016,0,-28.4378 0/0:18:18,0:18:622:0:0:0,-5.41854,-56.3047 dDocent_Contig_5728 45 . T C 1150.22 . AB=0.194954;ABP=355.406;AC=2;AF=0.333333;AN=6;AO=85;CIGAR=2M1D3M1X2M2X;DP=436;DPB=404.455;DPRA=0;EPP=187.585;EPPR=122.441;GTI=0;LEN=1;MEANALT=25.3333;MQM=19.2824;MQMR=60;NS=3;NUMALT=6;ODDS=1.11022e-16;PAIRED=0;PAIREDR=0.836364;PAO=0;PQA=0;PQR=0;PRO=0;QA=3354;QR=2138;RO=55;RPL=0;RPP=187.585;RPPR=122.441;RPR=85;RUN=1;SAF=85;SAP=187.585;SAR=0;SRF=55;SRP=122.441;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 1|0:190:19,2,24,42,21,9,11:19:729:2,24,42,21,9,11:32,652,1661,808,336,433:-62.0944,-66.0697,-125.31,-22.1274,-80.2265,-74.7458,-4.92102,-63.0196,-19.0842,-52.1199,-3.04764,-61.1484,-17.2061,0,-56.5711,-41.6071,-99.706,-55.7645,-38.5578,-36.6858,-98.741,-33.3278,-91.427,-47.4853,-30.2785,-28.4064,-66.965,-89.86 0|0:109:15,0,7,16,13,8,11:15:588:0,7,16,13,8,11:0,169,625,440,249,399:-29.7978,-34.3132,-82.6829,-23.1037,-71.4735,-69.3663,-10.6104,-58.98,-47.7731,-54.1635,0,-48.3729,-37.1641,-24.6718,-44.4595,-15.8503,-64.2213,-53.0125,-40.52,-29.911,-61.813,-2.1542,-50.5271,-39.318,-26.8251,-16.2155,-32.065,-47.2158 0|1:137:21,7,8,27,12,4,11:21:821:7,8,27,12,4,11:139,134,1068,427,151,430:-28.5525,-26.3436,-91.7541,-27.3364,-86.3242,-92.4454,0,-58.9906,-59.984,-59.3899,-1.78052,-60.7714,-61.764,-34.429,-65.6891,-23.0351,-82.0235,-83.0159,-55.6801,-57.4632,-89.3496,-0.125154,-59.1163,-60.1088,-32.7729,-34.5549,-55.8082,-64.3353 dDocent_Contig_5731 15 . C A 164.671 . AB=0.132075;ABP=127.645;AC=1;AF=0.166667;AN=6;AO=17;CIGAR=1X;DP=370;DPB=370;DPRA=0.406863;EPP=39.9253;EPPR=769.54;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=6.93889e-18;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=674;QR=14142;RO=353;RPL=0;RPP=39.9253;RPPR=769.54;RPR=17;RUN=1;SAF=17;SAP=39.9253;SAR=0;SRF=353;SRP=769.54;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:204:204,0:204:8217:0:0:0,-61.4101,-739.05 0/0:60:57,3:57:2262:3:120:0,-6.87411,-192.56 0/1:106:92,14:92:3663:14:554:-18.291,0,-297.776 dDocent_Contig_5732 9 . G C 96.8758 . AB=0.153846;ABP=57.1301;AC=2;AF=0.333333;AN=6;AO=8;CIGAR=1X2M1X;DP=61;DPB=61;DPRA=2.88889;EPP=20.3821;EPPR=118.098;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=312;QR=2059;RO=53;RPL=0;RPP=20.3821;RPPR=118.098;RPR=8;RUN=1;SAF=8;SAP=20.3821;SAR=0;SRF=53;SRP=118.098;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|1:36:30,6:30:1169:6:232:-10.4115,0,-94.6655 0|0:9:9,0:9:338:0:0:0,-2.70927,-30.7736 0|1:16:14,2:14:552:2:80:-2.77531,0,-45.2092 dDocent_Contig_5733 18 . T C 39.941 . AB=0.125;ABP=42.0968;AC=1;AF=0.166667;AN=6;AO=4;CIGAR=1X;DP=61;DPB=61;DPRA=2.2069;EPP=11.6962;EPPR=126.784;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=164;QR=2292;RO=57;RPL=0;RPP=11.6962;RPPR=126.784;RPR=4;RUN=1;SAF=4;SAP=11.6962;SAR=0;SRF=57;SRP=126.784;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:32:28,4:28:1131:4:164:-5.51694,0,-92.4363 0/0:13:13,0:13:525:0:0:0,-3.91339,-47.5961 0/0:16:16,0:16:636:0:0:0,-4.81648,-57.5712 dDocent_Contig_5734 11 . C T 1226.58 . AB=0.331034;ABP=38.9669;AC=3;AF=0.5;AN=6;AO=48;CIGAR=1X;DP=145;DPB=145;DPRA=0;EPP=107.241;EPPR=213.643;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=1898;QR=3824;RO=97;RPL=0;RPP=107.241;RPPR=213.643;RPR=48;RUN=1;SAF=48;SAP=107.241;SAR=0;SRF=97;SRP=213.643;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:79:52,27:52:2071:27:1068:-72.6338,0,-162.805 0/1:25:14,11:14:555:11:435:-31.9796,0,-42.7683 0/1:41:31,10:31:1198:10:395:-23.567,0,-95.7634 dDocent_Contig_5736 8 . G A 1742.45 . AB=0.469027;ABP=3.95191;AC=3;AF=0.5;AN=6;AO=53;CIGAR=1X1M1X1M;DP=113;DPB=105.5;DPRA=0;EPP=118.098;EPPR=68.1545;GTI=0;LEN=1;MEANALT=2;MQM=60;MQMR=60;NS=3;NUMALT=2;ODDS=0;PAIRED=0.962264;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=2003;QR=1158;RO=30;RPL=0;RPP=118.098;RPPR=68.1545;RPR=53;RUN=1;SAF=53;SAP=118.098;SAR=0;SRF=30;SRP=68.1545;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 1|0:68:16,29,23:16:615:29,23:1091,825:-101.358,-16.7729,-58.5404,-38.8965,0,-82.4626 1|0:20:1,15,4:1:38:15,4:572,135:-54.4416,-7.78272,-6.39225,-43.8103,0,-45.7226 0|1:25:13,9,3:13:505:9,3:340,108:-23.9688,0,-38.8109,-19.0753,-32.7141,-59.6757 dDocent_Contig_5737 97 . C T 1753.83 . AB=0.705882;ABP=40.564;AC=3;AF=0.5;AN=6;AO=72;CIGAR=1X;DP=102;DPB=102;DPRA=0;EPP=159.356;EPPR=68.1545;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=2341;QR=1034;RO=30;RPL=72;RPP=159.356;RPPR=68.1545;RPR=0;RUN=1;SAF=72;SAP=159.356;SAR=0;SRF=30;SRP=68.1545;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:52:21,31:21:725:31:994:-74.1035,0,-49.9172 0/1:25:5,20:5:174:20:655:-51.7358,0,-8.4762 0/1:25:4,21:4:135:21:692:-55.0665,0,-4.95755 dDocent_Contig_5738 19 . C T 235.807 . AB=0.533333;ABP=3.15506;AC=1;AF=0.166667;AN=6;AO=8;CIGAR=1X;DP=30;DPB=30;DPRA=2;EPP=20.3821;EPPR=50.7827;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=325;QR=874;RO=22;RPL=0;RPP=20.3821;RPPR=50.7827;RPR=8;RUN=1;SAF=8;SAP=20.3821;SAR=0;SRF=22;SRP=50.7827;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:15:7,8:7:281:8:325:-25.1036,0,-21.1456 0/0:8:8,0:8:307:0:0:0,-2.40824,-27.9843 0/0:7:7,0:7:286:0:0:0,-2.10721,-26.1148 dDocent_Contig_5739 32 . C G 92.5618 . AB=0.170732;ABP=41.6201;AC=3;AF=0.5;AN=6;AO=7;CIGAR=1X;DP=41;DPB=41;DPRA=0;EPP=18.2106;EPPR=76.8404;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=282;QR=1343;RO=34;RPL=0;RPP=18.2106;RPPR=76.8404;RPR=7;RUN=1;SAF=7;SAP=18.2106;SAR=0;SRF=34;SRP=76.8404;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:20:18,2:18:724:2:79:-1.47664,0,-59.4647 0/1:12:10,2:10:398:2:81:-4.07337,0,-32.5654 0/1:9:6,3:6:221:3:122:-8.66322,0,-17.5349 dDocent_Contig_5740 20 . A C 2080.78 . AB=0.818182;ABP=51.3749;AC=4;AF=0.666667;AN=6;AO=63;CIGAR=1X;DP=73;DPB=73;DPRA=0;EPP=139.813;EPPR=24.725;GTI=0;LEN=1;MEANALT=1;MQM=59.873;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=2525;QR=389;RO=10;RPL=0;RPP=139.813;RPPR=24.725;RPR=63;RUN=1;SAF=63;SAP=139.813;SAR=0;SRF=10;SRP=24.725;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:41:5,36:5:197:36:1430:-116.605,0,-5.76305 0/1:14:5,9:5:192:9:362:-28.7272,0,-13.4334 1/1:18:0,18:0:0:18:733:-66.2686,-5.41854,0 dDocent_Contig_5741 19 . G A 1278.97 . AB=0.445545;ABP=5.61177;AC=3;AF=0.5;AN=6;AO=45;CIGAR=1X;DP=101;DPB=101;DPRA=0;EPP=100.727;EPPR=124.613;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=1809;QR=2139;RO=56;RPL=0;RPP=100.727;RPPR=124.613;RPR=45;RUN=1;SAF=45;SAP=100.727;SAR=0;SRF=56;SRP=124.613;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:42:22,20:22:830:20:806:-60.2133,0,-62.3507 0/1:22:8,14:8:298:14:558:-43.9392,0,-20.5391 0/1:37:26,11:26:1011:11:445:-29.2676,0,-80.1487 dDocent_Contig_5742 9 . G A 465.332 . AB=0.365385;ABP=11.1951;AC=3;AF=0.5;AN=6;AO=19;CIGAR=1X;DP=52;DPB=52;DPRA=0;EPP=44.2683;EPPR=74.6689;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=0.947368;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=740;QR=1283;RO=33;RPL=0;RPP=44.2683;RPPR=74.6689;RPR=19;RUN=1;SAF=19;SAP=44.2683;SAR=0;SRF=33;SRP=74.6689;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:25:17,8:17:661:8:311:-20.8286,0,-52.3013 0/1:18:11,7:11:428:7:273:-19.5195,0,-33.4568 0/1:9:5,4:5:194:4:156:-11.708,0,-15.1236 dDocent_Contig_5743 19 . G C 5375.16 . AB=0.0402145;ABP=687.921;AC=0;AF=0;AN=6;AO=15;CIGAR=1M2X1M1X3M1X1M1D2M4X4M;DP=373;DPB=372.286;DPRA=0;EPP=35.5824;EPPR=29.068;GTI=0;LEN=1;MEANALT=12.6667;MQM=36;MQMR=60;NS=3;NUMALT=7;ODDS=0;PAIRED=1;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=536;QR=473;RO=12;RPL=0;RPP=35.5824;RPPR=29.068;RPR=15;RUN=1;SAF=15;SAP=35.5824;SAR=0;SRF=12;SRP=29.068;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|0:209:5,1,19,0,9,17,104,30:5:199:1,19,0,9,17,104,30:40,723,0,320,658,3438,1201:-331.513,-329.723,-345.81,-275.454,-288.547,-286.122,-333.019,-346.111,-291.842,-349.406,-309.226,-322.318,-268.049,-325.614,-322.904,-288.581,-301.673,-247.404,-304.969,-281.176,-299.851,-82.5643,-95.657,-41.3894,-98.9525,-75.1626,-54.521,-67.6454,-234.071,-247.163,-192.892,-250.459,-226.666,-206.02,0,-241.428 0|0:49:6,3,9,0,3,1,19,4:6:235:3,9,0,3,1,19,4:117,332,0,108,38,649,158:-52.958,-45.1429,-63.571,-28.1841,-37.8953,-44.8074,-54.7642,-64.4741,-47.5166,-74.0944,-46.7606,-56.4707,-39.5134,-66.0911,-65.1881,-52.1365,-61.8464,-44.889,-71.4668,-63.4636,-71.1658,-7.24185,-16.9518,0,-26.5717,-18.5716,-23.9451,-20.8521,-41.7566,-51.4672,-34.5089,-61.0881,-53.0847,-58.4605,-13.5656,-59.884 0|0:115:1,0,13,7,3,7,49,12:1:39:0,13,7,3,7,49,12:0,513,229,108,257,1627,477:-158.567,-158.868,-162.074,-117.034,-120.24,-116.327,-142.038,-145.245,-103.411,-143.137,-150.863,-154.07,-112.236,-137.241,-153.167,-141.315,-144.521,-102.687,-127.692,-136.517,-142.414,-38.6292,-41.8356,0,-25.0104,-33.8325,-24.2861,-27.0852,-119.59,-122.796,-80.9605,-105.967,-114.792,-105.243,-2.55558,-119.184 dDocent_Contig_5744 29 . G A 2958.09 . AB=0.296675;ABP=143.412;AC=3;AF=0.5;AN=6;AO=116;CIGAR=1X;DP=391;DPB=391;DPRA=0;EPP=254.901;EPPR=600.165;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=4648;QR=10957;RO=275;RPL=0;RPP=254.901;RPPR=600.165;RPR=116;RUN=1;SAF=116;SAP=254.901;SAR=0;SRF=275;SRP=600.165;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:185:124,61:124:4924:61:2448:-164.772,0,-387.369 0/1:83:52,31:52:2072:31:1244:-87.2431,0,-161.677 0/1:123:99,24:99:3961:24:956:-49.3163,0,-319.443 dDocent_Contig_5745 30 . A C 246.306 . AB=0.277778;ABP=18.4519;AC=1;AF=0.166667;AN=6;AO=11;CIGAR=1X;DP=66;DPB=66;DPRA=3.16667;EPP=26.8965;EPPR=122.441;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=447;QR=2181;RO=55;RPL=0;RPP=26.8965;RPPR=122.441;RPR=11;RUN=1;SAF=11;SAP=26.8965;SAR=0;SRF=55;SRP=122.441;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:36:26,10:26:1033:10:407:-26.1535,0,-82.4256 0/0:9:9,0:9:360:0:0:0,-2.70927,-32.7623 0/0:21:20,1:20:788:1:40:0,-2.32595,-67.2377 dDocent_Contig_5747 98 . N T 229.535 . AB=0;ABP=0;AC=6;AF=1;AN=6;AO=10;CIGAR=1X;DP=11;DPB=11;DPRA=0;EPP=24.725;EPPR=0;GTI=0;LEN=1;MEANALT=1.33333;MQM=60;MQMR=0;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=245;QR=0;RO=0;RPL=10;RPP=24.725;RPPR=0;RPR=0;RUN=1;SAF=10;SAP=24.725;SAR=0;SRF=0;SRP=0;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 1/1:3:0,3:0:0:3:78:-7.27932,-0.90309,0 1/1:4:0,3:0:0:3:33:-2.80502,-0.90309,0 1/1:4:0,4:0:0:4:134:-12.3913,-1.20412,0 dDocent_Contig_5748 31 . C T 2976.77 . AB=0.535135;ABP=4.99397;AC=3;AF=0.5;AN=6;AO=99;CIGAR=1X;DP=185;DPB=185;DPRA=0;EPP=217.986;EPPR=189.757;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=3979;QR=3392;RO=86;RPL=0;RPP=217.986;RPPR=189.757;RPR=99;RUN=1;SAF=99;SAP=217.986;SAR=0;SRF=86;SRP=189.757;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:104:46,58:46:1818:58:2317:-177.378,0,-132.515 0/1:41:21,20:21:809:20:808:-60.6933,0,-60.781 0/1:40:19,21:19:765:21:854:-65.1293,0,-57.1287 dDocent_Contig_5750 20 . C T 87.7311 . AB=0.10119;ABP=235.099;AC=1;AF=0.166667;AN=6;AO=35;CIGAR=1X;DP=539;DPB=539;DPRA=0;EPP=79.0118;EPPR=1093.09;GTI=0;LEN=1;MEANALT=1.66667;MQM=60;MQMR=59.9861;NS=3;NUMALT=1;ODDS=0;PAIRED=0.942857;PAIREDR=0.996016;PAO=0;PQA=0;PQR=0;PRO=0;QA=1404;QR=20175;RO=502;RPL=0;RPP=79.0118;RPPR=1093.09;RPR=35;RUN=1;SAF=35;SAP=79.0118;SAR=0;SRF=502;SRP=1093.09;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:166:158,7:158:6368:7:282:0,-24.3259,-547.075 0/0:205:193,11:193:7736:11:446:0,-21.2781,-655.309 0/1:168:151,17:151:6071:17:676:-10.597,0,-495.561 dDocent_Contig_5751 42 . A C 68.4311 . AB=0.114286;ABP=93.4676;AC=1;AF=0.166667;AN=6;AO=8;CIGAR=1X;DP=94;DPB=94;DPRA=5.83333;EPP=20.3821;EPPR=181.172;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=59.3721;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=0.988372;PAO=0;PQA=0;PQR=0;PRO=0;QA=323;QR=3443;RO=86;RPL=0;RPP=20.3821;RPPR=181.172;RPR=8;RUN=1;SAF=8;SAP=20.3821;SAR=0;SRF=86;SRP=189.757;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:70:62,8:62:2474:8:323:-8.36598,0,-201.731 0/0:7:7,0:7:281:0:0:0,-2.10721,-22.5572 0/0:17:17,0:17:688:0:0:0,-5.11751,-62.2493 dDocent_Contig_5753 11 . C T 145.259 . AB=0.304348;ABP=10.6577;AC=1;AF=0.166667;AN=6;AO=9;CIGAR=1X;DP=137;DPB=137;DPRA=1.57576;EPP=22.5536;EPPR=278.787;GTI=0;LEN=1;MEANALT=1.5;MQM=49.5556;MQMR=59.7323;NS=3;NUMALT=1;ODDS=0;PAIRED=0;PAIREDR=0.76378;PAO=0;PQA=0;PQR=0;PRO=0;QA=339;QR=5028;RO=127;RPL=0;RPP=22.5536;RPPR=278.787;RPR=9;RUN=1;SAF=9;SAP=22.5536;SAR=0;SRF=127;SRP=278.787;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:81:78,2:78:3118:2:79:0,-17.14,-273.351 0/0:33:33,0:33:1280:0:0:0,-9.93399,-115.466 0/1:23:16,7:16:630:7:260:-16.3498,0,-50.0536 dDocent_Contig_5754 33 . T C 958.785 . AB=0.416667;ABP=8.07707;AC=3;AF=0.5;AN=6;AO=35;CIGAR=1X;DP=84;DPB=84;DPRA=0;EPP=79.0118;EPPR=109.412;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=1396;QR=1808;RO=49;RPL=0;RPP=79.0118;RPPR=109.412;RPR=35;RUN=1;SAF=35;SAP=79.0118;SAR=0;SRF=49;SRP=109.412;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:35:24,11:24:909:11:447:-30.05,0,-71.5822 0/1:30:16,14:16:560:14:562:-41.8932,0,-41.6927 0/1:19:9,10:9:339:10:387:-29.4581,0,-25.1417 dDocent_Contig_5755 87 . C T 108.929 . AB=0.134021;ABP=115.86;AC=1;AF=0.166667;AN=6;AO=14;CIGAR=1X;DP=276;DPB=276;DPRA=0.801887;EPP=33.4109;EPPR=571.936;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=498;QR=8996;RO=262;RPL=14;RPP=33.4109;RPPR=571.936;RPR=0;RUN=1;SAF=14;SAP=33.4109;SAR=0;SRF=262;SRP=571.936;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:106:106,0:106:3581:0:0:0,-31.9092,-322.51 0/1:97:84,13:84:2931:13:462:-12.7168,0,-234.834 0/0:73:72,1:72:2484:1:36:0,-18.3769,-220.224 dDocent_Contig_5756 98 . N T 70.2696 . AB=0;ABP=0;AC=2;AF=1;AN=2;AO=2;CIGAR=2X;DP=2;DPB=5;DPRA=0;EPP=7.35324;EPPR=0;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=0;NS=1;NUMALT=1;ODDS=5.99146;PAIRED=1;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=74;QR=0;RO=0;RPL=2;RPP=7.35324;RPPR=0;RPR=0;RUN=1;SAF=2;SAP=7.35324;SAR=0;SRF=0;SRP=0;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 1|1:2:0,2:0:0:2:74:-7.02588,-0.60206,0 .:.:.:.:.:.:.:. .:.:.:.:.:.:.:. dDocent_Contig_5757 18 . A C 133.883 . AB=0.153846;ABP=70.66;AC=2;AF=0.333333;AN=6;AO=10;CIGAR=1X;DP=111;DPB=111;DPRA=0.706522;EPP=24.725;EPPR=222.329;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=0;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=397;QR=4017;RO=101;RPL=0;RPP=24.725;RPPR=222.329;RPR=10;RUN=1;SAF=10;SAP=24.725;SAR=0;SRF=101;SRP=222.329;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:46:46,0:46:1821:0:0:0,-13.8474,-164.108 0/1:22:18,4:18:714:4:152:-7.42598,0,-57.9643 0/1:43:37,6:37:1482:6:245:-9.48518,0,-120.683 dDocent_Contig_5758 11 . C A 267.636 . AB=0.292683;ABP=18.3165;AC=3;AF=0.5;AN=6;AO=12;CIGAR=1X;DP=41;DPB=41;DPRA=0;EPP=29.068;EPPR=65.983;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=462;QR=1162;RO=29;RPL=0;RPP=29.068;RPPR=65.983;RPR=12;RUN=1;SAF=12;SAP=29.068;SAR=0;SRF=29;SRP=65.983;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:17:8,9:8:317:9:346:-26.38,0,-23.7792 0/1:11:9,2:9:362:2:76:-3.90293,0,-29.6327 0/1:13:12,1:12:483:1:40:-0.0822893,0,-39.9082 dDocent_Contig_5759 37 . C T 63.3686 . AB=0.181818;ABP=22.3561;AC=1;AF=0.166667;AN=6;AO=4;CIGAR=1X;DP=59;DPB=59;DPRA=1.18919;EPP=11.6962;EPPR=122.441;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=160;QR=2212;RO=55;RPL=0;RPP=11.6962;RPPR=122.441;RPR=4;RUN=1;SAF=4;SAP=11.6962;SAR=0;SRF=55;SRP=122.441;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:25:25,0:25:1013:0:0:0,-7.52575,-91.4626 0/0:12:12,0:12:477:0:0:0,-3.61236,-43.2789 0/1:22:18,4:18:722:4:160:-8.16077,0,-58.6821 dDocent_Contig_5760 98 . N T 1099.58 . AB=0;ABP=0;AC=6;AF=1;AN=6;AO=37;CIGAR=2X;DP=37;DPB=37;DPRA=0;EPP=83.3548;EPPR=0;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=0;NS=3;NUMALT=1;ODDS=1.69407e-21;PAIRED=1;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=1206;QR=0;RO=0;RPL=37;RPP=83.3548;RPPR=0;RPR=0;RUN=1;SAF=37;SAP=83.3548;SAR=0;SRF=0;SRP=0;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 1|1:18:0,18:0:0:18:591:-53.5033,-5.41854,0 1|1:12:0,12:0:0:12:396:-35.9596,-3.61236,0 1|1:7:0,7:0:0:7:219:-20.0183,-2.10721,0 dDocent_Contig_5761 123 . A C 1063.85 . AB=0.175355;ABP=389.327;AC=2;AF=0.333333;AN=6;AO=79;CIGAR=1X;DP=479;DPB=479;DPRA=0;EPP=174.557;EPPR=871.599;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=2799;QR=14116;RO=400;RPL=0;RPP=174.557;RPPR=871.599;RPR=79;RUN=1;SAF=0;SAP=174.557;SAR=79;SRF=0;SRP=871.599;SRR=400;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:300:245,55:245:8703:55:1955:-85.9168,0,-692.956 0/0:57:52,5:52:1749:5:173:0,-1.24937,-141.766 0/1:122:103,19:103:3664:19:671:-23.9912,0,-293.238 dDocent_Contig_5762 8 . A G 52.6594 . AB=0.15625;ABP=35.8538;AC=2;AF=0.333333;AN=6;AO=5;CIGAR=1X;DP=37;DPB=37;DPRA=3.2;EPP=13.8677;EPPR=72.4974;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=49.7812;NS=3;NUMALT=1;ODDS=0;PAIRED=0;PAIREDR=0.75;PAO=0;PQA=0;PQR=0;PRO=0;QA=193;QR=1229;RO=32;RPL=0;RPP=13.8677;RPPR=72.4974;RPR=5;RUN=1;SAF=5;SAP=13.8677;SAR=0;SRF=32;SRP=72.4974;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:25:21,4:21:811:4:154:-6.70771,0,-52.012 0/0:5:5,0:5:194:0:0:0,-1.50515,-17.8328 0/1:7:6,1:6:224:1:39:-1.78935,0,-18.4101 dDocent_Contig_5763 14 . T A 39693.9 . AB=0;ABP=0;AC=6;AF=1;AN=6;AO=1148;CIGAR=1X;DP=1185;DPB=1185;DPRA=0;EPP=2495.86;EPPR=81.1833;GTI=0;LEN=1;MEANALT=1.33333;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=45567;QR=1419;RO=36;RPL=0;RPP=2495.86;RPPR=81.1833;RPR=1148;RUN=1;SAF=1148;SAP=2495.86;SAR=0;SRF=36;SRP=81.1833;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 1/1:610:16,594:16:644:594:23570:-2061.03,-125.335,0 1/1:177:8,168:8:325:168:6633:-567.107,-23.6291,0 1/1:398:12,386:12:450:386:15364:-1340.78,-78.9794,0 dDocent_Contig_5765 34 . A T 819.348 . AB=0.422535;ABP=6.71098;AC=3;AF=0.5;AN=6;AO=30;CIGAR=1X2M1X;DP=71;DPB=71;DPRA=0;EPP=68.1545;EPPR=87.6977;GTI=0;LEN=1;MEANALT=1.33333;MQM=60;MQMR=60;NS=3;NUMALT=2;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=1195;QR=1536;RO=39;RPL=0;RPP=68.1545;RPPR=87.6977;RPR=30;RUN=1;SAF=30;SAP=68.1545;SAR=0;SRF=39;SRP=87.6977;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|1:32:20,0,12:20:792:0,12:0,478:-33.7388,-39.7594,-104.942,0,-65.5799,-61.9675 0|1:23:14,0,9:14:544:0,9:0,356:-25.4786,-29.693,-74.3884,0,-45.0877,-42.3785 0|1:16:5,2,9:5:200:2,9:80,361:-28.2403,-23.1557,-39.0282,0,-9.88504,-13.7657 dDocent_Contig_5766 8 . G A 40030.5 . AB=0;ABP=0;AC=6;AF=1;AN=6;AO=1240;CIGAR=1X;DP=1307;DPB=1307;DPRA=0;EPP=2541.56;EPPR=133.299;GTI=0;LEN=1;MEANALT=1.66667;MQM=56.9726;MQMR=59.8;NS=3;NUMALT=1;ODDS=0;PAIRED=0.554839;PAIREDR=0.766667;PAO=0;PQA=0;PQR=0;PRO=0;QA=47195;QR=2276;RO=60;RPL=0;RPP=2695.64;RPPR=133.299;RPR=1240;RUN=1;SAF=1222;SAP=2541.56;SAR=18;SRF=60;SRP=133.299;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 1/1:520:23,493:23:883:493:18852:-1599.33,-75.9258,0 1/1:387:27,360:27:1006:360:13631:-1126.55,-25.6498,0 1/1:400:10,387:10:387:387:14712:-1276.57,-84.7532,0 dDocent_Contig_5767 12 . T C 577.233 . AB=0.333333;ABP=21.1059;AC=2;AF=0.333333;AN=6;AO=32;CIGAR=1X;DP=312;DPB=312;DPRA=0;EPP=72.4974;EPPR=611.023;GTI=0;LEN=1;MEANALT=1;MQM=59.5;MQMR=59.9286;NS=3;NUMALT=1;ODDS=6.93889e-18;PAIRED=0;PAIREDR=0.903571;PAO=0;PQA=0;PQR=0;PRO=0;QA=1189;QR=10797;RO=280;RPL=0;RPP=72.4974;RPPR=611.023;RPR=32;RUN=1;SAF=32;SAP=72.4974;SAR=0;SRF=280;SRP=611.023;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:41:25,16:25:949:16:591:-41.1604,0,-73.372 0/0:237:230,7:230:8860:7:265:0,-47.1326,-772.557 0/1:34:25,9:25:988:9:333:-20.0857,0,-78.9875 dDocent_Contig_5768 39 . G A 392.139 . AB=0.05;ABP=143.722;AC=1;AF=0.166667;AN=6;AO=4;CIGAR=1X4M1X9M;DP=230;DPB=226.333;DPRA=0.761905;EPP=11.6962;EPPR=361.504;GTI=0;LEN=1;MEANALT=5;MQM=60;MQMR=59.659;NS=3;NUMALT=5;ODDS=0;PAIRED=1;PAIREDR=0.988439;PAO=0;PQA=0;PQR=0;PRO=0;QA=141;QR=6824;RO=173;RPL=0;RPP=11.6962;RPPR=361.504;RPR=4;RUN=1;SAF=4;SAP=11.6962;SAR=0;SRF=173;SRP=378.675;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|0:105:95,0,0,0,3,0:95:3733:0,0,0,3,0:0,0,0,120,0:0,-28.5978,-335.668,-28.5978,-335.668,-335.668,-28.5978,-335.668,-335.668,-335.668,-24.979,-331.993,-331.993,-331.993,-331.09,-28.5978,-335.668,-335.668,-335.668,-331.993,-335.668 0|1:45:30,5,0,0,5,2:30:1188:5,0,0,5,2:186,0,0,188,78:-6.22889,0,-96.3243,-15.2598,-97.8294,-113.051,-15.2598,-97.8294,-113.051,-113.051,-9.55536,-92.0875,-107.306,-107.306,-105.801,-8.83339,-91.4163,-106.638,-106.638,-100.894,-106.036 0|0:80:48,6,4,5,0,16:48:1903:6,4,5,0,16:244,141,161,0,620:-36.5079,-30.82,-185.622,-39.4796,-175.951,-194.876,-43.2229,-179.679,-188.33,-198.301,-50.9573,-187.429,-196.08,-199.806,-207.557,0,-136.498,-145.15,-148.879,-156.627,-151.81 dDocent_Contig_5769 18 . A G 43.213 . AB=0.133333;ABP=38.0434;AC=1;AF=0.166667;AN=6;AO=6;CIGAR=1X;DP=73;DPB=73;DPRA=2.10714;EPP=16.0391;EPPR=148.499;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=243;QR=2701;RO=67;RPL=0;RPP=16.0391;RPPR=148.499;RPR=6;RUN=1;SAF=6;SAP=16.0391;SAR=0;SRF=67;SRP=148.499;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:30:26,4:26:1051:4:161:-5.844,0,-85.8471 0/0:14:14,0:14:571:0:0:0,-4.21442,-51.7319 0/0:29:27,2:27:1079:2:82:0,-0.950192,-89.6172 dDocent_Contig_5770 17 . A G 793.953 . AB=0.270492;ABP=58.8278;AC=2;AF=0.333333;AN=6;AO=39;CIGAR=1X;DP=195;DPB=195;DPRA=0;EPP=87.6977;EPPR=341.76;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=1548;QR=6219;RO=156;RPL=0;RPP=87.6977;RPPR=341.76;RPR=39;RUN=1;SAF=39;SAP=87.6977;SAR=0;SRF=156;SRP=341.76;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:101:72,29:72:2875:29:1161:-74.3642,0,-228.445 0/1:21:17,4:17:663:4:161:-8.55385,0,-53.6709 0/0:73:67,6:67:2681:6:226:0,-1.27538,-220.716 dDocent_Contig_5771 12 . T A 334.658 . AB=0.333333;ABP=13.1438;AC=3;AF=0.5;AN=6;AO=14;CIGAR=1X;DP=42;DPB=42;DPRA=0;EPP=33.4109;EPPR=63.8115;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=0.5;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=561;QR=1104;RO=28;RPL=0;RPP=33.4109;RPPR=63.8115;RPR=14;RUN=1;SAF=14;SAP=33.4109;SAR=0;SRF=28;SRP=63.8115;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:22:16,6:16:627:6:243:-15.6255,0,-50.1438 0/1:12:7,5:7:277:5:199:-14.6764,0,-21.6878 0/1:8:5,3:5:200:3:119:-8.68677,0,-15.9715 dDocent_Contig_5772 107 . N G 84.1112 . AB=0;ABP=0;AC=2;AF=0.5;AN=4;AO=3;CIGAR=1X;DP=4;DPB=4;DPRA=3;EPP=9.52472;EPPR=0;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=0;NS=2;NUMALT=1;ODDS=0;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=85;QR=0;RO=0;RPL=0;RPP=9.52472;RPPR=0;RPR=3;RUN=1;SAF=0;SAP=9.52472;SAR=3;SRF=0;SRP=0;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:1:0,0:0:0:0:0:0,0,0 ./.:.:.:.:.:.:.:. 1/1:3:0,3:0:0:3:85:-7.93237,-0.90309,0 dDocent_Contig_5773 12 . G T 62.5611 . AB=0.15;ABP=45.5712;AC=2;AF=0.333333;AN=6;AO=9;CIGAR=1X;DP=91;DPB=91;DPRA=0;EPP=22.5536;EPPR=181.071;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=351;QR=3192;RO=82;RPL=0;RPP=22.5536;RPPR=181.071;RPR=9;RUN=1;SAF=9;SAP=22.5536;SAR=0;SRF=82;SRP=181.071;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:51:48,3:48:1876:3:117:0,-4.44232,-158.159 0/1:18:15,3:15:582:3:116:-5.39848,0,-47.3023 0/1:22:19,3:19:734:3:118:-4.37985,0,-59.765 dDocent_Contig_5774 92 . A G 61.4738 . AB=0;ABP=0;AC=2;AF=1;AN=2;AO=2;CIGAR=1X2M1X2M3I4X;DP=2;DPB=2.6;DPRA=0;EPP=7.35324;EPPR=0;GTI=0;LEN=1;MEANALT=1;MQM=36;MQMR=0;NS=1;NUMALT=1;ODDS=5.99146;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=70;QR=0;RO=0;RPL=2;RPP=7.35324;RPPR=0;RPR=0;RUN=1;SAF=0;SAP=7.35324;SAR=2;SRF=0;SRP=0;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 1|1:2:0,2:0:0:2:70:-6.14629,-0.60206,0 .:.:.:.:.:.:.:. .:.:.:.:.:.:.:. dDocent_Contig_5775 27 . A G 2377.68 . AB=0.666667;ABP=31.9633;AC=3;AF=0.5;AN=6;AO=80;CIGAR=1X;DP=120;DPB=120;DPRA=0;EPP=176.728;EPPR=89.8692;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=59.225;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=0.975;PAO=0;PQA=0;PQR=0;PRO=0;QA=3095;QR=1607;RO=40;RPL=0;RPP=176.728;RPPR=89.8692;RPR=80;RUN=1;SAF=80;SAP=176.728;SAR=0;SRF=40;SRP=89.8692;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:67:21,46:21:840:46:1765:-138.899,0,-55.7395 0/1:28:14,14:14:565:14:539:-40.4119,0,-41.74 0/1:25:5,20:5:202:20:791:-63.9803,0,-11.0361 dDocent_Contig_5776 24 . G A 3537.74 . AB=0.829787;ABP=91.8097;AC=4;AF=0.666667;AN=6;AO=116;CIGAR=1X;DP=134;DPB=134;DPRA=0;EPP=254.901;EPPR=42.0968;GTI=0;LEN=1;MEANALT=1;MQM=52.3534;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=0.655172;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=4554;QR=721;RO=18;RPL=0;RPP=254.901;RPPR=42.0968;RPR=116;RUN=1;SAF=116;SAP=254.901;SAR=0;SRF=18;SRP=42.0968;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:67:8,59:8:319:59:2306:-175.466,0,-8.90694 1/1:40:2,38:2:81:38:1502:-123.494,-4.35547,0 0/1:27:8,19:8:321:19:746:-58.3375,0,-21.1301 dDocent_Contig_5777 17 . A T 1027.82 . AB=0.807018;ABP=49.6779;AC=4;AF=0.666667;AN=6;AO=67;CIGAR=1X;DP=78;DPB=78;DPRA=0;EPP=148.499;EPPR=26.8965;GTI=0;LEN=1;MEANALT=1;MQM=20.5522;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=0;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=2552;QR=432;RO=11;RPL=0;RPP=148.499;RPPR=26.8965;RPR=67;RUN=1;SAF=67;SAP=148.499;SAR=0;SRF=11;SRP=26.8965;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:43:5,38:5:193:38:1435:-56.1394,0,-4.79395 0/1:14:6,8:6:239:8:297:-10.9365,0,-17.6701 1/1:21:0,21:0:0:21:820:-39.2283,-6.32163,0 dDocent_Contig_5778 32 . A G 159.025 . AB=0.135593;ABP=71.062;AC=2;AF=0.333333;AN=6;AO=8;CIGAR=1X1M1X;DP=59;DPB=59;DPRA=0;EPP=20.3821;EPPR=94.2121;GTI=0;LEN=1;MEANALT=2.33333;MQM=60;MQMR=60;NS=3;NUMALT=3;ODDS=0;PAIRED=0;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=320;QR=1662;RO=42;RPL=0;RPP=20.3821;RPPR=94.2121;RPR=8;RUN=1;SAF=8;SAP=20.3821;SAR=0;SRF=42;SRP=94.2121;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|1:37:29,3,2,3:29:1148:3,2,3:122,82,122:-1.33288,0,-93.5663,-3.29376,-87.7004,-97.1625,0,-84.4053,-87.7004,-93.5663 0|0:10:5,1,3,0:5:200:1,3,0:40,120,0:-8.38009,-6.59016,-22.7643,0,-13.1801,-15.5721,-9.88524,-23.0654,-16.4752,-26.3604 0|1:12:8,4,0,0:8:314:4,0,0:158,0,0:-10.987,0,-25.0113,-13.3952,-26.2155,-39.2169,-13.3952,-26.2155,-39.2169,-39.2169 dDocent_Contig_5779 98 . N T 52.2474 . AB=0;ABP=0;AC=2;AF=1;AN=2;AO=2;CIGAR=1X;DP=2;DPB=2;DPRA=0;EPP=7.35324;EPPR=0;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=0;NS=1;NUMALT=1;ODDS=5.99146;PAIRED=1;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=55;QR=0;RO=0;RPL=2;RPP=7.35324;RPPR=0;RPR=0;RUN=1;SAF=2;SAP=7.35324;SAR=0;SRF=0;SRP=0;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 1/1:2:0,2:0:0:2:55:-5.22366,-0.60206,0 ./.:.:.:.:.:.:.:. ./.:.:.:.:.:.:.:. dDocent_Contig_5780 107 . N G 1237.26 . AB=0;ABP=0;AC=6;AF=1;AN=6;AO=39;CIGAR=1X;DP=39;DPB=39;DPRA=0;EPP=87.6977;EPPR=0;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=0;NS=3;NUMALT=1;ODDS=1.69407e-21;PAIRED=1;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=1357;QR=0;RO=0;RPL=0;RPP=87.6977;RPPR=0;RPR=39;RUN=1;SAF=0;SAP=87.6977;SAR=39;SRF=0;SRP=0;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 1/1:21:0,21:0:0:21:731:-66.1117,-6.32163,0 1/1:9:0,9:0:0:9:312:-28.4153,-2.70927,0 1/1:9:0,9:0:0:9:314:-28.597,-2.70927,0 dDocent_Contig_5781 209 . N G 303.267 . AB=0;ABP=0;AC=4;AF=1;AN=4;AO=8;CIGAR=1X;DP=8;DPB=8;DPRA=0;EPP=20.3821;EPPR=0;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=0;NS=2;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=325;QR=0;RO=0;RPL=8;RPP=20.3821;RPPR=0;RPR=0;RUN=1;SAF=0;SAP=20.3821;SAR=8;SRF=0;SRP=0;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 1/1:4:0,4:0:0:4:162:-14.967,-1.20412,0 1/1:4:0,4:0:0:4:163:-15.0584,-1.20412,0 ./.:.:.:.:.:.:.:. dDocent_Contig_5782 65 . C T 1680.75 . AB=0.594059;ABP=10.7717;AC=3;AF=0.5;AN=6;AO=60;CIGAR=1X;DP=101;DPB=101;DPRA=0;EPP=133.299;EPPR=92.0407;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=2240;QR=1546;RO=41;RPL=60;RPP=133.299;RPPR=92.0407;RPR=0;RUN=1;SAF=60;SAP=133.299;SAR=0;SRF=41;SRP=92.0407;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:52:30,22:30:1144:22:849:-61.0783,0,-87.6046 0/1:11:1,10:1:39:10:375:-30.7872,0,-0.585234 0/1:38:10,28:10:363:28:1016:-80.3125,0,-21.5757 dDocent_Contig_5783 21 . T G 463.082 . AB=0.12766;ABP=399.189;AC=3;AF=0.5;AN=6;AO=42;CIGAR=1X;DP=329;DPB=329;DPRA=0;EPP=94.2121;EPPR=626.223;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=1665;QR=11444;RO=287;RPL=0;RPP=94.2121;RPPR=626.223;RPR=42;RUN=1;SAF=42;SAP=94.2121;SAR=0;SRF=287;SRP=626.223;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:159:144,15:144:5749:15:582:-4.84961,0,-469.36 0/1:86:74,12:74:2945:12:478:-17.479,0,-239.263 0/1:84:69,15:69:2750:15:605:-29.5022,0,-222.32 dDocent_Contig_5784 31 . G A 1040.68 . AB=0.192029;ABP=230.385;AC=3;AF=0.5;AN=6;AO=53;CIGAR=1X;DP=276;DPB=276;DPRA=0;EPP=118.098;EPPR=487.249;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=2130;QR=8812;RO=223;RPL=0;RPP=118.098;RPPR=487.249;RPR=53;RUN=1;SAF=53;SAP=118.098;SAR=0;SRF=223;SRP=487.249;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:197:161,36:161:6373:36:1447:-71.1742,0,-514.004 0/1:21:13,8:13:479:8:316:-22.4817,0,-37.1118 0/1:58:49,9:49:1960:9:367:-15.9355,0,-159.12 dDocent_Contig_5785 13 . C T 1225.31 . AB=0.318182;ABP=47.2294;AC=3;AF=0.5;AN=6;AO=49;CIGAR=1X1M;DP=154;DPB=154;DPRA=0;EPP=109.412;EPPR=209.3;GTI=0;LEN=1;MEANALT=2;MQM=60;MQMR=60;NS=3;NUMALT=2;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=1902;QR=3738;RO=95;RPL=0;RPP=109.412;RPPR=209.3;RPR=49;RUN=1;SAF=49;SAP=109.412;SAR=0;SRF=95;SRP=209.3;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|1:90:59,8,22:59:2336:8,22:315,874:-54.1979,-46.0449,-235.899,0,-166.352,-185.644 0|1:22:15,0,7:15:580:0,7:0,271:-18.1333,-22.6488,-70.2867,0,-48.0246,-45.9174 0|1:42:21,1,20:21:822:1,20:39,757:-55.7223,-58.8375,-126.127,0,-64.3799,-61.5651 dDocent_Contig_5787 15 . G A 772.91 . AB=0.519231;ABP=3.17734;AC=3;AF=0.5;AN=6;AO=27;CIGAR=1X;DP=52;DPB=52;DPRA=0;EPP=61.6401;EPPR=57.2971;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=1062;QR=987;RO=25;RPL=0;RPP=61.6401;RPPR=57.2971;RPR=27;RUN=1;SAF=27;SAP=61.6401;SAR=0;SRF=25;SRP=57.2971;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:17:11,6:11:437:6:233:-16.2193,0,-34.564 0/1:11:1,10:1:35:10:396:-32.685,0,-0.187299 0/1:24:13,11:13:515:11:433:-32.0945,0,-39.4676 dDocent_Contig_5789 38 . C T 692.03 . AB=0.325581;ABP=25.735;AC=3;AF=0.5;AN=6;AO=28;CIGAR=1X;DP=86;DPB=86;DPRA=0;EPP=63.8115;EPPR=128.956;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=0.178571;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=1106;QR=2256;RO=58;RPL=0;RPP=63.8115;RPPR=128.956;RPR=28;RUN=1;SAF=28;SAP=63.8115;SAR=0;SRF=58;SRP=128.956;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:38:19,19:19:732:19:749:-56.2853,0,-54.7519 0/1:15:11,4:11:420:4:161:-10.36,0,-33.6284 0/1:33:28,5:28:1104:5:196:-8.08052,0,-89.7141 dDocent_Contig_5790 8 . A G 63.5539 . AB=0.190476;ABP=20.4855;AC=1;AF=0.166667;AN=6;AO=8;CIGAR=1X;DP=145;DPB=145;DPRA=0;EPP=20.3821;EPPR=300.502;GTI=0;LEN=1;MEANALT=1;MQM=58.125;MQMR=56.9562;NS=3;NUMALT=1;ODDS=0;PAIRED=0;PAIREDR=0.751825;PAO=0;PQA=0;PQR=0;PRO=0;QA=310;QR=5218;RO=137;RPL=0;RPP=20.3821;RPPR=300.502;RPR=8;RUN=1;SAF=8;SAP=20.3821;SAR=0;SRF=137;SRP=300.502;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:91:88,3:88:3355:3:113:0,-16.8603,-287.181 0/1:21:17,4:17:643:4:157:-8.17929,0,-51.7011 0/0:33:32,1:32:1220:1:40:0,-5.94257,-105.911 dDocent_Contig_5791 48 . T A 229.624 . AB=0.211538;ABP=40.5935;AC=2;AF=0.333333;AN=6;AO=11;CIGAR=1M2D1M1X2M;DP=67;DPB=61.8571;DPRA=0;EPP=26.8965;EPPR=109.412;GTI=0;LEN=1;MEANALT=2.5;MQM=60;MQMR=60;NS=3;NUMALT=3;ODDS=6.93889e-18;PAIRED=0;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=439;QR=1913;RO=49;RPL=0;RPP=26.8965;RPPR=109.412;RPR=11;RUN=1;SAF=11;SAP=26.8965;SAR=0;SRF=49;SRP=109.412;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|1:33:25,5,3,0:25:973:5,3,0:202,122,0:-9.12601,0,-78.4309,-6.58753,-69.8709,-85.6237,-16.6518,-79.936,-86.5268,-96.5914 0|0:15:13,0,0,2:13:503:0,0,2:0,0,81:-3.17028,-7.08367,-48.3853,-7.08367,-48.3853,-48.3853,0,-41.7038,-41.7038,-41.1017 0|1:19:11,6,1,0:11:437:6,1,0:237,41,0:-16.1793,0,-34.1597,-16.105,-32.5809,-51.7806,-19.4907,-35.9659,-52.0816,-55.4664 dDocent_Contig_5792 105 . N A 412.612 . AB=0;ABP=0;AC=6;AF=1;AN=6;AO=13;CIGAR=3X;DP=13;DPB=13;DPRA=0;EPP=31.2394;EPPR=0;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=0;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=442;QR=0;RO=0;RPL=0;RPP=31.2394;RPPR=0;RPR=13;RUN=1;SAF=0;SAP=31.2394;SAR=13;SRF=0;SRP=0;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 1|1:1:0,1:0:0:1:34:-3.39891,-0.30103,0 1|1:7:0,7:0:0:7:243:-22.2089,-2.10721,0 1|1:5:0,5:0:0:5:165:-15.1754,-1.50515,0 dDocent_Contig_5794 48 . C A 2442.09 . AB=0.802632;ABP=63.4687;AC=4;AF=0.666667;AN=6;AO=76;CIGAR=1X;DP=91;DPB=91;DPRA=0;EPP=168.042;EPPR=35.5824;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=2997;QR=595;RO=15;RPL=0;RPP=168.042;RPPR=35.5824;RPR=76;RUN=1;SAF=76;SAP=168.042;SAR=0;SRF=15;SRP=35.5824;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:42:5,37:5:202:37:1486:-121.342,0,-5.91861 1/1:15:0,15:0:0:15:603:-54.6085,-4.51545,0 0/1:34:10,24:10:393:24:908:-71.781,0,-25.4869 dDocent_Contig_5795 8 . A G 296.343 . AB=0.245614;ABP=35.049;AC=1;AF=0.166667;AN=6;AO=14;CIGAR=1X;DP=111;DPB=111;DPRA=2.11111;EPP=33.4109;EPPR=211.472;GTI=0;LEN=1;MEANALT=2;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=0.958333;PAO=0;PQA=0;PQR=0;PRO=0;QA=534;QR=3663;RO=96;RPL=0;RPP=33.4109;RPPR=211.472;RPR=14;RUN=1;SAF=14;SAP=33.4109;SAR=0;SRF=96;SRP=211.472;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:57:42,14:42:1607:14:534:-31.1572,0,-127.65 0/0:27:27,0:27:1022:0:0:0,-8.12781,-92.2874 0/0:27:27,0:27:1034:0:0:0,-8.12781,-93.3676 dDocent_Contig_5796 14 . T C 352.309 . AB=0.111111;ABP=26.6552;AC=0;AF=0;AN=6;AO=2;CIGAR=6M1X13M;DP=44;DPB=44;DPRA=0;EPP=7.35324;EPPR=55.1256;GTI=0;LEN=1;MEANALT=4;MQM=60;MQMR=60;NS=3;NUMALT=4;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=71;QR=927;RO=24;RPL=0;RPP=7.35324;RPPR=55.1256;RPR=2;RUN=1;SAF=2;SAP=7.35324;SAR=0;SRF=24;SRP=55.1256;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|0:17:8,9,0,0,0:8:311:9,0,0,0:341,0,0,0:-25.9283,0,-23.2363,-28.3365,-25.9456,-53.8983,-28.3365,-25.9456,-53.8983,-53.8983,-28.3365,-25.9456,-53.8983,-53.8983,-53.8983 0|0:9:6,3,0,0,0:6:233:3,0,0,0:117,0,0,0:-8.20111,0,-18.6303,-10.0073,-19.5334,-29.1516,-10.0073,-19.5334,-29.1516,-29.1516,-10.0073,-19.5334,-29.1516,-29.1516,-29.1516 0|0:18:10,1,3,2,2:10:383:1,3,2,2:38,117,63,71:-6.62437,-6.51548,-37.6603,0,-28.3403,-30.5544,-4.58469,-32.9037,-26.4006,-35.4181,-3.85319,-32.1802,-25.6762,-30.2403,-34.6949 dDocent_Contig_5797 30 . T A 6235.5 . AB=0.681063;ABP=88.7221;AC=3;AF=0.5;AN=6;AO=205;CIGAR=1X;DP=301;DPB=301;DPRA=0;EPP=448.162;EPPR=211.472;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=1.38778e-17;PAIRED=0.95122;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=7992;QR=3719;RO=96;RPL=0;RPP=448.162;RPPR=211.472;RPR=205;RUN=1;SAF=205;SAP=448.162;SAR=0;SRF=96;SRP=211.472;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:166:57,109:57:2227:109:4274:-334.659,0,-150.639 0/1:54:12,42:12:464:42:1631:-130.77,0,-25.8502 0/1:81:27,54:27:1028:54:2087:-163.644,0,-68.4304 dDocent_Contig_5798 9 . G A 3074.69 . AB=0.259194;ABP=290.607;AC=3;AF=0.5;AN=6;AO=148;CIGAR=1X;DP=571;DPB=571;DPRA=0;EPP=324.388;EPPR=874.287;GTI=0;LEN=1;MEANALT=1.33333;MQM=51.3176;MQMR=57.1069;NS=3;NUMALT=1;ODDS=0;PAIRED=0.891892;PAIREDR=0.900238;PAO=0;PQA=0;PQR=0;PRO=0;QA=5595;QR=16169;RO=421;RPL=0;RPP=324.388;RPPR=917.2;RPR=148;RUN=1;SAF=148;SAP=324.388;SAR=0;SRF=416;SRP=874.287;SRR=5;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:213:154,59:154:5925:59:2204:-131.535,0,-464.258 0/1:176:139,35:139:5318:35:1337:-59.9177,0,-405.402 0/1:182:128,54:128:4926:54:2054:-121.539,0,-382.452 dDocent_Contig_5799 116 . G T 236.261 . AB=0.122857;ABP=435.419;AC=3;AF=0.5;AN=6;AO=43;CIGAR=1X;DP=350;DPB=350;DPRA=0;EPP=96.3836;EPPR=669.652;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=1483;QR=10807;RO=307;RPL=0;RPP=96.3836;RPPR=669.652;RPR=43;RUN=1;SAF=0;SAP=96.3836;SAR=43;SRF=0;SRP=669.652;SRR=307;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:239:209,30:209:7334:30:1030:-21.0595,0,-588.175 0/1:25:22,3:22:782:3:107:-2.45642,0,-63.1775 0/1:86:76,10:76:2691:10:346:-5.58522,0,-216.548 dDocent_Contig_5800 10 . A G 2231.94 . AB=0.306338;ABP=95.5273;AC=3;AF=0.5;AN=6;AO=87;CIGAR=1X;DP=284;DPB=284;DPRA=0;EPP=191.928;EPPR=430.79;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=1.38778e-17;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=3482;QR=7790;RO=197;RPL=0;RPP=191.928;RPPR=430.79;RPR=87;RUN=1;SAF=87;SAP=191.928;SAR=0;SRF=197;SRP=430.79;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:58:39,19:39:1554:19:757:-50.9882,0,-122.643 0/1:64:32,32:32:1265:32:1265:-94.8521,0,-94.8551 0/1:162:126,36:126:4971:36:1460:-82.8765,0,-398.534 dDocent_Contig_5801 16 . C G 826.323 . AB=0.166667;ABP=286.749;AC=2;AF=0.333333;AN=6;AO=57;CIGAR=1X;DP=393;DPB=393;DPRA=0;EPP=126.784;EPPR=732.625;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=0.964286;PAO=0;PQA=0;PQR=0;PRO=0;QA=2261;QR=13423;RO=336;RPL=0;RPP=126.784;RPPR=732.625;RPR=57;RUN=1;SAF=57;SAP=126.784;SAR=0;SRF=336;SRP=732.625;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:178:153,25:153:6132:25:993:-36.087,0,-498.052 0/0:99:91,8:91:3617:8:327:0,-0.00186387,-295.762 0/1:116:92,24:92:3674:24:941:-50.0668,0,-295.749 dDocent_Contig_5803 34 . C T 991.772 . AB=0.308271;ABP=45.4765;AC=3;AF=0.5;AN=6;AO=41;CIGAR=1X;DP=133;DPB=133;DPRA=0;EPP=92.0407;EPPR=202.786;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=6.93889e-18;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=1597;QR=3669;RO=92;RPL=0;RPP=92.0407;RPPR=202.786;RPR=41;RUN=1;SAF=41;SAP=92.0407;SAR=0;SRF=92;SRP=202.786;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:53:39,14:39:1533:14:524:-31.5308,0,-122.25 0/1:45:33,12:33:1326:12:467:-28.8272,0,-106.056 0/1:35:20,15:20:810:15:606:-44.3421,0,-62.6796 dDocent_Contig_5804 30 . G A 952.274 . AB=0.217822;ABP=142.716;AC=2;AF=0.333333;AN=6;AO=46;CIGAR=1X;DP=264;DPB=264;DPRA=0;EPP=102.898;EPPR=476.391;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=1846;QR=8545;RO=218;RPL=0;RPP=102.898;RPPR=476.391;RPR=46;RUN=1;SAF=46;SAP=102.898;SAR=0;SRF=218;SRP=476.391;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:127:104,23:104:4121:23:927:-45.5032,0,-332.639 0/0:62:60,2:60:2290:2:80:0,-11.0723,-198.671 0/1:75:54,21:54:2134:21:839:-53.2471,0,-169.665 dDocent_Contig_5805 107 . N T 95.1727 . AB=0;ABP=0;AC=2;AF=1;AN=2;AO=3;CIGAR=1X;DP=3;DPB=3;DPRA=0;EPP=9.52472;EPPR=0;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=0;NS=1;NUMALT=1;ODDS=6.68461;PAIRED=1;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=102;QR=0;RO=0;RPL=0;RPP=9.52472;RPPR=0;RPR=3;RUN=1;SAF=0;SAP=9.52472;SAR=3;SRF=0;SRP=0;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL ./.:.:.:.:.:.:.:. 1/1:3:0,3:0:0:3:102:-9.51673,-0.90309,0 ./.:.:.:.:.:.:.:. dDocent_Contig_5806 148 . G T 3408.68 . AB=0.466667;ABP=5.9056;AC=3;AF=0.5;AN=6;AO=140;CIGAR=1X;DP=300;DPB=300;DPRA=0;EPP=307.016;EPPR=346.103;GTI=0;LEN=1;MEANALT=1.66667;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=4841;QR=5489;RO=158;RPL=0;RPP=307.016;RPPR=346.103;RPR=140;RUN=1;SAF=0;SAP=307.016;SAR=140;SRF=0;SRP=346.103;SRR=158;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:162:81,80:81:2816:80:2787:-202.529,0,-205.138 0/1:49:24,25:24:856:25:838:-60.9745,0,-62.6111 0/1:89:53,35:53:1817:35:1216:-82.888,0,-136.951 dDocent_Contig_5807 33 . C T 5624.26 . AB=0.696552;ABP=100.322;AC=3;AF=0.5;AN=6;AO=202;CIGAR=1X;DP=290;DPB=290;DPRA=0;EPP=441.648;EPPR=194.1;GTI=0;LEN=1;MEANALT=1;MQM=59.9802;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=0.945545;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=7273;QR=3535;RO=88;RPL=0;RPP=441.648;RPPR=194.1;RPR=202;RUN=1;SAF=202;SAP=441.648;SAR=0;SRF=88;SRP=194.1;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:172:54,118:54:2159:118:4270:-332.654,0,-142.703 0/1:29:7,22:7:280:22:756:-59.6141,0,-16.8393 0/1:89:27,62:27:1096:62:2247:-175.681,0,-72.1322 dDocent_Contig_5808 50 . G T 1370.87 . AB=0.386364;ABP=17.8158;AC=3;AF=0.5;AN=6;AO=51;CIGAR=1X;DP=132;DPB=132;DPRA=0;EPP=113.755;EPPR=178.9;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=2015;QR=3118;RO=81;RPL=51;RPP=113.755;RPPR=178.9;RPR=0;RUN=1;SAF=51;SAP=113.755;SAR=0;SRF=81;SRP=178.9;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:50:37,13:37:1482:13:514:-31.5555,0,-118.578 0/1:52:31,21:31:1142:21:823:-58.7353,0,-87.4059 0/1:30:13,17:13:494:17:678:-52.3195,0,-35.7662 dDocent_Contig_5809 9 . G A 805.397 . AB=0.167019;ABP=458.537;AC=3;AF=0.5;AN=6;AO=79;CIGAR=1X;DP=473;DPB=473;DPRA=0;EPP=174.557;EPPR=858.57;GTI=0;LEN=1;MEANALT=1;MQM=44.2911;MQMR=55.3985;NS=3;NUMALT=1;ODDS=0;PAIRED=0.78481;PAIREDR=0.832487;PAO=0;PQA=0;PQR=0;PRO=0;QA=3024;QR=15089;RO=394;RPL=0;RPP=174.557;RPPR=858.57;RPR=79;RUN=1;SAF=79;SAP=174.557;SAR=0;SRF=394;SRP=858.57;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:309:279,30:279:10688:30:1146:-4.57475,0,-835.334 0/1:54:41,13:41:1567:13:493:-10.388,0,-110.992 0/1:110:74,36:74:2834:36:1385:-71.0994,0,-204.843 dDocent_Contig_5810 25 . C A 601.802 . AB=0;ABP=0;AC=6;AF=1;AN=6;AO=31;CIGAR=1M2I5M1X2M1X;DP=34;DPB=40.2;DPRA=0;EPP=70.3259;EPPR=0;GTI=0;LEN=1;MEANALT=2;MQM=26.7419;MQMR=0;NS=3;NUMALT=1;ODDS=0;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=743;QR=0;RO=0;RPL=0;RPP=70.3259;RPPR=0;RPR=31;RUN=1;SAF=0;SAP=70.3259;SAR=31;SRF=0;SRP=0;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 1|1:16:0,15:0:0:15:379:-30.8022,-4.51545,0 1|1:10:0,9:0:0:9:189:-15.031,-2.70927,0 1|1:8:0,7:0:0:7:175:-13.745,-2.10721,0 dDocent_Contig_5811 12 . T A 261.188 . AB=0.11828;ABP=120.713;AC=1;AF=0.166667;AN=6;AO=11;CIGAR=1M1D2M2X3M;DP=153;DPB=145.111;DPRA=2.38462;EPP=26.8965;EPPR=278.787;GTI=0;LEN=1;MEANALT=3;MQM=60;MQMR=60;NS=3;NUMALT=2;ODDS=1.38778e-17;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=427;QR=4924;RO=127;RPL=0;RPP=26.8965;RPPR=278.787;RPR=11;RUN=1;SAF=11;SAP=26.8965;SAR=0;SRF=127;SRP=278.787;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|1:93:76,11,3:76:2958:11,3:427,117:-12.2085,0,-239.793,-25.4685,-233.487,-267.668 0|0:39:37,0,2:37:1416:0,2:0,70:0,-11.1381,-127.366,-5.09342,-121.672,-121.07 0|0:21:14,0,7:14:550:0,7:0,260:-17.4332,-21.6476,-66.9,0,-45.6307,-43.5235 dDocent_Contig_5812 41 . C T 117.063 . AB=0.138889;ABP=84.5612;AC=1;AF=0.166667;AN=6;AO=12;CIGAR=1X;DP=130;DPB=130;DPRA=1.82143;EPP=29.068;EPPR=259.244;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=6.93889e-18;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=454;QR=4739;RO=118;RPL=0;RPP=29.068;RPPR=259.244;RPR=12;RUN=1;SAF=12;SAP=29.068;SAR=0;SRF=118;SRP=259.244;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:72:62,10:62:2485:10:384:-13.2292,0,-202.118 0/0:30:28,2:28:1113:2:70:0,-2.38639,-93.8025 0/0:28:28,0:28:1141:0:0:0,-8.42884,-102.967 dDocent_Contig_5813 25 . C A 698.269 . AB=0.273585;ABP=50.2091;AC=2;AF=0.333333;AN=6;AO=36;CIGAR=1X;DP=198;DPB=198;DPRA=0;EPP=81.1833;EPPR=354.789;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=1446;QR=6502;RO=162;RPL=0;RPP=81.1833;RPPR=354.789;RPR=36;RUN=1;SAF=36;SAP=81.1833;SAR=0;SRF=162;SRP=354.789;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:80:64,16:64:2555:16:635:-33.3997,0,-206.006 0/1:26:13,13:13:503:13:527:-39.95,0,-37.7812 0/0:92:85,7:85:3444:7:284:0,-1.76076,-284.04 dDocent_Contig_5815 98 . N T 202.29 . AB=0;ABP=0;AC=6;AF=1;AN=6;AO=6;CIGAR=1X;DP=6;DPB=6;DPRA=0;EPP=16.0391;EPPR=0;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=0;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=208;QR=0;RO=0;RPL=6;RPP=16.0391;RPPR=0;RPR=0;RUN=1;SAF=6;SAP=16.0391;SAR=0;SRF=0;SRP=0;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 1/1:4:0,4:0:0:4:139:-12.8527,-1.20412,0 1/1:1:0,1:0:0:1:35:-3.49863,-0.30103,0 1/1:1:0,1:0:0:1:34:-3.39891,-0.30103,0 dDocent_Contig_5816 12 . C T 148.428 . AB=0.428571;ABP=3.63072;AC=1;AF=0.166667;AN=6;AO=8;CIGAR=1X;DP=72;DPB=72;DPRA=1.61765;EPP=20.3821;EPPR=141.985;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=0.875;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=310;QR=2568;RO=64;RPL=0;RPP=20.3821;RPPR=141.985;RPR=8;RUN=1;SAF=8;SAP=20.3821;SAR=0;SRF=64;SRP=141.985;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:41:39,2:39:1568:2:82:0,-4.56255,-133.577 0/0:17:17,0:17:678:0:0:0,-5.11751,-61.3506 0/1:14:8,6:8:322:6:228:-16.6667,0,-25.1339 dDocent_Contig_5817 16 . G A 4549.19 . AB=0.677419;ABP=206.428;AC=3;AF=0.5;AN=6;AO=504;CIGAR=1X;DP=744;DPB=744;DPRA=0;EPP=1097.43;EPPR=521.992;GTI=0;LEN=1;MEANALT=1.33333;MQM=15.4702;MQMR=17.2552;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=19735;QR=9543;RO=239;RPL=0;RPP=1097.43;RPPR=521.992;RPR=504;RUN=1;SAF=504;SAP=1097.43;SAR=0;SRF=239;SRP=521.992;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:199:51,148:51:2030:148:5809:-133.683,0,-6.75192 0/1:338:121,216:121:4843:216:8393:-205.918,0,-95.8247 0/1:207:67,140:67:2670:140:5533:-120.841,0,-33.9724 dDocent_Contig_5824 90 . C T 14456.3 . AB=0.378256;ABP=230.363;AC=3;AF=0.5;AN=6;AO=668;CIGAR=1X;DP=1766;DPB=1766;DPRA=0;EPP=1453.55;EPPR=2380.77;GTI=0;LEN=1;MEANALT=1.66667;MQM=57.6991;MQMR=51.232;NS=3;NUMALT=1;ODDS=1.11022e-16;PAIRED=0.994012;PAIREDR=0.652055;PAO=0;PQA=0;PQR=0;PRO=0;QA=22773;QR=37520;RO=1095;RPL=668;RPP=1453.55;RPPR=2380.77;RPR=0;RUN=1;SAF=668;SAP=1453.55;SAR=0;SRF=1095;SRP=2380.77;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:1144:700,442:700:23970:442:15101:-950.149,0,-1713.51 0/1:168:125,43:125:4293:43:1440:-76.7015,0,-311.561 0/1:454:270,183:270:9257:183:6232:-424.302,0,-665.19 dDocent_Contig_5838 28 . G C 655.739 . AB=0.176768;ABP=182.694;AC=1;AF=0.166667;AN=6;AO=35;CIGAR=1X;DP=306;DPB=306;DPRA=3.66667;EPP=79.0118;EPPR=591.479;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=1405;QR=10680;RO=271;RPL=0;RPP=79.0118;RPPR=591.479;RPR=35;RUN=1;SAF=35;SAP=79.0118;SAR=0;SRF=271;SRP=591.479;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:198:163,35:163:6425:35:1405:-67.0968,0,-518.422 0/0:27:27,0:27:1070:0:0:0,-8.12781,-96.5909 0/0:81:81,0:81:3185:0:0:0,-24.3834,-286.739 dDocent_Contig_5839 22 . T G 324.485 . AB=0.120438;ABP=345.881;AC=1;AF=0.166667;AN=6;AO=36;CIGAR=1X;DP=402;DPB=402;DPRA=5.41176;EPP=81.1833;EPPR=797.769;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=1411;QR=14579;RO=366;RPL=0;RPP=81.1833;RPPR=797.769;RPR=36;RUN=1;SAF=36;SAP=81.1833;SAR=0;SRF=366;SRP=797.769;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:274:241,33:241:9604:33:1291:-33.9714,0,-781.277 0/0:34:34,0:34:1358:0:0:0,-10.235,-122.478 0/0:94:91,3:91:3617:3:120:0,-17.1095,-314.356 dDocent_Contig_5840 155 . A G 2827.83 . AB=0.811024;ABP=109.72;AC=3;AF=0.5;AN=6;AO=103;CIGAR=1X;DP=127;DPB=127;DPRA=0;EPP=226.672;EPPR=55.1256;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=3618;QR=835;RO=24;RPL=0;RPP=226.672;RPPR=55.1256;RPR=103;RUN=1;SAF=0;SAP=226.672;SAR=103;SRF=0;SRP=55.1256;SRR=24;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:96:11,85:11:390:85:2979:-239.443,0,-6.53994 0/1:10:3,7:3:109:7:250:-19.8364,0,-7.15779 0/1:21:10,11:10:336:11:389:-29.0264,0,-24.2434 dDocent_Contig_5841 106 . N C 97.8031 . AB=0;ABP=0;AC=4;AF=1;AN=4;AO=3;CIGAR=2X1M1X;DP=3;DPB=3;DPRA=0;EPP=9.52472;EPPR=0;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=0;NS=2;NUMALT=1;ODDS=0;PAIRED=0.666667;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=98;QR=0;RO=0;RPL=0;RPP=9.52472;RPPR=0;RPR=3;RUN=1;SAF=0;SAP=9.52472;SAR=3;SRF=0;SRP=0;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL .:.:.:.:.:.:.:. 1|1:1:0,1:0:0:1:34:-3.39891,-0.30103,0 1|1:2:0,2:0:0:2:64:-6.07866,-0.60206,0 dDocent_Contig_5842 27 . A G 222.443 . AB=0.0606061;ABP=58.3499;AC=0;AF=0;AN=6;AO=2;CIGAR=2M1X10M;DP=124;DPB=125.308;DPRA=0;EPP=7.35324;EPPR=215.815;GTI=0;LEN=1;MEANALT=2;MQM=60;MQMR=60;NS=3;NUMALT=4;ODDS=1.38778e-17;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=71;QR=3863;RO=98;RPL=0;RPP=7.35324;RPPR=215.815;RPR=2;RUN=1;SAF=2;SAP=7.35324;SAR=0;SRF=98;SRP=215.815;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|0:47:41,5,1,0,0:41:1606:5,1,0,0:186,40,0,0:-2.85266,0,-130.544,-11.8952,-128.754,-143.669,-15.1949,-132.049,-143.97,-147.265,-15.1949,-132.049,-143.97,-147.265,-147.265 0|0:33:22,9,0,0,2:22:868:9,0,0,2:354,0,0,71:-22.526,0,-68.7475,-29.1487,-71.4568,-100.575,-29.1487,-71.4568,-100.575,-100.575,-23.3704,-65.6749,-94.792,-94.792,-94.19 0|0:44:35,1,4,3,0:35:1389:1,4,3,0:39,156,118,0:-2.30489,-9.63229,-123.703,0,-111.181,-113.182,-3.12202,-114.297,-104.68,-116.6,-12.8409,-124.004,-114.386,-117.503,-127.21 dDocent_Contig_5843 20 . C T 495.292 . AB=0.182609;ABP=103.634;AC=3;AF=0.5;AN=6;AO=21;CIGAR=1X1M;DP=115;DPB=115;DPRA=0;EPP=48.6112;EPPR=168.042;GTI=0;LEN=1;MEANALT=2;MQM=60;MQMR=60;NS=3;NUMALT=2;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=821;QR=2967;RO=76;RPL=0;RPP=48.6112;RPPR=168.042;RPR=21;RUN=1;SAF=21;SAP=48.6112;SAR=0;SRF=76;SRP=168.042;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|1:57:45,5,7:45:1742:5,7:200,281:-9.60884,-6.68095,-148.243,0,-126.592,-140.961 0|1:22:13,6,3:13:510:6,3:240,114:-15.8699,0,-40.1444,-10.4418,-32.6047,-51.4741 0|1:36:18,7,11:18:715:7,11:273,426:-29.5733,-12.5519,-69.314,0,-36.4315,-55.557 dDocent_Contig_5844 11 . T G 32.4675 . AB=0.222222;ABP=9.04217;AC=1;AF=0.166667;AN=6;AO=4;CIGAR=1X;DP=90;DPB=90;DPRA=2.96154;EPP=11.6962;EPPR=189.757;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=58.0698;NS=3;NUMALT=1;ODDS=0;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=161;QR=3441;RO=86;RPL=0;RPP=11.6962;RPPR=189.757;RPR=4;RUN=1;SAF=4;SAP=11.6962;SAR=0;SRF=86;SRP=189.757;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:68:66,2:66:2652:2:79:0,-12.9728,-225.901 0/1:9:7,2:7:258:2:82:-5.07041,0,-20.7484 0/0:13:13,0:13:531:0:0:0,-3.91339,-46.5003 dDocent_Contig_5845 29 . A G 3008.72 . AB=0.879121;ABP=116.619;AC=4;AF=0.666667;AN=6;AO=94;CIGAR=2X;DP=105;DPB=105;DPRA=0;EPP=207.129;EPPR=26.8965;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=3677;QR=445;RO=11;RPL=0;RPP=207.129;RPPR=26.8965;RPR=94;RUN=1;SAF=94;SAP=207.129;SAR=0;SRF=11;SRP=26.8965;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|1:53:5,48:5:201:48:1866:-152.193,0,-2.51593 1|1:14:0,14:0:0:14:556:-50.3813,-4.21442,0 0|1:38:6,32:6:244:32:1255:-101.779,0,-10.8997 dDocent_Contig_5846 32 . C G 2679.27 . AB=0.698413;ABP=46.0951;AC=3;AF=0.5;AN=6;AO=88;CIGAR=1X;DP=126;DPB=126;DPRA=0;EPP=194.1;EPPR=85.5263;GTI=0;LEN=1;MEANALT=1;MQM=55.6818;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=3506;QR=1509;RO=38;RPL=0;RPP=194.1;RPPR=85.5263;RPR=88;RUN=1;SAF=88;SAP=194.1;SAR=0;SRF=38;SRP=85.5263;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:81:25,56:25:997:56:2227:-172.703,0,-65.6425 0/1:21:3,18:3:121:18:713:-57.5898,0,-4.95836 0/1:24:10,14:10:391:14:566:-43.1567,0,-28.3199 dDocent_Contig_5847 18 . G A 36.2038 . AB=0.15;ABP=24.2907;AC=1;AF=0.166667;AN=6;AO=4;CIGAR=1X;DP=105;DPB=105;DPRA=1.04412;EPP=11.6962;EPPR=222.329;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=0.950495;PAO=0;PQA=0;PQR=0;PRO=0;QA=157;QR=3992;RO=101;RPL=0;RPP=11.6962;RPPR=222.329;RPR=4;RUN=1;SAF=4;SAP=11.6962;SAR=0;SRF=101;SRP=222.329;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:34:34,0:34:1353:0:0:0,-10.235,-122.031 0/0:51:50,1:50:1961:1:34:0,-11.9536,-173.307 0/1:20:17,3:17:678:3:123:-5.44419,0,-55.3276 dDocent_Contig_5848 9 . A G 2061.47 . AB=0.274924;ABP=148.656;AC=3;AF=0.5;AN=6;AO=91;CIGAR=1X;DP=331;DPB=331;DPRA=0;EPP=200.614;EPPR=524.164;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=3449;QR=9169;RO=240;RPL=0;RPP=200.614;RPPR=524.164;RPR=91;RUN=1;SAF=91;SAP=200.614;SAR=0;SRF=240;SRP=524.164;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:146:116,30:116:4410:30:1148:-59.6705,0,-353.014 0/1:106:64,42:64:2463:42:1581:-110.651,0,-189.963 0/1:79:60,19:60:2296:19:720:-41.3482,0,-183.077 dDocent_Contig_5849 13 . C A 5648.62 . AB=0;ABP=0;AC=4;AF=0.666667;AN=6;AO=2;CIGAR=1X1M;DP=243;DPB=243;DPRA=0;EPP=7.35324;EPPR=137.642;GTI=0;LEN=1;MEANALT=2;MQM=60;MQMR=60;NS=3;NUMALT=2;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=74;QR=2481;RO=62;RPL=0;RPP=7.35324;RPPR=137.642;RPR=2;RUN=1;SAF=2;SAP=7.35324;SAR=0;SRF=62;SRP=137.642;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|1:147:48,99,0:48:1932:99,0:3869,0:-303.987,0,-129.823,-318.436,-159.625,-477.663 1|1:25:0,23,2:0:0:23,2:930,74:-83.6309,-6.92369,0,-77.5814,-0.501733,-76.9793 0|1:71:14,57,0:14:549:57,0:2244,0:-180.766,0,-28.372,-184.981,-45.5307,-230.12 dDocent_Contig_5852 7 . A C 10492 . AB=0.0439749;ABP=3165.86;AC=0;AF=0;AN=6;AO=77;CIGAR=1X2M1X5M1X3M;DP=1751;DPB=1751;DPRA=0;EPP=170.214;EPPR=1416.64;GTI=0;LEN=1;MEANALT=38.6667;MQM=47.3117;MQMR=59.9985;NS=3;NUMALT=5;ODDS=0;PAIRED=0.714286;PAIREDR=0.761905;PAO=0;PQA=0;PQR=0;PRO=0;QA=2526;QR=25215;RO=651;RPL=0;RPP=170.214;RPPR=1416.64;RPR=77;RUN=1;SAF=77;SAP=170.214;SAR=0;SRF=651;SRP=1416.64;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|0:754:297,39,181,37,40,25:297:11520:39,181,37,40,25:1280,6633,1409,1598,983:-437.22,-425.948,-1360.67,0,-845.786,-891.977,-412.411,-1258.2,-832.25,-1347.74,-395.008,-1240.79,-814.848,-1227.26,-1329.43,-445.777,-1291.56,-865.616,-1278.03,-1260.62,-1384.71 0|0:438:135,23,122,29,13,23:135:5195:23,122,29,13,23:763,4517,892,527,922:-321.655,-302.538,-722.137,0,-366.774,-389.803,-294.487,-661.253,-358.722,-712.278,-318.834,-685.602,-383.07,-677.55,-741.445,-286.331,-653.1,-350.567,-645.047,-669.397,-705.932 0|0:559:219,15,124,34,26,17:219:8500:15,124,34,26,17:483,4517,1360,1025,672:-295.849,-324.215,-1018.09,0,-660.833,-661.066,-249.987,-910.819,-586.607,-938.145,-277.448,-938.279,-614.068,-864.054,-968.013,-306.477,-967.308,-643.097,-893.083,-920.543,-999.751 dDocent_Contig_5853 65 . A T 1121.64 . AB=0.5;ABP=3.0103;AC=3;AF=0.5;AN=6;AO=39;CIGAR=1X;DP=78;DPB=78;DPRA=0;EPP=87.6977;EPPR=87.6977;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=6.93889e-18;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=1557;QR=1542;RO=39;RPL=39;RPP=87.6977;RPPR=87.6977;RPR=0;RUN=1;SAF=39;SAP=87.6977;SAR=0;SRF=39;SRP=87.6977;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:31:18,13:18:717:13:511:-37.0015,0,-55.5222 0/1:27:12,15:12:467:15:603:-46.4808,0,-34.2467 0/1:20:9,11:9:358:11:443:-34.2051,0,-26.5609 dDocent_Contig_5854 7 . A G 1002.35 . AB=0.571429;ABP=6.1124;AC=2;AF=0.333333;AN=6;AO=42;CIGAR=1X;DP=96;DPB=96;DPRA=0;EPP=94.2121;EPPR=118.098;GTI=0;LEN=1;MEANALT=1.33333;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=1458;QR=2028;RO=53;RPL=0;RPP=94.2121;RPPR=118.098;RPR=42;RUN=1;SAF=42;SAP=94.2121;SAR=0;SRF=53;SRP=118.098;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:26:24,2:24:921:2:78:0,-0.423307,-75.8041 0/1:30:10,19:10:381:19:668:-51.4168,0,-25.6161 0/1:40:19,21:19:726:21:712:-52.3403,0,-53.629 dDocent_Contig_5855 10 . C T 32.0933 . AB=0.121212;ABP=44.1367;AC=1;AF=0.166667;AN=6;AO=4;CIGAR=1X;DP=67;DPB=67;DPRA=1.94118;EPP=11.6962;EPPR=139.813;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=0.984127;PAO=0;PQA=0;PQR=0;PRO=0;QA=162;QR=2441;RO=63;RPL=0;RPP=11.6962;RPPR=139.813;RPR=4;RUN=1;SAF=4;SAP=11.6962;SAR=0;SRF=63;SRP=139.813;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:20:20,0:20:749:0:0:0,-6.0206,-67.7137 0/1:33:29,4:29:1146:4:162:-5.03297,0,-93.4836 0/0:14:14,0:14:546:0:0:0,-4.21442,-49.4825 dDocent_Contig_5856 10 . G C 2938.91 . AB=0.635762;ABP=27.1841;AC=3;AF=0.5;AN=6;AO=96;CIGAR=1X;DP=151;DPB=151;DPRA=0;EPP=211.472;EPPR=122.441;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=6.93889e-18;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=3823;QR=2191;RO=55;RPL=0;RPP=211.472;RPPR=122.441;RPR=96;RUN=1;SAF=96;SAP=211.472;SAR=0;SRF=55;SRP=122.441;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:80:30,50:30:1187:50:1989:-155.126,0,-83.0259 0/1:34:17,17:17:682:17:696:-52.7317,0,-51.4754 0/1:37:8,29:8:322:29:1138:-91.5567,0,-18.2102 dDocent_Contig_5857 92 . G T 571.33 . AB=0.337662;ABP=20.6359;AC=2;AF=0.333333;AN=6;AO=27;CIGAR=1M1D1X;DP=90;DPB=81;DPRA=0;EPP=61.6401;EPPR=139.813;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=960;QR=2147;RO=63;RPL=27;RPP=61.6401;RPPR=139.813;RPR=0;RUN=1;SAF=27;SAP=61.6401;SAR=0;SRF=63;SRP=139.813;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|1:51:28,23:28:953:23:816:-58.4088,0,-70.7245 0|1:26:23,3:23:777:3:107:-2.15539,0,-62.4169 0|0:13:12,1:12:417:1:37:0,-0.215561,-34.1655 dDocent_Contig_5858 54 . G A 5200.77 . AB=0.620112;ABP=25.4408;AC=4;AF=0.666667;AN=6;AO=167;CIGAR=1X;DP=239;DPB=239;DPRA=0;EPP=365.646;EPPR=159.356;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=0.952096;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=6579;QR=2842;RO=72;RPL=167;RPP=365.646;RPPR=159.356;RPR=0;RUN=1;SAF=167;SAP=365.646;SAR=0;SRF=72;SRP=159.356;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:98:43,55:43:1681:55:2160:-165.077,0,-122.013 1/1:60:4,56:4:164:56:2224:-185.185,-2.9119,0 0/1:81:25,56:25:997:56:2195:-173.338,0,-65.6404 dDocent_Contig_5859 33 . A C 1774.38 . AB=0.682353;ABP=27.5607;AC=3;AF=0.5;AN=6;AO=58;CIGAR=1X3M;DP=85;DPB=87;DPRA=0;EPP=128.956;EPPR=52.9542;GTI=0;LEN=1;MEANALT=1.66667;MQM=60;MQMR=60;NS=3;NUMALT=2;ODDS=0;PAIRED=0.982759;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=2302;QR=914;RO=23;RPL=0;RPP=128.956;RPPR=52.9542;RPR=58;RUN=1;SAF=58;SAP=128.956;SAR=0;SRF=23;SRP=52.9542;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|1:44:9,2,33:9:358:2,33:81,1296:-103.858,-99.8879,-128.764,0,-22.7904,-19.5369 0|1:31:11,2,18:11:442:2,18:80,721:-56.0879,-52.8091,-88.631,0,-29.8351,-31.0065 0|1:10:3,0,7:3:114:0,7:0,285:-23.0141,-23.9172,-33.2574,0,-9.72801,-7.6208 dDocent_Contig_5860 65 . G C 2426.27 . AB=0.745614;ABP=62.7448;AC=3;AF=0.5;AN=6;AO=85;CIGAR=1X;DP=114;DPB=114;DPRA=0;EPP=187.585;EPPR=63.8115;GTI=0;LEN=1;MEANALT=1.33333;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=6.93889e-18;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=3130;QR=1058;RO=28;RPL=85;RPP=187.585;RPPR=63.8115;RPR=0;RUN=1;SAF=85;SAP=187.585;SAR=0;SRF=28;SRP=63.8115;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:53:15,38:15:569:38:1431:-113.08,0,-35.5946 0/1:19:4,15:4:145:15:532:-42.4824,0,-7.68399 0/1:42:9,32:9:344:32:1167:-92.5873,0,-18.5868 dDocent_Contig_5861 13 . G A 5613.3 . AB=0.698529;ABP=96.1281;AC=3;AF=0.5;AN=6;AO=190;CIGAR=1X;DP=272;DPB=272;DPRA=0;EPP=415.59;EPPR=181.071;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=1.38778e-17;PAIRED=1;PAIREDR=0.97561;PAO=0;PQA=0;PQR=0;PRO=0;QA=7202;QR=3257;RO=82;RPL=0;RPP=415.59;RPPR=181.071;RPR=190;RUN=1;SAF=190;SAP=415.59;SAR=0;SRF=82;SRP=181.071;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:113:35,78:35:1413:78:3001:-236.203,0,-93.4039 0/1:78:24,54:24:953:54:2012:-157.817,0,-62.5887 0/1:81:23,58:23:891:58:2189:-172.832,0,-56.1075 dDocent_Contig_5862 16 . T A 62.4677 . AB=0.125;ABP=61.6401;AC=1;AF=0.166667;AN=6;AO=6;CIGAR=1X;DP=155;DPB=155;DPRA=0.897196;EPP=16.0391;EPPR=326.56;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=246;QR=5976;RO=149;RPL=0;RPP=16.0391;RPPR=326.56;RPR=6;RUN=1;SAF=6;SAP=16.0391;SAR=0;SRF=149;SRP=326.56;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:74:74,0:74:2960:0:0:0,-22.2762,-266.481 0/0:33:33,0:33:1329:0:0:0,-9.93399,-119.87 0/1:48:42,6:42:1687:6:246:-8.07068,0,-137.604 dDocent_Contig_5863 10 . T C 6753.85 . AB=0.84186;ABP=221.258;AC=4;AF=0.666667;AN=6;AO=211;CIGAR=1X;DP=247;DPB=247;DPRA=0;EPP=461.191;EPPR=81.1833;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=8337;QR=1325;RO=36;RPL=0;RPP=461.191;RPPR=81.1833;RPR=211;RUN=1;SAF=211;SAP=461.191;SAR=0;SRF=36;SRP=81.1833;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:126:21,105:21:794:105:4176:-337.871,0,-33.8494 1/1:32:2,30:2:74:30:1164:-98.0163,-2.60708,0 0/1:89:13,76:13:457:76:2997:-243.021,0,-14.6608 dDocent_Contig_5864 98 . N G 93.2286 . AB=0;ABP=0;AC=2;AF=1;AN=2;AO=3;CIGAR=1X;DP=3;DPB=3;DPRA=0;EPP=9.52472;EPPR=0;GTI=0;LEN=1;MEANALT=1;MQM=39.3333;MQMR=0;NS=1;NUMALT=1;ODDS=6.68461;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=105;QR=0;RO=0;RPL=3;RPP=9.52472;RPPR=0;RPR=0;RUN=1;SAF=3;SAP=9.52472;SAR=0;SRF=0;SRP=0;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 1/1:3:0,3:0:0:3:105:-9.32232,-0.90309,0 ./.:.:.:.:.:.:.:. ./.:.:.:.:.:.:.:. dDocent_Contig_5865 13 . T G 175.896 . AB=0.14433;ABP=109.592;AC=3;AF=0.5;AN=6;AO=14;CIGAR=1X;DP=97;DPB=97;DPRA=0;EPP=33.4109;EPPR=183.243;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=6.93889e-18;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=567;QR=3329;RO=83;RPL=0;RPP=33.4109;RPPR=183.243;RPR=14;RUN=1;SAF=14;SAP=33.4109;SAR=0;SRF=83;SRP=183.243;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:62:52,10:52:2081:10:408:-18.4167,0,-168.805 0/1:17:15,2:15:607:2:80:-2.47407,0,-49.8506 0/1:18:16,2:16:641:2:79:-2.0787,0,-52.6061 dDocent_Contig_5866 25 . T A 563.199 . AB=0.302632;ABP=28.7251;AC=3;AF=0.5;AN=6;AO=23;CIGAR=1X;DP=76;DPB=76;DPRA=0;EPP=52.9542;EPPR=118.098;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=929;QR=2132;RO=53;RPL=0;RPP=52.9542;RPPR=118.098;RPR=23;RUN=1;SAF=23;SAP=52.9542;SAR=0;SRF=53;SRP=118.098;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:30:23,7:23:920:7:285:-16.9935,0,-74.0748 0/1:13:6,7:6:245:7:281:-21.749,0,-18.5161 0/1:33:24,9:24:967:9:363:-23.1003,0,-77.3925 dDocent_Contig_5867 150 . T G 1597.44 . AB=0.275;ABP=108.544;AC=2;AF=0.333333;AN=6;AO=72;CIGAR=1X;DP=317;DPB=317;DPRA=0;EPP=159.356;EPPR=535.021;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=2857;QR=9599;RO=245;RPL=0;RPP=159.356;RPPR=535.021;RPR=72;RUN=1;SAF=0;SAP=159.356;SAR=72;SRF=0;SRP=535.021;SRR=245;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:171:113,58:113:4456:58:2287:-154.509,0,-349.523 0/1:69:61,8:61:2380:8:324:-8.75812,0,-193.58 0/0:77:71,6:71:2763:6:246:0,-0.65919,-226.278 dDocent_Contig_5868 11 . C T 54.271 . AB=0.0919118;ABP=396.462;AC=2;AF=0.333333;AN=6;AO=31;CIGAR=1X;DP=444;DPB=444;DPRA=0;EPP=61.9202;EPPR=897.657;GTI=0;LEN=1;MEANALT=1.33333;MQM=59.2581;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=0.967742;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=1225;QR=16312;RO=412;RPL=0;RPP=70.3259;RPPR=897.657;RPR=31;RUN=1;SAF=30;SAP=61.9202;SAR=1;SRF=412;SRP=897.657;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:172:165,6:165:6539:6:238:0,-30.0899,-566.439 0/1:201:184,17:184:7250:17:673:-0.161769,0,-591.672 0/1:71:63,8:63:2523:8:314:-7.24891,0,-205.829 dDocent_Contig_5869 15 . C T 425.009 . AB=0.126126;ABP=407.315;AC=2;AF=0.333333;AN=6;AO=47;CIGAR=2X;DP=452;DPB=452;DPRA=0;EPP=105.07;EPPR=882.457;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=0.992593;PAO=0;PQA=0;PQR=0;PRO=0;QA=1807;QR=16098;RO=405;RPL=0;RPP=105.07;RPPR=882.457;RPR=47;RUN=1;SAF=47;SAP=105.07;SAR=0;SRF=405;SRP=882.457;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|1:246:213,33:213:8444:33:1265:-40.0813,0,-685.44 0|1:87:78,9:78:3117:9:353:-5.9425,0,-254.423 0|0:119:114,5:114:4537:5:189:0,-18.4493,-390.889 dDocent_Contig_5870 107 . N A 212.958 . AB=0;ABP=0;AC=2;AF=1;AN=2;AO=7;CIGAR=1X;DP=7;DPB=7;DPRA=0;EPP=18.2106;EPPR=0;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=0;NS=1;NUMALT=1;ODDS=9.4572;PAIRED=1;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=233;QR=0;RO=0;RPL=0;RPP=18.2106;RPPR=0;RPR=7;RUN=1;SAF=0;SAP=18.2106;SAR=7;SRF=0;SRP=0;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 1/1:7:0,7:0:0:7:233:-21.2957,-2.10721,0 ./.:.:.:.:.:.:.:. ./.:.:.:.:.:.:.:. dDocent_Contig_5871 11 . C A 276.873 . AB=0.113772;ABP=219.39;AC=1;AF=0.166667;AN=6;AO=20;CIGAR=1X2M1X;DP=306;DPB=306;DPRA=0;EPP=46.4397;EPPR=584.965;GTI=0;LEN=1;MEANALT=2.66667;MQM=60;MQMR=60;NS=3;NUMALT=2;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=783;QR=10499;RO=268;RPL=0;RPP=46.4397;RPPR=584.965;RPR=20;RUN=1;SAF=20;SAP=46.4397;SAR=0;SRF=268;SRP=584.965;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|0:139:133,1,3:133:5252:1,3:41,118:0,-36.6436,-468.541,-30.3008,-459.136,-461.617 0|1:76:63,11,2:63:2462:11,2:425,81:-15.9201,0,-199.069,-28.203,-195.701,-229.999 0|0:91:72,8,11:72:2785:8,11:317,448:-15.2901,-10.8789,-237.193,0,-202.641,-225.42 dDocent_Contig_5872 17 . T A 9710.21 . AB=0.816062;ABP=337.935;AC=3;AF=0.5;AN=6;AO=315;CIGAR=1X;DP=386;DPB=386;DPRA=0;EPP=687.024;EPPR=157.185;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=12140;QR=2669;RO=71;RPL=0;RPP=687.024;RPPR=157.185;RPR=315;RUN=1;SAF=315;SAP=687.024;SAR=0;SRF=71;SRP=157.185;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:279:45,234:45:1694:234:9031:-728.423,0,-68.7313 0/1:45:7,38:7:260:38:1436:-115.963,0,-10.2094 0/1:62:19,43:19:715:43:1673:-132.159,0,-46.0156 dDocent_Contig_5873 8 . A T 8162.22 . AB=0.0888889;ABP=201.193;AC=1;AF=0.166667;AN=6;AO=17;CIGAR=2X;DP=306;DPB=306;DPRA=0;EPP=39.9253;EPPR=63.8115;GTI=0;LEN=1;MEANALT=2.33333;MQM=60;MQMR=60;NS=3;NUMALT=2;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=640;QR=1067;RO=28;RPL=0;RPP=39.9253;RPPR=63.8115;RPR=17;RUN=1;SAF=17;SAP=39.9253;SAR=0;SRF=28;SRP=63.8115;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|0:171:10,5,156:10:382:5,156:192,5892:-495.505,-482.754,-512.593,-15.6186,-31.1989,0 1|0:49:10,11,28:10:381:11,28:410,1067:-86.8239,-56.2731,-84.2158,-2.3011,0,-25.1303 0|0:86:8,1,76:8:304:1,76:38,2920:-237.303,-236.595,-261.225,0,-21.8153,-2.05355 dDocent_Contig_5875 65 . G A 1002.4 . AB=0.292857;ABP=55.1877;AC=3;AF=0.5;AN=6;AO=41;CIGAR=1X;DP=140;DPB=140;DPRA=0;EPP=92.0407;EPPR=217.986;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=1632;QR=3859;RO=99;RPL=41;RPP=92.0407;RPPR=217.986;RPR=0;RUN=1;SAF=41;SAP=92.0407;SAR=0;SRF=99;SRP=217.986;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:73:60,13:60:2348:13:520:-25.1716,0,-189.513 0/1:34:21,13:21:802:13:508:-35.8269,0,-62.2528 0/1:33:18,15:18:709:15:604:-44.7647,0,-54.203 dDocent_Contig_5876 107 . N T 259.147 . AB=0;ABP=0;AC=4;AF=1;AN=4;AO=8;CIGAR=1X;DP=8;DPB=8;DPRA=0;EPP=20.3821;EPPR=0;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=0;NS=2;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=277;QR=0;RO=0;RPL=0;RPP=20.3821;RPPR=0;RPR=8;RUN=1;SAF=0;SAP=20.3821;SAR=8;SRF=0;SRP=0;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL ./.:.:.:.:.:.:.:. 1/1:5:0,5:0:0:5:173:-15.9102,-1.50515,0 1/1:3:0,3:0:0:3:104:-9.70309,-0.90309,0 dDocent_Contig_5877 7 . A G 1323.15 . AB=0.543689;ABP=4.71796;AC=3;AF=0.5;AN=6;AO=56;CIGAR=1X;DP=103;DPB=103;DPRA=0;EPP=124.613;EPPR=105.07;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=1866;QR=1780;RO=47;RPL=0;RPP=124.613;RPPR=105.07;RPR=56;RUN=1;SAF=56;SAP=124.613;SAR=0;SRF=47;SRP=105.07;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:28:16,12:16:609:12:402:-28.0696,0,-46.7198 0/1:50:16,34:16:606:34:1135:-87.3736,0,-39.8238 0/1:25:15,10:15:565:10:329:-22.3946,0,-43.6613 dDocent_Contig_5878 202 . A G 4655.44 . AB=0.747573;ABP=112.68;AC=5;AF=0.833333;AN=6;AO=154;CIGAR=1X1M;DP=206;DPB=206;DPRA=0;EPP=337.417;EPPR=59.4686;GTI=0;LEN=1;MEANALT=2;MQM=60;MQMR=60;NS=3;NUMALT=2;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=5550;QR=915;RO=26;RPL=154;RPP=337.417;RPPR=59.4686;RPR=0;RUN=1;SAF=0;SAP=337.417;SAR=154;SRF=0;SRP=59.4686;SRR=26;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 1|1:87:3,11,71:3:109:11,71:402,2571:-232.96,-201.014,-206.605,-23.9665,0,-11.497 1|1:80:12,13,55:12:425:13,55:447,1956:-157.459,-124.778,-155.485,-1.66462,0,-19.7336 0|1:39:11,0,28:11:381:0,28:0,1023:-80.6442,-83.9556,-114.915,0,-31.3107,-22.8819 dDocent_Contig_5879 11 . A T 337.36 . AB=0.254237;ABP=33.963;AC=1;AF=0.166667;AN=6;AO=15;CIGAR=1X3M1X2M1I3M;DP=59;DPB=62.1;DPRA=0;EPP=35.5824;EPPR=61.6401;GTI=0;LEN=1;MEANALT=3.33333;MQM=48.3333;MQMR=60;NS=3;NUMALT=5;ODDS=0;PAIRED=0.666667;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=521;QR=1063;RO=27;RPL=0;RPP=35.5824;RPPR=61.6401;RPR=15;RUN=1;SAF=15;SAP=35.5824;SAR=0;SRF=27;SRP=61.6401;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|0:17:11,3,0,0,3,0:11:436:3,0,0,3,0:106,0,0,118,0:-6.41982,-1.39829,-36.3854,-9.73115,-37.2885,-45.6371,-9.73115,-37.2885,-45.6371,-45.6371,0,-27.583,-35.9294,-35.9294,-35.0263,-9.73115,-37.2885,-45.6371,-45.6371,-35.9294,-45.6371 0|0:21:7,2,2,5,2,3:7:274:2,2,5,2,3:65,79,60,73,120:-7.8129,-4.9399,-26.9145,-3.39854,-21.0058,-25.3783,-7.41707,-24.9922,-23.4529,-28.4508,-3.94022,-21.546,-20.0088,-23.9938,-25.9182,0,-17.6149,-16.0771,-20.0663,-16.6176,-21.6873 0|1:21:9,10,0,1,0,0:9:353:10,0,1,0,0:350,0,12,0,0:-25.0203,0,-26.1355,-27.7296,-29.1458,-56.7881,-27.2303,-28.6527,-56.2806,-55.9796,-27.7296,-29.1458,-56.7881,-56.2806,-56.7881,-27.7296,-29.1458,-56.7881,-56.2806,-56.7881,-56.7881 dDocent_Contig_5880 104 . N A 201.432 . AB=0;ABP=0;AC=4;AF=1;AN=4;AO=7;CIGAR=4X;DP=7;DPB=7;DPRA=0;EPP=18.2106;EPPR=0;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=0;NS=2;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=214;QR=0;RO=0;RPL=0;RPP=18.2106;RPPR=0;RPR=7;RUN=1;SAF=0;SAP=18.2106;SAR=7;SRF=0;SRP=0;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 1|1:5:0,5:0:0:5:161:-14.8076,-1.50515,0 .:.:.:.:.:.:.:. 1|1:2:0,2:0:0:2:53:-5.03393,-0.60206,0 dDocent_Contig_5882 107 . N T 467.7 . AB=0;ABP=0;AC=4;AF=1;AN=4;AO=15;CIGAR=1X4I1X;DP=15;DPB=45;DPRA=0;EPP=35.5824;EPPR=0;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=0;NS=2;NUMALT=1;ODDS=0;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=509;QR=0;RO=0;RPL=0;RPP=35.5824;RPPR=0;RPR=15;RUN=1;SAF=15;SAP=35.5824;SAR=0;SRF=0;SRP=0;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 1|1:12:0,12:0:0:12:409:-37.1383,-3.61236,0 .:.:.:.:.:.:.:. 1|1:3:0,3:0:0:3:100:-9.33037,-0.90309,0 dDocent_Contig_5883 17 . G A 82560.8 . AB=0;ABP=0;AC=6;AF=1;AN=6;AO=2417;CIGAR=1X;DP=2487;DPB=2487;DPRA=0;EPP=5251.46;EPPR=150.67;GTI=0;LEN=1;MEANALT=1.66667;MQM=59.8924;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=0.961109;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=94481;QR=2633;RO=68;RPL=0;RPP=5251.46;RPPR=150.67;RPR=2417;RUN=1;SAF=2417;SAP=5251.46;SAR=0;SRF=68;SRP=150.67;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 1/1:1266:51,1214:51:1990:1214:47260:-4069.88,-201.601,0 1/1:493:3,489:3:117:489:19115:-1708.04,-137.527,0 1/1:728:14,714:14:526:714:28106:-2477.69,-171.486,0 dDocent_Contig_5884 63 . T A 981.863 . AB=0.0728643;ABP=633.719;AC=0;AF=0;AN=6;AO=29;CIGAR=1M1D2M2X2M1X4M;DP=398;DPB=390.308;DPRA=0;EPP=65.983;EPPR=639.252;GTI=0;LEN=1;MEANALT=3.66667;MQM=18;MQMR=60;NS=3;NUMALT=2;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=522;QR=11194;RO=293;RPL=29;RPP=65.983;RPPR=639.252;RPR=0;RUN=1;SAF=29;SAP=65.983;SAR=0;SRF=293;SRP=639.252;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|0:237:182,12,30:182:7012:12,30:216,1171:-41.5389,-83.7623,-655.91,0,-563.269,-566.839 0|0:60:43,8,8:43:1665:8,8:144,296:-11.3549,-15.9953,-150.374,0,-128.575,-134.54 0|0:101:68,9,23:68:2517:9,23:162,868:-50.8153,-61.886,-265.09,0,-196.659,-199.171 dDocent_Contig_5885 7 . A G 604.788 . AB=0.191388;ABP=175.907;AC=3;AF=0.5;AN=6;AO=40;CIGAR=1X;DP=209;DPB=209;DPRA=0;EPP=89.8692;EPPR=361.303;GTI=0;LEN=1;MEANALT=2;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=1414;QR=6271;RO=165;RPL=0;RPP=89.8692;RPPR=361.303;RPR=40;RUN=1;SAF=40;SAP=89.8692;SAR=0;SRF=165;SRP=361.303;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:90:78,10:78:2950:10:372:-7.18495,0,-239.062 0/1:53:32,20:32:1210:20:689:-46.5442,0,-93.4232 0/1:66:55,10:55:2111:10:353:-12.2725,0,-170.401 dDocent_Contig_5886 8 . A G 58.6857 . AB=0.0609756;ABP=140.29;AC=2;AF=0.333334;AN=6;AO=5;CIGAR=1X9M;DP=208;DPB=212.4;DPRA=0;EPP=13.8677;EPPR=404.733;GTI=0;LEN=1;MEANALT=1.5;MQM=60;MQMR=60;NS=3;NUMALT=3;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=190;QR=7233;RO=185;RPL=0;RPP=13.8677;RPPR=404.733;RPR=5;RUN=1;SAF=5;SAP=13.8677;SAR=0;SRF=185;SRP=404.733;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|1:126:115,11,0,0:115:4476:11,0,0:435,0,0:-1.57603,0,-364.924,-36.1945,-368.235,-404.035,-36.1945,-368.235,-404.035,-404.035 0|1:24:22,0,0,2:22:865:0,0,2:0,0,77:-0.0844219,-6.70708,-77.8668,-6.70708,-77.8668,-77.8668,0,-71.5451,-71.5451,-70.943 0|0:58:48,0,7,3:48:1892:0,7,3:0,269,113:-7.63954,-22.089,-177.761,0,-155.678,-153.571,-12.8313,-168.502,-146.419,-167.599 dDocent_Contig_5887 13 . T A 273.016 . AB=0.202899;ABP=55.9124;AC=2;AF=0.333333;AN=6;AO=14;CIGAR=1X;DP=81;DPB=81;DPRA=2.875;EPP=33.4109;EPPR=148.499;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=0.857143;PAIREDR=0.80597;PAO=0;PQA=0;PQR=0;PRO=0;QA=565;QR=2684;RO=67;RPL=0;RPP=33.4109;RPPR=148.499;RPR=14;RUN=1;SAF=14;SAP=33.4109;SAR=0;SRF=67;SRP=148.499;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:50:40,10:40:1609:10:404:-21.6686,0,-129.99 0/1:19:15,4:15:596:4:161:-9.15591,0,-48.2561 0/0:12:12,0:12:479:0:0:0,-3.61236,-43.4583 dDocent_Contig_5888 15 . T C 154.872 . AB=0.116564;ABP=211.165;AC=3;AF=0.5;AN=6;AO=19;CIGAR=1X;DP=163;DPB=163;DPRA=0;EPP=44.2683;EPPR=315.702;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=766;QR=5779;RO=144;RPL=0;RPP=44.2683;RPPR=315.702;RPR=19;RUN=1;SAF=19;SAP=44.2683;SAR=0;SRF=144;SRP=315.702;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:84:75,9:75:3010:9:361:-7.56686,0,-245.692 0/1:40:34,6:34:1358:6:244:-10.2976,0,-110.439 0/1:39:35,4:35:1411:4:161:-3.1351,0,-115.501 dDocent_Contig_5889 10 . A C 156.334 . AB=0.204082;ABP=40.2799;AC=3;AF=0.5;AN=6;AO=10;CIGAR=1X;DP=49;DPB=49;DPRA=0;EPP=24.725;EPPR=85.5263;GTI=0;LEN=1;MEANALT=1.33333;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=0.7;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=380;QR=1437;RO=38;RPL=0;RPP=24.725;RPPR=85.5263;RPR=10;RUN=1;SAF=10;SAP=24.725;SAR=0;SRF=38;SRP=85.5263;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:14:11,3:11:422:3:121:-7.06578,0,-34.1174 0/1:14:9,5:9:322:5:177:-12.0593,0,-25.1024 0/1:21:18,2:18:693:2:82:-1.34962,0,-56.2728 dDocent_Contig_5890 19 . C T 17895.3 . AB=0.0594495;ABP=4596.81;AC=0;AF=0;AN=6;AO=162;CIGAR=1X1M1X;DP=2725;DPB=2729;DPRA=0;EPP=354.789;EPPR=3664.11;GTI=0;LEN=1;MEANALT=6.66667;MQM=60;MQMR=60;NS=3;NUMALT=2;ODDS=0;PAIRED=1;PAIREDR=0.992883;PAO=0;PQA=0;PQR=0;PRO=0;QA=6454;QR=66907;RO=1686;RPL=0;RPP=354.789;RPPR=3664.11;RPR=162;RUN=1;SAF=162;SAP=354.789;SAR=0;SRF=1686;SRP=3664.11;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|0:1525:932,100,392:932:37075:100,392:3996,15723:-1014.82,-966.262,-3988.6,0,-2723.33,-2934.44 0|0:464:285,23,140:285:11181:23,140:907,5633:-378.434,-389.608,-1302.12,0,-844.816,-877.293 0|0:736:469,39,166:469:18651:39,166:1551,6596:-401.803,-415.291,-1939.08,0,-1407.83,-1485.55 dDocent_Contig_5892 19 . G C 2693.81 . AB=0.576923;ABP=11.028;AC=3;AF=0.5;AN=6;AO=90;CIGAR=1X;DP=156;DPB=156;DPRA=0;EPP=198.443;EPPR=146.327;GTI=0;LEN=1;MEANALT=1;MQM=59.9889;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=0.0333333;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=3567;QR=2571;RO=66;RPL=0;RPP=198.443;RPPR=146.327;RPR=90;RUN=1;SAF=90;SAP=198.443;SAR=0;SRF=66;SRP=146.327;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:102:49,53:49:1906:53:2079:-156.592,0,-141.046 0/1:13:6,7:6:228:7:282:-21.8398,0,-16.9636 0/1:41:11,30:11:437:30:1206:-96.4721,0,-27.3433 dDocent_Contig_5893 96 . T C 60.9821 . AB=0.12987;ABP=94.6352;AC=2;AF=0.333333;AN=6;AO=10;CIGAR=1X;DP=106;DPB=106;DPRA=1.32759;EPP=24.725;EPPR=211.472;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=348;QR=3302;RO=96;RPL=10;RPP=24.725;RPPR=211.472;RPR=0;RUN=1;SAF=10;SAP=24.725;SAR=0;SRF=96;SRP=211.472;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:59:51,8:51:1749:8:278:-7.59724,0,-139.934 0/1:18:16,2:16:551:2:70:-1.22886,0,-44.498 0/0:29:29,0:29:1002:0:0:0,-8.72987,-90.4922 dDocent_Contig_5894 194 . T C 186.872 . AB=0.171429;ABP=68.6508;AC=1;AF=0.166667;AN=6;AO=12;CIGAR=1X;DP=110;DPB=110;DPRA=3.5;EPP=29.068;EPPR=215.815;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=0.989796;PAO=0;PQA=0;PQR=0;PRO=0;QA=455;QR=3890;RO=98;RPL=12;RPP=29.068;RPPR=215.815;RPR=0;RUN=1;SAF=0;SAP=29.068;SAR=12;SRF=0;SRP=215.815;SRR=98;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:70:58,12:58:2312:12:455:-20.2101,0,-187.166 0/0:13:13,0:13:504:0:0:0,-3.91339,-45.7016 0/0:27:27,0:27:1074:0:0:0,-8.12781,-96.9475 dDocent_Contig_5896 15 . C T 1858.06 . AB=0.663043;ABP=24.253;AC=3;AF=0.5;AN=6;AO=61;CIGAR=1X;DP=92;DPB=92;DPRA=0;EPP=135.47;EPPR=70.3259;GTI=0;LEN=1;MEANALT=1;MQM=59.918;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=2423;QR=1228;RO=31;RPL=0;RPP=135.47;RPPR=70.3259;RPR=61;RUN=1;SAF=61;SAP=135.47;SAR=0;SRF=31;SRP=70.3259;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:50:11,39:11:439:39:1542:-123.972,0,-24.8127 0/1:10:2,8:2:76:8:320:-26.1576,0,-4.20437 0/1:32:18,14:18:713:14:561:-41.1986,0,-54.8633 dDocent_Contig_5897 7 . A G 229.386 . AB=0.161538;ABP=132.363;AC=2;AF=0.333333;AN=6;AO=24;CIGAR=1X;DP=163;DPB=163;DPRA=0;EPP=55.1256;EPPR=304.845;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=808;QR=5296;RO=139;RPL=0;RPP=55.1256;RPPR=304.845;RPR=24;RUN=1;SAF=24;SAP=55.1256;SAR=0;SRF=139;SRP=304.845;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:102:84,18:84:3196:18:609:-24.4127,0,-257.093 0/1:28:25,3:25:944:3:107:-1.55167,0,-76.8441 0/0:33:30,3:30:1156:3:92:0,-1.35257,-95.7586 dDocent_Contig_5898 17 . G A 11748.8 . AB=0.857471;ABP=485.831;AC=3;AF=0.5;AN=6;AO=373;CIGAR=1X;DP=435;DPB=435;DPRA=0;EPP=812.97;EPPR=137.642;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=14573;QR=2424;RO=62;RPL=0;RPP=812.97;RPPR=137.642;RPR=373;RUN=1;SAF=373;SAP=812.97;SAR=0;SRF=62;SRP=137.642;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:208:26,182:26:1014:182:7136:-579.325,0,-28.9403 0/1:108:16,92:16:621:92:3524:-284.724,0,-23.7091 0/1:119:20,99:20:789:99:3913:-316.35,0,-35.506 dDocent_Contig_5899 11 . T C 298.256 . AB=0.185567;ABP=86.3098;AC=2;AF=0.333333;AN=6;AO=18;CIGAR=1X;DP=119;DPB=119;DPRA=2.20455;EPP=42.0968;EPPR=222.329;GTI=0;LEN=1;MEANALT=1;MQM=54.3333;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=0.980198;PAO=0;PQA=0;PQR=0;PRO=0;QA=709;QR=3999;RO=101;RPL=0;RPP=42.0968;RPPR=222.329;RPR=18;RUN=1;SAF=18;SAP=42.0968;SAR=0;SRF=101;SRP=222.329;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:70:56,14:56:2228:14:548:-26.6559,0,-179.619 0/0:22:22,0:22:860:0:0:0,-6.62266,-77.704 0/1:27:23,4:23:911:4:161:-6.69258,0,-74.1691 dDocent_Contig_5900 6 . C A 73.4269 . AB=0.206897;ABP=24.6501;AC=2;AF=0.333333;AN=6;AO=9;CIGAR=1X1M1X4M;DP=62;DPB=62;DPRA=0;EPP=22.5536;EPPR=113.755;GTI=0;LEN=1;MEANALT=1.33333;MQM=60;MQMR=60;NS=3;NUMALT=2;ODDS=0;PAIRED=0;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=314;QR=1957;RO=51;RPL=0;RPP=22.5536;RPPR=113.755;RPR=9;RUN=1;SAF=0;SAP=22.5536;SAR=9;SRF=51;SRP=113.755;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|0:33:28,3,2:28:1073:3,2:104,78:0,-0.00124755,-87.1562,-1.99984,-81.6471,-89.495 0|1:9:7,2,0:7:266:2,0:70,0:-3.93813,0,-21.5925,-6.04534,-22.1946,-27.8834 0|1:20:16,4,0:16:618:4,0:140,0:-6.92433,0,-49.939,-11.7408,-51.1431,-62.5268 dDocent_Contig_5901 16 . A T 200.88 . AB=0.168831;ABP=76.3609;AC=3;AF=0.5;AN=6;AO=13;CIGAR=1X1M1X;DP=77;DPB=77;DPRA=0;EPP=31.2394;EPPR=141.985;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=0.846154;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=524;QR=2549;RO=64;RPL=0;RPP=31.2394;RPPR=141.985;RPR=13;RUN=1;SAF=13;SAP=31.2394;SAR=0;SRF=64;SRP=141.985;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|1:38:32,6:32:1276:6:244:-10.8997,0,-103.668 0|1:19:14,5:14:553:5:200:-12.6603,0,-44.3924 0|1:20:18,2:18:720:2:80:-1.57119,0,-59.1044 dDocent_Contig_5902 118 . T C 17369.5 . AB=0.142088;ABP=1036.68;AC=3;AF=0.5;AN=6;AO=132;CIGAR=1X2M3D7M;DP=929;DPB=752;DPRA=0;EPP=289.645;EPPR=233.186;GTI=0;LEN=1;MEANALT=6;MQM=60;MQMR=60;NS=3;NUMALT=3;ODDS=1.11022e-16;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=4564;QR=3733;RO=106;RPL=0;RPP=289.645;RPPR=233.186;RPR=132;RUN=1;SAF=0;SAP=289.645;SAR=132;SRF=0;SRP=233.186;SRR=106;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 1|0:582:79,94,369,32:79:2778:94,369,32:3238,12404,1123:-1017.94,-778.712,-976.546,-36.8771,0,-151.928,-950.328,-913.448,-171.613,-1166.83 1|0:94:5,10,76,3:5:172:10,76,3:347,2576,101:-221.604,-194.901,-205.859,-14.2428,0,-5.3327,-214.926,-200.686,-20.0288,-227.991 1|0:253:22,28,182,18:22:783:28,182,18:979,6097,625:-502.924,-429.9,-485.289,-15.8264,0,-24.8586,-458.738,-442.909,-28.8384,-517.137 dDocent_Contig_5903 9 . G A 38.6898 . AB=0.116667;ABP=79.5909;AC=1;AF=0.166667;AN=6;AO=15;CIGAR=1X;DP=293;DPB=293;DPRA=0;EPP=35.5824;EPPR=606.68;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=0.996403;PAO=0;PQA=0;PQR=0;PRO=0;QA=568;QR=10643;RO=278;RPL=0;RPP=35.5824;RPPR=606.68;RPR=15;RUN=1;SAF=15;SAP=35.5824;SAR=0;SRF=278;SRP=606.68;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:142:139,3:139:5333:3:115:0,-32.0212,-469.232 0/1:60:53,7:53:2016:7:260:-5.69283,0,-163.62 0/0:91:86,5:86:3294:5:193:0,-9.65224,-278.864 dDocent_Contig_5904 13 . G A 346.5 . AB=0.236111;ABP=46.5604;AC=2;AF=0.333333;AN=6;AO=22;CIGAR=1M1D2M1X;DP=162;DPB=157.6;DPRA=0;EPP=50.7827;EPPR=307.016;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=0.363636;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=851;QR=5481;RO=140;RPL=0;RPP=50.7827;RPPR=307.016;RPR=22;RUN=1;SAF=22;SAP=50.7827;SAR=0;SRF=140;SRP=307.016;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|0:90:85,5:85:3336:5:194:0,-9.25985,-282.51 0|1:27:23,4:23:893:4:152:-5.92195,0,-72.5571 0|1:45:32,13:32:1252:13:505:-32.2509,0,-99.4151 dDocent_Contig_5905 80 . A G 3862.79 . AB=0.761111;ABP=109.605;AC=3;AF=0.5;AN=6;AO=137;CIGAR=1X;DP=180;DPB=180;DPRA=0;EPP=300.502;EPPR=96.3836;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=0.992701;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=4946;QR=1548;RO=43;RPL=137;RPP=300.502;RPPR=96.3836;RPR=0;RUN=1;SAF=137;SAP=300.502;SAR=0;SRF=43;SRP=96.3836;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:84:24,60:24:863:60:2184:-171.53,0,-52.7011 0/1:36:8,28:8:298:28:1029:-82.0787,0,-16.3355 0/1:60:11,49:11:387:49:1733:-138.194,0,-17.105 dDocent_Contig_5906 19 . C A 4531.87 . AB=0.766917;ABP=85.314;AC=4;AF=0.666667;AN=6;AO=144;CIGAR=1X4M;DP=177;DPB=177;DPRA=0;EPP=315.702;EPPR=55.1256;GTI=0;LEN=1;MEANALT=2;MQM=60;MQMR=60;NS=3;NUMALT=2;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=5568;QR=934;RO=24;RPL=0;RPP=315.702;RPPR=55.1256;RPR=144;RUN=1;SAF=144;SAP=315.702;SAR=0;SRF=24;SRP=55.1256;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|1:101:11,5,83:11:428:5,83:196,3187:-258.293,-246.337,-280.005,0,-19.9245,-10.2057 0|1:32:11,2,19:11:432:2,19:76,763:-59.5804,-56.6607,-91.5873,0,-29.3114,-29.8229 1|1:44:2,0,42:2:74:0,42:0,1618:-138.836,-139.439,-145.492,-6.21955,-12.6433,0 dDocent_Contig_5907 19 . T A 66.3191 . AB=0.15;ABP=45.5712;AC=2;AF=0.333333;AN=6;AO=7;CIGAR=1X;DP=55;DPB=55;DPRA=0;EPP=18.2106;EPPR=107.241;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=279;QR=1731;RO=48;RPL=0;RPP=18.2106;RPPR=107.241;RPR=7;RUN=1;SAF=7;SAP=18.2106;SAR=0;SRF=48;SRP=107.241;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:15:14,1:14:509:1:41:0,-0.420883,-42.0479 0/1:26:22,4:22:808:4:162:-7.14018,0,-65.2166 0/1:14:12,2:12:414:2:76:-2.99984,0,-33.3666 dDocent_Contig_5908 9 . G A 54.7414 . AB=0.25;ABP=9.52472;AC=1;AF=0.166667;AN=6;AO=3;CIGAR=1X;DP=30;DPB=30;DPRA=1.33333;EPP=9.52472;EPPR=61.6401;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=0;PAIREDR=0.888889;PAO=0;PQA=0;PQR=0;PRO=0;QA=117;QR=1025;RO=27;RPL=0;RPP=9.52472;RPPR=61.6401;RPR=3;RUN=1;SAF=3;SAP=9.52472;SAR=0;SRF=27;SRP=61.6401;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:6:6,0:6:224:0:0:0,-1.80618,-20.5178 0/1:12:9,3:9:341:3:117:-7.29802,0,-27.4317 0/0:12:12,0:12:460:0:0:0,-3.61236,-41.7501 dDocent_Contig_5909 15 . T C 738.213 . AB=0.358025;ABP=17.1919;AC=2;AF=0.333333;AN=6;AO=29;CIGAR=1X3M1X;DP=96;DPB=97.6;DPRA=2.7;EPP=65.983;EPPR=146.327;GTI=0;LEN=1;MEANALT=1.5;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=1124;QR=2585;RO=66;RPL=0;RPP=65.983;RPPR=146.327;RPR=29;RUN=1;SAF=29;SAP=65.983;SAR=0;SRF=66;SRP=146.327;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|1:66:42,24:42:1648:24:942:-65.2201,0,-128.694 0|1:15:9,5:9:355:5:182:-12.1241,0,-27.6971 0|0:15:15,0:15:582:0:0:0,-4.51545,-52.7151 dDocent_Contig_5910 75 . T C 217.399 . AB=0.333333;ABP=10.2485;AC=2;AF=0.333333;AN=6;AO=10;CIGAR=1X;DP=39;DPB=39;DPRA=1.66667;EPP=24.725;EPPR=65.983;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=373;QR=1052;RO=29;RPL=10;RPP=24.725;RPPR=65.983;RPR=0;RUN=1;SAF=10;SAP=24.725;SAR=0;SRF=29;SRP=65.983;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:9:9,0:9:320:0:0:0,-2.70927,-29.1413 0/1:19:11,8:11:401:8:299:-21.5454,0,-30.7127 0/1:11:9,2:9:331:2:74:-3.71455,0,-26.8294 dDocent_Contig_5911 22 . G C 9844.85 . AB=0.43722;ABP=18.2788;AC=3;AF=0.5;AN=6;AO=195;CIGAR=1M1X9M;DP=446;DPB=524.273;DPRA=0;EPP=426.447;EPPR=79.0118;GTI=0;LEN=1;MEANALT=7;MQM=60;MQMR=60;NS=3;NUMALT=4;ODDS=0;PAIRED=1;PAIREDR=0.971429;PAO=0;PQA=0;PQR=0;PRO=0;QA=7812;QR=1369;RO=35;RPL=0;RPP=426.447;RPPR=79.0118;RPR=195;RUN=1;SAF=195;SAP=426.447;SAR=0;SRF=35;SRP=79.0118;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|1:234:24,6,83,15,93:24:941:6,83,15,93:234,3057,556,3732:-472.79,-460.78,-536.358,-230.108,-288.257,-282.506,-434.525,-492.674,-262.003,-507.394,-172.521,-230.672,0,-204.417,-221.912 0|1:133:6,2,47,0,69:6:232:2,47,0,69:68,1743,0,2766:-349.648,-345.939,-364.393,-208.858,-222.399,-213.765,-351.454,-364.995,-227.913,-370.51,-123.555,-137.098,0,-142.613,-121.842 0|1:79:5,6,25,9,33:5:196:6,25,9,33:187,940,318,1314:-167.57,-154.069,-168.382,-92.1028,-93.2186,-100.697,-143.186,-144.299,-82.3347,-156.595,-60.8643,-61.9817,0,-51.0958,-67.052 dDocent_Contig_5912 118 . T C 34.1096 . AB=0.16;ABP=28.1125;AC=1;AF=0.166667;AN=6;AO=4;CIGAR=2X;DP=74;DPB=74;DPRA=1.02041;EPP=11.6962;EPPR=155.013;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=138;QR=2396;RO=70;RPL=0;RPP=11.6962;RPPR=155.013;RPR=4;RUN=1;SAF=0;SAP=11.6962;SAR=4;SRF=0;SRP=155.013;SRR=70;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|0:39:39,0:39:1333:0:0:0,-11.7402,-120.268 0|0:10:10,0:10:331:0:0:0,-3.0103,-30.1118 0|1:25:21,4:21:732:4:138:-5.2347,0,-58.6775 dDocent_Contig_5915 24 . A C 52.7318 . AB=0.263158;ABP=12.2676;AC=1;AF=0.166667;AN=6;AO=5;CIGAR=1X;DP=41;DPB=41;DPRA=1.72727;EPP=13.8677;EPPR=81.1833;GTI=0;LEN=1;MEANALT=1;MQM=28.2;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=0;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=172;QR=1429;RO=36;RPL=0;RPP=13.8677;RPPR=81.1833;RPR=5;RUN=1;SAF=0;SAP=13.8677;SAR=5;SRF=36;SRP=81.1833;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:19:14,5:14:565:5:172:-6.79604,0,-45.4718 0/0:6:6,0:6:232:0:0:0,-1.80618,-21.2467 0/0:16:16,0:16:632:0:0:0,-4.81648,-57.2117 dDocent_Contig_5916 107 . N C 399.983 . AB=0;ABP=0;AC=6;AF=1;AN=6;AO=13;CIGAR=1X;DP=13;DPB=13;DPRA=0;EPP=31.2394;EPPR=0;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=0;NS=3;NUMALT=1;ODDS=1.69407e-21;PAIRED=1;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=428;QR=0;RO=0;RPL=0;RPP=31.2394;RPPR=0;RPR=13;RUN=1;SAF=0;SAP=31.2394;SAR=13;SRF=0;SRP=0;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 1/1:1:0,1:0:0:1:35:-3.49863,-0.30103,0 1/1:8:0,8:0:0:8:254:-23.169,-2.40824,0 1/1:4:0,4:0:0:4:139:-12.8527,-1.20412,0 dDocent_Contig_5917 8 . A G 191.636 . AB=0.185185;ABP=26.2531;AC=2;AF=0.333334;AN=6;AO=5;CIGAR=1X1M;DP=45;DPB=45;DPRA=0.75;EPP=13.8677;EPPR=76.8404;GTI=0;LEN=1;MEANALT=1.5;MQM=60;MQMR=60;NS=3;NUMALT=2;ODDS=0;PAIRED=0.4;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=188;QR=1286;RO=34;RPL=0;RPP=13.8677;RPPR=76.8404;RPR=5;RUN=1;SAF=5;SAP=13.8677;SAR=0;SRF=34;SRP=76.8404;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|1:12:9,0,3:9:341:0,3:0,110:-6.64774,-9.35701,-37.3242,0,-28.3367,-27.4336 0|1:15:7,6,2:7:271:6,2:222,78:-16.0388,0,-20.454,-11.7292,-15.8478,-33.3988 0|0:18:18,0,0:18:674:0,0:0,0:0,-5.41854,-60.9897,-5.41854,-60.9897,-60.9897 dDocent_Contig_5918 21 . C T 145.214 . AB=0.114094;ABP=195.747;AC=1;AF=0.166667;AN=6;AO=22;CIGAR=1X;DP=277;DPB=277;DPRA=0;EPP=50.7827;EPPR=556.736;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=874;QR=10145;RO=255;RPL=0;RPP=50.7827;RPPR=556.736;RPR=22;RUN=1;SAF=22;SAP=50.7827;SAR=0;SRF=255;SRP=556.736;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:149:132,17:132:5222:17:673:-16.0443,0,-424.981 0/0:64:60,4:60:2427:4:160:0,-4.48249,-203.786 0/0:64:63,1:63:2496:1:41:0,-15.1714,-220.689 dDocent_Contig_5919 57 . C T 4774.99 . AB=0.0689655;ABP=190.206;AC=0;AF=0;AN=6;AO=8;CIGAR=1X3M2X;DP=263;DPB=263;DPRA=0;EPP=20.3821;EPPR=139.813;GTI=0;LEN=1;MEANALT=3;MQM=60;MQMR=60;NS=3;NUMALT=2;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=248;QR=2076;RO=63;RPL=8;RPP=20.3821;RPPR=139.813;RPR=0;RUN=1;SAF=8;SAP=20.3821;SAR=0;SRF=63;SRP=139.813;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|0:116:25,8,82:25:844:8,82:248,2689:-209.735,-197.355,-263.359,0,-48.5267,-43.7423 0|0:78:24,0,52:24:781:0,52:0,1712:-131.154,-138.379,-201.423,0,-63.0415,-47.3879 0|0:69:14,0,55:14:451:0,55:0,1807:-142.134,-146.348,-182.711,0,-36.6867,-20.13 dDocent_Contig_5920 98 . N A 68.1878 . AB=0;ABP=0;AC=2;AF=1;AN=2;AO=3;CIGAR=1X;DP=3;DPB=3;DPRA=0;EPP=9.52472;EPPR=0;GTI=0;LEN=1;MEANALT=1;MQM=40;MQMR=0;NS=1;NUMALT=1;ODDS=6.68461;PAIRED=1;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=75;QR=0;RO=0;RPL=3;RPP=9.52472;RPPR=0;RPR=0;RUN=1;SAF=3;SAP=9.52472;SAR=0;SRF=0;SRP=0;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 1/1:3:0,3:0:0:3:75:-6.81823,-0.90309,0 ./.:.:.:.:.:.:.:. ./.:.:.:.:.:.:.:. dDocent_Contig_5921 8 . A T 298.805 . AB=0.27451;ABP=25.534;AC=2;AF=0.333333;AN=6;AO=18;CIGAR=1X;DP=171;DPB=171;DPRA=0;EPP=42.0968;EPPR=335.246;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=0;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=690;QR=5811;RO=153;RPL=0;RPP=42.0968;RPPR=335.246;RPR=18;RUN=1;SAF=18;SAP=42.0968;SAR=0;SRF=153;SRP=335.246;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:120:116,4:116:4419:4:156:0,-21.7063,-383.36 0/1:22:11,11:11:414:11:421:-31.6199,0,-30.9861 0/1:29:26,3:26:978:3:113:-1.8091,0,-79.5981 dDocent_Contig_5922 37 . T C 1894.23 . AB=0.679245;ABP=17.8009;AC=4;AF=0.666667;AN=6;AO=60;CIGAR=1X;DP=80;DPB=80;DPRA=0;EPP=133.299;EPPR=44.2683;GTI=0;LEN=1;MEANALT=1.33333;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=2395;QR=734;RO=19;RPL=0;RPP=133.299;RPPR=44.2683;RPR=60;RUN=1;SAF=60;SAP=133.299;SAR=0;SRF=19;SRP=44.2683;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 1/1:27:2,24:2:80:24:975:-80.4548,-0.634558,0 0/1:33:10,23:10:393:23:897:-71.0952,0,-25.7909 0/1:20:7,13:7:261:13:523:-41.3953,0,-17.8236 dDocent_Contig_5923 45 . G T 105.185 . AB=0.1875;ABP=30.1537;AC=2;AF=0.333333;AN=6;AO=6;CIGAR=1X;DP=41;DPB=41;DPRA=1.77778;EPP=16.0391;EPPR=79.0118;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=242;QR=1374;RO=35;RPL=0;RPP=16.0391;RPPR=79.0118;RPR=6;RUN=1;SAF=6;SAP=16.0391;SAR=0;SRF=35;SRP=79.0118;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:22:17,5:17:648:5:203:-12.0304,0,-52.0129 0/1:10:9,1:9:368:1:39:-0.886264,0,-30.4751 0/0:9:9,0:9:358:0:0:0,-2.70927,-32.5825 dDocent_Contig_5925 124 . G A 2446.94 . AB=0.635714;ABP=25.4075;AC=3;AF=0.5;AN=6;AO=89;CIGAR=1X2M;DP=140;DPB=140;DPRA=0;EPP=196.271;EPPR=94.2121;GTI=0;LEN=1;MEANALT=1.33333;MQM=60;MQMR=60;NS=3;NUMALT=2;ODDS=1.38778e-17;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=3212;QR=1458;RO=42;RPL=0;RPP=196.271;RPPR=94.2121;RPR=89;RUN=1;SAF=0;SAP=196.271;SAR=89;SRF=0;SRP=94.2121;SRR=42;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|1:93:17,9,67:17:607:9,67:324,2419:-192.312,-170.993,-217.769,0,-23.0463,-29.315 0|1:18:4,0,14:4:139:0,14:0,509:-40.7308,-41.9349,-53.2324,0,-11.6484,-7.43403 0|1:29:21,0,8:21:712:0,8:0,284:-17.1733,-23.495,-81.2156,0,-58.0711,-55.6628 dDocent_Contig_5926 16 . G A 84.0462 . AB=0.146341;ABP=47.552;AC=2;AF=0.333333;AN=6;AO=8;CIGAR=1X;DP=67;DPB=67;DPRA=0;EPP=20.3821;EPPR=131.127;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=3.46945e-18;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=324;QR=2322;RO=59;RPL=0;RPP=20.3821;RPPR=131.127;RPR=8;RUN=1;SAF=8;SAP=20.3821;SAR=0;SRF=59;SRP=131.127;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:29:24,5:24:955:5:203:-9.92298,0,-77.5217 0/1:12:11,1:11:433:1:40:-0.383319,0,-35.7116 0/0:26:24,2:24:934:2:81:0,-0.141046,-76.6805 dDocent_Contig_5927 42 . T C 88.3657 . AB=0.285714;ABP=8.59409;AC=1;AF=0.166667;AN=6;AO=15;CIGAR=1X;DP=207;DPB=207;DPRA=0;EPP=35.5824;EPPR=419.933;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=0.0666667;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=603;QR=7622;RO=192;RPL=0;RPP=35.5824;RPPR=419.933;RPR=15;RUN=1;SAF=15;SAP=35.5824;SAR=0;SRF=192;SRP=419.933;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:139:129,10:129:5113:10:402:0,-5.3033,-423.514 0/1:14:10,4:10:376:4:161:-10.6605,0,-29.9653 0/0:54:53,1:53:2133:1:40:0,-12.2599,-188.153 dDocent_Contig_5928 45 . G A 109.27 . AB=0.263158;ABP=12.2676;AC=1;AF=0.166667;AN=6;AO=8;CIGAR=1X;DP=81;DPB=81;DPRA=0;EPP=20.3821;EPPR=161.528;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=3.46945e-18;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=320;QR=2893;RO=73;RPL=0;RPP=20.3821;RPPR=161.528;RPR=8;RUN=1;SAF=8;SAP=20.3821;SAR=0;SRF=73;SRP=161.528;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:36:34,2:34:1328:2:78:0,-3.4343,-112.373 0/1:19:14,5:14:567:5:201:-12.7509,0,-45.6518 0/0:26:25,1:25:998:1:41:0,-3.73221,-86.0241 dDocent_Contig_5929 9 . G A 2310.7 . AB=0.1;ABP=30.8051;AC=0;AF=0;AN=6;AO=2;CIGAR=3X;DP=102;DPB=102;DPRA=0;EPP=7.35324;EPPR=48.6112;GTI=0;LEN=1;MEANALT=3;MQM=60;MQMR=60;NS=3;NUMALT=3;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=77;QR=793;RO=21;RPL=0;RPP=7.35324;RPPR=48.6112;RPR=2;RUN=1;SAF=2;SAP=7.35324;SAR=0;SRF=21;SRP=48.6112;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|0:54:9,3,0,42:9:346:3,0,42:104,0,1655:-133.49,-127.75,-155.249,-136.199,-156.153,-164.602,0,-19.9898,-28.4326,-15.7894 0|0:28:5,0,0,23:5:191:0,0,23:0,0,901:-72.9738,-74.479,-90.1475,-74.479,-90.1475,-90.1475,0,-16.0519,-16.0519,-9.12824 0|0:20:7,1,2,10:7:256:1,2,10:40,77,392:-30.1293,-28.9407,-49.544,-25.9153,-43.5223,-46.2163,0,-17.5985,-14.5712,-17.8863 dDocent_Contig_5930 209 . N G 137.609 . AB=0;ABP=0;AC=4;AF=1;AN=4;AO=4;CIGAR=1X;DP=4;DPB=4;DPRA=0;EPP=11.6962;EPPR=0;GTI=0;LEN=1;MEANALT=1;MQM=40;MQMR=0;NS=2;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=150;QR=0;RO=0;RPL=4;RPP=11.6962;RPPR=0;RPR=0;RUN=1;SAF=0;SAP=11.6962;SAR=4;SRF=0;SRP=0;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 1/1:3:0,3:0:0:3:111:-9.81239,-0.90309,0 ./.:.:.:.:.:.:.:. 1/1:1:0,1:0:0:1:39:-3.64612,-0.30103,0 dDocent_Contig_5931 9 . G A 487.854 . AB=0.190789;ABP=129.241;AC=3;AF=0.5;AN=6;AO=29;CIGAR=1X;DP=152;DPB=152;DPRA=0;EPP=65.983;EPPR=270.101;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=59.7317;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=0.837398;PAO=0;PQA=0;PQR=0;PRO=0;QA=1100;QR=4689;RO=123;RPL=0;RPP=65.983;RPPR=270.101;RPR=29;RUN=1;SAF=29;SAP=65.983;SAR=0;SRF=123;SRP=270.101;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:94:82,12:82:3128:12:450:-12.5486,0,-253.14 0/1:24:16,8:16:601:8:307:-20.767,0,-47.2 0/1:34:25,9:25:960:9:343:-20.9927,0,-76.4779 dDocent_Contig_5932 25 . C T 663.082 . AB=0.283019;ABP=46.3578;AC=3;AF=0.5;AN=6;AO=30;CIGAR=1X;DP=106;DPB=106;DPRA=0;EPP=68.1545;EPPR=168.042;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=1141;QR=3058;RO=76;RPL=0;RPP=68.1545;RPPR=168.042;RPR=30;RUN=1;SAF=30;SAP=68.1545;SAR=0;SRF=76;SRP=168.042;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:55:42,13:42:1684:13:475:-26.5195,0,-135.224 0/1:17:12,5:12:487:5:194:-12.7148,0,-39.0642 0/1:34:22,12:22:887:12:472:-32.5967,0,-69.9016 dDocent_Contig_5933 8 . A T 81.5259 . AB=0.114583;ABP=126.875;AC=1;AF=0.166667;AN=6;AO=15;CIGAR=1X;DP=387;DPB=387;DPRA=1.83133;EPP=35.5824;EPPR=808.627;GTI=0;LEN=1;MEANALT=1.5;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=0.994609;PAO=0;PQA=0;PQR=0;PRO=0;QA=584;QR=14170;RO=371;RPL=0;RPP=35.5824;RPPR=808.627;RPR=15;RUN=1;SAF=15;SAP=35.5824;SAR=0;SRF=371;SRP=808.627;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:208:203,4:203:7744:4:156:0,-48.0618,-682.419 0/0:83:83,0:83:3180:0:0:0,-24.9855,-286.351 0/1:96:85,11:85:3246:11:428:-9.9765,0,-263.391 dDocent_Contig_5934 167 . G A 159.086 . AB=0.4;ABP=4.31318;AC=1;AF=0.166667;AN=6;AO=6;CIGAR=1X;DP=62;DPB=62;DPRA=0.638298;EPP=16.0391;EPPR=124.613;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=0;PAIREDR=0.767857;PAO=0;PQA=0;PQR=0;PRO=0;QA=243;QR=2257;RO=56;RPL=6;RPP=16.0391;RPPR=124.613;RPR=0;RUN=1;SAF=0;SAP=16.0391;SAR=6;SRF=0;SRP=124.613;SRR=56;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:30:30,0:30:1221:0:0:0,-9.0309,-110.158 0/1:15:9,6:9:353:6:243:-17.7325,0,-27.613 0/0:17:17,0:17:683:0:0:0,-5.11751,-61.798 dDocent_Contig_5935 24 . C G 107.082 . AB=0.125;ABP=110.498;AC=2;AF=0.333333;AN=6;AO=12;CIGAR=1X;DP=130;DPB=130;DPRA=0;EPP=29.068;EPPR=259.244;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=0.974576;PAO=0;PQA=0;PQR=0;PRO=0;QA=484;QR=4755;RO=118;RPL=0;RPP=29.068;RPPR=259.244;RPR=12;RUN=1;SAF=12;SAP=29.068;SAR=0;SRF=118;SRP=259.244;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:63:55,8:55:2214:8:323:-10.4741,0,-180.458 0/1:25:22,3:22:894:3:121:-3.75445,0,-73.24 0/0:42:41,1:41:1647:1:40:0,-8.64758,-144.459 dDocent_Contig_5937 27 . G C 139.777 . AB=0.233333;ABP=21.5402;AC=2;AF=0.333333;AN=6;AO=9;CIGAR=1X;DP=103;DPB=103;DPRA=0;EPP=22.5536;EPPR=207.129;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=368;QR=3717;RO=94;RPL=0;RPP=22.5536;RPPR=207.129;RPR=9;RUN=1;SAF=9;SAP=22.5536;SAR=0;SRF=94;SRP=207.129;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:73:71,2:71:2836:2:82:0,-14.1955,-247.569 0/1:15:10,5:10:396:5:204:-14.2286,0,-31.4838 0/1:15:13,2:13:485:2:82:-3.26423,0,-39.4639 dDocent_Contig_5938 26 . T C 3295.47 . AB=0.775281;ABP=61.5913;AC=5;AF=0.833334;AN=6;AO=99;CIGAR=1X2M;DP=122;DPB=122;DPRA=0;EPP=217.986;EPPR=31.2394;GTI=0;LEN=1;MEANALT=1.66667;MQM=60;MQMR=60;NS=3;NUMALT=2;ODDS=1.38778e-17;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=3909;QR=513;RO=13;RPL=0;RPP=217.986;RPPR=31.2394;RPR=99;RUN=1;SAF=99;SAP=217.986;SAR=0;SRF=13;SRP=31.2394;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|1:44:7,0,37:7:270:0,37:0,1476:-119.842,-121.949,-144.117,0,-22.5555,-11.4173 1|1:45:5,8,32:5:202:8,32:316,1230:-108.773,-84.2741,-98.5219,-9.33958,0,-16.3635 1|1:33:1,2,30:1:41:2,30:81,1203:-104.455,-98.0768,-100.859,-5.64517,-2.35503,0 dDocent_Contig_5939 98 . N A 356.203 . AB=0;ABP=0;AC=2;AF=1;AN=2;AO=11;CIGAR=2X;DP=11;DPB=11;DPRA=0;EPP=26.8965;EPPR=0;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=0;NS=1;NUMALT=1;ODDS=12.2298;PAIRED=1;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=392;QR=0;RO=0;RPL=11;RPP=26.8965;RPPR=0;RPR=0;RUN=1;SAF=11;SAP=26.8965;SAR=0;SRF=0;SRP=0;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 1|1:11:0,11:0:0:11:392:-35.6203,-3.31133,0 .:.:.:.:.:.:.:. .:.:.:.:.:.:.:. dDocent_Contig_5940 44 . C T 95.2485 . AB=0.166667;ABP=37.7539;AC=1;AF=0.166667;AN=6;AO=7;CIGAR=1X;DP=68;DPB=68;DPRA=3.75;EPP=18.2106;EPPR=135.47;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=277;QR=2416;RO=61;RPL=0;RPP=18.2106;RPPR=135.47;RPR=7;RUN=1;SAF=7;SAP=18.2106;SAR=0;SRF=61;SRP=135.47;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:36:30,6:30:1187:6:239:-11.0477,0,-96.276 0/0:8:8,0:8:314:0:0:0,-2.40824,-28.6251 0/0:24:23,1:23:915:1:38:0,-3.42745,-78.8607 dDocent_Contig_5941 12 . G T 88.8552 . AB=0.155556;ABP=49.3833;AC=1;AF=0.166667;AN=6;AO=7;CIGAR=1M1I3M1X;DP=97;DPB=98.6;DPRA=1.73077;EPP=18.2106;EPPR=196.271;GTI=0;LEN=1;MEANALT=1;MQM=57.1429;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=0;PAIREDR=0.47191;PAO=0;PQA=0;PQR=0;PRO=0;QA=263;QR=3436;RO=89;RPL=0;RPP=18.2106;RPPR=196.271;RPR=7;RUN=1;SAF=7;SAP=18.2106;SAR=0;SRF=89;SRP=196.271;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|1:45:38,7:38:1484:7:263:-10.4084,0,-120.279 0|0:20:19,0:19:724:0:0:0,-5.71957,-65.0908 0|0:32:32,0:32:1228:0:0:0,-9.63296,-110.81 dDocent_Contig_5942 7 . A C 2431.37 . AB=0.126984;ABP=155.289;AC=0;AF=0;AN=6;AO=16;CIGAR=1X1M1X2M1X3M1X3M2X1M1X2M;DP=126;DPB=125.842;DPRA=0;EPP=37.7539;EPPR=37.7539;GTI=0;LEN=1;MEANALT=5;MQM=19;MQMR=60;NS=3;NUMALT=5;ODDS=1.38778e-17;PAIRED=0;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=304;QR=616;RO=16;RPL=0;RPP=37.7539;RPPR=37.7539;RPR=16;RUN=1;SAF=16;SAP=37.7539;SAR=0;SRF=16;SRP=37.7539;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|0:49:10,5,3,3,3,23:10:384:5,3,3,3,23:200,57,121,123,922:-73.0111,-66.5367,-96.5512,-72.6161,-94.6504,-103.232,-66.0431,-88.0799,-94.1593,-96.664,-65.8646,-87.9015,-93.9808,-87.4112,-96.4855,0,-22.0715,-28.1532,-21.5689,-21.39,-24.6295 0|0:38:5,0,2,0,0,29:5:192:0,2,0,0,29:0,38,0,0,1168:-94.8717,-96.3768,-112.137,-94.1104,-109.869,-109.267,-96.3768,-112.137,-109.869,-112.137,-96.3768,-112.137,-109.869,-112.137,-112.137,0,-15.8213,-13.5903,-15.8213,-15.8213,-7.09144 0|0:39:1,0,11,0,7,19:1:40:0,11,0,7,19:0,209,0,276,748:-80.777,-81.078,-84.3752,-68.5974,-71.893,-68.5817,-81.078,-84.3752,-71.893,-84.3752,-58.355,-61.6531,-49.1839,-61.6531,-59.5459,-19.4789,-22.7816,-10.3506,-22.7816,0,-17.062 dDocent_Contig_5943 78 . C T 430.705 . AB=0.19375;ABP=133.353;AC=3;AF=0.5;AN=6;AO=31;CIGAR=1X;DP=160;DPB=160;DPRA=0;EPP=70.3259;EPPR=283.13;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=1064;QR=4406;RO=129;RPL=31;RPP=70.3259;RPPR=283.13;RPR=0;RUN=1;SAF=31;SAP=70.3259;SAR=0;SRF=129;SRP=283.13;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:99:85,14:85:2906:14:472:-13.0003,0,-231.979 0/1:25:17,8:17:592:8:279:-17.9231,0,-46.0813 0/1:36:27,9:27:908:9:313:-17.67,0,-71.1905 dDocent_Contig_5944 27 . G A 1170.87 . AB=0.182584;ABP=314.556;AC=3;AF=0.5;AN=6;AO=65;CIGAR=1X;DP=356;DPB=356;DPRA=0;EPP=144.156;EPPR=634.909;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=2543;QR=11618;RO=291;RPL=0;RPP=144.156;RPPR=634.909;RPR=65;RUN=1;SAF=65;SAP=144.156;SAR=0;SRF=291;SRP=634.909;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:180:140,40:140:5626:40:1571:-87.4339,0,-451.96 0/1:64:51,13:51:2007:13:517:-27.6118,0,-161.56 0/1:112:100,12:100:3985:12:455:-7.56437,0,-324.918 dDocent_Contig_5946 16 . G T 758.544 . AB=0.466667;ABP=3.58936;AC=3;AF=0.5;AN=6;AO=28;CIGAR=2X;DP=60;DPB=60;DPRA=0;EPP=63.8115;EPPR=70.3259;GTI=0;LEN=1;MEANALT=1.33333;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=1094;QR=1199;RO=31;RPL=0;RPP=63.8115;RPPR=70.3259;RPR=28;RUN=1;SAF=28;SAP=63.8115;SAR=0;SRF=31;SRP=70.3259;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|1:28:11,16:11:426:16:635:-48.9772,0,-30.1832 0|1:17:8,9:8:307:9:345:-26.2844,0,-22.8697 0|1:15:12,3:12:466:3:114:-6.11565,0,-37.7722 dDocent_Contig_5947 88 . A T 2442.99 . AB=0.674074;ABP=38.542;AC=3;AF=0.5;AN=6;AO=91;CIGAR=1X;DP=135;DPB=135;DPRA=0;EPP=200.614;EPPR=98.5551;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=3217;QR=1498;RO=44;RPL=91;RPP=200.614;RPPR=98.5551;RPR=0;RUN=1;SAF=91;SAP=200.614;SAR=0;SRF=44;SRP=98.5551;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:92:24,68:24:815:68:2407:-189.193,0,-45.9694 0/1:19:12,7:12:406:7:248:-16.9449,0,-31.1459 0/1:24:8,16:8:277:16:562:-43.6841,0,-18.0423 dDocent_Contig_5948 45 . T G 231.99 . AB=0.13245;ABP=180.194;AC=3;AF=0.5;AN=6;AO=20;CIGAR=1X;DP=151;DPB=151;DPRA=0;EPP=46.4397;EPPR=287.473;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=811;QR=5165;RO=131;RPL=0;RPP=46.4397;RPPR=287.473;RPR=20;RUN=1;SAF=20;SAP=46.4397;SAR=0;SRF=131;SRP=287.473;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:96:86,10:86:3431:10:405:-7.91116,0,-279.929 0/1:18:16,2:16:620:2:82:-2.36114,0,-50.7088 0/1:37:29,8:29:1114:8:324:-18.3907,0,-89.3995 dDocent_Contig_5949 83 . A G 42.2399 . AB=0.222222;ABP=15.074;AC=1;AF=0.166667;AN=6;AO=9;CIGAR=1X;DP=110;DPB=110;DPRA=0;EPP=22.5536;EPPR=222.329;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=3.46945e-18;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=293;QR=3485;RO=101;RPL=9;RPP=22.5536;RPPR=222.329;RPR=0;RUN=1;SAF=9;SAP=22.5536;SAR=0;SRF=101;SRP=222.329;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:48:45,3:45:1546:3:99:0,-5.21232,-130.196 0/0:44:42,2:42:1449:2:70:0,-6.59792,-124.056 0/1:18:14,4:14:490:4:124:-6.04788,0,-39.0141 dDocent_Contig_5950 22 . T A 611.896 . AB=0.218045;ABP=94.8489;AC=3;AF=0.5;AN=6;AO=29;CIGAR=1X;DP=133;DPB=133;DPRA=0;EPP=65.983;EPPR=228.843;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=1174;QR=4152;RO=104;RPL=0;RPP=65.983;RPPR=228.843;RPR=29;RUN=1;SAF=29;SAP=65.983;SAR=0;SRF=104;SRP=228.843;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:83:61,22:61:2414:22:887:-55.1491,0,-192.424 0/1:22:19,3:19:766:3:123:-4.84213,0,-62.6354 0/1:28:24,4:24:972:4:164:-6.72106,0,-79.3479 dDocent_Contig_5951 33 . T A 59.6926 . AB=0.181818;ABP=22.3561;AC=1;AF=0.166667;AN=6;AO=4;CIGAR=1X2M1X;DP=80;DPB=80;DPRA=0.758621;EPP=11.6962;EPPR=168.042;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=156;QR=3032;RO=76;RPL=0;RPP=11.6962;RPPR=168.042;RPR=4;RUN=1;SAF=4;SAP=11.6962;SAR=0;SRF=76;SRP=168.042;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|0:47:47,0:47:1862:0:0:0,-14.1484,-167.797 0|1:22:18,4:18:726:4:156:-7.79317,0,-59.0416 0|0:11:11,0:11:444:0:0:0,-3.31133,-40.3162 dDocent_Contig_5953 30 . C T 6485.76 . AB=0.528117;ABP=5.81888;AC=3;AF=0.5;AN=6;AO=216;CIGAR=1X2M;DP=409;DPB=409;DPRA=0;EPP=472.048;EPPR=326.56;GTI=0;LEN=1;MEANALT=2.33333;MQM=60;MQMR=60;NS=3;NUMALT=2;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=8498;QR=5875;RO=149;RPL=0;RPP=472.048;RPPR=326.56;RPR=216;RUN=1;SAF=216;SAP=472.048;SAR=0;SRF=149;SRP=326.56;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|1:223:60,33,129:60:2349:33,129:1315,5084:-400.167,-309.946,-493.141,0,-84.8421,-154.294 0|1:61:26,7,28:26:1027:7,28:275,1089:-81.6491,-66.8563,-149.26,0,-61.8914,-76.0808 0|1:125:63,3,59:63:2499:3,59:122,2325:-172.283,-181.184,-385.987,0,-195.632,-187.935 dDocent_Contig_5954 98 . N A 1269.3 . AB=0;ABP=0;AC=6;AF=1;AN=6;AO=41;CIGAR=1X;DP=41;DPB=41;DPRA=0;EPP=92.0407;EPPR=0;GTI=0;LEN=1;MEANALT=1;MQM=59.5122;MQMR=0;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=1394;QR=0;RO=0;RPL=41;RPP=92.0407;RPPR=0;RPR=0;RUN=1;SAF=41;SAP=92.0407;SAR=0;SRF=0;SRP=0;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 1/1:14:0,14:0:0:14:459:-41.5172,-4.21442,0 1/1:10:0,10:0:0:10:344:-31.2929,-3.0103,0 1/1:17:0,17:0:0:17:591:-53.5176,-5.11751,0 dDocent_Contig_5955 19 . G A 450.451 . AB=0.105263;ABP=28.7251;AC=0;AF=0;AN=6;AO=2;CIGAR=1X2M2I1X;DP=69;DPB=80;DPRA=0;EPP=7.35324;EPPR=105.07;GTI=0;LEN=1;MEANALT=2;MQM=60;MQMR=60;NS=3;NUMALT=2;ODDS=0;PAIRED=0;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=76;QR=1803;RO=47;RPL=0;RPP=7.35324;RPPR=105.07;RPR=2;RUN=1;SAF=2;SAP=7.35324;SAR=0;SRF=47;SRP=105.07;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|0:19:11,2,6:11:432:2,6:76,236:-16.1105,-13.1927,-48.1203,0,-29.3102,-33.7346 0|0:31:23,0,8:23:880:0,8:0,304:-18.3837,-25.3074,-97.5145,0,-72.5874,-70.1791 0|0:19:13,0,6:13:491:0,6:0,238:-16.0737,-19.9871,-60.2143,0,-40.6175,-38.8114 dDocent_Contig_5956 13 . C T 5532.27 . AB=0.0562771;ABP=793.107;AC=0;AF=0;AN=6;AO=26;CIGAR=1X1M1X;DP=462;DPB=460.667;DPRA=0;EPP=59.4686;EPPR=400.39;GTI=0;LEN=1;MEANALT=7;MQM=60;MQMR=60;NS=3;NUMALT=3;ODDS=5.55112e-17;PAIRED=1;PAIREDR=0.289617;PAO=0;PQA=0;PQR=0;PRO=0;QA=1026;QR=7184;RO=183;RPL=0;RPP=59.4686;RPPR=400.39;RPR=26;RUN=1;SAF=26;SAP=59.4686;SAR=0;SRF=183;SRP=400.39;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|0:212:70,17,17,92:70:2726:17,17,92:668,680,3637:-278.2,-244.334,-463.231,-243.257,-412.333,-462.154,0,-169.074,-167.997,-196.319 0|0:141:87,2,7,31:87:3417:2,7,31:78,268,1181:-70.6521,-90.4297,-370.854,-74.8502,-349.465,-353.77,0,-274.613,-259.034,-271.693 0|0:109:26,7,4,66:26:1041:7,4,66:280,159,2643:-209.897,-194.659,-278.31,-204.633,-267.326,-289.187,0,-62.6923,-72.6663,-65.8891 dDocent_Contig_5957 40 . G A 615.795 . AB=0.431373;ABP=5.09662;AC=2;AF=0.333333;AN=6;AO=22;CIGAR=1X;DP=61;DPB=61;DPRA=2.55;EPP=50.7827;EPPR=87.6977;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=886;QR=1536;RO=39;RPL=0;RPP=50.7827;RPPR=87.6977;RPR=22;RUN=1;SAF=22;SAP=50.7827;SAR=0;SRF=39;SRP=87.6977;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:38:20,18:20:795:18:723:-53.9574,0,-60.4252 0/1:13:9,4:9:360:4:163:-11.145,0,-28.8495 0/0:10:10,0:10:381:0:0:0,-3.0103,-34.6295 dDocent_Contig_5958 108 . C T 287.924 . AB=0.196262;ABP=88.753;AC=3;AF=0.5;AN=6;AO=21;CIGAR=1X;DP=107;DPB=107;DPRA=0;EPP=48.6112;EPPR=189.757;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=6.93889e-18;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=717;QR=2838;RO=86;RPL=0;RPP=48.6112;RPPR=189.757;RPR=21;RUN=1;SAF=0;SAP=48.6112;SAR=21;SRF=0;SRP=189.757;SRR=86;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:61:54,7:54:1784:7:228:-2.47644,0,-142.48 0/1:17:6,11:6:182:11:384:-29.7781,0,-11.5616 0/1:29:26,3:26:872:3:105:-1.06629,0,-70.0603 dDocent_Contig_5959 77 . T G 1053.28 . AB=0.369748;ABP=20.5463;AC=3;AF=0.5;AN=6;AO=44;CIGAR=1X;DP=119;DPB=119;DPRA=0;EPP=98.5551;EPPR=165.871;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=1619;QR=2828;RO=75;RPL=44;RPP=98.5551;RPPR=165.871;RPR=0;RUN=1;SAF=44;SAP=98.5551;SAR=0;SRF=75;SRP=165.871;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:59:37,22:37:1418:22:830:-57.2571,0,-110.14 0/1:15:10,5:10:384:5:160:-10.1935,0,-30.4006 0/1:45:28,17:28:1026:17:629:-43.4002,0,-79.1085 dDocent_Contig_5960 17 . G A 523.238 . AB=0.308824;ABP=24.5973;AC=2;AF=0.333333;AN=6;AO=21;CIGAR=1X;DP=81;DPB=81;DPRA=2.61538;EPP=48.6112;EPPR=133.299;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=840;QR=2297;RO=60;RPL=0;RPP=48.6112;RPPR=133.299;RPR=21;RUN=1;SAF=21;SAP=48.6112;SAR=0;SRF=60;SRP=133.299;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:53:36,17:36:1373:17:679:-45.4869,0,-107.871 0/0:13:13,0:13:486:0:0:0,-3.91339,-44.0715 0/1:15:11,4:11:438:4:161:-10.3598,0,-35.2592 dDocent_Contig_5961 35 . A T 235.518 . AB=0.17284;ABP=78.3148;AC=1;AF=0.166667;AN=6;AO=17;CIGAR=1X;DP=160;DPB=160;DPRA=1.45122;EPP=39.9253;EPPR=311.359;GTI=0;LEN=1;MEANALT=1.5;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=6.93889e-18;PAIRED=0.882353;PAIREDR=0.985915;PAO=0;PQA=0;PQR=0;PRO=0;QA=659;QR=5575;RO=142;RPL=0;RPP=39.9253;RPPR=311.359;RPR=17;RUN=1;SAF=17;SAP=39.9253;SAR=0;SRF=142;SRP=311.359;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:81:66,14:66:2579:14:547:-25.0745,0,-207.762 0/0:38:35,3:35:1375:3:112:0,-0.995419,-113.564 0/0:41:41,0:41:1621:0:0:0,-12.3422,-146.125 dDocent_Contig_5962 27 . G A 699.12 . AB=0.171674;ABP=221.173;AC=3;AF=0.5;AN=6;AO=40;CIGAR=1X;DP=233;DPB=233;DPRA=0;EPP=89.8692;EPPR=422.104;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=0.720207;PAO=0;PQA=0;PQR=0;PRO=0;QA=1606;QR=7620;RO=193;RPL=0;RPP=89.8692;RPPR=422.104;RPR=40;RUN=1;SAF=40;SAP=89.8692;SAR=0;SRF=193;SRP=422.104;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:151:126,25:126:5007:25:1007:-45.4699,0,-405.063 0/1:34:28,6:28:1037:6:245:-12.1945,0,-83.3759 0/1:48:39,9:39:1576:9:354:-17.7705,0,-127.623 dDocent_Contig_5963 17 . G A 194.969 . AB=0.25;ABP=24.725;AC=3;AF=0.5;AN=6;AO=10;CIGAR=1X;DP=40;DPB=40;DPRA=0;EPP=24.725;EPPR=68.1545;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=398;QR=1181;RO=30;RPL=0;RPP=24.725;RPPR=68.1545;RPR=10;RUN=1;SAF=10;SAP=24.725;SAR=0;SRF=30;SRP=68.1545;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:6:5,1:5:201:1:40:-2.1895,0,-16.6647 0/1:22:17,5:17:663:5:199:-11.6659,0,-53.3752 0/1:12:8,4:8:317:4:159:-11.0796,0,-25.2814 dDocent_Contig_5964 37 . C T 38.3337 . AB=0.101266;ABP=112.106;AC=1;AF=0.166667;AN=6;AO=16;CIGAR=1X;DP=285;DPB=285;DPRA=0;EPP=37.7539;EPPR=584.965;GTI=0;LEN=1;MEANALT=1.33333;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=0.988806;PAO=0;PQA=0;PQR=0;PRO=0;QA=642;QR=10766;RO=268;RPL=0;RPP=37.7539;RPPR=584.965;RPR=16;RUN=1;SAF=16;SAP=37.7539;SAR=0;SRF=268;SRP=584.965;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:95:88,6:88:3526:6:238:0,-6.91112,-295.572 0/1:79:71,8:71:2862:8:323:-5.65722,0,-233.891 0/0:111:109,2:109:4378:2:81:0,-25.7286,-386.276 dDocent_Contig_5965 44 . G T 674.343 . AB=0.366197;ABP=14.0512;AC=3;AF=0.5;AN=6;AO=26;CIGAR=1X;DP=71;DPB=71;DPRA=0;EPP=59.4686;EPPR=100.727;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=1036;QR=1778;RO=45;RPL=0;RPP=59.4686;RPPR=100.727;RPR=26;RUN=1;SAF=26;SAP=59.4686;SAR=0;SRF=45;SRP=100.727;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:28:16,12:16:638:12:476:-34.7612,0,-49.326 0/1:24:21,3:21:835:3:118:-3.778,0,-68.2397 0/1:19:8,11:8:305:11:442:-34.4155,0,-22.0847 dDocent_Contig_5966 9 . C A 4812.87 . AB=0.343013;ABP=120.959;AC=3;AF=0.5;AN=6;AO=189;CIGAR=1X;DP=551;DPB=551;DPRA=0;EPP=413.419;EPPR=789.083;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=0.973545;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=7245;QR=13887;RO=362;RPL=0;RPP=413.419;RPPR=789.083;RPR=189;RUN=1;SAF=189;SAP=413.419;SAR=0;SRF=362;SRP=789.083;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:358:241,117:241:9273:117:4485:-295.94,0,-726.488 0/1:70:37,33:37:1420:33:1263:-92.8902,0,-107.01 0/1:123:84,39:84:3194:39:1497:-97.9789,0,-250.581 dDocent_Contig_5967 32 . A T 1142.57 . AB=0.373984;ABP=19.976;AC=3;AF=0.5;AN=6;AO=46;CIGAR=1X;DP=123;DPB=123;DPRA=0;EPP=102.898;EPPR=170.214;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=1731;QR=3043;RO=77;RPL=0;RPP=102.898;RPPR=170.214;RPR=46;RUN=1;SAF=46;SAP=102.898;SAR=0;SRF=77;SRP=170.214;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:83:54,29:54:2139:29:1081:-72.6009,0,-167.713 0/1:19:8,11:8:321:11:419:-32.3424,0,-23.5389 0/1:21:15,6:15:583:6:231:-14.8364,0,-46.4847 dDocent_Contig_5968 13 . A G 1480.1 . AB=0.0985915;ABP=102.378;AC=0;AF=0;AN=6;AO=7;CIGAR=1X2M1X;DP=106;DPB=106;DPRA=0;EPP=18.2106;EPPR=107.241;GTI=0;LEN=1;MEANALT=2;MQM=60;MQMR=60;NS=3;NUMALT=2;ODDS=0;PAIRED=0;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=278;QR=1872;RO=48;RPL=0;RPP=18.2106;RPPR=107.241;RPR=7;RUN=1;SAF=7;SAP=18.2106;SAR=0;SRF=48;SRP=107.241;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|0:48:12,4,32:12:471:4,32:157,1286:-102.365,-93.0669,-130.597,0,-25.825,-29.1037 0|0:35:27,0,8:27:1054:0,8:0,313:-17.997,-26.1248,-112.768,0,-87.0336,-84.6254 0|0:23:9,3,11:9:347:3,11:121,436:-33.1709,-25.9044,-53.4885,0,-18.5001,-25.1674 dDocent_Contig_5969 33 . T A 8529.6 . AB=0.0573248;ABP=537.469;AC=0;AF=0;AN=6;AO=18;CIGAR=1X2M1I3M;DP=703;DPB=767.5;DPRA=0;EPP=42.0968;EPPR=687.024;GTI=0;LEN=1;MEANALT=4.5;MQM=60;MQMR=60;NS=3;NUMALT=3;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=697;QR=12327;RO=315;RPL=0;RPP=42.0968;RPPR=687.024;RPR=18;RUN=1;SAF=18;SAP=42.0968;SAR=0;SRF=315;SRP=687.024;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|0:389:194,0,21,173:194:7586:0,21,173:0,823,6742:-495.668,-554.068,-1177.75,-486.396,-1110.08,-1103.76,0,-623.684,-556.012,-571.606 0|0:124:46,5,27,43:46:1793:5,27,43:189,1066,1678:-124.08,-122.437,-268.299,-50.2101,-182.088,-189.451,0,-131.877,-59.6506,-134.424 0|0:190:75,13,18,82:75:2948:13,18,82:508,714,3181:-238.735,-219.549,-458.122,-202.539,-403.263,-439.608,0,-200.721,-183.712,-217.799 dDocent_Contig_5970 26 . T C 314.794 . AB=0.112805;ABP=430.128;AC=2;AF=0.333333;AN=6;AO=40;CIGAR=1X;DP=500;DPB=500;DPRA=0;EPP=89.8692;EPPR=1001.89;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=59.963;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=0.997826;PAO=0;PQA=0;PQR=0;PRO=0;QA=1601;QR=18310;RO=460;RPL=0;RPP=89.8692;RPPR=1001.89;RPR=40;RUN=1;SAF=40;SAP=89.8692;SAR=0;SRF=460;SRP=1001.89;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:266:239,27:239:9480:27:1095:-18.7607,0,-772.491 0/1:62:52,10:52:2072:10:384:-16.2416,0,-167.999 0/0:172:169,3:169:6758:3:122:0,-40.4047,-596.535 dDocent_Contig_5971 53 . C T 705.446 . AB=0.240602;ABP=80.7425;AC=2;AF=0.333333;AN=6;AO=35;CIGAR=5M1X2M;DP=176;DPB=176.25;DPRA=0;EPP=79.0118;EPPR=304.845;GTI=0;LEN=1;MEANALT=1.33333;MQM=60;MQMR=60;NS=3;NUMALT=2;ODDS=0;PAIRED=1;PAIREDR=0.992806;PAO=0;PQA=0;PQR=0;PRO=0;QA=1372;QR=5365;RO=139;RPL=35;RPP=79.0118;RPPR=304.845;RPR=0;RUN=1;SAF=35;SAP=79.0118;SAR=0;SRF=139;SRP=304.845;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|1:96:73,0,23:73:2827:0,23:0,896:-52.0361,-74.0113,-306.232,0,-232.609,-225.686 0|1:37:26,2,9:26:992:2,9:74,362:-22.0314,-23.8101,-104.572,0,-75.3367,-78.6805 0|0:43:40,0,3:40:1546:0,3:0,114:0,-12.0412,-139.019,-2.3142,-129.673,-128.769 dDocent_Contig_5972 29 . A G 223.858 . AB=0.164557;ABP=80.2213;AC=0;AF=0;AN=6;AO=13;CIGAR=2X;DP=103;DPB=103;DPRA=0;EPP=31.2394;EPPR=165.871;GTI=0;LEN=1;MEANALT=2;MQM=60;MQMR=60;NS=3;NUMALT=2;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=487;QR=2983;RO=75;RPL=0;RPP=31.2394;RPPR=165.871;RPR=13;RUN=1;SAF=13;SAP=31.2394;SAR=0;SRF=75;SRP=165.871;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|0:55:37,9,9:37:1477:9,9:333,352:-17.8091,-1.72789,-120.673,0,-94.4476,-118.962 0|0:24:16,4,4:16:631:4,4:154,156:-8.00808,-0.182837,-50.8949,0,-39.2778,-50.716 0|0:24:22,0,2:22:875:0,2:0,81:-0.461014,-7.08367,-79.1179,0,-72.4381,-71.836 dDocent_Contig_5973 37 . G A 64.2027 . AB=0.14;ABP=59.2949;AC=1;AF=0.166667;AN=6;AO=16;CIGAR=1X;DP=186;DPB=186;DPRA=0;EPP=37.7539;EPPR=372.161;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=0.875;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=616;QR=6699;RO=170;RPL=0;RPP=37.7539;RPPR=372.161;RPR=16;RUN=1;SAF=16;SAP=37.7539;SAR=0;SRF=170;SRP=372.161;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:103:95,8:95:3765:8:321:0,-1.74848,-309.604 0/0:33:32,1:32:1241:1:40:0,-5.93831,-107.965 0/1:50:43,7:43:1693:7:255:-8.24415,0,-137.546 dDocent_Contig_5974 15 . A C 43.1603 . AB=0.368421;ABP=8.7247;AC=1;AF=0.166667;AN=6;AO=25;CIGAR=1M3I1X;DP=118;DPB=155.5;DPRA=0;EPP=57.2971;EPPR=204.957;GTI=0;LEN=1;MEANALT=1;MQM=14.08;MQMR=60;NS=3;NUMALT=1;ODDS=3.46945e-18;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=998;QR=3714;RO=93;RPL=0;RPP=57.2971;RPPR=204.957;RPR=25;RUN=1;SAF=25;SAP=57.2971;SAR=0;SRF=93;SRP=204.957;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|1:38:24,14:24:957:14:563:-5.83877,0,-74.9937 0|0:29:24,5:24:958:5:196:0,-1.07476,-78.8691 0|0:51:45,6:45:1799:6:239:0,-8.7566,-155.53 dDocent_Contig_5975 39 . T C 5308.61 . AB=0.64898;ABP=50.242;AC=4;AF=0.666667;AN=6;AO=159;CIGAR=4M1X3M;DP=245;DPB=247.875;DPRA=0;EPP=348.274;EPPR=74.6689;GTI=0;LEN=1;MEANALT=4;MQM=60;MQMR=60;NS=3;NUMALT=3;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=6240;QR=1292;RO=33;RPL=0;RPP=348.274;RPPR=74.6689;RPR=159;RUN=1;SAF=159;SAP=348.274;SAR=0;SRF=33;SRP=74.6689;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 1|1:98:7,1,17,73:7:274:1,17,73:33,676,2879:-267.882,-267.322,-289.55,-214.331,-234.193,-231.743,-33.138,-53.0012,0,-33.6916 0|1:66:16,14,5,31:16:629:14,5,31:546,200,1218:-95.3625,-55.302,-102.826,-83.703,-90.565,-133.937,0,-6.86316,-35.2629,-42.4074 0|1:81:10,8,5,55:10:389:8,5,55:278,191,2143:-173.139,-153.559,-183.12,-160.481,-169.86,-190.945,0,-9.39651,-16.3105,-15.4264 dDocent_Contig_5976 136 . T C 33.8941 . AB=0.181818;ABP=22.3561;AC=1;AF=0.166667;AN=6;AO=6;CIGAR=1X;DP=100;DPB=100;DPRA=0.970588;EPP=16.0391;EPPR=207.129;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=196;QR=3241;RO=94;RPL=0;RPP=16.0391;RPPR=207.129;RPR=6;RUN=1;SAF=0;SAP=16.0391;SAR=6;SRF=0;SRP=207.129;SRR=94;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:34:34,0:34:1162:0:0:0,-10.235,-104.878 0/1:22:18,4:18:606:4:128:-5.21315,0,-48.2324 0/0:44:42,2:42:1473:2:68:0,-6.78744,-126.403 dDocent_Contig_5977 21 . A G 88.9019 . AB=0.0692308;ABP=212.541;AC=0;AF=0;AN=6;AO=13;CIGAR=2M1X6M;DP=491;DPB=494.778;DPRA=1.11513;EPP=31.2394;EPPR=997.545;GTI=0;LEN=1;MEANALT=2.5;MQM=59.3846;MQMR=60;NS=3;NUMALT=2;ODDS=0;PAIRED=0;PAIREDR=0.997817;PAO=0;PQA=0;PQR=0;PRO=0;QA=522;QR=18010;RO=458;RPL=0;RPP=31.2394;RPPR=997.545;RPR=13;RUN=1;SAF=13;SAP=31.2394;SAR=0;SRF=458;SRP=997.545;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|0:209:204,1,4:204:8029:1,4:41,163:0,-58.0255,-718.187,-47.9648,-705.041,-707.221 0|0:130:107,13,9:107:4213:13,9:521,359:-10.7141,0,-342.66,-13.3753,-317.024,-357.238 0|0:152:147,3,0:147:5768:3,0:108,0:0,-35.2926,-509.009,-44.2514,-509.912,-518.723 dDocent_Contig_5979 28 . A T 82.0441 . AB=0.25;ABP=11.6962;AC=1;AF=0.166667;AN=6;AO=9;CIGAR=1X;DP=136;DPB=136;DPRA=0;EPP=3.25157;EPPR=274.444;GTI=0;LEN=1;MEANALT=1.33333;MQM=51.4444;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=0;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=348;QR=4972;RO=125;RPL=0;RPP=22.5536;RPPR=274.444;RPR=9;RUN=1;SAF=4;SAP=3.25157;SAR=5;SRF=125;SRP=274.444;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:74:73,1:73:2902:1:40:0,-20.1816,-259.175 0/1:16:12,4:12:486:4:162:-10.0273,0,-39.2754 0/0:46:40,4:40:1584:4:146:0,-0.160847,-129.382 dDocent_Contig_5980 34 . A T 471.042 . AB=0.256098;ABP=45.3805;AC=1;AF=0.166667;AN=6;AO=21;CIGAR=1X;DP=131;DPB=131;DPRA=3.34694;EPP=48.6112;EPPR=241.872;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=811;QR=4240;RO=110;RPL=0;RPP=48.6112;RPPR=241.872;RPR=21;RUN=1;SAF=21;SAP=48.6112;SAR=0;SRF=110;SRP=241.872;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:82:61,21:61:2345:21:811:-48.6271,0,-186.568 0/0:9:9,0:9:345:0:0:0,-2.70927,-31.4068 0/0:40:40,0:40:1550:0:0:0,-12.0412,-139.765 dDocent_Contig_5981 39 . T C 7419.12 . AB=0.451448;ABP=15.0292;AC=3;AF=0.5;AN=6;AO=265;CIGAR=1X;DP=587;DPB=587;DPRA=0;EPP=578.45;EPPR=697.881;GTI=0;LEN=1;MEANALT=1.66667;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=2.77556e-17;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=10265;QR=11017;RO=320;RPL=0;RPP=578.45;RPPR=697.881;RPR=265;RUN=1;SAF=265;SAP=578.45;SAR=0;SRF=320;SRP=697.881;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:280:143,136:143:4929:136:5305:-393.209,0,-359.629 0/1:126:61,64:61:2079:64:2429:-180.772,0,-149.363 0/1:181:116,65:116:4009:65:2531:-173.454,0,-306.497 dDocent_Contig_5982 13 . A G 331.323 . AB=0.130612;ABP=293.376;AC=3;AF=0.5;AN=6;AO=32;CIGAR=1X;DP=245;DPB=245;DPRA=0;EPP=72.4974;EPPR=465.534;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=1228;QR=8283;RO=213;RPL=0;RPP=72.4974;RPPR=465.534;RPR=32;RUN=1;SAF=32;SAP=72.4974;SAR=0;SRF=213;SRP=465.534;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:102:88,14:88:3462:14:550:-19.1391,0,-280.941 0/1:91:78,13:78:2990:13:495:-17.4952,0,-241.838 0/1:52:47,5:47:1831:5:183:-1.17081,0,-149.36 dDocent_Contig_5983 10 . T C 1031.68 . AB=0.330579;ABP=33.1776;AC=3;AF=0.5;AN=6;AO=40;CIGAR=1X;DP=121;DPB=121;DPRA=0;EPP=89.8692;EPPR=178.9;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=1601;QR=3247;RO=81;RPL=0;RPP=89.8692;RPPR=178.9;RPR=40;RUN=1;SAF=40;SAP=89.8692;SAR=0;SRF=81;SRP=178.9;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:54:42,12:42:1687:12:462:-25.6663,0,-135.797 0/1:18:12,6:12:481:6:243:-16.8294,0,-38.2203 0/1:49:27,22:27:1079:22:896:-66.1947,0,-82.6467 dDocent_Contig_5984 7 . A C 1254.28 . AB=0.212625;ABP=218.924;AC=3;AF=0.5;AN=6;AO=64;CIGAR=1X3M;DP=301;DPB=301;DPRA=0;EPP=141.985;EPPR=474.22;GTI=0;LEN=1;MEANALT=2;MQM=57.7188;MQMR=60;NS=3;NUMALT=2;ODDS=0;PAIRED=0.890625;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=2412;QR=8243;RO=217;RPL=0;RPP=141.985;RPPR=474.22;RPR=64;RUN=1;SAF=64;SAP=141.985;SAR=0;SRF=217;SRP=474.22;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|1:180:128,14,38:128:4855:14,38:533,1435:-78.0369,-72.8478,-466.726,0,-354.369,-386.649 0|1:40:31,4,5:31:1172:4,5:146,193:-6.53021,-3.94331,-98.8034,0,-84.1559,-94.5774 0|1:81:58,0,21:58:2216:0,21:0,784:-46.3839,-63.8437,-245.684,0,-181.925,-175.604 dDocent_Contig_5985 59 . A G 2798.74 . AB=0.0422535;ABP=261.446;AC=0;AF=0;AN=6;AO=6;CIGAR=1M1X12M;DP=301;DPB=315.714;DPRA=0;EPP=16.0391;EPPR=224.5;GTI=0;LEN=1;MEANALT=7.5;MQM=60;MQMR=60;NS=3;NUMALT=4;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=243;QR=3749;RO=102;RPL=6;RPP=16.0391;RPPR=224.5;RPR=0;RUN=1;SAF=6;SAP=16.0391;SAR=0;SRF=102;SRP=224.5;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|0:159:68,28,4,51,0:68:2513:28,4,51,0:1088,160,1982,0:-142.393,-73.4585,-270.592,-149.682,-265.84,-354.038,0,-116.163,-192.388,-190.217,-162.863,-279.02,-355.242,-205.569,-368.422 0|0:47:12,5,4,23,1:12:439:5,4,23,1:193,156,871,41:-67.7779,-55.5403,-89.9024,-58.566,-78.5829,-93.2294,0,-20.008,-23.0338,-28.9358,-68.0054,-88.0227,-91.0486,-32.474,-103.572 0|0:95:22,20,17,25,5:22:797:20,17,25,5:738,667,994,202:-75.2263,-21.517,-80.5583,-26.9924,-31.7218,-86.9391,0,-4.72924,-10.2051,-57.5399,-65.1942,-69.9241,-75.4016,-48.4099,-128.753 dDocent_Contig_5986 1 . N C 48.4497 . AB=0;ABP=0;AC=2;AF=1;AN=2;AO=2;CIGAR=1X;DP=2;DPB=2;DPRA=0;EPP=7.35324;EPPR=0;GTI=0;LEN=1;MEANALT=1;MQM=57;MQMR=0;NS=1;NUMALT=1;ODDS=5.99146;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=51;QR=0;RO=0;RPL=0;RPP=7.35324;RPPR=0;RPR=2;RUN=1;SAF=0;SAP=7.35324;SAR=2;SRF=0;SRP=0;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL ./.:.:.:.:.:.:.:. 1/1:2:0,2:0:0:2:51:-4.84388,-0.60206,0 ./.:.:.:.:.:.:.:. dDocent_Contig_5989 43 . T C 65.0105 . AB=0.127273;ABP=69.3784;AC=2;AF=0.333333;AN=6;AO=7;CIGAR=1X;DP=122;DPB=122;DPRA=0.410448;EPP=18.2106;EPPR=250.558;GTI=0;LEN=1;MEANALT=1.5;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=287;QR=4585;RO=114;RPL=0;RPP=18.2106;RPPR=250.558;RPR=7;RUN=1;SAF=7;SAP=18.2106;SAR=0;SRF=114;SRP=250.558;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:67:67,0:67:2695:0:0:0,-20.169,-242.66 0/1:27:23,4:23:940:4:164:-7.02209,0,-76.7709 0/1:28:24,3:24:950:3:123:-2.98718,0,-77.3405 dDocent_Contig_5990 10 . T A 1856.89 . AB=0.387283;ABP=22.1017;AC=3;AF=0.5;AN=6;AO=67;CIGAR=1X;DP=173;DPB=173;DPRA=0;EPP=148.499;EPPR=233.186;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=2693;QR=4262;RO=106;RPL=0;RPP=148.499;RPPR=233.186;RPR=67;RUN=1;SAF=67;SAP=148.499;SAR=0;SRF=106;SRP=233.186;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:72:29,43:29:1164:43:1731:-134.333,0,-83.3657 0/1:60:54,6:54:2176:6:242:-4.09552,0,-177.943 0/1:41:23,18:23:922:18:720:-52.7826,0,-70.9397 dDocent_Contig_5991 98 . N C 328.093 . AB=0;ABP=0;AC=2;AF=1;AN=2;AO=11;CIGAR=1X;DP=11;DPB=11;DPRA=0;EPP=26.8965;EPPR=0;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=0;NS=1;NUMALT=1;ODDS=12.2298;PAIRED=1;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=361;QR=0;RO=0;RPL=11;RPP=26.8965;RPPR=0;RPR=0;RUN=1;SAF=11;SAP=26.8965;SAR=0;SRF=0;SRP=0;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 1/1:11:0,11:0:0:11:361:-32.8093,-3.31133,0 ./.:.:.:.:.:.:.:. ./.:.:.:.:.:.:.:. dDocent_Contig_5993 15 . C T 232.626 . AB=0.206897;ABP=46.29;AC=2;AF=0.333333;AN=6;AO=15;CIGAR=4M1X;DP=129;DPB=131;DPRA=0;EPP=35.5824;EPPR=239.701;GTI=0;LEN=1;MEANALT=1.33333;MQM=60;MQMR=60;NS=3;NUMALT=2;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=577;QR=4329;RO=109;RPL=0;RPP=35.5824;RPPR=239.701;RPR=15;RUN=1;SAF=15;SAP=35.5824;SAR=0;SRF=109;SRP=239.701;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|0:71:68,0,3:68:2714:0,3:0,106:0,-20.47,-244.031,-11.4866,-235.403,-234.5 0|1:32:26,0,6:26:1020:0,6:0,237:-12.0687,-19.8955,-103.773,0,-84.2719,-82.4658 0|1:26:15,5,6:15:595:5,6:196,234:-14.7166,-3.11345,-50.5904,0,-32.8642,-47.1746 dDocent_Contig_5994 118 . A T 460.504 . AB=0.425926;ABP=5.5839;AC=1;AF=0.166667;AN=6;AO=25;CIGAR=1X;DP=98;DPB=98;DPRA=3.58333;EPP=57.2971;EPPR=161.528;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=58.0548;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=0.712329;PAO=0;PQA=0;PQR=0;PRO=0;QA=762;QR=2639;RO=73;RPL=0;RPP=57.2971;RPPR=161.528;RPR=25;RUN=1;SAF=0;SAP=57.2971;SAR=25;SRF=0;SRP=161.528;SRR=73;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:54:31,23:31:1124:23:706:-47.5733,0,-85.1874 0/0:12:12,0:12:435:0:0:0,-3.61236,-39.4632 0/0:32:30,2:30:1080:2:56:0,-4.31361,-91.9612 dDocent_Contig_5995 91 . T C 284.695 . AB=0.170213;ABP=136.209;AC=3;AF=0.5;AN=6;AO=24;CIGAR=1X;DP=141;DPB=141;DPRA=0;EPP=55.1256;EPPR=257.073;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=0.125;PAIREDR=0.991453;PAO=0;PQA=0;PQR=0;PRO=0;QA=838;QR=4033;RO=117;RPL=24;RPP=55.1256;RPPR=257.073;RPR=0;RUN=1;SAF=24;SAP=55.1256;SAR=0;SRF=117;SRP=257.073;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:87:75,12:75:2575:12:420:-11.9454,0,-205.818 0/1:15:10,5:10:349:5:175:-11.5782,0,-27.2313 0/1:39:32,7:32:1109:7:243:-10.4687,0,-88.3789 dDocent_Contig_5996 12 . A C 101.889 . AB=0.176471;ABP=33.9218;AC=1;AF=0.166667;AN=6;AO=17;CIGAR=1X;DP=168;DPB=168;DPRA=0;EPP=39.9253;EPPR=330.903;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=0.993377;PAO=0;PQA=0;PQR=0;PRO=0;QA=658;QR=6028;RO=151;RPL=0;RPP=39.9253;RPPR=330.903;RPR=17;RUN=1;SAF=17;SAP=39.9253;SAR=0;SRF=151;SRP=330.903;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:92:85,7:85:3371:7:287:0,-1.48953,-277.239 0/1:34:28,6:28:1125:6:243:-12.0126,0,-91.2988 0/0:42:38,4:38:1532:4:128:0,-0.81491,-126.29 dDocent_Contig_5998 9 . C A 59.9607 . AB=0.190476;ABP=20.4855;AC=1;AF=0.166667;AN=6;AO=5;CIGAR=1X;DP=134;DPB=134;DPRA=1.02273;EPP=13.8677;EPPR=283.13;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=0;PAIREDR=0.813953;PAO=0;PQA=0;PQR=0;PRO=0;QA=190;QR=4944;RO=129;RPL=0;RPP=13.8677;RPPR=283.13;RPR=5;RUN=1;SAF=5;SAP=13.8677;SAR=0;SRF=129;SRP=283.13;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:69:68,1:68:2608:1:37:0,-17.0732,-231.216 0/1:21:17,4:17:642:4:153:-7.81998,0,-51.7938 0/0:44:44,0:44:1694:0:0:0,-13.2453,-152.716 dDocent_Contig_5999 15 . C A 171.164 . AB=0.147368;ABP=105.618;AC=2;AF=0.333333;AN=6;AO=20;CIGAR=1X;DP=207;DPB=207;DPRA=0;EPP=46.4397;EPPR=406.904;GTI=0;LEN=1;MEANALT=1.33333;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=779;QR=7460;RO=186;RPL=0;RPP=46.4397;RPPR=406.904;RPR=20;RUN=1;SAF=20;SAP=46.4397;SAR=0;SRF=186;SRP=406.904;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:112:106,6:106:4243:6:239:0,-11.8315,-359.933 0/1:38:32,6:32:1274:6:216:-8.34137,0,-103.487 0/1:57:48,8:48:1943:8:324:-12.2979,0,-157.83 dDocent_Contig_6001 10 . T A 4504.71 . AB=0.539568;ABP=6.79085;AC=3;AF=0.5;AN=6;AO=150;CIGAR=1X;DP=278;DPB=278;DPRA=0;EPP=328.731;EPPR=280.959;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=1.38778e-17;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=5990;QR=5122;RO=128;RPL=0;RPP=328.731;RPPR=280.959;RPR=150;RUN=1;SAF=150;SAP=328.731;SAR=0;SRF=128;SRP=280.959;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:116:52,64:52:2092:64:2556:-195.25,0,-153.535 0/1:77:39,38:39:1542:38:1521:-113.957,0,-115.843 0/1:85:37,48:37:1488:48:1913:-146.786,0,-108.575 dDocent_Contig_6002 54 . C A 147.323 . AB=0.304348;ABP=10.6577;AC=1;AF=0.166667;AN=6;AO=11;CIGAR=1X;DP=82;DPB=82;DPRA=0;EPP=26.8965;EPPR=157.185;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=0.957746;PAO=0;PQA=0;PQR=0;PRO=0;QA=412;QR=2829;RO=71;RPL=11;RPP=26.8965;RPPR=157.185;RPR=0;RUN=1;SAF=11;SAP=26.8965;SAR=0;SRF=71;SRP=157.185;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:37:34,3:34:1356:3:116:0,-0.320574,-111.482 0/1:23:16,7:16:623:7:257:-16.5555,0,-49.471 0/0:22:21,1:21:850:1:39:0,-2.7261,-72.9148 dDocent_Contig_6003 44 . C A 6262.74 . AB=0.77821;ABP=175.79;AC=3;AF=0.5;AN=6;AO=200;CIGAR=1X;DP=257;DPB=257;DPRA=0;EPP=437.305;EPPR=124.613;GTI=0;LEN=1;MEANALT=1.33333;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=7876;QR=2244;RO=56;RPL=0;RPP=437.305;RPPR=124.613;RPR=200;RUN=1;SAF=200;SAP=437.305;SAR=0;SRF=56;SRP=124.613;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:129:23,106:23:920:106:4168:-336.284,0,-44.2718 0/1:41:11,30:11:438:30:1179:-94.0475,0,-27.4328 0/1:87:22,64:22:886:64:2529:-201.466,0,-53.752 dDocent_Contig_6004 14 . T C 53.1627 . AB=0.153846;ABP=30.0702;AC=1;AF=0.166667;AN=6;AO=4;CIGAR=1X;DP=113;DPB=113;DPRA=0.597701;EPP=11.6962;EPPR=239.701;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=0.75;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=162;QR=4327;RO=109;RPL=0;RPP=11.6962;RPPR=239.701;RPR=4;RUN=1;SAF=4;SAP=11.6962;SAR=0;SRF=109;SRP=239.701;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:56:56,0:56:2224:0:0:0,-16.8577,-200.327 0/1:26:22,4:22:862:4:162:-7.14018,0,-70.0645 0/0:31:31,0:31:1241:0:0:0,-9.33193,-111.961 dDocent_Contig_6005 52 . G T 4543.65 . AB=0.498423;ABP=3.01715;AC=3;AF=0.5;AN=6;AO=158;CIGAR=1X;DP=317;DPB=317;DPRA=0;EPP=346.103;EPPR=346.103;GTI=0;LEN=1;MEANALT=1.33333;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=1.38778e-17;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=6161;QR=6158;RO=158;RPL=158;RPP=346.103;RPPR=346.103;RPR=0;RUN=1;SAF=158;SAP=346.103;SAR=0;SRF=158;SRP=346.103;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:195:92,103:92:3597:103:4005:-301.763,0,-265.058 0/1:16:12,4:12:451:4:159:-9.87547,0,-36.1066 0/1:106:54,51:54:2110:51:1997:-148.25,0,-158.419 dDocent_Contig_6007 110 . A G 908.362 . AB=0.276471;ABP=76.7893;AC=3;AF=0.5;AN=6;AO=47;CIGAR=1X;DP=170;DPB=170;DPRA=0;EPP=105.07;EPPR=270.101;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=1628;QR=4195;RO=123;RPL=0;RPP=105.07;RPPR=270.101;RPR=47;RUN=1;SAF=0;SAP=105.07;SAR=47;SRF=0;SRP=270.101;SRR=123;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:114:80,34:80:2740:34:1175:-71.7385,0,-212.537 0/1:13:11,2:11:379:2:70:-2.73401,0,-30.5288 0/1:43:32,11:32:1076:11:383:-21.8606,0,-84.1998 dDocent_Contig_6008 10 . T C 130.428 . AB=0.0625;ABP=56.2114;AC=0;AF=0;AN=6;AO=2;CIGAR=1X2M1X1M1X1M3X1M1X7M1X1M1X;DP=82;DPB=81.9545;DPRA=0;EPP=7.35324;EPPR=96.3836;GTI=0;LEN=1;MEANALT=6;MQM=44;MQMR=60;NS=3;NUMALT=9;ODDS=0;PAIRED=0;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=80;QR=1687;RO=43;RPL=0;RPP=7.35324;RPPR=96.3836;RPR=2;RUN=1;SAF=2;SAP=7.35324;SAR=0;SRF=43;SRP=96.3836;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|0:32:14,2,2,0,2,4,0,0,3,5:14:549:2,2,0,2,4,0,0,3,5:80,79,0,72,116,0,0,115,200:-12.2772,-10.1519,-54.7159,-9.98583,-48.8153,-54.5503,-16.4916,-55.318,-55.1524,-61.6549,-11.1587,-49.9847,-49.8191,-56.3215,-55.7194,-8.36589,-47.1819,-47.0162,-53.5177,-48.1859,-52.3136,-16.4916,-55.318,-55.1524,-61.6549,-56.3215,-53.5177,-61.6549,-16.4916,-55.318,-55.1524,-61.6549,-56.3215,-53.5177,-61.6549,-61.6549,-7.04906,-45.8795,-45.7138,-52.2166,-46.8834,-44.0811,-52.2166,-52.2166,-51.3135,0,-38.8374,-38.6717,-45.1749,-39.8416,-37.0402,-45.1749,-45.1749,-35.7356,-43.6697 0|0:29:16,0,0,2,0,0,2,0,0,0:16:630:0,0,2,0,0,2,0,0,0:0,0,75,0,0,80,0,0,0:-1.78442,-6.6009,-58.4583,-6.6009,-58.4583,-58.4583,-0.451863,-52.3151,-52.3151,-51.7131,-6.6009,-58.4583,-58.4583,-52.3151,-58.4583,-6.6009,-58.4583,-58.4583,-52.3151,-58.4583,-58.4583,0,-51.8659,-51.8659,-45.7225,-51.8659,-51.8659,-51.2639,-6.6009,-58.4583,-58.4583,-52.3151,-58.4583,-58.4583,-51.8659,-58.4583,-6.6009,-58.4583,-58.4583,-52.3151,-58.4583,-58.4583,-51.8659,-58.4583,-58.4583,-6.6009,-58.4583,-58.4583,-52.3151,-58.4583,-58.4583,-51.8659,-58.4583,-58.4583,-58.4583 0|0:21:13,0,0,0,0,0,0,4,2,1:13:508:0,0,0,0,0,0,4,2,1:0,0,0,0,0,0,116,78,38:-4.17988,-8.09327,-49.8966,-8.09327,-49.8966,-49.8966,-8.09327,-49.8966,-49.8966,-49.8966,-8.09327,-49.8966,-49.8966,-49.8966,-49.8966,-8.09327,-49.8966,-49.8966,-49.8966,-49.8966,-49.8966,-8.09327,-49.8966,-49.8966,-49.8966,-49.8966,-49.8966,-49.8966,0,-41.7679,-41.7679,-41.7679,-41.7679,-41.7679,-41.7679,-40.5637,-1.6589,-43.4828,-43.4828,-43.4828,-43.4828,-43.4828,-43.4828,-35.3565,-42.8807,-4.9682,-46.7793,-46.7793,-46.7793,-46.7793,-46.7793,-46.7793,-38.6519,-40.3652,-46.4783 dDocent_Contig_6009 14 . 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AB=0;ABP=0;AC=2;AF=1;AN=2;AO=4;CIGAR=1X;DP=4;DPB=4;DPRA=0;EPP=11.6962;EPPR=0;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=0;NS=1;NUMALT=1;ODDS=7.37776;PAIRED=1;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=101;QR=0;RO=0;RPL=0;RPP=11.6962;RPPR=0;RPR=4;RUN=1;SAF=0;SAP=11.6962;SAR=4;SRF=0;SRP=0;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 1/1:4:0,4:0:0:4:101:-9.34117,-1.20412,0 ./.:.:.:.:.:.:.:. ./.:.:.:.:.:.:.:. dDocent_Contig_6015 47 . G T 206.856 . AB=0.238095;ABP=28.0339;AC=2;AF=0.333333;AN=6;AO=10;CIGAR=1X;DP=65;DPB=65;DPRA=0.913043;EPP=24.725;EPPR=122.441;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=401;QR=2181;RO=55;RPL=0;RPP=24.725;RPPR=122.441;RPR=10;RUN=1;SAF=10;SAP=24.725;SAR=0;SRF=55;SRP=122.441;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:26:22,4:22:889:4:163:-7.23165,0,-72.4904 0/1:16:10,6:10:402:6:238:-16.9768,0,-31.7234 0/0:23:23,0:23:890:0:0:0,-6.92369,-80.3914 dDocent_Contig_6016 13 . A T 32.6383 . AB=0.103896;ABP=107.946;AC=2;AF=0.333333;AN=6;AO=8;CIGAR=1X;DP=93;DPB=93;DPRA=2.40625;EPP=20.3821;EPPR=187.585;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=0.625;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=317;QR=3367;RO=85;RPL=0;RPP=20.3821;RPPR=187.585;RPR=8;RUN=1;SAF=8;SAP=20.3821;SAR=0;SRF=85;SRP=187.585;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:56:50,6:50:2009:6:236:-4.75422,0,-164.141 0/0:16:16,0:16:632:0:0:0,-4.81648,-57.2146 0/1:21:19,2:19:726:2:81:-1.3641,0,-59.3332 dDocent_Contig_6017 10 . G A 827.251 . AB=0.0926244;ABP=843.385;AC=3;AF=0.5;AN=6;AO=54;CIGAR=1M1X;DP=583;DPB=583;DPRA=0;EPP=120.27;EPPR=921.543;GTI=0;LEN=1;MEANALT=4;MQM=60;MQMR=60;NS=3;NUMALT=3;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=2122;QR=16335;RO=423;RPL=0;RPP=120.27;RPPR=921.543;RPR=54;RUN=1;SAF=54;SAP=120.27;SAR=0;SRF=423;SRP=921.543;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|1:268:199,30,29,8:199:7680:30,29,8:1169,1150,300:-36.1787,0,-621.645,-1.42396,-536.019,-623.374,-71.5133,-606.104,-607.532,-699.78 0|1:150:112,18,6,13:112:4337:18,6,13:690,242,459:-22.9184,0,-350.866,-36.6805,-336.335,-391.156,-19.2788,-318.921,-355.599,-371.634 0|1:165:112,20,19,9:112:4318:20,19,9:766,730,334:-29.1453,0,-348.529,-2.94718,-294.637,-351.777,-35.5344,-327.222,-330.169,-387.372 dDocent_Contig_6018 107 . N T 271.779 . AB=0.5;ABP=3.0103;AC=6;AF=1;AN=6;AO=5;CIGAR=1X4M;DP=14;DPB=14;DPRA=3;EPP=13.8677;EPPR=0;GTI=0;LEN=1;MEANALT=2;MQM=18.4;MQMR=0;NS=3;NUMALT=3;ODDS=0;PAIRED=0.2;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=73;QR=0;RO=0;RPL=0;RPP=13.8677;RPPR=0;RPR=5;RUN=1;SAF=0;SAP=13.8677;SAR=5;SRF=0;SRP=0;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 1|1:6:0,0,3,3:0:0:0,3,3:0,105,63:-13.0372,-13.0372,-13.0372,-4.41401,-4.41401,-3.51092,-8.89307,-8.89307,0,-7.98998 1|1:6:0,4,0,2:0:0:4,0,2:138,0,10:-12.3898,-1.20412,0,-12.3898,-1.20412,-12.3898,-12.6028,-1.28612,-12.6028,-12.0007 1|1:2:0,1,0,0:0:0:1,0,0:35,0,0:-3.26673,-0.30103,0,-3.26673,-0.30103,-3.26673,-3.26673,-0.30103,-3.26673,-3.26673 dDocent_Contig_6020 18 . G A 178.706 . AB=0.0922509;ABP=785.718;AC=1;AF=0.166667;AN=6;AO=104;CIGAR=1X1M1X;DP=1566;DPB=1566;DPRA=0;EPP=228.843;EPPR=3084.33;GTI=0;LEN=1;MEANALT=3.33333;MQM=55.9423;MQMR=57.3686;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=0.999295;PAO=0;PQA=0;PQR=0;PRO=0;QA=4117;QR=55426;RO=1419;RPL=0;RPP=228.843;RPPR=3084.33;RPR=104;RUN=1;SAF=104;SAP=228.843;SAR=0;SRF=1419;SRP=3084.33;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|0:767:708,35:708:27622:35:1375:0,-100.273,-2320.86 0|0:257:234,19:234:9115:19:755:0,-8.36879,-737.938 0|1:542:477,50:477:18689:50:1987:-19.6945,0,-1479.13 dDocent_Contig_6021 13 . G A 941.209 . 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AB=0.135802;ABP=189.65;AC=2;AF=0.333333;AN=6;AO=29;CIGAR=1X;DP=295;DPB=295;DPRA=0;EPP=65.983;EPPR=580.622;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=1106;QR=10171;RO=266;RPL=0;RPP=65.983;RPPR=580.622;RPR=29;RUN=1;SAF=29;SAP=65.983;SAR=0;SRF=266;SRP=580.622;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:133:126,7:126:4823:7:263:0,-16.0083,-410.067 0/1:83:68,15:68:2588:15:572:-26.8362,0,-208.131 0/1:79:72,7:72:2760:7:271:-0.974942,0,-224.801 dDocent_Contig_6024 9 . C T 2130.98 . AB=0.0290698;ABP=665.663;AC=0;AF=0;AN=6;AO=10;CIGAR=1X6M;DP=489;DPB=489;DPRA=0;EPP=24.725;EPPR=481.323;GTI=0;LEN=1;MEANALT=11.5;MQM=60;MQMR=57.5339;NS=3;NUMALT=7;ODDS=0;PAIRED=0;PAIREDR=0.427966;PAO=0;PQA=0;PQR=0;PRO=0;QA=373;QR=9143;RO=236;RPL=0;RPP=24.725;RPPR=515.478;RPR=10;RUN=1;SAF=10;SAP=24.725;SAR=0;SRF=232;SRP=481.323;SRR=4;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|0:124:75,0,0,5,17,8,7,4:75:2939:0,0,5,17,8,7,4:0,0,193,688,301,230,158:-34.1546,-56.7319,-295.168,-56.7319,-295.168,-295.168,-40.8823,-279.319,-279.319,-277.813,0,-238.445,-238.445,-222.596,-233.328,-32.0701,-270.505,-270.505,-254.656,-213.783,-268.097,-38.7438,-277.173,-277.173,-261.324,-220.451,-252.511,-275.066,-43.7299,-282.167,-282.167,-266.317,-225.444,-257.504,-264.172,-280.962 0|0:220:110,0,11,5,18,2,53,5:110:4209:0,11,5,18,2,53,5:0,389,198,712,72,1981,201:-120.488,-153.601,-485.667,-123.167,-455.232,-451.921,-137.303,-469.37,-438.935,-467.865,-95.005,-427.075,-396.64,-410.778,-421.657,-147.727,-479.793,-449.357,-463.495,-421.201,-479.191,0,-332.066,-301.631,-315.768,-273.473,-326.191,-316.111,-137.035,-469.103,-438.667,-452.805,-410.511,-463.228,-315.501,-467.598 0|0:145:51,10,5,17,25,0,18,9:51:1995:10,5,17,25,0,18,9:300,191,666,966,0,686,352:-63.9782,-58.0599,-215.151,-63.7568,-202.588,-222.357,-24.5617,-163.396,-169.096,-179.552,0,-138.836,-144.536,-105.342,-152.584,-79.3308,-218.161,-223.863,-184.67,-160.109,-239.436,-24.6841,-163.517,-169.217,-130.024,-105.463,-184.791,-179.372,-50.3879,-189.22,-194.921,-155.728,-131.167,-210.495,-155.849,-207.785 dDocent_Contig_6025 25 . 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AB=0.112613;ABP=292.383;AC=2;AF=0.333333;AN=6;AO=25;CIGAR=1X;DP=289;DPB=289;DPRA=1.65672;EPP=57.2971;EPPR=8.57059;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=994;QR=9848;RO=264;RPL=25;RPP=57.2971;RPPR=8.57059;RPR=0;RUN=1;SAF=25;SAP=57.2971;SAR=0;SRF=264;SRP=576.279;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:159:140,19:140:5271:19:751:-20.0457,0,-426.513 0/0:67:67,0:67:2408:0:0:0,-20.169,-216.916 0/1:63:57,6:57:2169:6:243:-3.28308,0,-176.471 dDocent_Contig_6027 7 . A G 648.18 . AB=0.283019;ABP=46.3578;AC=3;AF=0.5;AN=6;AO=30;CIGAR=1X4M;DP=106;DPB=106;DPRA=0;EPP=68.1545;EPPR=135.47;GTI=0;LEN=1;MEANALT=2.66667;MQM=60;MQMR=60;NS=3;NUMALT=2;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=1009;QR=2350;RO=61;RPL=0;RPP=68.1545;RPPR=135.47;RPR=30;RUN=1;SAF=30;SAP=68.1545;SAR=0;SRF=61;SRP=135.47;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|1:30:26,3,1:26:1005:3,1:102,35:-0.438034,0,-81.6795,-5.41457,-79.7362,-87.7027 0|1:49:21,8,19:21:809:8,19:290,641:-45.6118,-28.251,-92.302,0,-42.7952,-60.7449 0|1:27:14,2,10:14:536:2,10:68,333:-22.7251,-21.4225,-64.8355,0,-38.5159,-41.0169 dDocent_Contig_6028 14 . G A 18771.2 . AB=0.685961;ABP=246.911;AC=3;AF=0.5;AN=6;AO=557;CIGAR=1M1X5M;DP=812;DPB=787.857;DPRA=0;EPP=1212.52;EPPR=213.643;GTI=0;LEN=1;MEANALT=4.66667;MQM=60;MQMR=60;NS=3;NUMALT=3;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=22214;QR=3815;RO=97;RPL=0;RPP=1212.52;RPPR=213.643;RPR=557;RUN=1;SAF=557;SAP=1212.52;SAR=0;SRF=97;SRP=213.643;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|1:490:64,46,26,349:64:2515:46,26,349:1803,1039,13942:-1129.03,-1000.03,-1193.05,-1062.72,-1121.32,-1261.75,0,-58.5992,-121.284,-101.802 0|1:135:10,16,21,88:10:394:16,21,88:628,816,3477:-317.72,-269.081,-296.68,-253.682,-234.449,-279.776,-34.6309,-15.3968,0,-40.5566 0|1:187:23,6,38,120:23:906:6,38,120:230,1489,4795:-435.888,-423.936,-496.666,-320.386,-376.046,-383.482,-47.8902,-103.552,0,-86.304 dDocent_Contig_6030 14 . T C 998.651 . AB=0.193309;ABP=222.781;AC=3;AF=0.5;AN=6;AO=52;CIGAR=1X;DP=269;DPB=269;DPRA=0;EPP=115.927;EPPR=472.048;GTI=0;LEN=1;MEANALT=1.33333;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=1.38778e-17;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=2061;QR=8482;RO=216;RPL=0;RPP=115.927;RPPR=472.048;RPR=52;RUN=1;SAF=52;SAP=115.927;SAR=0;SRF=216;SRP=472.048;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:154:126,27:126:4971:27:1062:-49.4026,0,-400.815 0/1:50:42,8:42:1631:8:314:-13.5731,0,-131.976 0/1:65:48,17:48:1880:17:685:-42.4123,0,-149.842 dDocent_Contig_6031 1 . N G 628.538 . AB=0;ABP=0;AC=6;AF=1;AN=6;AO=21;CIGAR=1X;DP=21;DPB=21;DPRA=0;EPP=48.6112;EPPR=0;GTI=0;LEN=1;MEANALT=1;MQM=44.1429;MQMR=0;NS=3;NUMALT=1;ODDS=0;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=693;QR=0;RO=0;RPL=0;RPP=48.6112;RPPR=0;RPR=21;RUN=1;SAF=0;SAP=48.6112;SAR=21;SRF=0;SRP=0;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 1/1:7:0,7:0:0:7:228:-20.5713,-2.10721,0 1/1:10:0,10:0:0:10:325:-28.7557,-3.0103,0 1/1:4:0,4:0:0:4:140:-12.9247,-1.20412,0 dDocent_Contig_6032 25 . G C 1886.35 . AB=0.0628571;ABP=293.479;AC=0;AF=0;AN=6;AO=11;CIGAR=1X3M1D6M;DP=224;DPB=216.182;DPRA=0;EPP=26.8965;EPPR=298.331;GTI=0;LEN=1;MEANALT=3.5;MQM=60;MQMR=60;NS=3;NUMALT=2;ODDS=0;PAIRED=1;PAIREDR=0.948529;PAO=0;PQA=0;PQR=0;PRO=0;QA=423;QR=5279;RO=136;RPL=0;RPP=26.8965;RPPR=298.331;RPR=11;RUN=1;SAF=11;SAP=26.8965;SAR=0;SRF=136;SRP=298.331;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|0:125:80,10,32:80:3128:10,32:386,1276:-81.0271,-73.4116,-327.568,0,-225.495,-247.561 0|0:50:32,1,17:32:1233:1,17:37,665:-45.0601,-51.6672,-152.6,0,-98.2257,-96.1348 0|0:49:24,0,24:24:918:0,24:0,918:-68.0705,-75.2952,-150.613,0,-75.3017,-68.077 dDocent_Contig_6033 168 . G C 57.133 . AB=0.127273;ABP=69.3784;AC=2;AF=0.333333;AN=6;AO=7;CIGAR=1X;DP=74;DPB=74;DPRA=1.44737;EPP=18.2106;EPPR=148.499;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=278;QR=2612;RO=67;RPL=7;RPP=18.2106;RPPR=148.499;RPR=0;RUN=1;SAF=0;SAP=18.2106;SAR=7;SRF=0;SRP=148.499;SRR=67;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:26:23,3:23:914:3:122:-3.54571,0,-74.7331 0/0:19:19,0:19:711:0:0:0,-5.71957,-64.3053 0/1:29:25,4:25:987:4:156:-5.68633,0,-80.3946 dDocent_Contig_6034 117 . A G 1008 . AB=0.403509;ABP=12.2295;AC=3;AF=0.5;AN=6;AO=46;CIGAR=1X;DP=114;DPB=114;DPRA=0;EPP=102.898;EPPR=150.67;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=0.847826;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=1552;QR=2209;RO=68;RPL=0;RPP=102.898;RPPR=150.67;RPR=46;RUN=1;SAF=0;SAP=102.898;SAR=46;SRF=0;SRP=150.67;SRR=68;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:61:44,17:44:1419:17:565:-32.8013,0,-109.628 0/1:30:13,17:13:433:17:588:-44.2155,0,-30.2594 0/1:23:11,12:11:357:12:399:-29.3059,0,-25.5212 dDocent_Contig_6035 27 . A C 760.189 . AB=0.167832;ABP=277.102;AC=3;AF=0.5;AN=6;AO=48;CIGAR=1X;DP=286;DPB=286;DPRA=0;EPP=107.241;EPPR=519.821;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=1852;QR=9325;RO=238;RPL=0;RPP=107.241;RPPR=519.821;RPR=48;RUN=1;SAF=48;SAP=107.241;SAR=0;SRF=238;SRP=519.821;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:152:128,24:128:5027:24:945:-39.5925,0,-406.589 0/1:40:33,7:33:1291:7:257:-11.4292,0,-104.423 0/1:94:77,17:77:3007:17:650:-30.5201,0,-242.45 dDocent_Contig_6038 32 . G T 132.988 . AB=0.225806;ABP=23.254;AC=2;AF=0.333333;AN=6;AO=7;CIGAR=1X;DP=41;DPB=41;DPRA=1.55;EPP=18.2106;EPPR=76.8404;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=282;QR=1341;RO=34;RPL=0;RPP=18.2106;RPPR=76.8404;RPR=7;RUN=1;SAF=7;SAP=18.2106;SAR=0;SRF=34;SRP=76.8404;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:10:10,0:10:401:0:0:0,-3.0103,-36.4501 0/1:22:17,5:17:682:5:202:-11.9392,0,-55.0881 0/1:9:7,2:7:258:2:80:-4.8823,0,-20.8515 dDocent_Contig_6039 9 . C A 34.7251 . AB=0.285714;ABP=5.80219;AC=1;AF=0.166667;AN=6;AO=2;CIGAR=1X;DP=32;DPB=32;DPRA=0.56;EPP=7.35324;EPPR=68.1545;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=78;QR=1142;RO=30;RPL=0;RPP=7.35324;RPPR=68.1545;RPR=2;RUN=1;SAF=2;SAP=7.35324;SAR=0;SRF=30;SRP=68.1545;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:18:18,0:18:678:0:0:0,-5.41854,-61.346 0/0:7:7,0:7:272:0:0:0,-2.10721,-24.8472 0/1:7:5,2:5:192:2:78:-5.29626,0,-15.5428 dDocent_Contig_6040 16 . A T 931.66 . AB=0.25641;ABP=83.4105;AC=2;AF=0.333333;AN=6;AO=46;CIGAR=1X;DP=273;DPB=273;DPRA=0;EPP=102.898;EPPR=493.763;GTI=0;LEN=1;MEANALT=1.33333;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=0.978261;PAIREDR=0.995575;PAO=0;PQA=0;PQR=0;PRO=0;QA=1831;QR=8948;RO=226;RPL=0;RPP=102.898;RPPR=493.763;RPR=46;RUN=1;SAF=46;SAP=102.898;SAR=0;SRF=226;SRP=493.763;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:117:111,6:111:4394:6:244:0,-12.8817,-373.083 0/1:89:70,18:70:2773:18:716:-38.1569,0,-223.086 0/1:67:45,22:45:1781:22:871:-58.532,0,-140.337 dDocent_Contig_6041 57 . A C 41.1331 . AB=0.0952381;ABP=182.312;AC=1;AF=0.166667;AN=6;AO=18;CIGAR=1M1D1X;DP=236;DPB=230;DPRA=0;EPP=42.0968;EPPR=474.22;GTI=0;LEN=1;MEANALT=1.33333;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=1.38778e-17;PAIRED=1;PAIREDR=0.958525;PAO=0;PQA=0;PQR=0;PRO=0;QA=718;QR=8139;RO=217;RPL=18;RPP=42.0968;RPPR=474.22;RPR=0;RUN=1;SAF=18;SAP=42.0968;SAR=0;SRF=217;SRP=474.22;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|1:126:113,12:113:4286:12:478:-5.63615,0,-348.084 0|0:69:64,5:64:2337:5:200:0,-2.39136,-192.15 0|0:41:40,1:40:1516:1:40:0,-8.34655,-132.714 dDocent_Contig_6042 45 . G A 367.683 . AB=0.232877;ABP=48.2543;AC=2;AF=0.333333;AN=6;AO=19;CIGAR=1X;DP=99;DPB=99;DPRA=0;EPP=44.2683;EPPR=174.557;GTI=0;LEN=1;MEANALT=1.33333;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=758;QR=3049;RO=79;RPL=0;RPP=44.2683;RPPR=174.557;RPR=19;RUN=1;SAF=19;SAP=44.2683;SAR=0;SRF=79;SRP=174.557;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:65:48,16:48:1862:16:640:-38.2563,0,-148.12 0/0:26:24,2:24:919:2:80:0,-0.235205,-75.4185 0/1:8:7,1:7:268:1:38:-1.38903,0,-22.0667 dDocent_Contig_6043 21 . T C 11068.9 . AB=0.756989;ABP=269.756;AC=3;AF=0.5;AN=6;AO=352;CIGAR=1X;DP=465;DPB=465;DPRA=0;EPP=767.369;EPPR=248.387;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=13918;QR=4507;RO=113;RPL=0;RPP=767.369;RPPR=248.387;RPR=352;RUN=1;SAF=352;SAP=767.369;SAR=0;SRF=113;SRP=248.387;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:238:74,164:74:2938:164:6504:-513.438,0,-192.88 0/1:108:22,86:22:885:86:3399:-273.46,0,-47.4465 0/1:119:17,102:17:684:102:4015:-325.513,0,-26.0673 dDocent_Contig_6044 128 . A T 393.179 . AB=0.454545;ABP=3.60252;AC=1;AF=0.166667;AN=6;AO=15;CIGAR=1X;DP=93;DPB=93;DPRA=1.1;EPP=35.5824;EPPR=172.385;GTI=0;LEN=1;MEANALT=1;MQM=54;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=0;PAIREDR=0.987179;PAO=0;PQA=0;PQR=0;PRO=0;QA=565;QR=2988;RO=78;RPL=0;RPP=35.5824;RPPR=172.385;RPR=15;RUN=1;SAF=0;SAP=35.5824;SAR=15;SRF=0;SRP=172.385;SRR=78;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:54:54,0:54:2042:0:0:0,-16.2556,-183.976 0/0:6:6,0:6:231:0:0:0,-1.80618,-21.157 0/1:33:18,15:18:715:15:565:-41.1418,0,-54.7436 dDocent_Contig_6045 25 . A T 1719.84 . AB=0.48;ABP=3.44459;AC=3;AF=0.5;AN=6;AO=60;CIGAR=1X;DP=125;DPB=125;DPRA=0;EPP=133.299;EPPR=139.813;GTI=0;LEN=1;MEANALT=1.33333;MQM=53.8167;MQMR=60;NS=3;NUMALT=1;ODDS=6.93889e-18;PAIRED=0.35;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=2393;QR=2469;RO=63;RPL=0;RPP=133.299;RPPR=139.813;RPR=60;RUN=1;SAF=60;SAP=133.299;SAR=0;SRF=63;SRP=139.813;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:62:24,36:24:924:36:1423:-108.721,0,-64.9847 0/1:21:15,6:15:598:6:245:-15.8967,0,-47.8322 0/1:42:24,18:24:947:18:725:-52.889,0,-72.8894 dDocent_Contig_6046 40 . T C 125.237 . AB=0.357143;ABP=5.49198;AC=1;AF=0.166667;AN=6;AO=6;CIGAR=1X;DP=53;DPB=53;DPRA=1.39286;EPP=16.0391;EPPR=105.07;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=243;QR=1856;RO=47;RPL=0;RPP=16.0391;RPPR=105.07;RPR=6;RUN=1;SAF=6;SAP=16.0391;SAR=0;SRF=47;SRP=105.07;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:25:24,1:24:957:1:41:0,-3.43118,-82.3373 0/1:14:9,5:9:340:5:202:-14.3477,0,-26.7359 0/0:14:14,0:14:559:0:0:0,-4.21442,-50.6516 dDocent_Contig_6047 34 . A C 5847.2 . AB=0.465854;ABP=7.16258;AC=3;AF=0.5;AN=6;AO=191;CIGAR=3M1X4M;DP=410;DPB=388.625;DPRA=0;EPP=417.762;EPPR=311.359;GTI=0;LEN=1;MEANALT=7.66667;MQM=59.6545;MQMR=60;NS=3;NUMALT=3;ODDS=0;PAIRED=0.900524;PAIREDR=0.873239;PAO=0;PQA=0;PQR=0;PRO=0;QA=7683;QR=5533;RO=142;RPL=0;RPP=417.762;RPPR=311.359;RPR=191;RUN=1;SAF=191;SAP=417.762;SAR=0;SRF=142;SRP=311.359;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|1:171:66,9,8,83:66:2582:9,8,83:364,299,3343:-255.478,-245.334,-454.911,-250.869,-433.142,-460.746,0,-182.278,-187.813,-187.305 0|1:113:29,13,10,57:29:1112:13,10,57:515,399,2290:-179.981,-146.322,-233.667,-155.85,-204.719,-244.099,0,-48.8681,-58.3972,-74.1022 0|1:126:47,4,11,51:47:1839:4,11,51:158,425,2050:-154.783,-155.93,-305.926,-134.033,-272.231,-281.921,0,-138.202,-116.304,-135.851 dDocent_Contig_6048 40 . C A 96.3862 . AB=0.148936;ABP=53.3238;AC=1;AF=0.166667;AN=6;AO=7;CIGAR=1X3M2I3M;DP=89;DPB=91;DPRA=2.2381;EPP=18.2106;EPPR=178.9;GTI=0;LEN=1;MEANALT=2;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=278;QR=3184;RO=81;RPL=0;RPP=18.2106;RPPR=178.9;RPR=7;RUN=1;SAF=7;SAP=18.2106;SAR=0;SRF=81;SRP=178.9;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|1:47:39,7:39:1527:7:278:-11.1615,0,-123.457 0|0:15:15,0:15:602:0:0:0,-4.51545,-54.5199 0|0:27:27,0:27:1055:0:0:0,-8.12781,-95.2474 dDocent_Contig_6049 101 . N C 66.4848 . AB=0;ABP=0;AC=2;AF=1;AN=2;AO=2;CIGAR=7X;DP=2;DPB=2;DPRA=0;EPP=7.35324;EPPR=0;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=0;NS=1;NUMALT=1;ODDS=5.99146;PAIRED=1;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=70;QR=0;RO=0;RPL=0;RPP=7.35324;RPPR=0;RPR=2;RUN=1;SAF=2;SAP=7.35324;SAR=0;SRF=0;SRP=0;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL .:.:.:.:.:.:.:. .:.:.:.:.:.:.:. 1|1:2:0,2:0:0:2:70:-6.6474,-0.60206,0 dDocent_Contig_6050 10 . C A 960.099 . AB=0.25974;ABP=80.2245;AC=2;AF=0.333333;AN=6;AO=41;CIGAR=1X;DP=211;DPB=211;DPRA=0;EPP=92.0407;EPPR=372.161;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=6.93889e-18;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=1655;QR=6728;RO=170;RPL=0;RPP=92.0407;RPPR=372.161;RPR=41;RUN=1;SAF=41;SAP=92.0407;SAR=0;SRF=170;SRP=372.161;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:101:72,29:72:2870:29:1170:-75.172,0,-228.003 0/0:57:56,1:56:2234:1:41:0,-13.0641,-197.137 0/1:53:42,11:42:1624:11:444:-24.3607,0,-130.439 dDocent_Contig_6051 56 . A T 198.673 . AB=0.140187;ABP=123.334;AC=3;AF=0.5;AN=6;AO=15;CIGAR=1X;DP=107;DPB=107;DPRA=0;EPP=35.5824;EPPR=202.786;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=6.93889e-18;PAIRED=1;PAIREDR=0.98913;PAO=0;PQA=0;PQR=0;PRO=0;QA=607;QR=3587;RO=92;RPL=15;RPP=35.5824;RPPR=202.786;RPR=0;RUN=1;SAF=15;SAP=35.5824;SAR=0;SRF=92;SRP=202.786;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:57:49,8:49:1907:8:326:-12.5512,0,-154.67 0/1:13:12,1:12:457:1:41:-0.181177,0,-37.5637 0/1:37:31,6:31:1223:6:240:-10.8368,0,-99.2105 dDocent_Contig_6052 7 . A T 811.282 . AB=0.223464;ABP=121.908;AC=2;AF=0.333333;AN=6;AO=42;CIGAR=1X;DP=203;DPB=203;DPRA=0;EPP=94.2121;EPPR=352.617;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=0.993789;PAO=0;PQA=0;PQR=0;PRO=0;QA=1607;QR=6119;RO=161;RPL=0;RPP=94.2121;RPPR=352.617;RPR=42;RUN=1;SAF=42;SAP=94.2121;SAR=0;SRF=161;SRP=352.617;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:120:96,24:96:3641:24:916:-46.632,0,-291.69 0/0:24:22,2:22:851:2:75:0,-0.104376,-69.7923 0/1:59:43,16:43:1627:16:616:-38.0179,0,-128.936 dDocent_Contig_6053 32 . C G 42.4104 . AB=0.109375;ABP=87.8334;AC=1;AF=0.166667;AN=6;AO=10;CIGAR=1X;DP=258;DPB=258;DPRA=2.43182;EPP=24.725;EPPR=539.364;GTI=0;LEN=1;MEANALT=1.5;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=400;QR=9866;RO=247;RPL=0;RPP=24.725;RPPR=539.364;RPR=10;RUN=1;SAF=10;SAP=24.725;SAR=0;SRF=247;SRP=539.364;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:150:147,3:147:5902:3:123:0,-33.6897,-519.484 0/0:44:44,0:44:1743:0:0:0,-13.2453,-157.087 0/1:64:56,7:56:2221:7:277:-6.06493,0,-180.838 dDocent_Contig_6054 103 . N T 133.461 . AB=0;ABP=0;AC=4;AF=1;AN=4;AO=6;CIGAR=5X;DP=6;DPB=6;DPRA=0;EPP=16.0391;EPPR=0;GTI=0;LEN=1;MEANALT=1;MQM=23.6667;MQMR=0;NS=2;NUMALT=1;ODDS=0;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=207;QR=0;RO=0;RPL=0;RPP=16.0391;RPPR=0;RPR=6;RUN=1;SAF=0;SAP=16.0391;SAR=6;SRF=0;SRP=0;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL .:.:.:.:.:.:.:. 1|1:1:0,1:0:0:1:35:-2.17889,-0.30103,0 1|1:5:0,5:0:0:5:172:-10.8636,-1.50515,0 dDocent_Contig_6056 58 . C A 2202.6 . AB=0.230277;ABP=299.372;AC=3;AF=0.5;AN=6;AO=108;CIGAR=1X;DP=469;DPB=469;DPRA=0;EPP=237.529;EPPR=786.912;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=0.972299;PAO=0;PQA=0;PQR=0;PRO=0;QA=4068;QR=13351;RO=361;RPL=108;RPP=237.529;RPPR=786.912;RPR=0;RUN=1;SAF=108;SAP=237.529;SAR=0;SRF=361;SRP=786.912;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:213:139,74:139:5214:74:2805:-188.511,0,-405.143 0/1:121:102,19:102:3797:19:722:-28.8862,0,-305.434 0/1:135:120,15:120:4340:15:541:-8.3862,0,-350.107 dDocent_Contig_6057 62 . T A 189.509 . AB=0.171429;ABP=68.6508;AC=2;AF=0.333333;AN=6;AO=13;CIGAR=1X;DP=84;DPB=84;DPRA=0;EPP=31.2394;EPPR=157.185;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=516;QR=2616;RO=71;RPL=13;RPP=31.2394;RPPR=157.185;RPR=0;RUN=1;SAF=13;SAP=31.2394;SAR=0;SRF=71;SRP=157.185;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:43:34,9:34:1277:9:363:-20.0902,0,-102.267 0/0:14:13,1:13:462:1:41:0,-0.119853,-37.8151 0/1:27:24,3:24:877:3:112:-2.31809,0,-71.1223 dDocent_Contig_6059 19 . C T 618.335 . AB=0.292135;ABP=36.4119;AC=3;AF=0.5;AN=6;AO=26;CIGAR=1X;DP=89;DPB=89;DPRA=0;EPP=59.4686;EPPR=131.265;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=48.2698;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=0.730159;PAO=0;PQA=0;PQR=0;PRO=0;QA=1034;QR=2490;RO=63;RPL=0;RPP=59.4686;RPPR=139.813;RPR=26;RUN=1;SAF=26;SAP=59.4686;SAR=0;SRF=62;SRP=131.265;SRR=1;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:43:27,16:27:1075:16:639:-44.9008,0,-65.1751 0/1:17:14,3:14:558:3:119:-5.97699,0,-43.1798 0/1:29:22,7:22:857:7:276:-16.4786,0,-54.7037 dDocent_Contig_6060 10 . C T 31.2872 . AB=0.1;ABP=100.292;AC=1;AF=0.166667;AN=6;AO=7;CIGAR=1X;DP=169;DPB=169;DPRA=1.41414;EPP=18.2106;EPPR=354.789;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=3.46945e-18;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=285;QR=6475;RO=162;RPL=0;RPP=18.2106;RPPR=354.789;RPR=7;RUN=1;SAF=7;SAP=18.2106;SAR=0;SRF=162;SRP=354.789;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:67:67,0:67:2685:0:0:0,-20.169,-241.767 0/0:32:32,0:32:1283:0:0:0,-9.63296,-115.734 0/1:70:63,7:63:2507:7:285:-4.95231,0,-204.692 dDocent_Contig_6061 121 . T G 241.766 . AB=0.27451;ABP=25.534;AC=2;AF=0.333333;AN=6;AO=14;CIGAR=1X;DP=73;DPB=73;DPRA=1.15909;EPP=33.4109;EPPR=131.127;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=3.46945e-18;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=471;QR=1968;RO=59;RPL=0;RPP=33.4109;RPPR=131.127;RPR=14;RUN=1;SAF=0;SAP=33.4109;SAR=14;SRF=0;SRP=131.127;SRR=59;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:27:18,9:18:606:9:298:-19.0141,0,-46.7291 0/0:22:22,0:22:721:0:0:0,-6.62266,-65.1995 0/1:24:19,5:19:641:5:173:-8.68544,0,-50.7828 dDocent_Contig_6062 9 . C T 416.106 . AB=0.216495;ABP=70.7289;AC=2;AF=0.333333;AN=6;AO=23;CIGAR=1X;DP=194;DPB=194;DPRA=0;EPP=52.9542;EPPR=374.332;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=0.988304;PAO=0;PQA=0;PQR=0;PRO=0;QA=893;QR=6597;RO=171;RPL=0;RPP=52.9542;RPPR=374.332;RPR=23;RUN=1;SAF=23;SAP=52.9542;SAR=0;SRF=171;SRP=374.332;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:97:95,2:95:3669:2:75:0,-22.0803,-323.201 0/1:24:18,6:18:698:6:233:-14.1154,0,-55.9295 0/1:73:58,15:58:2230:15:585:-31.0181,0,-178.943 dDocent_Contig_6063 32 . C T 216.14 . AB=0.122449;ABP=63.6786;AC=0;AF=0;AN=6;AO=6;CIGAR=2X;DP=90;DPB=90;DPRA=1.96;EPP=16.0391;EPPR=157.185;GTI=0;LEN=1;MEANALT=2;MQM=60;MQMR=60;NS=3;NUMALT=2;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=241;QR=2824;RO=71;RPL=0;RPP=16.0391;RPPR=157.185;RPR=6;RUN=1;SAF=6;SAP=16.0391;SAR=0;SRF=71;SRP=157.185;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|0:49:35,6,8:35:1405:6,8:241,324:-16.1819,-6.86009,-120.82,0,-95.909,-113.36 0|0:16:12,0,4:12:471:0,4:0,149:-8.95498,-12.5673,-51.3141,0,-39.1239,-37.9198 0|0:25:24,0,1:24:948:0,1:0,40:0,-7.22472,-85.227,-3.53007,-81.9318,-81.6307 dDocent_Contig_6064 39 . C T 408.437 . AB=0.157576;ABP=171.056;AC=3;AF=0.5;AN=6;AO=26;CIGAR=1X4M;DP=165;DPB=165;DPRA=0;EPP=59.4686;EPPR=276.616;GTI=0;LEN=1;MEANALT=2;MQM=60;MQMR=60;NS=3;NUMALT=2;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=1013;QR=4949;RO=126;RPL=0;RPP=59.4686;RPPR=276.616;RPR=26;RUN=1;SAF=26;SAP=59.4686;SAR=0;SRF=126;SRP=276.616;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|1:71:58,7,6:58:2270:7,6:256,241:-3.42932,0,-184.519,-1.01409,-166.767,-185.866 0|1:39:30,2,7:30:1190:2,7:76,278:-13.8688,-16.671,-114.025,0,-91.7406,-95.8649 0|1:55:38,4,13:38:1489:4,13:155,494:-29.0495,-27.7537,-148.993,0,-109.706,-118.525 dDocent_Contig_6065 16 . G T 600.204 . AB=0.303797;ABP=29.4253;AC=3;AF=0.5;AN=6;AO=24;CIGAR=1X;DP=79;DPB=79;DPRA=0;EPP=55.1256;EPPR=122.441;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=969;QR=2130;RO=55;RPL=0;RPP=55.1256;RPPR=122.441;RPR=24;RUN=1;SAF=24;SAP=55.1256;SAR=0;SRF=55;SRP=122.441;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:51:30,21:30:1128:21:847:-61.1895,0,-86.436 0/1:18:16,2:16:644:2:81:-2.26719,0,-52.8754 0/1:10:9,1:9:358:1:41:-1.08427,0,-29.5718 dDocent_Contig_6066 8 . A G 52.3525 . AB=0.181818;ABP=22.3561;AC=1;AF=0.166667;AN=6;AO=10;CIGAR=1X;DP=100;DPB=100;DPRA=0;EPP=24.725;EPPR=198.443;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=368;QR=3442;RO=90;RPL=0;RPP=24.725;RPPR=198.443;RPR=10;RUN=1;SAF=10;SAP=24.725;SAR=0;SRF=90;SRP=198.443;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:58:53,5:53:2017:5:182:0,-0.727934,-165.037 0/1:22:18,4:18:693:4:148:-7.05888,0,-56.0816 0/0:20:19,1:19:732:1:38:0,-2.22333,-62.4131 dDocent_Contig_6068 43 . C T 330.175 . AB=0.136364;ABP=104.082;AC=1;AF=0.166667;AN=6;AO=19;CIGAR=1M1X14M;DP=182;DPB=169.812;DPRA=0;EPP=44.2683;EPPR=276.616;GTI=0;LEN=1;MEANALT=5.66667;MQM=60;MQMR=60;NS=3;NUMALT=3;ODDS=0;PAIRED=0;PAIREDR=0.666667;PAO=0;PQA=0;PQR=0;PRO=0;QA=689;QR=4475;RO=126;RPL=19;RPP=44.2683;RPPR=276.616;RPR=0;RUN=1;SAF=19;SAP=44.2683;SAR=0;SRF=126;SRP=276.616;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|0:94:73,4,2,7:73:2578:4,2,7:141,58,246:0,-10.4795,-219.28,-17.9016,-216.409,-227.288,-1.92123,-200.461,-207.867,-209.835 0|0:50:28,10,6,4:28:1020:10,6,4:350,141,150:-20.083,0,-80.3716,-18.8857,-73.742,-100.41,-16.2099,-71.0907,-89.9277,-98.3668 0|1:38:25,1,2,8:25:877:1,2,8:35,54,293:-16.4574,-21.1349,-92.2103,-20.2851,-88.8007,-91.0462,0,-68.5591,-67.6976,-68.9988 dDocent_Contig_6069 8 . A T 910.342 . AB=0.182456;ABP=252.623;AC=2;AF=0.333333;AN=6;AO=57;CIGAR=1X;DP=356;DPB=356;DPRA=0;EPP=126.784;EPPR=652.281;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=2190;QR=11387;RO=299;RPL=0;RPP=126.784;RPPR=652.281;RPR=57;RUN=1;SAF=57;SAP=126.784;SAR=0;SRF=299;SRP=652.281;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:202:162,40:162:6178:40:1529:-77.07,0,-495.159 0/0:71:66,5:66:2505:5:193:0,-3.63164,-207.914 0/1:83:71,12:71:2704:12:468:-17.4871,0,-218.563 dDocent_Contig_6070 22 . T C 325.456 . AB=0.213333;ABP=56.5443;AC=1;AF=0.166667;AN=6;AO=26;CIGAR=2X;DP=295;DPB=295;DPRA=0;EPP=59.4686;EPPR=584.965;GTI=0;LEN=1;MEANALT=1.33333;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=1028;QR=10395;RO=268;RPL=0;RPP=59.4686;RPPR=584.965;RPR=26;RUN=1;SAF=26;SAP=59.4686;SAR=0;SRF=268;SRP=584.965;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|0:189:180,8:180:7029:8:318:0,-28.0081,-603.402 0|0:31:29,2:29:1090:2:81:0,-1.6462,-90.7139 0|1:75:59,16:59:2276:16:629:-34.3695,0,-182.461 dDocent_Contig_6071 12 . C G 56.648 . AB=0.114943;ABP=115.053;AC=2;AF=0.333333;AN=6;AO=16;CIGAR=1X2M1X;DP=169;DPB=169;DPRA=0;EPP=37.7539;EPPR=333.074;GTI=0;LEN=1;MEANALT=1.33333;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=626;QR=6015;RO=152;RPL=0;RPP=37.7539;RPPR=333.074;RPR=16;RUN=1;SAF=16;SAP=37.7539;SAR=0;SRF=152;SRP=333.074;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|0:82:76,6:76:2980:6:240:0,-2.70843,-246.334 0|1:34:29,5:29:1153:5:192:-7.41063,0,-93.82 0|1:53:47,5:47:1882:5:194:-1.77148,0,-153.525 dDocent_Contig_6072 13 . A T 473.626 . AB=0.418605;ABP=5.48477;AC=3;AF=0.5;AN=6;AO=18;CIGAR=1X;DP=43;DPB=43;DPRA=0;EPP=42.0968;EPPR=57.2971;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=719;QR=1002;RO=25;RPL=0;RPP=42.0968;RPPR=57.2971;RPR=18;RUN=1;SAF=18;SAP=42.0968;SAR=0;SRF=25;SRP=57.2971;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:17:9,8:9:362:8:316:-23.6834,0,-27.826 0/1:15:9,6:9:355:6:245:-17.914,0,-27.7947 0/1:11:7,4:7:285:4:158:-11.288,0,-22.7131 dDocent_Contig_6073 8 . A G 411.396 . AB=0.333333;ABP=16.763;AC=3;AF=0.5;AN=6;AO=19;CIGAR=1X;DP=57;DPB=57;DPRA=0;EPP=44.2683;EPPR=85.5263;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=696;QR=1432;RO=38;RPL=0;RPP=44.2683;RPPR=85.5263;RPR=19;RUN=1;SAF=19;SAP=44.2683;SAR=0;SRF=38;SRP=85.5263;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:28:14,14:14:540:14:505:-37.3501,0,-40.5164 0/1:12:9,3:9:335:3:115:-7.11267,0,-26.8885 0/1:17:15,2:15:557:2:76:-2.09716,0,-45.3474 dDocent_Contig_6074 116 . G C 325.644 . AB=0.179487;ABP=142.207;AC=2;AF=0.333333;AN=6;AO=28;CIGAR=1X;DP=198;DPB=198;DPRA=1.85714;EPP=63.8115;EPPR=372.161;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=916;QR=5826;RO=170;RPL=0;RPP=63.8115;RPPR=372.161;RPR=28;RUN=1;SAF=0;SAP=63.8115;SAR=28;SRF=0;SRP=372.161;SRR=170;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:114:92,22:92:3173:22:740:-32.5952,0,-251.488 0/1:42:36,6:36:1218:6:176:-3.48732,0,-97.2741 0/0:42:42,0:42:1435:0:0:0,-12.6433,-129.444 dDocent_Contig_6075 9 . C A 481.587 . AB=0.139932;ABP=332.963;AC=3;AF=0.5;AN=6;AO=41;CIGAR=1X;DP=293;DPB=293;DPRA=0;EPP=92.0407;EPPR=550.221;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=1.38778e-17;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=1565;QR=9676;RO=252;RPL=0;RPP=92.0407;RPPR=550.221;RPR=41;RUN=1;SAF=41;SAP=92.0407;SAR=0;SRF=252;SRP=550.221;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:160:141,19:141:5410:19:725:-17.4145,0,-438.722 0/1:50:41,9:41:1559:9:344:-16.2662,0,-125.527 0/1:83:70,13:70:2707:13:496:-20.0009,0,-218.825 dDocent_Contig_6076 82 . T A 32.599 . AB=0.214286;ABP=12.937;AC=2;AF=0.333333;AN=6;AO=3;CIGAR=1X;DP=25;DPB=25;DPRA=0.636364;EPP=9.52472;EPPR=50.7827;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=109;QR=773;RO=22;RPL=3;RPP=9.52472;RPPR=50.7827;RPR=0;RUN=1;SAF=3;SAP=9.52472;SAR=0;SRF=22;SRP=50.7827;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:7:5,2:5:179:2:72:-4.72951,0,-14.3532 0/1:7:6,1:6:215:1:37:-1.59062,0,-17.5917 0/0:11:11,0:11:379:0:0:0,-3.31133,-34.4417 dDocent_Contig_6077 16 . T C 2592.16 . AB=0.167436;ABP=834.93;AC=3;AF=0.5;AN=6;AO=145;CIGAR=1X;DP=866;DPB=866;DPRA=0;EPP=317.874;EPPR=1564.3;GTI=0;LEN=1;MEANALT=1.66667;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=5.55112e-17;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=5834;QR=28424;RO=719;RPL=0;RPP=317.874;RPPR=1564.3;RPR=145;RUN=1;SAF=145;SAP=317.874;SAR=0;SRF=719;SRP=1564.3;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:534:442,91:442:17494:91:3652:-167.836,0,-1412.25 0/1:114:99,15:99:3886:15:612:-21.0997,0,-315.43 0/1:218:178,39:178:7044:39:1570:-75.8027,0,-567.914 dDocent_Contig_6078 107 . N G 52.2474 . AB=0;ABP=0;AC=2;AF=1;AN=2;AO=2;CIGAR=1X;DP=2;DPB=2;DPRA=0;EPP=7.35324;EPPR=0;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=0;NS=1;NUMALT=1;ODDS=5.99146;PAIRED=1;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=55;QR=0;RO=0;RPL=0;RPP=7.35324;RPPR=0;RPR=2;RUN=1;SAF=0;SAP=7.35324;SAR=2;SRF=0;SRP=0;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 1/1:2:0,2:0:0:2:55:-5.22366,-0.60206,0 ./.:.:.:.:.:.:.:. ./.:.:.:.:.:.:.:. dDocent_Contig_6079 9 . C A 1938.1 . AB=0.450331;ABP=6.24594;AC=3;AF=0.5;AN=6;AO=68;CIGAR=1X3M1X;DP=151;DPB=151;DPRA=0;EPP=150.67;EPPR=135.47;GTI=0;LEN=1;MEANALT=2;MQM=60;MQMR=60;NS=3;NUMALT=2;ODDS=2.77556e-17;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=2649;QR=2371;RO=61;RPL=0;RPP=150.67;RPPR=135.47;RPR=68;RUN=1;SAF=68;SAP=150.67;SAR=0;SRF=61;SRP=135.47;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|1:91:41,35,15:41:1599:35,15:1367,601:-100.029,0,-120.889,-62.8586,-81.9119,-189.775 0|1:28:13,11,4:13:495:11,4:429,157:-31.3482,0,-37.2759,-22.3507,-27.6742,-61.7377 0|1:32:7,22,3:7:277:22,3:853,121:-67.9556,0,-16.1699,-60.0867,-12.816,-81.9833 dDocent_Contig_6080 22 . T A 128.083 . AB=0.24;ABP=17.6895;AC=1;AF=0.166667;AN=6;AO=8;CIGAR=1X;DP=76;DPB=76;DPRA=1.02;EPP=20.3821;EPPR=150.67;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=323;QR=2748;RO=68;RPL=0;RPP=20.3821;RPPR=150.67;RPR=8;RUN=1;SAF=8;SAP=20.3821;SAR=0;SRF=68;SRP=150.67;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:25:25,0:25:1008:0:0:0,-7.52575,-91.0136 0/1:25:19,6:19:765:6:242:-14.6312,0,-61.6451 0/0:26:24,2:24:975:2:81:0,-0.141046,-80.3605 dDocent_Contig_6081 7 . A G 7697.77 . AB=0.0942029;ABP=397.778;AC=0;AF=0;AN=6;AO=26;CIGAR=1X3M2I3M;DP=326;DPB=404;DPRA=0;EPP=59.4686;EPPR=118.098;GTI=0;LEN=1;MEANALT=2.5;MQM=60;MQMR=60;NS=3;NUMALT=2;ODDS=2.77556e-17;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=962;QR=2044;RO=53;RPL=0;RPP=59.4686;RPPR=118.098;RPR=26;RUN=1;SAF=26;SAP=59.4686;SAR=0;SRF=53;SRP=118.098;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|0:172:24,14,134:24:943:14,134:513,5245:-423.993,-389.295,-462.645,0,-35.666,-37.2429 0|0:50:7,0,43:7:272:0,43:0,1665:-135.033,-137.14,-159.492,0,-22.7396,-9.79527 0|0:104:22,12,69:22:829:12,69:449,2710:-216.274,-186.131,-250.444,0,-31.1666,-47.1639 dDocent_Contig_6082 55 . A C 863.28 . AB=0.227273;ABP=116.716;AC=2;AF=0.333333;AN=6;AO=43;CIGAR=1X;DP=224;DPB=224;DPRA=0;EPP=96.3836;EPPR=396.047;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=1696;QR=7247;RO=181;RPL=43;RPP=96.3836;RPPR=396.047;RPR=0;RUN=1;SAF=43;SAP=96.3836;SAR=0;SRF=181;SRP=396.047;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:109:96,13:96:3854:13:520:-14.3347,0,-314.048 0/0:48:45,3:45:1805:3:116:0,-3.63245,-151.849 0/1:67:40,27:40:1588:27:1060:-75.5162,0,-122.991 dDocent_Contig_6083 7 . A T 1762.8 . AB=0.776316;ABP=53.4113;AC=3;AF=0.5;AN=6;AO=59;CIGAR=1X;DP=76;DPB=76;DPRA=0;EPP=131.127;EPPR=39.9253;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=2263;QR=657;RO=17;RPL=0;RPP=131.127;RPPR=39.9253;RPR=59;RUN=1;SAF=59;SAP=131.127;SAR=0;SRF=17;SRP=39.9253;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:49:5,44:5:193:44:1678:-136.533,0,-2.99089 0/1:11:7,4:7:273:4:156:-11.106,0,-21.6267 0/1:16:5,11:5:191:11:429:-34.1492,0,-12.7422 dDocent_Contig_6084 123 . A G 970.502 . AB=0.378151;ABP=18.3566;AC=3;AF=0.5;AN=6;AO=45;CIGAR=1X;DP=119;DPB=119;DPRA=0;EPP=100.727;EPPR=163.699;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=1527;QR=2506;RO=74;RPL=0;RPP=100.727;RPPR=163.699;RPR=45;RUN=1;SAF=0;SAP=100.727;SAR=45;SRF=0;SRP=163.699;SRR=74;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:77:45,32:45:1518:32:1086:-74.8632,0,-113.732 0/1:23:17,6:17:590:6:198:-11.2206,0,-46.5034 0/1:19:12,7:12:398:7:243:-16.4893,0,-30.4209 dDocent_Contig_6085 92 . T A 733.294 . AB=0.485294;ABP=3.13803;AC=3;AF=0.5;AN=6;AO=33;CIGAR=1X;DP=68;DPB=68;DPRA=0;EPP=74.6689;EPPR=79.0118;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=0.969697;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=1093;QR=1097;RO=35;RPL=33;RPP=74.6689;RPPR=79.0118;RPR=0;RUN=1;SAF=33;SAP=74.6689;SAR=0;SRF=35;SRP=79.0118;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:32:12,20:12:375:20:685:-52.3377,0,-24.4197 0/1:16:12,4:12:361:4:137:-7.85173,0,-27.9668 0/1:20:11,9:11:361:9:271:-18.6629,0,-26.7885 dDocent_Contig_6087 11 . C G 78.4716 . AB=0.134615;ABP=63.3104;AC=1;AF=0.166667;AN=6;AO=8;CIGAR=1X;DP=99;DPB=99;DPRA=1.75;EPP=20.3821;EPPR=200.614;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=315;QR=3612;RO=91;RPL=0;RPP=20.3821;RPPR=200.614;RPR=8;RUN=1;SAF=8;SAP=20.3821;SAR=0;SRF=91;SRP=200.614;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:52:45,7:45:1796:7:274:-9.37004,0,-146.201 0/0:22:22,0:22:863:0:0:0,-6.62266,-77.9839 0/0:25:24,1:24:953:1:41:0,-3.43118,-81.9769 dDocent_Contig_6088 70 . T C 276.893 . AB=0.280702;ABP=26.8203;AC=2;AF=0.333333;AN=6;AO=17;CIGAR=1X;DP=69;DPB=69;DPRA=0;EPP=39.9253;EPPR=115.927;GTI=0;LEN=1;MEANALT=1;MQM=48.5294;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=0;PAIREDR=0.980769;PAO=0;PQA=0;PQR=0;PRO=0;QA=567;QR=1757;RO=52;RPL=17;RPP=39.9253;RPPR=115.927;RPR=0;RUN=1;SAF=17;SAP=39.9253;SAR=0;SRF=52;SRP=115.927;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:44:35,9:35:1170:9:293:-13.2683,0,-92.35 0/1:13:6,7:6:221:7:241:-17.9432,0,-16.3334 0/0:12:11,1:11:366:1:33:0,-0.338919,-29.9887 dDocent_Contig_6089 17 . T C 3615.52 . AB=0.57767;ABP=13.8044;AC=3;AF=0.5;AN=6;AO=119;CIGAR=1X;DP=206;DPB=206;DPRA=0;EPP=261.416;EPPR=191.928;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=4760;QR=3458;RO=87;RPL=0;RPP=261.416;RPPR=191.928;RPR=119;RUN=1;SAF=119;SAP=261.416;SAR=0;SRF=87;SRP=191.928;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:132:37,95:37:1467:95:3809:-303.062,0,-92.5388 0/1:36:28,8:28:1109:8:323:-18.6019,0,-89.2539 0/1:38:22,16:22:882:16:628:-45.4108,0,-68.2479 dDocent_Contig_6090 79 . A T 122.762 . AB=0.205128;ABP=32.4644;AC=1;AF=0.166667;AN=6;AO=8;CIGAR=1X;DP=84;DPB=84;DPRA=1.73333;EPP=20.3821;EPPR=168.042;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=280;QR=2683;RO=76;RPL=8;RPP=20.3821;RPPR=168.042;RPR=0;RUN=1;SAF=8;SAP=20.3821;SAR=0;SRF=76;SRP=168.042;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:39:31,8:31:1113:8:280:-13.7991,0,-88.7366 0/0:23:23,0:23:821:0:0:0,-6.92369,-74.2108 0/0:22:22,0:22:749:0:0:0,-6.62266,-67.724 dDocent_Contig_6091 49 . G A 179.472 . AB=0.125786;ABP=196.408;AC=3;AF=0.5;AN=6;AO=20;CIGAR=1M3I2M1X;DP=159;DPB=174;DPRA=0;EPP=46.4397;EPPR=262.978;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=0.985612;PAO=0;PQA=0;PQR=0;PRO=0;QA=768;QR=5405;RO=139;RPL=0;RPP=46.4397;RPPR=262.978;RPR=20;RUN=1;SAF=20;SAP=46.4397;SAR=0;SRF=139;SRP=304.845;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|1:110:95,15:95:3703:15:579:-19.3376,0,-300.226 0|1:18:16,2:16:624:2:78:-1.98493,0,-51.0791 0|1:31:28,3:28:1078:3:111:-1.02019,0,-87.9832 dDocent_Contig_6092 14 . G A 1421.68 . AB=0.131783;ABP=154.929;AC=3;AF=0.5;AN=6;AO=17;CIGAR=1X1M;DP=129;DPB=129;DPRA=0;EPP=39.9253;EPPR=131.127;GTI=0;LEN=1;MEANALT=2.33333;MQM=56;MQMR=60;NS=3;NUMALT=2;ODDS=0;PAIRED=0;PAIREDR=0.881356;PAO=0;PQA=0;PQR=0;PRO=0;QA=673;QR=2301;RO=59;RPL=0;RPP=39.9253;RPPR=131.127;RPR=17;RUN=1;SAF=17;SAP=39.9253;SAR=0;SRF=59;SRP=131.127;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|1:42:19,20,2:19:745:20,2:800,82:-57.82,0,-55.2282,-56.7842,-54.4937,-117.448 0|1:55:26,20,9:26:1012:20,9:797,352:-56.1456,0,-77.1458,-35.083,-54.2771,-115.541 0|1:32:14,12,6:14:544:12,6:479,239:-33.7249,0,-41.0828,-18.288,-25.0453,-61.1852 dDocent_Contig_6094 32 . G T 396.817 . AB=0.278689;ABP=28.9612;AC=2;AF=0.333333;AN=6;AO=18;CIGAR=1X;DP=81;DPB=81;DPRA=0;EPP=42.0968;EPPR=139.813;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=0.555556;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=712;QR=2481;RO=63;RPL=0;RPP=42.0968;RPPR=139.813;RPR=18;RUN=1;SAF=18;SAP=42.0968;SAR=0;SRF=63;SRP=139.813;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:36:26,10:26:1041:10:402:-25.7032,0,-83.1465 0/1:25:18,7:18:688:7:274:-17.5014,0,-54.7233 0/0:20:19,1:19:752:1:36:0,-2.42232,-64.4008 dDocent_Contig_6096 1 . N A 711.653 . AB=0;ABP=0;AC=6;AF=1;AN=6;AO=21;CIGAR=1X;DP=21;DPB=21;DPRA=0;EPP=48.6112;EPPR=0;GTI=0;LEN=1;MEANALT=1;MQM=53.8571;MQMR=0;NS=3;NUMALT=1;ODDS=0;PAIRED=0.047619;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=844;QR=0;RO=0;RPL=0;RPP=48.6112;RPPR=0;RPR=21;RUN=1;SAF=21;SAP=48.6112;SAR=0;SRF=0;SRP=0;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 1/1:15:0,15:0:0:15:611:-50.9821,-4.51545,0 1/1:3:0,3:0:0:3:112:-10.4453,-0.90309,0 1/1:3:0,3:0:0:3:121:-9.13558,-0.90309,0 dDocent_Contig_6097 32 . T A 1340.49 . AB=0.335484;ABP=39.449;AC=2;AF=0.333333;AN=6;AO=52;CIGAR=1X;DP=165;DPB=165;DPRA=7.75;EPP=115.927;EPPR=246.215;GTI=0;LEN=1;MEANALT=1.5;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=2038;QR=3998;RO=112;RPL=0;RPP=115.927;RPPR=246.215;RPR=52;RUN=1;SAF=52;SAP=115.927;SAR=0;SRF=112;SRP=246.215;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:119:76,42:76:2692:42:1648:-112.953,0,-206.888 0/0:10:10,0:10:377:0:0:0,-3.0103,-34.2824 0/1:36:26,10:26:929:10:390:-24.6196,0,-73.0824 dDocent_Contig_6098 21 . G A 8706.45 . AB=0.121212;ABP=578.779;AC=0;AF=0;AN=6;AO=56;CIGAR=2X;DP=462;DPB=462;DPRA=0;EPP=124.613;EPPR=261.416;GTI=0;LEN=1;MEANALT=2;MQM=60;MQMR=60;NS=3;NUMALT=2;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=2172;QR=4554;RO=119;RPL=0;RPP=124.613;RPPR=261.416;RPR=56;RUN=1;SAF=56;SAP=124.613;SAR=0;SRF=119;SRP=261.416;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|0:322:77,41,204:77:2973:41,204:1603,7852:-621.343,-512.742,-744.546,0,-112.363,-182.733 0|0:47:14,2,31:14:498:2,31:82,1186:-93.0631,-90.5077,-130.471,0,-33.7517,-31.1947 0|0:93:28,13,52:28:1083:13,52:487,2067:-161.762,-130.323,-215.361,0,-49.095,-73.31 dDocent_Contig_6099 19 . C T 71.4827 . AB=0.210526;ABP=16.8392;AC=1;AF=0.166667;AN=6;AO=11;CIGAR=1X;DP=150;DPB=150;DPRA=0;EPP=26.8965;EPPR=304.845;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=443;QR=5501;RO=139;RPL=0;RPP=26.8965;RPPR=304.845;RPR=11;RUN=1;SAF=11;SAP=26.8965;SAR=0;SRF=139;SRP=304.845;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:102:96,6:96:3825:6:243:0,-8.45746,-321.998 0/1:19:15,4:15:581:4:159:-8.97218,0,-46.9042 0/0:29:28,1:28:1095:1:41:0,-4.6353,-94.7356 dDocent_Contig_6100 8 . A G 2146.24 . AB=0.189815;ABP=364.038;AC=1;AF=0.166667;AN=6;AO=82;CIGAR=2X;DP=432;DPB=432;DPRA=0;EPP=181.071;EPPR=556.736;GTI=0;LEN=1;MEANALT=2.66667;MQM=60;MQMR=60;NS=3;NUMALT=2;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=3042;QR=9772;RO=255;RPL=0;RPP=181.071;RPPR=556.736;RPR=82;RUN=1;SAF=82;SAP=181.071;SAR=0;SRF=255;SRP=556.736;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|1:269:178,47,43:178:6815:47,43:1734,1647:-88.2171,0,-545.129,-6.62781,-424.111,-552.972 0|0:26:14,5,7:14:537:5,7:181,269:-17.8819,-7.3305,-49.9027,0,-29.3242,-41.9865 0|0:137:63,30,43:63:2420:30,43:1127,1623:-114.048,-40.6837,-230.315,0,-106.337,-185.72 dDocent_Contig_6101 14 . T C 766.573 . AB=0.316456;ABP=26.1269;AC=3;AF=0.5;AN=6;AO=25;CIGAR=1X4M;DP=79;DPB=78.8;DPRA=0;EPP=57.2971;EPPR=79.0118;GTI=0;LEN=1;MEANALT=2.33333;MQM=60;MQMR=60;NS=3;NUMALT=2;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=1000;QR=1350;RO=35;RPL=0;RPP=57.2971;RPPR=79.0118;RPR=25;RUN=1;SAF=25;SAP=57.2971;SAR=0;SRF=35;SRP=79.0118;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|1:49:21,16,12:21:819:16,12:608,484:-43.5193,0,-62.4946,-9.93567,-27.411,-73.6485 0|1:11:5,1,3:5:189:1,3:40,122:-8.5647,-6.77477,-21.955,0,-12.1852,-14.5795 0|1:19:9,0,10:9:342:0,10:0,394:-30.0962,-32.8054,-60.8457,0,-28.4266,-25.4163 dDocent_Contig_6102 17 . G A 51.464 . AB=0.125;ABP=61.6401;AC=2;AF=0.333333;AN=6;AO=6;CIGAR=1X;DP=92;DPB=92;DPRA=0.545455;EPP=16.0391;EPPR=189.757;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=245;QR=3425;RO=86;RPL=0;RPP=16.0391;RPPR=189.757;RPR=6;RUN=1;SAF=6;SAP=16.0391;SAR=0;SRF=86;SRP=189.757;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:44:44,0:44:1732:0:0:0,-13.2453,-156.107 0/1:21:19,2:19:760:2:82:-1.45805,0,-62.3998 0/1:27:23,4:23:933:4:163:-6.93062,0,-76.1437 dDocent_Contig_6103 121 . T C 2414.32 . AB=0.617834;ABP=21.945;AC=3;AF=0.5;AN=6;AO=97;CIGAR=1X;DP=157;DPB=157;DPRA=0;EPP=213.643;EPPR=133.299;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=3259;QR=2005;RO=60;RPL=0;RPP=213.643;RPPR=133.299;RPR=97;RUN=1;SAF=0;SAP=213.643;SAR=97;SRF=0;SRP=133.299;SRR=60;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:68:20,48:20:672:48:1621:-125.706,0,-40.3249 0/1:28:18,10:18:589:10:339:-22.4101,0,-44.8928 0/1:61:22,39:22:744:39:1299:-98.838,0,-48.9093 dDocent_Contig_6104 13 . C G 465 . AB=0.0722892;ABP=134.895;AC=0;AF=0;AN=6;AO=6;CIGAR=8M1X;DP=164;DPB=154;DPRA=0;EPP=16.0391;EPPR=278.787;GTI=0;LEN=1;MEANALT=2;MQM=60;MQMR=60;NS=3;NUMALT=2;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=227;QR=4825;RO=127;RPL=0;RPP=16.0391;RPPR=278.787;RPR=6;RUN=1;SAF=6;SAP=16.0391;SAR=0;SRF=127;SRP=278.787;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|0:83:69,8,6:69:2621:8,6:296,227:-3.44041,0,-212.529,-5.60594,-196.336,-218.745 0|0:60:43,16,0:43:1625:16,0:581,0:-34.5608,0,-128.459,-47.5051,-133.275,-180.717 0|0:21:15,6,0:15:579:6,0:222,0:-14.0164,0,-46.1313,-18.5319,-47.9375,-66.0951 dDocent_Contig_6105 1 . N A 585.678 . AB=0;ABP=0;AC=6;AF=1;AN=6;AO=16;CIGAR=1X;DP=16;DPB=16;DPRA=0;EPP=37.7539;EPPR=0;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=0;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=633;QR=0;RO=0;RPL=0;RPP=37.7539;RPPR=0;RPR=16;RUN=1;SAF=16;SAP=37.7539;SAR=0;SRF=0;SRP=0;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 1/1:7:0,7:0:0:7:280:-25.5718,-2.10721,0 1/1:4:0,4:0:0:4:162:-14.967,-1.20412,0 1/1:5:0,5:0:0:5:191:-17.5518,-1.50515,0 dDocent_Contig_6106 27 . T A 1104.6 . AB=0.299065;ABP=40.5342;AC=1;AF=0.166667;AN=6;AO=32;CIGAR=1X1M2I2M;DP=107;DPB=135.5;DPRA=0;EPP=72.4974;EPPR=111.584;GTI=0;LEN=1;MEANALT=2.33333;MQM=60;MQMR=60;NS=3;NUMALT=2;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=1272;QR=1984;RO=50;RPL=0;RPP=72.4974;RPPR=111.584;RPR=32;RUN=1;SAF=32;SAP=72.4974;SAR=0;SRF=50;SRP=111.584;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|1:49:19,23,6:19:763:23,6:911,238:-69.2598,0,-55.9541,-55.3878,-43.2873,-116.457 0|0:18:7,4,7:7:271:4,7:159,260:-19.1497,-8.15658,-29.2176,0,-9.15603,-20.1435 0|0:40:24,5,11:24:950:5,11:202,424:-27.5734,-18.139,-94.8244,0,-61.522,-74.8655 dDocent_Contig_6107 178 . T A 474.998 . AB=0.272727;ABP=37.5565;AC=2;AF=0.333333;AN=6;AO=23;CIGAR=1X;DP=103;DPB=103;DPRA=0;EPP=52.9542;EPPR=176.728;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=891;QR=3154;RO=80;RPL=23;RPP=52.9542;RPPR=176.728;RPR=0;RUN=1;SAF=0;SAP=52.9542;SAR=23;SRF=0;SRP=176.728;SRR=80;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:53:35,18:35:1394:18:718:-48.9903,0,-109.766 0/0:26:24,2:24:937:2:81:0,-0.141046,-76.9409 0/1:24:21,3:21:823:3:92:-1.3518,0,-67.1589 dDocent_Contig_6108 98 . N T 137.862 . AB=0;ABP=0;AC=4;AF=1;AN=4;AO=4;CIGAR=1X;DP=4;DPB=4;DPRA=0;EPP=11.6962;EPPR=0;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=0;NS=2;NUMALT=1;ODDS=0;PAIRED=0.5;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=142;QR=0;RO=0;RPL=4;RPP=11.6962;RPPR=0;RPR=0;RUN=1;SAF=4;SAP=11.6962;SAR=0;SRF=0;SRP=0;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 1/1:2:0,2:0:0:2:72:-6.83672,-0.60206,0 ./.:.:.:.:.:.:.:. 1/1:2:0,2:0:0:2:70:-6.6474,-0.60206,0 dDocent_Contig_6109 8 . A T 8179.63 . AB=0.209414;ABP=1530.03;AC=3;AF=0.5;AN=6;AO=436;CIGAR=1X;DP=2082;DPB=2082;DPRA=0;EPP=949.772;EPPR=3570.74;GTI=0;LEN=1;MEANALT=1.66667;MQM=55.461;MQMR=59.056;NS=3;NUMALT=1;ODDS=1.11022e-16;PAIRED=0.995413;PAIREDR=0.97748;PAO=0;PQA=0;PQR=0;PRO=0;QA=16705;QR=62728;RO=1643;RPL=0;RPP=949.772;RPPR=3570.74;RPR=436;RUN=1;SAF=436;SAP=949.772;SAR=0;SRF=1643;SRP=3570.74;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:1200:950,249:950:36321:249:9574:-467.441,0,-2883.96 0/1:236:178,58:178:6794:58:2203:-121.03,0,-538.408 0/1:646:515,129:515:19613:129:4928:-235.015,0,-1562.62 dDocent_Contig_6115 49 . T C 15142.7 . AB=0.599343;ABP=55.2148;AC=6;AF=1;AN=6;AO=365;CIGAR=1X5M;DP=609;DPB=608.833;DPRA=0;EPP=795.598;EPPR=144.156;GTI=0;LEN=1;MEANALT=4.33333;MQM=60;MQMR=60;NS=3;NUMALT=2;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=14500;QR=2487;RO=65;RPL=365;RPP=795.598;RPPR=144.156;RPR=0;RUN=1;SAF=365;SAP=795.598;SAR=0;SRF=65;SRP=144.156;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 1|1:330:42,96,189:42:1604:96,189:3761,7540:-785.985,-489.373,-592.052,-177.686,0,-252.37 1|1:85:6,24,51:6:231:24,51:938,2024:-222.998,-147.688,-159.428,-58.1908,0,-61.8066 1|1:194:17,51,125:17:652:51,125:1987,4936:-510.81,-352.616,-390.771,-109.809,0,-125.687 dDocent_Contig_6116 51 . C A 46.2217 . AB=0.142857;ABP=34.0313;AC=1;AF=0.166667;AN=6;AO=8;CIGAR=1X;DP=95;DPB=95;DPRA=0;EPP=20.3821;EPPR=191.928;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=288;QR=3366;RO=87;RPL=8;RPP=20.3821;RPPR=191.928;RPR=0;RUN=1;SAF=8;SAP=20.3821;SAR=0;SRF=87;SRP=191.928;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:58:55,3:55:2138:3:120:0,-6.27243,-181.422 0/1:28:24,4:24:930:4:161:-6.44606,0,-75.5724 0/0:9:8,1:8:298:1:7:0,-2.00927,-26.4719 dDocent_Contig_6118 109 . C A 1047.39 . AB=0.608696;ABP=10.0912;AC=3;AF=0.5;AN=6;AO=42;CIGAR=1X;DP=69;DPB=69;DPRA=0;EPP=94.2121;EPPR=61.6401;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=1445;QR=911;RO=27;RPL=0;RPP=94.2121;RPPR=61.6401;RPR=42;RUN=1;SAF=0;SAP=94.2121;SAR=42;SRF=0;SRP=61.6401;SRR=27;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:30:8,22:8:279:22:762:-59.8701,0,-16.4181 0/1:28:14,14:14:458:14:478:-34.9175,0,-33.1051 0/1:11:5,6:5:174:6:205:-15.4738,0,-12.6906 dDocent_Contig_6119 98 . N A 831.418 . AB=0;ABP=0;AC=6;AF=1;AN=6;AO=30;CIGAR=1X;DP=30;DPB=30;DPRA=0;EPP=68.1545;EPPR=0;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=0;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=909;QR=0;RO=0;RPL=30;RPP=68.1545;RPPR=0;RPR=0;RUN=1;SAF=30;SAP=68.1545;SAR=0;SRF=0;SRP=0;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 1/1:18:0,18:0:0:18:549:-49.6997,-5.41854,0 1/1:2:0,2:0:0:2:53:-5.03367,-0.60206,0 1/1:10:0,10:0:0:10:307:-27.931,-3.0103,0 dDocent_Contig_6121 140 . T C 121.039 . AB=0.3125;ABP=7.89611;AC=1;AF=0.166667;AN=6;AO=6;CIGAR=1X;DP=33;DPB=33;DPRA=2.8;EPP=16.0391;EPPR=61.6401;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=1.73472e-18;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=232;QR=1038;RO=27;RPL=0;RPP=16.0391;RPPR=61.6401;RPR=6;RUN=1;SAF=0;SAP=16.0391;SAR=6;SRF=0;SRP=61.6401;SRR=27;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:12:11,1:11:431:1:28:0,-0.812633,-36.3375 0/0:5:5,0:5:186:0:0:0,-1.50515,-17.0954 0/1:16:11,5:11:421:5:204:-13.9276,0,-33.4166 dDocent_Contig_6122 124 . C T 1932.25 . AB=0.721154;ABP=47.1914;AC=3;AF=0.5;AN=6;AO=75;CIGAR=1X;DP=104;DPB=104;DPRA=0;EPP=157.301;EPPR=65.983;GTI=0;LEN=1;MEANALT=1;MQM=59.5867;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=0.986667;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=2558;QR=952;RO=29;RPL=0;RPP=165.871;RPPR=65.983;RPR=75;RUN=1;SAF=1;SAP=157.301;SAR=74;SRF=0;SRP=65.983;SRR=29;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:52:13,39:13:425:39:1328:-104.165,0,-22.912 0/1:16:9,7:9:288:7:237:-16.8452,0,-21.4152 0/1:36:7,29:7:239:29:993:-77.7375,0,-11.007 dDocent_Contig_6123 13 . A G 227.664 . AB=0.191781;ABP=63.2463;AC=3;AF=0.5;AN=6;AO=14;CIGAR=1X;DP=73;DPB=73;DPRA=0;EPP=33.4109;EPPR=131.127;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=546;QR=2352;RO=59;RPL=0;RPP=33.4109;RPPR=131.127;RPR=14;RUN=1;SAF=14;SAP=33.4109;SAR=0;SRF=59;SRP=131.127;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:18:15,3:15:604:3:120:-5.76877,0,-49.2803 0/1:26:20,6:20:800:6:226:-12.871,0,-64.4888 0/1:29:24,5:24:948:5:200:-9.64946,0,-76.8912 dDocent_Contig_6124 37 . A T 534.371 . AB=0.224138;ABP=79.6857;AC=3;AF=0.5;AN=6;AO=26;CIGAR=1X;DP=116;DPB=116;DPRA=0;EPP=59.4686;EPPR=198.443;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=6.93889e-18;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=1031;QR=3576;RO=90;RPL=0;RPP=59.4686;RPPR=198.443;RPR=26;RUN=1;SAF=26;SAP=59.4686;SAR=0;SRF=90;SRP=198.443;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:51:36,15:36:1420:15:586:-37.7194,0,-112.694 0/1:12:10,2:10:383:2:80:-3.97922,0,-31.2048 0/1:53:44,9:44:1773:9:365:-17.2599,0,-143.829 dDocent_Contig_6125 22 . T C 875.056 . AB=0.326923;ABP=30.0702;AC=2;AF=0.333333;AN=6;AO=35;CIGAR=1X;DP=118;DPB=118;DPRA=0;EPP=79.0118;EPPR=183.243;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=6.93889e-18;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=1392;QR=3331;RO=83;RPL=0;RPP=79.0118;RPPR=183.243;RPR=35;RUN=1;SAF=35;SAP=79.0118;SAR=0;SRF=83;SRP=183.243;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:67:50,17:50:2014:17:670:-40.4572,0,-161.275 0/0:14:13,1:13:509:1:40:0,-0.218741,-42.1554 0/1:37:20,17:20:808:17:682:-50.5704,0,-61.8979 dDocent_Contig_6126 84 . C T 224.749 . AB=0.146341;ABP=181.177;AC=2;AF=0.333333;AN=6;AO=24;CIGAR=1X;DP=180;DPB=180;DPRA=5.125;EPP=55.1256;EPPR=341.76;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=0.987179;PAO=0;PQA=0;PQR=0;PRO=0;QA=825;QR=5506;RO=156;RPL=24;RPP=55.1256;RPPR=341.76;RPR=0;RUN=1;SAF=24;SAP=55.1256;SAR=0;SRF=156;SRP=341.76;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:106:88,18:88:3117:18:617:-23.9437,0,-248.848 0/0:16:16,0:16:558:0:0:0,-4.81648,-50.5456 0/1:58:52,6:52:1831:6:208:-1.5999,0,-147.612 dDocent_Contig_6127 17 . C A 471.034 . AB=0.375;ABP=9.52472;AC=2;AF=0.333333;AN=6;AO=19;CIGAR=1M5I2M1X;DP=64;DPB=87.75;DPRA=0;EPP=44.2683;EPPR=100.727;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=3.46945e-18;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=754;QR=1763;RO=45;RPL=0;RPP=44.2683;RPPR=100.727;RPR=19;RUN=1;SAF=19;SAP=44.2683;SAR=0;SRF=45;SRP=100.727;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|1:33:19,14:19:735:14:557:-40.5412,0,-56.5341 0|0:16:15,1:15:588:1:39:0,-0.919915,-49.3651 0|1:15:11,4:11:440:4:158:-10.0848,0,-35.4409 dDocent_Contig_6128 12 . G A 135.936 . AB=0.127451;ABP=125.975;AC=2;AF=0.333333;AN=6;AO=16;CIGAR=1X;DP=158;DPB=158;DPRA=0;EPP=37.7539;EPPR=311.359;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=59.5141;NS=3;NUMALT=1;ODDS=6.93889e-18;PAIRED=1;PAIREDR=0.992958;PAO=0;PQA=0;PQR=0;PRO=0;QA=642;QR=5653;RO=142;RPL=0;RPP=37.7539;RPPR=311.359;RPR=16;RUN=1;SAF=16;SAP=37.7539;SAR=0;SRF=142;SRP=311.359;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:82:72,10:72:2851:10:401:-11.7645,0,-231.57 0/1:20:17,3:17:672:3:122:-5.35189,0,-54.7862 0/0:56:53,3:53:2130:3:119:0,-5.76318,-180.752 dDocent_Contig_6130 144 . C T 530.852 . AB=0.456522;ABP=3.76559;AC=1;AF=0.166667;AN=6;AO=22;CIGAR=1X;DP=94;DPB=94;DPRA=1.24074;EPP=50.7827;EPPR=159.356;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=794;QR=2554;RO=72;RPL=0;RPP=50.7827;RPPR=159.356;RPR=22;RUN=1;SAF=0;SAP=50.7827;SAR=22;SRF=0;SRP=159.356;SRR=72;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:46:25,21:25:906:21:757:-54.6081,0,-68.0119 0/0:21:20,1:20:667:1:37:0,-2.6238,-56.6359 0/0:27:27,0:27:981:0:0:0,-8.12781,-88.6062 dDocent_Contig_6132 107 . N A 1562.71 . AB=0;ABP=0;AC=6;AF=1;AN=6;AO=74;CIGAR=1X;DP=74;DPB=74;DPRA=0;EPP=163.699;EPPR=0;GTI=0;LEN=1;MEANALT=1;MQM=26.4054;MQMR=0;NS=3;NUMALT=1;ODDS=0;PAIRED=0.378378;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=2415;QR=0;RO=0;RPL=0;RPP=163.699;RPPR=0;RPR=74;RUN=1;SAF=0;SAP=163.699;SAR=74;SRF=0;SRP=0;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 1/1:29:0,29:0:0:29:942:-53.9002,-8.72987,0 1/1:29:0,29:0:0:29:977:-63.4493,-8.72987,0 1/1:16:0,16:0:0:16:496:-38.32,-4.81648,0 dDocent_Contig_6134 82 . G A 2438.91 . AB=0.294118;ABP=153.225;AC=3;AF=0.5;AN=6;AO=120;CIGAR=1X;DP=408;DPB=408;DPRA=0;EPP=263.587;EPPR=628.394;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=4126;QR=10021;RO=288;RPL=120;RPP=263.587;RPPR=628.394;RPR=0;RUN=1;SAF=120;SAP=263.587;SAR=0;SRF=288;SRP=628.394;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:248:169,79:169:5873:79:2721:-170.489,0,-454.036 0/1:51:37,14:37:1262:14:480:-28.1743,0,-98.5206 0/1:109:82,27:82:2886:27:925:-50.7503,0,-227.168 dDocent_Contig_6135 61 . A G 427.332 . AB=0.238095;ABP=53.0576;AC=2;AF=0.333333;AN=6;AO=22;CIGAR=1X;DP=116;DPB=116;DPRA=0;EPP=50.7827;EPPR=207.129;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=0;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=863;QR=3773;RO=94;RPL=22;RPP=50.7827;RPPR=207.129;RPR=0;RUN=1;SAF=22;SAP=50.7827;SAR=0;SRF=94;SRP=207.129;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:55:42,13:42:1683:13:507:-29.4153,0,-135.139 0/0:32:30,2:30:1199:2:76:0,-2.4187,-100.973 0/1:29:22,7:22:891:7:280:-16.8408,0,-71.7658 dDocent_Contig_6136 18 . T C 11782.5 . AB=0.468856;ABP=10.4494;AC=3;AF=0.5;AN=6;AO=414;CIGAR=1X;DP=883;DPB=883;DPRA=0;EPP=902;EPPR=1012.74;GTI=0;LEN=1;MEANALT=1.33333;MQM=59.9855;MQMR=60;NS=3;NUMALT=1;ODDS=5.55112e-17;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=16100;QR=18000;RO=465;RPL=0;RPP=902;RPPR=1012.74;RPR=414;RUN=1;SAF=414;SAP=902;SAR=0;SRF=465;SRP=1012.74;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:356:173,183:173:6727:183:7118:-533.216,0,-498.067 0/1:180:97,83:97:3736:83:3225:-236.179,0,-282.125 0/1:347:195,148:195:7537:148:5757:-414.381,0,-574.445 dDocent_Contig_6137 15 . C A 257.997 . AB=0.133758;ABP=185.926;AC=2;AF=0.333333;AN=6;AO=23;CIGAR=1X;DP=283;DPB=283;DPRA=0;EPP=52.9542;EPPR=567.593;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=1.38778e-17;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=924;QR=10415;RO=260;RPL=0;RPP=52.9542;RPPR=567.593;RPR=23;RUN=1;SAF=23;SAP=52.9542;SAR=0;SRF=260;SRP=567.593;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:126:124,2:124:5011:2:81:0,-30.244,-443.158 0/1:65:53,12:53:2062:12:476:-23.622,0,-166.189 0/1:92:83,9:83:3342:9:367:-5.7005,0,-273.121 dDocent_Contig_6138 12 . C A 1456.07 . AB=0.217252;ABP=220.359;AC=3;AF=0.5;AN=6;AO=68;CIGAR=1X;DP=313;DPB=313;DPRA=0;EPP=150.67;EPPR=535.021;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=2716;QR=9771;RO=245;RPL=0;RPP=150.67;RPPR=535.021;RPR=68;RUN=1;SAF=68;SAP=150.67;SAR=0;SRF=245;SRP=535.021;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:171:133,38:133:5291:38:1527:-86.1909,0,-424.558 0/1:51:45,6:45:1797:6:240:-6.62262,0,-146.595 0/1:91:67,24:67:2683:24:949:-58.3167,0,-214.193 dDocent_Contig_6139 30 . G A 1482.54 . AB=0.404412;ABP=13.8038;AC=3;AF=0.5;AN=6;AO=55;CIGAR=2X2M1X;DP=136;DPB=136;DPRA=0;EPP=122.441;EPPR=174.557;GTI=0;LEN=1;MEANALT=1.66667;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=6.93889e-18;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=2150;QR=3064;RO=79;RPL=0;RPP=122.441;RPPR=174.557;RPR=55;RUN=1;SAF=55;SAP=122.441;SAR=0;SRF=79;SRP=174.557;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|1:71:45,24:45:1760:24:943:-64.037,0,-137.497 0|1:31:17,14:17:649:14:551:-40.6034,0,-49.4049 0|1:34:17,17:17:655:17:656:-49.137,0,-49.0471 dDocent_Contig_6140 10 . T A 958.99 . AB=0.306452;ABP=43.3577;AC=3;AF=0.5;AN=6;AO=38;CIGAR=1X;DP=124;DPB=124;DPRA=0;EPP=85.5263;EPPR=189.757;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=0.736842;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=1530;QR=3456;RO=86;RPL=0;RPP=85.5263;RPPR=189.757;RPR=38;RUN=1;SAF=38;SAP=85.5263;SAR=0;SRF=86;SRP=189.757;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:66:47,19:47:1902:19:758:-48.674,0,-151.508 0/1:16:13,3:13:516:3:123:-6.64831,0,-41.9681 0/1:42:26,16:26:1038:16:649:-46.0996,0,-81.0705 dDocent_Contig_6141 10 . T G 362.139 . AB=0.0386905;ABP=624.077;AC=1;AF=0.166667;AN=6;AO=13;CIGAR=2X6M;DP=336;DPB=336.25;DPRA=0;EPP=31.2394;EPPR=589.308;GTI=0;LEN=1;MEANALT=4;MQM=36;MQMR=60;NS=3;NUMALT=3;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=468;QR=10591;RO=270;RPL=0;RPP=31.2394;RPPR=589.308;RPR=13;RUN=1;SAF=13;SAP=31.2394;SAR=0;SRF=270;SRP=589.308;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|0:205:173,2,3,20:173:6806:2,3,20:57,108,798:-13.6652,-61.6515,-620.909,-57.7444,-613.508,-616.703,0,-555.796,-551.891,-553.874 0|1:32:23,0,5,4:23:896:0,5,4:0,180,154:-6.38638,-13.3101,-86.9758,0,-73.6445,-72.1393,-0.644166,-74.3335,-61.0036,-73.1293 0|0:99:74,5,5,13:74:2889:5,5,13:194,180,532:-21.6535,-28.2231,-264.206,-30.6031,-252.374,-266.576,0,-221.804,-224.174,-233.598 dDocent_Contig_6143 14 . T A 307.427 . AB=0.162963;ABP=136.21;AC=2;AF=0.333333;AN=6;AO=23;CIGAR=1X;DP=156;DPB=156;DPRA=0;EPP=52.9542;EPPR=291.816;GTI=0;LEN=1;MEANALT=1;MQM=41.6957;MQMR=55.188;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=0.93985;PAO=0;PQA=0;PQR=0;PRO=0;QA=914;QR=5302;RO=133;RPL=0;RPP=52.9542;RPPR=291.816;RPR=23;RUN=1;SAF=23;SAP=52.9542;SAR=0;SRF=133;SRP=291.816;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:85:70,15:70:2786:15:594:-25.0409,0,-215.687 0/0:21:20,1:20:786:1:38:0,-2.73405,-65.073 0/1:50:43,7:43:1730:7:282:-9.22474,0,-131.179 dDocent_Contig_6144 8 . G A 130.859 . AB=0.341463;ABP=11.961;AC=1;AF=0.166667;AN=6;AO=23;CIGAR=1X1M;DP=128;DPB=128;DPRA=2.7;EPP=52.9542;EPPR=220.158;GTI=0;LEN=1;MEANALT=1.5;MQM=22.5217;MQMR=57.65;NS=3;NUMALT=2;ODDS=0;PAIRED=0.826087;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=508;QR=3758;RO=100;RPL=0;RPP=52.9542;RPPR=220.158;RPR=23;RUN=1;SAF=23;SAP=52.9542;SAR=0;SRF=100;SRP=220.158;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|0:67:53,5,9:53:2002:5,9:194,167:0,-3.75904,-159.116,-5.89102,-150.494,-159.924 0|0:20:20,0,0:20:718:0,0:0,0:0,-6.0206,-64.936,-6.0206,-64.936,-64.936 0|1:41:27,0,14:27:1038:0,14:0,341:-14.9098,-23.0376,-108.367,0,-85.6019,-81.3874 dDocent_Contig_6145 42 . T C 3014.39 . AB=0.574713;ABP=11.4466;AC=3;AF=0.5;AN=6;AO=100;CIGAR=1X;DP=174;DPB=174;DPRA=0;EPP=220.158;EPPR=163.699;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=3984;QR=2928;RO=74;RPL=0;RPP=220.158;RPPR=163.699;RPR=100;RUN=1;SAF=100;SAP=220.158;SAR=0;SRF=74;SRP=163.699;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:86:28,58:28:1111:58:2327:-183.697,0,-74.3882 0/1:46:24,22:24:955:22:860:-63.862,0,-72.4069 0/1:42:22,20:22:862:20:797:-59.4027,0,-65.2481 dDocent_Contig_6146 26 . A C 222.966 . AB=0.151163;ABP=93.9091;AC=2;AF=0.333333;AN=6;AO=13;CIGAR=1X2M1X16M;DP=122;DPB=122.75;DPRA=0;EPP=31.2394;EPPR=187.585;GTI=0;LEN=1;MEANALT=4;MQM=60;MQMR=60;NS=3;NUMALT=4;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=505;QR=3353;RO=85;RPL=0;RPP=31.2394;RPPR=187.585;RPR=13;RUN=1;SAF=13;SAP=31.2394;SAR=0;SRF=85;SRP=187.585;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|0:36:28,0,4,2,0:28:1110:0,4,2,0:0,146,77,0:-3.48189,-11.9107,-103.294,0,-91.3727,-90.1686,-5.58654,-96.9721,-85.0514,-96.37,-11.9107,-103.294,-91.3727,-96.9721,-103.294 0|1:36:21,6,5,4,0:21:821:6,5,4,0:236,199,157,0:-13.0906,0,-65.6886,-3.02478,-51.1079,-69.0163,-6.50086,-54.5826,-57.6091,-72.7918,-19.4123,-67.4948,-70.5214,-73.9959,-86.9081 0|1:50:36,7,2,1,3:36:1422:7,2,1,3:269,71,41,122:-11.2421,0,-114.914,-16.3017,-111.241,-132.718,-18.6933,-113.637,-129.936,-135.416,-12.0104,-106.957,-123.256,-125.653,-128.134 dDocent_Contig_6147 71 . T C 146.174 . AB=0.21875;ABP=24.9965;AC=2;AF=0.333333;AN=6;AO=7;CIGAR=1X;DP=38;DPB=38;DPRA=2.66667;EPP=18.2106;EPPR=70.3259;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=282;QR=1099;RO=31;RPL=7;RPP=18.2106;RPPR=70.3259;RPR=0;RUN=1;SAF=7;SAP=18.2106;SAR=0;SRF=31;SRP=70.3259;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:20:14,6:14:492:6:242:-16.1367,0,-38.5876 0/1:12:11,1:11:391:1:40:-0.383319,0,-31.9144 0/0:6:6,0:6:216:0:0:0,-1.80618,-19.7883 dDocent_Contig_6148 41 . T A 80.1539 . AB=0.2;ABP=26.4622;AC=1;AF=0.166667;AN=6;AO=6;CIGAR=1X;DP=95;DPB=95;DPRA=0.923077;EPP=16.0391;EPPR=196.271;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=206;QR=3449;RO=89;RPL=0;RPP=16.0391;RPPR=196.271;RPR=6;RUN=1;SAF=6;SAP=16.0391;SAR=0;SRF=89;SRP=196.271;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:42:42,0:42:1649:0:0:0,-12.6433,-148.652 0/0:23:23,0:23:868:0:0:0,-6.92369,-78.4296 0/1:30:24,6:24:932:6:206:-9.8393,0,-75.1532 dDocent_Contig_6149 40 . G A 114.694 . AB=0.134328;ABP=80.8268;AC=2;AF=0.333333;AN=6;AO=9;CIGAR=1X;DP=106;DPB=106;DPRA=0.858974;EPP=22.5536;EPPR=213.643;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=3.46945e-18;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=366;QR=3864;RO=97;RPL=0;RPP=22.5536;RPPR=213.643;RPR=9;RUN=1;SAF=9;SAP=22.5536;SAR=0;SRF=97;SRP=213.643;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:39:39,0:39:1561:0:0:0,-11.7402,-140.727 0/1:25:23,2:23:903:2:82:-0.253928,0,-74.0527 0/1:42:35,7:35:1400:7:284:-13.2907,0,-113.613 dDocent_Contig_6150 167 . C G 337.587 . AB=0.371429;ABP=8.03571;AC=2;AF=0.333333;AN=6;AO=15;CIGAR=1X;DP=63;DPB=63;DPRA=0;EPP=35.5824;EPPR=107.241;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=605;QR=1905;RO=48;RPL=15;RPP=35.5824;RPPR=107.241;RPR=0;RUN=1;SAF=0;SAP=35.5824;SAR=15;SRF=0;SRP=107.241;SRR=48;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:28:26,2:26:1048:2:82:0,-0.649162,-86.8314 0/1:20:13,7:13:522:7:277:-19.2766,0,-41.306 0/1:15:9,6:9:335:6:246:-18.0047,0,-25.9682 dDocent_Contig_6151 17 . A G 1498.41 . AB=0.253968;ABP=135.505;AC=3;AF=0.5;AN=6;AO=64;CIGAR=1X;DP=252;DPB=252;DPRA=0;EPP=141.985;EPPR=411.247;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=1.38778e-17;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=2559;QR=7552;RO=188;RPL=0;RPP=141.985;RPPR=411.247;RPR=64;RUN=1;SAF=64;SAP=141.985;SAR=0;SRF=188;SRP=411.247;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:142:107,35:107:4266:35:1418:-85.1227,0,-341.151 0/1:30:17,13:17:685:13:515:-37.6599,0,-52.9457 0/1:80:64,16:64:2601:16:626:-32.5816,0,-210.121 dDocent_Contig_6152 58 . A C 88.4202 . AB=0.170732;ABP=41.6201;AC=2;AF=0.333333;AN=6;AO=8;CIGAR=1X;DP=58;DPB=58;DPRA=0;EPP=20.3821;EPPR=111.584;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=292;QR=1939;RO=50;RPL=8;RPP=20.3821;RPPR=111.584;RPR=0;RUN=1;SAF=8;SAP=20.3821;SAR=0;SRF=50;SRP=111.584;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:15:11,4:11:401:4:161:-10.3594,0,-31.8974 0/1:26:23,3:23:909:3:90:-0.567844,0,-74.289 0/0:17:16,1:16:629:1:41:0,-1.02294,-52.8478 dDocent_Contig_6153 15 . A T 450.867 . AB=0.25641;ABP=43.2104;AC=2;AF=0.333333;AN=6;AO=21;CIGAR=1X3M1X;DP=99;DPB=99;DPRA=0;EPP=48.6112;EPPR=172.385;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=832;QR=3053;RO=78;RPL=0;RPP=48.6112;RPPR=172.385;RPR=21;RUN=1;SAF=21;SAP=48.6112;SAR=0;SRF=78;SRP=172.385;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|1:50:37,13:37:1437:13:513:-31.4663,0,-114.529 0|0:21:20,1:20:788:1:39:0,-2.42507,-67.3472 0|1:28:21,7:21:828:7:280:-17.1433,0,-66.4047 dDocent_Contig_6154 7 . A G 210.565 . AB=0.315789;ABP=14.2105;AC=1;AF=0.166667;AN=6;AO=17;CIGAR=1X;DP=152;DPB=152;DPRA=0;EPP=39.9253;EPPR=293.988;GTI=0;LEN=1;MEANALT=1.33333;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=522;QR=5140;RO=134;RPL=0;RPP=39.9253;RPPR=293.988;RPR=17;RUN=1;SAF=17;SAP=39.9253;SAR=0;SRF=134;SRP=293.988;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:94:89,4:89:3409:4:127:0,-16.6293,-295.193 0/0:20:19,1:19:732:1:17:0,-4.32062,-64.5103 0/1:38:26,12:26:999:12:378:-22.8805,0,-78.7802 dDocent_Contig_6156 7 . A T 131.655 . AB=0.259259;ABP=16.6021;AC=1;AF=0.166667;AN=6;AO=7;CIGAR=1X;DP=95;DPB=95;DPRA=0.794118;EPP=5.80219;EPPR=191.928;GTI=0;LEN=1;MEANALT=1;MQM=59.2857;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=0.285714;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=253;QR=3347;RO=87;RPL=0;RPP=18.2106;RPPR=191.928;RPR=7;RUN=1;SAF=2;SAP=5.80219;SAR=5;SRF=87;SRP=191.928;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:30:29,0:29:1110:0:0:0,-8.72987,-100.094 0/1:27:20,7:20:771:7:253:-14.9895,0,-61.5904 0/0:38:38,0:38:1466:0:0:0,-11.4391,-132.217 dDocent_Contig_6158 10 . T C 11006.5 . AB=0.275029;ABP=767.054;AC=3;AF=0.5;AN=6;AO=478;CIGAR=1X;DP=1738;DPB=1738;DPRA=0;EPP=1040.97;EPPR=2734.72;GTI=0;LEN=1;MEANALT=1.66667;MQM=56.7238;MQMR=57.6749;NS=3;NUMALT=1;ODDS=1.11022e-16;PAIRED=1;PAIREDR=0.999205;PAO=0;PQA=0;PQR=0;PRO=0;QA=18973;QR=50039;RO=1258;RPL=0;RPP=1040.97;RPPR=2734.72;RPR=478;RUN=1;SAF=478;SAP=1040.97;SAR=0;SRF=1258;SRP=2734.72;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:655:494,160:494:19707:160:6384:-346.143,0,-1542.8 0/1:509:360,149:360:14207:149:5875:-350.692,0,-1096.43 0/1:574:404,169:404:16125:169:6714:-409.335,0,-1241.42 dDocent_Contig_6159 107 . N T 885.153 . AB=0;ABP=0;AC=6;AF=1;AN=6;AO=28;CIGAR=1X;DP=28;DPB=28;DPRA=0;EPP=63.8115;EPPR=0;GTI=0;LEN=1;MEANALT=1;MQM=59.8571;MQMR=0;NS=3;NUMALT=1;ODDS=0;PAIRED=0.928571;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=967;QR=0;RO=0;RPL=0;RPP=63.8115;RPPR=0;RPR=28;RUN=1;SAF=0;SAP=63.8115;SAR=28;SRF=0;SRP=0;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 1/1:18:0,18:0:0:18:617:-55.8506,-5.41854,0 1/1:3:0,3:0:0:3:105:-9.79616,-0.90309,0 1/1:7:0,7:0:0:7:245:-22.3912,-2.10721,0 dDocent_Contig_6160 8 . A G 299.211 . AB=0.0952381;ABP=32.8939;AC=0;AF=0;AN=6;AO=2;CIGAR=1X1M1X;DP=149;DPB=149;DPRA=0.33871;EPP=7.35324;EPPR=287.473;GTI=0;LEN=1;MEANALT=2;MQM=60;MQMR=60;NS=3;NUMALT=2;ODDS=6.93889e-18;PAIRED=0;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=76;QR=5018;RO=131;RPL=0;RPP=7.35324;RPPR=287.473;RPR=2;RUN=1;SAF=2;SAP=7.35324;SAR=0;SRF=131;SRP=287.473;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|0:66:54,0,12:54:2075:0,12:0,488:-24.4033,-40.6589,-210.982,0,-170.725,-167.113 0|0:21:15,2,4:15:563:2,4:76,164:-9.0407,-7.33316,-52.8211,0,-39.8796,-44.9089 0|0:62:62,0,0:62:2380:0,0:0,0:0,-18.6639,-214.407,-18.6639,-214.407,-214.407 dDocent_Contig_6162 45 . A G 294.562 . AB=0.230769;ABP=43.9342;AC=2;AF=0.333333;AN=6;AO=15;CIGAR=1X;DP=94;DPB=94;DPRA=1.12069;EPP=35.5824;EPPR=174.557;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=576;QR=3109;RO=79;RPL=0;RPP=35.5824;RPPR=174.557;RPR=15;RUN=1;SAF=15;SAP=35.5824;SAR=0;SRF=79;SRP=174.557;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:42:34,8:34:1319:8:321:-16.6149,0,-106.338 0/0:29:29,0:29:1155:0:0:0,-8.72987,-104.235 0/1:23:16,7:16:635:7:255:-16.3643,0,-50.5627 dDocent_Contig_6163 17 . C A 392.171 . AB=0.129278;ABP=316.966;AC=3;AF=0.5;AN=6;AO=34;CIGAR=1X;DP=263;DPB=263;DPRA=0;EPP=76.8404;EPPR=500.277;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=1365;QR=9146;RO=229;RPL=0;RPP=76.8404;RPPR=500.277;RPR=34;RUN=1;SAF=34;SAP=76.8404;SAR=0;SRF=229;SRP=500.277;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:121:107,14:107:4262:14:559:-14.2273,0,-347.11 0/1:31:24,7:24:961:7:281:-16.3297,0,-77.4608 0/1:111:98,13:98:3923:13:525:-14.1831,0,-319.642 dDocent_Contig_6164 9 . A C 144.248 . AB=0.195652;ABP=40.0197;AC=2;AF=0.333333;AN=6;AO=11;CIGAR=1X;DP=74;DPB=74;DPRA=0;EPP=26.8965;EPPR=139.813;GTI=0;LEN=1;MEANALT=1;MQM=59.8182;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=423;QR=2379;RO=63;RPL=0;RPP=26.8965;RPPR=139.813;RPR=11;RUN=1;SAF=11;SAP=26.8965;SAR=0;SRF=63;SRP=139.813;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:22:16,6:16:622:6:230:-14.4429,0,-49.6975 0/1:24:21,3:21:769:3:115:-3.50017,0,-62.3065 0/0:28:26,2:26:988:2:78:0,-1.02621,-81.8275 dDocent_Contig_6165 10 . T C 138.453 . AB=0.135417;ABP=113.846;AC=3;AF=0.5;AN=6;AO=13;CIGAR=1X;DP=96;DPB=96;DPRA=0;EPP=31.2394;EPPR=183.243;GTI=0;LEN=1;MEANALT=1;MQM=56.6923;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=524;QR=3245;RO=83;RPL=0;RPP=31.2394;RPPR=183.243;RPR=13;RUN=1;SAF=13;SAP=31.2394;SAR=0;SRF=83;SRP=183.243;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:26:21,5:21:839:5:201:-10.5993,0,-67.9963 0/1:17:14,3:14:515:3:122:-6.21369,0,-41.5575 0/1:53:48,5:48:1891:5:201:-2.51292,0,-154.436 dDocent_Contig_6166 21 . G A 627.081 . AB=0.138365;ABP=364.24;AC=2;AF=0.333333;AN=6;AO=46;CIGAR=1X1M1X2M1X;DP=405;DPB=405;DPRA=0;EPP=102.898;EPPR=752.168;GTI=0;LEN=1;MEANALT=3;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=1837;QR=13518;RO=345;RPL=0;RPP=102.898;RPPR=752.168;RPR=46;RUN=1;SAF=46;SAP=102.898;SAR=0;SRF=345;SRP=752.168;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|1:141:107,25:107:4218:25:994:-49.6279,0,-339.491 0|0:87:84,2:84:3270:2:79:0,-18.7955,-286.906 0|1:177:154,19:154:6030:19:764:-16.603,0,-490.06 dDocent_Contig_6167 27 . A G 4122.12 . AB=0.757225;ABP=102.434;AC=3;AF=0.5;AN=6;AO=131;CIGAR=1X;DP=173;DPB=173;DPRA=0;EPP=287.473;EPPR=94.2121;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=5213;QR=1670;RO=42;RPL=0;RPP=287.473;RPPR=94.2121;RPR=131;RUN=1;SAF=131;SAP=287.473;SAR=0;SRF=42;SRP=94.2121;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:85:18,67:18:713:67:2644:-212.495,0,-38.9062 0/1:25:11,14:11:436:14:549:-42.2197,0,-32.0692 0/1:63:13,50:13:521:50:2020:-163.02,0,-28.272 dDocent_Contig_6168 33 . A G 1349.11 . AB=0.28866;ABP=78.2731;AC=3;AF=0.5;AN=6;AO=56;CIGAR=1X;DP=194;DPB=194;DPRA=0;EPP=124.613;EPPR=302.673;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=1.38778e-17;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=2199;QR=5502;RO=138;RPL=0;RPP=124.613;RPPR=302.673;RPR=56;RUN=1;SAF=56;SAP=124.613;SAR=0;SRF=138;SRP=302.673;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:95:64,31:64:2558:31:1243:-83.5438,0,-201.762 0/1:53:34,19:34:1361:19:744:-51.3281,0,-106.792 0/1:46:40,6:40:1583:6:212:-5.56207,0,-128.864 dDocent_Contig_6169 8 . A G 409.332 . AB=0.223684;ABP=53.4113;AC=2;AF=0.333333;AN=6;AO=17;CIGAR=1X3M1X;DP=76;DPB=76;DPRA=0;EPP=39.9253;EPPR=100.727;GTI=0;LEN=1;MEANALT=2;MQM=60;MQMR=60;NS=3;NUMALT=2;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=657;QR=1745;RO=45;RPL=0;RPP=39.9253;RPPR=100.727;RPR=17;RUN=1;SAF=17;SAP=39.9253;SAR=0;SRF=45;SRP=100.727;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|1:38:18,12,8:18:708:12,8:461,315:-32.4195,0,-54.6269,-11.9203,-32.3252,-67.7571 0|1:17:12,3,2:12:447:3,2:117,78:-6.00511,0,-35.6676,-3.20571,-30.1564,-39.1753 0|0:21:15,2,4:15:590:2,4:79,153:-8.0314,-6.04175,-53.9822,0,-42.0314,-47.3284 dDocent_Contig_6170 10 . T C 524.806 . AB=0.164021;ABP=188.321;AC=2;AF=0.333333;AN=6;AO=45;CIGAR=1X;DP=450;DPB=450;DPRA=0;EPP=100.727;EPPR=882.457;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=1812;QR=16120;RO=405;RPL=0;RPP=100.727;RPPR=882.457;RPR=45;RUN=1;SAF=45;SAP=100.727;SAR=0;SRF=405;SRP=882.457;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:261:247,14:247:9834:14:565:0,-27.3769,-833.245 0/1:63:49,14:49:1925:14:555:-31.325,0,-154.488 0/1:126:109,17:109:4361:17:692:-24.6784,0,-354.505 dDocent_Contig_6171 34 . G T 240.234 . AB=0.2;ABP=49.9141;AC=1;AF=0.166667;AN=6;AO=21;CIGAR=1X;DP=242;DPB=242;DPRA=0;EPP=48.6112;EPPR=482.906;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=6.93889e-18;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=838;QR=8799;RO=221;RPL=0;RPP=48.6112;RPPR=482.906;RPR=21;RUN=1;SAF=21;SAP=48.6112;SAR=0;SRF=221;SRP=482.906;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:104:98,6:98:3906:6:239:0,-9.42323,-329.651 0/1:60:48,12:48:1896:12:484:-25.8473,0,-152.782 0/0:78:75,3:75:2997:3:115:0,-12.7566,-259.094 dDocent_Contig_6172 19 . G T 54.3211 . AB=0.127273;ABP=69.3784;AC=2;AF=0.333333;AN=6;AO=7;CIGAR=1X;DP=62;DPB=62;DPRA=3.92857;EPP=18.2106;EPPR=122.441;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=275;QR=2208;RO=55;RPL=0;RPP=18.2106;RPPR=122.441;RPR=7;RUN=1;SAF=7;SAP=18.2106;SAR=0;SRF=55;SRP=122.441;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:45:40,5:40:1616:5:196:-4.46707,0,-132.122 0/0:7:7,0:7:275:0:0:0,-2.10721,-25.1185 0/1:10:8,2:8:317:2:79:-4.48694,0,-25.8818 dDocent_Contig_6174 160 . G A 261.165 . AB=0.161972;ABP=143.942;AC=2;AF=0.333333;AN=6;AO=23;CIGAR=1X;DP=172;DPB=172;DPRA=2.36667;EPP=52.9542;EPPR=326.56;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=797;QR=5728;RO=149;RPL=23;RPP=52.9542;RPPR=326.56;RPR=0;RUN=1;SAF=0;SAP=52.9542;SAR=23;SRF=0;SRP=326.56;SRR=149;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:102:86,16:86:3322:16:557:-19.7482,0,-268.39 0/0:30:30,0:30:1158:0:0:0,-9.0309,-104.513 0/1:40:33,7:33:1248:7:240:-9.89108,0,-100.561 dDocent_Contig_6175 14 . G T 219.043 . AB=0.196429;ABP=47.8357;AC=1;AF=0.166667;AN=6;AO=21;CIGAR=1X;DP=244;DPB=244;DPRA=0;EPP=48.6112;EPPR=487.249;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=0.96861;PAO=0;PQA=0;PQR=0;PRO=0;QA=852;QR=8913;RO=223;RPL=0;RPP=48.6112;RPPR=487.249;RPR=21;RUN=1;SAF=21;SAP=48.6112;SAR=0;SRF=223;SRP=487.249;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:149:141,8:141:5630:8:325:0,-15.2338,-476.887 0/0:39:37,2:37:1450:2:80:0,-4.14859,-123.161 0/1:56:45,11:45:1833:11:447:-23.7282,0,-148.309 dDocent_Contig_6176 21 . A G 1784.25 . AB=0.364641;ABP=31.8153;AC=3;AF=0.5;AN=6;AO=66;CIGAR=1X;DP=181;DPB=181;DPRA=0;EPP=146.327;EPPR=252.73;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=0.984848;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=2639;QR=4560;RO=115;RPL=0;RPP=146.327;RPPR=252.73;RPR=66;RUN=1;SAF=66;SAP=146.327;SAR=0;SRF=115;SRP=252.73;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:127:77,50:77:3041:50:2002:-142.141,0,-235.543 0/1:23:13,10:13:513:10:397:-29.1636,0,-39.5934 0/1:31:25,6:25:1006:6:240:-12.6435,0,-81.5043 dDocent_Contig_6177 33 . C A 75.5344 . AB=0.127273;ABP=69.3784;AC=1;AF=0.166667;AN=6;AO=7;CIGAR=1X;DP=144;DPB=144;DPRA=1.23596;EPP=18.2106;EPPR=300.502;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=3.46945e-18;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=284;QR=5412;RO=137;RPL=0;RPP=18.2106;RPPR=300.502;RPR=7;RUN=1;SAF=7;SAP=18.2106;SAR=0;SRF=137;SRP=300.502;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:57:57,0:57:2286:0:0:0,-17.1587,-205.904 0/0:32:32,0:32:1263:0:0:0,-9.63296,-113.945 0/1:55:48,7:48:1863:7:284:-9.37734,0,-151.319 dDocent_Contig_6178 30 . T G 1796.36 . AB=0.512605;ABP=3.17453;AC=3;AF=0.5;AN=6;AO=61;CIGAR=1X;DP=119;DPB=119;DPRA=0;EPP=135.47;EPPR=128.956;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=6.93889e-18;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=2445;QR=2236;RO=58;RPL=0;RPP=135.47;RPPR=128.956;RPR=61;RUN=1;SAF=61;SAP=135.47;SAR=0;SRF=58;SRP=128.956;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:75:36,39:36:1400:39:1579:-119.764,0,-103.696 0/1:20:8,12:8:309:12:464:-36.0807,0,-22.1513 0/1:24:14,10:14:527:10:402:-29.3143,0,-40.5434 dDocent_Contig_6179 10 . T G 1701.44 . AB=0.182178;ABP=446.081;AC=3;AF=0.5;AN=6;AO=92;CIGAR=1X;DP=505;DPB=505;DPRA=0;EPP=202.786;EPPR=897.657;GTI=0;LEN=1;MEANALT=1.33333;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=2.77556e-17;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=3633;QR=16465;RO=412;RPL=0;RPP=202.786;RPPR=897.657;RPR=92;RUN=1;SAF=92;SAP=202.786;SAR=0;SRF=412;SRP=897.657;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:276:224,51:224:8951:51:2038:-100.43,0,-721.876 0/1:97:79,18:79:3124:18:688:-33.0451,0,-252.051 0/1:132:109,23:109:4390:23:907:-42.1918,0,-355.286 dDocent_Contig_6181 12 . A G 438.594 . AB=0.130282;ABP=340.2;AC=3;AF=0.5;AN=6;AO=37;CIGAR=1X;DP=284;DPB=284;DPRA=0;EPP=83.3548;EPPR=521.992;GTI=0;LEN=1;MEANALT=1.66667;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=2.77556e-17;PAIRED=0.918919;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=1469;QR=9523;RO=239;RPL=0;RPP=83.3548;RPPR=521.992;RPR=37;RUN=1;SAF=37;SAP=83.3548;SAR=0;SRF=239;SRP=521.992;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:124:101,19:101:4018:19:748:-31.1196,0,-325.083 0/1:45:40,5:40:1604:5:201:-4.92417,0,-131.046 0/1:115:98,13:98:3901:13:520:-13.3383,0,-317.277 dDocent_Contig_6182 26 . G A 55.781 . AB=0.106383;ABP=129.51;AC=2;AF=0.333333;AN=6;AO=10;CIGAR=1X;DP=113;DPB=113;DPRA=2.47368;EPP=24.725;EPPR=226.672;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=407;QR=4127;RO=103;RPL=0;RPP=24.725;RPPR=226.672;RPR=10;RUN=1;SAF=10;SAP=24.725;SAR=0;SRF=103;SRP=226.672;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:61:55,6:55:2218:6:245:-4.06664,0,-181.423 0/0:19:19,0:19:769:0:0:0,-5.71957,-69.5302 0/1:33:29,4:29:1140:4:162:-5.03297,0,-92.9437 dDocent_Contig_6183 11 . G C 4621.54 . AB=0.417949;ABP=25.8163;AC=3;AF=0.5;AN=6;AO=163;CIGAR=1X;DP=390;DPB=390;DPRA=0;EPP=356.96;EPPR=495.935;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=0.991189;PAO=0;PQA=0;PQR=0;PRO=0;QA=6495;QR=8904;RO=227;RPL=0;RPP=356.96;RPPR=495.935;RPR=163;RUN=1;SAF=163;SAP=356.96;SAR=0;SRF=227;SRP=495.935;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:238:131,107:131:5137:107:4281:-313.599,0,-390.584 0/1:48:22,26:22:846:26:1030:-78.5458,0,-62.0048 0/1:104:74,30:74:2921:30:1184:-75.532,0,-231.688 dDocent_Contig_6185 19 . G A 1211.12 . AB=0.386555;ABP=16.3128;AC=3;AF=0.5;AN=6;AO=46;CIGAR=1X2M1X3M1X;DP=119;DPB=119;DPRA=0;EPP=102.898;EPPR=159.356;GTI=0;LEN=1;MEANALT=1.33333;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=1795;QR=2805;RO=72;RPL=0;RPP=102.898;RPPR=159.356;RPR=46;RUN=1;SAF=46;SAP=102.898;SAR=0;SRF=72;SRP=159.356;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|1:50:27,22:27:1053:22:847:-61.3922,0,-79.9183 0|1:23:20,3:20:775:3:114:-3.70823,0,-63.1471 0|1:46:25,21:25:977:21:834:-61.5314,0,-74.3794 dDocent_Contig_6186 161 . A G 60.3145 . AB=0.0961538;ABP=223.999;AC=2;AF=0.333333;AN=6;AO=22;CIGAR=1X;DP=257;DPB=257;DPRA=0;EPP=50.7827;EPPR=496.082;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=885;QR=9136;RO=235;RPL=22;RPP=50.7827;RPPR=496.082;RPR=0;RUN=1;SAF=0;SAP=50.7827;SAR=22;SRF=0;SRP=513.306;SRR=235;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:101:94,7:94:3676:7:279:0,-4.92379,-305.385 0/1:61:56,5:56:2175:5:205:-0.47218,0,-177.571 0/1:95:85,10:85:3285:10:401:-7.85109,0,-267.114 dDocent_Contig_6187 8 . A G 148.214 . AB=0.190476;ABP=37.9607;AC=1;AF=0.166667;AN=6;AO=8;CIGAR=1X3M1X1M1X;DP=78;DPB=78;DPRA=2.33333;EPP=20.3821;EPPR=155.013;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=318;QR=2746;RO=70;RPL=0;RPP=20.3821;RPPR=155.013;RPR=8;RUN=1;SAF=8;SAP=20.3821;SAR=0;SRF=70;SRP=155.013;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|1:42:34,8:34:1342:8:318:-16.3443,0,-108.412 0|0:14:14,0:14:540:0:0:0,-4.21442,-48.9436 0|0:22:22,0:22:864:0:0:0,-6.62266,-78.0776 dDocent_Contig_6188 20 . G T 903.375 . AB=0.138829;ABP=525.337;AC=2;AF=0.333333;AN=6;AO=76;CIGAR=1X;DP=683;DPB=683;DPRA=0;EPP=168.042;EPPR=1321.09;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=0.855263;PAIREDR=0.825371;PAO=0;PQA=0;PQR=0;PRO=0;QA=3068;QR=24289;RO=607;RPL=0;RPP=168.042;RPPR=1321.09;RPR=76;RUN=1;SAF=76;SAP=168.042;SAR=0;SRF=607;SRP=1321.09;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:338:287,51:287:11439:51:2055:-83.3803,0,-926.966 0/1:123:110,13:110:4364:13:524:-10.4801,0,-355.691 0/0:222:210,12:210:8486:12:489:0,-22.4673,-718.848 dDocent_Contig_6189 18 . T C 84.9856 . AB=0.129032;ABP=77.1206;AC=1;AF=0.166667;AN=6;AO=16;CIGAR=1X;DP=316;DPB=316;DPRA=0;EPP=7.89611;EPPR=654.452;GTI=0;LEN=1;MEANALT=1;MQM=48.75;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=0.6875;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=625;QR=11577;RO=300;RPL=0;RPP=37.7539;RPPR=654.452;RPR=16;RUN=1;SAF=11;SAP=7.89611;SAR=5;SRF=300;SRP=654.452;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:167:161,6:161:6255:6:225:0,-35.7063,-548.186 0/0:87:85,2:85:3238:2:82:0,-18.4099,-283.735 0/1:62:54,8:54:2084:8:318:-10.3225,0,-169.11 dDocent_Contig_6190 22 . G A 2340.19 . AB=0.584615;ABP=11.0949;AC=2;AF=0.333333;AN=6;AO=76;CIGAR=1X;DP=141;DPB=141;DPRA=5.90909;EPP=168.042;EPPR=144.156;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=6.93889e-18;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=3069;QR=2572;RO=65;RPL=0;RPP=168.042;RPPR=144.156;RPR=76;RUN=1;SAF=76;SAP=168.042;SAR=0;SRF=65;SRP=144.156;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:85:40,45:40:1615:45:1833:-139.58,0,-119.989 0/0:11:11,0:11:438:0:0:0,-3.31133,-39.7713 0/1:45:14,31:14:519:31:1236:-97.9613,0,-33.4856 dDocent_Contig_6193 7 . A T 3263.15 . AB=0.46748;ABP=5.27004;AC=3;AF=0.5;AN=6;AO=115;CIGAR=1M1X1M1X2M;DP=246;DPB=240.167;DPRA=0;EPP=252.73;EPPR=211.472;GTI=0;LEN=1;MEANALT=1.66667;MQM=60;MQMR=60;NS=3;NUMALT=2;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=4392;QR=3689;RO=96;RPL=0;RPP=252.73;RPPR=211.472;RPR=115;RUN=1;SAF=115;SAP=252.73;SAR=0;SRF=96;SRP=211.472;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|1:159:55,78,26:55:2120:78,26:2983,997:-228.224,0,-150.609,-162.949,-92.2583,-329.211 0|1:22:18,4,0:18:687:4,0:150,0:-7.24327,0,-55.54,-12.6618,-56.7441,-69.0299 0|1:65:23,33,9:23:882:33,9:1259,338:-96.3708,0,-62.4647,-75.6068,-44.712,-145.291 dDocent_Contig_6194 15 . G A 307.119 . AB=0.136364;ABP=230.423;AC=3;AF=0.5;AN=6;AO=27;CIGAR=1X;DP=198;DPB=198;DPRA=0;EPP=61.6401;EPPR=374.332;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=1053;QR=6745;RO=171;RPL=0;RPP=61.6401;RPPR=374.332;RPR=27;RUN=1;SAF=27;SAP=61.6401;SAR=0;SRF=171;SRP=374.332;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:70:62,8:62:2448:8:309:-7.09758,0,-199.396 0/1:69:57,12:57:2231:12:469:-21.7827,0,-180.19 0/1:59:52,7:52:2066:7:275:-7.3545,0,-168.361 dDocent_Contig_6195 11 . C T 80.2533 . AB=0.235294;ABP=13.3567;AC=1;AF=0.166667;AN=6;AO=4;CIGAR=1X;DP=42;DPB=42;DPRA=1.36;EPP=11.6962;EPPR=85.5263;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=162;QR=1519;RO=38;RPL=0;RPP=11.6962;RPPR=85.5263;RPR=4;RUN=1;SAF=4;SAP=11.6962;SAR=0;SRF=38;SRP=85.5263;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:16:16,0:16:641:0:0:0,-4.81648,-58.0242 0/0:9:9,0:9:363:0:0:0,-2.70927,-33.0343 0/1:17:13,4:13:515:4:162:-9.84924,0,-41.5763 dDocent_Contig_6196 14 . A G 94.1542 . AB=0.175;ABP=39.7082;AC=2;AF=0.333333;AN=6;AO=9;CIGAR=1X;DP=73;DPB=73;DPRA=0;EPP=22.5536;EPPR=141.985;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=3.46945e-18;PAIRED=0.777778;PAIREDR=0.984375;PAO=0;PQA=0;PQR=0;PRO=0;QA=335;QR=2443;RO=64;RPL=0;RPP=22.5536;RPPR=141.985;RPR=9;RUN=1;SAF=9;SAP=22.5536;SAR=0;SRF=64;SRP=141.985;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:33:31,2:31:1193:2:70:0,-3.28687,-101.008 0/1:18:16,2:16:597:2:71:-1.32304,0,-48.6372 0/1:22:17,5:17:653:5:194:-11.2099,0,-52.4794 dDocent_Contig_6198 61 . T C 1892.2 . AB=0.418994;ABP=13.2126;AC=3;AF=0.5;AN=6;AO=75;CIGAR=1X;DP=179;DPB=179;DPRA=0;EPP=165.871;EPPR=228.843;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=2752;QR=3863;RO=104;RPL=75;RPP=165.871;RPPR=228.843;RPR=0;RUN=1;SAF=75;SAP=165.871;SAR=0;SRF=104;SRP=228.843;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:77:52,25:52:1944:25:927:-60.5547,0,-152.026 0/1:38:29,9:29:1081:9:337:-19.244,0,-86.1506 0/1:64:23,41:23:838:41:1488:-114.944,0,-56.4778 dDocent_Contig_6199 10 . T C 4517.38 . AB=0.760638;ABP=113.94;AC=3;AF=0.5;AN=6;AO=143;CIGAR=1X;DP=188;DPB=188;DPRA=0;EPP=313.531;EPPR=100.727;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=5703;QR=1802;RO=45;RPL=0;RPP=313.531;RPPR=100.727;RPR=143;RUN=1;SAF=143;SAP=313.531;SAR=0;SRF=45;SRP=100.727;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:85:27,58:27:1081:58:2326:-183.904,0,-71.988 0/1:49:11,38:11:434:38:1521:-122.374,0,-24.662 0/1:54:7,47:7:287:47:1856:-150.982,0,-9.94961 dDocent_Contig_6200 30 . C T 334.062 . AB=0.185567;ABP=86.3098;AC=2;AF=0.333333;AN=6;AO=18;CIGAR=1X;DP=106;DPB=106;DPRA=5.38889;EPP=42.0968;EPPR=194.1;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=726;QR=3471;RO=88;RPL=0;RPP=42.0968;RPPR=194.1;RPR=18;RUN=1;SAF=18;SAP=42.0968;SAR=0;SRF=88;SRP=194.1;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:65:59,6:59:2315:6:239:-2.31549,0,-188.935 0/0:9:9,0:9:350:0:0:0,-2.70927,-31.8568 0/1:32:20,12:20:806:12:487:-34.5487,0,-63.2246 dDocent_Contig_6201 10 . T A 1268.68 . AB=0.345324;ABP=31.8956;AC=2;AF=0.333333;AN=6;AO=49;CIGAR=1X;DP=167;DPB=167;DPRA=0;EPP=109.412;EPPR=259.244;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=0.938776;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=1948;QR=4713;RO=118;RPL=0;RPP=109.412;RPPR=259.244;RPR=49;RUN=1;SAF=49;SAP=109.412;SAR=0;SRF=118;SRP=259.244;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:92:61,31:61:2435:31:1241:-84.2669,0,-191.605 0/0:28:27,1:27:1066:1:41:0,-4.33427,-92.1334 0/1:47:30,17:30:1212:17:666:-46.1237,0,-95.2023 dDocent_Contig_6202 51 . C T 331.537 . AB=0.25;ABP=35.5824;AC=2;AF=0.333333;AN=6;AO=15;CIGAR=1X;DP=79;DPB=79;DPRA=1.57895;EPP=35.5824;EPPR=25.9465;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=600;QR=2478;RO=64;RPL=0;RPP=35.5824;RPPR=25.9465;RPR=15;RUN=1;SAF=15;SAP=35.5824;SAR=0;SRF=64;SRP=141.985;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:35:27,8:27:1060:8:318:-18.4498,0,-85.1525 0/0:19:19,0:19:750:0:0:0,-5.71957,-67.823 0/1:25:18,7:18:668:7:282:-18.2268,0,-52.8947 dDocent_Contig_6203 131 . G A 3032.98 . AB=0.688623;ABP=54.6185;AC=3;AF=0.5;AN=6;AO=115;CIGAR=1X;DP=167;DPB=167;DPRA=0;EPP=252.73;EPPR=115.927;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=3980;QR=1699;RO=52;RPL=0;RPP=252.73;RPPR=115.927;RPR=115;RUN=1;SAF=0;SAP=252.73;SAR=115;SRF=0;SRP=115.927;SRR=52;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:85:33,52:33:1057:52:1781:-134.981,0,-69.8305 0/1:21:9,12:9:308:12:412:-31.0883,0,-21.731 0/1:61:10,51:10:334:51:1787:-142.752,0,-12.0221 dDocent_Contig_6204 13 . T A 211.375 . AB=0.333333;ABP=10.2485;AC=3;AF=0.5;AN=6;AO=10;CIGAR=1X;DP=30;DPB=30;DPRA=0;EPP=24.725;EPPR=46.4397;GTI=0;LEN=1;MEANALT=1;MQM=57.4;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=0.8;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=386;QR=789;RO=20;RPL=0;RPP=24.725;RPPR=46.4397;RPR=10;RUN=1;SAF=10;SAP=24.725;SAR=0;SRF=20;SRP=46.4397;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:9:6,3:6:243:3:123:-8.66976,0,-19.5389 0/1:12:9,3:9:342:3:112:-6.74679,0,-27.5125 0/1:9:5,4:5:204:4:151:-11.2439,0,-16.0348 dDocent_Contig_6205 21 . A C 67.3273 . AB=0.147059;ABP=39.7976;AC=1;AF=0.166667;AN=6;AO=5;CIGAR=1X;DP=59;DPB=59;DPRA=2.72;EPP=13.8677;EPPR=118.098;GTI=0;LEN=1;MEANALT=2;MQM=55;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=0;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=202;QR=2136;RO=53;RPL=0;RPP=13.8677;RPPR=118.098;RPR=5;RUN=1;SAF=5;SAP=13.8677;SAR=0;SRF=53;SRP=118.098;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:34:28,5:28:1131:5:202:-8.2556,0,-91.8223 0/0:7:7,0:7:278:0:0:0,-2.10721,-25.3884 0/0:18:18,0:18:727:0:0:0,-5.41854,-65.7556 dDocent_Contig_6206 11 . C A 63.5668 . AB=0.190476;ABP=20.4855;AC=2;AF=0.333333;AN=6;AO=4;CIGAR=1X;DP=31;DPB=31;DPRA=1.05;EPP=11.6962;EPPR=61.6401;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=163;QR=1064;RO=27;RPL=0;RPP=11.6962;RPPR=61.6401;RPR=4;RUN=1;SAF=4;SAP=11.6962;SAR=0;SRF=27;SRP=61.6401;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:12:9,3:9:343:3:123:-7.85243,0,-27.6062 0/1:9:8,1:8:320:1:40:-1.28641,0,-26.4584 0/0:10:10,0:10:401:0:0:0,-3.0103,-36.4499 dDocent_Contig_6207 47 . A G 65.4529 . AB=0.190476;ABP=20.4855;AC=1;AF=0.166667;AN=6;AO=6;CIGAR=1X;DP=188;DPB=188;DPRA=0.736842;EPP=16.0391;EPPR=398.218;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=238;QR=7258;RO=182;RPL=0;RPP=16.0391;RPPR=398.218;RPR=6;RUN=1;SAF=6;SAP=16.0391;SAR=0;SRF=182;SRP=398.218;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:91:89,2:89:3543:2:79:0,-19.8961,-311.412 0/1:21:17,4:17:689:4:159:-8.3692,0,-56.0176 0/0:76:76,0:76:3026:0:0:0,-22.8783,-272.427 dDocent_Contig_6208 8 . A G 456.816 . AB=0.328358;ABP=20.1552;AC=3;AF=0.5;AN=6;AO=22;CIGAR=1X;DP=67;DPB=67;DPRA=0;EPP=50.7827;EPPR=100.727;GTI=0;LEN=1;MEANALT=1;MQM=40;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=828;QR=1646;RO=45;RPL=0;RPP=50.7827;RPPR=100.727;RPR=22;RUN=1;SAF=22;SAP=50.7827;SAR=0;SRF=45;SRP=100.727;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:28:20,8:20:731:8:301:-17.4233,0,-57.6868 0/1:23:16,7:16:577:7:256:-15.3695,0,-45.3357 0/1:16:9,7:9:338:7:271:-18.4117,0,-25.958 dDocent_Contig_6209 107 . N C 190.586 . AB=0;ABP=0;AC=4;AF=1;AN=4;AO=6;CIGAR=1X;DP=6;DPB=6;DPRA=0;EPP=16.0391;EPPR=0;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=0;NS=2;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=201;QR=0;RO=0;RPL=0;RPP=16.0391;RPPR=0;RPR=6;RUN=1;SAF=0;SAP=16.0391;SAR=6;SRF=0;SRP=0;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 1/1:4:0,4:0:0:4:133:-12.299,-1.20412,0 1/1:2:0,2:0:0:2:68:-6.45793,-0.60206,0 ./.:.:.:.:.:.:.:. dDocent_Contig_6210 30 . T C 64894 . AB=0.735209;ABP=1335.05;AC=3;AF=0.5;AN=6;AO=2038;CIGAR=1X;DP=2772;DPB=2772;DPRA=0;EPP=4428.47;EPPR=1559.96;GTI=0;LEN=1;MEANALT=2.66667;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=0.983808;PAIREDR=0.995816;PAO=0;PQA=0;PQR=0;PRO=0;QA=81477;QR=28718;RO=717;RPL=0;RPP=4428.47;RPPR=1559.96;RPR=2038;RUN=1;SAF=2038;SAP=4428.47;SAR=0;SRF=717;SRP=1559.96;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:1393:331,1050:331:13219:1050:42003:-3360.08,0,-772.611 0/1:388:122,264:122:4883:264:10521:-829.582,0,-322.757 0/1:991:264,724:264:10616:724:28953:-2305.26,0,-656.878 dDocent_Contig_6211 87 . A G 270.989 . AB=0.288889;ABP=20.4303;AC=2;AF=0.333333;AN=6;AO=14;CIGAR=1X;DP=77;DPB=77;DPRA=0;EPP=5.49198;EPPR=10.7656;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=3.46945e-18;PAIRED=0.714286;PAIREDR=0.571429;PAO=0;PQA=0;PQR=0;PRO=0;QA=517;QR=2189;RO=63;RPL=14;RPP=33.4109;RPPR=139.813;RPR=0;RUN=1;SAF=9;SAP=5.49198;SAR=5;SRF=39;SRP=10.7656;SRR=24;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:32:31,1:31:1040:1:35:0,-6.13433,-90.3943 0/1:30:19,11:19:687:11:412:-28.3943,0,-53.1252 0/1:15:13,2:13:462:2:70:-2.13195,0,-37.399 dDocent_Contig_6213 14 . C T 239.402 . AB=0.222222;ABP=15.074;AC=0;AF=0;AN=6;AO=4;CIGAR=1X2M1X;DP=47;DPB=47;DPRA=1.2;EPP=11.6962;EPPR=74.6689;GTI=0;LEN=1;MEANALT=2;MQM=60;MQMR=60;NS=3;NUMALT=2;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=163;QR=1316;RO=33;RPL=0;RPP=11.6962;RPPR=74.6689;RPR=4;RUN=1;SAF=4;SAP=11.6962;SAR=0;SRF=33;SRP=74.6689;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|0:15:15,0,0:15:599:0,0:0,0:0,-4.51545,-54.2486,-4.51545,-54.2486,-54.2486 0|0:14:10,0,4:10:400:0,4:0,153:-9.92552,-12.9358,-45.8974,0,-33.3487,-32.1446 0|0:18:8,4,6:8:317:4,6:163,242:-17.5376,-6.49683,-31.379,0,-12.6319,-24.2767 dDocent_Contig_6214 9 . A T 249.118 . AB=0.229508;ABP=41.7764;AC=3;AF=0.5;AN=6;AO=14;CIGAR=2X2M1X;DP=61;DPB=61;DPRA=0;EPP=33.4109;EPPR=105.07;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=530;QR=1831;RO=47;RPL=0;RPP=33.4109;RPPR=105.07;RPR=14;RUN=1;SAF=14;SAP=33.4109;SAR=0;SRF=47;SRP=105.07;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|1:36:27,9:27:1053:9:343:-20.3891,0,-84.2351 0|1:12:10,2:10:387:2:78:-3.79094,0,-31.5738 0|1:13:10,3:10:391:3:109:-6.2523,0,-31.6341 dDocent_Contig_6215 20 . A G 454.573 . AB=0.060241;ABP=142.429;AC=0;AF=0;AN=6;AO=5;CIGAR=1X2M1X4M1X;DP=177;DPB=177;DPRA=4.36842;EPP=13.8677;EPPR=296.159;GTI=0;LEN=1;MEANALT=4;MQM=54;MQMR=60;NS=3;NUMALT=2;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=175;QR=5349;RO=135;RPL=0;RPP=13.8677;RPPR=296.159;RPR=5;RUN=1;SAF=5;SAP=13.8677;SAR=0;SRF=135;SRP=296.159;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|0:83:58,5,18:58:2296:5,18:175,727:-25.9793,-29.4715,-216.994,0,-175.038,-183.577 0|0:19:19,0,0:19:747:0,0:0,0:0,-5.71957,-67.5581,-5.71957,-67.5581,-67.5581 0|0:75:58,0,17:58:2306:0,17:0,683:-23.0009,-40.4607,-230.398,0,-190.256,-185.139 dDocent_Contig_6216 8 . A G 47.7811 . AB=0.118644;ABP=77.5396;AC=1;AF=0.166667;AN=6;AO=16;CIGAR=1X;DP=188;DPB=188;DPRA=0;EPP=37.7539;EPPR=376.504;GTI=0;LEN=1;MEANALT=1;MQM=57.8125;MQMR=60;NS=3;NUMALT=1;ODDS=6.93889e-18;PAIRED=0;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=612;QR=6566;RO=172;RPL=0;RPP=37.7539;RPPR=376.504;RPR=16;RUN=1;SAF=16;SAP=37.7539;SAR=0;SRF=172;SRP=376.504;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:74:69,5:69:2648:5:193:0,-4.54729,-220.779 0/1:59:52,7:52:1978:7:267:-6.60201,0,-160.496 0/0:55:51,4:51:1940:4:152:0,-2.51995,-160.803 dDocent_Contig_6217 89 . G A 565.101 . AB=0.45283;ABP=4.03458;AC=2;AF=0.333333;AN=6;AO=24;CIGAR=1X;DP=66;DPB=66;DPRA=2.03846;EPP=55.1256;EPPR=85.7331;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=59.7857;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=0.97619;PAO=0;PQA=0;PQR=0;PRO=0;QA=837;QR=1474;RO=42;RPL=24;RPP=55.1256;RPPR=94.2121;RPR=0;RUN=1;SAF=24;SAP=55.1256;SAR=0;SRF=41;SRP=85.7331;SRR=1;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:33:20,13:20:709:13:477:-33.3389,0,-54.1993 0/0:13:13,0:13:457:0:0:0,-3.91339,-41.4635 0/1:20:9,11:9:308:11:360:-26.6941,0,-22.0087 dDocent_Contig_6218 19 . A C 46.1014 . AB=0.0567376;ABP=243.643;AC=1;AF=0.166667;AN=6;AO=10;CIGAR=6M1X4M;DP=215;DPB=213.273;DPRA=0;EPP=24.725;EPPR=300.86;GTI=0;LEN=1;MEANALT=3.33333;MQM=60;MQMR=60;NS=3;NUMALT=2;ODDS=0;PAIRED=1;PAIREDR=0.884615;PAO=0;PQA=0;PQR=0;PRO=0;QA=386;QR=7213;RO=182;RPL=0;RPP=24.725;RPPR=398.218;RPR=10;RUN=1;SAF=10;SAP=24.725;SAR=0;SRF=170;SRP=300.86;SRR=12;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|0:98:84,9,3:84:3342:9,3:333,108:-1.94561,0,-272.498,-18.4271,-266.401,-292.723 0|1:43:33,5,5:33:1302:5,5:193,197:-6.27625,-0.364491,-105.99,0,-91.289,-105.632 0|0:74:65,5,2:65:2569:5,2:204,81:0,-2.73115,-212.623,-12.8876,-207.448,-223.679 dDocent_Contig_6219 13 . C T 626.637 . AB=0.239316;ABP=72.0705;AC=3;AF=0.5;AN=6;AO=28;CIGAR=1X;DP=117;DPB=117;DPRA=0;EPP=63.8115;EPPR=196.271;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=6.93889e-18;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=1137;QR=3567;RO=89;RPL=0;RPP=63.8115;RPPR=196.271;RPR=28;RUN=1;SAF=28;SAP=63.8115;SAR=0;SRF=89;SRP=196.271;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:67:48,19:48:1923:19:776:-49.989,0,-153.096 0/1:12:8,4:8:323:4:156:-10.8018,0,-25.8262 0/1:38:33,5:33:1321:5:205:-7.39587,0,-107.714 dDocent_Contig_6220 32 . C T 122.791 . AB=0.179487;ABP=37.8095;AC=1;AF=0.166667;AN=6;AO=11;CIGAR=1X;DP=115;DPB=115;DPRA=0;EPP=26.8965;EPPR=228.843;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=439;QR=4110;RO=104;RPL=0;RPP=26.8965;RPPR=228.843;RPR=11;RUN=1;SAF=11;SAP=26.8965;SAR=0;SRF=104;SRP=228.843;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:59:56,3:56:2237:3:115:0,-7.03667,-190.772 0/0:17:16,1:16:632:1:41:0,-1.02294,-53.1183 0/1:39:32,7:32:1241:7:283:-14.1028,0,-100.213 dDocent_Contig_6221 145 . A T 293.553 . AB=0.155556;ABP=142.129;AC=2;AF=0.333333;AN=6;AO=22;CIGAR=1X;DP=216;DPB=216;DPRA=0;EPP=50.7827;EPPR=424.276;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=848;QR=7011;RO=194;RPL=0;RPP=50.7827;RPPR=424.276;RPR=22;RUN=1;SAF=0;SAP=50.7827;SAR=22;SRF=0;SRP=424.276;SRR=194;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:81:80,1:80:2952:1:39:0,-20.4869,-261.987 0/1:44:37,7:37:1288:7:267:-11.1469,0,-102.962 0/1:91:77,14:77:2771:14:542:-21.7313,0,-222.222 dDocent_Contig_6222 10 . T A 252.308 . AB=0.113281;ABP=335.551;AC=2;AF=0.333333;AN=6;AO=31;CIGAR=2M1X4M2X;DP=313;DPB=314.333;DPRA=0;EPP=70.3259;EPPR=597.994;GTI=0;LEN=1;MEANALT=2;MQM=60;MQMR=60;NS=3;NUMALT=2;ODDS=0;PAIRED=1;PAIREDR=0.99635;PAO=0;PQA=0;PQR=0;PRO=0;QA=1228;QR=10637;RO=274;RPL=0;RPP=70.3259;RPPR=597.994;RPR=31;RUN=1;SAF=31;SAP=70.3259;SAR=0;SRF=274;SRP=597.994;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|1:214:192,20,0:192:7438:20,0:790,0:-7.22019,0,-604.993,-65.0179,-611.014,-676.019 0|1:42:27,9,6:27:1055:9,6:360,233:-21.5335,0,-84.0258,-10.52,-67.5896,-95.4401 0|0:57:55,2,0:55:2144:2,0:78,0:0,-9.75524,-185.764,-16.5566,-186.366,-192.778 dDocent_Contig_6223 20 . A G 184.319 . AB=0.186441;ABP=53.3958;AC=2;AF=0.333333;AN=6;AO=19;CIGAR=1X;DP=178;DPB=178;DPRA=0;EPP=44.2683;EPPR=348.274;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=760;QR=6328;RO=159;RPL=0;RPP=44.2683;RPPR=348.274;RPR=19;RUN=1;SAF=19;SAP=44.2683;SAR=0;SRF=159;SRP=348.274;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:119:111,8:111:4400:8:327:0,-6.02246,-366.151 0/1:24:21,3:21:845:3:117:-3.68511,0,-69.1375 0/1:35:27,8:27:1083:8:316:-18.2667,0,-87.22 dDocent_Contig_6224 94 . C G 1153.33 . AB=0.569767;ABP=6.64625;AC=3;AF=0.5;AN=6;AO=49;CIGAR=2X;DP=86;DPB=87.5;DPRA=0;EPP=109.412;EPPR=81.1833;GTI=0;LEN=1;MEANALT=1.33333;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=3;PQA=93;PQR=0;PRO=0;QA=1624;QR=1232;RO=36;RPL=49;RPP=109.412;RPPR=81.1833;RPR=0;RUN=1;SAF=49;SAP=109.412;SAR=0;SRF=36;SRP=81.1833;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|1:40:17,23:17:573:23:762:-56.8487,0,-39.8492 0|1:12:7,5:7:244:5:168:-11.5189,0,-18.3662 0|1:34:12,21:12:415:21:694:-52.4886,0,-27.3985 dDocent_Contig_6226 42 . A G 578.062 . AB=0.466667;ABP=3.44459;AC=2;AF=0.333333;AN=6;AO=21;CIGAR=1X;DP=53;DPB=53;DPRA=2.8125;EPP=48.6112;EPPR=72.4974;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=3.46945e-18;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=824;QR=1287;RO=32;RPL=0;RPP=48.6112;RPPR=72.4974;RPR=21;RUN=1;SAF=21;SAP=48.6112;SAR=0;SRF=32;SRP=72.4974;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:32:16,16:16:646:16:620:-46.4984,0,-48.8415 0/0:8:8,0:8:322:0:0:0,-2.40824,-29.3483 0/1:13:8,5:8:319:5:204:-14.8306,0,-25.1637 dDocent_Contig_6227 14 . G T 48.7509 . AB=0.10119;ABP=235.099;AC=1;AF=0.166667;AN=6;AO=28;CIGAR=1X;DP=418;DPB=418;DPRA=0;EPP=63.8115;EPPR=836.856;GTI=0;LEN=1;MEANALT=1.33333;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=1.38778e-17;PAIRED=1;PAIREDR=0.994792;PAO=0;PQA=0;PQR=0;PRO=0;QA=1015;QR=15118;RO=384;RPL=0;RPP=63.8115;RPPR=836.856;RPR=28;RUN=1;SAF=28;SAP=63.8115;SAR=0;SRF=384;SRP=836.856;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:204:196,8:196:7687:8:287:0,-35.2349,-665.287 0/0:46:43,3:43:1698:3:111:0,-3.49389,-142.692 0/1:168:145,17:145:5733:17:617:-6.69899,0,-466.607 dDocent_Contig_6228 18 . G A 75.3753 . AB=0.126984;ABP=79.1497;AC=2;AF=0.333333;AN=6;AO=8;CIGAR=1X;DP=96;DPB=96;DPRA=0.954545;EPP=20.3821;EPPR=194.1;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=325;QR=3463;RO=88;RPL=0;RPP=20.3821;RPPR=194.1;RPR=8;RUN=1;SAF=8;SAP=20.3821;SAR=0;SRF=88;SRP=194.1;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:33:33,0:33:1302:0:0:0,-9.93399,-117.444 0/1:30:26,4:26:1001:4:162:-5.93585,0,-81.3576 0/1:33:29,4:29:1160:4:163:-5.12444,0,-94.7438 dDocent_Contig_6229 29 . T A 2318.04 . AB=0.566434;ABP=8.49213;AC=3;AF=0.5;AN=6;AO=81;CIGAR=1X;DP=143;DPB=143;DPRA=0;EPP=178.9;EPPR=126.927;GTI=0;LEN=1;MEANALT=1.33333;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=0.983607;PAO=0;PQA=0;PQR=0;PRO=0;QA=3107;QR=2451;RO=61;RPL=0;RPP=178.9;RPPR=135.47;RPR=81;RUN=1;SAF=81;SAP=178.9;SAR=0;SRF=60;SRP=126.927;SRR=1;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:57:22,34:22:886:34:1313:-101.166,0,-62.7802 0/1:26:14,12:14:561:12:454:-33.3717,0,-43.0041 0/1:60:25,35:25:1004:35:1340:-102.789,0,-72.592 dDocent_Contig_6230 14 . G A 36.6077 . AB=0.285714;ABP=5.80219;AC=1;AF=0.166667;AN=6;AO=2;CIGAR=1X3M1X;DP=35;DPB=35;DPRA=0.5;EPP=7.35324;EPPR=72.4974;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=1.73472e-18;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=80;QR=1279;RO=32;RPL=0;RPP=7.35324;RPPR=72.4974;RPR=2;RUN=1;SAF=2;SAP=7.35324;SAR=0;SRF=32;SRP=72.4974;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|0:17:17,0:17:673:0:0:0,-5.11751,-60.9037 0|1:7:5,2:5:203:2:80:-5.48458,0,-16.5458 0|0:11:10,0:10:403:0:0:0,-3.0103,-36.3121 dDocent_Contig_6231 15 . G A 2563.64 . AB=0.594406;ABP=14.0803;AC=3;AF=0.5;AN=6;AO=85;CIGAR=1X;DP=143;DPB=143;DPRA=0;EPP=187.585;EPPR=124.613;GTI=0;LEN=1;MEANALT=1.66667;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=3381;QR=2214;RO=56;RPL=0;RPP=187.585;RPPR=124.613;RPR=85;RUN=1;SAF=85;SAP=187.585;SAR=0;SRF=56;SRP=124.613;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:50:16,33:16:631:33:1294:-101.576,0,-41.9717 0/1:37:14,23:14:562:23:923:-72.2353,0,-39.7833 0/1:56:26,29:26:1021:29:1164:-88.0754,0,-75.2151 dDocent_Contig_6232 15 . C T 64.7505 . AB=0.142857;ABP=41.7866;AC=1;AF=0.166667;AN=6;AO=5;CIGAR=1X;DP=96;DPB=96;DPRA=1.14754;EPP=13.8677;EPPR=200.614;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=205;QR=3686;RO=91;RPL=0;RPP=13.8677;RPPR=200.614;RPR=5;RUN=1;SAF=5;SAP=13.8677;SAR=0;SRF=91;SRP=200.614;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:43:43,0:43:1754:0:0:0,-12.9443,-158.066 0/0:18:18,0:18:714:0:0:0,-5.41854,-64.5792 0/1:35:30,5:30:1218:5:205:-8.29896,0,-99.354 dDocent_Contig_6233 16 . G C 764.952 . AB=0.225806;ABP=104.229;AC=3;AF=0.5;AN=6;AO=35;CIGAR=1X;DP=155;DPB=155;DPRA=0;EPP=79.0118;EPPR=263.587;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=1418;QR=4824;RO=120;RPL=0;RPP=79.0118;RPPR=263.587;RPR=35;RUN=1;SAF=35;SAP=79.0118;SAR=0;SRF=120;SRP=263.587;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:81:62,19:62:2492:19:770:-45.2356,0,-200.027 0/1:45:34,11:34:1358:11:445:-26.8594,0,-108.933 0/1:29:24,5:24:974:5:203:-9.92319,0,-79.2279 dDocent_Contig_6234 34 . C G 200.891 . AB=0.32;ABP=10.0459;AC=1;AF=0.166667;AN=6;AO=12;CIGAR=1X;DP=101;DPB=101;DPRA=2.86667;EPP=29.068;EPPR=196.271;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=3.46945e-18;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=485;QR=3516;RO=89;RPL=0;RPP=29.068;RPPR=196.271;RPR=12;RUN=1;SAF=12;SAP=29.068;SAR=0;SRF=89;SRP=196.271;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:15:15,0:15:598:0:0:0,-4.51545,-54.1594 0/1:25:17,8:17:667:8:323:-21.913,0,-52.8349 0/0:61:57,4:57:2251:4:162:0,-3.39587,-187.796 dDocent_Contig_6236 45 . T C 597.576 . AB=0.235294;ABP=75.4353;AC=3;AF=0.5;AN=6;AO=28;CIGAR=1X;DP=119;DPB=119;DPRA=0;EPP=63.8115;EPPR=200.614;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=0.989011;PAO=0;PQA=0;PQR=0;PRO=0;QA=1110;QR=3598;RO=91;RPL=0;RPP=63.8115;RPPR=200.614;RPR=28;RUN=1;SAF=28;SAP=63.8115;SAR=0;SRF=91;SRP=200.614;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:58:40,18:40:1560:18:723:-47.9355,0,-123.186 0/1:18:16,2:16:635:2:78:-1.98493,0,-52.0666 0/1:43:35,8:35:1403:8:309:-15.2237,0,-113.582 dDocent_Contig_6237 8 . A G 2331.15 . AB=0.293769;ABP=127.506;AC=3;AF=0.5;AN=6;AO=99;CIGAR=1X;DP=337;DPB=337;DPRA=0;EPP=217.986;EPPR=517.649;GTI=0;LEN=1;MEANALT=1.33333;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=3770;QR=9062;RO=237;RPL=0;RPP=217.986;RPPR=517.649;RPR=99;RUN=1;SAF=99;SAP=217.986;SAR=0;SRF=237;SRP=517.649;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:171:113,57:113:4347:57:2175:-144.413,0,-339.731 0/1:74:50,24:50:1910:24:917:-60.5707,0,-149.871 0/1:92:74,18:74:2805:18:678:-33.6547,0,-224.938 dDocent_Contig_6238 9 . A G 810.961 . AB=0.172161;ABP=257.868;AC=2;AF=0.333333;AN=6;AO=53;CIGAR=1X;DP=390;DPB=390;DPRA=0;EPP=118.098;EPPR=734.797;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=59.9733;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=0.673591;PAO=0;PQA=0;PQR=0;PRO=0;QA=2056;QR=12956;RO=337;RPL=0;RPP=118.098;RPPR=734.797;RPR=53;RUN=1;SAF=53;SAP=118.098;SAR=0;SRF=337;SRP=734.797;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:226:183,43:183:7015:43:1671:-82.6163,0,-563.186 0/1:47:43,4:43:1648:4:156:-0.268879,0,-134.416 0/0:117:111,6:111:4293:6:229:0,-14.2452,-365.453 dDocent_Contig_6239 98 . N C 90.8826 . AB=0;ABP=0;AC=2;AF=1;AN=2;AO=4;CIGAR=3X;DP=4;DPB=4.66667;DPRA=0;EPP=11.6962;EPPR=0;GTI=0;LEN=1;MEANALT=1;MQM=25;MQMR=0;NS=1;NUMALT=1;ODDS=7.37776;PAIRED=1;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=139;QR=0;RO=0;RPL=4;RPP=11.6962;RPPR=0;RPR=0;RUN=1;SAF=4;SAP=11.6962;SAR=0;SRF=0;SRP=0;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 1|1:4:0,4:0:0:4:139:-9.08799,-1.20412,0 .:.:.:.:.:.:.:. .:.:.:.:.:.:.:. dDocent_Contig_6240 25 . A G 1015.36 . AB=0.285714;ABP=61.6401;AC=3;AF=0.5;AN=6;AO=42;CIGAR=1X;DP=147;DPB=147;DPRA=0;EPP=94.2121;EPPR=231.015;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=1670;QR=4209;RO=105;RPL=0;RPP=94.2121;RPPR=231.015;RPR=42;RUN=1;SAF=42;SAP=94.2121;SAR=0;SRF=105;SRP=231.015;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:76:52,24:52:2094:24:963:-64.0898,0,-165.759 0/1:40:33,7:33:1322:7:272:-12.8035,0,-107.197 0/1:31:20,11:20:793:11:435:-30.166,0,-62.3521 dDocent_Contig_6241 138 . G A 56.8211 . AB=0.266667;ABP=10.1038;AC=1;AF=0.166667;AN=6;AO=4;CIGAR=1X;DP=57;DPB=57;DPRA=0.714286;EPP=11.6962;EPPR=118.098;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=130;QR=1800;RO=53;RPL=0;RPP=11.6962;RPPR=118.098;RPR=4;RUN=1;SAF=0;SAP=11.6962;SAR=4;SRF=0;SRP=118.098;SRR=53;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:32:32,0:32:1080:0:0:0,-9.63296,-97.504 0/0:10:10,0:10:348:0:0:0,-3.0103,-31.656 0/1:15:11,4:11:372:4:130:-7.50601,0,-29.291 dDocent_Contig_6242 16 . T C 1340 . AB=0.414634;ABP=10.7958;AC=3;AF=0.5;AN=6;AO=51;CIGAR=1X;DP=123;DPB=123;DPRA=0;EPP=113.755;EPPR=159.356;GTI=0;LEN=1;MEANALT=1;MQM=55.3137;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=0.803922;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=2040;QR=2897;RO=72;RPL=0;RPP=113.755;RPPR=159.356;RPR=51;RUN=1;SAF=51;SAP=113.755;SAR=0;SRF=72;SRP=159.356;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:54:33,21:33:1330:21:845:-58.231,0,-103.702 0/1:30:17,13:17:680:13:516:-35.9553,0,-52.5006 0/1:39:22,17:22:887:17:679:-45.3362,0,-68.3966 dDocent_Contig_6243 120 . C A 1203.43 . AB=0.222812;ABP=254.607;AC=3;AF=0.5;AN=6;AO=84;CIGAR=1X;DP=377;DPB=377;DPRA=0;EPP=185.414;EPPR=637.08;GTI=0;LEN=1;MEANALT=1.33333;MQM=40;MQMR=42.7295;NS=3;NUMALT=1;ODDS=2.77556e-17;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=2728;QR=9599;RO=292;RPL=0;RPP=185.414;RPPR=637.08;RPR=84;RUN=1;SAF=0;SAP=185.414;SAR=84;SRF=0;SRP=637.08;SRR=292;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:175:133,41:133:4377:41:1368:-67.1694,0,-333.549 0/1:84:56,28:56:1814:28:848:-49.1987,0,-134.868 0/1:118:103,15:103:3408:15:512:-9.49806,0,-265.382 dDocent_Contig_6244 109 . T G 69.6442 . AB=0.375;ABP=4.09604;AC=2;AF=0.333334;AN=6;AO=4;CIGAR=1X2M1X3M;DP=58;DPB=58;DPRA=0;EPP=11.6962;EPPR=115.927;GTI=0;LEN=1;MEANALT=1;MQM=48;MQMR=60;NS=3;NUMALT=2;ODDS=0;PAIRED=0;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=135;QR=1728;RO=52;RPL=0;RPP=11.6962;RPPR=115.927;RPR=4;RUN=1;SAF=4;SAP=11.6962;SAR=0;SRF=0;SRP=115.927;SRR=52;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|0:41:40,0,1:40:1319:0,1:0,34:0,-12.0412,-118.663,-8.95918,-115.919,-115.618 0|1:9:7,2,0:7:240:2,0:71,0:-3.50865,0,-19.2259,-5.61586,-19.828,-25.1131 0|1:8:5,0,3:5:169:0,3:0,101:-6.97418,-8.47933,-22.1811,0,-14.0379,-13.1348 dDocent_Contig_6245 7 . A G 518.465 . AB=0.246835;ABP=90.9687;AC=3;AF=0.5;AN=6;AO=39;CIGAR=1X;DP=158;DPB=158;DPRA=0;EPP=87.6977;EPPR=257.073;GTI=0;LEN=1;MEANALT=1.33333;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=1152;QR=4476;RO=117;RPL=0;RPP=87.6977;RPPR=257.073;RPR=39;RUN=1;SAF=39;SAP=87.6977;SAR=0;SRF=117;SRP=257.073;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:90:68,22:68:2614:22:651:-31.7692,0,-208.358 0/1:24:16,8:16:607:8:282:-18.4913,0,-47.7438 0/1:44:33,9:33:1255:9:219:-7.10889,0,-100.405 dDocent_Contig_6246 16 . G A 1399.45 . AB=0.205797;ABP=262.385;AC=3;AF=0.5;AN=6;AO=71;CIGAR=1X;DP=345;DPB=345;DPRA=0;EPP=157.185;EPPR=597.994;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=0.99635;PAO=0;PQA=0;PQR=0;PRO=0;QA=2760;QR=10636;RO=274;RPL=0;RPP=157.185;RPPR=597.994;RPR=71;RUN=1;SAF=71;SAP=157.185;SAR=0;SRF=274;SRP=597.994;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:181:144,37:144:5602:37:1439:-75.2844,0,-449.587 0/1:68:50,18:50:1924:18:691:-42.0455,0,-152.924 0/1:96:80,16:80:3110:16:630:-28.1384,0,-251.118 dDocent_Contig_6247 1 . N G 76.8682 . AB=0;ABP=0;AC=2;AF=1;AN=2;AO=2;CIGAR=1X;DP=2;DPB=2;DPRA=0;EPP=7.35324;EPPR=0;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=0;NS=1;NUMALT=1;ODDS=5.99146;PAIRED=1;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=81;QR=0;RO=0;RPL=0;RPP=7.35324;RPPR=0;RPR=2;RUN=1;SAF=2;SAP=7.35324;SAR=0;SRF=0;SRP=0;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL ./.:.:.:.:.:.:.:. ./.:.:.:.:.:.:.:. 1/1:2:0,2:0:0:2:81:-7.68573,-0.60206,0 dDocent_Contig_6249 24 . T A 1829.46 . AB=0.220472;ABP=261.586;AC=3;AF=0.5;AN=6;AO=84;CIGAR=1X;DP=381;DPB=381;DPRA=0;EPP=185.414;EPPR=647.938;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=3359;QR=11853;RO=297;RPL=0;RPP=185.414;RPPR=647.938;RPR=84;RUN=1;SAF=84;SAP=185.414;SAR=0;SRF=297;SRP=647.938;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:222:163,59:163:6511:59:2354:-145.188,0,-518.859 0/1:67:60,7:60:2383:7:278:-5.22061,0,-194.461 0/1:92:74,18:74:2959:18:727:-38.0607,0,-238.692 dDocent_Contig_6250 56 . A G 294.755 . AB=0.285714;ABP=19.7617;AC=1;AF=0.166667;AN=6;AO=12;CIGAR=1X;DP=66;DPB=66;DPRA=3.5;EPP=29.068;EPPR=120.27;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=481;QR=2143;RO=54;RPL=12;RPP=29.068;RPPR=120.27;RPR=0;RUN=1;SAF=12;SAP=29.068;SAR=0;SRF=54;SRP=120.27;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:42:30,12:30:1187:12:481:-30.9983,0,-94.4684 0/0:5:5,0:5:197:0:0:0,-1.50515,-18.1055 0/0:19:19,0:19:759:0:0:0,-5.71957,-68.632 dDocent_Contig_6251 15 . C A 40.8679 . AB=0.12;ABP=65.7224;AC=2;AF=0.333333;AN=6;AO=6;CIGAR=1X;DP=70;DPB=70;DPRA=1.25;EPP=16.0391;EPPR=141.985;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=241;QR=2537;RO=64;RPL=0;RPP=16.0391;RPPR=141.985;RPR=6;RUN=1;SAF=6;SAP=16.0391;SAR=0;SRF=64;SRP=141.985;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:20:20,0:20:788:0:0:0,-6.0206,-71.2374 0/1:32:29,3:29:1153:3:120:-1.55435,0,-94.421 0/1:18:15,3:15:596:3:121:-5.86166,0,-48.5533 dDocent_Contig_6252 12 . C T 193.479 . AB=0.0961145;ABP=695.861;AC=1;AF=0.166667;AN=6;AO=114;CIGAR=1X;DP=1434;DPB=1434;DPRA=0;EPP=217.034;EPPR=2392;GTI=0;LEN=1;MEANALT=3;MQM=55.4912;MQMR=59.1588;NS=3;NUMALT=1;ODDS=0;PAIRED=0.745614;PAIREDR=0.685603;PAO=0;PQA=0;PQR=0;PRO=0;QA=4390;QR=49104;RO=1285;RPL=0;RPP=250.558;RPPR=2793.35;RPR=114;RUN=1;SAF=110;SAP=217.034;SAR=4;SRF=1237;SRP=2392;SRR=48;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:577:527,42:527:20153:42:1590:0,-35.0241,-1675.05 0/0:368:333,25:333:12684:25:962:0,-22.8245,-1049.42 0/1:489:425,47:425:16267:47:1838:-21.1718,0,-1305.2 dDocent_Contig_6253 31 . C G 55.4967 . AB=0.12766;ABP=59.6072;AC=2;AF=0.333333;AN=6;AO=10;CIGAR=1X;DP=130;DPB=130;DPRA=0;EPP=24.725;EPPR=263.587;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=402;QR=4843;RO=120;RPL=0;RPP=24.725;RPPR=263.587;RPR=10;RUN=1;SAF=10;SAP=24.725;SAR=0;SRF=120;SRP=263.587;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:83:79,4:79:3193:4:164:0,-9.83559,-272.271 0/1:13:10,3:10:398:3:121:-7.36681,0,-32.2632 0/1:34:31,3:31:1252:3:117:-0.67356,0,-102.711 dDocent_Contig_6255 17 . G T 1089.33 . AB=0.0702703;ABP=299.751;AC=0;AF=0;AN=6;AO=13;CIGAR=1X2M1X3M;DP=185;DPB=185;DPRA=0;EPP=31.2394;EPPR=233.186;GTI=0;LEN=1;MEANALT=3.33333;MQM=60;MQMR=60;NS=3;NUMALT=3;ODDS=2.77556e-17;PAIRED=0;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=506;QR=3934;RO=106;RPL=0;RPP=31.2394;RPPR=233.186;RPR=13;RUN=1;SAF=13;SAP=31.2394;SAR=0;SRF=106;SRP=233.186;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|0:108:56,8,16,27:56:2075:8,16,27:304,633,1025:-67.1597,-59.0923,-226.44,-31.9186,-176.751,-196.861,0,-144.825,-117.653,-161.623 0|0:31:21,1,0,9:21:782:1,0,9:41,0,357:-23.0504,-25.9867,-89.6783,-29.3721,-89.9793,-93.3643,0,-60.5881,-63.9738,-61.2646 0|0:46:29,4,2,10:29:1077:4,2,10:161,79,400:-24.2455,-19.6995,-106.629,-26.4726,-101.331,-114.001,0,-74.8757,-81.6468,-85.139 dDocent_Contig_6256 65 . T C 33.6586 . AB=0;ABP=0;AC=0;AF=0;AN=6;AO=4;CIGAR=1X2M2X3M1X1M2X;DP=183;DPB=183;DPRA=0.985915;EPP=11.6962;EPPR=369.989;GTI=0;LEN=1;MEANALT=2;MQM=60;MQMR=60;NS=3;NUMALT=2;ODDS=0;PAIRED=0;PAIREDR=0.946746;PAO=0;PQA=0;PQR=0;PRO=0;QA=151;QR=6297;RO=169;RPL=4;RPP=11.6962;RPPR=369.989;RPR=0;RUN=1;SAF=4;SAP=11.6962;SAR=0;SRF=169;SRP=369.989;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|0:71:67,0,0:67:2530:0,0:0,0:0,-20.169,-227.519,-20.169,-227.519,-227.519 0|0:42:37,5,0:37:1379:5,0:194,0:-5.18958,0,-111.746,-16.3277,-113.251,-129.193 0|0:70:65,0,4:65:2388:0,4:0,151:0,-19.5669,-214.772,-7.18443,-202.395,-201.191 dDocent_Contig_6257 14 . T C 795.853 . AB=0.133333;ABP=160.659;AC=0;AF=0;AN=6;AO=18;CIGAR=4M2X3M;DP=135;DPB=134.222;DPRA=0;EPP=42.0968;EPPR=152.842;GTI=0;LEN=1;MEANALT=4.33333;MQM=60;MQMR=60;NS=3;NUMALT=4;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=701;QR=2600;RO=69;RPL=0;RPP=42.0968;RPPR=152.842;RPR=18;RUN=1;SAF=18;SAP=42.0968;SAR=0;SRF=69;SRP=152.842;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|0:48:22,3,3,6,13:22:828:3,3,6,13:118,120,225,518:-36.0391,-32.9548,-99.8867,-32.7755,-90.9034,-99.7079,-24.2416,-82.3659,-82.187,-90.2671,0,-58.1284,-57.9494,-49.4122,-63.9231 0|0:40:16,4,1,8,10:16:606:4,1,8,10:141,41,322,389:-27.1509,-20.4959,-68.9682,-28.5823,-66.7876,-77.9616,-5.4216,-43.6297,-51.7193,-52.6961,0,-38.2054,-46.2943,-23.1336,-46.669 0|0:47:31,0,2,4,10:31:1166:0,2,4,10:0,77,154,381:-21.9182,-31.2501,-126.78,-24.9277,-120.458,-119.856,-18.6057,-114.136,-107.814,-112.932,0,-95.5269,-89.2044,-82.8825,-92.5166 dDocent_Contig_6259 91 . C T 1896.91 . AB=0.747664;ABP=60.0165;AC=3;AF=0.5;AN=6;AO=80;CIGAR=1X;DP=107;DPB=107;DPRA=0;EPP=176.728;EPPR=61.6401;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=0.9375;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=2517;QR=910;RO=27;RPL=80;RPP=176.728;RPPR=61.6401;RPR=0;RUN=1;SAF=80;SAP=176.728;SAR=0;SRF=27;SRP=61.6401;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:46:6,40:6:198:40:1225:-96.6815,0,-4.2965 0/1:24:7,17:7:233:17:546:-42.2232,0,-14.0713 0/1:37:14,23:14:479:23:746:-56.3081,0,-32.2984 dDocent_Contig_6263 13 . C T 831.181 . AB=0.297521;ABP=46.0988;AC=2;AF=0.333333;AN=6;AO=38;CIGAR=1X;DP=231;DPB=231;DPRA=0;EPP=85.5263;EPPR=422.104;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=1437;QR=7241;RO=193;RPL=0;RPP=85.5263;RPPR=422.104;RPR=38;RUN=1;SAF=38;SAP=85.5263;SAR=0;SRF=193;SRP=422.104;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:110:108,2:108:4068:2:77:0,-25.8042,-358.923 0/1:46:34,12:34:1261:12:451:-27.0901,0,-99.9332 0/1:75:51,24:51:1912:24:909:-59.5508,0,-149.759 dDocent_Contig_6264 28 . T G 539.408 . AB=0.209677;ABP=93.7919;AC=2;AF=0.333333;AN=6;AO=26;CIGAR=1X3M1X2M;DP=170;DPB=169.143;DPRA=1.34783;EPP=59.4686;EPPR=293.988;GTI=0;LEN=1;MEANALT=3;MQM=60;MQMR=60;NS=3;NUMALT=2;ODDS=1.38778e-17;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=1020;QR=5250;RO=134;RPL=0;RPP=59.4686;RPPR=293.988;RPR=26;RUN=1;SAF=26;SAP=59.4686;SAR=0;SRF=134;SRP=293.988;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|1:94:63,23,5:63:2476:23,5:902,198:-55.3455,0,-196.892,-71.816,-201.293,-273.962 0|1:30:27,3,0:27:1039:3,0:118,0:-1.97199,0,-84.7813,-10.0998,-85.6843,-95.392 0|0:46:44,0,1:44:1735:0,1:0,39:0,-13.2453,-156.133,-12.8964,-155.631,-155.33 dDocent_Contig_6265 107 . N A 183.865 . AB=0;ABP=0;AC=4;AF=1;AN=4;AO=6;CIGAR=1X;DP=6;DPB=6;DPRA=0;EPP=16.0391;EPPR=0;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=0;NS=2;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=194;QR=0;RO=0;RPL=0;RPP=16.0391;RPPR=0;RPR=6;RUN=1;SAF=0;SAP=16.0391;SAR=6;SRF=0;SRP=0;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 1/1:4:0,4:0:0:4:136:-12.576,-1.20412,0 ./.:.:.:.:.:.:.:. 1/1:2:0,2:0:0:2:58:-5.50886,-0.60206,0 dDocent_Contig_6266 11 . G A 2578.4 . AB=0.0151099;ABP=1489.74;AC=0;AF=0;AN=6;AO=11;CIGAR=5M1X3M1X1M;DP=728;DPB=746.455;DPRA=0;EPP=26.8965;EPPR=593.651;GTI=0;LEN=1;MEANALT=22;MQM=60;MQMR=59.625;NS=3;NUMALT=6;ODDS=2.22045e-16;PAIRED=0.909091;PAIREDR=0.955882;PAO=0;PQA=0;PQR=0;PRO=0;QA=403;QR=10189;RO=272;RPL=0;RPP=26.8965;RPPR=593.651;RPR=11;RUN=1;SAF=11;SAP=26.8965;SAR=0;SRF=272;SRP=593.651;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|0:297:138,34,27,11,1,18,26:138:5177:34,27,11,1,18,26:1308,1055,433,39,716,1030:-65.8258,0,-413.817,-20.6337,-337.317,-436.559,-71.7472,-388.431,-409.066,-492.49,-104.162,-420.846,-441.481,-492.595,-527.915,-48.6418,-365.326,-385.961,-437.075,-469.49,-467.277,-22.5917,-339.276,-359.91,-411.025,-443.44,-387.919,-438.819 0|0:253:72,30,51,15,1,20,11:72:2661:30,51,15,1,20,11:1144,1947,555,32,790,428:-137.727,-66.3324,-274.949,0,-124.578,-202.295,-114.002,-238.58,-172.248,-327.134,-156.823,-281.402,-215.07,-329.072,-374.17,-95.1519,-219.73,-153.398,-267.4,-310.222,-306.78,-124.231,-248.809,-182.477,-296.479,-339.301,-277.629,-338.568 0|0:178:62,13,18,2,9,12,25:62:2351:13,18,2,9,12,25:515,687,77,332,475,960:-59.81,-36.0828,-221.946,-22.1155,-169.5,-206.472,-72.1518,-219.537,-205.569,-261.326,-51.3223,-198.707,-184.739,-234.776,-238.389,-39.3789,-186.764,-172.796,-222.833,-202.003,-225.543,0,-147.384,-133.416,-183.453,-162.623,-150.68,-182.249 dDocent_Contig_6267 107 . N A 66.4848 . AB=0;ABP=0;AC=2;AF=1;AN=2;AO=2;CIGAR=1X;DP=2;DPB=2;DPRA=0;EPP=7.35324;EPPR=0;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=0;NS=1;NUMALT=1;ODDS=5.99146;PAIRED=1;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=70;QR=0;RO=0;RPL=0;RPP=7.35324;RPPR=0;RPR=2;RUN=1;SAF=0;SAP=7.35324;SAR=2;SRF=0;SRP=0;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 1/1:2:0,2:0:0:2:70:-6.6474,-0.60206,0 ./.:.:.:.:.:.:.:. ./.:.:.:.:.:.:.:. dDocent_Contig_6269 33 . T C 5899.96 . AB=0.765182;ABP=153.879;AC=3;AF=0.5;AN=6;AO=189;CIGAR=1X;DP=247;DPB=247;DPRA=0;EPP=413.419;EPPR=126.784;GTI=0;LEN=1;MEANALT=1.33333;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=7439;QR=2271;RO=57;RPL=0;RPP=413.419;RPPR=126.784;RPR=189;RUN=1;SAF=189;SAP=413.419;SAR=0;SRF=57;SRP=126.784;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:126:23,103:23:918:103:4080:-329.257,0,-44.9927 0/1:51:8,42:8:318:42:1664:-134.572,0,-13.5611 0/1:70:26,44:26:1035:44:1695:-131.69,0,-72.3688 dDocent_Contig_6270 42 . G A 445.415 . AB=0.327273;ABP=17.2631;AC=2;AF=0.333333;AN=6;AO=18;CIGAR=1X;DP=68;DPB=68;DPRA=2.11538;EPP=42.0968;EPPR=111.584;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=0.888889;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=710;QR=1907;RO=50;RPL=0;RPP=42.0968;RPPR=111.584;RPR=18;RUN=1;SAF=18;SAP=42.0968;SAR=0;SRF=50;SRP=111.584;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:34:24,10:24:908:10:392:-25.3999,0,-71.7832 0/0:13:13,0:13:495:0:0:0,-3.91339,-44.8883 0/1:21:13,8:13:504:8:318:-22.6645,0,-39.3806 dDocent_Contig_6271 26 . T C 2016.51 . AB=0.544;ABP=5.11229;AC=3;AF=0.5;AN=6;AO=68;CIGAR=1X;DP=125;DPB=125;DPRA=0;EPP=150.67;EPPR=126.784;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=2710;QR=2276;RO=57;RPL=0;RPP=150.67;RPPR=126.784;RPR=68;RUN=1;SAF=68;SAP=150.67;SAR=0;SRF=57;SRP=126.784;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:61:35,26:35:1413:26:1050:-76.4259,0,-109.059 0/1:30:7,23:7:285:23:884:-70.8247,0,-16.9935 0/1:34:15,19:15:578:19:776:-59.923,0,-42.116 dDocent_Contig_6273 107 . N T 163.042 . AB=0;ABP=0;AC=6;AF=1;AN=6;AO=5;CIGAR=1X;DP=5;DPB=5;DPRA=0;EPP=13.8677;EPPR=0;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=0;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=165;QR=0;RO=0;RPL=0;RPP=13.8677;RPPR=0;RPR=5;RUN=1;SAF=0;SAP=13.8677;SAR=5;SRF=0;SRP=0;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 1/1:2:0,2:0:0:2:68:-6.45788,-0.60206,0 1/1:1:0,1:0:0:1:31:-3.09945,-0.30103,0 1/1:2:0,2:0:0:2:66:-6.26818,-0.60206,0 dDocent_Contig_6275 24 . A G 1049.85 . AB=0.413043;ABP=9.05266;AC=3;AF=0.5;AN=6;AO=38;CIGAR=1X;DP=92;DPB=92;DPRA=0;EPP=85.5263;EPPR=120.27;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=1524;QR=2148;RO=54;RPL=0;RPP=85.5263;RPPR=120.27;RPR=38;RUN=1;SAF=38;SAP=85.5263;SAR=0;SRF=54;SRP=120.27;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:56:37,19:37:1478:19:759:-51.7722,0,-116.407 0/1:12:6,6:6:229:6:242:-18.5446,0,-17.3617 0/1:24:11,13:11:441:13:523:-40.191,0,-32.8197 dDocent_Contig_6277 36 . A G 247.517 . AB=0.285714;ABP=16.9698;AC=1;AF=0.166667;AN=6;AO=10;CIGAR=1X;DP=71;DPB=71;DPRA=1.94444;EPP=24.725;EPPR=135.47;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=405;QR=2455;RO=61;RPL=0;RPP=24.725;RPPR=135.47;RPR=10;RUN=1;SAF=10;SAP=24.725;SAR=0;SRF=61;SRP=135.47;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:35:25,10:25:995:10:405:-26.2746,0,-79.3109 0/0:8:8,0:8:326:0:0:0,-2.40824,-29.7099 0/0:28:28,0:28:1134:0:0:0,-8.42884,-102.34 dDocent_Contig_6278 11 . C T 1123.49 . AB=0.414414;ABP=10.0725;AC=3;AF=0.5;AN=6;AO=46;CIGAR=1M1X3M;DP=111;DPB=109.2;DPRA=0;EPP=102.898;EPPR=137.642;GTI=0;LEN=1;MEANALT=1.33333;MQM=60;MQMR=60;NS=3;NUMALT=2;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=1664;QR=2436;RO=62;RPL=0;RPP=102.898;RPPR=137.642;RPR=46;RUN=1;SAF=46;SAP=102.898;SAR=0;SRF=62;SRP=137.642;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|1:50:31,0,19:31:1222:0,19:0,691:-47.4648,-56.7968,-157.353,0,-100.932,-95.2121 0|1:25:16,0,9:16:619:0,9:0,325:-22.0695,-26.8859,-77.7468,0,-51.231,-48.5218 0|1:36:15,3,18:15:595:3,18:113,648:-48.3374,-43.5907,-91.6836,0,-39.7395,-43.5774 dDocent_Contig_6279 23 . A T 2084.02 . AB=0.279461;ABP=128.48;AC=3;AF=0.5;AN=6;AO=83;CIGAR=1X;DP=297;DPB=297;DPRA=0;EPP=183.243;EPPR=467.705;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=1.38778e-17;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=3361;QR=8511;RO=214;RPL=0;RPP=183.243;RPPR=467.705;RPR=83;RUN=1;SAF=83;SAP=183.243;SAR=0;SRF=214;SRP=467.705;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:171:120,51:120:4761:51:2067:-134.73,0,-376.93 0/1:48:31,17:31:1237:17:688:-47.7983,0,-97.1506 0/1:78:63,15:63:2513:15:606:-31.397,0,-202.824 dDocent_Contig_6280 11 . C T 12743.5 . AB=0.0992167;ABP=1071.73;AC=1;AF=0.166667;AN=6;AO=76;CIGAR=1X5M1X1M;DP=766;DPB=764;DPRA=0;EPP=168.042;EPPR=161.528;GTI=0;LEN=1;MEANALT=10.3333;MQM=59.7895;MQMR=60;NS=3;NUMALT=4;ODDS=0;PAIRED=1;PAIREDR=0.958904;PAO=0;PQA=0;PQR=0;PRO=0;QA=2798;QR=2840;RO=73;RPL=0;RPP=168.042;RPPR=161.528;RPR=76;RUN=1;SAF=76;SAP=168.042;SAR=0;SRF=73;SRP=161.528;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|0:319:24,16,28,54,181:24:956:16,28,54,181:618,1038,2135,7126:-596.298,-553.085,-626.995,-518.597,-546.886,-588.895,-505.058,-533.346,-498.86,-567.527,-19.6962,-47.9906,-13.4988,0,-43.9483 1|0:229:20,1,29,45,111:20:755:1,29,45,111:36,1085,1771,4411:-379.717,-382.811,-444.382,-296.892,-355.837,-350.034,-301.391,-360.333,-274.419,-349.714,-26.9788,-85.9328,0,-4.53188,-55.4456 0|0:218:29,9,19,32,95:29:1129:9,19,32,95:347,675,1250,3801:-303.86,-284.489,-374.565,-257.603,-322.287,-344.668,-248.368,-313.05,-286.166,-331.517,0,-64.6916,-37.8049,-28.582,-64.197 dDocent_Contig_6283 35 . C G 845.311 . AB=0.395062;ABP=10.7579;AC=2;AF=0.333333;AN=6;AO=32;CIGAR=1X;DP=98;DPB=98;DPRA=2.38235;EPP=72.4974;EPPR=144.156;GTI=0;LEN=1;MEANALT=1.5;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=1243;QR=2514;RO=65;RPL=0;RPP=72.4974;RPPR=144.156;RPR=32;RUN=1;SAF=32;SAP=72.4974;SAR=0;SRF=65;SRP=144.156;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:50:26,23:26:1041:23:891:-65.3475,0,-78.8344 0/0:17:17,0:17:624:0:0:0,-5.11751,-56.4759 0/1:31:22,9:22:849:9:352:-22.7065,0,-67.383 dDocent_Contig_6287 19 . G A 57.1587 . AB=0.166667;ABP=31.9633;AC=2;AF=0.333333;AN=6;AO=5;CIGAR=1X;DP=51;DPB=51;DPRA=0.714286;EPP=13.8677;EPPR=102.898;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=194;QR=1831;RO=46;RPL=0;RPP=13.8677;RPPR=102.898;RPR=5;RUN=1;SAF=5;SAP=13.8677;SAR=0;SRF=46;SRP=102.898;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:21:21,0:21:829:0:0:0,-6.32163,-74.9212 0/1:13:10,3:10:402:3:114:-6.71842,0,-32.6263 0/1:17:15,2:15:600:2:80:-2.47428,0,-49.2208 dDocent_Contig_6288 12 . T C 73.4045 . AB=0.106557;ABP=167.045;AC=1;AF=0.166667;AN=6;AO=32;CIGAR=1X2M1X2M1X;DP=391;DPB=391;DPRA=0;EPP=72.4974;EPPR=763.026;GTI=0;LEN=1;MEANALT=3;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=1239;QR=13678;RO=350;RPL=0;RPP=72.4974;RPPR=763.026;RPR=32;RUN=1;SAF=32;SAP=72.4974;SAR=0;SRF=350;SRP=763.026;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|0:240:215,18:215:8404:18:692:0,-7.92404,-693.4 0|0:29:27,1:27:1044:1:40:0,-4.83273,-90.2702 0|1:122:108,13:108:4230:13:507:-9.16435,0,-343.914 dDocent_Contig_6289 16 . C T 229.94 . AB=0.142857;ABP=41.7866;AC=3;AF=0.5;AN=6;AO=5;CIGAR=1X4M;DP=49;DPB=49;DPRA=0;EPP=13.8677;EPPR=72.4974;GTI=0;LEN=1;MEANALT=2;MQM=36;MQMR=60;NS=3;NUMALT=2;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=176;QR=1248;RO=32;RPL=0;RPP=13.8677;RPPR=72.4974;RPR=5;RUN=1;SAF=5;SAP=13.8677;SAR=0;SRF=32;SRP=72.4974;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|1:14:11,3,0:11:433:3,0:116,0:-6.55275,0,-35.1104,-9.86408,-36.0135,-45.4912 0|1:18:14,3,1:14:549:3,1:120,35:-5.71522,0,-44.3069,-7.32776,-42.5939,-52.168 0|1:17:7,6,4:7:266:6,4:224,141:-16.2489,0,-20.0383,-7.86047,-11.3497,-28.4701 dDocent_Contig_6290 54 . G A 2596.34 . AB=0.567742;ABP=9.18849;AC=3;AF=0.5;AN=6;AO=88;CIGAR=1X;DP=155;DPB=155;DPRA=0;EPP=194.1;EPPR=148.499;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=3455;QR=2650;RO=67;RPL=88;RPP=194.1;RPPR=148.499;RPR=0;RUN=1;SAF=88;SAP=194.1;SAR=0;SRF=67;SRP=148.499;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:98:44,54:44:1762:54:2137:-163.012,0,-129.297 0/1:17:11,6:11:447:6:245:-17.312,0,-35.4686 0/1:40:12,28:12:441:28:1073:-84.8335,0,-27.9867 dDocent_Contig_6292 52 . T C 10347 . AB=0.865385;ABP=183.911;AC=4;AF=0.666667;AN=6;AO=318;CIGAR=1X;DP=351;DPB=351;DPRA=0;EPP=693.539;EPPR=74.6689;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=12500;QR=1168;RO=33;RPL=318;RPP=693.539;RPPR=74.6689;RPR=0;RUN=1;SAF=318;SAP=693.539;SAR=0;SRF=33;SRP=74.6689;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 1/1:195:12,183:12:438:183:7178:-605.942,-18.941,0 0/1:67:9,58:9:302:58:2274:-184.665,0,-7.329 0/1:89:12,77:12:428:77:3048:-247.615,0,-12.0599 dDocent_Contig_6293 61 . T C 45.2349 . AB=0.176471;ABP=18.4661;AC=1;AF=0.166667;AN=6;AO=14;CIGAR=1X;DP=162;DPB=162;DPRA=0;EPP=33.4109;EPPR=282.426;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=58.5608;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=0.966216;PAO=0;PQA=0;PQR=0;PRO=0;QA=567;QR=5654;RO=148;RPL=14;RPP=33.4109;RPPR=324.388;RPR=0;RUN=1;SAF=14;SAP=33.4109;SAR=0;SRF=143;SRP=282.426;SRR=5;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:115:106,9:106:4077:9:363:0,-1.58467,-327.448 0/1:17:14,3:14:511:3:123:-6.34728,0,-38.4547 0/0:30:28,2:28:1066:2:81:0,-1.34517,-88.5566 dDocent_Contig_6295 16 . G A 8910.07 . AB=0.456808;ABP=14.0775;AC=3;AF=0.5;AN=6;AO=312;CIGAR=1X;DP=683;DPB=683;DPRA=0;EPP=680.51;EPPR=808.627;GTI=0;LEN=1;MEANALT=1;MQM=59.8526;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=12257;QR=14704;RO=371;RPL=0;RPP=680.51;RPPR=808.627;RPR=312;RUN=1;SAF=312;SAP=680.51;SAR=0;SRF=371;SRP=808.627;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:286:153,133:153:6127:133:5230:-384.475,0,-465.088 0/1:184:108,76:108:4236:76:2969:-211.936,0,-325.837 0/1:213:110,103:110:4341:103:4058:-300.119,0,-326.517 dDocent_Contig_6296 15 . A G 309.149 . AB=0.267857;ABP=29.2231;AC=2;AF=0.333333;AN=6;AO=16;CIGAR=1X;DP=74;DPB=74;DPRA=0;EPP=37.7539;EPPR=128.956;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=3.46945e-18;PAIRED=1;PAIREDR=0.982759;PAO=0;PQA=0;PQR=0;PRO=0;QA=599;QR=2094;RO=58;RPL=0;RPP=37.7539;RPPR=128.956;RPR=16;RUN=1;SAF=16;SAP=37.7539;SAR=0;SRF=58;SRP=128.956;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:27:21,6:21:763:6:229:-12.8481,0,-60.8557 0/1:29:20,9:20:727:9:333:-21.5897,0,-57.025 0/0:18:17,1:17:604:1:37:0,-1.72071,-50.9874 dDocent_Contig_6297 7 . A G 4392.98 . AB=0.714286;ABP=97.9347;AC=3;AF=0.5;AN=6;AO=170;CIGAR=1X;DP=238;DPB=238;DPRA=0;EPP=372.161;EPPR=141.985;GTI=0;LEN=1;MEANALT=1.66667;MQM=59.4765;MQMR=60;NS=3;NUMALT=1;ODDS=1.38778e-17;PAIRED=0.988235;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=5728;QR=2405;RO=64;RPL=0;RPP=372.161;RPPR=141.985;RPR=170;RUN=1;SAF=170;SAP=372.161;SAR=0;SRF=64;SRP=141.985;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:69:15,54:15:573:54:1780:-138.994,0,-31.1404 0/1:100:28,70:28:1023:70:2420:-188.333,0,-62.7149 0/1:69:21,46:21:809:46:1528:-117.494,0,-52.8326 dDocent_Contig_6298 29 . C T 175.227 . AB=0.146341;ABP=92.0936;AC=1;AF=0.166667;AN=6;AO=12;CIGAR=1X;DP=112;DPB=112;DPRA=5.46667;EPP=29.068;EPPR=220.158;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=482;QR=3995;RO=100;RPL=0;RPP=29.068;RPPR=220.158;RPR=12;RUN=1;SAF=12;SAP=29.068;SAR=0;SRF=100;SRP=220.158;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:82:70,12:70:2795:12:482:-19.0456,0,-226.976 0/0:13:13,0:13:523:0:0:0,-3.91339,-47.4155 0/0:17:17,0:17:677:0:0:0,-5.11751,-61.2601 dDocent_Contig_6299 81 . A G 702.688 . AB=0.46875;ABP=3.55317;AC=3;AF=0.5;AN=6;AO=30;CIGAR=1X;DP=64;DPB=64;DPRA=0;EPP=68.1545;EPPR=76.8404;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=1045;QR=1179;RO=34;RPL=30;RPP=68.1545;RPPR=76.8404;RPR=0;RUN=1;SAF=30;SAP=68.1545;SAR=0;SRF=34;SRP=76.8404;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:26:19,7:19:667:7:242:-14.2909,0,-52.5278 0/1:17:7,10:7:245:10:348:-26.5385,0,-17.2734 0/1:21:8,13:8:267:13:455:-34.9622,0,-18.0329 dDocent_Contig_6300 15 . G A 334.477 . AB=0.413793;ABP=4.88226;AC=1;AF=0.166667;AN=6;AO=12;CIGAR=1X;DP=152;DPB=152;DPRA=0.471545;EPP=29.068;EPPR=307.016;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=485;QR=5555;RO=140;RPL=0;RPP=29.068;RPPR=307.016;RPR=12;RUN=1;SAF=12;SAP=29.068;SAR=0;SRF=140;SRP=307.016;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:92:92,0:92:3655:0:0:0,-27.6948,-328.967 0/1:29:17,12:17:680:12:485:-35.2716,0,-52.8006 0/0:31:31,0:31:1220:0:0:0,-9.33193,-110.077 dDocent_Contig_6301 138 . A T 304.709 . AB=0.318182;ABP=15.6443;AC=3;AF=0.5;AN=6;AO=14;CIGAR=1X;DP=44;DPB=44;DPRA=0;EPP=33.4109;EPPR=68.1545;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=534;QR=1107;RO=30;RPL=0;RPP=33.4109;RPPR=68.1545;RPR=14;RUN=1;SAF=0;SAP=33.4109;SAR=14;SRF=0;SRP=68.1545;SRR=30;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:16:14,2:14:532:2:74:-2.20929,0,-43.4067 0/1:14:8,6:8:290:6:233:-17.1257,0,-22.2311 0/1:14:8,6:8:285:6:227:-16.5775,0,-21.7739 dDocent_Contig_6302 20 . A T 4082.3 . AB=0.588235;ABP=17.9551;AC=3;AF=0.5;AN=6;AO=130;CIGAR=2M1X;DP=221;DPB=241.667;DPRA=0;EPP=285.302;EPPR=139.813;GTI=0;LEN=1;MEANALT=4.66667;MQM=59.9462;MQMR=60;NS=3;NUMALT=2;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=5249;QR=2530;RO=63;RPL=0;RPP=285.302;RPPR=139.813;RPR=130;RUN=1;SAF=130;SAP=285.302;SAR=0;SRF=63;SRP=139.813;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|1:118:42,6,61:42:1690:6,61:245,2479:-191.831,-184.258,-321.73,0,-119.065,-120.919 0|1:24:8,2,13:8:324:2,13:78,523:-40.6983,-36.6965,-62.8119,0,-20.3145,-22.8099 0|1:79:13,4,56:13:516:4,56:159,2247:-181.223,-172.046,-213.317,0,-29.3851,-25.6183 dDocent_Contig_6303 10 . G A 3315.31 . AB=0.09375;ABP=186.5;AC=0;AF=0;AN=6;AO=12;CIGAR=2X;DP=169;DPB=169;DPRA=0;EPP=29.068;EPPR=107.241;GTI=0;LEN=1;MEANALT=2;MQM=60;MQMR=60;NS=3;NUMALT=2;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=459;QR=1900;RO=48;RPL=0;RPP=29.068;RPPR=107.241;RPR=12;RUN=1;SAF=12;SAP=29.068;SAR=0;SRF=48;SRP=107.241;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|0:61:15,3,43:15:598:3,43:113,1677:-133.331,-128.588,-176.934,0,-40.0086,-36.3202 0|0:41:6,0,35:6:239:0,35:0,1386:-112.66,-114.466,-134.148,0,-20.0792,-9.54315 0|0:67:27,9,31:27:1063:9,31:346,1207:-91.0631,-70.7877,-155.526,0,-59.0505,-78.1206 dDocent_Contig_6304 62 . A T 221.944 . AB=0.529412;ABP=3.13803;AC=1;AF=0.166667;AN=6;AO=10;CIGAR=1X;DP=104;DPB=104;DPRA=1.35714;EPP=24.725;EPPR=207.129;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=358;QR=3583;RO=94;RPL=10;RPP=24.725;RPPR=207.129;RPR=0;RUN=1;SAF=10;SAP=24.725;SAR=0;SRF=94;SRP=207.129;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:59:58,1:58:2242:1:38:0,-13.9635,-198.164 0/1:17:8,9:8:312:9:320:-24.0183,0,-23.3249 0/0:28:28,0:28:1029:0:0:0,-8.42884,-92.909 dDocent_Contig_6305 38 . T C 5357.87 . AB=0.385859;ABP=59.0255;AC=3;AF=0.5;AN=6;AO=191;CIGAR=1X;DP=495;DPB=495;DPRA=0;EPP=417.762;EPPR=663.138;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=7666;QR=12055;RO=304;RPL=0;RPP=417.762;RPPR=663.138;RPR=191;RUN=1;SAF=191;SAP=417.762;SAR=0;SRF=304;SRP=663.138;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:300:181,119:181:7174:119:4794:-341.033,0,-554.993 0/1:82:44,38:44:1737:38:1487:-109.394,0,-131.87 0/1:113:79,34:79:3144:34:1385:-90.8824,0,-249.02 dDocent_Contig_6306 30 . G A 1441.8 . AB=0.401515;ABP=14.1309;AC=3;AF=0.5;AN=6;AO=53;CIGAR=1X;DP=132;DPB=132;DPRA=0;EPP=118.098;EPPR=174.557;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=2094;QR=3132;RO=79;RPL=0;RPP=118.098;RPPR=174.557;RPR=53;RUN=1;SAF=53;SAP=118.098;SAR=0;SRF=79;SRP=174.557;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:65:37,28:37:1486:28:1119:-81.4275,0,-114.42 0/1:44:24,20:24:927:20:775:-56.8199,0,-70.4933 0/1:23:18,5:18:719:5:200:-11.4559,0,-58.1099 dDocent_Contig_6307 13 . A G 526.412 . AB=0.198529;ABP=110.37;AC=3;AF=0.5;AN=6;AO=27;CIGAR=1X;DP=136;DPB=136;DPRA=0;EPP=61.6401;EPPR=239.701;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=1089;QR=4314;RO=109;RPL=0;RPP=61.6401;RPPR=239.701;RPR=27;RUN=1;SAF=27;SAP=61.6401;SAR=0;SRF=109;SRP=239.701;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:71:54,17:54:2121:17:689:-40.9654,0,-169.69 0/1:26:20,6:20:805:6:237:-13.8735,0,-64.9412 0/1:39:35,4:35:1388:4:163:-3.31826,0,-113.437 dDocent_Contig_6308 67 . C A 42.2238 . AB=0.157895;ABP=22.325;AC=1;AF=0.166667;AN=6;AO=3;CIGAR=1X;DP=43;DPB=43;DPRA=1.58333;EPP=9.52472;EPPR=87.6977;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=123;QR=1495;RO=39;RPL=3;RPP=9.52472;RPPR=87.6977;RPR=0;RUN=1;SAF=3;SAP=9.52472;SAR=0;SRF=39;SRP=87.6977;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:19:16,3:16:623:3:123:-5.74522,0,-50.6771 0/0:7:7,0:7:278:0:0:0,-2.10721,-25.3907 0/0:17:16,0:16:594:0:0:0,-4.81648,-53.4977 dDocent_Contig_6309 38 . C T 399.852 . AB=0.140625;ABP=218.393;AC=1;AF=0.166667;AN=6;AO=54;CIGAR=1X;DP=688;DPB=688;DPRA=0;EPP=120.27;EPPR=1347.15;GTI=0;LEN=1;MEANALT=2;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=2.77556e-17;PAIRED=0.0185185;PAIREDR=0.854604;PAO=0;PQA=0;PQR=0;PRO=0;QA=2172;QR=24566;RO=619;RPL=0;RPP=120.27;RPPR=1347.15;RPR=54;RUN=1;SAF=54;SAP=120.27;SAR=0;SRF=619;SRP=1347.15;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:373:345,20:345:13613:20:806:0,-37.3959,-1151.3 0/0:123:115,7:115:4571:7:278:0,-11.7345,-385.927 0/1:192:159,27:159:6382:27:1088:-41.8091,0,-517.704 dDocent_Contig_6310 24 . G A 10337.3 . AB=0.837638;ABP=271.351;AC=4;AF=0.666667;AN=6;AO=327;CIGAR=1M1D4M1X3M1D1M;DP=382;DPB=324.583;DPRA=0;EPP=713.082;EPPR=79.0118;GTI=0;LEN=1;MEANALT=3.33333;MQM=60;MQMR=60;NS=3;NUMALT=2;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=12705;QR=1386;RO=35;RPL=0;RPP=713.082;RPPR=79.0118;RPR=327;RUN=1;SAF=327;SAP=713.082;SAR=0;SRF=35;SRP=79.0118;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|1:203:17,171,12:17:674:171,12:6669,460:-543.026,0,-4.01097,-510.396,-17.7433,-562.264 0|1:68:10,56,0:10:394:56,0:2180,0:-176.126,0,-15.5528,-179.137,-32.4105,-211.553 1|1:111:8,100,0:8:318:100,0:3856,0:-318.102,-3.91791,0,-320.511,-30.103,-346.693 dDocent_Contig_6311 21 . T C 61.8634 . AB=0.16129;ABP=33.9012;AC=2;AF=0.333333;AN=6;AO=5;CIGAR=1X;DP=46;DPB=46;DPRA=1.03333;EPP=13.8677;EPPR=92.0407;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=0.6;PAIREDR=0.95122;PAO=0;PQA=0;PQR=0;PRO=0;QA=200;QR=1624;RO=41;RPL=0;RPP=13.8677;RPPR=92.0407;RPR=5;RUN=1;SAF=5;SAP=13.8677;SAR=0;SRF=41;SRP=92.0407;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:20:18,2:18:718:2:79:-1.47703,0,-58.9253 0/1:11:8,3:8:323:3:121:-7.96887,0,-26.1273 0/0:15:15,0:15:583:0:0:0,-4.51545,-52.8023 dDocent_Contig_6312 42 . A C 112.475 . AB=0.105263;ABP=28.7251;AC=0;AF=0;AN=6;AO=2;CIGAR=1X2M1X;DP=38;DPB=38;DPRA=3.16667;EPP=7.35324;EPPR=65.983;GTI=0;LEN=1;MEANALT=2;MQM=60;MQMR=60;NS=3;NUMALT=2;ODDS=3.46945e-18;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=81;QR=1119;RO=29;RPL=0;RPP=7.35324;RPPR=65.983;RPR=2;RUN=1;SAF=2;SAP=7.35324;SAR=0;SRF=29;SRP=65.983;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|0:19:15,2,2:15:578:2,2:81,82:-2.25518,-0.0939437,-46.9299,0,-40.7609,-46.8403 0|0:13:8,0,5:8:307:0,5:0,177:-12.3527,-14.7609,-39.9756,0,-25.5798,-24.0746 0|0:6:6,0,0:6:234:0,0:0,0:0,-1.80618,-21.4292,-1.80618,-21.4292,-21.4292 dDocent_Contig_6313 107 . N A 388.435 . AB=0;ABP=0;AC=4;AF=1;AN=4;AO=13;CIGAR=1X;DP=13;DPB=13;DPRA=0;EPP=31.2394;EPPR=0;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=0;NS=2;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=421;QR=0;RO=0;RPL=0;RPP=31.2394;RPPR=0;RPR=13;RUN=1;SAF=0;SAP=31.2394;SAR=13;SRF=0;SRP=0;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 1/1:11:0,11:0:0:11:352:-31.9893,-3.31133,0 ./.:.:.:.:.:.:.:. 1/1:2:0,2:0:0:2:69:-6.55266,-0.60206,0 dDocent_Contig_6314 34 . G A 806.417 . 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A T 959.219 . AB=0.291045;ABP=53.8292;AC=3;AF=0.5;AN=6;AO=39;CIGAR=3M1X3M;DP=134;DPB=128.714;DPRA=0;EPP=87.6977;EPPR=168.042;GTI=0;LEN=1;MEANALT=3.33333;MQM=60;MQMR=60;NS=3;NUMALT=2;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=1513;QR=3005;RO=76;RPL=0;RPP=87.6977;RPPR=168.042;RPR=39;RUN=1;SAF=39;SAP=87.6977;SAR=0;SRF=76;SRP=168.042;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|1:67:41,1,20:41:1621:1,20:39,774:-51.2209,-60.3573,-193.46,0,-130.19,-127.375 0|1:26:12,2,11:12:470:2,11:68,428:-31.5818,-29.6855,-67.7315,0,-33.1637,-35.3612 0|1:41:23,8,8:23:914:8,8:298,311:-18.6326,-1.17619,-74.0214,0,-50.8796,-72.8542 dDocent_Contig_6317 67 . T C 573.019 . 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G A 2812.99 . AB=0.431624;ABP=12.5128;AC=3;AF=0.5;AN=6;AO=101;CIGAR=1X;DP=234;DPB=234;DPRA=0;EPP=222.329;EPPR=285.302;GTI=0;LEN=1;MEANALT=1.33333;MQM=60;MQMR=55.0308;NS=3;NUMALT=1;ODDS=0;PAIRED=0;PAIREDR=0.876923;PAO=0;PQA=0;PQR=0;PRO=0;QA=3955;QR=5169;RO=130;RPL=0;RPP=222.329;RPPR=285.302;RPR=101;RUN=1;SAF=101;SAP=222.329;SAR=0;SRF=130;SRP=285.302;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:107:75,29:75:2967:29:1130:-70.2787,0,-218.236 0/1:71:23,48:23:910:48:1868:-146.972,0,-50.4392 0/1:56:32,24:32:1292:24:957:-69.5716,0,-96.3431 dDocent_Contig_6326 11 . G T 316.13 . 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AB=0.647541;ABP=26.0777;AC=3;AF=0.5;AN=6;AO=79;CIGAR=1X;DP=122;DPB=122;DPRA=0;EPP=174.557;EPPR=96.3836;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=3109;QR=1718;RO=43;RPL=0;RPP=174.557;RPPR=96.3836;RPR=79;RUN=1;SAF=79;SAP=174.557;SAR=0;SRF=43;SRP=96.3836;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:83:28,55:28:1113:55:2191:-172.38,0,-75.465 0/1:14:8,6:8:324:6:209:-14.9235,0,-25.315 0/1:25:7,18:7:281:18:709:-56.6051,0,-18.1353 dDocent_Contig_6331 13 . G T 630.24 . AB=0.511628;ABP=3.0608;AC=3;AF=0.5;AN=6;AO=22;CIGAR=1X;DP=43;DPB=43;DPRA=0;EPP=50.7827;EPPR=48.6112;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=0.954545;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=893;QR=841;RO=21;RPL=0;RPP=50.7827;RPPR=48.6112;RPR=22;RUN=1;SAF=22;SAP=50.7827;SAR=0;SRF=21;SRP=48.6112;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:23:6,17:6:242:17:689:-55.4143,0,-15.2333 0/1:8:5,3:5:200:3:122:-8.96425,0,-15.9708 0/1:12:10,2:10:399:2:82:-4.16732,0,-32.6527 dDocent_Contig_6334 36 . G A 802.09 . AB=0.190909;ABP=185.572;AC=3;AF=0.5;AN=6;AO=42;CIGAR=1X;DP=220;DPB=220;DPRA=0;EPP=94.2121;EPPR=389.532;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=1677;QR=7113;RO=178;RPL=0;RPP=94.2121;RPPR=389.532;RPR=42;RUN=1;SAF=42;SAP=94.2121;SAR=0;SRF=178;SRP=389.532;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:130:111,19:111:4413:19:747:-28.4182,0,-357.976 0/1:29:21,8:21:850:8:327:-21.0702,0,-68.0809 0/1:61:46,15:46:1850:15:603:-36.2435,0,-148.344 dDocent_Contig_6335 23 . G A 2890.22 . AB=0.226252;ABP=379.883;AC=3;AF=0.5;AN=6;AO=131;CIGAR=1X;DP=579;DPB=579;DPRA=0;EPP=287.473;EPPR=975.83;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=59.942;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=0.991071;PAO=0;PQA=0;PQR=0;PRO=0;QA=5202;QR=17840;RO=448;RPL=0;RPP=287.473;RPPR=975.83;RPR=131;RUN=1;SAF=131;SAP=287.473;SAR=0;SRF=448;SRP=975.83;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:287:215,72:215:8554:72:2828:-168.237,0,-682.954 0/1:122:94,28:94:3736:28:1116:-63.9962,0,-299.482 0/1:170:139,31:139:5550:31:1258:-62.3109,0,-448.148 dDocent_Contig_6336 12 . A G 57.2811 . AB=0.230769;ABP=11.1951;AC=1;AF=0.166667;AN=6;AO=5;CIGAR=1X;DP=46;DPB=46;DPRA=0;EPP=13.8677;EPPR=92.0407;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=205;QR=1645;RO=41;RPL=0;RPP=13.8677;RPPR=92.0407;RPR=5;RUN=1;SAF=5;SAP=13.8677;SAR=0;SRF=41;SRP=92.0407;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:15:14,1:14:558:1:41:0,-0.420883,-46.4687 0/0:18:17,1:17:689:1:41:0,-1.32397,-58.2445 0/1:13:10,3:10:398:3:123:-7.5514,0,-32.2634 dDocent_Contig_6337 31 . C A 248.007 . AB=0.205882;ABP=54.1038;AC=3;AF=0.5;AN=6;AO=14;CIGAR=1X;DP=68;DPB=68;DPRA=0;EPP=33.4109;EPPR=118.098;GTI=0;LEN=1;MEANALT=1.33333;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=553;QR=2084;RO=53;RPL=0;RPP=33.4109;RPPR=118.098;RPR=14;RUN=1;SAF=14;SAP=33.4109;SAR=0;SRF=53;SRP=118.098;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:34:25,8:25:968:8:321:-18.9151,0,-77.0702 0/1:25:21,4:21:841:4:150:-6.33795,0,-68.4788 0/1:9:7,2:7:275:2:82:-5.07041,0,-22.4081 dDocent_Contig_6338 35 . G A 290.942 . AB=0.25;ABP=31.2394;AC=2;AF=0.333333;AN=6;AO=14;CIGAR=1X;DP=75;DPB=75;DPRA=0;EPP=33.4109;EPPR=135.47;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=568;QR=2428;RO=61;RPL=0;RPP=33.4109;RPPR=135.47;RPR=14;RUN=1;SAF=14;SAP=33.4109;SAR=0;SRF=61;SRP=135.47;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:36:28,8:28:1127:8:327:-18.963,0,-90.8762 0/1:16:11,5:11:435:5:201:-13.654,0,-34.6837 0/0:23:22,1:22:866:1:40:0,-2.92801,-74.2476 dDocent_Contig_6339 8 . A T 51.7312 . AB=0.230769;ABP=11.1951;AC=1;AF=0.166667;AN=6;AO=7;CIGAR=1X;DP=86;DPB=86;DPRA=0;EPP=18.2106;EPPR=174.557;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=265;QR=2990;RO=79;RPL=0;RPP=18.2106;RPPR=174.557;RPR=7;RUN=1;SAF=7;SAP=18.2106;SAR=0;SRF=79;SRP=174.557;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:34:33,1:33:1250:1:39:0,-6.33846,-108.898 0/1:13:10,3:10:388:3:117:-6.99699,0,-31.3645 0/0:39:36,3:36:1352:3:109:0,-1.5726,-111.796 dDocent_Contig_6340 9 . A C 1433.82 . AB=0.0446429;ABP=406.439;AC=4;AF=0.666667;AN=6;AO=10;CIGAR=1X14M;DP=268;DPB=223.667;DPRA=0;EPP=24.725;EPPR=81.1833;GTI=0;LEN=1;MEANALT=12.5;MQM=41.2;MQMR=60;NS=3;NUMALT=6;ODDS=0;PAIRED=0.6;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=284;QR=1418;RO=36;RPL=0;RPP=24.725;RPPR=81.1833;RPR=10;RUN=1;SAF=10;SAP=24.725;SAR=0;SRF=36;SRP=81.1833;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|1:137:16,16,5,18,52,6,4:16:634:16,5,18,52,6,4:528,94,363,1362,110,52:-88.5964,-54.5816,-101.975,-87.8018,-101.181,-138.502,-71.0128,-84.3933,-117.61,-117.802,0,-13.3876,-46.6109,-29.831,-36.5656,-86.8935,-100.272,-133.489,-116.702,-45.7034,-137.293,-90.9852,-104.364,-137.58,-120.794,-49.7946,-136.672,-141.987 0|1:44:14,6,0,13,7,1,0:14:549:6,0,13,7,1,0:204,0,260,103,22,0:-11.7614,-1.0165,-44.4431,-15.9758,-46.2493,-61.1872,0,-30.2979,-45.2321,-41.3187,-10.5213,-40.802,-55.7371,-39.8057,-53.6299,-14.5665,-44.8415,-59.7794,-43.8261,-54.3302,-59.4784,-15.9758,-46.2493,-61.1872,-45.2321,-55.7371,-59.7794,-61.1872 1|1:87:6,11,20,4,26,6,6:6:235:11,20,4,26,6,6:374,349,80,625,129,232:-48.5329,-22.4252,-38.4511,-30.3039,-21.7299,-43.6186,-45.4223,-36.8459,-44.7257,-63.5531,-8.57548,0,-7.90432,-22.9999,-20.0871,-42.1559,-33.5796,-41.4609,-56.5751,-19.7347,-59.6849,-31.2702,-22.6927,-30.5715,-45.6898,-8.8431,-42.4234,-48.8004 dDocent_Contig_6341 15 . T C 93.6892 . AB=0.122222;ABP=114.576;AC=2;AF=0.333333;AN=6;AO=18;CIGAR=1X;DP=256;DPB=256;DPRA=0;EPP=42.0968;EPPR=519.821;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=720;QR=9583;RO=238;RPL=0;RPP=42.0968;RPPR=519.821;RPR=18;RUN=1;SAF=18;SAP=42.0968;SAR=0;SRF=238;SRP=519.821;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:166:159,7:159:6396:7:285:0,-23.9466,-549.328 0/1:35:29,6:29:1166:6:231:-10.6193,0,-94.6816 0/1:55:50,5:50:2021:5:204:-2.18738,0,-165.519 dDocent_Contig_6342 20 . C G 218.07 . AB=0.193548;ABP=53.5846;AC=2;AF=0.333333;AN=6;AO=12;CIGAR=1X;DP=228;DPB=228;DPRA=0.186747;EPP=29.068;EPPR=472.048;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=3.46945e-18;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=480;QR=8685;RO=216;RPL=0;RPP=29.068;RPPR=472.048;RPR=12;RUN=1;SAF=12;SAP=29.068;SAR=0;SRF=216;SRP=472.048;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:166:166,0:166:6675:0:0:0,-49.971,-600.424 0/1:20:12,8:12:476:8:316:-22.7803,0,-37.1706 0/1:42:38,4:38:1534:4:164:-2.50664,0,-125.652 dDocent_Contig_6343 54 . G A 2773.08 . AB=0.317365;ABP=99.7774;AC=3;AF=0.5;AN=6;AO=106;CIGAR=1X;DP=334;DPB=334;DPRA=0;EPP=233.186;EPPR=495.935;GTI=0;LEN=1;MEANALT=1.33333;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=4250;QR=9089;RO=227;RPL=106;RPP=233.186;RPPR=495.935;RPR=0;RUN=1;SAF=106;SAP=233.186;SAR=0;SRF=227;SRP=495.935;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:202:138,64:138:5538:64:2556:-169.368,0,-437.424 0/1:52:38,14:38:1527:14:563:-35.3588,0,-122.015 0/1:80:51,28:51:2024:28:1131:-78.1035,0,-158.385 dDocent_Contig_6344 131 . G A 86.3976 . AB=0.318182;ABP=9.32731;AC=2;AF=0.333333;AN=6;AO=7;CIGAR=1X;DP=34;DPB=34;DPRA=0.916667;EPP=18.2106;EPPR=61.6401;GTI=0;LEN=1;MEANALT=1;MQM=34.8571;MQMR=58.0741;NS=3;NUMALT=1;ODDS=0;PAIRED=0;PAIREDR=0.888889;PAO=0;PQA=0;PQR=0;PRO=0;QA=234;QR=934;RO=27;RPL=0;RPP=18.2106;RPPR=61.6401;RPR=7;RUN=1;SAF=0;SAP=18.2106;SAR=7;SRF=0;SRP=61.6401;SRR=27;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:11:7,4:7:244:4:139:-7.05329,0,-18.9887 0/1:11:8,3:8:280:3:95:-5.10923,0,-22.2144 0/0:12:12,0:12:410:0:0:0,-3.61236,-35.7661 dDocent_Contig_6345 107 . N G 49.4003 . AB=0;ABP=0;AC=2;AF=1;AN=2;AO=2;CIGAR=1X;DP=2;DPB=2;DPRA=0;EPP=7.35324;EPPR=0;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=0;NS=1;NUMALT=1;ODDS=5.99146;PAIRED=1;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=52;QR=0;RO=0;RPL=0;RPP=7.35324;RPPR=0;RPR=2;RUN=1;SAF=0;SAP=7.35324;SAR=2;SRF=0;SRP=0;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 1/1:2:0,2:0:0:2:52:-4.93894,-0.60206,0 ./.:.:.:.:.:.:.:. ./.:.:.:.:.:.:.:. dDocent_Contig_6346 184 . A T 211.133 . AB=0.36;ABP=7.26639;AC=2;AF=0.333333;AN=6;AO=10;CIGAR=1X;DP=53;DPB=53;DPRA=0;EPP=24.725;EPPR=96.3836;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=391;QR=1662;RO=43;RPL=10;RPP=24.725;RPPR=96.3836;RPR=0;RUN=1;SAF=0;SAP=24.725;SAR=10;SRF=0;SRP=96.3836;SRR=43;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:28:27,1:27:1065:1:40:0,-4.43316,-92.1429 0/1:19:11,8:11:395:8:313:-22.8145,0,-30.1529 0/1:6:5,1:5:202:1:38:-1.99109,0,-16.7553 dDocent_Contig_6347 61 . G A 4459.51 . AB=0.724299;ABP=96.5257;AC=3;AF=0.5;AN=6;AO=155;CIGAR=1X;DP=214;DPB=214;DPRA=0;EPP=339.589;EPPR=128.956;GTI=0;LEN=1;MEANALT=1.33333;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=5725;QR=2152;RO=58;RPL=155;RPP=339.589;RPPR=128.956;RPR=0;RUN=1;SAF=155;SAP=339.589;SAR=0;SRF=58;SRP=128.956;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:103:29,73:29:1080:73:2683:-210.569,0,-66.4075 0/1:74:21,53:21:782:53:2011:-158.946,0,-48.4195 0/1:37:8,29:8:290:29:1031:-81.9585,0,-15.3108 dDocent_Contig_6348 10 . C A 530.781 . AB=0.140625;ABP=74.8046;AC=1;AF=0.166667;AN=6;AO=9;CIGAR=1M1X1M;DP=64;DPB=56.6667;DPRA=0;EPP=22.5536;EPPR=74.6689;GTI=0;LEN=1;MEANALT=2;MQM=60;MQMR=60;NS=3;NUMALT=2;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=348;QR=1313;RO=33;RPL=0;RPP=22.5536;RPPR=74.6689;RPR=9;RUN=1;SAF=9;SAP=22.5536;SAR=0;SRF=33;SRP=74.6689;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|0:31:12,13,6:12:480:13,6:487,239:-36.2557,0,-35.6287,-20.1808,-19.8628,-57.9277 0|0:23:13,8,2:13:515:8,2:296,68:-20.3229,0,-40.0302,-18.7295,-36.9331,-60.5334 0|1:10:8,1,1:8:318:1,1:39,41:-0.985741,-0.198003,-26.0682,0,-22.9838,-25.8878 dDocent_Contig_6349 9 . A G 2837.11 . AB=0.866667;ABP=38.0434;AC=6;AF=1;AN=6;AO=88;CIGAR=1X5M1X1M1X;DP=92;DPB=92;DPRA=0;EPP=194.1;EPPR=0;GTI=0;LEN=1;MEANALT=1.33333;MQM=40;MQMR=0;NS=3;NUMALT=2;ODDS=0;PAIRED=1;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=3294;QR=0;RO=0;RPL=0;RPP=194.1;RPPR=0;RPR=88;RUN=1;SAF=88;SAP=194.1;SAR=0;SRF=0;SRP=0;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 1|1:30:0,4,26:0:0:4,26:158,984:-88.1035,-76.0901,-74.886,-12.3791,0,-4.55232 1|1:31:0,0,31:0:0:0,31:0,1165:-99.4015,-99.4015,-99.4015,-9.33193,-9.33193,0 1|1:31:0,0,31:0:0:0,31:0,1145:-97.728,-97.728,-97.728,-9.33193,-9.33193,0 dDocent_Contig_6350 13 . A C 2085.77 . AB=0.0625;ABP=56.2114;AC=0;AF=0;AN=6;AO=2;CIGAR=1X1M1X3M4I1M2X3M1X;DP=135;DPB=136.231;DPRA=0;EPP=7.35324;EPPR=105.07;GTI=0;LEN=1;MEANALT=4;MQM=42;MQMR=60;NS=3;NUMALT=3;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=79;QR=1836;RO=47;RPL=0;RPP=7.35324;RPPR=105.07;RPR=2;RUN=1;SAF=2;SAP=7.35324;SAR=0;SRF=47;SRP=105.07;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|0:63:15,0,4,39:15:577:0,4,39:0,156,1527:-121.012,-125.527,-172.892,-112.704,-160.069,-158.864,0,-47.3606,-34.5369,-35.6204 0|0:40:18,0,3,17:18:702:0,3,17:0,118,686:-51.1374,-56.5559,-114.253,-46.8505,-104.547,-103.644,0,-57.6994,-47.9924,-52.5819 0|0:32:14,2,0,14:14:557:2,0,14:79,0,560:-41.9503,-40.0084,-85.2724,-46.1647,-85.8745,-92.0313,0,-39.7414,-45.8978,-41.6834 dDocent_Contig_6351 15 . C A 33.434 . AB=0.15;ABP=24.2907;AC=1;AF=0.166667;AN=6;AO=5;CIGAR=1X;DP=67;DPB=67;DPRA=1.73333;EPP=13.8677;EPPR=137.642;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=202;QR=2500;RO=62;RPL=0;RPP=13.8677;RPPR=137.642;RPR=5;RUN=1;SAF=5;SAP=13.8677;SAR=0;SRF=62;SRP=137.642;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:32:30,2:30:1205:2:82:0,-1.85328,-100.945 0/1:20:17,3:17:690:3:120:-5.16709,0,-56.4081 0/0:15:15,0:15:605:0:0:0,-4.51545,-54.7873 dDocent_Contig_6352 9 . A G 270.249 . AB=0.3;ABP=16.9077;AC=2;AF=0.333333;AN=6;AO=12;CIGAR=1X;DP=49;DPB=49;DPRA=2.22222;EPP=29.068;EPPR=83.3548;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=0.833333;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=465;QR=1429;RO=37;RPL=0;RPP=29.068;RPPR=83.3548;RPR=12;RUN=1;SAF=12;SAP=29.068;SAR=0;SRF=37;SRP=83.3548;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:27:19,8:19:735:8:310:-20.1358,0,-58.3531 0/0:9:9,0:9:345:0:0:0,-2.70927,-31.4087 0/1:13:9,4:9:349:4:155:-10.412,0,-27.8575 dDocent_Contig_6353 65 . C T 158.519 . AB=0.208333;ABP=20.744;AC=2;AF=0.333333;AN=6;AO=5;CIGAR=11M1X2M;DP=57;DPB=58.6429;DPRA=0;EPP=13.8677;EPPR=92.0407;GTI=0;LEN=1;MEANALT=1.5;MQM=60;MQMR=60;NS=3;NUMALT=3;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=193;QR=1610;RO=41;RPL=5;RPP=13.8677;RPPR=92.0407;RPR=0;RUN=1;SAF=5;SAP=13.8677;SAR=0;SRF=41;SRP=92.0407;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|0:33:24,3,6,0:24:942:3,6,0:88,214,0:-10.2559,-10.4919,-87.0912,0,-70.5631,-75.7557,-17.4806,-87.9943,-77.5619,-94.9957 0|1:8:6,0,0,2:6:236:0,0,2:0,0,80:-5.18333,-6.98951,-26.3981,-6.98951,-26.3981,-26.3981,0,-19.8065,-19.8065,-19.2044 0|1:16:11,0,2,3:11:432:0,2,3:0,79,113:-5.93522,-9.24655,-44.7845,-2.73865,-38.2832,-37.6811,0,-35.53,-29.0291,-34.627 dDocent_Contig_6357 20 . T C 537.578 . AB=0.204545;ABP=103.095;AC=3;AF=0.5;AN=6;AO=27;CIGAR=1X;DP=132;DPB=132;DPRA=0;EPP=61.6401;EPPR=231.015;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=1088;QR=4121;RO=105;RPL=0;RPP=61.6401;RPPR=231.015;RPR=27;RUN=1;SAF=27;SAP=61.6401;SAR=0;SRF=105;SRP=231.015;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:71:55,16:55:2152:16:641:-36.6514,0,-172.483 0/1:16:13,3:13:513:3:122:-6.55601,0,-41.6995 0/1:45:37,8:37:1456:8:325:-16.0733,0,-117.749 dDocent_Contig_6358 19 . G A 57.5462 . AB=0.173913;ABP=24.253;AC=2;AF=0.333333;AN=6;AO=4;CIGAR=1X;DP=40;DPB=40;DPRA=0.676471;EPP=11.6962;EPPR=81.1833;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=163;QR=1434;RO=36;RPL=0;RPP=11.6962;RPPR=81.1833;RPR=4;RUN=1;SAF=4;SAP=11.6962;SAR=0;SRF=36;SRP=81.1833;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:14:11,3:11:442:3:123:-7.25037,0,-35.9215 0/0:17:17,0:17:684:0:0:0,-5.11751,-61.8906 0/1:9:8,1:8:308:1:40:-1.28641,0,-25.3699 dDocent_Contig_6359 46 . G A 113.312 . AB=0.2;ABP=26.4622;AC=1;AF=0.166667;AN=6;AO=6;CIGAR=1X;DP=62;DPB=62;DPRA=1.875;EPP=16.0391;EPPR=124.613;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=239;QR=2245;RO=56;RPL=0;RPP=16.0391;RPPR=124.613;RPR=6;RUN=1;SAF=6;SAP=16.0391;SAR=0;SRF=56;SRP=124.613;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:30:24,6:24:968:6:239:-12.8541,0,-78.3879 0/0:16:16,0:16:640:0:0:0,-4.81648,-57.934 0/0:16:16,0:16:637:0:0:0,-4.81648,-57.6618 dDocent_Contig_6360 15 . T C 45.4755 . AB=0.1875;ABP=16.582;AC=1;AF=0.166667;AN=6;AO=3;CIGAR=1X;DP=31;DPB=31;DPRA=2.13333;EPP=9.52472;EPPR=63.8115;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=120;QR=1086;RO=28;RPL=0;RPP=9.52472;RPPR=63.8115;RPR=3;RUN=1;SAF=3;SAP=9.52472;SAR=0;SRF=28;SRP=63.8115;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:9:9,0:9:340:0:0:0,-2.70927,-30.9509 0/0:6:6,0:6:235:0:0:0,-1.80618,-21.522 0/1:16:13,3:13:511:3:120:-6.37142,0,-41.5218 dDocent_Contig_6361 27 . A T 891.142 . AB=0.0679012;ABP=265.732;AC=0;AF=0;AN=6;AO=12;CIGAR=1X3M;DP=221;DPB=221;DPRA=0;EPP=29.068;EPPR=356.96;GTI=0;LEN=1;MEANALT=3.33333;MQM=60;MQMR=60;NS=3;NUMALT=3;ODDS=0;PAIRED=0.5;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=485;QR=6373;RO=163;RPL=0;RPP=29.068;RPPR=356.96;RPR=12;RUN=1;SAF=12;SAP=29.068;SAR=0;SRF=163;SRP=356.96;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|0:145:102,1,7,33:102:3975:1,7,33:40,283,1330:-78.9328,-106.343,-432.722,-86.3049,-409.691,-410.879,0,-323.395,-303.357,-316.756 0|0:17:8,0,4,5:8:317:0,4,5:0,161,196:-13.7041,-16.1124,-42.2048,-2.83899,-28.9343,-27.7301,0,-26.0886,-12.8177,-24.5834 0|0:59:53,3,1,2:53:2081:3,1,2:122,41,82:0,-5.893,-176.113,-12.5702,-173.632,-183.395,-9.1856,-170.248,-176.927,-179.71 dDocent_Contig_6362 13 . A C 273.984 . AB=0.276596;ABP=23.3852;AC=3;AF=0.5;AN=6;AO=13;CIGAR=1M3I1X;DP=47;DPB=66.5;DPRA=0;EPP=31.2394;EPPR=74.6689;GTI=0;LEN=1;MEANALT=1.33333;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=3.46945e-18;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=511;QR=1301;RO=33;RPL=0;RPP=31.2394;RPPR=74.6689;RPR=13;RUN=1;SAF=13;SAP=31.2394;SAR=0;SRF=33;SRP=74.6689;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|1:23:17,6:17:676:6:241:-15.143,0,-54.2475 0|1:12:9,2:9:358:2:66:-2.61262,0,-28.9173 0|1:12:7,5:7:267:5:204:-15.1317,0,-20.7745 dDocent_Contig_6363 17 . C A 72.5132 . AB=0.181818;ABP=32.0291;AC=2;AF=0.333333;AN=6;AO=6;CIGAR=1X;DP=43;DPB=43;DPRA=1.65;EPP=16.0391;EPPR=83.3548;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=222;QR=1436;RO=37;RPL=0;RPP=16.0391;RPPR=83.3548;RPR=6;RUN=1;SAF=6;SAP=16.0391;SAR=0;SRF=37;SRP=83.3548;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:19:16,3:16:617:3:111:-4.63435,0,-50.1398 0/0:10:10,0:10:406:0:0:0,-3.0103,-36.9006 0/1:14:11,3:11:413:3:111:-6.1395,0,-33.2977 dDocent_Contig_6365 35 . T C 126.852 . AB=0.285714;ABP=11.386;AC=2;AF=0.333333;AN=6;AO=6;CIGAR=1X2M2X1M1X;DP=55;DPB=55;DPRA=0.308824;EPP=16.0391;EPPR=107.241;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=59.75;NS=3;NUMALT=1;ODDS=0;PAIRED=0;PAIREDR=0.9375;PAO=0;PQA=0;PQR=0;PRO=0;QA=239;QR=1886;RO=48;RPL=0;RPP=16.0391;RPPR=107.241;RPR=6;RUN=1;SAF=6;SAP=16.0391;SAR=0;SRF=48;SRP=107.241;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|0:34:33,0:33:1293:0:0:0,-9.93399,-116.207 0|1:8:7,1:7:273:1:39:-1.48832,0,-22.5288 0|1:13:8,5:8:320:5:200:-14.4667,0,-25.2549 dDocent_Contig_6366 11 . T A 58.6808 . AB=0.116883;ABP=101.178;AC=2;AF=0.333333;AN=6;AO=11;CIGAR=2X3M;DP=107;DPB=107;DPRA=0;EPP=26.8965;EPPR=198.443;GTI=0;LEN=1;MEANALT=1.66667;MQM=60;MQMR=60;NS=3;NUMALT=3;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=419;QR=3514;RO=90;RPL=0;RPP=26.8965;RPPR=198.443;RPR=11;RUN=1;SAF=11;SAP=26.8965;SAR=0;SRF=90;SRP=198.443;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|1:44:33,3,5,3:33:1280:3,5,3:117,187,123:-5.36695,-5.68308,-109.932,0,-95.5242,-103.636,-5.14059,-100.681,-94.9875,-109.395 0|0:30:28,0,2,0:28:1098:0,2,0:0,81,0:0,-8.42884,-98.7097,-1.34517,-92.0297,-91.4276,-8.42884,-98.7097,-92.0297,-98.7097 0|1:33:29,0,4,0:29:1136:0,4,0:0,151,0:-4.0225,-12.7524,-106.172,0,-93.7988,-92.5946,-12.7524,-106.172,-93.7988,-106.172 dDocent_Contig_6368 20 . G T 501.071 . AB=0.26087;ABP=48.7056;AC=2;AF=0.333333;AN=6;AO=24;CIGAR=1X;DP=121;DPB=121;DPRA=1.58621;EPP=55.1256;EPPR=213.643;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=896;QR=3819;RO=97;RPL=0;RPP=55.1256;RPPR=213.643;RPR=24;RUN=1;SAF=24;SAP=55.1256;SAR=0;SRF=97;SRP=213.643;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:45:33,12:33:1293:12:451:-27.3894,0,-103.08 0/0:29:29,0:29:1137:0:0:0,-8.72987,-102.613 0/1:47:35,12:35:1389:12:445:-26.2406,0,-111.112 dDocent_Contig_6369 10 . A G 1074.91 . AB=0.212851;ABP=181.341;AC=2;AF=0.333333;AN=6;AO=57;CIGAR=1M1X3M;DP=349;DPB=349;DPRA=0;EPP=126.784;EPPR=558.907;GTI=0;LEN=1;MEANALT=3.66667;MQM=45.5965;MQMR=60;NS=3;NUMALT=3;ODDS=0;PAIRED=1;PAIREDR=0.917969;PAO=0;PQA=0;PQR=0;PRO=0;QA=2221;QR=10027;RO=256;RPL=0;RPP=126.784;RPPR=558.907;RPR=57;RUN=1;SAF=57;SAP=126.784;SAR=0;SRF=256;SRP=558.907;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|1:177:124,6,39,3:124:4891:6,39,3:233,1520,117:-82.4778,-100.66,-501.288,0,-383.283,-390.687,-110.187,-493.477,-392.81,-511.719 0|1:72:52,3,14,3:52:2043:3,14,3:120,549,116:-28.5357,-34.3017,-201.443,0,-158.152,-163.823,-34.6611,-192.818,-158.51,-201.8 0|0:100:80,7,4,7:80:3093:7,4,7:274,152,273:0,-1.55127,-253.475,-11.8544,-243.351,-264.677,-1.64062,-233.141,-243.44,-253.564 dDocent_Contig_6370 126 . C G 41.9736 . AB=0.173913;ABP=24.253;AC=1;AF=0.166667;AN=6;AO=10;CIGAR=1X;DP=156;DPB=156;DPRA=0;EPP=24.725;EPPR=320.045;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=350;QR=5031;RO=146;RPL=0;RPP=24.725;RPPR=320.045;RPR=10;RUN=1;SAF=0;SAP=24.725;SAR=10;SRF=0;SRP=320.045;SRR=146;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:83:78,5:78:2677:5:175:0,-8.89179,-225.091 0/1:23:19,4:19:661:4:140:-6.02124,0,-52.8916 0/0:50:49,1:49:1693:1:35:0,-11.5529,-149.16 dDocent_Contig_6371 60 . T A 294.981 . AB=0.325;ABP=13.6505;AC=1;AF=0.166667;AN=6;AO=13;CIGAR=1X;DP=125;DPB=125;DPRA=0.941176;EPP=31.2394;EPPR=246.215;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=0;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=478;QR=4005;RO=112;RPL=13;RPP=31.2394;RPPR=246.215;RPR=0;RUN=1;SAF=13;SAP=31.2394;SAR=0;SRF=112;SRP=246.215;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:57:57,0:57:2102:0:0:0,-17.1587,-189.416 0/0:28:28,0:28:993:0:0:0,-8.42884,-89.6729 0/1:40:27,13:27:910:13:478:-31.322,0,-70.1629 dDocent_Contig_6372 15 . C A 3770.12 . AB=0.0393701;ABP=471.125;AC=0;AF=0;AN=6;AO=10;CIGAR=2X2M1X;DP=349;DPB=349;DPRA=0;EPP=24.725;EPPR=430.79;GTI=0;LEN=1;MEANALT=4;MQM=60;MQMR=60;NS=3;NUMALT=2;ODDS=2.77556e-17;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=390;QR=7821;RO=197;RPL=0;RPP=24.725;RPPR=430.79;RPR=10;RUN=1;SAF=10;SAP=24.725;SAR=0;SRF=197;SRP=430.79;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|0:164:87,3,73:87:3433:3,73:118,2963:-218.18,-234.663,-516.205,0,-272.742,-260.473 0|0:95:58,0,33:58:2327:0,33:0,1314:-90.8671,-108.327,-300.072,0,-191.873,-181.939 0|0:90:52,7,27:52:2061:7,27:272,1082:-73.4886,-66.7945,-234.317,0,-147.289,-161.51 dDocent_Contig_6373 98 . N T 5192.55 . AB=0;ABP=0;AC=6;AF=1;AN=6;AO=171;CIGAR=2X;DP=171;DPB=171;DPRA=0;EPP=374.332;EPPR=0;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=0;NS=3;NUMALT=1;ODDS=1.69407e-21;PAIRED=1;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=5755;QR=0;RO=0;RPL=171;RPP=374.332;RPPR=0;RPR=0;RUN=1;SAF=171;SAP=374.332;SAR=0;SRF=0;SRP=0;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 1|1:66:0,66:0:0:66:2190:-197.363,-19.868,0 1|1:32:0,32:0:0:32:1081:-97.5939,-9.63296,0 1|1:73:0,73:0:0:73:2484:-223.821,-21.9752,0 dDocent_Contig_6374 20 . A T 304.675 . AB=0.413793;ABP=4.88226;AC=1;AF=0.166667;AN=6;AO=17;CIGAR=1X;DP=138;DPB=138;DPRA=2.95;EPP=39.9253;EPPR=265.758;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=6.93889e-18;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=646;QR=4795;RO=121;RPL=0;RPP=39.9253;RPPR=265.758;RPR=17;RUN=1;SAF=17;SAP=39.9253;SAR=0;SRF=121;SRP=265.758;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:89:84,5:84:3330:5:194:0,-8.95953,-281.919 0/0:20:20,0:20:797:0:0:0,-6.0206,-72.0483 0/1:29:17,12:17:668:12:452:-32.2914,0,-51.7191 dDocent_Contig_6375 28 . C T 62.6089 . AB=0.3;ABP=6.48466;AC=1;AF=0.166667;AN=6;AO=5;CIGAR=1X;DP=55;DPB=55;DPRA=1.11765;EPP=13.8677;EPPR=111.584;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=195;QR=1972;RO=50;RPL=0;RPP=13.8677;RPPR=111.584;RPR=5;RUN=1;SAF=5;SAP=13.8677;SAR=0;SRF=50;SRP=111.584;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:28:26,2:26:1043:2:76:0,-1.21458,-86.9471 0/1:10:7,3:7:262:3:119:-8.08471,0,-20.9166 0/0:17:17,0:17:667:0:0:0,-5.11751,-60.3563 dDocent_Contig_6378 51 . C T 112.414 . AB=0.0606061;ABP=113.69;AC=0;AF=0;AN=6;AO=4;CIGAR=2M1X7M;DP=115;DPB=103.8;DPRA=4.4;EPP=11.6962;EPPR=211.472;GTI=0;LEN=1;MEANALT=3;MQM=60;MQMR=60;NS=3;NUMALT=2;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=153;QR=3752;RO=96;RPL=4;RPP=11.6962;RPPR=211.472;RPR=0;RUN=1;SAF=4;SAP=11.6962;SAR=0;SRF=96;SRP=211.472;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|0:66:52,9,4:52:2013:9,4:320,153:-10.3981,0,-162.645,-13.4944,-152.803,-177.666 0|0:15:14,1,0:14:556:1,0:34,0:0,-1.11654,-46.9864,-4.21442,-47.2874,-50.0416 0|0:34:30,4,0:30:1183:4,0:158,0:-4.36546,0,-96.5212,-13.3964,-97.7253,-110.727 dDocent_Contig_6379 18 . A G 438.053 . AB=0.25;ABP=44.2683;AC=2;AF=0.333333;AN=6;AO=19;CIGAR=1X;DP=82;DPB=82;DPRA=6.33333;EPP=44.2683;EPPR=139.813;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=772;QR=2519;RO=63;RPL=0;RPP=44.2683;RPPR=139.813;RPR=19;RUN=1;SAF=19;SAP=44.2683;SAR=0;SRF=63;SRP=139.813;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:43:36,7:36:1453:7:286:-13.1705,0,-118.074 0/0:6:6,0:6:240:0:0:0,-1.80618,-21.9757 0/1:33:21,12:21:826:12:486:-34.1576,0,-64.7126 dDocent_Contig_6380 9 . A T 4116.61 . AB=0.0373134;ABP=501.347;AC=0;AF=0;AN=6;AO=10;CIGAR=1X3M2X;DP=309;DPB=309;DPRA=0;EPP=24.725;EPPR=341.76;GTI=0;LEN=1;MEANALT=2.5;MQM=60;MQMR=59.6154;NS=3;NUMALT=2;ODDS=2.77556e-17;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=396;QR=6126;RO=156;RPL=0;RPP=24.725;RPPR=341.76;RPR=10;RUN=1;SAF=10;SAP=24.725;SAR=0;SRF=156;SRP=341.76;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|0:195:101,2,91:101:3950:2,91:80,3614:-267.074,-290.887,-614.274,0,-317.392,-296.589 0|0:41:15,0,25:15:590:0,25:0,1002:-78.2536,-82.769,-131.303,0,-48.7426,-41.2168 0|0:73:40,8,25:40:1586:8,25:316,1017:-71.8565,-57.8972,-186.033,0,-104.549,-123.026 dDocent_Contig_6381 17 . T C 69.4968 . AB=0.16129;ABP=33.9012;AC=1;AF=0.166667;AN=6;AO=10;CIGAR=1X;DP=166;DPB=166;DPRA=1.74324;EPP=24.725;EPPR=341.76;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=400;QR=6202;RO=156;RPL=0;RPP=24.725;RPPR=341.76;RPR=10;RUN=1;SAF=10;SAP=24.725;SAR=0;SRF=156;SRP=341.76;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:98:93,5:93:3678:5:203:0,-10.8479,-312.387 0/0:37:37,0:37:1477:0:0:0,-11.1381,-133.181 0/1:31:26,5:26:1047:5:197:-8.77359,0,-85.1905 dDocent_Contig_6382 18 . T C 1461.44 . AB=0.362416;ABP=27.5086;AC=2;AF=0.333333;AN=6;AO=58;CIGAR=1X;DP=212;DPB=212;DPRA=0;EPP=128.956;EPPR=337.417;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=2317;QR=6129;RO=154;RPL=0;RPP=128.956;RPPR=337.417;RPR=58;RUN=1;SAF=58;SAP=128.956;SAR=0;SRF=154;SRP=337.417;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:109:67,42:67:2646:42:1681:-118.701,0,-205.452 0/1:40:28,12:28:1127:12:474:-30.966,0,-89.6732 0/0:63:59,4:59:2356:4:162:0,-3.99814,-197.23 dDocent_Contig_6383 1 . N G 104.331 . AB=0;ABP=0;AC=2;AF=1;AN=2;AO=3;CIGAR=1X;DP=3;DPB=3;DPRA=0;EPP=9.52472;EPPR=0;GTI=0;LEN=1;MEANALT=1;MQM=55;MQMR=0;NS=1;NUMALT=1;ODDS=6.68461;PAIRED=1;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=112;QR=0;RO=0;RPL=0;RPP=9.52472;RPPR=0;RPR=3;RUN=1;SAF=3;SAP=9.52472;SAR=0;SRF=0;SRP=0;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 1/1:3:0,3:0:0:3:112:-10.4326,-0.90309,0 ./.:.:.:.:.:.:.:. ./.:.:.:.:.:.:.:. dDocent_Contig_6385 14 . A G 1526.68 . AB=0.424242;ABP=9.59052;AC=3;AF=0.5;AN=6;AO=56;CIGAR=1X;DP=132;DPB=132;DPRA=0;EPP=124.613;EPPR=168.042;GTI=0;LEN=1;MEANALT=1;MQM=49.5357;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=2239;QR=3057;RO=76;RPL=0;RPP=124.613;RPPR=168.042;RPR=56;RUN=1;SAF=56;SAP=124.613;SAR=0;SRF=76;SRP=168.042;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:66:46,20:46:1846:20:791:-49.7878,0,-146.471 0/1:21:10,11:10:405:11:447:-34.0702,0,-30.4879 0/1:45:20,25:20:806:25:1001:-74.3328,0,-59.3066 dDocent_Contig_6386 54 . A G 1258.45 . AB=0.275132;ABP=86.0203;AC=3;AF=0.5;AN=6;AO=52;CIGAR=1X;DP=189;DPB=189;DPRA=0;EPP=115.927;EPPR=298.331;GTI=0;LEN=1;MEANALT=1.33333;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=2082;QR=5255;RO=136;RPL=52;RPP=115.927;RPPR=298.331;RPR=0;RUN=1;SAF=52;SAP=115.927;SAR=0;SRF=136;SRP=298.331;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:95:78,17:78:3040:17:677:-32.6601,0,-245.107 0/1:30:14,15:14:529:15:608:-45.9285,0,-38.8192 0/1:64:44,20:44:1686:20:797:-52.7795,0,-132.703 dDocent_Contig_6387 177 . A C 694.549 . AB=0.38806;ABP=10.3026;AC=3;AF=0.5;AN=6;AO=26;CIGAR=1X;DP=67;DPB=67;DPRA=0;EPP=59.4686;EPPR=92.0407;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=1045;QR=1576;RO=41;RPL=26;RPP=59.4686;RPPR=92.0407;RPR=0;RUN=1;SAF=0;SAP=59.4686;SAR=26;SRF=0;SRP=92.0407;SRR=41;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:24:17,7:17:617:7:285:-18.7997,0,-48.6202 0/1:19:13,6:13:524:6:239:-16.1654,0,-41.7877 0/1:24:11,13:11:435:13:521:-40.0127,0,-32.2784 dDocent_Contig_6389 17 . T A 452.47 . AB=0.20354;ABP=89.2735;AC=1;AF=0.166667;AN=6;AO=27;CIGAR=2X;DP=268;DPB=268;DPRA=1.56154;EPP=61.6401;EPPR=521.992;GTI=0;LEN=1;MEANALT=1.5;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=1047;QR=8859;RO=239;RPL=0;RPP=61.6401;RPPR=521.992;RPR=27;RUN=1;SAF=27;SAP=61.6401;SAR=0;SRF=239;SRP=521.992;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|1:113:89,23:89:3264:23:892:-46.7699,0,-260.101 0|0:90:86,4:86:3186:4:155:0,-12.7673,-272.584 0|0:65:64,0:64:2409:0:0:0,-19.2659,-216.635 dDocent_Contig_6390 58 . A T 160.988 . AB=0.18;ABP=47.4821;AC=1;AF=0.166667;AN=6;AO=9;CIGAR=1X;DP=69;DPB=69;DPRA=5.26316;EPP=22.5536;EPPR=133.299;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=359;QR=2342;RO=60;RPL=9;RPP=22.5536;RPPR=133.299;RPR=0;RUN=1;SAF=9;SAP=22.5536;SAR=0;SRF=60;SRP=133.299;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:50:41,9:41:1603:9:359:-17.6216,0,-129.451 0/0:6:6,0:6:216:0:0:0,-1.80618,-19.7781 0/0:13:13,0:13:523:0:0:0,-3.91339,-47.4171 dDocent_Contig_6393 107 . N T 229.842 . AB=0;ABP=0;AC=4;AF=1;AN=4;AO=8;CIGAR=1X;DP=8;DPB=8;DPRA=0;EPP=20.3821;EPPR=0;GTI=0;LEN=1;MEANALT=1;MQM=33.375;MQMR=0;NS=2;NUMALT=1;ODDS=0;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=278;QR=0;RO=0;RPL=0;RPP=20.3821;RPPR=0;RPR=8;RUN=1;SAF=0;SAP=20.3821;SAR=8;SRF=0;SRP=0;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 1/1:4:0,4:0:0:4:139:-11.9566,-1.20412,0 1/1:4:0,4:0:0:4:139:-10.7263,-1.20412,0 ./.:.:.:.:.:.:.:. dDocent_Contig_6394 25 . T C 2488.47 . AB=0.61194;ABP=17.5948;AC=3;AF=0.5;AN=6;AO=82;CIGAR=1X;DP=134;DPB=134;DPRA=0;EPP=181.071;EPPR=115.927;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=3265;QR=2104;RO=52;RPL=0;RPP=181.071;RPPR=115.927;RPR=82;RUN=1;SAF=82;SAP=181.071;SAR=0;SRF=52;SRP=115.927;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:58:26,32:26:1059:32:1266:-96.7506,0,-78.1365 0/1:34:14,20:14:559:20:794:-61.5401,0,-40.4177 0/1:42:12,30:12:486:30:1205:-96.0788,0,-31.448 dDocent_Contig_6396 86 . G A 3280.91 . AB=0.264423;ABP=303.801;AC=3;AF=0.5;AN=6;AO=165;CIGAR=1X;DP=624;DPB=624;DPRA=0;EPP=361.303;EPPR=967.144;GTI=0;LEN=1;MEANALT=2;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=5746;QR=15396;RO=444;RPL=165;RPP=361.303;RPPR=967.144;RPR=0;RUN=1;SAF=165;SAP=361.303;SAR=0;SRF=444;SRP=967.144;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:344:254,81:254:8871:81:2855:-156.018,0,-697.228 0/1:111:74,34:74:2551:34:1168:-72.5543,0,-196.968 0/1:169:116,50:116:3974:50:1723:-105.041,0,-307.553 dDocent_Contig_6398 8 . A T 1215.78 . AB=0.382114;ABP=17.8575;AC=3;AF=0.5;AN=6;AO=47;CIGAR=1X;DP=123;DPB=123;DPRA=0;EPP=105.07;EPPR=168.042;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=1809;QR=2887;RO=76;RPL=0;RPP=105.07;RPPR=168.042;RPR=47;RUN=1;SAF=47;SAP=105.07;SAR=0;SRF=76;SRP=168.042;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:97:61,36:61:2313:36:1382:-95.4618,0,-179.184 0/1:7:6,1:6:229:1:39:-1.78935,0,-18.8685 0/1:19:9,10:9:345:10:388:-29.5584,0,-25.6892 dDocent_Contig_6399 36 . T A 2547.56 . AB=0.33;ABP=78.317;AC=3;AF=0.5;AN=6;AO=99;CIGAR=1X;DP=300;DPB=300;DPRA=0;EPP=217.986;EPPR=432.962;GTI=0;LEN=1;MEANALT=1.33333;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=0.858586;PAIREDR=0.853535;PAO=0;PQA=0;PQR=0;PRO=0;QA=3881;QR=7779;RO=198;RPL=0;RPP=217.986;RPPR=432.962;RPR=99;RUN=1;SAF=99;SAP=217.986;SAR=0;SRF=198;SRP=432.962;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:147:95,52:95:3736:52:2029:-138.551,0,-292.044 0/1:73:49,24:49:1929:24:931:-62.1164,0,-151.851 0/1:80:54,23:54:2114:23:921:-59.6118,0,-166.881 dDocent_Contig_6401 11 . T C 6422.98 . AB=0.8;ABP=112.453;AC=4;AF=0.666667;AN=6;AO=198;CIGAR=1X;DP=233;DPB=233;DPRA=0;EPP=432.962;EPPR=79.0118;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=7928;QR=1413;RO=35;RPL=0;RPP=432.962;RPPR=79.0118;RPR=198;RUN=1;SAF=198;SAP=432.962;SAR=0;SRF=35;SRP=79.0118;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 1/1:93:7,86:7:284:86:3434:-283.168,-2.06238,0 0/1:52:5,47:5:204:47:1900:-155.544,0,-3.09047 0/1:88:23,65:23:925:65:2594:-207.097,0,-57.0605 dDocent_Contig_6402 1 . N G 65.5375 . AB=0;ABP=0;AC=2;AF=1;AN=2;AO=2;CIGAR=1X;DP=2;DPB=2;DPRA=0;EPP=7.35324;EPPR=0;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=0;NS=1;NUMALT=1;ODDS=5.99146;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=69;QR=0;RO=0;RPL=0;RPP=7.35324;RPPR=0;RPR=2;RUN=1;SAF=0;SAP=7.35324;SAR=2;SRF=0;SRP=0;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 1/1:2:0,2:0:0:2:69:-6.55266,-0.60206,0 ./.:.:.:.:.:.:.:. ./.:.:.:.:.:.:.:. dDocent_Contig_6404 27 . G T 179.731 . AB=0.153846;ABP=84.19;AC=1;AF=0.166667;AN=6;AO=26;CIGAR=1X;DP=260;DPB=260;DPRA=0;EPP=59.4686;EPPR=511.135;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=1035;QR=9184;RO=234;RPL=0;RPP=59.4686;RPPR=511.135;RPR=26;RUN=1;SAF=26;SAP=59.4686;SAR=0;SRF=234;SRP=511.135;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:101:93,8:93:3677:8:324:0,-0.87463,-301.432 0/0:81:75,6:75:2974:6:234:0,-2.95502,-246.345 0/1:78:66,12:66:2533:12:477:-19.7969,0,-204.639 dDocent_Contig_6405 18 . G A 161.269 . AB=0.1875;ABP=43.7254;AC=1;AF=0.166667;AN=6;AO=19;CIGAR=1M1I2M1X;DP=223;DPB=227.75;DPRA=0;EPP=44.2683;EPPR=443.819;GTI=0;LEN=1;MEANALT=1.33333;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=760;QR=8138;RO=203;RPL=0;RPP=44.2683;RPPR=443.819;RPR=19;RUN=1;SAF=19;SAP=44.2683;SAR=0;SRF=203;SRP=443.819;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|0:145:136,9:136:5472:9:364:0,-10.5244,-459.183 0|0:30:28,1:28:1113:1:40:0,-4.98397,-96.5991 0|1:48:39,9:39:1553:9:356:-17.9508,0,-125.564 dDocent_Contig_6406 50 . C T 182.668 . AB=0.134454;ABP=141.127;AC=2;AF=0.333333;AN=6;AO=16;CIGAR=1X;DP=228;DPB=228;DPRA=0.545872;EPP=37.7539;EPPR=463.362;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=632;QR=8367;RO=212;RPL=16;RPP=37.7539;RPPR=463.362;RPR=0;RUN=1;SAF=16;SAP=37.7539;SAR=0;SRF=212;SRP=463.362;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:109:109,0:109:4300:0:0:0,-32.8123,-386.965 0/1:49:44,5:44:1739:5:202:-3.8114,0,-141.981 0/1:70:59,11:59:2328:11:430:-17.976,0,-188.61 dDocent_Contig_6408 15 . A G 153.852 . AB=0.169492;ABP=58.9901;AC=2;AF=0.333333;AN=6;AO=10;CIGAR=1X;DP=85;DPB=85;DPRA=1.13462;EPP=24.725;EPPR=165.871;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=399;QR=3018;RO=75;RPL=0;RPP=24.725;RPPR=165.871;RPR=10;RUN=1;SAF=10;SAP=24.725;SAR=0;SRF=75;SRP=165.871;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:43:36,7:36:1448:7:276:-12.2598,0,-117.625 0/0:26:26,0:26:1047:0:0:0,-7.82678,-94.5208 0/1:16:13,3:13:523:3:123:-6.64831,0,-42.5996 dDocent_Contig_6409 66 . G A 225.223 . AB=0.266667;ABP=24.2907;AC=1;AF=0.166667;AN=6;AO=13;CIGAR=1X;DP=70;DPB=70;DPRA=2.68182;EPP=31.2394;EPPR=126.784;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=448;QR=1935;RO=57;RPL=13;RPP=31.2394;RPPR=126.784;RPR=0;RUN=1;SAF=13;SAP=31.2394;SAR=0;SRF=57;SRP=126.784;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:45:33,12:33:1103:12:414:-24.045,0,-86.0232 0/0:11:11,0:11:379:0:0:0,-3.31133,-34.4422 0/0:14:13,1:13:453:1:34:0,-0.815509,-37.7038 dDocent_Contig_6410 23 . G A 4723.04 . AB=0.343284;ABP=117.353;AC=3;AF=0.5;AN=6;AO=184;CIGAR=1X1M2X;DP=536;DPB=536;DPRA=0;EPP=254.571;EPPR=574.108;GTI=0;LEN=1;MEANALT=3.33333;MQM=54.0163;MQMR=60;NS=3;NUMALT=2;ODDS=1.11022e-16;PAIRED=0.815217;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=7124;QR=9998;RO=263;RPL=0;RPP=402.561;RPPR=574.108;RPR=184;RUN=1;SAF=165;SAP=254.571;SAR=19;SRF=263;SRP=574.108;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|1:310:165,39,101:165:6237:39,101:1513,3928:-265.588,-191.255,-690.708,0,-387.184,-480.783 0|1:111:45,24,40:45:1709:24,40:849,1518:-91.2409,-36.7306,-169.661,0,-72.1077,-128.105 0|1:115:53,19,43:53:2052:19,43:752,1678:-120.998,-75.0697,-237.914,0,-106.676,-155.614 dDocent_Contig_6412 15 . G T 2471.28 . AB=0.0606061;ABP=224.369;AC=0;AF=0;AN=6;AO=8;CIGAR=1X5M1X;DP=132;DPB=132;DPRA=0;EPP=20.3821;EPPR=68.1545;GTI=0;LEN=1;MEANALT=2.66667;MQM=27.5;MQMR=60;NS=3;NUMALT=4;ODDS=0;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=220;QR=1164;RO=30;RPL=0;RPP=20.3821;RPPR=68.1545;RPR=8;RUN=1;SAF=8;SAP=20.3821;SAR=0;SRF=30;SRP=68.1545;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|0:62:14,0,1,47,0:14:541:0,1,47,0:0,31,1859,0:-141.26,-145.474,-189.907,-143.258,-187.691,-187.39,0,-44.5297,-42.3186,-30.3813,-145.474,-189.907,-187.691,-44.5297,-189.907 0|0:33:7,0,5,17,4:7:274:0,5,17,4:0,127,671,159:-46.8821,-48.9894,-71.5322,-40.4409,-62.9799,-61.4747,0,-22.5769,-14.0518,-17.4594,-37.3203,-59.8663,-51.317,-10.904,-58.6622 0|0:37:9,3,2,23,0:9:349:3,2,23,0:117,62,917,0:-64.509,-63.2894,-91.0694,-62.786,-87.5411,-90.8703,0,-24.8744,-24.3528,-21.8576,-67.2183,-91.9725,-91.4724,-28.7813,-95.905 dDocent_Contig_6415 36 . G A 106.631 . AB=0.16;ABP=53.2147;AC=2;AF=0.333333;AN=6;AO=8;CIGAR=1X;DP=63;DPB=63;DPRA=1.92308;EPP=20.3821;EPPR=122.441;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=3.46945e-18;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=316;QR=2198;RO=55;RPL=0;RPP=20.3821;RPPR=122.441;RPR=8;RUN=1;SAF=8;SAP=20.3821;SAR=0;SRF=55;SRP=122.441;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:40:36,4:36:1442:4:158:-2.5587,0,-117.989 0/0:13:13,0:13:523:0:0:0,-3.91339,-47.4173 0/1:10:6,4:6:233:4:158:-11.5891,0,-18.3283 dDocent_Contig_6417 98 . N T 732.688 . AB=0;ABP=0;AC=6;AF=1;AN=6;AO=24;CIGAR=1X;DP=24;DPB=24;DPRA=0;EPP=55.1256;EPPR=0;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=0;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=797;QR=0;RO=0;RPL=24;RPP=55.1256;RPPR=0;RPR=0;RUN=1;SAF=24;SAP=55.1256;SAR=0;SRF=0;SRP=0;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 1/1:12:0,12:0:0:12:400:-36.3222,-3.61236,0 1/1:1:0,1:0:0:1:29:-2.89966,-0.30103,0 1/1:11:0,11:0:0:11:368:-33.4442,-3.31133,0 dDocent_Contig_6418 47 . T A 251.685 . AB=0.333333;ABP=9.52472;AC=3;AF=0.5;AN=6;AO=9;CIGAR=1X4M;DP=39;DPB=39;DPRA=0;EPP=14.8328;EPPR=59.4686;GTI=0;LEN=1;MEANALT=1.5;MQM=60;MQMR=60;NS=3;NUMALT=2;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=341;QR=1002;RO=26;RPL=1;RPP=14.8328;RPPR=59.4686;RPR=8;RUN=1;SAF=9;SAP=22.5536;SAR=0;SRF=26;SRP=59.4686;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|1:14:8,1,5:8:306:1,5:39,186:-12.7973,-11.9967,-36.8043,0,-21.8888,-23.5904 0|1:12:9,3,0:9:349:3,0:119,0:-7.48303,0,-28.1538,-10.1923,-29.0568,-38.8551 0|1:13:9,0,4:9:347:0,4:0,155:-10.411,-13.1202,-41.6116,0,-28.8779,-27.6738 dDocent_Contig_6419 157 . A G 643.456 . AB=0.153846;ABP=16.5402;AC=0;AF=0;AN=6;AO=2;CIGAR=3M1X1M1X1M1X1M10I1M1X;DP=65;DPB=105;DPRA=0.928571;EPP=7.35324;EPPR=72.4974;GTI=0;LEN=1;MEANALT=3;MQM=60;MQMR=60;NS=3;NUMALT=2;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=71;QR=1108;RO=32;RPL=0;RPP=7.35324;RPPR=72.4974;RPR=2;RUN=1;SAF=0;SAP=7.35324;SAR=2;SRF=0;SRP=72.4974;SRR=32;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|0:38:12,0,25:12:423:0,25:0,809:-61.7991,-65.4115,-99.864,0,-34.6099,-27.0841 0|0:13:7,2,3:7:226:2,3:71,101:-6.06865,-2.38572,-19.999,0,-12.4141,-17.3019 0|0:14:13,0,1:13:459:0,1:0,30:0,-3.91339,-41.3412,-1.21485,-38.9464,-38.6454 dDocent_Contig_6420 13 . A G 998.493 . AB=0.194757;ABP=219.092;AC=3;AF=0.5;AN=6;AO=52;CIGAR=1X;DP=267;DPB=267;DPRA=0;EPP=115.927;EPPR=469.877;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=2053;QR=8380;RO=215;RPL=0;RPP=115.927;RPPR=469.877;RPR=52;RUN=1;SAF=52;SAP=115.927;SAR=0;SRF=215;SRP=469.877;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:180:149,31:149:5812:31:1224:-56.2335,0,-468.708 0/1:17:14,3:14:559:3:122:-6.25498,0,-45.534 0/1:70:52,18:52:2009:18:707:-42.8836,0,-159.93 dDocent_Contig_6421 21 . C T 204.802 . AB=0.103679;ABP=410.935;AC=2;AF=0.333333;AN=6;AO=59;CIGAR=1X;DP=738;DPB=738;DPRA=0;EPP=131.127;EPPR=1442.7;GTI=0;LEN=1;MEANALT=2;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=0.998492;PAO=0;PQA=0;PQR=0;PRO=0;QA=2362;QR=26498;RO=663;RPL=0;RPP=131.127;RPPR=1442.7;RPR=59;RUN=1;SAF=59;SAP=131.127;SAR=0;SRF=663;SRP=1442.7;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:439:402,28:402:16058:28:1117:0,-29.0342,-1343.09 0/1:91:81,8:81:3248:8:318:-1.79103,0,-265.185 0/1:208:180,23:180:7192:23:927:-22.2228,0,-585.42 dDocent_Contig_6422 34 . A G 71.2843 . AB=0.0769231;ABP=83.8559;AC=1;AF=0.166667;AN=6;AO=4;CIGAR=2M1X;DP=135;DPB=164.333;DPRA=0.313253;EPP=11.6962;EPPR=263.587;GTI=0;LEN=1;MEANALT=1.5;MQM=60;MQMR=60;NS=3;NUMALT=2;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=164;QR=4807;RO=120;RPL=0;RPP=11.6962;RPPR=263.587;RPR=4;RUN=1;SAF=4;SAP=11.6962;SAR=0;SRF=120;SRP=263.587;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|0:83:76,7,0:76:3049:7,0:224,0:0,-4.5192,-254.029,-22.8783,-256.136,-274.169 0|0:16:11,4,1:11:440:4,1:150,41:-8.94624,0,-35.0314,-8.86654,-32.8506,-44.8284 0|1:36:33,0,3:33:1318:0,3:0,123:-0.627708,-10.5617,-119.107,0,-108.953,-108.05 dDocent_Contig_6423 47 . G A 537.428 . AB=0.201493;ABP=106.722;AC=3;AF=0.5;AN=6;AO=27;CIGAR=1M1X3M;DP=134;DPB=133.4;DPRA=0;EPP=61.6401;EPPR=228.843;GTI=0;LEN=1;MEANALT=1.33333;MQM=60;MQMR=60;NS=3;NUMALT=2;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=1089;QR=4048;RO=104;RPL=0;RPP=61.6401;RPPR=228.843;RPR=27;RUN=1;SAF=27;SAP=61.6401;SAR=0;SRF=104;SRP=228.843;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|1:74:61,0,13:61:2365:0,13:0,524:-25.2313,-43.5941,-237.869,0,-194.674,-190.761 0|1:29:22,3,4:22:864:3,4:121,161:-6.64561,-3.29367,-73.4426,0,-61.0754,-69.8468 0|1:31:21,0,10:21:819:0,10:0,404:-27.3887,-33.7103,-101.017,0,-67.7062,-64.6959 dDocent_Contig_6424 202 . C T 119.128 . AB=0.18;ABP=47.4821;AC=2;AF=0.333333;AN=6;AO=10;CIGAR=1X;DP=74;DPB=74;DPRA=0;EPP=24.725;EPPR=141.985;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=346;QR=2197;RO=64;RPL=10;RPP=24.725;RPPR=141.985;RPR=0;RUN=1;SAF=0;SAP=24.725;SAR=10;SRF=0;SRP=141.985;SRR=64;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:31:24,7:24:816:7:249:-13.4235,0,-64.4177 0/1:19:17,2:17:558:2:70:-0.927826,0,-44.8095 0/0:24:23,1:23:823:1:27:0,-4.52494,-71.693 dDocent_Contig_6425 13 . T C 103.529 . AB=0.148936;ABP=53.3238;AC=1;AF=0.166667;AN=6;AO=12;CIGAR=1X;DP=139;DPB=139;DPRA=2.80952;EPP=29.068;EPPR=278.787;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=487;QR=5089;RO=127;RPL=0;RPP=29.068;RPPR=278.787;RPR=12;RUN=1;SAF=12;SAP=29.068;SAR=0;SRF=127;SRP=278.787;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:47:40,7:40:1598:7:285:-11.8758,0,-129.898 0/0:21:21,0:21:843:0:0:0,-6.32163,-76.181 0/0:71:66,5:66:2648:5:202:0,-2.81105,-219.885 dDocent_Contig_6426 34 . T C 978.545 . AB=0.304688;ABP=45.4219;AC=2;AF=0.333333;AN=6;AO=39;CIGAR=1X;DP=149;DPB=149;DPRA=3.04762;EPP=87.6977;EPPR=239.701;GTI=0;LEN=1;MEANALT=1.5;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=0.948718;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=1548;QR=4276;RO=109;RPL=0;RPP=87.6977;RPPR=239.701;RPR=39;RUN=1;SAF=39;SAP=87.6977;SAR=0;SRF=109;SRP=239.701;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:85:63,22:63:2511:22:879:-53.8337,0,-200.556 0/0:21:21,0:21:797:0:0:0,-6.32163,-72.0457 0/1:43:25,17:25:968:17:669:-47.5437,0,-74.4237 dDocent_Contig_6427 16 . G A 2654.32 . AB=0.552795;ABP=6.90816;AC=3;AF=0.5;AN=6;AO=89;CIGAR=1X;DP=161;DPB=161;DPRA=0;EPP=196.271;EPPR=159.356;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=3540;QR=2878;RO=72;RPL=0;RPP=196.271;RPPR=159.356;RPR=89;RUN=1;SAF=89;SAP=196.271;SAR=0;SRF=72;SRP=159.356;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:67:25,42:25:1001:42:1673:-130.623,0,-70.2157 0/1:34:15,19:15:600:19:736:-56.322,0,-44.1009 0/1:60:32,28:32:1277:28:1131:-84.0099,0,-97.1348 dDocent_Contig_6428 51 . G T 810.068 . AB=0.38961;ABP=11.1604;AC=3;AF=0.5;AN=6;AO=30;CIGAR=1X;DP=77;DPB=77;DPRA=0;EPP=68.1545;EPPR=105.07;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=1207;QR=1860;RO=47;RPL=30;RPP=68.1545;RPPR=105.07;RPR=0;RUN=1;SAF=30;SAP=68.1545;SAR=0;SRF=47;SRP=105.07;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:50:32,18:32:1272:18:720:-50.0727,0,-99.7015 0/1:9:6,3:6:228:3:121:-8.57093,0,-18.1734 0/1:18:9,9:9:360:9:366:-27.886,0,-27.3429 dDocent_Contig_6430 13 . C T 5048.47 . AB=0.333919;ABP=139.332;AC=3;AF=0.5;AN=6;AO=190;CIGAR=1X2M1X;DP=569;DPB=569;DPRA=0;EPP=415.59;EPPR=821.655;GTI=0;LEN=1;MEANALT=1.66667;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=7570;QR=15011;RO=377;RPL=0;RPP=415.59;RPPR=821.655;RPR=190;RUN=1;SAF=190;SAP=415.59;SAR=0;SRF=377;SRP=821.655;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|1:345:215,129:215:8609:129:5135:-358.102,0,-670.395 0|1:71:49,22:49:1935:22:878:-57.957,0,-152.988 0|1:153:113,39:113:4467:39:1557:-94.311,0,-355.934 dDocent_Contig_6431 25 . G A 1239.93 . AB=0.175711;ABP=356.511;AC=3;AF=0.5;AN=6;AO=68;CIGAR=1X;DP=387;DPB=387;DPRA=0;EPP=150.67;EPPR=695.71;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=2722;QR=12661;RO=319;RPL=0;RPP=150.67;RPPR=695.71;RPR=68;RUN=1;SAF=68;SAP=150.67;SAR=0;SRF=319;SRP=695.71;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:258:206,52:206:8213:52:2069:-108.717,0,-661.065 0/1:37:29,8:29:1119:8:327:-18.662,0,-89.8566 0/1:92:84,8:84:3329:8:326:-2.01511,0,-271.967 dDocent_Contig_6433 152 . N G 192.659 . AB=0;ABP=0;AC=4;AF=1;AN=4;AO=5;CIGAR=1X;DP=5;DPB=5;DPRA=0;EPP=13.8677;EPPR=0;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=0;NS=2;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=202;QR=0;RO=0;RPL=5;RPP=13.8677;RPPR=0;RPR=0;RUN=1;SAF=0;SAP=13.8677;SAR=5;SRF=0;SRP=0;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 1/1:2:0,2:0:0:2:80:-7.59157,-0.60206,0 ./.:.:.:.:.:.:.:. 1/1:3:0,3:0:0:3:122:-11.3725,-0.90309,0 dDocent_Contig_6434 34 . C A 5033.98 . AB=0.722727;ABP=97.8049;AC=3;AF=0.5;AN=6;AO=159;CIGAR=2M1X3M;DP=220;DPB=217.333;DPRA=0;EPP=348.274;EPPR=113.755;GTI=0;LEN=1;MEANALT=2.66667;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=1.38778e-17;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=6364;QR=2010;RO=51;RPL=0;RPP=348.274;RPPR=113.755;RPR=159;RUN=1;SAF=159;SAP=348.274;SAR=0;SRF=51;SRP=113.755;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|1:121:23,93:23:907:93:3760:-303.083,0,-46.6286 0|1:41:9,29:9:358:29:1142:-91.2373,0,-20.7605 0|1:58:19,37:19:745:37:1462:-114.601,0,-50.1451 dDocent_Contig_6435 13 . A T 65.7678 . AB=0.130435;ABP=57.5803;AC=1;AF=0.166667;AN=6;AO=9;CIGAR=1X;DP=192;DPB=192;DPRA=0.423077;EPP=22.5536;EPPR=400.39;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=0.994536;PAO=0;PQA=0;PQR=0;PRO=0;QA=366;QR=7310;RO=183;RPL=0;RPP=22.5536;RPPR=400.39;RPR=9;RUN=1;SAF=9;SAP=22.5536;SAR=0;SRF=183;SRP=400.39;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:104:104,0:104:4155:0:0:0,-31.3071,-373.922 0/1:46:40,6:40:1590:6:243:-8.40059,0,-129.489 0/0:42:39,3:39:1565:3:123:0,-1.17847,-129.624 dDocent_Contig_6436 54 . C G 1402.28 . AB=0.590361;ABP=8.89682;AC=3;AF=0.5;AN=6;AO=49;CIGAR=1X;DP=83;DPB=83;DPRA=0;EPP=109.412;EPPR=76.8404;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=6.93889e-18;PAIRED=0.959184;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=1886;QR=1347;RO=34;RPL=49;RPP=109.412;RPPR=76.8404;RPR=0;RUN=1;SAF=49;SAP=109.412;SAR=0;SRF=34;SRP=76.8404;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:48:21,27:21:852:27:1034:-78.9005,0,-62.5421 0/1:23:8,15:8:292:15:566:-44.3483,0,-19.6944 0/1:12:5,7:5:203:7:286:-22.5025,0,-15.0407 dDocent_Contig_6437 123 . A G 654.871 . AB=0.297297;ABP=42.625;AC=2;AF=0.333333;AN=6;AO=34;CIGAR=6M1X4M;DP=124;DPB=124.091;DPRA=0;EPP=76.8404;EPPR=191.928;GTI=0;LEN=1;MEANALT=1.66667;MQM=60;MQMR=60;NS=3;NUMALT=2;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=1162;QR=2934;RO=87;RPL=0;RPP=76.8404;RPPR=191.928;RPR=34;RUN=1;SAF=0;SAP=76.8404;SAR=34;SRF=0;SRP=191.928;SRR=87;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|1:87:59,0,28:59:1989:0,28:0,954:-59.9794,-77.7402,-238.929,0,-161.528,-153.1 0|0:13:11,0,1:11:377:0,1:0,34:0,-3.31133,-34.0432,-0.408394,-31.2835,-30.9825 0|1:24:17,2,5:17:568:2,5:70,174:-9.03,-8.45147,-53.8249,0,-40.2749,-44.4669 dDocent_Contig_6438 7 . A C 773.728 . AB=0.454545;ABP=4.19474;AC=3;AF=0.5;AN=6;AO=30;CIGAR=1X;DP=66;DPB=66;DPRA=0;EPP=68.1545;EPPR=81.1833;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=1130;QR=1354;RO=36;RPL=0;RPP=68.1545;RPPR=81.1833;RPR=30;RUN=1;SAF=30;SAP=68.1545;SAR=0;SRF=36;SRP=81.1833;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:39:18,21:18:677:21:784:-59.141,0,-49.522 0/1:14:10,4:10:378:4:152:-9.83521,0,-30.1577 0/1:13:8,5:8:299:5:194:-13.9195,0,-23.3513 dDocent_Contig_6439 10 . A G 92.9406 . AB=0.159091;ABP=47.4268;AC=2;AF=0.333333;AN=6;AO=7;CIGAR=1X;DP=117;DPB=117;DPRA=0.30137;EPP=18.2106;EPPR=241.872;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=3.46945e-18;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=281;QR=4387;RO=110;RPL=0;RPP=18.2106;RPPR=241.872;RPR=7;RUN=1;SAF=7;SAP=18.2106;SAR=0;SRF=110;SRP=241.872;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:73:73,0:73:2906:0:0:0,-21.9752,-261.643 0/1:25:21,4:21:846:4:161:-7.34915,0,-68.9276 0/1:19:16,3:16:635:3:120:-5.46774,0,-51.7641 dDocent_Contig_6440 35 . C A 1321.35 . AB=0.046875;ABP=231.286;AC=0;AF=0;AN=6;AO=6;CIGAR=2X;DP=199;DPB=199;DPRA=0;EPP=16.0391;EPPR=302.673;GTI=0;LEN=1;MEANALT=2.5;MQM=60;MQMR=60;NS=3;NUMALT=2;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=224;QR=5456;RO=138;RPL=0;RPP=16.0391;RPPR=302.673;RPR=6;RUN=1;SAF=6;SAP=16.0391;SAR=0;SRF=138;SRP=302.673;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|0:73:54,3,16:54:2144:3,16:112,641:-36.5732,-43.6633,-219.252,0,-167.348,-171.7 0|0:71:48,0,23:48:1875:0,23:0,922:-61.9125,-76.362,-230.48,0,-154.515,-147.591 0|0:55:36,3,15:36:1437:3,15:112,606:-39.1718,-40.8445,-158.295,0,-109.237,-113.888 dDocent_Contig_6442 51 . T A 2768.55 . AB=0.556886;ABP=7.70432;AC=3;AF=0.5;AN=6;AO=93;CIGAR=1X;DP=167;DPB=167;DPRA=0;EPP=204.957;EPPR=163.699;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=3687;QR=2985;RO=74;RPL=93;RPP=204.957;RPPR=163.699;RPR=0;RUN=1;SAF=93;SAP=204.957;SAR=0;SRF=74;SRP=163.699;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:85:25,60:25:1008:60:2367:-187.603,0,-65.427 0/1:40:23,17:23:932:17:688:-50.2081,0,-72.1415 0/1:42:26,16:26:1045:16:632:-44.5665,0,-81.6968 dDocent_Contig_6443 20 . A G 473.904 . AB=0.150685;ABP=312.49;AC=3;AF=0.5;AN=6;AO=44;CIGAR=1X;DP=292;DPB=292;DPRA=0;EPP=98.5551;EPPR=490.681;GTI=0;LEN=1;MEANALT=1;MQM=54.4318;MQMR=57.3952;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=0.903226;PAO=0;PQA=0;PQR=0;PRO=0;QA=1690;QR=9840;RO=248;RPL=0;RPP=98.5551;RPPR=541.535;RPR=44;RUN=1;SAF=44;SAP=98.5551;SAR=0;SRF=242;SRP=490.681;SRR=6;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:106:92,14:92:3600:14:554:-18.293,0,-289.992 0/1:116:95,21:95:3796:21:777:-23.0196,0,-291.417 0/1:70:61,9:61:2444:9:359:-11.6007,0,-192.818 dDocent_Contig_6445 7 . A G 1569.14 . AB=0.560345;ABP=6.67934;AC=3;AF=0.5;AN=6;AO=65;CIGAR=1X;DP=116;DPB=116;DPRA=0;EPP=144.156;EPPR=113.755;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=2183;QR=1925;RO=51;RPL=0;RPP=144.156;RPPR=113.755;RPR=65;RUN=1;SAF=65;SAP=144.156;SAR=0;SRF=51;SRP=113.755;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:39:14,25:14:531:25:850:-65.0569,0,-36.3932 0/1:45:21,24:21:792:24:833:-61.7221,0,-58.0562 0/1:32:16,16:16:602:16:500:-35.6577,0,-44.8814 dDocent_Contig_6446 24 . G C 63.6327 . AB=0.190476;ABP=20.4855;AC=1;AF=0.166667;AN=6;AO=4;CIGAR=1X2M1X;DP=69;DPB=69;DPRA=0.875;EPP=11.6962;EPPR=144.156;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=157;QR=2502;RO=65;RPL=0;RPP=11.6962;RPPR=144.156;RPR=4;RUN=1;SAF=4;SAP=11.6962;SAR=0;SRF=65;SRP=144.156;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|0:41:41,0:41:1597:0:0:0,-12.3422,-143.97 0|0:7:7,0:7:259:0:0:0,-2.10721,-23.6602 0|1:21:17,4:17:646:4:157:-8.18717,0,-52.1414 dDocent_Contig_6447 23 . T C 168.3 . AB=0.25;ABP=20.3821;AC=1;AF=0.166667;AN=6;AO=8;CIGAR=1X;DP=61;DPB=61;DPRA=2.2069;EPP=20.3821;EPPR=118.098;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=307;QR=2118;RO=53;RPL=0;RPP=20.3821;RPPR=118.098;RPR=8;RUN=1;SAF=8;SAP=20.3821;SAR=0;SRF=53;SRP=118.098;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:32:24,8:24:977:8:307:-18.3529,0,-78.5931 0/0:9:9,0:9:353:0:0:0,-2.70927,-32.1298 0/0:20:20,0:20:788:0:0:0,-6.0206,-71.235 dDocent_Contig_6448 34 . A T 841.673 . AB=0.410959;ABP=8.03741;AC=2;AF=0.333333;AN=6;AO=34;CIGAR=1X;DP=167;DPB=167;DPRA=0;EPP=76.8404;EPPR=291.816;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=1361;QR=5225;RO=133;RPL=0;RPP=76.8404;RPPR=291.816;RPR=34;RUN=1;SAF=34;SAP=76.8404;SAR=0;SRF=133;SRP=291.816;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:94:90,4:90:3546:4:150:0,-14.4339,-305.314 0/1:28:16,12:16:612:12:485:-35.5726,0,-46.97 0/1:45:27,18:27:1067:18:726:-52.1176,0,-82.7677 dDocent_Contig_6449 31 . T A 252.622 . AB=0.333333;ABP=10.2485;AC=1;AF=0.166667;AN=6;AO=10;CIGAR=1X;DP=61;DPB=61;DPRA=1.93548;EPP=24.725;EPPR=113.755;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=394;QR=2045;RO=51;RPL=0;RPP=24.725;RPPR=113.755;RPR=10;RUN=1;SAF=10;SAP=24.725;SAR=0;SRF=51;SRP=113.755;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:30:20,10:20:798:10:394:-26.785,0,-63.1075 0/0:13:13,0:13:519:0:0:0,-3.91339,-47.0567 0/0:18:18,0:18:728:0:0:0,-5.41854,-65.8446 dDocent_Contig_6450 23 . T C 136.934 . AB=0.2;ABP=30.3709;AC=1;AF=0.166667;AN=6;AO=8;CIGAR=1X;DP=75;DPB=75;DPRA=1.0625;EPP=20.3821;EPPR=148.499;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=3.46945e-18;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=322;QR=2693;RO=67;RPL=0;RPP=20.3821;RPPR=148.499;RPR=8;RUN=1;SAF=8;SAP=20.3821;SAR=0;SRF=67;SRP=148.499;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:35:28,7:28:1123:7:282:-15.216,0,-90.8177 0/0:16:15,1:15:595:1:40:0,-0.820801,-49.8932 0/0:24:24,0:24:975:0:0:0,-7.22472,-88.0463 dDocent_Contig_6451 44 . G A 648.242 . AB=0.168142;ABP=219.197;AC=3;AF=0.5;AN=6;AO=38;CIGAR=1X;DP=226;DPB=226;DPRA=0;EPP=85.5263;EPPR=402.607;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=1523;QR=7517;RO=188;RPL=0;RPP=85.5263;RPPR=402.607;RPR=38;RUN=1;SAF=38;SAP=85.5263;SAR=0;SRF=188;SRP=411.247;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:157:130,27:130:5184:27:1089:-51.0352,0,-419.168 0/1:18:16,2:16:638:2:76:-1.79627,0,-52.3364 0/1:51:42,9:42:1695:9:358:-17.2296,0,-137.418 dDocent_Contig_6453 106 . N A 397.566 . AB=0;ABP=0;AC=4;AF=1;AN=4;AO=13;CIGAR=2X;DP=13;DPB=13;DPRA=0;EPP=31.2394;EPPR=0;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=0;NS=2;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=431;QR=0;RO=0;RPL=0;RPP=31.2394;RPPR=0;RPR=13;RUN=1;SAF=0;SAP=31.2394;SAR=13;SRF=0;SRP=0;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 1|1:10:0,10:0:0:10:324:-29.4731,-3.0103,0 .:.:.:.:.:.:.:. 1|1:3:0,3:0:0:3:107:-9.98217,-0.90309,0 dDocent_Contig_6454 41 . T G 3901.38 . AB=0.562232;ABP=10.8481;AC=3;AF=0.5;AN=6;AO=131;CIGAR=1X;DP=233;DPB=233;DPRA=0;EPP=287.473;EPPR=224.5;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=0.977099;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=5168;QR=3951;RO=102;RPL=0;RPP=287.473;RPPR=224.5;RPR=131;RUN=1;SAF=131;SAP=287.473;SAR=0;SRF=102;SRP=224.5;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:138:62,76:62:2381:76:3013:-229.732,0,-172.92 0/1:23:15,8:15:582:8:309:-21.2455,0,-45.7895 0/1:72:25,47:25:988:47:1846:-144.684,0,-67.5477 dDocent_Contig_6455 17 . G A 637.523 . AB=0.389831;ABP=9.23028;AC=2;AF=0.333333;AN=6;AO=23;CIGAR=1X;DP=67;DPB=67;DPRA=3.6875;EPP=52.9542;EPPR=98.5551;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=937;QR=1749;RO=44;RPL=0;RPP=52.9542;RPPR=98.5551;RPR=23;RUN=1;SAF=23;SAP=52.9542;SAR=0;SRF=44;SRP=98.5551;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:36:23,13:23:919:13:532:-37.3891,0,-72.1749 0/0:8:8,0:8:324:0:0:0,-2.40824,-29.5292 0/1:23:13,10:13:506:10:405:-29.8861,0,-38.9527 dDocent_Contig_6456 97 . G T 813.943 . AB=0.293333;ABP=58.6579;AC=2;AF=0.333333;AN=6;AO=46;CIGAR=1X;DP=199;DPB=199;DPRA=0;EPP=102.898;EPPR=333.074;GTI=0;LEN=1;MEANALT=1.33333;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=1502;QR=4796;RO=152;RPL=46;RPP=102.898;RPPR=333.074;RPR=0;RUN=1;SAF=46;SAP=102.898;SAR=0;SRF=152;SRP=333.074;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:122:82,39:82:2582:39:1284:-79.0903,0,-195.871 0/1:28:23,5:23:700:5:155:-5.82687,0,-54.8597 0/0:49:47,2:47:1514:2:63:0,-8.76683,-130.561 dDocent_Contig_6458 12 . T G 50.5753 . AB=0.0816327;ABP=77.5051;AC=0;AF=0;AN=6;AO=4;CIGAR=6M1X4M;DP=112;DPB=111.455;DPRA=1.55556;EPP=11.6962;EPPR=207.469;GTI=0;LEN=1;MEANALT=2;MQM=60;MQMR=59.7941;NS=3;NUMALT=2;ODDS=6.93889e-18;PAIRED=0;PAIREDR=0.745098;PAO=0;PQA=0;PQR=0;PRO=0;QA=162;QR=3989;RO=102;RPL=0;RPP=11.6962;RPPR=224.5;RPR=4;RUN=1;SAF=4;SAP=11.6962;SAR=0;SRF=100;SRP=207.469;SRR=2;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|0:49:39,6,4:39:1527:6,4:224,162:-6.5804,0,-123.689,-4.94967,-112.135,-129.268 0|0:34:34,0,0:34:1337:0,0:0,0:0,-10.235,-120.608,-10.235,-120.608,-120.608 0|0:29:29,0,0:29:1125:0,0:0,0:0,-8.72987,-101.545,-8.72987,-101.545,-101.545 dDocent_Contig_6459 59 . A C 1377.78 . AB=0.0943396;ABP=78.766;AC=0;AF=0;AN=6;AO=5;CIGAR=1X2M3D4M;DP=79;DPB=62.8;DPRA=0;EPP=13.8677;EPPR=57.2971;GTI=0;LEN=1;MEANALT=2;MQM=60;MQMR=60;NS=3;NUMALT=2;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=191;QR=971;RO=25;RPL=5;RPP=13.8677;RPPR=57.2971;RPR=0;RUN=1;SAF=5;SAP=13.8677;SAR=0;SRF=25;SRP=57.2971;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|0:53:9,5,39:9:352:5,39:191,1464:-117.18,-104.219,-131.656,0,-13.2781,-17.2044 0|0:12:10,0,2:10:388:0,2:0,80:-3.97943,-6.98973,-38.8557,0,-32.2636,-31.6615 0|0:14:6,0,8:6:231:0,8:0,289:-22.1391,-23.9453,-42.9215,0,-19.3507,-16.9424 dDocent_Contig_6460 66 . G A 120.003 . AB=0.384615;ABP=4.51363;AC=1;AF=0.166667;AN=6;AO=6;CIGAR=1X;DP=48;DPB=48;DPRA=1.68182;EPP=16.0391;EPPR=94.2121;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=0.952381;PAO=0;PQA=0;PQR=0;PRO=0;QA=234;QR=1668;RO=42;RPL=6;RPP=16.0391;RPPR=94.2121;RPR=0;RUN=1;SAF=6;SAP=16.0391;SAR=0;SRF=42;SRP=94.2121;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:24:23,1:23:909:1:41:0,-3.13015,-78.0126 0/1:13:8,5:8:314:5:193:-13.8242,0,-24.7074 0/0:11:11,0:11:445:0:0:0,-3.31133,-40.4055 dDocent_Contig_6461 30 . T C 127.977 . AB=0.272727;ABP=12.8806;AC=1;AF=0.166667;AN=6;AO=6;CIGAR=1X;DP=96;DPB=96;DPRA=0.594595;EPP=16.0391;EPPR=198.443;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=1.73472e-18;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=232;QR=3493;RO=90;RPL=0;RPP=16.0391;RPPR=198.443;RPR=6;RUN=1;SAF=6;SAP=16.0391;SAR=0;SRF=90;SRP=198.443;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:62:62,0:62:2385:0:0:0,-18.6639,-214.792 0/0:12:12,0:12:480:0:0:0,-3.61236,-43.5512 0/1:22:16,6:16:628:6:232:-14.6216,0,-50.2314 dDocent_Contig_6462 12 . T A 72.2722 . AB=0.15;ABP=45.5712;AC=1;AF=0.166667;AN=6;AO=7;CIGAR=1X;DP=91;DPB=91;DPRA=1.66667;EPP=18.2106;EPPR=185.414;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=267;QR=3371;RO=84;RPL=0;RPP=18.2106;RPPR=185.414;RPR=7;RUN=1;SAF=7;SAP=18.2106;SAR=0;SRF=84;SRP=185.414;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:40:34,6:34:1363:6:227:-8.7501,0,-110.887 0/0:21:21,0:21:829:0:0:0,-6.32163,-74.918 0/0:30:29,1:29:1179:1:40:0,-5.03522,-102.388 dDocent_Contig_6463 29 . A C 2865.79 . AB=0.156746;ABP=518.804;AC=1;AF=0.166667;AN=6;AO=79;CIGAR=1M1X3M;DP=504;DPB=531.4;DPRA=0;EPP=174.557;EPPR=626.223;GTI=0;LEN=1;MEANALT=3.33333;MQM=59;MQMR=60;NS=3;NUMALT=3;ODDS=1.11022e-16;PAIRED=0.911392;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=3144;QR=11242;RO=287;RPL=0;RPP=174.557;RPPR=626.223;RPR=79;RUN=1;SAF=79;SAP=174.557;SAR=0;SRF=287;SRP=626.223;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|0:307:176,17,68,45:176:6875:17,68,45:673,2630,1778:-163.012,-160.604,-720.634,0,-509.756,-544.675,-69.8351,-579.595,-418.988,-621.438 0|0:41:18,3,18,2:18:699:3,18,2:119,695,82:-51.6379,-47.2597,-103.787,0,-47.6234,-52.0014,-50.2863,-97.9208,-50.65,-107.115 0|1:156:93,12,19,32:93:3668:12,19,32:469,743,1284:-77.4522,-66.8919,-365.064,-44.3658,-307.593,-340.43,0,-263.231,-240.705,-292.155 dDocent_Contig_6464 8 . A C 30.6625 . 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T C 558.288 . AB=0.197183;ABP=172.66;AC=2;AF=0.333333;AN=6;AO=45;CIGAR=1X;DP=254;DPB=254;DPRA=0;EPP=100.727;EPPR=456.848;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=59.9569;NS=3;NUMALT=1;ODDS=0;PAIRED=0.977778;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=1469;QR=7048;RO=209;RPL=45;RPP=100.727;RPPR=456.848;RPR=0;RUN=1;SAF=45;SAP=100.727;SAR=0;SRF=209;SRP=456.848;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:139:112,27:112:3758:27:848:-34.7701,0,-296.594 0/0:41:38,3:38:1298:3:104:0,-2.63914,-107.416 0/1:74:59,15:59:1992:15:517:-24.5816,0,-157.273 dDocent_Contig_6471 175 . A T 1258.06 . AB=0.0909091;ABP=450.728;AC=0;AF=0;AN=6;AO=28;CIGAR=17M1X7M;DP=308;DPB=305.24;DPRA=0;EPP=63.8115;EPPR=428.619;GTI=0;LEN=1;MEANALT=4.66667;MQM=60;MQMR=60;NS=3;NUMALT=3;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=1093;QR=7510;RO=196;RPL=28;RPP=63.8115;RPPR=428.619;RPR=0;RUN=1;SAF=0;SAP=63.8115;SAR=28;SRF=0;SRP=428.619;SRR=196;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|0:182:109,13,34,25:109:4192:13,34,25:435,1251,971:-69.4662,-67.071,-407.291,0,-308.928,-333.903,-22.5025,-331.437,-264.371,-359.122 0|0:66:40,0,20,2:40:1523:0,20,2:0,720,82:-46.7474,-58.7886,-183.722,0,-124.987,-118.966,-52.015,-176.953,-118.217,-176.351 0|0:60:47,1,10,1:47:1795:1,10,1:34,359,40:-15.1155,-26.5079,-173.479,0,-144.502,-144.249,-25.9659,-170.485,-143.963,-172.941 dDocent_Contig_6472 1 . N A 1044.49 . AB=0;ABP=0;AC=6;AF=1;AN=6;AO=29;CIGAR=1X;DP=29;DPB=29;DPRA=0;EPP=36.0317;EPPR=0;GTI=0;LEN=1;MEANALT=1;MQM=57.5172;MQMR=0;NS=3;NUMALT=1;ODDS=0;PAIRED=0.862069;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=1148;QR=0;RO=0;RPL=0;RPP=65.983;RPPR=0;RPR=29;RUN=1;SAF=25;SAP=36.0317;SAR=4;SRF=0;SRP=0;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 1/1:23:0,23:0:0:23:913:-82.0538,-6.92369,0 1/1:1:0,1:0:0:1:40:-3.99568,-0.30103,0 1/1:5:0,5:0:0:5:195:-17.9213,-1.50515,0 dDocent_Contig_6473 8 . A G 1734.39 . AB=0.457143;ABP=5.24381;AC=3;AF=0.5;AN=6;AO=64;CIGAR=1X;DP=140;DPB=140;DPRA=0;EPP=141.985;EPPR=168.042;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=2446;QR=2928;RO=76;RPL=0;RPP=141.985;RPPR=168.042;RPR=64;RUN=1;SAF=64;SAP=141.985;SAR=0;SRF=76;SRP=168.042;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:61:37,24:37:1426:24:922:-64.932,0,-110.256 0/1:30:22,8:22:846:8:302:-18.507,0,-67.4323 0/1:49:17,32:17:656:32:1222:-95.5233,0,-44.6267 dDocent_Contig_6474 31 . T C 741.376 . AB=0.0673077;ABP=172.135;AC=1;AF=0.166667;AN=6;AO=7;CIGAR=5M1X2M1X7M1X6M;DP=235;DPB=211.957;DPRA=0;EPP=18.2106;EPPR=350.446;GTI=0;LEN=1;MEANALT=4.5;MQM=60;MQMR=60;NS=3;NUMALT=4;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=268;QR=6103;RO=160;RPL=0;RPP=18.2106;RPPR=350.446;RPR=7;RUN=1;SAF=7;SAP=18.2106;SAR=0;SRF=160;SRP=350.446;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|0:131:95,23,0,4,3:95:3614:23,0,4,3:899,0,153,119:-45.3407,0,-289.507,-73.9385,-296.431,-370.344,-61.3822,-283.875,-357.789,-356.584,-64.1405,-286.634,-360.548,-347.992,-359.645 0|1:27:15,3,5,1,2:15:569:3,5,1,2:118,192,35,64:-11.2565,-6.83981,-52.5966,0,-37.7369,-45.1639,-12.9259,-50.653,-43.8223,-59.2839,-10.6268,-48.3499,-41.5195,-54.4347,-56.6792 0|0:77:50,7,2,6,12:50:1920:7,2,6,12:278,76,213,464:-23.0632,-15.2224,-170.724,-31.8819,-166.598,-188.884,-20.7686,-155.48,-172.135,-176.562,0,-134.719,-151.375,-140.257,-153.996 dDocent_Contig_6476 23 . A T 146.174 . AB=0.222222;ABP=27.1378;AC=2;AF=0.333333;AN=6;AO=8;CIGAR=1X;DP=46;DPB=46;DPRA=1.8;EPP=20.3821;EPPR=85.5263;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=3.46945e-18;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=314;QR=1520;RO=38;RPL=0;RPP=20.3821;RPPR=85.5263;RPR=8;RUN=1;SAF=8;SAP=20.3821;SAR=0;SRF=38;SRP=85.5263;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:27:21,6:21:840:6:246:-14.3923,0,-67.7805 0/1:9:7,2:7:275:2:68:-3.74536,0,-22.4077 0/0:10:10,0:10:405:0:0:0,-3.0103,-36.8104 dDocent_Contig_6477 14 . C T 2713.01 . AB=0.0326797;ABP=293.235;AC=0;AF=0;AN=6;AO=5;CIGAR=2X;DP=194;DPB=194;DPRA=0;EPP=13.8677;EPPR=94.2121;GTI=0;LEN=1;MEANALT=4;MQM=60;MQMR=60;NS=3;NUMALT=4;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=202;QR=1691;RO=42;RPL=0;RPP=13.8677;RPPR=94.2121;RPR=5;RUN=1;SAF=5;SAP=13.8677;SAR=0;SRF=42;SRP=94.2121;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|0:111:24,2,39,11,35:24:968:2,39,11,35:80,1563,436,1390:-156.168,-156.802,-235.994,-34.6235,-107.828,-102.678,-127.509,-200.713,-78.5351,-203.992,-48.9734,-122.177,0,-92.8843,-118.231 0|0:42:10,3,15,11,3:10:400:3,15,11,3:122,598,434,122:-48.9895,-41.9357,-73.9823,-2.7563,-25.6417,-31.1904,-16.2929,-39.1778,0,-45.9304,-41.9357,-64.8215,-25.6417,-39.1778,-73.9823 0|0:41:8,0,20,2,11:8:323:0,20,2,11:0,793,82,431:-71.6659,-74.0741,-100.703,-8.80358,-35.4345,-29.4139,-67.3051,-93.9343,-28.6651,-93.3323,-38.6348,-65.2638,0,-58.4949,-61.9525 dDocent_Contig_6478 97 . A C 32.7084 . 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AB=0.037037;ABP=606.197;AC=0;AF=0;AN=6;AO=12;CIGAR=7M3X1M;DP=372;DPB=375.091;DPRA=0;EPP=29.068;EPPR=176.728;GTI=0;LEN=1;MEANALT=13;MQM=21;MQMR=60;NS=3;NUMALT=7;ODDS=1.11022e-16;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=252;QR=3054;RO=80;RPL=0;RPP=29.068;RPPR=176.728;RPR=12;RUN=1;SAF=12;SAP=29.068;SAR=0;SRF=80;SRP=176.728;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|0:188:35,12,10,4,4,6,36,69:35:1334:12,10,4,4,6,36,69:445,399,84,88,234,1432,2623:-205.998,-180.122,-285.944,-183.72,-256.743,-290.144,-211.26,-284.282,-287.88,-319.489,-212.783,-285.805,-289.403,-316.942,-321.012,-206.83,-279.852,-283.45,-310.989,-312.511,-314.457,-103.884,-176.909,-180.507,-208.047,-209.57,-203.617,-202.484,-3.21344,-76.2424,-79.8398,-107.383,-108.906,-102.953,0,-91.8841 0|0:48:12,1,3,0,0,4,12,11:12:456:1,3,0,0,4,12,11:39,121,0,0,155,472,423:-35.2275,-35.633,-72.7351,-28.8686,-63.0664,-65.3699,-38.8398,-73.0361,-66.273,-76.2426,-38.8398,-73.0361,-66.273,-76.2426,-76.2426,-33.3453,-67.5368,-60.7742,-70.7429,-70.7429,-69.5388,0,-34.2041,-27.4395,-37.4111,-37.4111,-31.916,-33.7987,-4.73699,-38.938,-32.1738,-42.1448,-42.1448,-36.6498,-3.3063,-38.8335 0|0:136:33,3,8,8,8,3,2,53:33:1264:3,8,8,8,3,2,53:116,311,168,304,111,81,1973:-150.443,-150.847,-253.691,-134.829,-229.048,-236.169,-149.833,-244.048,-228.031,-251.169,-141.81,-236.027,-220.01,-235.011,-243.148,-154.127,-248.344,-232.327,-247.328,-239.306,-256.97,-153.696,-247.914,-231.897,-246.897,-238.876,-251.194,-256.841,0,-94.2366,-78.217,-93.2265,-85.2006,-97.5177,-97.0859,-87.8122 dDocent_Contig_6481 24 . 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AB=0.37931;ABP=36.0317;AC=3;AF=0.5;AN=6;AO=99;CIGAR=1X;DP=261;DPB=261;DPRA=0;EPP=217.986;EPPR=354.789;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=1.38778e-17;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=3886;QR=6284;RO=162;RPL=99;RPP=217.986;RPPR=354.789;RPR=0;RUN=1;SAF=99;SAP=217.986;SAR=0;SRF=162;SRP=354.789;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:127:78,49:78:3045:49:1956:-138.012,0,-235.92 0/1:71:39,32:39:1545:32:1260:-92.3029,0,-117.916 0/1:63:45,18:45:1694:18:670:-41.6623,0,-133.758 dDocent_Contig_6494 98 . N T 96.1056 . AB=0;ABP=0;AC=2;AF=1;AN=2;AO=3;CIGAR=1X;DP=3;DPB=3;DPRA=0;EPP=9.52472;EPPR=0;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=0;NS=1;NUMALT=1;ODDS=6.68461;PAIRED=1;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=103;QR=0;RO=0;RPL=3;RPP=9.52472;RPPR=0;RPR=0;RUN=1;SAF=3;SAP=9.52472;SAR=0;SRF=0;SRP=0;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 1/1:3:0,3:0:0:3:103:-9.61002,-0.90309,0 ./.:.:.:.:.:.:.:. ./.:.:.:.:.:.:.:. dDocent_Contig_6495 14 . C T 442.598 . AB=0.150794;ABP=136.47;AC=3;AF=0.5;AN=6;AO=19;CIGAR=1X6M1X;DP=126;DPB=126;DPRA=0;EPP=44.2683;EPPR=194.1;GTI=0;LEN=1;MEANALT=3;MQM=60;MQMR=60;NS=3;NUMALT=2;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=726;QR=3477;RO=88;RPL=0;RPP=44.2683;RPPR=194.1;RPR=19;RUN=1;SAF=19;SAP=44.2683;SAR=0;SRF=88;SRP=194.1;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|1:69:50,10,5:50:1983:10,5:401,198:-17.9878,0,-160.22,-16.7451,-146.935,-178.469 0|1:28:16,2,10:16:637:2,10:77,389:-27.1525,-25.6476,-77.5046,0,-46.1444,-49.4548 0|1:29:22,2,4:22:857:2,4:81,139:-4.64203,-4.57273,-74.4264,0,-63.7365,-69.2127 dDocent_Contig_6496 11 . A G 486.815 . AB=0.0744681;ABP=150.855;AC=0;AF=0;AN=6;AO=7;CIGAR=1M1D3M1X6M1X;DP=136;DPB=134.692;DPRA=0;EPP=18.2106;EPPR=185.414;GTI=0;LEN=1;MEANALT=5;MQM=60;MQMR=60;NS=3;NUMALT=4;ODDS=2.77556e-17;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=264;QR=3265;RO=84;RPL=0;RPP=18.2106;RPPR=185.414;RPR=7;RUN=1;SAF=7;SAP=18.2106;SAR=0;SRF=84;SRP=185.414;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|0:94:57,7,15,0,8:57:2211:7,15,0,8:264,584,0,323:-30.8406,-26.3676,-205.912,0,-160.021,-177.138,-47.9993,-208.019,-181.654,-229.653,-21.3675,-181.39,-155.024,-203.024,-200.616 0|0:25:17,0,7,0,0:17:658:0,7,0,0:0,262,0,0:-16.4481,-21.5656,-75.635,0,-54.1794,-52.0722,-21.5656,-75.635,-54.1794,-75.635,-21.5656,-75.635,-54.1794,-75.635,-75.635 0|0:17:10,0,1,3,3:10:396:0,1,3,3:0,38,113,120:-6.88394,-9.89424,-42.4933,-6.7789,-39.3775,-39.0765,-0.642547,-33.2371,-30.1218,-32.334,0,-32.607,-29.4913,-23.3513,-31.7039 dDocent_Contig_6498 112 . G A 71.9329 . AB=0.142857;ABP=72.8076;AC=2;AF=0.333333;AN=6;AO=9;CIGAR=1X;DP=67;DPB=67;DPRA=7.875;EPP=22.5536;EPPR=128.956;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=321;QR=1984;RO=58;RPL=0;RPP=22.5536;RPPR=128.956;RPR=9;RUN=1;SAF=0;SAP=22.5536;SAR=9;SRF=0;SRP=128.956;SRR=58;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:37:31,6:31:1051:6:214:-8.46972,0,-83.755 0/0:4:4,0:4:135:0:0:0,-1.20412,-12.4836 0/1:26:23,3:23:798:3:107:-2.15539,0,-64.3128 dDocent_Contig_6499 107 . N T 63.4488 . AB=0;ABP=0;AC=2;AF=1;AN=2;AO=2;CIGAR=1X;DP=2;DPB=2;DPRA=0;EPP=7.35324;EPPR=0;GTI=0;LEN=1;MEANALT=1;MQM=53;MQMR=0;NS=1;NUMALT=1;ODDS=5.99146;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=67;QR=0;RO=0;RPL=0;RPP=7.35324;RPPR=0;RPR=2;RUN=1;SAF=0;SAP=7.35324;SAR=2;SRF=0;SRP=0;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 1/1:2:0,2:0:0:2:67:-6.3438,-0.60206,0 ./.:.:.:.:.:.:.:. ./.:.:.:.:.:.:.:. dDocent_Contig_6500 26 . T C 805.572 . AB=0.326316;ABP=27.9022;AC=3;AF=0.5;AN=6;AO=31;CIGAR=1X;DP=95;DPB=95;DPRA=0;EPP=70.3259;EPPR=141.985;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=1262;QR=2570;RO=64;RPL=0;RPP=70.3259;RPPR=141.985;RPR=31;RUN=1;SAF=31;SAP=70.3259;SAR=0;SRF=64;SRP=141.985;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:58:45,13:45:1798:13:528:-30.4074,0,-144.57 0/1:4:3,1:3:123:1:41:-2.89045,0,-10.2607 0/1:33:16,17:16:649:17:693:-52.764,0,-48.8093 dDocent_Contig_6501 10 . T G 299.937 . AB=0.0190114;ABP=531.504;AC=1;AF=0.166667;AN=6;AO=5;CIGAR=4M1X10M;DP=263;DPB=266.6;DPRA=0;EPP=13.8677;EPPR=372.161;GTI=0;LEN=1;MEANALT=8;MQM=60;MQMR=60;NS=3;NUMALT=4;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=197;QR=6678;RO=170;RPL=0;RPP=13.8677;RPPR=372.161;RPR=5;RUN=1;SAF=5;SAP=13.8677;SAR=0;SRF=170;SRP=372.161;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|0:149:86,11,16,6,1:86:3397:11,16,6,1:417,600,237,41:-23.25,-14.9486,-291.18,0,-245.351,-274.725,-29.6359,-274.989,-260.04,-307.373,-45.7541,-291.107,-276.157,-305.795,-324.996 0|1:17:12,2,0,0,2:12:469:2,0,0,2:76,0,0,81:-3.08336,-0.462796,-38.4284,-6.69572,-39.0304,-45.2623,-6.69572,-39.0304,-45.2623,-45.2623,0,-32.3488,-38.5808,-38.5808,-37.9788 0|0:97:72,0,10,8,2:72:2812:0,10,8,2:0,376,315,75:-9.12538,-30.7995,-261.97,0,-231.166,-228.156,-4.88441,-236.059,-205.255,-233.65,-24.6569,-255.827,-225.023,-229.915,-255.225 dDocent_Contig_6503 44 . T G 217.869 . AB=0.222222;ABP=39.2015;AC=2;AF=0.333333;AN=6;AO=12;CIGAR=1X;DP=60;DPB=60;DPRA=4.5;EPP=29.068;EPPR=107.241;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=453;QR=1923;RO=48;RPL=0;RPP=29.068;RPPR=107.241;RPR=12;RUN=1;SAF=12;SAP=29.068;SAR=0;SRF=48;SRP=107.241;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:30:27,3:27:1077:3:115:-1.69358,0,-88.1884 0/0:6:6,0:6:242:0:0:0,-1.80618,-22.1569 0/1:24:15,9:15:604:9:338:-23.5446,0,-47.4742 dDocent_Contig_6504 39 . G A 57.4828 . AB=0.147059;ABP=39.7976;AC=2;AF=0.333333;AN=6;AO=5;CIGAR=3X;DP=39;DPB=39;DPRA=3.4;EPP=13.8677;EPPR=72.4974;GTI=0;LEN=1;MEANALT=1.5;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=0;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=193;QR=1262;RO=32;RPL=0;RPP=13.8677;RPPR=72.4974;RPR=5;RUN=1;SAF=5;SAP=13.8677;SAR=0;SRF=32;SRP=72.4974;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|1:22:20,2:20:790:2:72:-0.212582,0,-64.7979 0|0:5:4,0:4:160:0:0:0,-1.20412,-14.4246 0|1:12:8,3:8:312:3:121:-7.56974,0,-24.7296 dDocent_Contig_6505 127 . C T 125.607 . AB=0.304348;ABP=10.6577;AC=2;AF=0.333333;AN=6;AO=7;CIGAR=1X;DP=29;DPB=29;DPRA=1.91667;EPP=18.2106;EPPR=50.7827;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=247;QR=771;RO=22;RPL=0;RPP=18.2106;RPPR=50.7827;RPR=7;RUN=1;SAF=0;SAP=18.2106;SAR=7;SRF=0;SRP=50.7827;SRR=22;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:14:12,2:12:421:2:67:-2.14842,0,-34.0082 0/0:6:6,0:6:203:0:0:0,-1.80618,-18.6011 0/1:9:4,5:4:147:5:180:-13.8428,0,-10.8806 dDocent_Contig_6506 11 . T A 540.237 . AB=0.465116;ABP=3.46479;AC=3;AF=0.5;AN=6;AO=20;CIGAR=1X;DP=43;DPB=43;DPRA=0;EPP=46.4397;EPPR=52.9542;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=793;QR=926;RO=23;RPL=0;RPP=46.4397;RPPR=52.9542;RPR=20;RUN=1;SAF=20;SAP=46.4397;SAR=0;SRF=23;SRP=52.9542;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:18:4,14:4:164:14:550:-44.4173,0,-9.73136 0/1:8:6,2:6:236:2:82:-5.37144,0,-19.2031 0/1:17:13,4:13:526:4:161:-9.75776,0,-42.5693 dDocent_Contig_6507 98 . N T 97.967 . AB=0;ABP=0;AC=2;AF=1;AN=2;AO=3;CIGAR=1X;DP=3;DPB=3;DPRA=0;EPP=9.52472;EPPR=0;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=0;NS=1;NUMALT=1;ODDS=6.68461;PAIRED=1;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=105;QR=0;RO=0;RPL=3;RPP=9.52472;RPPR=0;RPR=0;RUN=1;SAF=3;SAP=9.52472;SAR=0;SRF=0;SRP=0;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 1/1:3:0,3:0:0:3:105:-9.79616,-0.90309,0 ./.:.:.:.:.:.:.:. ./.:.:.:.:.:.:.:. dDocent_Contig_6508 103 . N A 167.354 . AB=0;ABP=0;AC=2;AF=1;AN=2;AO=5;CIGAR=5X;DP=5;DPB=5;DPRA=0;EPP=13.8677;EPPR=0;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=0;NS=1;NUMALT=1;ODDS=8.07091;PAIRED=1;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=182;QR=0;RO=0;RPL=0;RPP=13.8677;RPPR=0;RPR=5;RUN=1;SAF=5;SAP=13.8677;SAR=0;SRF=0;SRP=0;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL .:.:.:.:.:.:.:. .:.:.:.:.:.:.:. 1|1:5:0,5:0:0:5:182:-16.7352,-1.50515,0 dDocent_Contig_6509 167 . G C 35.2885 . AB=0.142857;ABP=26.2761;AC=1;AF=0.166667;AN=6;AO=3;CIGAR=1X;DP=31;DPB=31;DPRA=4.2;EPP=9.52472;EPPR=63.8115;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=0.964286;PAO=0;PQA=0;PQR=0;PRO=0;QA=122;QR=1124;RO=28;RPL=3;RPP=9.52472;RPPR=63.8115;RPR=0;RUN=1;SAF=0;SAP=9.52472;SAR=3;SRF=0;SRP=63.8115;SRR=28;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:21:18,3:18:729:3:122:-5.05086,0,-59.6131 0/0:1:1,0:1:40:0:0:0,-0.30103,-3.99568 0/0:9:9,0:9:355:0:0:0,-2.70927,-32.3114 dDocent_Contig_6510 7 . T A 75.7993 . AB=0;ABP=0;AC=2;AF=0.333333;AN=6;AO=2;CIGAR=1X;DP=35;DPB=35;DPRA=0.121212;EPP=7.35324;EPPR=72.4974;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=78;QR=1222;RO=32;RPL=0;RPP=7.35324;RPPR=72.4974;RPR=2;RUN=1;SAF=2;SAP=7.35324;SAR=0;SRF=32;SRP=72.4974;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:24:23,0:23:879:0:0:0,-6.92369,-79.3187 1/1:2:0,2:0:0:2:78:-7.40347,-0.60206,0 0/0:9:9,0:9:343:0:0:0,-2.70927,-31.2267 dDocent_Contig_6511 107 . N T 467.992 . AB=0;ABP=0;AC=6;AF=1;AN=6;AO=15;CIGAR=1X;DP=15;DPB=15;DPRA=0;EPP=35.5824;EPPR=0;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=0;NS=3;NUMALT=1;ODDS=0;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=504;QR=0;RO=0;RPL=0;RPP=35.5824;RPPR=0;RPR=15;RUN=1;SAF=0;SAP=35.5824;SAR=15;SRF=0;SRP=0;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 1/1:8:0,8:0:0:8:274:-24.9939,-2.40824,0 1/1:6:0,6:0:0:6:200:-18.3278,-1.80618,0 1/1:1:0,1:0:0:1:30:-2.99957,-0.30103,0 dDocent_Contig_6512 50 . C T 52.0154 . AB=0.102273;ABP=123.922;AC=1;AF=0.166667;AN=6;AO=10;CIGAR=1X;DP=146;DPB=146;DPRA=2.97619;EPP=24.725;EPPR=289.709;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=405;QR=5387;RO=136;RPL=10;RPP=24.725;RPPR=289.709;RPR=0;RUN=1;SAF=10;SAP=24.725;SAR=0;SRF=136;SRP=298.331;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:88:79,9:79:3129:9:365:-6.72442,0,-255.197 0/0:21:21,0:21:821:0:0:0,-6.32163,-74.1999 0/0:37:36,1:36:1437:1:40:0,-7.14243,-125.584 dDocent_Contig_6514 34 . C T 411.161 . AB=0.2375;ABP=50.8913;AC=3;AF=0.5;AN=6;AO=19;CIGAR=1X;DP=80;DPB=80;DPRA=0;EPP=44.2683;EPPR=135.47;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=6.93889e-18;PAIRED=0.894737;PAIREDR=0.852459;PAO=0;PQA=0;PQR=0;PRO=0;QA=765;QR=2430;RO=61;RPL=0;RPP=44.2683;RPPR=135.47;RPR=19;RUN=1;SAF=19;SAP=44.2683;SAR=0;SRF=61;SRP=135.47;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:44:29,15:29:1152:15:602:-41.2687,0,-90.7151 0/1:9:8,1:8:316:1:40:-1.28641,0,-26.0937 0/1:27:24,3:24:962:3:123:-3.33698,0,-78.7498 dDocent_Contig_6516 65 . C T 57.7041 . AB=0.428571;ABP=3.32051;AC=1;AF=0.166667;AN=6;AO=3;CIGAR=1X;DP=44;DPB=44;DPRA=0.378378;EPP=9.52472;EPPR=92.0407;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=104;QR=1563;RO=41;RPL=3;RPP=9.52472;RPPR=92.0407;RPR=0;RUN=1;SAF=3;SAP=9.52472;SAR=0;SRF=41;SRP=92.0407;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:27:27,0:27:1041:0:0:0,-8.12781,-93.9978 0/1:7:4,3:4:155:3:104:-7.59432,0,-12.2179 0/0:10:10,0:10:367:0:0:0,-3.0103,-33.3784 dDocent_Contig_6517 11 . T C 1257.55 . AB=0.5375;ABP=3.98746;AC=3;AF=0.5;AN=6;AO=43;CIGAR=1X;DP=80;DPB=80;DPRA=0;EPP=96.3836;EPPR=83.3548;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=1715;QR=1457;RO=37;RPL=0;RPP=96.3836;RPPR=83.3548;RPR=43;RUN=1;SAF=43;SAP=96.3836;SAR=0;SRF=37;SRP=83.3548;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:41:14,27:14:572:27:1089:-85.9529,0,-39.4794 0/1:15:3,12:3:119:12:467:-37.8581,0,-6.57994 0/1:24:20,4:20:766:4:159:-7.46672,0,-62.0196 dDocent_Contig_6518 79 . G A 486.96 . AB=0.446809;ABP=4.16534;AC=3;AF=0.5;AN=6;AO=21;CIGAR=1X;DP=47;DPB=47;DPRA=0;EPP=48.6112;EPPR=59.4686;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=748;QR=929;RO=26;RPL=21;RPP=48.6112;RPPR=59.4686;RPR=0;RUN=1;SAF=21;SAP=48.6112;SAR=0;SRF=26;SRP=59.4686;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:19:16,3:16:586:3:111:-4.63435,0,-47.3571 0/1:9:2,7:2:74:7:248:-19.9546,0,-4.31661 0/1:19:8,11:8:269:11:389:-29.6289,0,-18.8156 dDocent_Contig_6519 58 . C T 52.8772 . AB=0.25;ABP=9.52472;AC=1;AF=0.166667;AN=6;AO=3;CIGAR=1X;DP=34;DPB=34;DPRA=1.09091;EPP=9.52472;EPPR=70.3259;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=115;QR=1211;RO=31;RPL=3;RPP=9.52472;RPPR=70.3259;RPR=0;RUN=1;SAF=3;SAP=9.52472;SAR=0;SRF=31;SRP=70.3259;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:13:13,0:13:514:0:0:0,-3.91339,-46.6055 0/1:12:9,3:9:362:3:115:-7.11163,0,-29.3316 0/0:9:9,0:9:335:0:0:0,-2.70927,-30.4951 dDocent_Contig_6520 42 . G A 191.007 . AB=0.203704;ABP=44.1879;AC=3;AF=0.5;AN=6;AO=11;CIGAR=1X;DP=54;DPB=54;DPRA=0;EPP=26.8965;EPPR=96.3836;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=436;QR=1728;RO=43;RPL=0;RPP=26.8965;RPPR=96.3836;RPR=11;RUN=1;SAF=11;SAP=26.8965;SAR=0;SRF=43;SRP=96.3836;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:32:29,3:29:1166:3:120:-1.55435,0,-95.5869 0/1:9:5,4:5:198:4:163:-12.3492,0,-15.4876 0/1:13:9,4:9:364:4:153:-10.2255,0,-29.2114 dDocent_Contig_6521 151 . G T 134.009 . AB=0.285714;ABP=11.386;AC=1;AF=0.166667;AN=6;AO=6;CIGAR=1X;DP=32;DPB=32;DPRA=3.81818;EPP=16.0391;EPPR=59.4686;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=0.846154;PAO=0;PQA=0;PQR=0;PRO=0;QA=232;QR=1045;RO=26;RPL=6;RPP=16.0391;RPPR=59.4686;RPR=0;RUN=1;SAF=0;SAP=16.0391;SAR=6;SRF=0;SRP=59.4686;SRR=26;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:21:15,6:15:609:6:232:-14.9237,0,-48.8261 0/0:5:5,0:5:205:0:0:0,-1.50515,-18.835 0/0:6:6,0:6:231:0:0:0,-1.80618,-21.1543 dDocent_Contig_6522 15 . C A 75.3367 . AB=0.428571;ABP=3.32051;AC=1;AF=0.166667;AN=6;AO=3;CIGAR=1X;DP=57;DPB=57;DPRA=0.28;EPP=9.52472;EPPR=120.27;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=0.981481;PAO=0;PQA=0;PQR=0;PRO=0;QA=123;QR=2121;RO=54;RPL=0;RPP=9.52472;RPPR=120.27;RPR=3;RUN=1;SAF=3;SAP=9.52472;SAR=0;SRF=54;SRP=120.27;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:33:33,0:33:1307:0:0:0,-9.93399,-117.889 0/1:7:4,3:4:160:3:123:-9.35758,0,-12.6766 0/0:17:17,0:17:654:0:0:0,-5.11751,-59.179 dDocent_Contig_6523 25 . G A 438.89 . AB=0.390244;ABP=7.30028;AC=2;AF=0.333333;AN=6;AO=16;CIGAR=2X;DP=82;DPB=82;DPRA=0.5;EPP=37.7539;EPPR=128.956;GTI=0;LEN=1;MEANALT=2;MQM=60;MQMR=60;NS=3;NUMALT=2;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=642;QR=2168;RO=58;RPL=0;RPP=37.7539;RPPR=128.956;RPR=16;RUN=1;SAF=16;SAP=37.7539;SAR=0;SRF=58;SRP=128.956;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|0:41:38,0,3:38:1418:0,3:0,122:0,-11.4391,-127.49,-0.969737,-117.425,-116.522 1|0:9:2,5,2:2:76:5,2:200,81:-16.3411,-0.471478,-5.18642,-10.2626,0,-15.8873 0|1:32:18,11,3:18:674:11,3:442,113:-31.0242,0,-51.8827,-27.1895,-45.9352,-81.4655 dDocent_Contig_6525 109 . T C 327.712 . AB=0.3125;ABP=42.0968;AC=3;AF=0.5;AN=6;AO=40;CIGAR=1X;DP=128;DPB=128;DPRA=0;EPP=89.8692;EPPR=194.1;GTI=0;LEN=1;MEANALT=1;MQM=23.275;MQMR=54.9205;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=1341;QR=3022;RO=88;RPL=0;RPP=89.8692;RPPR=194.1;RPR=40;RUN=1;SAF=0;SAP=89.8692;SAR=40;SRF=0;SRP=194.1;SRR=88;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:46:29,17:29:987:17:571:-24.6036,0,-74.8546 0/1:25:13,12:13:447:12:396:-8.91426,0,-32.86 0/1:57:46,11:46:1588:11:374:-4.77597,0,-125.753 dDocent_Contig_6526 16 . G A 49.0546 . AB=0.25;ABP=29.068;AC=2;AF=0.333334;AN=6;AO=12;CIGAR=1X4M;DP=49;DPB=49;DPRA=24;EPP=29.068;EPPR=74.6689;GTI=0;LEN=1;MEANALT=1.5;MQM=18.25;MQMR=60;NS=3;NUMALT=2;ODDS=3.46945e-18;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=219;QR=1248;RO=33;RPL=0;RPP=29.068;RPPR=74.6689;RPR=12;RUN=1;SAF=12;SAP=29.068;SAR=0;SRF=33;SRP=74.6689;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|1:36:26,4,6:26:990:4,6:156,125:-4.99585,0,-80.1621,-5.11998,-73.5761,-84.5099 0|0:1:1,0,0:1:40:0,0:0,0:0,-0.30103,-3.99568,-0.30103,-3.99568,-3.99568 0|1:12:6,0,6:6:218:0,6:0,94:-3.42547,-5.23165,-23.1481,0,-18.162,-16.3558 dDocent_Contig_6527 42 . C T 81.2276 . AB=0.208333;ABP=20.744;AC=2;AF=0.333333;AN=6;AO=5;CIGAR=1X;DP=35;DPB=35;DPRA=1.09091;EPP=13.8677;EPPR=68.1545;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=0;PAIREDR=0.533333;PAO=0;PQA=0;PQR=0;PRO=0;QA=201;QR=1189;RO=30;RPL=0;RPP=13.8677;RPPR=68.1545;RPR=5;RUN=1;SAF=5;SAP=13.8677;SAR=0;SRF=30;SRP=68.1545;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:15:12,3:12:469:3:122:-6.85704,0,-38.0375 0/1:9:7,2:7:275:2:79:-4.78836,0,-22.4066 0/0:11:11,0:11:445:0:0:0,-3.31133,-40.4055 dDocent_Contig_6529 136 . G A 63.049 . AB=0.25;ABP=11.6962;AC=1;AF=0.166667;AN=6;AO=4;CIGAR=1X;DP=34;DPB=34;DPRA=1.77778;EPP=11.6962;EPPR=68.1545;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=140;QR=1031;RO=30;RPL=0;RPP=11.6962;RPPR=68.1545;RPR=4;RUN=1;SAF=0;SAP=11.6962;SAR=4;SRF=0;SRP=68.1545;SRR=30;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:16:16,0:16:561:0:0:0,-4.81648,-50.8194 0/0:2:2,0:2:70:0:0:0,-0.60206,-6.6474 0/1:16:12,4:12:400:4:140:-8.12845,0,-31.5053 dDocent_Contig_6531 156 . T G 165.024 . AB=0.25;ABP=20.3821;AC=2;AF=0.333333;AN=6;AO=8;CIGAR=1X;DP=41;DPB=41;DPRA=1.77778;EPP=20.3821;EPPR=74.6689;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=321;QR=1256;RO=33;RPL=0;RPP=20.3821;RPPR=74.6689;RPR=8;RUN=1;SAF=0;SAP=20.3821;SAR=8;SRF=0;SRP=74.6689;SRR=33;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:23:17,6:17:671:6:241:-15.1426,0,-53.8 0/0:9:9,0:9:338:0:0:0,-2.70927,-30.7706 0/1:9:7,2:7:247:2:80:-4.88252,0,-19.8515 dDocent_Contig_6532 33 . C A 63.2956 . AB=0.272727;ABP=7.94546;AC=1;AF=0.166667;AN=6;AO=3;CIGAR=1X;DP=27;DPB=27;DPRA=1.375;EPP=9.52472;EPPR=55.1256;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=123;QR=954;RO=24;RPL=0;RPP=9.52472;RPPR=55.1256;RPR=3;RUN=1;SAF=3;SAP=9.52472;SAR=0;SRF=24;SRP=55.1256;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:9:9,0:9:360:0:0:0,-2.70927,-32.7627 0/1:11:8,3:8:321:3:123:-8.15346,0,-25.9457 0/0:7:7,0:7:273:0:0:0,-2.10721,-24.9343 dDocent_Contig_6533 136 . T A 36.5383 . AB=0.153846;ABP=30.0702;AC=2;AF=0.333333;AN=6;AO=4;CIGAR=1X;DP=33;DPB=33;DPRA=1.85714;EPP=11.6962;EPPR=65.983;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=158;QR=1124;RO=29;RPL=0;RPP=11.6962;RPPR=65.983;RPR=4;RUN=1;SAF=0;SAP=11.6962;SAR=4;SRF=0;SRP=65.983;SRR=29;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:14:12,2:12:474:2:80:-3.37716,0,-38.7949 0/1:12:10,2:10:387:2:78:-3.79111,0,-31.5713 0/0:7:7,0:7:263:0:0:0,-2.10721,-24.0231 dDocent_Contig_6535 67 . A C 95.1915 . AB=0.277778;ABP=10.7311;AC=1;AF=0.166667;AN=6;AO=5;CIGAR=1X;DP=33;DPB=33;DPRA=2.4;EPP=13.8677;EPPR=63.8115;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=179;QR=972;RO=28;RPL=5;RPP=13.8677;RPPR=63.8115;RPR=0;RUN=1;SAF=5;SAP=13.8677;SAR=0;SRF=28;SRP=63.8115;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:18:13,5:13:450:5:179:-11.0419,0,-35.4112 0/0:3:3,0:3:103:0:0:0,-0.90309,-9.6096 0/0:12:12,0:12:419:0:0:0,-3.61236,-38.0435 dDocent_Contig_6536 91 . G A 129.754 . AB=0.243243;ABP=24.1968;AC=2;AF=0.5;AN=4;AO=9;CIGAR=1X;DP=37;DPB=37;DPRA=0;EPP=22.5536;EPPR=63.8115;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=2;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=301;QR=908;RO=28;RPL=9;RPP=22.5536;RPPR=63.8115;RPR=0;RUN=1;SAF=9;SAP=22.5536;SAR=0;SRF=28;SRP=63.8115;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:24:17,7:17:567:7:233:-14.0718,0,-44.1227 ./.:.:.:.:.:.:.:. 0/1:13:11,2:11:341:2:68:-2.54454,0,-27.0783 dDocent_Contig_6537 6 . C T 253.746 . AB=0.4;ABP=3.44459;AC=1;AF=0.166667;AN=6;AO=2;CIGAR=1X4I3M2I1M1X1M;DP=13;DPB=27.7143;DPRA=1.25;EPP=7.35324;EPPR=0;GTI=0;LEN=1;MEANALT=3;MQM=60;MQMR=0;NS=3;NUMALT=2;ODDS=0;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=244;PRO=7;QA=70;QR=0;RO=0;RPL=0;RPP=7.35324;RPPR=0;RPR=2;RUN=1;SAF=2;SAP=7.35324;SAR=0;SRF=0;SRP=0;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 1|0:5:0,2,2:0:0:2,2:70,70:-11.3909,-5.69547,-5.09341,-5.6954,0,-5.09334 0|0:3:0,0,1:0:0:0,1:0,35:-3.14744,-3.14744,-3.14744,-0.30103,-0.30103,0 0|0:5:0,0,4:0:0:0,4:0,138:-12.3571,-12.3571,-12.3571,-1.20412,-1.20412,0 dDocent_Contig_6538 54 . T C 181.432 . AB=0.44;ABP=3.79203;AC=2;AF=0.333333;AN=6;AO=11;CIGAR=1X;DP=32;DPB=32;DPRA=1.78571;EPP=4.78696;EPPR=48.6112;GTI=0;LEN=1;MEANALT=1;MQM=41.8182;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=0.636364;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=438;QR=855;RO=21;RPL=11;RPP=26.8965;RPPR=48.6112;RPR=0;RUN=1;SAF=7;SAP=4.78696;SAR=4;SRF=21;SRP=48.6112;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:20:13,7:13:530:7:282:-14.2538,0,-42.026 0/1:5:1,4:1:40:4:156:-7.36781,0,-2.49053 0/0:7:7,0:7:285:0:0:0,-2.10721,-26.0244 dDocent_Contig_6539 12 . A C 147.572 . AB=0.189655;ABP=51.5315;AC=2;AF=0.333333;AN=6;AO=11;CIGAR=1M3D2M1X;DP=60;DPB=55.2857;DPRA=14.5;EPP=26.8965;EPPR=109.412;GTI=0;LEN=1;MEANALT=1;MQM=51;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=0.727273;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=420;QR=1873;RO=49;RPL=0;RPP=26.8965;RPPR=109.412;RPR=11;RUN=1;SAF=11;SAP=26.8965;SAR=0;SRF=49;SRP=109.412;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|1:39:31,8:31:1183:8:311:-15.4981,0,-95.026 0|0:2:2,0:2:77:0:0:0,-0.60206,-7.30914 0|1:19:16,3:16:613:3:109:-2.75705,0,-49.7886 dDocent_Contig_6540 22 . C A 454.697 . AB=0.388889;ABP=6.8707;AC=4;AF=0.666667;AN=6;AO=16;CIGAR=1X;DP=38;DPB=38;DPRA=0;EPP=37.7539;EPPR=50.7827;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=652;QR=873;RO=22;RPL=0;RPP=37.7539;RPPR=50.7827;RPR=16;RUN=1;SAF=16;SAP=37.7539;SAR=0;SRF=22;SRP=50.7827;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:23:14,9:14:552:9:365:-26.291,0,-43.0946 1/1:2:0,2:0:0:2:82:-7.77968,-0.60206,0 0/1:13:8,5:8:321:5:205:-14.9216,0,-25.344 dDocent_Contig_6542 13 . A G 32.3516 . AB=0.107143;ABP=78.0812;AC=2;AF=0.333333;AN=6;AO=6;CIGAR=1X;DP=69;DPB=69;DPRA=2.15385;EPP=16.0391;EPPR=139.813;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=243;QR=2529;RO=63;RPL=0;RPP=16.0391;RPPR=139.813;RPR=6;RUN=1;SAF=6;SAP=16.0391;SAR=0;SRF=63;SRP=139.813;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:35:32,3:32:1284:3:121:-0.743936,0,-105.291 0/0:13:13,0:13:525:0:0:0,-3.91339,-47.5976 0/1:21:18,3:18:720:3:122:-5.05086,0,-58.8011 dDocent_Contig_6543 20 . A T 1539.36 . AB=0.256881;ABP=58.9705;AC=1;AF=0.166667;AN=6;AO=28;CIGAR=1X2M1X;DP=109;DPB=109;DPRA=0;EPP=63.8115;EPPR=72.4974;GTI=0;LEN=1;MEANALT=2;MQM=60;MQMR=60;NS=3;NUMALT=2;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=1113;QR=1256;RO=32;RPL=0;RPP=63.8115;RPPR=72.4974;RPR=28;RUN=1;SAF=28;SAP=63.8115;SAR=0;SRF=32;SRP=72.4974;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|0:77:25,19,33:25:981:19,33:769,1337:-102.722,-46.8408,-121.794,0,-17.2589,-70.737 1|0:5:1,3,1:1:40:3,1:121,41:-9.76716,-0.098888,-2.48593,-6.68246,0,-9.67568 0|0:27:6,6,15:6:235:6,15:223,591:-46.8241,-30.3917,-47.9077,0,-1.09784,-14.8173 dDocent_Contig_6544 14 . G A 52.1508 . AB=0.15;ABP=45.5712;AC=3;AF=0.5;AN=6;AO=6;CIGAR=1M1I7M1X3M1X;DP=57;DPB=57.6154;DPRA=0;EPP=16.0391;EPPR=109.412;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=2;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=221;QR=1931;RO=49;RPL=0;RPP=16.0391;RPPR=109.412;RPR=6;RUN=1;SAF=6;SAP=16.0391;SAR=0;SRF=49;SRP=109.412;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|1:34:29,0,5:29:1151:0,5:0,182:-6.49807,-15.2279,-110.01,0,-95.1509,-93.6457 0|1:6:5,0,1:5:197:0,1:0,39:-2.09038,-3.59553,-19.8066,0,-16.6014,-16.3004 0|1:17:15,2,0:15:583:2,0:71,0:-1.62357,0,-47.6932,-6.13902,-48.2953,-54.0756 dDocent_Contig_6545 7 . T A 7913.63 . AB=0;ABP=0;AC=0;AF=0;AN=6;AO=15;CIGAR=1X2M1X;DP=280;DPB=280;DPRA=0;EPP=35.5824;EPPR=48.6112;GTI=0;LEN=1;MEANALT=2;MQM=60;MQMR=60;NS=3;NUMALT=2;ODDS=0;PAIRED=1;PAIREDR=0.857143;PAO=0;PQA=0;PQR=0;PRO=0;QA=577;QR=804;RO=21;RPL=0;RPP=35.5824;RPPR=48.6112;RPR=15;RUN=1;SAF=15;SAP=35.5824;SAR=0;SRF=21;SRP=48.6112;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|0:130:7,10,113:7:269:10,113:384,4571:-373.933,-344.519,-363.592,-11.9333,-2.49547,0 0|0:69:8,0,61:8:306:0,61:0,2438:-195.339,-197.747,-222.855,0,-25.492,-7.12913 0|0:81:6,5,70:6:229:5,70:193,2799:-223.615,-209.57,-226.853,-2.28627,-5.21948,0 dDocent_Contig_6547 11 . T A 295.228 . AB=0.266667;ABP=24.2907;AC=2;AF=0.333333;AN=6;AO=12;CIGAR=5M1X5M;DP=49;DPB=48.0909;DPRA=5.625;EPP=29.068;EPPR=63.8115;GTI=0;LEN=1;MEANALT=3;MQM=60;MQMR=60;NS=3;NUMALT=4;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=488;QR=1101;RO=28;RPL=0;RPP=29.068;RPPR=63.8115;RPR=12;RUN=1;SAF=12;SAP=29.068;SAR=0;SRF=28;SRP=63.8115;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|1:26:15,4,1,6,0:15:595:4,1,6,0:155,39,244,0:-15.6211,-7.40847,-55.1794,-16.9315,-53.1781,-65.6093,0,-36.2542,-45.781,-47.1805,-20.1366,-56.3835,-65.9103,-48.9866,-69.1159 0|0:4:4,0,0,0,0:4:156:0,0,0,0:0,0,0,0:0,-1.20412,-14.4171,-1.20412,-14.4171,-14.4171,-1.20412,-14.4171,-14.4171,-14.4171,-1.20412,-14.4171,-14.4171,-14.4171,-14.4171 0|1:19:9,0,2,6,2:9:350:0,2,6,2:0,76,244,82:-17.4242,-20.1334,-48.8896,-13.9059,-42.6585,-42.0564,0,-28.7582,-22.5271,-26.952,-13.3633,-42.1198,-35.8887,-21.9866,-41.5178 dDocent_Contig_6548 18 . C T 145.383 . AB=0.291667;ABP=12.0581;AC=2;AF=0.333333;AN=6;AO=7;CIGAR=1X;DP=30;DPB=30;DPRA=2;EPP=18.2106;EPPR=52.9542;GTI=0;LEN=1;MEANALT=1;MQM=43.4286;MQMR=57.2609;NS=3;NUMALT=1;ODDS=0;PAIRED=0.142857;PAIREDR=0.73913;PAO=0;PQA=0;PQR=0;PRO=0;QA=272;QR=937;RO=23;RPL=0;RPP=18.2106;RPPR=52.9542;RPR=7;RUN=1;SAF=7;SAP=18.2106;SAR=0;SRF=23;SRP=52.9542;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:16:10,6:10:406:6:241:-16.0542,0,-32.0836 0/0:6:6,0:6:245:0:0:0,-1.80618,-22.4295 0/1:8:7,1:7:286:1:31:-0.688327,0,-22.6428 dDocent_Contig_6550 17 . T C 333.204 . AB=0.230769;ABP=27.5646;AC=2;AF=0.333333;AN=6;AO=9;CIGAR=1M1D1M1X2M9I2M;DP=39;DPB=56;DPRA=0;EPP=22.5536;EPPR=48.6112;GTI=0;LEN=1;MEANALT=2;MQM=60;MQMR=60;NS=3;NUMALT=2;ODDS=6.93889e-18;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=340;QR=816;RO=21;RPL=0;RPP=22.5536;RPPR=48.6112;RPR=9;RUN=1;SAF=9;SAP=22.5536;SAR=0;SRF=21;SRP=48.6112;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|0:14:6,2,6:6:235:2,6:67,233:-17.3789,-13.7746,-32.4985,0,-13.957,-17.5605 0|1:18:14,3,0:14:545:3,0:114,0:-5.16486,0,-43.9338,-9.37928,-44.8369,-54.1853 1|0:7:1,4,2:1:36:4,2:159,78:-16.2992,-3.50417,-5.22752,-10.191,0,-12.5189 dDocent_Contig_6551 7 . T A 543.31 . AB=0.525;ABP=3.22745;AC=3;AF=0.5;AN=6;AO=21;CIGAR=1X;DP=40;DPB=40;DPRA=0;EPP=48.6112;EPPR=44.2683;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=787;QR=714;RO=19;RPL=0;RPP=48.6112;RPPR=44.2683;RPR=21;RUN=1;SAF=21;SAP=48.6112;SAR=0;SRF=19;SRP=44.2683;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:12:5,7:5:189:7:261:-20.2315,0,-13.7629 0/1:12:6,6:6:223:6:217:-16.2659,0,-16.8156 0/1:16:8,8:8:302:8:309:-23.3565,0,-22.7188 dDocent_Contig_6552 160 . G T 381.312 . AB=0.157895;ABP=41.6397;AC=0;AF=0;AN=6;AO=6;CIGAR=1X2M1X;DP=55;DPB=55;DPRA=0;EPP=16.0391;EPPR=70.3259;GTI=0;LEN=1;MEANALT=3;MQM=60;MQMR=60;NS=3;NUMALT=2;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=243;QR=1220;RO=31;RPL=6;RPP=16.0391;RPPR=70.3259;RPR=0;RUN=1;SAF=0;SAP=16.0391;SAR=6;SRF=0;SRP=70.3259;SRR=31;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|0:38:20,6,11:20:789:6,11:243,420:-28.4291,-14.4028,-77.5261,0,-44.8798,-61.6089 0|0:5:3,0,2:3:118:0,2:0,80:-6.08642,-6.98951,-16.692,0,-10.0994,-9.49736 0|0:12:8,0,4:8:313:0,4:0,138:-9.13858,-11.5468,-37.312,0,-26.1252,-24.9211 dDocent_Contig_6553 95 . G A 463.222 . AB=0.362069;ABP=12.5947;AC=1;AF=0.25;AN=4;AO=21;CIGAR=1X;DP=68;DPB=68;DPRA=5.8;EPP=48.6112;EPPR=105.07;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=2;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=724;QR=1548;RO=47;RPL=21;RPP=48.6112;RPPR=105.07;RPR=0;RUN=1;SAF=21;SAP=48.6112;SAR=0;SRF=47;SRP=105.07;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:58:37,21:37:1232:21:724:-48.0212,0,-93.7166 ./.:.:.:.:.:.:.:. 0/0:10:10,0:10:316:0:0:0,-3.0103,-28.7468 dDocent_Contig_6554 43 . A G 31.7145 . AB=0.25;ABP=7.35324;AC=1;AF=0.166667;AN=6;AO=3;CIGAR=1X;DP=46;DPB=46;DPRA=2.05556;EPP=3.73412;EPPR=96.3836;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=0;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=118;QR=1701;RO=43;RPL=0;RPP=9.52472;RPPR=96.3836;RPR=3;RUN=1;SAF=1;SAP=3.73412;SAR=2;SRF=43;SRP=96.3836;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:29:28,1:28:1115:1:40:0,-4.73419,-96.6413 0/1:8:6,2:6:245:2:78:-4.99506,0,-20.0212 0/0:9:9,0:9:341:0:0:0,-2.70927,-31.0418 dDocent_Contig_6555 18 . A T 137.279 . AB=0.5;ABP=3.0103;AC=1;AF=0.166667;AN=6;AO=5;CIGAR=1X;DP=60;DPB=60;DPRA=0.4;EPP=13.8677;EPPR=122.441;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=202;QR=2176;RO=55;RPL=0;RPP=13.8677;RPPR=122.441;RPR=5;RUN=1;SAF=5;SAP=13.8677;SAR=0;SRF=55;SRP=122.441;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:37:37,0:37:1458:0:0:0,-11.1381,-131.475 0/1:10:5,5:5:198:5:202:-15.5518,0,-15.1871 0/0:13:13,0:13:520:0:0:0,-3.91339,-47.1472 dDocent_Contig_6557 10 . T A 1218.94 . AB=0.246575;ABP=43.7328;AC=2;AF=0.333333;AN=6;AO=18;CIGAR=1X2M1X1M1X;DP=73;DPB=73;DPRA=0;EPP=42.0968;EPPR=42.0968;GTI=0;LEN=1;MEANALT=2;MQM=60;MQMR=60;NS=3;NUMALT=2;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=704;QR=710;RO=18;RPL=0;RPP=42.0968;RPPR=42.0968;RPR=18;RUN=1;SAF=18;SAP=42.0968;SAR=0;SRF=18;SRP=42.0968;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 1|0:45:8,10,27:8:312:10,27:390,1055:-90.7242,-61.0774,-83.7134,-6.40882,0,-23.9274 0|0:7:1,1,5:1:39:1,5:39,202:-16.3637,-13.4612,-16.3637,0,-1.73718e-08,-1.70073 0|1:21:9,7,5:9:359:7,5:275,201:-19.9041,0,-27.4573,-6.04523,-12.999,-34.11 dDocent_Contig_6558 109 . C T 45.6405 . AB=0.266667;ABP=10.1038;AC=1;AF=0.166667;AN=6;AO=4;CIGAR=1X;DP=43;DPB=43;DPRA=1.07143;EPP=11.6962;EPPR=87.6977;GTI=0;LEN=1;MEANALT=1;MQM=31;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=0;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=139;QR=1344;RO=39;RPL=0;RPP=11.6962;RPPR=87.6977;RPR=4;RUN=1;SAF=0;SAP=11.6962;SAR=4;SRF=0;SRP=87.6977;SRR=39;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:24:24,0:24:829:0:0:0,-7.22472,-74.9279 0/1:15:11,4:11:377:4:139:-6.38785,0,-29.7453 0/0:4:4,0:4:138:0:0:0,-1.20412,-12.7604 dDocent_Contig_6559 74 . T A 706.995 . AB=0.174528;ABP=198.074;AC=3;AF=0.5;AN=6;AO=37;CIGAR=1X1M;DP=224;DPB=224;DPRA=0;EPP=83.3548;EPPR=354.789;GTI=0;LEN=1;MEANALT=2.5;MQM=60;MQMR=60;NS=3;NUMALT=2;ODDS=0;PAIRED=1;PAIREDR=0.969136;PAO=0;PQA=0;PQR=0;PRO=0;QA=1403;QR=6039;RO=162;RPL=37;RPP=83.3548;RPPR=354.789;RPR=0;RUN=1;SAF=37;SAP=83.3548;SAR=0;SRF=162;SRP=354.789;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|1:147:105,14,27:105:3941:14,27:518,1034:-53.2572,-42.4935,-361.108,0,-280.464,-314.711 0|1:12:9,3,0:9:350:3,0:116,0:-7.20534,0,-28.249,-9.91461,-29.1521,-38.6798 0|1:65:48,7,10:48:1748:7,10:224,369:-15.7599,-12.1855,-152.857,0,-124.782,-139.811 dDocent_Contig_6560 72 . T C 167.138 . AB=0.189655;ABP=51.5315;AC=2;AF=0.333333;AN=6;AO=19;CIGAR=1X;DP=185;DPB=185;DPRA=0;EPP=44.2683;EPPR=363.475;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=6.93889e-18;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=720;QR=6305;RO=166;RPL=19;RPP=44.2683;RPPR=363.475;RPR=0;RUN=1;SAF=19;SAP=44.2683;SAR=0;SRF=166;SRP=363.475;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:127:119,8:119:4511:8:309:0,-10.0587,-377.843 0/1:19:16,3:16:597:3:105:-4.07576,0,-48.3353 0/1:39:31,8:31:1197:8:306:-16.1597,0,-96.2761 dDocent_Contig_6561 26 . A G 62.3122 . AB=0.127273;ABP=69.3784;AC=2;AF=0.333333;AN=6;AO=7;CIGAR=1X;DP=153;DPB=153;DPRA=0.280612;EPP=18.2106;EPPR=320.045;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=283;QR=5769;RO=146;RPL=0;RPP=18.2106;RPPR=320.045;RPR=7;RUN=1;SAF=7;SAP=18.2106;SAR=0;SRF=146;SRP=320.045;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:98:98,0:98:3864:0:0:0,-29.5009,-347.763 0/1:13:10,3:10:403:3:121:-7.36681,0,-32.7141 0/1:42:38,4:38:1502:4:162:-2.32349,0,-122.775 dDocent_Contig_6562 61 . A C 59.3641 . AB=0.230769;ABP=11.1951;AC=1;AF=0.166667;AN=6;AO=3;CIGAR=1X;DP=28;DPB=28;DPRA=1.73333;EPP=9.52472;EPPR=57.2971;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=122;QR=1005;RO=25;RPL=3;RPP=9.52472;RPPR=57.2971;RPR=0;RUN=1;SAF=3;SAP=9.52472;SAR=0;SRF=25;SRP=57.2971;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:13:10,3:10:405:3:122:-7.4591,0,-32.8967 0/0:3:3,0:3:123:0:0:0,-0.90309,-11.4648 0/0:12:12,0:12:477:0:0:0,-3.61236,-43.2817 dDocent_Contig_6565 11 . G A 86.841 . AB=0.15;ABP=45.5712;AC=1;AF=0.166667;AN=6;AO=6;CIGAR=1X;DP=79;DPB=79;DPRA=2.05128;EPP=16.0391;EPPR=161.528;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=59.7534;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=0.945205;PAO=0;PQA=0;PQR=0;PRO=0;QA=243;QR=2917;RO=73;RPL=0;RPP=16.0391;RPPR=161.528;RPR=6;RUN=1;SAF=6;SAP=16.0391;SAR=0;SRF=73;SRP=161.528;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:40:34,6:34:1348:6:243:-10.207,0,-109.469 0/0:16:16,0:16:642:0:0:0,-4.81648,-58.1127 0/0:23:23,0:23:927:0:0:0,-6.92369,-83.7331 dDocent_Contig_6566 60 . A T 1068.55 . AB=0.27673;ABP=71.8555;AC=3;AF=0.5;AN=6;AO=44;CIGAR=1X;DP=159;DPB=159;DPRA=0;EPP=98.5551;EPPR=252.73;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=1769;QR=4578;RO=115;RPL=44;RPP=98.5551;RPPR=252.73;RPR=0;RUN=1;SAF=44;SAP=98.5551;SAR=0;SRF=115;SRP=252.73;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:108:73,35:73:2908:35:1407:-94.3697,0,-229.313 0/1:11:6,5:6:227:5:199:-14.9772,0,-17.4764 0/1:40:36,4:36:1443:4:163:-3.01723,0,-118.08 dDocent_Contig_6567 19 . G A 1027.8 . AB=0.59322;ABP=7.46366;AC=3;AF=0.5;AN=6;AO=35;CIGAR=1X;DP=59;DPB=59;DPRA=0;EPP=79.0118;EPPR=55.1256;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=1389;QR=954;RO=24;RPL=0;RPP=79.0118;RPPR=55.1256;RPR=35;RUN=1;SAF=35;SAP=79.0118;SAR=0;SRF=24;SRP=55.1256;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:38:11,27:11:428:27:1074:-85.5098,0,-27.4267 0/1:6:4,2:4:162:2:81:-5.87955,0,-13.1608 0/1:15:9,6:9:364:6:234:-16.9132,0,-28.6091 dDocent_Contig_6569 24 . G A 230.191 . AB=0.24;ABP=32.3686;AC=3;AF=0.5;AN=6;AO=12;CIGAR=1X;DP=50;DPB=50;DPRA=0;EPP=29.068;EPPR=85.5263;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=471;QR=1512;RO=38;RPL=0;RPP=29.068;RPPR=85.5263;RPR=12;RUN=1;SAF=12;SAP=29.068;SAR=0;SRF=38;SRP=85.5263;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:17:14,3:14:559:3:120:-6.0698,0,-45.5326 0/1:17:10,7:10:396:7:277:-20.1823,0,-30.8785 0/1:16:14,2:14:557:2:74:-2.20838,0,-45.6472 dDocent_Contig_6570 35 . C G 98.6851 . AB=0.238095;ABP=15.5221;AC=1;AF=0.166667;AN=6;AO=6;CIGAR=1X;DP=61;DPB=61;DPRA=3.85714;EPP=16.0391;EPPR=122.441;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=237;QR=2197;RO=55;RPL=0;RPP=16.0391;RPPR=122.441;RPR=6;RUN=1;SAF=6;SAP=16.0391;SAR=0;SRF=55;SRP=122.441;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:33:32,1:32:1291:1:41:0,-5.83942,-112.358 0/0:7:7,0:7:275:0:0:0,-2.10721,-25.1137 0/1:21:16,5:16:631:5:196:-11.6924,0,-50.8025 dDocent_Contig_6571 11 . G A 139.462 . AB=0.352941;ABP=6.20364;AC=2;AF=0.333333;AN=6;AO=6;CIGAR=1X;DP=28;DPB=28;DPRA=0.772727;EPP=16.0391;EPPR=50.7827;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=1.73472e-18;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=233;QR=881;RO=22;RPL=0;RPP=16.0391;RPPR=50.7827;RPR=6;RUN=1;SAF=6;SAP=16.0391;SAR=0;SRF=22;SRP=50.7827;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:8:7,1:7:280:1:32:-0.791073,0,-23.1624 0/1:9:4,5:4:163:5:201:-15.7612,0,-12.3492 0/0:11:11,0:11:438:0:0:0,-3.31133,-39.7704 dDocent_Contig_6572 41 . A G 72.6544 . AB=0.222222;ABP=15.074;AC=1;AF=0.166667;AN=6;AO=4;CIGAR=1X;DP=79;DPB=79;DPRA=0.590164;EPP=11.6962;EPPR=165.871;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=157;QR=3023;RO=75;RPL=0;RPP=11.6962;RPPR=165.871;RPR=4;RUN=1;SAF=4;SAP=11.6962;SAR=0;SRF=75;SRP=165.871;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:47:47,0:47:1888:0:0:0,-14.1484,-170.12 0/0:14:14,0:14:567:0:0:0,-4.21442,-51.3729 0/1:18:14,4:14:568:4:157:-9.08935,0,-46.0434 dDocent_Contig_6573 38 . T C 2543.49 . AB=0.0714286;ABP=70.0157;AC=0;AF=0;AN=6;AO=3;CIGAR=1X1M4X;DP=114;DPB=114;DPRA=0;EPP=9.52472;EPPR=46.4397;GTI=0;LEN=1;MEANALT=3;MQM=27;MQMR=60;NS=3;NUMALT=3;ODDS=0;PAIRED=0;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=118;QR=749;RO=20;RPL=0;RPP=9.52472;RPPR=46.4397;RPR=3;RUN=1;SAF=3;SAP=9.52472;SAR=0;SRF=20;SRP=46.4397;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|0:60:9,3,0,48:9:342:3,0,48:95,0,1782:-143.177,-138.798,-165.944,-145.886,-166.847,-173.935,0,-21.0391,-28.11,-13.6605 0|0:12:2,0,0,10:2:78:0,0,10:0,0,380:-30.9395,-31.5416,-37.955,-31.5416,-37.955,-37.955,0,-6.80141,-6.80141,-3.79111 0|0:42:9,1,3,29:9:329:1,3,29:39,118,1080:-85.7533,-85.2902,-111.872,-82.1532,-105.862,-108.131,0,-23.7543,-20.6336,-18.1996 dDocent_Contig_6574 81 . T C 261.037 . AB=0.254237;ABP=33.963;AC=2;AF=0.333333;AN=6;AO=15;CIGAR=1X;DP=62;DPB=62;DPRA=9.83333;EPP=35.5824;EPPR=105.07;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=3.46945e-18;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=519;QR=1625;RO=47;RPL=15;RPP=35.5824;RPPR=105.07;RPR=0;RUN=1;SAF=15;SAP=35.5824;SAR=0;SRF=47;SRP=105.07;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:46:34,12:34:1182:12:414:-23.7436,0,-92.8399 0/0:3:3,0:3:105:0:0:0,-0.90309,-9.79616 0/1:13:10,3:10:338:3:105:-5.88277,0,-26.8338 dDocent_Contig_6575 9 . T A 79.1083 . AB=0.75;ABP=5.18177;AC=1;AF=0.166667;AN=6;AO=3;CIGAR=1X;DP=34;DPB=34;DPRA=0.266667;EPP=9.52472;EPPR=70.3259;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=0;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=117;QR=1193;RO=31;RPL=0;RPP=9.52472;RPPR=70.3259;RPR=3;RUN=1;SAF=3;SAP=9.52472;SAR=0;SRF=31;SRP=70.3259;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:25:25,0:25:959:0:0:0,-7.52575,-86.6223 0/0:5:5,0:5:195:0:0:0,-1.50515,-17.9242 0/1:4:1,3:1:39:3:117:-9.70626,0,-2.69244 dDocent_Contig_6576 14 . T A 283.378 . AB=0.363636;ABP=8.34028;AC=3;AF=0.5;AN=6;AO=12;CIGAR=1X;DP=33;DPB=33;DPRA=0;EPP=29.068;EPPR=48.6112;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=474;QR=830;RO=21;RPL=0;RPP=29.068;RPPR=48.6112;RPR=12;RUN=1;SAF=12;SAP=29.068;SAR=0;SRF=21;SRP=48.6112;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:12:7,5:7:280:5:204:-15.1317,0,-21.9583 0/1:8:4,4:4:152:4:151:-11.5474,0,-11.6389 0/1:13:10,3:10:398:3:119:-7.18162,0,-32.2639 dDocent_Contig_6577 8 . T A 852.794 . AB=0.0569106;ABP=212.76;AC=0;AF=0;AN=6;AO=7;CIGAR=1X3M1X;DP=123;DPB=123;DPRA=0;EPP=18.2106;EPPR=168.151;GTI=0;LEN=1;MEANALT=2.33333;MQM=60;MQMR=60;NS=3;NUMALT=2;ODDS=0;PAIRED=1;PAIREDR=0.975;PAO=0;PQA=0;PQR=0;PRO=0;QA=278;QR=3105;RO=80;RPL=0;RPP=18.2106;RPPR=176.728;RPR=7;RUN=1;SAF=7;SAP=18.2106;SAR=0;SRF=79;SRP=168.151;SRR=1;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|0:46:34,3,8:34:1314:3,8:120,324:-16.4899,-16.8399,-123.844,0,-98.0274,-105.506 0|0:35:18,2,15:18:701:2,15:79,601:-44.0992,-43.0174,-100.023,0,-51.107,-53.0931 0|0:42:28,2,12:28:1090:2,12:79,470:-30.2132,-32.1406,-121.116,0,-83.0727,-85.9617 dDocent_Contig_6578 107 . N C 66.4841 . AB=0;ABP=0;AC=2;AF=1;AN=2;AO=2;CIGAR=1X;DP=2;DPB=2;DPRA=0;EPP=7.35324;EPPR=0;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=0;NS=1;NUMALT=1;ODDS=5.99146;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=70;QR=0;RO=0;RPL=0;RPP=7.35324;RPPR=0;RPR=2;RUN=1;SAF=0;SAP=7.35324;SAR=2;SRF=0;SRP=0;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL ./.:.:.:.:.:.:.:. ./.:.:.:.:.:.:.:. 1/1:2:0,2:0:0:2:70:-6.64733,-0.60206,0 dDocent_Contig_6579 48 . A G 78.6221 . AB=0;ABP=0;AC=2;AF=0.333333;AN=6;AO=2;CIGAR=1X;DP=21;DPB=21;DPRA=0.210526;EPP=7.35324;EPPR=44.2683;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=81;QR=748;RO=19;RPL=0;RPP=7.35324;RPPR=44.2683;RPR=2;RUN=1;SAF=2;SAP=7.35324;SAR=0;SRF=19;SRP=44.2683;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:13:13,0:13:517:0:0:0,-3.91339,-46.8758 1/1:2:0,2:0:0:2:81:-7.68573,-0.60206,0 0/0:6:6,0:6:231:0:0:0,-1.80618,-21.1548 dDocent_Contig_6580 10 . T A 6009.6 . AB=0.323221;ABP=235.637;AC=3;AF=0.5;AN=6;AO=277;CIGAR=1X;DP=857;DPB=857;DPRA=0;EPP=604.508;EPPR=1260.29;GTI=0;LEN=1;MEANALT=1.33333;MQM=46.5993;MQMR=45.8981;NS=3;NUMALT=1;ODDS=0;PAIRED=0.99639;PAIREDR=0.993092;PAO=0;PQA=0;PQR=0;PRO=0;QA=11049;QR=23232;RO=579;RPL=0;RPP=604.508;RPPR=1260.29;RPR=277;RUN=1;SAF=277;SAP=604.508;SAR=0;SRF=579;SRP=1260.29;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:475:324,151:324:12954:151:6018:-324.213,0,-874.165 0/1:90:60,30:60:2424:30:1195:-75.3846,0,-171.612 0/1:292:195,96:195:7854:96:3836:-206.885,0,-520.074 dDocent_Contig_6581 12 . C T 236.155 . AB=0.0754717;ABP=85.9769;AC=0;AF=0;AN=6;AO=14;CIGAR=6M1X;DP=521;DPB=517;DPRA=0;EPP=33.4109;EPPR=975.83;GTI=0;LEN=1;MEANALT=5.66667;MQM=48.9286;MQMR=54.9621;NS=3;NUMALT=2;ODDS=2.77556e-17;PAIRED=1;PAIREDR=0.975446;PAO=0;PQA=0;PQR=0;PRO=0;QA=545;QR=17257;RO=448;RPL=0;RPP=33.4109;RPPR=975.83;RPR=14;RUN=1;SAF=14;SAP=33.4109;SAR=0;SRF=448;SRP=975.83;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|0:292:265,12,6:265:10194:12,6:438,232:0,-43.9203,-834.697,-60.9142,-819.481,-853.456 0|0:53:34,12,4:34:1311:12,4:437,157:-25.4394,0,-96.1395,-23.1115,-87.1892,-121.678 0|0:176:149,4,4:149:5752:4,4:140,156:0,-33.4585,-486.95,-32.1322,-475.444,-485.63 dDocent_Contig_6582 31 . C A 63.204 . AB=0.147059;ABP=39.7976;AC=1;AF=0.166667;AN=6;AO=5;CIGAR=1X;DP=98;DPB=98;DPRA=1.0625;EPP=13.8677;EPPR=204.957;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=0.989247;PAO=0;PQA=0;PQR=0;PRO=0;QA=200;QR=3651;RO=93;RPL=0;RPP=13.8677;RPPR=204.957;RPR=5;RUN=1;SAF=5;SAP=13.8677;SAR=0;SRF=93;SRP=204.957;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:45:45,0:45:1762:0:0:0,-13.5463,-158.79 0/0:19:19,0:19:738:0:0:0,-5.71957,-66.7436 0/1:34:29,5:29:1151:5:200:-8.14431,0,-93.6378 dDocent_Contig_6583 46 . A G 160.086 . AB=0.384615;ABP=4.51363;AC=3;AF=0.5;AN=6;AO=6;CIGAR=1X;DP=20;DPB=20;DPRA=1.16667;EPP=16.0391;EPPR=33.4109;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=231;QR=564;RO=14;RPL=0;RPP=16.0391;RPPR=33.4109;RPR=6;RUN=1;SAF=6;SAP=16.0391;SAR=0;SRF=14;SRP=33.4109;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:13:8,5:8:324:5:204:-14.8306,0,-25.6158 0/0:6:6,0:6:240:0:0:0,-1.80618,-21.9757 1/1:1:0,1:0:0:1:27:-2.69978,-0.30103,0 dDocent_Contig_6584 114 . C G 100.523 . AB=0.666667;ABP=4.45795;AC=1;AF=0.166667;AN=6;AO=6;CIGAR=1X;DP=44;DPB=44;DPRA=1.33333;EPP=16.0391;EPPR=85.5263;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=221;QR=1333;RO=38;RPL=0;RPP=16.0391;RPPR=85.5263;RPR=6;RUN=1;SAF=0;SAP=16.0391;SAR=6;SRF=0;SRP=85.5263;SRR=38;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:26:24,2:24:842:2:73:0,-0.895481,-69.168 0/0:12:12,0:12:422:0:0:0,-3.61236,-38.3159 0/1:6:2,4:2:69:4:148:-11.8758,0,-4.74648 dDocent_Contig_6585 32 . C T 1058.21 . AB=0.393939;ABP=12.6832;AC=2;AF=0.333333;AN=6;AO=39;CIGAR=1X;DP=103;DPB=103;DPRA=12.375;EPP=87.6977;EPPR=141.985;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=1539;QR=2556;RO=64;RPL=0;RPP=87.6977;RPPR=141.985;RPR=39;RUN=1;SAF=39;SAP=87.6977;SAR=0;SRF=64;SRP=141.985;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:75:45,30:45:1824:30:1175:-83.4438,0,-141.786 0/0:4:4,0:4:153:0:0:0,-1.20412,-14.1388 0/1:24:15,9:15:579:9:364:-25.9,0,-45.2117 dDocent_Contig_6586 16 . A T 7135.89 . AB=0.66289;ABP=84.3636;AC=3;AF=0.5;AN=6;AO=234;CIGAR=1X;DP=353;DPB=353;DPRA=0;EPP=511.135;EPPR=261.416;GTI=0;LEN=1;MEANALT=1;MQM=51.4402;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=0.991597;PAO=0;PQA=0;PQR=0;PRO=0;QA=9327;QR=4731;RO=119;RPL=0;RPP=511.135;RPPR=261.416;RPR=234;RUN=1;SAF=234;SAP=511.135;SAR=0;SRF=119;SRP=261.416;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:179:57,122:57:2257:122:4874:-378.004,0,-149.408 0/1:60:21,39:21:830:39:1549:-119.611,0,-56.9529 0/1:114:41,73:41:1644:73:2904:-221.498,0,-113.865 dDocent_Contig_6587 72 . T A 334.261 . AB=0.304348;ABP=18.305;AC=4;AF=0.666667;AN=6;AO=16;CIGAR=1M1X;DP=49;DPB=50;DPRA=0;EPP=37.7539;EPPR=63.8115;GTI=0;LEN=1;MEANALT=2.33333;MQM=60;MQMR=60;NS=3;NUMALT=2;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=552;QR=1030;RO=28;RPL=16;RPP=37.7539;RPPR=63.8115;RPR=0;RUN=1;SAF=16;SAP=37.7539;SAR=0;SRF=28;SRP=63.8115;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|1:20:9,2,8:9:325:2,8:78,271:-19.2338,-15.5221,-41.457,0,-20.1011,-24.1097 1|1:3:0,0,2:0:0:0,2:0,80:-7.20198,-7.20198,-7.20198,-0.60206,-0.60206,0 0|1:26:19,0,6:19:705:0,6:0,201:-10.5125,-16.232,-73.9373,0,-57.671,-55.8648 dDocent_Contig_6588 26 . A T 41.4973 . AB=0.285714;ABP=5.80219;AC=1;AF=0.166667;AN=6;AO=2;CIGAR=1X;DP=17;DPB=17;DPRA=1.4;EPP=7.35324;EPPR=35.5824;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=82;QR=597;RO=15;RPL=0;RPP=7.35324;RPPR=35.5824;RPR=2;RUN=1;SAF=2;SAP=7.35324;SAR=0;SRF=15;SRP=35.5824;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:7:5,2:5:202:2:82:-5.67247,0,-16.4543 0/0:4:4,0:4:152:0:0:0,-1.20412,-14.0463 0/0:6:6,0:6:243:0:0:0,-1.80618,-22.248 dDocent_Contig_6589 32 . T C 72.2931 . AB=0.157895;ABP=41.6397;AC=2;AF=0.333333;AN=6;AO=6;CIGAR=1X;DP=45;DPB=45;DPRA=2.71429;EPP=16.0391;EPPR=87.6977;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=238;QR=1542;RO=39;RPL=0;RPP=16.0391;RPPR=87.6977;RPR=6;RUN=1;SAF=6;SAP=16.0391;SAR=0;SRF=39;SRP=87.6977;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:7:7,0:7:278:0:0:0,-2.10721,-25.3892 0/1:12:9,3:9:357:3:115:-7.11085,0,-28.8771 0/1:26:23,3:23:907:3:123:-3.63801,0,-74.1049 dDocent_Contig_6591 11 . G A 270.659 . AB=0.266667;ABP=24.2907;AC=2;AF=0.333333;AN=6;AO=13;CIGAR=1X;DP=63;DPB=63;DPRA=0;EPP=31.2394;EPPR=111.584;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=3.46945e-18;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=519;QR=2015;RO=50;RPL=0;RPP=31.2394;RPPR=111.584;RPR=13;RUN=1;SAF=13;SAP=31.2394;SAR=0;SRF=50;SRP=111.584;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:35:25,10:25:1014:10:401:-25.913,0,-81.0167 0/1:10:8,2:8:321:2:81:-4.67543,0,-26.2476 0/0:18:17,1:17:680:1:37:0,-1.72071,-57.8323 dDocent_Contig_6592 107 . N G 129.621 . AB=0;ABP=0;AC=2;AF=0.5;AN=4;AO=4;CIGAR=1X;DP=5;DPB=5;DPRA=4;EPP=11.6962;EPPR=0;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=0;NS=2;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=135;QR=0;RO=0;RPL=0;RPP=11.6962;RPPR=0;RPR=4;RUN=1;SAF=0;SAP=11.6962;SAR=4;SRF=0;SRP=0;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL ./.:.:.:.:.:.:.:. 1/1:4:0,4:0:0:4:135:-12.4835,-1.20412,0 0/0:1:0,0:0:0:0:0:0,0,0 dDocent_Contig_6593 67 . T A 132.796 . AB=0.245283;ABP=32.8783;AC=3;AF=0.5;AN=6;AO=13;CIGAR=1X;DP=53;DPB=53;DPRA=0;EPP=31.2394;EPPR=89.8692;GTI=0;LEN=1;MEANALT=1;MQM=37.0769;MQMR=50.825;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=451;QR=1375;RO=40;RPL=0;RPP=31.2394;RPPR=89.8692;RPR=13;RUN=1;SAF=0;SAP=31.2394;SAR=13;SRF=0;SRP=89.8692;SRR=40;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:30:22,8:22:750:8:282:-12.209,0,-53.4408 0/1:6:5,1:5:175:1:36:-0.56735,0,-14.1549 0/1:17:13,4:13:450:4:133:-4.58777,0,-34.0311 dDocent_Contig_6595 28 . C A 265.805 . AB=0.194444;ABP=61.3988;AC=2;AF=0.333333;AN=6;AO=14;CIGAR=1X;DP=75;DPB=75;DPRA=12;EPP=33.4109;EPPR=135.47;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=567;QR=2417;RO=61;RPL=0;RPP=33.4109;RPPR=135.47;RPR=14;RUN=1;SAF=14;SAP=33.4109;SAR=0;SRF=61;SRP=135.47;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:54:44,10:44:1745:10:405:-20.5548,0,-141.013 0/0:3:3,0:3:112:0:0:0,-0.90309,-10.4437 0/1:18:14,4:14:560:4:162:-9.54842,0,-45.3241 dDocent_Contig_6596 63 . T C 55.0894 . AB=0.166667;ABP=37.7539;AC=1;AF=0.166667;AN=6;AO=7;CIGAR=1X;DP=56;DPB=56;DPRA=8.83333;EPP=18.2106;EPPR=109.412;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=230;QR=1688;RO=49;RPL=0;RPP=18.2106;RPPR=109.412;RPR=7;RUN=1;SAF=0;SAP=18.2106;SAR=7;SRF=0;SRP=109.412;SRR=49;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:36:30,6:30:1025:6:195:-7.0316,0,-81.7209 0/0:3:3,0:3:105:0:0:0,-0.90309,-9.79616 0/0:17:16,1:16:558:1:35:0,-1.61888,-47.0508 dDocent_Contig_6597 32 . A G 310.936 . AB=0.382353;ABP=7.09778;AC=3;AF=0.5;AN=6;AO=13;CIGAR=1X;DP=34;DPB=34;DPRA=0;EPP=31.2394;EPPR=48.6112;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=0.0769231;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=508;QR=814;RO=21;RPL=0;RPP=31.2394;RPPR=48.6112;RPR=13;RUN=1;SAF=13;SAP=31.2394;SAR=0;SRF=21;SRP=48.6112;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:9:6,3:6:243:3:112:-7.73445,0,-19.5387 0/1:11:3,8:3:117:8:314:-25.3129,0,-7.59858 0/1:14:12,2:12:454:2:82:-3.56526,0,-36.9865 dDocent_Contig_6598 31 . T G 170.929 . AB=0.333333;ABP=8.07707;AC=1;AF=0.166667;AN=6;AO=7;CIGAR=1X;DP=44;DPB=44;DPRA=1.82609;EPP=18.2106;EPPR=83.3548;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=1.73472e-18;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=273;QR=1462;RO=37;RPL=0;RPP=18.2106;RPPR=83.3548;RPR=7;RUN=1;SAF=7;SAP=18.2106;SAR=0;SRF=37;SRP=83.3548;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:21:14,7:14:561:7:273:-18.615,0,-44.513 0/0:1:1,0:1:39:0:0:0,-0.30103,-3.89656 0/0:22:22,0:22:862:0:0:0,-6.62266,-77.897 dDocent_Contig_6600 38 . G A 4713.75 . AB=0.588832;ABP=16.5131;AC=4;AF=0.666667;AN=6;AO=116;CIGAR=8M1X4M;DP=197;DPB=197.462;DPRA=0;EPP=254.901;EPPR=26.8965;GTI=0;LEN=1;MEANALT=3.66667;MQM=60;MQMR=60;NS=3;NUMALT=3;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=4589;QR=428;RO=11;RPL=0;RPP=254.901;RPPR=26.8965;RPR=116;RUN=1;SAF=116;SAP=254.901;SAR=0;SRF=11;SRP=26.8965;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 1|1:116:6,21,9,75:6:232:21,9,75:792,359,2969:-288.374,-225.287,-238.02,-260.614,-214.775,-276.959,-45.8381,0,-35.3232,-42.3165 0|1:6:0,0,1,5:0:0:0,1,5:0,37,173:-17.4282,-17.4282,-17.4282,-14.3971,-14.3971,-14.0961,-3.3968,-3.3968,0,-1.89165 0|1:75:5,11,22,36:5:196:11,22,36:427,844,1447:-170.887,-137.309,-150.115,-103.131,-84.1671,-112.625,-53.1431,-34.1774,0,-58.4246 dDocent_Contig_6602 40 . C A 350.536 . AB=0.294118;ABP=21.7871;AC=2;AF=0.333333;AN=6;AO=15;CIGAR=1X;DP=58;DPB=58;DPRA=3.64286;EPP=35.5824;EPPR=96.3836;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=591;QR=1725;RO=43;RPL=0;RPP=35.5824;RPPR=96.3836;RPR=15;RUN=1;SAF=15;SAP=35.5824;SAR=0;SRF=43;SRP=96.3836;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:39:27,12:27:1089:12:469:-30.8164,0,-86.5562 0/0:7:7,0:7:271:0:0:0,-2.10721,-24.7514 0/1:12:9,3:9:365:3:122:-7.76013,0,-29.6027 dDocent_Contig_6603 12 . C T 127.061 . AB=0.333333;ABP=6.62942;AC=1;AF=0.166667;AN=6;AO=5;CIGAR=1X;DP=27;DPB=27;DPRA=2.5;EPP=13.8677;EPPR=50.7827;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=204;QR=886;RO=22;RPL=0;RPP=13.8677;RPPR=50.7827;RPR=5;RUN=1;SAF=5;SAP=13.8677;SAR=0;SRF=22;SRP=50.7827;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:15:10,5:10:406:5:204:-14.2286,0,-32.385 0/0:2:2,0:2:79:0:0:0,-0.60206,-7.49724 0/0:10:10,0:10:401:0:0:0,-3.0103,-36.4494 dDocent_Contig_6604 107 . N A 284.208 . AB=0;ABP=0;AC=6;AF=1;AN=6;AO=11;CIGAR=1X;DP=11;DPB=11;DPRA=0;EPP=26.8965;EPPR=0;GTI=0;LEN=1;MEANALT=1;MQM=59.5455;MQMR=0;NS=3;NUMALT=1;ODDS=1.69407e-21;PAIRED=1;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=302;QR=0;RO=0;RPL=0;RPP=26.8965;RPPR=0;RPR=11;RUN=1;SAF=0;SAP=26.8965;SAR=11;SRF=0;SRP=0;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 1/1:2:0,2:0:0:2:34:-3.22993,-0.60206,0 1/1:8:0,8:0:0:8:238:-21.7129,-2.40824,0 1/1:1:0,1:0:0:1:30:-2.99957,-0.30103,0 dDocent_Contig_6606 51 . A C 371.643 . AB=0.173913;ABP=109.224;AC=1;AF=0.166667;AN=6;AO=26;CIGAR=1X;DP=222;DPB=222;DPRA=0;EPP=59.4686;EPPR=35.3165;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=57.6173;NS=3;NUMALT=1;ODDS=1.38778e-17;PAIRED=0;PAIREDR=0.158163;PAO=0;PQA=0;PQR=0;PRO=0;QA=1046;QR=7615;RO=196;RPL=26;RPP=59.4686;RPPR=28.5362;RPR=0;RUN=1;SAF=26;SAP=59.4686;SAR=0;SRF=193;SRP=402.96;SRR=3;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:115:95,20:95:3676:20:811:-38.6872,0,-295.977 0/0:25:24,1:24:933:1:32:0,-4.32644,-81.0534 0/0:82:77,5:77:3006:5:203:0,-6.03161,-242.268 dDocent_Contig_6607 107 . N T 147.862 . AB=0;ABP=0;AC=4;AF=1;AN=4;AO=5;CIGAR=1X3M1X;DP=5;DPB=5;DPRA=0;EPP=13.8677;EPPR=0;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=0;NS=2;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=154;QR=0;RO=0;RPL=0;RPP=13.8677;RPPR=0;RPR=5;RUN=1;SAF=0;SAP=13.8677;SAR=5;SRF=0;SRP=0;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 1|1:2:0,2:0:0:2:69:-6.55266,-0.60206,0 1|1:3:0,3:0:0:3:85:-7.93164,-0.90309,0 .:.:.:.:.:.:.:. dDocent_Contig_6608 12 . C T 2071.32 . AB=0.0540541;ABP=322.569;AC=1;AF=0.166667;AN=6;AO=10;CIGAR=1M1X5M;DP=185;DPB=185;DPRA=0;EPP=24.725;EPPR=89.8692;GTI=0;LEN=1;MEANALT=5;MQM=47.6;MQMR=58.75;NS=3;NUMALT=5;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=394;QR=1557;RO=40;RPL=0;RPP=24.725;RPPR=89.8692;RPR=10;RUN=1;SAF=10;SAP=24.725;SAR=0;SRF=40;SRP=89.8692;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|0:95:17,9,6,18,2,43:17:680:9,6,18,2,43:354,233,711,78,1715:-124.829,-102.769,-155.95,-110.804,-139.517,-164.888,-75.8351,-104.549,-112.584,-126.307,-123.646,-152.358,-160.394,-125.425,-178.934,0,-28.7176,-36.7513,-1.78788,-49.5929,-42.9492 0|0:50:9,1,4,17,5,14:9:337:1,4,17,5,14:40,157,676,193,558:-63.3871,-63.0684,-90.3369,-53.1963,-77.7383,-79.5622,-14.7195,-39.2607,-29.3882,-37.1711,-50.5827,-75.1244,-65.2525,-26.775,-76.6473,-23.8056,-48.3468,-38.4746,0,-35.8612,-47.1604 0|1:40:14,2,9,6,3,6:14:540:2,9,6,3,6:77,349,240,123,240:-24.436,-22.7537,-66.4927,0,-38.4472,-41.635,-10.4847,-48.9287,-26.1781,-53.0194,-18.7435,-57.1891,-34.4378,-44.9198,-62.1832,-10.4847,-48.9287,-26.1781,-36.66,-44.9198,-53.0194 dDocent_Contig_6609 88 . C T 524.765 . AB=0.328358;ABP=20.1552;AC=4;AF=0.666667;AN=6;AO=24;CIGAR=1X;DP=69;DPB=69;DPRA=0;EPP=55.1256;EPPR=100.727;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=835;QR=1549;RO=45;RPL=24;RPP=55.1256;RPPR=100.727;RPR=0;RUN=1;SAF=24;SAP=55.1256;SAR=0;SRF=45;SRP=100.727;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:48:32,16:32:1106:16:555:-35.8287,0,-85.3982 1/1:2:0,2:0:0:2:70:-6.6474,-0.60206,0 0/1:19:13,6:13:443:6:210:-13.5229,0,-34.477 dDocent_Contig_6611 71 . G A 2737.12 . AB=0.791667;ABP=91.6788;AC=3;AF=0.5;AN=6;AO=95;CIGAR=1X;DP=120;DPB=120;DPRA=0;EPP=209.3;EPPR=57.2971;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=3494;QR=928;RO=25;RPL=95;RPP=209.3;RPPR=57.2971;RPR=0;RUN=1;SAF=95;SAP=209.3;SAR=0;SRF=25;SRP=57.2971;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:62:11,51:11:423:51:1899:-152.499,0,-19.7598 0/1:15:3,12:3:111:12:436:-35.0632,0,-5.83847 0/1:43:11,32:11:394:32:1159:-91.6729,0,-22.8554 dDocent_Contig_6613 39 . T A 542.086 . AB=0.338462;ABP=17.7429;AC=3;AF=0.5;AN=6;AO=22;CIGAR=1X;DP=65;DPB=65;DPRA=0;EPP=50.7827;EPPR=96.3836;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=869;QR=1696;RO=43;RPL=0;RPP=50.7827;RPPR=96.3836;RPR=22;RUN=1;SAF=22;SAP=50.7827;SAR=0;SRF=43;SRP=96.3836;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:16:13,3:13:495:3:114:-5.81361,0,-40.0633 0/1:10:5,5:5:197:5:200:-15.3687,0,-15.0952 0/1:39:25,14:25:1004:14:555:-38.5491,0,-78.9144 dDocent_Contig_6615 15 . C T 118.35 . AB=0.157895;ABP=60.9543;AC=2;AF=0.333333;AN=6;AO=9;CIGAR=1X1M1X4M;DP=61;DPB=61;DPRA=7.125;EPP=22.5536;EPPR=107.241;GTI=0;LEN=1;MEANALT=2;MQM=60;MQMR=60;NS=3;NUMALT=3;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=344;QR=1894;RO=48;RPL=0;RPP=22.5536;RPPR=107.241;RPR=9;RUN=1;SAF=9;SAP=22.5536;SAR=0;SRF=48;SRP=107.241;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|1:29:20,5,2,2:20:796:5,2,2:198,65,82:-10.2918,0,-64.0633,-11.0825,-60.3281,-76.0221,-9.53669,-58.7988,-69.8551,-74.4942 0|0:4:4,0,0,0:4:156:0,0,0:0,0,0:0,-1.20412,-14.4168,-1.20412,-14.4168,-14.4168,-1.20412,-14.4168,-14.4168,-14.4168 0|1:28:24,4,0,0:24:942:4,0,0:146,0,0:-5.0657,0,-76.657,-12.2904,-77.8612,-89.7829,-12.2904,-77.8612,-89.7829,-89.7829 dDocent_Contig_6616 8 . T C 481.799 . 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AB=0.308824;ABP=24.5973;AC=2;AF=0.333333;AN=6;AO=21;CIGAR=1X;DP=86;DPB=86;DPRA=1.88889;EPP=48.6112;EPPR=144.156;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=3.46945e-18;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=787;QR=2270;RO=65;RPL=0;RPP=48.6112;RPPR=144.156;RPR=21;RUN=1;SAF=0;SAP=48.6112;SAR=21;SRF=0;SRP=144.156;SRR=65;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:55:38,17:38:1345:17:642:-41.5576,0,-104.79 0/1:13:9,4:9:293:4:145:-9.49035,0,-22.7742 0/0:18:18,0:18:632:0:0:0,-5.41854,-57.2024 dDocent_Contig_6621 26 . G A 1007.71 . 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AB=0.194915;ABP=98.4079;AC=3;AF=0.5;AN=6;AO=23;CIGAR=1X;DP=118;DPB=118;DPRA=0;EPP=52.9542;EPPR=207.129;GTI=0;LEN=1;MEANALT=1.33333;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=6.93889e-18;PAIRED=0.695652;PAIREDR=0.925532;PAO=0;PQA=0;PQR=0;PRO=0;QA=895;QR=3700;RO=94;RPL=0;RPP=52.9542;RPPR=207.129;RPR=23;RUN=1;SAF=23;SAP=52.9542;SAR=0;SRF=94;SRP=207.129;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:79:61,17:61:2455:17:665:-36.2932,0,-197.204 0/1:7:4,3:4:116:3:115:-8.616,0,-8.61459 0/1:32:29,3:29:1129:3:115:-1.09025,0,-92.2558 dDocent_Contig_6624 9 . T G 33.6711 . AB=0.15;ABP=24.2907;AC=1;AF=0.166667;AN=6;AO=3;CIGAR=1X;DP=40;DPB=40;DPRA=2;EPP=9.52472;EPPR=83.3548;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=117;QR=1431;RO=37;RPL=0;RPP=9.52472;RPPR=83.3548;RPR=3;RUN=1;SAF=3;SAP=9.52472;SAR=0;SRF=37;SRP=83.3548;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:20:17,3:17:655:3:117:-4.88978,0,-53.2657 0/0:6:6,0:6:232:0:0:0,-1.80618,-21.2489 0/0:14:14,0:14:544:0:0:0,-4.21442,-49.3062 dDocent_Contig_6625 14 . A G 50.3314 . 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AB=0.175676;ABP=70.6194;AC=3;AF=0.5;AN=6;AO=13;CIGAR=1X;DP=74;DPB=74;DPRA=0;EPP=31.2394;EPPR=135.47;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=529;QR=2419;RO=61;RPL=0;RPP=31.2394;RPPR=135.47;RPR=13;RUN=1;SAF=13;SAP=31.2394;SAR=0;SRF=61;SRP=135.47;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:52:42,10:42:1655:10:407:-21.3368,0,-133.516 0/1:4:3,1:3:119:1:40:-2.79156,0,-9.89089 0/1:18:16,2:16:645:2:82:-2.36114,0,-52.9644 dDocent_Contig_6629 14 . A G 331.526 . AB=0.419355;ABP=4.76149;AC=3;AF=0.5;AN=6;AO=13;CIGAR=1X;DP=31;DPB=31;DPRA=0;EPP=31.2394;EPPR=42.0968;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=507;QR=732;RO=18;RPL=0;RPP=31.2394;RPPR=42.0968;RPR=13;RUN=1;SAF=13;SAP=31.2394;SAR=0;SRF=18;SRP=42.0968;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:16:6,10:6:244:10:385:-30.1851,0,-17.5223 0/1:4:2,2:2:81:2:81:-6.48161,0,-6.48161 0/1:11:10,1:10:407:1:41:-0.783237,0,-33.6791 dDocent_Contig_6630 106 . N A 45.7495 . AB=0;ABP=0;AC=2;AF=1;AN=2;AO=2;CIGAR=1X4I2X3M8I1M1X;DP=3;DPB=7.125;DPRA=0;EPP=7.35324;EPPR=0;GTI=0;LEN=1;MEANALT=2;MQM=25;MQMR=0;NS=1;NUMALT=1;ODDS=5.99146;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=76;QR=0;RO=0;RPL=0;RPP=7.35324;RPPR=0;RPR=2;RUN=1;SAF=2;SAP=7.35324;SAR=0;SRF=0;SRP=0;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL .:.:.:.:.:.:.:. 1|1:3:0,2:0:0:2:76:-4.57385,-0.60206,0 .:.:.:.:.:.:.:. dDocent_Contig_6631 74 . G T 509.343 . AB=0.4375;ABP=4.6389;AC=3;AF=0.5;AN=6;AO=21;CIGAR=1X;DP=48;DPB=48;DPRA=0;EPP=48.6112;EPPR=61.6401;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=776;QR=992;RO=27;RPL=21;RPP=48.6112;RPPR=61.6401;RPR=0;RUN=1;SAF=21;SAP=48.6112;SAR=0;SRF=27;SRP=61.6401;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:31:16,15:16:589:15:558:-41.2212,0,-44.0105 0/1:2:1,1:1:40:1:36:-2.99621,0,-3.39362 0/1:15:10,5:10:363:5:182:-12.2197,0,-28.5005 dDocent_Contig_6632 14 . G A 190.13 . AB=0.121037;ABP=435.859;AC=3;AF=0.5;AN=6;AO=42;CIGAR=1X;DP=347;DPB=347;DPRA=0;EPP=94.2121;EPPR=665.309;GTI=0;LEN=1;MEANALT=1;MQM=52.1905;MQMR=54.259;NS=3;NUMALT=1;ODDS=0;PAIRED=0.809524;PAIREDR=0.986885;PAO=0;PQA=0;PQR=0;PRO=0;QA=1582;QR=11735;RO=305;RPL=0;RPP=94.2121;RPPR=665.309;RPR=42;RUN=1;SAF=42;SAP=94.2121;SAR=0;SRF=305;SRP=665.309;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:87:75,12:75:2888:12:463:-8.28794,0,-228.413 0/1:210:187,23:187:7177:23:871:-12.3932,0,-516.744 0/1:50:43,7:43:1670:7:248:-3.85265,0,-126.116 dDocent_Contig_6633 7 . T C 2109.81 . AB=0.148148;ABP=293.344;AC=1;AF=0.166667;AN=6;AO=40;CIGAR=1X2M1X3M1X1M2X2M2X1M1X6M;DP=270;DPB=270;DPRA=0;EPP=89.8692;EPPR=89.8692;GTI=0;LEN=1;MEANALT=16.3333;MQM=60;MQMR=60;NS=3;NUMALT=9;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=1555;QR=1554;RO=40;RPL=0;RPP=89.8692;RPPR=89.8692;RPR=40;RUN=1;SAF=40;SAP=89.8692;SAR=0;SRF=40;SRP=89.8692;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|0:135:17,2,7,0,18,0,18,11,31,0:17:664:2,7,0,18,0,18,11,31,0:80,266,0,696,0,704,434,1244,0:-100.669,-99.196,-153.181,-83.9754,-131.972,-136.455,-105.786,-153.783,-138.562,-160.373,-48.6226,-96.6187,-81.3981,-103.209,-97.7905,-105.786,-153.783,-138.562,-160.373,-103.209,-160.373,-47.9078,-95.904,-80.6834,-102.494,-45.3306,-102.494,-97.0758,-70.0759,-118.072,-102.851,-124.662,-67.4986,-124.662,-66.7838,-121.351,-3.29208,-51.2888,-36.0681,-57.8793,-0.714958,-57.8793,0,-22.1683,-48.5473,-105.786,-153.783,-138.562,-160.373,-103.209,-160.373,-102.494,-124.662,-57.8793,-160.373 1|0:51:2,3,3,4,8,4,1,0,12,3:2:76:3,3,4,8,4,1,0,12,3:119,115,155,318,151,40,0,478,113:-58.7184,-49.5235,-54.8533,-49.882,-46.3178,-55.2118,-46.5863,-43.022,-43.3806,-51.615,-33.1352,-29.5707,-29.9294,-26.6335,-36.9599,-46.9454,-43.3812,-43.7397,-40.444,-26.9928,-51.9741,-56.025,-52.4609,-52.8194,-49.5236,-36.0725,-49.8827,-61.9569,-59.3205,-55.7564,-56.1148,-52.8191,-39.3681,-53.1782,-62.2579,-65.5533,-19.9546,-16.3899,-16.7487,-13.4527,0,-13.8121,-22.892,-26.1877,-22.5753,-50.0642,-46.5,-46.8585,-43.5628,-30.1116,-43.9219,-53.0015,-56.297,-16.931,-55.3939 0|0:84:21,1,3,0,14,1,0,12,19,2:21:814:1,3,0,14,1,0,12,19,2:40,120,0,541,40,0,473,769,82:-57.0891,-60.1155,-126.686,-53.5253,-117.101,-119.493,-63.4107,-126.987,-120.396,-130.282,-18.9826,-82.5573,-75.967,-85.8524,-81.638,-60.1155,-123.691,-117.101,-126.987,-82.5573,-126.686,-63.4107,-126.987,-120.396,-130.282,-85.8524,-126.987,-130.282,-24.495,-88.0704,-81.4801,-91.3656,-46.9366,-88.0704,-91.3656,-87.7532,0,-63.5764,-56.986,-66.8716,-22.442,-63.5764,-66.8716,-27.9548,-61.1521,-56.6421,-120.218,-113.628,-123.513,-79.0839,-120.218,-123.513,-84.597,-60.1029,-122.911 dDocent_Contig_6634 33 . A T 32.5149 . AB=0.15;ABP=24.2907;AC=1;AF=0.166667;AN=6;AO=3;CIGAR=1X;DP=48;DPB=48;DPRA=1.42857;EPP=9.52472;EPPR=100.727;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=119;QR=1759;RO=45;RPL=0;RPP=9.52472;RPPR=100.727;RPR=3;RUN=1;SAF=3;SAP=9.52472;SAR=0;SRF=45;SRP=100.727;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:26:26,0:26:1019:0:0:0,-7.82678,-92.005 0/0:2:2,0:2:73:0:0:0,-0.60206,-6.9313 0/1:20:17,3:17:667:3:119:-5.07479,0,-54.3375 dDocent_Contig_6635 107 . N G 158.186 . AB=0;ABP=0;AC=2;AF=1;AN=2;AO=5;CIGAR=1X;DP=5;DPB=5;DPRA=0;EPP=13.8677;EPPR=0;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=0;NS=1;NUMALT=1;ODDS=8.07091;PAIRED=1;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=172;QR=0;RO=0;RPL=0;RPP=13.8677;RPPR=0;RPR=5;RUN=1;SAF=0;SAP=13.8677;SAR=5;SRF=0;SRP=0;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 1/1:5:0,5:0:0:5:172:-15.8185,-1.50515,0 ./.:.:.:.:.:.:.:. ./.:.:.:.:.:.:.:. dDocent_Contig_6636 15 . C G 275.326 . AB=0.3;ABP=16.9077;AC=3;AF=0.5;AN=6;AO=12;CIGAR=1X;DP=40;DPB=40;DPRA=0;EPP=29.068;EPPR=63.8115;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=488;QR=1137;RO=28;RPL=0;RPP=29.068;RPPR=63.8115;RPR=12;RUN=1;SAF=12;SAP=29.068;SAR=0;SRF=28;SRP=63.8115;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:24:17,7:17:688:7:283:-18.6183,0,-55.0242 0/1:2:1,1:1:41:1:41:-3.49251,0,-3.49251 0/1:14:10,4:10:408:4:164:-10.9355,0,-32.8662 dDocent_Contig_6637 9 . T A 418.339 . AB=0.339623;ABP=14.851;AC=3;AF=0.5;AN=6;AO=18;CIGAR=1X;DP=53;DPB=53;DPRA=0;EPP=42.0968;EPPR=79.0118;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=0;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=687;QR=1354;RO=35;RPL=0;RPP=42.0968;RPPR=79.0118;RPR=18;RUN=1;SAF=18;SAP=42.0968;SAR=0;SRF=35;SRP=79.0118;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:26:14,12:14:542:12:457:-33.6506,0,-41.2992 0/1:8:4,4:4:152:4:152:-11.6414,0,-11.6414 0/1:19:17,2:17:660:2:78:-1.6839,0,-54.0175 dDocent_Contig_6638 41 . G C 242.688 . AB=0.137931;ABP=36.0317;AC=1;AF=0.166667;AN=6;AO=4;CIGAR=1M3I3M1X1M1X1M18D1M1X1M1X1M1X;DP=59;DPB=57.125;DPRA=0;EPP=11.6962;EPPR=92.0407;GTI=0;LEN=1;MEANALT=2;MQM=60;MQMR=60;NS=3;NUMALT=2;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=154;QR=1577;RO=41;RPL=0;RPP=11.6962;RPPR=92.0407;RPR=4;RUN=1;SAF=4;SAP=11.6962;SAR=0;SRF=41;SRP=92.0407;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|0:23:17,1,5:17:649:1,5:40,171:-8.69944,-10.5122,-63.4867,0,-49.9315,-51.7224 1|0:6:1,3,2:1:39:3,2:114,81:-12.5204,-3.48814,-5.78598,-6.13229,0,-8.73861 0|0:30:23,0,5:23:889:0,5:0,188:-8.57183,-15.4955,-88.5481,0,-73.1495,-71.6443 dDocent_Contig_6639 20 . G A 881.434 . AB=0.6;ABP=7.35324;AC=3;AF=0.5;AN=6;AO=30;CIGAR=1X;DP=50;DPB=50;DPRA=0;EPP=68.1545;EPPR=46.4397;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=0.8;PAIREDR=0.8;PAO=0;PQA=0;PQR=0;PRO=0;QA=1196;QR=803;RO=20;RPL=0;RPP=68.1545;RPPR=46.4397;RPR=30;RUN=1;SAF=30;SAP=68.1545;SAR=0;SRF=20;SRP=46.4397;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:27:11,16:11:441:16:641:-49.8975,0,-31.9149 0/1:6:3,3:3:120:3:122:-9.56631,0,-9.38172 0/1:17:6,11:6:242:11:433:-34.2024,0,-17.0398 dDocent_Contig_6640 72 . A G 101.007 . AB=0.277778;ABP=10.7311;AC=1;AF=0.25;AN=4;AO=5;CIGAR=9M1X5M;DP=24;DPB=24.3333;DPRA=3;EPP=13.8677;EPPR=33.4109;GTI=0;LEN=1;MEANALT=2;MQM=60;MQMR=60;NS=2;NUMALT=2;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=178;QR=510;RO=14;RPL=5;RPP=13.8677;RPPR=33.4109;RPR=0;RUN=1;SAF=5;SAP=13.8677;SAR=0;SRF=14;SRP=33.4109;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|1:18:9,4,5:9:339:4,5:143,178:-11.7971,-2.84574,-29.4347,0,-16.139,-26.2879 .:.:.:.:.:.:.:. 0|0:6:5,1,0:5:171:1,0:18,0:0,-0.00620688,-13.9234,-1.50515,-14.2244,-15.5164 dDocent_Contig_6642 138 . G A 280.543 . AB=0.464286;ABP=3.32051;AC=2;AF=0.5;AN=4;AO=13;CIGAR=1X;DP=28;DPB=28;DPRA=0;EPP=31.2394;EPPR=35.5824;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=2;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=432;QR=510;RO=15;RPL=0;RPP=31.2394;RPPR=35.5824;RPR=13;RUN=1;SAF=0;SAP=31.2394;SAR=13;SRF=0;SRP=35.5824;SRR=15;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:8:7,1:7:235:1:35:-1.09039,0,-19.0701 ./.:.:.:.:.:.:.:. 0/1:20:8,12:8:275:12:397:-30.0284,0,-19.0642 dDocent_Contig_6644 11 . A G 198.609 . 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AB=0.387097;ABP=6.44263;AC=1;AF=0.166667;AN=6;AO=12;CIGAR=1X;DP=43;DPB=43;DPRA=5.16667;EPP=29.068;EPPR=70.3259;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=1.73472e-18;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=476;QR=1213;RO=31;RPL=0;RPP=29.068;RPPR=70.3259;RPR=12;RUN=1;SAF=12;SAP=29.068;SAR=0;SRF=31;SRP=70.3259;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:31:19,12:19:757:12:476:-33.8583,0,-59.1209 0/0:1:1,0:1:40:0:0:0,-0.30103,-3.99568 0/0:11:11,0:11:416:0:0:0,-3.31133,-37.7797 dDocent_Contig_6649 9 . T G 404.242 . AB=0.176871;ABP=136.327;AC=3;AF=0.5;AN=6;AO=26;CIGAR=1X2M1X;DP=147;DPB=147;DPRA=0;EPP=59.4686;EPPR=265.758;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=990;QR=4741;RO=121;RPL=0;RPP=59.4686;RPPR=265.758;RPR=26;RUN=1;SAF=26;SAP=59.4686;SAR=0;SRF=121;SRP=265.758;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|1:124:103,21:103:4029:21:796:-34.6346,0,-325.32 0|1:3:2,1:2:77:1:39:-2.99347,0,-6.40574 0|1:20:16,4:16:635:4:155:-8.30454,0,-51.4675 dDocent_Contig_6650 47 . G A 69.6429 . AB=0.375;ABP=4.09604;AC=1;AF=0.25;AN=4;AO=3;CIGAR=1X;DP=14;DPB=14;DPRA=1.33333;EPP=9.52472;EPPR=26.8965;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=2;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=122;QR=441;RO=11;RPL=0;RPP=9.52472;RPPR=26.8965;RPR=3;RUN=1;SAF=3;SAP=9.52472;SAR=0;SRF=11;SRP=26.8965;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL ./.:.:.:.:.:.:.:. 0/0:6:6,0:6:240:0:0:0,-1.80618,-21.9754 0/1:8:5,3:5:201:3:122:-8.96425,0,-16.0618 dDocent_Contig_6651 46 . C T 242.009 . AB=0.220339;ABP=43.0905;AC=3;AF=0.5;AN=6;AO=13;CIGAR=1X;DP=59;DPB=59;DPRA=0;EPP=31.2394;EPPR=102.898;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=515;QR=1846;RO=46;RPL=0;RPP=31.2394;RPPR=102.898;RPR=13;RUN=1;SAF=13;SAP=31.2394;SAR=0;SRF=46;SRP=102.898;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:18:15,3:15:608:3:122:-5.95395,0,-49.6398 0/1:7:4,3:4:161:3:115:-8.61727,0,-12.7683 0/1:34:27,7:27:1077:7:278:-15.1525,0,-86.9769 dDocent_Contig_6653 19 . C T 69.0895 . AB=0.159091;ABP=47.4268;AC=2;AF=0.333333;AN=6;AO=7;CIGAR=1X1M1X;DP=53;DPB=53;DPRA=2.44444;EPP=18.2106;EPPR=98.5551;GTI=0;LEN=1;MEANALT=1.5;MQM=60;MQMR=60;NS=3;NUMALT=2;ODDS=0;PAIRED=0.428571;PAIREDR=0.909091;PAO=0;PQA=0;PQR=0;PRO=0;QA=253;QR=1741;RO=44;RPL=0;RPP=18.2106;RPPR=98.5551;RPR=7;RUN=1;SAF=7;SAP=18.2106;SAR=0;SRF=44;SRP=98.5551;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|1:38:31,5,2:31:1218:5,2:186,79:-5.87551,0,-98.6641,-8.69995,-93.6682,-108.287 0|1:6:4,2,0:4:161:2,0:67,0:-4.5559,0,-13.0693,-5.76002,-13.6714,-19.0741 0|0:9:9,0,0:9:362:0,0:0,0:0,-2.70927,-32.9448,-2.70927,-32.9448,-32.9448 dDocent_Contig_6656 17 . A T 466.738 . AB=0.36;ABP=11.5225;AC=2;AF=0.5;AN=4;AO=18;CIGAR=1X;DP=50;DPB=50;DPRA=0;EPP=42.0968;EPPR=72.4974;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=2;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=719;QR=1290;RO=32;RPL=0;RPP=42.0968;RPPR=72.4974;RPR=18;RUN=1;SAF=18;SAP=42.0968;SAR=0;SRF=32;SRP=72.4974;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:31:23,8:23:927:8:310:-18.9218,0,-74.4032 ./.:.:.:.:.:.:.:. 0/1:19:9,10:9:363:10:409:-31.451,0,-27.3149 dDocent_Contig_6657 23 . A G 2731.28 . 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C T 62.8511 . AB=0.333333;ABP=5.18177;AC=1;AF=0.166667;AN=6;AO=4;CIGAR=1X2M2I4M;DP=29;DPB=30.1429;DPRA=1.57143;EPP=11.6962;EPPR=57.2971;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=0;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=153;QR=973;RO=25;RPL=4;RPP=11.6962;RPPR=57.2971;RPR=0;RUN=1;SAF=4;SAP=11.6962;SAR=0;SRF=25;SRP=57.2971;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|0:13:12,1:12:481:1:37:0,-0.215561,-39.9438 0|1:9:6,3:6:226:3:116:-8.10813,0,-17.9888 0|0:7:7,0:7:266:0:0:0,-2.10721,-24.2981 dDocent_Contig_6659 26 . A T 252.861 . AB=0.333333;ABP=10.9724;AC=3;AF=0.5;AN=6;AO=11;CIGAR=1X1M1X;DP=33;DPB=33;DPRA=0;EPP=26.8965;EPPR=48.6112;GTI=0;LEN=1;MEANALT=1.33333;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=0.272727;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=441;QR=829;RO=21;RPL=0;RPP=26.8965;RPPR=48.6112;RPR=11;RUN=1;SAF=11;SAP=26.8965;SAR=0;SRF=21;SRP=48.6112;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|1:20:11,8:11:431:8:322:-23.2205,0,-33.0147 0|1:2:1,1:1:40:1:39:-3.2945,0,-3.39362 0|1:11:9,2:9:358:2:80:-4.28025,0,-29.2714 dDocent_Contig_6660 14 . A G 1492.03 . AB=0.176471;ABP=80.2892;AC=3;AF=0.5;AN=6;AO=15;CIGAR=1X6M;DP=85;DPB=85;DPRA=0;EPP=35.5824;EPPR=44.2683;GTI=0;LEN=1;MEANALT=2.33333;MQM=60;MQMR=60;NS=3;NUMALT=2;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=597;QR=762;RO=19;RPL=0;RPP=35.5824;RPPR=44.2683;RPR=15;RUN=1;SAF=15;SAP=35.5824;SAR=0;SRF=19;SRP=44.2683;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|1:43:8,25,8:8:323:25,8:992,323:-79.2521,0,-19.1047,-55.0317,-0.00087281,-79.2529 0|1:11:4,5,2:4:162:5,2:196,69:-14.9477,0,-11.893,-10.5602,-7.81301,-23.3222 0|1:31:7,19,5:7:277:19,5:759,205:-60.4011,0,-17.0697,-45.5857,-5.86296,-66.8771 dDocent_Contig_6661 111 . G C 171.96 . AB=0.2;ABP=61.6401;AC=2;AF=0.5;AN=4;AO=15;CIGAR=1X;DP=75;DPB=75;DPRA=0;EPP=35.5824;EPPR=133.299;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=2;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=476;QR=1931;RO=60;RPL=0;RPP=35.5824;RPPR=133.299;RPR=15;RUN=1;SAF=0;SAP=35.5824;SAR=15;SRF=0;SRP=133.299;SRR=60;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:63:53,10:53:1706:10:307:-8.96426,0,-134.852 ./.:.:.:.:.:.:.:. 0/1:12:7,5:7:225:5:169:-11.9307,0,-16.9531 dDocent_Contig_6662 9 . T C 169.199 . AB=0.4;ABP=3.87889;AC=3;AF=0.5;AN=6;AO=6;CIGAR=1X;DP=17;DPB=17;DPRA=1.2;EPP=16.0391;EPPR=26.8965;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=230;QR=410;RO=11;RPL=0;RPP=16.0391;RPPR=26.8965;RPR=6;RUN=1;SAF=6;SAP=16.0391;SAR=0;SRF=11;SRP=26.8965;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:10:6,4:6:227:4:152:-11.0389,0,-17.783 1/1:2:0,2:0:0:2:78:-7.40347,-0.60206,0 0/0:5:5,0:5:183:0:0:0,-1.50515,-16.8232 dDocent_Contig_6663 141 . C G 323.91 . AB=0.4;ABP=6.05036;AC=2;AF=0.333333;AN=6;AO=15;CIGAR=1X;DP=104;DPB=104;DPRA=0;EPP=35.5824;EPPR=196.271;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=549;QR=3294;RO=89;RPL=0;RPP=35.5824;RPPR=196.271;RPR=15;RUN=1;SAF=0;SAP=35.5824;SAR=15;SRF=0;SRP=196.271;SRR=89;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:69:68,1:68:2529:1:41:0,-16.6765,-223.72 0/1:3:2,1:2:68:1:37:-2.79474,0,-5.55332 0/1:32:19,13:19:697:13:471:-33.0964,0,-53.4158 dDocent_Contig_6665 40 . C T 792.706 . AB=0.360465;ABP=17.5541;AC=3;AF=0.5;AN=6;AO=31;CIGAR=1X;DP=86;DPB=86;DPRA=0;EPP=70.3259;EPPR=122.441;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=6.93889e-18;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=1218;QR=2193;RO=55;RPL=0;RPP=70.3259;RPPR=122.441;RPR=31;RUN=1;SAF=31;SAP=70.3259;SAR=0;SRF=55;SRP=122.441;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:52:32,20:32:1267:20:786:-55.3998,0,-98.6435 0/1:10:6,4:6:234:4:163:-12.0481,0,-18.4161 0/1:24:17,7:17:692:7:269:-17.3455,0,-55.3833 dDocent_Contig_6668 107 . N A 101.495 . AB=0;ABP=0;AC=4;AF=1;AN=4;AO=3;CIGAR=1X;DP=3;DPB=3;DPRA=0;EPP=9.52472;EPPR=0;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=0;NS=2;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=102;QR=0;RO=0;RPL=0;RPP=9.52472;RPPR=0;RPR=3;RUN=1;SAF=0;SAP=9.52472;SAR=3;SRF=0;SRP=0;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 1/1:1:0,1:0:0:1:32:-3.19931,-0.30103,0 ./.:.:.:.:.:.:.:. 1/1:2:0,2:0:0:2:70:-6.6474,-0.60206,0 dDocent_Contig_6669 19 . C T 3851.27 . AB=0.135845;ABP=2326.24;AC=3;AF=0.5;AN=6;AO=274;CIGAR=1X;DP=2017;DPB=2017;DPRA=0;EPP=597.994;EPPR=3638.06;GTI=0;LEN=1;MEANALT=3;MQM=59.9015;MQMR=59.9172;NS=3;NUMALT=1;ODDS=0;PAIRED=0.434307;PAIREDR=0.621573;PAO=0;PQA=0;PQR=0;PRO=0;QA=10883;QR=67006;RO=1678;RPL=0;RPP=597.994;RPPR=3646.74;RPR=274;RUN=1;SAF=274;SAP=597.994;SAR=0;SRF=1677;SRP=3638.06;SRR=1;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:960:802,140:802:32025:140:5566:-216.805,0,-2593.79 0/1:493:405,63:405:16224:63:2495:-83.3037,0,-1317.58 0/1:564:471,71:471:18757:71:2822:-90.5415,0,-1522.73 dDocent_Contig_6670 14 . C T 161.926 . AB=0.291667;ABP=12.0581;AC=1;AF=0.25;AN=4;AO=7;CIGAR=1X;DP=54;DPB=54;DPRA=0.8;EPP=18.2106;EPPR=105.07;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=2;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=275;QR=1870;RO=47;RPL=0;RPP=18.2106;RPPR=105.07;RPR=7;RUN=1;SAF=7;SAP=18.2106;SAR=0;SRF=47;SRP=105.07;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:24:17,7:17:691:7:275:-17.8916,0,-55.2941 ./.:.:.:.:.:.:.:. 0/0:30:30,0:30:1179:0:0:0,-9.0309,-106.388 dDocent_Contig_6671 36 . C T 478.443 . AB=0.344262;ABP=15.8611;AC=3;AF=0.5;AN=6;AO=21;CIGAR=2X;DP=61;DPB=61;DPRA=0;EPP=48.6112;EPPR=89.8692;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=785;QR=1551;RO=40;RPL=0;RPP=48.6112;RPPR=89.8692;RPR=21;RUN=1;SAF=21;SAP=48.6112;SAR=0;SRF=40;SRP=89.8692;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|1:23:10,13:10:381:13:481:-36.7071,0,-27.7159 0|1:15:11,4:11:416:4:150:-9.35024,0,-33.2666 0|1:23:19,4:19:754:4:154:-7.3099,0,-61.2601 dDocent_Contig_6672 98 . N G 120.224 . AB=0;ABP=0;AC=2;AF=1;AN=2;AO=4;CIGAR=1X;DP=4;DPB=4;DPRA=0;EPP=11.6962;EPPR=0;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=0;NS=1;NUMALT=1;ODDS=7.37776;PAIRED=1;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=130;QR=0;RO=0;RPL=4;RPP=11.6962;RPPR=0;RPR=0;RUN=1;SAF=4;SAP=11.6962;SAR=0;SRF=0;SRP=0;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 1/1:4:0,4:0:0:4:130:-12.0221,-1.20412,0 ./.:.:.:.:.:.:.:. ./.:.:.:.:.:.:.:. dDocent_Contig_6678 41 . A T 45.9138 . AB=0.666667;ABP=3.73412;AC=1;AF=0.166667;AN=6;AO=2;CIGAR=1X;DP=35;DPB=35;DPRA=0.1875;EPP=7.35324;EPPR=74.6689;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=0;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=77;QR=1332;RO=33;RPL=0;RPP=7.35324;RPPR=74.6689;RPR=2;RUN=1;SAF=2;SAP=7.35324;SAR=0;SRF=33;SRP=74.6689;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:24:24,0:24:969:0:0:0,-7.22472,-87.5073 0/1:3:1,2:1:41:2:77:-6.40605,0,-3.19148 0/0:8:8,0:8:322:0:0:0,-2.40824,-29.3481 dDocent_Contig_6679 15 . T A 230.914 . AB=0.184615;ABP=59.1679;AC=1;AF=0.166667;AN=6;AO=12;CIGAR=1X;DP=84;DPB=84;DPRA=6.84211;EPP=29.068;EPPR=159.356;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=487;QR=2881;RO=72;RPL=0;RPP=29.068;RPPR=159.356;RPR=12;RUN=1;SAF=12;SAP=29.068;SAR=0;SRF=72;SRP=159.356;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:65:53,12:53:2117:12:487:-24.6141,0,-171.142 0/0:4:4,0:4:159:0:0:0,-1.20412,-14.6917 0/0:15:15,0:15:605:0:0:0,-4.51545,-54.7873 dDocent_Contig_6680 55 . A C 76.697 . AB=0.178571;ABP=28.1373;AC=1;AF=0.166667;AN=6;AO=5;CIGAR=1X;DP=61;DPB=61;DPRA=1.69697;EPP=13.8677;EPPR=124.613;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=0;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=195;QR=2242;RO=56;RPL=5;RPP=13.8677;RPPR=124.613;RPR=0;RUN=1;SAF=5;SAP=13.8677;SAR=0;SRF=56;SRP=124.613;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:23:23,0:23:924:0:0:0,-6.92369,-83.4639 0/0:10:10,0:10:398:0:0:0,-3.0103,-36.1759 0/1:28:23,5:23:920:5:195:-9.4936,0,-74.6762 dDocent_Contig_6681 72 . A C 66.3388 . AB=0;ABP=0;AC=2;AF=0.333333;AN=6;AO=2;CIGAR=1X;DP=30;DPB=30;DPRA=0.142857;EPP=7.35324;EPPR=63.8115;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=68;QR=993;RO=28;RPL=2;RPP=7.35324;RPPR=63.8115;RPR=0;RUN=1;SAF=2;SAP=7.35324;SAR=0;SRF=28;SRP=63.8115;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:20:20,0:20:705:0:0:0,-6.0206,-63.7567 0/0:8:8,0:8:288:0:0:0,-2.40824,-26.2648 1/1:2:0,2:0:0:2:68:-6.45742,-0.60206,0 dDocent_Contig_6683 35 . G A 180.396 . AB=0.0952381;ABP=32.8939;AC=0;AF=0;AN=6;AO=2;CIGAR=1X1M2I8M;DP=43;DPB=44.1;DPRA=1.90909;EPP=7.35324;EPPR=76.8404;GTI=0;LEN=1;MEANALT=2;MQM=60;MQMR=60;NS=3;NUMALT=2;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=75;QR=1332;RO=34;RPL=0;RPP=7.35324;RPPR=76.8404;RPR=2;RUN=1;SAF=2;SAP=7.35324;SAR=0;SRF=34;SRP=76.8404;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|0:21:12,2,7:12:479:2,7:75,281:-19.5624,-17.0378,-55.8859,0,-33.3328,-37.3649 0|0:7:7,0,0:7:272:0,0:0,0:0,-2.10721,-24.8459,-2.10721,-24.8459,-24.8459 0|0:15:15,0,0:15:581:0,0:0,0:0,-4.51545,-52.6257,-4.51545,-52.6257,-52.6257 dDocent_Contig_6684 77 . C A 497.136 . AB=0.317073;ABP=14.9269;AC=4;AF=0.666667;AN=6;AO=20;CIGAR=1X;DP=48;DPB=48;DPRA=0;EPP=46.4397;EPPR=63.8115;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=717;QR=1015;RO=28;RPL=20;RPP=46.4397;RPPR=63.8115;RPR=0;RUN=1;SAF=20;SAP=46.4397;SAR=0;SRF=28;SRP=63.8115;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:25:16,9:16:590:9:321:-21.7066,0,-45.9123 0/1:16:12,4:12:425:4:148:-8.86549,0,-33.7671 1/1:7:0,7:0:0:7:248:-22.6644,-2.10721,0 dDocent_Contig_6685 156 . G A 196.53 . AB=0.538462;ABP=3.17734;AC=1;AF=0.166667;AN=6;AO=7;CIGAR=1X;DP=33;DPB=33;DPRA=1.3;EPP=18.2106;EPPR=59.4686;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=278;QR=1015;RO=26;RPL=0;RPP=18.2106;RPPR=59.4686;RPR=7;RUN=1;SAF=0;SAP=18.2106;SAR=7;SRF=0;SRP=59.4686;SRR=26;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:17:17,0:17:667:0:0:0,-5.11751,-60.355 0/0:3:3,0:3:112:0:0:0,-0.90309,-10.4449 0/1:13:6,7:6:236:7:278:-21.4768,0,-17.6978 dDocent_Contig_6686 31 . G A 634.613 . AB=0.282828;ABP=43.5664;AC=3;AF=0.5;AN=6;AO=28;CIGAR=1X;DP=99;DPB=99;DPRA=0;EPP=63.8115;EPPR=157.185;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=1086;QR=2821;RO=71;RPL=0;RPP=63.8115;RPPR=157.185;RPR=28;RUN=1;SAF=28;SAP=63.8115;SAR=0;SRF=71;SRP=157.185;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:47:30,17:30:1192:17:672:-46.6614,0,-93.4021 0/1:21:15,6:15:596:6:230:-14.7409,0,-47.6529 0/1:31:26,5:26:1033:5:184:-7.58187,0,-83.929 dDocent_Contig_6687 48 . A G 140.492 . AB=0.140351;ABP=67.0497;AC=4;AF=0.666667;AN=6;AO=9;CIGAR=1X;DP=58;DPB=58;DPRA=0;EPP=22.5536;EPPR=109.412;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=0.222222;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=356;QR=1916;RO=49;RPL=0;RPP=22.5536;RPPR=109.412;RPR=9;RUN=1;SAF=9;SAP=22.5536;SAR=0;SRF=49;SRP=109.412;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:45:38,7:38:1476:7:275:-11.5713,0,-119.551 1/1:1:0,1:0:0:1:40:-3.99568,-0.30103,0 0/1:12:11,1:11:440:1:41:-0.482207,0,-36.3436 dDocent_Contig_6688 43 . G T 900.037 . AB=0.457143;ABP=4.12706;AC=3;AF=0.5;AN=6;AO=32;CIGAR=1X;DP=70;DPB=70;DPRA=0;EPP=72.4974;EPPR=17.6392;GTI=0;LEN=1;MEANALT=1;MQM=53.5;MQMR=34.1842;NS=3;NUMALT=1;ODDS=0;PAIRED=0;PAIREDR=0.157895;PAO=0;PQA=0;PQR=0;PRO=0;QA=1290;QR=1382;RO=38;RPL=0;RPP=72.4974;RPPR=69.0688;RPR=32;RUN=1;SAF=0;SAP=72.4974;SAR=32;SRF=9;SRP=25.8679;SRR=29;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:27:14,13:14:511:13:525:-39.1886,0,-26.405 0/1:10:7,3:7:257:3:122:-8.3209,0,-9.71441 0/1:33:17,16:17:614:16:643:-48.0171,0,-35.0096 dDocent_Contig_6689 17 . G A 376.567 . AB=0.236842;ABP=48.7255;AC=3;AF=0.5;AN=6;AO=18;CIGAR=1X;DP=76;DPB=76;DPRA=0;EPP=42.0968;EPPR=128.956;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=0.896552;PAO=0;PQA=0;PQR=0;PRO=0;QA=706;QR=2234;RO=58;RPL=0;RPP=42.0968;RPPR=128.956;RPR=18;RUN=1;SAF=18;SAP=42.0968;SAR=0;SRF=58;SRP=128.956;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:26:14,12:14:554:12:471:-34.911,0,-42.3752 0/1:28:24,4:24:928:4:159:-6.26291,0,-75.3829 0/1:22:20,2:20:752:2:76:-0.592014,0,-61.3577 dDocent_Contig_6690 11 . G T 565.628 . AB=0.12;ABP=34.3664;AC=0;AF=0;AN=6;AO=3;CIGAR=1X3M1X;DP=86;DPB=86;DPRA=0;EPP=9.52472;EPPR=126.784;GTI=0;LEN=1;MEANALT=2;MQM=60;MQMR=60;NS=3;NUMALT=2;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=121;QR=2190;RO=57;RPL=0;RPP=9.52472;RPPR=126.784;RPR=3;RUN=1;SAF=3;SAP=9.52472;SAR=0;SRF=57;SRP=126.784;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|0:45:31,0,13:31:1182:0,13:0,489:-30.6955,-40.0274,-136.99,0,-96.9333,-93.0199 0|0:16:12,0,4:12:464:0,4:0,161:-10.0588,-13.6712,-51.7713,0,-38.4983,-37.2941 0|0:25:14,3,8:14:544:3,8:121,311:-21.3314,-15.5676,-59.366,0,-34.7127,-42.2813 dDocent_Contig_6691 12 . C A 53.1627 . AB=0.153846;ABP=30.0702;AC=1;AF=0.166667;AN=6;AO=4;CIGAR=1X;DP=85;DPB=85;DPRA=0.881356;EPP=11.6962;EPPR=178.9;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=162;QR=3238;RO=81;RPL=0;RPP=11.6962;RPPR=178.9;RPR=4;RUN=1;SAF=4;SAP=11.6962;SAR=0;SRF=81;SRP=178.9;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:30:30,0:30:1190:0:0:0,-9.0309,-107.373 0/0:29:29,0:29:1164:0:0:0,-8.72987,-105.04 0/1:26:22,4:22:884:4:162:-7.14018,0,-72.0428 dDocent_Contig_6692 33 . C A 1530.91 . AB=0.473214;ABP=3.70827;AC=3;AF=0.5;AN=6;AO=53;CIGAR=1X;DP=112;DPB=112;DPRA=0;EPP=118.098;EPPR=131.127;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=0.981132;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=2126;QR=2355;RO=59;RPL=0;RPP=118.098;RPPR=131.127;RPR=53;RUN=1;SAF=53;SAP=118.098;SAR=0;SRF=59;SRP=131.127;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:89:47,42:47:1875:42:1697:-126.158,0,-142.167 0/1:5:1,4:1:41:4:151:-12.4489,0,-2.58942 0/1:18:11,7:11:439:7:278:-19.9707,0,-34.4442 dDocent_Contig_6693 11 . G C 4966.28 . AB=0.79;ABP=149.107;AC=3;AF=0.5;AN=6;AO=158;CIGAR=1X1M1X;DP=200;DPB=200;DPRA=0;EPP=346.103;EPPR=94.2121;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=0.949367;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=6242;QR=1629;RO=42;RPL=0;RPP=346.103;RPPR=94.2121;RPR=158;RUN=1;SAF=158;SAP=346.103;SAR=0;SRF=42;SRP=94.2121;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|1:115:23,92:23:882:92:3654:-294.284,0,-45.0641 0|1:15:4,11:4:156:11:425:-34.0858,0,-9.90137 0|1:70:15,55:15:591:55:2163:-173.781,0,-32.4586 dDocent_Contig_6694 69 . A G 46.029 . AB=0.6;ABP=3.44459;AC=1;AF=0.166667;AN=6;AO=3;CIGAR=1X;DP=21;DPB=21;DPRA=0.625;EPP=9.52472;EPPR=42.0968;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=85;QR=663;RO=18;RPL=3;RPP=9.52472;RPPR=42.0968;RPR=0;RUN=1;SAF=3;SAP=9.52472;SAR=0;SRF=18;SRP=42.0968;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:6:6,0:6:221:0:0:0,-1.80618,-20.2457 0/0:10:10,0:10:374:0:0:0,-3.0103,-34.0116 0/1:5:2,3:2:68:3:85:-6.42662,0,-4.95227 dDocent_Contig_6696 27 . T G 573.792 . AB=0.208633;ABP=105.507;AC=2;AF=0.5;AN=4;AO=29;CIGAR=1X;DP=139;DPB=139;DPRA=0;EPP=65.983;EPPR=241.872;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=2;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=1136;QR=4396;RO=110;RPL=0;RPP=65.983;RPPR=241.872;RPR=29;RUN=1;SAF=29;SAP=65.983;SAR=0;SRF=110;SRP=241.872;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:128:101,27:101:4030:27:1055:-56.7028,0,-324.145 ./.:.:.:.:.:.:.:. 0/1:11:9,2:9:366:2:81:-4.3744,0,-29.9932 dDocent_Contig_6697 115 . C T 30.1777 . AB=0.333333;ABP=4.45795;AC=1;AF=0.166667;AN=6;AO=2;CIGAR=1X;DP=27;DPB=27;DPRA=0.571429;EPP=7.35324;EPPR=57.2971;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=70;QR=841;RO=25;RPL=0;RPP=7.35324;RPPR=57.2971;RPR=2;RUN=1;SAF=0;SAP=7.35324;SAR=2;SRF=0;SRP=57.2971;SRR=25;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:16:16,0:16:527:0:0:0,-4.81648,-47.743 0/0:5:5,0:5:175:0:0:0,-1.50515,-16.0937 0/1:6:4,2:4:139:2:70:-4.84122,0,-11.0465 dDocent_Contig_6698 10 . G A 139.514 . AB=0.137255;ABP=119.589;AC=3;AF=0.5;AN=6;AO=14;CIGAR=1X;DP=102;DPB=102;DPRA=0;EPP=33.4109;EPPR=194.1;GTI=0;LEN=1;MEANALT=1;MQM=58.7143;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=540;QR=3470;RO=88;RPL=0;RPP=33.4109;RPPR=194.1;RPR=14;RUN=1;SAF=14;SAP=33.4109;SAR=0;SRF=88;SRP=194.1;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:84:74,10:74:2902:10:389:-10.0647,0,-235.999 0/1:5:4,1:4:161:1:30:-1.49442,0,-13.3701 0/1:13:10,3:10:407:3:121:-7.3666,0,-33.077 dDocent_Contig_6699 122 . T A 85.31 . AB=0.388889;ABP=4.9405;AC=1;AF=0.166667;AN=6;AO=9;CIGAR=1X;DP=43;DPB=43;DPRA=6.66667;EPP=22.5536;EPPR=76.8404;GTI=0;LEN=1;MEANALT=1;MQM=25;MQMR=59.1176;NS=3;NUMALT=1;ODDS=0;PAIRED=0;PAIREDR=0.941176;PAO=0;PQA=0;PQR=0;PRO=0;QA=322;QR=1152;RO=34;RPL=0;RPP=22.5536;RPPR=76.8404;RPR=9;RUN=1;SAF=0;SAP=22.5536;SAR=9;SRF=0;SRP=76.8404;SRR=34;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:22:20,2:20:677:2:72:0,-1.93554,-56.4948 0/0:3:3,0:3:104:0:0:0,-0.90309,-9.70309 0/1:18:11,7:11:371:7:250:-10.3547,0,-28.2971 dDocent_Contig_6700 23 . G C 175.242 . AB=0.142857;ABP=111.584;AC=3;AF=0.5;AN=6;AO=14;CIGAR=1X;DP=98;DPB=98;DPRA=0;EPP=33.4109;EPPR=185.414;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=571;QR=3360;RO=84;RPL=0;RPP=33.4109;RPPR=185.414;RPR=14;RUN=1;SAF=14;SAP=33.4109;SAR=0;SRF=84;SRP=185.414;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:52:46,6:46:1838:6:246:-6.86656,0,-149.967 0/1:5:3,2:3:120:2:82:-6.27453,0,-9.68216 0/1:41:35,6:35:1402:6:243:-9.90595,0,-114.09 dDocent_Contig_6701 14 . T C 503.057 . AB=0.375;ABP=11.6962;AC=4;AF=0.666667;AN=6;AO=33;CIGAR=1X;DP=73;DPB=73;DPRA=0;EPP=74.6689;EPPR=89.8692;GTI=0;LEN=1;MEANALT=1;MQM=34.4545;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=0;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=1085;QR=1612;RO=40;RPL=0;RPP=74.6689;RPPR=89.8692;RPR=33;RUN=1;SAF=33;SAP=74.6689;SAR=0;SRF=40;SRP=89.8692;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:36:25,11:25:1011:11:366:-11.0617,0,-80.4471 1/1:9:0,9:0:0:9:287:-24.8493,-2.70927,0 0/1:28:15,13:15:601:13:432:-17.9176,0,-45.999 dDocent_Contig_6702 7 . T C 36.8217 . AB=0.333333;ABP=4.45795;AC=1;AF=0.166667;AN=6;AO=2;CIGAR=1X;DP=51;DPB=51;DPRA=0.266667;EPP=7.35324;EPPR=109.412;GTI=0;LEN=1;MEANALT=1;MQM=48;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=0;PAIREDR=0.959184;PAO=0;PQA=0;PQR=0;PRO=0;QA=78;QR=1887;RO=49;RPL=0;RPP=7.35324;RPPR=109.412;RPR=2;RUN=1;SAF=2;SAP=7.35324;SAR=0;SRF=49;SRP=109.412;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:29:29,0:29:1115:0:0:0,-8.72987,-100.653 0/1:6:4,2:4:155:2:78:-5.50599,0,-12.5193 0/0:16:16,0:16:617:0:0:0,-4.81648,-55.8695 dDocent_Contig_6703 34 . G A 155.517 . AB=0.0923077;ABP=96.8513;AC=3;AF=0.5;AN=6;AO=6;CIGAR=2X3M1X;DP=69;DPB=69;DPRA=0;EPP=16.0391;EPPR=111.584;GTI=0;LEN=1;MEANALT=2.5;MQM=60;MQMR=60;NS=3;NUMALT=3;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=234;QR=1931;RO=50;RPL=0;RPP=16.0391;RPPR=111.584;RPR=6;RUN=1;SAF=6;SAP=16.0391;SAR=0;SRF=50;SRP=111.584;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|1:45:33,5,2,5:33:1275:5,2,5:200,74,197:-6.54616,0,-103.21,-10.431,-98.6621,-114.536,-0.271443,-88.5062,-98.9301,-103.478 0|1:4:1,0,3,0:1:38:0,3,0:0,115,0:-9.51909,-9.82012,-12.9358,0,-3.49624,-2.59315,-9.82012,-12.9358,-3.49624,-12.9358 0|1:20:16,3,0,1:16:618:3,0,1:118,0,37:-4.90757,0,-49.8685,-9.72405,-50.7716,-60.4795,-6.70283,-47.7455,-57.4533,-57.1523 dDocent_Contig_6704 8 . T A 5013.68 . AB=0.200615;ABP=1015.88;AC=3;AF=0.5;AN=6;AO=261;CIGAR=1X1M;DP=1301;DPB=1301;DPRA=0;EPP=569.765;EPPR=2167.97;GTI=0;LEN=1;MEANALT=3;MQM=58.4904;MQMR=53.3731;NS=3;NUMALT=2;ODDS=0;PAIRED=0.908046;PAIREDR=0.971916;PAO=0;PQA=0;PQR=0;PRO=0;QA=9897;QR=38130;RO=997;RPL=0;RPP=569.765;RPPR=2167.97;RPR=261;RUN=1;SAF=261;SAP=569.765;SAR=0;SRF=997;SRP=2167.97;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|1:948:739,31,174:739:28305:31,174:1192,6639:-319.498,-448.02,-2716.18,0,-2183.56,-2225.12 0|1:59:35,3,21:35:1323:3,21:115,763:-51.2461,-53.9709,-157.641,0,-96.7969,-98.2878 0|1:294:223,0,66:223:8502:0,66:0,2495:-136.147,-203.277,-889.92,0,-686.645,-666.778 dDocent_Contig_6705 14 . A T 34.6929 . AB=0.25;ABP=7.35324;AC=1;AF=0.166667;AN=6;AO=2;CIGAR=3X;DP=86;DPB=86;DPRA=0.380952;EPP=7.35324;EPPR=172.385;GTI=0;LEN=1;MEANALT=2;MQM=60;MQMR=60;NS=3;NUMALT=2;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=82;QR=3098;RO=78;RPL=0;RPP=7.35324;RPPR=172.385;RPR=2;RUN=1;SAF=2;SAP=7.35324;SAR=0;SRF=78;SRP=172.385;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|0:57:52,0,5:52:2072:0,5:0,200:-1.22032,-16.8739,-187.49,0,-171.016,-169.51 0|1:8:5,2,1:5:200:2,1:82,40:-5.2696,0,-15.8723,-3.48297,-13.1792,-19.6492 0|0:21:21,0,0:21:826:0,0:0,0:0,-6.32163,-74.6491,-6.32163,-74.6491,-74.6491 dDocent_Contig_6706 39 . T C 72.427 . AB=0.176471;ABP=33.9218;AC=3;AF=0.5;AN=6;AO=6;CIGAR=1X;DP=34;DPB=34;DPRA=0;EPP=16.0391;EPPR=63.8115;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=242;QR=1139;RO=28;RPL=0;RPP=16.0391;RPPR=63.8115;RPR=6;RUN=1;SAF=6;SAP=16.0391;SAR=0;SRF=28;SRP=63.8115;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:17:15,2:15:608:2:81:-2.56822,0,-49.9408 0/1:6:4,2:4:164:2:79:-5.69106,0,-13.3437 0/1:11:9,2:9:367:2:82:-4.46835,0,-30.0839 dDocent_Contig_6707 108 . T A 54.7114 . AB=0.375;ABP=4.09604;AC=1;AF=0.166667;AN=6;AO=3;CIGAR=1X;DP=18;DPB=18;DPRA=1.6;EPP=9.52472;EPPR=35.5824;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=104;QR=487;RO=15;RPL=0;RPP=9.52472;RPPR=35.5824;RPR=3;RUN=1;SAF=0;SAP=9.52472;SAR=3;SRF=0;SRP=35.5824;SRR=15;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:3:3,0:3:99:0:0:0,-0.90309,-9.23746 0/1:8:5,3:5:170:3:104:-7.29485,0,-13.2263 0/0:7:7,0:7:218:0:0:0,-2.10721,-19.9267 dDocent_Contig_6710 126 . G A 65.3189 . AB=0.25;ABP=16.0391;AC=1;AF=0.166667;AN=6;AO=10;CIGAR=1X;DP=127;DPB=127;DPRA=0;EPP=24.725;EPPR=257.073;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=49.094;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=0.752137;PAO=0;PQA=0;PQR=0;PRO=0;QA=265;QR=3967;RO=117;RPL=0;RPP=24.725;RPPR=257.073;RPR=10;RUN=1;SAF=0;SAP=24.725;SAR=10;SRF=0;SRP=257.073;SRR=117;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:66:64,2:64:2139:2:58:0,-14.3591,-173.089 0/1:24:18,6:18:620:6:170:-8.3558,0,-25.7637 0/0:37:35,2:35:1208:2:37:0,-7.62352,-94.7556 dDocent_Contig_6711 17 . A C 111.526 . AB=0.2;ABP=22.5536;AC=4;AF=0.666667;AN=6;AO=6;CIGAR=1X;DP=26;DPB=26;DPRA=0;EPP=16.0391;EPPR=46.4397;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=234;QR=783;RO=20;RPL=0;RPP=16.0391;RPPR=46.4397;RPR=6;RUN=1;SAF=6;SAP=16.0391;SAR=0;SRF=20;SRP=46.4397;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:15:13,2:13:506:2:78:-2.88785,0,-41.367 1/1:1:0,1:0:0:1:35:-3.49863,-0.30103,0 0/1:10:7,3:7:277:3:121:-8.2699,0,-22.2896 dDocent_Contig_6712 62 . A C 31.72 . AB=0.222222;ABP=9.04217;AC=1;AF=0.166667;AN=6;AO=2;CIGAR=1X;DP=17;DPB=17;DPRA=2.25;EPP=7.35324;EPPR=35.5824;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=0;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=78;QR=570;RO=15;RPL=2;RPP=7.35324;RPPR=35.5824;RPR=0;RUN=1;SAF=2;SAP=7.35324;SAR=0;SRF=15;SRP=35.5824;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:9:7,2:7:269:2:78:-4.6942,0,-21.8649 0/0:2:2,0:2:68:0:0:0,-0.60206,-6.45771 0/0:6:6,0:6:233:0:0:0,-1.80618,-21.3401 dDocent_Contig_6713 21 . G T 401.051 . AB=0.157576;ABP=171.056;AC=2;AF=0.333333;AN=6;AO=28;CIGAR=1X;DP=194;DPB=194;DPRA=0;EPP=63.8115;EPPR=363.475;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=58.988;NS=3;NUMALT=1;ODDS=1.38778e-17;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=1106;QR=6607;RO=166;RPL=0;RPP=63.8115;RPPR=363.475;RPR=28;RUN=1;SAF=28;SAP=63.8115;SAR=0;SRF=166;SRP=363.475;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:105:94,11:94:3776:11:435:-7.892,0,-307.988 0/0:29:27,2:27:1046:2:77:0,-1.42167,-86.9957 0/1:60:45,15:45:1785:15:594:-35.7359,0,-142.762 dDocent_Contig_6714 9 . T G 3542.01 . AB=0.651515;ABP=29.3312;AC=4;AF=0.666667;AN=6;AO=116;CIGAR=1X;DP=162;DPB=162;DPRA=0;EPP=254.901;EPPR=102.898;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=0;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=4407;QR=1782;RO=46;RPL=0;RPP=254.901;RPPR=102.898;RPR=116;RUN=1;SAF=116;SAP=254.901;SAR=0;SRF=46;SRP=102.898;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:68:34,34:34:1316:34:1288:-95.7385,0,-98.2571 1/1:30:0,30:0:0:30:1152:-103.98,-9.0309,0 0/1:64:12,52:12:466:52:1967:-158.006,0,-23.0262 dDocent_Contig_6715 84 . T A 265.981 . AB=0.283019;ABP=24.6841;AC=3;AF=0.5;AN=6;AO=15;CIGAR=1X;DP=53;DPB=53;DPRA=0;EPP=35.5824;EPPR=85.5263;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=0.868421;PAO=0;PQA=0;PQR=0;PRO=0;QA=522;QR=1304;RO=38;RPL=15;RPP=35.5824;RPPR=85.5263;RPR=0;RUN=1;SAF=15;SAP=35.5824;SAR=0;SRF=38;SRP=85.5263;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:26:21,5:21:721:5:174:-8.17517,0,-57.3832 0/1:4:3,1:3:99:1:35:-2.29451,0,-8.033 0/1:23:14,9:14:484:9:313:-21.5834,0,-36.966 dDocent_Contig_6716 10 . G A 1319.01 . AB=0.199387;ABP=258.898;AC=3;AF=0.5;AN=6;AO=65;CIGAR=1X;DP=326;DPB=326;DPRA=0;EPP=144.156;EPPR=569.765;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=56.3218;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=2607;QR=10437;RO=261;RPL=0;RPP=144.156;RPPR=569.765;RPR=65;RUN=1;SAF=65;SAP=144.156;SAR=0;SRF=261;SRP=569.765;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:190:150,40:150:5989:40:1603:-87.3048,0,-461.161 0/1:33:29,4:29:1142:4:162:-5.03276,0,-92.0193 0/1:103:82,21:82:3306:21:842:-45.0858,0,-262.728 dDocent_Contig_6717 46 . T A 149.944 . AB=0.178571;ABP=53.2644;AC=2;AF=0.333333;AN=6;AO=12;CIGAR=1X;DP=122;DPB=122;DPRA=0;EPP=29.068;EPPR=3.1896;GTI=0;LEN=1;MEANALT=1.33333;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=465;QR=4109;RO=109;RPL=12;RPP=29.068;RPPR=3.1896;RPR=0;RUN=1;SAF=12;SAP=29.068;SAR=0;SRF=109;SRP=239.701;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:66:63,2:63:2386:2:81:0,-12.289,-207.253 0/1:17:11,6:11:409:6:233:-16.2205,0,-32.0349 0/1:39:35,4:35:1314:4:151:-2.21679,0,-106.808 dDocent_Contig_6718 22 . T A 185.096 . AB=0.388889;ABP=4.9405;AC=1;AF=0.166667;AN=6;AO=7;CIGAR=1X;DP=89;DPB=89;DPRA=0.507042;EPP=10.7656;EPPR=181.071;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=0.714286;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=282;QR=3225;RO=82;RPL=0;RPP=18.2106;RPPR=181.071;RPR=7;RUN=1;SAF=6;SAP=10.7656;SAR=1;SRF=82;SRP=181.071;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:60:60,0:60:2360:0:0:0,-18.0618,-212.561 0/1:18:11,7:11:440:7:282:-20.3335,0,-34.5369 0/0:11:11,0:11:425:0:0:0,-3.31133,-38.5989 dDocent_Contig_6719 23 . G C 345.8 . AB=0.333333;ABP=13.1438;AC=3;AF=0.5;AN=6;AO=14;CIGAR=1X;DP=42;DPB=42;DPRA=0;EPP=33.4109;EPPR=63.8115;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=569;QR=1120;RO=28;RPL=0;RPP=33.4109;RPPR=63.8115;RPR=14;RUN=1;SAF=14;SAP=33.4109;SAR=0;SRF=28;SRP=63.8115;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:24:18,6:18:718:6:246:-15.2954,0,-57.7236 0/1:10:3,7:3:118:7:282:-22.7423,0,-7.99221 0/1:8:7,1:7:284:1:41:-1.68633,0,-23.5258 dDocent_Contig_6720 10 . T G 15646.8 . AB=0.714286;ABP=296.159;AC=3;AF=0.5;AN=6;AO=525;CIGAR=1X;DP=735;DPB=735;DPRA=0;EPP=1143.03;EPPR=428.619;GTI=0;LEN=1;MEANALT=2;MQM=53.3771;MQMR=47.6633;NS=3;NUMALT=1;ODDS=0;PAIRED=0.958095;PAIREDR=0.994898;PAO=0;PQA=0;PQR=0;PRO=0;QA=20839;QR=7859;RO=196;RPL=0;RPP=1143.03;RPPR=428.619;RPR=525;RUN=1;SAF=525;SAP=1143.03;SAR=0;SRF=196;SRP=428.619;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:389:118,264:118:4753:264:10494:-779.658,0,-241.241 0/1:101:20,81:20:807:81:3228:-245.382,0,-22.4772 0/1:245:58,180:58:2299:180:7117:-545.162,0,-97.2141 dDocent_Contig_6721 21 . A T 87.7604 . AB=0.05;ABP=108.544;AC=0;AF=0;AN=6;AO=7;CIGAR=2X1M;DP=331;DPB=331;DPRA=0;EPP=18.2106;EPPR=587.136;GTI=0;LEN=1;MEANALT=6;MQM=60;MQMR=58.2193;NS=3;NUMALT=3;ODDS=2.77556e-17;PAIRED=1;PAIREDR=0.483271;PAO=0;PQA=0;PQR=0;PRO=0;QA=278;QR=10722;RO=269;RPL=0;RPP=18.2106;RPPR=587.136;RPR=7;RUN=1;SAF=7;SAP=18.2106;SAR=0;SRF=269;SRP=587.136;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|0:138:115,4,3,9:115:4581:4,3,9:162,122,355:0,-21.2594,-392.135,-24.5545,-383.276,-395.731,-5.41707,-364.133,-367.428,-374.782 0|0:60:42,4,3,7:42:1665:4,3,7:160,122,282:-10.6,-10.0647,-142.861,-13.1792,-134.001,-146.278,0,-120.821,-123.937,-131.893 0|0:133:112,6,1,1:112:4476:6,1,1:240,34,40:0,-13.943,-372.099,-30.9601,-371.147,-390.617,-30.42,-370.61,-387.623,-390.08 dDocent_Contig_6722 10 . G A 197.684 . AB=0.151163;ABP=93.9091;AC=2;AF=0.333333;AN=6;AO=13;CIGAR=2X2M1X;DP=93;DPB=93;DPRA=0;EPP=23.2217;EPPR=168.042;GTI=0;LEN=1;MEANALT=1.5;MQM=52.1538;MQMR=60;NS=3;NUMALT=2;ODDS=0;PAIRED=0.769231;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=510;QR=2959;RO=76;RPL=0;RPP=31.2394;RPPR=168.042;RPR=13;RUN=1;SAF=12;SAP=23.2217;SAR=1;SRF=76;SRP=168.042;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|1:62:53,8,1:53:2052:8,1:312,40:-8.59155,0,-166.143,-21.5186,-165.524,-189.763 0|0:7:4,0,3:4:162:0,3:0,110:-8.15133,-9.35545,-22.7356,0,-13.7628,-12.8597 0|1:24:19,5,0:19:745:5,0:198,0:-8.54837,0,-60.1463,-14.2679,-61.6515,-75.5664 dDocent_Contig_6723 34 . G A 268.866 . AB=0.5;ABP=3.0103;AC=1;AF=0.166667;AN=6;AO=26;CIGAR=1X3M1X;DP=272;DPB=272;DPRA=0;EPP=59.4686;EPPR=537.193;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=1.38778e-17;PAIRED=0;PAIREDR=0.99187;PAO=0;PQA=0;PQR=0;PRO=0;QA=1026;QR=9630;RO=246;RPL=0;RPP=59.4686;RPPR=537.193;RPR=26;RUN=1;SAF=26;SAP=59.4686;SAR=0;SRF=246;SRP=537.193;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|0:182:169,13:169:6661:13:526:0,-7.10009,-551.583 0|1:20:10,10:10:383:10:382:-28.7105,0,-28.8016 0|0:70:67,3:67:2586:3:118:0,-10.0699,-221.906 dDocent_Contig_6724 12 . C T 157.662 . AB=0.1875;ABP=43.7254;AC=1;AF=0.166667;AN=6;AO=12;CIGAR=1X;DP=261;DPB=261;DPRA=0;EPP=29.068;EPPR=543.707;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=474;QR=10001;RO=249;RPL=0;RPP=29.068;RPPR=543.707;RPR=12;RUN=1;SAF=12;SAP=29.068;SAR=0;SRF=249;SRP=543.707;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:156:155,1:155:6243:1:41:0,-42.8661,-557.505 0/1:48:39,9:39:1548:9:352:-17.5901,0,-125.113 0/0:57:55,2:55:2210:2:81:0,-9.47298,-191.378 dDocent_Contig_6725 129 . G A 47.8746 . AB=0.210526;ABP=16.8392;AC=1;AF=0.25;AN=4;AO=4;CIGAR=1X;DP=29;DPB=29;DPRA=1.9;EPP=11.6962;EPPR=57.2971;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=2;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=132;QR=840;RO=25;RPL=0;RPP=11.6962;RPPR=57.2971;RPR=4;RUN=1;SAF=0;SAP=11.6962;SAR=4;SRF=0;SRP=57.2971;SRR=25;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:19:15,4:15:517:4:132:-6.48643,0,-41.1381 ./.:.:.:.:.:.:.:. 0/0:10:10,0:10:323:0:0:0,-3.0103,-29.3841 dDocent_Contig_6726 10 . G A 5144.21 . AB=0.835052;ABP=192.175;AC=3;AF=0.5;AN=6;AO=162;CIGAR=1X;DP=194;DPB=194;DPRA=0;EPP=354.789;EPPR=72.4974;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=6420;QR=1279;RO=32;RPL=0;RPP=354.789;RPPR=72.4974;RPR=162;RUN=1;SAF=162;SAP=354.789;SAR=0;SRF=32;SRP=72.4974;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:105:20,85:20:814:85:3364:-271.212,0,-41.966 0/1:19:4,15:4:163:15:614:-49.8769,0,-9.33886 0/1:70:8,62:8:302:62:2442:-198.855,0,-6.45948 dDocent_Contig_6727 79 . C T 113.595 . AB=0.315789;ABP=8.61041;AC=1;AF=0.166667;AN=6;AO=6;CIGAR=1X;DP=31;DPB=31;DPRA=3.16667;EPP=16.0391;EPPR=57.2971;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=203;QR=879;RO=25;RPL=6;RPP=16.0391;RPPR=57.2971;RPR=0;RUN=1;SAF=6;SAP=16.0391;SAR=0;SRF=25;SRP=57.2971;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:19:13,6:13:461:6:203:-12.8823,0,-36.1059 0/0:4:4,0:4:142:0:0:0,-1.20412,-13.1292 0/0:8:8,0:8:276:0:0:0,-2.40824,-25.1759 dDocent_Contig_6728 36 . A C 259.1 . AB=0.212121;ABP=50.5195;AC=3;AF=0.5;AN=6;AO=14;CIGAR=1X;DP=66;DPB=66;DPRA=0;EPP=33.4109;EPPR=115.927;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=550;QR=2034;RO=52;RPL=0;RPP=33.4109;RPPR=115.927;RPR=14;RUN=1;SAF=14;SAP=33.4109;SAR=0;SRF=52;SRP=115.927;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:25:20,5:20:776:5:198:-10.6707,0,-62.6289 0/1:21:19,2:19:728:2:81:-1.3641,0,-59.5223 0/1:20:13,7:13:530:7:271:-18.7299,0,-42.026 dDocent_Contig_6729 10 . G A 246.081 . AB=0.25;ABP=26.8965;AC=3;AF=0.5;AN=6;AO=11;CIGAR=1X;DP=44;DPB=44;DPRA=0;EPP=26.8965;EPPR=74.6689;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=0.818182;PAO=0;PQA=0;PQR=0;PRO=0;QA=442;QR=1332;RO=33;RPL=0;RPP=26.8965;RPPR=74.6689;RPR=11;RUN=1;SAF=11;SAP=26.8965;SAR=0;SRF=33;SRP=74.6689;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:23:14,9:14:563:9:363:-26.1095,0,-44.0883 0/1:10:9,1:9:363:1:41:-1.08427,0,-30.0244 0/1:11:10,1:10:406:1:38:-0.485939,0,-33.5887 dDocent_Contig_6730 25 . A T 156.483 . AB=0.2;ABP=18.6449;AC=3;AF=0.5;AN=6;AO=8;CIGAR=1X;DP=46;DPB=46;DPRA=0;EPP=20.3821;EPPR=85.5263;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=290;QR=1473;RO=38;RPL=0;RPP=20.3821;RPPR=85.5263;RPR=8;RUN=1;SAF=8;SAP=20.3821;SAR=0;SRF=38;SRP=85.5263;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 1/1:3:0,3:0:0:3:100:-9.32742,-0.90309,0 0/1:20:16,4:16:623:4:150:-7.84359,0,-50.3821 0/0:23:22,1:22:850:1:40:0,-2.92801,-72.81 dDocent_Contig_6731 31 . T G 5617.73 . AB=0.71875;ABP=109.412;AC=3;AF=0.5;AN=6;AO=184;CIGAR=1X;DP=256;DPB=256;DPRA=0;EPP=402.561;EPPR=157.185;GTI=0;LEN=1;MEANALT=1.33333;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=7154;QR=2801;RO=71;RPL=0;RPP=402.561;RPPR=157.185;RPR=184;RUN=1;SAF=184;SAP=402.561;SAR=0;SRF=71;SRP=157.185;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:177:53,123:53:2088:123:4780:-376.85,0,-134.797 0/1:28:5,23:5:202:23:895:-72.4316,0,-10.133 0/1:51:13,38:13:511:38:1479:-118.014,0,-30.9815 dDocent_Contig_6732 64 . A T 890.994 . AB=0.388235;ABP=12.2327;AC=3;AF=0.5;AN=6;AO=33;CIGAR=1X;DP=85;DPB=85;DPRA=0;EPP=74.6689;EPPR=113.755;GTI=0;LEN=1;MEANALT=1.33333;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=1325;QR=2019;RO=51;RPL=33;RPP=74.6689;RPPR=113.755;RPR=0;RUN=1;SAF=33;SAP=74.6689;SAR=0;SRF=51;SRP=113.755;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:54:30,24:30:1210:24:972:-71.5219,0,-92.9175 0/1:9:4,5:4:162:5:202:-15.8522,0,-12.2577 0/1:22:17,4:17:647:4:151:-7.24816,0,-51.8522 dDocent_Contig_6733 22 . G A 341.22 . AB=0.150327;ABP=165.502;AC=3;AF=0.5;AN=6;AO=23;CIGAR=1X;DP=153;DPB=153;DPRA=0;EPP=52.9542;EPPR=285.302;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=0.992308;PAO=0;PQA=0;PQR=0;PRO=0;QA=927;QR=5217;RO=130;RPL=0;RPP=52.9542;RPPR=285.302;RPR=23;RUN=1;SAF=23;SAP=52.9542;SAR=0;SRF=130;SRP=285.302;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:126:107,19:107:4288:19:764:-31.153,0,-347.935 0/1:4:2,2:2:82:2:81:-6.48161,0,-6.57556 0/1:23:21,2:21:847:2:82:-0.855988,0,-69.6188 dDocent_Contig_6734 23 . T C 1341.32 . AB=0.420168;ABP=9.59771;AC=3;AF=0.5;AN=6;AO=50;CIGAR=1X;DP=119;DPB=119;DPRA=0;EPP=111.584;EPPR=152.842;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=1939;QR=2596;RO=69;RPL=0;RPP=111.584;RPPR=152.842;RPR=50;RUN=1;SAF=50;SAP=111.584;SAR=0;SRF=69;SRP=152.842;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:81:46,35:46:1715:35:1365:-98.7231,0,-130.208 0/1:22:14,8:14:536:8:291:-19.905,0,-41.956 0/1:16:9,7:9:345:7:283:-21.0269,0,-26.5843 dDocent_Contig_6735 9 . T A 60.9864 . AB=0.0934579;ABP=156.617;AC=2;AF=0.333333;AN=6;AO=12;CIGAR=3M1X1M;DP=139;DPB=135.6;DPRA=0;EPP=29.068;EPPR=239.701;GTI=0;LEN=1;MEANALT=2.33333;MQM=60;MQMR=51.4679;NS=3;NUMALT=2;ODDS=0;PAIRED=1;PAIREDR=0.752294;PAO=0;PQA=0;PQR=0;PRO=0;QA=467;QR=4208;RO=109;RPL=0;RPP=29.068;RPPR=239.701;RPR=12;RUN=1;SAF=12;SAP=29.068;SAR=0;SRF=109;SRP=239.701;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|1:80:60,12,8:60:2329:12,8:452,311:-7.61924,-20.8439,-177.627,0,-155.675,-158.248 0|1:27:21,4,2:21:810:4,2:153,78:-0.193357,-5.04683,-67.4691,0,-62.2598,-63.2859 0|0:32:28,1,2:28:1069:1,2:38,78:0,-8.08597,-92.4134,-1.93469,-86.3013,-86.1083 dDocent_Contig_6736 15 . G A 1441.13 . AB=0.206897;ABP=24.6501;AC=1;AF=0.166667;AN=6;AO=6;CIGAR=1M1D3M1X;DP=66;DPB=57.6667;DPRA=0;EPP=16.0391;EPPR=37.7539;GTI=0;LEN=1;MEANALT=2;MQM=60;MQMR=60;NS=3;NUMALT=2;ODDS=0;PAIRED=0.5;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=207;QR=631;RO=16;RPL=0;RPP=16.0391;RPPR=37.7539;RPR=6;RUN=1;SAF=6;SAP=16.0391;SAR=0;SRF=16;SRP=37.7539;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|0:37:10,0,27:10:395:0,27:0,1083:-86.6207,-89.631,-122.133,0,-32.8986,-24.7708 1|0:13:0,3,10:0:0:3,10:114,404:-43.0533,-33.7098,-32.8067,-9.72872,0,-6.71842 0|0:16:6,3,7:6:236:3,7:93,265:-19.962,-14.3233,-32.8392,0,-12.0298,-17.3603 dDocent_Contig_6737 15 . T A 1192.02 . AB=0.207547;ABP=81.7569;AC=4;AF=0.666667;AN=6;AO=22;CIGAR=1X4M;DP=106;DPB=106;DPRA=0;EPP=50.7827;EPPR=98.5551;GTI=0;LEN=1;MEANALT=2;MQM=60;MQMR=60;NS=3;NUMALT=2;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=893;QR=1737;RO=44;RPL=0;RPP=50.7827;RPPR=98.5551;RPR=22;RUN=1;SAF=22;SAP=50.7827;SAR=0;SRF=44;SRP=98.5551;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|1:58:26,18,14:26:1052:18,14:710,567:-50.58,0,-81.3205,-11.6492,-39.9859,-94.1801 1|1:5:0,3,2:0:0:3,2:119,82:-16.9649,-7.17762,-6.27453,-10.1914,0,-9.58935 0|1:43:18,19,6:18:685:19,6:760,244:-57.1803,0,-50.4321,-42.4708,-36.0186,-96.8263 dDocent_Contig_6738 15 . T C 983.444 . AB=0.256881;ABP=58.9705;AC=3;AF=0.5;AN=6;AO=28;CIGAR=1X1M;DP=109;DPB=109;DPRA=0;EPP=63.8115;EPPR=118.098;GTI=0;LEN=1;MEANALT=1.66667;MQM=60;MQMR=60;NS=3;NUMALT=2;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=1115;QR=2101;RO=53;RPL=0;RPP=63.8115;RPPR=118.098;RPR=28;RUN=1;SAF=28;SAP=63.8115;SAR=0;SRF=53;SRP=118.098;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|1:62:24,23,15:24:953:23,15:928,594:-69.2766,0,-71.5262,-27.6208,-29.5668,-101.551 0|1:17:6,5,6:6:235:5,6:202,244:-18.3215,-3.47572,-21.2844,0,-2.65586,-17.5085 0|1:30:23,0,7:23:913:0,7:0,277:-16.2688,-23.1925,-98.351,0,-75.5541,-73.4468 dDocent_Contig_6741 209 . N G 114.653 . AB=0;ABP=0;AC=2;AF=1;AN=2;AO=3;CIGAR=1X;DP=3;DPB=3;DPRA=0;EPP=9.52472;EPPR=0;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=0;NS=1;NUMALT=1;ODDS=6.68461;PAIRED=1;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=123;QR=0;RO=0;RPL=3;RPP=9.52472;RPPR=0;RPR=0;RUN=1;SAF=0;SAP=9.52472;SAR=3;SRF=0;SRP=0;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 1/1:3:0,3:0:0:3:123:-11.4648,-0.90309,0 ./.:.:.:.:.:.:.:. ./.:.:.:.:.:.:.:. dDocent_Contig_6742 39 . C A 2210.14 . AB=0.782609;ABP=66.8327;AC=4;AF=0.666667;AN=6;AO=77;CIGAR=1X;DP=97;DPB=97;DPRA=0;EPP=170.214;EPPR=46.4397;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=2792;QR=737;RO=20;RPL=0;RPP=170.214;RPPR=46.4397;RPR=77;RUN=1;SAF=77;SAP=170.214;SAR=0;SRF=20;SRP=46.4397;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:65:8,57:8:294:57:2064:-166.457,0,-7.24543 1/1:5:0,5:0:0:5:179:-16.4595,-1.50515,0 0/1:27:12,15:12:443:15:549:-41.6207,0,-32.0881 dDocent_Contig_6743 23 . T G 100.174 . AB=0.193548;ABP=28.2974;AC=2;AF=0.333333;AN=6;AO=6;CIGAR=1X;DP=38;DPB=38;DPRA=2.21429;EPP=16.0391;EPPR=72.4974;GTI=0;LEN=1;MEANALT=1;MQM=50.6667;MQMR=60;NS=3;NUMALT=1;ODDS=1.73472e-18;PAIRED=0;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=238;QR=1247;RO=32;RPL=0;RPP=16.0391;RPPR=72.4974;RPR=6;RUN=1;SAF=6;SAP=16.0391;SAR=0;SRF=32;SRP=72.4974;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:23:18,5:18:706:5:202:-11.5245,0,-56.9436 0/1:8:7,1:7:265:1:36:-1.04625,0,-21.8027 0/0:7:7,0:7:276:0:0:0,-2.10721,-25.2083 dDocent_Contig_6744 35 . T G 67.4596 . AB=0.12963;ABP=67.3502;AC=2;AF=0.333333;AN=6;AO=7;CIGAR=1X;DP=72;DPB=72;DPRA=1.5;EPP=18.2106;EPPR=144.156;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=286;QR=2628;RO=65;RPL=0;RPP=18.2106;RPPR=144.156;RPR=7;RUN=1;SAF=7;SAP=18.2106;SAR=0;SRF=65;SRP=144.156;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:48:43,5:43:1735:5:204:-4.29459,0,-141.913 0/1:6:4,2:4:163:2:82:-5.9735,0,-13.2522 0/0:18:18,0:18:730:0:0:0,-5.41854,-66.0248 dDocent_Contig_6745 8 . T A 138.298 . 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AB=0.5;ABP=3.0103;AC=2;AF=0.5;AN=4;AO=13;CIGAR=1X;DP=26;DPB=26;DPRA=0;EPP=31.2394;EPPR=31.2394;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=2;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=529;QR=497;RO=13;RPL=0;RPP=31.2394;RPPR=31.2394;RPR=13;RUN=1;SAF=13;SAP=31.2394;SAR=0;SRF=13;SRP=31.2394;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:14:7,7:7:282:7:285:-21.8098,0,-21.5377 ./.:.:.:.:.:.:.:. 0/1:12:6,6:6:215:6:244:-18.7263,0,-16.0754 dDocent_Contig_6747 10 . C A 374.719 . 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AB=0.307692;ABP=7.18621;AC=1;AF=0.25;AN=4;AO=4;CIGAR=1X;DP=30;DPB=30;DPRA=0.764706;EPP=11.6962;EPPR=59.4686;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=2;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=164;QR=1043;RO=26;RPL=0;RPP=11.6962;RPPR=59.4686;RPR=4;RUN=1;SAF=4;SAP=11.6962;SAR=0;SRF=26;SRP=59.4686;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:13:9,4:9:362:4:164:-11.2365,0,-29.0308 ./.:.:.:.:.:.:.:. 0/0:17:17,0:17:681:0:0:0,-5.11751,-61.6206 dDocent_Contig_6749 14 . G A 401.998 . 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AB=0.552941;ABP=5.07959;AC=4;AF=0.666667;AN=6;AO=47;CIGAR=1X3M;DP=85;DPB=85;DPRA=0;EPP=105.07;EPPR=44.2683;GTI=0;LEN=1;MEANALT=2.66667;MQM=60;MQMR=60;NS=3;NUMALT=3;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=1795;QR=748;RO=19;RPL=0;RPP=105.07;RPPR=44.2683;RPR=47;RUN=1;SAF=47;SAP=105.07;SAR=0;SRF=19;SRP=44.2683;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|1:38:8,7,1,22:8:317:7,1,22:268,40,847:-67.1366,-47.5525,-71.5409,-66.2492,-70.3526,-92.0436,0,-4.1115,-22.8028,-19.4758 1|1:21:0,5,0,16:0:0:5,0,16:187,0,601:-64.9187,-49.6072,-48.102,-64.9187,-49.6072,-64.9187,-15.6857,0,-15.6857,-10.8692 0|1:26:11,4,2,9:11:431:4,2,9:150,80,347:-25.1848,-16.2151,-50.4551,-21.9036,-45.068,-56.7482,0,-23.1675,-28.8561,-32.7385 dDocent_Contig_6752 102 . N A 482.69 . 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AB=0.666667;ABP=3.73412;AC=1;AF=0.166667;AN=6;AO=2;CIGAR=1X;DP=31;DPB=31;DPRA=0.214286;EPP=3.0103;EPPR=65.983;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=49.4138;NS=3;NUMALT=1;ODDS=4.33681e-19;PAIRED=1;PAIREDR=0.758621;PAO=0;PQA=0;PQR=0;PRO=0;QA=73;QR=1067;RO=29;RPL=0;RPP=7.35324;RPPR=65.983;RPR=2;RUN=1;SAF=1;SAP=3.0103;SAR=1;SRF=0;SRP=65.983;SRR=29;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:19:19,0:19:716:0:0:0,-5.71957,-56.3503 0/1:3:1,2:1:22:2:73:-6.02821,0,-1.24572 0/0:9:9,0:9:329:0:0:0,-2.70927,-25.7647 dDocent_Contig_6756 21 . T C 1221.98 . 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A T 302.595 . AB=0.387097;ABP=6.44263;AC=2;AF=0.333333;AN=6;AO=12;CIGAR=1X;DP=45;DPB=45;DPRA=1.10714;EPP=29.068;EPPR=74.6689;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=471;QR=1278;RO=33;RPL=0;RPP=29.068;RPPR=74.6689;RPR=12;RUN=1;SAF=12;SAP=29.068;SAR=0;SRF=33;SRP=74.6689;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:20:11,9:11:441:9:360:-26.7432,0,-34.0244 0/0:14:14,0:14:528:0:0:0,-4.21442,-47.8417 0/1:11:8,3:8:309:3:111:-7.03916,0,-24.8563 dDocent_Contig_6759 16 . C T 281.637 . AB=0.27027;ABP=19.9713;AC=2;AF=0.333333;AN=6;AO=10;CIGAR=1X3M1X;DP=53;DPB=53;DPRA=0;EPP=24.725;EPPR=74.6689;GTI=0;LEN=1;MEANALT=1.5;MQM=60;MQMR=59.2727;NS=3;NUMALT=3;ODDS=6.93889e-18;PAIRED=1;PAIREDR=0.939394;PAO=0;PQA=0;PQR=0;PRO=0;QA=392;QR=1304;RO=33;RPL=0;RPP=24.725;RPPR=74.6689;RPR=10;RUN=1;SAF=10;SAP=24.725;SAR=0;SRF=33;SRP=74.6689;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|1:30:19,8,0,3:19:759:8,0,3:313,0,122:-20.0022,0,-60.0415,-25.7218,-62.4497,-88.1803,-15.6544,-52.3854,-78.116,-77.2129 0|1:7:5,2,0,0:5:196:2,0,0:79,0,0:-5.39042,0,-15.9078,-6.89557,-16.5099,-23.0117,-6.89557,-16.5099,-23.0117,-23.0117 0|0:16:9,0,4,3:9:349:0,4,3:0,139,117:-8.28759,-10.9969,-39.682,0,-28.6687,-27.4646,-1.35829,-30.0617,-19.0509,-29.1586 dDocent_Contig_6760 1 . N G 65.5375 . AB=0;ABP=0;AC=2;AF=1;AN=2;AO=2;CIGAR=1X;DP=2;DPB=2;DPRA=0;EPP=7.35324;EPPR=0;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=0;NS=1;NUMALT=1;ODDS=5.99146;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=69;QR=0;RO=0;RPL=0;RPP=7.35324;RPPR=0;RPR=2;RUN=1;SAF=0;SAP=7.35324;SAR=2;SRF=0;SRP=0;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL ./.:.:.:.:.:.:.:. ./.:.:.:.:.:.:.:. 1/1:2:0,2:0:0:2:69:-6.55266,-0.60206,0 dDocent_Contig_6761 26 . G A 618.421 . AB=0.0492958;ABP=253.555;AC=1;AF=0.166667;AN=6;AO=7;CIGAR=1X1M1X;DP=168;DPB=168;DPRA=0;EPP=18.2106;EPPR=283.13;GTI=0;LEN=1;MEANALT=2.5;MQM=60;MQMR=60;NS=3;NUMALT=2;ODDS=0;PAIRED=0.714286;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=285;QR=5035;RO=129;RPL=0;RPP=18.2106;RPPR=283.13;RPR=7;RUN=1;SAF=7;SAP=18.2106;SAR=0;SRF=129;SRP=283.13;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|0:117:90,5,21:90:3509:5,21:203,824:-40.6967,-51.0423,-337.943,0,-271.687,-282.109 0|0:26:17,0,9:17:681:0,9:0,357:-24.6662,-29.7837,-85.8905,0,-56.5043,-53.7951 0|1:25:22,2,1:22:845:2,1:82,41:-0.145501,0,-68.7259,-3.38408,-65.9428,-72.4121 dDocent_Contig_6763 9 . T C 4112.39 . AB=0.0534979;ABP=423.802;AC=3;AF=0.5;AN=6;AO=13;CIGAR=2X3M1X3M1X3M;DP=243;DPB=243;DPRA=0;EPP=31.2394;EPPR=157.185;GTI=0;LEN=1;MEANALT=4.33333;MQM=60;MQMR=60;NS=3;NUMALT=4;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=508;QR=2796;RO=71;RPL=0;RPP=31.2394;RPPR=157.185;RPR=13;RUN=1;SAF=13;SAP=31.2394;SAR=0;SRF=71;SRP=157.185;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|1:145:45,0,84,8,5:45:1782:0,84,8,5:0,3280,319,199:-256.094,-269.64,-416.312,0,-146.679,-121.392,-243.368,-390.04,-120.407,-387.632,-253.253,-399.926,-130.292,-373.654,-398.421 0|1:20:4,0,14,0,1:4:158:0,14,0,1:0,548,0,40:-43.8566,-45.0608,-58.0633,0,-13.0051,-8.79064,-45.0608,-58.0633,-13.0051,-58.0633,-41.7651,-54.7678,-9.70866,-54.7678,-54.4667 0|1:78:22,10,38,0,7:22:856:10,38,0,7:387,1500,0,269:-116.812,-91.6469,-158.979,0,-38.5576,-58.9067,-123.434,-161.99,-70.3459,-193.777,-101.354,-139.909,-48.2655,-171.697,-169.59 dDocent_Contig_6764 66 . T C 605.211 . AB=0.315789;ABP=19.8106;AC=4;AF=0.666667;AN=6;AO=18;CIGAR=1X10M;DP=57;DPB=51.9091;DPRA=0;EPP=42.0968;EPPR=52.9542;GTI=0;LEN=1;MEANALT=2.66667;MQM=60;MQMR=60;NS=3;NUMALT=3;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=727;QR=883;RO=23;RPL=18;RPP=42.0968;RPPR=52.9542;RPR=0;RUN=1;SAF=18;SAP=42.0968;SAR=0;SRF=23;SRP=52.9542;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|1:32:16,3,8,5:16:615:3,8,5:110,323,174:-21.8352,-17.6652,-67.2513,0,-41.5193,-48.0994,-12.5176,-54.0135,-36.3663,-61.4951 0|1:11:6,0,3,2:6:230:0,3,2:0,119,51:-8.07433,-9.88051,-28.7811,0,-18.9731,-18.07,-5.95159,-24.8197,-15.0196,-24.2177 1|1:14:1,5,7,1:1:38:5,7,1:195,285,39:-36.1344,-20.4139,-22.0225,-12.9157,0,-13.9236,-33.2303,-20.3233,-12.8247,-36.0443 dDocent_Contig_6765 23 . C A 6414.46 . AB=0.013245;ABP=313.761;AC=0;AF=0;AN=6;AO=4;CIGAR=12M1X2M1X;DP=235;DPB=236.125;DPRA=0;EPP=11.6962;EPPR=55.1256;GTI=0;LEN=1;MEANALT=3.5;MQM=60;MQMR=60;NS=3;NUMALT=3;ODDS=2.77556e-17;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=150;QR=951;RO=24;RPL=0;RPP=11.6962;RPPR=55.1256;RPR=4;RUN=1;SAF=4;SAP=11.6962;SAR=0;SRF=24;SRP=55.1256;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|0:151:9,2,17,121:9:360:2,17,121:74,674,4857:-423.312,-419.968,-449.022,-370.546,-394.149,-395.084,-25.8206,-49.4278,0,-19.0546 0|0:30:0,2,0,28:0:0:2,0,28:76,0,1115:-100.251,-94.0199,-93.4178,-100.251,-94.0199,-100.251,-8.42884,-1.81664,-8.42884,0 0|0:54:15,0,0,38:15:591:0,0,38:0,0,1528:-121.406,-125.921,-174.541,-125.921,-174.541,-174.541,0,-48.6167,-48.6167,-37.1776 dDocent_Contig_6766 11 . A G 742.566 . AB=0.0185185;ABP=437.948;AC=0;AF=0;AN=6;AO=4;CIGAR=1X2M1X;DP=234;DPB=234;DPRA=0;EPP=11.6962;EPPR=376.504;GTI=0;LEN=1;MEANALT=3.5;MQM=54;MQMR=59.3837;NS=3;NUMALT=3;ODDS=0;PAIRED=1;PAIREDR=0.988372;PAO=0;PQA=0;PQR=0;PRO=0;QA=158;QR=6850;RO=172;RPL=0;RPP=11.6962;RPPR=376.504;RPR=4;RUN=1;SAF=4;SAP=11.6962;SAR=0;SRF=172;SRP=376.504;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|0:162:122,1,8,30:122:4870:1,8,30:39,327,1188:-60.7049,-94.2339,-494.167,-70.444,-467.484,-468.272,0,-397.032,-373.244,-391.197 0|0:18:12,0,1,5:12:484:0,1,5:0,41,172:-10.2035,-13.8159,-53.745,-10.4205,-50.3596,-50.0586,0,-39.8898,-36.5052,-38.3847 0|0:54:38,3,6,7:38:1496:3,6,7:119,243,285:-8.78305,-10.4547,-132.512,-0.171161,-113.376,-121.335,0,-113.178,-102.904,-120.835 dDocent_Contig_6767 10 . C A 104.434 . AB=0;ABP=0;AC=2;AF=0.333333;AN=6;AO=3;CIGAR=1X;DP=15;DPB=15;DPRA=0.5;EPP=9.52472;EPPR=29.068;GTI=0;LEN=1;MEANALT=1;MQM=48;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=111;QR=478;RO=12;RPL=0;RPP=9.52472;RPPR=29.068;RPR=3;RUN=1;SAF=3;SAP=9.52472;SAR=0;SRF=12;SRP=29.068;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:5:5,0:5:202:0:0:0,-1.50515,-18.5619 1/1:3:0,3:0:0:3:111:-10.2671,-0.90309,0 0/0:7:7,0:7:276:0:0:0,-2.10721,-25.2073 dDocent_Contig_6768 27 . G A 398.439 . AB=0.207921;ABP=77.8508;AC=3;AF=0.5;AN=6;AO=21;CIGAR=1X;DP=101;DPB=101;DPRA=0;EPP=48.6112;EPPR=174.557;GTI=0;LEN=1;MEANALT=1.33333;MQM=60;MQMR=59.7848;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=0.974684;PAO=0;PQA=0;PQR=0;PRO=0;QA=827;QR=3135;RO=79;RPL=0;RPP=48.6112;RPPR=174.557;RPR=21;RUN=1;SAF=21;SAP=48.6112;SAR=0;SRF=79;SRP=174.557;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:64:51,12:51:2048:12:488:-24.8974,0,-164.974 0/1:7:6,1:6:244:1:38:-1.69006,0,-20.2316 0/1:30:22,8:22:843:8:301:-18.4037,0,-67.1337 dDocent_Contig_6769 59 . T C 145.912 . AB=0.0769231;ABP=63.6445;AC=0;AF=0;AN=6;AO=3;CIGAR=1X3M1X;DP=56;DPB=56;DPRA=3;EPP=9.52472;EPPR=98.5551;GTI=0;LEN=1;MEANALT=3;MQM=51;MQMR=60;NS=3;NUMALT=2;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=118;QR=1679;RO=44;RPL=3;RPP=9.52472;RPPR=98.5551;RPR=0;RUN=1;SAF=3;SAP=9.52472;SAR=0;SRF=44;SRP=98.5551;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|0:39:30,3,5:30:1134:3,5:118,205:-7.90155,-7.29792,-99.314,0,-83.2922,-91.4274 0|0:4:1,0,3:1:37:0,3:0,122:-10.1684,-10.4694,-13.4873,0,-3.3968,-2.49371 0|0:13:13,0,0:13:508:0,0:0,0:0,-3.91339,-46.0655,-3.91339,-46.0655,-46.0655 dDocent_Contig_6771 30 . C T 220.129 . AB=0.238095;ABP=28.0339;AC=1;AF=0.166667;AN=6;AO=12;CIGAR=1X;DP=77;DPB=77;DPRA=4.3125;EPP=29.068;EPPR=144.156;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=479;QR=2551;RO=65;RPL=0;RPP=29.068;RPPR=144.156;RPR=12;RUN=1;SAF=12;SAP=29.068;SAR=0;SRF=65;SRP=144.156;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:42:32,10:32:1283:10:398:-23.5352,0,-103.094 0/0:8:8,0:8:316:0:0:0,-2.40824,-28.8038 0/0:27:25,2:25:952:2:81:0,-0.442076,-78.285 dDocent_Contig_6774 25 . C T 539.702 . AB=0.344262;ABP=15.8611;AC=2;AF=0.333333;AN=6;AO=22;CIGAR=1X;DP=75;DPB=75;DPRA=0;EPP=50.7827;EPPR=118.098;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=876;QR=2121;RO=53;RPL=0;RPP=50.7827;RPPR=118.098;RPR=22;RUN=1;SAF=22;SAP=50.7827;SAR=0;SRF=53;SRP=118.098;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:52:34,18:34:1358:18:717:-49.1988,0,-106.82 0/1:9:6,3:6:236:3:118:-8.29324,0,-18.8987 0/0:14:13,1:13:527:1:41:0,-0.119853,-43.6822 dDocent_Contig_6775 45 . T C 85.7589 . AB=0.2;ABP=22.5536;AC=2;AF=0.333333;AN=6;AO=5;CIGAR=1X;DP=35;DPB=35;DPRA=1.25;EPP=13.8677;EPPR=68.1545;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=1.73472e-18;PAIRED=0;PAIREDR=0.7;PAO=0;PQA=0;PQR=0;PRO=0;QA=198;QR=1157;RO=30;RPL=0;RPP=13.8677;RPPR=68.1545;RPR=5;RUN=1;SAF=5;SAP=13.8677;SAR=0;SRF=30;SRP=68.1545;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:15:11,4:11:430:4:158:-10.085,0,-34.5392 0/0:10:10,0:10:378:0:0:0,-3.0103,-34.3713 0/1:10:9,1:9:349:1:40:-0.985379,0,-28.7597 dDocent_Contig_6778 17 . C T 80.6068 . AB=0.266667;ABP=10.1038;AC=2;AF=0.333333;AN=6;AO=4;CIGAR=1X;DP=23;DPB=23;DPRA=0.9375;EPP=11.6962;EPPR=44.2683;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=1.73472e-18;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=163;QR=762;RO=19;RPL=0;RPP=11.6962;RPPR=44.2683;RPR=4;RUN=1;SAF=4;SAP=11.6962;SAR=0;SRF=19;SRP=44.2683;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:8:8,0:8:315:0:0:0,-2.40824,-28.7114 0/1:5:2,3:2:82:3:122:-9.86734,0,-6.27453 0/1:10:9,1:9:365:1:41:-1.08427,0,-30.2042 dDocent_Contig_6780 25 . T G 32.564 . AB=0.142857;ABP=34.0313;AC=2;AF=0.333333;AN=6;AO=5;CIGAR=1M1D4M1X2M1X3M;DP=47;DPB=46.6154;DPRA=0;EPP=13.8677;EPPR=92.0407;GTI=0;LEN=1;MEANALT=1.33333;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=200;QR=1630;RO=41;RPL=0;RPP=13.8677;RPPR=92.0407;RPR=5;RUN=1;SAF=5;SAP=13.8677;SAR=0;SRF=41;SRP=92.0407;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|1:24:21,3:21:837:3:120:-3.96318,0,-68.424 0|1:4:3,1:3:121:1:40:-2.79156,0,-10.0761 0|0:19:17,1:17:672:1:40:0,-1.82737,-56.8131 dDocent_Contig_6781 14 . C A 1701.57 . AB=0.320574;ABP=61.453;AC=2;AF=0.333333;AN=6;AO=67;CIGAR=1X;DP=229;DPB=229;DPRA=5.225;EPP=148.499;EPPR=354.789;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=2623;QR=6510;RO=162;RPL=0;RPP=148.499;RPPR=354.789;RPR=67;RUN=1;SAF=67;SAP=148.499;SAR=0;SRF=162;SRP=354.789;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:158:106,52:106:4262:52:2023:-134.693,0,-335.958 0/0:20:20,0:20:803:0:0:0,-6.0206,-72.5849 0/1:51:36,15:36:1445:15:600:-38.9869,0,-114.948 dDocent_Contig_6782 123 . T A 296.974 . AB=0.388889;ABP=6.8707;AC=2;AF=0.5;AN=4;AO=14;CIGAR=1X;DP=36;DPB=36;DPRA=0;EPP=33.4109;EPPR=50.7827;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=2;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=484;QR=759;RO=22;RPL=0;RPP=33.4109;RPPR=50.7827;RPR=14;RUN=1;SAF=0;SAP=33.4109;SAR=14;SRF=0;SRP=50.7827;SRR=22;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:23:14,9:14:482:9:313:-21.5833,0,-36.7849 ./.:.:.:.:.:.:.:. 0/1:13:8,5:8:277:5:171:-11.8131,0,-21.3536 dDocent_Contig_6783 34 . A C 103.027 . AB=0.127907;ABP=106.433;AC=3;AF=0.5;AN=6;AO=11;CIGAR=2X1M;DP=86;DPB=86;DPRA=0;EPP=26.8965;EPPR=159.356;GTI=0;LEN=1;MEANALT=1.66667;MQM=60;MQMR=60;NS=3;NUMALT=2;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=438;QR=2857;RO=72;RPL=0;RPP=26.8965;RPPR=159.356;RPR=11;RUN=1;SAF=11;SAP=26.8965;SAR=0;SRF=72;SRP=159.356;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|1:57:52,0,5:52:2084:0,5:0,202:-1.40337,-17.0569,-188.746,0,-172.092,-170.587 0|1:16:13,0,3:13:494:0,3:0,122:-6.55601,-10.4694,-50.9475,0,-40.8793,-39.9762 0|1:13:7,2,3:7:279:2,3:76,114:-7.23429,-3.11106,-25.492,0,-16.753,-22.0788 dDocent_Contig_6784 19 . A G 3487.59 . AB=0.284153;ABP=77.0658;AC=3;AF=0.5;AN=6;AO=52;CIGAR=3M2I3M1X;DP=183;DPB=224.714;DPRA=0;EPP=115.927;EPPR=68.1545;GTI=0;LEN=1;MEANALT=3.33333;MQM=60;MQMR=60;NS=3;NUMALT=3;ODDS=2.77556e-17;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=2067;QR=1189;RO=30;RPL=0;RPP=115.927;RPPR=68.1545;RPR=52;RUN=1;SAF=52;SAP=115.927;SAR=0;SRF=30;SRP=68.1545;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|1:101:14,0,54,28:14:562:0,54,28:0,2118,1114:-215.37,-219.584,-265.894,-45.4123,-91.7223,-75.4667,-127.86,-174.17,0,-165.741 0|1:14:3,0,8,3:3:118:0,8,3:0,317,120:-25.3708,-26.2739,-35.9795,-0.184803,-9.88797,-7.47973,-16.3882,-26.0939,0,-25.1908 0|1:68:13,4,28,21:13:509:4,28,21:161,1102,833:-113.456,-104.099,-144.746,-26.721,-55.3,-60.1412,-48.7995,-77.3795,0,-84.328 dDocent_Contig_6785 40 . C T 252.735 . AB=0.282051;ABP=19.1015;AC=2;AF=0.333333;AN=6;AO=11;CIGAR=2X;DP=64;DPB=64;DPRA=0.78;EPP=26.8965;EPPR=118.098;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=442;QR=2090;RO=53;RPL=0;RPP=26.8965;RPPR=118.098;RPR=11;RUN=1;SAF=11;SAP=26.8965;SAR=0;SRF=53;SRP=118.098;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|1:28:19,9:19:737:9:362:-24.5153,0,-58.2214 0|0:25:25,0:25:994:0:0:0,-7.52575,-89.7564 0|1:11:9,2:9:359:2:80:-4.28025,0,-29.3606 dDocent_Contig_6786 14 . C A 5235.91 . AB=0.9;ABP=211.472;AC=4;AF=0.666667;AN=6;AO=159;CIGAR=1X;DP=174;DPB=174;DPRA=0;EPP=348.274;EPPR=35.5824;GTI=0;LEN=1;MEANALT=1;MQM=59.9245;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=6347;QR=607;RO=15;RPL=0;RPP=348.274;RPPR=35.5824;RPR=159;RUN=1;SAF=159;SAP=348.274;SAR=0;SRF=15;SRP=35.5824;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:93:8,85:8:324:85:3381:-276.343,0,-1.53303 1/1:24:0,24:0:0:24:953:-86.0647,-7.22472,0 0/1:57:7,50:7:283:50:2013:-164.192,0,-8.68429 dDocent_Contig_6787 11 . A G 407.98 . AB=0.441176;ABP=4.03217;AC=2;AF=0.333333;AN=6;AO=20;CIGAR=1X;DP=114;DPB=114;DPRA=0;EPP=46.4397;EPPR=207.129;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=800;QR=3778;RO=94;RPL=0;RPP=46.4397;RPPR=207.129;RPR=20;RUN=1;SAF=20;SAP=46.4397;SAR=0;SRF=94;SRP=207.129;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:80:75,5:75:3013:5:202:0,-5.52032,-252.693 0/1:11:6,5:6:239:5:201:-15.1592,0,-18.5735 0/1:23:13,10:13:526:10:397:-29.1617,0,-40.7631 dDocent_Contig_6788 15 . G A 1612.28 . AB=0.15625;ABP=35.8538;AC=4;AF=0.666667;AN=6;AO=5;CIGAR=1X3M1X2M1X1M1X;DP=91;DPB=91;DPRA=0;EPP=13.8677;EPPR=65.983;GTI=0;LEN=1;MEANALT=2;MQM=60;MQMR=60;NS=3;NUMALT=2;ODDS=0;PAIRED=1;PAIREDR=0.931034;PAO=0;PQA=0;PQR=0;PRO=0;QA=195;QR=1126;RO=29;RPL=0;RPP=13.8677;RPPR=65.983;RPR=5;RUN=1;SAF=5;SAP=13.8677;SAR=0;SRF=29;SRP=65.983;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|1:59:16,41,0:16:631:41,0:1573,0:-124.384,0,-39.6791,-129.2,-52.0213,-181.12 1|1:5:1,3,1:1:38:3,1:117,40:-9.50741,-0.19841,-2.40191,-6.51088,0,-9.32388 0|1:27:12,11,4:12:457:11,4:441,155:-32.7317,0,-34.1686,-23.6136,-24.7443,-59.884 dDocent_Contig_6789 98 . N T 90.5132 . AB=0;ABP=0;AC=2;AF=1;AN=2;AO=3;CIGAR=1M1I14M3X;DP=3;DPB=5.33333;DPRA=0;EPP=9.52472;EPPR=0;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=0;NS=1;NUMALT=1;ODDS=6.68461;PAIRED=1;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=97;QR=0;RO=0;RPL=3;RPP=9.52472;RPPR=0;RPR=0;RUN=1;SAF=3;SAP=9.52472;SAR=0;SRF=0;SRP=0;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 1|1:3:0,3:0:0:3:97:-9.05078,-0.90309,0 .:.:.:.:.:.:.:. .:.:.:.:.:.:.:. dDocent_Contig_6790 72 . T A 31.718 . AB=0.25;ABP=7.35324;AC=1;AF=0.166667;AN=6;AO=2;CIGAR=1X;DP=20;DPB=20;DPRA=1.33333;EPP=7.35324;EPPR=42.0968;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=78;QR=636;RO=18;RPL=2;RPP=7.35324;RPPR=42.0968;RPR=0;RUN=1;SAF=2;SAP=7.35324;SAR=0;SRF=18;SRP=42.0968;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:9:9,0:9:321:0:0:0,-2.70927,-29.2309 0/0:3:3,0:3:99:0:0:0,-0.90309,-9.2367 0/1:8:6,2:6:216:2:78:-4.99523,0,-17.3791 dDocent_Contig_6791 7 . T C 3210.73 . AB=0.0373333;ABP=700.25;AC=0;AF=0;AN=6;AO=14;CIGAR=2X2M1X;DP=375;DPB=375;DPRA=0;EPP=33.4109;EPPR=233.265;GTI=0;LEN=1;MEANALT=5;MQM=32.0714;MQMR=56.9273;NS=3;NUMALT=3;ODDS=0;PAIRED=0;PAIREDR=0.136364;PAO=0;PQA=0;PQR=0;PRO=0;QA=528;QR=4209;RO=110;RPL=0;RPP=33.4109;RPPR=241.872;RPR=14;RUN=1;SAF=14;SAP=33.4109;SAR=0;SRF=109;SRP=233.265;SRR=1;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|0:221:52,5,6,152:52:1999:5,6,152:183,198,6085:-227.495,-229.768,-384.172,-228.757,-371.287,-382.859,0,-142.526,-141.518,-110.145 0|0:58:18,3,0,32:18:693:3,0,32:117,0,1287:-41.4396,-43.0016,-97.9562,-46.8581,-98.8593,-102.713,0,-52.0764,-55.9152,-46.2822 0|0:96:40,6,6,42:40:1517:6,6,42:228,199,1657:-57.6616,-53.2395,-175.74,-55.2169,-163.067,-177.716,0,-107.837,-109.815,-111.643 dDocent_Contig_6794 86 . T C 35.4986 . AB=0.2;ABP=14.7363;AC=1;AF=0.166667;AN=6;AO=3;CIGAR=1X;DP=56;DPB=56;DPRA=0.731707;EPP=9.52472;EPPR=118.098;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=106;QR=1811;RO=53;RPL=3;RPP=9.52472;RPPR=118.098;RPR=0;RUN=1;SAF=3;SAP=9.52472;SAR=0;SRF=53;SRP=118.098;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:32:32,0:32:1101:0:0:0,-9.63296,-99.3924 0/1:15:12,3:12:422:3:106:-5.37365,0,-33.8002 0/0:9:9,0:9:288:0:0:0,-2.70927,-26.2315 dDocent_Contig_6795 44 . C G 110.887 . AB=0.138889;ABP=84.5612;AC=2;AF=0.333333;AN=6;AO=10;CIGAR=1X;DP=83;DPB=83;DPRA=3.27273;EPP=24.725;EPPR=159.356;GTI=0;LEN=1;MEANALT=1.5;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=396;QR=2846;RO=72;RPL=0;RPP=24.725;RPPR=159.356;RPR=10;RUN=1;SAF=10;SAP=24.725;SAR=0;SRF=72;SRP=159.356;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:41:34,6:34:1336:6:245:-9.98753,0,-108.06 0/0:11:11,0:11:439:0:0:0,-3.31133,-39.8652 0/1:31:27,4:27:1071:4:151:-4.62374,0,-87.3449 dDocent_Contig_6796 107 . N T 66.4848 . AB=0;ABP=0;AC=2;AF=1;AN=2;AO=2;CIGAR=1X;DP=2;DPB=2;DPRA=0;EPP=7.35324;EPPR=0;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=0;NS=1;NUMALT=1;ODDS=5.99146;PAIRED=1;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=70;QR=0;RO=0;RPL=0;RPP=7.35324;RPPR=0;RPR=2;RUN=1;SAF=0;SAP=7.35324;SAR=2;SRF=0;SRP=0;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL ./.:.:.:.:.:.:.:. 1/1:2:0,2:0:0:2:70:-6.6474,-0.60206,0 ./.:.:.:.:.:.:.:. dDocent_Contig_6797 32 . A G 422.55 . AB=0.3;ABP=23.8564;AC=3;AF=0.5;AN=6;AO=18;CIGAR=1X3M1X;DP=60;DPB=60;DPRA=0;EPP=42.0968;EPPR=94.2121;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=719;QR=1571;RO=42;RPL=0;RPP=42.0968;RPPR=94.2121;RPR=18;RUN=1;SAF=18;SAP=42.0968;SAR=0;SRF=42;SRP=94.2121;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|1:37:26,11:26:986:11:438:-28.6376,0,-77.9083 0|1:12:8,4:8:305:4:160:-11.1717,0,-24.1955 0|1:11:8,3:8:280:3:121:-7.96866,0,-22.2208 dDocent_Contig_6798 23 . A C 60.9952 . AB=0.12963;ABP=67.3502;AC=2;AF=0.333333;AN=6;AO=8;CIGAR=1X;DP=119;DPB=119;DPRA=0;EPP=20.3821;EPPR=244.044;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=309;QR=4315;RO=111;RPL=0;RPP=20.3821;RPPR=244.044;RPR=8;RUN=1;SAF=8;SAP=20.3821;SAR=0;SRF=111;SRP=244.044;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:65:64,1:64:2476:1:39:0,-15.6704,-219.121 0/1:10:9,1:9:350:1:39:-0.886264,0,-28.8477 0/1:44:38,6:38:1489:6:231:-7.91242,0,-121.027 dDocent_Contig_6799 27 . T G 47.5167 . AB=0.5;ABP=3.0103;AC=1;AF=0.166667;AN=6;AO=4;CIGAR=1X;DP=158;DPB=158;DPRA=0.158333;EPP=11.6962;EPPR=337.417;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=1.73472e-18;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=164;QR=6166;RO=154;RPL=0;RPP=11.6962;RPPR=337.417;RPR=4;RUN=1;SAF=4;SAP=11.6962;SAR=0;SRF=154;SRP=337.417;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:120:120,0:120:4802:0:0:0,-36.1236,-432.058 0/1:4:2,2:2:81:2:82:-6.57556,0,-6.48161 0/0:34:32,2:32:1283:2:82:0,-2.45534,-107.956 dDocent_Contig_6800 95 . G T 30.299 . AB=0.119048;ABP=108.895;AC=2;AF=0.333333;AN=6;AO=10;CIGAR=1X;DP=90;DPB=90;DPRA=7;EPP=24.725;EPPR=176.728;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=346;QR=2554;RO=80;RPL=10;RPP=24.725;RPPR=176.728;RPR=0;RUN=1;SAF=10;SAP=24.725;SAR=0;SRF=80;SRP=176.728;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:72:64,8:64:2046:8:278:-3.6838,0,-162.731 0/0:6:6,0:6:185:0:0:0,-1.80618,-16.9536 0/1:12:10,2:10:323:2:68:-2.84552,0,-25.7706 dDocent_Contig_6801 168 . C T 1068.81 . AB=0.463415;ABP=3.96363;AC=2;AF=0.333333;AN=6;AO=38;CIGAR=1X;DP=83;DPB=83;DPRA=41;EPP=85.5263;EPPR=100.727;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=1494;QR=1773;RO=45;RPL=38;RPP=85.5263;RPPR=100.727;RPR=0;RUN=1;SAF=0;SAP=85.5263;SAR=38;SRF=0;SRP=100.727;SRR=45;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:48:23,25:23:900:25:1002:-76.0264,0,-66.8488 0/0:1:1,0:1:39:0:0:0,-0.30103,-3.89656 0/1:34:21,13:21:834:13:492:-34.3771,0,-65.1348 dDocent_Contig_6802 35 . T A 127.848 . AB=0.160714;ABP=59.0033;AC=2;AF=0.333333;AN=6;AO=9;CIGAR=1X;DP=59;DPB=59;DPRA=9.33333;EPP=22.5536;EPPR=111.584;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=3.46945e-18;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=360;QR=2000;RO=50;RPL=0;RPP=22.5536;RPPR=111.584;RPR=9;RUN=1;SAF=9;SAP=22.5536;SAR=0;SRF=50;SRP=111.584;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:46:40,6:40:1593:6:238:-7.94528,0,-129.75 0/0:3:3,0:3:122:0:0:0,-0.90309,-11.3725 0/1:10:7,3:7:285:3:122:-8.36219,0,-23.0141 dDocent_Contig_6803 95 . T C 533.606 . AB=0.534884;ABP=3.46479;AC=3;AF=0.5;AN=6;AO=23;CIGAR=1X;DP=43;DPB=43;DPRA=0;EPP=52.9542;EPPR=46.4397;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=0.95;PAO=0;PQA=0;PQR=0;PRO=0;QA=787;QR=680;RO=20;RPL=23;RPP=52.9542;RPPR=46.4397;RPR=0;RUN=1;SAF=23;SAP=52.9542;SAR=0;SRF=20;SRP=46.4397;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:25:11,14:11:369:14:480:-36.0008,0,-26.0075 0/1:7:2,5:2:70:5:174:-13.8947,0,-4.54019 0/1:11:7,4:7:241:4:133:-8.98749,0,-18.7151 dDocent_Contig_6804 127 . G A 54.5502 . AB=0.212121;ABP=26.7649;AC=1;AF=0.166667;AN=6;AO=7;CIGAR=1X;DP=43;DPB=43;DPRA=6.6;EPP=18.2106;EPPR=81.1833;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=185;QR=1217;RO=36;RPL=0;RPP=18.2106;RPPR=81.1833;RPR=7;RUN=1;SAF=0;SAP=18.2106;SAR=7;SRF=0;SRP=81.1833;SRR=36;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:33:26,7:26:869:7:185:-6.97778,0,-68.5826 0/0:4:4,0:4:138:0:0:0,-1.20412,-12.7604 0/0:6:6,0:6:210:0:0:0,-1.80618,-19.2425 dDocent_Contig_6806 53 . T G 117.347 . AB=0.107843;ABP=139.26;AC=2;AF=0.333333;AN=6;AO=11;CIGAR=2X1M1X;DP=102;DPB=102;DPRA=0;EPP=26.8965;EPPR=187.585;GTI=0;LEN=1;MEANALT=2;MQM=60;MQMR=60;NS=3;NUMALT=2;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=401;QR=3159;RO=85;RPL=11;RPP=26.8965;RPPR=187.585;RPR=0;RUN=1;SAF=11;SAP=26.8965;SAR=0;SRF=85;SRP=187.585;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|1:80:72,0,8:72:2686:0,8:0,294:-2.72946,-24.4036,-244.294,0,-220.258,-217.85 0|1:11:7,1,2:7:268:1,2:39,70:-3.64821,-2.51627,-24.2969,0,-18.9013,-21.5102 0|0:11:6,4,1:6:205:4,1:154,37:-10.8502,0,-15.4047,-9.63237,-13.5777,-25.9385 dDocent_Contig_6807 116 . T C 45.2815 . AB=0.333333;ABP=5.18177;AC=1;AF=0.25;AN=4;AO=3;CIGAR=1X;DP=19;DPB=19;DPRA=0.9;EPP=9.52472;EPPR=37.7539;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=58.1875;NS=2;NUMALT=1;ODDS=0;PAIRED=0;PAIREDR=0.9375;PAO=0;PQA=0;PQR=0;PRO=0;QA=99;QR=510;RO=16;RPL=0;RPP=9.52472;RPPR=37.7539;RPR=3;RUN=1;SAF=0;SAP=9.52472;SAR=3;SRF=0;SRP=37.7539;SRR=16;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:10:10,0:10:301:0:0:0,-3.0103,-27.3819 ./.:.:.:.:.:.:.:. 0/1:9:6,3:6:209:3:99:-6.52813,0,-15.9431 dDocent_Contig_6808 12 . G A 2061.82 . AB=0.339286;ABP=53.2644;AC=2;AF=0.333333;AN=6;AO=77;CIGAR=1X;DP=248;DPB=248;DPRA=0;EPP=170.214;EPPR=374.332;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=3114;QR=6886;RO=171;RPL=0;RPP=170.214;RPPR=374.332;RPR=77;RUN=1;SAF=77;SAP=170.214;SAR=0;SRF=171;SRP=374.332;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:157:90,67:90:3636:67:2706:-196.388,0,-279.988 0/0:24:23,1:23:925:1:40:0,-3.22904,-79.5566 0/1:67:58,9:58:2325:9:368:-13.3163,0,-189.227 dDocent_Contig_6809 33 . C T 1364.47 . AB=0.652174;ABP=16.8888;AC=3;AF=0.5;AN=6;AO=45;CIGAR=1X;DP=69;DPB=69;DPRA=0;EPP=100.727;EPPR=55.1256;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=1797;QR=935;RO=24;RPL=0;RPP=100.727;RPPR=55.1256;RPR=45;RUN=1;SAF=45;SAP=100.727;SAR=0;SRF=24;SRP=55.1256;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:45:15,30:15:605:30:1193:-94.0949,0,-41.2421 0/1:6:2,4:2:78:4:160:-12.9772,0,-5.59712 0/1:18:7,11:7:252:11:444:-34.8973,0,-17.6033 dDocent_Contig_6810 13 . C G 82.1814 . AB=0.178571;ABP=28.1373;AC=1;AF=0.166667;AN=6;AO=7;CIGAR=1X;DP=119;DPB=119;DPRA=2.08696;EPP=18.2106;EPPR=246.215;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=281;QR=4504;RO=112;RPL=0;RPP=18.2106;RPPR=246.215;RPR=7;RUN=1;SAF=7;SAP=18.2106;SAR=0;SRF=112;SRP=246.215;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:68:66,2:66:2678:2:80:0,-12.8782,-233.533 0/0:23:23,0:23:914:0:0:0,-6.92369,-82.5633 0/1:28:23,5:23:912:5:201:-10.0421,0,-73.9523 dDocent_Contig_6811 14 . T A 1415.8 . AB=0.084507;ABP=109.474;AC=2;AF=0.333333;AN=6;AO=7;CIGAR=1X2M2X1M1X;DP=73;DPB=73;DPRA=0;EPP=18.2106;EPPR=39.9253;GTI=0;LEN=1;MEANALT=2.33333;MQM=13.8571;MQMR=60;NS=3;NUMALT=3;ODDS=0;PAIRED=0;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=277;QR=665;RO=17;RPL=0;RPP=18.2106;RPPR=39.9253;RPR=7;RUN=1;SAF=7;SAP=18.2106;SAR=0;SRF=17;SRP=39.9253;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|0:42:9,2,3,28:9:346:2,3,28:78,120,1116:-89.254,-88.6315,-116.429,-82.0768,-107.145,-109.576,0,-25.1202,-18.5437,-20.0099 1|1:2:0,1,0,0:0:0:1,0,0:41,0,0:-1.88509,-0.30103,0,-1.88509,-0.30103,-1.88509,-1.88509,-0.30103,-1.88509,-1.88509 0|0:29:8,4,0,17:8:319:4,0,17:158,0,681:-53.9562,-54.8412,-79.9076,-56.3645,-81.1117,-82.652,0,-25.0072,-26.485,-21.3675 dDocent_Contig_6812 94 . C A 52.5607 . AB=0.137255;ABP=61.2994;AC=1;AF=0.166667;AN=6;AO=7;CIGAR=1X;DP=76;DPB=76;DPRA=4.08;EPP=18.2106;EPPR=150.67;GTI=0;LEN=1;MEANALT=2;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=240;QR=2364;RO=68;RPL=7;RPP=18.2106;RPPR=150.67;RPR=0;RUN=1;SAF=7;SAP=18.2106;SAR=0;SRF=68;SRP=150.67;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:51:43,7:43:1475:7:240:-6.77886,0,-117.909 0/0:4:4,0:4:143:0:0:0,-1.20412,-13.2214 0/0:21:21,0:21:746:0:0:0,-6.32163,-67.4657 dDocent_Contig_6814 92 . C T 71.0192 . AB=0.133333;ABP=90.593;AC=1;AF=0.166667;AN=6;AO=10;CIGAR=1X;DP=117;DPB=117;DPRA=3.57143;EPP=24.725;EPPR=235.358;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=0.990654;PAO=0;PQA=0;PQR=0;PRO=0;QA=343;QR=3688;RO=107;RPL=10;RPP=24.725;RPPR=235.358;RPR=0;RUN=1;SAF=10;SAP=24.725;SAR=0;SRF=107;SRP=235.358;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:75:65,10:65:2237:10:343:-8.6248,0,-179.025 0/0:15:15,0:15:523:0:0:0,-4.51545,-47.4005 0/0:27:27,0:27:928:0:0:0,-8.12781,-83.8329 dDocent_Contig_6815 29 . G A 53.2267 . AB=0.114754;ABP=81.6461;AC=1;AF=0.166667;AN=6;AO=9;CIGAR=1X;DP=109;DPB=109;DPRA=0;EPP=22.5536;EPPR=220.158;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=341;QR=4002;RO=100;RPL=0;RPP=22.5536;RPPR=220.158;RPR=9;RUN=1;SAF=9;SAP=22.5536;SAR=0;SRF=100;SRP=220.158;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:61:54,7:54:2164:7:276:-6.84528,0,-176.573 0/0:16:15,1:15:600:1:41:0,-0.721913,-50.2435 0/0:32:31,1:31:1238:1:24:0,-7.23307,-109.29 dDocent_Contig_6816 78 . T C 66.7823 . AB=0.375;ABP=4.09604;AC=1;AF=0.166667;AN=6;AO=3;CIGAR=1X;DP=43;DPB=43;DPRA=0.457143;EPP=9.52472;EPPR=89.8692;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=0.9;PAO=0;PQA=0;PQR=0;PRO=0;QA=117;QR=1472;RO=40;RPL=3;RPP=9.52472;RPPR=89.8692;RPR=0;RUN=1;SAF=3;SAP=9.52472;SAR=0;SRF=40;SRP=89.8692;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:16:16,0:16:601:0:0:0,-4.81648,-54.4269 0/1:8:5,3:5:181:3:117:-8.50214,0,-14.2346 0/0:19:19,0:19:690:0:0:0,-5.71957,-62.4305 dDocent_Contig_6818 98 . N A 260.846 . AB=0;ABP=0;AC=2;AF=1;AN=2;AO=8;CIGAR=1X;DP=8;DPB=8;DPRA=0;EPP=20.3821;EPPR=0;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=0;NS=1;NUMALT=1;ODDS=10.1503;PAIRED=1;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=286;QR=0;RO=0;RPL=8;RPP=20.3821;RPPR=0;RPR=0;RUN=1;SAF=8;SAP=20.3821;SAR=0;SRF=0;SRP=0;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 1/1:8:0,8:0:0:8:286:-26.0846,-2.40824,0 ./.:.:.:.:.:.:.:. ./.:.:.:.:.:.:.:. dDocent_Contig_6819 8 . T A 5292.33 . AB=0.152393;ABP=2502.97;AC=3;AF=0.5;AN=6;AO=363;CIGAR=1X;DP=2382;DPB=2382;DPRA=0;EPP=791.255;EPPR=4382.87;GTI=0;LEN=1;MEANALT=1.66667;MQM=59.3416;MQMR=59.1824;NS=3;NUMALT=1;ODDS=1.11022e-16;PAIRED=0.955923;PAIREDR=0.98116;PAO=0;PQA=0;PQR=0;PRO=0;QA=13910;QR=77533;RO=2017;RPL=0;RPP=791.255;RPPR=4382.87;RPR=363;RUN=1;SAF=363;SAP=791.255;SAR=0;SRF=2017;SRP=4382.87;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:1452:1257,195:1257:48345:195:7492:-236.643,0,-3896.62 0/1:341:287,54:287:11016:54:2081:-84.8427,0,-887.19 0/1:589:473,114:473:18172:114:4337:-213.271,0,-1454.13 dDocent_Contig_6822 39 . G A 524.373 . AB=0.475;ABP=3.22745;AC=3;AF=0.5;AN=6;AO=19;CIGAR=1X;DP=40;DPB=40;DPRA=0;EPP=44.2683;EPPR=48.6112;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=765;QR=841;RO=21;RPL=0;RPP=44.2683;RPPR=48.6112;RPR=19;RUN=1;SAF=19;SAP=44.2683;SAR=0;SRF=21;SRP=48.6112;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:23:8,15:8:320:15:602:-47.5944,0,-22.2436 0/1:4:3,1:3:122:1:40:-2.79156,0,-10.1684 0/1:13:10,3:10:399:3:123:-7.5514,0,-32.3516 dDocent_Contig_6823 19 . A C 114.444 . AB=0.277778;ABP=10.7311;AC=1;AF=0.25;AN=4;AO=5;CIGAR=1X;DP=31;DPB=31;DPRA=1.38462;EPP=13.8677;EPPR=59.4686;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=2;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=202;QR=1032;RO=26;RPL=0;RPP=13.8677;RPPR=59.4686;RPR=5;RUN=1;SAF=5;SAP=13.8677;SAR=0;SRF=26;SRP=59.4686;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:18:13,5:13:525:5:202:-13.1433,0,-42.1785 ./.:.:.:.:.:.:.:. 0/0:13:13,0:13:507:0:0:0,-3.91339,-45.9688 dDocent_Contig_6824 56 . C G 111.678 . AB=0.5;ABP=3.0103;AC=1;AF=0.166667;AN=6;AO=5;CIGAR=1X;DP=33;DPB=33;DPRA=0.869565;EPP=13.8677;EPPR=63.8115;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=174;QR=937;RO=28;RPL=5;RPP=13.8677;RPPR=63.8115;RPR=0;RUN=1;SAF=5;SAP=13.8677;SAR=0;SRF=28;SRP=63.8115;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:17:17,0:17:558:0:0:0,-5.11751,-50.5309 0/1:10:5,5:5:171:5:174:-12.9917,0,-12.7163 0/0:6:6,0:6:208:0:0:0,-1.80618,-19.0596 dDocent_Contig_6825 7 . T C 318.104 . AB=0.307692;ABP=11.3621;AC=4;AF=0.666667;AN=6;AO=12;CIGAR=1X;DP=30;DPB=30;DPRA=0;EPP=29.068;EPPR=42.0968;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=467;QR=699;RO=18;RPL=0;RPP=29.068;RPPR=42.0968;RPR=12;RUN=1;SAF=12;SAP=29.068;SAR=0;SRF=18;SRP=42.0968;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:16:11,5:11:427:5:195:-13.1077,0,-33.9686 1/1:4:0,4:0:0:4:155:-14.3254,-1.20412,0 0/1:10:7,3:7:272:3:117:-7.90008,0,-21.8369 dDocent_Contig_6826 18 . T C 78.885 . AB=0.0547945;ABP=128.688;AC=0;AF=0;AN=6;AO=4;CIGAR=1X3M1X2M1X;DP=193;DPB=193;DPRA=1.21667;EPP=11.6962;EPPR=354.789;GTI=0;LEN=1;MEANALT=6;MQM=51;MQMR=60;NS=3;NUMALT=2;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=161;QR=6362;RO=162;RPL=0;RPP=11.6962;RPPR=354.789;RPR=4;RUN=1;SAF=4;SAP=11.6962;SAR=0;SRF=162;SRP=354.789;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|0:110:97,0,4:97:3804:0,4:0,155:0,-29.1999,-342.037,-16.4618,-329.304,-328.1 0|0:10:10,0,0:10:397:0,0:0,0:0,-3.0103,-36.089,-3.0103,-36.089,-36.089 0|0:73:55,4,8:55:2161:4,8:161,319:-9.7124,-13.1103,-189.637,0,-164.571,-175.322 dDocent_Contig_6828 9 . T C 2539.16 . AB=0.0443686;ABP=531.345;AC=0;AF=0;AN=6;AO=13;CIGAR=1M1D1M1X2M;DP=341;DPB=284.167;DPRA=0;EPP=31.2394;EPPR=135.47;GTI=0;LEN=1;MEANALT=7;MQM=32.6923;MQMR=59.6721;NS=3;NUMALT=5;ODDS=1.11022e-16;PAIRED=1;PAIREDR=0.0163934;PAO=0;PQA=0;PQR=0;PRO=0;QA=403;QR=2332;RO=61;RPL=0;RPP=31.2394;RPPR=135.47;RPR=13;RUN=1;SAF=13;SAP=31.2394;SAR=0;SRF=61;SRP=135.47;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|0:207:34,11,52,45,41,11:34:1299:11,52,45,41,11:326,1394,1572,1512,425:-121.738,-108.189,-211.286,-33.2208,-115.847,-123.975,-10.807,-93.438,-18.4752,-103.675,-14.7503,-97.3814,-22.4162,0,-108.823,-97.0598,-179.686,-104.718,-82.3087,-86.2522,-200.158 0|0:48:6,0,12,22,8,0:6:225:0,12,22,8,0:0,391,772,290,0:-69.7459,-71.5521,-89.9871,-42.4722,-60.9071,-57.2948,-10.623,-29.065,0,-22.4423,-48.8109,-67.2476,-38.1698,-6.32101,-64.8394,-71.5521,-89.9871,-60.9071,-29.065,-67.2476,-89.9871 0|0:86:21,2,13,20,26,3:21:808:2,13,20,26,3:77,429,667,961,117:-67.9548,-68.3672,-134.118,-42.1592,-102.603,-104.598,-23.0125,-83.458,-57.2543,-83.3459,0,-60.453,-34.2482,-15.1039,-58.5352,-64.656,-125.101,-98.8926,-79.7471,-56.7418,-130.106 dDocent_Contig_6829 20 . T A 82.8507 . AB=0.159091;ABP=47.4268;AC=2;AF=0.333333;AN=6;AO=9;CIGAR=1X;DP=97;DPB=97;DPRA=0;EPP=22.5536;EPPR=194.1;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=59.9659;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=352;QR=3545;RO=88;RPL=0;RPP=22.5536;RPPR=194.1;RPR=9;RUN=1;SAF=9;SAP=22.5536;SAR=0;SRF=88;SRP=194.1;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:53:51,2:51:2059:2:82:0,-8.17491,-177.707 0/1:8:5,3:5:200:3:116:-8.40804,0,-15.9717 0/1:36:32,4:32:1286:4:154:-3.3941,0,-105.163 dDocent_Contig_6831 66 . G C 2004.6 . AB=0.448052;ABP=6.62002;AC=2;AF=0.333333;AN=6;AO=69;CIGAR=1X;DP=161;DPB=161;DPRA=11;EPP=152.842;EPPR=194.194;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=0.98913;PAO=0;PQA=0;PQR=0;PRO=0;QA=2776;QR=3600;RO=92;RPL=69;RPP=152.842;RPPR=202.786;RPR=0;RUN=1;SAF=69;SAP=152.842;SAR=0;SRF=91;SRP=194.194;SRR=1;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:117:61,56:61:2396:56:2258:-168.155,0,-180.579 0/0:7:7,0:7:274:0:0:0,-2.10721,-25.0251 0/1:37:24,13:24:930:13:518:-35.8275,0,-72.8538 dDocent_Contig_6832 96 . T C 163.412 . AB=0.28125;ABP=16.3106;AC=2;AF=0.333333;AN=6;AO=9;CIGAR=1X;DP=39;DPB=39;DPRA=2.28571;EPP=22.5536;EPPR=68.1545;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=320;QR=1050;RO=30;RPL=9;RPP=22.5536;RPPR=68.1545;RPR=0;RUN=1;SAF=9;SAP=22.5536;SAR=0;SRF=30;SRP=68.1545;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:22:18,4:18:627:4:140:-6.32227,0,-50.1341 0/1:10:5,5:5:177:5:180:-13.5418,0,-13.2667 0/0:7:7,0:7:246:0:0:0,-2.10721,-22.4822 dDocent_Contig_6833 88 . A G 70.4815 . AB=0.2;ABP=26.4622;AC=2;AF=0.333333;AN=6;AO=6;CIGAR=1X;DP=39;DPB=39;DPRA=1.66667;EPP=16.0391;EPPR=74.6689;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=210;QR=1144;RO=33;RPL=6;RPP=16.0391;RPPR=74.6689;RPR=0;RUN=1;SAF=6;SAP=16.0391;SAR=0;SRF=33;SRP=74.6689;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:22:19,3:19:657:3:105:-3.1735,0,-52.8314 0/1:8:5,3:5:173:3:105:-7.38792,0,-13.502 0/0:9:9,0:9:314:0:0:0,-2.70927,-28.5979 dDocent_Contig_6836 146 . T C 115.367 . AB=0.285714;ABP=8.59409;AC=4;AF=0.666667;AN=6;AO=5;CIGAR=1X;DP=15;DPB=15;DPRA=0;EPP=13.8677;EPPR=24.725;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=201;QR=398;RO=10;RPL=0;RPP=13.8677;RPPR=24.725;RPR=5;RUN=1;SAF=0;SAP=13.8677;SAR=5;SRF=0;SRP=24.725;SRR=10;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:7:5,2:5:197:2:81:-5.57852,0,-15.9988 1/1:1:0,1:0:0:1:40:-3.99568,-0.30103,0 0/1:7:5,2:5:201:2:80:-5.48458,0,-16.3633 dDocent_Contig_6837 7 . T A 7561.65 . AB=0.0364583;ABP=719.687;AC=4;AF=0.666667;AN=6;AO=14;CIGAR=3X6M;DP=384;DPB=385.667;DPRA=0;EPP=33.4109;EPPR=46.4397;GTI=0;LEN=1;MEANALT=10.6667;MQM=60;MQMR=60;NS=3;NUMALT=6;ODDS=1.11022e-16;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=514;QR=762;RO=20;RPL=0;RPP=33.4109;RPPR=46.4397;RPR=14;RUN=1;SAF=14;SAP=33.4109;SAR=0;SRF=20;SRP=46.4397;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 1|1:203:9,12,13,13,121,12,6:9:345:12,13,13,121,12,6:476,496,489,4611,457,230:-383.143,-346.881,-371.584,-345.631,-334.975,-370.033,-345.792,-335.136,-333.887,-370.194,-11.9044,-1.24773,0,-0.160544,-3.79515,-348.365,-337.709,-336.46,-336.62,-2.73333,-373.068,-368.208,-357.553,-356.303,-356.464,-22.5774,-359.037,-394.718 1|0:88:1,4,3,4,59,1,7:1:31:4,3,4,59,1,7:158,117,152,2218,18,268:-197.861,-185.159,-186.443,-188.628,-178.113,-190.213,-185.709,-175.193,-178.663,-186.992,-18.5568,-8.03613,-11.5073,-8.58751,-3.2828,-196.845,-186.33,-189.799,-186.88,-19.7308,-199.032,-177.121,-166.606,-170.075,-167.155,0,-178.292,-177.502 0|1:93:10,5,3,8,62,1,1:10:386:5,3,8,62,1,1:190,114,302,2278,39,24:-180.58,-168.076,-198.273,-174.326,-190.513,-205.125,-158.844,-175.032,-181.282,-188.139,0,-16.1894,-22.4395,-6.95876,-13.0398,-180.384,-196.572,-202.822,-187.341,-28.4974,-211.785,-182.003,-198.191,-204.441,-188.96,-30.1197,-210.499,-213.404 dDocent_Contig_6838 28 . A C 80.5287 . AB=0.183673;ABP=45.5977;AC=3;AF=0.5;AN=6;AO=9;CIGAR=1X;DP=49;DPB=49;DPRA=0;EPP=22.5536;EPPR=89.8692;GTI=0;LEN=1;MEANALT=1;MQM=40.7778;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=0;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=321;QR=1601;RO=40;RPL=0;RPP=22.5536;RPPR=89.8692;RPR=9;RUN=1;SAF=0;SAP=22.5536;SAR=9;SRF=40;SRP=89.8692;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:31:27,4:27:1084:4:142:-3.58754,0,-88.5135 0/1:3:2,1:2:80:1:37:-2.71791,0,-6.68848 0/1:15:11,4:11:437:4:142:-7.23992,0,-35.1674 dDocent_Contig_6839 26 . G A 399.281 . AB=0.384615;ABP=7.52028;AC=2;AF=0.333333;AN=6;AO=15;CIGAR=1X;DP=62;DPB=62;DPRA=0.847826;EPP=35.5824;EPPR=102.898;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=605;QR=1833;RO=46;RPL=0;RPP=35.5824;RPPR=102.898;RPR=15;RUN=1;SAF=15;SAP=35.5824;SAR=0;SRF=46;SRP=102.898;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:33:21,12:21:836:12:484:-33.9769,0,-65.6205 0/1:6:3,3:3:112:3:121:-9.47402,0,-8.63873 0/0:23:22,0:22:885:0:0:0,-6.62266,-79.5586 dDocent_Contig_6840 69 . A T 152.581 . AB=0.25641;ABP=23.1103;AC=4;AF=0.666667;AN=6;AO=12;CIGAR=1X;DP=41;DPB=41;DPRA=0;EPP=29.068;EPPR=65.983;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=330;QR=971;RO=29;RPL=12;RPP=29.068;RPPR=65.983;RPR=0;RUN=1;SAF=12;SAP=29.068;SAR=0;SRF=29;SRP=65.983;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:27:21,6:21:694:6:168:-7.27008,0,-54.6427 0/1:12:8,4:8:277:4:106:-6.19116,0,-21.6545 1/1:2:0,2:0:0:2:56:-5.31935,-0.60206,0 dDocent_Contig_6842 98 . N T 4343.26 . AB=0;ABP=0;AC=6;AF=1;AN=6;AO=137;CIGAR=1X;DP=137;DPB=137;DPRA=0;EPP=300.502;EPPR=0;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=0;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=4811;QR=0;RO=0;RPL=137;RPP=300.502;RPPR=0;RPR=0;RUN=1;SAF=137;SAP=300.502;SAR=0;SRF=0;SRP=0;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 1/1:102:0,102:0:0:102:3586:-322.949,-30.7051,0 1/1:9:0,9:0:0:9:313:-28.5066,-2.70927,0 1/1:26:0,26:0:0:26:912:-82.394,-7.82678,0 dDocent_Contig_6843 133 . A G 75.8627 . AB=0.263158;ABP=12.2676;AC=2;AF=0.5;AN=4;AO=5;CIGAR=1X;DP=19;DPB=19;DPRA=0;EPP=13.8677;EPPR=33.4109;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=2;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=170;QR=487;RO=14;RPL=0;RPP=13.8677;RPPR=33.4109;RPR=5;RUN=1;SAF=0;SAP=13.8677;SAR=5;SRF=0;SRP=33.4109;SRR=14;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:11:7,4:7:242:4:136:-9.26449,0,-18.8055 ./.:.:.:.:.:.:.:. 0/1:8:7,1:7:245:1:34:-0.990671,0,-19.9826 dDocent_Contig_6844 12 . C T 252.868 . AB=0.170455;ABP=86.0198;AC=2;AF=0.333333;AN=6;AO=15;CIGAR=1X;DP=142;DPB=142;DPRA=0.814815;EPP=35.5824;EPPR=278.787;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=0.976378;PAO=0;PQA=0;PQR=0;PRO=0;QA=606;QR=5093;RO=127;RPL=0;RPP=35.5824;RPPR=278.787;RPR=15;RUN=1;SAF=15;SAP=35.5824;SAR=0;SRF=127;SRP=278.787;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:54:54,0:54:2155:0:0:0,-16.2556,-194.125 0/1:64:58,6:58:2341:6:242:-2.8914,0,-191.569 0/1:24:15,9:15:597:9:364:-25.9,0,-46.8442 dDocent_Contig_6845 7 . T C 416.011 . AB=0.12;ABP=34.3664;AC=3;AF=0.5;AN=6;AO=16;CIGAR=1X;DP=51;DPB=51;DPRA=1.625;EPP=37.7539;EPPR=79.0118;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=598;QR=1338;RO=35;RPL=0;RPP=37.7539;RPPR=79.0118;RPR=16;RUN=1;SAF=16;SAP=37.7539;SAR=0;SRF=35;SRP=79.0118;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:25:22,3:22:837:3:113:-3.01322,0,-68.1267 1/1:14:1,13:1:39:13:485:-40.0963,-0.317856,0 0/0:12:12,0:12:462:0:0:0,-3.61236,-41.9307 dDocent_Contig_6847 19 . G A 243.768 . AB=0.181818;ABP=22.3561;AC=3;AF=0.5;AN=6;AO=9;CIGAR=1X;DP=40;DPB=40;DPRA=1.03846;EPP=22.5536;EPPR=70.3259;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=353;QR=1195;RO=31;RPL=0;RPP=22.5536;RPPR=70.3259;RPR=9;RUN=1;SAF=9;SAP=22.5536;SAR=0;SRF=31;SRP=70.3259;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:22:18,4:18:702:4:159:-8.06878,0,-56.8839 1/1:5:0,5:0:0:5:194:-17.8309,-1.50515,0 0/0:13:13,0:13:493:0:0:0,-3.91339,-44.7027 dDocent_Contig_6849 68 . T G 79.9393 . AB=0.363636;ABP=4.78696;AC=1;AF=0.166667;AN=6;AO=4;CIGAR=1X;DP=26;DPB=26;DPRA=1.46667;EPP=11.6962;EPPR=50.7827;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=142;QR=805;RO=22;RPL=4;RPP=11.6962;RPPR=50.7827;RPR=0;RUN=1;SAF=4;SAP=11.6962;SAR=0;SRF=22;SRP=50.7827;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:13:13,0:13:492:0:0:0,-3.91339,-44.6252 0/0:2:2,0:2:65:0:0:0,-0.60206,-6.17268 0/1:11:7,4:7:248:4:142:-9.81748,0,-19.348 dDocent_Contig_6850 8 . T G 292.186 . AB=0.216216;ABP=54.7735;AC=3;AF=0.5;AN=6;AO=16;CIGAR=1X;DP=74;DPB=74;DPRA=0;EPP=37.7539;EPPR=128.956;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=615;QR=2207;RO=58;RPL=0;RPP=37.7539;RPPR=128.956;RPR=16;RUN=1;SAF=16;SAP=37.7539;SAR=0;SRF=58;SRP=128.956;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:54:42,12:42:1593:12:460:-25.4937,0,-127.376 0/1:12:9,3:9:343:3:116:-7.20534,0,-27.6141 0/1:8:7,1:7:271:1:39:-1.48832,0,-22.3481 dDocent_Contig_6852 39 . A C 196.915 . AB=0.25;ABP=9.52472;AC=1;AF=0.166667;AN=6;AO=3;CIGAR=1X3M;DP=25;DPB=25;DPRA=12;EPP=9.52472;EPPR=33.4109;GTI=0;LEN=1;MEANALT=2;MQM=60;MQMR=60;NS=3;NUMALT=3;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=122;QR=551;RO=14;RPL=0;RPP=9.52472;RPPR=33.4109;RPR=3;RUN=1;SAF=3;SAP=9.52472;SAR=0;SRF=14;SRP=33.4109;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|1:12:7,2,3,0:7:278:2,3,0:82,122,0:-7.95405,-3.29178,-25.5683,0,-16.1043,-21.9722,-10.0613,-26.1704,-22.8753,-32.9402 0|0:1:0,0,0,1:0:0:0,0,1:0,0,41:-4.09457,-4.09457,-4.09457,-4.09457,-4.09457,-4.09457,-0.30103,-0.30103,-0.30103,0 0|0:12:7,1,0,4:7:273:1,0,4:40,0,161:-11.1635,-9.97613,-32.1077,-13.2707,-32.4088,-35.7043,0,-19.1355,-22.4318,-21.2277 dDocent_Contig_6853 13 . C A 69.7415 . AB=0.125;ABP=81.1833;AC=2;AF=0.333333;AN=6;AO=8;CIGAR=1X;DP=107;DPB=107;DPRA=0.744186;EPP=20.3821;EPPR=217.986;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=0.969697;PAO=0;PQA=0;PQR=0;PRO=0;QA=322;QR=3949;RO=99;RPL=0;RPP=20.3821;RPPR=217.986;RPR=8;RUN=1;SAF=8;SAP=20.3821;SAR=0;SRF=99;SRP=217.986;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:40:36,4:36:1457:4:163:-3.01723,0,-119.332 0/1:24:20,4:20:782:4:159:-7.46611,0,-63.4642 0/0:43:43,0:43:1710:0:0:0,-12.9443,-154.116 dDocent_Contig_6854 27 . C T 87.3431 . AB=0.114943;ABP=115.053;AC=1;AF=0.166667;AN=6;AO=12;CIGAR=1X;DP=130;DPB=130;DPRA=4.5;EPP=29.068;EPPR=259.244;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=6.93889e-18;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=482;QR=4683;RO=118;RPL=0;RPP=29.068;RPPR=259.244;RPR=12;RUN=1;SAF=12;SAP=29.068;SAR=0;SRF=118;SRP=259.244;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:87:77,10:77:3085:10:401:-10.2571,0,-251.539 0/0:13:13,0:13:493:0:0:0,-3.91339,-44.7105 0/0:30:28,2:28:1105:2:81:0,-1.34517,-92.0484 dDocent_Contig_6855 30 . T C 1069.98 . AB=0.515152;ABP=3.1419;AC=4;AF=0.666667;AN=6;AO=36;CIGAR=1X;DP=68;DPB=68;DPRA=0;EPP=81.1833;EPPR=72.4974;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=1437;QR=1278;RO=32;RPL=0;RPP=81.1833;RPPR=72.4974;RPR=36;RUN=1;SAF=36;SAP=81.1833;SAR=0;SRF=32;SRP=72.4974;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:45:24,21:24:969:21:840:-62.3704,0,-73.9638 1/1:2:0,2:0:0:2:81:-7.68573,-0.60206,0 0/1:21:8,13:8:309:13:516:-40.4644,0,-21.8461 dDocent_Contig_6856 90 . A T 443.607 . AB=0.153846;ABP=16.5402;AC=1;AF=0.166667;AN=6;AO=2;CIGAR=6M1X;DP=98;DPB=101.286;DPRA=0.928571;EPP=7.35324;EPPR=161.528;GTI=0;LEN=1;MEANALT=2;MQM=60;MQMR=60;NS=3;NUMALT=2;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=70;QR=2497;RO=73;RPL=2;RPP=7.35324;RPPR=161.528;RPR=0;RUN=1;SAF=2;SAP=7.35324;SAR=0;SRF=73;SRP=161.528;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|0:71:49,22,0:49:1679:22,0:736,0:-45.1755,0,-130.026,-59.926,-136.648,-196.237 0|1:13:10,1,2:10:345:1,2:36,70:-2.67846,-2.74802,-30.47,0,-25.0748,-27.4115 0|0:14:14,0,0:14:473:0,0:0,0:0,-4.21442,-42.8936,-4.21442,-42.8936,-42.8936 dDocent_Contig_6858 17 . T A 265.05 . AB=0.26087;ABP=25.858;AC=2;AF=0.333333;AN=6;AO=12;CIGAR=1X;DP=48;DPB=48;DPRA=11.5;EPP=29.068;EPPR=81.1833;GTI=0;LEN=1;MEANALT=1;MQM=58.5833;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=0.777778;PAO=0;PQA=0;PQR=0;PRO=0;QA=481;QR=1381;RO=36;RPL=0;RPP=29.068;RPPR=81.1833;RPR=12;RUN=1;SAF=12;SAP=29.068;SAR=0;SRF=36;SRP=81.1833;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:30:20,10:20:765:10:400:-27.1392,0,-60.1459 0/0:2:2,0:2:78:0:0:0,-0.60206,-7.40347 0/1:16:14,2:14:538:2:81:-2.86925,0,-43.9464 dDocent_Contig_6859 81 . C A 30.9831 . AB=0.15;ABP=24.2907;AC=1;AF=0.25;AN=4;AO=3;CIGAR=1X;DP=30;DPB=30;DPRA=2;EPP=9.52472;EPPR=61.6401;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=2;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=116;QR=1051;RO=27;RPL=3;RPP=9.52472;RPPR=61.6401;RPR=0;RUN=1;SAF=3;SAP=9.52472;SAR=0;SRF=27;SRP=61.6401;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:20:17,3:17:679:3:116:-4.79694,0,-55.4191 ./.:.:.:.:.:.:.:. 0/0:10:10,0:10:372:0:0:0,-3.0103,-33.8262 dDocent_Contig_6860 40 . C G 121.044 . AB=0.3125;ABP=7.89611;AC=1;AF=0.166667;AN=6;AO=5;CIGAR=1X;DP=35;DPB=35;DPRA=1.68421;EPP=13.8677;EPPR=68.1545;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=204;QR=1204;RO=30;RPL=0;RPP=13.8677;RPPR=68.1545;RPR=5;RUN=1;SAF=5;SAP=13.8677;SAR=0;SRF=30;SRP=68.1545;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:18:18,0:18:723:0:0:0,-5.41854,-65.3965 0/0:1:1,0:1:41:0:0:0,-0.30103,-4.09457 0/1:16:11,5:11:440:5:204:-13.9276,0,-35.1381 dDocent_Contig_6861 10 . A C 240.69 . AB=0.122449;ABP=124.347;AC=4;AF=0.666667;AN=6;AO=15;CIGAR=1X5M;DP=101;DPB=99.5;DPRA=0;EPP=35.5824;EPPR=176.728;GTI=0;LEN=1;MEANALT=2.33333;MQM=60;MQMR=60;NS=3;NUMALT=3;ODDS=6.93889e-18;PAIRED=1;PAIREDR=0.9375;PAO=0;PQA=0;PQR=0;PRO=0;QA=610;QR=3145;RO=80;RPL=0;RPP=35.5824;RPPR=176.728;RPR=15;RUN=1;SAF=15;SAP=35.5824;SAR=0;SRF=80;SRP=176.728;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|1:58:50,0,1,7:50:1969:0,1,7:0,37,283:-8.31042,-23.3619,-185.343,-20.3392,-182.316,-182.015,0,-162.009,-158.983,-159.902 1|1:3:0,0,0,3:0:0:0,0,3:0,0,122:-11.3725,-11.3725,-11.3725,-11.3725,-11.3725,-11.3725,-0.90309,-0.90309,-0.90309,0 0|1:40:30,2,2,5:30:1176:2,2,5:78,68,205:-7.90837,-10.5279,-106.634,-11.4365,-101.723,-107.533,0,-90.3128,-91.2119,-95.2193 dDocent_Contig_6862 168 . G A 1158.27 . AB=0.39604;ABP=12.4917;AC=3;AF=0.5;AN=6;AO=40;CIGAR=1X3M;DP=101;DPB=101;DPRA=0;EPP=89.8692;EPPR=83.3548;GTI=0;LEN=1;MEANALT=2.33333;MQM=60;MQMR=60;NS=3;NUMALT=2;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=1531;QR=1407;RO=37;RPL=40;RPP=89.8692;RPPR=83.3548;RPR=0;RUN=1;SAF=0;SAP=89.8692;SAR=40;SRF=0;SRP=83.3548;SRR=37;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|1:60:24,10,26:24:909:10,26:391,1018:-76.4803,-51.5632,-123.069,0,-42.3678,-66.6866 0|1:14:4,4,6:4:154:4,6:154,233:-17.9426,-6.50465,-17.9437,0,-0.0011075,-10.8383 0|1:27:9,9,8:9:344:9,8:358,280:-26.8024,0,-25.5446,-6.75321,-5.48925,-32.5761 dDocent_Contig_6863 13 . G A 38.4936 . AB=0.25;ABP=7.35324;AC=1;AF=0.166667;AN=6;AO=2;CIGAR=1X;DP=20;DPB=20;DPRA=1.33333;EPP=7.35324;EPPR=42.0968;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=82;QR=718;RO=18;RPL=0;RPP=7.35324;RPPR=42.0968;RPR=2;RUN=1;SAF=2;SAP=7.35324;SAR=0;SRF=18;SRP=42.0968;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:8:6,2:6:240:2:82:-5.37144,0,-19.5663 0/0:1:1,0:1:41:0:0:0,-0.30103,-4.09457 0/0:11:11,0:11:437:0:0:0,-3.31133,-39.6823 dDocent_Contig_6864 8 . T A 13006.1 . AB=0.144712;ABP=593.977;AC=1;AF=0.166667;AN=6;AO=78;CIGAR=2X4M;DP=539;DPB=539;DPRA=0;EPP=172.385;EPPR=33.4109;GTI=0;LEN=1;MEANALT=6.66667;MQM=60;MQMR=60;NS=3;NUMALT=4;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=3006;QR=555;RO=14;RPL=0;RPP=172.385;RPPR=33.4109;RPR=78;RUN=1;SAF=78;SAP=172.385;SAR=0;SRF=14;SRP=33.4109;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 1|0:313:7,8,31,53,211:7:279:8,31,53,211:316,1200,2043,8061:-804.052,-780.155,-800.724,-707.785,-704.758,-721.43,-638.394,-635.366,-562.996,-645.416,-144.786,-141.759,-69.3897,0,-104.246 0|0:48:1,9,8,4,23:1:39:9,8,4,23:349,312,155,882:-97.5554,-69.1835,-69.6802,-72.2097,-46.7424,-73.0074,-85.1222,-59.6552,-62.6813,-87.124,-25.466,0,-3.0254,-15.9381,-21.7483 0|0:178:6,8,32,21,104:6:237:8,32,21,104:310,1260,808,3937:-404.524,-380.862,-397.957,-303.219,-297.254,-313.089,-339.991,-334.026,-256.382,-353.172,-83.6077,-77.6434,0,-36.7735,-71.8037 dDocent_Contig_6865 12 . C A 76.9557 . AB=0.139535;ABP=51.5402;AC=1;AF=0.25;AN=4;AO=6;CIGAR=1X;DP=53;DPB=53;DPRA=4.3;EPP=16.0391;EPPR=105.07;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=2;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=0.914894;PAO=0;PQA=0;PQR=0;PRO=0;QA=244;QR=1904;RO=47;RPL=0;RPP=16.0391;RPPR=105.07;RPR=6;RUN=1;SAF=6;SAP=16.0391;SAR=0;SRF=47;SRP=105.07;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:43:37,6:37:1500:6:244:-9.39453,0,-122.296 ./.:.:.:.:.:.:.:. 0/0:10:10,0:10:404:0:0:0,-3.0103,-36.7202 dDocent_Contig_6866 154 . G A 59.9738 . AB=0.16129;ABP=33.9012;AC=2;AF=0.333333;AN=6;AO=5;CIGAR=1X;DP=36;DPB=36;DPRA=3.1;EPP=13.8677;EPPR=70.3259;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=59.8387;NS=3;NUMALT=1;ODDS=1.73472e-18;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=193;QR=1177;RO=31;RPL=0;RPP=13.8677;RPPR=70.3259;RPR=5;RUN=1;SAF=0;SAP=13.8677;SAR=5;SRF=0;SRP=70.3259;SRR=31;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:21:19,2:19:724:2:77:-0.987512,0,-59.1607 0/0:5:5,0:5:191:0:0:0,-1.50515,-17.5584 0/1:10:7,3:7:262:3:116:-7.8074,0,-20.9267 dDocent_Contig_6867 40 . A G 5069.84 . AB=0.795;ABP=154.188;AC=3;AF=0.5;AN=6;AO=159;CIGAR=1X3M;DP=200;DPB=200;DPRA=0;EPP=348.274;EPPR=85.5263;GTI=0;LEN=1;MEANALT=1.33333;MQM=60;MQMR=60;NS=3;NUMALT=2;ODDS=0;PAIRED=0.773585;PAIREDR=0.894737;PAO=0;PQA=0;PQR=0;PRO=0;QA=6352;QR=1493;RO=38;RPL=0;RPP=348.274;RPPR=85.5263;RPR=159;RUN=1;SAF=159;SAP=348.274;SAR=0;SRF=38;SRP=85.5263;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|1:109:18,0,91:18:703:0,91:0,3633:-294.166,-299.584,-357.373,0,-58.1799,-30.7862 0|1:49:12,3,34:12:472:3,34:118,1348:-107.338,-101.244,-139.165,0,-29.1184,-28.5902 0|1:42:8,0,34:8:318:0,34:0,1371:-111.003,-113.411,-139.592,0,-26.5787,-16.3436 dDocent_Contig_6868 55 . G T 117.978 . AB=0.357143;ABP=5.49198;AC=1;AF=0.25;AN=4;AO=5;CIGAR=1X;DP=29;DPB=29;DPRA=0.933333;EPP=13.8677;EPPR=55.1256;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=2;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=0.916667;PAO=0;PQA=0;PQR=0;PRO=0;QA=196;QR=956;RO=24;RPL=5;RPP=13.8677;RPPR=55.1256;RPR=0;RUN=1;SAF=5;SAP=13.8677;SAR=0;SRF=24;SRP=55.1256;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:15:15,0:15:597:0:0:0,-4.51545,-54.066 ./.:.:.:.:.:.:.:. 0/1:14:9,5:9:359:5:196:-13.7978,0,-28.4563 dDocent_Contig_6870 95 . G A 68.2385 . AB=0;ABP=0;AC=2;AF=0.333333;AN=6;AO=2;CIGAR=1X;DP=52;DPB=52;DPRA=0.08;EPP=7.35324;EPPR=111.584;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=70;QR=1719;RO=50;RPL=2;RPP=7.35324;RPPR=111.584;RPR=0;RUN=1;SAF=2;SAP=7.35324;SAR=0;SRF=50;SRP=111.584;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:37:37,0:37:1271:0:0:0,-11.1381,-114.691 1/1:2:0,2:0:0:2:70:-6.6474,-0.60206,0 0/0:13:13,0:13:448:0:0:0,-3.91339,-40.6499 dDocent_Contig_6872 98 . N A 698.049 . AB=0;ABP=0;AC=4;AF=1;AN=4;AO=23;CIGAR=1X;DP=23;DPB=23;DPRA=0;EPP=52.9542;EPPR=0;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=0;NS=2;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=765;QR=0;RO=0;RPL=23;RPP=52.9542;RPPR=0;RPR=0;RUN=1;SAF=23;SAP=52.9542;SAR=0;SRF=0;SRP=0;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 1/1:20:0,20:0:0:20:662:-59.8936,-6.0206,0 ./.:.:.:.:.:.:.:. 1/1:3:0,3:0:0:3:103:-9.61002,-0.90309,0 dDocent_Contig_6873 21 . G A 371.428 . AB=0.204301;ABP=73.6415;AC=2;AF=0.5;AN=4;AO=19;CIGAR=1X;DP=93;DPB=93;DPRA=0;EPP=44.2683;EPPR=161.528;GTI=0;LEN=1;MEANALT=1.5;MQM=60;MQMR=60;NS=2;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=758;QR=2901;RO=73;RPL=0;RPP=44.2683;RPPR=161.528;RPR=19;RUN=1;SAF=19;SAP=44.2683;SAR=0;SRF=73;SRP=161.528;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:59:48,10:48:1913:10:398:-18.3141,0,-154.514 ./.:.:.:.:.:.:.:. 0/1:34:25,9:25:988:9:360:-22.5277,0,-78.9839 dDocent_Contig_6874 16 . A G 247.373 . AB=0.189189;ABP=65.1027;AC=3;AF=0.5;AN=6;AO=14;CIGAR=1X;DP=74;DPB=74;DPRA=0;EPP=33.4109;EPPR=133.299;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=570;QR=2416;RO=60;RPL=0;RPP=33.4109;RPPR=133.299;RPR=14;RUN=1;SAF=14;SAP=33.4109;SAR=0;SRF=60;SRP=133.299;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:42:38,4:38:1545:4:162:-2.3237,0,-126.639 0/1:4:3,1:3:119:1:41:-2.89045,0,-9.89038 0/1:28:19,9:19:752:9:367:-24.9664,0,-59.5723 dDocent_Contig_6875 19 . A C 433.86 . 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AB=0;ABP=0;AC=2;AF=0.333333;AN=6;AO=2;CIGAR=1X2M1X;DP=26;DPB=26;DPRA=0.166667;EPP=7.35324;EPPR=55.1256;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=0;PAIREDR=0.958333;PAO=0;PQA=0;PQR=0;PRO=0;QA=82;QR=953;RO=24;RPL=0;RPP=7.35324;RPPR=55.1256;RPR=2;RUN=1;SAF=2;SAP=7.35324;SAR=0;SRF=24;SRP=55.1256;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|0:15:15,0:15:594:0:0:0,-4.51545,-53.7982 1|1:2:0,2:0:0:2:82:-7.77968,-0.60206,0 0|0:9:9,0:9:359:0:0:0,-2.70927,-32.6739 dDocent_Contig_6877 44 . A G 46.5455 . AB=0.272727;ABP=7.94546;AC=1;AF=0.166667;AN=6;AO=3;CIGAR=1X;DP=101;DPB=101;DPRA=0.244444;EPP=9.52472;EPPR=215.815;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=0.979592;PAO=0;PQA=0;PQR=0;PRO=0;QA=105;QR=3845;RO=98;RPL=0;RPP=9.52472;RPPR=215.815;RPR=3;RUN=1;SAF=3;SAP=9.52472;SAR=0;SRF=98;SRP=215.815;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:66:66,0:66:2591:0:0:0,-19.868,-233.33 0/1:11:8,3:8:311:3:105:-6.47845,0,-25.0394 0/0:24:24,0:24:943:0:0:0,-7.22472,-85.1688 dDocent_Contig_6878 9 . T A 76.7633 . AB=0.109091;ABP=76.0113;AC=1;AF=0.166667;AN=6;AO=6;CIGAR=1M1X9M16I1M1X1M1X3M;DP=81;DPB=101.444;DPRA=3.4375;EPP=16.0391;EPPR=105.07;GTI=0;LEN=1;MEANALT=13;MQM=60;MQMR=60;NS=3;NUMALT=2;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=167;QR=1842;RO=47;RPL=0;RPP=16.0391;RPPR=105.07;RPR=6;RUN=1;SAF=6;SAP=16.0391;SAR=0;SRF=47;SRP=105.07;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|1:55:36,6,1:36:1407:6,1:167,24:-2.37687,0,-113.927,-11.3589,-113.878,-126.789 0|0:10:2,0,3:2:80:0,3:0,114:-8.76542,-9.36748,-15.9689,0,-6.61235,-5.70926 0|0:16:9,0,0:9:355:0,0:0,0:0,-2.70927,-31.9765,-2.70927,-31.9765,-31.9765 dDocent_Contig_6883 47 . C T 30.7084 . AB=0.2;ABP=10.8276;AC=1;AF=0.25;AN=4;AO=2;CIGAR=1X;DP=15;DPB=15;DPRA=2;EPP=7.35324;EPPR=31.2394;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=2;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=82;QR=519;RO=13;RPL=0;RPP=7.35324;RPPR=31.2394;RPR=2;RUN=1;SAF=2;SAP=7.35324;SAR=0;SRF=13;SRP=31.2394;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:10:8,2:8:318:2:82:-4.76938,0,-25.9751 ./.:.:.:.:.:.:.:. 0/0:5:5,0:5:201:0:0:0,-1.50515,-18.4705 dDocent_Contig_6884 11 . T C 50.2092 . AB=0.142857;ABP=41.7866;AC=2;AF=0.333333;AN=6;AO=5;CIGAR=1X;DP=40;DPB=40;DPRA=3.5;EPP=13.8677;EPPR=79.0118;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=3.46945e-18;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=203;QR=1388;RO=35;RPL=0;RPP=13.8677;RPPR=79.0118;RPR=5;RUN=1;SAF=5;SAP=13.8677;SAR=0;SRF=35;SRP=79.0118;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:31:27,4:27:1071:4:162:-5.63503,0,-87.3536 0/0:5:5,0:5:202:0:0:0,-1.50515,-18.5621 0/1:4:3,1:3:115:1:41:-2.89045,0,-9.52091 dDocent_Contig_6886 9 . G A 2178.27 . AB=0.0439883;ABP=618.925;AC=0;AF=0;AN=6;AO=15;CIGAR=1X1M1X1M2X;DP=341;DPB=341;DPRA=0;EPP=35.5824;EPPR=369.989;GTI=0;LEN=1;MEANALT=5;MQM=58.8;MQMR=60;NS=3;NUMALT=4;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=592;QR=6470;RO=169;RPL=0;RPP=35.5824;RPPR=369.989;RPR=15;RUN=1;SAF=15;SAP=35.5824;SAR=0;SRF=169;SRP=369.989;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|0:157:82,11,38,19,7:82:3153:11,38,19,7:434,1481,731,259:-97.0378,-86.0234,-341.554,0,-223.144,-247.403,-61.7066,-284.849,-198.826,-314.827,-100.537,-323.678,-237.656,-299.36,-357.27 0|0:69:47,2,6,5,8:47:1781:2,6,5,8:79,226,185,281:-8.7053,-16.3519,-161.775,-4.33201,-143.858,-148.551,-7.71918,-147.243,-135.224,-152.238,0,-139.516,-127.498,-130.883,-143.608 0|0:115:40,2,41,23,4:40:1536:2,41,23,4:79,1579,875,149:-117.607,-123.149,-248.629,0,-119.585,-113.743,-57.8856,-177.468,-54.322,-177.044,-117.453,-237.035,-113.889,-171.772,-242.33 dDocent_Contig_6887 98 . N T 66.4841 . AB=0;ABP=0;AC=2;AF=1;AN=2;AO=2;CIGAR=1X;DP=2;DPB=2;DPRA=0;EPP=7.35324;EPPR=0;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=0;NS=1;NUMALT=1;ODDS=5.99146;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=70;QR=0;RO=0;RPL=2;RPP=7.35324;RPPR=0;RPR=0;RUN=1;SAF=2;SAP=7.35324;SAR=0;SRF=0;SRP=0;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 1/1:2:0,2:0:0:2:70:-6.64733,-0.60206,0 ./.:.:.:.:.:.:.:. ./.:.:.:.:.:.:.:. dDocent_Contig_6889 43 . G T 2183.43 . AB=0.455026;ABP=6.3307;AC=2;AF=0.333333;AN=6;AO=88;CIGAR=1X;DP=216;DPB=216;DPRA=0;EPP=194.1;EPPR=280.959;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=3169;QR=4398;RO=128;RPL=0;RPP=194.1;RPPR=280.959;RPR=88;RUN=1;SAF=88;SAP=194.1;SAR=0;SRF=128;SRP=280.959;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:133:70,63:70:2436:63:2264:-163.973,0,-179.422 0/0:27:25,2:25:822:2:78:0,-0.724337,-66.8639 0/1:56:33,23:33:1140:23:827:-57.8929,0,-86.039 dDocent_Contig_6891 17 . G A 770.798 . AB=0.2;ABP=46.0055;AC=1;AF=0.166667;AN=6;AO=11;CIGAR=1M1I4M1X;DP=55;DPB=61.5;DPRA=0;EPP=26.8965;EPPR=37.7539;GTI=0;LEN=1;MEANALT=2.33333;MQM=60;MQMR=60;NS=3;NUMALT=2;ODDS=1.38778e-17;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=428;QR=621;RO=16;RPL=0;RPP=26.8965;RPPR=37.7539;RPR=11;RUN=1;SAF=11;SAP=26.8965;SAR=0;SRF=16;SRP=37.7539;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|0:30:9,8,13:9:340:8,13:310,517:-39.8621,-17.109,-42.5563,0,-2.38781,-23.9452 0|1:3:1,1,1:1:40:1,1:40,40:-2.99405,0,-2.99405,0,-1.73718e-08,-2.99405 0|0:22:6,2,13:6:241:2,13:78,503:-39.4987,-34.893,-54.1546,0,-13.4559,-15.9516 dDocent_Contig_6892 49 . A T 38.0287 . AB=0.116667;ABP=79.5909;AC=1;AF=0.166667;AN=6;AO=7;CIGAR=1X;DP=79;DPB=79;DPRA=6.31579;EPP=18.2106;EPPR=7.35324;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=256;QR=2906;RO=72;RPL=7;RPP=18.2106;RPPR=7.35324;RPR=0;RUN=1;SAF=7;SAP=18.2106;SAR=0;SRF=72;SRP=159.356;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:60:53,7:53:2139:7:256:-5.32567,0,-174.623 0/0:7:7,0:7:283:0:0:0,-2.10721,-25.843 0/0:12:12,0:12:484:0:0:0,-3.61236,-43.912 dDocent_Contig_6893 91 . T A 561.9 . AB=0.229814;ABP=105.096;AC=3;AF=0.5;AN=6;AO=37;CIGAR=1X;DP=161;DPB=161;DPRA=0;EPP=83.3548;EPPR=272.273;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=1213;QR=4268;RO=124;RPL=37;RPP=83.3548;RPPR=272.273;RPR=0;RUN=1;SAF=37;SAP=83.3548;SAR=0;SRF=124;SRP=272.273;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:108:84,24:84:2910:24:802:-39.9774,0,-229.637 0/1:4:1,3:1:36:3:106:-8.68498,0,-2.39415 0/1:49:39,10:39:1322:10:305:-12.9957,0,-104.525 dDocent_Contig_6894 21 . T A 803.262 . AB=0.733333;ABP=17.1973;AC=3;AF=0.5;AN=6;AO=25;CIGAR=2X;DP=39;DPB=39;DPRA=2.75;EPP=57.2971;EPPR=33.4109;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=1002;QR=568;RO=14;RPL=0;RPP=57.2971;RPPR=33.4109;RPR=25;RUN=1;SAF=25;SAP=57.2971;SAR=0;SRF=14;SRP=33.4109;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|1:30:8,22:8:325:22:881:-70.5688,0,-20.5882 1|1:3:0,3:0:0:3:121:-11.28,-0.90309,0 0|0:6:6,0:6:243:0:0:0,-1.80618,-22.248 dDocent_Contig_6896 20 . G A 533.288 . AB=0.56;ABP=3.79203;AC=3;AF=0.5;AN=6;AO=17;CIGAR=1X;DP=35;DPB=35;DPRA=2;EPP=39.9253;EPPR=42.0968;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=685;QR=722;RO=18;RPL=0;RPP=39.9253;RPPR=42.0968;RPR=17;RUN=1;SAF=17;SAP=39.9253;SAR=0;SRF=18;SRP=42.0968;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:25:11,14:11:440:14:566:-43.7565,0,-32.4269 1/1:3:0,3:0:0:3:119:-11.095,-0.90309,0 0/0:7:7,0:7:282:0:0:0,-2.10721,-25.7526 dDocent_Contig_6898 13 . A G 80.4154 . AB=0.109091;ABP=149.012;AC=2;AF=0.333333;AN=6;AO=22;CIGAR=1X;DP=245;DPB=245;DPRA=0;EPP=50.7827;EPPR=461.542;GTI=0;LEN=1;MEANALT=1;MQM=59.3636;MQMR=59.8206;NS=3;NUMALT=1;ODDS=1.38778e-17;PAIRED=0;PAIREDR=0.188341;PAO=0;PQA=0;PQR=0;PRO=0;QA=895;QR=8831;RO=223;RPL=0;RPP=50.7827;RPPR=487.249;RPR=22;RUN=1;SAF=22;SAP=50.7827;SAR=0;SRF=220;SRP=461.542;SRR=3;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:135:125,10:125:4975:10:407:0,-3.67924,-410.084 0/1:56:50,6:50:1948:6:243:-5.3905,0,-158.67 0/1:54:48,6:48:1908:6:245:-6.17385,0,-155.666 dDocent_Contig_6899 54 . T C 1150.96 . AB=0.321429;ABP=41.7866;AC=3;AF=0.5;AN=6;AO=45;CIGAR=1X4M;DP=140;DPB=140;DPRA=0;EPP=100.727;EPPR=174.557;GTI=0;LEN=1;MEANALT=2;MQM=60;MQMR=60;NS=3;NUMALT=3;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=1752;QR=2968;RO=79;RPL=45;RPP=100.727;RPPR=174.557;RPR=0;RUN=1;SAF=45;SAP=100.727;SAR=0;SRF=79;SRP=174.557;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|1:86:47,10,29,0:47:1778:10,29,0:384,1132,0:-78.8994,-61.5271,-204.246,0,-114.209,-137.002,-93.0478,-207.256,-145.732,-238.779 0|1:24:21,0,3,0:21:817:0,3,0:0,120,0:-3.96259,-10.2842,-77.4146,0,-67.5285,-66.6254,-10.2842,-77.4146,-67.5285,-77.4146 0|1:30:11,3,13,3:11:373:3,13,3:105,500,109:-37.7554,-32.529,-61.8495,0,-21.6856,-26.3157,-32.1688,-53.8524,-21.325,-61.4903 dDocent_Contig_6900 8 . T G 1169.71 . AB=0.0952381;ABP=32.8939;AC=0;AF=0;AN=6;AO=2;CIGAR=1X2M1X4M;DP=92;DPB=92;DPRA=0;EPP=7.35324;EPPR=70.3259;GTI=0;LEN=1;MEANALT=4;MQM=44;MQMR=60;NS=3;NUMALT=5;ODDS=1.38778e-17;PAIRED=0;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=79;QR=1200;RO=31;RPL=0;RPP=7.35324;RPPR=70.3259;RPR=2;RUN=1;SAF=2;SAP=7.35324;SAR=0;SRF=31;SRP=70.3259;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|0:37:11,0,2,5,2,15:11:426:0,2,5,2,15:0,79,203,78,526:-37.8404,-41.1517,-76.1562,-34.7443,-69.7504,-69.1483,-25.1155,-60.125,-53.7187,-58.6199,-34.7366,-69.7427,-63.3368,-53.711,-69.1407,0,-35.005,-28.5994,-18.9741,-28.5917,-30.4895 0|0:21:3,2,0,0,1,14:3:119:2,0,0,1,14:79,0,0,39,551:-43.8228,-38.4569,-47.6524,-44.7259,-48.2544,-54.5234,-44.7259,-48.2544,-54.5234,-54.5234,-41.5634,-45.092,-51.3609,-51.3609,-51.0599,0,-3.53561,-9.80321,-9.80321,-6.64089,-5.58879 0|0:34:17,0,1,0,2,14:17:655:0,1,0,2,14:0,39,0,80,559:-40.8308,-45.9483,-99.7236,-42.7864,-96.5611,-96.2601,-45.9483,-99.7236,-96.5611,-99.7236,-39.5059,-93.2805,-90.1181,-93.2805,-92.6784,0,-53.7774,-50.6149,-53.7774,-47.3337,-49.563 dDocent_Contig_6905 41 . T C 74.2327 . AB=0.2;ABP=18.6449;AC=1;AF=0.166667;AN=6;AO=4;CIGAR=1X;DP=85;DPB=85;DPRA=0.615385;EPP=11.6962;EPPR=178.9;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=162;QR=3018;RO=81;RPL=0;RPP=11.6962;RPPR=178.9;RPR=4;RUN=1;SAF=4;SAP=11.6962;SAR=0;SRF=81;SRP=178.9;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:20:16,4:16:585:4:162:-8.94615,0,-46.9504 0/0:32:32,0:32:1198:0:0:0,-9.63296,-108.115 0/0:33:33,0:33:1235:0:0:0,-9.93399,-111.434 dDocent_Contig_6906 50 . G C 73.0956 . AB=0.176471;ABP=33.9218;AC=3;AF=0.5;AN=6;AO=6;CIGAR=1X;DP=34;DPB=34;DPRA=0;EPP=16.0391;EPPR=63.8115;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=243;QR=1123;RO=28;RPL=6;RPP=16.0391;RPPR=63.8115;RPR=0;RUN=1;SAF=6;SAP=16.0391;SAR=0;SRF=28;SRP=63.8115;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:15:13,2:13:519:2:81:-3.17028,0,-42.5412 0/1:11:9,2:9:361:2:80:-4.28025,0,-29.5428 0/1:8:6,2:6:243:2:82:-5.37144,0,-19.8399 dDocent_Contig_6907 12 . A G 200.26 . AB=0.28125;ABP=16.3106;AC=2;AF=0.333333;AN=6;AO=9;CIGAR=1X;DP=33;DPB=33;DPRA=16;EPP=22.5536;EPPR=55.1256;GTI=0;LEN=1;MEANALT=1;MQM=47.7778;MQMR=59.75;NS=3;NUMALT=1;ODDS=1.73472e-18;PAIRED=0;PAIREDR=0.833333;PAO=0;PQA=0;PQR=0;PRO=0;QA=367;QR=974;RO=24;RPL=0;RPP=22.5536;RPPR=55.1256;RPR=9;RUN=1;SAF=9;SAP=22.5536;SAR=0;SRF=24;SRP=55.1256;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:19:16,3:16:653:3:123:-5.50159,0,-53.3685 0/0:1:1,0:1:41:0:0:0,-0.30103,-4.09457 0/1:13:7,6:7:280:6:244:-18.0465,0,-21.6573 dDocent_Contig_6908 12 . A G 677.648 . AB=0.0714286;ABP=47.6806;AC=0;AF=0;AN=6;AO=2;CIGAR=1M1X6M1X2M;DP=95;DPB=99.6364;DPRA=0;EPP=7.35324;EPPR=98.5551;GTI=0;LEN=1;MEANALT=5;MQM=60;MQMR=60;NS=3;NUMALT=5;ODDS=0;PAIRED=0;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=74;QR=1750;RO=44;RPL=0;RPP=7.35324;RPPR=98.5551;RPR=2;RUN=1;SAF=2;SAP=7.35324;SAR=0;SRF=44;SRP=98.5551;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|0:48:24,0,0,0,5,12:24:958:0,0,0,5,12:0,0,0,195,483:-32.6124,-39.8371,-118.754,-39.8371,-118.754,-118.754,-39.8371,-118.754,-118.754,-118.754,-23.8051,-102.726,-102.726,-102.726,-101.221,0,-78.9412,-78.9412,-78.9412,-62.9123,-75.3288 0|0:19:8,0,0,0,9,1:8:313:0,0,0,9,1:0,0,0,362,41:-27.4186,-29.8269,-55.5557,-29.8269,-55.5557,-55.5557,-29.8269,-55.5557,-55.5557,-55.5557,0,-25.7191,-25.7191,-25.7191,-23.0098,-26.4421,-52.171,-52.171,-52.171,-22.3334,-51.8699 0|0:28:12,2,2,5,5,2:12:479:2,2,5,5,2:74,80,204,197,80:-13.2241,-10.7863,-49.6342,-10.2458,-43.6461,-49.0957,0,-33.403,-32.8639,-37.9494,-0.630971,-34.031,-33.4919,-23.2482,-38.577,-10.246,-43.6463,-43.1076,-32.8641,-33.4921,-49.0959 dDocent_Contig_6909 21 . C T 988.804 . AB=0.551724;ABP=4.35811;AC=4;AF=0.666667;AN=6;AO=33;CIGAR=1X;DP=59;DPB=59;DPRA=0;EPP=74.6689;EPPR=59.4686;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=1320;QR=1055;RO=26;RPL=0;RPP=74.6689;RPPR=59.4686;RPR=33;RUN=1;SAF=33;SAP=74.6689;SAR=0;SRF=26;SRP=59.4686;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:38:12,26:12:487:26:1036:-82.0886,0,-32.7423 1/1:1:0,1:0:0:1:40:-3.99568,-0.30103,0 0/1:20:14,6:14:568:6:244:-16.3182,0,-45.4422 dDocent_Contig_6910 11 . G A 274.776 . AB=0.1375;ABP=185.631;AC=2;AF=0.333333;AN=6;AO=22;CIGAR=1X;DP=169;DPB=169;DPRA=8.88889;EPP=50.7827;EPPR=322.217;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=59.9388;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=865;QR=5713;RO=147;RPL=0;RPP=50.7827;RPPR=322.217;RPR=22;RUN=1;SAF=22;SAP=50.7827;SAR=0;SRF=147;SRP=322.217;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:104:87,17:87:3392:17:666:-28.9631,0,-274.057 0/0:9:9,0:9:355:0:0:0,-2.70927,-32.3104 0/1:56:51,5:51:1966:5:199:-1.43068,0,-160.282 dDocent_Contig_6911 9 . G A 1756.49 . AB=0.488;ABP=3.16665;AC=4;AF=0.666667;AN=6;AO=64;CIGAR=1X;DP=128;DPB=128;DPRA=0;EPP=141.985;EPPR=139.813;GTI=0;LEN=1;MEANALT=1.33333;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=6.93889e-18;PAIRED=0.046875;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=2399;QR=2392;RO=63;RPL=0;RPP=141.985;RPPR=139.813;RPR=64;RUN=1;SAF=64;SAP=141.985;SAR=0;SRF=63;SRP=139.813;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:94:42,51:42:1593:51:1896:-142.498,0,-115.252 1/1:3:0,3:0:0:3:116:-10.8177,-0.90309,0 0/1:31:21,10:21:799:10:387:-25.8556,0,-62.9041 dDocent_Contig_6912 54 . T C 131.067 . AB=0.157895;ABP=22.325;AC=0;AF=0;AN=6;AO=6;CIGAR=1X1M1X2M1X3M1X1M1X;DP=55;DPB=54.8333;DPRA=13.25;EPP=16.0391;EPPR=87.6977;GTI=0;LEN=1;MEANALT=2;MQM=60;MQMR=60;NS=3;NUMALT=2;ODDS=6.93889e-18;PAIRED=0;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=218;QR=1440;RO=39;RPL=6;RPP=16.0391;RPPR=87.6977;RPR=0;RUN=1;SAF=6;SAP=16.0391;SAR=0;SRF=39;SRP=87.6977;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|0:34:30,3,1:30:1103:3,1:104,32:0,-0.559377,-89.8785,-6.45918,-88.2048,-96.3534 0|0:2:0,0,1:0:0:0,1:0,25:-2.23806,-2.23806,-2.23806,-0.30103,-0.30103,0 0|0:19:9,3,7:9:337:3,7:114,192:-12.388,-5.71625,-32.4705,0,-18.2462,-25.4898 dDocent_Contig_6914 8 . T C 706.148 . AB=0.224359;ABP=105.96;AC=3;AF=0.5;AN=6;AO=35;CIGAR=1X;DP=156;DPB=156;DPRA=0;EPP=79.0118;EPPR=265.758;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=1356;QR=4667;RO=121;RPL=0;RPP=79.0118;RPPR=265.758;RPR=35;RUN=1;SAF=35;SAP=79.0118;SAR=0;SRF=121;SRP=265.758;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:104:84,20:84:3250:20:775:-38.7711,0,-261.334 0/1:15:11,4:11:422:4:155:-9.80999,0,-33.8172 0/1:37:26,11:26:995:11:426:-27.5566,0,-78.7223 dDocent_Contig_6915 47 . G A 2050.09 . AB=0.717949;ABP=35.1926;AC=4;AF=0.666667;AN=6;AO=65;CIGAR=1X3M1X;DP=87;DPB=87;DPRA=0;EPP=144.156;EPPR=50.7827;GTI=0;LEN=1;MEANALT=1;MQM=59.3077;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=0.923077;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=2569;QR=852;RO=22;RPL=65;RPP=144.156;RPPR=50.7827;RPR=0;RUN=1;SAF=65;SAP=144.156;SAR=0;SRF=22;SRP=50.7827;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|1:59:15,44:15:593:44:1743:-139.202,0,-35.9482 1|1:9:0,9:0:0:9:345:-31.4074,-2.70927,0 0|1:19:7,12:7:259:12:481:-37.9224,0,-17.937 dDocent_Contig_6916 65 . T C 473.044 . AB=0.382353;ABP=7.09778;AC=4;AF=0.666667;AN=6;AO=17;CIGAR=1X;DP=38;DPB=38;DPRA=0;EPP=39.9253;EPPR=48.6112;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=666;QR=849;RO=21;RPL=17;RPP=39.9253;RPPR=48.6112;RPR=0;RUN=1;SAF=17;SAP=39.9253;SAR=0;SRF=21;SRP=48.6112;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:17:13,4:13:524:4:161:-9.75797,0,-42.3894 1/1:4:0,4:0:0:4:161:-14.8753,-1.20412,0 0/1:17:8,9:8:325:9:344:-26.1939,0,-24.5021 dDocent_Contig_6917 62 . T G 49.9631 . AB=0.230769;ABP=11.1951;AC=1;AF=0.25;AN=4;AO=3;CIGAR=1X;DP=26;DPB=26;DPRA=1;EPP=9.52472;EPPR=52.9542;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=2;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=117;QR=893;RO=23;RPL=3;RPP=9.52472;RPPR=52.9542;RPR=0;RUN=1;SAF=3;SAP=9.52472;SAR=0;SRF=23;SRP=52.9542;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:13:13,0:13:502:0:0:0,-3.91339,-45.5239 ./.:.:.:.:.:.:.:. 0/1:13:10,3:10:391:3:117:-6.99631,0,-31.6334 dDocent_Contig_6918 10 . T C 155.696 . AB=0.136364;ABP=28.2783;AC=1;AF=0.166667;AN=6;AO=3;CIGAR=1X5M;DP=38;DPB=38;DPRA=2.75;EPP=9.52472;EPPR=52.9542;GTI=0;LEN=1;MEANALT=3;MQM=60;MQMR=60;NS=3;NUMALT=3;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=123;QR=925;RO=23;RPL=0;RPP=9.52472;RPPR=52.9542;RPR=3;RUN=1;SAF=3;SAP=9.52472;SAR=0;SRF=23;SRP=52.9542;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|1:22:8,5,6,3:8:320:5,6,3:199,237,123:-17.0904,-3.11403,-27.9679,0,-9.97387,-24.5516,-9.34353,-19.3187,-16.2035,-34.8009 0|0:2:2,0,0,0:2:82:0,0,0:0,0,0:0,-0.60206,-7.77968,-0.60206,-7.77968,-7.77968,-0.60206,-7.77968,-7.77968,-7.77968 0|0:14:13,0,1,0:13:523:0,1,0:0,40,0:0,-3.91339,-47.0184,-0.218741,-43.7234,-43.4224,-3.91339,-47.0184,-43.7234,-47.0184 dDocent_Contig_6919 15 . C A 398.388 . AB=0.666667;ABP=8.07707;AC=1;AF=0.166667;AN=6;AO=14;CIGAR=1X3M4I1M1X;DP=33;DPB=42.3333;DPRA=3.5;EPP=33.4109;EPPR=44.2683;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=1.73472e-18;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=526;QR=759;RO=19;RPL=0;RPP=33.4109;RPPR=44.2683;RPR=14;RUN=1;SAF=14;SAP=33.4109;SAR=0;SRF=19;SRP=44.2683;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|1:21:7,14:7:281:14:526:-41.3616,0,-19.3409 0|0:5:5,0:5:200:0:0:0,-1.50515,-18.3799 0|0:7:7,0:7:278:0:0:0,-2.10721,-25.3891 dDocent_Contig_6921 65 . G A 242.47 . AB=0.25;ABP=13.8677;AC=3;AF=0.5;AN=6;AO=9;CIGAR=1X;DP=33;DPB=33;DPRA=1.33333;EPP=22.5536;EPPR=55.1256;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=345;QR=888;RO=24;RPL=9;RPP=22.5536;RPPR=55.1256;RPR=0;RUN=1;SAF=9;SAP=22.5536;SAR=0;SRF=24;SRP=55.1256;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:20:15,5:15:565:5:194:-11.8122,0,-45.166 1/1:4:0,4:0:0:4:151:-13.9575,-1.20412,0 0/0:9:9,0:9:323:0:0:0,-2.70927,-29.4136 dDocent_Contig_6922 38 . T G 141.137 . AB=0.363636;ABP=4.78696;AC=3;AF=0.5;AN=6;AO=5;CIGAR=1X;DP=21;DPB=21;DPRA=0.666667;EPP=13.8677;EPPR=37.7539;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=202;QR=638;RO=16;RPL=0;RPP=13.8677;RPPR=37.7539;RPR=5;RUN=1;SAF=5;SAP=13.8677;SAR=0;SRF=16;SRP=37.7539;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:9:9,0:9:355:0:0:0,-2.70927,-32.3066 1/1:1:0,1:0:0:1:38:-3.79727,-0.30103,0 0/1:11:7,4:7:283:4:164:-11.8386,0,-22.5323 dDocent_Contig_6923 21 . C A 96.7109 . AB=0.181818;ABP=32.0291;AC=1;AF=0.166667;AN=6;AO=7;CIGAR=1X;DP=87;DPB=87;DPRA=2.60714;EPP=18.2106;EPPR=176.728;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=3.46945e-18;PAIRED=1;PAIREDR=0.875;PAO=0;PQA=0;PQR=0;PRO=0;QA=272;QR=3175;RO=80;RPL=0;RPP=18.2106;RPPR=176.728;RPR=7;RUN=1;SAF=7;SAP=18.2106;SAR=0;SRF=80;SRP=176.728;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:40:39,1:39:1567:1:38:0,-8.24393,-137.471 0/0:14:14,0:14:537:0:0:0,-4.21442,-48.6559 0/1:33:27,6:27:1071:6:234:-11.495,0,-86.7456 dDocent_Contig_6925 137 . A G 30.9598 . AB=0.333333;ABP=4.45795;AC=1;AF=0.166667;AN=6;AO=2;CIGAR=1X;DP=51;DPB=51;DPRA=0.266667;EPP=3.0103;EPPR=109.412;GTI=0;LEN=1;MEANALT=1;MQM=40;MQMR=51.1224;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=0.795918;PAO=0;PQA=0;PQR=0;PRO=0;QA=75;QR=1572;RO=49;RPL=0;RPP=7.35324;RPPR=109.412;RPR=2;RUN=1;SAF=1;SAP=3.0103;SAR=1;SRF=0;SRP=109.412;SRR=49;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:30:30,0:30:979:0:0:0,-9.0309,-85.4075 0/1:6:4,2:4:137:2:75:-4.91953,0,-6.30515 0/0:15:15,0:15:456:0:0:0,-4.51545,-34.48 dDocent_Contig_6926 12 . T A 217.696 . AB=0.229167;ABP=33.5919;AC=3;AF=0.5;AN=6;AO=11;CIGAR=1X;DP=48;DPB=48;DPRA=0;EPP=26.8965;EPPR=83.3548;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=450;QR=1487;RO=37;RPL=0;RPP=26.8965;RPPR=83.3548;RPR=11;RUN=1;SAF=11;SAP=26.8965;SAR=0;SRF=37;SRP=83.3548;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:31:25,6:25:1004:6:246:-13.1882,0,-81.3243 0/1:6:5,1:5:203:1:41:-2.28839,0,-16.8469 0/1:11:7,4:7:280:4:163:-11.7471,0,-22.2604 dDocent_Contig_6927 1 . N G 114.653 . AB=0;ABP=0;AC=2;AF=1;AN=2;AO=3;CIGAR=1X;DP=3;DPB=3;DPRA=0;EPP=9.52472;EPPR=0;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=0;NS=1;NUMALT=1;ODDS=6.68461;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=123;QR=0;RO=0;RPL=0;RPP=9.52472;RPPR=0;RPR=3;RUN=1;SAF=3;SAP=9.52472;SAR=0;SRF=0;SRP=0;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 1/1:3:0,3:0:0:3:123:-11.4648,-0.90309,0 ./.:.:.:.:.:.:.:. ./.:.:.:.:.:.:.:. dDocent_Contig_6928 44 . G T 94.287 . AB=0.193548;ABP=28.2974;AC=2;AF=0.333333;AN=6;AO=7;CIGAR=1X;DP=114;DPB=114;DPRA=0;EPP=18.2106;EPPR=235.358;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=280;QR=4251;RO=107;RPL=0;RPP=18.2106;RPPR=235.358;RPR=7;RUN=1;SAF=7;SAP=18.2106;SAR=0;SRF=107;SRP=235.358;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:83:82,1:82:3262:1:41:0,-20.8909,-289.548 0/1:9:7,2:7:276:2:80:-4.8823,0,-22.4989 0/1:22:18,4:18:713:4:159:-8.06909,0,-57.8709 dDocent_Contig_6930 112 . G A 45.212 . AB=0.230769;ABP=11.1951;AC=1;AF=0.166667;AN=6;AO=3;CIGAR=1X2M1X2M1X;DP=21;DPB=21;DPRA=3.25;EPP=9.52472;EPPR=39.9253;GTI=0;LEN=1;MEANALT=2;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=105;QR=564;RO=17;RPL=0;RPP=9.52472;RPPR=39.9253;RPR=3;RUN=1;SAF=0;SAP=9.52472;SAR=3;SRF=0;SRP=39.9253;SRR=17;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|1:13:9,3:9:287:3:105:-6.04384,0,-22.434 0|0:3:3,0:3:104:0:0:0,-0.90309,-9.70309 0|0:5:5,0:5:173:0:0:0,-1.50515,-15.9102 dDocent_Contig_6931 34 . G T 43.388 . AB=0.176471;ABP=18.4661;AC=1;AF=0.166667;AN=6;AO=7;CIGAR=1X;DP=137;DPB=137;DPRA=0;EPP=18.2106;EPPR=285.302;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=285;QR=5057;RO=130;RPL=0;RPP=18.2106;RPPR=285.302;RPR=7;RUN=1;SAF=7;SAP=18.2106;SAR=0;SRF=130;SRP=285.302;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:67:64,3:64:2450:3:123:0,-8.70422,-209.189 0/1:17:14,3:14:551:3:121:-6.16269,0,-44.8161 0/0:53:52,1:52:2056:1:41:0,-11.86,-181.141 dDocent_Contig_6932 8 . T C 7757.47 . AB=0.72191;ABP=155.282;AC=3;AF=0.5;AN=6;AO=257;CIGAR=1X;DP=356;DPB=356;DPRA=0;EPP=561.079;EPPR=217.986;GTI=0;LEN=1;MEANALT=1;MQM=59.9844;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=9867;QR=3819;RO=99;RPL=0;RPP=561.079;RPPR=217.986;RPR=257;RUN=1;SAF=257;SAP=561.079;SAR=0;SRF=99;SRP=217.986;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:223:68,155:68:2627:155:5988:-471.721,0,-169.488 0/1:50:6,44:6:234:44:1703:-138.476,0,-6.3796 0/1:83:25,58:25:958:58:2176:-171.074,0,-61.5473 dDocent_Contig_6933 174 . A G 452.57 . AB=0.533333;ABP=3.29983;AC=2;AF=0.333333;AN=6;AO=16;CIGAR=1X;DP=36;DPB=36;DPRA=2.5;EPP=37.7539;EPPR=46.4397;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=634;QR=784;RO=20;RPL=16;RPP=37.7539;RPPR=46.4397;RPR=0;RUN=1;SAF=0;SAP=37.7539;SAR=16;SRF=0;SRP=46.4397;SRR=20;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:26:11,15:11:438:15:597:-46.242,0,-31.9488 0/1:4:3,1:3:116:1:37:-2.49371,0,-9.6129 0/0:6:6,0:6:230:0:0:0,-1.80618,-21.0632 dDocent_Contig_6936 14 . A T 613.627 . AB=0.578947;ABP=5.06748;AC=3;AF=0.5;AN=6;AO=22;CIGAR=1X;DP=38;DPB=38;DPRA=0;EPP=50.7827;EPPR=37.7539;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=3.46945e-18;PAIRED=0;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=857;QR=645;RO=16;RPL=0;RPP=50.7827;RPPR=37.7539;RPR=22;RUN=1;SAF=22;SAP=50.7827;SAR=0;SRF=16;SRP=37.7539;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:25:6,19:6:244:19:737:-59.1267,0,-14.8131 0/1:6:5,1:5:199:1:40:-2.1895,0,-16.4825 0/1:7:5,2:5:202:2:80:-5.48458,0,-16.4549 dDocent_Contig_6937 7 . T C 45.9652 . AB=0.131579;ABP=47.8112;AC=1;AF=0.166667;AN=6;AO=6;CIGAR=1X;DP=96;DPB=96;DPRA=1.58696;EPP=16.0391;EPPR=196.271;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=3.46945e-18;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=230;QR=3389;RO=89;RPL=0;RPP=16.0391;RPPR=196.271;RPR=6;RUN=1;SAF=6;SAP=16.0391;SAR=0;SRF=89;SRP=196.271;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:38:33,5:33:1265:5:191:-6.11938,0,-102.703 0/0:23:22,0:22:837:0:0:0,-6.62266,-75.5402 0/0:35:34,1:34:1287:1:39:0,-6.63949,-112.225 dDocent_Contig_6938 15 . A T 213.869 . AB=0.205128;ABP=32.4644;AC=2;AF=0.333333;AN=6;AO=8;CIGAR=1X3M1X;DP=39;DPB=39;DPRA=0;EPP=20.3821;EPPR=59.4686;GTI=0;LEN=1;MEANALT=1.66667;MQM=60;MQMR=60;NS=3;NUMALT=2;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=306;QR=1030;RO=26;RPL=0;RPP=20.3821;RPPR=59.4686;RPR=8;RUN=1;SAF=8;SAP=20.3821;SAR=0;SRF=26;SRP=59.4686;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|0:20:17,1,2:17:671:1,2:40,76:-1.10215,-2.91796,-57.8419,0,-51.9115,-54.6049 1|0:9:1,5,3:1:40:5,3:187,107:-20.404,-5.38369,-7.18439,-11.9896,0,-14.3859 0|1:10:8,2,0:8:319:2,0:79,0:-4.48733,0,-26.0671,-6.89557,-26.6692,-33.1694 dDocent_Contig_6940 26 . T C 38.4985 . AB=0.148148;ABP=32.0437;AC=1;AF=0.25;AN=4;AO=4;CIGAR=1X;DP=39;DPB=39;DPRA=2.25;EPP=11.6962;EPPR=79.0118;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=2;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=148;QR=1408;RO=35;RPL=0;RPP=11.6962;RPPR=79.0118;RPR=4;RUN=1;SAF=4;SAP=11.6962;SAR=0;SRF=35;SRP=79.0118;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:27:23,4:23:919:4:148:-5.54876,0,-74.8816 ./.:.:.:.:.:.:.:. 0/0:12:12,0:12:489:0:0:0,-3.61236,-44.3613 dDocent_Contig_6941 9 . G A 65.5851 . AB=0.15625;ABP=35.8538;AC=1;AF=0.166667;AN=6;AO=6;CIGAR=1X;DP=106;DPB=106;DPRA=0.652174;EPP=16.0391;EPPR=220.158;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=59.66;NS=3;NUMALT=1;ODDS=3.46945e-18;PAIRED=1;PAIREDR=0.99;PAO=0;PQA=0;PQR=0;PRO=0;QA=235;QR=3787;RO=100;RPL=0;RPP=16.0391;RPPR=220.158;RPR=6;RUN=1;SAF=6;SAP=16.0391;SAR=0;SRF=100;SRP=220.158;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:46:46,0:46:1766:0:0:0,-13.8474,-159.196 0/0:28:27,1:27:1025:1:39:0,-4.53228,-87.6411 0/1:32:27,5:27:996:5:196:-8.38242,0,-80.3086 dDocent_Contig_6942 143 . C T 428.976 . AB=0.533333;ABP=3.29983;AC=2;AF=0.5;AN=4;AO=16;CIGAR=1X;DP=30;DPB=30;DPRA=0;EPP=37.7539;EPPR=33.4109;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=2;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=610;QR=534;RO=14;RPL=0;RPP=37.7539;RPPR=33.4109;RPR=16;RUN=1;SAF=0;SAP=37.7539;SAR=16;SRF=0;SRP=33.4109;SRR=14;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:20:6,14:6:231:14:532:-42.2026,0,-15.1371 ./.:.:.:.:.:.:.:. 0/1:10:8,2:8:303:2:78:-4.39317,0,-24.6161 dDocent_Contig_6943 92 . T A 257.667 . AB=0.325581;ABP=14.3727;AC=3;AF=0.5;AN=6;AO=14;CIGAR=1X3M1X;DP=43;DPB=43;DPRA=0;EPP=33.4109;EPPR=65.983;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=3.46945e-18;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=480;QR=973;RO=29;RPL=14;RPP=33.4109;RPPR=65.983;RPR=0;RUN=1;SAF=14;SAP=33.4109;SAR=0;SRF=29;SRP=65.983;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|1:12:10,2:10:338:2:69:-2.9403,0,-27.136 0|1:15:12,3:12:397:3:104:-5.18764,0,-31.5348 0|1:16:7,9:7:238:9:307:-23.1452,0,-16.9365 dDocent_Contig_6945 20 . C T 606.959 . AB=0.44;ABP=4.57376;AC=1;AF=0.166667;AN=6;AO=22;CIGAR=1X;DP=66;DPB=66;DPRA=6.25;EPP=50.7827;EPPR=98.5551;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=0.909091;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=855;QR=1786;RO=44;RPL=0;RPP=50.7827;RPPR=98.5551;RPR=22;RUN=1;SAF=22;SAP=50.7827;SAR=0;SRF=44;SRP=98.5551;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:50:28,22:28:1138:22:855:-62.2184,0,-87.6462 0/0:2:2,0:2:81:0:0:0,-0.60206,-7.68573 0/0:14:14,0:14:567:0:0:0,-4.21442,-51.3729 dDocent_Contig_6946 130 . C T 1040.23 . AB=0.607143;ABP=8.59409;AC=2;AF=0.5;AN=4;AO=34;CIGAR=1X2M1X3M;DP=56;DPB=56;DPRA=0;EPP=76.8404;EPPR=26.8965;GTI=0;LEN=1;MEANALT=4;MQM=59.4706;MQMR=60;NS=2;NUMALT=3;ODDS=0;PAIRED=0;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=1348;QR=368;RO=11;RPL=0;RPP=76.8404;RPPR=26.8965;RPR=34;RUN=1;SAF=34;SAP=76.8404;SAR=0;SRF=0;SRP=26.8965;SRR=11;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|1:40:5,25,5,2:5:172:25,5,2:991,198,80:-80.0419,0,-6.44633,-69.5823,-2.01369,-82.0398,-74.9556,-7.37254,-76.9539,-88.3186 .:.:.:.:.:.:.:. 0|1:16:6,9,1,0:6:196:9,1,0:357,41,0:-27.6778,0,-13.1531,-27.2098,-13.5829,-42.7097,-29.484,-15.8624,-43.0107,-45.2907 dDocent_Contig_6948 98 . N T 418.43 . AB=0;ABP=0;AC=4;AF=1;AN=4;AO=13;CIGAR=1X;DP=13;DPB=13;DPRA=0;EPP=31.2394;EPPR=0;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=0;NS=2;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=454;QR=0;RO=0;RPL=13;RPP=31.2394;RPPR=0;RPR=0;RUN=1;SAF=13;SAP=31.2394;SAR=0;SRF=0;SRP=0;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 1/1:7:0,7:0:0:7:241:-22.0259,-2.10721,0 ./.:.:.:.:.:.:.:. 1/1:6:0,6:0:0:6:213:-19.516,-1.80618,0 dDocent_Contig_6949 9 . G A 630.271 . AB=0.128205;ABP=49.8362;AC=1;AF=0.166667;AN=6;AO=5;CIGAR=1X1M1X1M;DP=155;DPB=155;DPRA=0;EPP=13.8677;EPPR=237.529;GTI=0;LEN=1;MEANALT=3;MQM=60;MQMR=60;NS=3;NUMALT=3;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=193;QR=4078;RO=108;RPL=0;RPP=13.8677;RPPR=237.529;RPR=5;RUN=1;SAF=5;SAP=13.8677;SAR=0;SRF=108;SRP=237.529;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|0:93:64,0,19,5:64:2415:0,19,5:0,735,195:-41.1083,-60.3742,-258.296,0,-197.919,-192.2,-44.3451,-242.267,-181.89,-240.762 0|0:23:14,0,8,0:14:531:0,8,0:0,303,0:-20.6172,-24.8316,-68.3717,0,-43.5306,-41.1223,-24.8316,-68.3717,-43.5306,-68.3717 0|1:39:30,5,0,3:30:1132:5,0,3:193,0,113:-6.82445,0,-91.2684,-15.8553,-92.7735,-108.625,-6.59807,-83.5135,-99.3654,-98.4623 dDocent_Contig_6950 107 . N A 75.5077 . AB=0;ABP=0;AC=4;AF=1;AN=4;AO=5;CIGAR=1X3M1X;DP=5;DPB=5;DPRA=0;EPP=13.8677;EPPR=0;GTI=0;LEN=1;MEANALT=1;MQM=15.4;MQMR=0;NS=2;NUMALT=1;ODDS=0;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=174;QR=0;RO=0;RPL=0;RPP=13.8677;RPPR=0;RPR=5;RUN=1;SAF=0;SAP=13.8677;SAR=5;SRF=0;SRP=0;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL .:.:.:.:.:.:.:. 1|1:1:0,1:0:0:1:34:-2.07893,-0.30103,0 1|1:4:0,4:0:0:4:140:-5.16779,-1.20412,0 dDocent_Contig_6951 22 . T G 195.754 . AB=0.135135;ABP=131.362;AC=1;AF=0.166667;AN=6;AO=17;CIGAR=1X;DP=176;DPB=176;DPRA=0;EPP=39.9253;EPPR=348.274;GTI=0;LEN=1;MEANALT=1;MQM=59.8235;MQMR=59.566;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=0.786164;PAO=0;PQA=0;PQR=0;PRO=0;QA=683;QR=6382;RO=159;RPL=0;RPP=39.9253;RPPR=348.274;RPR=17;RUN=1;SAF=17;SAP=39.9253;SAR=0;SRF=159;SRP=348.274;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:111:96,15:96:3853:15:602:-21.0983,0,-313.345 0/0:26:25,1:25:1001:1:40:0,-3.8311,-84.624 0/0:39:38,1:38:1528:1:41:0,-7.6456,-133.663 dDocent_Contig_6953 21 . T G 459.461 . AB=0.382979;ABP=8.60069;AC=2;AF=0.333333;AN=6;AO=18;CIGAR=1X;DP=49;DPB=49;DPRA=11.75;EPP=42.0968;EPPR=70.3259;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=699;QR=1252;RO=31;RPL=0;RPP=42.0968;RPPR=70.3259;RPR=18;RUN=1;SAF=18;SAP=42.0968;SAR=0;SRF=31;SRP=70.3259;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:26:17,9:17:684:9:352:-24.2083,0,-54.061 0/0:2:2,0:2:81:0:0:0,-0.60206,-7.68573 0/1:21:12,9:12:487:9:347:-25.2603,0,-37.8595 dDocent_Contig_6954 19 . A T 509.572 . AB=0.24;ABP=61.7269;AC=2;AF=0.333333;AN=6;AO=26;CIGAR=1X2M2X;DP=127;DPB=128.4;DPRA=0;EPP=59.4686;EPPR=217.986;GTI=0;LEN=1;MEANALT=1.66667;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=1008;QR=3884;RO=99;RPL=0;RPP=59.4686;RPPR=217.986;RPR=26;RUN=1;SAF=26;SAP=59.4686;SAR=0;SRF=99;SRP=217.986;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|1:95:72,22:72:2829:22:859:-48.9601,0,-226.082 0|1:5:3,2:3:116:2:74:-5.51971,0,-9.31225 0|0:27:24,2:24:939:2:75:0,-0.891596,-77.7764 dDocent_Contig_6955 37 . G A 647.176 . AB=0.536585;ABP=3.48696;AC=2;AF=0.333333;AN=6;AO=22;CIGAR=2X;DP=46;DPB=46;DPRA=4.1;EPP=50.7827;EPPR=55.1256;GTI=0;LEN=1;MEANALT=1;MQM=59;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=0.954545;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=890;QR=959;RO=24;RPL=0;RPP=50.7827;RPPR=55.1256;RPR=22;RUN=1;SAF=22;SAP=50.7827;SAR=0;SRF=24;SRP=55.1256;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|1:28:15,13:15:602:13:527:-39.119,0,-46.0904 0|0:5:5,0:5:198:0:0:0,-1.50515,-18.1965 0|1:13:4,9:4:159:9:363:-29.1215,0,-10.7781 dDocent_Contig_6957 58 . G A 695.04 . AB=0.235294;ABP=85.7817;AC=3;AF=0.5;AN=6;AO=32;CIGAR=1X2M;DP=136;DPB=136;DPRA=0;EPP=72.4974;EPPR=220.158;GTI=0;LEN=1;MEANALT=1.66667;MQM=60;MQMR=60;NS=3;NUMALT=2;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=1272;QR=3866;RO=100;RPL=32;RPP=72.4974;RPPR=220.158;RPR=0;RUN=1;SAF=32;SAP=72.4974;SAR=0;SRF=100;SRP=220.158;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|1:83:61,1,21:61:2398:1,21:40,825:-49.4792,-64.5466,-261.479,0,-193.931,-190.905 0|1:9:5,0,4:5:194:0,4:0,161:-12.1656,-13.6708,-29.6016,0,-16.3265,-15.1224 0|1:44:34,3,7:34:1274:3,7:115,286:-13.3821,-14.1858,-117.588,0,-94.8859,-102.218 dDocent_Contig_6958 55 . A C 764.527 . AB=0.590909;ABP=6.16881;AC=3;AF=0.5;AN=6;AO=26;CIGAR=1X;DP=44;DPB=44;DPRA=0;EPP=59.4686;EPPR=42.0968;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=0.884615;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=1046;QR=727;RO=18;RPL=26;RPP=59.4686;RPPR=42.0968;RPR=0;RUN=1;SAF=26;SAP=59.4686;SAR=0;SRF=18;SRP=42.0968;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:30:12,18:12:489:18:724:-56.4544,0,-35.3304 0/1:2:1,1:1:36:1:35:-2.89657,0,-2.99621 0/1:12:5,7:5:202:7:287:-22.5929,0,-14.9497 dDocent_Contig_6959 60 . G A 373.004 . 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AB=0.229167;ABP=33.5919;AC=3;AF=0.5;AN=6;AO=11;CIGAR=1X;DP=48;DPB=48;DPRA=0;EPP=26.8965;EPPR=83.3548;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=415;QR=1355;RO=37;RPL=0;RPP=26.8965;RPPR=83.3548;RPR=11;RUN=1;SAF=11;SAP=26.8965;SAR=0;SRF=37;SRP=83.3548;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:23:17,6:17:612:6:218:-13.0446,0,-48.4755 0/1:4:1,3:1:39:3:118:-9.7986,0,-2.69244 0/1:21:19,2:19:704:2:79:-1.176,0,-57.362 dDocent_Contig_6962 29 . T C 2442.3 . AB=0.625;ABP=20.3821;AC=3;AF=0.5;AN=6;AO=80;CIGAR=1X;DP=128;DPB=128;DPRA=0;EPP=176.728;EPPR=107.241;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=3193;QR=1905;RO=48;RPL=0;RPP=176.728;RPPR=107.241;RPR=80;RUN=1;SAF=80;SAP=176.728;SAR=0;SRF=48;SRP=107.241;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:98:35,63:35:1395:63:2504:-196,0,-96.2994 0/1:5:4,1:4:153:1:41:-2.58942,0,-12.6319 0/1:25:9,16:9:357:16:648:-51.1274,0,-24.9628 dDocent_Contig_6964 7 . T C 37.9893 . AB=0.104762;ABP=145.48;AC=1;AF=0.166667;AN=6;AO=29;CIGAR=1X;DP=726;DPB=726;DPRA=0;EPP=65.983;EPPR=28.2817;GTI=0;LEN=1;MEANALT=1.33333;MQM=47.9655;MQMR=42.4655;NS=3;NUMALT=1;ODDS=0;PAIRED=0.827586;PAIREDR=0.558908;PAO=0;PQA=0;PQR=0;PRO=0;QA=1115;QR=26147;RO=696;RPL=0;RPP=65.983;RPPR=1514.36;RPR=29;RUN=1;SAF=29;SAP=65.983;SAR=0;SRF=393;SRP=28.2817;SRR=303;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:410:407,3:407:15280:3:117:0,-117.733,-1136.16 0/1:105:94,11:94:3537:11:424:-5.62276,0,-212.876 0/0:211:195,15:195:7330:15:574:0,-19.1899,-524.123 dDocent_Contig_6965 14 . G A 74.9016 . AB=0.14;ABP=59.2949;AC=2;AF=0.333333;AN=6;AO=8;CIGAR=1X;DP=75;DPB=75;DPRA=0;EPP=20.3821;EPPR=148.499;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=0.985075;PAO=0;PQA=0;PQR=0;PRO=0;QA=321;QR=2612;RO=67;RPL=0;RPP=20.3821;RPPR=148.499;RPR=8;RUN=1;SAF=8;SAP=20.3821;SAR=0;SRF=67;SRP=148.499;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:25:24,1:24:948:1:40:0,-3.53007,-81.6264 0/1:31:27,4:27:1035:4:159:-5.36002,0,-84.1104 0/1:19:16,3:16:629:3:122:-5.65292,0,-51.2227 dDocent_Contig_6966 12 . A G 60.9411 . 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AB=0.753535;ABP=279.384;AC=6;AF=1;AN=6;AO=373;CIGAR=1X2M;DP=495;DPB=495;DPRA=0;EPP=812.97;EPPR=85.5263;GTI=0;LEN=1;MEANALT=3.66667;MQM=54.4021;MQMR=60;NS=3;NUMALT=2;ODDS=0;PAIRED=0.959786;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=14208;QR=1444;RO=38;RPL=0;RPP=812.97;RPPR=85.5263;RPR=373;RUN=1;SAF=373;SAP=812.97;SAR=0;SRF=38;SRP=85.5263;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 1|1:242:15,46,174:15:576:46,174:1755,6607:-627.131,-487.665,-521.102,-96.6991,0,-91.6045 1|1:163:13,13,134:13:492:13,134:502,5121:-412.147,-374.83,-411.25,-0.902049,0,-0.896527 1|1:90:10,14,65:10:376:14,65:533,2480:-211.992,-171.282,-197.872,-12.9206,0,-24.1581 dDocent_Contig_6969 41 . C T 188.513 . AB=0.166667;ABP=89.8692;AC=2;AF=0.333333;AN=6;AO=15;CIGAR=1X;DP=101;DPB=101;DPRA=4.09091;EPP=27.4756;EPPR=189.757;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=542;QR=3410;RO=86;RPL=1;RPP=27.4756;RPPR=189.757;RPR=14;RUN=1;SAF=15;SAP=35.5824;SAR=0;SRF=86;SRP=189.757;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:75:64,11:64:2523:11:401:-13.8538,0,-204.625 0/0:11:11,0:11:441:0:0:0,-3.31133,-40.0428 0/1:15:11,4:11:446:4:141:-8.52033,0,-35.9807 dDocent_Contig_6971 32 . T G 1123.5 . AB=0.280488;ABP=71.65;AC=3;AF=0.5;AN=6;AO=46;CIGAR=1X;DP=164;DPB=164;DPRA=0;EPP=102.898;EPPR=259.244;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=1847;QR=4734;RO=118;RPL=0;RPP=102.898;RPPR=259.244;RPR=46;RUN=1;SAF=46;SAP=102.898;SAR=0;SRF=118;SRP=259.244;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:103:80,23:80:3216:23:918:-51.9182,0,-258.493 0/1:21:7,14:7:283:14:566:-44.9609,0,-19.5209 0/1:40:31,9:31:1235:9:363:-20.9935,0,-99.376 dDocent_Contig_6972 10 . G A 1853.67 . AB=0.0869565;ABP=71.1757;AC=3;AF=0.5;AN=6;AO=4;CIGAR=2X6M1X;DP=137;DPB=137;DPRA=0;EPP=11.6962;EPPR=39.9253;GTI=0;LEN=1;MEANALT=7;MQM=60;MQMR=60;NS=3;NUMALT=7;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=155;QR=648;RO=17;RPL=0;RPP=11.6962;RPPR=39.9253;RPR=4;RUN=1;SAF=4;SAP=11.6962;SAR=0;SRF=17;SRP=39.9253;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 1|0:63:5,1,2,10,3,31,0,11:5:195:1,2,10,3,31,0,11:40,78,376,100,1227,0,413:-117.29,-115.5,-131.229,-112.384,-125.118,-127.811,-87.9933,-100.727,-97.6108,-101.012,-110.706,-123.44,-120.324,-95.9337,-125.832,-17.7959,-30.5317,-27.4149,-3.02324,-25.7398,-24.4956,-118.796,-131.53,-128.413,-104.023,-126.735,-33.8276,-134.825,-84.9702,-97.7041,-94.5876,-70.1981,-92.9106,0,-100.999,-97.6881 0|1:46:11,7,2,8,1,9,4,4:11:414:7,2,8,1,9,4,4:273,71,296,40,355,155,151:-25.9017,-6.77523,-38.589,-23.4297,-34.9126,-56.7479,-5.00222,-16.4841,-33.1381,-36.5133,-25.9174,-37.4006,-54.0545,-35.626,-59.5373,0,-11.4828,-28.1379,-9.70922,-30.6259,-31.2123,-16.4784,-27.9614,-44.6155,-26.1872,-47.1037,-21.1865,-49.1951,-16.8377,-28.3205,-44.9745,-26.5463,-47.4626,-21.5457,-38.0236,-49.554 0|1:28:1,0,5,11,4,4,0,3:1:39:0,5,11,4,4,0,3:0,195,428,155,155,0,117:-47.6975,-47.9985,-51.2044,-31.9689,-35.1748,-33.6696,-12.8239,-16.0299,0,-12.7185,-35.2646,-38.4705,-22.4409,-3.29614,-37.2664,-35.2648,-38.4707,-22.4411,-3.2963,-25.7369,-37.2666,-47.9985,-51.2044,-35.1748,-16.0299,-38.4705,-38.4707,-51.2044,-38.3807,-41.5867,-25.557,-6.41199,-28.8528,-28.8529,-41.5867,-40.6836 dDocent_Contig_6973 107 . N A 66.4848 . AB=0;ABP=0;AC=2;AF=1;AN=2;AO=2;CIGAR=1X;DP=2;DPB=2;DPRA=0;EPP=7.35324;EPPR=0;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=0;NS=1;NUMALT=1;ODDS=5.99146;PAIRED=1;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=70;QR=0;RO=0;RPL=0;RPP=7.35324;RPPR=0;RPR=2;RUN=1;SAF=0;SAP=7.35324;SAR=2;SRF=0;SRP=0;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 1/1:2:0,2:0:0:2:70:-6.6474,-0.60206,0 ./.:.:.:.:.:.:.:. ./.:.:.:.:.:.:.:. dDocent_Contig_6974 136 . T C 695.804 . AB=0.177083;ABP=89.9597;AC=4;AF=0.666667;AN=6;AO=17;CIGAR=4X2M1X5M1X2M1X2M1X;DP=96;DPB=96;DPRA=0;EPP=39.9253;EPPR=39.9253;GTI=0;LEN=1;MEANALT=7.66667;MQM=24.5882;MQMR=60;NS=3;NUMALT=9;ODDS=0;PAIRED=0;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=418;QR=642;RO=17;RPL=0;RPP=39.9253;RPPR=39.9253;RPR=17;RUN=1;SAF=17;SAP=39.9253;SAR=0;SRF=0;SRP=39.9253;SRR=17;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|1:38:9,2,4,0,4,4,1,1,4,4:9:341:2,4,0,4,4,1,1,4,4:77,156,0,107,151,29,40,84,100:-10.1306,-6.51026,-33.8919,0,-21.6598,-26.7834,-12.8398,-34.4939,-27.9875,-40.8205,-4.46888,-26.1244,-19.6176,-32.4512,-31.2471,-0.498539,-22.1579,-15.6502,-28.4855,-20.1158,-27.2814,-10.8025,-32.4569,-25.9505,-38.7836,-30.4145,-26.4485,-38.4825,-10.2407,-31.8956,-25.389,-38.2223,-29.8531,-25.887,-36.1854,-37.9213,-7.56505,-29.2176,-22.7115,-35.5437,-27.1771,-23.2097,-33.5074,-32.9459,-34.3396,-6.13602,-27.7899,-21.2835,-34.1164,-25.7491,-21.7817,-32.0799,-31.5184,-28.843,-32.9123 1|1:27:0,0,8,2,0,0,1,0,9,7:0:0:0,8,2,0,0,1,0,9,7:0,308,38,0,0,38,0,197,168:-37.9133,-37.9133,-37.9133,-12.5861,-12.5861,-10.1778,-35.64,-35.64,-10.31,-35.0379,-37.9133,-37.9133,-12.5861,-35.64,-37.9133,-37.9133,-37.9133,-12.5861,-35.64,-37.9133,-37.9133,-35.0617,-35.0617,-9.72977,-32.7883,-35.0617,-35.0617,-34.7606,-37.9133,-37.9133,-12.5861,-35.64,-37.9133,-37.9133,-35.0617,-37.9133,-25.349,-25.349,0,-23.0842,-25.349,-25.349,-22.4974,-25.349,-22.6398,-26.8064,-26.8064,-1.45836,-24.5378,-26.8064,-26.8064,-23.9542,-26.8064,-14.2767,-24.6992 0|1:31:8,0,10,1,0,0,2,2,2,6:8:301:0,10,1,0,0,2,2,2,6:0,361,16,0,0,76,80,36,150:-27.0112,-29.4194,-54.105,0,-24.7162,-21.7059,-28.5537,-53.2381,-23.8512,-52.937,-29.4194,-54.105,-24.7162,-53.2381,-54.105,-29.4194,-54.105,-24.7162,-53.2381,-54.105,-54.105,-23.7177,-48.4063,-19.0138,-47.5397,-48.4063,-48.4063,-47.8042,-24.2207,-48.9086,-19.5171,-48.0421,-48.9086,-48.9086,-43.2096,-48.3065,-27.3305,-52.0139,-22.6286,-51.1478,-52.0139,-52.0139,-46.3158,-46.8182,-51.4118,-19.3725,-44.0553,-14.6724,-43.1909,-44.0553,-44.0553,-38.3579,-38.8607,-41.9691,-42.2491 dDocent_Contig_6975 31 . G A 33.2393 . AB=0;ABP=0;AC=2;AF=0.333333;AN=6;AO=3;CIGAR=5M1I1X;DP=29;DPB=30;DPRA=0.466667;EPP=9.52472;EPPR=57.2971;GTI=0;LEN=1;MEANALT=1.5;MQM=15;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=37;PRO=1;QA=117;QR=993;RO=25;RPL=0;RPP=9.52472;RPPR=57.2971;RPR=3;RUN=1;SAF=3;SAP=9.52472;SAR=0;SRF=25;SRP=57.2971;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 1|1:2:0,2:0:0:2:77:-2.84623,-0.60206,0 0|0:15:15,0:15:598:0:0:0,-4.51545,-54.0699 0|0:12:10,1:10:395:1:40:0,-2.0749,-34.2942 dDocent_Contig_6976 1 . N G 71.1443 . AB=0;ABP=0;AC=2;AF=1;AN=2;AO=4;CIGAR=1X;DP=4;DPB=4;DPRA=0;EPP=11.6962;EPPR=0;GTI=0;LEN=1;MEANALT=1;MQM=20;MQMR=0;NS=1;NUMALT=1;ODDS=7.37776;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=121;QR=0;RO=0;RPL=0;RPP=11.6962;RPPR=0;RPR=4;RUN=1;SAF=0;SAP=11.6962;SAR=4;SRF=0;SRP=0;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 1/1:4:0,4:0:0:4:121:-7.11416,-1.20412,0 ./.:.:.:.:.:.:.:. ./.:.:.:.:.:.:.:. dDocent_Contig_6978 100 . N A 663.078 . AB=0.333333;ABP=4.45795;AC=6;AF=1;AN=6;AO=2;CIGAR=1X1M6X4I5X;DP=24;DPB=31.9231;DPRA=1;EPP=7.35324;EPPR=0;GTI=0;LEN=1;MEANALT=2;MQM=24;MQMR=0;NS=3;NUMALT=3;ODDS=0;PAIRED=0;PAIREDR=0;PAO=7;PQA=286;PQR=0;PRO=0;QA=77;QR=0;RO=0;RPL=0;RPP=7.35324;RPPR=0;RPR=2;RUN=1;SAF=2;SAP=7.35324;SAR=0;SRF=0;SRP=0;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 1|1:6:0,4,0,2:0:0:4,0,2:106,0,77:-11.3333,-3.60798,-2.40386,-11.3333,-3.60798,-11.3333,-7.65818,0,-7.65818,-7.05612 1|1:6:0,6,0,0:0:0:6,0,0:229,0,0:-20.624,-1.80618,0,-20.624,-1.80618,-20.624,-20.624,-1.80618,-20.624,-20.624 1|1:12:0,8,4,0:0:0:8,4,0:307,154,0:-37.8196,-12.6231,-10.2149,-25.1784,0,-23.9742,-37.8196,-12.6231,-25.1784,-37.8196 dDocent_Contig_6979 173 . T G 39.4991 . AB=0.4;ABP=3.44459;AC=1;AF=0.166667;AN=6;AO=2;CIGAR=1M1I4M1X2M;DP=18;DPB=18.25;DPRA=0.769231;EPP=3.0103;EPPR=37.7539;GTI=0;LEN=1;MEANALT=1;MQM=40;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=0;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=79;QR=610;RO=16;RPL=0;RPP=7.35324;RPPR=37.7539;RPR=2;RUN=1;SAF=1;SAP=3.0103;SAR=1;SRF=0;SRP=37.7539;SRR=16;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|1:5:3,2:3:118:2:79:-5.47271,0,-9.49774 0|0:6:6,0:6:215:0:0:0,-1.80618,-19.6955 0|0:7:7,0:7:277:0:0:0,-2.10721,-25.2998 dDocent_Contig_6980 169 . A G 44.577 . AB=0.461538;ABP=3.34437;AC=2;AF=0.333333;AN=6;AO=13;CIGAR=1X;DP=38;DPB=38;DPRA=0;EPP=23.2217;EPPR=57.2971;GTI=0;LEN=1;MEANALT=1;MQM=16.7692;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=0.307692;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=510;QR=971;RO=25;RPL=11;RPP=16.5402;RPPR=57.2971;RPR=2;RUN=1;SAF=1;SAP=23.2217;SAR=12;SRF=0;SRP=57.2971;SRR=25;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:12:11,1:11:436:1:41:0,-3.01246,-38.9918 0/1:9:5,4:5:191:4:147:-2.64382,0,-14.8452 0/1:17:9,8:9:344:8:322:-5.30499,0,-26.1881 dDocent_Contig_6981 106 . N C 159.27 . AB=0;ABP=0;AC=2;AF=1;AN=2;AO=10;CIGAR=2X;DP=10;DPB=10;DPRA=0;EPP=24.725;EPPR=0;GTI=0;LEN=1;MEANALT=1;MQM=17.6;MQMR=0;NS=1;NUMALT=1;ODDS=11.5366;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=348;QR=0;RO=0;RPL=0;RPP=24.725;RPPR=0;RPR=10;RUN=1;SAF=0;SAP=24.725;SAR=10;SRF=0;SRP=0;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL .:.:.:.:.:.:.:. 1|1:10:0,10:0:0:10:348:-15.927,-3.0103,0 .:.:.:.:.:.:.:. dDocent_Contig_6982 131 . A C 61.4504 . AB=0.434783;ABP=4.70971;AC=2;AF=0.333333;AN=6;AO=22;CIGAR=1X;DP=56;DPB=56;DPRA=0;EPP=50.7827;EPPR=68.4099;GTI=0;LEN=1;MEANALT=1;MQM=12.8182;MQMR=53.4412;NS=3;NUMALT=1;ODDS=3.46945e-18;PAIRED=0.863636;PAIREDR=0.852941;PAO=0;PQA=0;PQR=0;PRO=0;QA=760;QR=1195;RO=34;RPL=0;RPP=50.7827;RPPR=76.8404;RPR=22;RUN=1;SAF=0;SAP=50.7827;SAR=22;SRF=1;SRP=68.4099;SRR=33;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:30:20,10:20:701:10:348:-2.05036,0,-50.7491 0/0:10:8,2:8:284:2:70:0,-0.734165,-23.6275 0/1:16:6,10:6:210:10:342:-7.50447,0,-9.27606 dDocent_Contig_6983 8 . T A 192.269 . AB=0.294118;ABP=9.26925;AC=3;AF=0.5;AN=6;AO=5;CIGAR=1X1M;DP=34;DPB=34;DPRA=0;EPP=13.8677;EPPR=46.4397;GTI=0;LEN=1;MEANALT=2;MQM=60;MQMR=60;NS=3;NUMALT=2;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=192;QR=778;RO=20;RPL=0;RPP=13.8677;RPPR=46.4397;RPR=5;RUN=1;SAF=5;SAP=13.8677;SAR=0;SRF=20;SRP=46.4397;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|1:17:7,5,5:7:271:5,5:194,192:-13.8348,0,-20.759,-0.182836,-6.50424,-20.9395 0|1:11:10,1,0:10:390:1,0:37,0:-0.386499,0,-32.1474,-3.3968,-32.4484,-35.4736 0|1:6:3,3,0:3:117:3,0:114,0:-8.82617,0,-9.1042,-9.72926,-10.0073,-19.3519 dDocent_Contig_6984 17 . T C 140.1 . AB=0.208333;ABP=20.744;AC=1;AF=0.166667;AN=6;AO=5;CIGAR=1X3M1X1M1X2M1X2M1X;DP=41;DPB=41;DPRA=0;EPP=13.8677;EPPR=57.2971;GTI=0;LEN=1;MEANALT=4;MQM=60;MQMR=60;NS=3;NUMALT=2;ODDS=6.93889e-18;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=198;QR=961;RO=25;RPL=0;RPP=13.8677;RPPR=57.2971;RPR=5;RUN=1;SAF=5;SAP=13.8677;SAR=0;SRF=25;SRP=57.2971;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|1:24:12,5,5:12:467:5,5:198,196:-12.7204,0,-36.9244,-0.73414,-22.8481,-37.6513 0|0:8:6,0,2:6:224:0,2:0,78:-4.77506,-6.58124,-24.9157,0,-18.7113,-18.1092 0|0:9:7,0,1:7:270:0,1:0,38:-0.923137,-3.03035,-25.2135,0,-22.1836,-21.8826 dDocent_Contig_6985 109 . G T 144.049 . AB=0.181818;ABP=32.0291;AC=2;AF=0.333333;AN=6;AO=6;CIGAR=1X3M1X1M1X;DP=33;DPB=33;DPRA=0;EPP=16.0391;EPPR=46.4397;GTI=0;LEN=1;MEANALT=1.66667;MQM=60;MQMR=60;NS=3;NUMALT=2;ODDS=0;PAIRED=0;PAIREDR=0.85;PAO=0;PQA=0;PQR=0;PRO=0;QA=201;QR=668;RO=20;RPL=0;RPP=16.0391;RPPR=46.4397;RPR=6;RUN=1;SAF=0;SAP=16.0391;SAR=6;SRF=0;SRP=46.4397;SRR=20;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|0:15:7,2,6:7:233:2,6:68,185:-12.7081,-9.29149,-27.5592,0,-13.3335,-17.0449 0|1:13:11,2,0:11:366:2,0:69,0:-2.63927,0,-29.3499,-5.9506,-29.952,-35.5596 0|1:5:2,2,0:2:69:2,0:64,0:-4.54785,0,-5.01364,-5.14991,-5.6157,-10.7643 dDocent_Contig_6987 107 . N A 55.6306 . AB=0;ABP=0;AC=2;AF=1;AN=2;AO=3;CIGAR=1X;DP=3;DPB=3;DPRA=0;EPP=9.52472;EPPR=0;GTI=0;LEN=1;MEANALT=1;MQM=20;MQMR=0;NS=1;NUMALT=1;ODDS=6.68461;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=105;QR=0;RO=0;RPL=0;RPP=9.52472;RPPR=0;RPR=3;RUN=1;SAF=0;SAP=9.52472;SAR=3;SRF=0;SRP=0;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 1/1:3:0,3:0:0:3:105:-5.56251,-0.90309,0 ./.:.:.:.:.:.:.:. ./.:.:.:.:.:.:.:. dDocent_Contig_6988 34 . T C 57.7823 . AB=0.146341;ABP=47.552;AC=2;AF=0.333333;AN=6;AO=8;CIGAR=1X;DP=67;DPB=67;DPRA=0;EPP=20.3821;EPPR=131.127;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=314;QR=2327;RO=59;RPL=0;RPP=20.3821;RPPR=131.127;RPR=8;RUN=1;SAF=8;SAP=20.3821;SAR=0;SRF=59;SRP=131.127;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:26:23,3:23:880:3:119:-3.26823,0,-71.6702 0/1:15:12,3:12:488:3:113:-6.02385,0,-39.756 0/0:26:24,2:24:959:2:82:0,-0.0471021,-78.8289 dDocent_Contig_6990 20 . T C 16247.6 . AB=0.889286;ABP=740.132;AC=3;AF=0.5;AN=6;AO=498;CIGAR=1X;DP=560;DPB=560;DPRA=0;EPP=1084.4;EPPR=137.642;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=19997;QR=2480;RO=62;RPL=0;RPP=1084.4;RPPR=137.642;RPR=498;RUN=1;SAF=498;SAP=1084.4;SAR=0;SRF=62;SRP=137.642;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:361:38,323:38:1511:323:12953:-1056.11,0,-27.5551 0/1:52:5,47:5:195:47:1881:-153.832,0,-2.2677 0/1:147:19,128:19:774:128:5163:-420.268,0,-25.7273 dDocent_Contig_6991 42 . T C 264.186 . AB=0.26087;ABP=25.858;AC=3;AF=0.5;AN=6;AO=12;CIGAR=1X;DP=46;DPB=46;DPRA=0;EPP=29.068;EPPR=76.8404;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=0.970588;PAO=0;PQA=0;PQR=0;PRO=0;QA=479;QR=1348;RO=34;RPL=0;RPP=29.068;RPPR=76.8404;RPR=12;RUN=1;SAF=12;SAP=29.068;SAR=0;SRF=34;SRP=76.8404;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:21:16,5:16:639:5:204:-12.4224,0,-51.5228 0/1:13:7,6:7:278:6:234:-17.5147,0,-21.4765 0/1:12:11,1:11:431:1:41:-0.482207,0,-35.5303 dDocent_Contig_6993 8 . T C 294.201 . AB=0.295455;ABP=19.0002;AC=2;AF=0.333333;AN=6;AO=13;CIGAR=1X;DP=49;DPB=49;DPRA=4.4;EPP=31.2394;EPPR=81.1833;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=505;QR=1372;RO=36;RPL=0;RPP=31.2394;RPPR=81.1833;RPR=13;RUN=1;SAF=13;SAP=31.2394;SAR=0;SRF=36;SRP=81.1833;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:31:21,10:21:813:10:388:-25.946,0,-64.1634 0/1:13:10,3:10:369:3:117:-6.99699,0,-29.64 0/0:5:5,0:5:190:0:0:0,-1.50515,-17.4667 dDocent_Contig_6994 14 . C A 124.024 . AB=0.210526;ABP=30.668;AC=2;AF=0.333333;AN=6;AO=8;CIGAR=1X;DP=40;DPB=40;DPRA=9.5;EPP=20.3821;EPPR=72.4974;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=0.96875;PAO=0;PQA=0;PQR=0;PRO=0;QA=296;QR=1289;RO=32;RPL=0;RPP=20.3821;RPPR=72.4974;RPR=8;RUN=1;SAF=8;SAP=20.3821;SAR=0;SRF=32;SRP=72.4974;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:29:25,4:25:1008:4:148:-4.9521,0,-82.2851 0/1:9:5,4:5:200:4:148:-10.9727,0,-15.6706 0/0:2:2,0:2:81:0:0:0,-0.60206,-7.68573 dDocent_Contig_6995 1 . N C 315.652 . AB=0;ABP=0;AC=2;AF=1;AN=2;AO=10;CIGAR=1X;DP=10;DPB=10;DPRA=0;EPP=24.725;EPPR=0;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=0;NS=1;NUMALT=1;ODDS=11.5366;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=347;QR=0;RO=0;RPL=0;RPP=24.725;RPPR=0;RPR=10;RUN=1;SAF=0;SAP=24.725;SAR=10;SRF=0;SRP=0;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 1/1:10:0,10:0:0:10:347:-31.5652,-3.0103,0 ./.:.:.:.:.:.:.:. ./.:.:.:.:.:.:.:. dDocent_Contig_6996 34 . T C 39.6178 . AB=0.333333;ABP=4.45795;AC=1;AF=0.166667;AN=6;AO=3;CIGAR=1X;DP=60;DPB=60;DPRA=0.357143;EPP=9.52472;EPPR=126.784;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=121;QR=2108;RO=57;RPL=0;RPP=9.52472;RPPR=126.784;RPR=3;RUN=1;SAF=3;SAP=9.52472;SAR=0;SRF=57;SRP=126.784;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:35:35,0:35:1314:0:0:0,-10.536,-118.547 0/1:6:4,2:4:121:2:80:-5.78561,0,-9.38163 0/0:19:18,1:18:673:1:41:0,-1.625,-56.8044 dDocent_Contig_6997 43 . G A 84.2806 . AB=0.185185;ABP=26.2531;AC=1;AF=0.166667;AN=6;AO=6;CIGAR=1X;DP=77;DPB=77;DPRA=38;EPP=16.0391;EPPR=157.185;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=1.73472e-18;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=237;QR=2790;RO=71;RPL=0;RPP=16.0391;RPPR=157.185;RPR=6;RUN=1;SAF=6;SAP=16.0391;SAR=0;SRF=71;SRP=157.185;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:49:48,1:48:1889:1:37:0,-11.0526,-166.525 0/0:1:1,0:1:39:0:0:0,-0.30103,-3.89656 0/1:27:22,5:22:862:5:200:-10.2512,0,-69.7609 dDocent_Contig_6998 18 . C A 646.751 . AB=0.589744;ABP=5.73856;AC=3;AF=0.5;AN=6;AO=23;CIGAR=1X;DP=39;DPB=39;DPRA=0;EPP=52.9542;EPPR=37.7539;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=3.46945e-18;PAIRED=0.956522;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=898;QR=647;RO=16;RPL=0;RPP=52.9542;RPPR=37.7539;RPR=23;RUN=1;SAF=23;SAP=52.9542;SAR=0;SRF=16;SRP=37.7539;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:20:9,11:9:369:11:433:-33.3041,0,-27.5549 0/1:4:1,3:1:41:3:123:-10.2607,0,-2.89045 0/1:15:6,9:6:237:9:342:-26.615,0,-17.187 dDocent_Contig_6999 52 . C A 59.9191 . AB=0.272727;ABP=7.94546;AC=1;AF=0.25;AN=4;AO=3;CIGAR=1X;DP=19;DPB=19;DPRA=1.375;EPP=9.52472;EPPR=37.7539;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=2;NUMALT=1;ODDS=0;PAIRED=0;PAIREDR=0.8125;PAO=0;PQA=0;PQR=0;PRO=0;QA=118;QR=648;RO=16;RPL=3;RPP=9.52472;RPPR=37.7539;RPR=0;RUN=1;SAF=3;SAP=9.52472;SAR=0;SRF=16;SRP=37.7539;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:11:8,3:8:326:3:118:-7.69087,0,-26.3985 ./.:.:.:.:.:.:.:. 0/0:8:8,0:8:322:0:0:0,-2.40824,-29.3483 dDocent_Contig_7000 29 . A G 989.17 . AB=0.0815217;ABP=282.894;AC=0;AF=0;AN=6;AO=15;CIGAR=3M3X3M1X2M1X;DP=230;DPB=229.462;DPRA=0;EPP=35.5824;EPPR=102.898;GTI=0;LEN=1;MEANALT=20.5;MQM=53.0667;MQMR=60;NS=3;NUMALT=9;ODDS=0;PAIRED=0.466667;PAIREDR=0.5;PAO=0;PQA=0;PQR=0;PRO=0;QA=594;QR=1821;RO=46;RPL=0;RPP=35.5824;RPPR=102.898;RPR=15;RUN=1;SAF=15;SAP=35.5824;SAR=0;SRF=46;SRP=102.898;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|0:124:24,20,0,4,3,0,0,5,11,6:24:959:20,0,4,3,0,0,5,11,6:774,0,158,121,0,0,200,437,241:-56.3394,0,-72.9749,-63.5641,-78.9955,-142.559,-50.5618,-65.9934,-129.557,-128.353,-53.5894,-69.0209,-132.585,-119.582,-131.681,-63.5641,-78.9955,-142.559,-129.557,-132.585,-142.559,-63.5641,-78.9955,-142.559,-129.557,-132.585,-142.559,-142.559,-47.0886,-62.5201,-126.084,-113.082,-116.109,-126.084,-126.084,-124.579,-27.9311,-43.3629,-106.927,-93.9244,-96.9519,-106.927,-106.927,-90.4512,-103.615,-44.1034,-59.535,-123.099,-110.096,-113.124,-123.099,-123.099,-106.623,-87.466,-121.292 0|0:46:10,4,4,0,4,4,4,4,0,4:10:389:4,4,0,4,4,4,4,0,4:161,158,0,157,136,157,159,0,162:-10.3501,-0.0893083,-30.8537,-0.492647,-19.1901,-31.2567,-13.3604,-32.0578,-32.4608,-45.3284,-0.448009,-19.1455,-19.5486,-32.4162,-31.2121,-2.97255,-21.6686,-22.0718,-34.9387,-22.0271,-33.7346,-1.13198,-19.8291,-20.2322,-33.0996,-20.1876,-22.7107,-31.8955,-0.268498,-18.9661,-19.3692,-32.2369,-19.3246,-21.8477,-20.0082,-31.0327,-13.3604,-32.0578,-32.4608,-45.3284,-32.4162,-34.9387,-33.0996,-32.2369,-45.3284,0,-18.6977,-19.1008,-31.9686,-19.0562,-21.5794,-19.7398,-18.8768,-31.9686,-30.7645 0|0:60:12,13,0,5,2,1,0,6,4,4:12:473:13,0,5,2,1,0,6,4,4:501,0,192,80,40,0,239,157,156:-37.5195,0,-35.0034,-41.1318,-38.9168,-80.0485,-25.3717,-23.1569,-64.2884,-62.7833,-34.5411,-32.3262,-73.458,-57.6979,-72.856,-37.9639,-35.7489,-76.8806,-61.1205,-70.2901,-76.5796,-41.1318,-38.9168,-80.0485,-64.2884,-73.458,-76.8806,-80.0485,-21.5279,-19.3132,-60.445,-44.6849,-53.8544,-57.2771,-60.445,-58.6389,-28.3764,-26.1616,-67.2932,-51.5331,-60.7026,-64.1253,-67.2932,-47.6896,-66.0891,-28.3099,-26.0951,-67.2267,-51.4666,-60.6362,-64.0588,-67.2267,-47.6232,-54.4714,-66.0226 dDocent_Contig_7001 101 . N T 144.176 . AB=0;ABP=0;AC=2;AF=1;AN=2;AO=4;CIGAR=2X6I5X2I2X;DP=4;DPB=7.55556;DPRA=0;EPP=11.6962;EPPR=0;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=0;NS=1;NUMALT=1;ODDS=7.37776;PAIRED=1;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=156;QR=0;RO=0;RPL=0;RPP=11.6962;RPPR=0;RPR=4;RUN=1;SAF=4;SAP=11.6962;SAR=0;SRF=0;SRP=0;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 1|1:4:0,4:0:0:4:156:-14.4173,-1.20412,0 .:.:.:.:.:.:.:. .:.:.:.:.:.:.:. dDocent_Contig_7002 70 . A T 693.343 . AB=0.278261;ABP=52.1233;AC=3;AF=0.5;AN=6;AO=32;CIGAR=1X;DP=115;DPB=115;DPRA=0;EPP=72.4974;EPPR=183.243;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=6.93889e-18;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=1205;QR=3094;RO=83;RPL=32;RPP=72.4974;RPPR=183.243;RPR=0;RUN=1;SAF=32;SAP=72.4974;SAR=0;SRF=83;SRP=183.243;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:84:60,24:60:2242:24:923:-58.0926,0,-176.693 0/1:6:4,2:4:143:2:78:-5.59712,0,-11.4105 0/1:25:19,6:19:709:6:204:-11.1675,0,-56.6148 dDocent_Contig_7003 107 . N A 72.0632 . AB=0;ABP=0;AC=2;AF=1;AN=2;AO=3;CIGAR=1X;DP=3;DPB=3;DPRA=0;EPP=9.52472;EPPR=0;GTI=0;LEN=1;MEANALT=1;MQM=38;MQMR=0;NS=1;NUMALT=1;ODDS=6.68461;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=78;QR=0;RO=0;RPL=0;RPP=9.52472;RPPR=0;RPR=3;RUN=1;SAF=0;SAP=9.52472;SAR=3;SRF=0;SRP=0;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL ./.:.:.:.:.:.:.:. 1/1:3:0,3:0:0:3:78:-7.20578,-0.90309,0 ./.:.:.:.:.:.:.:. dDocent_Contig_7004 7 . T C 360.254 . AB=0.225;ABP=55.5599;AC=2;AF=0.333333;AN=6;AO=18;CIGAR=1X;DP=119;DPB=119;DPRA=1.02564;EPP=42.0968;EPPR=222.329;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=50.5149;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=0.821782;PAO=0;PQA=0;PQR=0;PRO=0;QA=699;QR=3870;RO=101;RPL=0;RPP=42.0968;RPPR=222.329;RPR=18;RUN=1;SAF=18;SAP=42.0968;SAR=0;SRF=101;SRP=222.329;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:39:39,0:39:1506:0:0:0,-11.7402,-113.59 0/1:30:25,5:25:958:5:193:-8.71046,0,-68.029 0/1:50:37,13:37:1406:13:506:-30.8378,0,-106.34 dDocent_Contig_7005 7 . T A 1129.95 . AB=0.217899;ABP=180.657;AC=3;AF=0.5;AN=6;AO=56;CIGAR=1X;DP=257;DPB=257;DPRA=0;EPP=124.613;EPPR=430.79;GTI=0;LEN=1;MEANALT=1.33333;MQM=59.2143;MQMR=59.9797;NS=3;NUMALT=1;ODDS=1.38778e-17;PAIRED=0.982143;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=2163;QR=7522;RO=197;RPL=0;RPP=124.613;RPPR=430.79;RPR=56;RUN=1;SAF=56;SAP=124.613;SAR=0;SRF=197;SRP=430.79;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:144:106,34:106:4055:34:1325:-76.4518,0,-322.509 0/1:38:33,5:33:1260:5:191:-6.11938,0,-102.248 0/1:75:58,17:58:2207:17:647:-35.9471,0,-176.278 dDocent_Contig_7006 71 . C G 563.028 . AB=0.355263;ABP=16.8392;AC=3;AF=0.5;AN=6;AO=27;CIGAR=1X;DP=76;DPB=76;DPRA=0;EPP=61.6401;EPPR=107.241;GTI=0;LEN=1;MEANALT=1.33333;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=928;QR=1686;RO=48;RPL=27;RPP=61.6401;RPPR=107.241;RPR=0;RUN=1;SAF=27;SAP=61.6401;SAR=0;SRF=48;SRP=107.241;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:22:16,5:16:574:5:169:-9.10555,0,-45.5858 0/1:17:8,9:8:285:9:314:-23.48,0,-20.8771 0/1:37:24,13:24:827:13:445:-29.2401,0,-63.6088 dDocent_Contig_7007 13 . T C 276.329 . AB=0.276596;ABP=23.3852;AC=3;AF=0.5;AN=6;AO=13;CIGAR=1X;DP=47;DPB=47;DPRA=0;EPP=31.2394;EPPR=76.8404;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=0;PAIREDR=0.411765;PAO=0;PQA=0;PQR=0;PRO=0;QA=513;QR=1261;RO=34;RPL=0;RPP=31.2394;RPPR=76.8404;RPR=13;RUN=1;SAF=13;SAP=31.2394;SAR=0;SRF=34;SRP=76.8404;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:24:17,7:17:649:7:280:-18.3465,0,-51.5159 0/1:9:7,2:7:233:2:82:-5.07041,0,-18.5829 0/1:14:10,4:10:379:4:151:-9.73871,0,-30.2482 dDocent_Contig_7008 20 . G A 1208.8 . AB=0.132479;ABP=826.611;AC=3;AF=0.5;AN=6;AO=93;CIGAR=1X;DP=702;DPB=702;DPRA=0;EPP=204.957;EPPR=1094.85;GTI=0;LEN=1;MEANALT=1.33333;MQM=60;MQMR=59.8465;NS=3;NUMALT=1;ODDS=0;PAIRED=0.989247;PAIREDR=0.922442;PAO=0;PQA=0;PQR=0;PRO=0;QA=3738;QR=23964;RO=606;RPL=0;RPP=204.957;RPPR=1318.92;RPR=93;RUN=1;SAF=93;SAP=204.957;SAR=0;SRF=579;SRP=1094.85;SRR=27;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:342:292,47:292:11569:47:1887:-67.5755,0,-937.583 0/1:161:143,18:143:5608:18:727:-17.2895,0,-456.114 0/1:199:171,28:171:6787:28:1124:-41.5375,0,-550.61 dDocent_Contig_7009 53 . A C 1343.49 . 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AB=0.05;ABP=143.722;AC=2;AF=0.333333;AN=6;AO=4;CIGAR=1X1M;DP=114;DPB=114;DPRA=0;EPP=11.6962;EPPR=133.299;GTI=0;LEN=1;MEANALT=3;MQM=60;MQMR=59.3;NS=3;NUMALT=3;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=155;QR=2309;RO=60;RPL=0;RPP=11.6962;RPPR=133.299;RPR=4;RUN=1;SAF=4;SAP=11.6962;SAR=0;SRF=60;SRP=133.299;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|0:56:31,8,15,2:31:1210:8,15,2:310,598,77:-39.9204,-23.7906,-120.843,0,-74.0028,-94.9517,-42.9307,-116.929,-93.145,-141.791 0|1:24:19,2,1,2:19:701:2,1,2:80,41,78:-0.871917,0,-56.6917,-3.20444,-53.9079,-60.1996,-0.185014,-50.8803,-54.0873,-56.871 1|0:34:10,13,11,0:10:398:13,11,0:508,419,0:-40.573,-1.81299,-30.4435,-9.22343,0,-38.4511,-43.5833,-34.3569,-41.7624,-76.123 dDocent_Contig_7015 16 . G A 88.9394 . AB=0.112903;ABP=83.705;AC=2;AF=0.333333;AN=6;AO=8;CIGAR=1M1X2M6I2M1X3M1X2M;DP=88;DPB=85.2308;DPRA=0;EPP=20.3821;EPPR=50.7827;GTI=0;LEN=1;MEANALT=8.33333;MQM=26.125;MQMR=60;NS=3;NUMALT=3;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=209;QR=855;RO=22;RPL=0;RPP=20.3821;RPPR=50.7827;RPR=8;RUN=1;SAF=8;SAP=20.3821;SAR=0;SRF=22;SRP=50.7827;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|1:45:13,5,4,0:13:515:5,4,0:140,67,0:-5.83811,0,-40.9525,-5.98,-38.6907,-47.2262,-9.7515,-42.4577,-48.4303,-52.1989 1|0:17:0,2,0,2:0:0:2,0,2:56,0,38:-6.19135,-2.28276,-1.6807,-6.19135,-2.28276,-6.19135,-3.91041,0,-3.91041,-3.30835 0|0:26:9,1,3,0:9:340:1,3,0:13,35,0:0,-2.10488,-29.7476,-1.24928,-28.5942,-28.2922,-2.70927,-30.0486,-29.1953,-30.6513 dDocent_Contig_7016 7 . T A 185.712 . AB=0.166667;ABP=55.1256;AC=3;AF=0.500001;AN=6;AO=9;CIGAR=1X4M;DP=54;DPB=54;DPRA=0;EPP=22.5536;EPPR=85.5263;GTI=0;LEN=1;MEANALT=2.33333;MQM=60;MQMR=60;NS=3;NUMALT=3;ODDS=0;PAIRED=1;PAIREDR=0.973684;PAO=0;PQA=0;PQR=0;PRO=0;QA=347;QR=1452;RO=38;RPL=0;RPP=22.5536;RPPR=85.5263;RPR=9;RUN=1;SAF=9;SAP=22.5536;SAR=0;SRF=38;SRP=85.5263;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|1:25:20,1,3,1:20:760:1,3,1:39,117,39:-3.60051,-6.52184,-68.5388,0,-59.221,-61.4194,-6.41465,-65.6336,-59.1162,-68.434 0|1:14:9,2,0,2:9:343:2,0,2:77,0,76:-3.65107,0,-27.6035,-6.36034,-28.2056,-34.5318,-0.0928103,-21.9684,-28.2959,-27.6939 0|1:15:9,0,0,6:9:349:0,0,6:0,0,232:-16.7336,-19.4429,-48.1177,-19.4429,-48.1177,-48.1177,0,-29.0616,-29.0616,-27.2554 dDocent_Contig_7017 7 . T A 36.8025 . AB=0.128205;ABP=49.8362;AC=1;AF=0.166667;AN=6;AO=6;CIGAR=1X;DP=139;DPB=139;DPRA=0.537313;EPP=16.0391;EPPR=291.816;GTI=0;LEN=1;MEANALT=1;MQM=46.6667;MQMR=55.3684;NS=3;NUMALT=1;ODDS=0;PAIRED=0;PAIREDR=0.0977444;PAO=0;PQA=0;PQR=0;PRO=0;QA=231;QR=5108;RO=133;RPL=0;RPP=16.0391;RPPR=291.816;RPR=6;RUN=1;SAF=6;SAP=16.0391;SAR=0;SRF=133;SRP=291.816;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:67:67,0:67:2576:0:0:0,-20.169,-229.405 0/0:33:32,1:32:1219:1:38:0,-6.13672,-104.385 0/1:39:34,5:34:1313:5:193:-5.50406,0,-100.595 dDocent_Contig_7018 109 . A G 65.6105 . AB=0.2;ABP=22.5536;AC=1;AF=0.166667;AN=6;AO=7;CIGAR=1X;DP=72;DPB=72;DPRA=0.7;EPP=18.2106;EPPR=144.156;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=0;PAIREDR=0.461538;PAO=0;PQA=0;PQR=0;PRO=0;QA=222;QR=2118;RO=65;RPL=0;RPP=18.2106;RPPR=144.156;RPR=7;RUN=1;SAF=0;SAP=18.2106;SAR=7;SRF=0;SRP=144.156;SRR=65;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:30:30,0:30:1007:0:0:0,-9.0309,-90.9348 0/0:17:15,2:15:460:2:49:0,-0.463822,-37.0403 0/1:25:20,5:20:651:5:173:-8.38446,0,-51.3733 dDocent_Contig_7019 9 . G A 62592.9 . AB=0;ABP=0;AC=6;AF=1;AN=6;AO=1938;CIGAR=1M1X3M;DP=2215;DPB=2215;DPRA=0;EPP=4211.32;EPPR=200.614;GTI=0;LEN=1;MEANALT=8;MQM=58.2879;MQMR=57.0769;NS=3;NUMALT=2;ODDS=0;PAIRED=0.874097;PAIREDR=0.879121;PAO=0;PQA=0;PQR=0;PRO=0;QA=73302;QR=3547;RO=91;RPL=0;RPP=4211.32;RPPR=200.614;RPR=1938;RUN=1;SAF=1938;SAP=4211.32;SAR=0;SRF=91;SRP=200.614;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 1|1:1267:56,72,1095:56:2191:72,1095:2791,41562:-3530.53,-3321.67,-3477.41,-152.206,-103.904,0 1|1:234:4,9,212:4:158:9,212:350,7922:-698.072,-671.005,-678.409,-53.7126,-35.5266,0 1|1:714:31,16,631:31:1198:16,631:629,23818:-2030.22,-1988.77,-2079.28,-94.6308,-139.175,0 dDocent_Contig_7020 7 . T C 1029.11 . AB=0.491525;ABP=3.0471;AC=4;AF=0.666667;AN=6;AO=29;CIGAR=1X2M;DP=73;DPB=73;DPRA=0;EPP=65.983;EPPR=50.7827;GTI=0;LEN=1;MEANALT=2;MQM=39.8621;MQMR=60;NS=3;NUMALT=3;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=1121;QR=845;RO=22;RPL=0;RPP=65.983;RPPR=50.7827;RPR=29;RUN=1;SAF=29;SAP=65.983;SAR=0;SRF=22;SRP=50.7827;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|1:36:10,5,0,21:10:381:5,0,21:192,0,811:-58.7464,-46.5483,-76.3032,-61.7567,-77.8083,-93.0152,0,-16.0565,-31.2597,-24.938 1|1:14:1,6,7,0:1:39:6,7,0:224,270,0:-29.4764,-11.388,-12.803,-15.1181,0,-16.2192,-29.7775,-14.6092,-18.3264,-32.9886 0|1:23:11,4,0,8:11:425:4,0,8:150,0,310:-20.2105,-11.2308,-44.9487,-23.5219,-46.1528,-58.439,0,-22.6321,-34.9154,-32.5071 dDocent_Contig_7022 43 . G A 613.836 . AB=0.353846;ABP=15.0703;AC=1;AF=0.166667;AN=6;AO=24;CIGAR=1X;DP=100;DPB=100;DPRA=6.64286;EPP=55.1256;EPPR=168.042;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=954;QR=3001;RO=76;RPL=0;RPP=55.1256;RPPR=168.042;RPR=24;RUN=1;SAF=24;SAP=55.1256;SAR=0;SRF=76;SRP=168.042;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:65:42,23:42:1656:23:913:-62.9064,0,-129.698 0/0:7:7,0:7:269:0:0:0,-2.10721,-24.571 0/0:28:27,1:27:1076:1:41:0,-4.33427,-93.0344 dDocent_Contig_7023 40 . A G 189.184 . AB=0.307692;ABP=11.3621;AC=1;AF=0.25;AN=4;AO=8;CIGAR=1X;DP=34;DPB=34;DPRA=3.25;EPP=20.3821;EPPR=59.4686;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=2;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=312;QR=978;RO=26;RPL=0;RPP=20.3821;RPPR=59.4686;RPR=8;RUN=1;SAF=8;SAP=20.3821;SAR=0;SRF=26;SRP=59.4686;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:26:18,8:18:678:8:312:-20.6173,0,-53.5214 0/0:8:8,0:8:300:0:0:0,-2.40824,-27.3543 ./.:.:.:.:.:.:.:. dDocent_Contig_7025 16 . G T 211.498 . AB=0.125;ABP=51.8684;AC=1;AF=0.166667;AN=6;AO=5;CIGAR=1M2D3M1X;DP=43;DPB=39.5714;DPRA=6.66667;EPP=13.8677;EPPR=70.3259;GTI=0;LEN=1;MEANALT=1.5;MQM=60;MQMR=60;NS=3;NUMALT=2;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=198;QR=1233;RO=31;RPL=0;RPP=13.8677;RPPR=70.3259;RPR=5;RUN=1;SAF=5;SAP=13.8677;SAR=0;SRF=31;SRP=70.3259;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|1:25:21,4,0:21:837:4,0:158,0:-7.07473,0,-68.1217,-13.3964,-69.3258,-82.327 0|0:15:7,1,7:7:273:1,7:40,243:-17.5976,-16.4031,-38.5625,0,-19.1341,-20.3232 0|0:3:3,0,0:3:123:0,0:0,0:0,-0.90309,-11.4648,-0.90309,-11.4648,-11.4648 dDocent_Contig_7026 9 . G A 169.183 . AB=0.466667;ABP=3.15506;AC=2;AF=0.333333;AN=6;AO=8;CIGAR=1X;DP=24;DPB=24;DPRA=0;EPP=20.3821;EPPR=37.7539;GTI=0;LEN=1;MEANALT=1;MQM=55.125;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=0.875;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=306;QR=620;RO=16;RPL=0;RPP=20.3821;RPPR=37.7539;RPR=8;RUN=1;SAF=8;SAP=20.3821;SAR=0;SRF=16;SRP=37.7539;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:8:5,3:5:192:3:113:-8.13073,0,-15.2418 0/0:9:8,1:8:312:1:37:0,-0.61996,-26.3556 0/1:7:3,4:3:116:4:156:-12.3101,0,-8.71049 dDocent_Contig_7027 47 . T A 47.6322 . AB=0.193548;ABP=28.2974;AC=1;AF=0.166667;AN=6;AO=6;CIGAR=1X;DP=53;DPB=53;DPRA=2.81818;EPP=16.0391;EPPR=105.07;GTI=0;LEN=1;MEANALT=1;MQM=29.3333;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=0;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=240;QR=1884;RO=47;RPL=6;RPP=16.0391;RPPR=105.07;RPR=0;RUN=1;SAF=0;SAP=16.0391;SAR=6;SRF=47;SRP=105.07;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:20:20,0:20:799:0:0:0,-6.0206,-72.2268 0/0:2:2,0:2:81:0:0:0,-0.60206,-7.68573 0/1:31:25,6:25:1004:6:240:-6.58676,0,-81.3239 dDocent_Contig_7028 13 . G A 759.31 . AB=0.509434;ABP=3.05127;AC=3;AF=0.5;AN=6;AO=27;CIGAR=1X1M1X;DP=53;DPB=53;DPRA=0;EPP=61.6401;EPPR=55.1256;GTI=0;LEN=1;MEANALT=1.33333;MQM=60;MQMR=60;NS=3;NUMALT=2;ODDS=6.93889e-18;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=1066;QR=956;RO=24;RPL=0;RPP=61.6401;RPPR=55.1256;RPR=27;RUN=1;SAF=27;SAP=61.6401;SAR=0;SRF=24;SRP=55.1256;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|1:33:14,19,0:14:557:19,0:762,0:-58.9679,0,-40.5397,-63.1824,-46.2592,-109.043 0|1:10:8,2,0:8:318:2,0:80,0:-4.58149,0,-25.9766,-6.98973,-26.5787,-33.1693 1|0:10:2,6,2:2:81:6,2:224,82:-17.8007,-0.0939436,-4.96445,-11.6255,0,-17.7105 dDocent_Contig_7029 132 . G A 47.0618 . AB=0.2;ABP=18.6449;AC=2;AF=0.333333;AN=6;AO=4;CIGAR=1X;DP=21;DPB=21;DPRA=10;EPP=11.6962;EPPR=39.9253;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=150;QR=657;RO=17;RPL=0;RPP=11.6962;RPPR=39.9253;RPR=4;RUN=1;SAF=0;SAP=11.6962;SAR=4;SRF=0;SRP=39.9253;SRR=17;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:12:10,2:10:389:2:72:-3.22436,0,-31.756 0/0:1:1,0:1:34:0:0:0,-0.30103,-3.39891 0/1:8:6,2:6:234:2:78:-4.99523,0,-19.0229 dDocent_Contig_7030 53 . G C 506.086 . AB=0.156398;ABP=219.386;AC=2;AF=0.333333;AN=6;AO=33;CIGAR=1X;DP=215;DPB=215;DPRA=26.375;EPP=74.6689;EPPR=398.218;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=0.983516;PAO=0;PQA=0;PQR=0;PRO=0;QA=1300;QR=7011;RO=182;RPL=33;RPP=74.6689;RPPR=398.218;RPR=0;RUN=1;SAF=33;SAP=74.6689;SAR=0;SRF=182;SRP=398.218;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:168:142,26:142:5507:26:1030:-42.4104,0,-444.917 0/0:4:4,0:4:158:0:0:0,-1.20412,-14.6 0/1:43:36,7:36:1346:7:270:-11.721,0,-108.479 dDocent_Contig_7031 38 . A G 161.023 . AB=0.204545;ABP=36.372;AC=3;AF=0.5;AN=6;AO=9;CIGAR=1X;DP=44;DPB=44;DPRA=0;EPP=22.5536;EPPR=79.0118;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=364;QR=1372;RO=35;RPL=0;RPP=22.5536;RPPR=79.0118;RPR=9;RUN=1;SAF=9;SAP=22.5536;SAR=0;SRF=35;SRP=79.0118;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:24:19,5:19:763:5:201:-11.2458,0,-61.7687 0/1:10:7,3:7:266:3:122:-8.36219,0,-21.2884 0/1:10:9,1:9:343:1:41:-1.08427,0,-28.2135 dDocent_Contig_7032 12 . G T 858.171 . AB=0.367816;ABP=16.2139;AC=3;AF=0.5;AN=6;AO=32;CIGAR=1X;DP=87;DPB=87;DPRA=0;EPP=72.4974;EPPR=122.441;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=1294;QR=2208;RO=55;RPL=0;RPP=72.4974;RPPR=122.441;RPR=32;RUN=1;SAF=32;SAP=72.4974;SAR=0;SRF=55;SRP=122.441;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:56:39,17:39:1567:17:688:-45.3908,0,-124.406 0/1:10:4,6:4:159:6:243:-19.2377,0,-11.6811 0/1:21:12,9:12:482:9:363:-26.7115,0,-37.408 dDocent_Contig_7033 34 . C T 830.86 . AB=0.242038;ABP=93.7557;AC=3;AF=0.5;AN=6;AO=38;CIGAR=1X;DP=157;DPB=157;DPRA=0;EPP=85.5263;EPPR=261.416;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=0.763158;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=1498;QR=4634;RO=119;RPL=0;RPP=85.5263;RPPR=261.416;RPR=38;RUN=1;SAF=38;SAP=85.5263;SAR=0;SRF=119;SRP=261.416;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:90:69,21:69:2705:21:827:-47.6559,0,-216.493 0/1:14:8,6:8:313:6:243:-18.0338,0,-24.3189 0/1:53:42,11:42:1616:11:428:-22.9192,0,-129.723 dDocent_Contig_7036 10 . C G 686.64 . AB=0.520833;ABP=3.19126;AC=3;AF=0.5;AN=6;AO=25;CIGAR=1X;DP=48;DPB=48;DPRA=0;EPP=57.2971;EPPR=52.9542;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=973;QR=928;RO=23;RPL=0;RPP=57.2971;RPPR=52.9542;RPR=25;RUN=1;SAF=25;SAP=57.2971;SAR=0;SRF=23;SRP=52.9542;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:13:9,4:9:363:4:148:-9.76678,0,-29.1213 0/1:17:5,12:5:203:12:472:-37.7101,0,-13.5355 0/1:18:9,9:9:362:9:353:-26.7099,0,-27.5254 dDocent_Contig_7037 43 . G A 115.943 . AB=0.222222;ABP=21.1059;AC=1;AF=0.166667;AN=6;AO=6;CIGAR=1X;DP=42;DPB=42;DPRA=3.6;EPP=16.0391;EPPR=81.1833;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=0.833333;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=232;QR=1449;RO=36;RPL=0;RPP=16.0391;RPPR=81.1833;RPR=6;RUN=1;SAF=6;SAP=16.0391;SAR=0;SRF=36;SRP=81.1833;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:27:21,6:21:845:6:232:-13.117,0,-68.2338 0/0:3:3,0:3:121:0:0:0,-0.90309,-11.28 0/0:12:12,0:12:483:0:0:0,-3.61236,-43.8212 dDocent_Contig_7038 185 . C T 901.5 . AB=0.482759;ABP=3.16006;AC=3;AF=0.5;AN=6;AO=30;CIGAR=1X;DP=87;DPB=87;DPRA=1.11111;EPP=68.1545;EPPR=126.784;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=1205;QR=2227;RO=57;RPL=30;RPP=68.1545;RPPR=126.784;RPR=0;RUN=1;SAF=0;SAP=68.1545;SAR=30;SRF=0;SRP=126.784;SRR=57;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:58:30,28:30:1173:28:1124:-83.9868,0,-88.3767 1/1:2:0,2:0:0:2:81:-7.68573,-0.60206,0 0/0:27:27,0:27:1054:0:0:0,-8.12781,-95.1524 dDocent_Contig_7040 98 . N A 167.459 . AB=0;ABP=0;AC=4;AF=1;AN=4;AO=5;CIGAR=1X;DP=5;DPB=5;DPRA=0;EPP=13.8677;EPPR=0;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=0;NS=2;NUMALT=1;ODDS=0;PAIRED=0.8;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=175;QR=0;RO=0;RPL=5;RPP=13.8677;RPPR=0;RPR=0;RUN=1;SAF=5;SAP=13.8677;SAR=0;SRF=0;SRP=0;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 1/1:4:0,4:0:0:4:140:-12.9449,-1.20412,0 ./.:.:.:.:.:.:.:. 1/1:1:0,1:0:0:1:35:-3.49863,-0.30103,0 dDocent_Contig_7041 10 . C T 322.903 . AB=0.444444;ABP=3.73412;AC=1;AF=0.166667;AN=6;AO=12;CIGAR=1X;DP=45;DPB=45;DPRA=3;EPP=29.068;EPPR=72.4974;GTI=0;LEN=1;MEANALT=2;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=0;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=463;QR=1296;RO=32;RPL=0;RPP=29.068;RPPR=72.4974;RPR=12;RUN=1;SAF=12;SAP=29.068;SAR=0;SRF=32;SRP=72.4974;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:27:14,12:14:565:12:463:-33.813,0,-42.9844 0/0:4:4,0:4:159:0:0:0,-1.20412,-14.6908 0/0:14:14,0:14:572:0:0:0,-4.21442,-51.8216 dDocent_Contig_7043 106 . N T 144.794 . AB=0;ABP=0;AC=6;AF=1;AN=6;AO=5;CIGAR=2X;DP=5;DPB=5;DPRA=0;EPP=13.8677;EPPR=0;GTI=0;LEN=1;MEANALT=1;MQM=35.6;MQMR=0;NS=3;NUMALT=1;ODDS=0;PAIRED=0.8;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=160;QR=0;RO=0;RPL=0;RPP=13.8677;RPPR=0;RPR=5;RUN=1;SAF=0;SAP=13.8677;SAR=5;SRF=0;SRP=0;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 1|1:2:0,2:0:0:2:68:-6.30994,-0.60206,0 1|1:2:0,2:0:0:2:59:-4.45464,-0.60206,0 1|1:1:0,1:0:0:1:33:-3.23614,-0.30103,0 dDocent_Contig_7045 16 . T A 186.693 . AB=0.130435;ABP=30.2953;AC=2;AF=0.333333;AN=6;AO=3;CIGAR=1X1M1X3M1X2M1X1M1X2M1X;DP=64;DPB=64;DPRA=23;EPP=9.52472;EPPR=94.2121;GTI=0;LEN=1;MEANALT=2;MQM=9;MQMR=60;NS=3;NUMALT=3;ODDS=0;PAIRED=0;PAIREDR=0.642857;PAO=0;PQA=0;PQR=0;PRO=0;QA=117;QR=1648;RO=42;RPL=0;RPP=9.52472;RPPR=94.2121;RPR=3;RUN=1;SAF=3;SAP=9.52472;SAR=0;SRF=42;SRP=94.2121;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|0:40:25,0,4,8:25:979:0,4,8:0,152,307:-17.6925,-25.2182,-105.737,-12.7495,-93.2738,-92.0697,0,-80.5393,-68.076,-78.131 1|1:1:0,0,0,0:0:0:0,0,0:0,0,0:0,0,0,0,0,0,0,0,0,0 0|0:23:17,3,0,3:17:669:3,0,3:117,0,112:-4.19396,-7.92714,-62.0755,-9.31147,-62.9786,-64.4653,0,-53.8117,-55.2921,-54.389 dDocent_Contig_7047 28 . G C 36.7028 . AB=0.153846;ABP=30.0702;AC=2;AF=0.5;AN=4;AO=4;CIGAR=1X;DP=26;DPB=26;DPRA=0;EPP=11.6962;EPPR=50.7827;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=2;NUMALT=1;ODDS=0;PAIRED=0;PAIREDR=0.954545;PAO=0;PQA=0;PQR=0;PRO=0;QA=160;QR=867;RO=22;RPL=0;RPP=11.6962;RPPR=50.7827;RPR=4;RUN=1;SAF=4;SAP=11.6962;SAR=0;SRF=22;SRP=50.7827;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:14:12,2:12:474:2:79:-3.28282,0,-38.7965 0/1:12:10,2:10:393:2:81:-4.07337,0,-32.1149 ./.:.:.:.:.:.:.:. dDocent_Contig_7048 11 . C T 673.525 . AB=0.5;ABP=3.0103;AC=3;AF=0.5;AN=6;AO=24;CIGAR=1X;DP=48;DPB=48;DPRA=0;EPP=55.1256;EPPR=55.1256;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=958;QR=970;RO=24;RPL=0;RPP=55.1256;RPPR=55.1256;RPR=24;RUN=1;SAF=24;SAP=55.1256;SAR=0;SRF=24;SRP=55.1256;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:34:16,18:16:645:18:719:-54.8019,0,-48.1465 0/1:2:1,1:1:41:1:39:-3.2945,0,-3.49251 0/1:12:7,5:7:284:5:200:-14.7672,0,-22.3216 dDocent_Contig_7049 69 . T G 767.56 . AB=0.491228;ABP=3.0484;AC=2;AF=0.333333;AN=6;AO=28;CIGAR=1X;DP=64;DPB=64;DPRA=4.07143;EPP=63.8115;EPPR=81.1833;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=1075;QR=1428;RO=36;RPL=28;RPP=63.8115;RPPR=81.1833;RPR=0;RUN=1;SAF=28;SAP=63.8115;SAR=0;SRF=36;SRP=81.1833;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:47:21,26:21:846:26:997:-75.8851,0,-62.3042 0/0:7:7,0:7:281:0:0:0,-2.10721,-25.662 0/1:10:8,2:8:301:2:78:-4.39317,0,-24.4293 dDocent_Contig_7050 15 . T A 112.251 . AB=0.175;ABP=39.7082;AC=2;AF=0.333333;AN=6;AO=7;CIGAR=1X;DP=98;DPB=98;DPRA=0.344828;EPP=18.2106;EPPR=200.614;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=0.912088;PAO=0;PQA=0;PQR=0;PRO=0;QA=281;QR=3578;RO=91;RPL=0;RPP=18.2106;RPPR=200.614;RPR=7;RUN=1;SAF=7;SAP=18.2106;SAR=0;SRF=91;SRP=200.614;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:58:58,0:58:2251:0:0:0,-17.4597,-202.772 0/1:10:9,1:9:361:1:40:-0.985379,0,-29.8436 0/1:30:24,6:24:966:6:241:-13.0352,0,-78.2099 dDocent_Contig_7051 5 . T C 331.554 . AB=0;ABP=0;AC=6;AF=1;AN=6;AO=11;CIGAR=1X2I3M1X;DP=11;DPB=28.2;DPRA=0;EPP=26.8965;EPPR=0;GTI=0;LEN=1;MEANALT=1;MQM=45;MQMR=0;NS=3;NUMALT=1;ODDS=0;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=585;PRO=16;QA=369;QR=0;RO=0;RPL=0;RPP=26.8965;RPPR=0;RPR=11;RUN=1;SAF=11;SAP=26.8965;SAR=0;SRF=0;SRP=0;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 1|1:3:0,3:0:0:3:102:-9.01224,-0.90309,0 1|1:5:0,5:0:0:5:164:-14.578,-1.50515,0 1|1:3:0,3:0:0:3:103:-9.08759,-0.90309,0 dDocent_Contig_7052 32 . T A 36.9042 . AB=0.0517241;ABP=104.246;AC=0;AF=0;AN=6;AO=3;CIGAR=2M1X2M;DP=66;DPB=75.8;DPRA=3.625;EPP=9.52472;EPPR=124.613;GTI=0;LEN=1;MEANALT=2;MQM=60;MQMR=60;NS=3;NUMALT=2;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=114;QR=2171;RO=56;RPL=0;RPP=9.52472;RPPR=124.613;RPR=3;RUN=1;SAF=3;SAP=9.52472;SAR=0;SRF=56;SRP=124.613;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|0:43:38,4,1:38:1470:4,1:142,37:-0.117575,0,-119.555,-8.5267,-117.732,-128.997 0|0:8:8,0,0:8:319:0,0:0,0:0,-2.40824,-29.078,-2.40824,-29.078,-29.078 0|0:15:10,3,2:10:382:3,2:105,77:-5.5114,0,-30.4335,-2.18567,-25.014,-32.9472 dDocent_Contig_7054 11 . A T 1233.24 . AB=0.0828402;ABP=258.46;AC=0;AF=0;AN=6;AO=14;CIGAR=1M1X9M;DP=169;DPB=169;DPRA=0;EPP=33.4109;EPPR=94.2121;GTI=0;LEN=1;MEANALT=10;MQM=52.5;MQMR=60;NS=3;NUMALT=7;ODDS=0;PAIRED=0;PAIREDR=0.928571;PAO=0;PQA=0;PQR=0;PRO=0;QA=552;QR=1660;RO=42;RPL=0;RPP=33.4109;RPPR=94.2121;RPR=14;RUN=1;SAF=14;SAP=33.4109;SAR=0;SRF=42;SRP=94.2121;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|0:70:14,3,0,0,0,6,17,23:14:557:3,0,0,0,6,17,23:121,0,0,0,227,678,923:-81.7927,-76.0326,-120.992,-86.0071,-121.896,-131.87,-86.0071,-121.896,-131.87,-131.87,-86.0071,-121.896,-131.87,-131.87,-131.87,-67.5762,-103.464,-113.439,-113.439,-113.439,-111.632,-30.171,-66.0595,-76.034,-76.034,-76.034,-57.6033,-70.9165,-9.97353,-45.8624,-55.8371,-55.8371,-55.8371,-37.4066,0,-48.9135 0|0:47:19,0,2,3,2,1,5,7:19:741:0,2,3,2,1,5,7:0,75,120,81,40,201,282:-17.529,-23.2485,-84.1594,-17.1062,-78.0166,-77.4146,-13.614,-74.525,-68.3824,-73.6219,-16.568,-77.4795,-71.3367,-67.8451,-76.8774,-19.9683,-80.8793,-74.7366,-71.2449,-74.1994,-80.5783,-6.68151,-67.5939,-61.4512,-57.9594,-60.9138,-64.3138,-66.0888,0,-60.9135,-54.7707,-51.2789,-54.2333,-57.6333,-44.3473,-58.8063 0|0:52:9,6,6,0,4,7,10,3:9:362:6,6,0,4,7,10,3:229,236,0,160,285,392,121:-29.5251,-13.4476,-41.4774,-12.8216,-23.8714,-40.8517,-32.2344,-43.2835,-42.6579,-62.0702,-19.0532,-30.1028,-29.477,-48.8895,-47.6853,-8.84638,-19.8964,-19.2705,-38.6832,-25.5021,-36.576,0,-11.0502,-10.4242,-29.8366,-16.6556,-6.44891,-26.8263,-22.2591,-33.3086,-32.6829,-52.0953,-38.9144,-28.708,-19.8614,-51.1922 dDocent_Contig_7055 36 . A G 35.484 . AB=0.222222;ABP=9.04217;AC=1;AF=0.166667;AN=6;AO=2;CIGAR=1X;DP=28;DPB=28;DPRA=0.947368;EPP=7.35324;EPPR=59.4686;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=82;QR=1021;RO=26;RPL=0;RPP=7.35324;RPPR=59.4686;RPR=2;RUN=1;SAF=2;SAP=7.35324;SAR=0;SRF=26;SRP=59.4686;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:9:7,2:7:287:2:82:-5.07041,0,-23.496 0/0:1:1,0:1:37:0:0:0,-0.30103,-3.69783 0/0:18:18,0:18:697:0:0:0,-5.41854,-63.0551 dDocent_Contig_7056 59 . G A 876.39 . AB=0.515152;ABP=3.1419;AC=3;AF=0.5;AN=6;AO=34;CIGAR=1X;DP=66;DPB=66;DPRA=0;EPP=76.8404;EPPR=72.4974;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=0.705882;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=1245;QR=1270;RO=32;RPL=34;RPP=76.8404;RPPR=72.4974;RPR=0;RUN=1;SAF=34;SAP=76.8404;SAR=0;SRF=32;SRP=72.4974;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:29:8,21:8:320:21:793:-62.953,0,-20.438 0/1:9:3,6:3:114:6:211:-16.6226,0,-7.92082 0/1:28:21,7:21:836:7:241:-13.5863,0,-67.1224 dDocent_Contig_7057 32 . T A 157.291 . AB=0.304348;ABP=10.6577;AC=2;AF=0.333333;AN=6;AO=8;CIGAR=1X;DP=40;DPB=40;DPRA=0;EPP=20.3821;EPPR=72.4974;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=323;QR=1257;RO=32;RPL=0;RPP=20.3821;RPPR=72.4974;RPR=8;RUN=1;SAF=8;SAP=20.3821;SAR=0;SRF=32;SRP=72.4974;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:17:16,1:16:634:1:41:0,-1.02294,-53.3031 0/1:16:14,2:14:548:2:81:-2.86925,0,-44.8475 0/1:7:2,5:2:75:5:201:-16.3633,0,-5.01289 dDocent_Contig_7058 34 . G C 481.035 . AB=0.212963;ABP=80.2986;AC=2;AF=0.333333;AN=6;AO=23;CIGAR=1X;DP=111;DPB=111;DPRA=18;EPP=52.9542;EPPR=194.1;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=927;QR=3504;RO=88;RPL=0;RPP=52.9542;RPPR=194.1;RPR=23;RUN=1;SAF=23;SAP=52.9542;SAR=0;SRF=88;SRP=194.1;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:81:63,18:63:2536:18:725:-41.1925,0,-203.982 0/0:3:3,0:3:112:0:0:0,-0.90309,-10.4449 0/1:27:22,5:22:856:5:202:-10.4337,0,-69.2223 dDocent_Contig_7059 42 . T A 349.143 . AB=0.358974;ABP=9.74743;AC=3;AF=0.5;AN=6;AO=14;CIGAR=1X;DP=39;DPB=39;DPRA=0;EPP=33.4109;EPPR=57.2971;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=567;QR=989;RO=25;RPL=0;RPP=33.4109;RPPR=57.2971;RPR=14;RUN=1;SAF=14;SAP=33.4109;SAR=0;SRF=25;SRP=57.2971;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:15:10,5:10:387:5:200:-13.8645,0,-30.6656 0/1:10:8,2:8:325:2:80:-4.58149,0,-26.6088 0/1:14:7,7:7:277:7:287:-21.9908,0,-21.085 dDocent_Contig_7060 43 . G T 108.35 . AB=0.152174;ABP=51.3492;AC=1;AF=0.166667;AN=6;AO=7;CIGAR=1X;DP=80;DPB=80;DPRA=2.70588;EPP=18.2106;EPPR=152.961;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=287;QR=2875;RO=73;RPL=0;RPP=18.2106;RPPR=152.961;RPR=7;RUN=1;SAF=7;SAP=18.2106;SAR=0;SRF=73;SRP=161.528;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:46:39,7:39:1524:7:287:-12.3579,0,-123.552 0/0:11:11,0:11:431:0:0:0,-3.31133,-39.1436 0/0:23:23,0:23:920:0:0:0,-6.92369,-83.1036 dDocent_Contig_7062 36 . T G 892.789 . AB=0.725;ABP=20.5992;AC=2;AF=0.333333;AN=6;AO=31;CIGAR=1X;DP=72;DPB=72;DPRA=0;EPP=8.68415;EPPR=92.0407;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=0;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=1238;QR=1107;RO=41;RPL=4;RPP=40.0654;RPPR=92.0407;RPR=27;RUN=1;SAF=20;SAP=8.68415;SAR=11;SRF=41;SRP=92.0407;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:32:30,2:30:838:2:81:0,-1.94723,-68 0/1:20:4,16:4:94:16:630:-51.0158,0,-2.67337 0/1:20:7,13:7:175:13:527:-41.7563,0,-9.97766 dDocent_Contig_7064 18 . C T 389.472 . AB=0.290909;ABP=23.8959;AC=2;AF=0.333333;AN=6;AO=16;CIGAR=3M1X1M;DP=55;DPB=71.8;DPRA=0;EPP=37.7539;EPPR=52.9542;GTI=0;LEN=1;MEANALT=3.33333;MQM=60;MQMR=60;NS=3;NUMALT=3;ODDS=1.38778e-17;PAIRED=0.875;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=622;QR=889;RO=23;RPL=0;RPP=37.7539;RPPR=52.9542;RPR=16;RUN=1;SAF=16;SAP=37.7539;SAR=0;SRF=23;SRP=52.9542;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|1:32:14,5,3,9:14:538:5,3,9:195,112,351:-24.6451,-12.8273,-55.4865,-19.6914,-47.8228,-62.9503,0,-28.1355,-34.9986,-41.4581 0|1:9:3,1,1,4:3:117:1,1,4:35,40,154:-11.7462,-9.80783,-19.1252,-9.35054,-16.1295,-18.6716,0,-6.78732,-6.32755,-8.42248 0|0:14:6,2,3,3:6:234:2,3,3:77,119,117:-7.99271,-3.47857,-22.1088,0,-12.9135,-18.3319,-0.182163,-13.0939,-9.6172,-18.5119 dDocent_Contig_7068 15 . C A 82.6501 . AB=0.104;ABP=173.271;AC=1;AF=0.166667;AN=6;AO=13;CIGAR=1X;DP=223;DPB=223;DPRA=2.55102;EPP=31.2394;EPPR=392.18;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=59.8476;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=0.780952;PAO=0;PQA=0;PQR=0;PRO=0;QA=523;QR=8407;RO=210;RPL=0;RPP=31.2394;RPPR=459.02;RPR=13;RUN=1;SAF=13;SAP=31.2394;SAR=0;SRF=202;SRP=392.18;SRR=8;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:125:112,13:112:4494:13:523:-9.78789,0,-366.449 0/0:35:35,0:35:1385:0:0:0,-10.536,-124.908 0/0:63:63,0:63:2528:0:0:0,-18.9649,-227.654 dDocent_Contig_7069 14 . T C 963.486 . AB=0.314286;ABP=23.9805;AC=4;AF=0.666667;AN=6;AO=26;CIGAR=1X2M;DP=74;DPB=74;DPRA=0;EPP=59.4686;EPPR=57.2971;GTI=0;LEN=1;MEANALT=2;MQM=60;MQMR=60;NS=3;NUMALT=2;ODDS=0;PAIRED=0.192308;PAIREDR=0.92;PAO=0;PQA=0;PQR=0;PRO=0;QA=1029;QR=983;RO=25;RPL=0;RPP=59.4686;RPPR=57.2971;RPR=26;RUN=1;SAF=26;SAP=59.4686;SAR=0;SRF=25;SRP=57.2971;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|1:45:13,18,12:13:506:18,12:724,469:-55.756,0,-36.1578,-21.1292,-3.03209,-59.0898 1|1:4:0,0,4:0:0:0,4:0,159:-14.6917,-14.6917,-14.6917,-1.20412,-1.20412,0 0|1:25:12,3,10:12:477:3,10:121,401:-29.4234,-23.061,-61.4238,0,-29.2877,-36.2528 dDocent_Contig_7070 11 . T A 725.617 . AB=0.223881;ABP=136.118;AC=3;AF=0.5;AN=6;AO=45;CIGAR=2X;DP=201;DPB=201;DPRA=0;EPP=100.727;EPPR=341.76;GTI=0;LEN=1;MEANALT=1;MQM=42.0667;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=0.511111;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=1641;QR=6203;RO=156;RPL=0;RPP=100.727;RPPR=341.76;RPR=45;RUN=1;SAF=45;SAP=100.727;SAR=0;SRF=156;SRP=341.76;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|1:136:121,15:121:4834:15:550:-4.44348,0,-394.037 0|1:16:2,14:2:77:14:507:-38.4537,0,-2.49172 0|1:49:33,16:33:1292:16:584:-35.1426,0,-101.798 dDocent_Contig_7072 33 . T A 83.2704 . AB=0.266667;ABP=10.1038;AC=1;AF=0.166667;AN=6;AO=7;CIGAR=1X3M1X;DP=87;DPB=87;DPRA=0;EPP=18.2106;EPPR=155.013;GTI=0;LEN=1;MEANALT=2.33333;MQM=60;MQMR=60;NS=3;NUMALT=2;ODDS=6.93889e-18;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=271;QR=2753;RO=70;RPL=0;RPP=18.2106;RPPR=155.013;RPR=7;RUN=1;SAF=7;SAP=18.2106;SAR=0;SRF=70;SRP=155.013;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|0:40:34,1,4:34:1336:1,4:39,113:0,-7.00485,-116.717,-1.24468,-108.066,-110.068 0|1:15:9,4,2:9:357:4,2:156,67:-10.1507,0,-28.2335,-7.45208,-24.0226,-36.2421 0|0:32:27,2,3:27:1060:2,3:76,88:0,-1.8602,-88.5167,-1.16448,-82.1135,-87.4425 dDocent_Contig_7073 111 . C T 53.7796 . AB=0.375;ABP=4.09604;AC=1;AF=0.166667;AN=6;AO=3;CIGAR=1X;DP=25;DPB=25;DPRA=0.941176;EPP=9.52472;EPPR=50.7827;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=103;QR=725;RO=22;RPL=0;RPP=9.52472;RPPR=50.7827;RPR=3;RUN=1;SAF=0;SAP=9.52472;SAR=3;SRF=0;SRP=50.7827;SRR=22;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:13:13,0:13:415:0:0:0,-3.91339,-37.6572 0/0:4:4,0:4:140:0:0:0,-1.20412,-12.9449 0/1:8:5,3:5:170:3:103:-7.20178,0,-13.2266 dDocent_Contig_7074 11 . T C 337.3 . AB=0.202247;ABP=71.5459;AC=2;AF=0.333333;AN=6;AO=19;CIGAR=1X2M1X3M1I8M;DP=102;DPB=103.4;DPRA=0;EPP=44.2683;EPPR=178.9;GTI=0;LEN=1;MEANALT=1.66667;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=744;QR=3158;RO=81;RPL=0;RPP=44.2683;RPPR=178.9;RPR=19;RUN=1;SAF=19;SAP=44.2683;SAR=0;SRF=81;SRP=178.9;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|1:55:41,14:41:1613:14:544:-32.7451,0,-128.866 0|0:13:11,1:11:428:1:40:0,-0.0162487,-34.879 0|1:34:29,4:29:1117:4:160:-4.50597,0,-90.5578 dDocent_Contig_7075 189 . T A 571.585 . AB=0.555556;ABP=3.9754;AC=3;AF=0.5;AN=6;AO=20;CIGAR=1X;DP=36;DPB=36;DPRA=0;EPP=46.4397;EPPR=37.7539;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=804;QR=645;RO=16;RPL=20;RPP=46.4397;RPPR=37.7539;RPR=0;RUN=1;SAF=0;SAP=46.4397;SAR=20;SRF=0;SRP=37.7539;SRR=16;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:17:6,11:6:241:11:439:-34.7464,0,-16.9488 0/1:5:1,4:1:41:4:160:-13.2787,0,-2.58942 0/1:14:9,5:9:363:5:205:-14.6206,0,-28.8204 dDocent_Contig_7076 45 . T A 117.725 . AB=0.137931;ABP=69.053;AC=3;AF=0.5;AN=6;AO=8;CIGAR=2M2I7M1X3M;DP=65;DPB=66.2308;DPRA=0;EPP=20.3821;EPPR=115.927;GTI=0;LEN=1;MEANALT=2.5;MQM=60;MQMR=60;NS=3;NUMALT=2;ODDS=6.93889e-18;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=306;QR=2043;RO=52;RPL=0;RPP=20.3821;RPPR=115.927;RPR=8;RUN=1;SAF=8;SAP=20.3821;SAR=0;SRF=52;SRP=115.927;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|1:30:26,1,3:26:1015:1,3:41,111:-1.22321,-5.65598,-88.8113,0,-80.0347,-82.5164 0|1:28:21,0,5:21:828:0,5:0,195:-9.69329,-16.0149,-84.1386,0,-68.1106,-66.6054 0|1:7:5,2,0:5:200:2,0:81,0:-5.57852,0,-16.2729,-7.08367,-16.875,-23.5555 dDocent_Contig_7077 17 . T A 44.1 . AB=0.166667;ABP=20.3821;AC=1;AF=0.166667;AN=6;AO=3;CIGAR=1X;DP=38;DPB=38;DPRA=1.8;EPP=9.52472;EPPR=79.0118;GTI=0;LEN=1;MEANALT=1;MQM=56;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=122;QR=1320;RO=35;RPL=0;RPP=9.52472;RPPR=79.0118;RPR=3;RUN=1;SAF=3;SAP=9.52472;SAR=0;SRF=35;SRP=79.0118;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:18:15,3:15:558:3:122:-5.93283,0,-45.1271 0/0:6:6,0:6:226:0:0:0,-1.80618,-20.6997 0/0:14:14,0:14:536:0:0:0,-4.21442,-48.5835 dDocent_Contig_7078 42 . G A 37.547 . AB=0.285714;ABP=5.80219;AC=1;AF=0.166667;AN=6;AO=2;CIGAR=1X;DP=24;DPB=24;DPRA=0.823529;EPP=7.35324;EPPR=50.7827;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=81;QR=857;RO=22;RPL=0;RPP=7.35324;RPPR=50.7827;RPR=2;RUN=1;SAF=2;SAP=7.35324;SAR=0;SRF=22;SRP=50.7827;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:10:10,0:10:395:0:0:0,-3.0103,-35.9062 0/0:7:7,0:7:264:0:0:0,-2.10721,-24.1163 0/1:7:5,2:5:198:2:81:-5.57852,0,-16.0898 dDocent_Contig_7079 121 . C T 178.67 . AB=0.571429;ABP=3.63072;AC=1;AF=0.25;AN=4;AO=9;CIGAR=1X;DP=26;DPB=26;DPRA=0;EPP=22.5536;EPPR=39.9253;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=2;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=300;QR=545;RO=17;RPL=0;RPP=22.5536;RPPR=39.9253;RPR=9;RUN=1;SAF=0;SAP=22.5536;SAR=9;SRF=0;SRP=39.9253;SRR=17;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL ./.:.:.:.:.:.:.:. 0/0:12:11,1:11:366:1:36:0,-0.0140849,-29.6632 0/1:14:6,8:6:179:8:264:-19.8649,0,-12.1884 dDocent_Contig_7081 108 . A T 995.873 . AB=0.645161;ABP=14.358;AC=3;AF=0.5;AN=6;AO=40;CIGAR=1X3M;DP=62;DPB=62;DPRA=0;EPP=89.8692;EPPR=44.2683;GTI=0;LEN=1;MEANALT=1.66667;MQM=60;MQMR=60;NS=3;NUMALT=2;ODDS=0;PAIRED=0;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=1362;QR=635;RO=19;RPL=0;RPP=89.8692;RPPR=44.2683;RPR=40;RUN=1;SAF=0;SAP=89.8692;SAR=40;SRF=0;SRP=44.2683;SRR=19;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|1:29:9,0,19:9:294:0,19:0,649:-49.9534,-52.6626,-76.3968,0,-23.7179,-17.9984 0|1:19:6,2,11:6:213:2,11:68,371:-28.2598,-24.5501,-41.3097,0,-11.855,-14.0554 0|1:14:4,0,10:4:128:0,10:0,342:-26.897,-28.1011,-38.4066,0,-10.6317,-7.62139 dDocent_Contig_7082 34 . C G 1199.7 . AB=0.75;ABP=31.2394;AC=2;AF=0.5;AN=4;AO=39;CIGAR=1X;DP=52;DPB=52;DPRA=0;EPP=87.6977;EPPR=31.2394;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=2;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=1541;QR=520;RO=13;RPL=0;RPP=87.6977;RPPR=31.2394;RPR=39;RUN=1;SAF=39;SAP=87.6977;SAR=0;SRF=13;SRP=31.2394;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:31:8,23:8:318:23:913:-73.1419,0,-19.6529 ./.:.:.:.:.:.:.:. 0/1:21:5,16:5:202:16:628:-50.5267,0,-12.2399 dDocent_Contig_7083 11 . T C 894.732 . AB=0.432432;ABP=5.94472;AC=3;AF=0.5;AN=6;AO=32;CIGAR=2X;DP=74;DPB=74;DPRA=0;EPP=72.4974;EPPR=68.1545;GTI=0;LEN=1;MEANALT=2;MQM=60;MQMR=60;NS=3;NUMALT=2;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=1250;QR=1176;RO=30;RPL=0;RPP=72.4974;RPPR=68.1545;RPR=32;RUN=1;SAF=32;SAP=72.4974;SAR=0;SRF=30;SRP=68.1545;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|1:40:18,15,7:18:718:15,7:582,282:-42.3811,0,-54.6102,-24.5519,-35.8816,-81.5792 1|0:19:3,13,3:3:106:13,3:514,120:-42.6901,-1.30201,-5.9951,-33.7071,0,-41.4259 0|1:15:9,4,2:9:352:4,2:154,82:-9.9176,0,-27.7194,-5.85045,-22.152,-34.1914 dDocent_Contig_7084 97 . G T 33.8665 . AB=0.3;ABP=6.48466;AC=1;AF=0.25;AN=4;AO=3;CIGAR=1X;DP=17;DPB=17;DPRA=1.42857;EPP=9.52472;EPPR=33.4109;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=2;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=90;QR=485;RO=14;RPL=3;RPP=9.52472;RPPR=33.4109;RPR=0;RUN=1;SAF=3;SAP=9.52472;SAR=0;SRF=14;SRP=33.4109;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:7:7,0:7:241:0:0:0,-2.10721,-22.0264 ./.:.:.:.:.:.:.:. 0/1:10:7,3:7:244:3:90:-5.38645,0,-19.2898 dDocent_Contig_7085 24 . A T 80.6067 . AB=0.266667;ABP=10.1038;AC=2;AF=0.333333;AN=6;AO=4;CIGAR=1X;DP=46;DPB=46;DPRA=0.241935;EPP=11.6962;EPPR=94.2121;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=0.25;PAIREDR=0.97619;PAO=0;PQA=0;PQR=0;PRO=0;QA=163;QR=1690;RO=42;RPL=0;RPP=11.6962;RPPR=94.2121;RPR=4;RUN=1;SAF=4;SAP=11.6962;SAR=0;SRF=42;SRP=94.2121;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:31:31,0:31:1244:0:0:0,-9.33193,-112.223 0/1:5:2,3:2:81:3:122:-9.86734,0,-6.18058 0/1:10:9,1:9:365:1:41:-1.08427,0,-30.2042 dDocent_Contig_7086 56 . T C 141.237 . AB=0.4;ABP=4.31318;AC=1;AF=0.25;AN=4;AO=6;CIGAR=1X;DP=21;DPB=21;DPRA=2.5;EPP=16.0391;EPPR=35.5824;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=2;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=222;QR=542;RO=15;RPL=6;RPP=16.0391;RPPR=35.5824;RPR=0;RUN=1;SAF=6;SAP=16.0391;SAR=0;SRF=15;SRP=35.5824;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:15:9,6:9:330:6:222:-15.8226,0,-25.5344 ./.:.:.:.:.:.:.:. 0/0:6:6,0:6:212:0:0:0,-1.80618,-19.425 dDocent_Contig_7087 19 . A G 934.009 . AB=0.2;ABP=10.8276;AC=1;AF=0.166667;AN=6;AO=2;CIGAR=1M1I3M1X2M;DP=115;DPB=120.571;DPRA=0;EPP=7.35324;EPPR=168.042;GTI=0;LEN=1;MEANALT=2;MQM=60;MQMR=60;NS=3;NUMALT=2;ODDS=0;PAIRED=0;PAIREDR=0.973684;PAO=0;PQA=0;PQR=0;PRO=0;QA=82;QR=3020;RO=76;RPL=0;RPP=7.35324;RPPR=168.042;RPR=2;RUN=1;SAF=2;SAP=7.35324;SAR=0;SRF=76;SRP=168.042;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|0:70:49,0,21:49:1950:0,21:0,826:-53.5822,-68.3327,-228.898,0,-160.959,-154.638 1|0:10:2,2,6:2:80:2,6:82,233:-18.7119,-12.5404,-18.5314,-0.187887,0,-4.96693 0|0:35:25,0,10:25:990:0,10:0,408:-26.5445,-34.0703,-115.543,0,-81.8764,-78.8661 dDocent_Contig_7088 12 . G A 341.384 . AB=0.134021;ABP=115.86;AC=4;AF=0.666667;AN=6;AO=18;CIGAR=1X;DP=102;DPB=102;DPRA=0;EPP=42.0968;EPPR=185.414;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=6.93889e-18;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=729;QR=3353;RO=84;RPL=0;RPP=42.0968;RPPR=185.414;RPR=18;RUN=1;SAF=18;SAP=42.0968;SAR=0;SRF=84;SRP=185.414;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:66:56,10:56:2250:10:404:-16.8524,0,-182.79 1/1:5:0,5:0:0:5:203:-18.6531,-1.50515,0 0/1:31:28,3:28:1103:3:122:-2.04056,0,-90.2215 dDocent_Contig_7089 21 . T C 58.0024 . AB=0.16;ABP=28.1125;AC=1;AF=0.166667;AN=6;AO=4;CIGAR=1X;DP=83;DPB=83;DPRA=0.862069;EPP=11.6962;EPPR=174.557;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=164;QR=3195;RO=79;RPL=0;RPP=11.6962;RPPR=174.557;RPR=4;RUN=1;SAF=4;SAP=11.6962;SAR=0;SRF=79;SRP=174.557;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:41:41,0:41:1671:0:0:0,-12.3422,-150.606 0/0:17:17,0:17:682:0:0:0,-5.11751,-61.7079 0/1:25:21,4:21:842:4:164:-7.62415,0,-68.5615 dDocent_Contig_7090 60 . C A 43.5785 . AB=0.125;ABP=51.8684;AC=1;AF=0.166667;AN=6;AO=6;CIGAR=1X;DP=62;DPB=62;DPRA=3.92857;EPP=16.0391;EPPR=124.613;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=227;QR=2243;RO=56;RPL=6;RPP=16.0391;RPPR=124.613;RPR=0;RUN=1;SAF=6;SAP=16.0391;SAR=0;SRF=56;SRP=124.613;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:40:35,5:35:1409:5:195:-5.88063,0,-115.014 0/0:7:7,0:7:276:0:0:0,-2.10721,-25.2065 0/0:15:14,1:14:558:1:32:0,-1.31614,-47.3636 dDocent_Contig_7091 14 . C T 42.4592 . AB=0.166667;ABP=20.3821;AC=1;AF=0.166667;AN=6;AO=3;CIGAR=1X;DP=49;DPB=49;DPRA=1.16129;EPP=9.52472;EPPR=102.898;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=0.847826;PAO=0;PQA=0;PQR=0;PRO=0;QA=120;QR=1860;RO=46;RPL=0;RPP=9.52472;RPPR=102.898;RPR=3;RUN=1;SAF=3;SAP=9.52472;SAR=0;SRF=46;SRP=102.898;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:18:15,3:15:601:3:120:-5.76877,0,-49.0105 0/0:17:17,0:17:689:0:0:0,-5.11751,-62.3391 0/0:14:14,0:14:570:0:0:0,-4.21442,-51.6416 dDocent_Contig_7093 9 . G A 474.148 . AB=0.122449;ABP=63.6786;AC=0;AF=0;AN=6;AO=6;CIGAR=2X3M;DP=67;DPB=67;DPRA=0;EPP=16.0391;EPPR=63.8115;GTI=0;LEN=1;MEANALT=4;MQM=24;MQMR=60;NS=3;NUMALT=4;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=144;QR=1092;RO=28;RPL=0;RPP=16.0391;RPPR=63.8115;RPR=6;RUN=1;SAF=6;SAP=16.0391;SAR=0;SRF=28;SRP=63.8115;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|0:36:14,7,5,4,6:14:547:7,5,4,6:269,188,96,240:-17.8552,0,-42.8834,-6.66199,-29.587,-50.1427,-15.7465,-38.6601,-45.3158,-59.5108,-2.2834,-25.2123,-31.8707,-40.943,-45.4686 0|0:13:2,2,1,2,6:2:73:2,1,2,6:79,39,48,240:-19.7599,-13.854,-19.2174,-17.1534,-16.6104,-22.817,-17.2184,-16.6747,-19.9706,-22.5743,-0.549027,0,-3.31037,-3.39717,-4.71957 0|0:18:12,6,0,0,0:12:472:6,0,0,0:226,0,0,0:-15.2825,0,-37.4138,-18.8948,-39.22,-57.7329,-18.8948,-39.22,-57.7329,-57.7329,-18.8948,-39.22,-57.7329,-57.7329,-57.7329 dDocent_Contig_7097 13 . T C 934.929 . AB=0.052356;ABP=335.45;AC=2;AF=0.333333;AN=6;AO=10;CIGAR=2X5M1X1M;DP=207;DPB=207;DPRA=5.96875;EPP=24.725;EPPR=270.101;GTI=0;LEN=1;MEANALT=8.5;MQM=60;MQMR=60;NS=3;NUMALT=3;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=401;QR=4837;RO=123;RPL=0;RPP=24.725;RPPR=270.101;RPR=10;RUN=1;SAF=10;SAP=24.725;SAR=0;SRF=123;SRP=270.101;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|1:128:70,28,8,8:70:2762:28,8,8:1101,322,314:-69.4944,0,-218.83,-64.0262,-200.719,-288.874,-64.7428,-201.435,-265.459,-289.59 0|0:16:16,0,0,0:16:626:0,0,0:0,0,0:0,-4.81648,-56.6757,-4.81648,-56.6757,-56.6757,-4.81648,-56.6757,-56.6757,-56.6757 0|1:63:37,12,2,6:37:1449:12,2,6:470,79,242:-27.5213,0,-115.547,-32.157,-112.657,-150.704,-18.7038,-99.2085,-131.357,-136.052 dDocent_Contig_7098 80 . T G 365.979 . AB=0.333333;ABP=16.0391;AC=3;AF=0.5;AN=6;AO=18;CIGAR=1X;DP=54;DPB=54;DPRA=0;EPP=42.0968;EPPR=81.1833;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=637;QR=1319;RO=36;RPL=18;RPP=42.0968;RPPR=81.1833;RPR=0;RUN=1;SAF=18;SAP=42.0968;SAR=0;SRF=36;SRP=81.1833;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:28:22,6:22:805:6:205:-10.3535,0,-64.3463 0/1:7:5,2:5:184:2:76:-5.10746,0,-14.8098 0/1:19:9,10:9:330:10:356:-26.6596,0,-24.3304 dDocent_Contig_7099 25 . C A 5986.27 . AB=0.164179;ABP=68.6406;AC=0;AF=0;AN=6;AO=12;CIGAR=1M1X;DP=228;DPB=228;DPRA=0;EPP=29.068;EPPR=50.7827;GTI=0;LEN=1;MEANALT=3;MQM=60;MQMR=60;NS=3;NUMALT=3;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=477;QR=887;RO=22;RPL=0;RPP=29.068;RPPR=50.7827;RPR=12;RUN=1;SAF=12;SAP=29.068;SAR=0;SRF=22;SRP=50.7827;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|0:142:8,10,1,122:8:321:10,1,122:396,40,4890:-410.295,-380.111,-403.55,-409.408,-403.265,-435.557,-10.2744,-4.13521,-33.4305,0 0|0:19:2,0,0,16:2:80:0,0,16:0,0,641:-52.1985,-52.8005,-59.3906,-52.8005,-59.3906,-59.3906,0,-6.58357,-6.58357,-1.76709 0|0:67:12,0,11,44:12:486:0,11,44:0,437,1738:-139.345,-142.958,-183.034,-106.982,-147.059,-143.748,0,-40.0788,-4.10742,-26.8335 dDocent_Contig_7100 53 . T A 1252.87 . AB=0.347826;ABP=30.7674;AC=3;AF=0.5;AN=6;AO=48;CIGAR=1X;DP=138;DPB=138;DPRA=0;EPP=107.241;EPPR=198.443;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=6.93889e-18;PAIRED=0.916667;PAIREDR=0.822222;PAO=0;PQA=0;PQR=0;PRO=0;QA=1904;QR=3416;RO=90;RPL=48;RPP=107.241;RPPR=198.443;RPR=0;RUN=1;SAF=48;SAP=107.241;SAR=0;SRF=90;SRP=198.443;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:94:68,26:68:2586:26:1036:-65.2349,0,-204.617 0/1:23:12,11:12:459:11:425:-31.6721,0,-34.7349 0/1:21:10,11:10:371:11:443:-33.9032,0,-27.4144 dDocent_Contig_7102 76 . T A 530.211 . AB=0.340426;ABP=13.4056;AC=2;AF=0.333333;AN=6;AO=16;CIGAR=9M1X9M;DP=57;DPB=58.2632;DPRA=0;EPP=37.7539;EPPR=44.2683;GTI=0;LEN=1;MEANALT=4;MQM=60;MQMR=60;NS=3;NUMALT=4;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=571;QR=699;RO=19;RPL=16;RPP=37.7539;RPPR=44.2683;RPR=0;RUN=1;SAF=16;SAP=37.7539;SAR=0;SRF=19;SRP=44.2683;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|1:25:8,0,5,0,11:8:294:0,5,0,11:0,191,0,397:-29.9847,-32.393,-56.4308,-16.7164,-40.7573,-39.2521,-32.393,-56.4308,-40.7573,-56.4308,0,-24.0346,-8.35814,-24.0346,-20.7233 0|0:10:2,0,6,2,0:2:74:0,6,2,0:0,216,73,0:-17.0141,-17.6162,-23.672,0,-6.05655,-4.25037,-11.6517,-17.7082,-0.0958025,-17.1062,-17.6162,-23.672,-6.05655,-17.7082,-23.672 0|1:22:9,2,4,1,5:9:331:2,4,1,5:70,146,25,174:-11.4409,-8.45395,-34.9259,-2.22072,-23.6045,-28.0955,-12.2093,-33.5846,-27.3568,-38.978,0,-21.3815,-15.1525,-25.1339,-25.5709 dDocent_Contig_7103 31 . T A 358.279 . AB=0.232877;ABP=48.2543;AC=3;AF=0.5;AN=6;AO=17;CIGAR=1X;DP=73;DPB=73;DPRA=0;EPP=39.9253;EPPR=124.613;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=680;QR=2257;RO=56;RPL=0;RPP=39.9253;RPPR=124.613;RPR=17;RUN=1;SAF=17;SAP=39.9253;SAR=0;SRF=56;SRP=124.613;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:46:32,14:32:1294:14:564:-37.2554,0,-102.874 0/1:8:7,1:7:282:1:41:-1.68633,0,-23.3444 0/1:19:17,2:17:681:2:75:-1.39923,0,-55.8982 dDocent_Contig_7105 20 . T A 102.329 . AB=0.145833;ABP=55.3066;AC=1;AF=0.166667;AN=6;AO=7;CIGAR=1X;DP=64;DPB=64;DPRA=6;EPP=18.2106;EPPR=126.784;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=287;QR=2266;RO=57;RPL=0;RPP=18.2106;RPPR=126.784;RPR=7;RUN=1;SAF=7;SAP=18.2106;SAR=0;SRF=57;SRP=126.784;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:48:41,7:41:1616:7:287:-11.7558,0,-131.223 0/0:6:6,0:6:243:0:0:0,-1.80618,-22.2476 0/0:10:10,0:10:407:0:0:0,-3.0103,-36.9906 dDocent_Contig_7106 22 . G A 2185.59 . AB=0.612403;ABP=17.167;AC=3;AF=0.5;AN=6;AO=79;CIGAR=1X;DP=129;DPB=129;DPRA=0;EPP=174.557;EPPR=111.584;GTI=0;LEN=1;MEANALT=1;MQM=40.3418;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=0.0126582;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=3178;QR=1969;RO=50;RPL=0;RPP=174.557;RPPR=111.584;RPR=79;RUN=1;SAF=79;SAP=174.557;SAR=0;SRF=50;SRP=111.584;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:73:28,45:28:1096:45:1808:-129.794,0,-76.9564 0/1:31:7,24:7:270:24:966:-69.2963,0,-15.3302 0/1:25:15,10:15:603:10:404:-24.9917,0,-47.0835 dDocent_Contig_7110 96 . T C 55.6406 . AB=0.375;ABP=4.09604;AC=1;AF=0.166667;AN=6;AO=3;CIGAR=1X;DP=56;DPB=56;DPRA=0.333333;EPP=9.52472;EPPR=118.098;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=105;QR=1869;RO=53;RPL=3;RPP=9.52472;RPPR=118.098;RPR=0;RUN=1;SAF=3;SAP=9.52472;SAR=0;SRF=53;SRP=118.098;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:43:43,0:43:1517:0:0:0,-12.9443,-136.824 0/1:8:5,3:5:179:3:105:-7.38792,0,-14.0522 0/0:5:5,0:5:173:0:0:0,-1.50515,-15.9099 dDocent_Contig_7111 32 . A C 254.404 . AB=0.24;ABP=32.3686;AC=2;AF=0.333333;AN=6;AO=12;CIGAR=1X;DP=54;DPB=54;DPRA=6.25;EPP=29.068;EPPR=94.2121;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=479;QR=1676;RO=42;RPL=0;RPP=29.068;RPPR=94.2121;RPR=12;RUN=1;SAF=12;SAP=29.068;SAR=0;SRF=42;SRP=94.2121;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:31:21,10:21:847:10:398:-26.8465,0,-67.2117 0/0:4:4,0:4:163:0:0:0,-1.20412,-15.0584 0/1:19:17,2:17:666:2:81:-1.96616,0,-54.5417 dDocent_Contig_7114 55 . C G 170.34 . AB=0.318182;ABP=9.32731;AC=1;AF=0.166667;AN=6;AO=9;CIGAR=1X;DP=136;DPB=136;DPRA=0.614754;EPP=22.5536;EPPR=276.616;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=359;QR=4979;RO=126;RPL=9;RPP=22.5536;RPPR=276.616;RPR=0;RUN=1;SAF=9;SAP=22.5536;SAR=0;SRF=126;SRP=276.616;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:61:60,0:60:2359:0:0:0,-18.0618,-212.059 0/0:53:51,2:51:2027:2:80:0,-8.36301,-175.034 0/1:22:15,7:15:593:7:279:-18.8579,0,-47.0828 dDocent_Contig_7115 35 . T C 197.167 . AB=0.145833;ABP=107.603;AC=2;AF=0.333333;AN=6;AO=15;CIGAR=1X;DP=114;DPB=114;DPRA=0;EPP=35.5824;EPPR=217.986;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=0.933333;PAIREDR=0.939394;PAO=0;PQA=0;PQR=0;PRO=0;QA=611;QR=3937;RO=99;RPL=0;RPP=35.5824;RPPR=217.986;RPR=15;RUN=1;SAF=15;SAP=35.5824;SAR=0;SRF=99;SRP=217.986;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:86:75,11:75:2969:11:449:-14.8773,0,-241.407 0/1:10:7,3:7:282:3:122:-8.36219,0,-22.7423 0/0:18:17,1:17:686:1:40:0,-1.42286,-58.0736 dDocent_Contig_7117 31 . A G 234.803 . AB=0.357143;ABP=7.97367;AC=3;AF=0.5;AN=6;AO=10;CIGAR=1X;DP=28;DPB=28;DPRA=0;EPP=24.725;EPPR=42.0968;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=403;QR=715;RO=18;RPL=0;RPP=24.725;RPPR=42.0968;RPR=10;RUN=1;SAF=10;SAP=24.725;SAR=0;SRF=18;SRP=42.0968;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:15:10,5:10:394:5:202:-14.0464,0,-31.2994 0/1:7:5,2:5:202:2:79:-5.39042,0,-16.4549 0/1:6:3,3:3:119:3:122:-9.56631,0,-9.28883 dDocent_Contig_7118 12 . G A 103.783 . AB=0.193548;ABP=28.2974;AC=1;AF=0.166667;AN=6;AO=8;CIGAR=1X;DP=100;DPB=100;DPRA=6.64286;EPP=20.3821;EPPR=202.786;GTI=0;LEN=1;MEANALT=1;MQM=46.625;MQMR=60;NS=3;NUMALT=1;ODDS=3.46945e-18;PAIRED=0;PAIREDR=0.934783;PAO=0;PQA=0;PQR=0;PRO=0;QA=325;QR=3679;RO=92;RPL=0;RPP=20.3821;RPPR=202.786;RPR=8;RUN=1;SAF=8;SAP=20.3821;SAR=0;SRF=92;SRP=202.786;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:62:60,2:60:2395:2:82:0,-11.5462,-208.583 0/0:7:7,0:7:283:0:0:0,-2.10721,-25.843 0/1:31:25,6:25:1001:6:243:-12.2022,0,-81.053 dDocent_Contig_7119 22 . G T 1256.61 . AB=0.5;ABP=3.0103;AC=3;AF=0.5;AN=6;AO=43;CIGAR=1X1M;DP=86;DPB=86;DPRA=0;EPP=96.3836;EPPR=81.1833;GTI=0;LEN=1;MEANALT=1.33333;MQM=60;MQMR=60;NS=3;NUMALT=2;ODDS=1.38778e-17;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=1715;QR=1427;RO=36;RPL=0;RPP=96.3836;RPPR=81.1833;RPR=43;RUN=1;SAF=43;SAP=96.3836;SAR=0;SRF=36;SRP=81.1833;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|1:45:20,7,18:20:795:7,18:283,719:-53.1904,-35.8773,-99.222,0,-42.1139,-60.0294 0|1:28:10,0,18:10:391:0,18:0,718:-56.5185,-59.5288,-91.6712,0,-32.5358,-27.1173 0|1:13:6,0,7:6:241:0,7:0,278:-21.475,-23.2812,-43.142,0,-20.2599,-18.1527 dDocent_Contig_7120 16 . A G 1123.86 . AB=0.678571;ABP=18.5208;AC=3;AF=0.5;AN=6;AO=38;CIGAR=1X;DP=56;DPB=56;DPRA=0;EPP=85.5263;EPPR=42.0968;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=1486;QR=706;RO=18;RPL=0;RPP=85.5263;RPPR=42.0968;RPR=38;RUN=1;SAF=38;SAP=85.5263;SAR=0;SRF=18;SRP=42.0968;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:24:4,20:4:153:20:804:-65.4519,0,-6.91499 0/1:10:7,3:7:280:3:119:-8.08471,0,-22.5604 0/1:22:7,15:7:273:15:563:-44.3719,0,-18.314 dDocent_Contig_7121 7 . T C 123.2 . AB=0.26087;ABP=14.4341;AC=1;AF=0.166667;AN=6;AO=9;CIGAR=1X;DP=78;DPB=78;DPRA=38.5;EPP=22.5536;EPPR=152.842;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=347;QR=2645;RO=69;RPL=0;RPP=22.5536;RPPR=152.842;RPR=9;RUN=1;SAF=9;SAP=22.5536;SAR=0;SRF=69;SRP=152.842;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:54:51,3:51:1948:3:117:0,-5.34524,-164.652 0/0:1:1,0:1:37:0:0:0,-0.30103,-3.69783 0/1:23:17,6:17:660:6:230:-14.1432,0,-52.8134 dDocent_Contig_7122 73 . C T 118.36 . AB=0.25;ABP=16.0391;AC=1;AF=0.166667;AN=6;AO=6;CIGAR=1X;DP=50;DPB=50;DPRA=1.84615;EPP=16.0391;EPPR=98.5551;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=228;QR=1679;RO=44;RPL=6;RPP=16.0391;RPPR=98.5551;RPR=0;RUN=1;SAF=6;SAP=16.0391;SAR=0;SRF=44;SRP=98.5551;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:23:23,0:23:869:0:0:0,-6.92369,-78.5266 0/0:3:3,0:3:118:0:0:0,-0.90309,-11.0027 0/1:24:18,6:18:692:6:228:-13.6598,0,-55.3883 dDocent_Contig_7124 25 . G T 787.234 . AB=0.2;ABP=14.7363;AC=1;AF=0.166667;AN=6;AO=3;CIGAR=1X1M1X;DP=77;DPB=77;DPRA=0;EPP=9.52472;EPPR=83.3548;GTI=0;LEN=1;MEANALT=2;MQM=60;MQMR=60;NS=3;NUMALT=3;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=115;QR=1447;RO=37;RPL=0;RPP=9.52472;RPPR=83.3548;RPR=3;RUN=1;SAF=3;SAP=9.52472;SAR=0;SRF=37;SRP=83.3548;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|0:42:24,0,13,5:24:940:0,13,5:0,513,197:-34.981,-42.2057,-119.49,0,-77.2844,-73.371,-25.9993,-103.284,-61.0774,-101.779 0|0:20:3,0,10,6:3:112:0,10,6:0,403,239:-42.8447,-43.7478,-52.9131,-10.5282,-19.6899,-16.6796,-24.0692,-33.2324,0,-31.4262 0|1:15:10,3,2,0:10:395:3,2,0:115,79,0:-6.42043,0,-31.5976,-2.9255,-26.0001,-34.833,-9.43073,-32.5007,-35.4351,-41.936 dDocent_Contig_7125 84 . T A 236.3 . AB=0.197674;ABP=71.2854;AC=2;AF=0.5;AN=4;AO=17;CIGAR=1X;DP=86;DPB=86;DPRA=0;EPP=39.9253;EPPR=152.842;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=2;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=584;QR=2413;RO=69;RPL=17;RPP=39.9253;RPPR=152.842;RPR=0;RUN=1;SAF=17;SAP=39.9253;SAR=0;SRF=69;SRP=152.842;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:60:49,11:49:1707:11:390:-17.3773,0,-135.852 ./.:.:.:.:.:.:.:. 0/1:26:20,6:20:706:6:194:-9.95164,0,-56.0381 dDocent_Contig_7126 92 . T A 279.584 . AB=0.361111;ABP=9.04217;AC=2;AF=0.333333;AN=6;AO=13;CIGAR=1X;DP=38;DPB=38;DPRA=9;EPP=31.2394;EPPR=57.2971;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=0;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=462;QR=878;RO=25;RPL=13;RPP=31.2394;RPPR=57.2971;RPR=0;RUN=1;SAF=13;SAP=31.2394;SAR=0;SRF=25;SRP=57.2971;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:22:11,11:11:390:11:392:-28.9977,0,-28.8164 0/0:2:2,0:2:70:0:0:0,-0.60206,-6.64733 0/1:14:12,2:12:418:2:70:-2.43291,0,-33.7395 dDocent_Contig_7127 83 . C T 716.202 . AB=0.54902;ABP=4.07475;AC=3;AF=0.5;AN=6;AO=28;CIGAR=1X;DP=51;DPB=51;DPRA=0;EPP=63.8115;EPPR=52.9542;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=1016;QR=838;RO=23;RPL=28;RPP=63.8115;RPPR=52.9542;RPR=0;RUN=1;SAF=28;SAP=63.8115;SAR=0;SRF=23;SRP=52.9542;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:33:16,17:16:586:17:612:-45.4766,0,-43.1423 0/1:2:1,1:1:38:1:35:-2.89657,0,-3.19521 0/1:16:6,10:6:214:10:369:-28.7432,0,-14.7912 dDocent_Contig_7129 21 . C A 1215.21 . AB=0.417476;ABP=9.10307;AC=2;AF=0.333333;AN=6;AO=43;CIGAR=2X;DP=113;DPB=113;DPRA=5.15;EPP=96.3836;EPPR=155.013;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=6.93889e-18;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=1727;QR=2769;RO=70;RPL=0;RPP=96.3836;RPPR=155.013;RPR=43;RUN=1;SAF=43;SAP=96.3836;SAR=0;SRF=70;SRP=155.013;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|1:73:40,33:40:1578:33:1328:-97.8051,0,-120.285 0|0:10:10,0:10:399:0:0:0,-3.0103,-36.2692 0|1:30:20,10:20:792:10:399:-27.2388,0,-62.5694 dDocent_Contig_7131 13 . G A 759.073 . AB=0.338235;ABP=18.4661;AC=2;AF=0.333333;AN=6;AO=23;CIGAR=1M2I3M2X;DP=68;DPB=75.6667;DPRA=0;EPP=52.9542;EPPR=65.983;GTI=0;LEN=1;MEANALT=2.66667;MQM=60;MQMR=60;NS=3;NUMALT=3;ODDS=1.38778e-17;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=901;QR=1129;RO=29;RPL=0;RPP=52.9542;RPPR=65.983;RPR=23;RUN=1;SAF=23;SAP=52.9542;SAR=0;SRF=29;SRP=65.983;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|1:39:20,13,2,4:20:778:13,2,4:512,78,164:-36.0934,0,-60.0102,-35.7032,-57.5121,-99.031,-28.5742,-50.384,-86.0946,-91.3021 1|0:7:0,6,0,1:0:0:6,0,1:232,0,40:-22.7377,-3.69465,-1.88847,-22.7377,-3.69465,-22.7377,-19.4407,0,-19.4407,-19.1397 0|0:22:9,4,0,8:9:351:4,0,8:157,0,306:-22.3879,-12.1818,-39.8339,-25.0972,-41.038,-53.9514,0,-15.939,-28.8523,-26.444 dDocent_Contig_7133 42 . A C 496.201 . AB=0.304348;ABP=25.9524;AC=3;AF=0.5;AN=6;AO=21;CIGAR=1X;DP=69;DPB=69;DPRA=0;EPP=48.6112;EPPR=107.241;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=830;QR=1848;RO=48;RPL=0;RPP=48.6112;RPPR=107.241;RPR=21;RUN=1;SAF=21;SAP=48.6112;SAR=0;SRF=48;SRP=107.241;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:45:28,17:28:1072:17:672:-47.2631,0,-83.2167 0/1:5:3,2:3:122:2:76:-5.70911,0,-9.86734 0/1:19:17,2:17:654:2:82:-2.06011,0,-53.4771 dDocent_Contig_7135 172 . T C 40.9259 . AB=0.114754;ABP=81.6461;AC=2;AF=0.333333;AN=6;AO=8;CIGAR=1X;DP=69;DPB=69;DPRA=0;EPP=20.3821;EPPR=135.47;GTI=0;LEN=1;MEANALT=1;MQM=53.625;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=0.875;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=317;QR=2369;RO=61;RPL=8;RPP=20.3821;RPPR=135.47;RPR=0;RUN=1;SAF=0;SAP=20.3821;SAR=8;SRF=0;SRP=135.47;SRR=61;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:35:31,4:31:1222:4:159:-4.15591,0,-99.7277 0/0:8:7,1:7:245:1:37:0,-1.50884,-21.4815 0/1:26:23,3:23:902:3:121:-3.45342,0,-73.6651 dDocent_Contig_7136 16 . T C 712.331 . AB=0.545455;ABP=3.79993;AC=2;AF=0.333333;AN=6;AO=24;CIGAR=1X;DP=48;DPB=48;DPRA=5.5;EPP=55.1256;EPPR=55.1256;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=970;QR=956;RO=24;RPL=0;RPP=55.1256;RPPR=55.1256;RPR=24;RUN=1;SAF=24;SAP=55.1256;SAR=0;SRF=24;SRP=55.1256;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:29:15,14:15:593:14:566:-42.5531,0,-44.975 0/0:4:4,0:4:162:0:0:0,-1.20412,-14.967 0/1:15:5,10:5:201:10:404:-32.2028,0,-13.9551 dDocent_Contig_7137 53 . T A 561.643 . AB=0.465116;ABP=3.46479;AC=2;AF=0.333333;AN=6;AO=20;CIGAR=1X;DP=46;DPB=46;DPRA=7.16667;EPP=46.4397;EPPR=59.4686;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=799;QR=1024;RO=26;RPL=20;RPP=46.4397;RPPR=59.4686;RPR=0;RUN=1;SAF=20;SAP=46.4397;SAR=0;SRF=26;SRP=59.4686;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:12:8,4:8:314:4:164:-11.5375,0,-25.0093 0/0:3:3,0:3:104:0:0:0,-0.90309,-9.69829 0/1:31:15,16:15:606:16:635:-48.1494,0,-45.5454 dDocent_Contig_7138 43 . T C 139.457 . AB=0.363636;ABP=4.78696;AC=3;AF=0.5;AN=6;AO=5;CIGAR=1X3M1X;DP=17;DPB=17;DPRA=1.2;EPP=13.8677;EPPR=29.068;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=200;QR=471;RO=12;RPL=0;RPP=13.8677;RPPR=29.068;RPR=5;RUN=1;SAF=5;SAP=13.8677;SAR=0;SRF=12;SRP=29.068;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|1:11:7,4:7:279:4:160:-11.4721,0,-22.1702 0|0:5:5,0:5:192:0:0:0,-1.50515,-17.6484 1|1:1:0,1:0:0:1:40:-3.99568,-0.30103,0 dDocent_Contig_7139 107 . N T 41.3189 . AB=0;ABP=0;AC=4;AF=1;AN=4;AO=6;CIGAR=1X;DP=6;DPB=6;DPRA=0;EPP=16.0391;EPPR=0;GTI=0;LEN=1;MEANALT=1;MQM=6.83333;MQMR=0;NS=2;NUMALT=1;ODDS=0;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=197;QR=0;RO=0;RPL=0;RPP=16.0391;RPPR=0;RPR=6;RUN=1;SAF=0;SAP=16.0391;SAR=6;SRF=0;SRP=0;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL ./.:.:.:.:.:.:.:. 1/1:4:0,4:0:0:4:129:-2.58328,-1.20412,0 1/1:2:0,2:0:0:2:68:-1.23385,-0.60206,0 dDocent_Contig_7140 7 . T C 196.071 . AB=0.2;ABP=42.0968;AC=4;AF=0.666667;AN=6;AO=15;CIGAR=2X5M;DP=55;DPB=55;DPRA=0;EPP=35.5824;EPPR=42.0968;GTI=0;LEN=1;MEANALT=1.66667;MQM=26.4667;MQMR=60;NS=3;NUMALT=2;ODDS=0;PAIRED=0;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=387;QR=687;RO=18;RPL=0;RPP=35.5824;RPPR=42.0968;RPR=15;RUN=1;SAF=15;SAP=35.5824;SAR=0;SRF=18;SRP=42.0968;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|1:28:10,14,4:10:387:14,4:546,127:-6.44457,-7.01809,-34.6598,0,-29.4991,-30.7248 1|1:5:0,0,5:0:0:0,5:0,112:-8.94593,-8.94593,-8.94593,-1.50515,-1.50515,0 0|1:22:8,8,6:8:300:8,6:309,148:-7.73943,-9.05407,-31.3023,0,-23.702,-22.9242 dDocent_Contig_7141 22 . C A 119.046 . AB=0.214286;ABP=22.8638;AC=1;AF=0.166667;AN=6;AO=9;CIGAR=1X;DP=86;DPB=86;DPRA=2.57143;EPP=22.5536;EPPR=170.214;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=0.948052;PAO=0;PQA=0;PQR=0;PRO=0;QA=348;QR=3107;RO=77;RPL=0;RPP=22.5536;RPPR=170.214;RPR=9;RUN=1;SAF=9;SAP=22.5536;SAR=0;SRF=77;SRP=170.214;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:44:41,3:41:1639:3:106:0,-3.36122,-137.857 0/0:14:14,0:14:571:0:0:0,-4.21442,-51.7319 0/1:28:22,6:22:897:6:242:-13.7285,0,-72.6058 dDocent_Contig_7143 16 . A C 135.775 . AB=0.222222;ABP=27.1378;AC=3;AF=0.5;AN=6;AO=8;CIGAR=1X;DP=36;DPB=36;DPRA=0;EPP=20.3821;EPPR=63.8115;GTI=0;LEN=1;MEANALT=1;MQM=48.75;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=324;QR=1121;RO=28;RPL=0;RPP=20.3821;RPPR=63.8115;RPR=8;RUN=1;SAF=8;SAP=20.3821;SAR=0;SRF=28;SRP=63.8115;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:12:10,2:10:404:2:81:-3.97303,0,-33.1077 0/1:8:4,4:4:162:4:163:-12.4134,0,-12.5585 0/1:16:14,2:14:555:2:80:-2.68351,0,-45.474 dDocent_Contig_7144 9 . G A 31.7162 . AB=0.25;ABP=7.35324;AC=1;AF=0.166667;AN=6;AO=4;CIGAR=1X;DP=219;DPB=219;DPRA=1.73469;EPP=11.6962;EPPR=469.877;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=156;QR=8251;RO=215;RPL=0;RPP=11.6962;RPPR=469.877;RPR=4;RUN=1;SAF=4;SAP=11.6962;SAR=0;SRF=215;SRP=469.877;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:162:160,2:160:6154:2:78:0,-41.3634,-546.387 0/1:8:6,2:6:228:2:78:-4.99523,0,-18.476 0/0:49:49,0:49:1869:0:0:0,-14.7505,-168.459 dDocent_Contig_7145 13 . T C 274.358 . AB=0.188406;ABP=61.1995;AC=1;AF=0.166667;AN=6;AO=14;CIGAR=1M1X2M;DP=90;DPB=86;DPRA=22;EPP=33.4109;EPPR=148.499;GTI=0;LEN=1;MEANALT=2;MQM=60;MQMR=60;NS=3;NUMALT=2;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=563;QR=2652;RO=67;RPL=0;RPP=33.4109;RPPR=148.499;RPR=14;RUN=1;SAF=14;SAP=33.4109;SAR=0;SRF=67;SRP=148.499;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|1:69:47,8,13:47:1858:8,13:310,523:-28.958,-17.6491,-168.136,0,-127.443,-148.992 0|0:2:2,0,0:2:80:0,0:0,0:0,-0.60206,-7.59179,-0.60206,-7.59179,-7.59179 0|0:19:18,0,1:18:714:0,1:0,40:0,-5.41854,-64.1912,-1.72389,-60.8959,-60.5949 dDocent_Contig_7147 16 . G A 30.6756 . AB=0.15;ABP=24.2907;AC=2;AF=0.333333;AN=6;AO=3;CIGAR=1X;DP=24;DPB=24;DPRA=2.5;EPP=9.52472;EPPR=48.6112;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=0;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=121;QR=836;RO=21;RPL=0;RPP=9.52472;RPPR=48.6112;RPR=3;RUN=1;SAF=3;SAP=9.52472;SAR=0;SRF=21;SRP=48.6112;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:11:10,1:10:395:1:41:-0.783237,0,-32.5944 0/0:4:4,0:4:156:0:0:0,-1.20412,-14.4162 0/1:9:7,2:7:285:2:80:-4.8823,0,-23.3151 dDocent_Contig_7148 9 . G T 90.0275 . AB=0.238095;ABP=15.5221;AC=2;AF=0.333333;AN=6;AO=5;CIGAR=1X;DP=36;DPB=36;DPRA=0.7;EPP=13.8677;EPPR=70.3259;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=195;QR=1167;RO=31;RPL=0;RPP=13.8677;RPPR=70.3259;RPR=5;RUN=1;SAF=5;SAP=13.8677;SAR=0;SRF=31;SRP=70.3259;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:15:15,0:15:577:0:0:0,-4.51545,-52.2714 0/1:9:8,1:8:290:1:39:-1.18729,0,-23.7325 0/1:12:8,4:8:300:4:156:-10.8049,0,-23.7421 dDocent_Contig_7149 32 . A C 910.539 . AB=0.595745;ABP=6.75262;AC=4;AF=0.666667;AN=6;AO=30;CIGAR=1X;DP=49;DPB=49;DPRA=0;EPP=68.1545;EPPR=44.2683;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=1197;QR=762;RO=19;RPL=0;RPP=68.1545;RPPR=44.2683;RPR=30;RUN=1;SAF=30;SAP=68.1545;SAR=0;SRF=19;SRP=44.2683;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:37:12,25:12:479:25:1020:-80.9519,0,-32.3227 0/1:10:7,3:7:283:3:98:-6.12724,0,-22.8331 1/1:2:0,2:0:0:2:79:-7.49724,-0.60206,0 dDocent_Contig_7150 34 . A G 33.9155 . AB=0.121951;ABP=53.9075;AC=1;AF=0.166667;AN=6;AO=5;CIGAR=1X;DP=86;DPB=86;DPRA=1.82222;EPP=13.8677;EPPR=178.9;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=191;QR=3228;RO=81;RPL=0;RPP=13.8677;RPPR=178.9;RPR=5;RUN=1;SAF=5;SAP=13.8677;SAR=0;SRF=81;SRP=178.9;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:36:36,0:36:1431:0:0:0,-10.8371,-129.035 0/0:9:9,0:9:352:0:0:0,-2.70927,-32.0373 0/1:41:36,5:36:1445:5:191:-5.21528,0,-117.957 dDocent_Contig_7151 44 . C A 2265.31 . AB=0.598425;ABP=13.6967;AC=3;AF=0.5;AN=6;AO=76;CIGAR=1X3M;DP=127;DPB=127;DPRA=0;EPP=168.042;EPPR=109.412;GTI=0;LEN=1;MEANALT=1.33333;MQM=60;MQMR=60;NS=3;NUMALT=2;ODDS=6.93889e-18;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=2991;QR=1903;RO=49;RPL=0;RPP=168.042;RPPR=109.412;RPR=76;RUN=1;SAF=76;SAP=168.042;SAR=0;SRF=49;SRP=109.412;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|1:70:34,0,36:34:1338:0,36:0,1431:-107.973,-118.208,-228.27,0,-110.457,-99.6198 0|1:22:3,0,19:3:105:0,19:0,760:-62.0982,-63.0013,-71.536,0,-8.89136,-3.17179 0|1:35:12,2,21:12:460:2,21:78,800:-61.9727,-59.1726,-96.3208,0,-31.331,-31.4219 dDocent_Contig_7153 91 . T C 1235.31 . AB=0.596774;ABP=8.05372;AC=4;AF=0.666667;AN=6;AO=47;CIGAR=1X;DP=73;DPB=73;DPRA=0;EPP=105.07;EPPR=59.4686;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=1637;QR=872;RO=26;RPL=47;RPP=105.07;RPPR=59.4686;RPR=0;RUN=1;SAF=47;SAP=105.07;SAR=0;SRF=26;SRP=59.4686;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:35:11,24:11:394:24:823:-63.8463,0,-25.2655 1/1:11:1,10:1:26:10:352:-29.4186,-0.711502,0 0/1:27:14,13:14:452:13:462:-33.7891,0,-32.8596 dDocent_Contig_7154 9 . G A 77.0583 . AB=0.0882353;ABP=53.0819;AC=0;AF=0;AN=4;AO=3;CIGAR=1X1M1X6M1X;DP=55;DPB=55;DPRA=0;EPP=9.52472;EPPR=92.0407;GTI=0;LEN=1;MEANALT=3;MQM=16;MQMR=60;NS=2;NUMALT=3;ODDS=0;PAIRED=0;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=48;QR=1589;RO=41;RPL=0;RPP=9.52472;RPPR=92.0407;RPR=3;RUN=1;SAF=0;SAP=9.52472;SAR=3;SRF=41;SRP=92.0407;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|0:34:24,3,3,4:24:931:3,3,4:48,110,161:-6.15279,-10.805,-86.47,-10.8228,-84.7968,-86.4875,0,-74.0988,-74.1163,-75.4908 .:.:.:.:.:.:.:. 0|0:21:17,0,1,3:17:658:0,1,3:0,40,123:-5.25187,-10.3694,-64.4556,-9.66337,-63.69,-63.389,0,-54.2979,-53.5344,-53.3949 dDocent_Contig_7155 8 . T C 1607.35 . AB=0.5;ABP=3.0103;AC=4;AF=0.666667;AN=6;AO=56;CIGAR=1X;DP=108;DPB=108;DPRA=0;EPP=124.613;EPPR=115.927;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=2162;QR=1997;RO=52;RPL=0;RPP=124.613;RPPR=115.927;RPR=56;RUN=1;SAF=56;SAP=124.613;SAR=0;SRF=52;SRP=115.927;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:86:42,44:42:1609:44:1707:-127.998,0,-119.186 1/1:4:0,4:0:0:4:152:-14.0496,-1.20412,0 0/1:18:10,8:10:388:8:303:-22.21,0,-29.8595 dDocent_Contig_7156 9 . G A 51.1395 . AB=0.128205;ABP=96.662;AC=2;AF=0.333333;AN=6;AO=10;CIGAR=1X;DP=212;DPB=212;DPRA=0.291045;EPP=24.725;EPPR=441.648;GTI=0;LEN=1;MEANALT=1;MQM=49.4;MQMR=54.3416;NS=3;NUMALT=1;ODDS=0;PAIRED=0.7;PAIREDR=0.777228;PAO=0;PQA=0;PQR=0;PRO=0;QA=354;QR=7729;RO=202;RPL=0;RPP=24.725;RPPR=441.648;RPR=10;RUN=1;SAF=10;SAP=24.725;SAR=0;SRF=202;SRP=441.648;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:134:134,0:134:5144:0:0:0,-40.338,-456.666 0/1:15:11,4:11:419:4:124:-6.83965,0,-33.4589 0/1:63:57,6:57:2166:6:230:-1.8815,0,-175.765 dDocent_Contig_7157 26 . G C 249.527 . AB=0.473684;ABP=3.12459;AC=1;AF=0.25;AN=4;AO=9;CIGAR=1X;DP=43;DPB=43;DPRA=0.791667;EPP=22.5536;EPPR=76.8404;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=2;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=359;QR=1360;RO=34;RPL=0;RPP=22.5536;RPPR=76.8404;RPR=9;RUN=1;SAF=9;SAP=22.5536;SAR=0;SRF=34;SRP=76.8404;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:24:24,0:24:971:0:0:0,-7.22472,-87.6884 ./.:.:.:.:.:.:.:. 0/1:19:10,9:10:389:9:359:-26.9527,0,-29.6379 dDocent_Contig_7158 77 . G A 33.9597 . AB=0.333333;ABP=4.45795;AC=1;AF=0.166667;AN=6;AO=2;CIGAR=2X;DP=37;DPB=37;DPRA=0.387097;EPP=7.35324;EPPR=79.0118;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=74;QR=1256;RO=35;RPL=2;RPP=7.35324;RPPR=79.0118;RPR=0;RUN=1;SAF=2;SAP=7.35324;SAR=0;SRF=35;SRP=79.0118;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|0:23:23,0:23:829:0:0:0,-6.92369,-74.9315 0|0:8:8,0:8:283:0:0:0,-2.40824,-25.8124 0|1:6:4,2:4:144:2:74:-5.2197,0,-11.5074 dDocent_Contig_7160 20 . T C 312.728 . AB=0.333333;ABP=12.42;AC=2;AF=0.333333;AN=6;AO=15;CIGAR=1X;DP=97;DPB=97;DPRA=0;EPP=35.5824;EPPR=181.071;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=3.46945e-18;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=587;QR=3200;RO=82;RPL=0;RPP=35.5824;RPPR=181.071;RPR=15;RUN=1;SAF=15;SAP=35.5824;SAR=0;SRF=82;SRP=181.071;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:58:56,2:56:2200:2:78:0,-10.0564,-190.786 0/1:18:13,5:13:505:5:192:-12.2262,0,-40.3762 0/1:21:13,8:13:495:8:317:-22.5695,0,-38.5714 dDocent_Contig_7161 19 . G A 55.5165 . AB=0.166667;ABP=26.1727;AC=1;AF=0.166667;AN=6;AO=4;CIGAR=1X;DP=79;DPB=79;DPRA=0.872727;EPP=11.6962;EPPR=165.871;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=158;QR=2992;RO=75;RPL=0;RPP=11.6962;RPPR=165.871;RPR=4;RUN=1;SAF=4;SAP=11.6962;SAR=0;SRF=75;SRP=165.871;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:43:43,0:43:1728:0:0:0,-12.9443,-155.741 0/0:12:12,0:12:473:0:0:0,-3.61236,-42.9177 0/1:24:20,4:20:791:4:158:-7.37555,0,-64.276 dDocent_Contig_7162 132 . A G 301.142 . AB=0.333333;ABP=11.6962;AC=1;AF=0.25;AN=4;AO=12;CIGAR=1X;DP=54;DPB=54;DPRA=2;EPP=29.068;EPPR=94.2121;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=2;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=470;QR=1560;RO=42;RPL=0;RPP=29.068;RPPR=94.2121;RPR=12;RUN=1;SAF=0;SAP=29.068;SAR=12;SRF=0;SRP=94.2121;SRR=42;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:36:24,12:24:868:12:470:-31.8132,0,-67.5868 ./.:.:.:.:.:.:.:. 0/0:18:18,0:18:692:0:0:0,-5.41854,-62.6108 dDocent_Contig_7163 196 . C T 79.8316 . AB=0.227273;ABP=17.2236;AC=2;AF=0.333333;AN=6;AO=5;CIGAR=1X;DP=25;DPB=25;DPRA=3.66667;EPP=13.8677;EPPR=46.4397;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=193;QR=740;RO=20;RPL=5;RPP=13.8677;RPPR=46.4397;RPR=0;RUN=1;SAF=0;SAP=13.8677;SAR=5;SRF=0;SRP=46.4397;SRR=20;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:3:3,0:3:115:0:0:0,-0.90309,-10.7249 0/1:8:6,2:6:234:2:78:-4.99523,0,-19.0229 0/1:14:11,3:11:391:3:115:-6.51047,0,-31.3034 dDocent_Contig_7164 141 . T G 69.7387 . AB=0.285714;ABP=8.59409;AC=2;AF=0.333333;AN=6;AO=4;CIGAR=1X;DP=26;DPB=26;DPRA=0.583333;EPP=11.6962;EPPR=50.7827;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=0;PAIREDR=0.863636;PAO=0;PQA=0;PQR=0;PRO=0;QA=155;QR=862;RO=22;RPL=0;RPP=11.6962;RPPR=50.7827;RPR=4;RUN=1;SAF=0;SAP=11.6962;SAR=4;SRF=0;SRP=50.7827;SRR=22;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:12:12,0:12:482:0:0:0,-3.61236,-43.7309 0/1:6:4,2:4:137:2:77:-5.50202,0,-10.8593 0/1:8:6,2:6:243:2:78:-4.99454,0,-19.8399 dDocent_Contig_7167 15 . T C 131.377 . AB=0.263158;ABP=12.2676;AC=1;AF=0.25;AN=4;AO=5;CIGAR=5M1I1M1X1M1X2M;DP=31;DPB=32.0909;DPRA=0;EPP=13.8677;EPPR=42.0968;GTI=0;LEN=1;MEANALT=3;MQM=60;MQMR=60;NS=2;NUMALT=3;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=201;QR=690;RO=18;RPL=0;RPP=13.8677;RPPR=42.0968;RPR=5;RUN=1;SAF=5;SAP=13.8677;SAR=0;SRF=18;SRP=42.0968;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|1:19:10,0,3,5:10:379:0,3,5:0,104,201:-13.5802,-16.5905,-47.6615,-8.17559,-39.2355,-38.3324,0,-31.0894,-22.6642,-29.5843 .:.:.:.:.:.:.:. 0|0:12:8,2,0,0:8:311:2,0,0:69,0,0:-3.24425,0,-25.0646,-5.65249,-25.6666,-31.269,-5.65249,-25.6666,-31.269,-31.269 dDocent_Contig_7168 78 . A G 50.0828 . AB=0.190476;ABP=20.4855;AC=1;AF=0.166667;AN=6;AO=4;CIGAR=1X;DP=32;DPB=32;DPRA=3.81818;EPP=11.6962;EPPR=63.8115;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=0.964286;PAO=0;PQA=0;PQR=0;PRO=0;QA=139;QR=1018;RO=28;RPL=4;RPP=11.6962;RPPR=63.8115;RPR=0;RUN=1;SAF=4;SAP=11.6962;SAR=0;SRF=28;SRP=63.8115;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:21:17,4:17:624:4:139:-6.53079,0,-50.1738 0/0:2:2,0:2:78:0:0:0,-0.60206,-7.40347 0/0:9:9,0:9:316:0:0:0,-2.70927,-28.7766 dDocent_Contig_7169 9 . G A 229.749 . AB=0.135484;ABP=181.898;AC=2;AF=0.333333;AN=6;AO=22;CIGAR=1X;DP=176;DPB=176;DPRA=0;EPP=50.7827;EPPR=337.417;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=6.93889e-18;PAIRED=1;PAIREDR=0.987013;PAO=0;PQA=0;PQR=0;PRO=0;QA=843;QR=5937;RO=154;RPL=0;RPP=50.7827;RPPR=337.417;RPR=22;RUN=1;SAF=22;SAP=50.7827;SAR=0;SRF=154;SRP=337.417;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:97:83,14:83:3189:14:537:-19.4741,0,-257.96 0/0:21:20,1:20:776:1:38:0,-2.52436,-66.3711 0/1:58:51,7:51:1972:7:268:-7.02366,0,-160.259 dDocent_Contig_7171 24 . C T 369.121 . AB=0.451613;ABP=3.64073;AC=3;AF=0.5;AN=6;AO=14;CIGAR=1X;DP=31;DPB=31;DPRA=0;EPP=33.4109;EPPR=39.9253;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=0.857143;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=562;QR=675;RO=17;RPL=0;RPP=33.4109;RPPR=39.9253;RPR=14;RUN=1;SAF=14;SAP=33.4109;SAR=0;SRF=17;SRP=39.9253;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:12:6,6:6:244:6:238:-18.1807,0,-18.7263 0/1:5:4,1:4:156:1:41:-2.58942,0,-12.909 0/1:14:7,7:7:275:7:283:-21.6292,0,-20.9002 dDocent_Contig_7173 13 . C A 1575.29 . AB=0.45082;ABP=5.57335;AC=3;AF=0.5;AN=6;AO=55;CIGAR=1X;DP=122;DPB=122;DPRA=0;EPP=122.441;EPPR=131.646;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=59.791;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=0.925373;PAO=0;PQA=0;PQR=0;PRO=0;QA=2209;QR=2718;RO=67;RPL=0;RPP=122.441;RPPR=148.499;RPR=55;RUN=1;SAF=55;SAP=122.441;SAR=0;SRF=65;SRP=131.646;SRR=2;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:67:34,33:34:1374:33:1332:-99.9708,0,-103.744 0/1:13:9,4:9:367:4:159:-10.7781,0,-29.3781 0/1:42:24,18:24:977:18:718:-52.3028,0,-75.5813 dDocent_Contig_7174 10 . T C 1308.03 . AB=0.0612245;ABP=84.9501;AC=3;AF=0.5;AN=6;AO=3;CIGAR=1X9M;DP=100;DPB=100;DPRA=0;EPP=9.52472;EPPR=83.3548;GTI=0;LEN=1;MEANALT=3;MQM=60;MQMR=60;NS=3;NUMALT=4;ODDS=1.38778e-17;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=123;QR=1463;RO=37;RPL=0;RPP=9.52472;RPPR=83.3548;RPR=3;RUN=1;SAF=3;SAP=9.52472;SAR=0;SRF=37;SRP=83.3548;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|1:49:15,0,21,10,3:15:593:0,21,10,3:0,811,377,123:-62.0857,-66.6012,-115.406,0,-48.8072,-42.4856,-35.7139,-84.5178,-17.9238,-81.5075,-56.4466,-105.252,-38.6526,-74.364,-104.349 0|1:22:4,1,17,0,0:4:154:1,17,0,0:40,668,0,0:-53.7318,-51.6404,-63.9811,0,-9.33323,-7.51379,-54.9359,-64.2822,-12.6313,-67.5776,-54.9359,-64.2822,-12.6313,-67.5776,-67.5776 0|1:29:18,2,8,1,0:18:716:2,8,1,0:73,315,39,0:-20.5088,-19.9692,-78.3235,0,-53.014,-56.566,-22.7213,-75.7199,-55.7686,-81.3799,-25.9273,-78.9255,-58.9742,-81.6809,-84.8866 dDocent_Contig_7175 8 . T G 61.9187 . AB=0.333333;ABP=5.18177;AC=1;AF=0.166667;AN=6;AO=4;CIGAR=1M1I2M1X;DP=60;DPB=61;DPRA=0.4375;EPP=11.6962;EPPR=124.613;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=59.4643;NS=3;NUMALT=1;ODDS=0;PAIRED=0;PAIREDR=0.839286;PAO=0;PQA=0;PQR=0;PRO=0;QA=154;QR=2139;RO=56;RPL=0;RPP=11.6962;RPPR=124.613;RPR=4;RUN=1;SAF=4;SAP=11.6962;SAR=0;SRF=56;SRP=124.613;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|0:32:32,0:32:1218:0:0:0,-9.63296,-109.916 0|1:9:6,3:6:231:3:115:-8.01576,0,-18.4367 0|0:19:18,1:18:690:1:39:0,-1.82301,-58.4884 dDocent_Contig_7176 20 . A C 90.6862 . AB=0.117647;ABP=110.945;AC=1;AF=0.166667;AN=6;AO=10;CIGAR=1X;DP=108;DPB=108;DPRA=7.3913;EPP=24.725;EPPR=215.815;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=0;PAIREDR=0.173469;PAO=0;PQA=0;PQR=0;PRO=0;QA=398;QR=3802;RO=98;RPL=0;RPP=24.725;RPPR=215.815;RPR=10;RUN=1;SAF=10;SAP=24.725;SAR=0;SRF=98;SRP=215.815;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:85:75,10:75:2892:10:398:-10.5915,0,-234.813 0/0:5:5,0:5:197:0:0:0,-1.50515,-18.1064 0/0:18:18,0:18:713:0:0:0,-5.41854,-64.4994 dDocent_Contig_7177 25 . G C 58.7299 . AB=0.131579;ABP=47.8112;AC=1;AF=0.166667;AN=6;AO=5;CIGAR=1X;DP=63;DPB=63;DPRA=3.04;EPP=13.8677;EPPR=128.956;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=205;QR=2307;RO=58;RPL=0;RPP=13.8677;RPPR=128.956;RPR=5;RUN=1;SAF=5;SAP=13.8677;SAR=0;SRF=58;SRP=128.956;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:38:33,5:33:1325:5:205:-7.39587,0,-108.075 0/0:9:9,0:9:347:0:0:0,-2.70927,-31.5855 0/0:16:16,0:16:635:0:0:0,-4.81648,-57.4842 dDocent_Contig_7178 9 . C A 48.062 . AB=0.135135;ABP=45.7942;AC=1;AF=0.166667;AN=6;AO=5;CIGAR=1X;DP=70;DPB=70;DPRA=2.24242;EPP=13.8677;EPPR=144.156;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=59.1077;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=0.538462;PAO=0;PQA=0;PQR=0;PRO=0;QA=190;QR=2499;RO=65;RPL=0;RPP=13.8677;RPPR=144.156;RPR=5;RUN=1;SAF=5;SAP=13.8677;SAR=0;SRF=65;SRP=144.156;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:37:32,5:32:1236:5:190:-6.32906,0,-99.8279 0/0:8:8,0:8:301:0:0:0,-2.40824,-27.446 0/0:25:25,0:25:962:0:0:0,-7.52575,-86.576 dDocent_Contig_7179 126 . C T 73.8342 . AB=0.25;ABP=13.8677;AC=1;AF=0.166667;AN=6;AO=5;CIGAR=1X2M1X4M;DP=30;DPB=30;DPRA=1;EPP=13.8677;EPPR=50.7827;GTI=0;LEN=1;MEANALT=2;MQM=60;MQMR=60;NS=3;NUMALT=2;ODDS=3.46945e-18;PAIRED=0;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=176;QR=787;RO=22;RPL=0;RPP=13.8677;RPPR=50.7827;RPR=5;RUN=1;SAF=0;SAP=13.8677;SAR=5;SRF=0;SRP=50.7827;SRR=22;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|0:14:10,2,2:10:354:2,2:72,73:-2.95662,-0.0945766,-28.3181,0,-22.9539,-28.2277 0|0:10:10,0,0:10:359:0,0:0,0:0,-3.0103,-32.6521,-3.0103,-32.6521,-32.6521 0|1:6:2,3,1:2:74:3,1:104,37:-7.8339,0,-5.15094,-5.40313,-3.02702,-11.1654 dDocent_Contig_7180 107 . N C 228.58 . AB=0;ABP=0;AC=4;AF=1;AN=4;AO=7;CIGAR=1X;DP=7;DPB=7;DPRA=0;EPP=18.2106;EPPR=0;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=0;NS=2;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=243;QR=0;RO=0;RPL=0;RPP=18.2106;RPPR=0;RPR=7;RUN=1;SAF=0;SAP=18.2106;SAR=7;SRF=0;SRP=0;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 1/1:3:0,3:0:0:3:105:-9.79616,-0.90309,0 1/1:4:0,4:0:0:4:138:-12.7604,-1.20412,0 ./.:.:.:.:.:.:.:. dDocent_Contig_7181 11 . T C 1936.21 . AB=0.367568;ABP=31.1925;AC=3;AF=0.5;AN=6;AO=68;CIGAR=1X2M1X3M;DP=185;DPB=180.143;DPRA=0;EPP=150.67;EPPR=181.071;GTI=0;LEN=1;MEANALT=2;MQM=60;MQMR=60;NS=3;NUMALT=2;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=2713;QR=3236;RO=82;RPL=0;RPP=150.67;RPPR=181.071;RPR=68;RUN=1;SAF=68;SAP=150.67;SAR=0;SRF=82;SRP=181.071;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|1:155:65,33,56:65:2563:33,56:1326,2239:-164.852,-75.1478,-276.07,0,-101.581,-193.996 0|1:8:2,1,5:2:81:1,5:38,194:-15.3432,-12.8301,-19.213,0,-3.58744,-5.19054 0|1:22:15,0,7:15:592:0,7:0,280:-18.9489,-23.4643,-72.171,0,-49.1045,-46.9973 dDocent_Contig_7183 9 . C T 226.96 . AB=0.1875;ABP=70.8688;AC=3;AF=0.5;AN=6;AO=15;CIGAR=1X;DP=80;DPB=80;DPRA=0;EPP=35.5824;EPPR=144.156;GTI=0;LEN=1;MEANALT=1;MQM=57.2;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=0;PAIREDR=0.953846;PAO=0;PQA=0;PQR=0;PRO=0;QA=564;QR=2491;RO=65;RPL=0;RPP=35.5824;RPPR=144.156;RPR=15;RUN=1;SAF=15;SAP=35.5824;SAR=0;SRF=65;SRP=144.156;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:44:34,10:34:1295:10:378:-21.0744,0,-103.592 0/1:17:15,2:15:574:2:70:-1.52783,0,-46.8833 0/1:19:16,3:16:622:3:116:-5.09813,0,-50.6005 dDocent_Contig_7184 40 . T C 71.4152 . AB=0.375;ABP=4.09604;AC=1;AF=0.166667;AN=6;AO=14;CIGAR=1X1M1X;DP=152;DPB=152;DPRA=0;EPP=33.4109;EPPR=302.673;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=555;QR=5502;RO=138;RPL=0;RPP=33.4109;RPPR=302.673;RPR=14;RUN=1;SAF=14;SAP=33.4109;SAR=0;SRF=138;SRP=302.673;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|0:86:80,6:80:3192:6:244:0,-3.54975,-265.013 0|1:8:5,3:5:200:3:122:-8.96425,0,-15.9713 0|0:58:53,5:53:2110:5:189:0,-0.0908678,-172.716 dDocent_Contig_7185 21 . G A 6606.6 . AB=0.11985;ABP=338.157;AC=2;AF=0.333333;AN=6;AO=32;CIGAR=1X3M1I2M;DP=267;DPB=307.333;DPRA=0;EPP=72.4974;EPPR=57.2971;GTI=0;LEN=1;MEANALT=2.66667;MQM=59.875;MQMR=60;NS=3;NUMALT=2;ODDS=0;PAIRED=0.75;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=1180;QR=970;RO=25;RPL=0;RPP=72.4974;RPPR=57.2971;RPR=32;RUN=1;SAF=32;SAP=72.4974;SAR=0;SRF=25;SRP=57.2971;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 1|0:132:13,16,103:13:504:16,103:591,4003:-331.913,-287.487,-324.075,-6.91905,0,-17.3253 1|0:60:0,7,51:0:0:7,51:256,1914:-177.756,-156.839,-154.732,-20.9761,0,-5.6236 0|0:75:12,9,52:12:466:9,52:333,1955:-156.515,-132.885,-168.469,0,-11.0622,-22.6443 dDocent_Contig_7186 10 . T G 1396.92 . AB=0.45045;ABP=5.3774;AC=2;AF=0.333333;AN=6;AO=50;CIGAR=1X;DP=117;DPB=117;DPRA=9.25;EPP=111.584;EPPR=148.499;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=1956;QR=2675;RO=67;RPL=0;RPP=111.584;RPPR=148.499;RPR=50;RUN=1;SAF=50;SAP=111.584;SAR=0;SRF=67;SRP=148.499;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:71:39,32:39:1569:32:1237:-90.2215,0,-120.07 0/0:6:6,0:6:244:0:0:0,-1.80618,-22.3388 0/1:40:22,18:22:862:18:719:-52.9935,0,-65.8474 dDocent_Contig_7187 161 . A T 391.901 . AB=0.257143;ABP=38.8706;AC=3;AF=0.5;AN=6;AO=18;CIGAR=1X;DP=70;DPB=70;DPRA=0;EPP=42.0968;EPPR=115.927;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=718;QR=2073;RO=52;RPL=18;RPP=42.0968;RPPR=115.927;RPR=0;RUN=1;SAF=0;SAP=42.0968;SAR=18;SRF=0;SRP=115.927;SRR=52;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:44:35,9:35:1405:9:359:-19.4278,0,-113.461 0/1:5:1,4:1:40:4:155:-12.8183,0,-2.49053 0/1:21:16,5:16:628:5:204:-12.4224,0,-50.5247 dDocent_Contig_7188 12 . C T 156.515 . AB=0.233333;ABP=21.5402;AC=1;AF=0.166667;AN=6;AO=7;CIGAR=1X;DP=43;DPB=43;DPRA=4.61538;EPP=18.2106;EPPR=81.1833;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=287;QR=1430;RO=36;RPL=0;RPP=18.2106;RPPR=81.1833;RPR=7;RUN=1;SAF=7;SAP=18.2106;SAR=0;SRF=36;SRP=81.1833;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:30:23,7:23:908:7:287:-17.1743,0,-72.9832 0/0:8:8,0:8:320:0:0:0,-2.40824,-29.1668 0/0:5:5,0:5:202:0:0:0,-1.50515,-18.5615 dDocent_Contig_7189 12 . C T 2023.33 . AB=0.043956;ABP=167.398;AC=0;AF=0;AN=6;AO=4;CIGAR=1X2M1X2M1X2M;DP=144;DPB=145.333;DPRA=0;EPP=11.6962;EPPR=122.441;GTI=0;LEN=1;MEANALT=4;MQM=29;MQMR=60;NS=3;NUMALT=3;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=102;QR=2137;RO=55;RPL=0;RPP=11.6962;RPPR=122.441;RPR=4;RUN=1;SAF=4;SAP=11.6962;SAR=0;SRF=55;SRP=122.441;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|0:53:18,0,0,35:18:696:0,0,35:0,0,1319:-99.3865,-104.805,-161.971,-104.805,-161.971,-161.971,0,-57.5455,-57.5455,-47.0094 0|0:40:13,0,3,21:13:509:0,3,21:0,72,777:-57.9906,-61.904,-103.773,-57.1539,-99.0182,-98.1151,0,-41.9357,-37.196,-35.6141 0|0:51:24,4,1,20:24:932:4,1,20:152,30,732:-50.4785,-45.2715,-120.676,-55.3209,-119.497,-131.622,0,-64.2347,-74.2795,-70.6405 dDocent_Contig_7190 94 . T C 1124.44 . AB=0.418033;ABP=10.1299;AC=3;AF=0.5;AN=6;AO=51;CIGAR=1X;DP=122;DPB=122;DPRA=0;EPP=113.755;EPPR=157.185;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=1708;QR=2445;RO=71;RPL=51;RPP=113.755;RPPR=157.185;RPR=0;RUN=1;SAF=51;SAP=113.755;SAR=0;SRF=71;SRP=157.185;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:87:46,41:46:1596:41:1359:-96.4066,0,-117.743 0/1:7:3,4:3:105:4:140:-10.8377,0,-7.68895 0/1:28:22,6:22:744:6:209:-10.7222,0,-58.8455 dDocent_Contig_7191 68 . T A 35.7583 . AB=0.166667;ABP=20.3821;AC=1;AF=0.166667;AN=6;AO=3;CIGAR=2X;DP=25;DPB=25;DPRA=5.14286;EPP=9.52472;EPPR=50.7827;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=1.73472e-18;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=116;QR=844;RO=22;RPL=3;RPP=9.52472;RPPR=50.7827;RPR=0;RUN=1;SAF=3;SAP=9.52472;SAR=0;SRF=22;SRP=50.7827;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|0:6:6,0:6:217:0:0:0,-1.80618,-19.8747 0|1:18:15,3:15:588:3:116:-5.39886,0,-47.8418 0|0:1:1,0:1:39:0:0:0,-0.30103,-3.89656 dDocent_Contig_7192 13 . A G 84.4909 . AB=0.363636;ABP=4.78696;AC=1;AF=0.166667;AN=6;AO=5;CIGAR=1X;DP=43;DPB=43;DPRA=2.57143;EPP=13.8677;EPPR=85.5263;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=0.973684;PAO=0;PQA=0;PQR=0;PRO=0;QA=188;QR=1508;RO=38;RPL=0;RPP=13.8677;RPPR=85.5263;RPR=5;RUN=1;SAF=5;SAP=13.8677;SAR=0;SRF=38;SRP=85.5263;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:25:24,1:24:956:1:41:0,-3.43118,-82.2463 0/1:11:7,4:7:280:4:147:-10.273,0,-22.2599 0/0:7:7,0:7:272:0:0:0,-2.10721,-24.8448 dDocent_Contig_7193 22 . C T 305.906 . AB=0.317073;ABP=14.9269;AC=2;AF=0.333333;AN=6;AO=13;CIGAR=1X;DP=59;DPB=59;DPRA=1.13889;EPP=31.2394;EPPR=86.2815;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=56.8696;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=0.913043;PAO=0;PQA=0;PQR=0;PRO=0;QA=508;QR=1868;RO=46;RPL=0;RPP=31.2394;RPPR=102.898;RPR=13;RUN=1;SAF=13;SAP=31.2394;SAR=0;SRF=44;SRP=86.2815;SRR=2;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:26:18,8:18:732:8:305:-19.9759,0,-54.7524 0/0:18:18,0:18:730:0:0:0,-5.41854,-64.9185 0/1:15:10,5:10:406:5:203:-14.1376,0,-31.274 dDocent_Contig_7194 12 . A G 35.2687 . AB=0.157895;ABP=22.325;AC=1;AF=0.166667;AN=6;AO=3;CIGAR=1X;DP=49;DPB=49;DPRA=1.26667;EPP=9.52472;EPPR=102.898;GTI=0;LEN=1;MEANALT=1;MQM=55;MQMR=59.8913;NS=3;NUMALT=1;ODDS=0;PAIRED=0;PAIREDR=0.543478;PAO=0;PQA=0;PQR=0;PRO=0;QA=119;QR=1856;RO=46;RPL=0;RPP=9.52472;RPPR=102.898;RPR=3;RUN=1;SAF=3;SAP=9.52472;SAR=0;SRF=46;SRP=102.898;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:15:15,0:15:610:0:0:0,-4.51545,-55.2295 0/1:19:16,3:16:648:3:119:-5.35065,0,-52.9334 0/0:15:15,0:15:598:0:0:0,-4.51545,-54.1567 dDocent_Contig_7195 12 . A T 383.075 . AB=0.162162;ABP=39.6906;AC=1;AF=0.166667;AN=6;AO=6;CIGAR=1X2M1X1M;DP=107;DPB=107;DPRA=3.08333;EPP=16.0391;EPPR=183.243;GTI=0;LEN=1;MEANALT=3;MQM=60;MQMR=60;NS=3;NUMALT=3;ODDS=6.93889e-18;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=244;QR=3274;RO=83;RPL=0;RPP=16.0391;RPPR=183.243;RPR=6;RUN=1;SAF=6;SAP=16.0391;SAR=0;SRF=83;SRP=183.243;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|0:58:44,0,0,14:44:1734:0,0,14:0,0,525:-30.1283,-43.3737,-186.039,-43.3737,-186.039,-186.039,0,-143.045,-143.045,-138.83 0|0:12:11,0,0,1:11:441:0,0,1:0,0,10:0,-3.31133,-39.9212,-3.31133,-39.9212,-39.9212,-2.61236,-39.3473,-39.3473,-39.0463 0|1:37:28,6,2,0:28:1099:6,2,0:244,79,0:-11.7021,0,-88.5664,-13.633,-83.8719,-103.399,-20.1309,-90.3726,-104.001,-110.501 dDocent_Contig_7196 22 . T C 580.031 . AB=0.384615;ABP=9.02361;AC=3;AF=0.5;AN=6;AO=20;CIGAR=1X2M1X;DP=52;DPB=52;DPRA=0;EPP=46.4397;EPPR=48.6112;GTI=0;LEN=1;MEANALT=1.66667;MQM=60;MQMR=60;NS=3;NUMALT=2;ODDS=0;PAIRED=0;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=801;QR=841;RO=21;RPL=0;RPP=46.4397;RPPR=48.6112;RPR=20;RUN=1;SAF=20;SAP=46.4397;SAR=0;SRF=21;SRP=48.6112;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 1|0:32:9,13,10:9:360:13,10:524,402:-43.9583,-3.47506,-29.2141,-13.5415,0,-40.1834 0|1:5:2,2,1:2:80:2,1:77,41:-5.70382,0,-5.9813,-2.91354,-3.19598,-9.20991 0|1:15:10,5,0:10:401:5,0:200,0:-13.8636,0,-31.9342,-16.8739,-33.4394,-49.9134 dDocent_Contig_7197 132 . C T 104.578 . AB=0.166667;ABP=14.5915;AC=3;AF=0.5;AN=6;AO=5;CIGAR=1X;DP=31;DPB=31;DPRA=0.46875;EPP=13.8677;EPPR=59.4686;GTI=0;LEN=1;MEANALT=1;MQM=55.2;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=166;QR=829;RO=26;RPL=0;RPP=13.8677;RPPR=59.4686;RPR=5;RUN=1;SAF=0;SAP=13.8677;SAR=5;SRF=0;SRP=59.4686;SRR=26;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:16:16,0:16:532:0:0:0,-4.81648,-48.1971 1/1:3:0,3:0:0:3:100:-9.29371,-0.90309,0 0/1:12:10,2:10:297:2:66:-2.65595,0,-23.406 dDocent_Contig_7198 14 . G C 513.359 . AB=0.228571;ABP=70.2019;AC=2;AF=0.333333;AN=6;AO=24;CIGAR=1X;DP=114;DPB=114;DPRA=5.83333;EPP=55.1256;EPPR=198.443;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=953;QR=3596;RO=90;RPL=0;RPP=55.1256;RPPR=198.443;RPR=24;RUN=1;SAF=24;SAP=55.1256;SAR=0;SRF=90;SRP=198.443;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:64:51,13:51:2052:13:525:-28.3317,0,-165.597 0/0:9:9,0:9:366:0:0:0,-2.70927,-33.3046 0/1:41:30,11:30:1178:11:428:-26.5271,0,-93.9543 dDocent_Contig_7200 107 . N G 279.308 . AB=0;ABP=0;AC=4;AF=1;AN=4;AO=6;CIGAR=1X4M;DP=16;DPB=16;DPRA=0.777778;EPP=16.0391;EPPR=0;GTI=0;LEN=1;MEANALT=2;MQM=33;MQMR=0;NS=2;NUMALT=2;ODDS=0;PAIRED=1;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=185;QR=0;RO=0;RPL=0;RPP=16.0391;RPPR=0;RPR=6;RUN=1;SAF=0;SAP=16.0391;SAR=6;SRF=0;SRP=0;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 1|1:9:0,9,0:0:0:9,0:299,0:-12.2379,-2.70927,0,-12.2379,-2.70927,-12.2379 .:.:.:.:.:.:.:. 1|1:7:0,1,6:0:0:1,6:34,185:-15.3913,-14.3661,-14.0651,-1.80618,-0.612473,0 dDocent_Contig_7201 117 . A C 78.0158 . AB=0.163265;ABP=51.2702;AC=2;AF=0.333333;AN=6;AO=8;CIGAR=1X;DP=51;DPB=51;DPRA=12.25;EPP=20.3821;EPPR=96.3836;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=281;QR=1512;RO=43;RPL=0;RPP=20.3821;RPPR=96.3836;RPR=8;RUN=1;SAF=0;SAP=20.3821;SAR=8;SRF=0;SRP=96.3836;SRR=43;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:26:23,3:23:815:3:107:-2.15539,0,-65.8448 0/0:2:2,0:2:72:0:0:0,-0.60206,-6.83672 0/1:23:18,5:18:625:5:174:-9.07779,0,-49.6491 dDocent_Contig_7202 9 . C T 50.6872 . AB=0.16;ABP=28.1125;AC=1;AF=0.166667;AN=6;AO=5;CIGAR=1X;DP=41;DPB=41;DPRA=20;EPP=13.8677;EPPR=81.1833;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=195;QR=1388;RO=36;RPL=0;RPP=13.8677;RPPR=81.1833;RPR=5;RUN=1;SAF=5;SAP=13.8677;SAR=0;SRF=36;SRP=81.1833;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:15:14,1:14:535:1:39:0,-0.618885,-44.5968 0/0:1:1,0:1:39:0:0:0,-0.30103,-3.89656 0/1:25:21,4:21:814:4:156:-6.89154,0,-66.0595 dDocent_Contig_7203 9 . C T 125.048 . AB=0.333333;ABP=7.35324;AC=2;AF=0.333333;AN=6;AO=6;CIGAR=1X;DP=20;DPB=20;DPRA=4.5;EPP=16.0391;EPPR=33.4109;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=0.928571;PAO=0;PQA=0;PQR=0;PRO=0;QA=230;QR=538;RO=14;RPL=0;RPP=16.0391;RPPR=33.4109;RPR=6;RUN=1;SAF=6;SAP=16.0391;SAR=0;SRF=14;SRP=33.4109;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:7:6,1:6:232:1:39:-1.78935,0,-19.1417 0/1:11:6,5:6:229:5:191:-14.2473,0,-17.6644 0/0:2:2,0:2:77:0:0:0,-0.60206,-7.30914 dDocent_Contig_7204 98 . N T 75.8478 . AB=0;ABP=0;AC=2;AF=1;AN=2;AO=2;CIGAR=10X;DP=2;DPB=2;DPRA=0;EPP=7.35324;EPPR=0;GTI=0;LEN=1;MEANALT=1;MQM=57;MQMR=0;NS=1;NUMALT=1;ODDS=5.99146;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=80;QR=0;RO=0;RPL=2;RPP=7.35324;RPPR=0;RPR=0;RUN=1;SAF=0;SAP=7.35324;SAR=2;SRF=0;SRP=0;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL .:.:.:.:.:.:.:. .:.:.:.:.:.:.:. 1|1:2:0,2:0:0:2:80:-7.5837,-0.60206,0 dDocent_Contig_7205 122 . T C 31.7182 . AB=0.222222;ABP=9.04217;AC=1;AF=0.166667;AN=6;AO=2;CIGAR=1X;DP=18;DPB=18;DPRA=2;EPP=7.35324;EPPR=37.7539;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=78;QR=578;RO=16;RPL=0;RPP=7.35324;RPPR=37.7539;RPR=2;RUN=1;SAF=0;SAP=7.35324;SAR=2;SRF=0;SRP=37.7539;SRR=16;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:9:7,2:7:262:2:78:-4.6942,0,-21.2282 0/0:6:6,0:6:205:0:0:0,-1.80618,-18.783 0/0:3:3,0:3:111:0:0:0,-0.90309,-10.3535 dDocent_Contig_7206 25 . G A 106.729 . AB=0.294118;ABP=9.26925;AC=2;AF=0.333333;AN=6;AO=5;CIGAR=1X;DP=26;DPB=26;DPRA=0.944444;EPP=13.8677;EPPR=48.6112;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=205;QR=832;RO=21;RPL=0;RPP=13.8677;RPPR=48.6112;RPR=5;RUN=1;SAF=5;SAP=13.8677;SAR=0;SRF=21;SRP=48.6112;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:6:5,1:5:191:1:41:-2.28839,0,-15.7486 0/1:11:7,4:7:277:4:164:-11.8386,0,-21.985 0/0:9:9,0:9:364:0:0:0,-2.70927,-33.1248 dDocent_Contig_7207 10 . T C 469.556 . AB=0.247191;ABP=52.4174;AC=3;AF=0.5;AN=6;AO=22;CIGAR=1X3M;DP=89;DPB=89;DPRA=0;EPP=50.7827;EPPR=118.098;GTI=0;LEN=1;MEANALT=3;MQM=53.0455;MQMR=59.0755;NS=3;NUMALT=3;ODDS=1.38778e-17;PAIRED=0;PAIREDR=0.622642;PAO=0;PQA=0;PQR=0;PRO=0;QA=817;QR=2114;RO=53;RPL=0;RPP=50.7827;RPPR=118.098;RPR=22;RUN=1;SAF=22;SAP=50.7827;SAR=0;SRF=53;SRP=118.098;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|1:55:39,3,0,11:39:1560:3,0,11:121,0,373:-17.3605,-19.1142,-146.729,-29.1006,-147.632,-157.607,0,-118.499,-128.474,-125.162 0|1:22:10,1,3,8:10:396:1,3,8:41,121,322:-23.5331,-23.1584,-54.3379,-16.981,-45.0733,-47.5552,0,-28.0946,-21.9139,-29.0723 0|1:12:4,1,4,3:4:158:1,4,3:40,162,122:-11.5844,-9.49307,-22.1927,0,-9.70122,-11.7922,-2.71965,-12.4265,-2.92909,-14.8194 dDocent_Contig_7211 9 . C A 1062.99 . AB=0.449438;ABP=4.98658;AC=3;AF=0.5;AN=6;AO=40;CIGAR=1X;DP=89;DPB=89;DPRA=0;EPP=89.8692;EPPR=109.412;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=1528;QR=1887;RO=49;RPL=0;RPP=89.8692;RPPR=109.412;RPR=40;RUN=1;SAF=40;SAP=89.8692;SAR=0;SRF=49;SRP=109.412;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:58:31,27:31:1201:27:1036:-76.0882,0,-90.9262 0/1:5:4,1:4:143:1:39:-2.39141,0,-11.7158 0/1:26:14,12:14:543:12:453:-33.2869,0,-41.3892 dDocent_Contig_7212 107 . N C 297.322 . AB=0;ABP=0;AC=4;AF=1;AN=4;AO=10;CIGAR=1X;DP=10;DPB=10;DPRA=0;EPP=24.725;EPPR=0;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=0;NS=2;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=320;QR=0;RO=0;RPL=0;RPP=24.725;RPPR=0;RPR=10;RUN=1;SAF=0;SAP=24.725;SAR=10;SRF=0;SRP=0;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 1/1:6:0,6:0:0:6:194:-17.7791,-1.80618,0 ./.:.:.:.:.:.:.:. 1/1:4:0,4:0:0:4:126:-11.6519,-1.20412,0 dDocent_Contig_7213 19 . A G 44.4131 . AB=0.147059;ABP=39.7976;AC=2;AF=0.333333;AN=6;AO=5;CIGAR=1X2M1X1M1X;DP=39;DPB=39;DPRA=3.4;EPP=13.8677;EPPR=76.8404;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=3.46945e-18;PAIRED=0;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=193;QR=1330;RO=34;RPL=0;RPP=13.8677;RPPR=76.8404;RPR=5;RUN=1;SAF=5;SAP=13.8677;SAR=0;SRF=34;SRP=76.8404;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|1:29:25,4:25:983:4:156:-5.68725,0,-80.0474 0|0:5:5,0:5:187:0:0:0,-1.50515,-17.1914 0|1:5:4,1:4:160:1:37:-2.19268,0,-13.2789 dDocent_Contig_7214 50 . G A 890.173 . AB=0.477612;ABP=3.30199;AC=2;AF=0.333333;AN=6;AO=32;CIGAR=1X;DP=74;DPB=74;DPRA=4.78571;EPP=72.4974;EPPR=94.2121;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=1245;QR=1626;RO=42;RPL=32;RPP=72.4974;RPPR=94.2121;RPR=0;RUN=1;SAF=32;SAP=72.4974;SAR=0;SRF=42;SRP=94.2121;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:43:25,18:25:953:18:709:-51.1928,0,-73.1203 0/0:7:7,0:7:276:0:0:0,-2.10721,-25.209 0/1:24:10,14:10:397:14:536:-41.3474,0,-28.8635 dDocent_Contig_7215 16 . G T 135.525 . AB=0.166667;ABP=14.5915;AC=3;AF=0.5;AN=6;AO=5;CIGAR=1X;DP=29;DPB=29;DPRA=0.535714;EPP=13.8677;EPPR=55.1256;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=199;QR=968;RO=24;RPL=0;RPP=13.8677;RPPR=55.1256;RPR=5;RUN=1;SAF=5;SAP=13.8677;SAR=0;SRF=24;SRP=55.1256;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:12:10,2:10:405:2:80:-3.97922,0,-33.1977 1/1:3:0,3:0:0:3:119:-11.0945,-0.90309,0 0/0:14:14,0:14:563:0:0:0,-4.21442,-51.0115 dDocent_Contig_7216 39 . C A 1550.66 . AB=0.426357;ABP=9.08706;AC=3;AF=0.5;AN=6;AO=55;CIGAR=1X;DP=129;DPB=129;DPRA=0;EPP=122.441;EPPR=163.699;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=6.93889e-18;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=2205;QR=2997;RO=74;RPL=0;RPP=122.441;RPPR=163.699;RPR=55;RUN=1;SAF=55;SAP=122.441;SAR=0;SRF=74;SRP=163.699;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:70:46,24:46:1857:24:964:-65.9864,0,-146.257 0/1:17:6,11:6:243:11:440:-34.8378,0,-17.1305 0/1:42:22,20:22:897:20:801:-59.7649,0,-68.3912 dDocent_Contig_7217 59 . G A 64.5449 . AB=0.3;ABP=6.48466;AC=1;AF=0.25;AN=4;AO=3;CIGAR=1X;DP=20;DPB=20;DPRA=1;EPP=9.52472;EPPR=39.9253;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=2;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=123;QR=690;RO=17;RPL=3;RPP=9.52472;RPPR=39.9253;RPR=0;RUN=1;SAF=3;SAP=9.52472;SAR=0;SRF=17;SRP=39.9253;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:10:10,0:10:405:0:0:0,-3.0103,-36.8104 ./.:.:.:.:.:.:.:. 0/1:10:7,3:7:285:3:123:-8.45449,0,-23.0141 dDocent_Contig_7218 88 . A G 173.945 . AB=0.346154;ABP=8.35546;AC=2;AF=0.333333;AN=6;AO=10;CIGAR=1X;DP=42;DPB=42;DPRA=0;EPP=24.725;EPPR=70.3259;GTI=0;LEN=1;MEANALT=1.33333;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=348;QR=1107;RO=31;RPL=10;RPP=24.725;RPPR=70.3259;RPR=0;RUN=1;SAF=10;SAP=24.725;SAR=0;SRF=31;SRP=70.3259;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:21:15,6:15:555:6:218:-13.6512,0,-43.9688 0/1:5:2,3:2:74:3:94:-7.26599,0,-5.52073 0/0:16:14,1:14:478:1:36:0,-1.23208,-39.7863 dDocent_Contig_7219 20 . C A 97.1366 . AB=0.333333;ABP=5.9056;AC=1;AF=0.166667;AN=6;AO=4;CIGAR=1X;DP=26;DPB=26;DPRA=1.71429;EPP=11.6962;EPPR=22.3561;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=0;PAIREDR=0.772727;PAO=0;PQA=0;PQR=0;PRO=0;QA=164;QR=849;RO=22;RPL=0;RPP=11.6962;RPPR=50.7827;RPR=4;RUN=1;SAF=4;SAP=11.6962;SAR=0;SRF=18;SRP=22.3561;SRR=4;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:8:8,0:8:317:0:0:0,-2.40824,-28.8943 0/0:6:6,0:6:223:0:0:0,-1.80618,-20.4263 0/1:12:8,4:8:309:4:164:-11.5375,0,-24.5564 dDocent_Contig_7222 12 . T G 2985.66 . AB=0.76;ABP=76.4061;AC=3;AF=0.5;AN=6;AO=95;CIGAR=1X;DP=125;DPB=125;DPRA=0;EPP=209.3;EPPR=68.1545;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=6.93889e-18;PAIRED=0.873684;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=3788;QR=1201;RO=30;RPL=0;RPP=209.3;RPPR=68.1545;RPR=95;RUN=1;SAF=95;SAP=209.3;SAR=0;SRF=30;SRP=68.1545;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:54:13,41:13:515:41:1642:-131.742,0,-30.4391 0/1:34:12,22:12:481:22:879:-69.1815,0,-33.406 0/1:37:5,32:5:205:32:1267:-103.165,0,-7.6969 dDocent_Contig_7223 10 . T A 565.529 . AB=0.28;ABP=24.0302;AC=5;AF=0.833333;AN=6;AO=14;CIGAR=1X2M;DP=50;DPB=50;DPRA=0;EPP=33.4109;EPPR=48.6112;GTI=0;LEN=1;MEANALT=1.66667;MQM=60;MQMR=60;NS=3;NUMALT=2;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=565;QR=845;RO=21;RPL=0;RPP=33.4109;RPPR=48.6112;RPR=14;RUN=1;SAF=14;SAP=33.4109;SAR=0;SRF=21;SRP=48.6112;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 1|1:31:8,13,10:8:319:13,10:518,402:-47.1047,-6.86075,-29.2168,-16.383,0,-39.6437 0|1:13:12,0,1:12:486:0,1:0,40:-0.0822893,-3.69465,-43.773,0,-40.4783,-40.1773 1|1:6:1,2,3:1:40:2,3:78,123:-12.9692,-6.86705,-9.5576,-3.10607,0,-5.50137 dDocent_Contig_7224 79 . A G 41.0551 . AB=0.173913;ABP=24.253;AC=1;AF=0.166667;AN=6;AO=6;CIGAR=1X;DP=66;DPB=66;DPRA=1.23684;EPP=16.0391;EPPR=133.299;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=3.46945e-18;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=209;QR=2052;RO=60;RPL=6;RPP=16.0391;RPPR=133.299;RPR=0;RUN=1;SAF=6;SAP=16.0391;SAR=0;SRF=60;SRP=133.299;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:19:19,0:19:640:0:0:0,-5.71957,-57.9166 0/1:23:19,4:19:657:4:139:-5.929,0,-52.5283 0/0:24:22,2:22:755:2:70:0,-0.577324,-61.6213 dDocent_Contig_7226 22 . T G 250.805 . AB=0.0847458;ABP=444.85;AC=1;AF=0.166667;AN=6;AO=30;CIGAR=6M2X2M;DP=460;DPB=460.9;DPRA=0;EPP=68.1545;EPPR=743.482;GTI=0;LEN=1;MEANALT=8.33333;MQM=57;MQMR=59.9501;NS=3;NUMALT=4;ODDS=0;PAIRED=0.3;PAIREDR=0.627566;PAO=0;PQA=0;PQR=0;PRO=0;QA=1173;QR=13417;RO=341;RPL=0;RPP=68.1545;RPPR=743.482;RPR=30;RUN=1;SAF=30;SAP=68.1545;SAR=0;SRF=341;SRP=743.482;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|1:162:115,0,19,15,3:115:4529:0,19,15,3:0,743,602,122:-26.3639,-60.9823,-433.567,0,-372.58,-366.861,-11.3799,-383.965,-322.979,-379.45,-50.9185,-423.503,-362.517,-373.902,-422.6 0|0:165:133,7,5,5,6:133:5218:7,5,5,6:280,199,203,246:0,-16.9715,-443.937,-23.689,-429.696,-451.256,-23.293,-429.302,-436.019,-450.862,-19.7296,-425.739,-432.456,-432.062,-446.998 0|0:133:93,10,6,9,8:93:3670:10,6,9,8:362,231,365,326:-2.10981,-0.573639,-299.538,-11.3064,-283.749,-311.48,0,-272.447,-283.185,-299.275,-3.20578,-275.652,-286.391,-275.089,-302.782 dDocent_Contig_7227 165 . C T 125.307 . AB=0.285714;ABP=11.386;AC=2;AF=0.333333;AN=6;AO=6;CIGAR=1X;DP=24;DPB=24;DPRA=3.5;EPP=16.0391;EPPR=42.0968;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=240;QR=706;RO=18;RPL=6;RPP=16.0391;RPPR=42.0968;RPR=0;RUN=1;SAF=0;SAP=16.0391;SAR=6;SRF=0;SRP=42.0968;SRR=18;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:12:9,3:9:349:3:122:-7.76013,0,-28.1478 0/1:9:6,3:6:238:3:118:-8.29324,0,-19.0845 0/0:3:3,0:3:119:0:0:0,-0.90309,-11.0945 dDocent_Contig_7228 22 . C G 38.7634 . AB=0.176471;ABP=18.4661;AC=1;AF=0.166667;AN=6;AO=3;CIGAR=1M6I1M1X1M1X;DP=150;DPB=153.6;DPRA=0.255639;EPP=9.52472;EPPR=320.045;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=0.993151;PAO=0;PQA=0;PQR=0;PRO=0;QA=116;QR=5767;RO=146;RPL=0;RPP=9.52472;RPPR=320.045;RPR=3;RUN=1;SAF=3;SAP=9.52472;SAR=0;SRF=146;SRP=320.045;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|0:99:99,0:99:3910:0:0:0,-29.802,-351.922 0|1:17:14,3:14:555:3:116:-5.70019,0,-45.1759 0|0:34:33,0:33:1302:0:0:0,-9.93399,-117.091 dDocent_Contig_7229 25 . C A 182.445 . AB=0.196078;ABP=43.9277;AC=2;AF=0.333333;AN=6;AO=10;CIGAR=1X;DP=57;DPB=57;DPRA=4.25;EPP=24.725;EPPR=105.07;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=404;QR=1874;RO=47;RPL=0;RPP=24.725;RPPR=105.07;RPR=10;RUN=1;SAF=10;SAP=24.725;SAR=0;SRF=47;SRP=105.07;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:30:26,4:26:1034:4:158:-5.56886,0,-84.3248 0/0:6:6,0:6:243:0:0:0,-1.80618,-22.2476 0/1:21:15,6:15:597:6:246:-16.1985,0,-47.7473 dDocent_Contig_7230 38 . G A 52.7121 . AB=0.333333;ABP=5.18177;AC=1;AF=0.166667;AN=6;AO=3;CIGAR=1X;DP=65;DPB=65;DPRA=0.321429;EPP=3.73412;EPPR=120.83;GTI=0;LEN=1;MEANALT=1;MQM=42.6667;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=0;PAIREDR=0.935484;PAO=0;PQA=0;PQR=0;PRO=0;QA=116;QR=2475;RO=62;RPL=0;RPP=9.52472;RPPR=137.642;RPR=3;RUN=1;SAF=2;SAP=3.73412;SAR=1;SRF=60;SRP=120.83;SRR=2;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:32:32,0:32:1274:0:0:0,-9.63296,-114.919 0/1:9:6,3:6:237:3:116:-7.09511,0,-18.9931 0/0:24:24,0:24:964:0:0:0,-7.22472,-87.062 dDocent_Contig_7231 67 . G A 352.38 . AB=0.394737;ABP=6.66752;AC=2;AF=0.333333;AN=6;AO=18;CIGAR=1X;DP=85;DPB=85;DPRA=0;EPP=42.0968;EPPR=148.499;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=666;QR=2441;RO=67;RPL=18;RPP=42.0968;RPPR=148.499;RPR=0;RUN=1;SAF=18;SAP=42.0968;SAR=0;SRF=67;SRP=148.499;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:47:44,3:44:1629:3:116:0,-3.3307,-136.047 0/1:13:3,10:3:116:10:368:-29.5516,0,-6.90431 0/1:25:20,5:20:696:5:182:-9.20926,0,-55.4313 dDocent_Contig_7232 14 . G C 187.222 . AB=0.115385;ABP=170.047;AC=2;AF=0.333333;AN=6;AO=15;CIGAR=2M1X4M;DP=130;DPB=135;DPRA=0;EPP=35.5824;EPPR=211.472;GTI=0;LEN=1;MEANALT=3.33333;MQM=60;MQMR=60;NS=3;NUMALT=4;ODDS=0;PAIRED=0.933333;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=614;QR=3808;RO=96;RPL=0;RPP=35.5824;RPPR=211.472;RPR=15;RUN=1;SAF=15;SAP=35.5824;SAR=0;SRF=96;SRP=211.472;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|1:84:67,1,0,8,5:67:2660:1,0,8,5:41,0,327,205:-6.81509,-23.5999,-242.27,-26.9841,-242.571,-245.955,0,-215.586,-218.971,-216.562,-10.063,-225.65,-229.034,-202.05,-227.529 0|1:23:15,0,0,4,4:15:593:0,0,4,4:0,0,164,161:-9.02459,-13.54,-62.3311,-13.54,-62.3311,-62.3311,0,-48.7925,-48.7925,-47.5883,-0.275001,-49.0616,-49.0616,-35.5222,-47.8575 0|0:23:14,2,4,3,0:14:555:2,4,3,0:74,153,123,0:-8.33417,-6.50001,-51.5832,0,-39.6347,-44.4815,-2.38587,-42.0307,-35.5308,-47.1792,-12.5486,-52.1853,-45.6857,-48.0823,-58.237 dDocent_Contig_7233 113 . T A 249.236 . AB=0.111111;ABP=62.1226;AC=1;AF=0.166667;AN=6;AO=5;CIGAR=1X3M1X2M1X1M1X;DP=50;DPB=50;DPRA=4.5;EPP=13.8677;EPPR=76.8404;GTI=0;LEN=1;MEANALT=2;MQM=60;MQMR=60;NS=3;NUMALT=2;ODDS=3.46945e-18;PAIRED=0.2;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=173;QR=1140;RO=34;RPL=0;RPP=13.8677;RPPR=76.8404;RPR=5;RUN=1;SAF=0;SAP=13.8677;SAR=5;SRF=0;SRP=76.8404;SRR=34;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|1:26:22,1,3:22:739:1,3:35,105:-1.92055,-5.69547,-65.2481,0,-57.0042,-58.9495 0|0:5:0,5,0:0:0:5,0:175,0:-16.0713,-1.50515,0,-16.0713,-1.50515,-16.0713 0|0:19:12,5,2:12:401:5,2:171,68:-10.2687,0,-30.9567,-8.3656,-26.9451,-40.2249 dDocent_Contig_7234 98 . N C 196.502 . AB=0;ABP=0;AC=2;AF=1;AN=2;AO=7;CIGAR=1X;DP=7;DPB=7;DPRA=0;EPP=18.2106;EPPR=0;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=0;NS=1;NUMALT=1;ODDS=9.4572;PAIRED=1;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=215;QR=0;RO=0;RPL=7;RPP=18.2106;RPPR=0;RPR=0;RUN=1;SAF=7;SAP=18.2106;SAR=0;SRF=0;SRP=0;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL ./.:.:.:.:.:.:.:. ./.:.:.:.:.:.:.:. 1/1:7:0,7:0:0:7:215:-19.6501,-2.10721,0 dDocent_Contig_7235 52 . G A 186.483 . AB=0.3;ABP=13.4334;AC=1;AF=0.166667;AN=6;AO=10;CIGAR=1X;DP=122;DPB=122;DPRA=0.410448;EPP=24.725;EPPR=246.215;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=3.46945e-18;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=361;QR=3987;RO=112;RPL=10;RPP=24.725;RPPR=246.215;RPR=0;RUN=1;SAF=10;SAP=24.725;SAR=0;SRF=112;SRP=246.215;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:67:67,0:67:2401:0:0:0,-20.169,-216.335 0/1:30:21,9:21:771:9:324:-20.4722,0,-60.6873 0/0:25:24,1:24:815:1:37:0,-3.82792,-69.9669 dDocent_Contig_7237 104 . N A 88.0662 . AB=0;ABP=0;AC=6;AF=1;AN=6;AO=4;CIGAR=4X4M;DP=18;DPB=18;DPRA=9;EPP=11.6962;EPPR=0;GTI=0;LEN=1;MEANALT=3;MQM=9;MQMR=0;NS=3;NUMALT=5;ODDS=0;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=36;QR=0;RO=0;RPL=0;RPP=11.6962;RPPR=0;RPR=4;RUN=1;SAF=4;SAP=11.6962;SAR=0;SRF=0;SRP=0;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 1|1:1:0,0,1,0,0,0:0:0:0,1,0,0,0:0,6,0,0,0:-0.357257,-0.357257,-0.357257,-0.30103,-0.30103,0,-0.357257,-0.357257,-0.30103,-0.357257,-0.357257,-0.357257,-0.30103,-0.357257,-0.357257,-0.357257,-0.357257,-0.30103,-0.357257,-0.357257,-0.357257 1|1:8:0,0,3,1,4,0:0:0:0,3,1,4,0:0,40,9,150,0:-6.1613,-6.1613,-6.1613,-4.25697,-4.25697,-3.35388,-5.90629,-5.90629,-4.01092,-5.60526,-1.94606,-1.94606,0,-1.69302,-0.741944,-6.1613,-6.1613,-4.25697,-5.90629,-1.94606,-6.1613 1|1:9:0,3,2,0,0,4:0:0:3,2,0,0,4:30,20,0,0,36:-2.25356,-1.20732,-0.30423,-1.53571,-0.487408,-0.933654,-2.25356,-1.20732,-1.53571,-2.25356,-2.25356,-1.20732,-1.53571,-2.25356,-2.25356,-1.20412,-0.160519,-0.487268,-1.20412,-1.20412,0 dDocent_Contig_7239 20 . G A 702.177 . AB=0.350649;ABP=17.9286;AC=3;AF=0.5;AN=6;AO=27;CIGAR=1M3D1M1X;DP=77;DPB=61.5;DPRA=0;EPP=61.6401;EPPR=102.898;GTI=0;LEN=1;MEANALT=1.33333;MQM=60;MQMR=60;NS=3;NUMALT=2;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=1078;QR=1801;RO=46;RPL=0;RPP=61.6401;RPPR=102.898;RPR=27;RUN=1;SAF=27;SAP=61.6401;SAR=0;SRF=46;SRP=102.898;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|1:38:18,16,4:18:706:16,4:636,158:-46.9443,0,-53.2403,-39.3618,-45.0548,-96.214 0|1:8:3,5,0:3:118:5,0:200,0:-15.9713,0,-8.59396,-16.8744,-10.0991,-26.5781 0|1:31:25,6,0:25:977:6,0:242,0:-12.825,0,-78.9055,-20.3508,-80.7117,-100.662 dDocent_Contig_7240 76 . C T 79.0184 . AB=0.25;ABP=11.6962;AC=1;AF=0.25;AN=4;AO=4;CIGAR=1X;DP=25;DPB=25;DPRA=1.77778;EPP=11.6962;EPPR=48.6112;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=2;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=156;QR=765;RO=21;RPL=4;RPP=11.6962;RPPR=48.6112;RPR=0;RUN=1;SAF=4;SAP=11.6962;SAR=0;SRF=21;SRP=48.6112;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:16:12,4:12:436:4:156:-9.60081,0,-34.7559 ./.:.:.:.:.:.:.:. 0/0:9:9,0:9:329:0:0:0,-2.70927,-29.9593 dDocent_Contig_7241 44 . T C 1167.92 . AB=0.512821;ABP=3.12166;AC=3;AF=0.5;AN=6;AO=40;CIGAR=1X;DP=78;DPB=78;DPRA=0;EPP=89.8692;EPPR=85.5263;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=1600;QR=1488;RO=38;RPL=0;RPP=89.8692;RPPR=85.5263;RPR=40;RUN=1;SAF=40;SAP=89.8692;SAR=0;SRF=38;SRP=85.5263;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:35:22,13:22:865:13:515:-36.1555,0,-67.6226 0/1:15:13,2:13:519:2:80:-3.07634,0,-42.5419 0/1:28:3,25:3:104:25:1005:-82.316,0,-1.27046 dDocent_Contig_7242 13 . G A 32.2721 . AB=0.142857;ABP=26.2761;AC=1;AF=0.166667;AN=6;AO=6;CIGAR=1X;DP=92;DPB=92;DPRA=2.05556;EPP=16.0391;EPPR=189.757;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=3.46945e-18;PAIRED=1;PAIREDR=0.953488;PAO=0;PQA=0;PQR=0;PRO=0;QA=244;QR=3382;RO=86;RPL=0;RPP=16.0391;RPPR=189.757;RPR=6;RUN=1;SAF=6;SAP=16.0391;SAR=0;SRF=86;SRP=189.757;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:53:50,3:50:1967:3:122:0,-4.5821,-165.856 0/0:18:18,0:18:711:0:0:0,-5.41854,-64.3177 0/1:21:18,3:18:704:3:122:-5.05086,0,-57.3598 dDocent_Contig_7243 18 . G A 33.9556 . 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AB=0.5;ABP=3.0103;AC=1;AF=0.166667;AN=6;AO=3;CIGAR=1X;DP=22;DPB=22;DPRA=0.75;EPP=9.52472;EPPR=42.0968;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=0;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=122;QR=727;RO=18;RPL=0;RPP=9.52472;RPPR=42.0968;RPR=3;RUN=1;SAF=3;SAP=9.52472;SAR=0;SRF=18;SRP=42.0968;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:11:10,0:10:401:0:0:0,-3.0103,-36.0576 0/0:5:5,0:5:204:0:0:0,-1.50515,-18.744 0/1:6:3,3:3:122:3:122:-9.56631,0,-9.56631 dDocent_Contig_7245 15 . T G 1083.68 . AB=0.0654206;ABP=178.534;AC=3;AF=0.5;AN=6;AO=7;CIGAR=1M2X14M;DP=132;DPB=129.706;DPRA=0;EPP=18.2106;EPPR=63.8115;GTI=0;LEN=1;MEANALT=8.5;MQM=60;MQMR=60;NS=3;NUMALT=7;ODDS=5.55112e-17;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=274;QR=1098;RO=28;RPL=0;RPP=18.2106;RPPR=63.8115;RPR=7;RUN=1;SAF=7;SAP=18.2106;SAR=0;SRF=28;SRP=63.8115;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|0:56:17,9,3,1,5,8,7,4:17:664:9,3,1,5,8,7,4:359,107,40,199,312,267,154:-24.4517,0,-51.8741,-20.8508,-45.8644,-74.5289,-26.2738,-51.288,-72.1367,-80.5548,-13.182,-38.1964,-59.0455,-64.4692,-66.2594,-3.92347,-28.9376,-49.7869,-55.2105,-42.119,-56.0976,-7.67414,-32.6879,-53.5369,-58.9605,-45.8692,-36.6106,-60.1486,-16.9268,-41.9408,-62.7897,-68.2134,-55.1221,-45.8634,-49.6135,-70.3046 1|1:25:0,6,0,1,1,6,10,0:0:0:6,0,1,1,6,10,0:226,0,40,40,232,385,0:-50.6795,-32.1616,-30.3554,-50.6795,-32.1616,-50.6795,-47.3835,-28.8652,-47.3835,-47.0824,-47.3835,-28.8652,-47.3835,-44.0873,-47.0824,-31.621,-13.1017,-31.621,-28.3245,-28.3245,-29.8148,-19.0656,-0.544085,-19.0656,-15.7685,-15.7685,0,-16.0553,-50.6795,-32.1616,-50.6795,-47.3835,-47.3835,-31.621,-19.0656,-50.6795 0|1:51:11,5,1,4,2,10,13,3:11:434:5,1,4,2,10,13,3:193,40,151,78,384,511,120:-38.7198,-26.1848,-60.3905,-38.7358,-58.6004,-74.1457,-29.6571,-49.5216,-62.0725,-64.1636,-35.6195,-55.4841,-68.0351,-58.9562,-70.7284,-10.5143,-30.379,-42.9298,-33.8512,-39.8135,-43.2148,0,-19.8655,-32.4165,-23.3379,-29.3002,-4.19523,-31.7985,-32.1456,-52.0103,-64.5614,-55.4825,-61.4451,-36.3397,-25.8263,-66.9536 dDocent_Contig_7247 10 . 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C T 228.179 . 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AB=0.395349;ABP=11.1912;AC=3;AF=0.5;AN=6;AO=34;CIGAR=1X;DP=86;DPB=86;DPRA=0;EPP=76.8404;EPPR=115.927;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=6.93889e-18;PAIRED=1;PAIREDR=0.903846;PAO=0;PQA=0;PQR=0;PRO=0;QA=1292;QR=1974;RO=52;RPL=0;RPP=76.8404;RPPR=115.927;RPR=34;RUN=1;SAF=34;SAP=76.8404;SAR=0;SRF=52;SRP=115.927;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:42:32,10:32:1204:10:373:-21.2771,0,-96.0136 0/1:32:15,17:15:583:17:649:-49.1135,0,-43.1801 0/1:12:5,7:5:187:7:270:-21.0532,0,-13.5801 dDocent_Contig_7274 37 . A T 303.35 . 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T C 150.34 . AB=0.210526;ABP=30.668;AC=2;AF=0.333333;AN=6;AO=8;CIGAR=1X;DP=56;DPB=56;DPRA=1.05556;EPP=20.3821;EPPR=107.241;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=3.46945e-18;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=324;QR=1709;RO=48;RPL=0;RPP=20.3821;RPPR=107.241;RPR=8;RUN=1;SAF=8;SAP=20.3821;SAR=0;SRF=48;SRP=107.241;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:18:18,0:18:631:0:0:0,-5.41854,-57.1105 0/1:20:14,6:14:488:6:242:-16.1369,0,-38.2262 0/1:18:16,2:16:590:2:82:-2.36114,0,-48.0156 dDocent_Contig_7290 19 . T A 439.541 . 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AB=0.291209;ABP=71.9247;AC=3;AF=0.5;AN=6;AO=53;CIGAR=1X;DP=182;DPB=182;DPRA=0;EPP=118.098;EPPR=283.13;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=2078;QR=5023;RO=129;RPL=53;RPP=118.098;RPPR=283.13;RPR=0;RUN=1;SAF=53;SAP=118.098;SAR=0;SRF=129;SRP=283.13;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:119:78,41:78:3086:41:1599:-108.322,0,-242.008 0/1:16:14,2:14:520:2:82:-2.9632,0,-42.3025 0/1:47:37,10:37:1417:10:397:-21.9386,0,-113.633 dDocent_Contig_7295 8 . T A 1040.27 . AB=0.0526316;ABP=69.0688;AC=0;AF=0;AN=6;AO=2;CIGAR=2X5M1X1M;DP=274;DPB=270.444;DPRA=0;EPP=7.35324;EPPR=213.643;GTI=0;LEN=1;MEANALT=7;MQM=34;MQMR=60;NS=3;NUMALT=7;ODDS=0;PAIRED=0;PAIREDR=0.350515;PAO=0;PQA=0;PQR=0;PRO=0;QA=68;QR=3818;RO=97;RPL=0;RPP=7.35324;RPPR=213.643;RPR=2;RUN=1;SAF=2;SAP=7.35324;SAR=0;SRF=97;SRP=213.643;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|0:167:69,1,39,0,22,0,0,8:69:2717:1,39,0,22,0,0,8:22,937,0,886,0,0,308:-52.2818,-71.6447,-294.898,-9.28908,-231.418,-221.085,-73.0529,-295.199,-232.826,-296.607,0,-222.166,-159.797,-223.575,-216.952,-73.0529,-295.199,-232.826,-296.607,-223.575,-296.607,-73.0529,-295.199,-232.826,-296.607,-223.575,-296.607,-296.607,-49.1951,-271.346,-208.974,-272.754,-199.721,-272.754,-272.754,-270.346 0|0:38:9,2,12,5,0,3,2,4:9:352:2,12,5,0,3,2,4:46,252,120,0,119,68,164:-13.1024,-12.8173,-41.1903,0,-25.9844,-25.359,-7.87652,-33.8612,-21.0569,-35.348,-15.8116,-41.7923,-28.9714,-36.8532,-44.7858,-6.24171,-32.2291,-19.4101,-27.2897,-35.2227,-34.3196,-10.8312,-36.8149,-23.9972,-31.8761,-39.8082,-30.2444,-39.2062,-3.14871,-29.1387,-16.3204,-24.1993,-32.1323,-22.5669,-27.1538,-30.9282 0|0:69:19,3,26,3,4,1,0,5:19:749:3,26,3,4,1,0,5:63,712,72,157,41,0,201:-44.1653,-45.9332,-106.682,0,-57.7031,-53.8214,-45.1236,-102.824,-56.8932,-105.873,-36.9651,-94.6698,-48.7343,-93.8607,-97.4179,-46.6011,-104.302,-58.3657,-103.493,-95.3392,-107.954,-49.8848,-107.585,-61.6481,-106.776,-98.6221,-108.255,-111.537,-34.0735,-91.7792,-45.8444,-90.9701,-82.8153,-92.4485,-95.7314,-94.2263 dDocent_Contig_7296 14 . C A 131.862 . AB=0.148148;ABP=90.1105;AC=3;AF=0.5;AN=6;AO=12;CIGAR=1X1M1X2M1X;DP=81;DPB=81;DPRA=0;EPP=29.068;EPPR=148.499;GTI=0;LEN=1;MEANALT=1.66667;MQM=57.8333;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=468;QR=2617;RO=67;RPL=0;RPP=29.068;RPPR=148.499;RPR=12;RUN=1;SAF=12;SAP=29.068;SAR=0;SRF=67;SRP=148.499;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|1:60:53,6:53:2096:6:231:-3.02906,0,-170.757 0|1:7:4,2:4:153:2:76:-5.01016,0,-11.936 0|1:14:10,4:10:368:4:161:-10.6564,0,-29.2446 dDocent_Contig_7297 38 . C T 102.978 . AB=0.227273;ABP=17.2236;AC=1;AF=0.166667;AN=6;AO=5;CIGAR=1X;DP=86;DPB=86;DPRA=0.6875;EPP=13.8677;EPPR=178.9;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=204;QR=3274;RO=81;RPL=0;RPP=13.8677;RPPR=178.9;RPR=5;RUN=1;SAF=5;SAP=13.8677;SAR=0;SRF=81;SRP=178.9;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:62:62,0:62:2522:0:0:0,-18.6639,-227.102 0/0:2:2,0:2:81:0:0:0,-0.60206,-7.68573 0/1:22:17,5:17:671:5:204:-12.1214,0,-54.0916 dDocent_Contig_7298 28 . T A 461.403 . AB=0.311475;ABP=21.8416;AC=1;AF=0.166667;AN=6;AO=20;CIGAR=1X;DP=103;DPB=103;DPRA=5.22222;EPP=46.4397;EPPR=183.243;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=770;QR=3255;RO=83;RPL=0;RPP=46.4397;RPPR=183.243;RPR=20;RUN=1;SAF=20;SAP=46.4397;SAR=0;SRF=83;SRP=183.243;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:61:42,19:42:1669:19:730:-47.6632,0,-132.086 0/0:9:9,0:9:347:0:0:0,-2.70927,-31.588 0/0:33:32,1:32:1239:1:40:0,-5.93831,-107.799 dDocent_Contig_7299 33 . C T 56.0157 . AB=0.181818;ABP=22.3561;AC=2;AF=0.5;AN=4;AO=4;CIGAR=1X;DP=22;DPB=22;DPRA=0;EPP=11.6962;EPPR=42.0968;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=2;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=161;QR=724;RO=18;RPL=0;RPP=11.6962;RPPR=42.0968;RPR=4;RUN=1;SAF=4;SAP=11.6962;SAR=0;SRF=18;SRP=42.0968;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:14:11,3:11:439:3:123:-7.25037,0,-35.6483 ./.:.:.:.:.:.:.:. 0/1:8:7,1:7:285:1:38:-1.38903,0,-23.6162 dDocent_Contig_7300 43 . T C 51.2581 . AB=0.1875;ABP=16.582;AC=1;AF=0.166667;AN=6;AO=3;CIGAR=1X;DP=25;DPB=25;DPRA=3.55556;EPP=9.52472;EPPR=50.7827;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=123;QR=876;RO=22;RPL=0;RPP=9.52472;RPPR=50.7827;RPR=3;RUN=1;SAF=3;SAP=9.52472;SAR=0;SRF=22;SRP=50.7827;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:16:13,3:13:509:3:123:-6.64831,0,-41.3383 0/0:7:7,0:7:286:0:0:0,-2.10721,-26.1148 0/0:2:2,0:2:81:0:0:0,-0.60206,-7.68573 dDocent_Contig_7301 16 . T G 65.4576 . AB=0.190476;ABP=20.4855;AC=1;AF=0.166667;AN=6;AO=10;CIGAR=1X;DP=95;DPB=95;DPRA=9;EPP=24.725;EPPR=187.585;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=380;QR=3402;RO=85;RPL=0;RPP=24.725;RPPR=187.585;RPR=10;RUN=1;SAF=10;SAP=24.725;SAR=0;SRF=85;SRP=187.585;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:69:63,6:63:2506:6:221:0,-0.532285,-205.431 0/0:5:5,0:5:203:0:0:0,-1.50515,-18.6531 0/1:21:17,4:17:693:4:159:-8.3692,0,-56.3758 dDocent_Contig_7302 121 . G A 504.237 . AB=0.274725;ABP=43.1229;AC=3;AF=0.5;AN=6;AO=25;CIGAR=1X6M;DP=91;DPB=91;DPRA=0;EPP=57.2971;EPPR=120.27;GTI=0;LEN=1;MEANALT=1.66667;MQM=60;MQMR=60;NS=3;NUMALT=2;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=878;QR=1938;RO=54;RPL=0;RPP=57.2971;RPPR=120.27;RPR=25;RUN=1;SAF=0;SAP=57.2971;SAR=25;SRF=0;SRP=120.27;SRR=54;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|1:64:35,11,17:35:1278:11,17:361,605:-38.7851,-20.1633,-121.277,0,-75.2853,-99.3276 0|1:2:1,0,1:1:37:0,1:0,37:-3.09577,-3.3968,-6.42382,0,-3.3968,-3.09577 0|1:25:18,0,7:18:623:0,7:0,236:-14.043,-19.4615,-70.0902,0,-50.9682,-48.861 dDocent_Contig_7304 61 . T A 1236.74 . AB=0.608696;ABP=10.0912;AC=3;AF=0.5;AN=6;AO=42;CIGAR=1X;DP=69;DPB=69;DPRA=0;EPP=94.2121;EPPR=61.6401;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=1654;QR=1050;RO=27;RPL=42;RPP=94.2121;RPPR=61.6401;RPR=0;RUN=1;SAF=42;SAP=94.2121;SAR=0;SRF=27;SRP=61.6401;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:39:14,25:14:536:25:980:-76.7588,0,-36.835 0/1:6:5,1:5:200:1:41:-2.28839,0,-16.5739 0/1:24:8,16:8:314:16:633:-50.081,0,-21.3998 dDocent_Contig_7305 8 . T G 1713.52 . AB=0.630435;ABP=16.6056;AC=2;AF=0.5;AN=4;AO=58;CIGAR=1X;DP=92;DPB=92;DPRA=0;EPP=128.956;EPPR=76.8404;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=2;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=2246;QR=1318;RO=34;RPL=0;RPP=128.956;RPPR=76.8404;RPR=58;RUN=1;SAF=58;SAP=128.956;SAR=0;SRF=34;SRP=76.8404;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:68:14,54:14:543:54:2090:-167.858,0,-28.746 ./.:.:.:.:.:.:.:. 0/1:24:20,4:20:775:4:156:-7.19257,0,-62.8533 dDocent_Contig_7306 12 . C T 533.915 . AB=0.291139;ABP=32.9436;AC=3;AF=0.5;AN=6;AO=23;CIGAR=1X;DP=79;DPB=79;DPRA=0;EPP=52.9542;EPPR=124.613;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=907;QR=2264;RO=56;RPL=0;RPP=52.9542;RPPR=124.613;RPR=23;RUN=1;SAF=23;SAP=52.9542;SAR=0;SRF=56;SRP=124.613;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:30:26,4:26:1056:4:143:-4.18483,0,-86.2964 0/1:14:12,2:12:490:2:77:-3.09378,0,-40.2367 0/1:35:18,17:18:718:17:687:-51.6233,0,-54.4082 dDocent_Contig_7307 30 . A T 916.096 . AB=0.392857;ABP=11.386;AC=3;AF=0.5;AN=6;AO=33;CIGAR=1M1X;DP=84;DPB=85.5;DPRA=0;EPP=74.6689;EPPR=107.241;GTI=0;LEN=1;MEANALT=1.33333;MQM=60;MQMR=60;NS=3;NUMALT=2;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=1342;QR=1905;RO=48;RPL=0;RPP=74.6689;RPPR=107.241;RPR=33;RUN=1;SAF=33;SAP=74.6689;SAR=0;SRF=48;SRP=107.241;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|1:51:29,0,22:29:1145:0,22:0,895:-65.5028,-74.2327,-168.435,0,-94.6035,-87.9808 0|1:5:4,0,1:4:159:0,1:0,41:-2.58942,-3.79354,-16.8744,0,-13.4878,-13.1868 0|1:28:15,3,10:15:601:3,10:108,406:-29.0045,-24.7197,-73.3253,0,-40.7415,-46.5353 dDocent_Contig_7308 68 . T G 187.504 . AB=0.4375;ABP=3.55317;AC=1;AF=0.166667;AN=6;AO=7;CIGAR=1X;DP=63;DPB=63;DPRA=0.680851;EPP=18.2106;EPPR=124.613;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=59.4821;NS=3;NUMALT=1;ODDS=8.67362e-19;PAIRED=1;PAIREDR=0.857143;PAO=0;PQA=0;PQR=0;PRO=0;QA=278;QR=2156;RO=56;RPL=7;RPP=18.2106;RPPR=124.613;RPR=0;RUN=1;SAF=7;SAP=18.2106;SAR=0;SRF=56;SRP=124.613;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:39:39,0:39:1514:0:0:0,-11.7402,-136.511 0/0:8:8,0:8:295:0:0:0,-2.40824,-26.8946 0/1:16:9,7:9:347:7:278:-20.5743,0,-26.064 dDocent_Contig_7309 63 . T A 531.247 . AB=0.381818;ABP=9.68264;AC=3;AF=0.5;AN=6;AO=21;CIGAR=1X;DP=55;DPB=55;DPRA=0;EPP=48.6112;EPPR=76.8404;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=0.904762;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=822;QR=1350;RO=34;RPL=21;RPP=48.6112;RPPR=76.8404;RPR=0;RUN=1;SAF=21;SAP=48.6112;SAR=0;SRF=34;SRP=76.8404;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:33:18,15:18:719:15:588:-43.3225,0,-55.1037 0/1:5:1,4:1:39:4:157:-13.0034,0,-2.39141 0/1:17:15,2:15:592:2:77:-2.19132,0,-48.5033 dDocent_Contig_7310 9 . C T 92.6672 . AB=0.148936;ABP=53.3238;AC=1;AF=0.166667;AN=6;AO=7;CIGAR=1X;DP=83;DPB=83;DPRA=2.61111;EPP=18.2106;EPPR=168.042;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=0.986842;PAO=0;PQA=0;PQR=0;PRO=0;QA=273;QR=2920;RO=76;RPL=0;RPP=18.2106;RPPR=168.042;RPR=7;RUN=1;SAF=7;SAP=18.2106;SAR=0;SRF=76;SRP=168.042;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:47:40,7:40:1544:7:273:-10.7896,0,-125.082 0/0:11:11,0:11:413:0:0:0,-3.31133,-37.5169 0/0:25:25,0:25:963:0:0:0,-7.52575,-86.9833 dDocent_Contig_7312 31 . T C 555.225 . AB=0.315068;ABP=24.6953;AC=3;AF=0.5;AN=6;AO=23;CIGAR=1X3M2X;DP=73;DPB=73;DPRA=0;EPP=52.9542;EPPR=107.241;GTI=0;LEN=1;MEANALT=1.66667;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=908;QR=1890;RO=48;RPL=0;RPP=52.9542;RPPR=107.241;RPR=23;RUN=1;SAF=23;SAP=52.9542;SAR=0;SRF=48;SRP=107.241;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|1:29:21,6:21:836:6:241:-13.5354,0,-67.0271 0|1:19:12,7:12:475:7:276:-19.4889,0,-37.383 0|1:25:15,10:15:579:10:391:-28.0212,0,-44.9214 dDocent_Contig_7313 140 . A G 535.06 . AB=0.360656;ABP=13.2981;AC=3;AF=0.5;AN=6;AO=22;CIGAR=1X;DP=61;DPB=61;DPRA=0;EPP=50.7827;EPPR=87.6977;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=848;QR=1476;RO=39;RPL=0;RPP=50.7827;RPPR=87.6977;RPR=22;RUN=1;SAF=0;SAP=50.7827;SAR=22;SRF=0;SRP=87.6977;SRR=39;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:31:20,11:20:768:11:433:-29.9927,0,-60.1132 0/1:13:7,6:7:257:6:235:-17.6082,0,-19.5651 0/1:17:12,5:12:451:5:180:-11.4279,0,-35.8175 dDocent_Contig_7314 34 . C T 234.734 . AB=0.148148;ABP=119.144;AC=2;AF=0.333333;AN=6;AO=27;CIGAR=1X;DP=268;DPB=268;DPRA=0;EPP=61.6401;EPPR=526.335;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=59.4191;NS=3;NUMALT=1;ODDS=0;PAIRED=0;PAIREDR=0.282158;PAO=0;PQA=0;PQR=0;PRO=0;QA=1098;QR=9534;RO=241;RPL=0;RPP=61.6401;RPPR=526.335;RPR=27;RUN=1;SAF=27;SAP=61.6401;SAR=0;SRF=241;SRP=526.335;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:160:149,11:149:5916:11:445:0,-7.75852,-490.962 0/1:36:31,5:31:1220:5:202:-7.72479,0,-99.1725 0/1:72:61,11:61:2398:11:451:-19.2715,0,-193.522 dDocent_Contig_7315 15 . C T 862.432 . AB=0.409091;ABP=4.58955;AC=3;AF=0.5;AN=6;AO=31;CIGAR=1X;DP=56;DPB=56;DPRA=0;EPP=70.3259;EPPR=57.2971;GTI=0;LEN=1;MEANALT=1;MQM=40.4516;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=0;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=1236;QR=1003;RO=25;RPL=0;RPP=70.3259;RPPR=57.2971;RPR=31;RUN=1;SAF=31;SAP=70.3259;SAR=0;SRF=25;SRP=57.2971;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:22:13,9:13:516:9:359:-21.1654,0,-40.1631 0/0:12:11,1:11:447:1:41:0,-0.209655,-37.1834 1/1:22:1,21:1:40:21:836:-66.5997,-2.62698,0 dDocent_Contig_7316 8 . T C 1183.4 . AB=0.0865385;ABP=157.435;AC=0;AF=0;AN=6;AO=9;CIGAR=1X1M2X1M1X2M1X2M1X2M1X1M1X;DP=104;DPB=104;DPRA=0;EPP=22.5536;EPPR=79.0118;GTI=0;LEN=1;MEANALT=3.33333;MQM=49;MQMR=60;NS=3;NUMALT=3;ODDS=2.77556e-17;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=353;QR=1355;RO=35;RPL=0;RPP=22.5536;RPPR=79.0118;RPR=9;RUN=1;SAF=9;SAP=22.5536;SAR=0;SRF=35;SRP=79.0118;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|0:63:22,6,12,22:22:849:6,12,22:236,460,859:-63.9951,-51.4283,-119.341,-32.8686,-83.3973,-98.9741,0,-50.5319,-31.9715,-63.0991 0|0:18:3,2,8,5:3:115:2,8,5:77,311,199:-31.6091,-26.2559,-35.0911,-6.95791,-10.1384,-13.9856,-16.1224,-19.3036,0,-24.0553 0|0:23:10,1,2,10:10:391:1,2,10:40,68,381:-28.2587,-28.0147,-59.8684,-25.7597,-54.6578,-57.3088,0,-28.9184,-26.6641,-29.1617 dDocent_Contig_7317 51 . T C 904.566 . AB=0.324074;ABP=32.0437;AC=3;AF=0.5;AN=6;AO=35;CIGAR=1X;DP=108;DPB=108;DPRA=0;EPP=79.0118;EPPR=161.528;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=59.2192;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=0.958904;PAO=0;PQA=0;PQR=0;PRO=0;QA=1415;QR=2803;RO=73;RPL=35;RPP=79.0118;RPPR=152.961;RPR=0;RUN=1;SAF=35;SAP=79.0118;SAR=0;SRF=72;SRP=152.961;SRR=1;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:72:53,19:53:2016:19:772:-48.1256,0,-159.962 0/1:5:1,4:1:37:4:163:-13.5533,0,-2.19268 0/1:31:19,12:19:750:12:480:-34.2165,0,-57.8872 dDocent_Contig_7318 20 . G A 161.428 . AB=0.216216;ABP=28.8919;AC=1;AF=0.166667;AN=6;AO=8;CIGAR=1X;DP=95;DPB=95;DPRA=1.27586;EPP=20.3821;EPPR=191.928;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=316;QR=3413;RO=87;RPL=0;RPP=20.3821;RPPR=191.928;RPR=8;RUN=1;SAF=8;SAP=20.3821;SAR=0;SRF=87;SRP=191.928;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:37:29,8:29:1150:8:316:-17.6657,0,-92.6444 0/0:13:13,0:13:516:0:0:0,-3.91339,-46.787 0/0:45:45,0:45:1747:0:0:0,-13.5463,-157.445 dDocent_Contig_7321 94 . T C 53.9659 . AB=0.15625;ABP=35.8538;AC=1;AF=0.166667;AN=6;AO=5;CIGAR=1X;DP=55;DPB=55;DPRA=2.78261;EPP=13.8677;EPPR=111.584;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=180;QR=1791;RO=50;RPL=5;RPP=13.8677;RPPR=111.584;RPR=0;RUN=1;SAF=5;SAP=13.8677;SAR=0;SRF=50;SRP=111.584;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:32:27,5:27:967:5:180:-6.91911,0,-77.7144 0/0:2:2,0:2:71:0:0:0,-0.60206,-6.74206 0/0:21:21,0:21:753:0:0:0,-6.32163,-68.0967 dDocent_Contig_7322 49 . T G 2935.39 . AB=0.836538;ABP=105.32;AC=4;AF=0.666667;AN=6;AO=94;CIGAR=1X;DP=111;DPB=111;DPRA=0;EPP=207.129;EPPR=39.9253;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=0.968085;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=3638;QR=674;RO=17;RPL=0;RPP=207.129;RPPR=39.9253;RPR=94;RUN=1;SAF=94;SAP=207.129;SAR=0;SRF=17;SRP=39.9253;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:78:7,71:7:281:71:2747:-223.91,0,-2.182 1/1:7:0,7:0:0:7:273:-24.9375,-2.10721,0 0/1:26:10,16:10:393:16:618:-48.129,0,-27.9005 dDocent_Contig_7323 153 . T A 56.6361 . AB=0.111111;ABP=62.1226;AC=4;AF=0.666667;AN=6;AO=6;CIGAR=1M1I1M1X;DP=46;DPB=48;DPRA=0;EPP=16.0391;EPPR=89.8692;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=237;QR=1603;RO=40;RPL=0;RPP=16.0391;RPPR=89.8692;RPR=6;RUN=1;SAF=0;SAP=16.0391;SAR=6;SRF=0;SRP=89.8692;SRR=40;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|1:30:27,3:27:1085:3:117:-1.8788,0,-88.9089 1|1:1:0,1:0:0:1:41:-4.09457,-0.30103,0 0|1:15:13,2:13:518:2:79:-2.98179,0,-42.4509 dDocent_Contig_7325 47 . A T 124.343 . AB=0.16;ABP=53.2147;AC=2;AF=0.333333;AN=6;AO=8;CIGAR=1X;DP=55;DPB=55;DPRA=5;EPP=20.3821;EPPR=105.07;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=3.46945e-18;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=320;QR=1840;RO=47;RPL=0;RPP=20.3821;RPPR=105.07;RPR=8;RUN=1;SAF=8;SAP=20.3821;SAR=0;SRF=47;SRP=105.07;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:36:33,3:33:1285:3:119:-0.257935,0,-105.081 0/0:5:5,0:5:197:0:0:0,-1.50515,-18.1032 0/1:14:9,5:9:358:5:201:-14.2556,0,-28.3677 dDocent_Contig_7326 7 . T A 466.323 . AB=0.372549;ABP=10.206;AC=2;AF=0.333333;AN=6;AO=19;CIGAR=1X;DP=56;DPB=56;DPRA=5.1;EPP=44.2683;EPPR=83.3548;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=720;QR=1424;RO=37;RPL=0;RPP=44.2683;RPPR=83.3548;RPR=19;RUN=1;SAF=19;SAP=44.2683;SAR=0;SRF=37;SRP=83.3548;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:26:21,5:21:803:5:189:-9.54848,0,-64.7669 0/0:5:5,0:5:193:0:0:0,-1.50515,-17.7414 0/1:25:11,14:11:428:14:531:-40.6067,0,-31.3496 dDocent_Contig_7328 29 . G A 114.565 . AB=0;ABP=0;AC=2;AF=0.333333;AN=6;AO=3;CIGAR=1X;DP=35;DPB=35;DPRA=0.1875;EPP=9.52472;EPPR=72.4974;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=121;QR=1257;RO=32;RPL=0;RPP=9.52472;RPPR=72.4974;RPR=3;RUN=1;SAF=3;SAP=9.52472;SAR=0;SRF=32;SRP=72.4974;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:22:22,0:22:869:0:0:0,-6.62266,-78.5154 1/1:3:0,3:0:0:3:121:-11.2802,-0.90309,0 0/0:10:10,0:10:388:0:0:0,-3.0103,-35.2683 dDocent_Contig_7329 15 . A C 331.312 . AB=0.351351;ABP=10.1116;AC=1;AF=0.166667;AN=6;AO=14;CIGAR=1X2M1X;DP=58;DPB=58;DPRA=3.125;EPP=33.4109;EPPR=98.5551;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=543;QR=1746;RO=44;RPL=0;RPP=33.4109;RPPR=98.5551;RPR=14;RUN=1;SAF=14;SAP=33.4109;SAR=0;SRF=44;SRP=98.5551;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|1:37:24,13:24:952:13:505:-34.653,0,-74.8465 0|0:13:12,1:12:476:1:38:0,-0.116121,-39.3943 0|0:8:8,0:8:318:0:0:0,-2.40824,-28.9865 dDocent_Contig_7330 97 . C A 694.032 . AB=0.467532;ABP=3.71532;AC=3;AF=0.5;AN=6;AO=36;CIGAR=1X;DP=77;DPB=77;DPRA=0;EPP=81.1833;EPPR=92.0407;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=6.93889e-18;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=1080;QR=1343;RO=41;RPL=36;RPP=81.1833;RPPR=92.0407;RPR=0;RUN=1;SAF=36;SAP=81.1833;SAR=0;SRF=41;SRP=92.0407;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:53:28,25:28:924:25:771:-53.7275,0,-67.5059 0/1:4:1,3:1:35:3:80:-6.26168,0,-2.29451 0/1:20:12,8:12:384:8:229:-14.869,0,-28.8471 dDocent_Contig_7331 8 . T G 111.463 . AB=0.0833333;ABP=57.2971;AC=2;AF=0.333333;AN=6;AO=5;CIGAR=2X2M;DP=102;DPB=102;DPRA=0;EPP=13.8677;EPPR=196.271;GTI=0;LEN=1;MEANALT=2;MQM=60;MQMR=60;NS=3;NUMALT=2;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=182;QR=3443;RO=89;RPL=0;RPP=13.8677;RPPR=196.271;RPR=5;RUN=1;SAF=5;SAP=13.8677;SAR=0;SRF=89;SRP=196.271;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|0:66:63,1,2:63:2428:1,2:39,70:0,-15.7457,-214.838,-13.2966,-209.445,-212.049 0|1:14:10,2,2:10:393:2,2:79,73:-3.50557,0,-31.7472,-0.566528,-26.3896,-32.2889 0|1:22:16,5,1:16:622:5,1:194,39:-11.1219,0,-49.6068,-12.7322,-47.906,-63.5448 dDocent_Contig_7332 29 . T G 70.4805 . AB=0.375;ABP=4.09604;AC=1;AF=0.166667;AN=6;AO=8;CIGAR=1X;DP=148;DPB=148;DPRA=2.58333;EPP=20.3821;EPPR=307.016;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=317;QR=5654;RO=140;RPL=0;RPP=20.3821;RPPR=307.016;RPR=8;RUN=1;SAF=8;SAP=20.3821;SAR=0;SRF=140;SRP=307.016;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:116:111,5:111:4477:5:196:0,-16.9048,-384.83 0/1:8:5,3:5:205:3:121:-8.87196,0,-16.4268 0/0:24:24,0:24:972:0:0:0,-7.22472,-87.7786 dDocent_Contig_7333 84 . A G 376.145 . AB=0.533333;ABP=3.29983;AC=2;AF=0.333333;AN=6;AO=20;CIGAR=1X;DP=81;DPB=81;DPRA=0;EPP=46.4397;EPPR=135.47;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=685;QR=2060;RO=61;RPL=20;RPP=46.4397;RPPR=135.47;RPR=0;RUN=1;SAF=20;SAP=46.4397;SAR=0;SRF=61;SRP=135.47;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:51:47,4:47:1594:4:140:0,-2.4076,-130.807 0/1:5:1,4:1:31:4:133:-10.7937,0,-1.5943 0/1:25:13,12:13:435:12:412:-29.8845,0,-31.9461 dDocent_Contig_7335 20 . G A 69.129 . AB=0.190476;ABP=20.4855;AC=1;AF=0.166667;AN=6;AO=8;CIGAR=1X;DP=87;DPB=87;DPRA=0;EPP=20.3821;EPPR=174.557;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=322;QR=3107;RO=79;RPL=0;RPP=20.3821;RPPR=174.557;RPR=8;RUN=1;SAF=8;SAP=20.3821;SAR=0;SRF=79;SRP=174.557;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:33:31,2:31:1228:2:78:0,-2.53069,-103.384 0/0:33:31,2:31:1214:2:81:0,-2.24826,-101.843 0/1:21:17,4:17:665:4:163:-8.7368,0,-53.8573 dDocent_Contig_7336 13 . T C 295.994 . AB=0.214286;ABP=52.644;AC=2;AF=0.333333;AN=6;AO=15;CIGAR=1X;DP=73;DPB=73;DPRA=11.6667;EPP=35.5824;EPPR=128.956;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=594;QR=2147;RO=58;RPL=0;RPP=35.5824;RPPR=128.956;RPR=15;RUN=1;SAF=15;SAP=35.5824;SAR=0;SRF=58;SRP=128.956;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:46:36,10:36:1331:10:393:-21.8763,0,-106.223 0/0:3:3,0:3:112:0:0:0,-0.90309,-10.4467 0/1:24:19,5:19:704:5:201:-11.2458,0,-56.4549 dDocent_Contig_7337 11 . A T 74.8662 . AB=0.210526;ABP=16.8392;AC=1;AF=0.166667;AN=6;AO=4;CIGAR=1X1M1X;DP=29;DPB=29;DPRA=3.8;EPP=11.6962;EPPR=57.2971;GTI=0;LEN=1;MEANALT=1;MQM=57;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=160;QR=987;RO=25;RPL=0;RPP=11.6962;RPPR=57.2971;RPR=4;RUN=1;SAF=4;SAP=11.6962;SAR=0;SRF=25;SRP=57.2971;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|1:19:15,4:15:597:4:160:-9.00914,0,-48.3504 0|0:2:2,0:2:78:0:0:0,-0.60206,-7.4033 0|0:8:8,0:8:312:0:0:0,-2.40824,-28.441 dDocent_Contig_7338 7 . T A 285.025 . AB=0.264151;ABP=28.6173;AC=2;AF=0.333333;AN=6;AO=18;CIGAR=1X;DP=108;DPB=108;DPRA=0;EPP=42.0968;EPPR=196.271;GTI=0;LEN=1;MEANALT=1.33333;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=681;QR=3370;RO=89;RPL=0;RPP=42.0968;RPPR=196.271;RPR=18;RUN=1;SAF=18;SAP=42.0968;SAR=0;SRF=89;SRP=196.271;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:55:50,4:50:1890:4:156:0,-2.14024,-155.95 0/1:13:11,2:11:412:2:78:-3.49008,0,-33.5154 0/1:40:28,12:28:1068:12:447:-28.5307,0,-84.3853 dDocent_Contig_7340 41 . T C 45.2356 . AB=0.176471;ABP=18.4661;AC=1;AF=0.166667;AN=6;AO=3;CIGAR=1X;DP=44;DPB=44;DPRA=1.25926;EPP=9.52472;EPPR=92.0407;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=123;QR=1589;RO=41;RPL=0;RPP=9.52472;RPPR=92.0407;RPR=3;RUN=1;SAF=3;SAP=9.52472;SAR=0;SRF=41;SRP=92.0407;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:24:24,0:24:955:0:0:0,-7.22472,-86.2481 0/0:3:3,0:3:116:0:0:0,-0.90309,-10.817 0/1:17:14,3:14:518:3:123:-6.34728,0,-41.8231 dDocent_Contig_7342 69 . A T 91.78 . 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T C 96.9736 . AB=0.277778;ABP=10.7311;AC=2;AF=0.333333;AN=6;AO=5;CIGAR=1X1M2X3M3I1M2X2M2I4M;DP=24;DPB=25.8125;DPRA=1.5;EPP=13.8677;EPPR=42.0968;GTI=0;LEN=1;MEANALT=1.5;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=199;QR=698;RO=18;RPL=0;RPP=13.8677;RPPR=42.0968;RPR=5;RUN=1;SAF=5;SAP=13.8677;SAR=0;SRF=18;SRP=42.0968;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|1:15:11,3:11:427:3:120:-6.61122,0,-34.2147 0|1:3:1,2:1:39:2:79:-6.59454,0,-2.99347 0|0:6:6,0:6:232:0:0:0,-1.80618,-21.2486 dDocent_Contig_7364 16 . T A 141.742 . AB=0.225806;ABP=23.254;AC=1;AF=0.166667;AN=6;AO=7;CIGAR=1X;DP=44;DPB=44;DPRA=4.76923;EPP=10.7656;EPPR=83.3548;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=1.73472e-18;PAIRED=0;PAIREDR=0.972973;PAO=0;PQA=0;PQR=0;PRO=0;QA=274;QR=1393;RO=37;RPL=0;RPP=18.2106;RPPR=83.3548;RPR=7;RUN=1;SAF=1;SAP=10.7656;SAR=6;SRF=37;SRP=83.3548;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:31:24,7:24:916:7:274:-15.6963,0,-73.4233 0/0:1:1,0:1:40:0:0:0,-0.30103,-3.99568 0/0:12:12,0:12:437:0:0:0,-3.61236,-39.6693 dDocent_Contig_7366 29 . C T 97.8219 . AB=0.363636;ABP=4.78696;AC=1;AF=0.166667;AN=6;AO=4;CIGAR=1X1M1X;DP=32;DPB=32;DPRA=1.83333;EPP=11.6962;EPPR=59.4686;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=2;ODDS=0;PAIRED=0.75;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=154;QR=1043;RO=26;RPL=0;RPP=11.6962;RPPR=59.4686;RPR=4;RUN=1;SAF=4;SAP=11.6962;SAR=0;SRF=26;SRP=59.4686;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|1:11:7,4,0:7:282:4,0:154,0:-10.9217,0,-22.4418,-13.0289,-23.646,-36.2838 0|0:15:13,0,2:13:522:0,2:0,72:-2.31887,-6.23226,-49.2795,0,-43.4124,-42.8104 0|0:6:6,0,0:6:239:0,0:0,0:0,-1.80618,-21.885,-1.80618,-21.885,-21.885 dDocent_Contig_7367 21 . G A 120.733 . AB=0.150943;ABP=59.0998;AC=2;AF=0.333333;AN=6;AO=8;CIGAR=1X;DP=72;DPB=72;DPRA=1.39474;EPP=20.3821;EPPR=141.985;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=3.46945e-18;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=325;QR=2537;RO=64;RPL=0;RPP=20.3821;RPPR=141.985;RPR=8;RUN=1;SAF=8;SAP=20.3821;SAR=0;SRF=64;SRP=141.985;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:41:34,7:34:1355:7:284:-13.5918,0,-109.872 0/1:12:11,1:11:426:1:41:-0.482207,0,-35.0761 0/0:19:19,0:19:756:0:0:0,-5.71957,-68.3604 dDocent_Contig_7368 78 . T G 1334.24 . 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AB=0.136364;ABP=28.2783;AC=1;AF=0.166667;AN=6;AO=3;CIGAR=1X;DP=33;DPB=33;DPRA=4;EPP=9.52472;EPPR=68.1545;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=120;QR=1204;RO=30;RPL=0;RPP=9.52472;RPPR=68.1545;RPR=3;RUN=1;SAF=3;SAP=9.52472;SAR=0;SRF=30;SRP=68.1545;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:22:19,3:19:760:3:120:-4.56503,0,-62.0975 0/0:6:6,0:6:240:0:0:0,-1.80618,-21.9751 0/0:5:5,0:5:204:0:0:0,-1.50515,-18.744 dDocent_Contig_7370 19 . G A 453.951 . AB=0.409091;ABP=6.16881;AC=3;AF=0.5;AN=6;AO=18;CIGAR=1X;DP=44;DPB=44;DPRA=0;EPP=42.0968;EPPR=59.4686;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=58.4615;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=0.961538;PAO=0;PQA=0;PQR=0;PRO=0;QA=700;QR=1055;RO=26;RPL=0;RPP=42.0968;RPPR=59.4686;RPR=18;RUN=1;SAF=18;SAP=42.0968;SAR=0;SRF=26;SRP=59.4686;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:23:12,11:12:488:11:418:-31.0426,0,-37.3478 0/1:5:4,1:4:159:1:40:-2.49053,0,-11.7014 0/1:16:10,6:10:408:6:242:-17.3405,0,-32.2557 dDocent_Contig_7371 26 . C A 522.037 . 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A T 476.777 . AB=0.4;ABP=6.91895;AC=2;AF=0.333333;AN=6;AO=19;CIGAR=1X;DP=65;DPB=65;DPRA=0;EPP=44.2683;EPPR=100.727;GTI=0;LEN=1;MEANALT=1.33333;MQM=58.4211;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=760;QR=1771;RO=45;RPL=0;RPP=44.2683;RPPR=100.727;RPR=19;RUN=1;SAF=19;SAP=44.2683;SAR=0;SRF=45;SRP=100.727;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:34:22,12:22:873:12:477:-32.264,0,-68.6479 0/1:11:5,6:5:193:6:243:-18.9366,0,-14.4285 0/0:20:18,1:18:705:1:40:0,-2.10857,-59.7915 dDocent_Contig_7375 53 . T C 67.4949 . AB=0.181818;ABP=12.6832;AC=3;AF=0.5;AN=6;AO=4;CIGAR=1X;DP=28;DPB=28;DPRA=0;EPP=11.6962;EPPR=55.1256;GTI=0;LEN=1;MEANALT=1;MQM=53.5;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=0;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=160;QR=937;RO=24;RPL=4;RPP=11.6962;RPPR=55.1256;RPR=0;RUN=1;SAF=4;SAP=11.6962;SAR=0;SRF=24;SRP=55.1256;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:16:15,1:15:590:1:40:0,-1.51377,-50.1335 1/1:1:0,1:0:0:1:39:-3.89656,-0.30103,0 0/1:11:9,2:9:347:2:81:-4.3744,0,-28.2779 dDocent_Contig_7376 30 . G C 47.2399 . AB=0.128205;ABP=49.8362;AC=1;AF=0.166667;AN=6;AO=14;CIGAR=1X;DP=273;DPB=273;DPRA=0;EPP=33.4109;EPPR=533.155;GTI=0;LEN=1;MEANALT=1.33333;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=0.96875;PAO=0;PQA=0;PQR=0;PRO=0;QA=565;QR=10085;RO=256;RPL=0;RPP=33.4109;RPPR=558.907;RPR=14;RUN=1;SAF=14;SAP=33.4109;SAR=0;SRF=253;SRP=533.155;SRR=3;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:135:127,8:127:5051:8:325:0,-11.0196,-424.847 0/1:39:34,5:34:1336:5:199:-6.54789,0,-108.765 0/0:99:95,1:95:3698:1:41:0,-25.2129,-328.759 dDocent_Contig_7377 21 . T G 1285.44 . AB=0.181818;ABP=22.3561;AC=1;AF=0.166667;AN=6;AO=4;CIGAR=1X1M1X;DP=76;DPB=76;DPRA=0;EPP=11.6962;EPPR=65.983;GTI=0;LEN=1;MEANALT=2;MQM=60;MQMR=60;NS=3;NUMALT=2;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=157;QR=1156;RO=29;RPL=0;RPP=11.6962;RPPR=65.983;RPR=4;RUN=1;SAF=4;SAP=11.6962;SAR=0;SRF=29;SRP=65.983;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|0:27:12,0,15:12:479:0,15:0,596:-45.848,-49.4604,-88.9078,0,-39.8454,-35.3299 1|0:22:3,4,15:3:121:4,15:157,588:-50.375,-38.3659,-47.1379,-2.92706,0,-8.39046 0|0:27:14,0,13:14:556:0,13:0,507:-37.8441,-42.0585,-87.8333,0,-46.1679,-42.2545 dDocent_Contig_7378 10 . T A 236.929 . 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T C 52.2447 . AB=0.166667;ABP=37.7539;AC=3;AF=0.5;AN=6;AO=6;CIGAR=1X;DP=36;DPB=36;DPRA=0;EPP=16.0391;EPPR=68.1545;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=227;QR=1129;RO=30;RPL=6;RPP=16.0391;RPPR=68.1545;RPR=0;RUN=1;SAF=6;SAP=16.0391;SAR=0;SRF=30;SRP=68.1545;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:27:24,3:24:917:3:117:-2.78257,0,-74.7157 0/1:7:5,2:5:175:2:73:-4.82409,0,-13.986 0/1:2:1,1:1:37:1:37:-3.09577,0,-3.09577 dDocent_Contig_7386 26 . T C 34.5618 . 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AB=0.697368;ABP=28.7251;AC=4;AF=0.666667;AN=6;AO=56;CIGAR=1X;DP=79;DPB=79;DPRA=0;EPP=124.613;EPPR=52.9542;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=3.46945e-18;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=2170;QR=908;RO=23;RPL=0;RPP=124.613;RPPR=52.9542;RPR=56;RUN=1;SAF=0;SAP=124.613;SAR=56;SRF=0;SRP=52.9542;SRR=23;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:46:16,30:16:639:30:1151:-90.0243,0,-43.9945 1/1:3:0,3:0:0:3:119:-11.095,-0.90309,0 0/1:30:7,23:7:269:23:900:-72.2803,0,-15.5411 dDocent_Contig_7390 25 . T A 209.553 . AB=0.109756;ABP=111.478;AC=1;AF=0.166667;AN=6;AO=9;CIGAR=13M1X1M;DP=115;DPB=88.9333;DPRA=4.1;EPP=22.5536;EPPR=135.47;GTI=0;LEN=1;MEANALT=2;MQM=60;MQMR=60;NS=3;NUMALT=3;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=368;QR=2391;RO=61;RPL=0;RPP=22.5536;RPPR=135.47;RPR=9;RUN=1;SAF=9;SAP=22.5536;SAR=0;SRF=61;SRP=135.47;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|1:82:44,0,9,0:44:1735:0,9,0:0,368,0:-17.1253,-30.3706,-173.113,0,-142.744,-140.034,-30.3706,-173.113,-142.744,-173.113 0|0:13:6,3,0,2:6:226:3,0,2:112,0,79:-7.3526,0,-17.5979,-9.15878,-18.501,-27.6683,-2.65564,-11.9982,-21.1655,-20.5635 0|0:20:11,0,0,0:11:430:0,0,0:0,0,0:0,-3.31133,-38.6627,-3.31133,-38.6627,-38.6627,-3.31133,-38.6627,-38.6627,-38.6627 dDocent_Contig_7391 14 . T A 439.645 . AB=0.333333;ABP=16.0391;AC=3;AF=0.5;AN=6;AO=18;CIGAR=2X;DP=54;DPB=54;DPRA=0;EPP=42.0968;EPPR=50.3001;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=0;PAIREDR=0.583333;PAO=0;PQA=0;PQR=0;PRO=0;QA=718;QR=1420;RO=36;RPL=0;RPP=42.0968;RPPR=81.1833;RPR=18;RUN=1;SAF=18;SAP=42.0968;SAR=0;SRF=32;SRP=50.3001;SRR=4;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|1:25:20,5:20:774:5:199:-10.7621,0,-62.4547 0|1:12:7,5:7:283:5:199:-14.6751,0,-22.231 0|1:17:9,8:9:363:8:320:-24.0502,0,-27.9166 dDocent_Contig_7392 10 . T G 374.938 . AB=0.310345;ABP=12.0706;AC=3;AF=0.5;AN=6;AO=15;CIGAR=1X;DP=50;DPB=50;DPRA=0;EPP=35.5824;EPPR=79.0118;GTI=0;LEN=1;MEANALT=1;MQM=44.6;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=0;PAIREDR=0.914286;PAO=0;PQA=0;PQR=0;PRO=0;QA=586;QR=1410;RO=35;RPL=0;RPP=35.5824;RPPR=79.0118;RPR=15;RUN=1;SAF=15;SAP=35.5824;SAR=0;SRF=35;SRP=79.0118;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:29:20,9:20:808:9:353:-21.2596,0,-64.3065 1/1:5:0,5:0:0:5:202:-17.757,-1.50515,0 0/0:16:15,1:15:602:1:31:0,-1.71717,-51.4195 dDocent_Contig_7394 11 . G T 489.865 . AB=0.0670732;ABP=269.995;AC=1;AF=0.166667;AN=6;AO=11;CIGAR=2X;DP=164;DPB=164;DPRA=0;EPP=26.8965;EPPR=276.616;GTI=0;LEN=1;MEANALT=2.33333;MQM=60;MQMR=60;NS=3;NUMALT=2;ODDS=1.38778e-17;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=431;QR=4878;RO=126;RPL=0;RPP=26.8965;RPPR=276.616;RPR=11;RUN=1;SAF=11;SAP=26.8965;SAR=0;SRF=126;SRP=276.616;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|0:109:93,5,10:93:3626:5,10:193,405:-5.41846,-17.5695,-314.094,0,-282.202,-295.04 0|1:18:14,3,1:14:536:3,1:116,40:-5.30322,0,-43.0666,-6.21925,-40.6735,-49.9007 0|0:37:19,3,15:19:716:3,15:122,601:-43.7876,-39.4429,-97.1926,0,-48.5731,-54.125 dDocent_Contig_7396 38 . C T 725.707 . AB=0.380282;ABP=11.8491;AC=3;AF=0.5;AN=6;AO=27;CIGAR=1X;DP=71;DPB=71;DPRA=0;EPP=61.6401;EPPR=98.5551;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=0;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=1093;QR=1734;RO=44;RPL=0;RPP=61.6401;RPPR=98.5551;RPR=27;RUN=1;SAF=27;SAP=61.6401;SAR=0;SRF=44;SRP=98.5551;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:45:23,22:23:908:22:889:-66.7677,0,-68.4714 0/1:15:12,3:12:471:3:122:-6.85704,0,-38.2236 0/1:11:9,2:9:355:2:82:-4.46835,0,-28.9972 dDocent_Contig_7398 7 . T G 147.1 . AB=0.310345;ABP=12.0706;AC=2;AF=0.333333;AN=6;AO=10;CIGAR=1X;DP=38;DPB=38;DPRA=0;EPP=24.725;EPPR=63.8115;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=1.73472e-18;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=302;QR=1067;RO=28;RPL=0;RPP=24.725;RPPR=63.8115;RPR=10;RUN=1;SAF=10;SAP=24.725;SAR=0;SRF=28;SRP=63.8115;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:13:11,2:11:425:2:78:-3.49008,0,-34.6905 0/1:16:9,7:9:343:7:214:-14.7381,0,-26.41 0/0:9:8,1:8:299:1:10:0,-1.70927,-26.2633 dDocent_Contig_7399 113 . T G 141.478 . AB=0.212766;ABP=36.6912;AC=2;AF=0.333333;AN=6;AO=10;CIGAR=1X;DP=50;DPB=50;DPRA=7.83333;EPP=24.725;EPPR=89.8692;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=346;QR=1359;RO=40;RPL=0;RPP=24.725;RPPR=89.8692;RPR=10;RUN=1;SAF=0;SAP=24.725;SAR=10;SRF=0;SRP=89.8692;SRR=40;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:37:30,7:30:1025:7:243:-11.0708,0,-81.4195 0/0:3:3,0:3:102:0:0:0,-0.90309,-9.5168 0/1:10:7,3:7:232:3:103:-6.59972,0,-18.1949 dDocent_Contig_7400 172 . A C 117.349 . AB=0;ABP=0;AC=2;AF=0.333333;AN=6;AO=4;CIGAR=1X3M1X;DP=23;DPB=23;DPRA=0.421053;EPP=11.6962;EPPR=44.2683;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=125;QR=712;RO=19;RPL=4;RPP=11.6962;RPPR=44.2683;RPR=0;RUN=1;SAF=0;SAP=11.6962;SAR=4;SRF=0;SRP=44.2683;SRR=19;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|0:11:11,0:11:415:0:0:0,-3.31133,-37.6965 1|1:4:0,4:0:0:4:125:-11.5587,-1.20412,0 0|0:8:8,0:8:297:0:0:0,-2.40824,-27.0803 dDocent_Contig_7402 55 . G A 832.251 . AB=0.442623;ABP=4.7546;AC=4;AF=0.666667;AN=6;AO=30;CIGAR=1X;DP=64;DPB=64;DPRA=0;EPP=68.1545;EPPR=76.8404;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=1156;QR=1307;RO=34;RPL=30;RPP=68.1545;RPPR=76.8404;RPR=0;RUN=1;SAF=30;SAP=68.1545;SAR=0;SRF=34;SRP=76.8404;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:37:23,14:23:911:14:545:-38.2532,0,-71.1578 1/1:3:0,3:0:0:3:118:-11.0029,-0.90309,0 0/1:24:11,13:11:396:13:493:-37.4917,0,-28.7533 dDocent_Contig_7403 85 . C G 216.675 . AB=0.434783;ABP=3.86001;AC=2;AF=0.333333;AN=6;AO=12;CIGAR=1X;DP=53;DPB=53;DPRA=0;EPP=29.068;EPPR=92.0407;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=419;QR=1488;RO=41;RPL=12;RPP=29.068;RPPR=92.0407;RPR=0;RUN=1;SAF=12;SAP=29.068;SAR=0;SRF=41;SRP=92.0407;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:30:28,2:28:1021:2:70:0,-2.3835,-85.5571 0/1:12:10,2:10:359:2:73:-3.31894,0,-29.0402 0/1:11:3,8:3:108:8:276:-21.8645,0,-6.76384 dDocent_Contig_7404 7 . T C 533.688 . AB=0.44898;ABP=4.11819;AC=3;AF=0.5;AN=6;AO=22;CIGAR=1X;DP=49;DPB=49;DPRA=0;EPP=50.7827;EPPR=61.6401;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=3.46945e-18;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=806;QR=1042;RO=27;RPL=0;RPP=50.7827;RPPR=61.6401;RPR=22;RUN=1;SAF=22;SAP=50.7827;SAR=0;SRF=27;SRP=61.6401;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:31:18,13:18:699:13:459:-32.3029,0,-53.9123 0/1:4:3,1:3:115:1:39:-2.69244,0,-9.52077 0/1:14:6,8:6:228:8:308:-23.8679,0,-16.6699 dDocent_Contig_7405 107 . N A 95.5921 . AB=0;ABP=0;AC=2;AF=1;AN=2;AO=3;CIGAR=1X;DP=3;DPB=3;DPRA=0;EPP=9.52472;EPPR=0;GTI=0;LEN=1;MEANALT=1;MQM=48;MQMR=0;NS=1;NUMALT=1;ODDS=6.68461;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=103;QR=0;RO=0;RPL=0;RPP=9.52472;RPPR=0;RPR=3;RUN=1;SAF=0;SAP=9.52472;SAR=3;SRF=0;SRP=0;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 1/1:3:0,3:0:0:3:103:-9.55867,-0.90309,0 ./.:.:.:.:.:.:.:. ./.:.:.:.:.:.:.:. dDocent_Contig_7407 124 . G A 86.0055 . AB=0.157895;ABP=41.6397;AC=0;AF=0;AN=6;AO=8;CIGAR=1X2M1X;DP=70;DPB=70;DPRA=8.25;EPP=20.3821;EPPR=42.0968;GTI=0;LEN=1;MEANALT=2;MQM=5;MQMR=60;NS=3;NUMALT=2;ODDS=3.46945e-18;PAIRED=0;PAIREDR=0.888889;PAO=0;PQA=0;PQR=0;PRO=0;QA=272;QR=580;RO=18;RPL=0;RPP=20.3821;RPPR=42.0968;RPR=8;RUN=1;SAF=0;SAP=20.3821;SAR=8;SRF=0;SRP=42.0968;SRR=18;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|0:38:5,6,27:5:166:6,27:205,913:-8.00219,-8.6196,-20.2839,0,-12.8201,-5.43031 0|0:4:0,0,4:0:0:0,4:0,124:-2.11872,-2.11872,-2.11872,-1.20412,-1.20412,0 0|0:28:13,2,13:13:414:2,13:67,448:0,-3.61703,-36.483,-1.25673,-34.5648,-30.9128 dDocent_Contig_7408 35 . C A 370.695 . AB=0.125;ABP=22.5536;AC=0;AF=0;AN=6;AO=2;CIGAR=2X1M2X;DP=44;DPB=44;DPRA=0;EPP=7.35324;EPPR=55.1256;GTI=0;LEN=1;MEANALT=2;MQM=46.5;MQMR=60;NS=3;NUMALT=4;ODDS=0;PAIRED=0;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=80;QR=951;RO=24;RPL=0;RPP=7.35324;RPPR=55.1256;RPR=2;RUN=1;SAF=2;SAP=7.35324;SAR=0;SRF=24;SRP=55.1256;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|0:16:8,6,2,0,0:8:318:6,2,0,0:241,80,0,0:-17.435,0,-24.3832,-13.4696,-19.8144,-39.0474,-19.8433,-26.1894,-39.6494,-46.0249,-19.8433,-26.1894,-39.6494,-46.0249,-46.0249 0|0:11:7,0,0,0,4:7:280:0,0,0,4:0,0,0,161:-11.5642,-13.6714,-36.7352,-13.6714,-36.7352,-36.7352,-13.6714,-36.7352,-36.7352,-36.7352,0,-23.4649,-23.4649,-23.4649,-22.2608 0|0:17:9,0,0,3,5:9:353:0,0,3,5:0,0,116,198:-13.5932,-16.3025,-45.3335,-16.3025,-45.3335,-45.3335,-6.79527,-35.8239,-35.8239,-34.9208,0,-29.0356,-29.0356,-19.5262,-27.5304 dDocent_Contig_7409 9 . A G 120.54 . AB=0.25;ABP=11.6962;AC=2;AF=0.333334;AN=6;AO=4;CIGAR=1X3M;DP=29;DPB=29;DPRA=1.6;EPP=11.6962;EPPR=52.9542;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=2;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=150;QR=880;RO=23;RPL=0;RPP=11.6962;RPPR=52.9542;RPR=4;RUN=1;SAF=4;SAP=11.6962;SAR=0;SRF=23;SRP=52.9542;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|1:16:12,0,4:12:447:0,4:0,150:-9.04819,-12.6605,-49.245,0,-36.9585,-35.7544 0|1:3:1,2,0:1:36:2,0:78,0:-6.50038,0,-2.69518,-6.80141,-3.29724,-9.72889 0|0:10:10,0,0:10:397:0,0:0,0:0,-3.0103,-36.0899,-3.0103,-36.0899,-36.0899 dDocent_Contig_7410 7 . T C 41.901 . AB=0.142857;ABP=34.0313;AC=1;AF=0.166667;AN=6;AO=4;CIGAR=1X1M1X;DP=58;DPB=58;DPRA=1.86667;EPP=11.6962;EPPR=118.098;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=153;QR=2002;RO=53;RPL=0;RPP=11.6962;RPPR=118.098;RPR=4;RUN=1;SAF=4;SAP=11.6962;SAR=0;SRF=53;SRP=118.098;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|1:28:24,4:24:910:4:153:-5.7129,0,-73.789 0|0:5:5,0:5:192:0:0:0,-1.50515,-17.65 0|0:25:24,0:24:900:0:0:0,-7.22472,-80.9668 dDocent_Contig_7412 8 . T C 3989.78 . AB=0.818713;ABP=153.883;AC=3;AF=0.5;AN=6;AO=140;CIGAR=1X;DP=171;DPB=171;DPRA=0;EPP=307.016;EPPR=70.3259;GTI=0;LEN=1;MEANALT=1;MQM=45.0429;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=5393;QR=1180;RO=31;RPL=0;RPP=307.016;RPPR=70.3259;RPR=140;RUN=1;SAF=140;SAP=307.016;SAR=0;SRF=31;SRP=70.3259;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:118:23,95:23:882:95:3679:-271.633,0,-44.1766 0/1:15:2,13:2:78:13:489:-37.212,0,-2.88802 0/1:38:6,32:6:220:32:1225:-95.6371,0,-8.71353 dDocent_Contig_7413 16 . G A 187.132 . AB=0.117647;ABP=197.293;AC=1;AF=0.166667;AN=6;AO=23;CIGAR=1X;DP=243;DPB=243;DPRA=5.575;EPP=52.9542;EPPR=480.734;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=1.38778e-17;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=937;QR=8814;RO=220;RPL=0;RPP=52.9542;RPPR=480.734;RPR=23;RUN=1;SAF=23;SAP=52.9542;SAR=0;SRF=220;SRP=480.734;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:153:135,18:135:5402:18:733:-20.2361,0,-439.961 0/0:20:20,0:20:800:0:0:0,-6.0206,-72.3163 0/0:70:65,5:65:2612:5:204:0,-2.32807,-216.464 dDocent_Contig_7414 9 . A G 92.4142 . AB=0.166667;ABP=43.5445;AC=2;AF=0.333333;AN=6;AO=7;CIGAR=1X;DP=62;DPB=62;DPRA=1.05;EPP=18.2106;EPPR=122.441;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=0.981818;PAO=0;PQA=0;PQR=0;PRO=0;QA=273;QR=2098;RO=55;RPL=0;RPP=18.2106;RPPR=122.441;RPR=7;RUN=1;SAF=7;SAP=18.2106;SAR=0;SRF=55;SRP=122.441;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:20:20,0:20:748:0:0:0,-6.0206,-67.6414 0/1:23:18,5:18:690:5:195:-11.0005,0,-55.5097 0/1:19:17,2:17:660:2:78:-1.6839,0,-54.0177 dDocent_Contig_7415 42 . C T 138.726 . AB=0.625;ABP=4.09604;AC=1;AF=0.166667;AN=6;AO=8;CIGAR=1X;DP=104;DPB=104;DPRA=0.412281;EPP=20.3821;EPPR=211.472;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=320;QR=3812;RO=96;RPL=0;RPP=20.3821;RPPR=211.472;RPR=8;RUN=1;SAF=8;SAP=20.3821;SAR=0;SRF=96;SRP=211.472;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:57:57,0:57:2275:0:0:0,-17.1587,-204.92 0/1:8:3,5:3:119:5:197:-15.6958,0,-8.68677 0/0:39:36,3:36:1418:3:123:0,-0.275381,-116.406 dDocent_Contig_7417 95 . A G 608.138 . AB=0.531915;ABP=3.42611;AC=3;AF=0.5;AN=6;AO=25;CIGAR=1X;DP=47;DPB=47;DPRA=0;EPP=57.2971;EPPR=50.7827;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=883;QR=765;RO=22;RPL=25;RPP=57.2971;RPPR=50.7827;RPR=0;RUN=1;SAF=25;SAP=57.2971;SAR=0;SRF=22;SRP=50.7827;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:24:8,16:8:281:16:570:-44.4083,0,-18.4056 0/1:7:4,3:4:141:3:103:-7.50239,0,-10.9298 0/1:16:10,6:10:343:6:210:-14.426,0,-26.3827 dDocent_Contig_7418 51 . G A 161.812 . AB=0.461538;ABP=3.17734;AC=1;AF=0.25;AN=4;AO=6;CIGAR=1X;DP=22;DPB=22;DPRA=1.44444;EPP=16.0391;EPPR=37.7539;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=2;NUMALT=1;ODDS=0;PAIRED=0;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=238;QR=638;RO=16;RPL=6;RPP=16.0391;RPPR=37.7539;RPR=0;RUN=1;SAF=6;SAP=16.0391;SAR=0;SRF=16;SRP=37.7539;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:13:7,6:7:282:6:238:-17.8802,0,-21.8392 ./.:.:.:.:.:.:.:. 0/0:9:9,0:9:356:0:0:0,-2.70927,-32.3976 dDocent_Contig_7419 24 . A T 99.9203 . AB=0.105263;ABP=183.014;AC=1;AF=0.166667;AN=6;AO=16;CIGAR=1X;DP=193;DPB=193;DPRA=5.17647;EPP=37.7539;EPPR=387.361;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=651;QR=7017;RO=177;RPL=0;RPP=37.7539;RPPR=387.361;RPR=16;RUN=1;SAF=16;SAP=37.7539;SAR=0;SRF=177;SRP=387.361;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:133:119,14:119:4715:14:569:-11.5149,0,-384.207 0/0:17:17,0:17:663:0:0:0,-5.11751,-59.99 0/0:43:41,2:41:1639:2:82:0,-5.16461,-139.959 dDocent_Contig_7420 53 . T G 78.5355 . AB=0.153846;ABP=43.6001;AC=2;AF=0.333333;AN=6;AO=6;CIGAR=1X;DP=64;DPB=64;DPRA=0.78;EPP=16.0391;EPPR=128.956;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=236;QR=2306;RO=58;RPL=6;RPP=16.0391;RPPR=128.956;RPR=0;RUN=1;SAF=6;SAP=16.0391;SAR=0;SRF=58;SRP=128.956;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:18:14,4:14:559:4:160:-9.36526,0,-45.2336 0/0:25:25,0:25:982:0:0:0,-7.52575,-88.6838 0/1:21:19,2:19:765:2:76:-0.892627,0,-62.8498 dDocent_Contig_7421 33 . A G 1658.84 . AB=0.582418;ABP=8.37933;AC=4;AF=0.666667;AN=6;AO=55;CIGAR=1X;DP=93;DPB=93;DPRA=0;EPP=122.441;EPPR=85.5263;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=2176;QR=1514;RO=38;RPL=0;RPP=122.441;RPPR=85.5263;RPR=55;RUN=1;SAF=55;SAP=122.441;SAR=0;SRF=38;SRP=85.5263;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:49:24,25:24:960:25:1006:-76.0833,0,-71.9505 1/1:2:0,2:0:0:2:78:-7.4033,-0.60206,0 0/1:42:14,28:14:554:28:1092:-85.9199,0,-37.5554 dDocent_Contig_7422 7 . T G 67.6291 . AB=0.206897;ABP=24.6501;AC=1;AF=0.166667;AN=6;AO=7;CIGAR=1X;DP=139;DPB=139;DPRA=0.402597;EPP=18.2106;EPPR=289.645;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=58.7121;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=0.969697;PAO=0;PQA=0;PQR=0;PRO=0;QA=226;QR=5037;RO=132;RPL=0;RPP=18.2106;RPPR=289.645;RPR=7;RUN=1;SAF=7;SAP=18.2106;SAR=0;SRF=132;SRP=289.645;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:77:77,0:77:2926:0:0:0,-23.1793,-263.514 0/1:29:23,6:23:879:6:189:-8.58682,0,-70.7004 0/0:33:32,1:32:1232:1:37:0,-6.23616,-99.6122 dDocent_Contig_7423 48 . A G 515.441 . AB=0.404255;ABP=6.75262;AC=2;AF=0.333333;AN=6;AO=19;CIGAR=1X;DP=65;DPB=65;DPRA=1.30556;EPP=44.2683;EPPR=102.898;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=761;QR=1821;RO=46;RPL=0;RPP=44.2683;RPPR=102.898;RPR=19;RUN=1;SAF=19;SAP=44.2683;SAR=0;SRF=46;SRP=102.898;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:38:23,15:23:907:15:599:-42.8093,0,-70.4955 0/1:9:5,4:5:196:4:162:-12.2577,0,-15.3038 0/0:18:18,0:18:718:0:0:0,-5.41854,-64.946 dDocent_Contig_7424 93 . C T 102.248 . AB=0.148936;ABP=103.637;AC=3;AF=0.5;AN=6;AO=14;CIGAR=1X;DP=94;DPB=94;DPRA=0;EPP=33.4109;EPPR=176.728;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=478;QR=2813;RO=80;RPL=14;RPP=33.4109;RPPR=176.728;RPR=0;RUN=1;SAF=14;SAP=33.4109;SAR=0;SRF=80;SRP=176.728;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:45:38,7:38:1335:7:228:-7.29115,0,-106.903 0/1:6:4,2:4:142:2:71:-4.93588,0,-11.323 0/1:43:38,5:38:1336:5:179:-3.5161,0,-107.596 dDocent_Contig_7426 177 . G T 544.419 . AB=0.454545;ABP=3.79993;AC=3;AF=0.5;AN=6;AO=20;CIGAR=2X;DP=44;DPB=44;DPRA=0;EPP=46.4397;EPPR=55.1256;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=801;QR=950;RO=24;RPL=20;RPP=46.4397;RPPR=55.1256;RPR=0;RUN=1;SAF=0;SAP=46.4397;SAR=20;SRF=0;SRP=55.1256;SRR=24;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|1:14:7,7:7:282:7:281:-21.4478,0,-21.5382 0|1:14:10,4:10:388:4:161:-10.6605,0,-31.0577 0|1:16:7,9:7:280:9:359:-27.8565,0,-20.7547 dDocent_Contig_7429 61 . T C 2230.7 . AB=0.727273;ABP=42.4916;AC=4;AF=0.666667;AN=6;AO=71;CIGAR=1X;DP=95;DPB=95;DPRA=0;EPP=157.185;EPPR=55.1256;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=2802;QR=911;RO=24;RPL=71;RPP=157.185;RPPR=55.1256;RPR=0;RUN=1;SAF=71;SAP=157.185;SAR=0;SRF=24;SRP=55.1256;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:62:17,45:17:630:45:1785:-142.2,0,-38.3512 1/1:7:0,7:0:0:7:282:-25.7526,-2.10721,0 0/1:26:7,19:7:281:19:735:-58.6404,0,-17.8352 dDocent_Contig_7431 30 . C G 71.4056 . AB=0.375;ABP=4.09604;AC=1;AF=0.166667;AN=6;AO=4;CIGAR=1X;DP=34;DPB=34;DPRA=1.2;EPP=11.6962;EPPR=68.1545;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=162;QR=1197;RO=30;RPL=0;RPP=11.6962;RPPR=68.1545;RPR=4;RUN=1;SAF=4;SAP=11.6962;SAR=0;SRF=30;SRP=68.1545;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:10:10,0:10:406:0:0:0,-3.0103,-36.9004 0/0:16:15,1:15:589:1:40:0,-0.820801,-49.3464 0/1:8:5,3:5:202:3:122:-8.96425,0,-16.1533 dDocent_Contig_7432 54 . G A 68.425 . AB=0.114583;ABP=126.875;AC=3;AF=0.5;AN=6;AO=11;CIGAR=1X;DP=96;DPB=96;DPRA=0;EPP=26.8965;EPPR=187.585;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=438;QR=3314;RO=85;RPL=11;RPP=26.8965;RPPR=187.585;RPR=0;RUN=1;SAF=11;SAP=26.8965;SAR=0;SRF=85;SRP=187.585;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:56:51,5:51:2022:5:199:-1.4303,0,-165.31 0/1:9:6,3:6:226:3:121:-8.57093,0,-17.9896 0/1:31:28,3:28:1066:3:118:-1.67058,0,-86.8933 dDocent_Contig_7433 55 . T C 1604.18 . AB=0.419118;ABP=10.7382;AC=3;AF=0.5;AN=6;AO=57;CIGAR=1X;DP=136;DPB=136;DPRA=0;EPP=126.784;EPPR=174.557;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=2288;QR=3083;RO=79;RPL=57;RPP=126.784;RPPR=174.557;RPR=0;RUN=1;SAF=57;SAP=126.784;SAR=0;SRF=79;SRP=174.557;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:78:57,21:57:2221:21:851:-53.4205,0,-176.582 0/1:9:4,5:4:158:5:199:-15.5797,0,-11.891 0/1:49:18,31:18:704:31:1238:-96.941,0,-48.9312 dDocent_Contig_7435 94 . A G 91.4488 . AB=0;ABP=0;AC=2;AF=1;AN=2;AO=3;CIGAR=1X3M1X;DP=3;DPB=3;DPRA=0;EPP=9.52472;EPPR=0;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=0;NS=1;NUMALT=1;ODDS=6.68461;PAIRED=1;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=98;QR=0;RO=0;RPL=3;RPP=9.52472;RPPR=0;RPR=0;RUN=1;SAF=3;SAP=9.52472;SAR=0;SRF=0;SRP=0;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 1|1:3:0,3:0:0:3:98:-9.14433,-0.90309,0 .:.:.:.:.:.:.:. .:.:.:.:.:.:.:. dDocent_Contig_7436 15 . T C 338.326 . AB=0.165414;ABP=132.335;AC=3;AF=0.5;AN=6;AO=22;CIGAR=1X;DP=133;DPB=133;DPRA=0;EPP=50.7827;EPPR=244.044;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=870;QR=4420;RO=111;RPL=0;RPP=50.7827;RPPR=244.044;RPR=22;RUN=1;SAF=22;SAP=50.7827;SAR=0;SRF=111;SRP=244.044;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:96:81,15:81:3244:15:595:-24.9845,0,-263.102 0/1:8:5,3:5:191:3:120:-8.77907,0,-15.1465 0/1:29:25,4:25:985:4:155:-5.59192,0,-80.214 dDocent_Contig_7437 20 . A G 1463.09 . AB=0.631579;ABP=14.4391;AC=3;AF=0.5;AN=6;AO=48;CIGAR=1X9M;DP=76;DPB=75.8;DPRA=0;EPP=107.241;EPPR=59.4686;GTI=0;LEN=1;MEANALT=1.33333;MQM=60;MQMR=60;NS=3;NUMALT=2;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=1927;QR=1032;RO=26;RPL=0;RPP=107.241;RPPR=59.4686;RPR=48;RUN=1;SAF=48;SAP=107.241;SAR=0;SRF=26;SRP=59.4686;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|1:39:17,2,20:17:671:2,20:62,813:-62.0279,-62.1774,-116.779,0,-50.317,-49.2642 0|1:15:3,0,12:3:120:0,12:0,476:-38.6726,-39.5757,-49.4616,0,-10.2848,-6.67245 0|1:22:6,0,16:6:241:0,16:0,638:-51.1309,-52.9371,-72.7972,0,-20.2605,-15.444 dDocent_Contig_7439 23 . G A 736.255 . AB=0.323077;ABP=20.6827;AC=1;AF=0.166667;AN=6;AO=21;CIGAR=1X3M1X1M;DP=71;DPB=71;DPRA=0;EPP=48.6112;EPPR=59.4686;GTI=0;LEN=1;MEANALT=3.5;MQM=60;MQMR=60;NS=3;NUMALT=4;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=813;QR=1014;RO=26;RPL=0;RPP=48.6112;RPPR=59.4686;RPR=21;RUN=1;SAF=21;SAP=48.6112;SAR=0;SRF=26;SRP=59.4686;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 1|0:39:5,17,10,4,3:5:201:17,10,4,3:653,401,159,123:-68.5546,-16.4743,-27.9212,-37.017,0,-50.5732,-56.9684,-19.9489,-40.4918,-72.33,-59.9059,-22.8852,-43.4292,-63.3804,-75.5686 0|0:6:4,0,1,0,1:4:154:0,1,0,1:0,41,0,41:-2.17996,-3.38408,-16.0115,0,-12.6242,-12.3231,-3.38408,-16.0115,-12.6242,-16.0115,0,-12.6242,-9.23512,-12.6242,-12.3231 0|0:26:17,4,0,1,4:17:659:4,0,1,4:160,0,40,161:-8.15271,-0.0907685,-53.0119,-13.2702,-54.216,-67.3978,-9.97527,-50.9205,-64.1024,-63.8013,0,-40.9444,-54.1268,-50.8313,-52.9227 dDocent_Contig_7442 18 . G T 133.406 . AB=0.333333;ABP=7.35324;AC=2;AF=0.333333;AN=6;AO=6;CIGAR=1X;DP=24;DPB=24;DPRA=1.5;EPP=16.0391;EPPR=42.0968;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=239;QR=733;RO=18;RPL=0;RPP=16.0391;RPPR=42.0968;RPR=6;RUN=1;SAF=6;SAP=16.0391;SAR=0;SRF=18;SRP=42.0968;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:16:11,5:11:448:5:201:-13.6546,0,-35.8595 0/1:2:1,1:1:41:1:38:-3.19521,0,-3.49251 0/0:6:6,0:6:244:0:0:0,-1.80618,-22.3388 dDocent_Contig_7443 58 . G A 197.997 . AB=0.272727;ABP=17.8158;AC=2;AF=0.333333;AN=6;AO=9;CIGAR=1X;DP=34;DPB=34;DPRA=16.5;EPP=22.5536;EPPR=57.2971;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=361;QR=996;RO=25;RPL=9;RPP=22.5536;RPPR=57.2971;RPR=0;RUN=1;SAF=9;SAP=22.5536;SAR=0;SRF=25;SRP=57.2971;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:19:15,4:15:596:4:163:-9.33886,0,-48.2598 0/0:1:1,0:1:41:0:0:0,-0.30103,-4.09457 0/1:14:9,5:9:359:5:198:-13.983,0,-28.4577 dDocent_Contig_7444 9 . A T 151.145 . AB=0;ABP=0;AC=2;AF=1;AN=2;AO=5;CIGAR=1X;DP=5;DPB=5;DPRA=0;EPP=13.8677;EPPR=0;GTI=0;LEN=1;MEANALT=1;MQM=37.8;MQMR=0;NS=1;NUMALT=1;ODDS=8.07091;PAIRED=0.2;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=195;QR=0;RO=0;RPL=0;RPP=13.8677;RPPR=0;RPR=5;RUN=1;SAF=5;SAP=13.8677;SAR=0;SRF=0;SRP=0;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 1/1:5:0,5:0:0:5:195:-15.1143,-1.50515,0 ./.:.:.:.:.:.:.:. ./.:.:.:.:.:.:.:. dDocent_Contig_7446 28 . A T 348.294 . AB=0.538462;ABP=3.17734;AC=3;AF=0.5;AN=6;AO=11;CIGAR=1M3I1M1X;DP=22;DPB=33;DPRA=1.7;EPP=26.8965;EPPR=26.8965;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=439;QR=438;RO=11;RPL=0;RPP=26.8965;RPPR=26.8965;RPR=11;RUN=1;SAF=11;SAP=26.8965;SAR=0;SRF=11;SRP=26.8965;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|1:13:6,7:6:235:7:279:-21.5681,0,-17.6071 1|1:4:0,4:0:0:4:160:-14.784,-1.20412,0 0|0:5:5,0:5:203:0:0:0,-1.50515,-18.6531 dDocent_Contig_7447 87 . T G 81.8216 . AB=0.185185;ABP=26.2531;AC=1;AF=0.166667;AN=6;AO=5;CIGAR=1X;DP=49;DPB=49;DPRA=2.45455;EPP=13.8677;EPPR=98.5551;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=0;PAIREDR=0.340909;PAO=0;PQA=0;PQR=0;PRO=0;QA=194;QR=1587;RO=44;RPL=5;RPP=13.8677;RPPR=98.5551;RPR=0;RUN=1;SAF=5;SAP=13.8677;SAR=0;SRF=44;SRP=98.5551;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:27:22,5:22:805:5:194:-9.70503,0,-64.6478 0/0:10:10,0:10:350:0:0:0,-3.0103,-31.8368 0/0:12:12,0:12:432:0:0:0,-3.61236,-39.2202 dDocent_Contig_7449 54 . G T 855.289 . AB=0.54717;ABP=4.03458;AC=2;AF=0.333333;AN=6;AO=31;CIGAR=1X;DP=78;DPB=78;DPRA=0;EPP=70.3259;EPPR=105.07;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=1229;QR=1898;RO=47;RPL=31;RPP=70.3259;RPPR=105.07;RPR=0;RUN=1;SAF=31;SAP=70.3259;SAR=0;SRF=47;SRP=105.07;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:50:23,27:23:931:27:1078:-82.2574,0,-69.0412 0/1:3:1,2:1:40:2:81:-6.78264,0,-3.09259 0/0:25:23,2:23:927:2:70:0,-0.881238,-77.0904 dDocent_Contig_7450 22 . G T 81.727 . AB=0.146341;ABP=47.552;AC=1;AF=0.166667;AN=6;AO=6;CIGAR=1X;DP=133;DPB=133;DPRA=0.891304;EPP=16.0391;EPPR=278.787;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=244;QR=5136;RO=127;RPL=0;RPP=16.0391;RPPR=278.787;RPR=6;RUN=1;SAF=6;SAP=16.0391;SAR=0;SRF=127;SRP=278.787;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:85:85,0:85:3433:0:0:0,-25.5875,-309.001 0/0:7:7,0:7:286:0:0:0,-2.10721,-26.1148 0/1:41:35,6:35:1417:6:244:-9.99659,0,-115.436 dDocent_Contig_7451 22 . T A 438.969 . AB=0.271429;ABP=34.7758;AC=2;AF=0.333333;AN=6;AO=19;CIGAR=1X;DP=80;DPB=80;DPRA=3.5;EPP=44.2683;EPPR=135.47;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=753;QR=2434;RO=61;RPL=0;RPP=44.2683;RPPR=135.47;RPR=19;RUN=1;SAF=19;SAP=44.2683;SAR=0;SRF=61;SRP=135.47;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:60:47,13:47:1865:13:508:-28.0006,0,-149.995 0/0:10:10,0:10:410:0:0:0,-3.0103,-37.2606 0/1:10:4,6:4:159:6:245:-19.4192,0,-11.6811 dDocent_Contig_7452 10 . T A 234.246 . AB=0.17284;ABP=78.3148;AC=2;AF=0.333333;AN=6;AO=14;CIGAR=1X;DP=103;DPB=103;DPRA=1.84091;EPP=33.4109;EPPR=196.271;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=562;QR=3565;RO=89;RPL=0;RPP=33.4109;RPPR=196.271;RPR=14;RUN=1;SAF=14;SAP=33.4109;SAR=0;SRF=89;SRP=196.271;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:55:44,11:44:1766:11:440:-23.3977,0,-142.598 0/0:22:22,0:22:870:0:0:0,-6.62266,-78.6087 0/1:26:23,3:23:929:3:122:-3.54571,0,-76.0869 dDocent_Contig_7453 118 . G A 44.7442 . AB=0.347826;ABP=7.63648;AC=1;AF=0.25;AN=4;AO=8;CIGAR=1X;DP=34;DPB=34;DPRA=2.09091;EPP=20.3821;EPPR=59.4686;GTI=0;LEN=1;MEANALT=1;MQM=21;MQMR=47.5385;NS=2;NUMALT=1;ODDS=0;PAIRED=0;PAIREDR=0.769231;PAO=0;PQA=0;PQR=0;PRO=0;QA=278;QR=918;RO=26;RPL=0;RPP=20.3821;RPPR=59.4686;RPR=8;RUN=1;SAF=0;SAP=20.3821;SAR=8;SRF=0;SRP=59.4686;SRR=26;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:23:15,8:15:527:8:278:-6.17337,0,-23.8013 ./.:.:.:.:.:.:.:. 0/0:11:11,0:11:391:0:0:0,-3.31133,-35.5297 dDocent_Contig_7455 28 . C G 326.956 . AB=0.107843;ABP=139.26;AC=2;AF=0.333333;AN=6;AO=11;CIGAR=5M1X1M;DP=102;DPB=100.143;DPRA=0;EPP=26.8965;EPPR=172.385;GTI=0;LEN=1;MEANALT=1.66667;MQM=60;MQMR=59.8974;NS=3;NUMALT=2;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=439;QR=3102;RO=78;RPL=0;RPP=26.8965;RPPR=172.385;RPR=11;RUN=1;SAF=11;SAP=26.8965;SAR=0;SRF=78;SRP=172.385;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|0:71:57,11,3:57:2263:11,3:425,119:-17.73,0,-182.967,-25.0909,-176.483,-210.475 0|1:15:11,0,4:11:438:0,4:0,161:-10.36,-13.6714,-49.7348,0,-36.4643,-35.2602 0|1:16:10,2,4:10:401:2,4:65,159:-10.1284,-7.91749,-40.3567,0,-27.8692,-31.8978 dDocent_Contig_7456 19 . C T 142.003 . AB=0.222222;ABP=27.1378;AC=2;AF=0.333333;AN=6;AO=8;CIGAR=1X;DP=47;DPB=47;DPRA=1.63636;EPP=7.35324;EPPR=87.6977;GTI=0;LEN=1;MEANALT=1;MQM=53.5;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=0.5;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=311;QR=1552;RO=39;RPL=0;RPP=20.3821;RPPR=87.6977;RPR=8;RUN=1;SAF=6;SAP=7.35324;SAR=2;SRF=39;SRP=87.6977;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:27:21,6:21:832:6:229:-12.6527,0,-67.0582 0/0:11:11,0:11:433:0:0:0,-3.31133,-39.3214 0/1:9:7,2:7:287:2:82:-5.07041,0,-23.496 dDocent_Contig_7457 10 . T C 342.139 . AB=0.0666667;ABP=51.9408;AC=0;AF=0;AN=6;AO=6;CIGAR=2X;DP=115;DPB=115;DPRA=0;EPP=16.0391;EPPR=200.614;GTI=0;LEN=1;MEANALT=2;MQM=60;MQMR=60;NS=3;NUMALT=2;ODDS=0;PAIRED=1;PAIREDR=0.989011;PAO=0;PQA=0;PQR=0;PRO=0;QA=243;QR=3670;RO=91;RPL=0;RPP=16.0391;RPPR=200.614;RPR=6;RUN=1;SAF=6;SAP=16.0391;SAR=0;SRF=91;SRP=200.614;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|0:82:73,4,5:73:2939:4,5:162,202:0,-8.61642,-249.634,-5.32291,-234.186,-246.039 0|0:3:2,0,1:2:81:0,1:0,41:-3.19148,-3.79354,-10.4694,0,-7.08367,-6.78264 0|0:30:16,2,12:16:650:2,12:81,478:-34.5361,-32.6724,-85.6862,0,-46.9334,-50 dDocent_Contig_7458 10 . T C 141.867 . AB=0.177778;ABP=43.5927;AC=1;AF=0.166667;AN=6;AO=8;CIGAR=1X;DP=58;DPB=58;DPRA=6.92308;EPP=20.3821;EPPR=111.584;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=0.72;PAO=0;PQA=0;PQR=0;PRO=0;QA=321;QR=2014;RO=50;RPL=0;RPP=20.3821;RPPR=111.584;RPR=8;RUN=1;SAF=8;SAP=20.3821;SAR=0;SRF=50;SRP=111.584;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:45:37,8:37:1492:8:321:-15.7092,0,-120.976 0/0:2:2,0:2:78:0:0:0,-0.60206,-7.4033 0/0:11:11,0:11:444:0:0:0,-3.31133,-40.3158 dDocent_Contig_7459 32 . C A 771.878 . AB=0.627907;ABP=9.12072;AC=3;AF=0.5;AN=6;AO=27;CIGAR=1X;DP=43;DPB=43;DPRA=0;EPP=61.6401;EPPR=37.7539;GTI=0;LEN=1;MEANALT=1;MQM=56.6667;MQMR=60;NS=3;NUMALT=1;ODDS=3.46945e-18;PAIRED=0.888889;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=1082;QR=612;RO=16;RPL=0;RPP=61.6401;RPPR=37.7539;RPR=27;RUN=1;SAF=27;SAP=61.6401;SAR=0;SRF=16;SRP=37.7539;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:24:7,17:7:276:17:678:-52.3234,0,-17.9846 0/1:3:1,2:1:40:2:81:-6.78264,0,-3.09259 0/1:16:8,8:8:296:8:323:-23.5931,0,-22.1713 dDocent_Contig_7460 57 . C T 37.7333 . AB=0.135135;ABP=45.7942;AC=2;AF=0.333333;AN=6;AO=5;CIGAR=1X;DP=43;DPB=43;DPRA=3.08333;EPP=13.8677;EPPR=85.5263;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=52.8684;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=0.868421;PAO=0;PQA=0;PQR=0;PRO=0;QA=196;QR=1478;RO=38;RPL=5;RPP=13.8677;RPPR=85.5263;RPR=0;RUN=1;SAF=5;SAP=13.8677;SAR=0;SRF=38;SRP=85.5263;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:11:9,2:9:365:2:82:-4.46835,0,-29.9037 0/0:6:6,0:6:227:0:0:0,-1.80618,-17.5845 0/1:26:23,3:23:886:3:114:-2.8052,0,-60.6669 dDocent_Contig_7461 47 . A C 241.068 . AB=0.434783;ABP=3.86001;AC=2;AF=0.333333;AN=6;AO=10;CIGAR=1X;DP=39;DPB=39;DPRA=0.71875;EPP=24.725;EPPR=65.983;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=376;QR=1151;RO=29;RPL=0;RPP=24.725;RPPR=65.983;RPR=10;RUN=1;SAF=10;SAP=24.725;SAR=0;SRF=29;SRP=65.983;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:16:16,0:16:635:0:0:0,-4.81648,-57.4866 0/1:15:10,5:10:394:5:202:-14.046,0,-31.303 0/1:8:3,5:3:122:5:174:-13.5836,0,-8.96425 dDocent_Contig_7462 33 . A C 731.736 . AB=0.469388;ABP=3.40914;AC=4;AF=0.666667;AN=6;AO=25;CIGAR=1X;DP=51;DPB=51;DPRA=0;EPP=57.2971;EPPR=59.4686;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=0.92;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=1004;QR=1040;RO=26;RPL=0;RPP=57.2971;RPPR=59.4686;RPR=25;RUN=1;SAF=25;SAP=57.2971;SAR=0;SRF=26;SRP=59.4686;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:27:9,18:9:358:18:726:-57.5363,0,-24.4543 1/1:2:0,2:0:0:2:78:-7.40278,-0.60206,0 0/1:22:17,5:17:682:5:200:-11.757,0,-55.0861 dDocent_Contig_7464 22 . A G 50.6193 . AB=0.666667;ABP=3.73412;AC=1;AF=0.166667;AN=6;AO=2;CIGAR=1X;DP=16;DPB=16;DPRA=0.461538;EPP=7.35324;EPPR=33.4109;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=82;QR=567;RO=14;RPL=0;RPP=7.35324;RPPR=33.4109;RPR=2;RUN=1;SAF=2;SAP=7.35324;SAR=0;SRF=14;SRP=33.4109;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:7:7,0:7:284:0:0:0,-2.10721,-25.9334 0/1:3:1,2:1:41:2:82:-6.87659,0,-3.19148 0/0:6:6,0:6:242:0:0:0,-1.80618,-22.1573 dDocent_Contig_7466 7 . T A 35.1883 . AB=0.129032;ABP=40.0654;AC=1;AF=0.166667;AN=6;AO=4;CIGAR=1X;DP=49;DPB=49;DPRA=3.44444;EPP=11.6962;EPPR=81.9729;GTI=0;LEN=1;MEANALT=2;MQM=60;MQMR=57.8636;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=0.954545;PAO=0;PQA=0;PQR=0;PRO=0;QA=156;QR=1682;RO=44;RPL=0;RPP=11.6962;RPPR=98.5551;RPR=4;RUN=1;SAF=4;SAP=11.6962;SAR=0;SRF=42;SRP=81.9729;SRR=2;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:31:26,4:26:991:4:156:-5.04157,0,-76.1574 0/0:8:8,0:8:310:0:0:0,-2.40824,-28.2636 0/0:10:10,0:10:381:0:0:0,-3.0103,-34.645 dDocent_Contig_7467 21 . A C 57.5883 . AB=0.166667;ABP=26.1727;AC=1;AF=0.166667;AN=6;AO=4;CIGAR=1X;DP=41;DPB=41;DPRA=2.82353;EPP=11.6962;EPPR=83.3548;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=1.73472e-18;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=157;QR=1463;RO=37;RPL=0;RPP=11.6962;RPPR=83.3548;RPR=4;RUN=1;SAF=4;SAP=11.6962;SAR=0;SRF=37;SRP=83.3548;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:24:20,4:20:816:4:157:-7.2817,0,-66.5288 0/0:7:7,0:7:265:0:0:0,-2.10721,-24.21 0/0:10:10,0:10:382:0:0:0,-3.0103,-34.7268 dDocent_Contig_7470 9 . A C 717.131 . AB=0.530612;ABP=3.40914;AC=3;AF=0.5;AN=6;AO=26;CIGAR=1X;DP=49;DPB=49;DPRA=0;EPP=59.4686;EPPR=52.9542;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=59.7826;NS=3;NUMALT=1;ODDS=3.46945e-18;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=1010;QR=895;RO=23;RPL=0;RPP=59.4686;RPPR=52.9542;RPR=26;RUN=1;SAF=26;SAP=59.4686;SAR=0;SRF=23;SRP=52.9542;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:20:8,12:8:310:12:468:-36.452,0,-22.243 0/1:12:3,9:3:117:9:347:-27.9773,0,-7.29117 0/1:17:12,5:12:468:5:195:-12.8067,0,-37.355 dDocent_Contig_7471 59 . G A 31.5306 . AB=0.2;ABP=10.8276;AC=1;AF=0.166667;AN=6;AO=2;CIGAR=1X;DP=19;DPB=19;DPRA=2.22222;EPP=7.35324;EPPR=39.9253;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=81;QR=658;RO=17;RPL=2;RPP=7.35324;RPPR=39.9253;RPR=0;RUN=1;SAF=2;SAP=7.35324;SAR=0;SRF=17;SRP=39.9253;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:10:8,2:8:317:2:81:-4.67543,0,-25.8832 0/0:6:6,0:6:221:0:0:0,-1.80618,-20.2387 0/0:3:3,0:3:120:0:0:0,-0.90309,-11.1879 dDocent_Contig_7472 47 . C A 139.002 . AB=0.4;ABP=4.31318;AC=1;AF=0.166667;AN=6;AO=9;CIGAR=1X;DP=83;DPB=83;DPRA=1.68421;EPP=22.5536;EPPR=163.699;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=59.8784;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=0.932432;PAO=0;PQA=0;PQR=0;PRO=0;QA=341;QR=2939;RO=74;RPL=0;RPP=22.5536;RPPR=163.699;RPR=9;RUN=1;SAF=9;SAP=22.5536;SAR=0;SRF=74;SRP=163.699;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:49:46,3:46:1821:3:120:0,-3.56316,-152.908 0/1:15:9,6:9:362:6:221:-15.7241,0,-28.4289 0/0:19:19,0:19:756:0:0:0,-5.71957,-68.3626 dDocent_Contig_7473 22 . A G 127.159 . AB=0.4;ABP=4.31318;AC=2;AF=0.333333;AN=6;AO=6;CIGAR=1X;DP=23;DPB=23;DPRA=0.9375;EPP=16.0391;EPPR=39.9253;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=215;QR=669;RO=17;RPL=0;RPP=16.0391;RPPR=39.9253;RPR=6;RUN=1;SAF=6;SAP=16.0391;SAR=0;SRF=17;SRP=39.9253;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:8:7,1:7:287:1:34:-0.990671,0,-23.797 0/1:7:2,5:2:78:5:181:-14.5258,0,-5.29557 0/0:8:8,0:8:304:0:0:0,-2.40824,-27.7117 dDocent_Contig_7476 7 . T A 153.274 . AB=0.209302;ABP=34.5724;AC=2;AF=0.333333;AN=6;AO=10;CIGAR=1X;DP=62;DPB=62;DPRA=0;EPP=24.725;EPPR=115.927;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=384;QR=1985;RO=52;RPL=0;RPP=24.725;RPPR=115.927;RPR=10;RUN=1;SAF=10;SAP=24.725;SAR=0;SRF=52;SRP=115.927;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:25:19,6:19:729:6:228:-13.3584,0,-58.4143 0/1:18:15,3:15:564:3:117:-5.49184,0,-45.6774 0/0:19:18,1:18:692:1:39:0,-1.82301,-58.7173 dDocent_Contig_7479 193 . T G 175.766 . AB=0.181818;ABP=12.6832;AC=1;AF=0.25;AN=4;AO=2;CIGAR=1X1M1X;DP=27;DPB=27;DPRA=0;EPP=7.35324;EPPR=42.0968;GTI=0;LEN=1;MEANALT=2;MQM=60;MQMR=60;NS=2;NUMALT=2;ODDS=0;PAIRED=0;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=77;QR=711;RO=18;RPL=2;RPP=7.35324;RPPR=42.0968;RPR=0;RUN=1;SAF=0;SAP=7.35324;SAR=2;SRF=0;SRP=42.0968;SRR=18;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|0:16:10,0,6:10:398:0,6:0,241:-17.2498,-20.2601,-53.0297,0,-33.1694,-31.3632 .:.:.:.:.:.:.:. 0|1:11:8,2,1:8:313:2,1:77,22:-4.02365,0,-25.2843,-4.80787,-24.2265,-30.2463 dDocent_Contig_7480 14 . C T 224.524 . AB=0.255319;ABP=27.4509;AC=2;AF=0.333333;AN=6;AO=12;CIGAR=1X;DP=48;DPB=48;DPRA=23.5;EPP=29.068;EPPR=81.1833;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=438;QR=1423;RO=36;RPL=0;RPP=29.068;RPPR=81.1833;RPR=12;RUN=1;SAF=12;SAP=29.068;SAR=0;SRF=36;SRP=81.1833;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:29:25,4:25:996:4:145:-4.67441,0,-81.2077 0/0:1:1,0:1:40:0:0:0,-0.30103,-3.99568 0/1:18:10,8:10:387:8:293:-21.2998,0,-29.7615 dDocent_Contig_7481 11 . G A 681.563 . AB=0.129032;ABP=40.0654;AC=1;AF=0.166667;AN=6;AO=4;CIGAR=2M1X4M;DP=161;DPB=161;DPRA=0;EPP=11.6962;EPPR=187.585;GTI=0;LEN=1;MEANALT=4;MQM=60;MQMR=54.2588;NS=3;NUMALT=5;ODDS=0;PAIRED=1;PAIREDR=0.694118;PAO=0;PQA=0;PQR=0;PRO=0;QA=163;QR=3296;RO=85;RPL=0;RPP=11.6962;RPPR=187.585;RPR=4;RUN=1;SAF=4;SAP=11.6962;SAR=0;SRF=85;SRP=187.585;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|0:75:40,1,5,5,0,21:40:1571:1,5,5,0,21:22,202,194,0,710:-41.4234,-52.0587,-178.897,-47.4497,-173.173,-173.075,-37.5107,-163.255,-158.638,-163.157,-53.4646,-179.198,-174.58,-164.662,-180.605,0,-125.764,-121.152,-111.228,-127.17,-120.849 0|0:55:25,10,5,0,0,12:25:958:10,5,0,0,12:333,189,0,0,417:-24.7985,-7.55068,-74.044,-25.0294,-69.756,-93.0095,-32.3242,-77.0543,-94.5147,-101.816,-32.3242,-77.0543,-94.5147,-101.816,-101.816,0,-44.7537,-62.2184,-69.5168,-69.5168,-65.9045 0|1:31:20,0,0,3,4,3:20:767:0,0,3,4,3:0,0,115,163,92:-7.45726,-13.4779,-76.4295,-13.4779,-76.4295,-76.4295,-4.02803,-66.9896,-66.9896,-66.0865,0,-62.9771,-62.9771,-53.5363,-61.7729,-6.73936,-69.6744,-69.6744,-60.2355,-56.2229,-68.7713 dDocent_Contig_7482 33 . A C 284.943 . AB=0.392857;ABP=5.80219;AC=2;AF=0.333333;AN=6;AO=11;CIGAR=1X;DP=54;DPB=54;DPRA=0.538462;EPP=26.8965;EPPR=96.3836;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=441;QR=1725;RO=43;RPL=0;RPP=26.8965;RPPR=96.3836;RPR=11;RUN=1;SAF=11;SAP=26.8965;SAR=0;SRF=43;SRP=96.3836;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:26:26,0:26:1041:0:0:0,-7.82678,-93.9812 0/1:8:4,4:4:162:4:163:-12.6502,0,-12.5587 0/1:20:13,7:13:522:7:278:-19.367,0,-41.3055 dDocent_Contig_7483 33 . C A 177.381 . AB=0.129032;ABP=151.231;AC=1;AF=0.166667;AN=6;AO=18;CIGAR=1X;DP=154;DPB=154;DPRA=14.9;EPP=42.0968;EPPR=298.331;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=701;QR=5371;RO=136;RPL=0;RPP=42.0968;RPPR=298.331;RPR=18;RUN=1;SAF=18;SAP=42.0968;SAR=0;SRF=136;SRP=298.331;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:124:108,16:108:4262:16:625:-19.2602,0,-346.2 0/0:5:5,0:5:202:0:0:0,-1.50515,-18.5619 0/0:25:23,2:23:907:2:76:0,-0.311076,-74.7174 dDocent_Contig_7484 27 . C A 40.5591 . AB=0.333333;ABP=4.45795;AC=1;AF=0.166667;AN=6;AO=3;CIGAR=1X;DP=29;DPB=29;DPRA=1.57143;EPP=9.52472;EPPR=59.4686;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=121;QR=1018;RO=26;RPL=0;RPP=9.52472;RPPR=59.4686;RPR=3;RUN=1;SAF=3;SAP=9.52472;SAR=0;SRF=26;SRP=59.4686;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:16:15,1:15:589:1:40:0,-0.820801,-49.3503 0/0:7:7,0:7:271:0:0:0,-2.10721,-24.7542 0/1:6:4,2:4:158:2:81:-5.87955,0,-12.7936 dDocent_Contig_7485 18 . G T 50.9771 . AB=0.148148;ABP=32.0437;AC=1;AF=0.166667;AN=6;AO=7;CIGAR=1X;DP=81;DPB=81;DPRA=7.6;EPP=18.2106;EPPR=161.528;GTI=0;LEN=1;MEANALT=1.5;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=0.835616;PAO=0;PQA=0;PQR=0;PRO=0;QA=285;QR=2935;RO=73;RPL=0;RPP=18.2106;RPPR=161.528;RPR=7;RUN=1;SAF=7;SAP=18.2106;SAR=0;SRF=73;SRP=161.528;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:49:46,3:46:1849:3:121:0,-3.47048,-155.335 0/0:5:5,0:5:201:0:0:0,-1.50515,-18.4705 0/1:27:22,4:22:885:4:164:-6.92157,0,-71.7322 dDocent_Contig_7486 120 . A C 161.723 . AB=0.296296;ABP=12.7417;AC=3;AF=0.5;AN=6;AO=8;CIGAR=1X;DP=27;DPB=27;DPRA=0;EPP=20.3821;EPPR=44.2683;GTI=0;LEN=1;MEANALT=1;MQM=56.25;MQMR=60;NS=3;NUMALT=1;ODDS=3.46945e-18;PAIRED=0;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=317;QR=662;RO=19;RPL=0;RPP=20.3821;RPPR=44.2683;RPR=8;RUN=1;SAF=0;SAP=20.3821;SAR=8;SRF=0;SRP=44.2683;SRR=19;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:17:12,5:12:418:5:195:-12.7782,0,-32.8364 0/1:3:1,2:1:35:2:82:-6.78907,0,-2.59554 0/1:7:6,1:6:209:1:40:-1.88847,0,-17.0438 dDocent_Contig_7487 77 . A T 49.1688 . AB=0.2;ABP=18.6449;AC=1;AF=0.166667;AN=6;AO=11;CIGAR=1X;DP=42;DPB=42;DPRA=0;EPP=26.8965;EPPR=70.3259;GTI=0;LEN=1;MEANALT=1;MQM=26.2727;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=0.363636;PAIREDR=0.870968;PAO=0;PQA=0;PQR=0;PRO=0;QA=406;QR=1064;RO=31;RPL=11;RPP=26.8965;RPPR=70.3259;RPR=0;RUN=1;SAF=11;SAP=26.8965;SAR=0;SRF=31;SRP=70.3259;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:17:12,5:12:414:5:193:0,-1.89862,-34.3725 0/0:5:3,2:3:101:2:75:0,-0.175774,-8.09422 0/1:20:16,4:16:549:4:138:-6.7398,0,-43.7147 dDocent_Contig_7488 20 . A G 289.482 . AB=0.366667;ABP=7.64277;AC=1;AF=0.166667;AN=6;AO=11;CIGAR=3X;DP=41;DPB=41;DPRA=5.45455;EPP=26.8965;EPPR=68.1545;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=435;QR=1198;RO=30;RPL=0;RPP=26.8965;RPPR=68.1545;RPR=11;RUN=1;SAF=11;SAP=26.8965;SAR=0;SRF=30;SRP=68.1545;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|1:30:19,11:19:756:11:435:-30.4707,0,-59.3314 0|0:9:9,0:9:363:0:0:0,-2.70927,-33.0338 0|0:2:2,0:2:79:0:0:0,-0.60206,-7.49724 dDocent_Contig_7490 18 . G C 1763.5 . AB=0.111765;ABP=448.137;AC=1;AF=0.166667;AN=6;AO=38;CIGAR=1X1M2X2M;DP=340;DPB=339.333;DPRA=0;EPP=85.5263;EPPR=235.358;GTI=0;LEN=1;MEANALT=11;MQM=60;MQMR=57.3271;NS=3;NUMALT=4;ODDS=0;PAIRED=0;PAIREDR=0.411215;PAO=0;PQA=0;PQR=0;PRO=0;QA=1474;QR=4175;RO=107;RPL=0;RPP=85.5263;RPPR=235.358;RPR=38;RUN=1;SAF=38;SAP=85.5263;SAR=0;SRF=107;SRP=235.358;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|0:139:42,19,8,24,24:42:1644:19,8,24,24:717,309,959,926:-66.3491,-20.2411,-144.716,-53.6152,-125.059,-181.403,0,-71.4438,-104.819,-122.972,-3.10495,-74.5476,-107.923,-54.3075,-126.075 0|0:106:28,10,18,23,10:28:1103:10,18,23,10:391,689,898,387:-65.3886,-42.5847,-130.09,-17.2788,-76.5622,-102.376,0,-59.2844,-33.9786,-83.5933,-42.2432,-101.526,-76.2207,-58.9429,-129.749 0|1:95:37,19,12,6,12:37:1428:19,12,6,12:746,476,237,474:-50.1353,0,-110.301,-22.0881,-76.8356,-134.497,-41.7708,-96.5183,-118.607,-155.986,-22.3122,-77.0595,-99.1481,-118.831,-134.721 dDocent_Contig_7491 19 . T C 132.962 . AB=0.555556;ABP=3.25157;AC=1;AF=0.166667;AN=6;AO=5;CIGAR=1X;DP=43;DPB=43;DPRA=0.529412;EPP=13.8677;EPPR=85.5263;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=194;QR=1518;RO=38;RPL=0;RPP=13.8677;RPPR=85.5263;RPR=5;RUN=1;SAF=5;SAP=13.8677;SAR=0;SRF=38;SRP=85.5263;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:24:24,0:24:958:0:0:0,-7.22472,-86.5202 0/1:9:4,5:4:153:5:194:-15.1202,0,-11.4287 0/0:10:10,0:10:407:0:0:0,-3.0103,-36.9906 dDocent_Contig_7492 11 . C G 204.843 . AB=0.470588;ABP=3.13803;AC=2;AF=0.333333;AN=6;AO=8;CIGAR=1X;DP=28;DPB=28;DPRA=0.772727;EPP=20.3821;EPPR=46.4397;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=315;QR=795;RO=20;RPL=0;RPP=20.3821;RPPR=46.4397;RPR=8;RUN=1;SAF=8;SAP=20.3821;SAR=0;SRF=20;SRP=46.4397;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:15:8,7:8:324:7:275:-20.602,0,-25.0139 0/1:2:1,1:1:40:1:40:-3.39362,0,-3.39362 0/0:11:11,0:11:431:0:0:0,-3.31133,-39.1396 dDocent_Contig_7493 107 . N T 62.694 . AB=0;ABP=0;AC=2;AF=1;AN=2;AO=2;CIGAR=1X;DP=2;DPB=2;DPRA=0;EPP=7.35324;EPPR=0;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=0;NS=1;NUMALT=1;ODDS=5.99146;PAIRED=1;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=66;QR=0;RO=0;RPL=0;RPP=7.35324;RPPR=0;RPR=2;RUN=1;SAF=0;SAP=7.35324;SAR=2;SRF=0;SRP=0;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL ./.:.:.:.:.:.:.:. ./.:.:.:.:.:.:.:. 1/1:2:0,2:0:0:2:66:-6.26831,-0.60206,0 dDocent_Contig_7494 67 . T C 1512.77 . AB=0.716216;ABP=33.0588;AC=3;AF=0.5;AN=6;AO=53;CIGAR=1X2M;DP=74;DPB=74;DPRA=0;EPP=118.098;EPPR=39.9253;GTI=0;LEN=1;MEANALT=2;MQM=60;MQMR=60;NS=3;NUMALT=2;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=1973;QR=617;RO=17;RPL=53;RPP=118.098;RPPR=39.9253;RPR=0;RUN=1;SAF=53;SAP=118.098;SAR=0;SRF=17;SRP=39.9253;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|1:36:6,2,27:6:203:2,27:66,1028:-82.575,-79.0484,-94.8946,0,-11.1357,-8.34393 0|1:18:8,0,10:8:304:0,10:0,369:-28.1382,-30.5465,-55.4826,0,-25.311,-22.3007 0|1:20:3,1,16:3:110:1,16:37,576:-46.0858,-43.9613,-52.6528,0,-5.96112,-4.17248 dDocent_Contig_7495 15 . A G 888.815 . AB=0.469697;ABP=3.53672;AC=2;AF=0.333333;AN=6;AO=34;CIGAR=1X;DP=180;DPB=180;DPRA=0;EPP=76.8404;EPPR=320.045;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=1363;QR=5712;RO=146;RPL=0;RPP=76.8404;RPPR=320.045;RPR=34;RUN=1;SAF=34;SAP=76.8404;SAR=0;SRF=146;SRP=320.045;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:114:111,3:111:4352:3:123:0,-22.8526,-380.203 0/1:19:7,12:7:269:12:481:-37.9208,0,-18.8516 0/1:47:28,19:28:1091:19:759:-54.4835,0,-84.3362 dDocent_Contig_7496 118 . C T 233.667 . AB=0.37931;ABP=6.67934;AC=2;AF=0.5;AN=4;AO=11;CIGAR=1X;DP=29;DPB=29;DPRA=0;EPP=26.8965;EPPR=42.0968;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=2;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=390;QR=647;RO=18;RPL=0;RPP=26.8965;RPPR=42.0968;RPR=11;RUN=1;SAF=0;SAP=26.8965;SAR=11;SRF=0;SRP=42.0968;SRR=18;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:14:10,4:10:358:4:144:-9.0992,0,-28.3485 ./.:.:.:.:.:.:.:. 0/1:15:8,7:8:289:7:246:-17.9665,0,-21.8428 dDocent_Contig_7497 49 . T A 366.814 . AB=0.416667;ABP=5.18177;AC=3;AF=0.5;AN=6;AO=15;CIGAR=1X;DP=36;DPB=36;DPRA=0;EPP=35.5824;EPPR=48.6112;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=3.46945e-18;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=577;QR=715;RO=21;RPL=0;RPP=35.5824;RPPR=48.6112;RPR=15;RUN=1;SAF=15;SAP=35.5824;SAR=0;SRF=21;SRP=48.6112;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:17:14,3:14:484:3:120:-6.07018,0,-38.7566 0/1:4:1,3:1:39:3:103:-8.40299,0,-2.69244 0/1:15:6,9:6:192:9:354:-27.7026,0,-13.0712 dDocent_Contig_7498 19 . G T 1410.43 . AB=0.57971;ABP=6.81824;AC=4;AF=0.666667;AN=6;AO=45;CIGAR=1X2M;DP=74;DPB=74;DPRA=0;EPP=100.727;EPPR=50.7827;GTI=0;LEN=1;MEANALT=1.33333;MQM=60;MQMR=60;NS=3;NUMALT=2;ODDS=6.93889e-18;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=1807;QR=879;RO=22;RPL=0;RPP=100.727;RPPR=50.7827;RPR=45;RUN=1;SAF=45;SAP=100.727;SAR=0;SRF=22;SRP=50.7827;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|1:53:9,7,37:9:359:7,37:275,1493:-120.372,-100.466,-127.924,0,-6.9553,-18.431 1|1:5:0,0,5:0:0:0,5:0,198:-18.195,-18.195,-18.195,-1.50515,-1.50515,0 0|1:16:13,0,3:13:520:0,3:0,116:-5.99903,-9.91242,-52.7581,0,-43.2344,-42.3313 dDocent_Contig_7499 42 . T A 783.793 . AB=0.225;ABP=108.11;AC=2;AF=0.333333;AN=6;AO=36;CIGAR=1X;DP=164;DPB=164;DPRA=20;EPP=81.1833;EPPR=280.959;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=1438;QR=5111;RO=128;RPL=0;RPP=81.1833;RPPR=280.959;RPR=36;RUN=1;SAF=36;SAP=81.1833;SAR=0;SRF=128;SRP=280.959;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:104:82,22:82:3270:22:867:-47.0279,0,-263.05 0/0:4:4,0:4:162:0:0:0,-1.20412,-14.9667 0/1:56:42,14:42:1679:14:571:-34.8742,0,-134.479 dDocent_Contig_7500 92 . G T 76.1924 . AB=0.2;ABP=26.4622;AC=3;AF=0.5;AN=6;AO=6;CIGAR=1X;DP=30;DPB=30;DPRA=0;EPP=16.0391;EPPR=55.1256;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=52.6667;NS=3;NUMALT=1;ODDS=1.73472e-18;PAIRED=1;PAIREDR=0.833333;PAO=0;PQA=0;PQR=0;PRO=0;QA=213;QR=867;RO=24;RPL=6;RPP=16.0391;RPPR=55.1256;RPR=0;RUN=1;SAF=6;SAP=16.0391;SAR=0;SRF=24;SRP=55.1256;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:3:1,2:1:37:2:70:-5.74403,0,-2.79474 0/1:12:11,1:11:407:1:37:-0.0854694,0,-25.7253 0/1:15:12,3:12:423:3:106:-5.37371,0,-33.8908 dDocent_Contig_7501 25 . C T 175.272 . AB=0.164384;ABP=74.4309;AC=2;AF=0.333333;AN=6;AO=14;CIGAR=1X;DP=115;DPB=115;DPRA=0;EPP=33.4109;EPPR=222.329;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=6.93889e-18;PAIRED=0.928571;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=549;QR=4054;RO=101;RPL=0;RPP=33.4109;RPPR=222.329;RPR=14;RUN=1;SAF=14;SAP=33.4109;SAR=0;SRF=101;SRP=222.329;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:57:48,9:48:1920:9:357:-15.3305,0,-155.84 0/1:16:13,3:13:525:3:113:-5.71954,0,-42.78 0/0:42:40,2:40:1609:2:79:0,-5.14602,-137.545 dDocent_Contig_7502 9 . A G 85.1141 . AB=0.333333;ABP=5.9056;AC=1;AF=0.166667;AN=6;AO=4;CIGAR=1X;DP=24;DPB=24;DPRA=2;EPP=11.6962;EPPR=46.4397;GTI=0;LEN=1;MEANALT=1;MQM=57;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=0;PAIREDR=0.95;PAO=0;PQA=0;PQR=0;PRO=0;QA=151;QR=774;RO=20;RPL=0;RPP=11.6962;RPPR=46.4397;RPR=4;RUN=1;SAF=4;SAP=11.6962;SAR=0;SRF=20;SRP=46.4397;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:10:10,0:10:389:0:0:0,-3.0103,-35.3684 0/1:12:8,4:8:307:4:151:-10.335,0,-24.3788 0/0:2:2,0:2:78:0:0:0,-0.60206,-7.40347 dDocent_Contig_7503 12 . C A 60.0024 . AB=0.108696;ABP=125.368;AC=2;AF=0.333333;AN=6;AO=10;CIGAR=1X;DP=109;DPB=109;DPRA=2.70588;EPP=24.725;EPPR=217.986;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=405;QR=4022;RO=99;RPL=0;RPP=24.725;RPPR=217.986;RPR=10;RUN=1;SAF=10;SAP=24.725;SAR=0;SRF=99;SRP=217.986;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:50:45,5:45:1830:5:204:-3.69253,0,-149.849 0/0:17:17,0:17:689:0:0:0,-5.11751,-62.3391 0/1:42:37,5:37:1503:5:201:-5.82763,0,-122.862 dDocent_Contig_7504 7 . T C 40.9889 . AB=0.666667;ABP=3.73412;AC=1;AF=0.166667;AN=6;AO=6;CIGAR=1X;DP=84;DPB=84;DPRA=1.05556;EPP=16.0391;EPPR=172.385;GTI=0;LEN=1;MEANALT=1;MQM=40;MQMR=58.1538;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=0.961538;PAO=0;PQA=0;PQR=0;PRO=0;QA=232;QR=3005;RO=78;RPL=0;RPP=16.0391;RPPR=172.385;RPR=6;RUN=1;SAF=6;SAP=16.0391;SAR=0;SRF=78;SRP=172.385;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:54:50,4:50:1925:4:156:0,-2.76497,-160 0/1:3:1,2:1:39:2:76:-5.90814,0,-2.98833 0/0:27:27,0:27:1041:0:0:0,-8.12781,-87.7565 dDocent_Contig_7505 25 . C G 89.816 . 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AB=0.277778;ABP=18.4519;AC=1;AF=0.166667;AN=6;AO=10;CIGAR=1X;DP=59;DPB=59;DPRA=3.13043;EPP=24.725;EPPR=109.412;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=1.73472e-18;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=396;QR=1958;RO=49;RPL=0;RPP=24.725;RPPR=109.412;RPR=10;RUN=1;SAF=10;SAP=24.725;SAR=0;SRF=49;SRP=109.412;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:36:26,10:26:1034:10:396:-25.1619,0,-82.5137 0/0:1:1,0:1:38:0:0:0,-0.30103,-3.79727 0/0:22:22,0:22:886:0:0:0,-6.62266,-80.0492 dDocent_Contig_7514 32 . G A 55.9725 . 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AB=0.145833;ABP=55.3066;AC=1;AF=0.166667;AN=6;AO=13;CIGAR=1X;DP=185;DPB=185;DPRA=4.36842;EPP=31.2394;EPPR=367.868;GTI=0;LEN=1;MEANALT=1;MQM=57.8462;MQMR=59.3372;NS=3;NUMALT=1;ODDS=0;PAIRED=0.461538;PAIREDR=0.784884;PAO=0;PQA=0;PQR=0;PRO=0;QA=514;QR=6888;RO=172;RPL=0;RPP=31.2394;RPPR=376.504;RPR=13;RUN=1;SAF=13;SAP=31.2394;SAR=0;SRF=171;SRP=367.868;SRR=1;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:118:112,6:112:4503:6:235:0,-14.0013,-381.919 0/0:19:19,0:19:770:0:0:0,-5.71957,-69.6203 0/1:48:41,7:41:1615:7:279:-10.9401,0,-131.121 dDocent_Contig_7516 107 . N C 613.958 . AB=0;ABP=0;AC=6;AF=1;AN=6;AO=20;CIGAR=1X;DP=20;DPB=20;DPRA=0;EPP=46.4397;EPPR=0;GTI=0;LEN=1;MEANALT=1;MQM=49.5;MQMR=0;NS=3;NUMALT=1;ODDS=0;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=668;QR=0;RO=0;RPL=0;RPP=46.4397;RPPR=0;RPR=20;RUN=1;SAF=0;SAP=46.4397;SAR=20;SRF=0;SRP=0;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 1/1:11:0,11:0:0:11:367:-33.1655,-3.31133,0 1/1:5:0,5:0:0:5:174:-15.9139,-1.50515,0 1/1:4:0,4:0:0:4:127:-11.7143,-1.20412,0 dDocent_Contig_7517 8 . T G 112.56 . AB=0.333333;ABP=7.35324;AC=2;AF=0.333333;AN=6;AO=6;CIGAR=1X;DP=31;DPB=31;DPRA=0.692308;EPP=16.0391;EPPR=57.2971;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=216;QR=958;RO=25;RPL=0;RPP=16.0391;RPPR=57.2971;RPR=6;RUN=1;SAF=6;SAP=16.0391;SAR=0;SRF=25;SRP=57.2971;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:13:13,0:13:497:0:0:0,-3.91339,-45.0765 0/1:14:9,5:9:344:5:177:-12.058,0,-27.1033 0/1:4:3,1:3:117:1:39:-2.69244,0,-9.70626 dDocent_Contig_7518 19 . G A 55.6265 . AB=0.138889;ABP=43.7857;AC=1;AF=0.166667;AN=6;AO=5;CIGAR=1X;DP=45;DPB=45;DPRA=8;EPP=13.8677;EPPR=89.8692;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=195;QR=1599;RO=40;RPL=0;RPP=13.8677;RPPR=89.8692;RPR=5;RUN=1;SAF=5;SAP=13.8677;SAR=0;SRF=40;SRP=89.8692;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:36:31,5:31:1237:5:195:-7.08479,0,-100.768 0/0:1:1,0:1:41:0:0:0,-0.30103,-4.09457 0/0:8:8,0:8:321:0:0:0,-2.40824,-29.2583 dDocent_Contig_7519 16 . G T 176.068 . AB=0.175439;ABP=55.1637;AC=2;AF=0.333333;AN=6;AO=10;CIGAR=1X2M1X;DP=68;DPB=68;DPRA=2.59091;EPP=24.725;EPPR=124.613;GTI=0;LEN=1;MEANALT=1.5;MQM=60;MQMR=52.5893;NS=3;NUMALT=1;ODDS=0;PAIRED=0;PAIREDR=0.392857;PAO=0;PQA=0;PQR=0;PRO=0;QA=399;QR=2196;RO=56;RPL=0;RPP=24.725;RPPR=124.613;RPR=10;RUN=1;SAF=10;SAP=24.725;SAR=0;SRF=56;SRP=124.613;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|1:33:24,8:24:931:8:320:-19.1269,0,-69.4181 0|0:11:10,0:10:394:0:0:0,-3.0103,-35.4113 0|1:24:22,2:22:871:2:79:-0.272912,0,-64.2148 dDocent_Contig_7520 13 . T C 159.556 . AB=0.142857;ABP=18.5208;AC=4;AF=0.666667;AN=6;AO=6;CIGAR=1X;DP=18;DPB=18;DPRA=0;EPP=16.0391;EPPR=29.068;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=245;QR=464;RO=12;RPL=0;RPP=16.0391;RPPR=29.068;RPR=6;RUN=1;SAF=6;SAP=16.0391;SAR=0;SRF=12;SRP=29.068;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:8:7,1:7:272:1:41:-1.68633,0,-22.4368 1/1:4:0,4:0:0:4:164:-15.1499,-1.20412,0 0/1:6:5,1:5:192:1:40:-2.1895,0,-15.8416 dDocent_Contig_7521 24 . T C 1005.79 . AB=0.357143;ABP=17.9004;AC=3;AF=0.5;AN=6;AO=30;CIGAR=1X7M;DP=84;DPB=84;DPRA=0;EPP=68.1545;EPPR=72.4974;GTI=0;LEN=1;MEANALT=2.66667;MQM=60;MQMR=60;NS=3;NUMALT=3;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=1196;QR=1245;RO=32;RPL=0;RPP=68.1545;RPPR=72.4974;RPR=30;RUN=1;SAF=30;SAP=68.1545;SAR=0;SRF=32;SRP=72.4974;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|1:54:23,7,4,20:23:895:7,4,20:281,146,795:-58.5322,-42.2998,-113.741,-53.5381,-103.929,-125.88,0,-50.3934,-61.6317,-67.5301 0|1:12:8,0,0,3:8:310:0,0,3:0,0,119:-7.60962,-10.0179,-35.5258,-10.0179,-35.5258,-35.5258,0,-25.7199,-25.7199,-24.8168 0|1:18:1,4,6,7:1:40:4,6,7:157,246,282:-39.96,-27.3517,-29.4422,-19.9527,-10.3387,-21.4417,-17.0183,-7.40636,0,-18.2059 dDocent_Contig_7522 35 . T C 483.28 . AB=0.5;ABP=3.0103;AC=2;AF=0.5;AN=4;AO=17;CIGAR=1X4M;DP=34;DPB=34;DPRA=0;EPP=39.9253;EPPR=35.5824;GTI=0;LEN=1;MEANALT=1.5;MQM=60;MQMR=60;NS=2;NUMALT=2;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=681;QR=588;RO=15;RPL=0;RPP=39.9253;RPPR=35.5824;RPR=17;RUN=1;SAF=17;SAP=39.9253;SAR=0;SRF=15;SRP=35.5824;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|1:24:8,2,14:8:309:2,14:74,562:-43.9422,-40.6162,-65.38,0,-19.6644,-21.1837 .:.:.:.:.:.:.:. 0|1:10:7,0,3:7:279:0,3:0,119:-8.08471,-10.1919,-33.1694,0,-23.3743,-22.4712 dDocent_Contig_7523 12 . A G 105.252 . AB=0.444444;ABP=3.25157;AC=1;AF=0.166667;AN=6;AO=4;CIGAR=1X;DP=102;DPB=102;DPRA=0.193548;EPP=11.6962;EPPR=215.815;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=0.826531;PAO=0;PQA=0;PQR=0;PRO=0;QA=163;QR=3890;RO=98;RPL=0;RPP=11.6962;RPPR=215.815;RPR=4;RUN=1;SAF=4;SAP=11.6962;SAR=0;SRF=98;SRP=215.815;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:63:63,0:63:2503:0:0:0,-18.9649,-225.406 0/1:9:5,4:5:182:4:163:-12.3492,0,-14.0229 0/0:30:30,0:30:1205:0:0:0,-9.0309,-108.721 dDocent_Contig_7526 28 . G C 117.115 . AB=0.277778;ABP=10.7311;AC=1;AF=0.166667;AN=6;AO=5;CIGAR=1X;DP=30;DPB=30;DPRA=3;EPP=13.8677;EPPR=57.2971;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=1.73472e-18;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=203;QR=986;RO=25;RPL=0;RPP=13.8677;RPPR=57.2971;RPR=5;RUN=1;SAF=5;SAP=13.8677;SAR=0;SRF=25;SRP=57.2971;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:18:13,5:13:521:5:203:-13.2343,0,-41.8181 0/0:5:5,0:5:198:0:0:0,-1.50515,-18.1971 0/0:7:7,0:7:267:0:0:0,-2.10721,-24.3858 dDocent_Contig_7527 17 . C T 542.663 . AB=0.571429;ABP=4.56135;AC=3;AF=0.5;AN=6;AO=20;CIGAR=1X;DP=35;DPB=35;DPRA=0;EPP=46.4397;EPPR=35.5824;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=3.46945e-18;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=767;QR=591;RO=15;RPL=0;RPP=46.4397;RPPR=35.5824;RPR=20;RUN=1;SAF=20;SAP=46.4397;SAR=0;SRF=15;SRP=35.5824;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:13:7,6:7:277:6:242:-18.2436,0,-21.3846 0/1:7:1,6:1:40:6:224:-18.4092,0,-1.88847 0/1:15:7,8:7:274:8:301:-22.9253,0,-20.5113 dDocent_Contig_7528 8 . T C 167.779 . AB=0.14;ABP=115.579;AC=1;AF=0.166667;AN=6;AO=18;CIGAR=1X;DP=159;DPB=159;DPRA=7.45;EPP=42.0968;EPPR=309.188;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=6.93889e-18;PAIRED=1;PAIREDR=0.992908;PAO=0;PQA=0;PQR=0;PRO=0;QA=690;QR=5477;RO=141;RPL=0;RPP=42.0968;RPPR=309.188;RPR=18;RUN=1;SAF=18;SAP=42.0968;SAR=0;SRF=141;SRP=309.188;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:100:86,14:86:3339:14:534:-18.3001,0,-270.537 0/0:10:10,0:10:387:0:0:0,-3.0103,-35.1875 0/0:49:45,4:45:1751:4:156:0,-0.333181,-143.425 dDocent_Contig_7529 7 . T A 157.387 . AB=0.212766;ABP=36.6912;AC=3;AF=0.5;AN=6;AO=10;CIGAR=1X2M2X;DP=47;DPB=47;DPRA=0;EPP=24.725;EPPR=83.3548;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=381;QR=1434;RO=37;RPL=0;RPP=24.725;RPPR=83.3548;RPR=10;RUN=1;SAF=10;SAP=24.725;SAR=0;SRF=37;SRP=83.3548;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|1:23:19,4:19:738:4:151:-7.03327,0,-59.8274 0|1:17:13,4:13:502:4:152:-8.93201,0,-40.4112 0|1:7:5,2:5:194:2:78:-5.29626,0,-15.7256 dDocent_Contig_7530 14 . A T 30.1864 . AB=0.136364;ABP=28.2783;AC=1;AF=0.166667;AN=6;AO=3;CIGAR=1X;DP=109;DPB=109;DPRA=0.505747;EPP=9.52472;EPPR=233.186;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=123;QR=4245;RO=106;RPL=0;RPP=9.52472;RPPR=233.186;RPR=3;RUN=1;SAF=3;SAP=9.52472;SAR=0;SRF=106;SRP=233.186;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:76:76,0:76:3051:0:0:0,-22.8783,-274.661 0/1:22:19,3:19:767:3:123:-4.84213,0,-62.7287 0/0:11:11,0:11:427:0:0:0,-3.31133,-38.7799 dDocent_Contig_7531 13 . A G 67.4334 . AB=0.147059;ABP=39.7976;AC=2;AF=0.5;AN=4;AO=5;CIGAR=1X;DP=34;DPB=34;DPRA=0;EPP=13.8677;EPPR=65.983;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=59.1724;NS=2;NUMALT=1;ODDS=0;PAIRED=0;PAIREDR=0.551724;PAO=0;PQA=0;PQR=0;PRO=0;QA=204;QR=1152;RO=29;RPL=0;RPP=13.8677;RPPR=65.983;RPR=5;RUN=1;SAF=5;SAP=13.8677;SAR=0;SRF=29;SRP=65.983;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:22:18,4:18:715:4:163:-8.43577,0,-58.0442 ./.:.:.:.:.:.:.:. 0/1:12:11,1:11:437:1:41:-0.482207,0,-36.0371 dDocent_Contig_7533 44 . C G 42.7856 . AB=0.1875;ABP=16.582;AC=1;AF=0.25;AN=4;AO=3;CIGAR=1X;DP=39;DPB=39;DPRA=0.695652;EPP=9.52472;EPPR=81.1833;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=2;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=119;QR=1428;RO=36;RPL=0;RPP=9.52472;RPPR=81.1833;RPR=3;RUN=1;SAF=3;SAP=9.52472;SAR=0;SRF=36;SRP=81.1833;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:23:23,0:23:910:0:0:0,-6.92369,-82.2118 ./.:.:.:.:.:.:.:. 0/1:16:13,3:13:518:3:119:-6.27853,0,-42.152 dDocent_Contig_7534 20 . T G 1319.39 . AB=0.317073;ABP=50.6768;AC=3;AF=0.5;AN=6;AO=52;CIGAR=1X;DP=164;DPB=164;DPRA=0;EPP=115.927;EPPR=229.154;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=59.1607;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=0.741071;PAO=0;PQA=0;PQR=0;PRO=0;QA=2065;QR=4487;RO=112;RPL=0;RPP=115.927;RPPR=246.215;RPR=52;RUN=1;SAF=52;SAP=115.927;SAR=0;SRF=110;SRP=229.154;SRR=2;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:90:53,37:53:2122:37:1472:-105.634,0,-161.144 0/1:17:9,8:9:365:8:310:-23.1432,0,-28.0971 0/1:57:50,7:50:2000:7:283:-8.68446,0,-163.033 dDocent_Contig_7535 19 . T A 674.176 . AB=0.333333;ABP=21.8297;AC=3;AF=0.5;AN=6;AO=26;CIGAR=1X2M;DP=78;DPB=78;DPRA=0;EPP=59.4686;EPPR=109.412;GTI=0;LEN=1;MEANALT=1.33333;MQM=60;MQMR=60;NS=3;NUMALT=2;ODDS=6.93889e-18;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=1018;QR=1969;RO=49;RPL=0;RPP=59.4686;RPPR=109.412;RPR=26;RUN=1;SAF=26;SAP=59.4686;SAR=0;SRF=49;SRP=109.412;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|1:49:27,0,22:27:1082:0,22:0,855:-62.5066,-70.6344,-159.78,0,-89.5395,-82.9168 0|1:16:11,3,2:11:443:3,2:121,82:-6.65896,0,-35.6029,-3.19949,-29.7368,-39.1091 0|1:13:11,0,2:11:444:0,2:0,81:-3.77234,-7.08367,-43.6842,0,-37.0048,-36.4028 dDocent_Contig_7536 26 . C T 190.738 . AB=0.347826;ABP=7.63648;AC=2;AF=0.333333;AN=6;AO=9;CIGAR=1X;DP=74;DPB=74;DPRA=0;EPP=22.5536;EPPR=144.156;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=360;QR=2619;RO=65;RPL=0;RPP=22.5536;RPPR=144.156;RPR=9;RUN=1;SAF=9;SAP=22.5536;SAR=0;SRF=65;SRP=144.156;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:51:50,1:50:2013:1:41:0,-11.258,-177.264 0/1:5:4,1:4:162:1:40:-2.49053,0,-13.4616 0/1:18:11,7:11:444:7:279:-20.0617,0,-34.8973 dDocent_Contig_7537 40 . T C 102.844 . AB=0.166667;ABP=43.5445;AC=1;AF=0.166667;AN=6;AO=7;CIGAR=1X;DP=169;DPB=169;DPRA=0.661417;EPP=18.2106;EPPR=354.789;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=271;QR=6063;RO=162;RPL=0;RPP=18.2106;RPPR=354.789;RPR=7;RUN=1;SAF=7;SAP=18.2106;SAR=0;SRF=162;SRP=354.789;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:111:111,0:111:4159:0:0:0,-33.4143,-374.402 0/0:16:16,0:16:589:0:0:0,-4.81648,-53.3414 0/1:42:35,7:35:1315:7:271:-12.1083,0,-105.995 dDocent_Contig_7538 8 . T A 94.122 . AB=0.175;ABP=39.7082;AC=2;AF=0.333333;AN=6;AO=7;CIGAR=1X;DP=50;DPB=50;DPRA=2;EPP=18.2106;EPPR=96.3836;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=3.46945e-18;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=269;QR=1652;RO=43;RPL=0;RPP=18.2106;RPPR=96.3836;RPR=7;RUN=1;SAF=7;SAP=18.2106;SAR=0;SRF=43;SRP=96.3836;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:26:23,3:23:887:3:115:-2.89811,0,-72.3224 0/0:10:10,0:10:384:0:0:0,-3.0103,-34.9158 0/1:14:10,4:10:381:4:154:-10.019,0,-30.4306 dDocent_Contig_7539 8 . T A 235.399 . AB=0.407407;ABP=5.02092;AC=3;AF=0.5;AN=6;AO=11;CIGAR=1X;DP=27;DPB=27;DPRA=0;EPP=26.8965;EPPR=37.7539;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=0.909091;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=401;QR=615;RO=16;RPL=0;RPP=26.8965;RPPR=37.7539;RPR=11;RUN=1;SAF=11;SAP=26.8965;SAR=0;SRF=16;SRP=37.7539;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:14:7,7:7:269:7:261:-19.631,0,-20.3602 0/1:4:3,1:3:113:1:39:-2.69244,0,-9.33529 0/1:9:6,3:6:233:3:101:-6.7109,0,-18.6308 dDocent_Contig_7540 197 . A G 377.429 . AB=0.521739;ABP=3.10471;AC=3;AF=0.5;AN=6;AO=14;CIGAR=1X;DP=41;DPB=41;DPRA=0;EPP=33.4109;EPPR=61.6401;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=544;QR=1023;RO=27;RPL=14;RPP=33.4109;RPPR=61.6401;RPR=0;RUN=1;SAF=0;SAP=33.4109;SAR=14;SRF=0;SRP=61.6401;SRR=27;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:17:16,1:16:599:1:39:0,-1.22095,-50.3476 1/1:1:0,1:0:0:1:39:-3.89656,-0.30103,0 0/1:23:11,12:11:424:12:466:-35.3683,0,-31.5903 dDocent_Contig_7542 36 . A G 550.401 . AB=0.217742;ABP=88.8185;AC=2;AF=0.333333;AN=6;AO=27;CIGAR=1X;DP=129;DPB=129;DPRA=12.4;EPP=61.6401;EPPR=224.5;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=6.93889e-18;PAIRED=0.666667;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=1058;QR=4067;RO=102;RPL=0;RPP=61.6401;RPPR=224.5;RPR=27;RUN=1;SAF=27;SAP=61.6401;SAR=0;SRF=102;SRP=224.5;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:94:71,23:71:2809:23:906:-53.5461,0,-224.622 0/0:5:5,0:5:204:0:0:0,-1.50515,-18.744 0/1:30:26,4:26:1054:4:152:-5.01675,0,-86.1172 dDocent_Contig_7543 9 . A G 58.4267 . AB=0.375;ABP=4.09604;AC=1;AF=0.166667;AN=6;AO=4;CIGAR=1X;DP=47;DPB=47;DPRA=0.44;EPP=11.6962;EPPR=94.2121;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=0.904762;PAO=0;PQA=0;PQR=0;PRO=0;QA=147;QR=1623;RO=42;RPL=0;RPP=11.6962;RPPR=94.2121;RPR=4;RUN=1;SAF=4;SAP=11.6962;SAR=0;SRF=42;SRP=94.2121;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:25:24,0:24:933:0:0:0,-7.22472,-84.1648 0/0:14:13,1:13:502:1:39:0,-0.317855,-41.632 0/1:8:5,3:5:188:3:108:-7.66589,0,-14.8757 dDocent_Contig_7544 19 . T C 2210.6 . AB=0.0714286;ABP=271.032;AC=3;AF=0.5;AN=6;AO=12;CIGAR=1M5I1X4M;DP=168;DPB=246.333;DPRA=0;EPP=29.068;EPPR=161.528;GTI=0;LEN=1;MEANALT=2.66667;MQM=60;MQMR=60;NS=3;NUMALT=2;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=474;QR=2879;RO=73;RPL=0;RPP=29.068;RPPR=161.528;RPR=12;RUN=1;SAF=12;SAP=29.068;SAR=0;SRF=73;SRP=161.528;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|1:112:51,52,4:51:2011:52,4:2046,160:-152.963,0,-149.806,-155.135,-152.279,-319.38 0|1:10:3,6,1:3:118:6,1:238,39:-18.6947,0,-7.90297,-16.3928,-6.50409,-25.7974 0|1:46:19,19,7:19:750:19,7:738,275:-54.9257,0,-56.0016,-38.0241,-39.1016,-97.632 dDocent_Contig_7545 47 . C A 92.8549 . AB=0.8;ABP=6.91895;AC=1;AF=0.166667;AN=6;AO=4;CIGAR=1X;DP=36;DPB=36;DPRA=0.322581;EPP=11.6962;EPPR=72.4974;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=0.25;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=136;QR=1237;RO=32;RPL=0;RPP=11.6962;RPPR=72.4974;RPR=4;RUN=1;SAF=4;SAP=11.6962;SAR=0;SRF=32;SRP=72.4974;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:20:20,0:20:806:0:0:0,-6.0206,-72.8573 0/1:5:1,4:1:40:4:136:-11.065,0,-2.49053 0/0:11:11,0:11:391:0:0:0,-3.31133,-35.5129 dDocent_Contig_7546 112 . G A 134.895 . AB=0;ABP=0;AC=0;AF=0;AN=6;AO=13;CIGAR=1X2M1X;DP=359;DPB=359;DPRA=0;EPP=31.2394;EPPR=139.813;GTI=0;LEN=1;MEANALT=5.66667;MQM=6.15385;MQMR=21.9841;NS=3;NUMALT=3;ODDS=0;PAIRED=0;PAIREDR=0.365079;PAO=0;PQA=0;PQR=0;PRO=0;QA=418;QR=2097;RO=63;RPL=0;RPP=31.2394;RPPR=139.813;RPR=13;RUN=1;SAF=0;SAP=31.2394;SAR=13;SRF=0;SRP=139.813;SRR=63;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|0:190:37,2,119,26:37:1226:2,119,26:61,824,160:0,-10.4831,-52.2869,-2.0967,-43.8884,-8.71951,-10.2846,-52.039,-43.7257,-44.8669 0|0:66:2,10,40,11:2:69:10,40,11:322,257,71:-13.3134,-11.5498,-8.8372,-11.7437,-9.6716,0,-13.2975,-11.229,-11.429,-10.2837 0|0:103:24,1,60,16:24:802:1,60,16:35,393,95:0,-6.98586,-38.3066,-3.37066,-34.8017,-16.9772,-6.96272,-38.3514,-34.8241,-33.7733 dDocent_Contig_7547 10 . C T 58.4402 . AB=0.230769;ABP=11.1951;AC=1;AF=0.166667;AN=6;AO=3;CIGAR=1X;DP=29;DPB=29;DPRA=1.625;EPP=9.52472;EPPR=59.4686;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=0.333333;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=121;QR=1023;RO=26;RPL=0;RPP=9.52472;RPPR=59.4686;RPR=3;RUN=1;SAF=3;SAP=9.52472;SAR=0;SRF=26;SRP=59.4686;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:13:10,3:10:402:3:121:-7.36681,0,-32.6261 0/0:4:4,0:4:161:0:0:0,-1.20412,-14.8753 0/0:12:12,0:12:460:0:0:0,-3.61236,-41.7413 dDocent_Contig_7548 22 . A C 163.125 . AB=0.269231;ABP=15.0369;AC=1;AF=0.166667;AN=6;AO=7;CIGAR=1X;DP=61;DPB=61;DPRA=1.48571;EPP=18.2106;EPPR=120.27;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=0.703704;PAO=0;PQA=0;PQR=0;PRO=0;QA=281;QR=2124;RO=54;RPL=0;RPP=18.2106;RPPR=120.27;RPR=7;RUN=1;SAF=7;SAP=18.2106;SAR=0;SRF=54;SRP=120.27;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:26:19,7:19:741:7:281:-17.8354,0,-59.1875 0/0:10:10,0:10:393:0:0:0,-3.0103,-35.7268 0/0:25:25,0:25:990:0:0:0,-7.52575,-89.3983 dDocent_Contig_7550 44 . C T 38.0555 . AB=0.109091;ABP=76.0113;AC=1;AF=0.166667;AN=6;AO=6;CIGAR=1X2M1X;DP=80;DPB=80;DPRA=4.4;EPP=16.0391;EPPR=163.699;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=239;QR=2927;RO=74;RPL=0;RPP=16.0391;RPPR=163.699;RPR=6;RUN=1;SAF=6;SAP=16.0391;SAR=0;SRF=74;SRP=163.699;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|1:55:49,6:49:1934:6:239:-5.32836,0,-157.716 0|0:13:13,0:13:517:0:0:0,-3.91339,-46.8785 0|0:12:12,0:12:476:0:0:0,-3.61236,-43.1915 dDocent_Contig_7551 16 . A C 117.714 . AB=0.163265;ABP=51.2702;AC=2;AF=0.5;AN=4;AO=8;CIGAR=1X;DP=49;DPB=49;DPRA=0;EPP=20.3821;EPPR=92.0407;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=2;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=327;QR=1591;RO=41;RPL=0;RPP=20.3821;RPPR=92.0407;RPR=8;RUN=1;SAF=8;SAP=20.3821;SAR=0;SRF=41;SRP=92.0407;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:34:28,6:28:1072:6:245:-12.1945,0,-86.5238 ./.:.:.:.:.:.:.:. 0/1:15:13,2:13:519:2:82:-3.26423,0,-42.5388 dDocent_Contig_7552 98 . N T 1366.68 . AB=0;ABP=0;AC=6;AF=1;AN=6;AO=41;CIGAR=5X;DP=41;DPB=41;DPRA=0;EPP=92.0407;EPPR=0;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=0;NS=3;NUMALT=1;ODDS=0;PAIRED=0.95122;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=1502;QR=0;RO=0;RPL=41;RPP=92.0407;RPPR=0;RPR=0;RUN=1;SAF=41;SAP=92.0407;SAR=0;SRF=0;SRP=0;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 1|1:27:0,27:0:0:27:999:-90.2249,-8.12781,0 1|1:6:0,6:0:0:6:215:-19.6986,-1.80618,0 1|1:8:0,8:0:0:8:288:-26.2669,-2.40824,0 dDocent_Contig_7553 116 . C T 338.19 . AB=0.483871;ABP=3.08035;AC=3;AF=0.5;AN=6;AO=15;CIGAR=1X;DP=31;DPB=31;DPRA=0;EPP=35.5824;EPPR=37.7539;GTI=0;LEN=1;MEANALT=1;MQM=51;MQMR=55.6875;NS=3;NUMALT=1;ODDS=0;PAIRED=0.6;PAIREDR=0.8125;PAO=0;PQA=0;PQR=0;PRO=0;QA=534;QR=575;RO=16;RPL=0;RPP=35.5824;RPPR=37.7539;RPR=15;RUN=1;SAF=0;SAP=35.5824;SAR=15;SRF=0;SRP=37.7539;SRR=16;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:12:8,4:8:287:4:144:-9.51114,0,-22.5641 0/1:9:3,6:3:108:6:211:-16.5311,0,-6.65994 0/1:10:5,5:5:180:5:179:-13.2996,0,-13.5418 dDocent_Contig_7554 35 . C A 181.013 . AB=0.25;ABP=20.3821;AC=1;AF=0.166667;AN=6;AO=8;CIGAR=1X;DP=41;DPB=41;DPRA=7.11111;EPP=20.3821;EPPR=74.6689;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=321;QR=1328;RO=33;RPL=0;RPP=20.3821;RPPR=74.6689;RPR=8;RUN=1;SAF=8;SAP=20.3821;SAR=0;SRF=33;SRP=74.6689;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:32:24,8:24:962:8:321:-19.624,0,-77.2463 0/0:4:4,0:4:163:0:0:0,-1.20412,-15.0584 0/0:5:5,0:5:203:0:0:0,-1.50515,-18.6531 dDocent_Contig_7555 106 . N T 267.739 . AB=0;ABP=0;AC=4;AF=1;AN=4;AO=9;CIGAR=2X;DP=9;DPB=9;DPRA=0;EPP=22.5536;EPPR=0;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=0;NS=2;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=287;QR=0;RO=0;RPL=0;RPP=22.5536;RPPR=0;RPR=9;RUN=1;SAF=0;SAP=22.5536;SAR=9;SRF=0;SRP=0;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 1|1:6:0,6:0:0:6:183:-16.7695,-1.80618,0 .:.:.:.:.:.:.:. 1|1:3:0,3:0:0:3:104:-9.70309,-0.90309,0 dDocent_Contig_7556 170 . G A 135.262 . AB=0.291667;ABP=12.0581;AC=3;AF=0.5;AN=6;AO=7;CIGAR=1X;DP=24;DPB=24;DPRA=0;EPP=18.2106;EPPR=39.9253;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=279;QR=667;RO=17;RPL=7;RPP=18.2106;RPPR=39.9253;RPR=0;RUN=1;SAF=0;SAP=18.2106;SAR=7;SRF=0;SRP=39.9253;SRR=17;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:5:2,3:2:74:3:122:-9.86734,0,-5.51887 0/1:8:6,2:6:243:2:79:-5.089,0,-19.8394 0/1:11:9,2:9:350:2:78:-4.09145,0,-28.5426 dDocent_Contig_7557 16 . A G 219.372 . AB=0.207547;ABP=42.3836;AC=1;AF=0.166667;AN=6;AO=12;CIGAR=1M7D3M3D1M2X;DP=80;DPB=72.9412;DPRA=2.83333;EPP=29.068;EPPR=150.67;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=474;QR=2676;RO=68;RPL=0;RPP=29.068;RPPR=150.67;RPR=12;RUN=1;SAF=12;SAP=29.068;SAR=0;SRF=68;SRP=150.67;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|1:53:42,11:42:1665:11:434:-23.4597,0,-134.139 0|0:12:12,0:12:472:0:0:0,-3.61236,-42.8319 0|0:15:14,1:14:539:1:40:0,-0.519771,-44.8499 dDocent_Contig_7558 7 . T C 1603.56 . AB=0.241758;ABP=55.7222;AC=2;AF=0.333333;AN=6;AO=22;CIGAR=1X3M1D1M1X;DP=91;DPB=87.2857;DPRA=0;EPP=50.7827;EPPR=35.5824;GTI=0;LEN=1;MEANALT=4;MQM=60;MQMR=60;NS=3;NUMALT=3;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=843;QR=582;RO=15;RPL=0;RPP=50.7827;RPPR=35.5824;RPR=22;RUN=1;SAF=22;SAP=50.7827;SAR=0;SRF=15;SRP=35.5824;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|0:48:9,8,3,25:9:348:8,3,25:316,114,998:-79.4838,-56.1898,-82.3625,-72.8463,-75.4238,-100.524,0,-2.57469,-19.2341,-21.0548 1|0:31:6,10,0,13:6:234:10,0,13:371,0,498:-50.1598,-21.6168,-37.8434,-51.966,-40.8537,-71.2033,-11.1036,0,-30.344,-26.4307 1|0:12:0,4,1,7:0:0:4,1,7:156,41,284:-36.235,-23.4173,-22.2132,-32.8501,-20.0327,-32.549,-12.8072,0,-9.41916,-10.7 dDocent_Contig_7559 117 . A T 437.986 . AB=0.179612;ABP=186.679;AC=2;AF=0.333333;AN=6;AO=41;CIGAR=1X;DP=260;DPB=260;DPRA=0;EPP=92.0407;EPPR=478.563;GTI=0;LEN=1;MEANALT=1;MQM=40;MQMR=33.5708;NS=3;NUMALT=1;ODDS=1.38778e-17;PAIRED=1;PAIREDR=0.968037;PAO=0;PQA=0;PQR=0;PRO=0;QA=1379;QR=7435;RO=219;RPL=0;RPP=92.0407;RPPR=478.563;RPR=41;RUN=1;SAF=0;SAP=92.0407;SAR=41;SRF=0;SRP=478.563;SRR=219;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:135:106,29:106:3623:29:968:-44.2866,0,-219.457 0/0:54:50,4:50:1684:4:135:0,-4.12641,-107.234 0/1:71:63,8:63:2128:8:276:-3.02133,0,-145.917 dDocent_Contig_7560 9 . A G 662.536 . AB=0.411765;ABP=5.30951;AC=4;AF=0.666667;AN=6;AO=23;CIGAR=1X;DP=43;DPB=43;DPRA=0;EPP=52.9542;EPPR=46.4397;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=877;QR=748;RO=20;RPL=0;RPP=52.9542;RPPR=46.4397;RPR=23;RUN=1;SAF=23;SAP=52.9542;SAR=0;SRF=20;SRP=46.4397;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:22:12,10:12:452:10:388:-28.6554,0,-34.4019 1/1:9:0,9:0:0:9:336:-30.5919,-2.70927,0 0/1:12:8,4:8:296:4:153:-10.5292,0,-23.3791 dDocent_Contig_7562 11 . T G 6303.1 . AB=0.041841;ABP=438.768;AC=0;AF=0;AN=6;AO=10;CIGAR=3M1X10M;DP=259;DPB=245.786;DPRA=0;EPP=24.725;EPPR=50.7827;GTI=0;LEN=1;MEANALT=4.5;MQM=52;MQMR=60;NS=3;NUMALT=4;ODDS=2.77556e-17;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=398;QR=868;RO=22;RPL=0;RPP=24.725;RPPR=50.7827;RPR=10;RUN=1;SAF=10;SAP=24.725;SAR=0;SRF=22;SRP=50.7827;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|0:168:10,14,0,138,4:10:398:14,0,138,4:535,0,5309,156:-443.892,-403.005,-431.564,-446.902,-435.778,-479.676,-11.1171,0,-43.8972,-2.35504,-434.153,-423.029,-466.926,-31.147,-465.722 0|0:20:1,2,0,17,0:1:39:2,0,17,0:76,0,635,0:-54.6895,-48.7569,-51.3617,-54.9905,-51.9637,-58.1972,-3.01708,0,-6.22627,-1.10876,-54.9905,-51.9637,-58.1972,-6.22627,-58.1972 0|0:71:11,5,5,44,6:11:431:5,5,44,6:195,189,1700,242:-136.285,-123.567,-157.503,-124.104,-143.516,-158.04,0,-19.4122,-19.9513,-22.196,-119.777,-139.189,-139.727,-15.6213,-153.413 dDocent_Contig_7563 8 . T A 1859.01 . AB=0.342391;ABP=42.7105;AC=2;AF=0.333333;AN=6;AO=63;CIGAR=2M1X1M1X;DP=184;DPB=179.2;DPRA=0;EPP=139.813;EPPR=213.643;GTI=0;LEN=1;MEANALT=2;MQM=60;MQMR=60;NS=3;NUMALT=2;ODDS=2.77556e-17;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=2404;QR=3731;RO=97;RPL=0;RPP=139.813;RPPR=213.643;RPR=63;RUN=1;SAF=63;SAP=139.813;SAR=0;SRF=97;SRP=213.643;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|1:97:59,36,2:59:2268:36,2:1380,78:-95.4946,0,-175.35,-106.843,-179.776,-292.435 0|0:36:14,7,15:14:542:7,15:259,546:-40.3752,-23.4008,-65.8295,0,-23.3549,-40.0206 0|1:51:24,20,7:24:921:20,7:765,264:-55.5539,0,-69.5837,-41.1441,-53.9699,-114.637 dDocent_Contig_7565 23 . A C 950.564 . AB=0.126214;ABP=128.007;AC=0;AF=0;AN=6;AO=13;CIGAR=6M1X6M;DP=121;DPB=123.692;DPRA=2.86111;EPP=31.2394;EPPR=161.528;GTI=0;LEN=1;MEANALT=2;MQM=60;MQMR=60;NS=3;NUMALT=2;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=524;QR=2873;RO=73;RPL=0;RPP=31.2394;RPPR=161.528;RPR=13;RUN=1;SAF=13;SAP=31.2394;SAR=0;SRF=73;SRP=161.528;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|0:79:40,30,9:40:1569:30,9:1203,366:-87.0704,0,-119.987,-68.9207,-98.8257,-195.236 0|0:18:18,0,0:18:711:0,0:0,0:0,-5.41854,-64.3199,-5.41854,-64.3199,-64.3199 0|0:24:15,5,4:15:593:5,4:195,158:-11.5088,0,-47.2954,-3.02136,-35.8,-50.6216 dDocent_Contig_7567 16 . C A 82.959 . AB=0.166667;ABP=37.7539;AC=2;AF=0.333333;AN=6;AO=6;CIGAR=1X;DP=37;DPB=37;DPRA=18;EPP=16.0391;EPPR=70.3259;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=243;QR=1231;RO=31;RPL=0;RPP=16.0391;RPPR=70.3259;RPR=6;RUN=1;SAF=6;SAP=16.0391;SAR=0;SRF=31;SRP=70.3259;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:23:19,4:19:752:4:162:-8.04327,0,-61.0788 0/0:1:1,0:1:41:0:0:0,-0.30103,-4.09457 0/1:13:11,2:11:438:2:81:-3.77234,0,-35.8602 dDocent_Contig_7569 13 . G A 192.881 . AB=0.257143;ABP=20.9405;AC=2;AF=0.333333;AN=6;AO=9;CIGAR=1X;DP=45;DPB=45;DPRA=1.75;EPP=9.04217;EPPR=43.7857;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=51.4444;NS=3;NUMALT=1;ODDS=3.46945e-18;PAIRED=0;PAIREDR=0.5;PAO=0;PQA=0;PQR=0;PRO=0;QA=362;QR=1442;RO=36;RPL=0;RPP=22.5536;RPPR=81.1833;RPR=9;RUN=1;SAF=7;SAP=9.04217;SAR=2;SRF=31;SRP=43.7857;SRR=5;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:26:21,5:21:841:5:198:-10.3703,0,-61.5298 0/1:9:5,4:5:200:4:164:-12.4406,0,-11.9324 0/0:10:10,0:10:401:0:0:0,-3.0103,-36.4475 dDocent_Contig_7570 195 . T C 284.266 . AB=0.407407;ABP=5.02092;AC=2;AF=0.333333;AN=6;AO=13;CIGAR=1X;DP=69;DPB=69;DPRA=0;EPP=31.2394;EPPR=124.613;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=519;QR=2237;RO=56;RPL=13;RPP=31.2394;RPPR=124.613;RPR=0;RUN=1;SAF=0;SAP=31.2394;SAR=13;SRF=0;SRP=124.613;SRR=56;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:42:40,2:40:1607:2:82:0,-4.86358,-137.082 0/1:6:4,2:4:151:2:79:-5.69145,0,-12.147 0/1:21:12,9:12:479:9:358:-26.2579,0,-37.1387 dDocent_Contig_7572 141 . T G 150.882 . AB=0.4;ABP=4.31318;AC=1;AF=0.166667;AN=6;AO=6;CIGAR=1X;DP=59;DPB=59;DPRA=0.681818;EPP=16.0391;EPPR=118.098;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=8.67362e-19;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=234;QR=1888;RO=53;RPL=0;RPP=16.0391;RPPR=118.098;RPR=6;RUN=1;SAF=0;SAP=16.0391;SAR=6;SRF=0;SRP=118.098;SRR=53;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:36:36,0:36:1276:0:0:0,-10.8371,-115.131 0/1:15:9,6:9:319:6:234:-16.9121,0,-24.5345 0/0:8:8,0:8:293:0:0:0,-2.40824,-26.7185 dDocent_Contig_7577 8 . T C 1140.51 . AB=0.356322;ABP=18.61;AC=2;AF=0.333333;AN=6;AO=31;CIGAR=2X3M1X4M;DP=87;DPB=86.3;DPRA=0;EPP=70.3259;EPPR=61.6401;GTI=0;LEN=1;MEANALT=2.66667;MQM=60;MQMR=60;NS=3;NUMALT=3;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=1228;QR=1053;RO=27;RPL=0;RPP=70.3259;RPPR=61.6401;RPR=31;RUN=1;SAF=31;SAP=70.3259;SAR=0;SRF=27;SRP=61.6401;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|1:41:14,20,0,7:14:547:20,0,7:791,0,284:-60.8763,0,-38.9398,-65.0907,-44.9604,-110.058,-41.6665,-21.5339,-86.6349,-84.5276 0|0:17:4,1,3,9:4:155:1,3,9:40,121,363:-28.719,-26.6283,-39.0568,-19.9488,-29.3826,-31.7747,0,-9.43022,-2.74681,-10.0167 0|1:29:9,10,4,6:9:351:10,4,6:397,163,228:-29.9788,0,-25.8435,-19.6057,-15.7704,-47.2537,-13.9998,-10.1642,-29.7677,-41.0432 dDocent_Contig_7578 59 . C A 418.546 . AB=0.235955;ABP=56.9067;AC=3;AF=0.5;AN=6;AO=21;CIGAR=1X;DP=89;DPB=89;DPRA=0;EPP=48.6112;EPPR=150.67;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=812;QR=2714;RO=68;RPL=21;RPP=48.6112;RPPR=150.67;RPR=0;RUN=1;SAF=21;SAP=48.6112;SAR=0;SRF=68;SRP=150.67;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:31:25,6:25:1001:6:238:-12.4616,0,-81.0546 0/1:23:16,7:16:628:7:267:-17.4677,0,-49.9276 0/1:35:27,8:27:1085:8:307:-17.4481,0,-87.4018 dDocent_Contig_7579 12 . G T 100.808 . AB=0.193548;ABP=28.2974;AC=2;AF=0.333333;AN=6;AO=6;CIGAR=1X;DP=43;DPB=43;DPRA=1.29167;EPP=4.45795;EPPR=83.3548;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=0.333333;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=243;QR=1462;RO=37;RPL=0;RPP=16.0391;RPPR=83.3548;RPR=6;RUN=1;SAF=4;SAP=4.45795;SAR=2;SRF=37;SRP=83.3548;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:21:19,2:19:740:2:82:-1.45805,0,-60.595 0/1:10:6,4:6:244:4:161:-11.865,0,-19.3285 0/0:12:12,0:12:478:0:0:0,-3.61236,-43.3687 dDocent_Contig_7580 26 . C A 254.65 . AB=0.0952381;ABP=32.8939;AC=0;AF=0;AN=6;AO=2;CIGAR=1X2M1X3M1X3M2X3M1X1M;DP=63;DPB=62.2778;DPRA=0;EPP=7.35324;EPPR=87.6977;GTI=0;LEN=1;MEANALT=5;MQM=50;MQMR=60;NS=3;NUMALT=5;ODDS=1.38778e-17;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=80;QR=1532;RO=39;RPL=0;RPP=7.35324;RPPR=87.6977;RPR=2;RUN=1;SAF=2;SAP=7.35324;SAR=0;SRF=39;SRP=87.6977;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|0:38:25,0,0,9,2,2:25:977:0,0,9,2,2:0,0,353,81,81:-21.4945,-29.0203,-109.339,-29.0203,-109.339,-109.339,0,-80.3105,-80.3105,-77.6012,-22.3395,-102.66,-102.66,-73.6304,-102.057,-22.3395,-102.66,-102.66,-73.6304,-95.9796,-102.057 0|0:4:3,0,1,0,0,0:3:118:0,1,0,0,0:0,40,0,0,0:-2.79156,-3.69465,-13.3965,0,-10.0998,-9.79877,-3.69465,-13.3965,-10.0998,-13.3965,-3.69465,-13.3965,-10.0998,-13.3965,-13.3965,-3.69465,-13.3965,-10.0998,-13.3965,-13.3965,-13.3965 0|0:21:11,2,2,2,0,3:11:437:2,2,2,0,3:80,81,77,0,121:-6.67877,-3.45916,-38.8577,-3.30127,-32.7778,-38.701,-3.663,-33.1369,-32.9801,-39.0599,-9.9901,-39.4597,-39.3031,-39.662,-45.9846,0,-29.4813,-29.3245,-29.6838,-36.0069,-35.1038 dDocent_Contig_7581 13 . C A 440.238 . AB=0.315789;ABP=19.8106;AC=3;AF=0.5;AN=6;AO=18;CIGAR=1X;DP=57;DPB=57;DPRA=0;EPP=42.0968;EPPR=87.6977;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=0.897436;PAO=0;PQA=0;PQR=0;PRO=0;QA=716;QR=1580;RO=39;RPL=0;RPP=42.0968;RPPR=87.6977;RPR=18;RUN=1;SAF=18;SAP=42.0968;SAR=0;SRF=39;SRP=87.6977;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:28:15,13:15:607:13:521:-38.8066,0,-46.5361 0/1:6:3,3:3:123:3:113:-8.72984,0,-9.65861 0/1:23:21,2:21:850:2:82:-0.855988,0,-69.8868 dDocent_Contig_7584 37 . C T 61.532 . AB=0.181818;ABP=22.3561;AC=1;AF=0.166667;AN=6;AO=4;CIGAR=1X;DP=87;DPB=87;DPRA=0.676923;EPP=11.6962;EPPR=183.243;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=0.5;PAIREDR=0.542169;PAO=0;PQA=0;PQR=0;PRO=0;QA=158;QR=3266;RO=83;RPL=0;RPP=11.6962;RPPR=183.243;RPR=4;RUN=1;SAF=4;SAP=11.6962;SAR=0;SRF=83;SRP=183.243;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:56:56,0:56:2193:0:0:0,-16.8577,-197.548 0/0:9:9,0:9:351:0:0:0,-2.70927,-31.9486 0/1:22:18,4:18:722:4:158:-7.9771,0,-58.6836 dDocent_Contig_7585 107 . N C 1565.63 . AB=0.372881;ABP=11.2913;AC=6;AF=1;AN=6;AO=22;CIGAR=1X3M;DP=59;DPB=59;DPRA=0;EPP=50.7827;EPPR=0;GTI=0;LEN=1;MEANALT=2;MQM=40.8636;MQMR=0;NS=3;NUMALT=2;ODDS=0;PAIRED=1;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=747;QR=0;RO=0;RPL=0;RPP=50.7827;RPPR=0;RPR=22;RUN=1;SAF=0;SAP=50.7827;SAR=22;SRF=0;SRP=0;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 1|1:44:0,24,20:0:0:24,20:800,677:-118.078,-53.5053,-46.2806,-64.9035,0,-58.8829 1|1:6:0,5,1:0:0:5,1:172,35:-17.0539,-3.07967,-1.57452,-14.3133,0,-14.0122 1|1:9:0,8,1:0:0:8,1:272,35:-25.1424,-3.07967,-0.671432,-22.401,0,-22.1 dDocent_Contig_7586 82 . T G 275.721 . AB=0.277778;ABP=26.1727;AC=3;AF=0.5;AN=6;AO=15;CIGAR=1X;DP=54;DPB=54;DPRA=0;EPP=35.5824;EPPR=87.6977;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=3.46945e-18;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=527;QR=1371;RO=39;RPL=15;RPP=35.5824;RPPR=87.6977;RPR=0;RUN=1;SAF=15;SAP=35.5824;SAR=0;SRF=39;SRP=87.6977;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:43:30,13:30:1053:13:461:-28.8795,0,-82.1348 0/1:4:3,1:3:113:1:33:-2.09501,0,-9.33485 0/1:7:6,1:6:205:1:33:-1.19192,0,-16.6778 dDocent_Contig_7587 13 . A T 40.5571 . AB=0.285714;ABP=5.80219;AC=1;AF=0.166667;AN=6;AO=2;CIGAR=1X;DP=25;DPB=25;DPRA=0.777778;EPP=7.35324;EPPR=52.9542;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=81;QR=923;RO=23;RPL=0;RPP=7.35324;RPPR=52.9542;RPR=2;RUN=1;SAF=2;SAP=7.35324;SAR=0;SRF=23;SRP=52.9542;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:7:5,2:5:202:2:81:-5.57852,0,-16.4543 0/0:6:6,0:6:240:0:0:0,-1.80618,-21.9751 0/0:12:12,0:12:481:0:0:0,-3.61236,-43.641 dDocent_Contig_7588 107 . N G 34.3643 . AB=0;ABP=0;AC=6;AF=1;AN=6;AO=5;CIGAR=1X;DP=5;DPB=5;DPRA=0;EPP=13.8677;EPPR=0;GTI=0;LEN=1;MEANALT=1;MQM=5.8;MQMR=0;NS=3;NUMALT=1;ODDS=1.69407e-21;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=163;QR=0;RO=0;RPL=0;RPP=13.8677;RPPR=0;RPR=5;RUN=1;SAF=0;SAP=13.8677;SAR=5;SRF=0;SRP=0;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 1/1:3:0,3:0:0:3:93:-1.58,-0.90309,0 1/1:1:0,1:0:0:1:35:-0.599591,-0.30103,0 1/1:1:0,1:0:0:1:35:-0.599591,-0.30103,0 dDocent_Contig_7589 136 . A C 121.306 . AB=0.5;ABP=3.0103;AC=1;AF=0.166667;AN=6;AO=4;CIGAR=1X1M1X1M1X;DP=32;DPB=32;DPRA=0.615385;EPP=11.6962;EPPR=50.7827;GTI=0;LEN=1;MEANALT=1;MQM=17.75;MQMR=60;NS=3;NUMALT=2;ODDS=0;PAIRED=0;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=129;QR=761;RO=22;RPL=0;RPP=11.6962;RPPR=50.7827;RPR=4;RUN=1;SAF=0;SAP=11.6962;SAR=4;SRF=0;SRP=50.7827;SRR=22;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|0:13:12,0,1:12:416:0,1:0,30:0,-3.61236,-37.4692,-0.913823,-35.0742,-34.7732 0|0:11:6,0,5:6:209:0,5:0,162:-11.588,-13.3942,-30.4041,0,-17.3449,-15.8397 0|1:8:4,4,0:4:136:4,0:129,0:-4.06408,0,-10.1675,-5.2682,-11.3716,-16.3824 dDocent_Contig_7590 10 . A G 1074.4 . AB=0.475;ABP=3.44459;AC=3;AF=0.5;AN=6;AO=38;CIGAR=1X;DP=80;DPB=80;DPRA=0;EPP=85.5263;EPPR=94.2121;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=1511;QR=1680;RO=42;RPL=0;RPP=85.5263;RPPR=94.2121;RPR=38;RUN=1;SAF=38;SAP=85.5263;SAR=0;SRF=42;SRP=94.2121;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:63:36,27:36:1438:27:1081:-78.6097,0,-110.707 0/1:2:1,1:1:38:1:41:-3.49251,0,-3.19521 0/1:15:5,10:5:204:10:389:-30.8466,0,-14.2286 dDocent_Contig_7591 13 . G T 403.96 . AB=0.4;ABP=6.48466;AC=3;AF=0.5;AN=6;AO=16;CIGAR=1X;DP=40;DPB=40;DPRA=0;EPP=37.7539;EPPR=55.1256;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=3.46945e-18;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=630;QR=920;RO=24;RPL=0;RPP=37.7539;RPPR=55.1256;RPR=16;RUN=1;SAF=16;SAP=37.7539;SAR=0;SRF=24;SRP=55.1256;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:19:11,8:11:421:8:313:-22.8137,0,-32.5215 0/1:6:1,5:1:38:5:196:-16.209,0,-1.99109 0/1:15:12,3:12:461:3:121:-6.76454,0,-37.3218 dDocent_Contig_7593 98 . N T 68.29 . AB=0;ABP=0;AC=2;AF=1;AN=2;AO=2;CIGAR=1M2I1M7X2I4X;DP=3;DPB=4;DPRA=0;EPP=7.35324;EPPR=0;GTI=0;LEN=1;MEANALT=2;MQM=60;MQMR=0;NS=1;NUMALT=1;ODDS=5.99146;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=76;QR=0;RO=0;RPL=0;RPP=7.35324;RPPR=0;RPR=2;RUN=1;SAF=2;SAP=7.35324;SAR=0;SRF=0;SRP=0;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL .:.:.:.:.:.:.:. .:.:.:.:.:.:.:. 1|1:3:0,2:0:0:2:76:-6.82792,-0.60206,0 dDocent_Contig_7594 8 . T C 1620.13 . AB=0.57;ABP=7.26639;AC=3;AF=0.5;AN=6;AO=57;CIGAR=1X;DP=100;DPB=100;DPRA=0;EPP=126.784;EPPR=96.3836;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=2185;QR=1668;RO=43;RPL=0;RPP=126.784;RPPR=96.3836;RPR=57;RUN=1;SAF=57;SAP=126.784;SAR=0;SRF=43;SRP=96.3836;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:55:22,33:22:849:33:1265:-97.5838,0,-60.1753 0/1:21:9,12:9:351:12:465:-35.8802,0,-25.6302 0/1:24:12,12:12:468:12:455:-34.0716,0,-35.2478 dDocent_Contig_7598 16 . A T 30.7079 . AB=0.222222;ABP=9.04217;AC=1;AF=0.25;AN=4;AO=2;CIGAR=1X;DP=16;DPB=16;DPRA=1.28571;EPP=7.35324;EPPR=33.4109;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=57.7857;NS=2;NUMALT=1;ODDS=0;PAIRED=0;PAIREDR=0.928571;PAO=0;PQA=0;PQR=0;PRO=0;QA=82;QR=553;RO=14;RPL=0;RPP=7.35324;RPPR=33.4109;RPR=2;RUN=1;SAF=2;SAP=7.35324;SAR=0;SRF=14;SRP=33.4109;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:7:7,0:7:273:0:0:0,-2.10721,-24.9332 0/1:9:7,2:7:280:2:82:-5.07041,0,-21.9949 ./.:.:.:.:.:.:.:. dDocent_Contig_7601 10 . A G 1142.83 . AB=0.454545;ABP=4.58955;AC=3;AF=0.5;AN=6;AO=40;CIGAR=1X;DP=88;DPB=88;DPRA=0;EPP=89.8692;EPPR=107.241;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=1614;QR=1927;RO=48;RPL=0;RPP=89.8692;RPPR=107.241;RPR=40;RUN=1;SAF=40;SAP=89.8692;SAR=0;SRF=48;SRP=107.241;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:53:24,29:24:968:29:1167:-89.3498,0,-71.4642 0/1:14:9,5:9:364:5:204:-14.5296,0,-28.91 0/1:21:15,6:15:595:6:243:-15.9263,0,-47.5617 dDocent_Contig_7603 40 . C T 248.887 . AB=0.255814;ABP=25.2805;AC=2;AF=0.333333;AN=6;AO=11;CIGAR=1X;DP=44;DPB=44;DPRA=21.5;EPP=26.8965;EPPR=74.6689;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=451;QR=1341;RO=33;RPL=0;RPP=26.8965;RPPR=74.6689;RPR=11;RUN=1;SAF=11;SAP=26.8965;SAR=0;SRF=33;SRP=74.6689;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:22:17,5:17:686:5:205:-12.2123,0,-55.4466 0/0:1:1,0:1:41:0:0:0,-0.30103,-4.09457 0/1:21:15,6:15:614:6:246:-16.1985,0,-49.2748 dDocent_Contig_7604 11 . C T 68.2827 . AB=0.190476;ABP=20.4855;AC=1;AF=0.25;AN=4;AO=4;CIGAR=1X;DP=58;DPB=58;DPRA=0.567568;EPP=11.6962;EPPR=120.27;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=2;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=164;QR=2163;RO=54;RPL=0;RPP=11.6962;RPPR=120.27;RPR=4;RUN=1;SAF=4;SAP=11.6962;SAR=0;SRF=54;SRP=120.27;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:37:37,0:37:1505:0:0:0,-11.1381,-135.686 ./.:.:.:.:.:.:.:. 0/1:21:17,4:17:658:4:164:-8.82827,0,-53.2191 dDocent_Contig_7606 24 . A G 135.806 . AB=0.129032;ABP=114.176;AC=2;AF=0.333333;AN=6;AO=12;CIGAR=1X3M;DP=99;DPB=99;DPRA=7.75;EPP=29.068;EPPR=185.414;GTI=0;LEN=1;MEANALT=1.5;MQM=60;MQMR=60;NS=3;NUMALT=2;ODDS=6.93889e-18;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=476;QR=3283;RO=84;RPL=0;RPP=29.068;RPPR=185.414;RPR=12;RUN=1;SAF=12;SAP=29.068;SAR=0;SRF=84;SRP=185.414;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|1:58:50,3,5:50:1966:3,5:121,192:-0.692431,-5.76246,-166.572,0,-151.72,-160.189 0|0:6:6,0,0:6:238:0,0:0,0:0,-1.80618,-21.7932,-1.80618,-21.7932,-21.7932 0|1:35:28,0,7:28:1079:0,7:0,284:-15.3974,-23.8262,-112.393,0,-88.9682,-86.861 dDocent_Contig_7608 18 . G C 50.6583 . AB=0.147059;ABP=39.7976;AC=2;AF=0.333333;AN=6;AO=5;CIGAR=2X;DP=41;DPB=41;DPRA=2.42857;EPP=3.44459;EPPR=81.1833;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=0.4;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=200;QR=1432;RO=36;RPL=0;RPP=13.8677;RPPR=81.1833;RPR=5;RUN=1;SAF=3;SAP=3.44459;SAR=2;SRF=36;SRP=81.1833;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|1:29:25,4:25:989:4:160:-6.05372,0,-80.5669 0|0:7:7,0:7:281:0:0:0,-2.10721,-25.6617 0|1:5:4,1:4:162:1:40:-2.49053,0,-13.4618 dDocent_Contig_7609 7 . T G 86.5583 . AB=0.266667;ABP=17.1973;AC=3;AF=0.5;AN=6;AO=8;CIGAR=1X;DP=30;DPB=30;DPRA=0;EPP=20.3821;EPPR=50.7827;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=243;QR=840;RO=22;RPL=0;RPP=20.3821;RPPR=50.7827;RPR=8;RUN=1;SAF=8;SAP=20.3821;SAR=0;SRF=22;SRP=50.7827;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:11:8,3:8:302:3:107:-6.67049,0,-24.2245 0/1:11:8,3:8:307:3:94:-5.45623,0,-24.6803 0/1:8:6,2:6:231:2:42:-1.5811,0,-18.7497 dDocent_Contig_7610 23 . G A 66.424 . AB=0.113636;ABP=117.111;AC=2;AF=0.333333;AN=6;AO=12;CIGAR=1X;DP=119;DPB=119;DPRA=0;EPP=29.068;EPPR=235.358;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=6.93889e-18;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=480;QR=4242;RO=107;RPL=0;RPP=29.068;RPPR=235.358;RPR=12;RUN=1;SAF=12;SAP=29.068;SAR=0;SRF=107;SRP=235.358;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:82:73,9:73:2894:9:357:-7.80808,0,-235.875 0/1:6:5,1:5:193:1:41:-2.28839,0,-15.9328 0/0:31:29,2:29:1155:2:82:0,-1.55225,-96.4478 dDocent_Contig_7611 42 . G T 235.213 . AB=0.608696;ABP=5.3706;AC=1;AF=0.166667;AN=6;AO=14;CIGAR=1X;DP=36;DPB=36;DPRA=3.53846;EPP=3.0103;EPPR=42.4916;GTI=0;LEN=1;MEANALT=1;MQM=31.7857;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=0;PAIREDR=0.909091;PAO=0;PQA=0;PQR=0;PRO=0;QA=546;QR=833;RO=22;RPL=0;RPP=33.4109;RPPR=50.7827;RPR=14;RUN=1;SAF=7;SAP=3.0103;SAR=7;SRF=21;SRP=42.4916;SRR=1;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:23:9,14:9:328:14:546:-25.0438,0,-22.9319 0/0:2:2,0:2:80:0:0:0,-0.60206,-7.59157 0/0:11:11,0:11:425:0:0:0,-3.31133,-38.5975 dDocent_Contig_7612 17 . A T 682.688 . AB=0.258621;ABP=61.7149;AC=3;AF=0.5;AN=6;AO=30;CIGAR=1X;DP=116;DPB=116;DPRA=0;EPP=68.1545;EPPR=189.757;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=1196;QR=3353;RO=86;RPL=0;RPP=68.1545;RPPR=189.757;RPR=30;RUN=1;SAF=30;SAP=68.1545;SAR=0;SRF=86;SRP=189.757;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:71:50,21:50:1964:21:841:-54.6317,0,-155.592 0/1:12:8,4:8:311:4:162:-11.3544,0,-24.7385 0/1:33:28,5:28:1078:5:193:-7.80555,0,-87.3701 dDocent_Contig_7613 197 . C A 173.904 . AB=0.225;ABP=29.2851;AC=1;AF=0.166667;AN=6;AO=10;CIGAR=1X;DP=58;DPB=58;DPRA=14;EPP=24.725;EPPR=98.736;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=0.979167;PAO=0;PQA=0;PQR=0;PRO=0;QA=379;QR=1811;RO=48;RPL=10;RPP=24.725;RPPR=107.241;RPR=0;RUN=1;SAF=0;SAP=24.725;SAR=10;SRF=1;SRP=98.736;SRR=47;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:40:31,9:31:1181:9:340:-18.9128,0,-94.5469 0/0:2:2,0:2:74:0:0:0,-0.60206,-7.02543 0/0:16:15,1:15:556:1:39:0,-0.919915,-46.4782 dDocent_Contig_7614 7 . T C 703.412 . AB=0.595238;ABP=6.31921;AC=3;AF=0.5;AN=6;AO=25;CIGAR=1X;DP=42;DPB=42;DPRA=0;EPP=57.2971;EPPR=39.9253;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=971;QR=639;RO=17;RPL=0;RPP=57.2971;RPPR=39.9253;RPR=25;RUN=1;SAF=25;SAP=57.2971;SAR=0;SRF=17;SRP=39.9253;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:27:7,20:7:272:20:778:-62.2203,0,-16.7194 0/1:4:3,1:3:112:1:37:-2.49371,0,-9.24178 0/1:11:7,4:7:255:4:156:-11.106,0,-19.9853 dDocent_Contig_7616 112 . C A 227.824 . AB=0.276596;ABP=23.3852;AC=2;AF=0.333333;AN=6;AO=13;CIGAR=1X;DP=82;DPB=82;DPRA=0.671429;EPP=31.2394;EPPR=152.842;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=442;QR=2351;RO=69;RPL=0;RPP=31.2394;RPPR=152.842;RPR=13;RUN=1;SAF=0;SAP=31.2394;SAR=13;SRF=0;SRP=152.842;SRR=69;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:41:30,11:30:1034:11:372:-21.4639,0,-81.0289 0/1:6:4,2:4:136:2:70:-4.84122,0,-10.7697 0/0:35:35,0:35:1181:0:0:0,-10.536,-106.591 dDocent_Contig_7617 7 . T C 24526 . AB=0.743902;ABP=87.7507;AC=5;AF=0.833333;AN=6;AO=756;CIGAR=2M1X4M;DP=864;DPB=870.286;DPRA=0;EPP=1635.97;EPPR=79.0118;GTI=0;LEN=1;MEANALT=8;MQM=55.6865;MQMR=60;NS=3;NUMALT=2;ODDS=0;PAIRED=0.56746;PAIREDR=0.857143;PAO=0;PQA=0;PQR=0;PRO=0;QA=28680;QR=1348;RO=35;RPL=0;RPP=1644.64;RPPR=79.0118;RPR=756;RUN=1;SAF=755;SAP=1635.97;SAR=1;SRF=35;SRP=79.0118;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|1:164:12,23,122:12:467:23,122:890,4676:-387.025,-343.566,-375.025,-8.61784,0,-10.3052 1|1:463:7,7,433:7:267:7,433:271,16397:-1443.3,-1430.53,-1450.32,-108.433,-115.49,0 1|1:237:16,7,201:16:614:7,201:272,7607:-623.796,-617.68,-665.973,-10.0725,-49.5996,0 dDocent_Contig_7618 19 . G T 110.16 . AB=0.25;ABP=16.0391;AC=2;AF=0.5;AN=4;AO=6;CIGAR=1X;DP=24;DPB=24;DPRA=0;EPP=16.0391;EPPR=42.0968;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=2;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=235;QR=713;RO=18;RPL=0;RPP=16.0391;RPPR=42.0968;RPR=6;RUN=1;SAF=6;SAP=16.0391;SAR=0;SRF=18;SRP=42.0968;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:15:13,2:13:523:2:78:-2.88802,0,-42.8997 ./.:.:.:.:.:.:.:. 0/1:9:5,4:5:190:4:157:-11.7997,0,-14.7539 dDocent_Contig_7619 36 . A C 160.162 . AB=0.222222;ABP=15.074;AC=1;AF=0.166667;AN=6;AO=4;CIGAR=6M1X2M1X2M;DP=37;DPB=34.5;DPRA=1.63636;EPP=11.6962;EPPR=57.2971;GTI=0;LEN=1;MEANALT=3;MQM=60;MQMR=60;NS=3;NUMALT=4;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=156;QR=977;RO=25;RPL=0;RPP=11.6962;RPPR=57.2971;RPR=4;RUN=1;SAF=4;SAP=11.6962;SAR=0;SRF=25;SRP=57.2971;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|1:18:10,2,4,0,2:10:390:2,4,0,2:81,156,0,82:-9.80471,-6.17942,-37.6303,0,-25.4102,-30.8415,-12.815,-38.2324,-32.0456,-44.8676,-6.04293,-31.4618,-25.2749,-38.0975,-37.4954 0|0:8:4,0,0,4,0:4:160:0,0,4,0:0,0,161,0:-9.73435,-10.9385,-24.1545,-10.9385,-24.1545,-24.1545,0,-13.5799,-13.5799,-12.3758,-10.9385,-24.1545,-24.1545,-13.5799,-24.1545 0|0:11:11,0,0,0,0:11:427:0,0,0,0:0,0,0,0:0,-3.31133,-38.7829,-3.31133,-38.7829,-38.7829,-3.31133,-38.7829,-38.7829,-38.7829,-3.31133,-38.7829,-38.7829,-38.7829,-38.7829 dDocent_Contig_7620 16 . G A 47.4676 . AB=0;ABP=0;AC=0;AF=0;AN=6;AO=2;CIGAR=1X1M1X;DP=61;DPB=61;DPRA=0.607143;EPP=7.35324;EPPR=118.098;GTI=0;LEN=1;MEANALT=1;MQM=26;MQMR=60;NS=3;NUMALT=2;ODDS=0;PAIRED=0;PAIREDR=0.981132;PAO=0;PQA=0;PQR=0;PRO=0;QA=77;QR=2087;RO=53;RPL=0;RPP=7.35324;RPPR=118.098;RPR=2;RUN=1;SAF=2;SAP=7.35324;SAR=0;SRF=53;SRP=118.098;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|0:28:26,0,2:26:1022:0,2:0,79:0,-7.82678,-91.8855,-0.931595,-85.3848,-84.7827 0|0:17:15,2,0:15:597:2,0:77,0:0,-0.229552,-49.18,-4.51545,-49.7821,-53.7942 0|0:16:12,0,3:12:468:0,3:0,123:-6.56964,-10.182,-48.6372,0,-38.481,-37.5779 dDocent_Contig_7621 37 . A T 186.274 . AB=0.333333;ABP=8.80089;AC=2;AF=0.333333;AN=6;AO=10;CIGAR=1X;DP=65;DPB=65;DPRA=0;EPP=24.725;EPPR=122.441;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=59.8909;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=0.945455;PAO=0;PQA=0;PQR=0;PRO=0;QA=398;QR=2167;RO=55;RPL=0;RPP=24.725;RPPR=122.441;RPR=10;RUN=1;SAF=10;SAP=24.725;SAR=0;SRF=55;SRP=122.441;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:41:39,2:39:1551:2:80:0,-4.75065,-132.229 0/1:6:4,2:4:160:2:77:-5.50296,0,-12.9776 0/1:18:12,6:12:456:6:241:-16.6473,0,-35.9561 dDocent_Contig_7622 107 . N T 251.756 . AB=0;ABP=0;AC=4;AF=1;AN=4;AO=8;CIGAR=1X;DP=8;DPB=8;DPRA=0;EPP=20.3821;EPPR=0;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=0;NS=2;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=269;QR=0;RO=0;RPL=0;RPP=20.3821;RPPR=0;RPR=8;RUN=1;SAF=0;SAP=20.3821;SAR=8;SRF=0;SRP=0;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 1/1:4:0,4:0:0:4:130:-12.0216,-1.20412,0 1/1:4:0,4:0:0:4:139:-12.8527,-1.20412,0 ./.:.:.:.:.:.:.:. dDocent_Contig_7623 12 . T C 844.289 . AB=0.181818;ABP=177.123;AC=3;AF=0.5;AN=6;AO=36;CIGAR=1X3M;DP=198;DPB=198;DPRA=0;EPP=81.1833;EPPR=268.513;GTI=0;LEN=1;MEANALT=3.66667;MQM=58.9444;MQMR=60;NS=3;NUMALT=2;ODDS=0;PAIRED=0.972222;PAIREDR=0.940299;PAO=0;PQA=0;PQR=0;PRO=0;QA=1426;QR=5288;RO=134;RPL=0;RPP=81.1833;RPPR=293.988;RPR=36;RUN=1;SAF=36;SAP=81.1833;SAR=0;SRF=131;SRP=268.513;SRR=3;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|1:94:68,4,18:68:2697:4,18:163,707:-37.4142,-44.4326,-265.236,0,-208.573,-216.602 0|1:46:27,11,7:27:1049:11,7:437,277:-27.8529,0,-82.8714,-13.1835,-63.3843,-97.2576 0|1:58:39,7,11:39:1542:7,11:278,442:-24.6847,-13.5416,-138.324,0,-104.007,-123.581 dDocent_Contig_7624 44 . G A 1129.02 . AB=0.15;ABP=130.693;AC=2;AF=0.333333;AN=6;AO=18;CIGAR=4M1X;DP=120;DPB=131.6;DPRA=0;EPP=42.0968;EPPR=126.784;GTI=0;LEN=1;MEANALT=2.66667;MQM=60;MQMR=60;NS=3;NUMALT=2;ODDS=0;PAIRED=0.611111;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=704;QR=2150;RO=57;RPL=0;RPP=42.0968;RPPR=126.784;RPR=18;RUN=1;SAF=18;SAP=42.0968;SAR=0;SRF=57;SRP=126.784;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|0:85:37,36,9:37:1388:36,9:1306,354:-95.4765,0,-102.838,-77.4902,-84.5534,-188.472 0|1:9:3,3,3:3:114:3,3:112,116:-8.63089,-0.370047,-8.81179,0,-0.184186,-8.44835 0|1:26:17,3,6:17:648:3,6:87,234:-14.1836,-12.4102,-64.656,0,-46.3221,-51.4265 dDocent_Contig_7625 43 . C A 154.767 . AB=0.222222;ABP=9.04217;AC=3;AF=0.5;AN=6;AO=6;CIGAR=1X;DP=18;DPB=18;DPRA=1.3;EPP=8.80089;EPPR=29.068;GTI=0;LEN=1;MEANALT=1;MQM=50;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=0;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=213;QR=484;RO=12;RPL=1;RPP=8.80089;RPPR=29.068;RPR=5;RUN=1;SAF=6;SAP=16.0391;SAR=0;SRF=12;SRP=29.068;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:9:7,2:7:285:2:69:-3.83083,0,-23.3151 1/1:4:0,4:0:0:4:144:-13.1664,-1.20412,0 0/0:5:5,0:5:199:0:0:0,-1.50515,-18.2874 dDocent_Contig_7626 11 . A G 39.0264 . AB=0.129032;ABP=40.0654;AC=1;AF=0.166667;AN=6;AO=4;CIGAR=1X;DP=90;DPB=90;DPRA=1.05085;EPP=11.6962;EPPR=189.757;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=163;QR=3430;RO=86;RPL=0;RPP=11.6962;RPPR=189.757;RPR=4;RUN=1;SAF=4;SAP=11.6962;SAR=0;SRF=86;SRP=189.757;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:42:42,0:42:1680:0:0:0,-12.6433,-151.427 0/1:31:27,4:27:1076:4:163:-5.7265,0,-87.8004 0/0:17:17,0:17:674:0:0:0,-5.11751,-60.988 dDocent_Contig_7627 111 . C T 165.695 . AB=0.333333;ABP=9.52472;AC=2;AF=0.5;AN=4;AO=9;CIGAR=1X;DP=27;DPB=27;DPRA=0;EPP=22.5536;EPPR=42.0968;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=2;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=308;QR=628;RO=18;RPL=0;RPP=22.5536;RPPR=42.0968;RPR=9;RUN=1;SAF=0;SAP=22.5536;SAR=9;SRF=0;SRP=42.0968;SRR=18;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:16:10,6:10:350:6:204:-13.8768,0,-27.021 ./.:.:.:.:.:.:.:. 0/1:11:8,3:8:278:3:104:-6.39169,0,-22.0466 dDocent_Contig_7629 27 . A G 69.8627 . AB=0.147059;ABP=39.7976;AC=1;AF=0.166667;AN=6;AO=6;CIGAR=1X;DP=75;DPB=75;DPRA=1.0625;EPP=16.0391;EPPR=152.842;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=0.666667;PAIREDR=0.681159;PAO=0;PQA=0;PQR=0;PRO=0;QA=245;QR=2744;RO=69;RPL=0;RPP=16.0391;RPPR=152.842;RPR=6;RUN=1;SAF=6;SAP=16.0391;SAR=0;SRF=69;SRP=152.842;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:34:29,5:29:1157:5:204:-8.50901,0,-94.1774 0/0:17:16,1:16:638:1:41:0,-1.02294,-53.6616 0/0:24:24,0:24:949:0:0:0,-7.22472,-85.7095 dDocent_Contig_7631 15 . C T 706.023 . AB=0.228916;ABP=55.989;AC=1;AF=0.166667;AN=6;AO=19;CIGAR=2X1M;DP=83;DPB=83;DPRA=0;EPP=44.2683;EPPR=83.3548;GTI=0;LEN=1;MEANALT=2;MQM=60;MQMR=60;NS=3;NUMALT=2;ODDS=0;PAIRED=1;PAIREDR=0.486486;PAO=0;PQA=0;PQR=0;PRO=0;QA=754;QR=1457;RO=37;RPL=0;RPP=44.2683;RPPR=83.3548;RPR=19;RUN=1;SAF=19;SAP=44.2683;SAR=0;SRF=37;SRP=83.3548;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|0:54:18,21,15:18:713:21,15:826,591:-62.5235,0,-52.3605,-19.3207,-10.062,-73.4875 0|1:8:4,2,2:4:164:2,2:81,82:-5.56651,-0.0939437,-13.0282,0,-6.8621,-12.9376 0|0:21:15,4,2:15:580:4,2:152,81:-7.93185,0,-46.4086,-5.75986,-40.9315,-52.7919 dDocent_Contig_7632 50 . T C 550.51 . AB=0.540541;ABP=3.5385;AC=3;AF=0.5;AN=6;AO=20;CIGAR=1X;DP=37;DPB=37;DPRA=0;EPP=46.4397;EPPR=39.9253;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=784;QR=688;RO=17;RPL=20;RPP=46.4397;RPPR=39.9253;RPR=0;RUN=1;SAF=20;SAP=46.4397;SAR=0;SRF=17;SRP=39.9253;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:14:6,8:6:246:8:314:-24.4058,0,-18.3057 0/1:5:4,1:4:162:1:40:-2.49053,0,-13.4618 0/1:18:7,11:7:280:11:430:-33.6331,0,-20.1521 dDocent_Contig_7633 18 . T C 296.446 . AB=0.190476;ABP=72.911;AC=2;AF=0.333333;AN=6;AO=19;CIGAR=1X;DP=125;DPB=125;DPRA=0;EPP=44.2683;EPPR=233.186;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=759;QR=4221;RO=106;RPL=0;RPP=44.2683;RPPR=233.186;RPR=19;RUN=1;SAF=19;SAP=44.2683;SAR=0;SRF=106;SRP=233.186;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:76:61,15:61:2439:15:596:-31.1021,0,-196.773 0/1:8:7,1:7:285:1:41:-1.68633,0,-23.616 0/0:41:38,3:38:1497:3:122:0,-0.969737,-123.609 dDocent_Contig_7634 108 . C T 103.12 . AB=0.26087;ABP=14.4341;AC=1;AF=0.166667;AN=6;AO=6;CIGAR=1X;DP=91;DPB=91;DPRA=0.676471;EPP=16.0391;EPPR=187.585;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=208;QR=2767;RO=85;RPL=0;RPP=16.0391;RPPR=187.585;RPR=6;RUN=1;SAF=0;SAP=16.0391;SAR=6;SRF=0;SRP=187.585;SRR=85;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:47:47,0:47:1531:0:0:0,-14.1484,-138.071 0/1:23:17,6:17:553:6:208:-12.136,0,-43.157 0/0:21:21,0:21:683:0:0:0,-6.32163,-61.7765 dDocent_Contig_7635 10 . A T 52.417 . AB=0.214286;ABP=12.937;AC=1;AF=0.166667;AN=6;AO=3;CIGAR=1X;DP=51;DPB=51;DPRA=0.756757;EPP=9.52472;EPPR=107.241;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=0.916667;PAO=0;PQA=0;PQR=0;PRO=0;QA=121;QR=1913;RO=48;RPL=0;RPP=9.52472;RPPR=107.241;RPR=3;RUN=1;SAF=3;SAP=9.52472;SAR=0;SRF=48;SRP=107.241;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:32:32,0:32:1278:0:0:0,-9.63296,-115.288 0/0:5:5,0:5:198:0:0:0,-1.50515,-18.197 0/1:14:11,3:11:437:3:121:-7.06557,0,-35.4698 dDocent_Contig_7637 112 . A T 269.998 . AB=0.0769231;ABP=63.6445;AC=3;AF=0.5;AN=6;AO=3;CIGAR=1X1M1X3M;DP=95;DPB=95;DPRA=0;EPP=9.52472;EPPR=102.898;GTI=0;LEN=1;MEANALT=4;MQM=6;MQMR=34.5;NS=3;NUMALT=3;ODDS=0;PAIRED=0;PAIREDR=0.413043;PAO=0;PQA=0;PQR=0;PRO=0;QA=18;QR=1594;RO=46;RPL=0;RPP=9.52472;RPPR=102.898;RPR=3;RUN=1;SAF=0;SAP=9.52472;SAR=3;SRF=0;SRP=102.898;SRR=46;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|1:42:23,6,0,10:23:797:6,0,10:207,0,147:-5.49011,0,-44.2506,-12.4138,-46.0568,-58.4303,-4.84248,-38.4752,-50.8453,-47.835 0|1:14:6,2,0,6:6:206:2,0,6:67,0,82:-2.97955,0,-11.0549,-4.78573,-11.657,-16.4124,-0.927524,-7.72714,-12.4777,-10.6716 0|1:39:17,13,3,5:17:591:13,3,5:428,18,68:-24.0218,0,-23.8406,-29.1037,-27.7098,-55.8624,-25.863,-24.465,-53.4802,-52.0186 dDocent_Contig_7639 122 . A G 82.8367 . AB=0.214286;ABP=22.8638;AC=2;AF=0.333333;AN=6;AO=6;CIGAR=1X;DP=65;DPB=65;DPRA=0.378378;EPP=16.0391;EPPR=131.127;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=207;QR=2006;RO=59;RPL=0;RPP=16.0391;RPPR=131.127;RPR=6;RUN=1;SAF=0;SAP=16.0391;SAR=6;SRF=0;SRP=131.127;SRR=59;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:37:37,0:37:1243:0:0:0,-11.1381,-112.167 0/1:9:8,1:8:277:1:35:-0.789359,0,-22.5576 0/1:19:14,5:14:486:5:172:-10.0988,0,-38.3512 dDocent_Contig_7640 10 . A C 425.792 . AB=0.314815;ABP=19.0953;AC=2;AF=0.5;AN=4;AO=17;CIGAR=1X;DP=54;DPB=54;DPRA=0;EPP=39.9253;EPPR=83.3548;GTI=0;LEN=1;MEANALT=1;MQM=53;MQMR=60;NS=2;NUMALT=1;ODDS=0;PAIRED=0;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=690;QR=1483;RO=37;RPL=0;RPP=39.9253;RPPR=83.3548;RPR=17;RUN=1;SAF=17;SAP=39.9253;SAR=0;SRF=37;SRP=83.3548;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:32:18,14:18:721:14:567:-41.4948,0,-55.5806 ./.:.:.:.:.:.:.:. 0/1:22:19,3:19:762:3:123:-4.78294,0,-62.277 dDocent_Contig_7641 18 . C T 58.3689 . AB=0.2;ABP=18.6449;AC=1;AF=0.166667;AN=6;AO=4;CIGAR=1X;DP=69;DPB=69;DPRA=0.816327;EPP=11.6962;EPPR=141.985;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=148;QR=2571;RO=64;RPL=0;RPP=11.6962;RPPR=141.985;RPR=4;RUN=1;SAF=4;SAP=11.6962;SAR=0;SRF=64;SRP=141.985;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:47:46,0:46:1853:0:0:0,-13.8474,-166.662 0/0:2:2,0:2:73:0:0:0,-0.60206,-6.93007 0/1:20:16,4:16:645:4:148:-7.66044,0,-52.3615 dDocent_Contig_7642 15 . T A 102.836 . AB=0.129412;ABP=104.405;AC=2;AF=0.333333;AN=6;AO=18;CIGAR=1X;DP=230;DPB=230;DPRA=0;EPP=42.0968;EPPR=463.362;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=700;QR=8535;RO=212;RPL=0;RPP=42.0968;RPPR=463.362;RPR=18;RUN=1;SAF=18;SAP=42.0968;SAR=0;SRF=212;SRP=463.362;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:145:138,7:138:5561:7:271:0,-18.8985,-475.536 0/1:12:8,4:8:320:4:161:-11.2631,0,-25.5537 0/1:73:66,7:66:2654:7:268:-2.4998,0,-216.996 dDocent_Contig_7643 30 . T C 972.776 . AB=0.404494;ABP=10.0615;AC=3;AF=0.5;AN=6;AO=36;CIGAR=1X;DP=89;DPB=89;DPRA=0;EPP=81.1833;EPPR=115.927;GTI=0;LEN=1;MEANALT=1.33333;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=1427;QR=2097;RO=52;RPL=0;RPP=81.1833;RPPR=115.927;RPR=36;RUN=1;SAF=36;SAP=81.1833;SAR=0;SRF=52;SRP=115.927;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:30:27,3:27:1090:3:120:-2.15641,0,-89.3551 0/1:29:17,12:17:685:12:467:-33.6455,0,-53.2498 0/1:30:8,21:8:322:21:840:-66.9077,0,-20.3336 dDocent_Contig_7646 55 . T C 177.701 . AB=0.225;ABP=29.2851;AC=2;AF=0.333333;AN=6;AO=9;CIGAR=1X;DP=44;DPB=44;DPRA=5;EPP=22.5536;EPPR=79.0118;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=0.888889;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=362;QR=1396;RO=35;RPL=9;RPP=22.5536;RPPR=79.0118;RPR=0;RUN=1;SAF=9;SAP=22.5536;SAR=0;SRF=35;SRP=79.0118;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:29:22,7:22:876:7:285:-17.2945,0,-70.4183 0/0:4:4,0:4:162:0:0:0,-1.20412,-14.967 0/1:11:9,2:9:358:2:77:-3.99687,0,-29.2709 dDocent_Contig_7648 19 . T G 151.988 . AB=0.241379;ABP=19.8579;AC=1;AF=0.166667;AN=6;AO=8;CIGAR=1X;DP=115;DPB=115;DPRA=3.09375;EPP=20.3821;EPPR=235.358;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=0.875;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=319;QR=4304;RO=107;RPL=0;RPP=20.3821;RPPR=235.358;RPR=8;RUN=1;SAF=8;SAP=20.3821;SAR=0;SRF=107;SRP=235.358;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:70:69,1:69:2787:1:37:0,-17.3743,-247.232 0/0:16:16,0:16:645:0:0:0,-4.81648,-58.3823 0/1:29:22,7:22:872:7:282:-17.0227,0,-70.0585 dDocent_Contig_7649 49 . A G 114.113 . AB=0.263158;ABP=12.2676;AC=1;AF=0.166667;AN=6;AO=5;CIGAR=1X;DP=34;DPB=34;DPRA=2.53333;EPP=13.8677;EPPR=65.983;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=203;QR=1109;RO=29;RPL=0;RPP=13.8677;RPPR=65.983;RPR=5;RUN=1;SAF=5;SAP=13.8677;SAR=0;SRF=29;SRP=65.983;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:19:14,5:14:546:5:203:-12.9335,0,-43.7584 0/0:1:1,0:1:40:0:0:0,-0.30103,-3.99568 0/0:14:14,0:14:523:0:0:0,-4.21442,-47.3997 dDocent_Contig_7651 28 . G A 39.2145 . AB=0.15;ABP=24.2907;AC=1;AF=0.166667;AN=6;AO=3;CIGAR=1X;DP=34;DPB=34;DPRA=2.85714;EPP=9.52472;EPPR=70.3259;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=123;QR=1235;RO=31;RPL=0;RPP=9.52472;RPPR=70.3259;RPR=3;RUN=1;SAF=3;SAP=9.52472;SAR=0;SRF=31;SRP=70.3259;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:20:17,3:17:674:3:123:-5.44419,0,-54.9673 0/0:4:4,0:4:162:0:0:0,-1.20412,-14.967 0/0:10:10,0:10:399:0:0:0,-3.0103,-36.267 dDocent_Contig_7653 17 . C T 294.062 . AB=0.282609;ABP=21.8927;AC=3;AF=0.5;AN=6;AO=13;CIGAR=1X;DP=46;DPB=46;DPRA=0;EPP=31.2394;EPPR=58.3499;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=59.5152;NS=3;NUMALT=1;ODDS=0;PAIRED=0;PAIREDR=0.757576;PAO=0;PQA=0;PQR=0;PRO=0;QA=529;QR=1327;RO=33;RPL=0;RPP=31.2394;RPPR=74.6689;RPR=13;RUN=1;SAF=13;SAP=31.2394;SAR=0;SRF=31;SRP=58.3499;SRR=2;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:24:17,7:17:677:7:283:-18.6183,0,-53.9794 0/1:8:4,4:4:161:4:164:-12.7417,0,-12.4667 0/1:14:12,2:12:489:2:82:-3.56526,0,-40.1469 dDocent_Contig_7655 107 . N G 227.557 . AB=0;ABP=0;AC=2;AF=1;AN=2;AO=7;CIGAR=1X;DP=7;DPB=7;DPRA=0;EPP=18.2106;EPPR=0;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=0;NS=1;NUMALT=1;ODDS=9.4572;PAIRED=1;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=249;QR=0;RO=0;RPL=0;RPP=18.2106;RPPR=0;RPR=7;RUN=1;SAF=0;SAP=18.2106;SAR=7;SRF=0;SRP=0;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 1/1:7:0,7:0:0:7:249:-22.7556,-2.10721,0 ./.:.:.:.:.:.:.:. ./.:.:.:.:.:.:.:. dDocent_Contig_7656 14 . A G 81.2323 . AB=0.307692;ABP=7.18621;AC=2;AF=0.333333;AN=6;AO=4;CIGAR=1X;DP=20;DPB=20;DPRA=0.928571;EPP=11.6962;EPPR=37.7539;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=164;QR=627;RO=16;RPL=0;RPP=11.6962;RPPR=37.7539;RPR=4;RUN=1;SAF=4;SAP=11.6962;SAR=0;SRF=16;SRP=37.7539;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:9:7,2:7:269:2:82:-5.07041,0,-21.8608 0/1:4:2,2:2:81:2:82:-6.57556,0,-6.48161 0/0:7:7,0:7:277:0:0:0,-2.10721,-25.2985 dDocent_Contig_7657 46 . T A 63.6221 . AB=0.3;ABP=6.48466;AC=1;AF=0.25;AN=4;AO=3;CIGAR=1X;DP=17;DPB=17;DPRA=1.42857;EPP=9.52472;EPPR=33.4109;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=2;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=122;QR=567;RO=14;RPL=0;RPP=9.52472;RPPR=33.4109;RPR=3;RUN=1;SAF=3;SAP=9.52472;SAR=0;SRF=14;SRP=33.4109;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:7:7,0:7:283:0:0:0,-2.10721,-25.8434 ./.:.:.:.:.:.:.:. 0/1:10:7,3:7:284:3:122:-8.36219,0,-22.9235 dDocent_Contig_7658 32 . C G 31.7092 . AB=0.25;ABP=7.35324;AC=1;AF=0.166667;AN=6;AO=2;CIGAR=1X;DP=42;DPB=42;DPRA=0.470588;EPP=7.35324;EPPR=89.8692;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=58.95;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=78;QR=1590;RO=40;RPL=0;RPP=7.35324;RPPR=89.8692;RPR=2;RUN=1;SAF=2;SAP=7.35324;SAR=0;SRF=40;SRP=89.8692;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:17:17,0:17:672:0:0:0,-5.11751,-60.8083 0/0:17:17,0:17:675:0:0:0,-5.11751,-61.0819 0/1:8:6,2:6:243:2:78:-4.99454,0,-17.8248 dDocent_Contig_7659 52 . A G 853.475 . AB=0.708333;ABP=21.1059;AC=2;AF=0.5;AN=4;AO=34;CIGAR=1X;DP=48;DPB=48;DPRA=0;EPP=76.8404;EPPR=33.4109;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=2;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=1143;QR=442;RO=14;RPL=34;RPP=76.8404;RPPR=33.4109;RPR=0;RUN=1;SAF=34;SAP=76.8404;SAR=0;SRF=14;SRP=33.4109;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:33:8,25:8:267:25:853:-67.1483,0,-14.4219 ./.:.:.:.:.:.:.:. 0/1:15:6,9:6:175:9:290:-21.8981,0,-11.5213 dDocent_Contig_7660 52 . A C 60.8838 . AB=0.222222;ABP=15.074;AC=1;AF=0.166667;AN=6;AO=4;CIGAR=1X;DP=34;DPB=34;DPRA=2.25;EPP=11.6962;EPPR=68.1545;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=141;QR=1173;RO=30;RPL=4;RPP=11.6962;RPPR=68.1545;RPR=0;RUN=1;SAF=4;SAP=11.6962;SAR=0;SRF=30;SRP=68.1545;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:18:14,4:14:536:4:141:-7.6109,0,-43.1504 0/0:2:2,0:2:76:0:0:0,-0.60206,-7.21354 0/0:14:14,0:14:561:0:0:0,-4.21442,-50.8324 dDocent_Contig_7661 109 . C A 33.9578 . AB=0.2;ABP=14.7363;AC=1;AF=0.25;AN=4;AO=3;CIGAR=1X;DP=27;DPB=27;DPRA=1.25;EPP=9.52472;EPPR=55.1256;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=2;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=0.791667;PAO=0;PQA=0;PQR=0;PRO=0;QA=103;QR=815;RO=24;RPL=0;RPP=9.52472;RPPR=55.1256;RPR=3;RUN=1;SAF=0;SAP=9.52472;SAR=3;SRF=0;SRP=55.1256;SRR=24;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:15:12,3:12:414:3:103:-5.09457,0,-33.076 ./.:.:.:.:.:.:.:. 0/0:12:12,0:12:401:0:0:0,-3.61236,-36.4117 dDocent_Contig_7662 10 . T G 466.921 . AB=0.12766;ABP=59.6072;AC=0;AF=0;AN=6;AO=6;CIGAR=1M1D1X4M1X9M1X4M;DP=54;DPB=54.4545;DPRA=3.35714;EPP=16.0391;EPPR=59.4686;GTI=0;LEN=1;MEANALT=2.5;MQM=18.1667;MQMR=60;NS=3;NUMALT=3;ODDS=0;PAIRED=0;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=109;QR=1022;RO=26;RPL=0;RPP=16.0391;RPPR=59.4686;RPR=6;RUN=1;SAF=6;SAP=16.0391;SAR=0;SRF=26;SRP=59.4686;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|0:17:4,3,3,7:4:158:3,3,7:110,58,238:-18.1344,-10.3301,-22.4595,-15.8683,-19.8919,-27.9804,0,-4.04225,-9.60655,-10.9464 0|0:7:7,0,0,0:7:276:0,0,0:0,0,0:0,-2.10721,-25.2097,-2.10721,-25.2097,-25.2097,-2.10721,-25.2097,-25.2097,-25.2097 0|0:30:15,0,3,12:15:588:0,3,12:0,51,445:-32.0805,-36.596,-84.9824,-33.7561,-82.1207,-81.2176,0,-48.5623,-45.7183,-44.9499 dDocent_Contig_7665 18 . C T 1406.47 . AB=0.5;ABP=3.0103;AC=4;AF=0.666667;AN=6;AO=49;CIGAR=1X;DP=71;DPB=71;DPRA=0;EPP=109.412;EPPR=50.7827;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=1810;QR=887;RO=22;RPL=0;RPP=109.412;RPPR=50.7827;RPR=49;RUN=1;SAF=49;SAP=109.412;SAR=0;SRF=22;SRP=50.7827;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 1/1:31:2,29:2:81:29:1078:-89.6273,-1.6462,0 0/1:13:11,2:11:442:2:74:-3.11238,0,-36.2215 0/1:27:9,18:9:364:18:658:-51.4187,0,-24.9972 dDocent_Contig_7666 122 . C T 51.4797 . AB=0.3;ABP=6.48466;AC=1;AF=0.166667;AN=6;AO=3;CIGAR=1X;DP=30;DPB=30;DPRA=1;EPP=9.52472;EPPR=61.6401;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=107;QR=934;RO=27;RPL=0;RPP=9.52472;RPPR=61.6401;RPR=3;RUN=1;SAF=0;SAP=9.52472;SAR=3;SRF=0;SRP=61.6401;SRR=27;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:9:9,0:9:313:0:0:0,-2.70927,-28.5071 0/1:10:7,3:7:244:3:107:-6.97187,0,-19.2898 0/0:11:11,0:11:377:0:0:0,-3.31133,-34.2605 dDocent_Contig_7667 8 . G T 66.6291 . AB=0.139535;ABP=51.5402;AC=1;AF=0.166667;AN=6;AO=8;CIGAR=1X;DP=148;DPB=148;DPRA=0;EPP=20.3821;EPPR=307.016;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=59.5714;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=0.885714;PAO=0;PQA=0;PQR=0;PRO=0;QA=310;QR=5340;RO=140;RPL=0;RPP=20.3821;RPPR=307.016;RPR=8;RUN=1;SAF=8;SAP=20.3821;SAR=0;SRF=140;SRP=307.016;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:77:76,1:76:2917:1:39:0,-19.2827,-258.738 0/0:28:27,1:27:1030:1:37:0,-4.73101,-89.3119 0/1:43:37,6:37:1393:6:234:-8.48681,0,-111.686 dDocent_Contig_7668 23 . T C 65.0397 . AB=0;ABP=0;AC=0;AF=0;AN=6;AO=7;CIGAR=4M1X1M;DP=187;DPB=189;DPRA=10.1538;EPP=18.2106;EPPR=363.475;GTI=0;LEN=1;MEANALT=4;MQM=60;MQMR=60;NS=3;NUMALT=2;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=259;QR=6194;RO=166;RPL=0;RPP=18.2106;RPPR=363.475;RPR=7;RUN=1;SAF=7;SAP=18.2106;SAR=0;SRF=166;SRP=363.475;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|0:132:117,6,7:117:4372:6,7:245,259:0,-14.9911,-371.165,-14.0526,-351.788,-369.898 0|0:13:13,0,0:13:471:0,0:0,0:0,-3.91339,-42.7233,-3.91339,-42.7233,-42.7233 0|0:42:36,6,0:36:1351:6,0:229,0:-8.32788,0,-109.235,-19.165,-111.041,-129.826 dDocent_Contig_7669 46 . T A 1082.46 . AB=0.143617;ABP=210.409;AC=2;AF=0.333333;AN=6;AO=27;CIGAR=4M1X9M;DP=188;DPB=176.286;DPRA=0;EPP=61.6401;EPPR=237.829;GTI=0;LEN=1;MEANALT=3;MQM=60;MQMR=60;NS=3;NUMALT=2;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=1072;QR=4537;RO=116;RPL=0;RPP=61.6401;RPPR=237.829;RPR=27;RUN=1;SAF=27;SAP=61.6401;SAR=0;SRF=116;SRP=254.901;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|0:111:68,30,11:68:2673:30,11:1182,446:-76.764,0,-210.823,-60.4518,-183.073,-277.004 0|1:9:4,1,4:4:155:1,4:40,160:-11.976,-9.88503,-22.3117,0,-9.42637,-11.5198 0|1:68:44,10,12:44:1709:10,12:398,466:-25.0288,-5.49971,-142.908,0,-107.64,-136.8 dDocent_Contig_7672 118 . T A 63.8187 . AB=0.1875;ABP=30.1537;AC=2;AF=0.333333;AN=6;AO=6;CIGAR=2X;DP=34;DPB=34;DPRA=8;EPP=16.0391;EPPR=61.6401;GTI=0;LEN=1;MEANALT=1.5;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=210;QR=927;RO=27;RPL=0;RPP=16.0391;RPPR=61.6401;RPR=6;RUN=1;SAF=0;SAP=16.0391;SAR=6;SRF=0;SRP=61.6401;SRR=27;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|1:19:15,3:15:530:3:105:-4.02029,0,-42.2542 0|0:2:2,0:2:72:0:0:0,-0.60206,-6.83672 0|1:13:10,3:10:325:3:105:-5.8827,0,-25.6498 dDocent_Contig_7673 113 . A G 1425.18 . AB=0.771429;ABP=47.8047;AC=2;AF=0.333333;AN=6;AO=54;CIGAR=1X;DP=76;DPB=76;DPRA=5.83333;EPP=120.27;EPPR=50.7827;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=1839;QR=739;RO=22;RPL=0;RPP=120.27;RPPR=50.7827;RPR=54;RUN=1;SAF=0;SAP=120.27;SAR=54;SRF=0;SRP=50.7827;SRR=22;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:52:6,46:6:182:46:1578:-126.659,0,-1.02349 0/0:6:6,0:6:209:0:0:0,-1.80618,-19.1511 0/1:18:10,8:10:348:8:261:-18.3897,0,-26.2375 dDocent_Contig_7675 105 . N A 98.8971 . AB=0;ABP=0;AC=2;AF=1;AN=2;AO=3;CIGAR=3X;DP=3;DPB=3;DPRA=0;EPP=9.52472;EPPR=0;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=0;NS=1;NUMALT=1;ODDS=6.68461;PAIRED=1;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=106;QR=0;RO=0;RPL=0;RPP=9.52472;RPPR=0;RPR=3;RUN=1;SAF=0;SAP=9.52472;SAR=3;SRF=0;SRP=0;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL .:.:.:.:.:.:.:. .:.:.:.:.:.:.:. 1|1:3:0,3:0:0:3:106:-9.88916,-0.90309,0 dDocent_Contig_7677 27 . T C 305.275 . AB=0.342857;ABP=10.5174;AC=2;AF=0.333333;AN=6;AO=12;CIGAR=1X;DP=58;DPB=58;DPRA=0.76087;EPP=29.068;EPPR=102.898;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=0;PAIREDR=0.934783;PAO=0;PQA=0;PQR=0;PRO=0;QA=487;QR=1796;RO=46;RPL=0;RPP=29.068;RPPR=102.898;RPR=12;RUN=1;SAF=12;SAP=29.068;SAR=0;SRF=46;SRP=102.898;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:19:11,8:11:432:8:325:-23.9001,0,-33.5143 0/0:23:23,0:23:921:0:0:0,-6.92369,-83.1973 0/1:16:12,4:12:443:4:162:-10.1503,0,-35.3863 dDocent_Contig_7678 131 . G C 335.623 . AB=0.333333;ABP=14.5915;AC=3;AF=0.5;AN=6;AO=16;CIGAR=1X;DP=48;DPB=48;DPRA=0;EPP=37.7539;EPPR=72.4974;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=583;QR=1146;RO=32;RPL=0;RPP=37.7539;RPPR=72.4974;RPR=16;RUN=1;SAF=0;SAP=37.7539;SAR=16;SRF=0;SRP=72.4974;SRR=32;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:19:14,5:14:517:5:182:-11.0154,0,-41.1526 0/1:11:7,4:7:250:4:146:-10.1864,0,-19.5343 0/1:18:11,7:11:379:7:255:-17.8833,0,-29.0177 dDocent_Contig_7680 12 . C T 128.854 . AB=0.357143;ABP=5.49198;AC=1;AF=0.166667;AN=6;AO=5;CIGAR=1M1I3M1X;DP=49;DPB=50;DPRA=0.8;EPP=13.8677;EPPR=87.6977;GTI=0;LEN=1;MEANALT=2;MQM=60;MQMR=60;NS=3;NUMALT=2;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=197;QR=1496;RO=39;RPL=0;RPP=13.8677;RPPR=87.6977;RPR=5;RUN=1;SAF=5;SAP=13.8677;SAR=0;SRF=39;SRP=87.6977;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|1:14:6,5,3:6:230:5,3:197,115:-14.4082,0,-17.3718,-6.77961,-9.43818,-24.7477 0|0:20:19,0,1:19:727:0,1:0,39:0,-5.71957,-65.3693,-2.12404,-62.1631,-61.862 0|0:15:14,0,0:14:539:0,0:0,0:0,-4.21442,-48.4465,-4.21442,-48.4465,-48.4465 dDocent_Contig_7681 11 . T C 486.051 . AB=0.529412;ABP=3.26577;AC=3;AF=0.5;AN=6;AO=18;CIGAR=1X;DP=34;DPB=34;DPRA=0;EPP=42.0968;EPPR=37.7539;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=0.166667;PAIREDR=0.9375;PAO=0;PQA=0;PQR=0;PRO=0;QA=703;QR=637;RO=16;RPL=0;RPP=42.0968;RPPR=37.7539;RPR=18;RUN=1;SAF=18;SAP=42.0968;SAR=0;SRF=16;SRP=37.7539;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:14:4,10:4:155:10:396:-31.7809,0,-10.1099 0/1:12:6,6:6:241:6:231:-17.5415,0,-18.4539 0/1:8:6,2:6:241:2:76:-4.8053,0,-19.6584 dDocent_Contig_7682 189 . A G 148.916 . AB=0.21875;ABP=24.9965;AC=1;AF=0.166667;AN=6;AO=8;CIGAR=1X;DP=58;DPB=58;DPRA=28.5;EPP=20.3821;EPPR=111.584;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=326;QR=1888;RO=50;RPL=8;RPP=20.3821;RPPR=111.584;RPR=0;RUN=1;SAF=0;SAP=20.3821;SAR=8;SRF=0;SRP=111.584;SRR=50;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:32:25,7:25:969:7:285:-16.3914,0,-77.8875 0/0:1:1,0:1:8:0:0:0,-0.30103,-0.799998 0/0:25:24,1:24:911:1:41:0,-3.43118,-78.2074 dDocent_Contig_7683 126 . T C 100.229 . AB=0.625;ABP=4.09604;AC=1;AF=0.166667;AN=6;AO=5;CIGAR=1X;DP=48;DPB=48;DPRA=0.4;EPP=13.8677;EPPR=96.3836;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=155;QR=1489;RO=43;RPL=0;RPP=13.8677;RPPR=96.3836;RPR=5;RUN=1;SAF=0;SAP=13.8677;SAR=5;SRF=0;SRP=96.3836;SRR=43;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:29:29,0:29:1011:0:0:0,-8.72987,-91.3009 0/1:8:3,5:3:104:5:155:-11.8468,0,-7.29478 0/0:11:11,0:11:374:0:0:0,-3.31133,-33.9874 dDocent_Contig_7684 17 . T C 177.809 . AB=0.161765;ABP=70.5814;AC=3;AF=0.5;AN=6;AO=11;CIGAR=1X4M;DP=68;DPB=68;DPRA=0;EPP=26.8965;EPPR=122.441;GTI=0;LEN=1;MEANALT=1.33333;MQM=60;MQMR=60;NS=3;NUMALT=2;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=435;QR=2191;RO=55;RPL=0;RPP=26.8965;RPPR=122.441;RPR=11;RUN=1;SAF=11;SAP=26.8965;SAR=0;SRF=55;SRP=122.441;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|1:45:38,0,7:38:1514:0,7:0,272:-11.2987,-22.7379,-147.418,0,-125.07,-122.963 0|1:18:15,2,1:15:597:2,1:74,40:-1.51873,0,-48.5528,-2.72917,-45.8597,-51.6094 0|1:5:2,0,3:2:80:0,3:0,123:-9.95964,-10.5617,-17.1479,0,-6.98973,-6.08664 dDocent_Contig_7685 204 . T G 228.614 . AB=0.292683;ABP=18.3165;AC=3;AF=0.5;AN=6;AO=12;CIGAR=1X;DP=41;DPB=41;DPRA=0;EPP=29.068;EPPR=65.983;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=440;QR=1067;RO=29;RPL=12;RPP=29.068;RPPR=65.983;RPR=0;RUN=1;SAF=0;SAP=29.068;SAR=12;SRF=0;SRP=65.983;SRR=29;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:25:17,8:17:627:8:292:-19.1049,0,-49.2404 0/1:4:3,1:3:109:1:37:-2.49371,0,-8.96388 0/1:12:9,3:9:331:3:111:-6.74156,0,-26.5283 dDocent_Contig_7687 44 . T G 1381.34 . AB=0.605263;ABP=10.3247;AC=4;AF=0.666667;AN=6;AO=47;CIGAR=1X;DP=77;DPB=77;DPRA=0;EPP=105.07;EPPR=44.7026;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=1817;QR=1141;RO=30;RPL=0;RPP=105.07;RPPR=44.7026;RPR=47;RUN=1;SAF=47;SAP=105.07;SAR=0;SRF=30;SRP=68.1545;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:27:12,15:12:472:15:584:-44.7709,0,-34.7031 1/1:1:0,1:0:0:1:39:-3.89656,-0.30103,0 0/1:49:18,31:18:669:31:1194:-92.9885,0,-45.7736 dDocent_Contig_7688 19 . C T 1001.9 . AB=0.4;ABP=11.2619;AC=3;AF=0.5;AN=6;AO=38;CIGAR=1X;DP=95;DPB=95;DPRA=0;EPP=85.5263;EPPR=118.251;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=0.947368;PAIREDR=0.859649;PAO=0;PQA=0;PQR=0;PRO=0;QA=1481;QR=2272;RO=57;RPL=0;RPP=85.5263;RPPR=126.784;RPR=38;RUN=1;SAF=38;SAP=85.5263;SAR=0;SRF=56;SRP=118.251;SRR=1;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:55:32,23:32:1286:23:911:-65.7406,0,-99.451 0/1:18:12,6:12:469:6:237:-16.2844,0,-37.1365 0/1:22:13,9:13:517:9:333:-23.6883,0,-40.2534 dDocent_Contig_7689 133 . T G 305.544 . AB=0.298246;ABP=23.1631;AC=3;AF=0.5;AN=6;AO=17;CIGAR=1X;DP=57;DPB=57;DPRA=0;EPP=39.9253;EPPR=89.8692;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=0.925;PAO=0;PQA=0;PQR=0;PRO=0;QA=580;QR=1366;RO=40;RPL=0;RPP=39.9253;RPPR=89.8692;RPR=17;RUN=1;SAF=0;SAP=39.9253;SAR=17;SRF=0;SRP=89.8692;SRR=40;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:21:13,8:13:441:8:276:-18.8541,0,-33.6934 0/1:13:11,2:11:381:2:70:-2.73401,0,-30.7101 0/1:23:16,7:16:544:7:234:-14.4632,0,-42.3592 dDocent_Contig_7690 23 . T C 63.7728 . AB=0.333333;ABP=5.18177;AC=1;AF=0.166667;AN=6;AO=3;CIGAR=1X1M1X;DP=17;DPB=17;DPRA=2.25;EPP=9.52472;EPPR=33.4109;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=117;QR=548;RO=14;RPL=0;RPP=9.52472;RPPR=33.4109;RPR=3;RUN=1;SAF=3;SAP=9.52472;SAR=0;SRF=14;SRP=33.4109;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|0:7:7,0:7:279:0:0:0,-2.10721,-25.4817 0|0:1:1,0:1:38:0:0:0,-0.30103,-3.79727 0|1:9:6,3:6:231:3:117:-8.20043,0,-18.4457 dDocent_Contig_7691 34 . A C 92.6984 . AB=0.109091;ABP=149.012;AC=1;AF=0.25;AN=4;AO=12;CIGAR=1X;DP=125;DPB=125;DPRA=7.33333;EPP=29.068;EPPR=246.215;GTI=0;LEN=1;MEANALT=2;MQM=60;MQMR=60;NS=2;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=0.428571;PAO=0;PQA=0;PQR=0;PRO=0;QA=487;QR=4435;RO=112;RPL=0;RPP=29.068;RPPR=246.215;RPR=12;RUN=1;SAF=12;SAP=29.068;SAR=0;SRF=112;SRP=246.215;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:110:97,12:97:3841:12:487:-10.9688,0,-312.504 ./.:.:.:.:.:.:.:. 0/0:15:15,0:15:594:0:0:0,-4.51545,-53.7941 dDocent_Contig_7693 57 . C T 262.441 . AB=0.263158;ABP=30.7823;AC=2;AF=0.333333;AN=6;AO=15;CIGAR=1X;DP=70;DPB=70;DPRA=2.19231;EPP=35.5824;EPPR=122.441;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=514;QR=2184;RO=55;RPL=15;RPP=35.5824;RPPR=122.441;RPR=0;RUN=1;SAF=15;SAP=35.5824;SAR=0;SRF=55;SRP=122.441;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:37:27,10:27:1087:10:340:-19.7874,0,-86.9781 0/0:13:13,0:13:519:0:0:0,-3.91339,-47.0565 0/1:20:15,5:15:578:5:174:-9.97967,0,-46.3405 dDocent_Contig_7694 41 . A G 161.475 . AB=0.461538;ABP=3.17734;AC=1;AF=0.166667;AN=6;AO=6;CIGAR=1X;DP=60;DPB=60;DPRA=0.553191;EPP=16.0391;EPPR=120.27;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=239;QR=2159;RO=54;RPL=0;RPP=16.0391;RPPR=120.27;RPR=6;RUN=1;SAF=6;SAP=16.0391;SAR=0;SRF=54;SRP=120.27;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:27:27,0:27:1083:0:0:0,-8.12781,-97.7538 0/1:13:7,6:7:268:6:239:-17.9714,0,-20.566 0/0:20:20,0:20:808:0:0:0,-6.0206,-73.0354 dDocent_Contig_7695 71 . G A 220.195 . AB=0.454545;ABP=3.40511;AC=2;AF=0.333333;AN=6;AO=10;CIGAR=1X;DP=28;DPB=28;DPRA=1.83333;EPP=24.725;EPPR=42.0968;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=346;QR=625;RO=18;RPL=10;RPP=24.725;RPPR=42.0968;RPR=0;RUN=1;SAF=10;SAP=24.725;SAR=0;SRF=18;SRP=42.0968;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:6:6,0:6:205:0:0:0,-1.80618,-18.7851 0/1:15:6,9:6:211:9:311:-23.8091,0,-14.8183 0/1:7:6,1:6:209:1:35:-1.39142,0,-17.0438 dDocent_Contig_7696 15 . G A 85.674 . AB=0.126437;ABP=108.464;AC=2;AF=0.333333;AN=6;AO=13;CIGAR=1X;DP=136;DPB=136;DPRA=0;EPP=31.2394;EPPR=270.101;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=482;QR=4711;RO=123;RPL=0;RPP=31.2394;RPPR=270.101;RPR=13;RUN=1;SAF=13;SAP=31.2394;SAR=0;SRF=123;SRP=270.101;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:80:72,8:72:2771:8:297:-2.9958,0,-225.459 0/1:7:4,3:4:152:3:120:-9.0801,0,-11.94 0/0:49:47,2:47:1788:2:65:0,-8.58073,-154.984 dDocent_Contig_7697 65 . G A 8792.55 . AB=0.762887;ABP=61.2371;AC=5;AF=0.833334;AN=6;AO=287;CIGAR=1X3M;DP=327;DPB=327;DPRA=0;EPP=626.223;EPPR=59.4686;GTI=0;LEN=1;MEANALT=2.66667;MQM=60;MQMR=60;NS=3;NUMALT=4;ODDS=0;PAIRED=0.989547;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=10578;QR=937;RO=26;RPL=287;RPP=626.223;RPPR=59.4686;RPR=0;RUN=1;SAF=287;SAP=626.223;SAR=0;SRF=26;SRP=59.4686;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 1|1:230:16,0,1,0,213:16:591:0,1,0,213:0,39,0,7923:-659.401,-664.218,-712.558,-661.012,-709.352,-709.051,-664.218,-712.558,-709.352,-712.558,-15.798,-64.1194,-60.9123,-64.1194,0 1|1:34:1,0,4,2,27:1:22:0,4,2,27:0,141,74,1014:-92.6097,-92.9107,-94.5851,-81.4355,-83.1092,-81.9051,-86.8569,-88.5311,-77.0553,-87.929,-9.8373,-11.4965,0,-5.42999,-3.36867 0|1:63:9,6,0,0,47:9:324:6,0,0,47:212,0,0,1641:-130.761,-116.207,-140.84,-133.47,-142.646,-159.909,-133.47,-142.646,-159.909,-159.909,0,-9.18241,-26.4448,-26.4448,-12.2964 dDocent_Contig_7701 40 . T C 47.8218 . AB=0.666667;ABP=3.73412;AC=1;AF=0.166667;AN=6;AO=2;CIGAR=1X;DP=38;DPB=38;DPRA=0.171429;EPP=7.35324;EPPR=81.1833;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=79;QR=1387;RO=36;RPL=0;RPP=7.35324;RPPR=81.1833;RPR=2;RUN=1;SAF=2;SAP=7.35324;SAR=0;SRF=36;SRP=81.1833;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:21:21,0:21:793:0:0:0,-6.32163,-71.6848 0/1:3:1,2:1:40:2:79:-6.59454,0,-3.09259 0/0:14:14,0:14:554:0:0:0,-4.21442,-50.205 dDocent_Contig_7702 7 . T C 201.793 . AB=0.218182;ABP=40.9518;AC=3;AF=0.5;AN=6;AO=12;CIGAR=1X;DP=55;DPB=55;DPRA=0;EPP=29.068;EPPR=96.3836;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=457;QR=1637;RO=43;RPL=0;RPP=29.068;RPPR=96.3836;RPR=12;RUN=1;SAF=12;SAP=29.068;SAR=0;SRF=43;SRP=96.3836;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:43:34,9:34:1300:9:342:-18.1924,0,-104.345 0/1:2:1,1:1:38:1:37:-3.09577,0,-3.19521 0/1:10:8,2:8:299:2:78:-4.39317,0,-24.254 dDocent_Contig_7703 201 . A G 140.015 . AB=0.15;ABP=24.2907;AC=4;AF=0.666667;AN=6;AO=7;CIGAR=1X;DP=24;DPB=24;DPRA=0;EPP=18.2106;EPPR=39.9253;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=244;QR=625;RO=17;RPL=7;RPP=18.2106;RPPR=39.9253;RPR=0;RUN=1;SAF=0;SAP=18.2106;SAR=7;SRF=0;SRP=39.9253;SRR=17;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:12:10,2:10:368:2:59:-1.99051,0,-29.8566 0/1:8:7,1:7:257:1:37:-1.28959,0,-21.0757 1/1:4:0,4:0:0:4:148:-13.682,-1.20412,0 dDocent_Contig_7704 132 . T C 56.3483 . AB=0.3;ABP=6.48466;AC=1;AF=0.166667;AN=6;AO=3;CIGAR=1X;DP=33;DPB=33;DPRA=0.869565;EPP=9.52472;EPPR=68.1545;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=109;QR=1090;RO=30;RPL=0;RPP=9.52472;RPPR=68.1545;RPR=3;RUN=1;SAF=0;SAP=9.52472;SAR=3;SRF=0;SRP=68.1545;SRR=30;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:10:7,3:7:244:3:109:-7.1577,0,-19.2882 0/0:8:8,0:8:294:0:0:0,-2.40824,-26.8124 0/0:15:15,0:15:552:0:0:0,-4.51545,-50.0195 dDocent_Contig_7705 46 . A T 1452.9 . AB=0.784615;ABP=48.7448;AC=3;AF=0.5;AN=6;AO=51;CIGAR=1X;DP=65;DPB=65;DPRA=0;EPP=38.8183;EPPR=33.4109;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=1882;QR=523;RO=14;RPL=11;RPP=38.8183;RPPR=33.4109;RPR=40;RUN=1;SAF=51;SAP=113.755;SAR=0;SRF=14;SRP=33.4109;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:41:7,34:7:255:34:1251:-100.542,0,-10.9586 0/1:12:5,7:5:191:7:258:-19.9614,0,-13.9458 0/1:12:2,10:2:77:10:373:-30.3067,0,-3.69678 dDocent_Contig_7706 8 . G T 46.8657 . AB=0.214286;ABP=12.937;AC=1;AF=0.166667;AN=6;AO=3;CIGAR=1X;DP=48;DPB=48;DPRA=0.823529;EPP=9.52472;EPPR=100.727;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=0.933333;PAO=0;PQA=0;PQR=0;PRO=0;QA=115;QR=1699;RO=45;RPL=0;RPP=9.52472;RPPR=100.727;RPR=3;RUN=1;SAF=3;SAP=9.52472;SAR=0;SRF=45;SRP=100.727;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:17:17,0:17:648:0:0:0,-5.11751,-58.6557 0/0:17:17,0:17:633:0:0:0,-5.11751,-57.3029 0/1:14:11,3:11:418:3:115:-6.51047,0,-33.7564 dDocent_Contig_7707 46 . A G 34.7234 . AB=0.285714;ABP=5.80219;AC=1;AF=0.166667;AN=6;AO=4;CIGAR=1X;DP=61;DPB=61;DPRA=0;EPP=11.6962;EPPR=126.784;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=158;QR=2162;RO=57;RPL=0;RPP=11.6962;RPPR=126.784;RPR=4;RUN=1;SAF=4;SAP=11.6962;SAR=0;SRF=57;SRP=126.784;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:34:33,1:33:1227:1:40:0,-6.23934,-106.711 0/1:7:5,2:5:192:2:78:-5.29609,0,-15.5419 0/0:20:19,1:19:743:1:40:0,-2.02492,-63.1995 dDocent_Contig_7708 98 . N G 65.5375 . AB=0;ABP=0;AC=2;AF=1;AN=2;AO=2;CIGAR=1X;DP=2;DPB=2;DPRA=0;EPP=7.35324;EPPR=0;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=0;NS=1;NUMALT=1;ODDS=5.99146;PAIRED=1;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=69;QR=0;RO=0;RPL=2;RPP=7.35324;RPPR=0;RPR=0;RUN=1;SAF=2;SAP=7.35324;SAR=0;SRF=0;SRP=0;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 1/1:2:0,2:0:0:2:69:-6.55266,-0.60206,0 ./.:.:.:.:.:.:.:. ./.:.:.:.:.:.:.:. dDocent_Contig_7709 13 . A G 1452.51 . AB=0.422764;ABP=9.38348;AC=3;AF=0.5;AN=6;AO=52;CIGAR=1X;DP=123;DPB=123;DPRA=0;EPP=115.927;EPPR=157.185;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=2076;QR=2796;RO=71;RPL=0;RPP=115.927;RPPR=157.185;RPR=52;RUN=1;SAF=52;SAP=115.927;SAR=0;SRF=71;SRP=157.185;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:74:37,37:37:1462:37:1482:-111.342,0,-109.551 0/1:16:12,4:12:469:4:153:-9.32054,0,-37.7427 0/1:33:22,11:22:865:11:441:-30.111,0,-68.2227 dDocent_Contig_7712 19 . A C 36.6056 . AB=0.285714;ABP=5.80219;AC=1;AF=0.166667;AN=6;AO=2;CIGAR=1X;DP=26;DPB=26;DPRA=0.736842;EPP=7.35324;EPPR=55.1256;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=8.67362e-19;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=80;QR=963;RO=24;RPL=0;RPP=7.35324;RPPR=55.1256;RPR=2;RUN=1;SAF=2;SAP=7.35324;SAR=0;SRF=24;SRP=55.1256;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:8:8,0:8:327:0:0:0,-2.40824,-29.8001 0/1:7:5,2:5:195:2:80:-5.48436,0,-15.8154 0/0:11:11,0:11:441:0:0:0,-3.31133,-40.0461 dDocent_Contig_7713 60 . C T 946.216 . AB=0.603774;ABP=7.96781;AC=3;AF=0.5;AN=6;AO=32;CIGAR=1X;DP=53;DPB=53;DPRA=0;EPP=72.4974;EPPR=48.6112;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=1278;QR=848;RO=21;RPL=32;RPP=72.4974;RPPR=48.6112;RPR=0;RUN=1;SAF=32;SAP=72.4974;SAR=0;SRF=21;SRP=48.6112;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:37:10,27:10:406:27:1075:-85.9021,0,-25.7619 0/1:11:9,2:9:363:2:81:-4.3744,0,-29.7225 0/1:5:2,3:2:79:3:122:-9.86734,0,-5.99248 dDocent_Contig_7715 172 . A C 1196.23 . AB=0.625;ABP=11.6962;AC=3;AF=0.5;AN=6;AO=40;CIGAR=1X1M1X;DP=64;DPB=64;DPRA=0;EPP=89.8692;EPPR=55.1256;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=1593;QR=903;RO=24;RPL=40;RPP=89.8692;RPPR=55.1256;RPR=0;RUN=1;SAF=0;SAP=89.8692;SAR=40;SRF=0;SRP=55.1256;SRR=24;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|1:41:15,26:15:566:26:1033:-80.9241,0,-38.9352 0|1:5:2,3:2:80:3:121:-9.77505,0,-6.08664 0|1:18:7,11:7:257:11:439:-34.4469,0,-18.0595 dDocent_Contig_7716 8 . G A 72.9831 . AB=0.118644;ABP=77.5396;AC=2;AF=0.333334;AN=6;AO=7;CIGAR=1X2M1X;DP=90;DPB=90;DPRA=0.951613;EPP=18.2106;EPPR=155.459;GTI=0;LEN=1;MEANALT=2;MQM=60;MQMR=59.2436;NS=3;NUMALT=2;ODDS=0;PAIRED=0;PAIREDR=0.448718;PAO=0;PQA=0;PQR=0;PRO=0;QA=267;QR=3003;RO=78;RPL=0;RPP=18.2106;RPPR=172.385;RPR=7;RUN=1;SAF=7;SAP=18.2106;SAR=0;SRF=76;SRP=155.459;SRR=2;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|1:41:35,0,6:35:1355:0,6:0,228:-8.54042,-19.0765,-130.274,0,-111.578,-109.772 0|0:31:29,2,0:29:1107:2,0:69,0:0,-2.77927,-93.3686,-8.72987,-93.9707,-99.574 0|1:18:14,2,1:14:541:2,1:78,39:-2.19734,0,-43.83,-3.20588,-41.226,-47.3371 dDocent_Contig_7717 45 . G T 76.462 . AB=0.162791;ABP=45.4803;AC=2;AF=0.333333;AN=6;AO=8;CIGAR=1X;DP=93;DPB=93;DPRA=0;EPP=20.3821;EPPR=187.585;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=296;QR=3279;RO=85;RPL=0;RPP=20.3821;RPPR=187.585;RPR=8;RUN=1;SAF=8;SAP=20.3821;SAR=0;SRF=85;SRP=187.585;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:50:49,1:49:1901:1:38:0,-11.2542,-167.53 0/1:19:17,2:17:653:2:77:-1.58957,0,-53.3837 0/1:24:19,5:19:725:5:181:-9.4172,0,-58.3506 dDocent_Contig_7718 123 . T G 208.467 . AB=0.34375;ABP=9.79615;AC=2;AF=0.333333;AN=6;AO=11;CIGAR=1X;DP=39;DPB=39;DPRA=2.28571;EPP=26.8965;EPPR=63.8115;GTI=0;LEN=1;MEANALT=1;MQM=40;MQMR=56.5714;NS=3;NUMALT=1;ODDS=0;PAIRED=0;PAIREDR=0.678571;PAO=0;PQA=0;PQR=0;PRO=0;QA=383;QR=946;RO=28;RPL=0;RPP=26.8965;RPPR=63.8115;RPR=11;RUN=1;SAF=0;SAP=26.8965;SAR=11;SRF=0;SRP=63.8115;SRR=28;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:17:13,4:13:445:4:140:-7.39109,0,-35.1507 0/0:7:7,0:7:229:0:0:0,-2.10721,-20.8845 0/1:15:8,7:8:272:7:243:-16.9784,0,-20.2908 dDocent_Contig_7719 10 . T A 277.38 . AB=0.37931;ABP=6.67934;AC=2;AF=0.333333;AN=6;AO=11;CIGAR=1X;DP=40;DPB=40;DPRA=1.31818;EPP=26.8965;EPPR=65.983;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=436;QR=1150;RO=29;RPL=0;RPP=26.8965;RPPR=65.983;RPR=11;RUN=1;SAF=11;SAP=26.8965;SAR=0;SRF=29;SRP=65.983;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:18:13,5:13:516:5:198:-12.779,0,-41.3684 0/1:11:5,6:5:192:6:238:-18.4819,0,-14.3359 0/0:11:11,0:11:442:0:0:0,-3.31133,-40.1358 dDocent_Contig_7722 1 . N G 104.569 . AB=0;ABP=0;AC=2;AF=1;AN=2;AO=3;CIGAR=1X;DP=3;DPB=3;DPRA=0;EPP=9.52472;EPPR=0;GTI=0;LEN=1;MEANALT=1;MQM=47.3333;MQMR=0;NS=1;NUMALT=1;ODDS=6.68461;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=114;QR=0;RO=0;RPL=0;RPP=9.52472;RPPR=0;RPR=3;RUN=1;SAF=0;SAP=9.52472;SAR=3;SRF=0;SRP=0;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 1/1:3:0,3:0:0:3:114:-10.4564,-0.90309,0 ./.:.:.:.:.:.:.:. ./.:.:.:.:.:.:.:. dDocent_Contig_7727 40 . A G 52.0794 . AB=0.128205;ABP=49.8362;AC=1;AF=0.166667;AN=6;AO=5;CIGAR=1X;DP=63;DPB=63;DPRA=3.25;EPP=13.8677;EPPR=128.956;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=201;QR=2327;RO=58;RPL=0;RPP=13.8677;RPPR=128.956;RPR=5;RUN=1;SAF=5;SAP=13.8677;SAR=0;SRF=58;SRP=128.956;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:39:34,5:34:1378:5:201:-6.73072,0,-112.531 0/0:4:4,0:4:139:0:0:0,-1.20412,-12.8478 0/0:20:20,0:20:810:0:0:0,-6.0206,-73.2162 dDocent_Contig_7728 21 . T A 297.048 . AB=0.375;ABP=7.35324;AC=2;AF=0.333333;AN=6;AO=12;CIGAR=1X;DP=60;DPB=60;DPRA=0.571429;EPP=29.068;EPPR=107.241;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=468;QR=1824;RO=48;RPL=0;RPP=29.068;RPPR=107.241;RPR=12;RUN=1;SAF=12;SAP=29.068;SAR=0;SRF=48;SRP=107.241;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:28:28,0:28:1062:0:0:0,-8.42884,-95.8835 0/1:13:5,8:5:185:8:312:-24.5301,0,-13.0919 0/1:19:15,4:15:577:4:156:-8.69755,0,-46.5512 dDocent_Contig_7730 22 . T A 59.5211 . AB=0.210526;ABP=16.8392;AC=2;AF=0.333333;AN=6;AO=4;CIGAR=1X;DP=25;DPB=25;DPRA=1.58333;EPP=11.6962;EPPR=48.6112;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=54.8571;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=0.857143;PAO=0;PQA=0;PQR=0;PRO=0;QA=160;QR=837;RO=21;RPL=0;RPP=11.6962;RPPR=48.6112;RPR=4;RUN=1;SAF=4;SAP=11.6962;SAR=0;SRF=21;SRP=48.6112;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:16:13,3:13:514:3:120:-6.37083,0,-38.3623 0/1:3:2,1:2:82:1:40:-3.09259,0,-6.87659 0/0:6:6,0:6:241:0:0:0,-1.80618,-22.0658 dDocent_Contig_7732 10 . G T 179.159 . AB=0;ABP=0;AC=2;AF=0.333333;AN=6;AO=5;CIGAR=1X;DP=31;DPB=31;DPRA=0.384615;EPP=13.8677;EPPR=59.4686;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=193;QR=1014;RO=26;RPL=0;RPP=13.8677;RPPR=59.4686;RPR=5;RUN=1;SAF=5;SAP=13.8677;SAR=0;SRF=26;SRP=59.4686;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:17:17,0:17:662:0:0:0,-5.11751,-59.9141 1/1:5:0,5:0:0:5:193:-17.7398,-1.50515,0 0/0:9:9,0:9:352:0:0:0,-2.70927,-32.0411 dDocent_Contig_7733 43 . C A 141.923 . AB=0.2;ABP=34.2795;AC=2;AF=0.333333;AN=6;AO=8;CIGAR=1X;DP=63;DPB=63;DPRA=0.869565;EPP=20.3821;EPPR=120.27;GTI=0;LEN=1;MEANALT=1.5;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=323;QR=2159;RO=54;RPL=0;RPP=20.3821;RPPR=120.27;RPR=8;RUN=1;SAF=8;SAP=20.3821;SAR=0;SRF=54;SRP=120.27;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:28:24,3:24:956:3:122:-2.83605,0,-77.8012 0/1:12:7,5:7:277:5:201:-14.8585,0,-21.6863 0/0:23:23,0:23:926:0:0:0,-6.92369,-83.6428 dDocent_Contig_7734 19 . T C 556.394 . AB=0.415094;ABP=6.32897;AC=1;AF=0.166667;AN=6;AO=23;CIGAR=1X;DP=77;DPB=77;DPRA=9.125;EPP=52.9542;EPPR=120.27;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=3.46945e-18;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=846;QR=2110;RO=54;RPL=0;RPP=52.9542;RPPR=120.27;RPR=23;RUN=1;SAF=23;SAP=52.9542;SAR=0;SRF=54;SRP=120.27;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:53:31,22:31:1228:22:809:-57.1622,0,-94.843 0/0:4:4,0:4:140:0:0:0,-1.20412,-12.9424 0/0:20:19,1:19:742:1:37:0,-2.32277,-63.4025 dDocent_Contig_7736 26 . A T 78.0513 . AB=0.25;ABP=11.6962;AC=1;AF=0.166667;AN=6;AO=4;CIGAR=2X;DP=142;DPB=142;DPRA=0.253968;EPP=11.6962;EPPR=302.673;GTI=0;LEN=1;MEANALT=1;MQM=54.5;MQMR=60;NS=3;NUMALT=1;ODDS=8.67362e-19;PAIRED=0;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=157;QR=5472;RO=138;RPL=2;RPP=3.0103;RPPR=302.673;RPR=2;RUN=1;SAF=2;SAP=3.0103;SAR=2;SRF=138;SRP=302.673;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|0:62:62,0:62:2477:0:0:0,-18.6639,-223.079 0|1:16:12,4:12:481:4:157:-9.62904,0,-38.8248 0|0:64:64,0:64:2514:0:0:0,-19.2659,-226.41 dDocent_Contig_7737 7 . T G 132.664 . AB=0.75;ABP=7.35324;AC=1;AF=0.166667;AN=6;AO=6;CIGAR=1X;DP=46;DPB=46;DPRA=0.421053;EPP=16.0391;EPPR=89.8692;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=191;QR=1525;RO=40;RPL=0;RPP=16.0391;RPPR=89.8692;RPR=6;RUN=1;SAF=6;SAP=16.0391;SAR=0;SRF=40;SRP=89.8692;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:25:25,0:25:943:0:0:0,-7.52575,-85.1826 0/1:8:2,6:2:78:6:191:-15.0902,0,-4.99523 0/0:13:13,0:13:504:0:0:0,-3.91339,-45.7089 dDocent_Contig_7738 96 . T A 485.53 . AB=0.594595;ABP=5.88603;AC=4;AF=0.666667;AN=6;AO=23;CIGAR=1X;DP=38;DPB=38;DPRA=0;EPP=52.9542;EPPR=35.5824;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=692;QR=507;RO=15;RPL=23;RPP=52.9542;RPPR=35.5824;RPR=0;RUN=1;SAF=23;SAP=52.9542;SAR=0;SRF=15;SRP=35.5824;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:18:6,12:6:199:12:334:-24.9119,0,-12.8178 1/1:1:0,1:0:0:1:35:-3.49863,-0.30103,0 0/1:19:9,10:9:308:10:323:-23.6646,0,-22.3327 dDocent_Contig_7739 7 . T A 446.383 . AB=0.177215;ABP=145.998;AC=2;AF=0.333333;AN=6;AO=31;CIGAR=1X;DP=223;DPB=223;DPRA=0;EPP=70.3259;EPPR=419.933;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=1.38778e-17;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=1171;QR=7353;RO=192;RPL=0;RPP=70.3259;RPPR=419.933;RPR=31;RUN=1;SAF=31;SAP=70.3259;SAR=0;SRF=192;SRP=419.933;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:138:120,18:120:4615:18:677:-19.718,0,-373.854 0/1:20:10,10:10:390:10:379:-28.4432,0,-29.4381 0/0:65:62,3:62:2348:3:115:0,-8.84192,-200.808 dDocent_Contig_7740 113 . C T 33.3534 . AB=0.5;ABP=3.0103;AC=1;AF=0.166667;AN=6;AO=2;CIGAR=1X;DP=28;DPB=28;DPRA=0.333333;EPP=7.35324;EPPR=59.4686;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=58.4615;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=0.961538;PAO=0;PQA=0;PQR=0;PRO=0;QA=67;QR=851;RO=26;RPL=0;RPP=7.35324;RPPR=59.4686;RPR=2;RUN=1;SAF=0;SAP=7.35324;SAR=2;SRF=0;SRP=59.4686;SRR=26;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:15:15,0:15:488:0:0:0,-4.51545,-42.8623 0/1:4:2,2:2:66:2:67:-5.15892,0,-5.06424 0/0:9:9,0:9:297:0:0:0,-2.70927,-27.052 dDocent_Contig_7742 10 . G A 4360.47 . AB=0.682243;ABP=64.7451;AC=3;AF=0.5;AN=6;AO=146;CIGAR=1X;DP=214;DPB=214;DPRA=0;EPP=320.045;EPPR=117.971;GTI=0;LEN=1;MEANALT=1;MQM=59.3973;MQMR=58.0441;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=0.102941;PAO=0;PQA=0;PQR=0;PRO=0;QA=5625;QR=2664;RO=68;RPL=0;RPP=320.045;RPPR=150.67;RPR=146;RUN=1;SAF=146;SAP=320.045;SAR=0;SRF=64;SRP=117.971;SRR=4;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:151:42,109:42:1636:109:4194:-331.1,0,-101.593 0/1:15:5,10:5:200:10:378:-29.8512,0,-13.8645 0/1:48:21,27:21:828:27:1053:-80.6191,0,-60.1973 dDocent_Contig_7743 8 . G A 3020.25 . AB=0.0567376;ABP=243.643;AC=4;AF=0.666667;AN=6;AO=8;CIGAR=1X19M;DP=157;DPB=158.35;DPRA=0;EPP=20.3821;EPPR=44.2683;GTI=0;LEN=1;MEANALT=6;MQM=60;MQMR=60;NS=3;NUMALT=6;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=305;QR=738;RO=19;RPL=0;RPP=20.3821;RPPR=44.2683;RPR=8;RUN=1;SAF=8;SAP=20.3821;SAR=0;SRF=19;SRP=44.2683;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 1|1:92:0,58,3,8,10,7,4:0:0:58,3,8,10,7,4:2211,118,315,362,282,149:-210.912,-29.5421,-12.0823,-201.205,-19.8334,-200.302,-184.997,-3.62201,-175.289,-182.588,-181.367,0,-171.66,-155.452,-178.357,-187.666,-6.29107,-177.959,-161.751,-158.121,-185.559,-198.715,-17.3455,-189.008,-172.8,-169.171,-175.47,-197.511 0|1:16:6,5,5,0,0,0,0:6:226:5,5,0,0,0,0:192,197,0,0,0,0:-14.4061,-0.456821,-17.46,0,-2.74992,-17.0085,-16.2123,-18.9651,-18.5137,-34.7254,-16.2123,-18.9651,-18.5137,-34.7254,-34.7254,-16.2123,-18.9651,-18.5137,-34.7254,-34.7254,-34.7254,-16.2123,-18.9651,-18.5137,-34.7254,-34.7254,-34.7254,-34.7254 0|1:49:13,28,0,0,0,3,4:13:512:28,0,0,0,3,4:1051,0,0,0,122,156:-82.1816,0,-33.7093,-86.095,-42.1382,-128.221,-86.095,-42.1382,-128.221,-128.221,-86.095,-42.1382,-128.221,-128.221,-128.221,-76.0287,-32.0711,-118.156,-118.156,-118.156,-117.253,-73.2694,-29.3131,-115.397,-115.397,-115.397,-105.332,-114.193 dDocent_Contig_7744 112 . G A 154.158 . AB=0.24;ABP=32.3686;AC=2;AF=0.333333;AN=6;AO=14;CIGAR=1X;DP=72;DPB=72;DPRA=0;EPP=33.4109;EPPR=128.956;GTI=0;LEN=1;MEANALT=1;MQM=45.6429;MQMR=56.569;NS=3;NUMALT=1;ODDS=0;PAIRED=0;PAIREDR=0.810345;PAO=0;PQA=0;PQR=0;PRO=0;QA=440;QR=1889;RO=58;RPL=0;RPP=33.4109;RPPR=128.956;RPR=14;RUN=1;SAF=0;SAP=33.4109;SAR=14;SRF=0;SRP=128.956;SRR=58;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:41:32,9:32:1043:9:274:-12.3825,0,-81.7051 0/1:9:6,3:6:169:3:100:-6.55564,0,-12.6856 0/0:22:20,2:20:677:2:66:0,-0.405666,-54.3736 dDocent_Contig_7745 11 . T C 164.819 . AB=0.185185;ABP=49.4959;AC=2;AF=0.333333;AN=6;AO=10;CIGAR=1X;DP=73;DPB=73;DPRA=1.42105;EPP=24.725;EPPR=139.813;GTI=0;LEN=1;MEANALT=1;MQM=57.2;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=395;QR=2508;RO=63;RPL=0;RPP=24.725;RPPR=139.813;RPR=10;RUN=1;SAF=10;SAP=24.725;SAR=0;SRF=63;SRP=139.813;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:46:39,7:39:1558:7:277:-11.4289,0,-126.614 0/1:8:5,3:5:194:3:118:-8.57582,0,-15.422 0/0:19:19,0:19:756:0:0:0,-5.71957,-68.3632 dDocent_Contig_7746 109 . G A 516.158 . AB=0.511111;ABP=3.05855;AC=3;AF=0.5;AN=6;AO=23;CIGAR=1X2M1X;DP=45;DPB=45;DPRA=0;EPP=52.9542;EPPR=50.7827;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=3.46945e-18;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=757;QR=741;RO=22;RPL=0;RPP=52.9542;RPPR=50.7827;RPR=23;RUN=1;SAF=0;SAP=52.9542;SAR=23;SRF=0;SRP=50.7827;SRR=22;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|1:28:8,20:8:258:20:668:-52.0076,0,-15.1066 0|1:10:9,1:9:313:1:34:-0.388611,0,-25.4968 0|1:7:5,2:5:170:2:55:-3.1167,0,-13.5277 dDocent_Contig_7747 89 . T A 74.4913 . AB=0.333333;ABP=5.9056;AC=1;AF=0.25;AN=4;AO=4;CIGAR=1X;DP=17;DPB=17;DPRA=2.4;EPP=11.6962;EPPR=31.2394;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=2;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=138;QR=451;RO=13;RPL=4;RPP=11.6962;RPPR=31.2394;RPR=0;RUN=1;SAF=4;SAP=11.6962;SAR=0;SRF=13;SRP=31.2394;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:12:8,4:8:276:4:138:-9.14804,0,-21.5636 ./.:.:.:.:.:.:.:. 0/0:5:5,0:5:175:0:0:0,-1.50515,-16.0937 dDocent_Contig_7748 43 . A G 119.329 . AB=0.214286;ABP=22.8638;AC=1;AF=0.166667;AN=6;AO=6;CIGAR=1X;DP=56;DPB=56;DPRA=2;EPP=16.0391;EPPR=103.072;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=0.96;PAO=0;PQA=0;PQR=0;PRO=0;QA=239;QR=1943;RO=50;RPL=0;RPP=16.0391;RPPR=111.584;RPR=6;RUN=1;SAF=6;SAP=16.0391;SAR=0;SRF=49;SRP=103.072;SRR=1;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:28:22,6:22:860:6:239:-13.4558,0,-69.2823 0/0:16:16,0:16:627:0:0:0,-4.81648,-56.7637 0/0:12:12,0:12:456:0:0:0,-3.61236,-41.3802 dDocent_Contig_7749 15 . A T 60.4399 . AB=0.1;ABP=169.779;AC=3;AF=0.5;AN=6;AO=12;CIGAR=1X;DP=120;DPB=120;DPRA=0;EPP=29.068;EPPR=237.529;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=490;QR=4316;RO=108;RPL=0;RPP=29.068;RPPR=237.529;RPR=12;RUN=1;SAF=12;SAP=29.068;SAR=0;SRF=108;SRP=237.529;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:34:31,3:31:1237:3:123:-1.22977,0,-101.369 0/1:25:23,2:23:926:2:80:-0.0658253,0,-76.1176 0/1:61:54,7:54:2153:7:287:-7.8424,0,-175.583 dDocent_Contig_7750 7 . T C 79.1081 . AB=0.75;ABP=5.18177;AC=1;AF=0.166667;AN=6;AO=6;CIGAR=1X;DP=70;DPB=70;DPRA=5.33333;EPP=16.0391;EPPR=141.985;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=0;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=234;QR=2444;RO=64;RPL=0;RPP=16.0391;RPPR=141.985;RPR=6;RUN=1;SAF=6;SAP=16.0391;SAR=0;SRF=64;SRP=141.985;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:6:6,0:6:228:0:0:0,-1.80618,-20.8842 0/0:60:57,3:57:2177:3:117:0,-7.15142,-185.248 0/1:4:1,3:1:39:3:117:-9.70626,0,-2.69244 dDocent_Contig_7751 146 . C T 36.195 . AB=0.5;ABP=3.0103;AC=1;AF=0.166667;AN=6;AO=2;CIGAR=1M1I4M1X3M1X2M;DP=23;DPB=23.1667;DPRA=0.421053;EPP=7.35324;EPPR=48.6112;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=0;PAIREDR=0.761905;PAO=0;PQA=0;PQR=0;PRO=0;QA=70;QR=832;RO=21;RPL=0;RPP=7.35324;RPPR=48.6112;RPR=2;RUN=1;SAF=0;SAP=7.35324;SAR=2;SRF=0;SRP=48.6112;SRR=21;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|0:13:13,0:13:511:0:0:0,-3.91339,-46.3344 0|1:4:2,2:2:81:2:70:-5.44328,0,-6.48161 0|0:6:6,0:6:240:0:0:0,-1.80618,-21.9762 dDocent_Contig_7752 8 . G A 189.933 . AB=0.333333;ABP=5.9056;AC=1;AF=0.166667;AN=6;AO=4;CIGAR=1X1M4I4M1X;DP=28;DPB=32.5714;DPRA=1.2;EPP=11.6962;EPPR=46.4397;GTI=0;LEN=1;MEANALT=1;MQM=48;MQMR=60;NS=3;NUMALT=2;ODDS=0;PAIRED=0;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=160;QR=778;RO=20;RPL=0;RPP=11.6962;RPPR=46.4397;RPR=4;RUN=1;SAF=4;SAP=11.6962;SAR=0;SRF=20;SRP=46.4397;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|0:6:2,0,4:2:80:0,4:0,146:-11.5649,-12.167,-18.7699,0,-6.98973,-5.78561 0|1:12:8,4,0:8:307:4,0:160,0:-10.9513,0,-24.3777,-13.3595,-25.5818,-38.5511 0|0:10:10,0,0:10:391:0,0:0,0:0,-3.0103,-35.5476,-3.0103,-35.5476,-35.5476 dDocent_Contig_7753 14 . T G 398.493 . AB=0.261905;ABP=23.691;AC=3;AF=0.5;AN=6;AO=15;CIGAR=1X;DP=52;DPB=52;DPRA=3.83333;EPP=35.5824;EPPR=83.3548;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=592;QR=1396;RO=37;RPL=0;RPP=35.5824;RPPR=83.3548;RPR=15;RUN=1;SAF=15;SAP=35.5824;SAR=0;SRF=37;SRP=83.3548;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:42:31,11:31:1163:11:433:-26.6801,0,-92.3188 1/1:4:0,4:0:0:4:159:-14.692,-1.20412,0 0/0:6:6,0:6:233:0:0:0,-1.80618,-21.3398 dDocent_Contig_7754 17 . A C 248.057 . AB=0.357143;ABP=7.97367;AC=2;AF=0.333333;AN=6;AO=10;CIGAR=1X;DP=30;DPB=30;DPRA=7;EPP=24.725;EPPR=46.4397;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=400;QR=795;RO=20;RPL=0;RPP=24.725;RPPR=46.4397;RPR=10;RUN=1;SAF=10;SAP=24.725;SAR=0;SRF=20;SRP=46.4397;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:17:12,5:12:471:5:197:-12.9865,0,-37.6221 0/0:2:2,0:2:81:0:0:0,-0.60206,-7.68573 0/1:11:6,5:6:243:5:203:-15.3417,0,-18.9368 dDocent_Contig_7755 8 . G C 270.256 . AB=0.191489;ABP=80.7213;AC=3;AF=0.5;AN=6;AO=18;CIGAR=1X;DP=94;DPB=94;DPRA=0;EPP=42.0968;EPPR=168.042;GTI=0;LEN=1;MEANALT=1;MQM=54.5;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=0.833333;PAIREDR=0.986842;PAO=0;PQA=0;PQR=0;PRO=0;QA=696;QR=2909;RO=76;RPL=0;RPP=42.0968;RPPR=168.042;RPR=18;RUN=1;SAF=18;SAP=42.0968;SAR=0;SRF=76;SRP=168.042;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:59:48,11:48:1829:11:427:-21.0242,0,-147.098 0/1:7:6,1:6:232:1:39:-1.78935,0,-19.1419 0/1:28:22,6:22:848:6:230:-9.44318,0,-68.2137 dDocent_Contig_7756 43 . T C 31.7166 . AB=0.222222;ABP=9.04217;AC=1;AF=0.166667;AN=6;AO=2;CIGAR=1X;DP=26;DPB=26;DPRA=1.05882;EPP=7.35324;EPPR=55.1256;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=78;QR=972;RO=24;RPL=0;RPP=7.35324;RPPR=55.1256;RPR=2;RUN=1;SAF=2;SAP=7.35324;SAR=0;SRF=24;SRP=55.1256;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:9:7,2:7:285:2:78:-4.6942,0,-23.3151 0/0:5:5,0:5:205:0:0:0,-1.50515,-18.835 0/0:12:12,0:12:482:0:0:0,-3.61236,-43.7294 dDocent_Contig_7757 26 . T G 727.528 . AB=0.284404;ABP=47.0175;AC=3;AF=0.5;AN=6;AO=31;CIGAR=1X3M1X;DP=109;DPB=109;DPRA=0;EPP=70.3259;EPPR=170.214;GTI=0;LEN=1;MEANALT=1.33333;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=6.93889e-18;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=1223;QR=3059;RO=77;RPL=0;RPP=70.3259;RPPR=170.214;RPR=31;RUN=1;SAF=31;SAP=70.3259;SAR=0;SRF=77;SRP=170.214;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|1:68:49,19:49:1953:19:757:-47.9848,0,-155.507 0|1:21:17,3:17:669:3:116:-4.45238,0,-54.1898 0|1:20:11,9:11:437:9:350:-25.838,0,-33.6632 dDocent_Contig_7758 7 . T A 1246.98 . AB=0.0526316;ABP=102.098;AC=3;AF=0.5;AN=6;AO=3;CIGAR=1X3M;DP=175;DPB=175;DPRA=0;EPP=9.52472;EPPR=216.525;GTI=0;LEN=1;MEANALT=4;MQM=39.3333;MQMR=52.2727;NS=3;NUMALT=2;ODDS=1.38778e-17;PAIRED=0;PAIREDR=0.245455;PAO=0;PQA=0;PQR=0;PRO=0;QA=97;QR=4163;RO=110;RPL=0;RPP=9.52472;RPPR=241.872;RPR=3;RUN=1;SAF=3;SAP=9.52472;SAR=0;SRF=107;SRP=216.525;SRR=3;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|1:62:43,16,0:43:1626:16,0:614,0:-36.4844,0,-121.264,-49.4287,-126.081,-175.535 0|1:56:32,22,0:32:1214:22,0:826,0:-57.4519,0,-89.037,-67.0848,-95.6596,-162.745 0|1:57:35,15,3:35:1323:15,3:577,97:-36.2841,0,-98.9963,-39.5485,-96.2338,-142.137 dDocent_Contig_7759 69 . C G 79.1922 . AB=0.285714;ABP=8.59409;AC=1;AF=0.166667;AN=6;AO=4;CIGAR=1X;DP=39;DPB=39;DPRA=1.12;EPP=11.6962;EPPR=79.0118;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=151;QR=1266;RO=35;RPL=4;RPP=11.6962;RPPR=79.0118;RPR=0;RUN=1;SAF=4;SAP=11.6962;SAR=0;SRF=35;SRP=79.0118;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:17:17,0:17:618:0:0:0,-5.11751,-55.9524 0/1:14:10,4:10:365:4:151:-9.74312,0,-28.982 0/0:8:8,0:8:283:0:0:0,-2.40824,-25.8119 dDocent_Contig_7760 28 . T A 1392.15 . AB=0.602564;ABP=10.1372;AC=3;AF=0.5;AN=6;AO=47;CIGAR=1X;DP=78;DPB=78;DPRA=0;EPP=105.07;EPPR=70.3259;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=0.935484;PAO=0;PQA=0;PQR=0;PRO=0;QA=1858;QR=1215;RO=31;RPL=0;RPP=105.07;RPPR=70.3259;RPR=47;RUN=1;SAF=47;SAP=105.07;SAR=0;SRF=31;SRP=70.3259;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:24:10,14:10:372:14:559:-43.4283,0,-26.5878 0/1:34:13,21:13:521:21:829:-64.6813,0,-37.0015 0/1:20:8,12:8:322:12:470:-36.6287,0,-23.3259 dDocent_Contig_7761 8 . G A 175.213 . AB=0.230769;ABP=27.5646;AC=2;AF=0.333333;AN=6;AO=9;CIGAR=1X;DP=49;DPB=49;DPRA=1.95;EPP=22.5536;EPPR=89.8692;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=0;PAIREDR=0.65;PAO=0;PQA=0;PQR=0;PRO=0;QA=345;QR=1537;RO=40;RPL=0;RPP=22.5536;RPPR=89.8692;RPR=9;RUN=1;SAF=9;SAP=22.5536;SAR=0;SRF=40;SRP=89.8692;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:21:19,2:19:734:2:74:-0.703804,0,-60.0698 0/0:10:10,0:10:381:0:0:0,-3.0103,-34.6434 0/1:18:11,7:11:422:7:271:-19.3379,0,-32.9144 dDocent_Contig_7762 19 . C T 1148 . AB=0.633333;ABP=12.2752;AC=3;AF=0.5;AN=6;AO=38;CIGAR=1X;DP=60;DPB=60;DPRA=0;EPP=85.5263;EPPR=50.7827;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=1526;QR=855;RO=22;RPL=0;RPP=85.5263;RPPR=50.7827;RPR=38;RUN=1;SAF=38;SAP=85.5263;SAR=0;SRF=22;SRP=50.7827;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:33:9,24:9:358:24:967:-77.3957,0,-22.6456 0/1:8:3,5:3:123:5:203:-16.2448,0,-9.05655 0/1:19:10,9:10:374:9:356:-26.6825,0,-28.2804 dDocent_Contig_7764 75 . T C 670.162 . AB=0.38806;ABP=10.3026;AC=2;AF=0.333333;AN=6;AO=26;CIGAR=1X;DP=70;DPB=70;DPRA=11.1667;EPP=59.4686;EPPR=96.3836;GTI=0;LEN=1;MEANALT=1.5;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=998;QR=1501;RO=43;RPL=26;RPP=59.4686;RPPR=96.3836;RPR=0;RUN=1;SAF=26;SAP=59.4686;SAR=0;SRF=43;SRP=96.3836;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:33:24,9:24:825:9:362:-23.0104,0,-64.6085 0/1:34:16,17:16:574:17:636:-47.5286,0,-41.9528 0/0:3:3,0:3:102:0:0:0,-0.90309,-9.51695 dDocent_Contig_7765 28 . C A 1444.83 . AB=0.295;ABP=76.0152;AC=3;AF=0.5;AN=6;AO=59;CIGAR=1X;DP=200;DPB=200;DPRA=0;EPP=114.344;EPPR=259.29;GTI=0;LEN=1;MEANALT=1;MQM=59.3898;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=0.932203;PAIREDR=0.914894;PAO=0;PQA=0;PQR=0;PRO=0;QA=2326;QR=5655;RO=141;RPL=0;RPP=131.127;RPPR=309.188;RPR=59;RUN=1;SAF=57;SAP=114.344;SAR=2;SRF=135;SRP=259.29;SRR=6;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:150:104,46:104:4173:46:1808:-117.736,0,-330.372 0/1:12:6,6:6:242:6:239:-18.2713,0,-18.5452 0/1:38:31,7:31:1240:7:279:-13.9983,0,-100.433 dDocent_Contig_7766 11 . A T 124.322 . AB=0.333333;ABP=6.62942;AC=1;AF=0.166667;AN=6;AO=5;CIGAR=1X2M2X2M1X;DP=35;DPB=35;DPRA=1.5;EPP=13.8677;EPPR=65.983;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=1.73472e-18;PAIRED=1;PAIREDR=0.862069;PAO=0;PQA=0;PQR=0;PRO=0;QA=201;QR=1155;RO=29;RPL=0;RPP=13.8677;RPPR=65.983;RPR=5;RUN=1;SAF=5;SAP=13.8677;SAR=0;SRF=29;SRP=65.983;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|1:15:10,5:10:401:5:201:-13.9551,0,-31.935 0|0:10:10,0:10:391:0:0:0,-3.0103,-35.5455 0|0:10:9,0:9:363:0:0:0,-2.70927,-32.6439 dDocent_Contig_7768 107 . N T 66.4848 . AB=0;ABP=0;AC=2;AF=1;AN=2;AO=2;CIGAR=1X;DP=2;DPB=2;DPRA=0;EPP=7.35324;EPPR=0;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=0;NS=1;NUMALT=1;ODDS=5.99146;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=70;QR=0;RO=0;RPL=0;RPP=7.35324;RPPR=0;RPR=2;RUN=1;SAF=0;SAP=7.35324;SAR=2;SRF=0;SRP=0;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL ./.:.:.:.:.:.:.:. ./.:.:.:.:.:.:.:. 1/1:2:0,2:0:0:2:70:-6.6474,-0.60206,0 dDocent_Contig_7771 7 . T A 163.89 . AB=0.152381;ABP=113.218;AC=3;AF=0.5;AN=6;AO=16;CIGAR=1X;DP=105;DPB=105;DPRA=0;EPP=37.7539;EPPR=196.271;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=583;QR=3406;RO=89;RPL=0;RPP=37.7539;RPPR=196.271;RPR=16;RUN=1;SAF=16;SAP=37.7539;SAR=0;SRF=89;SRP=196.271;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:62:53,9:53:2022:9:321:-10.5589,0,-163.554 0/1:4:2,2:2:74:2:70:-5.443,0,-5.82176 0/1:39:34,5:34:1310:5:192:-5.90984,0,-106.449 dDocent_Contig_7772 7 . T G 771.746 . AB=0.292517;ABP=57.9766;AC=3;AF=0.5;AN=6;AO=43;CIGAR=1X2M;DP=147;DPB=147;DPRA=0;EPP=96.3836;EPPR=204.957;GTI=0;LEN=1;MEANALT=2.33333;MQM=58.9535;MQMR=60;NS=3;NUMALT=2;ODDS=1.38778e-17;PAIRED=0.953488;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=1378;QR=3544;RO=93;RPL=0;RPP=96.3836;RPPR=204.957;RPR=43;RUN=1;SAF=43;SAP=96.3836;SAR=0;SRF=93;SRP=204.957;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|1:89:62,3,23:62:2357:3,23:110,694:-36.4382,-46.1027,-238.569,0,-184.388,-186.455 0|1:17:7,3,7:7:265:3,7:82,265:-19.6921,-15.3556,-36.1779,0,-15.3551,-19.6917 0|1:41:24,4,13:24:922:4,13:121,419:-26.5672,-24.1129,-98.6383,0,-66.0873,-71.8459 dDocent_Contig_7773 50 . T C 1173.64 . AB=0.634921;ABP=12.9715;AC=2;AF=0.333333;AN=6;AO=40;CIGAR=1X;DP=69;DPB=69;DPRA=5.25;EPP=89.8692;EPPR=65.983;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=1547;QR=1034;RO=29;RPL=40;RPP=89.8692;RPPR=65.983;RPR=0;RUN=1;SAF=40;SAP=89.8692;SAR=0;SRF=29;SRP=65.983;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:40:16,24:16:559:24:944:-73.2189,0,-38.5859 0/0:6:6,0:6:222:0:0:0,-1.80618,-20.3358 0/1:23:7,16:7:253:16:603:-47.6676,0,-16.1946 dDocent_Contig_7774 29 . T A 3022.77 . AB=0.705036;ABP=53.7665;AC=3;AF=0.5;AN=6;AO=98;CIGAR=1X;DP=139;DPB=139;DPRA=0;EPP=215.815;EPPR=92.0407;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=3875;QR=1642;RO=41;RPL=0;RPP=215.815;RPPR=92.0407;RPR=98;RUN=1;SAF=98;SAP=215.815;SAR=0;SRF=41;SRP=92.0407;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:63:13,50:13:522:50:1975:-158.984,0,-28.3605 0/1:18:2,16:2:80:16:636:-52.1557,0,-2.17325 0/1:58:26,32:26:1040:32:1264:-96.572,0,-76.433 dDocent_Contig_7775 12 . A T 462.786 . AB=0.3;ABP=16.9077;AC=2;AF=0.333333;AN=6;AO=12;CIGAR=3X1M1X;DP=40;DPB=40;DPRA=0;EPP=29.068;EPPR=37.7539;GTI=0;LEN=1;MEANALT=2.33333;MQM=59.5833;MQMR=60;NS=3;NUMALT=2;ODDS=0;PAIRED=0.5;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=474;QR=626;RO=16;RPL=0;RPP=29.068;RPPR=37.7539;RPR=12;RUN=1;SAF=12;SAP=29.068;SAR=0;SRF=16;SRP=37.7539;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|1:17:8,5,3:8:315:5,3:194,119:-13.5586,0,-24.4445,-6.1557,-16.1468,-31.1898 1|0:9:0,4,5:0:0:4,5:160,205:-30.4989,-17.3299,-16.1257,-13.5729,0,-12.0677 0|0:14:8,3,3:8:311:3,3:120,122:-7.6583,-0.184591,-24.8209,0,-15.6559,-24.6411 dDocent_Contig_7776 48 . T C 36.0498 . AB=0.166667;ABP=20.3821;AC=1;AF=0.25;AN=4;AO=3;CIGAR=1X;DP=35;DPB=35;DPRA=1.05882;EPP=9.52472;EPPR=72.4974;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=2;NUMALT=1;ODDS=0;PAIRED=0;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=115;QR=1285;RO=32;RPL=3;RPP=9.52472;RPPR=72.4974;RPR=0;RUN=1;SAF=0;SAP=9.52472;SAR=3;SRF=32;SRP=72.4974;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:18:15,3:15:606:3:115:-5.30384,0,-49.4588 ./.:.:.:.:.:.:.:. 0/0:17:17,0:17:679:0:0:0,-5.11751,-61.4405 dDocent_Contig_7777 142 . T C 172.883 . AB=0.236842;ABP=25.8679;AC=3;AF=0.5;AN=6;AO=9;CIGAR=1X;DP=38;DPB=38;DPRA=0;EPP=22.5536;EPPR=65.983;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=359;QR=1156;RO=29;RPL=0;RPP=22.5536;RPPR=65.983;RPR=9;RUN=1;SAF=0;SAP=22.5536;SAR=9;SRF=0;SRP=65.983;SRR=29;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:25:21,4:21:837:4:163:-7.53268,0,-68.1168 0/1:5:1,4:1:38:4:159:-13.1868,0,-2.29212 0/1:8:7,1:7:281:1:37:-1.28959,0,-23.2534 dDocent_Contig_7779 20 . T C 126.893 . AB=0.352941;ABP=9.39698;AC=2;AF=0.333333;AN=6;AO=12;CIGAR=1X;DP=39;DPB=39;DPRA=3.4;EPP=29.068;EPPR=61.6401;GTI=0;LEN=1;MEANALT=1;MQM=24.1667;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=0;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=484;QR=1092;RO=27;RPL=0;RPP=29.068;RPPR=61.6401;RPR=12;RUN=1;SAF=12;SAP=29.068;SAR=0;SRF=27;SRP=61.6401;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:20:14,6:14:562:6:240:-6.66251,0,-44.8997 0/1:14:8,6:8:327:6:244:-9.5496,0,-25.5857 0/0:5:5,0:5:203:0:0:0,-1.50515,-18.6531 dDocent_Contig_7780 120 . C A 687.231 . AB=0.345794;ABP=25.1106;AC=3;AF=0.5;AN=6;AO=37;CIGAR=1X;DP=107;DPB=107;DPRA=0;EPP=83.3548;EPPR=152.842;GTI=0;LEN=1;MEANALT=1.33333;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=1170;QR=2174;RO=69;RPL=0;RPP=83.3548;RPPR=152.842;RPR=37;RUN=1;SAF=0;SAP=83.3548;SAR=37;SRF=0;SRP=152.842;SRR=69;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:77:46,30:46:1527:30:946:-62.4729,0,-114.764 0/1:10:6,4:6:197:4:119:-7.99514,0,-15.0424 0/1:20:17,3:17:450:3:105:-3.77549,0,-34.7337 dDocent_Contig_7781 21 . C T 480.669 . AB=0.548387;ABP=3.64073;AC=2;AF=0.333333;AN=6;AO=17;CIGAR=1X;DP=58;DPB=58;DPRA=0.574074;EPP=39.9253;EPPR=92.0407;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=669;QR=1624;RO=41;RPL=0;RPP=39.9253;RPPR=92.0407;RPR=17;RUN=1;SAF=17;SAP=39.9253;SAR=0;SRF=41;SRP=92.0407;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:19:7,12:7:279:12:478:-37.6462,0,-19.7607 0/1:12:7,5:7:275:5:191:-13.9435,0,-21.5048 0/0:27:27,0:27:1070:0:0:0,-8.12781,-96.5883 dDocent_Contig_7782 7 . T C 229.927 . AB=0.222222;ABP=39.2015;AC=2;AF=0.333333;AN=6;AO=12;CIGAR=1X;DP=56;DPB=56;DPRA=13.5;EPP=29.068;EPPR=98.5551;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=467;QR=1694;RO=44;RPL=0;RPP=29.068;RPPR=98.5551;RPR=12;RUN=1;SAF=12;SAP=29.068;SAR=0;SRF=44;SRP=98.5551;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:34:29,5:29:1123:5:194:-7.59782,0,-91.1366 0/0:2:2,0:2:78:0:0:0,-0.60206,-7.40347 0/1:20:13,7:13:493:7:273:-18.9174,0,-38.6933 dDocent_Contig_7783 10 . A T 47.3687 . AB=0.12;ABP=65.7224;AC=1;AF=0.166667;AN=6;AO=6;CIGAR=1X;DP=192;DPB=192;DPRA=0.704225;EPP=16.0391;EPPR=406.904;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=59.7634;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=0.994624;PAO=0;PQA=0;PQR=0;PRO=0;QA=236;QR=7209;RO=186;RPL=0;RPP=16.0391;RPPR=406.904;RPR=6;RUN=1;SAF=6;SAP=16.0391;SAR=0;SRF=186;SRP=406.904;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:123:123,0:123:4747:0:0:0,-37.0267,-427.236 0/0:19:19,0:19:741:0:0:0,-5.71957,-67.0153 0/1:50:44,6:44:1721:6:236:-6.56078,0,-139.41 dDocent_Contig_7784 178 . T G 195.702 . AB=0.261905;ABP=23.691;AC=3;AF=0.5;AN=6;AO=11;CIGAR=1X;DP=42;DPB=42;DPRA=0;EPP=26.8965;EPPR=70.3259;GTI=0;LEN=1;MEANALT=1;MQM=39.3636;MQMR=60;NS=3;NUMALT=1;ODDS=3.46945e-18;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=432;QR=1252;RO=31;RPL=11;RPP=26.8965;RPPR=70.3259;RPR=0;RUN=1;SAF=0;SAP=26.8965;SAR=11;SRF=0;SRP=70.3259;SRR=31;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:24:17,7:17:686:7:280:-16.402,0,-54.8451 0/1:6:5,1:5:204:1:33:-1.1929,0,-16.9379 0/1:12:9,3:9:362:3:119:-6.66908,0,-29.3318 dDocent_Contig_7785 34 . A G 81.3576 . AB=0.6;ABP=3.44459;AC=1;AF=0.166667;AN=6;AO=10;CIGAR=1X;DP=114;DPB=114;DPRA=0;EPP=24.725;EPPR=228.843;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=404;QR=4119;RO=104;RPL=0;RPP=24.725;RPPR=228.843;RPR=10;RUN=1;SAF=10;SAP=24.725;SAR=0;SRF=104;SRP=228.843;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:81:75,6:75:2973:6:240:0,-2.40849,-245.701 0/1:5:2,3:2:77:3:123:-9.95964,0,-5.80305 0/0:28:27,1:27:1069:1:41:0,-4.33427,-92.406 dDocent_Contig_7787 17 . G A 113.968 . AB=0.230769;ABP=19.3799;AC=2;AF=0.333333;AN=6;AO=6;CIGAR=1X;DP=43;DPB=43;DPRA=0.764706;EPP=16.0391;EPPR=83.3548;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=244;QR=1472;RO=37;RPL=0;RPP=16.0391;RPPR=83.3548;RPR=6;RUN=1;SAF=6;SAP=16.0391;SAR=0;SRF=37;SRP=83.3548;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:19:15,4:15:605:4:162:-9.24718,0,-49.0688 0/0:17:17,0:17:663:0:0:0,-5.11751,-59.9986 0/1:7:5,2:5:204:2:82:-5.67247,0,-16.6368 dDocent_Contig_7789 40 . A G 759.213 . AB=0.41791;ABP=6.93191;AC=3;AF=0.5;AN=6;AO=28;CIGAR=1X;DP=67;DPB=67;DPRA=0;EPP=63.8115;EPPR=87.6977;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=3.46945e-18;PAIRED=0.964286;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=1117;QR=1491;RO=39;RPL=0;RPP=63.8115;RPPR=87.6977;RPR=28;RUN=1;SAF=28;SAP=63.8115;SAR=0;SRF=39;SRP=87.6977;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:23:17,6:17:654:6:239:-14.9606,0,-52.2663 0/1:7:2,5:2:71:5:199:-16.1808,0,-4.63387 0/1:37:20,17:20:766:17:679:-50.3025,0,-58.1261 dDocent_Contig_7790 15 . A G 3838.88 . AB=0.0742049;ABP=448.669;AC=0;AF=0;AN=6;AO=21;CIGAR=1X6M1X7M1D4M2X;DP=283;DPB=275.864;DPRA=0;EPP=48.6112;EPPR=87.6977;GTI=0;LEN=1;MEANALT=9.33333;MQM=60;MQMR=60;NS=3;NUMALT=6;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=770;QR=1520;RO=39;RPL=0;RPP=48.6112;RPPR=87.6977;RPR=21;RUN=1;SAF=21;SAP=48.6112;SAR=0;SRF=39;SRP=87.6977;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|0:179:20,25,15,71,6,18,14:20:780:25,15,71,6,18,14:935,564,2737,237,655,526:-231.171,-160.631,-217.22,-190.993,-178.548,-250.593,-12.4437,0,-30.362,-55.1876,-217.688,-205.243,-235.605,-57.0571,-279.998,-183.705,-171.26,-201.622,-23.0752,-228.317,-242.402,-194.1,-181.655,-212.017,-33.4697,-238.713,-204.73,-254.002 0|0:16:4,0,0,5,2,1,1:4:157:0,0,5,2,1,1:0,0,197,80,35,38:-15.0077,-16.2118,-29.1254,-16.2118,-29.1254,-29.1254,0,-12.9155,-12.9155,-11.4104,-9.61934,-22.5337,-22.5337,-6.32255,-21.9317,-13.3675,-26.2803,-26.2803,-10.0715,-19.6889,-25.9793,-13.0961,-26.0095,-26.0095,-9.79973,-19.4178,-23.1646,-25.7085 0|0:88:15,2,10,46,0,0,6:15:583:2,10,46,0,0,6:72,395,1797,0,0,206:-143.232,-141.874,-189.179,-115.241,-157.275,-160.138,0,-42.0408,-15.4033,-34.0668,-147.747,-189.781,-163.149,-47.9142,-195.654,-147.747,-189.781,-163.149,-47.9142,-195.654,-195.654,-131.028,-173.061,-146.429,-31.1963,-178.934,-178.934,-177.128 dDocent_Contig_7792 60 . A G 99.632 . AB=0.358491;ABP=12.2288;AC=3;AF=0.5;AN=6;AO=19;CIGAR=2X3M2X;DP=53;DPB=53;DPRA=0;EPP=44.2683;EPPR=72.4974;GTI=0;LEN=1;MEANALT=1.66667;MQM=17.5789;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=0;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=707;QR=1215;RO=32;RPL=19;RPP=44.2683;RPPR=72.4974;RPR=0;RUN=1;SAF=19;SAP=44.2683;SAR=0;SRF=32;SRP=72.4974;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|1:30:16,12:16:609:12:448:-9.47318,0,-46.4924 0|1:16:11,5:11:426:5:187:-3.96926,0,-33.8765 0|1:7:5,2:5:180:2:72:-1.48628,0,-14.443 dDocent_Contig_7793 13 . C G 469.099 . AB=0.27027;ABP=36.9322;AC=2;AF=0.333333;AN=6;AO=20;CIGAR=1X;DP=78;DPB=78;DPRA=9.25;EPP=46.4397;EPPR=128.956;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=800;QR=2333;RO=58;RPL=0;RPP=46.4397;RPPR=128.956;RPR=20;RUN=1;SAF=20;SAP=46.4397;SAR=0;SRF=58;SRP=128.956;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:57:41,16:41:1659:16:643:-41.0423,0,-132.375 0/0:4:4,0:4:163:0:0:0,-1.20412,-15.0584 0/1:17:13,4:13:511:4:157:-9.39038,0,-41.2186 dDocent_Contig_7794 13 . G T 99.0839 . AB=0.333333;ABP=5.18177;AC=1;AF=0.166667;AN=6;AO=3;CIGAR=1X3M1X;DP=48;DPB=48;DPRA=0;EPP=9.52472;EPPR=89.8692;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=2;ODDS=3.46945e-18;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=117;QR=1585;RO=40;RPL=0;RPP=9.52472;RPPR=89.8692;RPR=3;RUN=1;SAF=3;SAP=9.52472;SAR=0;SRF=40;SRP=89.8692;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|0:27:24,0,3:24:951:0,3:0,123:-3.33698,-10.5617,-88.8225,0,-78.6687,-77.7656 0|0:12:10,0,2:10:395:0,2:0,79:-3.88488,-6.89518,-39.3971,0,-32.8965,-32.2944 0|1:9:6,3,0:6:239:3,0:117,0:-8.20094,0,-19.1757,-10.0071,-20.0788,-29.6935 dDocent_Contig_7795 54 . C T 225.442 . AB=0.191176;ABP=59.3408;AC=3;AF=0.5;AN=6;AO=13;CIGAR=1X;DP=68;DPB=68;DPRA=0;EPP=31.2394;EPPR=122.441;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=526;QR=2174;RO=55;RPL=13;RPP=31.2394;RPPR=122.441;RPR=0;RUN=1;SAF=13;SAP=31.2394;SAR=0;SRF=55;SRP=122.441;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:46:38,8:38:1499:8:323:-15.5912,0,-121.305 0/1:17:13,4:13:512:4:163:-9.94092,0,-41.3072 0/1:5:4,1:4:163:1:40:-2.49053,0,-13.5533 dDocent_Contig_7796 20 . T C 52.5262 . AB=0.3;ABP=6.48466;AC=2;AF=0.333333;AN=6;AO=3;CIGAR=1X;DP=19;DPB=19;DPRA=0.555556;EPP=9.52472;EPPR=37.7539;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=0;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=122;QR=640;RO=16;RPL=0;RPP=9.52472;RPPR=37.7539;RPR=3;RUN=1;SAF=3;SAP=9.52472;SAR=0;SRF=16;SRP=37.7539;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:9:9,0:9:357:0:0:0,-2.70927,-32.4889 0/1:2:1,1:1:41:1:40:-3.39362,0,-3.49251 0/1:8:6,2:6:242:2:82:-5.37144,0,-19.7482 dDocent_Contig_7797 48 . T A 4732.59 . AB=0.849711;ABP=186.782;AC=3;AF=0.5;AN=6;AO=147;CIGAR=1X;DP=173;DPB=173;DPRA=0;EPP=322.217;EPPR=59.4686;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=5892;QR=1039;RO=26;RPL=0;RPP=322.217;RPPR=59.4686;RPR=147;RUN=1;SAF=147;SAP=322.217;SAR=0;SRF=26;SRP=59.4686;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:101:14,87:14:555:87:3495:-284.177,0,-19.8863 0/1:15:5,10:5:200:10:401:-31.9346,0,-13.8636 0/1:57:7,50:7:284:50:1996:-162.671,0,-8.77528 dDocent_Contig_7798 106 . N A 68.3772 . AB=0;ABP=0;AC=2;AF=1;AN=2;AO=2;CIGAR=2X;DP=2;DPB=2;DPRA=0;EPP=7.35324;EPPR=0;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=0;NS=1;NUMALT=1;ODDS=5.99146;PAIRED=1;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=72;QR=0;RO=0;RPL=0;RPP=7.35324;RPPR=0;RPR=2;RUN=1;SAF=2;SAP=7.35324;SAR=0;SRF=0;SRP=0;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 1|1:2:0,2:0:0:2:72:-6.83664,-0.60206,0 .:.:.:.:.:.:.:. .:.:.:.:.:.:.:. dDocent_Contig_7799 8 . G C 52.8937 . AB=0.25;ABP=9.52472;AC=1;AF=0.166667;AN=6;AO=3;CIGAR=1X;DP=72;DPB=72;DPRA=0.4;EPP=9.52472;EPPR=152.842;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=115;QR=2626;RO=69;RPL=0;RPP=9.52472;RPPR=152.842;RPR=3;RUN=1;SAF=3;SAP=9.52472;SAR=0;SRF=69;SRP=152.842;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:59:59,0:59:2246:0:0:0,-17.7608,-202.358 0/0:1:1,0:1:39:0:0:0,-0.30103,-3.89656 0/1:12:9,3:9:341:3:115:-7.11253,0,-27.4317 dDocent_Contig_7800 29 . G C 72.7826 . AB=0.113924;ABP=105.289;AC=1;AF=0.166667;AN=6;AO=10;CIGAR=1X2M1X;DP=144;DPB=144;DPRA=1.75;EPP=24.725;EPPR=293.988;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=397;QR=5318;RO=134;RPL=0;RPP=24.725;RPPR=293.988;RPR=10;RUN=1;SAF=10;SAP=24.725;SAR=0;SRF=134;SRP=293.988;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|1:79:70,9:70:2785:9:358:-8.80114,0,-226.994 0|0:32:32,0:32:1259:0:0:0,-9.63296,-113.587 0|0:33:32,1:32:1274:1:39:0,-6.03743,-111.037 dDocent_Contig_7801 17 . G A 1502.17 . AB=0.171429;ABP=35.8306;AC=0;AF=0;AN=6;AO=6;CIGAR=1X1M1X;DP=74;DPB=74;DPRA=7;EPP=16.0391;EPPR=44.2683;GTI=0;LEN=1;MEANALT=2;MQM=60;MQMR=60;NS=3;NUMALT=2;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=232;QR=742;RO=19;RPL=0;RPP=16.0391;RPPR=44.2683;RPR=6;RUN=1;SAF=6;SAP=16.0391;SAR=0;SRF=19;SRP=44.2683;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|0:35:12,6,17:12:465:6,17:232,661:-50.7069,-35.269,-71.6606,0,-19.1483,-33.0814 0|0:5:0,0,5:0:0:0,5:0,197:-18.1066,-18.1066,-18.1066,-1.50515,-1.50515,0 0|0:34:7,0,27:7:277:0,27:0,1054:-84.9268,-87.034,-109.833,0,-23.1933,-15.0655 dDocent_Contig_7803 8 . G A 34.725 . AB=0.285714;ABP=5.80219;AC=1;AF=0.166667;AN=6;AO=3;CIGAR=1X;DP=207;DPB=207;DPRA=1.38182;EPP=9.52472;EPPR=443.819;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=117;QR=7719;RO=203;RPL=0;RPP=9.52472;RPPR=443.819;RPR=3;RUN=1;SAF=3;SAP=9.52472;SAR=0;SRF=203;SRP=443.819;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:145:144,1:144:5478:1:39:0,-39.7528,-489.102 0/1:7:5,2:5:195:2:78:-5.29626,0,-15.817 0/0:55:54,0:54:2046:0:0:0,-16.2556,-184.106 dDocent_Contig_7804 72 . T C 48.9471 . AB=0.214286;ABP=12.937;AC=1;AF=0.166667;AN=6;AO=3;CIGAR=1X;DP=29;DPB=29;DPRA=1.86667;EPP=9.52472;EPPR=59.4686;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=114;QR=953;RO=26;RPL=3;RPP=9.52472;RPPR=59.4686;RPR=0;RUN=1;SAF=3;SAP=9.52472;SAR=0;SRF=26;SRP=59.4686;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:14:11,3:11:423:3:114:-6.41756,0,-34.2092 0/0:9:9,0:9:310:0:0:0,-2.70927,-28.2317 0/0:6:6,0:6:220:0:0:0,-1.80618,-20.1555 dDocent_Contig_7805 43 . A C 82.3807 . AB=0.166667;ABP=8.80089;AC=3;AF=0.5;AN=6;AO=3;CIGAR=1X;DP=19;DPB=19;DPRA=0.363636;EPP=9.52472;EPPR=37.7539;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=8.67362e-19;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=119;QR=641;RO=16;RPL=0;RPP=9.52472;RPPR=37.7539;RPR=3;RUN=1;SAF=3;SAP=9.52472;SAR=0;SRF=16;SRP=37.7539;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:11:11,0:11:447:0:0:0,-3.31133,-40.5861 1/1:2:0,2:0:0:2:78:-7.40347,-0.60206,0 0/1:6:5,1:5:194:1:41:-2.28839,0,-16.0252 dDocent_Contig_7806 77 . A G 181.964 . AB=0.107143;ABP=78.0812;AC=3;AF=0.5;AN=6;AO=10;CIGAR=1X;DP=104;DPB=104;DPRA=0.681818;EPP=24.725;EPPR=207.129;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=0.978723;PAO=0;PQA=0;PQR=0;PRO=0;QA=398;QR=3687;RO=94;RPL=10;RPP=24.725;RPPR=207.129;RPR=0;RUN=1;SAF=10;SAP=24.725;SAR=0;SRF=94;SRP=207.129;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:56:50,6:50:1991:6:238:-4.93556,0,-162.518 1/1:4:0,4:0:0:4:160:-14.7834,-1.20412,0 0/0:44:44,0:44:1696:0:0:0,-13.2453,-152.899 dDocent_Contig_7808 166 . A C 824.923 . AB=0.583333;ABP=5.9056;AC=3;AF=0.5;AN=6;AO=28;CIGAR=1X;DP=48;DPB=48;DPRA=0;EPP=63.8115;EPPR=46.4397;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=1112;QR=782;RO=20;RPL=28;RPP=63.8115;RPPR=46.4397;RPR=0;RUN=1;SAF=0;SAP=63.8115;SAR=28;SRF=0;SRP=46.4397;SRR=20;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:22:2,20:2:77:20:802:-65.8732,0,-0.686173 0/1:14:11,3:11:426:3:117:-6.69487,0,-34.4774 0/1:12:7,5:7:279:5:193:-14.1264,0,-21.869 dDocent_Contig_7809 104 . N A 88.6452 . AB=0;ABP=0;AC=2;AF=1;AN=2;AO=3;CIGAR=4X3M1X;DP=3;DPB=3;DPRA=0;EPP=9.52472;EPPR=0;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=0;NS=1;NUMALT=1;ODDS=6.68461;PAIRED=1;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=95;QR=0;RO=0;RPL=0;RPP=9.52472;RPPR=0;RPR=3;RUN=1;SAF=0;SAP=9.52472;SAR=3;SRF=0;SRP=0;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 1|1:3:0,3:0:0:3:95:-8.86398,-0.90309,0 .:.:.:.:.:.:.:. .:.:.:.:.:.:.:. dDocent_Contig_7810 156 . T C 448.287 . AB=0.395349;ABP=7.10075;AC=2;AF=0.333333;AN=6;AO=17;CIGAR=1X;DP=47;DPB=47;DPRA=5.375;EPP=39.9253;EPPR=68.1545;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=673;QR=1193;RO=30;RPL=0;RPP=39.9253;RPPR=68.1545;RPR=17;RUN=1;SAF=0;SAP=39.9253;SAR=17;SRF=0;SRP=68.1545;SRR=30;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:19:17,2:17:675:2:79:-1.77806,0,-55.3609 0/0:4:4,0:4:156:0:0:0,-1.20412,-14.4155 0/1:24:9,15:9:362:15:594:-46.5734,0,-25.7193 dDocent_Contig_7812 72 . T C 412.42 . AB=0.395349;ABP=7.10075;AC=4;AF=0.666667;AN=6;AO=20;CIGAR=1X;DP=46;DPB=46;DPRA=0;EPP=46.4397;EPPR=59.4686;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=631;QR=856;RO=26;RPL=20;RPP=46.4397;RPPR=59.4686;RPR=0;RUN=1;SAF=20;SAP=46.4397;SAR=0;SRF=26;SRP=59.4686;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:24:13,11:13:421:11:357:-25.2217,0,-30.9773 1/1:3:0,3:0:0:3:91:-8.49124,-0.90309,0 0/1:19:13,6:13:435:6:183:-11.0518,0,-33.7523 dDocent_Contig_7814 15 . T A 1100.72 . AB=0.627119;ABP=11.2913;AC=3;AF=0.5;AN=6;AO=37;CIGAR=1X;DP=59;DPB=59;DPRA=0;EPP=83.3548;EPPR=50.7827;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=1470;QR=892;RO=22;RPL=0;RPP=83.3548;RPPR=50.7827;RPR=37;RUN=1;SAF=37;SAP=83.3548;SAR=0;SRF=22;SRP=50.7827;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:28:14,14:14:567:14:562:-42.494,0,-42.9431 0/1:5:3,2:3:122:2:82:-6.27453,0,-9.86734 0/1:26:5,21:5:203:21:826:-66.8267,0,-10.8263 dDocent_Contig_7815 8 . G T 236.263 . AB=0.133333;ABP=213.209;AC=3;AF=0.5;AN=6;AO=24;CIGAR=1X;DP=180;DPB=180;DPRA=0;EPP=55.1256;EPPR=341.76;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=895;QR=5896;RO=156;RPL=0;RPP=55.1256;RPPR=341.76;RPR=24;RUN=1;SAF=24;SAP=55.1256;SAR=0;SRF=156;SRP=341.76;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:88:73,15:73:2728:15:547:-23.0683,0,-219.212 0/1:46:42,4:42:1584:4:153:-0.29423,0,-128.982 0/1:46:41,5:41:1584:5:195:-4.07682,0,-128.981 dDocent_Contig_7816 30 . C T 200.232 . AB=0.4;ABP=4.74748;AC=2;AF=0.333333;AN=6;AO=8;CIGAR=1X;DP=22;DPB=22;DPRA=5;EPP=20.3821;EPPR=33.4109;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=1.73472e-18;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=320;QR=547;RO=14;RPL=0;RPP=20.3821;RPPR=33.4109;RPR=8;RUN=1;SAF=8;SAP=20.3821;SAR=0;SRF=14;SRP=33.4109;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:2:2,0:2:71:0:0:0,-0.60206,-6.73943 0/1:9:6,3:6:232:3:119:-8.38612,0,-18.5384 0/1:11:6,5:6:244:5:201:-15.1596,0,-19.0275 dDocent_Contig_7818 15 . G A 66.13 . AB=0.173913;ABP=24.253;AC=1;AF=0.166667;AN=6;AO=5;CIGAR=1X;DP=42;DPB=42;DPRA=3.7;EPP=13.8677;EPPR=83.3548;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=204;QR=1474;RO=37;RPL=0;RPP=13.8677;RPPR=83.3548;RPR=5;RUN=1;SAF=5;SAP=13.8677;SAR=0;SRF=37;SRP=83.3548;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:23:19,4:19:756:4:163:-8.13474,0,-61.4367 0/0:5:5,0:5:202:0:0:0,-1.50515,-18.5621 0/0:14:13,1:13:516:1:41:0,-0.119853,-42.6854 dDocent_Contig_7819 119 . T C 175.273 . AB=0.27027;ABP=19.9713;AC=2;AF=0.333333;AN=6;AO=10;CIGAR=1X;DP=38;DPB=38;DPRA=18.5;EPP=24.725;EPPR=63.8115;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=350;QR=920;RO=28;RPL=0;RPP=24.725;RPPR=63.8115;RPR=10;RUN=1;SAF=0;SAP=24.725;SAR=10;SRF=0;SRP=63.8115;SRR=28;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:16:13,3:13:448:3:105:-4.97968,0,-35.8333 0/0:1:1,0:1:35:0:0:0,-0.30103,-3.49863 0/1:21:14,7:14:437:7:245:-16.0696,0,-33.3083 dDocent_Contig_7820 9 . G A 159.018 . AB=0.296296;ABP=12.7417;AC=2;AF=0.5;AN=4;AO=8;CIGAR=1X;DP=27;DPB=27;DPRA=0;EPP=20.3821;EPPR=44.2683;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=2;NUMALT=1;ODDS=0;PAIRED=0.75;PAIREDR=0.631579;PAO=0;PQA=0;PQR=0;PRO=0;QA=300;QR=726;RO=19;RPL=0;RPP=20.3821;RPPR=44.2683;RPR=8;RUN=1;SAF=8;SAP=20.3821;SAR=0;SRF=19;SRP=44.2683;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:13:9,4:9:348:4:146:-9.58176,0,-27.767 ./.:.:.:.:.:.:.:. 0/1:14:10,4:10:378:4:154:-10.019,0,-30.1552 dDocent_Contig_7821 31 . C T 1278.28 . AB=0.516667;ABP=3.15506;AC=4;AF=0.666667;AN=6;AO=42;CIGAR=1X;DP=71;DPB=71;DPRA=0;EPP=94.2121;EPPR=65.983;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=1649;QR=1143;RO=29;RPL=0;RPP=94.2121;RPPR=65.983;RPR=42;RUN=1;SAF=42;SAP=94.2121;SAR=0;SRF=29;SRP=65.983;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:36:12,24:12:468:24:943:-74.3296,0,-31.6298 1/1:11:0,11:0:0:11:444:-40.3152,-3.31133,0 0/1:24:17,7:17:675:7:262:-16.7059,0,-53.8557 dDocent_Contig_7822 47 . T C 969.299 . AB=0.447368;ABP=4.83891;AC=2;AF=0.333333;AN=6;AO=34;CIGAR=1X;DP=78;DPB=78;DPRA=19;EPP=76.8404;EPPR=98.5551;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=1363;QR=1719;RO=44;RPL=0;RPP=76.8404;RPPR=98.5551;RPR=34;RUN=1;SAF=34;SAP=76.8404;SAR=0;SRF=44;SRP=98.5551;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:53:34,19:34:1315:19:756:-52.4081,0,-102.661 0/0:2:2,0:2:80:0:0:0,-0.60206,-7.59157 0/1:23:8,15:8:324:15:607:-48.0444,0,-22.6057 dDocent_Contig_7823 108 . A G 1260.97 . AB=0.588889;ABP=9.18693;AC=3;AF=0.5;AN=6;AO=53;CIGAR=1X;DP=90;DPB=90;DPRA=0;EPP=118.098;EPPR=81.1833;GTI=0;LEN=1;MEANALT=1.33333;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=1751;QR=1226;RO=36;RPL=0;RPP=118.098;RPPR=81.1833;RPR=53;RUN=1;SAF=0;SAP=118.098;SAR=53;SRF=0;SRP=81.1833;SRR=36;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:64:26,37:26:883:37:1214:-90.4715,0,-60.6987 0/1:6:2,4:2:67:4:128:-10.0308,0,-4.55686 0/1:20:8,12:8:276:12:409:-31.1175,0,-19.1554 dDocent_Contig_7824 109 . T G 107.254 . AB=0.2;ABP=10.8276;AC=3;AF=0.5;AN=6;AO=5;CIGAR=1X;DP=18;DPB=18;DPRA=1.3;EPP=13.8677;EPPR=31.2394;GTI=0;LEN=1;MEANALT=1;MQM=48.4;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=0;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=173;QR=459;RO=13;RPL=0;RPP=13.8677;RPPR=31.2394;RPR=5;RUN=1;SAF=0;SAP=13.8677;SAR=5;SRF=0;SRP=31.2394;SRR=13;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:5:5,0:5:180:0:0:0,-1.50515,-16.5521 1/1:3:0,3:0:0:3:103:-9.61002,-0.90309,0 0/1:10:8,2:8:279:2:70:-2.60336,0,-22.4378 dDocent_Contig_7826 12 . T C 1133.2 . AB=0.366667;ABP=21.5402;AC=2;AF=0.333333;AN=6;AO=44;CIGAR=1X;DP=125;DPB=125;DPRA=12;EPP=98.5551;EPPR=178.9;GTI=0;LEN=1;MEANALT=1;MQM=59.7273;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=0.977273;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=1693;QR=2970;RO=81;RPL=0;RPP=98.5551;RPPR=178.9;RPR=44;RUN=1;SAF=44;SAP=98.5551;SAR=0;SRF=81;SRP=178.9;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:84:54,30:54:1969:30:1148:-78.2854,0,-152.175 0/0:5:5,0:5:189:0:0:0,-1.50515,-17.3756 0/1:36:22,14:22:812:14:545:-38.5578,0,-62.5599 dDocent_Contig_7827 123 . G T 74.3771 . AB=0.217391;ABP=18.9659;AC=1;AF=0.166667;AN=6;AO=5;CIGAR=1X;DP=43;DPB=43;DPRA=2.3;EPP=13.8677;EPPR=85.5263;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=176;QR=1292;RO=38;RPL=0;RPP=13.8677;RPPR=85.5263;RPR=5;RUN=1;SAF=0;SAP=13.8677;SAR=5;SRF=0;SRP=85.5263;SRR=38;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:12:12,0:12:419:0:0:0,-3.61236,-38.0434 0/1:23:18,5:18:610:5:176:-9.26161,0,-48.2918 0/0:8:8,0:8:263:0:0:0,-2.40824,-23.9896 dDocent_Contig_7828 13 . T A 947.712 . AB=0.395833;ABP=12.0581;AC=3;AF=0.5;AN=6;AO=38;CIGAR=1X;DP=96;DPB=96;DPRA=0;EPP=85.5263;EPPR=128.956;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=59.9483;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=0.810345;PAO=0;PQA=0;PQR=0;PRO=0;QA=1424;QR=2247;RO=58;RPL=0;RPP=85.5263;RPPR=128.956;RPR=38;RUN=1;SAF=38;SAP=85.5263;SAR=0;SRF=58;SRP=128.956;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:55:27,28:27:1050:28:1046:-77.8896,0,-78.2477 0/1:15:11,4:11:431:4:148:-9.16522,0,-34.627 0/1:26:20,6:20:766:6:230:-13.2392,0,-61.4405 dDocent_Contig_7829 36 . G C 34.649 . AB=0.111111;ABP=62.1226;AC=1;AF=0.166667;AN=6;AO=10;CIGAR=1X;DP=169;DPB=169;DPRA=6.54167;EPP=24.725;EPPR=348.274;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=408;QR=6343;RO=159;RPL=0;RPP=24.725;RPPR=348.274;RPR=10;RUN=1;SAF=10;SAP=24.725;SAR=0;SRF=159;SRP=348.274;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:112:107,5:107:4255:5:203:0,-15.0623,-364.265 0/0:12:12,0:12:474:0:0:0,-3.61236,-43.0107 0/1:45:40,5:40:1614:5:205:-5.28866,0,-131.944 dDocent_Contig_7830 16 . T C 4805.6 . AB=0.792746;ABP=146.676;AC=3;AF=0.5;AN=6;AO=153;CIGAR=1X;DP=193;DPB=193;DPRA=0;EPP=335.246;EPPR=89.8692;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=6040;QR=1537;RO=40;RPL=0;RPP=335.246;RPPR=89.8692;RPR=153;RUN=1;SAF=153;SAP=335.246;SAR=0;SRF=40;SRP=89.8692;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:129:22,107:22:841:107:4220:-340.933,0,-37.1799 0/1:21:5,16:5:190:16:635:-51.1654,0,-11.1447 0/1:43:13,30:13:506:30:1185:-93.9837,0,-32.9438 dDocent_Contig_7831 87 . A G 165.816 . AB=0.310345;ABP=12.0706;AC=2;AF=0.333333;AN=6;AO=11;CIGAR=1X;DP=86;DPB=86;DPRA=0;EPP=26.8965;EPPR=165.871;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=0.786667;PAO=0;PQA=0;PQR=0;PRO=0;QA=377;QR=2537;RO=75;RPL=11;RPP=26.8965;RPPR=165.871;RPR=0;RUN=1;SAF=11;SAP=26.8965;SAR=0;SRF=75;SRP=165.871;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:57:55,2:55:1872:2:68:0,-10.7008,-162.301 0/1:7:6,1:6:193:1:35:-1.39142,0,-15.5799 0/1:22:14,8:14:472:8:274:-18.3712,0,-36.1806 dDocent_Contig_7832 43 . G A 1456.45 . AB=0.7;ABP=27.3308;AC=3;AF=0.5;AN=6;AO=49;CIGAR=1X;DP=70;DPB=70;DPRA=0;EPP=109.412;EPPR=48.6112;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=1902;QR=846;RO=21;RPL=0;RPP=109.412;RPPR=48.6112;RPR=49;RUN=1;SAF=49;SAP=109.412;SAR=0;SRF=21;SRP=48.6112;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:37:11,26:11:448:26:1008:-79.878,0,-29.5379 0/1:5:1,4:1:38:4:156:-12.9098,0,-2.29212 0/1:28:9,19:9:360:19:738:-58.312,0,-24.3347 dDocent_Contig_7833 9 . G C 73.614 . AB=0.307692;ABP=7.18621;AC=2;AF=0.333333;AN=6;AO=4;CIGAR=1X;DP=18;DPB=18;DPRA=1.3;EPP=11.6962;EPPR=33.4109;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=1.73472e-18;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=156;QR=539;RO=14;RPL=0;RPP=11.6962;RPPR=33.4109;RPR=4;RUN=1;SAF=4;SAP=11.6962;SAR=0;SRF=14;SRP=33.4109;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:5:5,0:5:194:0:0:0,-1.50515,-17.8328 0/1:6:3,3:3:114:3:117:-9.1042,0,-8.82604 0/1:7:6,1:6:231:1:39:-1.78935,0,-19.0507 dDocent_Contig_7834 18 . C T 65.9216 . AB=0.266667;ABP=10.1038;AC=2;AF=0.333333;AN=6;AO=4;CIGAR=1X;DP=29;DPB=29;DPRA=0.535714;EPP=11.6962;EPPR=57.2971;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=154;QR=991;RO=25;RPL=0;RPP=11.6962;RPPR=57.2971;RPR=4;RUN=1;SAF=4;SAP=11.6962;SAR=0;SRF=25;SRP=57.2971;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:14:14,0:14:552:0:0:0,-4.21442,-50.0215 0/1:12:10,2:10:398:2:74:-3.41166,0,-32.566 0/1:3:1,2:1:41:2:80:-6.6887,0,-3.19148 dDocent_Contig_7835 25 . C T 529.555 . AB=0.308824;ABP=24.5973;AC=2;AF=0.333333;AN=6;AO=21;CIGAR=1X;DP=105;DPB=105;DPRA=0.918919;EPP=48.6112;EPPR=185.414;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=0.952381;PAIREDR=0.904762;PAO=0;PQA=0;PQR=0;PRO=0;QA=847;QR=3297;RO=84;RPL=0;RPP=48.6112;RPPR=185.414;RPR=21;RUN=1;SAF=21;SAP=48.6112;SAR=0;SRF=84;SRP=185.414;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:57:41,16:41:1634:16:643:-41.0456,0,-130.139 0/1:11:6,5:6:229:5:204:-15.4327,0,-17.6618 0/0:37:37,0:37:1434:0:0:0,-11.1381,-129.317 dDocent_Contig_7836 59 . T C 511.339 . AB=0.384615;ABP=9.02361;AC=3;AF=0.5;AN=6;AO=20;CIGAR=1X;DP=52;DPB=52;DPRA=0;EPP=46.4397;EPPR=72.4974;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=791;QR=1267;RO=32;RPL=20;RPP=46.4397;RPPR=72.4974;RPR=0;RUN=1;SAF=20;SAP=46.4397;SAR=0;SRF=32;SRP=72.4974;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:25:17,8:17:676:8:321:-21.7318,0,-53.6424 0/1:13:10,3:10:406:3:122:-7.4591,0,-32.9872 0/1:14:5,9:5:185:9:348:-27.4659,0,-12.7926 dDocent_Contig_7837 10 . G A 541.035 . AB=0.452381;ABP=3.83753;AC=4;AF=0.666667;AN=6;AO=20;CIGAR=1X;DP=43;DPB=43;DPRA=0;EPP=46.4397;EPPR=52.9542;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=3.46945e-18;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=769;QR=916;RO=23;RPL=0;RPP=46.4397;RPPR=52.9542;RPR=20;RUN=1;SAF=20;SAP=46.4397;SAR=0;SRF=23;SRP=52.9542;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:29:16,13:16:631:13:496:-36.2556,0,-48.3855 1/1:1:0,1:0:0:1:34:-3.39891,-0.30103,0 0/1:13:7,6:7:285:6:239:-17.9711,0,-22.111 dDocent_Contig_7838 40 . T C 109.117 . AB=0.333333;ABP=6.62942;AC=2;AF=0.333333;AN=6;AO=6;CIGAR=1X;DP=39;DPB=39;DPRA=0;EPP=16.0391;EPPR=74.6689;GTI=0;LEN=1;MEANALT=1;MQM=57.6667;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=0;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=244;QR=1312;RO=33;RPL=0;RPP=16.0391;RPPR=74.6689;RPR=6;RUN=1;SAF=6;SAP=16.0391;SAR=0;SRF=33;SRP=74.6689;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:24:23,1:23:929:1:41:0,-3.13015,-79.8187 0/1:5:3,2:3:109:2:81:-6.07239,0,-8.65784 0/1:10:7,3:7:274:3:122:-8.36219,0,-22.0111 dDocent_Contig_7840 33 . T C 1213.11 . AB=0.482353;ABP=3.24022;AC=4;AF=0.666667;AN=6;AO=42;CIGAR=1X;DP=86;DPB=86;DPRA=0;EPP=94.2121;EPPR=98.5551;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=1660;QR=1764;RO=44;RPL=0;RPP=94.2121;RPPR=98.5551;RPR=42;RUN=1;SAF=42;SAP=94.2121;SAR=0;SRF=44;SRP=98.5551;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:53:20,33:20:798:33:1316:-102.748,0,-56.1829 1/1:1:0,1:0:0:1:41:-4.09457,-0.30103,0 0/1:32:24,8:24:966:8:303:-17.9906,0,-77.6061 dDocent_Contig_7842 7 . T A 214.092 . AB=0.128342;ABP=227.369;AC=3;AF=0.5;AN=6;AO=24;CIGAR=1X;DP=187;DPB=187;DPRA=0;EPP=55.1256;EPPR=356.96;GTI=0;LEN=1;MEANALT=1;MQM=59.4167;MQMR=59.2699;NS=3;NUMALT=1;ODDS=0;PAIRED=0;PAIREDR=0.104294;PAO=0;PQA=0;PQR=0;PRO=0;QA=913;QR=6192;RO=163;RPL=0;RPP=55.1256;RPPR=356.96;RPR=24;RUN=1;SAF=24;SAP=55.1256;SAR=0;SRF=163;SRP=356.96;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:44:37,7:37:1410:7:266:-11.0568,0,-113.931 0/1:63:56,7:56:2120:7:269:-5.58501,0,-172.071 0/1:80:70,10:70:2662:10:378:-10.2903,0,-215.025 dDocent_Contig_7843 114 . A T 88.4263 . AB=0.416667;ABP=3.73412;AC=2;AF=0.333333;AN=6;AO=5;CIGAR=1X;DP=19;DPB=19;DPRA=0.857143;EPP=13.8677;EPPR=33.4109;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=170;QR=494;RO=14;RPL=0;RPP=13.8677;RPPR=33.4109;RPR=5;RUN=1;SAF=0;SAP=13.8677;SAR=5;SRF=0;SRP=33.4109;SRR=14;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:6:5,1:5:180:1:36:-1.79209,0,-14.7459 0/0:7:7,0:7:244:0:0:0,-2.10721,-22.2997 0/1:6:2,4:2:70:4:134:-10.5848,0,-4.84115 dDocent_Contig_7844 42 . G T 1100.02 . AB=0.777778;ABP=39.2015;AC=3;AF=0.5;AN=6;AO=42;CIGAR=1X;DP=54;DPB=54;DPRA=0;EPP=23.691;EPPR=29.068;GTI=0;LEN=1;MEANALT=1;MQM=49.381;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=0.690476;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=1662;QR=476;RO=12;RPL=11;RPP=23.691;RPPR=29.068;RPR=31;RUN=1;SAF=42;SAP=94.2121;SAR=0;SRF=12;SRP=29.068;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:19:6,13:6:234:13:517:-30.9024,0,-15.7082 0/1:12:1,11:1:40:11:441:-26.2428,0,-0.383319 0/1:23:5,18:5:202:18:704:-56.7591,0,-11.6378 dDocent_Contig_7845 12 . A G 164.865 . AB=0.16;ABP=78.317;AC=2;AF=0.333333;AN=6;AO=12;CIGAR=1X;DP=101;DPB=101;DPRA=1.44231;EPP=29.068;EPPR=196.271;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=465;QR=3416;RO=89;RPL=0;RPP=29.068;RPPR=196.271;RPR=12;RUN=1;SAF=12;SAP=29.068;SAR=0;SRF=89;SRP=196.271;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:68:58,10:58:2224:10:388:-14.8074,0,-179.905 0/1:7:5,2:5:190:2:77:-5.20193,0,-15.3592 0/0:26:26,0:26:1002:0:0:0,-7.82678,-90.4854 dDocent_Contig_7846 35 . C T 49.1596 . AB=0.375;ABP=4.09604;AC=1;AF=0.5;AN=2;AO=3;CIGAR=1X;DP=8;DPB=8;DPRA=0;EPP=9.52472;EPPR=13.8677;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=1;NUMALT=1;ODDS=11.3194;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=100;QR=201;RO=5;RPL=0;RPP=9.52472;RPPR=13.8677;RPR=3;RUN=1;SAF=3;SAP=9.52472;SAR=0;SRF=5;SRP=13.8677;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:8:5,3:5:201:3:100:-6.91596,0,-16.0627 ./.:.:.:.:.:.:.:. ./.:.:.:.:.:.:.:. dDocent_Contig_7847 50 . T C 315.557 . AB=0.348837;ABP=11.5447;AC=2;AF=0.333333;AN=6;AO=16;CIGAR=1X;DP=70;DPB=70;DPRA=0;EPP=37.7539;EPPR=120.27;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=560;QR=1866;RO=54;RPL=16;RPP=37.7539;RPPR=120.27;RPR=0;RUN=1;SAF=16;SAP=37.7539;SAR=0;SRF=54;SRP=120.27;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:27:26,1:26:896:1:34:0,-4.7289,-77.5555 0/1:10:5,5:5:175:5:176:-13.175,0,-13.0834 0/1:33:23,10:23:795:10:350:-21.9035,0,-61.9354 dDocent_Contig_7848 25 . T A 170.575 . AB=0.416667;ABP=3.73412;AC=3;AF=0.5;AN=6;AO=6;CIGAR=1X;DP=18;DPB=18;DPRA=1.3;EPP=16.0391;EPPR=29.068;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=238;QR=464;RO=12;RPL=0;RPP=16.0391;RPPR=29.068;RPR=6;RUN=1;SAF=6;SAP=16.0391;SAR=0;SRF=12;SRP=29.068;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:12:7,5:7:266:5:198:-14.5839,0,-20.6876 1/1:1:0,1:0:0:1:40:-3.99568,-0.30103,0 0/0:5:5,0:5:198:0:0:0,-1.50515,-18.1971 dDocent_Contig_7849 11 . C T 284.761 . AB=0.103896;ABP=107.946;AC=2;AF=0.333333;AN=6;AO=8;CIGAR=1M1X2M1X;DP=77;DPB=77;DPRA=0;EPP=20.3821;EPPR=98.5551;GTI=0;LEN=1;MEANALT=4;MQM=60;MQMR=60;NS=3;NUMALT=4;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=288;QR=1702;RO=44;RPL=0;RPP=20.3821;RPPR=98.5551;RPR=8;RUN=1;SAF=8;SAP=20.3821;SAR=0;SRF=44;SRP=98.5551;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|1:31:15,4,3,3,3:15:582:4,3,3,3:140,120,109,120:-6.86568,0,-46.618,-1.48975,-37.935,-48.416,-2.91275,-39.3524,-40.8485,-49.8326,-1.48975,-37.935,-39.4313,-40.8485,-48.416 0|1:18:12,3,3,0,0:12:467:3,3,0,0:114,114,0,0:-5.73705,0,-37.4842,-0.000410305,-29.0401,-37.4846,-9.34941,-38.3873,-38.3877,-47.7355,-9.34941,-38.3873,-38.3877,-47.7355,-47.7355 0|0:28:17,1,8,2,0:17:653:1,8,2,0:34,320,77,0:-21.2642,-23.6289,-76.9221,0,-50.8584,-51.206,-20.0609,-70.9011,-47.2915,-73.0551,-26.3818,-77.2232,-53.6142,-73.6572,-79.9794 dDocent_Contig_7850 10 . G A 1944.13 . AB=0.625;ABP=17.1249;AC=3;AF=0.5;AN=6;AO=65;CIGAR=1X;DP=104;DPB=104;DPRA=0;EPP=144.156;EPPR=87.6977;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=0.8;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=2559;QR=1497;RO=39;RPL=0;RPP=144.156;RPPR=87.6977;RPR=65;RUN=1;SAF=65;SAP=144.156;SAR=0;SRF=39;SRP=87.6977;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:64:17,47:17:659:47:1853:-147.723,0,-40.3671 0/1:13:6,7:6:221:7:275:-21.2049,0,-16.3297 0/1:27:16,11:16:617:11:431:-31.008,0,-47.7347 dDocent_Contig_7851 35 . G A 1425.38 . AB=0.0917431;ABP=160.811;AC=0;AF=0;AN=6;AO=10;CIGAR=1X1M1X;DP=109;DPB=109;DPRA=0;EPP=24.725;EPPR=94.2121;GTI=0;LEN=1;MEANALT=3;MQM=60;MQMR=60;NS=3;NUMALT=3;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=400;QR=1621;RO=42;RPL=0;RPP=24.725;RPPR=94.2121;RPR=10;RUN=1;SAF=10;SAP=24.725;SAR=0;SRF=42;SRP=94.2121;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|0:58:23,4,3,27:23:899:4,3,27:162,116,1077:-81.773,-75.3376,-148.034,-79.1698,-139.711,-152.167,0,-60.5388,-64.3716,-65.7712 0|0:25:8,4,3,10:8:295:4,3,10:159,111,401:-30.6397,-19.956,-42.8616,-23.9728,-34.9877,-47.1777,0,-11.0116,-15.0315,-21.1 0|0:26:11,2,0,13:11:427:2,0,13:79,0,477:-35.6478,-32.4544,-66.9444,-38.9591,-67.5464,-74.0488,0,-28.5746,-35.0766,-31.1632 dDocent_Contig_7852 8 . G A 101.979 . AB=0.263158;ABP=12.2676;AC=1;AF=0.166667;AN=6;AO=16;CIGAR=1X;DP=158;DPB=158;DPRA=0;EPP=37.7539;EPPR=309.188;GTI=0;LEN=1;MEANALT=1.33333;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=590;QR=5328;RO=141;RPL=0;RPP=37.7539;RPPR=309.188;RPR=16;RUN=1;SAF=16;SAP=37.7539;SAR=0;SRF=141;SRP=309.188;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:92:83,8:83:3144:8:280:0,-2.24833,-257.58 0/1:19:14,5:14:529:5:193:-12.0218,0,-42.2296 0/0:47:44,3:44:1655:3:117:0,-3.23803,-138.3 dDocent_Contig_7856 18 . C T 62.3797 . AB=0.272727;ABP=7.94546;AC=1;AF=0.166667;AN=6;AO=4;CIGAR=1X;DP=27;DPB=27;DPRA=6.25;EPP=11.6962;EPPR=52.9542;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=158;QR=915;RO=23;RPL=0;RPP=11.6962;RPPR=52.9542;RPR=4;RUN=1;SAF=4;SAP=11.6962;SAR=0;SRF=23;SRP=52.9542;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:14:13,1:13:524:1:36:0,-0.616145,-43.909 0/0:2:2,0:2:82:0:0:0,-0.60206,-7.77968 0/1:11:8,3:8:309:3:122:-8.06116,0,-24.8521 dDocent_Contig_7858 24 . G A 116.885 . AB=0.163265;ABP=51.2702;AC=1;AF=0.166667;AN=6;AO=9;CIGAR=1M7I1M1X2M1X;DP=73;DPB=83.5;DPRA=4.71429;EPP=22.5536;EPPR=141.985;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=350;QR=2517;RO=64;RPL=0;RPP=22.5536;RPPR=141.985;RPR=9;RUN=1;SAF=9;SAP=22.5536;SAR=0;SRF=64;SRP=141.985;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|0:17:16,1:16:637:1:40:0,-1.12183,-53.6691 0|0:7:7,0:7:282:0:0:0,-2.10721,-25.753 0|1:49:41,8:41:1598:8:310:-13.5122,0,-129.312 dDocent_Contig_7859 8 . G A 31.0652 . AB=0.116279;ABP=58.0041;AC=2;AF=0.333333;AN=6;AO=5;CIGAR=2X1M3X;DP=73;DPB=73;DPRA=0.716667;EPP=13.8677;EPPR=131.127;GTI=0;LEN=1;MEANALT=2.5;MQM=60;MQMR=60;NS=3;NUMALT=3;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=194;QR=2303;RO=59;RPL=0;RPP=13.8677;RPPR=131.127;RPR=5;RUN=1;SAF=5;SAP=13.8677;SAR=0;SRF=59;SRP=131.127;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|0:30:28,1,0,0:28:1102:1,0,0:38,0,0:0,-5.31729,-95.672,-8.42884,-95.9731,-99.0891,-8.42884,-95.9731,-99.0891,-99.0891 0|1:12:9,0,2,1:9:340:0,2,1:0,75,41:-3.41039,-6.11966,-33.9774,0,-27.8356,-27.2335,-2.724,-30.5906,-24.4483,-30.2896 0|1:31:22,3,3,3:22:861:3,3,3:106,119,95:-3.19387,-1.18631,-71.103,0,-62.2085,-69.9336,-2.19525,-64.3734,-63.2035,-72.0975 dDocent_Contig_7860 38 . C G 127.334 . AB=0.166667;ABP=60.9162;AC=3;AF=0.5;AN=6;AO=10;CIGAR=1X;DP=60;DPB=60;DPRA=0;EPP=24.725;EPPR=111.584;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=0.98;PAO=0;PQA=0;PQR=0;PRO=0;QA=391;QR=1958;RO=50;RPL=0;RPP=24.725;RPPR=111.584;RPR=10;RUN=1;SAF=10;SAP=24.725;SAR=0;SRF=50;SRP=111.584;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:30:25,5:25:977:5:196:-8.98394,0,-79.1914 0/1:22:19,3:19:753:3:122:-4.74983,0,-61.4703 0/1:8:6,2:6:228:2:73:-4.52183,0,-18.4739 dDocent_Contig_7862 18 . A C 1758.83 . AB=0.047619;ABP=40.3389;AC=4;AF=0.666667;AN=6;AO=4;CIGAR=1X7M1X;DP=72;DPB=72;DPRA=0;EPP=11.6962;EPPR=31.2394;GTI=0;LEN=1;MEANALT=2;MQM=60;MQMR=60;NS=3;NUMALT=2;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=158;QR=511;RO=13;RPL=0;RPP=11.6962;RPPR=31.2394;RPR=4;RUN=1;SAF=4;SAP=11.6962;SAR=0;SRF=13;SRP=31.2394;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 1|1:40:1,36,3:1:40:36,3:1396,118:-121.919,-7.54035,0,-112.513,-1.13537,-114.905 0|1:11:5,6,0:5:197:6,0:226,0:-17.3891,0,-14.7951,-18.8942,-16.6013,-35.1097 0|1:21:7,13,1:7:274:13,1:513,40:-40.0979,0,-18.6084,-38.9096,-19.2256,-61.1367 dDocent_Contig_7863 64 . T A 194.376 . AB=0.375;ABP=6.26751;AC=3;AF=0.5;AN=6;AO=9;CIGAR=1X;DP=24;DPB=24;DPRA=0;EPP=22.5536;EPPR=35.5824;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=340;QR=578;RO=15;RPL=9;RPP=22.5536;RPPR=35.5824;RPR=0;RUN=1;SAF=9;SAP=22.5536;SAR=0;SRF=15;SRP=35.5824;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:3:1,2:1:32:2:72:-5.93123,0,-2.29622 0/1:6:5,1:5:200:1:34:-1.59273,0,-16.5729 0/1:15:9,6:9:346:6:234:-16.9157,0,-26.9835 dDocent_Contig_7865 21 . C T 145.986 . AB=0.222222;ABP=15.074;AC=2;AF=0.333334;AN=6;AO=4;CIGAR=1X6M;DP=30;DPB=30.5714;DPRA=9;EPP=11.6962;EPPR=46.4397;GTI=0;LEN=1;MEANALT=2;MQM=60;MQMR=60;NS=3;NUMALT=3;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=161;QR=793;RO=20;RPL=0;RPP=11.6962;RPPR=46.4397;RPR=4;RUN=1;SAF=4;SAP=11.6962;SAR=0;SRF=20;SRP=46.4397;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|1:18:12,0,2,4:12:478:0,2,4:0,81,161:-9.65473,-13.2671,-52.6246,-6.5871,-45.9449,-45.3428,0,-39.3552,-32.6751,-38.1511 0|0:2:2,0,0,0:2:79:0,0,0:0,0,0:0,-0.60206,-7.49763,-0.60206,-7.49763,-7.49763,-0.60206,-7.49763,-7.49763,-7.49763 0|1:10:6,3,0,0:6:236:3,0,0:123,0,0:-8.46566,0,-18.6321,-10.2718,-19.5352,-29.6985,-10.2718,-19.5352,-29.6985,-29.6985 dDocent_Contig_7866 107 . N T 67.4314 . AB=0;ABP=0;AC=2;AF=1;AN=2;AO=2;CIGAR=1X;DP=2;DPB=2;DPRA=0;EPP=7.35324;EPPR=0;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=0;NS=1;NUMALT=1;ODDS=5.99146;PAIRED=1;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=71;QR=0;RO=0;RPL=0;RPP=7.35324;RPPR=0;RPR=2;RUN=1;SAF=0;SAP=7.35324;SAR=2;SRF=0;SRP=0;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL ./.:.:.:.:.:.:.:. ./.:.:.:.:.:.:.:. 1/1:2:0,2:0:0:2:71:-6.74206,-0.60206,0 dDocent_Contig_7867 36 . G T 43.567 . AB=0.4;ABP=3.44459;AC=1;AF=0.166667;AN=6;AO=3;CIGAR=1X;DP=44;DPB=44;DPRA=1.94444;EPP=9.52472;EPPR=92.0407;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=120;QR=1644;RO=41;RPL=0;RPP=9.52472;RPPR=92.0407;RPR=3;RUN=1;SAF=3;SAP=9.52472;SAR=0;SRF=41;SRP=92.0407;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:30:29,1:29:1159:1:39:0,-5.13434,-100.692 0/1:5:3,2:3:121:2:81:-6.18058,0,-9.77505 0/0:9:9,0:9:364:0:0:0,-2.70927,-33.1244 dDocent_Contig_7868 26 . T C 127.611 . AB=0.416667;ABP=3.73412;AC=1;AF=0.166667;AN=6;AO=10;CIGAR=1X;DP=118;DPB=118;DPRA=1.95833;EPP=24.725;EPPR=237.529;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=3.46945e-18;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=399;QR=4278;RO=108;RPL=0;RPP=24.725;RPPR=237.529;RPR=10;RUN=1;SAF=10;SAP=24.725;SAR=0;SRF=108;SRP=237.529;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:82:77,5:77:3044:5:201:0,-6.21336,-255.58 0/1:12:7,5:7:279:5:198:-14.585,0,-21.8679 0/0:24:24,0:24:955:0:0:0,-7.22472,-86.2539 dDocent_Contig_7870 30 . G T 83.3572 . AB=0.206897;ABP=24.6501;AC=3;AF=0.5;AN=6;AO=6;CIGAR=1X;DP=29;DPB=29;DPRA=0;EPP=16.0391;EPPR=52.9542;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=238;QR=926;RO=23;RPL=0;RPP=16.0391;RPPR=52.9542;RPR=6;RUN=1;SAF=6;SAP=16.0391;SAR=0;SRF=23;SRP=52.9542;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:13:11,2:11:444:2:82:-3.86629,0,-36.4022 0/1:11:9,2:9:359:2:80:-4.28046,0,-29.3609 0/1:5:3,2:3:123:2:76:-5.70911,0,-9.95964 dDocent_Contig_7871 70 . T C 97.6793 . AB=0.263158;ABP=12.2676;AC=1;AF=0.166667;AN=6;AO=5;CIGAR=1X;DP=29;DPB=29;DPRA=3.8;EPP=13.8677;EPPR=55.1256;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=185;QR=837;RO=24;RPL=5;RPP=13.8677;RPPR=55.1256;RPR=0;RUN=1;SAF=5;SAP=13.8677;SAR=0;SRF=24;SRP=55.1256;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:19:14,5:14:479:5:185:-11.2904,0,-37.7131 0/0:2:2,0:2:74:0:0:0,-0.60206,-7.02588 0/0:8:8,0:8:284:0:0:0,-2.40824,-25.9036 dDocent_Contig_7872 111 . T A 144.16 . AB=0.296296;ABP=12.7417;AC=2;AF=0.333333;AN=6;AO=9;CIGAR=1X1M1X1M;DP=45;DPB=46;DPRA=0;EPP=22.5536;EPPR=72.4974;GTI=0;LEN=1;MEANALT=2;MQM=56.2222;MQMR=60;NS=3;NUMALT=2;ODDS=0;PAIRED=0;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=312;QR=1050;RO=32;RPL=0;RPP=22.5536;RPPR=72.4974;RPR=9;RUN=1;SAF=0;SAP=22.5536;SAR=9;SRF=0;SRP=72.4974;SRR=32;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|1:11:7,4,0:7:233:4,0:137,0:-9.25246,0,-17.9848,-11.3597,-19.1889,-30.2115 0|0:18:16,1,1:16:508:1,1:35,35:0,-1.96748,-42.5283,-1.99268,-40.0025,-42.5512 0|1:16:9,4,2:9:309:4,2:140,70:-8.68644,0,-23.888,-5.74516,-19.4411,-30.2323 dDocent_Contig_7873 112 . A G 52.2146 . AB=0.181818;ABP=32.0291;AC=2;AF=0.333333;AN=6;AO=7;CIGAR=1X;DP=84;DPB=84;DPRA=0;EPP=18.2106;EPPR=170.214;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=229;QR=2528;RO=77;RPL=0;RPP=18.2106;RPPR=170.214;RPR=7;RUN=1;SAF=0;SAP=18.2106;SAR=7;SRF=0;SRP=170.214;SRR=77;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:51:50,1:50:1620:1:29:0,-12.4529,-143.18 0/1:11:9,2:9:303:2:64:-2.76704,0,-24.2868 0/1:22:18,4:18:605:4:136:-5.9532,0,-48.144 dDocent_Contig_7874 8 . G A 1460.85 . AB=0.604651;ABP=11.1912;AC=3;AF=0.5;AN=6;AO=52;CIGAR=1X;DP=86;DPB=86;DPRA=0;EPP=115.927;EPPR=76.8404;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=0.970588;PAO=0;PQA=0;PQR=0;PRO=0;QA=1961;QR=1303;RO=34;RPL=0;RPP=115.927;RPPR=76.8404;RPR=52;RUN=1;SAF=52;SAP=115.927;SAR=0;SRF=34;SRP=76.8404;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:37:16,21:16:611:21:797:-60.9176,0,-44.1904 0/1:8:6,2:6:226:2:77:-4.9009,0,-18.2927 0/1:41:12,29:12:466:29:1087:-85.7892,0,-29.9498 dDocent_Contig_7875 19 . A T 1158.86 . AB=0.634921;ABP=12.9715;AC=3;AF=0.5;AN=6;AO=40;CIGAR=1X;DP=63;DPB=63;DPRA=0;EPP=89.8692;EPPR=52.9542;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=1548;QR=909;RO=23;RPL=0;RPP=89.8692;RPPR=52.9542;RPR=40;RUN=1;SAF=40;SAP=89.8692;SAR=0;SRF=23;SRP=52.9542;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:45:15,30:15:586:30:1148:-90.0561,0,-39.5309 0/1:2:1,1:1:40:1:40:-3.39362,0,-3.39362 0/1:16:7,9:7:283:9:360:-27.9477,0,-21.0271 dDocent_Contig_7876 7 . T C 48.7119 . AB=0.131579;ABP=47.8112;AC=1;AF=0.166667;AN=6;AO=5;CIGAR=2X;DP=50;DPB=50;DPRA=6.33333;EPP=13.8677;EPPR=100.727;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=0;PAIREDR=0.888889;PAO=0;PQA=0;PQR=0;PRO=0;QA=194;QR=1729;RO=45;RPL=0;RPP=13.8677;RPPR=100.727;RPR=5;RUN=1;SAF=5;SAP=13.8677;SAR=0;SRF=45;SRP=100.727;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|1:38:33,5:33:1265:5:194:-6.3937,0,-102.704 0|0:10:10,0:10:386:0:0:0,-3.0103,-35.0973 0|0:2:2,0:2:78:0:0:0,-0.60206,-7.40347 dDocent_Contig_7877 10 . A T 227.313 . AB=0.3125;ABP=12.7819;AC=1;AF=0.166667;AN=6;AO=10;CIGAR=1X;DP=99;DPB=99;DPRA=0.955224;EPP=24.725;EPPR=196.271;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=0.617978;PAO=0;PQA=0;PQR=0;PRO=0;QA=376;QR=3478;RO=89;RPL=0;RPP=24.725;RPPR=196.271;RPR=10;RUN=1;SAF=10;SAP=24.725;SAR=0;SRF=89;SRP=196.271;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:50:50,0:50:1980:0:0:0,-15.0515,-178.401 0/0:17:17,0:17:663:0:0:0,-5.11751,-60.004 0/1:32:22,10:22:835:10:376:-24.5552,0,-65.8188 dDocent_Contig_7879 8 . G T 100.169 . AB=0.116883;ABP=101.178;AC=1;AF=0.166667;AN=6;AO=9;CIGAR=2X;DP=87;DPB=87;DPRA=3.85;EPP=22.5536;EPPR=159.356;GTI=0;LEN=1;MEANALT=2;MQM=60;MQMR=55.5;NS=3;NUMALT=2;ODDS=0;PAIRED=1;PAIREDR=0.875;PAO=0;PQA=0;PQR=0;PRO=0;QA=344;QR=2756;RO=72;RPL=0;RPP=22.5536;RPPR=159.356;RPR=9;RUN=1;SAF=9;SAP=22.5536;SAR=0;SRF=72;SRP=159.356;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|1:42:36,6,0:36:1380:6,0:227,0:-8.14988,0,-111.842,-18.987,-113.649,-132.257 0|0:10:10,0,0:10:375:0,0:0,0:0,-3.0103,-34.1015,-3.0103,-34.1015,-34.1015 0|0:35:26,3,5:26:1001:3,5:117,164:-5.38985,-3.58184,-72.7061,0,-60.3594,-68.4774 dDocent_Contig_7880 43 . G A 98.3336 . AB=0.114286;ABP=183.925;AC=2;AF=0.333333;AN=6;AO=16;CIGAR=1X;DP=158;DPB=158;DPRA=3.88889;EPP=37.7539;EPPR=7.46105;GTI=0;LEN=1;MEANALT=1.5;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=6.93889e-18;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=609;QR=5528;RO=141;RPL=16;RPP=37.7539;RPPR=7.46105;RPR=0;RUN=1;SAF=16;SAP=37.7539;SAR=0;SRF=141;SRP=309.188;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:90:78,11:78:3100:11:422:-11.126,0,-251.89 0/0:18:18,0:18:691:0:0:0,-5.41854,-62.5093 0/1:50:45,5:45:1737:5:187:-2.13542,0,-141.498 dDocent_Contig_7881 195 . C G 38.4867 . AB=0.25;ABP=7.35324;AC=1;AF=0.166667;AN=6;AO=2;CIGAR=1X;DP=23;DPB=23;DPRA=1.06667;EPP=7.35324;EPPR=48.6112;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=82;QR=824;RO=21;RPL=2;RPP=7.35324;RPPR=48.6112;RPR=0;RUN=1;SAF=0;SAP=7.35324;SAR=2;SRF=0;SRP=48.6112;SRR=21;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:8:6,2:6:224:2:82:-5.37144,0,-18.1002 0/0:10:10,0:10:407:0:0:0,-3.0103,-36.9904 0/0:5:5,0:5:193:0:0:0,-1.50515,-17.7387 dDocent_Contig_7882 8 . G A 303.84 . AB=0.258065;ABP=34.5317;AC=3;AF=0.5;AN=6;AO=16;CIGAR=1X;DP=62;DPB=62;DPRA=0;EPP=3.0103;EPPR=86.2815;GTI=0;LEN=1;MEANALT=1;MQM=49.75;MQMR=59.8696;NS=3;NUMALT=1;ODDS=0;PAIRED=0;PAIREDR=0.891304;PAO=0;PQA=0;PQR=0;PRO=0;QA=621;QR=1701;RO=46;RPL=0;RPP=37.7539;RPPR=102.898;RPR=16;RUN=1;SAF=8;SAP=3.0103;SAR=8;SRF=44;SRP=86.2815;SRR=2;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:27:21,6:21:782:6:238:-11.2632,0,-62.5692 0/1:17:9,8:9:338:8:304:-22.4848,0,-25.6517 0/1:18:16,2:16:581:2:79:-2.04469,0,-47.1984 dDocent_Contig_7883 98 . N T 65.5375 . AB=0;ABP=0;AC=2;AF=1;AN=2;AO=2;CIGAR=3X;DP=2;DPB=2;DPRA=0;EPP=7.35324;EPPR=0;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=0;NS=1;NUMALT=1;ODDS=5.99146;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=69;QR=0;RO=0;RPL=2;RPP=7.35324;RPPR=0;RPR=0;RUN=1;SAF=2;SAP=7.35324;SAR=0;SRF=0;SRP=0;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 1|1:2:0,2:0:0:2:69:-6.55266,-0.60206,0 .:.:.:.:.:.:.:. .:.:.:.:.:.:.:. dDocent_Contig_7884 185 . G C 707.506 . AB=0.369863;ABP=13.7487;AC=2;AF=0.333333;AN=6;AO=27;CIGAR=1X1M1X;DP=78;DPB=78;DPRA=7.3;EPP=61.6401;EPPR=111.584;GTI=0;LEN=1;MEANALT=1.5;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=6.93889e-18;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=1063;QR=1991;RO=50;RPL=27;RPP=61.6401;RPPR=111.584;RPR=0;RUN=1;SAF=0;SAP=61.6401;SAR=27;SRF=0;SRP=111.584;SRR=50;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|1:52:36,16:36:1429:16:631:-41.4699,0,-113.212 0|0:5:5,0:5:201:0:0:0,-1.50515,-18.4709 0|1:21:9,11:9:361:11:432:-32.8035,0,-26.4249 dDocent_Contig_7885 74 . G A 90.929 . AB=0.285714;ABP=11.386;AC=2;AF=0.333333;AN=6;AO=7;CIGAR=1X;DP=48;DPB=48;DPRA=0;EPP=18.2106;EPPR=92.0407;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=236;QR=1385;RO=41;RPL=7;RPP=18.2106;RPPR=92.0407;RPR=0;RUN=1;SAF=7;SAP=18.2106;SAR=0;SRF=41;SRP=92.0407;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:18:13,5:13:444:5:173:-10.4917,0,-34.8693 0/1:3:2,1:2:70:1:29:-1.99657,0,-5.74431 0/0:27:26,1:26:871:1:34:0,-4.7289,-75.302 dDocent_Contig_7886 36 . G A 775.771 . AB=0.152493;ABP=360.692;AC=3;AF=0.5;AN=6;AO=52;CIGAR=1X;DP=341;DPB=341;DPRA=0;EPP=115.927;EPPR=630.566;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=59.737;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=0.989619;PAO=0;PQA=0;PQR=0;PRO=0;QA=2053;QR=11486;RO=289;RPL=0;RPP=115.927;RPPR=630.566;RPR=52;RUN=1;SAF=52;SAP=115.927;SAR=0;SRF=289;SRP=630.566;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:163:140,23:140:5554:23:886:-30.9742,0,-450.601 0/1:39:32,7:32:1276:7:280:-13.831,0,-101.346 0/1:139:117,22:117:4656:22:887:-38.2947,0,-377.11 dDocent_Contig_7889 14 . C T 508.571 . AB=0.45;ABP=3.87889;AC=2;AF=0.333333;AN=6;AO=18;CIGAR=1X;DP=54;DPB=54;DPRA=1.42857;EPP=42.0968;EPPR=81.1833;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=3.46945e-18;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=730;QR=1414;RO=36;RPL=0;RPP=42.0968;RPPR=81.1833;RPR=18;RUN=1;SAF=18;SAP=42.0968;SAR=0;SRF=36;SRP=81.1833;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:28:12,16:12:476:16:651:-50.4932,0,-34.7552 0/0:14:14,0:14:533:0:0:0,-4.21442,-48.2987 0/1:12:10,2:10:405:2:79:-3.88488,0,-33.1977 dDocent_Contig_7890 98 . N C 310.553 . AB=0;ABP=0;AC=6;AF=1;AN=6;AO=10;CIGAR=1X;DP=10;DPB=10;DPRA=0;EPP=24.725;EPPR=0;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=0;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=329;QR=0;RO=0;RPL=10;RPP=24.725;RPPR=0;RPR=0;RUN=1;SAF=10;SAP=24.725;SAR=0;SRF=0;SRP=0;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 1/1:3:0,3:0:0:3:99:-9.23746,-0.90309,0 1/1:2:0,2:0:0:2:62:-5.88896,-0.60206,0 1/1:5:0,5:0:0:5:168:-15.4512,-1.50515,0 dDocent_Contig_7892 122 . G T 114.874 . AB=0.333333;ABP=7.35324;AC=2;AF=0.333333;AN=6;AO=7;CIGAR=1X;DP=45;DPB=45;DPRA=0;EPP=18.2106;EPPR=85.5263;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=256;QR=1337;RO=38;RPL=0;RPP=18.2106;RPPR=85.5263;RPR=7;RUN=1;SAF=0;SAP=18.2106;SAR=7;SRF=0;SRP=85.5263;SRR=38;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:27:26,1:26:907:1:37:0,-4.42998,-78.2384 0/1:10:7,3:7:249:3:108:-7.06463,0,-19.7445 0/1:8:5,3:5:181:3:111:-7.94568,0,-14.2352 dDocent_Contig_7893 98 . N A 170.102 . AB=0;ABP=0;AC=2;AF=1;AN=2;AO=5;CIGAR=4X;DP=5;DPB=5;DPRA=0;EPP=13.8677;EPPR=0;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=0;NS=1;NUMALT=1;ODDS=8.07091;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=185;QR=0;RO=0;RPL=5;RPP=13.8677;RPPR=0;RPR=0;RUN=1;SAF=0;SAP=13.8677;SAR=5;SRF=0;SRP=0;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL .:.:.:.:.:.:.:. 1|1:5:0,5:0:0:5:185:-17.01,-1.50515,0 .:.:.:.:.:.:.:. dDocent_Contig_7894 37 . C T 184.301 . AB=0.25;ABP=22.5536;AC=2;AF=0.333333;AN=6;AO=9;CIGAR=1X;DP=46;DPB=46;DPRA=1.8;EPP=22.5536;EPPR=83.3548;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=3.46945e-18;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=356;QR=1473;RO=37;RPL=0;RPP=22.5536;RPPR=83.3548;RPR=9;RUN=1;SAF=9;SAP=22.5536;SAR=0;SRF=37;SRP=83.3548;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:10:10,0:10:397:0:0:0,-3.0103,-36.0873 0/1:21:17,4:17:683:4:153:-7.81539,0,-55.4769 0/1:15:10,5:10:393:5:203:-14.1376,0,-31.2095 dDocent_Contig_7895 18 . T G 1063.35 . AB=0.182099;ABP=287.42;AC=3;AF=0.5;AN=6;AO=59;CIGAR=1X;DP=324;DPB=324;DPRA=0;EPP=91.3782;EPPR=578.45;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=0.745763;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=2316;QR=10619;RO=265;RPL=0;RPP=131.127;RPPR=578.45;RPR=59;RUN=1;SAF=54;SAP=91.3782;SAR=5;SRF=265;SRP=578.45;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:208:171,37:171:6859:37:1435:-66.7869,0,-554.369 0/1:26:21,5:21:824:5:194:-10.0045,0,-66.6468 0/1:90:73,17:73:2936:17:687:-35.0667,0,-237.237 dDocent_Contig_7896 67 . G A 202.442 . AB=0.184211;ABP=68.8402;AC=3;AF=0.5;AN=6;AO=14;CIGAR=1X;DP=76;DPB=76;DPRA=0;EPP=33.4109;EPPR=137.642;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=0.983871;PAO=0;PQA=0;PQR=0;PRO=0;QA=524;QR=2353;RO=62;RPL=14;RPP=33.4109;RPPR=137.642;RPR=0;RUN=1;SAF=14;SAP=33.4109;SAR=0;SRF=62;SRP=137.642;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:41:34,7:34:1282:7:272:-12.5045,0,-103.307 0/1:7:3,4:3:120:4:144:-11.203,0,-9.08048 0/1:28:25,3:25:951:3:108:-1.64434,0,-77.4745 dDocent_Contig_7897 17 . T C 2690.21 . AB=0.137566;ABP=218.652;AC=1;AF=0.166667;AN=6;AO=26;CIGAR=2X3M;DP=189;DPB=189;DPRA=0;EPP=59.4686;EPPR=124.613;GTI=0;LEN=1;MEANALT=3.33333;MQM=60;MQMR=60;NS=3;NUMALT=3;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=1031;QR=2070;RO=56;RPL=0;RPP=59.4686;RPPR=124.613;RPR=26;RUN=1;SAF=26;SAP=59.4686;SAR=0;SRF=56;SRP=124.613;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 1|0:106:20,8,20,57:20:744:8,20,57:316,791,2173:-176.429,-156.446,-214.931,-117.357,-152.245,-172.229,-4.21104,-39.0926,0,-47.9384 0|0:23:7,0,4,12:7:256:0,4,12:0,161,444:-34.1891,-36.2963,-57.212,-23.0191,-43.937,-42.7329,0,-20.8962,-7.6138,-17.2838 0|0:60:29,4,2,24:29:1070:4,2,24:154,79,888:-63.9256,-60.0084,-146.315,-66.1524,-141.017,-153.06,0,-74.8777,-81.0216,-80.2996 dDocent_Contig_7899 11 . A T 1525.76 . AB=0.540816;ABP=4.4284;AC=3;AF=0.5;AN=6;AO=53;CIGAR=1X1M1X;DP=98;DPB=98;DPRA=0;EPP=118.098;EPPR=94.2121;GTI=0;LEN=1;MEANALT=1.66667;MQM=60;MQMR=60;NS=3;NUMALT=2;ODDS=0;PAIRED=0.867925;PAIREDR=0.904762;PAO=0;PQA=0;PQR=0;PRO=0;QA=2072;QR=1670;RO=42;RPL=0;RPP=118.098;RPPR=94.2121;RPR=53;RUN=1;SAF=53;SAP=118.098;SAR=0;SRF=42;SRP=94.2121;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|1:34:16,18,0:16:639:18,0:709,0:-53.9005,0,-47.6111,-58.717,-53.0297,-111.35 0|1:21:11,8,2:11:429:8,2:308,82:-21.9521,0,-32.8346,-18.4903,-28.4716,-53.1508 0|1:43:15,27,1:15:602:27,1:1055,36:-82.2461,0,-41.513,-83.8252,-46.706,-133.13 dDocent_Contig_7900 111 . C T 36.5103 . AB=0.166667;ABP=31.9633;AC=2;AF=0.333333;AN=6;AO=6;CIGAR=1X;DP=43;DPB=43;DPRA=0;EPP=16.0391;EPPR=83.3548;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=206;QR=1182;RO=37;RPL=0;RPP=16.0391;RPPR=83.3548;RPR=6;RUN=1;SAF=0;SAP=16.0391;SAR=6;SRF=0;SRP=83.3548;SRR=37;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:25:21,4:21:671:4:136:-5.05007,0,-53.1643 0/1:5:4,1:4:122:1:35:-1.99348,0,-9.77603 0/0:13:12,1:12:389:1:35:0,-0.414761,-31.8243 dDocent_Contig_7901 11 . A T 81.5335 . AB=0.333333;ABP=5.9056;AC=2;AF=0.333333;AN=6;AO=5;CIGAR=1X;DP=53;DPB=53;DPRA=0;EPP=13.8677;EPPR=107.241;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=196;QR=1905;RO=48;RPL=0;RPP=13.8677;RPPR=107.241;RPR=5;RUN=1;SAF=5;SAP=13.8677;SAR=0;SRF=48;SRP=107.241;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:41:40,1:40:1593:1:35:0,-8.8436,-140.109 0/1:9:7,2:7:272:2:82:-5.07041,0,-22.135 0/1:3:1,2:1:40:2:79:-6.59415,0,-3.09259 dDocent_Contig_7902 75 . G A 47.1167 . AB=0.192308;ABP=24.391;AC=2;AF=0.333333;AN=6;AO=5;CIGAR=1X;DP=53;DPB=53;DPRA=0.481481;EPP=13.8677;EPPR=107.241;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=156;QR=1606;RO=48;RPL=5;RPP=13.8677;RPPR=107.241;RPR=0;RUN=1;SAF=5;SAP=13.8677;SAR=0;SRF=48;SRP=107.241;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:22:18,4:18:622:4:139:-6.23003,0,-49.6824 0/1:4:3,1:3:103:1:17:-0.495859,0,-8.40585 0/0:27:27,0:27:881:0:0:0,-8.12781,-79.5899 dDocent_Contig_7903 38 . C G 42.2246 . AB=0.157895;ABP=22.325;AC=1;AF=0.166667;AN=6;AO=3;CIGAR=1X;DP=42;DPB=42;DPRA=1.65217;EPP=9.52472;EPPR=87.6977;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=123;QR=1532;RO=39;RPL=0;RPP=9.52472;RPPR=87.6977;RPR=3;RUN=1;SAF=3;SAP=9.52472;SAR=0;SRF=39;SRP=87.6977;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:19:16,3:16:603:3:123:-5.74522,0,-48.867 0/0:4:4,0:4:163:0:0:0,-1.20412,-15.0584 0/0:19:19,0:19:766:0:0:0,-5.71957,-69.2606 dDocent_Contig_7905 148 . T C 368.819 . AB=0.27027;ABP=36.9322;AC=2;AF=0.5;AN=4;AO=20;CIGAR=1X;DP=74;DPB=74;DPRA=0;EPP=46.4397;EPPR=120.27;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=2;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=689;QR=1898;RO=54;RPL=0;RPP=46.4397;RPPR=120.27;RPR=20;RUN=1;SAF=0;SAP=46.4397;SAR=20;SRF=0;SRP=120.27;SRR=54;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:58:40,18:40:1414:18:617:-38.3912,0,-110.097 ./.:.:.:.:.:.:.:. 0/1:16:14,2:14:484:2:72:-2.02024,0,-39.0677 dDocent_Contig_7906 11 . A T 1581.97 . AB=0.0517241;ABP=205.481;AC=0;AF=0;AN=6;AO=6;CIGAR=2M1X11M;DP=132;DPB=131.643;DPRA=0;EPP=16.0391;EPPR=55.1256;GTI=0;LEN=1;MEANALT=8.5;MQM=60;MQMR=60;NS=3;NUMALT=6;ODDS=5.55112e-17;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=245;QR=921;RO=24;RPL=0;RPP=16.0391;RPPR=55.1256;RPR=6;RUN=1;SAF=6;SAP=16.0391;SAR=0;SRF=24;SRP=55.1256;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|0:54:10,9,14,3,3,2,13:10:387:9,14,3,3,2,13:348,510,120,119,82,518:-49.4833,-23.9087,-52.9875,-10.8699,-14.0728,-38.4411,-42.6075,-45.8107,-32.7699,-73.4926,-42.6971,-45.9003,-32.8595,-64.5993,-73.5822,-45.7243,-48.9275,-35.8865,-67.6266,-67.7161,-76.9105,-9.83515,-13.0385,0,-31.7381,-31.8277,-34.8549,-37.7111 0|0:16:5,9,1,0,0,0,0:5:180:9,1,0,0,0,0:344,35,0,0,0,0:-26.7247,0,-11.9625,-25.3853,-11.8265,-39.7607,-28.2299,-14.6718,-40.0618,-42.9079,-28.2299,-14.6718,-40.0618,-42.9079,-42.9079,-28.2299,-14.6718,-40.0618,-42.9079,-42.9079,-42.9079,-28.2299,-14.6718,-40.0618,-42.9079,-42.9079,-42.9079,-42.9079 0|0:62:9,0,8,1,5,4,27:9:354:0,8,1,5,4,27:0,277,41,204,163,1094:-87.5121,-90.2214,-119.341,-67.7676,-96.8853,-94.4771,-86.837,-115.956,-93.5011,-115.655,-73.3887,-102.508,-80.0534,-99.1238,-101.003,-76.7731,-105.893,-83.4376,-102.508,-89.0599,-104.688,0,-29.1215,-6.67128,-25.7367,-12.2868,-15.6717,-20.9937 dDocent_Contig_7907 17 . A G 1564.73 . AB=0.557895;ABP=5.77607;AC=2;AF=0.333333;AN=6;AO=53;CIGAR=1X;DP=100;DPB=100;DPRA=9.5;EPP=118.098;EPPR=105.07;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=2089;QR=1902;RO=47;RPL=0;RPP=118.098;RPPR=105.07;RPR=53;RUN=1;SAF=53;SAP=118.098;SAR=0;SRF=47;SRP=105.07;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:69:27,42:27:1097:42:1649:-127.868,0,-78.241 0/0:5:5,0:5:202:0:0:0,-1.50515,-18.5619 0/1:26:15,11:15:603:11:440:-32.1282,0,-46.781 dDocent_Contig_7908 43 . C T 112.551 . AB=0.294118;ABP=9.26925;AC=1;AF=0.166667;AN=6;AO=5;CIGAR=1X;DP=47;DPB=47;DPRA=1.13333;EPP=13.8677;EPPR=94.2121;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=1.73472e-18;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=198;QR=1619;RO=42;RPL=0;RPP=13.8677;RPPR=94.2121;RPR=5;RUN=1;SAF=5;SAP=13.8677;SAR=0;SRF=42;SRP=94.2121;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:24:24,0:24:924:0:0:0,-7.22472,-83.4632 0/0:6:6,0:6:230:0:0:0,-1.80618,-21.066 0/1:17:12,5:12:465:5:198:-13.079,0,-37.0763 dDocent_Contig_7909 7 . T G 93.7208 . AB=0.229508;ABP=41.7764;AC=3;AF=0.5;AN=6;AO=14;CIGAR=1X7M;DP=61;DPB=61.875;DPRA=0;EPP=33.4109;EPPR=89.8692;GTI=0;LEN=1;MEANALT=2;MQM=35.5;MQMR=60;NS=3;NUMALT=2;ODDS=0;PAIRED=0.142857;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=364;QR=1536;RO=40;RPL=0;RPP=33.4109;RPPR=89.8692;RPR=14;RUN=1;SAF=14;SAP=33.4109;SAR=0;SRF=40;SRP=89.8692;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|1:27:17,4,6:17:660:4,6:48,124:-3.18314,-6.25629,-59.4277,0,-52.4407,-52.6603 0|1:15:9,2,4:9:334:2,4:24,115:-6.01514,-7.74365,-34.5383,0,-26.567,-26.3532 0|1:19:14,0,4:14:542:0,4:0,125:-5.68723,-9.90165,-54.511,0,-44.77,-43.5659 dDocent_Contig_7910 82 . G A 1247.74 . AB=0.731343;ABP=34.1563;AC=3;AF=0.5;AN=6;AO=49;CIGAR=1X;DP=67;DPB=67;DPRA=0;EPP=109.412;EPPR=42.0968;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=1661;QR=613;RO=18;RPL=49;RPP=109.412;RPPR=42.0968;RPR=0;RUN=1;SAF=49;SAP=109.412;SAR=0;SRF=18;SRP=42.0968;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:45:9,36:9:314:36:1214:-96.0148,0,-15.0516 0/1:5:2,3:2:58:3:103:-8.10482,0,-4.00347 0/1:17:7,10:7:241:10:344:-26.1754,0,-16.9088 dDocent_Contig_7911 8 . G A 1492.89 . AB=0.607143;ABP=11.386;AC=3;AF=0.5;AN=6;AO=51;CIGAR=1X1M;DP=84;DPB=84;DPRA=0;EPP=113.755;EPPR=48.6112;GTI=0;LEN=1;MEANALT=1.66667;MQM=60;MQMR=60;NS=3;NUMALT=2;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=1956;QR=812;RO=21;RPL=0;RPP=113.755;RPPR=48.6112;RPR=51;RUN=1;SAF=51;SAP=113.755;SAR=0;SRF=21;SRP=48.6112;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|1:46:14,6,26:14:540:6,26:220,988:-76.8207,-63.057,-105.599,0,-26.3844,-36.5325 0|1:6:1,0,5:1:39:0,5:0,195:-16.118,-16.419,-19.6249,0,-3.59553,-2.09038 0|1:32:6,6,20:6:233:6,20:232,773:-61.685,-44.4346,-61.7748,0,-0.091021,-13.1261 dDocent_Contig_7913 98 . N G 352.487 . AB=0;ABP=0;AC=6;AF=1;AN=6;AO=11;CIGAR=1X;DP=11;DPB=11;DPRA=0;EPP=26.8965;EPPR=0;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=0;NS=3;NUMALT=1;ODDS=1.69407e-21;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=375;QR=0;RO=0;RPL=11;RPP=26.8965;RPPR=0;RPR=0;RUN=1;SAF=11;SAP=26.8965;SAR=0;SRF=0;SRP=0;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 1/1:4:0,4:0:0:4:139:-12.8527,-1.20412,0 1/1:6:0,6:0:0:6:201:-18.4193,-1.80618,0 1/1:1:0,1:0:0:1:35:-3.49863,-0.30103,0 dDocent_Contig_7914 16 . G A 561.639 . AB=0.255102;ABP=54.0621;AC=3;AF=0.5;AN=6;AO=25;CIGAR=1X;DP=98;DPB=98;DPRA=0;EPP=57.2971;EPPR=161.528;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=0.972603;PAO=0;PQA=0;PQR=0;PRO=0;QA=1001;QR=2856;RO=73;RPL=0;RPP=57.2971;RPPR=161.528;RPR=25;RUN=1;SAF=25;SAP=57.2971;SAR=0;SRF=73;SRP=161.528;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:56:44,12:44:1705:12:481:-26.7835,0,-136.816 0/1:18:11,7:11:427:7:279:-20.0617,0,-33.3591 0/1:24:18,6:18:724:6:241:-14.8416,0,-58.2615 dDocent_Contig_7915 114 . G A 665.286 . AB=0.571429;ABP=5.18177;AC=3;AF=0.5;AN=6;AO=28;CIGAR=1X;DP=49;DPB=49;DPRA=0;EPP=63.8115;EPPR=48.6112;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=953;QR=733;RO=21;RPL=0;RPP=63.8115;RPPR=48.6112;RPR=28;RUN=1;SAF=0;SAP=63.8115;SAR=28;SRF=0;SRP=48.6112;SRR=21;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:30:7,23:7:244:23:783:-61.7539,0,-13.2692 0/1:2:1,1:1:35:1:35:-2.89657,0,-2.89657 0/1:17:13,4:13:454:4:135:-7.36579,0,-36.0758 dDocent_Contig_7916 7 . T A 151.714 . AB=0.230769;ABP=27.5646;AC=3;AF=0.5;AN=6;AO=9;CIGAR=1X;DP=39;DPB=39;DPRA=0;EPP=22.5536;EPPR=68.1545;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=0;PAIREDR=0.6;PAO=0;PQA=0;PQR=0;PRO=0;QA=347;QR=1160;RO=30;RPL=0;RPP=22.5536;RPPR=68.1545;RPR=9;RUN=1;SAF=9;SAP=22.5536;SAR=0;SRF=30;SRP=68.1545;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:16:14,2:14:539:2:74:-2.20895,0,-44.0385 0/1:8:5,3:5:194:3:117:-8.50214,0,-15.4246 0/1:15:11,4:11:427:4:156:-9.90184,0,-34.2697 dDocent_Contig_7918 67 . T C 127.584 . AB=0.333333;ABP=7.35324;AC=1;AF=0.166667;AN=6;AO=6;CIGAR=1X;DP=27;DPB=27;DPRA=4;EPP=16.0391;EPPR=48.6112;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=0.904762;PAO=0;PQA=0;PQR=0;PRO=0;QA=215;QR=696;RO=21;RPL=6;RPP=16.0391;RPPR=48.6112;RPR=0;RUN=1;SAF=6;SAP=16.0391;SAR=0;SRF=21;SRP=48.6112;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:18:12,6:12:396:6:215:-14.2805,0,-30.5373 0/0:8:8,0:8:268:0:0:0,-2.40824,-24.4458 0/0:1:1,0:1:32:0:0:0,-0.30103,-3.19931 dDocent_Contig_7919 150 . C T 1535.31 . AB=0.746479;ABP=40.4758;AC=3;AF=0.5;AN=6;AO=53;CIGAR=1X;DP=71;DPB=71;DPRA=0;EPP=118.098;EPPR=42.0968;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=1995;QR=678;RO=18;RPL=0;RPP=118.098;RPPR=42.0968;RPR=53;RUN=1;SAF=0;SAP=118.098;SAR=53;SRF=0;SRP=42.0968;SRR=18;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:43:11,32:11:400:32:1189:-94.3236,0,-23.3827 0/1:5:2,3:2:82:3:92:-7.07427,0,-6.27453 0/1:23:5,18:5:196:18:714:-57.6555,0,-11.0877 dDocent_Contig_7920 21 . A C 912.831 . AB=0.5;ABP=3.0103;AC=4;AF=0.666667;AN=6;AO=30;CIGAR=1X;DP=57;DPB=57;DPRA=0;EPP=68.1545;EPPR=61.6401;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=1222;QR=1071;RO=27;RPL=0;RPP=68.1545;RPPR=61.6401;RPR=30;RUN=1;SAF=30;SAP=68.1545;SAR=0;SRF=27;SRP=61.6401;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:36:13,23:13:519:23:937:-73.7928,0,-36.2203 1/1:3:0,3:0:0:3:123:-11.4648,-0.90309,0 0/1:18:14,4:14:552:4:162:-9.54821,0,-44.602 dDocent_Contig_7921 36 . T C 369.424 . AB=0.333333;ABP=13.8677;AC=2;AF=0.333333;AN=6;AO=16;CIGAR=1X;DP=62;DPB=62;DPRA=0;EPP=37.7539;EPPR=102.898;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=630;QR=1809;RO=46;RPL=0;RPP=37.7539;RPPR=102.898;RPR=16;RUN=1;SAF=16;SAP=37.7539;SAR=0;SRF=46;SRP=102.898;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:18:10,8:10:402:8:318:-23.5655,0,-31.1205 0/0:17:16,1:16:610:1:38:0,-1.32024,-51.432 0/1:27:20,7:20:797:7:274:-16.8997,0,-63.92 dDocent_Contig_7922 73 . C T 403.172 . AB=0.479167;ABP=3.19126;AC=3;AF=0.5;AN=6;AO=23;CIGAR=2X;DP=48;DPB=48;DPRA=0;EPP=52.9542;EPPR=55.1256;GTI=0;LEN=1;MEANALT=1.33333;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=3.46945e-18;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=659;QR=777;RO=24;RPL=23;RPP=52.9542;RPPR=55.1256;RPR=0;RUN=1;SAF=23;SAP=52.9542;SAR=0;SRF=24;SRP=55.1256;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|1:15:7,8:7:233:8:235:-16.925,0,-16.7811 0|1:29:15,13:15:482:13:381:-26.0158,0,-35.1294 0|1:4:2,2:2:62:2:43:-2.88022,0,-4.68482 dDocent_Contig_7923 95 . C T 46.6102 . AB=0.272727;ABP=7.94546;AC=1;AF=0.166667;AN=6;AO=3;CIGAR=1X;DP=29;DPB=29;DPRA=1.22222;EPP=9.52472;EPPR=59.4686;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=105;QR=905;RO=26;RPL=3;RPP=9.52472;RPPR=59.4686;RPR=0;RUN=1;SAF=3;SAP=9.52472;SAR=0;SRF=26;SRP=59.4686;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:14:14,0:14:488:0:0:0,-4.21442,-44.2517 0/1:11:8,3:8:279:3:105:-6.48483,0,-22.1377 0/0:4:4,0:4:138:0:0:0,-1.20412,-12.7604 dDocent_Contig_7924 14 . T G 2367.63 . AB=0.634921;ABP=22.9327;AC=3;AF=0.5;AN=6;AO=80;CIGAR=1X;DP=126;DPB=126;DPRA=0;EPP=176.728;EPPR=102.898;GTI=0;LEN=1;MEANALT=1;MQM=59.4;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=0.9875;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=3132;QR=1825;RO=46;RPL=0;RPP=176.728;RPPR=102.898;RPR=80;RUN=1;SAF=80;SAP=176.728;SAR=0;SRF=46;SRP=102.898;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:65:17,48:17:683:48:1889:-150.646,0,-42.2311 0/1:21:12,9:12:482:9:362:-26.6214,0,-37.4087 0/1:40:17,23:17:660:23:881:-65.0186,0,-47.6857 dDocent_Contig_7925 9 . C T 82.0092 . AB=0.4;ABP=3.87889;AC=1;AF=0.166667;AN=6;AO=4;CIGAR=1X;DP=26;DPB=26;DPRA=1.25;EPP=11.6962;EPPR=50.7827;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=141;QR=847;RO=22;RPL=0;RPP=11.6962;RPPR=50.7827;RPR=4;RUN=1;SAF=4;SAP=11.6962;SAR=0;SRF=22;SRP=50.7827;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:13:13,0:13:503:0:0:0,-3.91339,-45.6183 0/0:3:3,0:3:112:0:0:0,-0.90309,-10.4463 0/1:10:6,4:6:232:4:141:-10.0246,0,-18.2388 dDocent_Contig_7926 56 . A G 56.3556 . AB=0.214286;ABP=12.937;AC=1;AF=0.166667;AN=6;AO=3;CIGAR=1X;DP=24;DPB=24;DPRA=2.8;EPP=9.52472;EPPR=48.6112;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=8.67362e-19;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=122;QR=815;RO=21;RPL=3;RPP=9.52472;RPPR=48.6112;RPR=0;RUN=1;SAF=3;SAP=9.52472;SAR=0;SRF=21;SRP=48.6112;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:14:11,3:11:444:3:122:-7.15807,0,-36.1014 0/0:2:2,0:2:81:0:0:0,-0.60206,-7.68573 0/0:8:8,0:8:290:0:0:0,-2.40824,-26.4368 dDocent_Contig_7927 195 . C G 672.726 . AB=0.555556;ABP=3.9754;AC=4;AF=0.666667;AN=6;AO=23;CIGAR=1X;DP=39;DPB=39;DPRA=0;EPP=52.9542;EPPR=37.7539;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=895;QR=634;RO=16;RPL=23;RPP=52.9542;RPPR=37.7539;RPR=0;RUN=1;SAF=0;SAP=52.9542;SAR=23;SRF=0;SRP=37.7539;SRR=16;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:28:10,18:10:400:18:703:-55.1686,0,-27.93 1/1:3:0,3:0:0:3:114:-10.6315,-0.90309,0 0/1:8:6,2:6:234:2:78:-4.99506,0,-19.0224 dDocent_Contig_7928 107 . N T 272.495 . AB=0;ABP=0;AC=4;AF=1;AN=4;AO=9;CIGAR=1X;DP=9;DPB=9;DPRA=0;EPP=22.5536;EPPR=0;GTI=0;LEN=1;MEANALT=1;MQM=56.4444;MQMR=0;NS=2;NUMALT=1;ODDS=0;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=300;QR=0;RO=0;RPL=0;RPP=22.5536;RPPR=0;RPR=9;RUN=1;SAF=0;SAP=22.5536;SAR=9;SRF=0;SRP=0;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL ./.:.:.:.:.:.:.:. 1/1:2:0,2:0:0:2:67:-6.36304,-0.60206,0 1/1:7:0,7:0:0:7:233:-20.5848,-2.10721,0 dDocent_Contig_7929 18 . G T 377.428 . AB=0.110687;ABP=1037.76;AC=1;AF=0.166667;AN=6;AO=197;CIGAR=1X;DP=2285;DPB=2285;DPRA=0;EPP=430.79;EPPR=4365.5;GTI=0;LEN=1;MEANALT=3;MQM=42.5838;MQMR=45.5525;NS=3;NUMALT=1;ODDS=1.11022e-16;PAIRED=0.659898;PAIREDR=0.661025;PAO=0;PQA=0;PQR=0;PRO=0;QA=7708;QR=79845;RO=2009;RPL=0;RPP=430.79;RPPR=4365.5;RPR=197;RUN=1;SAF=197;SAP=430.79;SAR=0;SRF=2009;SRP=4365.5;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:859:770,50:770:30620:50:1955:0,-90.9883,-2285.4 0/0:640:561,60:561:22281:60:2359:0,-1.50313,-1597.39 0/1:786:678,87:678:26944:87:3394:-39.5667,0,-1939.93 dDocent_Contig_7930 10 . G T 893.096 . AB=0.375;ABP=14.9534;AC=3;AF=0.5;AN=6;AO=33;CIGAR=1X3M2X3M1X3M1X;DP=88;DPB=88;DPRA=0;EPP=74.6689;EPPR=105.07;GTI=0;LEN=1;MEANALT=1.66667;MQM=59.7273;MQMR=60;NS=3;NUMALT=2;ODDS=0;PAIRED=0.030303;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=1314;QR=1812;RO=47;RPL=0;RPP=74.6689;RPPR=105.07;RPR=33;RUN=1;SAF=33;SAP=74.6689;SAR=0;SRF=47;SRP=105.07;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|1:46:25,6,13:25:950:6,13:239,516:-34.9536,-22.7975,-98.8791,0,-58.2016,-73.9725 0|1:3:1,0,2:1:40:0,2:0,79:-6.59454,-6.89557,-10.1923,0,-3.69465,-3.09259 0|1:39:21,0,18:21:822:0,18:0,719:-53.2727,-59.5944,-127.179,0,-67.9803,-62.5618 dDocent_Contig_7931 9 . C T 291.897 . AB=0.363636;ABP=8.34028;AC=2;AF=0.333333;AN=6;AO=12;CIGAR=1X;DP=35;DPB=35;DPRA=8.25;EPP=29.068;EPPR=52.9542;GTI=0;LEN=1;MEANALT=1;MQM=57.9167;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=466;QR=881;RO=23;RPL=0;RPP=29.068;RPPR=52.9542;RPR=12;RUN=1;SAF=12;SAP=29.068;SAR=0;SRF=23;SRP=52.9542;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:20:10,10:10:384:10:388:-29.2175,0,-28.8949 0/0:2:2,0:2:77:0:0:0,-0.60206,-7.30914 0/1:13:11,2:11:420:2:78:-3.49008,0,-34.2382 dDocent_Contig_7932 35 . T C 440.482 . AB=0.16;ABP=78.317;AC=3;AF=0.5;AN=6;AO=12;CIGAR=1X4M;DP=94;DPB=94;DPRA=0;EPP=29.068;EPPR=144.156;GTI=0;LEN=1;MEANALT=2;MQM=60;MQMR=60;NS=3;NUMALT=2;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=478;QR=2577;RO=65;RPL=0;RPP=29.068;RPPR=144.156;RPR=12;RUN=1;SAF=12;SAP=29.068;SAR=0;SRF=65;SRP=144.156;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|1:63:47,6,10:47:1864:6,10:237,396:-18.4445,-13.0924,-164.721,0,-133.935,-150.425 0|1:12:4,6,2:4:158:6,2:241,82:-18.649,0,-11.1855,-13.0829,-6.21854,-25.4797 0|1:19:14,5,0:14:555:5,0:198,0:-12.4776,0,-44.5746,-16.692,-46.0797,-62.3761 dDocent_Contig_7933 41 . C A 594.236 . AB=0.0588235;ABP=89.2305;AC=0;AF=0;AN=6;AO=3;CIGAR=3M1X4M1X8M;DP=69;DPB=66.3529;DPRA=0;EPP=9.52472;EPPR=87.6977;GTI=0;LEN=1;MEANALT=2.5;MQM=60;MQMR=60;NS=3;NUMALT=3;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=122;QR=1518;RO=39;RPL=0;RPP=9.52472;RPPR=87.6977;RPR=3;RUN=1;SAF=3;SAP=9.52472;SAR=0;SRF=39;SRP=87.6977;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|0:36:26,1,0,9:26:1013:1,0,9:40,0,363:-22.0987,-26.6307,-109.577,-29.9255,-109.878,-113.173,0,-79.9517,-83.2472,-80.5379 0|0:18:9,0,0,8:9:350:0,0,8:0,0,326:-24.192,-26.9012,-55.6535,-26.9012,-55.6535,-55.6535,0,-28.7511,-28.7511,-26.3429 0|0:15:4,2,3,6:4:155:2,3,6:82,118,241:-18.6557,-13.0897,-25.2178,-10.156,-16.1138,-21.9812,0,-5.95562,-3.02205,-10.922 dDocent_Contig_7934 62 . G A 335.567 . AB=0.15873;ABP=66.7413;AC=3;AF=0.500001;AN=6;AO=10;CIGAR=1X7M;DP=70;DPB=70;DPRA=0;EPP=24.725;EPPR=72.4974;GTI=0;LEN=1;MEANALT=4;MQM=60;MQMR=60;NS=3;NUMALT=3;ODDS=1.38778e-17;PAIRED=0.8;PAIREDR=0.90625;PAO=0;PQA=0;PQR=0;PRO=0;QA=396;QR=1141;RO=32;RPL=10;RPP=24.725;RPPR=72.4974;RPR=0;RUN=1;SAF=10;SAP=24.725;SAR=0;SRF=32;SRP=72.4974;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|1:52:23,9,10,6:23:828:9,10,6:342,393,240:-25.4031,-4.28251,-69.1134,0,-39.4925,-64.5328,-12.5553,-52.05,-47.7697,-78.294 0|1:7:5,1,0,0:5:180:1,0,0:37,0,0:-1.52187,0,-14.3775,-3.02702,-14.6786,-17.7068,-3.02702,-14.6786,-17.7068,-17.7068 0|1:11:4,2,0,4:4:133:2,0,4:74,0,156:-11.6307,-6.78538,-16.9219,-12.8349,-17.5239,-23.5794,0,-4.6783,-10.7409,-9.53675 dDocent_Contig_7935 15 . G A 768.912 . AB=0.538462;ABP=3.67845;AC=2;AF=0.333333;AN=6;AO=28;CIGAR=1X;DP=66;DPB=66;DPRA=1.85714;EPP=63.8115;EPPR=85.5263;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=0.973684;PAO=0;PQA=0;PQR=0;PRO=0;QA=1060;QR=1509;RO=38;RPL=0;RPP=63.8115;RPPR=85.5263;RPR=28;RUN=1;SAF=28;SAP=63.8115;SAR=0;SRF=38;SRP=85.5263;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:27:7,20:7:279:20:766:-61.1331,0,-17.3525 0/0:14:14,0:14:547:0:0:0,-4.21442,-49.5682 0/1:25:17,8:17:683:8:294:-19.281,0,-54.2725 dDocent_Contig_7936 15 . T A 161.424 . AB=0.333333;ABP=7.35324;AC=4;AF=0.666667;AN=6;AO=7;CIGAR=1M1D1X;DP=19;DPB=16.6667;DPRA=0;EPP=18.2106;EPPR=26.8965;GTI=0;LEN=1;MEANALT=1.33333;MQM=54.5714;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=0.857143;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=284;QR=432;RO=11;RPL=0;RPP=18.2106;RPPR=26.8965;RPR=7;RUN=1;SAF=7;SAP=18.2106;SAR=0;SRF=11;SRP=26.8965;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|1:8:6,2:6:245:2:80:-5.18355,0,-20.0212 1|1:1:0,1:0:0:1:40:-2.19321,-0.30103,0 0|1:10:5,4:5:187:4:164:-12.2868,0,-14.3443 dDocent_Contig_7937 14 . C A 3827.02 . AB=0.696629;ABP=62.7868;AC=3;AF=0.5;AN=6;AO=124;CIGAR=1X;DP=178;DPB=178;DPRA=0;EPP=272.273;EPPR=120.27;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=4901;QR=2159;RO=54;RPL=0;RPP=272.273;RPPR=120.27;RPR=124;RUN=1;SAF=124;SAP=272.273;SAR=0;SRF=54;SRP=120.27;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:85:32,53:32:1275:53:2094:-163.066,0,-89.4316 0/1:48:6,42:6:241:42:1670:-136.086,0,-7.61723 0/1:45:16,29:16:643:29:1137:-89.0728,0,-44.658 dDocent_Contig_7941 182 . C T 32.9633 . AB=0.285714;ABP=5.80219;AC=1;AF=0.25;AN=4;AO=2;CIGAR=1X3M1X;DP=14;DPB=14;DPRA=1;EPP=7.35324;EPPR=29.068;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=2;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=78;QR=484;RO=12;RPL=2;RPP=7.35324;RPPR=29.068;RPR=0;RUN=1;SAF=0;SAP=7.35324;SAR=2;SRF=0;SRP=29.068;SRR=12;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|0:7:7,0:7:281:0:0:0,-2.10721,-25.6622 .:.:.:.:.:.:.:. 0|1:7:5,2:5:203:2:78:-5.29609,0,-16.5458 dDocent_Contig_7942 27 . T G 73.6414 . AB=0.166667;ABP=31.9633;AC=1;AF=0.166667;AN=6;AO=6;CIGAR=1X;DP=53;DPB=53;DPRA=4.8;EPP=16.0391;EPPR=102.898;GTI=0;LEN=1;MEANALT=1.5;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=3.46945e-18;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=234;QR=1767;RO=46;RPL=0;RPP=16.0391;RPPR=102.898;RPR=6;RUN=1;SAF=6;SAP=16.0391;SAR=0;SRF=46;SRP=102.898;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:30:24,5:24:931:5:196:-8.88693,0,-74.9711 0/0:5:5,0:5:187:0:0:0,-1.50515,-17.1907 0/0:18:17,1:17:649:1:38:0,-1.62127,-54.946 dDocent_Contig_7943 98 . N C 416.385 . AB=0.454545;ABP=3.20771;AC=6;AF=1;AN=6;AO=5;CIGAR=10X;DP=18;DPB=26.8;DPRA=0.785714;EPP=13.8677;EPPR=0;GTI=0;LEN=1;MEANALT=2;MQM=60;MQMR=0;NS=3;NUMALT=3;ODDS=6.93889e-18;PAIRED=1;PAIREDR=0;PAO=29.3333;PQA=989;PQR=0;PRO=0;QA=168;QR=0;RO=0;RPL=0;RPP=13.8677;RPPR=0;RPR=5;RUN=1;SAF=0;SAP=13.8677;SAR=5;SRF=0;SRP=0;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 1|1:7:0,6,1,0:0:0:6,1,0:200,15,0:-16.5231,-1.80618,0,-15.5455,-0.607263,-15.2445,-16.5231,-1.80618,-15.5455,-16.5231 1|1:9:0,5,0,4:0:0:5,0,4:166,0,134:-23.4436,-10.1979,-8.69276,-23.4436,-10.1979,-23.4436,-12.7071,0,-12.7071,-11.503 1|1:2:0,1,0,1:0:0:1,0,1:34,0,34:-5.14966,-3.09788,-2.79685,-5.14966,-3.09788,-5.14966,-3.09465,0,-3.09465,-2.79362 dDocent_Contig_7944 8 . G A 286.493 . AB=0.352941;ABP=9.39698;AC=2;AF=0.333333;AN=6;AO=12;CIGAR=1X;DP=35;DPB=35;DPRA=17;EPP=29.068;EPPR=52.9542;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=3.46945e-18;PAIRED=1;PAIREDR=0.913043;PAO=0;PQA=0;PQR=0;PRO=0;QA=463;QR=875;RO=23;RPL=0;RPP=29.068;RPPR=52.9542;RPR=12;RUN=1;SAF=12;SAP=29.068;SAR=0;SRF=23;SRP=52.9542;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:22:15,7:15:565:7:271:-18.1338,0,-44.5639 0/0:1:1,0:1:39:0:0:0,-0.30103,-3.89656 0/1:12:7,5:7:271:5:192:-14.0376,0,-21.1441 dDocent_Contig_7945 56 . A G 812.598 . AB=0.460317;ABP=3.872;AC=3;AF=0.5;AN=6;AO=29;CIGAR=1X;DP=63;DPB=63;DPRA=0;EPP=65.983;EPPR=74.6689;GTI=0;LEN=1;MEANALT=1.33333;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=1161;QR=1283;RO=33;RPL=29;RPP=65.983;RPPR=74.6689;RPR=0;RUN=1;SAF=29;SAP=65.983;SAR=0;SRF=33;SRP=74.6689;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:31:25,5:25:967:5:199:-9.1164,0,-78.1993 0/1:3:2,1:2:81:1:41:-3.19148,0,-6.78264 0/1:29:6,23:6:235:23:921:-74.4656,0,-12.7918 dDocent_Contig_7946 1 . N G 133.848 . AB=0;ABP=0;AC=4;AF=1;AN=4;AO=4;CIGAR=1X;DP=4;DPB=4;DPRA=0;EPP=11.6962;EPPR=0;GTI=0;LEN=1;MEANALT=1;MQM=47.5;MQMR=0;NS=2;NUMALT=1;ODDS=0;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=141;QR=0;RO=0;RPL=0;RPP=11.6962;RPPR=0;RPR=4;RUN=1;SAF=0;SAP=11.6962;SAR=4;SRF=0;SRP=0;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 1/1:2:0,2:0:0:2:69:-6.24921,-0.60206,0 ./.:.:.:.:.:.:.:. 1/1:2:0,2:0:0:2:72:-6.83347,-0.60206,0 dDocent_Contig_7947 7 . T A 378.251 . AB=0.5;ABP=3.0103;AC=2;AF=0.333333;AN=6;AO=15;CIGAR=1X;DP=32;DPB=32;DPRA=7.5;EPP=35.5824;EPPR=39.9253;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=552;QR=642;RO=17;RPL=0;RPP=35.5824;RPPR=39.9253;RPR=15;RUN=1;SAF=15;SAP=35.5824;SAR=0;SRF=17;SRP=39.9253;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:18:8,10:8:300:10:372:-28.4097,0,-21.9369 0/1:12:7,5:7:268:5:180:-12.9379,0,-20.8716 0/0:2:2,0:2:74:0:0:0,-0.60206,-7.02543 dDocent_Contig_7948 59 . C T 464.606 . AB=0.5;ABP=3.0103;AC=3;AF=0.5;AN=6;AO=18;CIGAR=1X;DP=36;DPB=36;DPRA=0;EPP=42.0968;EPPR=42.0968;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=686;QR=687;RO=18;RPL=18;RPP=42.0968;RPPR=42.0968;RPR=0;RUN=1;SAF=18;SAP=42.0968;SAR=0;SRF=18;SRP=42.0968;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:8:3,5:3:122:5:183:-14.4112,0,-8.96425 0/1:16:9,7:9:334:7:273:-20.1179,0,-25.5814 0/1:12:6,6:6:231:6:230:-17.4543,0,-17.5453 dDocent_Contig_7949 31 . A G 182.529 . AB=0.266667;ABP=17.1973;AC=1;AF=0.166667;AN=6;AO=8;CIGAR=1X1M1X;DP=47;DPB=47;DPRA=3.52941;EPP=20.3821;EPPR=87.6977;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=1.73472e-18;PAIRED=1;PAIREDR=0.948718;PAO=0;PQA=0;PQR=0;PRO=0;QA=316;QR=1552;RO=39;RPL=0;RPP=20.3821;RPPR=87.6977;RPR=8;RUN=1;SAF=8;SAP=20.3821;SAR=0;SRF=39;SRP=87.6977;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|1:30:22,8:22:878:8:316:-19.7758,0,-70.2998 0|0:7:7,0:7:278:0:0:0,-2.10721,-25.3899 0|0:10:10,0:10:396:0:0:0,-3.0103,-35.9992 dDocent_Contig_7950 56 . G C 2427.24 . AB=0.684211;ABP=36.611;AC=2;AF=0.333333;AN=6;AO=78;CIGAR=1X;DP=118;DPB=118;DPRA=14.25;EPP=172.385;EPPR=89.8692;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=3112;QR=1558;RO=40;RPL=78;RPP=172.385;RPPR=89.8692;RPR=0;RUN=1;SAF=78;SAP=172.385;SAR=0;SRF=40;SRP=89.8692;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:79:23,56:23:890:56:2243:-178.259,0,-56.6249 0/0:4:4,0:4:154:0:0:0,-1.20412,-14.2303 0/1:35:13,22:13:514:22:869:-67.9882,0,-36.0694 dDocent_Contig_7951 7 . T C 186.423 . AB=0.32;ABP=10.0459;AC=1;AF=0.166667;AN=6;AO=8;CIGAR=1X;DP=71;DPB=71;DPRA=1.08696;EPP=20.3821;EPPR=99.8304;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=0;PAIREDR=0.31746;PAO=0;PQA=0;PQR=0;PRO=0;QA=307;QR=2388;RO=63;RPL=0;RPP=20.3821;RPPR=139.813;RPR=8;RUN=1;SAF=8;SAP=20.3821;SAR=0;SRF=58;SRP=99.8304;SRR=5;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:44:44,0:44:1675:0:0:0,-13.2453,-151.015 0/0:2:2,0:2:74:0:0:0,-0.60206,-7.02543 0/1:25:17,8:17:639:8:307:-20.4659,0,-50.3179 dDocent_Contig_7952 13 . G T 160.08 . AB=0.318182;ABP=9.32731;AC=2;AF=0.333333;AN=6;AO=7;CIGAR=1X;DP=26;DPB=26;DPRA=2.75;EPP=18.2106;EPPR=44.2683;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=282;QR=757;RO=19;RPL=0;RPP=18.2106;RPPR=44.2683;RPR=7;RUN=1;SAF=7;SAP=18.2106;SAR=0;SRF=19;SRP=44.2683;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:14:10,4:10:397:4:163:-10.844,0,-31.8726 0/1:8:5,3:5:196:3:119:-8.68677,0,-15.604 0/0:4:4,0:4:164:0:0:0,-1.20412,-15.1499 dDocent_Contig_7954 22 . A C 49.5918 . AB=0.3;ABP=6.48466;AC=1;AF=0.166667;AN=6;AO=3;CIGAR=1X;DP=47;DPB=47;DPRA=0.540541;EPP=9.52472;EPPR=98.5551;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=0.840909;PAO=0;PQA=0;PQR=0;PRO=0;QA=105;QR=1647;RO=44;RPL=0;RPP=9.52472;RPPR=98.5551;RPR=3;RUN=1;SAF=3;SAP=9.52472;SAR=0;SRF=44;SRP=98.5551;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:27:27,0:27:1018:0:0:0,-8.12781,-91.9231 0/0:10:10,0:10:360:0:0:0,-3.0103,-32.7391 0/1:10:7,3:7:269:3:105:-6.78308,0,-21.5644 dDocent_Contig_7958 57 . G A 470.832 . AB=0.372549;ABP=10.206;AC=3;AF=0.5;AN=6;AO=19;CIGAR=2X;DP=51;DPB=51;DPRA=0;EPP=44.2683;EPPR=72.4974;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=0.842105;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=743;QR=1190;RO=32;RPL=19;RPP=44.2683;RPPR=72.4974;RPR=0;RUN=1;SAF=19;SAP=44.2683;SAR=0;SRF=32;SRP=72.4974;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|1:29:22,7:22:815:7:275:-16.3863,0,-64.9362 0|1:6:3,3:3:116:3:112:-8.63754,0,-9.01136 0|1:16:7,9:7:259:9:356:-27.5823,0,-18.844 dDocent_Contig_7960 27 . T G 83.7037 . AB=0;ABP=0;AC=2;AF=0.333333;AN=6;AO=2;CIGAR=1X3M1X1M1X;DP=36;DPB=36;DPRA=0.08;EPP=7.35324;EPPR=61.6401;GTI=0;LEN=1;MEANALT=1;MQM=46;MQMR=60;NS=3;NUMALT=2;ODDS=0;PAIRED=0;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=78;QR=1072;RO=27;RPL=0;RPP=7.35324;RPPR=61.6401;RPR=2;RUN=1;SAF=2;SAP=7.35324;SAR=0;SRF=27;SRP=61.6401;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|0:25:21,4,0:21:838:4,0:154,0:0,-0.515816,-68.7274,-6.32163,-69.9315,-75.5144 0|0:9:6,3,0:6:234:3,0:119,0:-2.60041,0,-18.721,-4.40659,-19.6241,-23.7744 1|1:2:0,0,2:0:0:0,2:0,78:-7.25686,-7.25686,-7.25686,-0.60206,-0.60206,0 dDocent_Contig_7961 82 . G A 169.877 . AB=0.125;ABP=335.246;AC=3;AF=0.5;AN=6;AO=34;CIGAR=1X;DP=272;DPB=272;DPRA=0;EPP=76.8404;EPPR=519.821;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=1148;QR=8015;RO=238;RPL=34;RPP=76.8404;RPPR=519.821;RPR=0;RUN=1;SAF=34;SAP=76.8404;SAR=0;SRF=238;SRP=519.821;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:206:181,25:181:6126:25:841:-13.9865,0,-489.469 0/1:25:22,3:22:709:3:104:-2.17734,0,-56.5859 0/1:41:35,6:35:1180:6:203:-6.25976,0,-94.1575 dDocent_Contig_7963 11 . G A 199.277 . AB=0.290323;ABP=14.8483;AC=2;AF=0.333333;AN=6;AO=9;CIGAR=1X;DP=42;DPB=42;DPRA=1.40909;EPP=22.5536;EPPR=74.6689;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=0.909091;PAO=0;PQA=0;PQR=0;PRO=0;QA=356;QR=1265;RO=33;RPL=0;RPP=22.5536;RPPR=74.6689;RPR=9;RUN=1;SAF=9;SAP=22.5536;SAR=0;SRF=33;SRP=74.6689;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:11:11,0:11:395:0:0:0,-3.31133,-35.878 0/1:14:11,3:11:445:3:112:-6.2293,0,-36.1908 0/1:17:11,6:11:425:6:244:-17.2213,0,-33.4725 dDocent_Contig_7964 30 . C T 617.873 . AB=0.237705;ABP=75.9148;AC=3;AF=0.5;AN=6;AO=29;CIGAR=1X;DP=122;DPB=122;DPRA=0;EPP=65.983;EPPR=204.957;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=1144;QR=3736;RO=93;RPL=0;RPP=65.983;RPPR=204.957;RPR=29;RUN=1;SAF=29;SAP=65.983;SAR=0;SRF=93;SRP=204.957;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:91:70,21:70:2804:21:821:-46.8014,0,-225.073 0/1:7:3,4:3:123:4:164:-13.0427,0,-9.35758 0/1:24:20,4:20:809:4:159:-7.46611,0,-65.9003 dDocent_Contig_7966 65 . T G 113.482 . AB=0.25;ABP=16.0391;AC=2;AF=0.333333;AN=6;AO=6;CIGAR=1X;DP=28;DPB=28;DPRA=3;EPP=16.0391;EPPR=50.7827;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=237;QR=880;RO=22;RPL=6;RPP=16.0391;RPPR=50.7827;RPR=0;RUN=1;SAF=6;SAP=16.0391;SAR=0;SRF=22;SRP=50.7827;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:15:12,3:12:479:3:122:-6.85704,0,-38.9439 0/1:9:6,3:6:245:3:115:-8.01394,0,-19.7202 0/0:4:4,0:4:156:0:0:0,-1.20412,-14.4157 dDocent_Contig_7967 16 . T G 128.762 . AB=0.15625;ABP=35.8538;AC=1;AF=0.166667;AN=6;AO=5;CIGAR=1M1D3M2X2M1X;DP=33;DPB=32.5;DPRA=16;EPP=13.8677;EPPR=52.9542;GTI=0;LEN=1;MEANALT=2;MQM=60;MQMR=60;NS=3;NUMALT=2;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=200;QR=906;RO=23;RPL=0;RPP=13.8677;RPPR=52.9542;RPR=5;RUN=1;SAF=5;SAP=13.8677;SAR=0;SRF=23;SRP=52.9542;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|0:17:14,1,2:14:551:1,2:40,66:-1.07373,-1.96982,-47.0511,0,-42.0254,-44.7188 0|0:1:0,0,1:0:0:0,1:0,39:-3.89656,-3.89656,-3.89656,-0.30103,-0.30103,0 0|1:15:9,4,2:9:355:4,2:160,76:-10.4841,0,-28.0172,-6.96707,-22.991,-35.5708 dDocent_Contig_7969 22 . A G 254.248 . AB=0.255319;ABP=27.4509;AC=3;AF=0.5;AN=6;AO=12;CIGAR=1X;DP=47;DPB=47;DPRA=0;EPP=29.068;EPPR=79.0118;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=488;QR=1387;RO=35;RPL=0;RPP=29.068;RPPR=79.0118;RPR=12;RUN=1;SAF=12;SAP=29.068;SAR=0;SRF=35;SRP=79.0118;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:25:22,3:22:865:3:121:-3.75424,0,-70.6296 0/1:3:2,1:2:80:1:41:-3.19148,0,-6.6887 0/1:19:11,8:11:442:8:326:-23.9903,0,-34.4154 dDocent_Contig_7970 67 . T G 34.5374 . AB=0.25;ABP=7.35324;AC=1;AF=0.166667;AN=6;AO=2;CIGAR=1X;DP=41;DPB=41;DPRA=0.484848;EPP=7.35324;EPPR=87.6977;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=0;PAIREDR=0.948718;PAO=0;PQA=0;PQR=0;PRO=0;QA=81;QR=1210;RO=39;RPL=2;RPP=7.35324;RPPR=87.6977;RPR=0;RUN=1;SAF=2;SAP=7.35324;SAR=0;SRF=39;SRP=87.6977;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:21:21,0:21:674:0:0:0,-6.32163,-60.9575 0/1:8:6,2:6:189:2:81:-5.27749,0,-14.9123 0/0:12:12,0:12:347:0:0:0,-3.61236,-31.5119 dDocent_Contig_7971 12 . T G 32.4675 . AB=0.222222;ABP=9.04217;AC=1;AF=0.166667;AN=6;AO=2;CIGAR=1X;DP=51;DPB=51;DPRA=0.428571;EPP=7.35324;EPPR=109.412;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=82;QR=1948;RO=49;RPL=0;RPP=7.35324;RPPR=109.412;RPR=2;RUN=1;SAF=2;SAP=7.35324;SAR=0;SRF=49;SRP=109.412;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:24:24,0:24:960:0:0:0,-7.22472,-86.6985 0/0:18:18,0:18:701:0:0:0,-5.41854,-63.4087 0/1:9:7,2:7:287:2:82:-5.07041,0,-23.496 dDocent_Contig_7972 24 . C T 34.9945 . AB=0.1875;ABP=16.582;AC=2;AF=0.333333;AN=6;AO=3;CIGAR=1X;DP=105;DPB=105;DPRA=0.0898876;EPP=9.52472;EPPR=224.5;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=118;QR=4081;RO=102;RPL=0;RPP=9.52472;RPPR=224.5;RPR=3;RUN=1;SAF=3;SAP=9.52472;SAR=0;SRF=102;SRP=224.5;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:89:89,0:89:3563:0:0:0,-26.7917,-320.699 0/1:7:5,2:5:199:2:78:-5.29609,0,-16.1811 0/1:9:8,1:8:319:1:40:-1.28641,0,-26.3673 dDocent_Contig_7974 8 . G T 51.7309 . AB=0.230769;ABP=11.1951;AC=1;AF=0.166667;AN=6;AO=3;CIGAR=1X;DP=54;DPB=54;DPRA=0.634146;EPP=9.52472;EPPR=113.755;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=8.67362e-19;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=117;QR=1951;RO=51;RPL=0;RPP=9.52472;RPPR=113.755;RPR=3;RUN=1;SAF=3;SAP=9.52472;SAR=0;SRF=51;SRP=113.755;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:33:33,0:33:1266:0:0:0,-9.93399,-114.229 0/0:8:8,0:8:299:0:0:0,-2.40824,-27.2643 0/1:13:10,3:10:386:3:117:-6.99699,0,-31.1838 dDocent_Contig_7975 36 . C T 1070.01 . AB=0.544118;ABP=4.1599;AC=3;AF=0.5;AN=6;AO=37;CIGAR=1X;DP=68;DPB=68;DPRA=0;EPP=83.3548;EPPR=70.3259;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=1466;QR=1238;RO=31;RPL=0;RPP=83.3548;RPPR=70.3259;RPR=37;RUN=1;SAF=37;SAP=83.3548;SAR=0;SRF=31;SRP=70.3259;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:39:14,25:14:563:25:984:-77.121,0,-39.2725 0/1:11:7,4:7:278:4:161:-11.5636,0,-22.0788 0/1:18:10,8:10:397:8:321:-23.8391,0,-30.6703 dDocent_Contig_7976 28 . A G 357.963 . AB=0.333333;ABP=13.8677;AC=3;AF=0.5;AN=6;AO=15;CIGAR=1X;DP=45;DPB=45;DPRA=0;EPP=35.5824;EPPR=68.1545;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=3.46945e-18;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=597;QR=1196;RO=30;RPL=0;RPP=35.5824;RPPR=68.1545;RPR=15;RUN=1;SAF=15;SAP=35.5824;SAR=0;SRF=30;SRP=68.1545;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:30:18,12:18:720:12:480:-34.5163,0,-56.0955 0/1:3:2,1:2:75:1:40:-3.09259,0,-6.2165 0/1:12:10,2:10:401:2:77:-3.69584,0,-32.8369 dDocent_Contig_7977 118 . G T 671.589 . AB=0.52;ABP=3.18402;AC=2;AF=0.333333;AN=6;AO=26;CIGAR=1X1M1X;DP=62;DPB=62;DPRA=2.08333;EPP=59.4686;EPPR=81.1833;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=945;QR=1216;RO=36;RPL=0;RPP=59.4686;RPPR=81.1833;RPR=26;RUN=1;SAF=0;SAP=59.4686;SAR=26;SRF=0;SRP=81.1833;SRR=36;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|1:44:21,23:21:711:23:835:-62.2269,0,-51.0615 0|1:6:3,3:3:101:3:110:-8.45482,0,-7.61755 0|0:12:12,0:12:404:0:0:0,-3.61236,-36.6846 dDocent_Contig_7979 8 . G A 840.239 . AB=0.426667;ABP=6.51361;AC=3;AF=0.5;AN=6;AO=32;CIGAR=1X;DP=75;DPB=75;DPRA=0;EPP=72.4974;EPPR=96.3836;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=1234;QR=1645;RO=43;RPL=0;RPP=72.4974;RPPR=96.3836;RPR=32;RUN=1;SAF=32;SAP=72.4974;SAR=0;SRF=43;SRP=96.3836;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:34:16,18:16:615:18:695:-52.6493,0,-45.4537 0/1:23:13,10:13:490:10:385:-28.0826,0,-37.5196 0/1:18:14,4:14:540:4:154:-8.81492,0,-43.5271 dDocent_Contig_7980 47 . T C 120.649 . AB=0.357143;ABP=5.49198;AC=1;AF=0.166667;AN=6;AO=5;CIGAR=1X;DP=38;DPB=38;DPRA=1.16667;EPP=13.8677;EPPR=74.6689;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=197;QR=1323;RO=33;RPL=5;RPP=13.8677;RPPR=74.6689;RPR=0;RUN=1;SAF=5;SAP=13.8677;SAR=0;SRF=33;SRP=74.6689;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:14:14,0:14:569:0:0:0,-4.21442,-51.5519 0/0:10:10,0:10:399:0:0:0,-3.0103,-36.2674 0/1:14:9,5:9:355:5:197:-13.8888,0,-28.0968 dDocent_Contig_7981 57 . G A 1250.16 . AB=0.672131;ABP=18.709;AC=3;AF=0.5;AN=6;AO=41;CIGAR=1X;DP=61;DPB=61;DPRA=0;EPP=92.0407;EPPR=46.4397;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=1643;QR=794;RO=20;RPL=41;RPP=92.0407;RPPR=46.4397;RPR=0;RUN=1;SAF=41;SAP=92.0407;SAR=0;SRF=20;SRP=46.4397;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:29:6,23:6:242:23:917:-74.105,0,-13.4275 0/1:15:4,11:4:156:11:443:-35.7079,0,-9.90137 0/1:17:10,7:10:396:7:283:-20.7261,0,-30.8748 dDocent_Contig_7982 98 . N T 171.914 . AB=0;ABP=0;AC=4;AF=1;AN=4;AO=6;CIGAR=1X;DP=6;DPB=6;DPRA=0;EPP=16.0391;EPPR=0;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=0;NS=2;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=181;QR=0;RO=0;RPL=6;RPP=16.0391;RPPR=0;RPR=0;RUN=1;SAF=6;SAP=16.0391;SAR=0;SRF=0;SRP=0;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 1/1:3:0,3:0:0:3:97:-9.05121,-0.90309,0 ./.:.:.:.:.:.:.:. 1/1:3:0,3:0:0:3:84:-7.83864,-0.90309,0 dDocent_Contig_7983 8 . G A 123.311 . AB=0.233333;ABP=21.5402;AC=2;AF=0.333333;AN=6;AO=8;CIGAR=1X;DP=69;DPB=69;DPRA=0;EPP=20.3821;EPPR=135.47;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=0.875;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=306;QR=2344;RO=61;RPL=0;RPP=20.3821;RPPR=135.47;RPR=8;RUN=1;SAF=8;SAP=20.3821;SAR=0;SRF=61;SRP=135.47;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:39:38,1:38:1466:1:39:0,-7.84361,-128.317 0/1:6:5,1:5:193:1:39:-2.09038,0,-15.9352 0/1:24:18,6:18:685:6:228:-13.6596,0,-54.7584 dDocent_Contig_7985 165 . T C 178.749 . AB=0.2;ABP=38.1882;AC=1;AF=0.166667;AN=6;AO=9;CIGAR=1X;DP=61;DPB=61;DPRA=5.625;EPP=22.5536;EPPR=115.927;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=3.46945e-18;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=362;QR=2069;RO=52;RPL=9;RPP=22.5536;RPPR=115.927;RPR=0;RUN=1;SAF=0;SAP=22.5536;SAR=9;SRF=0;SRP=115.927;SRR=52;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:45:36,9:36:1434:9:362:-19.3976,0,-115.767 0/0:3:3,0:3:118:0:0:0,-0.90309,-11.0025 0/0:13:13,0:13:517:0:0:0,-3.91339,-46.875 dDocent_Contig_7988 137 . A G 35.2233 . AB=0.117647;ABP=67.7713;AC=2;AF=0.333333;AN=6;AO=6;CIGAR=1X;DP=54;DPB=54;DPRA=8.5;EPP=16.0391;EPPR=105.07;GTI=0;LEN=1;MEANALT=1.5;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=3.46945e-18;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=240;QR=1879;RO=47;RPL=0;RPP=16.0391;RPPR=105.07;RPR=6;RUN=1;SAF=0;SAP=16.0391;SAR=6;SRF=0;SRP=105.07;SRR=47;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:38:33,4:33:1319:4:160:-3.35742,0,-107.572 0/0:3:3,0:3:118:0:0:0,-0.90309,-11.0025 0/1:13:11,2:11:442:2:80:-3.67819,0,-36.2213 dDocent_Contig_7989 42 . A T 1096.97 . AB=0.433333;ABP=6.48466;AC=3;AF=0.5;AN=6;AO=39;CIGAR=1X;DP=90;DPB=90;DPRA=0;EPP=87.6977;EPPR=111.584;GTI=0;LEN=1;MEANALT=1.33333;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=6.93889e-18;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=1570;QR=1987;RO=50;RPL=0;RPP=87.6977;RPPR=111.584;RPR=39;RUN=1;SAF=39;SAP=87.6977;SAR=0;SRF=50;SRP=111.584;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:69:35,34:35:1402:34:1366:-102.427,0,-105.665 0/1:6:5,1:5:194:1:41:-2.28839,0,-16.0243 0/1:15:10,4:10:391:4:163:-10.435,0,-30.9217 dDocent_Contig_7991 8 . G A 244.131 . AB=0.22807;ABP=39.6206;AC=2;AF=0.333333;AN=6;AO=13;CIGAR=1X;DP=83;DPB=83;DPRA=1.09615;EPP=31.2394;EPPR=155.013;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=493;QR=2660;RO=70;RPL=0;RPP=31.2394;RPPR=155.013;RPR=13;RUN=1;SAF=13;SAP=31.2394;SAR=0;SRF=70;SRP=155.013;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:37:28,9:28:1087:9:341:-19.9074,0,-86.9961 0/1:20:16,4:16:600:4:152:-8.0286,0,-48.314 0/0:26:26,0:26:973:0:0:0,-7.82678,-87.88 dDocent_Contig_7992 8 . G A 313.049 . AB=0.111111;ABP=26.6552;AC=0;AF=0;AN=6;AO=2;CIGAR=1X1M1X2M1X3M1X1M1X;DP=42;DPB=42;DPRA=0;EPP=7.35324;EPPR=42.0968;GTI=0;LEN=1;MEANALT=3;MQM=60;MQMR=60;NS=3;NUMALT=4;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=80;QR=702;RO=18;RPL=0;RPP=7.35324;RPPR=42.0968;RPR=2;RUN=1;SAF=2;SAP=7.35324;SAR=0;SRF=18;SRP=42.0968;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|0:18:5,2,4,7,0:5:196:2,4,7,0:80,158,272,0:-20.8417,-15.7553,-31.2722,-9.34389,-18.8712,-24.2587,0,-9.52513,-3.11448,-14.0093,-22.3468,-31.8742,-25.4628,-16.1165,-38.4653 0|0:10:8,0,0,1,1:8:312:0,0,1,1:0,0,37,31:-0.648695,-3.05694,-28.7433,-3.05694,-28.7433,-28.7433,0,-25.7174,-25.7174,-25.4164,-0.598375,-26.2626,-26.2626,-23.2378,-25.9616 0|0:14:5,0,0,5,4:5:194:0,0,5,4:0,0,189,159:-13.9772,-15.4823,-31.4225,-15.4823,-31.4225,-31.4225,0,-15.9345,-15.9345,-14.4294,-2.38297,-18.3277,-18.3277,-2.83956,-17.1235 dDocent_Contig_7993 7 . T C 30.4332 . AB=0.111111;ABP=62.1226;AC=1;AF=0.166667;AN=6;AO=5;CIGAR=1X;DP=71;DPB=71;DPRA=3.46154;EPP=13.8677;EPPR=141.985;GTI=0;LEN=1;MEANALT=2;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=193;QR=2418;RO=64;RPL=0;RPP=13.8677;RPPR=141.985;RPR=5;RUN=1;SAF=5;SAP=13.8677;SAR=0;SRF=64;SRP=141.985;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:45:38,5:38:1426:5:193:-4.56545,0,-115.486 0/0:2:2,0:2:68:0:0:0,-0.60206,-6.45641 0/0:24:24,0:24:924:0:0:0,-7.22472,-83.4749 dDocent_Contig_7994 9 . A G 1119.87 . AB=0.533333;ABP=3.73412;AC=3;AF=0.5;AN=6;AO=40;CIGAR=1X;DP=75;DPB=75;DPRA=0;EPP=89.8692;EPPR=79.0118;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=1542;QR=1329;RO=35;RPL=0;RPP=89.8692;RPPR=79.0118;RPR=40;RUN=1;SAF=40;SAP=89.8692;SAR=0;SRF=35;SRP=79.0118;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:54:23,31:23:868:31:1197:-91.771,0,-62.1845 0/1:6:5,1:5:194:1:36:-1.79209,0,-16.0267 0/1:15:7,8:7:267:8:309:-23.6576,0,-19.8763 dDocent_Contig_7995 62 . G A 32.289 . AB=0.190476;ABP=20.4855;AC=1;AF=0.166667;AN=6;AO=4;CIGAR=1X;DP=67;DPB=67;DPRA=0.913043;EPP=11.6962;EPPR=139.813;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=1.73472e-18;PAIRED=1;PAIREDR=0.952381;PAO=0;PQA=0;PQR=0;PRO=0;QA=123;QR=2250;RO=63;RPL=0;RPP=11.6962;RPPR=3.872;RPR=4;RUN=1;SAF=0;SAP=11.6962;SAR=4;SRF=34;SRP=3.872;SRR=29;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:34:34,0:34:1248:0:0:0,-10.235,-112.599 0/0:12:12,0:12:382:0:0:0,-3.61236,-34.6756 0/1:21:17,4:17:620:4:123:-5.05255,0,-49.8091 dDocent_Contig_7996 11 . T C 31.6078 . AB=0.0961538;ABP=150.336;AC=2;AF=0.333333;AN=6;AO=11;CIGAR=1X1M1X;DP=126;DPB=126;DPRA=0;EPP=26.8965;EPPR=219.195;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=0.913043;PAO=0;PQA=0;PQR=0;PRO=0;QA=434;QR=4535;RO=115;RPL=0;RPP=26.8965;RPPR=252.73;RPR=11;RUN=1;SAF=11;SAP=26.8965;SAR=0;SRF=111;SRP=219.195;SRR=4;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|1:84:77,7:77:3055:7:280:-0.284743,0,-249.753 0|0:22:21,1:21:811:1:36:0,-3.02438,-69.7114 0|1:20:17,3:17:669:3:118:-4.9816,0,-54.52 dDocent_Contig_7998 12 . G C 834.772 . AB=0.265152;ABP=66.2462;AC=2;AF=0.333333;AN=6;AO=35;CIGAR=1X;DP=136;DPB=136;DPRA=16.5;EPP=79.0118;EPPR=222.329;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=6.93889e-18;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=1401;QR=4028;RO=101;RPL=0;RPP=79.0118;RPPR=222.329;RPR=35;RUN=1;SAF=35;SAP=79.0118;SAR=0;SRF=101;SRP=222.329;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:91:66,25:66:2633:25:1010:-63.7998,0,-209.692 0/0:4:4,0:4:156:0:0:0,-1.20412,-14.4159 0/1:41:31,10:31:1239:10:391:-23.2001,0,-99.4397 dDocent_Contig_7999 10 . T C 773.241 . AB=0.257812;ABP=68.2223;AC=2;AF=0.333333;AN=6;AO=33;CIGAR=1X;DP=135;DPB=135;DPRA=9.14286;EPP=74.6689;EPPR=224.5;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=1319;QR=4051;RO=102;RPL=0;RPP=74.6689;RPPR=224.5;RPR=33;RUN=1;SAF=33;SAP=74.6689;SAR=0;SRF=102;SRP=224.5;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:89:64,25:64:2557:25:995:-63.0588,0,-203.471 0/0:7:7,0:7:276:0:0:0,-2.10721,-25.2092 0/1:39:31,8:31:1218:8:324:-17.7881,0,-98.1601 dDocent_Contig_8001 15 . T A 2031.63 . AB=0.225;ABP=29.2851;AC=1;AF=0.166667;AN=6;AO=9;CIGAR=1X1M2X4M;DP=103;DPB=111;DPRA=10;EPP=22.5536;EPPR=68.1545;GTI=0;LEN=1;MEANALT=2;MQM=60;MQMR=60;NS=3;NUMALT=2;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=345;QR=1172;RO=30;RPL=0;RPP=22.5536;RPPR=68.1545;RPR=9;RUN=1;SAF=9;SAP=22.5536;SAR=0;SRF=30;SRP=68.1545;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|0:59:23,0,36:23:920:0,36:0,1429:-111.104,-118.028,-193.813,0,-76.1835,-65.3464 0|0:4:0,0,4:0:0:0,4:0,160:-14.7834,-14.7834,-14.7834,-1.20412,-1.20412,0 1|0:40:7,9,24:7:252:9,24:345,916:-80.7982,-54.5974,-72.442,-7.772,0,-21.0958 dDocent_Contig_8002 61 . C T 87.154 . AB=0.75;ABP=5.18177;AC=1;AF=0.166667;AN=6;AO=4;CIGAR=1X;DP=33;DPB=33;DPRA=1.5625;EPP=11.6962;EPPR=65.983;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=57.1379;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=0.896552;PAO=0;PQA=0;PQR=0;PRO=0;QA=162;QR=1138;RO=29;RPL=4;RPP=11.6962;RPPR=65.983;RPR=0;RUN=1;SAF=4;SAP=11.6962;SAR=0;SRF=29;SRP=65.983;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:21:20,1:20:791:1:40:0,-2.32595,-65.7952 0/0:8:8,0:8:318:0:0:0,-2.40824,-28.2842 0/1:4:1,3:1:29:3:122:-10.1684,0,-1.69554 dDocent_Contig_8003 7 . T C 765.577 . AB=0.575;ABP=4.96463;AC=4;AF=0.666667;AN=6;AO=26;CIGAR=2X;DP=43;DPB=43;DPRA=0;EPP=59.4686;EPPR=39.9253;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=999;QR=650;RO=17;RPL=0;RPP=59.4686;RPPR=39.9253;RPR=26;RUN=1;SAF=26;SAP=59.4686;SAR=0;SRF=17;SRP=39.9253;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|1:30:8,22:8:301:22:844:-67.2517,0,-18.4148 1|1:3:0,3:0:0:3:116:-10.8177,-0.90309,0 0|1:10:9,1:9:349:1:39:-0.886264,0,-28.7606 dDocent_Contig_8004 46 . C T 509.807 . AB=0.291667;ABP=30.1537;AC=3;AF=0.5;AN=6;AO=21;CIGAR=1X4M;DP=72;DPB=72;DPRA=0;EPP=48.6112;EPPR=109.412;GTI=0;LEN=1;MEANALT=1.33333;MQM=60;MQMR=60;NS=3;NUMALT=2;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=853;QR=1962;RO=49;RPL=0;RPP=48.6112;RPPR=109.412;RPR=21;RUN=1;SAF=21;SAP=48.6112;SAR=0;SRF=49;SRP=109.412;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|1:41:29,0,12:29:1161:0,12:0,487:-31.8394,-40.5693,-136.209,0,-96.0436,-92.4312 0|1:8:4,2,2:4:157:2,2:80,82:-5.56899,-0.188103,-12.487,0,-6.31517,-12.3055 0|1:23:16,0,7:16:644:0,7:0,284:-19.0101,-23.8266,-76.9011,0,-53.4788,-51.3716 dDocent_Contig_8005 69 . G A 260.603 . AB=0.407407;ABP=5.02092;AC=2;AF=0.333333;AN=6;AO=11;CIGAR=1X;DP=30;DPB=30;DPRA=4.5;EPP=26.8965;EPPR=44.2683;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=411;QR=699;RO=19;RPL=11;RPP=26.8965;RPPR=44.2683;RPR=0;RUN=1;SAF=11;SAP=26.8965;SAR=0;SRF=19;SRP=44.2683;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:14:9,5:9:307:5:190:-13.2525,0,-23.74 0/1:13:7,6:7:275:6:221:-16.3305,0,-21.2055 0/0:3:3,0:3:117:0:0:0,-0.90309,-10.9104 dDocent_Contig_8006 55 . T C 84.0303 . AB=0.133333;ABP=73.0765;AC=1;AF=0.166667;AN=6;AO=8;CIGAR=1X;DP=79;DPB=79;DPRA=6.31579;EPP=20.3821;EPPR=157.185;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=307;QR=2855;RO=71;RPL=8;RPP=20.3821;RPPR=157.185;RPR=0;RUN=1;SAF=8;SAP=20.3821;SAR=0;SRF=71;SRP=157.185;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:60:52,8:52:2088:8:307:-9.92572,0,-170.032 0/0:3:3,0:3:123:0:0:0,-0.90309,-11.4648 0/0:16:16,0:16:644:0:0:0,-4.81648,-58.2947 dDocent_Contig_8007 191 . T C 881.178 . AB=0.518519;ABP=3.17115;AC=4;AF=0.666667;AN=6;AO=30;CIGAR=1X;DP=56;DPB=56;DPRA=0;EPP=68.1545;EPPR=59.4686;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=1187;QR=1040;RO=26;RPL=30;RPP=68.1545;RPPR=59.4686;RPR=0;RUN=1;SAF=0;SAP=68.1545;SAR=30;SRF=0;SRP=59.4686;SRR=26;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:46:21,25:21:844:25:986:-75.1788,0,-62.4262 1/1:2:0,2:0:0:2:79:-7.49724,-0.60206,0 0/1:8:5,3:5:196:3:122:-8.96425,0,-15.6066 dDocent_Contig_8008 17 . T A 209.62 . AB=0.55;ABP=3.44459;AC=2;AF=0.333333;AN=6;AO=11;CIGAR=1X;DP=29;DPB=29;DPRA=1.11111;EPP=4.78696;EPPR=42.0968;GTI=0;LEN=1;MEANALT=1;MQM=44.5455;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=0.272727;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=424;QR=712;RO=18;RPL=0;RPP=26.8965;RPPR=42.0968;RPR=11;RUN=1;SAF=7;SAP=4.78696;SAR=4;SRF=18;SRP=42.0968;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:10:6,4:6:244:4:143:-3.64808,0,-19.3285 0/1:10:3,7:3:109:7:281:-20.8335,0,-7.15269 0/0:9:9,0:9:359:0:0:0,-2.70927,-32.6726 dDocent_Contig_8010 19 . A G 189.772 . AB=0.264706;ABP=19.3602;AC=2;AF=0.333333;AN=6;AO=11;CIGAR=1X;DP=61;DPB=61;DPRA=0;EPP=26.8965;EPPR=111.584;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=436;QR=1981;RO=50;RPL=0;RPP=26.8965;RPPR=111.584;RPR=11;RUN=1;SAF=11;SAP=26.8965;SAR=0;SRF=50;SRP=111.584;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:32:24,8:24:965:8:315:-19.0824,0,-77.5168 0/1:2:1,1:1:35:1:40:-3.39362,0,-2.89657 0/0:27:25,2:25:981:2:81:0,-0.442076,-80.8982 dDocent_Contig_8012 10 . T C 913.275 . AB=0.357143;ABP=20.3821;AC=3;AF=0.5;AN=6;AO=35;CIGAR=1X;DP=98;DPB=98;DPRA=0;EPP=79.0118;EPPR=139.813;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=0.942857;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=1392;QR=2512;RO=63;RPL=0;RPP=79.0118;RPPR=139.813;RPR=35;RUN=1;SAF=35;SAP=79.0118;SAR=0;SRF=63;SRP=139.813;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:73:49,24:49:1951:24:962:-64.9062,0,-153.806 0/1:4:3,1:3:119:1:39:-2.69244,0,-9.89127 0/1:21:11,10:11:442:10:391:-29.2233,0,-33.8138 dDocent_Contig_8013 66 . C T 220.213 . AB=0.261905;ABP=23.691;AC=3;AF=0.5;AN=6;AO=11;CIGAR=1X;DP=42;DPB=42;DPRA=0;EPP=26.8965;EPPR=68.1545;GTI=0;LEN=1;MEANALT=1.33333;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=434;QR=1174;RO=30;RPL=11;RPP=26.8965;RPPR=68.1545;RPR=0;RUN=1;SAF=11;SAP=26.8965;SAR=0;SRF=30;SRP=68.1545;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:23:15,8:15:605:8:315:-21.7902,0,-47.8642 0/1:3:2,1:2:69:1:41:-3.19148,0,-5.64649 0/1:16:13,2:13:500:2:78:-2.51162,0,-40.4611 dDocent_Contig_8014 93 . C T 93.8755 . AB=0.333333;ABP=6.62942;AC=1;AF=0.166667;AN=6;AO=5;CIGAR=1X;DP=49;DPB=49;DPRA=0.882353;EPP=13.8677;EPPR=98.5551;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=171;QR=1482;RO=44;RPL=5;RPP=13.8677;RPPR=98.5551;RPR=0;RUN=1;SAF=5;SAP=13.8677;SAR=0;SRF=44;SRP=98.5551;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:31:31,0:31:1076:0:0:0,-9.33193,-97.151 0/0:3:3,0:3:105:0:0:0,-0.90309,-9.79616 0/1:15:10,5:10:301:5:171:-11.2113,0,-22.8665 dDocent_Contig_8016 7 . T A 56.8247 . AB=0.272727;ABP=7.94546;AC=1;AF=0.166667;AN=6;AO=8;CIGAR=1X;DP=125;DPB=125;DPRA=0;EPP=20.3821;EPPR=254.901;GTI=0;LEN=1;MEANALT=1.33333;MQM=60;MQMR=59.7069;NS=3;NUMALT=1;ODDS=0;PAIRED=0;PAIREDR=0.982759;PAO=0;PQA=0;PQR=0;PRO=0;QA=303;QR=4409;RO=116;RPL=0;RPP=20.3821;RPPR=254.901;RPR=8;RUN=1;SAF=8;SAP=20.3821;SAR=0;SRF=116;SRP=254.901;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:68:65,3:65:2466:3:111:0,-10.1164,-211.79 0/1:11:8,3:8:298:3:116:-7.50637,0,-23.6897 0/0:46:43,2:43:1645:2:76:0,-6.56491,-141.166 dDocent_Contig_8017 61 . T G 100.322 . AB=0.263158;ABP=12.2676;AC=2;AF=0.333333;AN=6;AO=5;CIGAR=1X;DP=25;DPB=25;DPRA=1.58333;EPP=13.8677;EPPR=46.4397;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=205;QR=800;RO=20;RPL=5;RPP=13.8677;RPPR=46.4397;RPR=0;RUN=1;SAF=5;SAP=13.8677;SAR=0;SRF=20;SRP=46.4397;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:15:13,2:13:524:2:82:-3.26423,0,-42.9918 0/1:4:1,3:1:40:3:123:-10.2607,0,-2.79156 0/0:6:6,0:6:236:0:0:0,-1.80618,-21.6097 dDocent_Contig_8018 17 . C T 105.26 . AB=0.294118;ABP=9.26925;AC=1;AF=0.166667;AN=6;AO=7;CIGAR=1X1M2X;DP=53;DPB=53;DPRA=12.75;EPP=18.2106;EPPR=102.898;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=266;QR=1817;RO=46;RPL=0;RPP=18.2106;RPPR=102.898;RPR=7;RUN=1;SAF=7;SAP=18.2106;SAR=0;SRF=46;SRP=102.898;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|0:34:32,2:32:1257:2:76:0,-3.02021,-106.193 0|0:2:2,0:2:80:0:0:0,-0.60206,-7.59179 0|1:17:12,5:12:480:5:190:-12.3496,0,-38.4348 dDocent_Contig_8020 154 . G A 227.657 . AB=0.277778;ABP=18.4519;AC=2;AF=0.333333;AN=6;AO=10;CIGAR=1X;DP=57;DPB=57;DPRA=0.857143;EPP=24.725;EPPR=105.07;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=404;QR=1853;RO=47;RPL=0;RPP=24.725;RPPR=105.07;RPR=10;RUN=1;SAF=0;SAP=24.725;SAR=10;SRF=0;SRP=105.07;SRR=47;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:27:20,7:20:788:7:282:-17.6254,0,-63.1022 0/1:9:6,3:6:241:3:122:-8.66322,0,-19.357 0/0:21:21,0:21:824:0:0:0,-6.32163,-74.4733 dDocent_Contig_8023 73 . A C 53.938 . AB=0.173913;ABP=24.253;AC=1;AF=0.166667;AN=6;AO=4;CIGAR=1X;DP=46;DPB=46;DPRA=2;EPP=11.6962;EPPR=94.2121;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=1.73472e-18;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=153;QR=1563;RO=42;RPL=4;RPP=11.6962;RPPR=94.2121;RPR=0;RUN=1;SAF=4;SAP=11.6962;SAR=0;SRF=42;SRP=94.2121;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:17:17,0:17:668:0:0:0,-5.11751,-60.4525 0/0:6:6,0:6:215:0:0:0,-1.80618,-19.6929 0/1:23:19,4:19:680:4:153:-7.21768,0,-54.5943 dDocent_Contig_8025 28 . C A 3856.76 . AB=0.601504;ABP=14.9126;AC=4;AF=0.666667;AN=6;AO=120;CIGAR=1X;DP=174;DPB=174;DPRA=0;EPP=263.587;EPPR=120.27;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=4807;QR=2135;RO=54;RPL=0;RPP=263.587;RPPR=120.27;RPR=120;RUN=1;SAF=120;SAP=263.587;SAR=0;SRF=54;SRP=120.27;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:103:40,63:40:1587:63:2519:-195.841,0,-112.05 0/1:30:13,17:13:507:17:679:-52.4105,0,-36.9411 1/1:41:1,40:1:41:40:1609:-140.947,-8.24766,0 dDocent_Contig_8026 11 . A T 87.0725 . AB=0.178571;ABP=28.1373;AC=1;AF=0.25;AN=4;AO=6;CIGAR=1X;DP=46;DPB=46;DPRA=0;EPP=16.0391;EPPR=89.8692;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=2;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=243;QR=1591;RO=40;RPL=0;RPP=16.0391;RPPR=89.8692;RPR=6;RUN=1;SAF=6;SAP=16.0391;SAR=0;SRF=40;SRP=89.8692;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:28:23,5:23:910:5:205:-10.4062,0,-73.7727 ./.:.:.:.:.:.:.:. 0/0:18:17,1:17:681:1:38:0,-1.62127,-57.8164 dDocent_Contig_8027 135 . T C 425.855 . AB=0.133333;ABP=20.5268;AC=0;AF=0;AN=6;AO=2;CIGAR=2X1M1X;DP=90;DPB=90;DPRA=0;EPP=7.35324;EPPR=139.813;GTI=0;LEN=1;MEANALT=2;MQM=60;MQMR=60;NS=3;NUMALT=2;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=71;QR=2266;RO=63;RPL=0;RPP=7.35324;RPPR=139.813;RPR=2;RUN=1;SAF=0;SAP=7.35324;SAR=2;SRF=0;SRP=139.813;SRR=63;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|0:57:43,0,13:43:1551:0,13:0,447:-23.5547,-36.499,-163.095,0,-126.797,-122.884 0|0:15:8,2,5:8:278:2,5:71,164:-10.8214,-7.43693,-29.4487,0,-16.8094,-21.0907 0|0:18:12,0,6:12:437:0,6:0,209:-13.7322,-17.3446,-53.0517,0,-36.0606,-34.2544 dDocent_Contig_8028 95 . A C 146.454 . AB=0.75;ABP=7.35324;AC=1;AF=0.166667;AN=6;AO=6;CIGAR=1X;DP=38;DPB=38;DPRA=0.533333;EPP=16.0391;EPPR=72.4974;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=8.67362e-19;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=206;QR=1100;RO=32;RPL=6;RPP=16.0391;RPPR=72.4974;RPR=0;RUN=1;SAF=6;SAP=16.0391;SAR=0;SRF=32;SRP=72.4974;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:19:19,0:19:646:0:0:0,-5.71957,-58.4598 0/0:11:11,0:11:384:0:0:0,-3.31133,-34.8956 0/1:8:2,6:2:70:6:206:-16.4684,0,-4.23916 dDocent_Contig_8029 39 . G C 349.642 . AB=0.464286;ABP=3.32051;AC=2;AF=0.333333;AN=6;AO=13;CIGAR=1X;DP=32;DPB=32;DPRA=3.5;EPP=31.2394;EPPR=44.2683;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=513;QR=766;RO=19;RPL=0;RPP=31.2394;RPPR=44.2683;RPR=13;RUN=1;SAF=13;SAP=31.2394;SAR=0;SRF=19;SRP=44.2683;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:17:7,10:7:283:10:392:-30.5181,0,-20.7261 0/0:4:4,0:4:163:0:0:0,-1.20412,-15.0584 0/1:11:8,3:8:320:3:121:-7.96887,0,-25.8554 dDocent_Contig_8033 28 . A G 41.8309 . AB=0.147059;ABP=39.7976;AC=2;AF=0.333333;AN=6;AO=8;CIGAR=1X;DP=86;DPB=86;DPRA=0;EPP=20.3821;EPPR=172.385;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=3.46945e-18;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=313;QR=3076;RO=78;RPL=0;RPP=20.3821;RPPR=172.385;RPR=8;RUN=1;SAF=8;SAP=20.3821;SAR=0;SRF=78;SRP=172.385;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:52:49,3:49:1917:3:122:0,-4.28107,-161.361 0/1:12:10,2:10:407:2:69:-2.93953,0,-33.3782 0/1:22:19,3:19:752:3:122:-4.74983,0,-61.3822 dDocent_Contig_8034 44 . A G 37.3687 . AB=0.15;ABP=24.2907;AC=1;AF=0.166667;AN=6;AO=3;CIGAR=1X;DP=31;DPB=31;DPRA=3.63636;EPP=9.52472;EPPR=63.8115;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=121;QR=1111;RO=28;RPL=0;RPP=9.52472;RPPR=63.8115;RPR=3;RUN=1;SAF=3;SAP=9.52472;SAR=0;SRF=28;SRP=63.8115;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:20:17,3:17:664:3:121:-5.2596,0,-54.0673 0/0:5:5,0:5:204:0:0:0,-1.50515,-18.744 0/0:6:6,0:6:243:0:0:0,-1.80618,-22.2482 dDocent_Contig_8035 28 . C G 136.748 . AB=0.296296;ABP=12.7417;AC=0;AF=0;AN=6;AO=8;CIGAR=2X;DP=80;DPB=80;DPRA=0;EPP=20.3821;EPPR=133.299;GTI=0;LEN=1;MEANALT=2;MQM=16;MQMR=60;NS=3;NUMALT=2;ODDS=0;PAIRED=0;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=323;QR=2350;RO=60;RPL=0;RPP=20.3821;RPPR=133.299;RPR=8;RUN=1;SAF=0;SAP=20.3821;SAR=8;SRF=60;SRP=133.299;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|0:27:15,8,4:15:591:8,4:323,157:-8.36185,-3.92959,-50.143,0,-39.7513,-47.5664 0|0:10:9,0,1:9:335:0,1:0,36:-0.587975,-3.29724,-30.7212,0,-27.785,-27.484 0|0:43:36,0,6:36:1424:0,6:0,240:-8.83024,-19.6673,-136.855,0,-117.186,-115.379 dDocent_Contig_8036 15 . G T 44.3047 . AB=0.230769;ABP=11.1951;AC=1;AF=0.166667;AN=6;AO=3;CIGAR=1M2I4M1X3M;DP=52;DPB=52.6667;DPRA=0.666667;EPP=9.52472;EPPR=107.241;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=0.708333;PAO=0;PQA=0;PQR=0;PRO=0;QA=109;QR=1863;RO=48;RPL=0;RPP=9.52472;RPPR=107.241;RPR=3;RUN=1;SAF=3;SAP=9.52472;SAR=0;SRF=48;SRP=107.241;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|0:31:31,0:31:1199:0:0:0,-9.33193,-108.201 0|1:13:10,3:10:389:3:109:-6.25435,0,-31.454 0|0:8:7,0:7:275:0:0:0,-2.10721,-24.7117 dDocent_Contig_8037 8 . G A 33.7825 . AB=0.285714;ABP=5.80219;AC=1;AF=0.166667;AN=6;AO=2;CIGAR=1X;DP=25;DPB=25;DPRA=0.777778;EPP=7.35324;EPPR=52.9542;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=0;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=77;QR=882;RO=23;RPL=0;RPP=7.35324;RPPR=52.9542;RPR=2;RUN=1;SAF=2;SAP=7.35324;SAR=0;SRF=23;SRP=52.9542;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:13:13,0:13:500:0:0:0,-3.91339,-45.347 0/0:5:5,0:5:193:0:0:0,-1.50515,-17.7414 0/1:7:5,2:5:189:2:77:-5.20193,0,-15.2674 dDocent_Contig_8038 42 . T A 1185.45 . AB=0.11215;ABP=142.817;AC=0;AF=0;AN=6;AO=12;CIGAR=1X3M1X2M;DP=107;DPB=107;DPRA=0;EPP=29.068;EPPR=105.07;GTI=0;LEN=1;MEANALT=2.66667;MQM=60;MQMR=60;NS=3;NUMALT=3;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=475;QR=1860;RO=47;RPL=0;RPP=29.068;RPPR=105.07;RPR=12;RUN=1;SAF=12;SAP=29.068;SAR=0;SRF=47;SRP=105.07;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|0:53:20,7,2,24:20:798:7,2,24:281,81,968:-73.7706,-56.6373,-120.251,-73.1119,-115.678,-138.231,0,-42.5654,-59.0407,-58.4955 0|0:13:5,2,0,6:5:199:2,0,6:81,0,242:-18.4415,-13.2671,-29.0488,-19.9467,-29.6509,-36.3307,0,-9.70011,-16.3813,-14.5751 0|0:41:22,3,4,12:22:863:3,4,12:113,139,468:-31.8558,-29.2199,-99.295,-27.1903,-88.9062,-96.9598,0,-61.737,-59.7045,-67.3827 dDocent_Contig_8040 38 . T G 588.302 . AB=0;ABP=0;AC=2;AF=0.333333;AN=6;AO=16;CIGAR=1X;DP=43;DPB=43;DPRA=1.18519;EPP=3.55317;EPPR=61.6401;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=1.69407e-21;PAIRED=0.125;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=648;QR=1039;RO=27;RPL=14;RPP=22.5536;RPPR=61.6401;RPR=2;RUN=1;SAF=9;SAP=3.55317;SAR=7;SRF=27;SRP=61.6401;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:18:18,0:18:690:0:0:0,-5.41854,-62.4119 1/1:16:0,16:0:0:16:648:-58.6541,-4.81648,0 0/0:9:9,0:9:349:0:0:0,-2.70927,-31.7639 dDocent_Contig_8041 64 . T C 635.186 . AB=0.201258;ABP=126.265;AC=3;AF=0.5;AN=6;AO=32;CIGAR=2M1X10M;DP=159;DPB=155.692;DPRA=0;EPP=72.4974;EPPR=265.758;GTI=0;LEN=1;MEANALT=2;MQM=60;MQMR=60;NS=3;NUMALT=2;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=1266;QR=4626;RO=121;RPL=32;RPP=72.4974;RPPR=265.758;RPR=0;RUN=1;SAF=32;SAP=72.4974;SAR=0;SRF=121;SRP=265.758;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|1:97:71,0,24:71:2751:0,24:0,953:-57.0798,-78.453,-304.448,0,-225.999,-218.775 0|1:9:8,0,1:8:299:0,1:0,40:-1.28641,-3.69465,-28.1524,0,-24.8544,-24.5534 0|1:53:42,4,7:42:1576:4,7:70,273:-9.93449,-17.5601,-145.446,0,-124.207,-127.178 dDocent_Contig_8042 8 . G A 5282.44 . AB=0.69378;ABP=71.1779;AC=5;AF=0.833333;AN=6;AO=145;CIGAR=1X4M;DP=209;DPB=210.4;DPRA=0;EPP=317.874;EPPR=44.2683;GTI=0;LEN=1;MEANALT=2.33333;MQM=60;MQMR=60;NS=3;NUMALT=2;ODDS=0;PAIRED=1;PAIREDR=1;PAO=3.5;PQA=118.5;PQR=118.5;PRO=3.5;QA=5539;QR=723;RO=19;RPL=0;RPP=317.874;RPPR=44.2683;RPR=145;RUN=1;SAF=145;SAP=317.874;SAR=0;SRF=19;SRP=44.2683;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 1|1:159:7,33,118:7:268:33,118:1234,4506:-446.611,-347.673,-359.733,-79.0273,0,-65.5002 1|1:16:2,4,10:2:78:4,10:152,387:-37.1863,-25.3283,-30.5345,-6.014,0,-9.40888 0|1:34:10,7,17:10:377:7,17:252,646:-49.9691,-32.4296,-61.2135,0,-10.349,-25.7772 dDocent_Contig_8043 11 . T C 247.307 . AB=0.164179;ABP=134.271;AC=2;AF=0.333333;AN=6;AO=22;CIGAR=1M1D3M1X;DP=156;DPB=152;DPRA=3.04545;EPP=50.7827;EPPR=287.473;GTI=0;LEN=1;MEANALT=2;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=0.961832;PAO=0;PQA=0;PQR=0;PRO=0;QA=748;QR=4987;RO=131;RPL=0;RPP=50.7827;RPPR=287.473;RPR=22;RUN=1;SAF=22;SAP=50.7827;SAR=0;SRF=131;SRP=287.473;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|1:121:101,17:101:3854:17:586:-17.2686,0,-311.199 0|1:13:8,5:8:295:5:162:-10.985,0,-22.9876 0|0:22:22,0:22:838:0:0:0,-6.62266,-75.7424 dDocent_Contig_8044 14 . T A 46.837 . AB=0.133333;ABP=55.5599;AC=1;AF=0.166667;AN=6;AO=8;CIGAR=1X;DP=107;DPB=107;DPRA=4.85;EPP=20.3821;EPPR=217.986;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=3.46945e-18;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=298;QR=3940;RO=99;RPL=0;RPP=20.3821;RPPR=217.986;RPR=8;RUN=1;SAF=8;SAP=20.3821;SAR=0;SRF=99;SRP=217.986;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:52:50,2:50:1992:2:79:0,-8.15593,-171.969 0/0:10:10,0:10:397:0:0:0,-3.0103,-36.0882 0/1:45:39,6:39:1551:6:219:-6.50759,0,-126.286 dDocent_Contig_8045 8 . G A 525.9 . AB=0.198675;ABP=122.096;AC=2;AF=0.333333;AN=6;AO=34;CIGAR=1X;DP=205;DPB=205;DPRA=0;EPP=76.8404;EPPR=374.332;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=0.97076;PAO=0;PQA=0;PQR=0;PRO=0;QA=1276;QR=6555;RO=171;RPL=0;RPP=76.8404;RPPR=374.332;RPR=34;RUN=1;SAF=34;SAP=76.8404;SAR=0;SRF=171;SRP=374.332;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:93:72,21:72:2753:21:774:-41.9827,0,-219.953 0/0:54:50,4:50:1909:4:155:0,-1.93018,-157.73 0/1:58:49,9:49:1893:9:347:-14.1301,0,-153.155 dDocent_Contig_8046 179 . C T 72.6957 . AB=0.192308;ABP=24.391;AC=2;AF=0.333333;AN=6;AO=5;CIGAR=1X;DP=38;DPB=38;DPRA=1.08333;EPP=13.8677;EPPR=74.6689;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=198;QR=1300;RO=33;RPL=5;RPP=13.8677;RPPR=74.6689;RPR=0;RUN=1;SAF=0;SAP=13.8677;SAR=5;SRF=0;SRP=74.6689;SRR=33;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:22:18,4:18:693:4:157:-7.88376,0,-56.0681 0/1:4:3,1:3:122:1:41:-2.89045,0,-10.1684 0/0:12:12,0:12:485:0:0:0,-3.61236,-44.0009 dDocent_Contig_8047 11 . C A 887.925 . AB=0.226519;ABP=120.594;AC=3;AF=0.5;AN=6;AO=41;CIGAR=1X;DP=181;DPB=181;DPRA=0;EPP=75.5163;EPPR=307.016;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=45.6071;NS=3;NUMALT=1;ODDS=0;PAIRED=0.902439;PAIREDR=0.528571;PAO=0;PQA=0;PQR=0;PRO=0;QA=1642;QR=5534;RO=140;RPL=0;RPP=92.0407;RPPR=307.016;RPR=41;RUN=1;SAF=39;SAP=75.5163;SAR=2;SRF=140;SRP=307.016;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:111:86,25:86:3389:25:1010:-57.7775,0,-230.223 0/1:24:20,4:20:776:4:160:-7.55908,0,-54.3128 0/1:46:34,12:34:1369:12:472:-28.9788,0,-90.9061 dDocent_Contig_8049 7 . T C 251.365 . AB=0.3;ABP=16.9077;AC=3;AF=0.5;AN=6;AO=12;CIGAR=1X;DP=40;DPB=40;DPRA=0;EPP=29.068;EPPR=63.8115;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=462;QR=1058;RO=28;RPL=0;RPP=29.068;RPPR=63.8115;RPR=12;RUN=1;SAF=12;SAP=29.068;SAR=0;SRF=28;SRP=63.8115;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:18:12,6:12:454:6:234:-16.0126,0,-35.789 0/1:12:8,4:8:301:4:150:-10.253,0,-23.8344 0/1:10:8,2:8:303:2:78:-4.39317,0,-24.6178 dDocent_Contig_8050 117 . G T 60.4538 . AB=0.25;ABP=11.6962;AC=1;AF=0.166667;AN=6;AO=5;CIGAR=3M1X5M;DP=36;DPB=36.4444;DPRA=8.5;EPP=13.8677;EPPR=65.983;GTI=0;LEN=1;MEANALT=1.5;MQM=60;MQMR=58.1034;NS=3;NUMALT=2;ODDS=0;PAIRED=1;PAIREDR=0.965517;PAO=0;PQA=0;PQR=0;PRO=0;QA=141;QR=876;RO=29;RPL=0;RPP=13.8677;RPPR=65.983;RPR=5;RUN=1;SAF=0;SAP=13.8677;SAR=5;SRF=0;SRP=65.983;SRR=29;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|0:18:17,0,1:17:527:0,1:0,7:0,-5.11751,-47.6443,-4.71854,-47.3286,-47.0276 0|0:2:2,0,0:2:38:0,0:0,0:0,-0.60206,-3.60992,-0.60206,-3.60992,-3.60992 0|1:16:10,2,4:10:311:2,4:59,134:-7.86849,-6.1855,-28.2706,0,-18.0065,-21.5105 dDocent_Contig_8051 8 . G A 109.822 . AB=0.175;ABP=39.7082;AC=1;AF=0.166667;AN=6;AO=13;CIGAR=1X;DP=123;DPB=123;DPRA=0;EPP=31.2394;EPPR=241.872;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=57.5;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=495;QR=4148;RO=110;RPL=0;RPP=31.2394;RPPR=241.872;RPR=13;RUN=1;SAF=13;SAP=31.2394;SAR=0;SRF=110;SRP=241.872;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:42:39,3:39:1492:3:117:0,-1.73288,-122.226 0/0:41:38,3:38:1432:3:106:0,-2.45402,-119.272 0/1:40:33,7:33:1224:7:272:-12.806,0,-89.553 dDocent_Contig_8052 107 . N A 68.3781 . AB=0;ABP=0;AC=2;AF=1;AN=2;AO=2;CIGAR=1X;DP=2;DPB=2;DPRA=0;EPP=7.35324;EPPR=0;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=0;NS=1;NUMALT=1;ODDS=5.99146;PAIRED=1;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=72;QR=0;RO=0;RPL=0;RPP=7.35324;RPPR=0;RPR=2;RUN=1;SAF=0;SAP=7.35324;SAR=2;SRF=0;SRP=0;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 1/1:2:0,2:0:0:2:72:-6.83672,-0.60206,0 ./.:.:.:.:.:.:.:. ./.:.:.:.:.:.:.:. dDocent_Contig_8055 7 . T C 797.489 . AB=0.416667;ABP=7.35324;AC=2;AF=0.333333;AN=6;AO=30;CIGAR=1X;DP=76;DPB=76;DPRA=9;EPP=68.1545;EPPR=102.898;GTI=0;LEN=1;MEANALT=1;MQM=58.6;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=1159;QR=1768;RO=46;RPL=0;RPP=68.1545;RPPR=102.898;RPR=30;RUN=1;SAF=30;SAP=68.1545;SAR=0;SRF=46;SRP=102.898;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:36:19,17:19:731:17:656:-48.5303,0,-55.2841 0/0:4:4,0:4:154:0:0:0,-1.20412,-14.2335 0/1:36:23,13:23:883:13:503:-34.7413,0,-68.9511 dDocent_Contig_8056 28 . T C 57.5355 . AB=0.126984;ABP=79.1497;AC=2;AF=0.333333;AN=6;AO=8;CIGAR=1X;DP=64;DPB=64;DPRA=31.5;EPP=20.3821;EPPR=124.613;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=305;QR=2236;RO=56;RPL=0;RPP=20.3821;RPPR=124.613;RPR=8;RUN=1;SAF=8;SAP=20.3821;SAR=0;SRF=56;SRP=124.613;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:50:45,5:45:1788:5:190:-2.41431,0,-146.083 0/0:1:1,0:1:41:0:0:0,-0.30103,-4.09457 0/1:13:10,3:10:407:3:115:-6.80899,0,-33.077 dDocent_Contig_8057 52 . T C 69.3161 . AB=0.333333;ABP=5.18177;AC=1;AF=0.166667;AN=6;AO=3;CIGAR=1X;DP=48;DPB=48;DPRA=0.461538;EPP=9.52472;EPPR=100.727;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=8.67362e-19;PAIRED=1;PAIREDR=0.955556;PAO=0;PQA=0;PQR=0;PRO=0;QA=123;QR=1795;RO=45;RPL=3;RPP=9.52472;RPPR=100.727;RPR=0;RUN=1;SAF=3;SAP=9.52472;SAR=0;SRF=45;SRP=100.727;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:25:25,0:25:995:0:0:0,-7.52575,-89.8491 0/0:14:14,0:14:565:0:0:0,-4.21442,-51.1929 0/1:9:6,3:6:235:3:123:-8.75552,0,-18.8104 dDocent_Contig_8059 17 . G A 51.4899 . AB=0.2;ABP=14.7363;AC=1;AF=0.166667;AN=6;AO=3;CIGAR=1X;DP=43;DPB=43;DPRA=1.07143;EPP=9.52472;EPPR=89.8692;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=120;QR=1587;RO=40;RPL=0;RPP=9.52472;RPPR=89.8692;RPR=3;RUN=1;SAF=3;SAP=9.52472;SAR=0;SRF=40;SRP=89.8692;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:15:12,3:12:483:3:120:-6.67186,0,-39.3061 0/0:8:8,0:8:325:0:0:0,-2.40824,-29.6196 0/0:20:20,0:20:779:0:0:0,-6.0206,-70.4238 dDocent_Contig_8060 7 . T C 378.606 . AB=0.0555556;ABP=64.7766;AC=0;AF=0;AN=6;AO=2;CIGAR=1X1M2X2M1X1M3X;DP=75;DPB=75;DPRA=0;EPP=7.35324;EPPR=68.1545;GTI=0;LEN=1;MEANALT=8;MQM=27;MQMR=60;NS=3;NUMALT=9;ODDS=1.38778e-17;PAIRED=0;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=73;QR=1169;RO=30;RPL=0;RPP=7.35324;RPPR=68.1545;RPR=2;RUN=1;SAF=2;SAP=7.35324;SAR=0;SRF=30;SRP=68.1545;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|0:19:7,0,0,2,0,0,0,2,0,5:7:277:0,0,2,0,0,0,2,0,5:0,0,75,0,0,0,77,0,183:-12.8868,-14.994,-37.8238,-14.994,-37.8238,-37.8238,-9.12582,-31.9635,-31.9635,-31.3614,-14.994,-37.8238,-37.8238,-31.9635,-37.8238,-14.994,-37.8238,-37.8238,-31.9635,-37.8238,-37.8238,-14.994,-37.8238,-37.8238,-31.9635,-37.8238,-37.8238,-37.8238,-8.65648,-31.4962,-31.4962,-25.6349,-31.4962,-31.4962,-31.4962,-30.8942,-14.994,-37.8238,-37.8238,-31.9635,-37.8238,-37.8238,-37.8238,-31.4962,-37.8238,0,-22.8614,-22.8614,-16.9987,-22.8614,-22.8614,-22.8614,-16.5302,-22.8614,-21.3563 0|0:20:13,0,3,0,2,0,0,0,1,1:13:506:0,3,0,2,0,0,0,1,1:0,117,0,76,0,0,0,36,39:-5.7094,-9.62279,-51.2123,0,-41.5943,-40.6912,-9.62279,-51.2123,-41.5943,-51.2123,-3.39103,-44.9801,-35.3622,-44.9801,-44.3781,-9.62279,-51.2123,-41.5943,-51.2123,-44.9801,-51.2123,-9.62279,-51.2123,-41.5943,-51.2123,-44.9801,-51.2123,-51.2123,-9.62279,-51.2123,-41.5943,-51.2123,-44.9801,-51.2123,-51.2123,-51.2123,-6.68916,-48.2762,-38.6585,-48.2762,-42.0443,-48.2762,-48.2762,-48.2762,-47.9752,-6.41573,-48.0062,-38.3882,-48.0062,-41.7741,-48.0062,-48.0062,-48.0062,-45.0703,-47.7052 0|0:36:10,2,0,2,0,3,3,0,5,9:10:386:2,0,2,0,3,3,0,5,9:73,0,77,0,63,109,0,190,339:-24.7871,-23.633,-54.7398,-27.7974,-55.3419,-59.5075,-21.8174,-49.3635,-53.5287,-52.9267,-27.7974,-55.3419,-59.5075,-53.5287,-59.5075,-23.8596,-51.4003,-55.5644,-49.5866,-55.5644,-54.6613,-18.8972,-46.4442,-50.6093,-44.6304,-50.6093,-46.6677,-49.7062,-27.7974,-55.3419,-59.5075,-53.5287,-59.5075,-55.5644,-50.6093,-59.5075,-12.2058,-39.7559,-43.9209,-37.9417,-43.9209,-39.9801,-35.0221,-43.9209,-42.4157,0,-27.5569,-31.7212,-25.7416,-31.7212,-27.7831,-22.8217,-31.7212,-16.1311,-29.0119 dDocent_Contig_8061 106 . N T 1289.96 . AB=0;ABP=0;AC=2;AF=1;AN=2;AO=42;CIGAR=2X;DP=42;DPB=42;DPRA=0;EPP=94.2121;EPPR=0;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=0;NS=1;NUMALT=1;ODDS=33.7174;PAIRED=1;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=1430;QR=0;RO=0;RPL=0;RPP=94.2121;RPPR=0;RPR=42;RUN=1;SAF=0;SAP=94.2121;SAR=42;SRF=0;SRP=0;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 1|1:42:0,42:0:0:42:1430:-128.996,-12.6433,0 .:.:.:.:.:.:.:. .:.:.:.:.:.:.:. dDocent_Contig_8064 55 . G T 96.8093 . AB=0.134831;ABP=106.094;AC=3;AF=0.5;AN=6;AO=12;CIGAR=1X;DP=89;DPB=89;DPRA=0;EPP=29.068;EPPR=170.214;GTI=0;LEN=1;MEANALT=1;MQM=56;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=0.75;PAIREDR=0.792208;PAO=0;PQA=0;PQR=0;PRO=0;QA=440;QR=3082;RO=77;RPL=0;RPP=29.068;RPPR=170.214;RPR=12;RUN=1;SAF=12;SAP=29.068;SAR=0;SRF=77;SRP=170.214;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:53:48,5:48:1913:5:181:-0.526015,0,-156.425 0/1:18:14,4:14:568:4:148:-8.26343,0,-46.0438 0/1:18:15,3:15:601:3:111:-4.93538,0,-49.0095 dDocent_Contig_8065 138 . C T 1332.52 . AB=0.662162;ABP=19.9126;AC=3;AF=0.5;AN=6;AO=49;CIGAR=1X;DP=74;DPB=74;DPRA=0;EPP=109.412;EPPR=57.2971;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=42.68;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=0.6;PAO=0;PQA=0;PQR=0;PRO=0;QA=1778;QR=884;RO=25;RPL=0;RPP=109.412;RPPR=57.2971;RPR=49;RUN=1;SAF=0;SAP=109.412;SAR=49;SRF=0;SRP=57.2971;SRR=25;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:39:14,25:14:496:25:895:-69.1258,0,-18.3092 0/1:3:1,2:1:37:2:74:-6.12279,0,-2.79474 0/1:32:10,22:10:351:22:809:-63.5034,0,-20.5608 dDocent_Contig_8066 8 . G T 170.077 . AB=0.179104;ABP=62.9365;AC=3;AF=0.5;AN=6;AO=12;CIGAR=1X;DP=67;DPB=67;DPRA=0;EPP=29.068;EPPR=122.441;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=3.46945e-18;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=462;QR=2103;RO=55;RPL=0;RPP=29.068;RPPR=122.441;RPR=12;RUN=1;SAF=12;SAP=29.068;SAR=0;SRF=55;SRP=122.441;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:29:25,4:25:969:4:156:-5.68742,0,-78.7932 0/1:12:9,3:9:339:3:114:-7.01986,0,-27.2507 0/1:26:21,5:21:795:5:192:-9.82323,0,-64.0435 dDocent_Contig_8068 50 . C T 61.1184 . AB=0.16129;ABP=33.9012;AC=2;AF=0.333333;AN=6;AO=5;CIGAR=1X;DP=40;DPB=40;DPRA=1.72222;EPP=13.8677;EPPR=79.0118;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=202;QR=1382;RO=35;RPL=5;RPP=13.8677;RPPR=79.0118;RPR=0;RUN=1;SAF=5;SAP=13.8677;SAR=0;SRF=35;SRP=79.0118;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:23:20,3:20:794:3:121:-4.35651,0,-64.8555 0/1:8:6,2:6:234:2:81:-5.27749,0,-19.0199 0/0:9:9,0:9:354:0:0:0,-2.70927,-32.2206 dDocent_Contig_8069 36 . G A 74.5674 . AB=0.210526;ABP=16.8392;AC=1;AF=0.25;AN=4;AO=4;CIGAR=1X;DP=28;DPB=28;DPRA=2.11111;EPP=11.6962;EPPR=55.1256;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=2;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=161;QR=903;RO=24;RPL=0;RPP=11.6962;RPPR=55.1256;RPR=4;RUN=1;SAF=4;SAP=11.6962;SAR=0;SRF=24;SRP=55.1256;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:19:15,4:15:548:4:161:-9.1557,0,-43.9091 ./.:.:.:.:.:.:.:. 0/0:9:9,0:9:355:0:0:0,-2.70927,-32.3108 dDocent_Contig_8071 32 . G T 705.514 . AB=0.375;ABP=12.7819;AC=3;AF=0.5;AN=6;AO=27;CIGAR=1X;DP=72;DPB=72;DPRA=0;EPP=61.6401;EPPR=100.727;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=0.888889;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=1074;QR=1774;RO=45;RPL=0;RPP=61.6401;RPPR=100.727;RPR=27;RUN=1;SAF=27;SAP=61.6401;SAR=0;SRF=45;SRP=100.727;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:35:22,13:22:888:13:529:-37.4202,0,-69.6926 0/1:9:7,2:7:282:2:81:-4.97646,0,-23.0433 0/1:28:16,12:16:604:12:464:-33.6775,0,-46.2505 dDocent_Contig_8072 41 . G A 90.3906 . AB=0.175;ABP=39.7082;AC=3;AF=0.5;AN=6;AO=7;CIGAR=1X;DP=40;DPB=40;DPRA=0;EPP=18.2106;EPPR=74.6689;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=282;QR=1282;RO=33;RPL=0;RPP=18.2106;RPPR=74.6689;RPR=7;RUN=1;SAF=7;SAP=18.2106;SAR=0;SRF=33;SRP=74.6689;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:5:4,1:4:160:1:40:-2.49053,0,-13.2783 0/1:25:22,3:22:839:3:120:-3.66194,0,-68.2908 0/1:10:7,3:7:283:3:122:-8.36219,0,-22.8331 dDocent_Contig_8073 27 . T C 310.527 . AB=0.219178;ABP=53.0137;AC=3;AF=0.5;AN=6;AO=16;CIGAR=1X;DP=73;DPB=73;DPRA=0;EPP=37.7539;EPPR=126.784;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=638;QR=2214;RO=57;RPL=0;RPP=37.7539;RPPR=126.784;RPR=16;RUN=1;SAF=16;SAP=37.7539;SAR=0;SRF=57;SRP=126.784;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:27:23,4:23:893:4:163:-6.93062,0,-72.5492 0/1:16:8,8:8:276:8:317:-24.0756,0,-20.3481 0/1:30:26,4:26:1045:4:158:-5.56937,0,-85.3076 dDocent_Contig_8074 41 . C A 57.5287 . AB=0.192308;ABP=24.391;AC=2;AF=0.333333;AN=6;AO=5;CIGAR=1X;DP=32;DPB=32;DPRA=2.16667;EPP=13.8677;EPPR=61.6401;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=1.73472e-18;PAIRED=1;PAIREDR=0.962963;PAO=0;PQA=0;PQR=0;PRO=0;QA=182;QR=1034;RO=27;RPL=0;RPP=13.8677;RPPR=61.6401;RPR=5;RUN=1;SAF=5;SAP=13.8677;SAR=0;SRF=27;SRP=61.6401;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:6:6,0:6:224:0:0:0,-1.80618,-20.5175 0/1:6:4,2:4:153:2:75:-5.31416,0,-12.3341 0/1:20:17,3:17:657:3:107:-3.95991,0,-53.4418 dDocent_Contig_8075 8 . G A 185.543 . AB=0.145299;ABP=130.867;AC=3;AF=0.5;AN=6;AO=17;CIGAR=1X;DP=117;DPB=117;DPRA=0;EPP=39.9253;EPPR=220.158;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=0.647059;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=646;QR=3824;RO=100;RPL=0;RPP=39.9253;RPPR=220.158;RPR=17;RUN=1;SAF=17;SAP=39.9253;SAR=0;SRF=100;SRP=220.158;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:84:72,12:72:2751:12:455:-16.0102,0,-222.486 0/1:5:4,1:4:156:1:39:-2.39141,0,-12.9121 0/1:28:24,4:24:917:4:152:-5.62036,0,-74.4149 dDocent_Contig_8077 69 . A G 132.659 . AB=0.333333;ABP=8.07707;AC=2;AF=0.5;AN=4;AO=7;CIGAR=1X;DP=21;DPB=21;DPRA=0;EPP=18.2106;EPPR=33.4109;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=2;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=251;QR=544;RO=14;RPL=7;RPP=18.2106;RPPR=33.4109;RPR=0;RUN=1;SAF=7;SAP=18.2106;SAR=0;SRF=14;SRP=33.4109;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:10:6,4:6:242:4:146:-10.4828,0,-19.1472 ./.:.:.:.:.:.:.:. 0/1:11:8,3:8:302:3:105:-6.48205,0,-24.2268 dDocent_Contig_8079 131 . A G 47.143 . AB=0.428571;ABP=3.32051;AC=1;AF=0.166667;AN=6;AO=3;CIGAR=1X;DP=49;DPB=49;DPRA=0.333333;EPP=9.52472;EPPR=102.898;GTI=0;LEN=1;MEANALT=1;MQM=33;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=0;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=105;QR=1570;RO=46;RPL=0;RPP=9.52472;RPPR=102.898;RPR=3;RUN=1;SAF=0;SAP=9.52472;SAR=3;SRF=0;SRP=102.898;SRR=46;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:35:35,0:35:1193:0:0:0,-10.536,-107.659 0/0:7:7,0:7:229:0:0:0,-2.10721,-20.9284 0/1:7:4,3:4:148:3:105:-6.53819,0,-11.5748 dDocent_Contig_8080 8 . G A 44.0781 . AB=0.666667;ABP=3.73412;AC=1;AF=0.166667;AN=6;AO=2;CIGAR=1X;DP=28;DPB=28;DPRA=0.24;EPP=7.35324;EPPR=59.4686;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=75;QR=994;RO=26;RPL=0;RPP=7.35324;RPPR=59.4686;RPR=2;RUN=1;SAF=2;SAP=7.35324;SAR=0;SRF=26;SRP=59.4686;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:14:14,0:14:528:0:0:0,-4.21442,-47.8596 0/1:3:1,2:1:39:2:75:-6.21725,0,-2.99347 0/0:11:11,0:11:427:0:0:0,-3.31133,-38.785 dDocent_Contig_8081 146 . C A 110.762 . AB=0.35;ABP=6.91895;AC=1;AF=0.166667;AN=6;AO=7;CIGAR=1X;DP=56;DPB=56;DPRA=1.11111;EPP=18.2106;EPPR=109.412;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=207;QR=1636;RO=49;RPL=0;RPP=18.2106;RPPR=109.412;RPR=7;RUN=1;SAF=0;SAP=18.2106;SAR=7;SRF=0;SRP=109.412;SRR=49;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:30:30,0:30:1014:0:0:0,-9.0309,-91.5675 0/0:6:6,0:6:175:0:0:0,-1.80618,-16.0383 0/1:20:13,7:13:447:7:207:-12.9001,0,-34.5389 dDocent_Contig_8082 29 . C T 79.5613 . AB=0;ABP=0;AC=2;AF=0.333333;AN=6;AO=2;CIGAR=1X;DP=39;DPB=39;DPRA=0.108108;EPP=7.35324;EPPR=83.3548;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=1.69407e-21;PAIRED=1;PAIREDR=0.783784;PAO=0;PQA=0;PQR=0;PRO=0;QA=82;QR=1489;RO=37;RPL=0;RPP=7.35324;RPPR=83.3548;RPR=2;RUN=1;SAF=2;SAP=7.35324;SAR=0;SRF=37;SRP=83.3548;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:22:22,0:22:892:0:0:0,-6.62266,-80.5868 1/1:2:0,2:0:0:2:82:-7.77968,-0.60206,0 0/0:15:15,0:15:597:0:0:0,-4.51545,-54.0662 dDocent_Contig_8083 203 . G T 179.845 . AB=0.636364;ABP=4.78696;AC=1;AF=0.166667;AN=6;AO=7;CIGAR=1X;DP=24;DPB=24;DPRA=1.69231;EPP=18.2106;EPPR=39.9253;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=8.67362e-19;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=253;QR=618;RO=17;RPL=7;RPP=18.2106;RPPR=39.9253;RPR=0;RUN=1;SAF=0;SAP=18.2106;SAR=7;SRF=0;SRP=39.9253;SRR=17;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:5:5,0:5:178:0:0:0,-1.50515,-16.3681 0/0:8:8,0:8:292:0:0:0,-2.40824,-26.6306 0/1:11:4,7:4:148:7:253:-19.8084,0,-10.3706 dDocent_Contig_8084 8 . G A 317.806 . AB=0.166667;ABP=113.032;AC=3;AF=0.5;AN=6;AO=19;CIGAR=1X2M1X;DP=114;DPB=114;DPRA=0;EPP=44.2683;EPPR=183.243;GTI=0;LEN=1;MEANALT=1.66667;MQM=59.8421;MQMR=60;NS=3;NUMALT=2;ODDS=0;PAIRED=0.947368;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=745;QR=3195;RO=83;RPL=0;RPP=44.2683;RPPR=183.243;RPR=19;RUN=1;SAF=19;SAP=44.2683;SAR=0;SRF=83;SRP=183.243;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|1:68:48,11,9:48:1857:11,9:430,369:-20.8925,0,-149.204,-4.878,-122.057,-154.701 0|1:8:7,1,0:7:269:1,0:38,0:-1.38903,0,-22.1649,-3.49624,-22.466,-25.5819 0|1:38:28,7,3:28:1069:7,3:277,114:-14.3768,0,-85.5973,-13.462,-78.3563,-100.251 dDocent_Contig_8086 15 . A G 126.147 . AB=0.357143;ABP=5.49198;AC=1;AF=0.166667;AN=6;AO=9;CIGAR=1X;DP=99;DPB=99;DPRA=1.2069;EPP=22.5536;EPPR=198.443;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=0.966667;PAO=0;PQA=0;PQR=0;PRO=0;QA=364;QR=3584;RO=90;RPL=0;RPP=22.5536;RPPR=198.443;RPR=9;RUN=1;SAF=9;SAP=22.5536;SAR=0;SRF=90;SRP=198.443;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:56:52,4:52:2062:4:161:0,-1.98278,-170.892 0/1:14:9,5:9:357:5:203:-14.4386,0,-28.2778 0/0:29:29,0:29:1165:0:0:0,-8.72987,-105.131 dDocent_Contig_8087 9 . A G 380.799 . AB=0.466667;ABP=3.29983;AC=2;AF=0.333333;AN=6;AO=14;CIGAR=1X;DP=40;DPB=40;DPRA=1.5;EPP=33.4109;EPPR=59.4686;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=0.5;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=541;QR=995;RO=26;RPL=0;RPP=33.4109;RPPR=59.4686;RPR=14;RUN=1;SAF=14;SAP=33.4109;SAR=0;SRF=26;SRP=59.4686;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:11:10,1:10:378:1:38:-0.485939,0,-31.0608 0/0:10:10,0:10:388:0:0:0,-3.0103,-35.2779 0/1:19:6,13:6:229:13:503:-39.8994,0,-15.2564 dDocent_Contig_8088 139 . T A 30.3096 . AB=0.285714;ABP=5.80219;AC=1;AF=0.25;AN=4;AO=2;CIGAR=1X;DP=14;DPB=14;DPRA=1;EPP=7.35324;EPPR=29.068;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=2;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=72;QR=431;RO=12;RPL=0;RPP=7.35324;RPPR=29.068;RPR=2;RUN=1;SAF=0;SAP=7.35324;SAR=2;SRF=0;SRP=29.068;SRR=12;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:7:5,2:5:179:2:72:-4.72951,0,-14.3532 ./.:.:.:.:.:.:.:. 0/0:7:7,0:7:252:0:0:0,-2.10721,-23.029 dDocent_Contig_8089 122 . G T 372.501 . AB=0.516129;ABP=3.08035;AC=3;AF=0.5;AN=6;AO=16;CIGAR=1X;DP=31;DPB=31;DPRA=0;EPP=37.7539;EPPR=35.5824;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=566;QR=507;RO=15;RPL=0;RPP=37.7539;RPPR=35.5824;RPR=16;RUN=1;SAF=0;SAP=37.7539;SAR=16;SRF=0;SRP=35.5824;SRR=15;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:13:9,4:9:307:4:139:-8.93911,0,-24.0479 0/1:5:1,4:1:35:4:141:-11.5319,0,-1.99348 0/1:13:5,8:5:165:8:286:-22.1721,0,-11.2614 dDocent_Contig_8090 7 . T C 255.506 . AB=0.181818;ABP=80.3937;AC=3;AF=0.5;AN=6;AO=16;CIGAR=1X2M1X3M1X;DP=88;DPB=88;DPRA=0;EPP=37.7539;EPPR=159.356;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=626;QR=2772;RO=72;RPL=0;RPP=37.7539;RPPR=159.356;RPR=16;RUN=1;SAF=16;SAP=37.7539;SAR=0;SRF=72;SRP=159.356;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|1:59:51,8:51:1986:8:312:-10.6838,0,-161.206 0|1:4:1,3:1:33:3:117:-9.70579,0,-2.09501 0|1:25:20,5:20:753:5:197:-10.5808,0,-60.567 dDocent_Contig_8091 49 . G A 206.982 . AB=0.157895;ABP=118.898;AC=2;AF=0.333333;AN=6;AO=18;CIGAR=1X;DP=138;DPB=138;DPRA=2.375;EPP=42.0968;EPPR=238.181;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=0.991667;PAO=0;PQA=0;PQR=0;PRO=0;QA=643;QR=4497;RO=120;RPL=0;RPP=42.0968;RPPR=238.181;RPR=18;RUN=1;SAF=18;SAP=42.0968;SAR=0;SRF=120;SRP=263.587;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:66:56,10:56:2099:10:370:-13.7791,0,-169.276 0/0:24:24,0:24:892:0:0:0,-7.22472,-80.5947 0/1:48:40,8:40:1506:8:273:-10.442,0,-121.355 dDocent_Contig_8092 18 . C T 1401.11 . AB=0.475248;ABP=3.54779;AC=2;AF=0.333333;AN=6;AO=48;CIGAR=1X;DP=102;DPB=102;DPRA=50.5;EPP=107.241;EPPR=120.27;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=1927;QR=2177;RO=54;RPL=0;RPP=107.241;RPPR=120.27;RPR=48;RUN=1;SAF=48;SAP=107.241;SAR=0;SRF=54;SRP=120.27;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:67:25,42:25:1006:42:1682:-131.438,0,-70.6645 0/0:1:1,0:1:41:0:0:0,-0.30103,-4.09457 0/1:34:28,6:28:1130:6:245:-12.1945,0,-91.7455 dDocent_Contig_8094 209 . N G 112.807 . AB=0;ABP=0;AC=2;AF=1;AN=2;AO=3;CIGAR=1X;DP=3;DPB=3;DPRA=0;EPP=9.52472;EPPR=0;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=0;NS=1;NUMALT=1;ODDS=6.68461;PAIRED=1;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=121;QR=0;RO=0;RPL=3;RPP=9.52472;RPPR=0;RPR=0;RUN=1;SAF=0;SAP=9.52472;SAR=3;SRF=0;SRP=0;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 1/1:3:0,3:0:0:3:121:-11.2802,-0.90309,0 ./.:.:.:.:.:.:.:. ./.:.:.:.:.:.:.:. dDocent_Contig_8095 25 . A T 210.477 . AB=0.212766;ABP=36.6912;AC=1;AF=0.166667;AN=6;AO=10;CIGAR=1X;DP=82;DPB=82;DPRA=2.68571;EPP=24.725;EPPR=159.356;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=404;QR=2866;RO=72;RPL=0;RPP=24.725;RPPR=159.356;RPR=10;RUN=1;SAF=10;SAP=24.725;SAR=0;SRF=72;SRP=159.356;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:47:37,10:37:1448:10:404:-22.5705,0,-116.419 0/0:16:16,0:16:648:0:0:0,-4.81648,-58.6526 0/0:19:19,0:19:770:0:0:0,-5.71957,-69.6209 dDocent_Contig_8096 86 . A G 179.28 . AB=0.213115;ABP=46.6177;AC=2;AF=0.333333;AN=6;AO=13;CIGAR=1X;DP=89;DPB=89;DPRA=1.08929;EPP=31.2394;EPPR=168.042;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=435;QR=2634;RO=76;RPL=13;RPP=31.2394;RPPR=168.042;RPR=0;RUN=1;SAF=13;SAP=31.2394;SAR=0;SRF=76;SRP=168.042;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:47:37,10:37:1284:10:331:-15.9622,0,-101.715 0/1:14:11,3:11:387:3:104:-5.48867,0,-30.953 0/0:28:28,0:28:963:0:0:0,-8.42884,-86.9826 dDocent_Contig_8097 11 . C T 2431.7 . AB=0.144144;ABP=125.102;AC=2;AF=0.333333;AN=6;AO=16;CIGAR=2X2M1I5M;DP=111;DPB=112.778;DPRA=0;EPP=37.7539;EPPR=44.2683;GTI=0;LEN=1;MEANALT=2.66667;MQM=60;MQMR=60;NS=3;NUMALT=2;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=638;QR=747;RO=19;RPL=0;RPP=37.7539;RPPR=44.2683;RPR=16;RUN=1;SAF=16;SAP=37.7539;SAR=0;SRF=19;SRP=44.2683;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|0:60:9,3,47:9:352:3,47:119,1875:-151.732,-144.646,-172.683,0,-19.1592,-14.8106 1|0:17:3,5,8:3:118:5,8:203,321:-32.6287,-16.779,-24.9846,-7.06393,0,-14.3707 1|0:34:7,8,19:7:277:8,19:316,767:-64.3316,-40.4381,-60.8239,-3.2064,0,-20.2834 dDocent_Contig_8098 7 . T G 4770.23 . AB=0.877451;ABP=255.455;AC=4;AF=0.666667;AN=6;AO=187;CIGAR=1X;DP=213;DPB=213;DPRA=0;EPP=409.076;EPPR=57.2971;GTI=0;LEN=1;MEANALT=1.33333;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=6024;QR=838;RO=25;RPL=0;RPP=409.076;RPPR=57.2971;RPR=187;RUN=1;SAF=187;SAP=409.076;SAR=0;SRF=25;SRP=57.2971;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:140:14,126:14:504:126:4103:-327.251,0,-3.54051 1/1:9:1,8:1:11:8:286:-24.9816,-1.60928,0 0/1:64:10,53:10:323:53:1635:-128.309,0,-10.279 dDocent_Contig_8099 54 . C T 615.09 . AB=0.122807;ABP=73.4498;AC=1;AF=0.166667;AN=6;AO=7;CIGAR=1M1X1M;DP=57;DPB=51;DPRA=0;EPP=18.2106;EPPR=68.1545;GTI=0;LEN=1;MEANALT=2;MQM=60;MQMR=60;NS=3;NUMALT=2;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=274;QR=1171;RO=30;RPL=7;RPP=18.2106;RPPR=68.1545;RPR=0;RUN=1;SAF=7;SAP=18.2106;SAR=0;SRF=30;SRP=68.1545;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|0:37:20,16,1:20:775:16,1:614,39:-44.361,0,-58.8461,-47.1754,-60.4566,-110.541 0|0:9:4,3,1:4:159:3,1:113,40:-8.0592,0,-12.2059,-5.96178,-9.81159,-18.7664 0|1:11:6,0,5:6:237:0,5:0,195:-14.6116,-16.4178,-35.9232,0,-19.8973,-18.3922 dDocent_Contig_8100 17 . A G 7677.55 . AB=0.131313;ABP=236.784;AC=1;AF=0.166667;AN=6;AO=31;CIGAR=2X3M1X;DP=334;DPB=334;DPRA=0;EPP=70.3259;EPPR=85.5263;GTI=0;LEN=1;MEANALT=5.33333;MQM=60;MQMR=60;NS=3;NUMALT=3;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=1238;QR=1483;RO=38;RPL=0;RPP=70.3259;RPPR=85.5263;RPR=31;RUN=1;SAF=31;SAP=70.3259;SAR=0;SRF=38;SRP=85.5263;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|0:176:29,9,19,114:29:1127:9,19,114:359,761,4478:-359.548,-338.711,-428.606,-305.582,-368.62,-392.467,0,-63.0352,-29.9041,-58.2847 1|0:22:6,0,7,9:6:233:0,7,9:0,277,357:-31.2396,-33.0458,-52.1878,-10.2489,-29.3898,-27.2826,-3.66045,-22.8013,0,-20.092 0|0:136:3,8,5,111:3:123:8,5,111:312,200,4355:-380.49,-355.749,-363.494,-364.918,-349.426,-373.565,-23.2605,-7.77409,-16.9385,0 dDocent_Contig_8101 11 . C A 1262.22 . AB=0.428571;ABP=6.1124;AC=4;AF=0.666666;AN=6;AO=30;CIGAR=2X3M;DP=70;DPB=70;DPRA=0;EPP=68.1545;EPPR=35.5824;GTI=0;LEN=1;MEANALT=2;MQM=55.5;MQMR=60;NS=3;NUMALT=2;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=1171;QR=586;RO=15;RPL=0;RPP=68.1545;RPPR=35.5824;RPR=30;RUN=1;SAF=30;SAP=68.1545;SAR=0;SRF=15;SRP=35.5824;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|1:28:8,14,6:8:320:14,6:541,231:-41.4224,0,-22.1548,-24.909,-7.45516,-49.4697 1|1:18:1,6,11:1:36:6,11:225,442:-51.3324,-33.4299,-34.5578,-15.2875,0,-14.912 0|1:24:6,5,13:6:230:5,13:194,498:-38.9896,-25.0787,-42.4476,0,-3.15712,-14.9605 dDocent_Contig_8102 23 . C G 64.6843 . AB=0.3;ABP=6.48466;AC=1;AF=0.166667;AN=6;AO=3;CIGAR=1X;DP=29;DPB=29;DPRA=1.05263;EPP=9.52472;EPPR=57.2971;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=118;QR=956;RO=25;RPL=0;RPP=9.52472;RPPR=57.2971;RPR=3;RUN=1;SAF=3;SAP=9.52472;SAR=0;SRF=25;SRP=57.2971;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:10:7,3:7:233:3:118:-7.99128,0,-18.2767 0/0:12:12,0:12:482:0:0:0,-3.61236,-43.7312 0/0:7:6,0:6:241:0:0:0,-1.80618,-21.6756 dDocent_Contig_8103 13 . G T 386.49 . AB=0.185841;ABP=99.881;AC=3;AF=0.5;AN=6;AO=21;CIGAR=1X;DP=113;DPB=113;DPRA=0;EPP=48.6112;EPPR=202.786;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=847;QR=3613;RO=92;RPL=0;RPP=48.6112;RPPR=202.786;RPR=21;RUN=1;SAF=21;SAP=48.6112;SAR=0;SRF=92;SRP=202.786;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:74:61,13:61:2401:13:524:-25.2307,0,-193.968 0/1:21:19,2:19:728:2:79:-1.17561,0,-59.5051 0/1:18:12,6:12:484:6:244:-16.9201,0,-38.4923 dDocent_Contig_8104 21 . T C 4421.58 . AB=0.708571;ABP=69.1347;AC=4;AF=0.666667;AN=6;AO=139;CIGAR=1X;DP=191;DPB=191;DPRA=0;EPP=304.845;EPPR=115.927;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=1.38778e-17;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=5575;QR=2092;RO=52;RPL=0;RPP=304.845;RPPR=115.927;RPR=139;RUN=1;SAF=139;SAP=304.845;SAR=0;SRF=52;SRP=115.927;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:137:44,93:44:1766:93:3727:-294.188,0,-117.912 1/1:16:1,15:1:40:15:612:-51.4209,-0.820801,0 0/1:38:7,31:7:286:31:1236:-100.073,0,-14.6757 dDocent_Contig_8105 17 . C T 728.112 . AB=0.415385;ABP=7.05258;AC=2;AF=0.5;AN=4;AO=27;CIGAR=1X;DP=65;DPB=65;DPRA=0;EPP=61.6401;EPPR=85.5263;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=2;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=1060;QR=1493;RO=38;RPL=0;RPP=61.6401;RPPR=85.5263;RPR=27;RUN=1;SAF=27;SAP=61.6401;SAR=0;SRF=38;SRP=85.5263;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:43:30,13:30:1200:13:505:-32.8398,0,-95.3271 ./.:.:.:.:.:.:.:. 0/1:22:8,14:8:293:14:555:-43.6704,0,-20.0879 dDocent_Contig_8106 13 . C T 49.7033 . AB=0.666667;ABP=3.73412;AC=1;AF=0.166667;AN=6;AO=2;CIGAR=1X;DP=29;DPB=29;DPRA=0.230769;EPP=3.0103;EPPR=61.6401;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=0;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=81;QR=1101;RO=27;RPL=0;RPP=7.35324;RPPR=61.6401;RPR=2;RUN=1;SAF=1;SAP=3.0103;SAR=1;SRF=27;SRP=61.6401;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:21:21,0:21:857:0:0:0,-6.32163,-77.4389 0/1:3:1,2:1:40:2:81:-6.78264,0,-3.09259 0/0:5:5,0:5:204:0:0:0,-1.50515,-18.744 dDocent_Contig_8108 39 . C T 920.39 . AB=0.361111;ABP=21.1059;AC=3;AF=0.5;AN=6;AO=39;CIGAR=1X;DP=108;DPB=108;DPRA=0;EPP=87.6977;EPPR=150.67;GTI=0;LEN=1;MEANALT=1.33333;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=1432;QR=2316;RO=68;RPL=0;RPP=87.6977;RPPR=150.67;RPR=39;RUN=1;SAF=39;SAP=87.6977;SAR=0;SRF=68;SRP=150.67;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:72:52,20:52:1737:20:724:-43.7915,0,-134.903 0/1:15:10,5:10:368:5:198:-13.6814,0,-28.9455 0/1:21:6,14:6:211:14:510:-40.089,0,-13.1642 dDocent_Contig_8109 43 . G A 218.121 . AB=0.30303;ABP=14.1309;AC=2;AF=0.333333;AN=6;AO=10;CIGAR=1X;DP=109;DPB=109;DPRA=0.217105;EPP=24.725;EPPR=217.986;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=3.46945e-18;PAIRED=1;PAIREDR=0.989899;PAO=0;PQA=0;PQR=0;PRO=0;QA=383;QR=3943;RO=99;RPL=0;RPP=24.725;RPPR=217.986;RPR=10;RUN=1;SAF=10;SAP=24.725;SAR=0;SRF=99;SRP=217.986;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:76:76,0:76:3034:0:0:0,-22.8783,-273.143 0/1:5:4,1:4:163:1:38:-2.29212,0,-13.5533 0/1:28:19,9:19:746:9:345:-22.9746,0,-59.0313 dDocent_Contig_8110 184 . C A 52.3585 . AB=0.131579;ABP=47.8112;AC=1;AF=0.166667;AN=6;AO=7;CIGAR=1X;DP=64;DPB=64;DPRA=31.5;EPP=18.2106;EPPR=126.784;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=277;QR=2264;RO=57;RPL=7;RPP=18.2106;RPPR=126.784;RPR=0;RUN=1;SAF=0;SAP=18.2106;SAR=7;SRF=0;SRP=126.784;SRR=57;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:38:33,5:33:1317:5:198:-6.75663,0,-107.354 0/0:1:1,0:1:39:0:0:0,-0.30103,-3.89656 0/0:25:23,2:23:908:2:79:0,-0.0285055,-74.5211 dDocent_Contig_8111 12 . C T 171.752 . AB=0.230769;ABP=27.5646;AC=3;AF=0.5;AN=6;AO=9;CIGAR=1X;DP=39;DPB=39;DPRA=0;EPP=22.5536;EPPR=68.1545;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=368;QR=1211;RO=30;RPL=0;RPP=22.5536;RPPR=68.1545;RPR=9;RUN=1;SAF=9;SAP=22.5536;SAR=0;SRF=30;SRP=68.1545;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:23:17,6:17:693:6:245:-15.5058,0,-55.7737 0/1:7:6,1:6:232:1:41:-1.98736,0,-19.1382 0/1:9:7,2:7:286:2:82:-5.07041,0,-23.4055 dDocent_Contig_8112 174 . A T 330.564 . AB=0.521739;ABP=3.10471;AC=2;AF=0.333333;AN=6;AO=12;CIGAR=1X;DP=34;DPB=34;DPRA=1.04545;EPP=29.068;EPPR=50.7827;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=475;QR=874;RO=22;RPL=12;RPP=29.068;RPPR=50.7827;RPR=0;RUN=1;SAF=0;SAP=29.068;SAR=12;SRF=0;SRP=50.7827;SRR=22;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:19:9,10:9:360:10:394:-30.0976,0,-27.0444 0/1:4:2,2:2:78:2:81:-6.48161,0,-6.19918 0/0:11:11,0:11:436:0:0:0,-3.31133,-39.5951 dDocent_Contig_8114 8 . G C 87.4498 . AB=0.12987;ABP=94.6352;AC=3;AF=0.5;AN=6;AO=10;CIGAR=1X;DP=77;DPB=77;DPRA=0;EPP=24.725;EPPR=148.499;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=0.7;PAIREDR=0.955224;PAO=0;PQA=0;PQR=0;PRO=0;QA=390;QR=2562;RO=67;RPL=0;RPP=24.725;RPPR=148.499;RPR=10;RUN=1;SAF=10;SAP=24.725;SAR=0;SRF=67;SRP=148.499;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:38:32,6:32:1219:6:234:-9.99196,0,-98.564 0/1:10:9,1:9:343:1:39:-0.886264,0,-28.2168 0/1:29:26,3:26:1000:3:117:-2.18051,0,-81.5812 dDocent_Contig_8115 163 . A G 164.277 . AB=0.466667;ABP=3.15506;AC=2;AF=0.333333;AN=6;AO=7;CIGAR=1X;DP=23;DPB=23;DPRA=0.9375;EPP=18.2106;EPPR=37.7539;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=258;QR=575;RO=16;RPL=7;RPP=18.2106;RPPR=37.7539;RPR=0;RUN=1;SAF=0;SAP=18.2106;SAR=7;SRF=0;SRP=37.7539;SRR=16;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:7:1,6:1:41:6:217:-17.766,0,-1.98736 0/1:8:7,1:7:254:1:41:-1.68633,0,-20.798 0/0:8:8,0:8:280:0:0:0,-2.40824,-25.5268 dDocent_Contig_8116 15 . T C 2752.77 . AB=0.551515;ABP=6.81367;AC=3;AF=0.5;AN=6;AO=91;CIGAR=1X;DP=165;DPB=165;DPRA=0;EPP=200.614;EPPR=163.699;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=1.38778e-17;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=3663;QR=2949;RO=74;RPL=0;RPP=200.614;RPPR=163.699;RPR=91;RUN=1;SAF=91;SAP=200.614;SAR=0;SRF=74;SRP=163.699;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:106:52,54:52:2068:54:2180:-164.452,0,-154.397 0/1:8:3,5:3:122:5:197:-15.6967,0,-8.96425 0/1:51:19,32:19:759:32:1286:-100.652,0,-53.2797 dDocent_Contig_8117 116 . C A 798.469 . AB=0.359223;ABP=20.7405;AC=3;AF=0.5;AN=6;AO=37;CIGAR=1X;DP=103;DPB=103;DPRA=0;EPP=83.3548;EPPR=146.327;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=1282;QR=2251;RO=66;RPL=0;RPP=83.3548;RPPR=146.327;RPR=37;RUN=1;SAF=0;SAP=83.3548;SAR=37;SRF=0;SRP=146.327;SRR=66;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:79:50,29:50:1695:29:1005:-66.9814,0,-129.054 0/1:10:6,4:6:208:4:137:-9.65791,0,-16.0493 0/1:14:10,4:10:348:4:140:-8.73051,0,-27.4416 dDocent_Contig_8118 41 . C T 113.594 . AB=0.189189;ABP=34.0565;AC=1;AF=0.166667;AN=6;AO=7;CIGAR=1X;DP=51;DPB=51;DPRA=5.28571;EPP=18.2106;EPPR=98.5551;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=263;QR=1761;RO=44;RPL=0;RPP=18.2106;RPPR=98.5551;RPR=7;RUN=1;SAF=7;SAP=18.2106;SAR=0;SRF=44;SRP=98.5551;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:37:30,7:30:1195:7:263:-12.8822,0,-96.6873 0/0:6:6,0:6:242:0:0:0,-1.80618,-22.1573 0/0:8:8,0:8:324:0:0:0,-2.40824,-29.5292 dDocent_Contig_8121 13 . G A 131.646 . AB=0.242424;ABP=22.0271;AC=2;AF=0.333333;AN=6;AO=8;CIGAR=1X;DP=56;DPB=56;DPRA=0.717391;EPP=4.09604;EPPR=107.241;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=0.125;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=288;QR=1919;RO=48;RPL=0;RPP=20.3821;RPPR=107.241;RPR=8;RUN=1;SAF=3;SAP=4.09604;SAR=5;SRF=48;SRP=107.241;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:24:20,4:20:806:4:150:-6.64006,0,-65.6312 0/1:9:5,4:5:192:4:138:-10.0474,0,-14.9383 0/0:23:23,0:23:921:0:0:0,-6.92369,-83.1932 dDocent_Contig_8122 25 . A G 53.4209 . AB=0.153846;ABP=30.0702;AC=1;AF=0.166667;AN=6;AO=4;CIGAR=1X;DP=75;DPB=75;DPRA=1.06122;EPP=11.6962;EPPR=157.185;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=159;QR=2835;RO=71;RPL=0;RPP=11.6962;RPPR=157.185;RPR=4;RUN=1;SAF=4;SAP=11.6962;SAR=0;SRF=71;SRP=157.185;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:26:22,4:22:881:4:159:-6.86497,0,-71.7694 0/0:36:36,0:36:1435:0:0:0,-10.8371,-129.403 0/0:13:13,0:13:519:0:0:0,-3.91339,-47.0565 dDocent_Contig_8123 8 . C A 331.051 . AB=0.1875;ABP=98.0122;AC=3;AF=0.5;AN=6;AO=21;CIGAR=1X;DP=112;DPB=112;DPRA=0;EPP=48.6112;EPPR=200.614;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=792;QR=3463;RO=91;RPL=0;RPP=48.6112;RPPR=200.614;RPR=21;RUN=1;SAF=21;SAP=48.6112;SAR=0;SRF=91;SRP=200.614;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:70:59,11:59:2264:11:423:-17.3517,0,-182.906 0/1:15:11,4:11:387:4:142:-8.61218,0,-30.6447 0/1:27:21,6:21:812:6:227:-12.6641,0,-65.277 dDocent_Contig_8124 8 . C T 205.759 . AB=0.229167;ABP=33.5919;AC=3;AF=0.5;AN=6;AO=11;CIGAR=1X;DP=48;DPB=48;DPRA=0;EPP=26.8965;EPPR=83.3548;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=0.818182;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=419;QR=1416;RO=37;RPL=0;RPP=26.8965;RPPR=83.3548;RPR=11;RUN=1;SAF=11;SAP=26.8965;SAR=0;SRF=37;SRP=83.3548;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:30:24,6:24:911:6:229:-11.9444,0,-73.2728 0/1:6:2,4:2:78:4:151:-12.1516,0,-5.59729 0/1:12:11,1:11:427:1:39:-0.284205,0,-35.1726 dDocent_Contig_8125 147 . C G 50.3994 . AB=0.5;ABP=3.0103;AC=3;AF=0.5;AN=6;AO=8;CIGAR=1X1M1X;DP=30;DPB=30;DPRA=0.4375;EPP=20.3821;EPPR=50.7827;GTI=0;LEN=1;MEANALT=1;MQM=13.75;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=0;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=308;QR=829;RO=22;RPL=0;RPP=20.3821;RPPR=50.7827;RPR=8;RUN=1;SAF=0;SAP=20.3821;SAR=8;SRF=0;SRP=50.7827;SRR=22;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|0:16:16,0:16:607:0:0:0,-4.81648,-54.9542 0|1:12:6,6:6:222:6:228:-3.71198,0,-16.7198 1|1:2:0,2:0:0:2:80:-2.84748,-0.60206,0 dDocent_Contig_8126 8 . C T 152.1 . AB=0.166667;ABP=60.9162;AC=2;AF=0.333333;AN=6;AO=12;CIGAR=1X;DP=158;DPB=158;DPRA=0;EPP=29.068;EPPR=320.045;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=0.90411;PAO=0;PQA=0;PQR=0;PRO=0;QA=465;QR=5601;RO=146;RPL=0;RPP=29.068;RPPR=320.045;RPR=12;RUN=1;SAF=12;SAP=29.068;SAR=0;SRF=146;SRP=320.045;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:27:20,7:20:755:7:272:-16.7194,0,-60.149 0/0:98:96,2:96:3692:2:76:0,-22.2861,-325.175 0/1:33:30,3:30:1154:3:117:-0.976391,0,-94.2232 dDocent_Contig_8127 68 . G T 209.68 . AB=0.221053;ABP=67.2173;AC=2;AF=0.333333;AN=6;AO=25;CIGAR=1X;DP=131;DPB=131;DPRA=0;EPP=57.2971;EPPR=233.186;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=6.93889e-18;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=674;QR=2677;RO=106;RPL=25;RPP=57.2971;RPPR=233.186;RPR=0;RUN=1;SAF=25;SAP=57.2971;SAR=0;SRF=106;SRP=233.186;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:70:54,16:54:1374:16:461:-20.699,0,-102.831 0/1:25:20,5:20:510:5:123:-3.78954,0,-38.6252 0/0:36:32,4:32:793:4:90:0,-2.51242,-63.2863 dDocent_Contig_8128 120 . C A 209.08 . AB=0.473684;ABP=3.12459;AC=2;AF=0.333333;AN=6;AO=10;CIGAR=1X;DP=46;DPB=46;DPRA=0;EPP=24.725;EPPR=81.1833;GTI=0;LEN=1;MEANALT=1;MQM=59.1;MQMR=58.8889;NS=3;NUMALT=1;ODDS=0;PAIRED=0;PAIREDR=0.777778;PAO=0;PQA=0;PQR=0;PRO=0;QA=349;QR=1094;RO=36;RPL=0;RPP=24.725;RPPR=81.1833;RPR=10;RUN=1;SAF=0;SAP=24.725;SAR=10;SRF=0;SRP=81.1833;SRR=36;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:27:26,1:26:802:1:34:0,-4.7289,-69.0372 0/1:2:1,1:1:15:1:35:-2.89622,0,-0.897927 0/1:17:9,8:9:277:8:280:-20.4199,0,-20.1122 dDocent_Contig_8130 20 . T C 325.212 . AB=0.48;ABP=3.09716;AC=1;AF=0.166667;AN=6;AO=13;CIGAR=1X2M1X;DP=49;DPB=49;DPRA=1.72727;EPP=31.2394;EPPR=81.1833;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=494;QR=1420;RO=36;RPL=0;RPP=31.2394;RPPR=81.1833;RPR=13;RUN=1;SAF=13;SAP=31.2394;SAR=0;SRF=36;SRP=81.1833;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|1:25:13,12:13:517:12:458:-34.0434,0,-39.3507 0|0:11:11,0:11:426:0:0:0,-3.31133,-38.689 0|0:13:12,1:12:477:1:36:0,-0.315115,-39.6829 dDocent_Contig_8131 12 . C T 1425.86 . AB=0.280788;ABP=87.7405;AC=3;AF=0.5;AN=6;AO=57;CIGAR=1X;DP=203;DPB=203;DPRA=0;EPP=126.784;EPPR=320.045;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=58.6233;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=0.924658;PAO=0;PQA=0;PQR=0;PRO=0;QA=2314;QR=5855;RO=146;RPL=0;RPP=126.784;RPPR=320.045;RPR=57;RUN=1;SAF=57;SAP=126.784;SAR=0;SRF=146;SRP=320.045;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:81:53,28:53:2126:28:1131:-77.6861,0,-167.119 0/1:48:36,12:36:1434:12:491:-30.0915,0,-108.651 0/1:74:57,17:57:2295:17:692:-40.3316,0,-181.81 dDocent_Contig_8132 69 . A G 136.688 . AB=0.210526;ABP=30.668;AC=1;AF=0.166667;AN=6;AO=8;CIGAR=1X;DP=53;DPB=53;DPRA=5.06667;EPP=20.3821;EPPR=100.727;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=292;QR=1646;RO=45;RPL=8;RPP=20.3821;RPPR=100.727;RPR=0;RUN=1;SAF=8;SAP=20.3821;SAR=0;SRF=45;SRP=100.727;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:38:30,8:30:1097:8:292:-15.1915,0,-87.6016 0/0:3:3,0:3:112:0:0:0,-0.90309,-10.4459 0/0:12:12,0:12:437:0:0:0,-3.61236,-39.6729 dDocent_Contig_8133 107 . N T 212.168 . AB=0;ABP=0;AC=2;AF=0.5;AN=4;AO=7;CIGAR=1X;DP=8;DPB=8;DPRA=7;EPP=18.2106;EPPR=0;GTI=0;LEN=1;MEANALT=1;MQM=44.4286;MQMR=0;NS=2;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=240;QR=0;RO=0;RPL=0;RPP=18.2106;RPPR=0;RPR=7;RUN=1;SAF=0;SAP=18.2106;SAR=7;SRF=0;SRP=0;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 1/1:7:0,7:0:0:7:240:-20.7382,-2.10721,0 ./.:.:.:.:.:.:.:. 0/0:1:0,0:0:0:0:0:0,0,0 dDocent_Contig_8134 40 . G A 38.3778 . AB=0.133333;ABP=38.0434;AC=2;AF=0.333333;AN=6;AO=4;CIGAR=1X;DP=53;DPB=53;DPRA=0.652174;EPP=11.6962;EPPR=109.412;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=163;QR=1966;RO=49;RPL=0;RPP=11.6962;RPPR=109.412;RPR=4;RUN=1;SAF=4;SAP=11.6962;SAR=0;SRF=49;SRP=109.412;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:23:23,0:23:927:0:0:0,-6.92369,-83.733 0/1:11:10,1:10:401:1:41:-0.783237,0,-33.1383 0/1:19:16,3:16:638:3:122:-5.65292,0,-52.034 dDocent_Contig_8135 107 . N C 224.909 . AB=0.571429;ABP=3.32051;AC=6;AF=1;AN=6;AO=16;CIGAR=1X8M;DP=19;DPB=19;DPRA=0;EPP=37.7539;EPPR=0;GTI=0;LEN=1;MEANALT=1.33333;MQM=16.6875;MQMR=0;NS=3;NUMALT=2;ODDS=0;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=267;QR=0;RO=0;RPL=0;RPP=37.7539;RPPR=0;RPR=16;RUN=1;SAF=0;SAP=37.7539;SAR=16;SRF=0;SRP=0;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 1|1:11:0,0,11:0:0:0,11:0,116:-8.01236,-8.01236,-8.01236,-3.31133,-3.31133,0 1|1:7:0,3,4:0:0:3,4:105,121:-13.2898,-8.87533,-7.97224,-4.64447,0,-3.44035 1|1:1:0,0,1:0:0:0,1:0,30:-2.69919,-2.69919,-2.69919,-0.30103,-0.30103,0 dDocent_Contig_8136 15 . A G 60.9959 . AB=0.151515;ABP=37.8197;AC=1;AF=0.166667;AN=6;AO=5;CIGAR=1X;DP=70;DPB=70;DPRA=1.78378;EPP=13.8677;EPPR=144.156;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=191;QR=2564;RO=65;RPL=0;RPP=13.8677;RPPR=144.156;RPR=5;RUN=1;SAF=5;SAP=13.8677;SAR=0;SRF=65;SRP=144.156;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:33:28,5:28:1109:5:191:-7.62247,0,-90.1638 0/0:12:12,0:12:473:0:0:0,-3.61236,-42.9185 0/0:25:25,0:25:982:0:0:0,-7.52575,-88.6793 dDocent_Contig_8137 98 . N T 693.704 . AB=0;ABP=0;AC=4;AF=1;AN=4;AO=22;CIGAR=1X;DP=22;DPB=22;DPRA=0;EPP=50.7827;EPPR=0;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=0;NS=2;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=760;QR=0;RO=0;RPL=22;RPP=50.7827;RPPR=0;RPR=0;RUN=1;SAF=22;SAP=50.7827;SAR=0;SRF=0;SRP=0;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 1/1:19:0,19:0:0:19:655:-59.273,-5.71957,0 ./.:.:.:.:.:.:.:. 1/1:3:0,3:0:0:3:105:-9.79616,-0.90309,0 dDocent_Contig_8138 63 . A G 56.1026 . AB=0.133333;ABP=20.5268;AC=2;AF=0.333334;AN=6;AO=3;CIGAR=2X1M;DP=33;DPB=33;DPRA=0;EPP=3.73412;EPPR=63.8115;GTI=0;LEN=1;MEANALT=1;MQM=52.6667;MQMR=60;NS=3;NUMALT=2;ODDS=0;PAIRED=0;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=114;QR=1102;RO=28;RPL=3;RPP=9.52472;RPPR=63.8115;RPR=0;RUN=1;SAF=1;SAP=3.73412;SAR=2;SRF=28;SRP=63.8115;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|0:13:12,0,1:12:471:0,1:0,34:0,-3.61236,-42.395,-0.517709,-39.6439,-39.3429 0|1:5:3,2,0:3:115:2,0:80,0:-6.08664,0,-9.21895,-6.98973,-9.82101,-16.4178 0|1:15:13,0,2:13:516:0,2:0,80:-3.03284,-6.94623,-49.4215,0,-42.8725,-42.2704 dDocent_Contig_8139 98 . N A 123.915 . AB=0;ABP=0;AC=2;AF=1;AN=2;AO=4;CIGAR=1X;DP=4;DPB=4;DPRA=0;EPP=11.6962;EPPR=0;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=0;NS=1;NUMALT=1;ODDS=7.37776;PAIRED=1;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=134;QR=0;RO=0;RPL=4;RPP=11.6962;RPPR=0;RPR=0;RUN=1;SAF=4;SAP=11.6962;SAR=0;SRF=0;SRP=0;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 1/1:4:0,4:0:0:4:134:-12.3912,-1.20412,0 ./.:.:.:.:.:.:.:. ./.:.:.:.:.:.:.:. dDocent_Contig_8142 88 . G A 436.153 . AB=0.323529;ABP=21.4039;AC=3;AF=0.5;AN=6;AO=22;CIGAR=1X;DP=68;DPB=68;DPRA=0;EPP=50.7827;EPPR=102.898;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=761;QR=1605;RO=46;RPL=22;RPP=50.7827;RPPR=102.898;RPR=0;RUN=1;SAF=22;SAP=50.7827;SAR=0;SRF=46;SRP=102.898;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:49:36,13:36:1256:13:449:-25.9902,0,-98.5949 0/1:5:1,4:1:36:4:142:-11.6241,0,-2.09312 0/1:14:9,5:9:313:5:170:-11.4204,0,-24.2926 dDocent_Contig_8144 20 . A G 152.901 . AB=0.318182;ABP=9.32731;AC=2;AF=0.333333;AN=6;AO=8;CIGAR=1X;DP=37;DPB=37;DPRA=0;EPP=20.3821;EPPR=65.983;GTI=0;LEN=1;MEANALT=1;MQM=54.75;MQMR=60;NS=3;NUMALT=1;ODDS=3.46945e-18;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=315;QR=1127;RO=29;RPL=0;RPP=20.3821;RPPR=65.983;RPR=8;RUN=1;SAF=8;SAP=20.3821;SAR=0;SRF=29;SRP=65.983;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:15:12,3:12:457:3:116:-6.2732,0,-36.9554 0/1:7:3,4:3:122:4:159:-12.5393,0,-9.26528 0/0:15:14,1:14:548:1:40:0,-0.519771,-45.6634 dDocent_Contig_8145 142 . T C 156.126 . AB=0.321429;ABP=10.7656;AC=2;AF=0.333333;AN=6;AO=9;CIGAR=1X;DP=40;DPB=40;DPRA=1.16667;EPP=22.5536;EPPR=68.1545;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=1.73472e-18;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=299;QR=1007;RO=30;RPL=0;RPP=22.5536;RPPR=68.1545;RPR=9;RUN=1;SAF=0;SAP=22.5536;SAR=9;SRF=0;SRP=68.1545;SRR=30;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:21:15,6:15:513:6:200:-12.0053,0,-40.1742 0/1:7:4,3:4:138:3:99:-7.13019,0,-10.6532 0/0:12:11,0:11:356:0:0:0,-3.31133,-32.28 dDocent_Contig_8147 33 . A G 78.6328 . AB=0;ABP=0;AC=2;AF=0.333333;AN=6;AO=3;CIGAR=1X;DP=37;DPB=37;DPRA=0.380952;EPP=9.52472;EPPR=76.8404;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=122;QR=1362;RO=34;RPL=0;RPP=9.52472;RPPR=76.8404;RPR=3;RUN=1;SAF=3;SAP=9.52472;SAR=0;SRF=34;SRP=76.8404;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:21:21,0:21:836:0:0:0,-6.32163,-75.5524 1/1:2:0,2:0:0:2:81:-7.68573,-0.60206,0 0/0:14:13,1:13:526:1:41:0,-0.119853,-43.5919 dDocent_Contig_8148 187 . G A 33.1955 . AB=0.142857;ABP=26.2761;AC=1;AF=0.166667;AN=6;AO=3;CIGAR=1X;DP=49;DPB=49;DPRA=1.5;EPP=9.52472;EPPR=102.898;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=123;QR=1835;RO=46;RPL=3;RPP=9.52472;RPPR=102.898;RPR=0;RUN=1;SAF=0;SAP=9.52472;SAR=3;SRF=0;SRP=102.898;SRR=46;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:24:24,0:24:970:0:0:0,-7.22472,-87.5979 0/0:4:4,0:4:152:0:0:0,-1.20412,-14.0456 0/1:21:18,3:18:713:3:123:-5.14316,0,-58.1626 dDocent_Contig_8150 107 . N T 173.037 . AB=0;ABP=0;AC=6;AF=1;AN=6;AO=5;CIGAR=1X;DP=5;DPB=5;DPRA=0;EPP=13.8677;EPPR=0;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=0;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=174;QR=0;RO=0;RPL=0;RPP=13.8677;RPPR=0;RPR=5;RUN=1;SAF=0;SAP=13.8677;SAR=5;SRF=0;SRP=0;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 1/1:1:0,1:0:0:1:35:-3.49863,-0.30103,0 1/1:1:0,1:0:0:1:35:-3.49863,-0.30103,0 1/1:3:0,3:0:0:3:104:-9.70309,-0.90309,0 dDocent_Contig_8151 22 . T C 155.566 . AB=0.1875;ABP=43.7254;AC=2;AF=0.333333;AN=6;AO=9;CIGAR=1X;DP=52;DPB=52;DPRA=6;EPP=22.5536;EPPR=96.3836;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=364;QR=1725;RO=43;RPL=0;RPP=22.5536;RPPR=96.3836;RPR=9;RUN=1;SAF=9;SAP=22.5536;SAR=0;SRF=43;SRP=96.3836;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:34:29,5:29:1159:5:202:-8.32685,0,-94.3532 0/0:4:4,0:4:157:0:0:0,-1.20412,-14.5064 0/1:14:10,4:10:409:4:162:-10.7525,0,-32.9562 dDocent_Contig_8152 54 . T A 695.957 . AB=0.419355;ABP=6.51267;AC=3;AF=0.5;AN=6;AO=26;CIGAR=1X;DP=62;DPB=62;DPRA=0;EPP=59.4686;EPPR=81.1833;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=3.46945e-18;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=1030;QR=1444;RO=36;RPL=26;RPP=59.4686;RPPR=81.1833;RPR=0;RUN=1;SAF=26;SAP=59.4686;SAR=0;SRF=36;SRP=81.1833;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:27:15,12:15:592:12:480:-35.4223,0,-45.4869 0/1:15:6,9:6:243:9:353:-27.612,0,-17.7321 0/1:20:15,5:15:609:5:197:-12.0843,0,-49.127 dDocent_Contig_8153 203 . T A 105.302 . AB=0;ABP=0;AC=2;AF=0.333333;AN=6;AO=3;CIGAR=1X;DP=25;DPB=25;DPRA=0.272727;EPP=9.52472;EPPR=50.7827;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=0.863636;PAO=0;PQA=0;PQR=0;PRO=0;QA=111;QR=806;RO=22;RPL=3;RPP=9.52472;RPPR=50.7827;RPR=0;RUN=1;SAF=0;SAP=9.52472;SAR=3;SRF=0;SRP=50.7827;SRR=22;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:10:10,0:10:368:0:0:0,-3.0103,-33.469 0/0:12:12,0:12:438:0:0:0,-3.61236,-39.7635 1/1:3:0,3:0:0:3:111:-10.3539,-0.90309,0 dDocent_Contig_8154 7 . T C 2345.6 . AB=0.29932;ABP=54.4314;AC=5;AF=0.833333;AN=6;AO=44;CIGAR=1X4M;DP=147;DPB=147;DPRA=0;EPP=98.5551;EPPR=57.2971;GTI=0;LEN=1;MEANALT=3;MQM=60;MQMR=60;NS=3;NUMALT=4;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=1702;QR=957;RO=25;RPL=0;RPP=98.5551;RPPR=57.2971;RPR=44;RUN=1;SAF=44;SAP=98.5551;SAR=0;SRF=25;SRP=57.2971;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 1|1:69:14,0,0,37,18:14:538:0,0,37,18:0,0,1244,698:-107.506,-111.72,-155.893,-111.72,-155.893,-155.893,-13.1855,-57.3502,-57.3502,-46.2121,-54.3528,-98.534,-98.534,0,-93.1154 0|1:19:3,0,3,2,10:3:115:0,3,2,10:0,116,44,384:-30.7162,-31.6192,-41.0671,-27.2594,-36.7034,-35.8003,-28.82,-38.2656,-33.9092,-37.6635,0,-9.49046,-5.1426,-6.69751,-6.48016 1|1:59:8,8,0,27,16:8:304:8,0,27,16:312,0,973,620:-101.861,-78.6183,-101.143,-104.269,-103.552,-129.201,-26.0085,-25.2894,-50.9377,-42.8099,-53.3249,-52.6069,-78.2593,0,-73.4428 dDocent_Contig_8155 36 . C G 253.686 . AB=0.3;ABP=16.9077;AC=1;AF=0.166667;AN=6;AO=12;CIGAR=1X;DP=58;DPB=58;DPRA=4.44444;EPP=29.068;EPPR=102.898;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=429;QR=1829;RO=46;RPL=0;RPP=29.068;RPPR=102.898;RPR=12;RUN=1;SAF=12;SAP=29.068;SAR=0;SRF=46;SRP=102.898;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:40:28,12:28:1117:12:429:-26.8913,0,-88.7727 0/0:4:4,0:4:160:0:0:0,-1.20412,-14.7834 0/0:14:14,0:14:552:0:0:0,-4.21442,-50.0206 dDocent_Contig_8157 9 . T A 41.6367 . AB=0.115385;ABP=69.8248;AC=1;AF=0.166667;AN=6;AO=6;CIGAR=1X;DP=92;DPB=92;DPRA=2.6;EPP=16.0391;EPPR=189.757;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=59.9651;NS=3;NUMALT=1;ODDS=3.46945e-18;PAIRED=1;PAIREDR=0.883721;PAO=0;PQA=0;PQR=0;PRO=0;QA=233;QR=3313;RO=86;RPL=0;RPP=16.0391;RPPR=189.757;RPR=6;RUN=1;SAF=6;SAP=16.0391;SAR=0;SRF=86;SRP=189.757;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:52:46,6:46:1779:6:233:-5.68652,0,-144.709 0/0:15:15,0:15:571:0:0:0,-4.51545,-51.7279 0/0:25:25,0:25:963:0:0:0,-7.52575,-86.9836 dDocent_Contig_8159 25 . G A 75.3588 . AB=0.2;ABP=18.6449;AC=2;AF=0.333333;AN=6;AO=4;CIGAR=1X;DP=26;DPB=26;DPRA=1.66667;EPP=11.6962;EPPR=50.7827;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=164;QR=879;RO=22;RPL=0;RPP=11.6962;RPPR=50.7827;RPR=4;RUN=1;SAF=4;SAP=11.6962;SAR=0;SRF=22;SRP=50.7827;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:6:6,0:6:240:0:0:0,-1.80618,-21.9749 0/1:7:4,3:4:163:3:123:-9.35758,0,-12.9512 0/1:13:12,1:12:476:1:41:-0.181177,0,-39.2741 dDocent_Contig_8160 7 . T A 329.213 . AB=0.25;ABP=37.7539;AC=2;AF=0.333333;AN=6;AO=16;CIGAR=1X;DP=88;DPB=88;DPRA=1.33333;EPP=37.7539;EPPR=159.356;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=611;QR=2731;RO=72;RPL=0;RPP=37.7539;RPPR=159.356;RPR=16;RUN=1;SAF=16;SAP=37.7539;SAR=0;SRF=72;SRP=159.356;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:47:39,8:39:1474:8:308:-13.934,0,-118.79 0/1:17:9,8:9:334:8:303:-22.5102,0,-25.2933 0/0:24:24,0:24:923:0:0:0,-7.22472,-83.3867 dDocent_Contig_8161 17 . G T 475.561 . AB=0.515152;ABP=3.0761;AC=1;AF=0.166667;AN=6;AO=17;CIGAR=1X;DP=43;DPB=43;DPRA=6.6;EPP=39.9253;EPPR=59.4686;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=652;QR=981;RO=26;RPL=0;RPP=39.9253;RPPR=59.4686;RPR=17;RUN=1;SAF=17;SAP=39.9253;SAR=0;SRF=26;SRP=59.4686;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:33:16,17:16:600:17:652:-49.0786,0,-44.4018 0/0:2:2,0:2:76:0:0:0,-0.60206,-7.21467 0/0:8:8,0:8:305:0:0:0,-2.40824,-27.8101 dDocent_Contig_8162 36 . A G 84.0116 . AB=0.137931;ABP=69.053;AC=2;AF=0.333333;AN=6;AO=8;CIGAR=1X;DP=69;DPB=69;DPRA=2.63636;EPP=20.3821;EPPR=135.47;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=318;QR=2394;RO=61;RPL=0;RPP=20.3821;RPPR=135.47;RPR=8;RUN=1;SAF=8;SAP=20.3821;SAR=0;SRF=61;SRP=135.47;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:27:23,4:23:905:4:160:-6.65562,0,-73.6253 0/0:11:11,0:11:419:0:0:0,-3.31133,-38.0549 0/1:31:27,4:27:1070:4:158:-5.26834,0,-87.2581 dDocent_Contig_8164 15 . A G 303.388 . AB=0.185185;ABP=26.2531;AC=3;AF=0.5;AN=6;AO=11;CIGAR=1X;DP=38;DPB=38;DPRA=3.3;EPP=26.8965;EPPR=61.6401;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=436;QR=1064;RO=27;RPL=0;RPP=26.8965;RPPR=61.6401;RPR=11;RUN=1;SAF=11;SAP=26.8965;SAR=0;SRF=27;SRP=61.6401;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:27:22,5:22:860:5:196:-9.88612,0,-69.5778 1/1:6:0,6:0:0:6:240:-21.9754,-1.80618,0 0/0:5:5,0:5:204:0:0:0,-1.50515,-18.744 dDocent_Contig_8165 34 . C T 744.483 . AB=0.564103;ABP=4.40227;AC=4;AF=0.666667;AN=6;AO=26;CIGAR=1X;DP=43;DPB=43;DPRA=0;EPP=59.4686;EPPR=39.9253;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=985;QR=694;RO=17;RPL=0;RPP=59.4686;RPPR=39.9253;RPR=26;RUN=1;SAF=26;SAP=59.4686;SAR=0;SRF=17;SRP=39.9253;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:21:5,16:5:203:16:597:-47.7307,0,-12.3314 1/1:4:0,4:0:0:4:150:-13.8651,-1.20412,0 0/1:18:12,6:12:491:6:238:-16.3753,0,-39.1224 dDocent_Contig_8166 69 . T G 1053.8 . AB=0.689655;ABP=21.1309;AC=3;AF=0.5;AN=6;AO=40;CIGAR=1X;DP=58;DPB=58;DPRA=0;EPP=89.8692;EPPR=42.0968;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=1415;QR=647;RO=18;RPL=40;RPP=89.8692;RPPR=42.0968;RPR=0;RUN=1;SAF=40;SAP=89.8692;SAR=0;SRF=18;SRP=42.0968;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:26:7,19:7:246:19:668:-52.6175,0,-14.6502 0/1:10:4,6:4:146:6:223:-17.4178,0,-10.4875 0/1:22:7,15:7:255:15:524:-40.8676,0,-16.6792 dDocent_Contig_8167 69 . G A 757.819 . AB=0.517857;ABP=3.16541;AC=2;AF=0.333333;AN=6;AO=29;CIGAR=1X;DP=61;DPB=61;DPRA=5.6;EPP=65.983;EPPR=72.4974;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=1061;QR=1159;RO=32;RPL=29;RPP=65.983;RPPR=72.4974;RPR=0;RUN=1;SAF=29;SAP=65.983;SAR=0;SRF=32;SRP=72.4974;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:46:23,23:23:834:23:846:-62.617,0,-61.5357 0/0:5:5,0:5:186:0:0:0,-1.50515,-17.1013 0/1:10:4,6:4:139:6:215:-16.6877,0,-9.84239 dDocent_Contig_8169 120 . G T 178.447 . AB=0.275;ABP=20.5992;AC=2;AF=0.333333;AN=6;AO=12;CIGAR=1X;DP=71;DPB=71;DPRA=0;EPP=29.068;EPPR=131.127;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=395;QR=1987;RO=59;RPL=0;RPP=29.068;RPPR=131.127;RPR=12;RUN=1;SAF=0;SAP=29.068;SAR=12;SRF=0;SRP=131.127;SRR=59;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:31:30,1:30:1005:1:31:0,-6.23248,-87.6538 0/1:10:6,4:6:202:4:129:-8.91942,0,-15.4999 0/1:30:23,7:23:780:7:235:-12.4482,0,-61.4828 dDocent_Contig_8170 13 . T C 444.323 . AB=0.186047;ABP=113.452;AC=3;AF=0.5;AN=6;AO=24;CIGAR=1X;DP=129;DPB=129;DPRA=0;EPP=55.1256;EPPR=231.015;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=0.990476;PAO=0;PQA=0;PQR=0;PRO=0;QA=974;QR=4210;RO=105;RPL=0;RPP=55.1256;RPPR=231.015;RPR=24;RUN=1;SAF=24;SAP=55.1256;SAR=0;SRF=105;SRP=231.015;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:74:58,16:58:2328:16:646:-36.1966,0,-187.395 0/1:16:14,2:14:555:2:82:-2.9632,0,-45.4745 0/1:39:33,6:33:1327:6:246:-10.7799,0,-107.954 dDocent_Contig_8171 19 . C T 1129.76 . AB=0.394495;ABP=13.5489;AC=3;AF=0.5;AN=6;AO=43;CIGAR=1X;DP=109;DPB=109;DPRA=0;EPP=96.3836;EPPR=146.327;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=1670;QR=2591;RO=66;RPL=0;RPP=96.3836;RPPR=146.327;RPR=43;RUN=1;SAF=43;SAP=96.3836;SAR=0;SRF=66;SRP=146.327;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:73:48,25:48:1876:25:991:-67.5191,0,-147.09 0/1:11:4,7:4:160:7:272:-21.5353,0,-11.4727 0/1:25:14,11:14:555:11:407:-29.4441,0,-42.768 dDocent_Contig_8172 27 . G A 108.512 . AB=0.184211;ABP=35.9253;AC=2;AF=0.333333;AN=6;AO=7;CIGAR=1X1M1X3M1X;DP=44;DPB=44;DPRA=3.16667;EPP=18.2106;EPPR=83.3548;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=275;QR=1426;RO=37;RPL=0;RPP=18.2106;RPPR=83.3548;RPR=7;RUN=1;SAF=7;SAP=18.2106;SAR=0;SRF=37;SRP=83.3548;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|1:19:14,5:14:540:5:196:-12.2949,0,-43.2215 0|0:6:6,0:6:217:0:0:0,-1.80618,-19.8764 0|1:19:17,2:17:669:2:79:-1.77806,0,-54.8249 dDocent_Contig_8173 117 . C G 59.5968 . AB=0.266667;ABP=10.1038;AC=1;AF=0.166667;AN=6;AO=5;CIGAR=1X;DP=49;DPB=49;DPRA=0.666667;EPP=13.8677;EPPR=98.5551;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=165;QR=1430;RO=44;RPL=0;RPP=13.8677;RPPR=98.5551;RPR=5;RUN=1;SAF=0;SAP=13.8677;SAR=5;SRF=0;SRP=98.5551;SRR=44;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:21:21,0:21:687:0:0:0,-6.32163,-62.1364 0/0:13:12,1:12:401:1:32:0,-0.714077,-33.2135 0/1:15:11,4:11:342:4:133:-7.78331,0,-26.5676 dDocent_Contig_8175 62 . A G 38.4009 . AB=0.109091;ABP=76.0113;AC=2;AF=0.333333;AN=6;AO=6;CIGAR=1X;DP=61;DPB=61;DPRA=4.58333;EPP=16.0391;EPPR=120.27;GTI=0;LEN=1;MEANALT=1.5;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=0.5;PAIREDR=0.611111;PAO=0;PQA=0;PQR=0;PRO=0;QA=237;QR=2088;RO=54;RPL=6;RPP=16.0391;RPPR=120.27;RPR=0;RUN=1;SAF=6;SAP=16.0391;SAR=0;SRF=54;SRP=120.27;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:31:27,4:27:1047:4:159:-5.36002,0,-85.1975 0/1:24:21,2:21:801:2:78:-0.296395,0,-65.3941 0/0:6:6,0:6:240:0:0:0,-1.80618,-21.976 dDocent_Contig_8176 19 . T G 94.1596 . AB=0.123288;ABP=92.9925;AC=1;AF=0.166667;AN=6;AO=18;CIGAR=1X;DP=253;DPB=253;DPRA=0;EPP=42.0968;EPPR=513.306;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=728;QR=9486;RO=235;RPL=0;RPP=42.0968;RPPR=513.306;RPR=18;RUN=1;SAF=18;SAP=42.0968;SAR=0;SRF=235;SRP=513.306;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:157:149,8:149:5983:8:323:0,-17.8231,-508.791 0/0:23:22,1:22:898:1:40:0,-2.92801,-77.1282 0/1:73:64,9:64:2605:9:365:-11.2399,0,-212.585 dDocent_Contig_8177 17 . T C 162.724 . AB=0.105263;ABP=28.7251;AC=0;AF=0;AN=6;AO=2;CIGAR=1X2M1X;DP=49;DPB=49;DPRA=0;EPP=7.35324;EPPR=81.1833;GTI=0;LEN=1;MEANALT=2;MQM=42;MQMR=60;NS=3;NUMALT=3;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=81;QR=1406;RO=36;RPL=0;RPP=7.35324;RPPR=81.1833;RPR=2;RUN=1;SAF=2;SAP=7.35324;SAR=0;SRF=36;SRP=81.1833;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|0:12:9,0,0,3:9:355:0,0,3:0,0,123:-7.85243,-10.5617,-39.7597,-10.5617,-39.7597,-39.7597,0,-29.6036,-29.6036,-28.7005 0|0:19:14,2,0,3:14:540:2,0,3:81,0,118:-5.4979,-3.44855,-47.183,-9.71232,-47.785,-54.0528,0,-38.0781,-44.3459,-43.4428 0|0:18:13,0,4,1:13:511:0,4,1:0,151,40:-8.44485,-12.3582,-54.3993,0,-42.0268,-40.8227,-9.05972,-51.1046,-38.7322,-50.8036 dDocent_Contig_8178 19 . G T 48.3121 . AB=0.148148;ABP=32.0437;AC=1;AF=0.166667;AN=6;AO=4;CIGAR=1X;DP=55;DPB=55;DPRA=1.92857;EPP=11.6962;EPPR=113.755;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=0.941176;PAO=0;PQA=0;PQR=0;PRO=0;QA=160;QR=2037;RO=51;RPL=0;RPP=11.6962;RPPR=113.755;RPR=4;RUN=1;SAF=4;SAP=11.6962;SAR=0;SRF=51;SRP=113.755;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:20:20,0:20:801:0:0:0,-6.0206,-72.4091 0/0:8:8,0:8:317:0:0:0,-2.40824,-28.8944 0/1:27:23,4:23:919:4:160:-6.65511,0,-74.8839 dDocent_Contig_8179 65 . C G 209.976 . AB=0.310345;ABP=12.0706;AC=2;AF=0.333333;AN=6;AO=9;CIGAR=1X;DP=41;DPB=41;DPRA=1.20833;EPP=22.5536;EPPR=72.4974;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=361;QR=1271;RO=32;RPL=9;RPP=22.5536;RPPR=72.4974;RPR=0;RUN=1;SAF=9;SAP=22.5536;SAR=0;SRF=32;SRP=72.4974;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:12:12,0:12:476:0:0:0,-3.61236,-43.1893 0/1:10:8,2:8:324:2:79:-4.48694,0,-26.5191 0/1:19:12,7:12:471:7:282:-20.033,0,-37.014 dDocent_Contig_8180 10 . T A 286.366 . AB=0.242424;ABP=22.0271;AC=3;AF=0.5;AN=6;AO=8;CIGAR=1X2M2X1M;DP=39;DPB=39;DPRA=0;EPP=20.3821;EPPR=37.7539;GTI=0;LEN=1;MEANALT=3;MQM=55;MQMR=60;NS=3;NUMALT=4;ODDS=0;PAIRED=0.125;PAIREDR=0.9375;PAO=0;PQA=0;PQR=0;PRO=0;QA=312;QR=635;RO=16;RPL=0;RPP=20.3821;RPPR=37.7539;RPR=8;RUN=1;SAF=8;SAP=20.3821;SAR=0;SRF=16;SRP=37.7539;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|1:23:8,3,5,2,4:8:315:3,5,2,4:119,197,82,160:-13.3968,-6.00879,-31.0174,0,-16.1133,-24.404,-9.03474,-25.1506,-19.1395,-34.3451,-2.62377,-18.7394,-12.7288,-21.7659,-27.3318 1|0:6:1,4,0,1,0:1:40:4,0,1,0:159,0,41,0:-12.8782,-0.098888,-2.1849,-13.1792,-3.38902,-16.4743,-9.79268,0,-13.0883,-12.7872,-13.1792,-3.38902,-16.4743,-13.0883,-16.4743 0|1:10:7,0,3,0,0:7:280:0,3,0,0:0,115,0,0:-7.71291,-9.82012,-32.8956,0,-23.4634,-22.5604,-9.82012,-32.8956,-23.4634,-32.8956,-9.82012,-32.8956,-23.4634,-32.8956,-32.8956 dDocent_Contig_8181 7 . T A 2190.58 . AB=0.177839;ABP=662;AC=3;AF=0.5;AN=6;AO=130;CIGAR=1X;DP=731;DPB=731;DPRA=0;EPP=285.302;EPPR=1308.07;GTI=0;LEN=1;MEANALT=1;MQM=53.3462;MQMR=52.5907;NS=3;NUMALT=1;ODDS=5.55112e-17;PAIRED=1;PAIREDR=0.998336;PAO=0;PQA=0;PQR=0;PRO=0;QA=4964;QR=22892;RO=601;RPL=0;RPP=285.302;RPPR=1308.07;RPR=130;RUN=1;SAF=130;SAP=285.302;SAR=0;SRF=601;SRP=1308.07;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:387:312,75:312:11874:75:2858:-140.029,0,-930.085 0/1:94:74,20:74:2830:20:761:-39.2725,0,-224.771 0/1:250:215,35:215:8188:35:1345:-45.2798,0,-630.103 dDocent_Contig_8182 8 . C G 31.0898 . AB=0.175;ABP=76.4061;AC=3;AF=0.5;AN=6;AO=14;CIGAR=1X;DP=80;DPB=80;DPRA=0;EPP=33.4109;EPPR=119.301;GTI=0;LEN=1;MEANALT=1.33333;MQM=25;MQMR=56.6923;NS=3;NUMALT=1;ODDS=0;PAIRED=0;PAIREDR=0.846154;PAO=0;PQA=0;PQR=0;PRO=0;QA=486;QR=2491;RO=65;RPL=0;RPP=33.4109;RPPR=144.156;RPR=14;RUN=1;SAF=0;SAP=33.4109;SAR=14;SRF=62;SRP=119.301;SRR=3;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:48:39,8:39:1505:8:278:-3.53245,0,-119.576 0/1:12:10,2:10:375:2:69:-1.04966,0,-30.4864 0/1:20:16,4:16:611:4:139:-3.06739,0,-44.9597 dDocent_Contig_8183 15 . A T 3153.86 . AB=0.0395137;ABP=608.97;AC=1;AF=0.166667;AN=6;AO=13;CIGAR=1X1M1X2M1X2M2X;DP=329;DPB=361.1;DPRA=0;EPP=31.2394;EPPR=63.8115;GTI=0;LEN=1;MEANALT=9;MQM=40;MQMR=54.6429;NS=3;NUMALT=8;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=512;QR=1091;RO=28;RPL=0;RPP=31.2394;RPPR=63.8115;RPR=13;RUN=1;SAF=13;SAP=31.2394;SAR=0;SRF=28;SRP=63.8115;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|0:183:16,16,10,9,3,26,28,22,45:16:621:16,10,9,3,26,28,22,45:621,391,358,99,1037,1040,858,1752:-167.989,-122.177,-167.604,-143.048,-142.663,-190.281,-145.654,-145.269,-166.14,-193.188,-165.532,-165.146,-186.017,-188.623,-214.872,-87.3994,-87.0141,-107.885,-110.492,-130.37,-129.817,-91.3682,-90.9829,-111.854,-114.46,-134.338,-56.2056,-133.183,-102.29,-101.904,-122.776,-125.382,-145.26,-67.1269,-71.096,-145.911,-35.1634,-34.7781,-55.6495,-58.2554,-78.1334,0,-3.97094,-14.8908,-71.8608 1|0:49:3,11,2,1,0,6,9,0,16:3:122:11,2,1,0,6,9,0,16:414,80,40,0,231,340,0,517:-59.9205,-27.7543,-34.5117,-54.7663,-31.7653,-64.2315,-57.795,-34.7942,-61.805,-67.5611,-60.8236,-37.823,-64.8336,-67.8621,-70.8907,-41.8519,-18.8494,-45.8624,-48.8912,-51.9199,-50.1137,-34.2989,-11.2966,-38.3097,-41.3384,-44.3671,-25.3944,-41.6578,-60.8236,-37.823,-64.8336,-67.8621,-70.8907,-51.9199,-44.3671,-70.8907,-22.9928,0,-27.0034,-30.0314,-33.0594,-14.0911,-6.54318,-33.0594,-28.2429 0|0:97:9,9,1,17,5,13,24,4,14:9:348:9,1,17,5,13,24,4,14:348,41,661,199,510,914,158,514:-92.9989,-67.4216,-93.124,-92.6376,-92.7628,-120.748,-45.4535,-45.5787,-70.7946,-68.7475,-80.6155,-80.7406,-105.956,-58.7726,-107.522,-53.7701,-53.8953,-79.1116,-31.9272,-67.0894,-78.2688,-21.842,-21.9672,-47.1836,0,-35.1615,-8.31511,-43.0294,-82.7058,-82.831,-108.047,-60.8627,-96.0248,-69.1796,-37.2515,-109.913,-57.2358,-57.361,-82.5764,-35.3941,-70.5546,-43.7098,-11.7833,-72.6448,-81.4325 dDocent_Contig_8184 10 . T A 867.85 . AB=0.314815;ABP=35.1803;AC=3;AF=0.5;AN=6;AO=34;CIGAR=1X;DP=108;DPB=108;DPRA=0;EPP=76.8404;EPPR=163.699;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=1375;QR=2994;RO=74;RPL=0;RPP=76.8404;RPPR=163.699;RPR=34;RUN=1;SAF=34;SAP=76.8404;SAR=0;SRF=74;SRP=163.699;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:70:45,25:45:1816:25:1006:-69.7622,0,-142.573 0/1:10:7,3:7:284:3:123:-8.45449,0,-22.9237 0/1:28:22,6:22:894:6:246:-14.0913,0,-72.3343 dDocent_Contig_8185 9 . T A 609.166 . AB=0.231343;ABP=87.0171;AC=3;AF=0.5;AN=6;AO=31;CIGAR=1X;DP=134;DPB=134;DPRA=0;EPP=40.0654;EPPR=162.582;GTI=0;LEN=1;MEANALT=1;MQM=57.2903;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=0;PAIREDR=0.23301;PAO=0;PQA=0;PQR=0;PRO=0;QA=1178;QR=3944;RO=103;RPL=0;RPP=70.3259;RPPR=226.672;RPR=31;RUN=1;SAF=27;SAP=40.0654;SAR=4;SRF=95;SRP=162.582;SRR=8;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:72:54,18:54:2079:18:696:-41.1947,0,-165.667 0/1:31:23,8:23:883:8:288:-16.7439,0,-70.4585 0/1:31:26,5:26:982:5:194:-8.50091,0,-79.3586 dDocent_Contig_8186 22 . T C 3152.44 . AB=0.64557;ABP=32.0915;AC=3;AF=0.5;AN=6;AO=102;CIGAR=1X;DP=158;DPB=158;DPRA=0;EPP=224.5;EPPR=124.613;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=4084;QR=2137;RO=56;RPL=0;RPP=224.5;RPPR=124.613;RPR=102;RUN=1;SAF=102;SAP=224.5;SAR=0;SRF=56;SRP=124.613;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:103:31,72:31:1170:72:2883:-228.566,0,-74.5894 0/1:12:3,9:3:115:9:351:-28.3337,0,-7.11253 0/1:43:22,21:22:852:21:850:-63.8675,0,-64.0565 dDocent_Contig_8187 19 . T C 3049.94 . AB=0.0769231;ABP=43.4331;AC=0;AF=0;AN=6;AO=2;CIGAR=1X2M1X;DP=140;DPB=140;DPRA=0;EPP=7.35324;EPPR=92.0407;GTI=0;LEN=1;MEANALT=2;MQM=60;MQMR=60;NS=3;NUMALT=2;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=51;QR=1594;RO=41;RPL=0;RPP=7.35324;RPPR=92.0407;RPR=2;RUN=1;SAF=2;SAP=7.35324;SAR=0;SRF=41;SRP=92.0407;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|0:103:23,0,80:23:889:0,80:0,3219:-258.764,-265.688,-338.691,0,-73.3923,-49.3099 0|0:11:6,0,5:6:224:0,5:0,205:-15.5237,-17.3299,-35.6462,0,-18.7093,-17.2041 0|0:26:12,2,12:12:481:2,12:51,482:-36.2292,-35.8748,-74.9017,0,-35.7871,-36.1417 dDocent_Contig_8188 16 . C A 55.3652 . AB=0.190476;ABP=20.4855;AC=1;AF=0.166667;AN=6;AO=4;CIGAR=2X2M1X;DP=43;DPB=43;DPRA=1.90909;EPP=11.6962;EPPR=87.6977;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=148;QR=1539;RO=39;RPL=0;RPP=11.6962;RPPR=87.6977;RPR=4;RUN=1;SAF=4;SAP=11.6962;SAR=0;SRF=39;SRP=87.6977;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|0:18:18,0:18:708:0:0:0,-5.41854,-64.0471 0|0:4:4,0:4:159:0:0:0,-1.20412,-14.6923 0|1:21:17,4:17:672:4:148:-7.36034,0,-54.4887 dDocent_Contig_8189 22 . T G 413.464 . AB=0.140625;ABP=146.599;AC=2;AF=0.333333;AN=6;AO=18;CIGAR=2M3X;DP=128;DPB=125.4;DPRA=0;EPP=26.6552;EPPR=123.204;GTI=0;LEN=1;MEANALT=3.33333;MQM=60;MQMR=60;NS=3;NUMALT=4;ODDS=0;PAIRED=0.777778;PAIREDR=0.851351;PAO=0;PQA=0;PQR=0;PRO=0;QA=716;QR=2869;RO=74;RPL=0;RPP=42.0968;RPPR=163.699;RPR=18;RUN=1;SAF=16;SAP=26.6552;SAR=2;SRF=69;SRP=123.204;SRR=5;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|0:68:39,8,9,5,6:39:1500:8,9,5,6:319,334,201,191:-14.5475,0,-120.762,-0.303754,-97.1884,-120.754,-9.71395,-106.603,-106.897,-131.373,-12.1871,-109.062,-109.356,-118.77,-133.529 0|1:20:15,0,0,5,0:15:591:0,0,5,0:0,0,199,0:-12.2681,-16.7836,-65.4028,-16.7836,-65.4028,-65.4028,0,-49.0158,-49.0158,-47.5107,-16.7836,-65.4028,-65.4028,-49.0158,-65.4028 0|1:40:20,5,0,8,6:20:778:5,0,8,6:184,0,316,238:-19.9871,-10.9702,-73.3976,-26.0077,-74.9028,-89.9433,0,-48.9,-63.94,-61.5318,-6.95236,-55.8487,-70.8886,-44.8849,-69.0824 dDocent_Contig_8190 8 . C T 56.1039 . AB=0.2;ABP=18.6449;AC=2;AF=0.333333;AN=6;AO=4;CIGAR=2X;DP=48;DPB=48;DPRA=0.357143;EPP=11.6962;EPPR=96.3836;GTI=0;LEN=1;MEANALT=1.5;MQM=60;MQMR=59.8605;NS=3;NUMALT=1;ODDS=0;PAIRED=0;PAIREDR=0.953488;PAO=0;PQA=0;PQR=0;PRO=0;QA=154;QR=1657;RO=43;RPL=0;RPP=11.6962;RPPR=96.3836;RPR=4;RUN=1;SAF=4;SAP=11.6962;SAR=0;SRF=43;SRP=96.3836;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|0:28:28,0:28:1079:0:0:0,-8.42884,-97.4062 0|1:11:8,3:8:308:3:115:-7.4137,0,-24.7712 0|1:9:7,1:7:270:1:39:-1.16353,0,-21.9817 dDocent_Contig_8191 22 . T C 1894.31 . AB=0.693182;ABP=31.5356;AC=3;AF=0.5;AN=6;AO=61;CIGAR=1X;DP=88;DPB=88;DPRA=0;EPP=135.47;EPPR=61.6401;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=2450;QR=1045;RO=27;RPL=0;RPP=135.47;RPPR=61.6401;RPR=61;RUN=1;SAF=61;SAP=135.47;SAR=0;SRF=27;SRP=61.6401;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:52:11,41:11:435:41:1650:-133.073,0,-23.8475 0/1:14:6,8:6:225:8:320:-24.953,0,-16.3918 0/1:22:10,12:10:385:12:480:-36.9284,0,-28.3708 dDocent_Contig_8192 9 . T A 693.241 . AB=0.18;ABP=47.4821;AC=0;AF=0;AN=6;AO=9;CIGAR=1X3M1X;DP=75;DPB=75;DPRA=8.33333;EPP=22.5536;EPPR=76.8404;GTI=0;LEN=1;MEANALT=3;MQM=60;MQMR=60;NS=3;NUMALT=3;ODDS=1.38778e-17;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=340;QR=1338;RO=34;RPL=0;RPP=22.5536;RPPR=76.8404;RPR=9;RUN=1;SAF=9;SAP=22.5536;SAR=0;SRF=34;SRP=76.8404;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|0:50:16,9,22,3:16:632:9,22,3:340,802,120:-55.0533,-31.9945,-81.3122,0,-24.1532,-45.391,-49.98,-74.1334,-42.1273,-101.1 0|0:6:6,0,0,0:6:234:0,0,0:0,0,0:0,-1.80618,-21.4305,-1.80618,-21.4305,-21.4305,-1.80618,-21.4305,-21.4305,-21.4305 0|0:19:12,0,7,0:12:472:0,7,0:0,277,0:-17.7936,-21.406,-60.2487,0,-39.2195,-37.1123,-21.406,-60.2487,-39.2195,-60.2487 dDocent_Contig_8193 26 . C T 102.922 . AB=0.24;ABP=17.6895;AC=2;AF=0.333333;AN=6;AO=7;CIGAR=1X;DP=40;DPB=40;DPRA=0;EPP=10.7656;EPPR=74.6689;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=0.857143;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=264;QR=1331;RO=33;RPL=0;RPP=18.2106;RPPR=74.6689;RPR=7;RUN=1;SAF=6;SAP=10.7656;SAR=1;SRF=33;SRP=74.6689;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:15:14,1:14:564:1:35:0,-1.01682,-47.6038 0/1:18:14,4:14:563:4:158:-9.18143,0,-45.5934 0/1:7:5,2:5:204:2:71:-4.63317,0,-16.6368 dDocent_Contig_8194 21 . C A 58.901 . AB=0.147059;ABP=39.7976;AC=1;AF=0.166667;AN=6;AO=5;CIGAR=1X;DP=50;DPB=50;DPRA=4.25;EPP=13.8677;EPPR=100.727;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=192;QR=1770;RO=45;RPL=0;RPP=13.8677;RPPR=100.727;RPR=5;RUN=1;SAF=5;SAP=13.8677;SAR=0;SRF=45;SRP=100.727;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:34:29,5:29:1144:5:192:-7.41224,0,-93.0146 0/0:1:1,0:1:41:0:0:0,-0.30103,-4.09457 0/0:15:15,0:15:585:0:0:0,-4.51545,-52.9898 dDocent_Contig_8195 14 . C A 57.0231 . AB=0.125;ABP=61.6401;AC=1;AF=0.166667;AN=6;AO=6;CIGAR=1X;DP=315;DPB=315;DPRA=0.359551;EPP=16.0391;EPPR=673.995;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=240;QR=12409;RO=309;RPL=0;RPP=16.0391;RPPR=673.995;RPR=6;RUN=1;SAF=6;SAP=16.0391;SAR=0;SRF=309;SRP=673.995;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:190:190,0:190:7630:0:0:0,-57.1957,-686.286 0/1:48:42,6:42:1686:6:240:-7.52621,0,-137.516 0/0:77:77,0:77:3093:0:0:0,-23.1793,-278.435 dDocent_Contig_8196 19 . G A 166.828 . AB=0.178571;ABP=53.2644;AC=1;AF=0.166667;AN=6;AO=14;CIGAR=1X;DP=149;DPB=149;DPRA=0;EPP=33.4109;EPPR=296.159;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=0.985185;PAO=0;PQA=0;PQR=0;PRO=0;QA=547;QR=5202;RO=135;RPL=0;RPP=33.4109;RPPR=296.159;RPR=14;RUN=1;SAF=14;SAP=33.4109;SAR=0;SRF=135;SRP=296.159;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:59:56,3:56:2149:3:121:0,-6.48057,-182.332 0/1:56:46,10:46:1795:10:389:-18.5067,0,-144.927 0/0:34:33,1:33:1258:1:37:0,-6.53719,-109.796 dDocent_Contig_8197 14 . G A 54.5059 . AB=0.214286;ABP=12.937;AC=1;AF=0.166667;AN=6;AO=3;CIGAR=1X;DP=24;DPB=24;DPRA=2.8;EPP=9.52472;EPPR=48.6112;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=120;QR=833;RO=21;RPL=0;RPP=9.52472;RPPR=48.6112;RPR=3;RUN=1;SAF=3;SAP=9.52472;SAR=0;SRF=21;SRP=48.6112;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:14:11,3:11:434:3:120:-6.97327,0,-35.201 0/0:3:3,0:3:119:0:0:0,-0.90309,-11.0954 0/0:7:7,0:7:280:0:0:0,-2.10721,-25.5719 dDocent_Contig_8199 16 . C A 1497.19 . AB=0.742424;ABP=36.701;AC=3;AF=0.5;AN=6;AO=49;CIGAR=1X;DP=66;DPB=66;DPRA=0;EPP=109.412;EPPR=39.9253;GTI=0;LEN=1;MEANALT=1;MQM=56.8367;MQMR=60;NS=3;NUMALT=1;ODDS=3.46945e-18;PAIRED=0.897959;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=1965;QR=685;RO=17;RPL=0;RPP=109.412;RPPR=39.9253;RPR=49;RUN=1;SAF=49;SAP=109.412;SAR=0;SRF=17;SRP=39.9253;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:46:10,36:10:404:36:1449:-115.875,0,-22.872 0/1:8:6,2:6:241:2:79:-4.18773,0,-19.6584 0/1:12:1,11:1:40:11:437:-33.5585,0,-0.383319 dDocent_Contig_8200 117 . T A 44.3005 . AB=0.181818;ABP=22.3561;AC=1;AF=0.166667;AN=6;AO=4;CIGAR=1X;DP=34;DPB=34;DPRA=3.66667;EPP=11.6962;EPPR=68.1545;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=136;QR=1039;RO=30;RPL=0;RPP=11.6962;RPPR=68.1545;RPR=4;RUN=1;SAF=0;SAP=11.6962;SAR=4;SRF=0;SRP=68.1545;SRR=30;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:22:18,4:18:625:4:136:-5.95281,0,-49.9534 0/0:4:4,0:4:140:0:0:0,-1.20412,-12.9449 0/0:8:8,0:8:274:0:0:0,-2.40824,-24.9934 dDocent_Contig_8201 17 . C T 335.298 . AB=0.0941176;ABP=124.638;AC=0;AF=0;AN=6;AO=8;CIGAR=2X6M1X3M;DP=101;DPB=101;DPRA=0;EPP=20.3821;EPPR=144.156;GTI=0;LEN=1;MEANALT=4;MQM=60;MQMR=60;NS=3;NUMALT=5;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=311;QR=2543;RO=65;RPL=0;RPP=20.3821;RPPR=144.156;RPR=8;RUN=1;SAF=8;SAP=20.3821;SAR=0;SRF=65;SRP=144.156;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|0:43:23,7,5,3,4,0:23:896:7,5,3,4,0:275,200,123,141,0:-15.3663,0,-71.5317,-5.81121,-57.1623,-77.9475,-12.1339,-63.4848,-69.2984,-84.872,-10.8238,-62.1684,-67.9816,-74.3039,-83.2534,-22.29,-73.6389,-79.4526,-85.7751,-84.4575,-95.9289 0|0:42:32,1,3,6,0,0:32:1257:1,3,6,0,0:40,111,244,0,0:-10.5116,-16.9031,-119.987,-11.0752,-111.21,-113.548,0,-100.159,-94.3227,-101.594,-20.1446,-120.288,-114.451,-103.401,-123.529,-20.1446,-120.288,-114.451,-103.401,-123.529,-123.529 0|0:16:10,0,0,1,0,5:10:390:0,0,1,0,5:0,0,31,0,196:-13.1748,-16.1851,-48.2499,-16.1851,-48.2499,-48.2499,-13.7102,-45.7664,-45.7664,-45.4654,-16.1851,-48.2499,-48.2499,-45.7664,-48.2499,0,-32.1299,-32.1299,-29.6487,-32.1299,-30.6248 dDocent_Contig_8202 65 . G A 39.8495 . AB=0.142857;ABP=41.7866;AC=1;AF=0.166667;AN=6;AO=5;CIGAR=1X1M1X2M1X3M1X;DP=44;DPB=44;DPRA=7.77778;EPP=13.8677;EPPR=87.6977;GTI=0;LEN=1;MEANALT=1;MQM=55.2;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=0.8;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=178;QR=1420;RO=39;RPL=5;RPP=13.8677;RPPR=87.6977;RPR=0;RUN=1;SAF=5;SAP=13.8677;SAR=0;SRF=39;SRP=87.6977;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|1:35:30,5:30:1102:5:178:-5.50758,0,-88.9536 0|0:6:6,0:6:216:0:0:0,-1.80618,-19.7903 0|0:3:3,0:3:102:0:0:0,-0.90309,-9.5169 dDocent_Contig_8204 8 . C T 1154.21 . AB=0.178571;ABP=329.662;AC=2;AF=0.333333;AN=6;AO=75;CIGAR=1X;DP=554;DPB=554;DPRA=0;EPP=165.871;EPPR=991.03;GTI=0;LEN=1;MEANALT=2.66667;MQM=58.4;MQMR=58.4374;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=0.995604;PAO=0;PQA=0;PQR=0;PRO=0;QA=2900;QR=17470;RO=455;RPL=0;RPP=165.871;RPPR=991.03;RPR=75;RUN=1;SAF=75;SAP=165.871;SAR=0;SRF=455;SRP=991.03;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:303:236,58:236:9077:58:2248:-112.79,0,-723.44 0/1:61:52,7:52:1999:7:266:-6.15391,0,-161.285 0/0:190:167,10:167:6394:10:386:0,-19.8546,-538.992 dDocent_Contig_8205 8 . C T 1117.96 . AB=0.0833333;ABP=57.2971;AC=2;AF=0.333333;AN=6;AO=3;CIGAR=1X2M1X;DP=68;DPB=68;DPRA=36;EPP=9.52472;EPPR=52.9542;GTI=0;LEN=1;MEANALT=2;MQM=37;MQMR=60;NS=3;NUMALT=2;ODDS=0;PAIRED=0;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=120;QR=892;RO=23;RPL=0;RPP=9.52472;RPPR=52.9542;RPR=3;RUN=1;SAF=3;SAP=9.52472;SAR=0;SRF=23;SRP=52.9542;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|0:36:13,3,20:13:499:3,20:120,804:-58.5395,-54.1324,-94.1879,0,-32.6736,-34.9706 1|1:1:0,0,0:0:0:0,0:0,0:0,0,0,0,0,0 0|0:31:10,0,21:10:393:0,21:0,844:-56.555,-59.5653,-91.9058,0,-32.7184,-26.3968 dDocent_Contig_8206 35 . A T 76.9202 . AB=0.25;ABP=11.6962;AC=1;AF=0.25;AN=4;AO=4;CIGAR=1X;DP=32;DPB=32;DPRA=1;EPP=11.6962;EPPR=63.8115;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=2;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=157;QR=1104;RO=28;RPL=0;RPP=11.6962;RPPR=63.8115;RPR=4;RUN=1;SAF=4;SAP=11.6962;SAR=0;SRF=28;SRP=63.8115;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:16:16,0:16:644:0:0:0,-4.81648,-58.2942 ./.:.:.:.:.:.:.:. 0/1:16:12,4:12:460:4:157:-9.69202,0,-36.9265 dDocent_Contig_8208 34 . A G 94.6745 . AB=0.162162;ABP=39.6906;AC=1;AF=0.166667;AN=6;AO=6;CIGAR=1X;DP=146;DPB=146;DPRA=0.678899;EPP=16.0391;EPPR=307.016;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=59.7;NS=3;NUMALT=1;ODDS=1.73472e-18;PAIRED=1;PAIREDR=0.785714;PAO=0;PQA=0;PQR=0;PRO=0;QA=245;QR=5524;RO=140;RPL=0;RPP=16.0391;RPPR=307.016;RPR=6;RUN=1;SAF=6;SAP=16.0391;SAR=0;SRF=140;SRP=307.016;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:80:80,0:80:3137:0:0:0,-24.0824,-282.389 0/0:29:29,0:29:1153:0:0:0,-8.72987,-104.029 0/1:37:31,6:31:1234:6:245:-11.2914,0,-100.137 dDocent_Contig_8209 54 . A G 984.683 . AB=0.641509;ABP=12.2288;AC=3;AF=0.5;AN=6;AO=34;CIGAR=1X;DP=53;DPB=53;DPRA=0;EPP=76.8404;EPPR=44.2683;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=1321;QR=756;RO=19;RPL=34;RPP=76.8404;RPPR=44.2683;RPR=0;RUN=1;SAF=34;SAP=76.8404;SAR=0;SRF=19;SRP=44.2683;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:30:10,20:10:401:20:775:-61.0441,0,-27.4188 0/1:12:5,7:5:195:7:270:-21.0496,0,-14.3089 0/1:11:4,7:4:160:7:276:-21.8975,0,-11.4725 dDocent_Contig_8210 213 . C T 58.2004 . AB=0.333333;ABP=5.18177;AC=1;AF=0.166667;AN=6;AO=4;CIGAR=1X;DP=25;DPB=25;DPRA=5.75;EPP=11.6962;EPPR=48.6112;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=149;QR=825;RO=21;RPL=4;RPP=11.6962;RPPR=48.6112;RPR=0;RUN=1;SAF=0;SAP=11.6962;SAR=4;SRF=0;SRP=48.6112;SRR=21;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:14:13,1:13:509:1:38:0,-0.417151,-42.3543 0/0:2:2,0:2:80:0:0:0,-0.60206,-7.59179 0/1:9:6,3:6:236:3:111:-7.64303,0,-18.9019 dDocent_Contig_8211 31 . G T 100.441 . AB=0.227273;ABP=17.2236;AC=2;AF=0.333333;AN=6;AO=5;CIGAR=1X2M1X;DP=37;DPB=37;DPRA=0.733333;EPP=13.8677;EPPR=72.4974;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=0;PAIREDR=0.875;PAO=0;PQA=0;PQR=0;PRO=0;QA=200;QR=1242;RO=32;RPL=0;RPP=13.8677;RPPR=72.4974;RPR=5;RUN=1;SAF=5;SAP=13.8677;SAR=0;SRF=32;SRP=72.4974;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|0:15:15,0:15:599:0:0:0,-4.51545,-54.2497 0|1:10:6,4:6:221:4:161:-11.8652,0,-17.2336 0|1:12:11,1:11:422:1:39:-0.284205,0,-34.7182 dDocent_Contig_8212 19 . C T 83.5277 . AB=0.266667;ABP=10.1038;AC=1;AF=0.166667;AN=6;AO=4;CIGAR=1X1M2X;DP=36;DPB=36;DPRA=1.42857;EPP=11.6962;EPPR=72.4974;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=159;QR=1247;RO=32;RPL=0;RPP=11.6962;RPPR=72.4974;RPR=4;RUN=1;SAF=4;SAP=11.6962;SAR=0;SRF=32;SRP=72.4974;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|0:14:14,0:14:542:0:0:0,-4.21442,-49.1225 0|0:7:7,0:7:275:0:0:0,-2.10721,-25.1191 0|1:15:11,4:11:430:4:159:-10.1767,0,-34.5388 dDocent_Contig_8213 24 . G C 85.5971 . AB=0.1;ABP=30.8051;AC=1;AF=0.166667;AN=6;AO=2;CIGAR=5M2D2X;DP=37;DPB=37;DPRA=5;EPP=7.35324;EPPR=68.1545;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=2;ODDS=3.46945e-18;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=82;QR=1176;RO=30;RPL=0;RPP=7.35324;RPPR=68.1545;RPR=2;RUN=1;SAF=2;SAP=7.35324;SAR=0;SRF=30;SRP=68.1545;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|1:20:18,2,0:18:715:2,0:82,0:-1.75908,0,-58.6602,-7.17762,-59.2623,-66.0317 0|0:4:4,0,0:4:156:0,0:0,0:0,-1.20412,-14.4171,-1.20412,-14.4171,-14.4171 0|0:13:8,0,4:8:305:0,4:0,155:-10.3074,-12.7156,-37.7242,0,-24.9898,-23.7857 dDocent_Contig_8214 25 . G A 113.272 . AB=0.105263;ABP=311.588;AC=2;AF=0.333333;AN=6;AO=24;CIGAR=1X;DP=248;DPB=248;DPRA=5.7;EPP=55.1256;EPPR=489.42;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=0.991071;PAO=0;PQA=0;PQR=0;PRO=0;QA=920;QR=8881;RO=224;RPL=0;RPP=55.1256;RPPR=489.42;RPR=24;RUN=1;SAF=24;SAP=55.1256;SAR=0;SRF=224;SRP=489.42;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:140:126,14:126:4990:14:530:-5.88588,0,-406.833 0/0:20:20,0:20:802:0:0:0,-6.0206,-72.4952 0/1:88:78,10:78:3089:10:390:-8.96415,0,-251.609 dDocent_Contig_8215 16 . G C 125.237 . AB=0.357143;ABP=5.49198;AC=1;AF=0.166667;AN=6;AO=5;CIGAR=1X;DP=76;DPB=76;DPRA=0.451613;EPP=13.8677;EPPR=157.185;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=202;QR=2849;RO=71;RPL=0;RPP=13.8677;RPPR=157.185;RPR=5;RUN=1;SAF=5;SAP=13.8677;SAR=0;SRF=71;SRP=157.185;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:25:25,0:25:1009:0:0:0,-7.52575,-91.1032 0/1:14:9,5:9:355:5:202:-14.3477,0,-28.0957 0/0:37:37,0:37:1485:0:0:0,-11.1381,-133.895 dDocent_Contig_8216 36 . C T 319.861 . AB=0.27451;ABP=25.534;AC=3;AF=0.5;AN=6;AO=14;CIGAR=1X;DP=51;DPB=51;DPRA=0;EPP=33.4109;EPPR=83.3548;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=561;QR=1479;RO=37;RPL=0;RPP=33.4109;RPPR=83.3548;RPR=14;RUN=1;SAF=14;SAP=33.4109;SAR=0;SRF=37;SRP=83.3548;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:14:10,4:10:402:4:157:-10.2928,0,-32.3239 0/1:26:17,9:17:679:9:363:-25.2075,0,-53.61 0/1:11:10,1:10:398:1:41:-0.783237,0,-32.8669 dDocent_Contig_8218 66 . T G 119.545 . AB=0.216216;ABP=28.8919;AC=2;AF=0.333333;AN=6;AO=9;CIGAR=1X;DP=62;DPB=62;DPRA=0;EPP=22.5536;EPPR=118.098;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=329;QR=2126;RO=53;RPL=9;RPP=22.5536;RPPR=118.098;RPR=0;RUN=1;SAF=9;SAP=22.5536;SAR=0;SRF=53;SRP=118.098;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:29:25,4:25:998:4:157:-5.77781,0,-81.3836 0/1:8:4,4:4:153:4:131:-9.69958,0,-11.7313 0/0:25:24,1:24:975:1:41:0,-3.43118,-83.9523 dDocent_Contig_8221 13 . G A 156.053 . AB=0.222222;ABP=27.1378;AC=2;AF=0.333333;AN=6;AO=8;CIGAR=1X;DP=39;DPB=39;DPRA=6;EPP=20.3821;EPPR=70.3259;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=314;QR=1231;RO=31;RPL=0;RPP=20.3821;RPPR=70.3259;RPR=8;RUN=1;SAF=8;SAP=20.3821;SAR=0;SRF=31;SRP=70.3259;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:23:21,2:21:834:2:81:-0.762044,0,-68.4445 0/1:13:7,6:7:274:6:233:-17.4207,0,-21.1135 0/0:3:3,0:3:123:0:0:0,-0.90309,-11.4648 dDocent_Contig_8224 95 . G A 55.2222 . AB=0;ABP=0;AC=4;AF=1;AN=4;AO=4;CIGAR=1X2M1X;DP=4;DPB=4;DPRA=0;EPP=11.6962;EPPR=0;GTI=0;LEN=1;MEANALT=1;MQM=15.5;MQMR=0;NS=2;NUMALT=1;ODDS=0;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=145;QR=0;RO=0;RPL=4;RPP=11.6962;RPPR=0;RPR=0;RUN=1;SAF=0;SAP=11.6962;SAR=4;SRF=0;SRP=0;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 1|1:3:0,3:0:0:3:109:-1.67914,-0.90309,0 1|1:1:0,1:0:0:1:36:-3.53612,-0.30103,0 .:.:.:.:.:.:.:. dDocent_Contig_8225 10 . C T 189.498 . AB=0.1625;ABP=82.1605;AC=3;AF=0.5;AN=6;AO=13;CIGAR=1X;DP=80;DPB=80;DPRA=0;EPP=31.2394;EPPR=131.646;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=59.1343;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=0.955224;PAO=0;PQA=0;PQR=0;PRO=0;QA=515;QR=2655;RO=67;RPL=0;RPP=31.2394;RPPR=148.499;RPR=13;RUN=1;SAF=13;SAP=31.2394;SAR=0;SRF=65;SRP=131.646;SRR=2;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:28:25,3:25:968:3:122:-2.94365,0,-77.7773 0/1:30:22,8:22:885:8:313:-19.5,0,-70.9277 0/1:22:20,2:20:802:2:80:-0.968915,0,-65.8732 dDocent_Contig_8226 111 . G C 242.811 . AB=0.184466;ABP=92.0828;AC=2;AF=0.333333;AN=6;AO=28;CIGAR=1X;DP=266;DPB=266;DPRA=0;EPP=63.8115;EPPR=519.821;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=948;QR=7932;RO=238;RPL=0;RPP=63.8115;RPPR=519.821;RPR=28;RUN=1;SAF=0;SAP=63.8115;SAR=28;SRF=0;SRP=519.821;SRR=238;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:163:154,9:154:5129:9:302:0,-21.5615,-434.276 0/1:20:17,3:17:562:3:105:-3.77556,0,-44.873 0/1:83:67,16:67:2241:16:541:-24.026,0,-176.969 dDocent_Contig_8228 10 . C G 236.499 . AB=0.305556;ABP=14.8328;AC=3;AF=0.5;AN=6;AO=11;CIGAR=1X;DP=36;DPB=36;DPRA=0;EPP=26.8965;EPPR=57.2971;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=432;QR=936;RO=25;RPL=0;RPP=26.8965;RPPR=57.2971;RPR=11;RUN=1;SAF=11;SAP=26.8965;SAR=0;SRF=25;SRP=57.2971;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:19:13,6:13:483:6:241:-16.3467,0,-38.0762 0/1:6:3,3:3:123:3:110:-8.45106,0,-9.65861 0/1:11:9,2:9:330:2:81:-4.3744,0,-26.7228 dDocent_Contig_8229 7 . T G 1236.3 . AB=0.0769231;ABP=184.913;AC=0;AF=0;AN=6;AO=9;CIGAR=2X2M1X;DP=142;DPB=142;DPRA=0;EPP=22.5536;EPPR=161.528;GTI=0;LEN=1;MEANALT=3;MQM=53;MQMR=60;NS=3;NUMALT=3;ODDS=0;PAIRED=0;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=304;QR=2799;RO=73;RPL=0;RPP=22.5536;RPPR=161.528;RPR=9;RUN=1;SAF=9;SAP=22.5536;SAR=0;SRF=73;SRP=161.528;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|0:61:27,21,7,6:27:1049:21,7,6:815,230,232:-58.1561,0,-79.9034,-47.7482,-67.6882,-131.844,-47.4696,-67.4119,-115.14,-131.873 0|0:56:36,14,2,4:36:1371:14,2,4:542,74,155:-33.1131,0,-108.246,-37.9134,-106.423,-149.768,-31.3801,-99.8904,-137.801,-142.634 0|0:25:10,13,0,2:10:379:13,0,2:502,0,78:-37.8839,0,-27.1551,-40.8942,-31.0685,-71.966,-34.5687,-24.7422,-65.6404,-65.0384 dDocent_Contig_8230 10 . C T 2456.08 . AB=0.480226;ABP=3.61144;AC=3;AF=0.5;AN=6;AO=85;CIGAR=1X;DP=177;DPB=177;DPRA=0;EPP=187.585;EPPR=202.786;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=0.952941;PAIREDR=0.967391;PAO=0;PQA=0;PQR=0;PRO=0;QA=3373;QR=3681;RO=92;RPL=0;RPP=187.585;RPPR=202.786;RPR=85;RUN=1;SAF=85;SAP=187.585;SAR=0;SRF=92;SRP=202.786;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:68:39,29:39:1583:29:1157:-83.9405,0,-122.229 0/1:58:33,25:33:1296:25:975:-70.5842,0,-99.4503 0/1:51:20,31:20:802:31:1241:-96.6061,0,-57.1452 dDocent_Contig_8232 111 . A G 186.65 . AB=0.3125;ABP=12.7819;AC=2;AF=0.333333;AN=6;AO=10;CIGAR=1X;DP=44;DPB=44;DPRA=1.33333;EPP=24.725;EPPR=76.8404;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=346;QR=1157;RO=34;RPL=0;RPP=24.725;RPPR=76.8404;RPR=10;RUN=1;SAF=0;SAP=24.725;SAR=10;SRF=0;SRP=76.8404;SRR=34;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:25:18,7:18:606:7:242:-14.592,0,-47.3317 0/1:7:4,3:4:140:3:104:-7.59588,0,-10.8377 0/0:12:12,0:12:411:0:0:0,-3.61236,-37.3186 dDocent_Contig_8233 79 . T C 1087.46 . AB=0.423423;ABP=8.66395;AC=3;AF=0.5;AN=6;AO=47;CIGAR=1X;DP=111;DPB=111;DPRA=0;EPP=105.07;EPPR=141.985;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=1618;QR=2191;RO=64;RPL=47;RPP=105.07;RPPR=141.985;RPR=0;RUN=1;SAF=47;SAP=105.07;SAR=0;SRF=64;SRP=141.985;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:21:13,8:13:443:8:286:-19.7639,0,-33.8748 0/1:71:49,22:49:1678:22:743:-45.8044,0,-129.934 0/1:19:2,17:2:70:17:589:-47.6167,0,-0.927826 dDocent_Contig_8234 18 . T A 1155.01 . AB=0.42;ABP=8.56927;AC=3;AF=0.5;AN=6;AO=42;CIGAR=1X;DP=100;DPB=100;DPRA=0;EPP=94.2121;EPPR=128.956;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=1668;QR=2294;RO=58;RPL=0;RPP=94.2121;RPPR=128.956;RPR=42;RUN=1;SAF=42;SAP=94.2121;SAR=0;SRF=58;SRP=128.956;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:62:37,25:37:1448:25:1000:-71.6335,0,-111.896 0/1:8:5,3:5:192:3:113:-8.12868,0,-15.2393 0/1:30:16,14:16:654:14:555:-41.2618,0,-50.1611 dDocent_Contig_8235 40 . G A 82.5493 . AB=0.185185;ABP=26.2531;AC=2;AF=0.5;AN=4;AO=5;CIGAR=1X;DP=27;DPB=27;DPRA=0;EPP=13.8677;EPPR=50.7827;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=2;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=204;QR=862;RO=22;RPL=0;RPP=13.8677;RPPR=50.7827;RPR=5;RUN=1;SAF=5;SAP=13.8677;SAR=0;SRF=22;SRP=50.7827;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:11:10,1:10:400:1:41:-0.783237,0,-33.0486 0/1:16:12,4:12:462:4:163:-10.2419,0,-37.1057 ./.:.:.:.:.:.:.:. dDocent_Contig_8236 9 . T A 5744.08 . AB=0.0507812;ABP=1797.87;AC=6;AF=0.999999;AN=6;AO=52;CIGAR=2M1X3M2X3M1D9M;DP=1024;DPB=977.619;DPRA=0;EPP=115.927;EPPR=35.5824;GTI=0;LEN=1;MEANALT=97;MQM=52.5962;MQMR=60;NS=3;NUMALT=3;ODDS=4.44089e-16;PAIRED=0;PAIREDR=1;PAO=17.75;PQA=699.75;PQR=699.75;PRO=17.75;QA=2050;QR=593;RO=15;RPL=0;RPP=115.927;RPPR=35.5824;RPR=52;RUN=1;SAF=52;SAP=115.927;SAR=0;SRF=15;SRP=35.5824;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 1|1:326:10,54,18,16:10:396:54,18,16:1850,610,636:-158.168,-19.4399,-35.7803,-113.866,-4.72447,-141.043,-109.142,0,-94.4263,-136.922 1|1:386:0,41,50,11:0:0:41,50,11:1559,1859,426:-273.318,-147.911,-135.569,-125.407,0,-110.356,-239.172,-113.766,-91.2614,-235.861 1|1:312:5,21,28,25:5:197:21,28,25:775,1057,988:-148.445,-88.8701,-98.7571,-64.3937,-19.5217,-72.1735,-69.3488,-24.4767,0,-78.0317 dDocent_Contig_8237 41 . G A 33.6536 . AB=0.157895;ABP=22.325;AC=2;AF=0.333333;AN=6;AO=3;CIGAR=2X;DP=38;DPB=38;DPRA=0.5;EPP=9.52472;EPPR=79.0118;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=1.73472e-18;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=119;QR=1402;RO=35;RPL=0;RPP=9.52472;RPPR=79.0118;RPR=3;RUN=1;SAF=3;SAP=9.52472;SAR=0;SRF=35;SRP=79.0118;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|0:19:19,0:19:756:0:0:0,-5.71957,-68.364 0|1:11:10,1:10:403:1:39:-0.585235,0,-33.3193 0|1:8:6,2:6:243:2:80:-5.18355,0,-19.8397 dDocent_Contig_8238 7 . T C 34.7078 . AB=0.129032;ABP=40.0654;AC=1;AF=0.166667;AN=6;AO=4;CIGAR=1X;DP=63;DPB=63;DPRA=1.9375;EPP=11.6962;EPPR=84.3117;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=56.0678;NS=3;NUMALT=1;ODDS=0;PAIRED=0;PAIREDR=0.728814;PAO=0;PQA=0;PQR=0;PRO=0;QA=155;QR=2204;RO=59;RPL=0;RPP=11.6962;RPPR=131.127;RPR=4;RUN=1;SAF=4;SAP=11.6962;SAR=0;SRF=53;SRP=84.3117;SRR=6;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:31:27,4:27:1010:4:155:-4.99351,0,-79.853 0/0:15:15,0:15:564:0:0:0,-4.51545,-51.1001 0/0:17:17,0:17:630:0:0:0,-5.11751,-55.6292 dDocent_Contig_8239 107 . N T 384.808 . AB=0;ABP=0;AC=6;AF=1;AN=6;AO=12;CIGAR=1X;DP=12;DPB=12;DPRA=0;EPP=29.068;EPPR=0;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=0;NS=3;NUMALT=1;ODDS=1.69407e-21;PAIRED=1;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=411;QR=0;RO=0;RPL=0;RPP=29.068;RPPR=0;RPR=12;RUN=1;SAF=0;SAP=29.068;SAR=12;SRF=0;SRP=0;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 1/1:6:0,6:0:0:6:204:-18.6937,-1.80618,0 1/1:1:0,1:0:0:1:34:-3.39891,-0.30103,0 1/1:5:0,5:0:0:5:173:-15.9102,-1.50515,0 dDocent_Contig_8240 12 . G A 63.3291 . AB=0.142857;ABP=41.7866;AC=2;AF=0.333333;AN=6;AO=5;CIGAR=1X;DP=47;DPB=47;DPRA=1.45833;EPP=13.8677;EPPR=94.2121;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=1.73472e-18;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=203;QR=1675;RO=42;RPL=0;RPP=13.8677;RPPR=94.2121;RPR=5;RUN=1;SAF=5;SAP=13.8677;SAR=0;SRF=42;SRP=94.2121;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:24:22,2:22:882:2:80:-0.366855,0,-72.4603 0/1:11:8,3:8:307:3:123:-8.15346,0,-24.6753 0/0:12:12,0:12:486:0:0:0,-3.61236,-44.0916 dDocent_Contig_8242 58 . A T 150.473 . AB=0.214286;ABP=32.7905;AC=3;AF=0.5;AN=6;AO=9;CIGAR=1X;DP=42;DPB=42;DPRA=0;EPP=22.5536;EPPR=74.6689;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=343;QR=1242;RO=33;RPL=9;RPP=22.5536;RPPR=74.6689;RPR=0;RUN=1;SAF=9;SAP=22.5536;SAR=0;SRF=33;SRP=74.6689;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:17:14,3:14:500:3:117:-5.79287,0,-40.2083 0/1:10:9,1:9:357:1:38:-0.786969,0,-29.4815 0/1:15:10,5:10:385:5:188:-12.7685,0,-30.4914 dDocent_Contig_8243 7 . T A 1804.27 . AB=0.450331;ABP=6.24594;AC=3;AF=0.5;AN=6;AO=68;CIGAR=1X;DP=151;DPB=151;DPRA=0;EPP=150.67;EPPR=178.9;GTI=0;LEN=1;MEANALT=1.33333;MQM=59.1471;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=0.529412;PAIREDR=0.91358;PAO=0;PQA=0;PQR=0;PRO=0;QA=2560;QR=3092;RO=81;RPL=0;RPP=150.67;RPPR=178.9;RPR=68;RUN=1;SAF=68;SAP=150.67;SAR=0;SRF=81;SRP=178.9;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:75:45,30:45:1724:30:1118:-78.343,0,-132.839 0/1:20:3,17:3:115:17:633:-51.2828,0,-4.70429 0/1:56:33,21:33:1253:21:809:-56.3238,0,-96.4188 dDocent_Contig_8244 47 . C A 101.518 . AB=0.363636;ABP=4.78696;AC=1;AF=0.166667;AN=6;AO=4;CIGAR=1X;DP=27;DPB=27;DPRA=1.375;EPP=11.6962;EPPR=48.6112;GTI=0;LEN=1;MEANALT=2;MQM=59;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=0;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=162;QR=833;RO=21;RPL=4;RPP=11.6962;RPPR=48.6112;RPR=0;RUN=1;SAF=4;SAP=11.6962;SAR=0;SRF=21;SRP=48.6112;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:15:15,0:15:592:0:0:0,-4.51545,-53.6087 0/0:1:0,0:0:0:0:0:0,0,0 0/1:11:6,4:6:241:4:162:-11.5487,0,-18.6557 dDocent_Contig_8245 176 . G C 503.914 . AB=0.435897;ABP=4.40227;AC=4;AF=0.666667;AN=6;AO=18;CIGAR=1X3M1X;DP=40;DPB=40;DPRA=0;EPP=42.0968;EPPR=50.7827;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=717;QR=863;RO=22;RPL=18;RPP=42.0968;RPPR=50.7827;RPR=0;RUN=1;SAF=0;SAP=42.0968;SAR=18;SRF=0;SRP=50.7827;SRR=22;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|1:30:17,13:17:664:13:519:-38.0272,0,-51.0617 1|1:1:0,1:0:0:1:40:-3.99568,-0.30103,0 0|1:9:5,4:5:199:4:158:-11.8907,0,-15.5795 dDocent_Contig_8246 22 . A C 319.611 . AB=0.103448;ABP=42.621;AC=3;AF=0.5;AN=6;AO=3;CIGAR=1X5M;DP=49;DPB=49;DPRA=0;EPP=9.52472;EPPR=61.6401;GTI=0;LEN=1;MEANALT=2.5;MQM=60;MQMR=60;NS=3;NUMALT=3;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=117;QR=1061;RO=27;RPL=0;RPP=9.52472;RPPR=61.6401;RPR=3;RUN=1;SAF=3;SAP=9.52472;SAR=0;SRF=27;SRP=61.6401;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|1:21:14,5,0,2:14:544:5,0,2:196,0,76:-11.8742,0,-43.201,-16.0886,-44.7061,-60.7877,-9.85885,-38.4743,-54.5556,-53.9536 0|1:8:4,2,0,1:4:159:2,0,1:77,0,41:-5.1608,0,-12.5737,-6.36492,-13.1757,-19.4908,-2.95327,-9.78067,-16.1,-15.7989 0|1:20:9,4,7,0:9:358:4,7,0:158,281,0:-20.4487,-10.1896,-38.4604,0,-16.5095,-27.3722,-23.158,-39.6645,-29.4794,-52.6345 dDocent_Contig_8247 7 . T A 402.711 . AB=0.181818;ABP=196.469;AC=2;AF=0.333333;AN=6;AO=43;CIGAR=1X;DP=301;DPB=301;DPRA=0;EPP=96.3836;EPPR=499.769;GTI=0;LEN=1;MEANALT=1.33333;MQM=35.6047;MQMR=50.6758;NS=3;NUMALT=1;ODDS=0;PAIRED=0.0930233;PAIREDR=0.125;PAO=0;PQA=0;PQR=0;PRO=0;QA=1623;QR=9759;RO=256;RPL=0;RPP=96.3836;RPPR=558.907;RPR=43;RUN=1;SAF=43;SAP=96.3836;SAR=0;SRF=249;SRP=499.769;SRR=7;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:143:120,21:120:4568:21:791:-20.7466,0,-352.364 0/1:77:58,19:58:2218:19:719:-23.0473,0,-170.895 0/0:81:78,3:78:2973:3:113:0,-13.8889,-248.734 dDocent_Contig_8249 9 . T G 55.2868 . AB=0.3;ABP=6.48466;AC=1;AF=0.25;AN=4;AO=3;CIGAR=1X;DP=34;DPB=34;DPRA=0.416667;EPP=9.52472;EPPR=70.3259;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=2;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=113;QR=1190;RO=31;RPL=0;RPP=9.52472;RPPR=70.3259;RPR=3;RUN=1;SAF=3;SAP=9.52472;SAR=0;SRF=31;SRP=70.3259;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:24:24,0:24:917:0:0:0,-7.22472,-82.8466 ./.:.:.:.:.:.:.:. 0/1:10:7,3:7:273:3:113:-7.52867,0,-21.9277 dDocent_Contig_8250 8 . C T 235.685 . AB=0.213115;ABP=46.6177;AC=2;AF=0.333333;AN=6;AO=13;CIGAR=1X;DP=70;DPB=70;DPRA=3.38889;EPP=31.2394;EPPR=126.784;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=3.46945e-18;PAIRED=0.846154;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=497;QR=2190;RO=57;RPL=0;RPP=31.2394;RPPR=126.784;RPR=13;RUN=1;SAF=13;SAP=31.2394;SAR=0;SRF=57;SRP=126.784;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:52:44,8:44:1692:8:311:-12.7008,0,-136.886 0/0:9:9,0:9:348:0:0:0,-2.70927,-31.6803 0/1:9:4,5:4:150:5:186:-14.3906,0,-11.1561 dDocent_Contig_8251 62 . C T 101.04 . AB=0.177778;ABP=43.5927;AC=2;AF=0.333333;AN=6;AO=8;CIGAR=1X;DP=46;DPB=46;DPRA=22.5;EPP=20.3821;EPPR=85.5263;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=3.46945e-18;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=294;QR=1467;RO=38;RPL=8;RPP=20.3821;RPPR=85.5263;RPR=0;RUN=1;SAF=8;SAP=20.3821;SAR=0;SRF=38;SRP=85.5263;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:29:25,4:25:972:4:150:-5.13083,0,-79.0478 0/0:1:1,0:1:38:0:0:0,-0.30103,-3.79727 0/1:16:12,4:12:457:4:144:-8.49517,0,-36.6621 dDocent_Contig_8252 107 . N T 311.141 . AB=0;ABP=0;AC=4;AF=1;AN=4;AO=10;CIGAR=1X;DP=10;DPB=10;DPRA=0;EPP=24.725;EPPR=0;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=0;NS=2;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=335;QR=0;RO=0;RPL=0;RPP=24.725;RPPR=0;RPR=10;RUN=1;SAF=0;SAP=24.725;SAR=10;SRF=0;SRP=0;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 1/1:6:0,6:0:0:6:198:-18.1447,-1.80618,0 ./.:.:.:.:.:.:.:. 1/1:4:0,4:0:0:4:137:-12.6682,-1.20412,0 dDocent_Contig_8256 27 . T C 123.017 . AB=0.25;ABP=7.35324;AC=1;AF=0.166667;AN=6;AO=2;CIGAR=3M2X1M1X1M1X4M;DP=33;DPB=32.8462;DPRA=0.8;EPP=7.35324;EPPR=35.5824;GTI=0;LEN=1;MEANALT=1;MQM=28;MQMR=60;NS=3;NUMALT=5;ODDS=0;PAIRED=0;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=56;QR=585;RO=15;RPL=0;RPP=7.35324;RPPR=35.5824;RPR=2;RUN=1;SAF=2;SAP=7.35324;SAR=0;SRF=15;SRP=35.5824;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|1:8:6,0,2,0,0,0:6:237:0,2,0,0,0:0,56,0,0,0:-2.34046,-4.14664,-23.758,0,-19.8975,-19.2954,-4.14664,-23.758,-19.8975,-23.758,-4.14664,-23.758,-19.8975,-23.758,-23.758,-4.14664,-23.758,-19.8975,-23.758,-23.758,-23.758 0|0:15:1,6,0,2,2,4:1:36:6,0,2,2,4:48,0,80,79,137:-13.422,-12.7512,-13.8879,-13.723,-15.6941,-16.671,-10.3741,-12.3759,-13.324,-12.722,-7.6866,-9.67082,-10.6384,-7.2868,-10.0364,-3.09616,-5.10889,-6.0527,-2.69569,0,-4.84858 0|0:10:8,0,0,0,0,0:8:312:0,0,0,0,0:0,0,0,0,0:0,-2.40824,-28.1819,-2.40824,-28.1819,-28.1819,-2.40824,-28.1819,-28.1819,-28.1819,-2.40824,-28.1819,-28.1819,-28.1819,-28.1819,-2.40824,-28.1819,-28.1819,-28.1819,-28.1819,-28.1819 dDocent_Contig_8257 117 . A G 389.849 . AB=0.0555556;ABP=188.309;AC=2;AF=0.333333;AN=6;AO=6;CIGAR=1X1M;DP=116;DPB=116;DPRA=0;EPP=16.0391;EPPR=83.3548;GTI=0;LEN=1;MEANALT=3;MQM=15.1667;MQMR=47.2162;NS=3;NUMALT=3;ODDS=0;PAIRED=0.166667;PAIREDR=0.702703;PAO=0;PQA=0;PQR=0;PRO=0;QA=77;QR=1249;RO=37;RPL=0;RPP=16.0391;RPPR=83.3548;RPR=6;RUN=1;SAF=0;SAP=16.0391;SAR=6;SRF=0;SRP=83.3548;SRR=37;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|1:76:25,20,26,5:25:841:20,26,5:646,908,56:-23.9998,0,-49.8125,-15.4245,-39.7583,-63.3983,-28.9826,-53.2933,-68.6924,-83.2765 1|0:8:0,3,5,0:0:0:3,5,0:97,174,0:-7.42999,-1.9875,-1.08441,-5.61649,0,-4.11134,-7.42999,-1.9875,-5.61649,-7.42999 0|0:32:12,4,15,1:12:408:4,15,1:125,525,21:-12.1447,-14.9143,-42.3437,0,-27.9162,-24.2078,-14.435,-42.2295,-27.4071,-42.7696 dDocent_Contig_8259 89 . C T 237.694 . AB=0.288889;ABP=20.4303;AC=1;AF=0.166667;AN=6;AO=14;CIGAR=1X;DP=68;DPB=68;DPRA=10.8333;EPP=33.4109;EPPR=120.27;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=463;QR=1827;RO=54;RPL=14;RPP=33.4109;RPPR=120.27;RPR=0;RUN=1;SAF=14;SAP=33.4109;SAR=0;SRF=54;SRP=120.27;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:45:32,13:32:1101:13:428:-25.2921,0,-85.8512 0/0:3:3,0:3:105:0:0:0,-0.90309,-9.79616 0/0:20:19,1:19:621:1:35:0,-2.52197,-52.6984 dDocent_Contig_8261 83 . T G 277.152 . AB=0.419355;ABP=4.76149;AC=1;AF=0.25;AN=4;AO=13;CIGAR=1X;DP=39;DPB=39;DPRA=3.875;EPP=31.2394;EPPR=59.4686;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=2;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=427;QR=902;RO=26;RPL=13;RPP=31.2394;RPPR=59.4686;RPR=0;RUN=1;SAF=13;SAP=31.2394;SAR=0;SRF=26;SRP=59.4686;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:31:18,13:18:630:13:427:-29.4141,0,-47.6957 ./.:.:.:.:.:.:.:. 0/0:8:8,0:8:272:0:0:0,-2.40824,-24.8117 dDocent_Contig_8262 7 . T G 38.8629 . AB=0.4;ABP=3.44459;AC=1;AF=0.166667;AN=6;AO=4;CIGAR=2X;DP=52;DPB=52;DPRA=0.630435;EPP=11.6962;EPPR=105.07;GTI=0;LEN=1;MEANALT=1.5;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=149;QR=1791;RO=47;RPL=0;RPP=11.6962;RPPR=105.07;RPR=4;RUN=1;SAF=4;SAP=11.6962;SAR=0;SRF=47;SRP=105.07;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|0:23:23,0:23:877:0:0:0,-6.92369,-79.2494 0|1:5:3,2:3:109:2:76:-5.70952,0,-8.66285 0|0:24:21,2:21:805:2:73:0,-0.367336,-65.8394 dDocent_Contig_8263 16 . A C 300.048 . AB=0.352941;ABP=9.39698;AC=2;AF=0.333333;AN=6;AO=12;CIGAR=1X;DP=35;DPB=35;DPRA=17;EPP=29.068;EPPR=50.7827;GTI=0;LEN=1;MEANALT=1.5;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=3.46945e-18;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=478;QR=881;RO=22;RPL=0;RPP=29.068;RPPR=50.7827;RPR=12;RUN=1;SAF=12;SAP=29.068;SAR=0;SRF=22;SRP=50.7827;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:24:14,9:14:555:9:357:-25.2571,0,-43.061 0/0:1:1,0:1:41:0:0:0,-0.30103,-4.09457 0/1:10:7,3:7:285:3:121:-8.2699,0,-23.0141 dDocent_Contig_8264 61 . C G 299.976 . AB=0.291667;ABP=21.1059;AC=2;AF=0.333333;AN=6;AO=20;CIGAR=1X;DP=136;DPB=136;DPRA=0;EPP=46.4397;EPPR=254.901;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=6.93889e-18;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=753;QR=4393;RO=116;RPL=20;RPP=46.4397;RPPR=254.901;RPR=0;RUN=1;SAF=20;SAP=46.4397;SAR=0;SRF=116;SRP=254.901;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:88:82,6:82:3147:6:228:0,-5.6064,-262.497 0/1:13:7,6:7:268:6:229:-17.0623,0,-20.5704 0/1:35:27,8:27:978:8:296:-16.4581,0,-77.7973 dDocent_Contig_8265 70 . T C 1064.41 . AB=0.5;ABP=3.0103;AC=3;AF=0.5;AN=6;AO=37;CIGAR=1X;DP=74;DPB=74;DPRA=0;EPP=83.3548;EPPR=83.3548;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=1480;QR=1421;RO=37;RPL=37;RPP=83.3548;RPPR=83.3548;RPR=0;RUN=1;SAF=37;SAP=83.3548;SAR=0;SRF=37;SRP=83.3548;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:56:25,31:25:964:31:1245:-95.4632,0,-70.1924 0/1:10:8,2:8:303:2:81:-4.67543,0,-24.6097 0/1:8:4,4:4:154:4:154:-11.8252,0,-11.8254 dDocent_Contig_8266 80 . T A 2232.38 . AB=0.645669;ABP=26.4177;AC=2;AF=0.5;AN=4;AO=82;CIGAR=1X1M2X;DP=127;DPB=127;DPRA=0;EPP=181.071;EPPR=100.727;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=2;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=2940;QR=1592;RO=45;RPL=82;RPP=181.071;RPPR=100.727;RPR=0;RUN=1;SAF=82;SAP=181.071;SAR=0;SRF=0;SRP=100.727;SRR=45;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|1:91:29,62:29:1040:62:2255:-175.807,0,-66.5163 .:.:.:.:.:.:.:. 0|1:36:16,20:16:552:20:685:-51.1297,0,-39.1655 dDocent_Contig_8268 17 . T C 4422.89 . AB=0.0890026;ABP=2871.41;AC=3;AF=0.5;AN=6;AO=174;CIGAR=1X3M;DP=1955;DPB=1955;DPRA=0;EPP=380.846;EPPR=2740.59;GTI=0;LEN=1;MEANALT=8.66667;MQM=44.5517;MQMR=57.7646;NS=3;NUMALT=2;ODDS=2.22045e-16;PAIRED=0.896552;PAIREDR=0.857565;PAO=0;PQA=0;PQR=0;PRO=0;QA=5912;QR=52826;RO=1355;RPL=0;RPP=380.846;RPPR=2945.36;RPR=174;RUN=1;SAF=174;SAP=380.846;SAR=0;SRF=1331;SRP=2740.59;SRR=24;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|1:1064:742,163,85:742:29002:163,85:6323,2842:-217.815,0,-2308.55,-223.168,-2139.61,-2555.2 0|1:332:239,61,12:239:9280:61,12:2388,415:-100.393,0,-733.402,-140.019,-719.444,-888.171 0|1:559:374,88,77:374:14544:88,77:3426,2655:-129.604,0,-1106.19,-33.6616,-924.149,-1143.16 dDocent_Contig_8269 56 . A G 156.643 . AB=0.428571;ABP=3.63072;AC=1;AF=0.166667;AN=6;AO=6;CIGAR=1X;DP=147;DPB=147;DPRA=0.210526;EPP=16.0391;EPPR=309.188;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=237;QR=5557;RO=141;RPL=6;RPP=16.0391;RPPR=309.188;RPR=0;RUN=1;SAF=6;SAP=16.0391;SAR=0;SRF=141;SRP=309.188;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:103:103,0:103:4076:0:0:0,-31.0061,-366.835 0/1:14:8,6:8:306:6:237:-17.4882,0,-23.6835 0/0:30:30,0:30:1175:0:0:0,-9.0309,-106.038 dDocent_Contig_8270 24 . T C 462.149 . AB=0.2;ABP=96.8179;AC=3;AF=0.5;AN=6;AO=24;CIGAR=1X;DP=120;DPB=120;DPRA=0;EPP=55.1256;EPPR=211.472;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=964;QR=3839;RO=96;RPL=0;RPP=55.1256;RPPR=211.472;RPR=24;RUN=1;SAF=24;SAP=55.1256;SAR=0;SRF=96;SRP=211.472;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:72:57,15:57:2267:15:602:-32.8426,0,-182.518 0/1:26:22,4:22:886:4:158:-6.77387,0,-72.2214 0/1:22:17,5:17:686:5:204:-12.1214,0,-55.4461 dDocent_Contig_8272 33 . C A 42.9831 . AB=0.131579;ABP=47.8112;AC=2;AF=0.5;AN=4;AO=5;CIGAR=1X;DP=38;DPB=38;DPRA=0;EPP=13.8677;EPPR=74.6689;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=2;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=199;QR=1321;RO=33;RPL=0;RPP=13.8677;RPPR=74.6689;RPR=5;RUN=1;SAF=5;SAP=13.8677;SAR=0;SRF=33;SRP=74.6689;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:22:20,2:20:801:2:80:-0.968915,0,-65.7832 ./.:.:.:.:.:.:.:. 0/1:16:13,3:13:520:3:119:-6.27853,0,-42.328 dDocent_Contig_8273 8 . C A 35.7337 . AB=0.108911;ABP=137.19;AC=3;AF=0.5;AN=6;AO=11;CIGAR=1X;DP=101;DPB=101;DPRA=0;EPP=26.8965;EPPR=198.443;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=424;QR=3442;RO=90;RPL=0;RPP=26.8965;RPPR=198.443;RPR=11;RUN=1;SAF=11;SAP=26.8965;SAR=0;SRF=90;SRP=198.443;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:64:58,6:58:2205:6:231:-1.89199,0,-179.401 0/1:3:2,1:2:78:1:37:-2.79474,0,-6.50038 0/1:34:30,4:30:1159:4:156:-4.18227,0,-94.3739 dDocent_Contig_8274 24 . A G 96.5772 . AB=0.230769;ABP=11.1951;AC=0;AF=0;AN=6;AO=3;CIGAR=4M1X2M2X;DP=127;DPB=135.667;DPRA=0.393939;EPP=9.52472;EPPR=222.329;GTI=0;LEN=1;MEANALT=3;MQM=12;MQMR=60;NS=3;NUMALT=3;ODDS=1.38778e-17;PAIRED=0;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=106;QR=4020;RO=101;RPL=0;RPP=9.52472;RPPR=222.329;RPR=3;RUN=1;SAF=3;SAP=9.52472;SAR=0;SRF=101;SRP=222.329;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|0:81:63,0,9,6:63:2500:0,9,6:0,340,238:-8.90138,-27.8663,-233.686,0,-205.83,-203.121,-11.4365,-217.245,-189.39,-215.439 0|0:13:7,3,2,0:7:280:3,2,0:106,77,0:-4.27845,-4.19295,-26.3599,0,-20.9447,-22.5953,-6.38566,-27.263,-23.1974,-29.5282 0|0:33:31,0,1,0:31:1240:0,1,0:0,41,0:0,-9.33193,-111.471,-5.9429,-108.087,-107.786,-9.33193,-111.471,-108.087,-111.471 dDocent_Contig_8275 28 . C T 827.77 . AB=0.0967742;ABP=46.79;AC=0;AF=0;AN=6;AO=3;CIGAR=2X1M1X1M2X4M;DP=92;DPB=92.2727;DPRA=0;EPP=9.52472;EPPR=83.3548;GTI=0;LEN=1;MEANALT=3;MQM=11;MQMR=60;NS=3;NUMALT=6;ODDS=0;PAIRED=0;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=33;QR=1440;RO=37;RPL=0;RPP=9.52472;RPPR=83.3548;RPR=3;RUN=1;SAF=0;SAP=9.52472;SAR=3;SRF=37;SRP=83.3548;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|0:36:14,0,4,0,5,0,11:14:549:0,4,0,5,0,11:0,158,0,65,0,416:-29.9509,-34.1654,-79.3448,-21.1872,-66.3782,-65.1741,-34.1654,-79.3448,-66.3782,-79.3448,-31.1807,-76.3369,-63.3749,-76.3369,-74.8317,-34.1654,-79.3448,-66.3782,-79.3448,-76.3369,-79.3448,0,-45.2289,-32.2562,-45.2289,-42.2388,-45.2289,-41.9176 0|0:25:9,0,2,0,0,3,10:9:344:0,2,0,0,3,10:0,73,0,0,119,382:-28.6467,-31.356,-59.5847,-25.3935,-53.6219,-53.0198,-31.356,-59.5847,-53.6219,-59.5847,-31.356,-59.5847,-53.6219,-59.5847,-59.5847,-21.5548,-49.786,-43.8231,-49.786,-49.786,-48.8829,0,-28.2382,-22.2757,-28.2382,-28.2382,-18.4365,-25.2279 0|0:31:14,3,0,3,0,0,11:14:547:3,0,3,0,0,11:119,0,33,0,0,413:-29.7022,-24.1377,-68.2422,-33.9166,-69.1452,-78.9137,-32.6675,-67.876,-77.6414,-76.7383,-33.9166,-69.1452,-78.9137,-77.6414,-78.9137,-33.9166,-69.1452,-78.9137,-77.6414,-78.9137,-78.9137,0,-35.3017,-45.0748,-43.8196,-45.0748,-45.0748,-41.7635 dDocent_Contig_8277 26 . T C 80.6323 . AB=0.113636;ABP=117.111;AC=2;AF=0.333333;AN=6;AO=19;CIGAR=1X;DP=253;DPB=253;DPRA=0;EPP=44.2683;EPPR=511.135;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=763;QR=9367;RO=234;RPL=0;RPP=44.2683;RPPR=511.135;RPR=19;RUN=1;SAF=19;SAP=44.2683;SAR=0;SRF=234;SRP=511.135;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:165:156,9:156:6229:9:365:0,-16.4549,-527.137 0/1:12:11,1:11:440:1:38:-0.184909,0,-36.3422 0/1:76:67,9:67:2698:9:360:-9.88493,0,-220.053 dDocent_Contig_8278 36 . C A 31.5286 . AB=0.222222;ABP=9.04217;AC=1;AF=0.166667;AN=6;AO=4;CIGAR=1X;DP=150;DPB=150;DPRA=0.342697;EPP=11.6962;EPPR=320.045;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=163;QR=5817;RO=146;RPL=0;RPP=11.6962;RPPR=320.045;RPR=4;RUN=1;SAF=4;SAP=11.6962;SAR=0;SRF=146;SRP=320.045;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:89:89,0:89:3549:0:0:0,-26.7917,-319.444 0/1:9:7,2:7:280:2:81:-4.97646,0,-22.8614 0/0:52:50,2:50:1988:2:82:0,-7.87388,-171.343 dDocent_Contig_8279 98 . N A 65.5375 . AB=0;ABP=0;AC=2;AF=1;AN=2;AO=2;CIGAR=2X;DP=2;DPB=2;DPRA=0;EPP=7.35324;EPPR=0;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=0;NS=1;NUMALT=1;ODDS=5.99146;PAIRED=1;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=69;QR=0;RO=0;RPL=2;RPP=7.35324;RPPR=0;RPR=0;RUN=1;SAF=2;SAP=7.35324;SAR=0;SRF=0;SRP=0;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL .:.:.:.:.:.:.:. .:.:.:.:.:.:.:. 1|1:2:0,2:0:0:2:69:-6.55266,-0.60206,0 dDocent_Contig_8280 11 . A T 107.001 . AB=0.1875;ABP=30.1537;AC=1;AF=0.166667;AN=6;AO=7;CIGAR=1X;DP=92;DPB=92;DPRA=3.33333;EPP=18.2106;EPPR=187.585;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=283;QR=3413;RO=85;RPL=0;RPP=18.2106;RPPR=187.585;RPR=7;RUN=1;SAF=7;SAP=18.2106;SAR=0;SRF=85;SRP=187.585;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:48:47,1:47:1903:1:41:0,-10.3549,-167.367 0/0:12:12,0:12:483:0:0:0,-3.61236,-43.821 0/1:32:26,6:26:1027:6:242:-12.524,0,-83.09 dDocent_Contig_8281 11 . A C 722.537 . AB=0.6;ABP=6.48466;AC=4;AF=0.666667;AN=6;AO=25;CIGAR=1X;DP=41;DPB=41;DPRA=0;EPP=57.2971;EPPR=37.7539;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=962;QR=641;RO=16;RPL=0;RPP=57.2971;RPPR=37.7539;RPR=25;RUN=1;SAF=25;SAP=57.2971;SAR=0;SRF=16;SRP=37.7539;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:33:10,23:10:401:23:880:-69.5596,0,-26.5154 1/1:1:0,1:0:0:1:41:-4.09457,-0.30103,0 0/1:7:6,1:6:240:1:41:-1.98736,0,-19.8673 dDocent_Contig_8283 14 . G A 276.234 . AB=0.147059;ABP=150.159;AC=2;AF=0.333333;AN=6;AO=32;CIGAR=1X;DP=336;DPB=336;DPRA=0;EPP=72.4974;EPPR=663.138;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=57.6184;NS=3;NUMALT=1;ODDS=1.38778e-17;PAIRED=1;PAIREDR=0.930921;PAO=0;PQA=0;PQR=0;PRO=0;QA=1279;QR=11975;RO=304;RPL=0;RPP=72.4974;RPPR=663.138;RPR=32;RUN=1;SAF=32;SAP=72.4974;SAR=0;SRF=304;SRP=663.138;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:200:188,12:188:7369:12:486:0,-16.1149,-610.062 0/1:28:22,6:22:851:6:239:-13.4551,0,-65.0881 0/1:108:94,14:94:3755:14:554:-17.6912,0,-291.957 dDocent_Contig_8284 27 . G C 414.376 . AB=0.0677966;ABP=98.7391;AC=0;AF=0;AN=6;AO=4;CIGAR=2M8D6M1X2M9I4M1D6M1X;DP=65;DPB=65.5806;DPRA=0;EPP=11.6962;EPPR=92.0407;GTI=0;LEN=1;MEANALT=2.5;MQM=17.5;MQMR=60;NS=3;NUMALT=3;ODDS=0;PAIRED=0;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=70;QR=1612;RO=41;RPL=0;RPP=11.6962;RPPR=92.0407;RPR=4;RUN=1;SAF=4;SAP=11.6962;SAR=0;SRF=41;SRP=92.0407;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|0:33:20,10,2,1:20:783:10,2,1:393,54,19:-26.4432,0,-61.5258,-28.7672,-60.8314,-92.5593,-31.3392,-63.405,-92.0283,-95.4347 0|0:6:4,2,0,0:4:159:2,0,0:79,0,0:-5.69145,0,-12.8862,-6.89557,-13.4882,-19.9883,-6.89557,-13.4882,-19.9883,-19.9883 0|0:26:17,6,0,3:17:670:6,0,3:240,0,51:-14.8257,0,-53.5324,-19.9432,-55.3386,-75.1192,-17.1406,-52.4876,-72.2596,-71.3566 dDocent_Contig_8285 69 . A T 39.6904 . AB=0.166667;ABP=20.3821;AC=1;AF=0.166667;AN=6;AO=3;CIGAR=1X;DP=31;DPB=31;DPRA=2.76923;EPP=9.52472;EPPR=63.8115;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=1.73472e-18;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=117;QR=1051;RO=28;RPL=3;RPP=9.52472;RPPR=63.8115;RPR=0;RUN=1;SAF=3;SAP=9.52472;SAR=0;SRF=28;SRP=63.8115;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:18:15,3:15:560:3:117:-5.49184,0,-45.3169 0/0:7:7,0:7:272:0:0:0,-2.10721,-24.845 0/0:6:6,0:6:219:0:0:0,-1.80618,-20.0617 dDocent_Contig_8286 9 . T C 281.377 . AB=0.302326;ABP=17.6046;AC=3;AF=0.5;AN=6;AO=13;CIGAR=1X3M;DP=43;DPB=43;DPRA=0;EPP=31.2394;EPPR=57.2971;GTI=0;LEN=1;MEANALT=2.33333;MQM=57.9231;MQMR=60;NS=3;NUMALT=2;ODDS=0;PAIRED=0;PAIREDR=0.72;PAO=0;PQA=0;PQR=0;PRO=0;QA=503;QR=978;RO=25;RPL=0;RPP=31.2394;RPPR=57.2971;RPR=13;RUN=1;SAF=13;SAP=31.2394;SAR=0;SRF=25;SRP=57.2971;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|1:26:16,1,8:16:618:1,8:34,308:-20.5077,-22.5699,-73.03,0,-48.0498,-48.3972 0|1:5:2,0,2:2:80:0,2:0,78:-5.64825,-6.25031,-12.8467,0,-6.59677,-5.99471 0|1:12:7,2,3:7:280:2,3:80,117:-7.50448,-3.01756,-25.488,0,-16.4754,-22.1625 dDocent_Contig_8288 15 . A G 82.1876 . AB=0.307692;ABP=7.18621;AC=1;AF=0.166667;AN=6;AO=4;CIGAR=1X;DP=30;DPB=30;DPRA=1.52941;EPP=11.6962;EPPR=59.4686;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=0;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=151;QR=1047;RO=26;RPL=0;RPP=11.6962;RPPR=59.4686;RPR=4;RUN=1;SAF=4;SAP=11.6962;SAR=0;SRF=26;SRP=59.4686;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:14:14,0:14:560:0:0:0,-4.21442,-50.7404 0/1:13:9,4:9:367:4:151:-10.0425,0,-29.4819 0/0:3:3,0:3:120:0:0:0,-0.90309,-11.1873 dDocent_Contig_8289 32 . G A 79.1732 . AB=0.166667;ABP=31.9633;AC=1;AF=0.166667;AN=6;AO=5;CIGAR=1X;DP=55;DPB=55;DPRA=2.4;EPP=13.8677;EPPR=111.584;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=201;QR=1986;RO=50;RPL=0;RPP=13.8677;RPPR=111.584;RPR=5;RUN=1;SAF=5;SAP=13.8677;SAR=0;SRF=50;SRP=111.584;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:30:25,5:25:997:5:201:-9.4402,0,-80.9924 0/0:15:15,0:15:607:0:0:0,-4.51545,-54.9681 0/0:10:10,0:10:382:0:0:0,-3.0103,-34.7268 dDocent_Contig_8290 22 . T C 235.857 . AB=0.533333;ABP=3.15506;AC=1;AF=0.25;AN=4;AO=8;CIGAR=1X;DP=22;DPB=22;DPRA=2.14286;EPP=20.3821;EPPR=33.4109;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=2;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=327;QR=568;RO=14;RPL=0;RPP=20.3821;RPPR=33.4109;RPR=8;RUN=1;SAF=8;SAP=20.3821;SAR=0;SRF=14;SRP=33.4109;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:15:7,8:7:282:8:327:-25.2847,0,-21.2371 ./.:.:.:.:.:.:.:. 0/0:7:7,0:7:286:0:0:0,-2.10721,-26.1148 dDocent_Contig_8291 29 . C T 97.2375 . AB=0.263158;ABP=12.2676;AC=2;AF=0.333333;AN=6;AO=5;CIGAR=1X;DP=25;DPB=25;DPRA=1.58333;EPP=13.8677;EPPR=46.4397;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=202;QR=798;RO=20;RPL=0;RPP=13.8677;RPPR=46.4397;RPR=5;RUN=1;SAF=5;SAP=13.8677;SAR=0;SRF=20;SRP=46.4397;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:13:11,2:11:435:2:79:-3.58424,0,-35.5873 0/0:6:6,0:6:241:0:0:0,-1.80618,-22.0658 0/1:6:3,3:3:122:3:123:-9.65861,0,-9.56631 dDocent_Contig_8292 56 . G A 34.5374 . AB=0.25;ABP=7.35324;AC=1;AF=0.166667;AN=6;AO=2;CIGAR=1X;DP=111;DPB=111;DPRA=0.15534;EPP=7.35324;EPPR=214.36;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=0.972477;PAO=0;PQA=0;PQR=0;PRO=0;QA=81;QR=4222;RO=109;RPL=2;RPP=7.35324;RPPR=239.701;RPR=0;RUN=1;SAF=2;SAP=7.35324;SAR=0;SRF=106;SRP=214.36;SRR=3;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:88:88,0:88:3413:0:0:0,-26.4906,-307.223 0/1:8:6,2:6:240:2:81:-5.27749,0,-19.5672 0/0:15:15,0:15:569:0:0:0,-4.51545,-51.541 dDocent_Contig_8293 81 . C T 44.054 . AB=0.153846;ABP=30.0702;AC=2;AF=0.5;AN=4;AO=4;CIGAR=1X;DP=26;DPB=26;DPRA=0;EPP=11.6962;EPPR=50.7827;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=2;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=154;QR=832;RO=22;RPL=4;RPP=11.6962;RPPR=50.7827;RPR=0;RUN=1;SAF=4;SAP=11.6962;SAR=0;SRF=22;SRP=50.7827;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:16:13,3:13:504:3:117:-6.0939,0,-40.8925 ./.:.:.:.:.:.:.:. 0/1:10:9,1:9:328:1:37:-0.687529,0,-26.8581 dDocent_Contig_8294 16 . T G 785.089 . AB=0.272727;ABP=22.751;AC=3;AF=0.5;AN=6;AO=25;CIGAR=1X2M2I3M;DP=58;DPB=69;DPRA=0;EPP=57.2971;EPPR=44.6459;GTI=0;LEN=1;MEANALT=2.33333;MQM=60;MQMR=60;NS=3;NUMALT=3;ODDS=0;PAIRED=1;PAIREDR=0.913043;PAO=0;PQA=0;PQR=0;PRO=0;QA=958;QR=904;RO=23;RPL=0;RPP=57.2971;RPPR=52.9542;RPR=25;RUN=1;SAF=25;SAP=57.2971;SAR=0;SRF=22;SRP=44.6459;SRR=1;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|1:26:13,10,3,0:13:513:10,3,0:381,114,0:-27.3399,0,-39.211,-21.9043,-32.8749,-63.2184,-31.2533,-42.2213,-64.1215,-73.4697 1|1:14:0,13,1,0:0:0:13,1,0:499,39,0:-44.8684,-3.91339,0,-41.6621,-0.317856,-41.3611,-44.8684,-3.91339,-41.6621,-44.8684 0|0:18:10,2,4,2:10:391:2,4,2:78,156,70:-9.82283,-6.41806,-37.9703,0,-25.7478,-30.9562,-7.14767,-32.8821,-26.4707,-38.6917 dDocent_Contig_8295 11 . T A 1259.24 . AB=0.608696;ABP=10.0912;AC=2;AF=0.333333;AN=6;AO=42;CIGAR=1X;DP=70;DPB=70;DPRA=34.5;EPP=94.2121;EPPR=63.8115;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=1662;QR=1104;RO=28;RPL=0;RPP=94.2121;RPPR=63.8115;RPR=42;RUN=1;SAF=42;SAP=94.2121;SAR=0;SRF=28;SRP=63.8115;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:45:13,32:13:519:32:1262:-100.311,0,-33.5076 0/0:1:1,0:1:41:0:0:0,-0.30103,-4.09457 0/1:24:14,10:14:544:10:400:-29.1354,0,-42.0684 dDocent_Contig_8296 98 . N A 92.38 . AB=0;ABP=0;AC=2;AF=1;AN=2;AO=3;CIGAR=1X;DP=3;DPB=3;DPRA=0;EPP=9.52472;EPPR=0;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=0;NS=1;NUMALT=1;ODDS=6.68461;PAIRED=1;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=99;QR=0;RO=0;RPL=3;RPP=9.52472;RPPR=0;RPR=0;RUN=1;SAF=3;SAP=9.52472;SAR=0;SRF=0;SRP=0;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 1/1:3:0,3:0:0:3:99:-9.23746,-0.90309,0 ./.:.:.:.:.:.:.:. ./.:.:.:.:.:.:.:. dDocent_Contig_8297 38 . T A 1228.51 . AB=0.6;ABP=9.09042;AC=3;AF=0.5;AN=6;AO=42;CIGAR=1X;DP=70;DPB=70;DPRA=0;EPP=94.2121;EPPR=63.8115;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=0.928571;PAO=0;PQA=0;PQR=0;PRO=0;QA=1639;QR=1097;RO=28;RPL=0;RPP=94.2121;RPPR=63.8115;RPR=42;RUN=1;SAF=42;SAP=94.2121;SAR=0;SRF=28;SRP=63.8115;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:46:18,28:18:711:28:1100:-85.4365,0,-50.4656 0/1:14:9,5:9:345:5:185:-12.7943,0,-27.1893 0/1:10:1,9:1:41:9:354:-29.2105,0,-1.08427 dDocent_Contig_8299 20 . C A 577.855 . AB=0.154812;ABP=250.367;AC=3;AF=0.5;AN=6;AO=37;CIGAR=1X;DP=239;DPB=239;DPRA=0;EPP=83.3548;EPPR=441.648;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=1.38778e-17;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=1483;QR=8152;RO=202;RPL=0;RPP=83.3548;RPPR=441.648;RPR=37;RUN=1;SAF=37;SAP=83.3548;SAR=0;SRF=202;SRP=441.648;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:177:149,28:149:6013:28:1126:-48.3411,0,-487.631 0/1:9:8,1:8:328:1:40:-1.28641,0,-27.1811 0/1:53:45,8:45:1811:8:317:-12.9402,0,-147.247 dDocent_Contig_8300 138 . G T 198.825 . AB=0.777778;ABP=9.04217;AC=1;AF=0.166667;AN=6;AO=8;CIGAR=1X;DP=33;DPB=33;DPRA=0.875;EPP=20.3821;EPPR=57.2971;GTI=0;LEN=1;MEANALT=1;MQM=45;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=0;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=309;QR=688;RO=25;RPL=0;RPP=20.3821;RPPR=57.2971;RPR=8;RUN=1;SAF=0;SAP=20.3821;SAR=8;SRF=0;SRP=57.2971;SRR=25;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:12:11,1:11:297:1:34:0,-0.245543,-23.6271 0/1:9:2,7:2:69:7:275:-21.7035,0,-3.84339 0/0:12:12,0:12:322:0:0:0,-3.61236,-29.2413 dDocent_Contig_8301 162 . A G 75.7064 . AB=0.444444;ABP=3.25157;AC=1;AF=0.166667;AN=6;AO=4;CIGAR=1X;DP=20;DPB=20;DPRA=1.63636;EPP=11.6962;EPPR=37.7539;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=0;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=131;QR=622;RO=16;RPL=4;RPP=11.6962;RPPR=37.7539;RPR=0;RUN=1;SAF=0;SAP=11.6962;SAR=4;SRF=0;SRP=37.7539;SRR=16;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:9:9,0:9:343:0:0:0,-2.70927,-31.2221 0/1:9:5,4:5:199:4:131:-9.39418,0,-15.5793 0/0:2:2,0:2:80:0:0:0,-0.60206,-7.59179 dDocent_Contig_8302 48 . T G 242.268 . AB=0.391304;ABP=5.3706;AC=1;AF=0.166667;AN=6;AO=9;CIGAR=1X;DP=37;DPB=37;DPRA=3.28571;EPP=22.5536;EPPR=63.8115;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=359;QR=1102;RO=28;RPL=0;RPP=22.5536;RPPR=63.8115;RPR=9;RUN=1;SAF=9;SAP=22.5536;SAR=0;SRF=28;SRP=63.8115;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:23:14,9:14:554:9:359:-25.7496,0,-43.2782 0/0:10:10,0:10:387:0:0:0,-3.0103,-35.181 0/0:4:4,0:4:161:0:0:0,-1.20412,-14.8749 dDocent_Contig_8303 61 . A C 255.038 . AB=0.526316;ABP=3.12459;AC=1;AF=0.166667;AN=6;AO=10;CIGAR=1X2M1X2M;DP=31;DPB=31;DPRA=3.16667;EPP=24.725;EPPR=42.0968;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=2;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=360;QR=648;RO=18;RPL=10;RPP=24.725;RPPR=42.0968;RPR=0;RUN=1;SAF=10;SAP=24.725;SAR=0;SRF=18;SRP=42.0968;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|1:19:9,0,10:9:327:0,10:0,360:-27.0246,-29.7338,-56.4409,0,-27.0686,-24.0583 0|0:2:2,0,0:2:72:0,0:0,0:0,-0.60206,-6.83672,-0.60206,-6.83672,-6.83672 0|0:10:7,2,0:7:249:2,0:70,0:0,-0.032383,-19.8855,-2.10721,-20.4876,-22.5395 dDocent_Contig_8304 9 . G A 93.8912 . AB=0.208333;ABP=20.744;AC=1;AF=0.166667;AN=6;AO=5;CIGAR=1X3M;DP=51;DPB=51;DPRA=1.77778;EPP=13.8677;EPPR=96.3836;GTI=0;LEN=1;MEANALT=2;MQM=60;MQMR=60;NS=3;NUMALT=2;ODDS=3.46945e-18;PAIRED=1;PAIREDR=0.697674;PAO=0;PQA=0;PQR=0;PRO=0;QA=195;QR=1652;RO=43;RPL=0;RPP=13.8677;RPPR=96.3836;RPR=5;RUN=1;SAF=5;SAP=13.8677;SAR=0;SRF=43;SRP=96.3836;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|1:24:17,2,5:17:656:2,5:78,195:-10.9119,-9.61781,-62.8851,0,-47.4569,-52.3637 0|0:10:10,0,0:10:373:0,0:0,0:0,-3.0103,-33.9178,-3.0103,-33.9178,-33.9178 0|0:17:16,1,0:16:623:1,0:40,0:0,-1.12183,-52.4123,-4.81648,-52.7133,-56.009 dDocent_Contig_8305 7 . T G 96.6922 . AB=0.454545;ABP=3.20771;AC=1;AF=0.166667;AN=6;AO=5;CIGAR=1X;DP=33;DPB=33;DPRA=1;EPP=13.8677;EPPR=63.8115;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=161;QR=1086;RO=28;RPL=0;RPP=13.8677;RPPR=63.8115;RPR=5;RUN=1;SAF=5;SAP=13.8677;SAR=0;SRF=28;SRP=63.8115;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:17:17,0:17:658:0:0:0,-5.11751,-59.5567 0/1:11:6,5:6:233:5:161:-11.4931,0,-18.0288 0/0:5:5,0:5:195:0:0:0,-1.50515,-17.9242 dDocent_Contig_8306 9 . G T 142.395 . AB=0.181818;ABP=51.3749;AC=3;AF=0.5;AN=6;AO=10;CIGAR=1X;DP=55;DPB=55;DPRA=0;EPP=24.725;EPPR=98.5551;GTI=0;LEN=1;MEANALT=1.33333;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=389;QR=1679;RO=44;RPL=0;RPP=24.725;RPPR=98.5551;RPR=10;RUN=1;SAF=10;SAP=24.725;SAR=0;SRF=44;SRP=98.5551;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:26:22,4:22:835:4:155:-6.49866,0,-67.6453 0/1:4:3,1:3:113:1:39:-2.69244,0,-9.33485 0/1:25:19,5:19:731:5:195:-10.5429,0,-58.7728 dDocent_Contig_8308 24 . T C 518.882 . AB=0.175758;ABP=153.684;AC=2;AF=0.333333;AN=6;AO=29;CIGAR=1X3M2D1M;DP=178;DPB=169.714;DPRA=6.34615;EPP=65.983;EPPR=315.702;GTI=0;LEN=1;MEANALT=2.5;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=0.931034;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=1152;QR=5637;RO=144;RPL=0;RPP=65.983;RPPR=315.702;RPR=29;RUN=1;SAF=29;SAP=65.983;SAR=0;SRF=144;SRP=315.702;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|1:125:102,19:102:3989:19:752:-31.1998,0,-322.248 0|0:13:13,0:13:510:0:0:0,-3.91339,-46.2469 0|1:40:29,10:29:1138:10:400:-24.2113,0,-90.563 dDocent_Contig_8309 8 . C T 300.153 . AB=0.255814;ABP=25.2805;AC=4;AF=0.666667;AN=6;AO=13;CIGAR=1X;DP=45;DPB=45;DPRA=0;EPP=31.2394;EPPR=72.4974;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=504;QR=1242;RO=32;RPL=0;RPP=31.2394;RPPR=72.4974;RPR=13;RUN=1;SAF=13;SAP=31.2394;SAR=0;SRF=32;SRP=72.4974;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:32:26,6:26:1012:6:233:-11.7071,0,-81.7568 1/1:2:0,2:0:0:2:77:-7.30914,-0.60206,0 0/1:11:6,5:6:230:5:194:-14.5215,0,-17.755 dDocent_Contig_8310 8 . C T 302.626 . AB=0.246154;ABP=39.3908;AC=3;AF=0.5;AN=6;AO=16;CIGAR=1X;DP=65;DPB=65;DPRA=0;EPP=37.7539;EPPR=109.412;GTI=0;LEN=1;MEANALT=1;MQM=59.875;MQMR=60;NS=3;NUMALT=1;ODDS=3.46945e-18;PAIRED=0.9375;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=603;QR=1888;RO=49;RPL=0;RPP=37.7539;RPPR=109.412;RPR=16;RUN=1;SAF=16;SAP=37.7539;SAR=0;SRF=49;SRP=109.412;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:34:23,11:23:889:11:420:-27.9154,0,-70.0943 0/1:9:7,2:7:273:2:76:-4.5054,0,-22.2287 0/1:22:19,3:19:726:3:107:-3.35789,0,-59.0476 dDocent_Contig_8311 29 . G A 99.6382 . AB=0.357143;ABP=5.49198;AC=1;AF=0.25;AN=4;AO=5;CIGAR=1X;DP=29;DPB=29;DPRA=0.933333;EPP=13.8677;EPPR=55.1256;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=2;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=176;QR=964;RO=24;RPL=0;RPP=13.8677;RPPR=55.1256;RPR=5;RUN=1;SAF=5;SAP=13.8677;SAR=0;SRF=24;SRP=55.1256;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:15:15,0:15:602:0:0:0,-4.51545,-54.5192 ./.:.:.:.:.:.:.:. 0/1:14:9,5:9:362:5:176:-11.9638,0,-28.7298 dDocent_Contig_8312 13 . C A 1541.19 . AB=0.0526316;ABP=69.0688;AC=0;AF=0;AN=6;AO=2;CIGAR=1X2M1X;DP=75;DPB=75;DPRA=2.11111;EPP=7.35324;EPPR=57.2971;GTI=0;LEN=1;MEANALT=2;MQM=60;MQMR=60;NS=3;NUMALT=2;ODDS=6.93889e-18;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=81;QR=988;RO=25;RPL=0;RPP=7.35324;RPPR=57.2971;RPR=2;RUN=1;SAF=2;SAP=7.35324;SAR=0;SRF=25;SRP=57.2971;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|0:38:12,2,24:12:473:2,24:81,960:-75.4551,-72.3879,-110.7,0,-32.2258,-31.6818 0|0:18:0,0,18:0:0:0,18:0,732:-66.2042,-66.2042,-66.2042,-5.41854,-5.41854,0 0|0:19:13,0,6:13:515:0,6:0,237:-15.9824,-19.8958,-62.2856,0,-42.7847,-40.9786 dDocent_Contig_8313 12 . C T 238.165 . AB=0.225;ABP=29.2851;AC=1;AF=0.166667;AN=6;AO=10;CIGAR=1X2M1X4M;DP=86;DPB=86;DPRA=0;EPP=24.725;EPPR=128.956;GTI=0;LEN=1;MEANALT=2.5;MQM=51.5;MQMR=51.1724;NS=3;NUMALT=5;ODDS=0;PAIRED=1;PAIREDR=0.982759;PAO=0;PQA=0;PQR=0;PRO=0;QA=391;QR=2280;RO=58;RPL=0;RPP=24.725;RPPR=128.956;RPR=10;RUN=1;SAF=10;SAP=24.725;SAR=0;SRF=58;SRP=128.956;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|1:40:25,0,0,9,6,0:25:982:0,0,9,6,0:0,0,351,234,0:-21.0446,-28.5704,-97.0886,-28.5704,-97.0886,-97.0886,0,-68.5215,-68.5215,-65.8122,-10.696,-79.2037,-79.2037,-50.6335,-77.3975,-28.5704,-97.0886,-97.0886,-68.5215,-79.2037,-97.0886 0|0:20:10,2,4,0,0,3:10:395:2,4,0,0,3:80,32,0,0,113:-6.29471,-8.67609,-25.5731,-8.63346,-25.4645,-24.8931,-9.30501,-26.1752,-26.0972,-26.8177,-9.30501,-26.1752,-26.0972,-26.8177,-26.8177,0,-16.921,-16.8436,-17.5644,-17.5644,-16.6613 0|0:26:23,0,0,1,1,1:23:903:0,0,1,1,1:0,0,40,39,18:0,-6.92369,-80.6433,-6.92369,-80.6433,-80.6433,-3.59702,-77.3627,-77.3627,-77.0616,-3.91303,-77.6634,-77.6634,-74.3828,-77.3624,-5.94954,-79.6013,-79.6013,-76.321,-76.6218,-79.3003 dDocent_Contig_8314 18 . A G 268.816 . AB=0.104167;ABP=68.3354;AC=1;AF=0.166667;AN=6;AO=5;CIGAR=1X2M1X;DP=67;DPB=67;DPRA=0;EPP=13.8677;EPPR=109.412;GTI=0;LEN=1;MEANALT=1.5;MQM=13;MQMR=60;NS=3;NUMALT=2;ODDS=0;PAIRED=0;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=199;QR=1940;RO=49;RPL=0;RPP=13.8677;RPPR=109.412;RPR=5;RUN=1;SAF=5;SAP=13.8677;SAR=0;SRF=49;SRP=109.412;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|0:36:27,2,7:27:1074:2,7:82,274:-14.603,-21.052,-108.881,0,-86.957,-86.5681 0|1:12:9,3,0:9:351:3,0:117,0:-0.0246909,0,-28.3368,-2.73396,-29.2399,-31.779 0|0:19:13,0,6:13:515:0,6:0,235:-15.7999,-19.7133,-62.1031,0,-42.7825,-40.9763 dDocent_Contig_8315 45 . G A 1635.99 . AB=0.437037;ABP=7.65886;AC=3;AF=0.5;AN=6;AO=59;CIGAR=1X;DP=135;DPB=135;DPRA=0;EPP=131.127;EPPR=168.042;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=0.966102;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=2320;QR=2955;RO=76;RPL=0;RPP=131.127;RPPR=168.042;RPR=59;RUN=1;SAF=59;SAP=131.127;SAR=0;SRF=76;SRP=168.042;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:104:54,50:54:2097:50:1975:-146.639,0,-157.621 0/1:4:1,3:1:41:3:122:-10.1684,0,-2.89045 0/1:27:21,6:21:817:6:223:-12.2966,0,-65.7187 dDocent_Contig_8316 39 . A T 246.049 . AB=0.384615;ABP=6.01695;AC=2;AF=0.5;AN=4;AO=10;CIGAR=1X;DP=26;DPB=26;DPRA=0;EPP=24.725;EPPR=37.7539;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=2;NUMALT=1;ODDS=0;PAIRED=0.8;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=393;QR=632;RO=16;RPL=0;RPP=24.725;RPPR=37.7539;RPR=10;RUN=1;SAF=10;SAP=24.725;SAR=0;SRF=16;SRP=37.7539;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:19:11,8:11:430:8:311:-22.6313,0,-33.3253 0/1:7:5,2:5:202:2:82:-5.67247,0,-16.4543 ./.:.:.:.:.:.:.:. dDocent_Contig_8317 9 . G T 218.043 . AB=0.25;ABP=24.725;AC=1;AF=0.166667;AN=6;AO=10;CIGAR=1X;DP=55;DPB=55;DPRA=5.33333;EPP=24.725;EPPR=100.727;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=389;QR=1724;RO=45;RPL=0;RPP=24.725;RPPR=100.727;RPR=10;RUN=1;SAF=10;SAP=24.725;SAR=0;SRF=45;SRP=100.727;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:40:30,10:30:1150:10:389:-23.3272,0,-91.7587 0/0:8:8,0:8:308:0:0:0,-2.40824,-28.0822 0/0:7:7,0:7:266:0:0:0,-2.10721,-24.3005 dDocent_Contig_8318 10 . G A 42.4094 . AB=0.125;ABP=51.8684;AC=1;AF=0.166667;AN=6;AO=5;CIGAR=1X;DP=93;DPB=93;DPRA=1.50943;EPP=13.8677;EPPR=194.1;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=0.977273;PAO=0;PQA=0;PQR=0;PRO=0;QA=197;QR=3441;RO=88;RPL=0;RPP=13.8677;RPPR=194.1;RPR=5;RUN=1;SAF=5;SAP=13.8677;SAR=0;SRF=88;SRP=194.1;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:32:32,0:32:1251:0:0:0,-9.63296,-112.852 0/1:40:35,5:35:1370:5:197:-6.06483,0,-111.522 0/0:21:21,0:21:820:0:0:0,-6.32163,-74.1118 dDocent_Contig_8319 8 . C T 84.1104 . AB=0.193548;ABP=28.2974;AC=2;AF=0.333333;AN=6;AO=6;CIGAR=1X;DP=53;DPB=53;DPRA=0.704545;EPP=16.0391;EPPR=105.07;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=228;QR=1816;RO=47;RPL=0;RPP=16.0391;RPPR=105.07;RPR=6;RUN=1;SAF=6;SAP=16.0391;SAR=0;SRF=47;SRP=105.07;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:22:19,3:19:737:3:114:-4.00956,0,-60.0384 0/0:22:22,0:22:845:0:0:0,-6.62266,-76.3712 0/1:9:6,3:6:234:3:114:-7.92295,0,-18.7218 dDocent_Contig_8320 12 . A C 257.407 . AB=0.185185;ABP=72.7387;AC=2;AF=0.333333;AN=6;AO=17;CIGAR=1X;DP=109;DPB=109;DPRA=0;EPP=39.9253;EPPR=202.786;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=646;QR=3547;RO=92;RPL=0;RPP=39.9253;RPPR=202.786;RPR=17;RUN=1;SAF=17;SAP=39.9253;SAR=0;SRF=92;SRP=202.786;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:73:63,10:63:2423:10:398:-14.2045,0,-196.284 0/1:8:3,5:3:117:5:190:-15.0591,0,-8.50146 0/0:28:26,2:26:1007:2:58:0,-2.92402,-85.4291 dDocent_Contig_8321 17 . T C 201.112 . AB=0.25641;ABP=23.1103;AC=3;AF=0.5;AN=6;AO=10;CIGAR=1X;DP=39;DPB=39;DPRA=0;EPP=24.725;EPPR=63.8115;GTI=0;LEN=1;MEANALT=1.33333;MQM=60;MQMR=59.1429;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=0.964286;PAO=0;PQA=0;PQR=0;PRO=0;QA=403;QR=1095;RO=28;RPL=0;RPP=24.725;RPPR=63.8115;RPR=10;RUN=1;SAF=10;SAP=24.725;SAR=0;SRF=28;SRP=63.8115;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:24:17,7:17:662:7:284:-18.7093,0,-52.6863 0/1:3:1,1:1:37:1:39:-2.89989,0,-2.71109 0/1:12:10,2:10:396:2:80:-3.97943,0,-31.8945 dDocent_Contig_8322 97 . A C 31.2898 . AB=0.4;ABP=3.44459;AC=1;AF=0.166667;AN=6;AO=2;CIGAR=1X;DP=23;DPB=23;DPRA=0.555556;EPP=7.35324;EPPR=48.6112;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=68;QR=743;RO=21;RPL=2;RPP=7.35324;RPPR=48.6112;RPR=0;RUN=1;SAF=2;SAP=7.35324;SAR=0;SRF=21;SRP=48.6112;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:8:8,0:8:288:0:0:0,-2.40824,-26.2674 0/1:5:3,2:3:108:2:68:-4.95256,0,-8.57002 0/0:10:10,0:10:347:0:0:0,-3.0103,-31.5634 dDocent_Contig_8324 37 . C T 1895.68 . AB=0.605769;ABP=13.116;AC=3;AF=0.5;AN=6;AO=63;CIGAR=1X;DP=104;DPB=104;DPRA=0;EPP=139.813;EPPR=92.0407;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=6.93889e-18;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=2505;QR=1660;RO=41;RPL=0;RPP=139.813;RPPR=92.0407;RPR=63;RUN=1;SAF=63;SAP=139.813;SAR=0;SRF=41;SRP=92.0407;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:79:24,55:24:965:55:2182:-172.775,0,-63.3661 0/1:6:2,4:2:82:4:162:-13.1608,0,-5.9735 0/1:19:15,4:15:613:4:161:-9.15533,0,-49.7872 dDocent_Contig_8325 8 . C T 118.882 . AB=0.26087;ABP=14.4341;AC=1;AF=0.166667;AN=6;AO=6;CIGAR=1X;DP=32;DPB=32;DPRA=5.11111;EPP=16.0391;EPPR=59.4686;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=0.730769;PAO=0;PQA=0;PQR=0;PRO=0;QA=222;QR=1000;RO=26;RPL=0;RPP=16.0391;RPPR=59.4686;RPR=6;RUN=1;SAF=6;SAP=16.0391;SAR=0;SRF=26;SRP=59.4686;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:23:17,6:17:654:6:222:-13.4104,0,-52.2708 0/0:1:1,0:1:39:0:0:0,-0.30103,-3.89656 0/0:8:8,0:8:307:0:0:0,-2.40824,-27.9912 dDocent_Contig_8326 9 . G A 109.693 . AB=0.357143;ABP=5.49198;AC=1;AF=0.166667;AN=6;AO=5;CIGAR=1X;DP=67;DPB=67;DPRA=0.528302;EPP=13.8677;EPPR=137.642;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=8.67362e-19;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=185;QR=2380;RO=62;RPL=0;RPP=13.8677;RPPR=137.642;RPR=5;RUN=1;SAF=5;SAP=13.8677;SAR=0;SRF=62;SRP=137.642;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:42:42,0:42:1625:0:0:0,-12.6433,-146.514 0/1:14:9,5:9:328:5:185:-12.7932,0,-25.6497 0/0:11:11,0:11:427:0:0:0,-3.31133,-38.7851 dDocent_Contig_8327 177 . C G 179.067 . AB=0.285714;ABP=14.1779;AC=3;AF=0.5;AN=6;AO=8;CIGAR=1X;DP=28;DPB=28;DPRA=0;EPP=20.3821;EPPR=46.4397;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=324;QR=807;RO=20;RPL=8;RPP=20.3821;RPPR=46.4397;RPR=0;RUN=1;SAF=0;SAP=20.3821;SAR=8;SRF=0;SRP=46.4397;SRR=20;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:12:7,5:7:284:5:204:-15.1317,0,-22.3214 0/1:4:2,2:2:82:2:79:-6.29351,0,-6.57556 0/1:12:11,1:11:441:1:41:-0.482207,0,-36.4327 dDocent_Contig_8328 98 . N A 335.177 . AB=0;ABP=0;AC=6;AF=1;AN=6;AO=12;CIGAR=1X;DP=12;DPB=12;DPRA=0;EPP=29.068;EPPR=0;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=0;NS=3;NUMALT=1;ODDS=0;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=357;QR=0;RO=0;RPL=12;RPP=29.068;RPPR=0;RPR=0;RUN=1;SAF=12;SAP=29.068;SAR=0;SRF=0;SRP=0;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 1/1:9:0,9:0:0:9:266:-24.2312,-2.70927,0 1/1:2:0,2:0:0:2:58:-5.50905,-0.60206,0 1/1:1:0,1:0:0:1:33:-3.29913,-0.30103,0 dDocent_Contig_8331 61 . A C 1288.43 . AB=0.582278;ABP=7.6556;AC=3;AF=0.5;AN=6;AO=46;CIGAR=1X;DP=79;DPB=79;DPRA=0;EPP=102.898;EPPR=74.6689;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=1746;QR=1242;RO=33;RPL=46;RPP=102.898;RPPR=74.6689;RPR=0;RUN=1;SAF=46;SAP=102.898;SAR=0;SRF=33;SRP=74.6689;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:51:22,29:22:853:29:1115:-85.2984,0,-61.7396 0/1:13:2,11:2:77:11:412:-33.513,0,-3.39575 0/1:15:9,6:9:312:6:219:-15.5486,0,-23.8986 dDocent_Contig_8333 22 . A G 873.428 . AB=0.464789;ABP=3.7749;AC=3;AF=0.5;AN=6;AO=33;CIGAR=1X1M1X;DP=71;DPB=71;DPRA=0;EPP=74.6689;EPPR=83.3548;GTI=0;LEN=1;MEANALT=1.33333;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=6.93889e-18;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=1259;QR=1438;RO=37;RPL=0;RPP=74.6689;RPPR=83.3548;RPR=33;RUN=1;SAF=33;SAP=74.6689;SAR=0;SRF=37;SRP=83.3548;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|1:42:25,16:25:985:16:611:-42.5634,0,-76.2037 0|1:10:3,7:3:109:7:270:-21.6544,0,-7.15759 0|1:19:9,10:9:344:10:378:-28.6479,0,-25.5976 dDocent_Contig_8334 23 . A G 660.066 . AB=0.163265;ABP=51.2702;AC=0;AF=0;AN=6;AO=8;CIGAR=1X3M3X2M1X1M1X;DP=74;DPB=74;DPRA=0;EPP=20.3821;EPPR=89.8692;GTI=0;LEN=1;MEANALT=2;MQM=8.75;MQMR=60;NS=3;NUMALT=2;ODDS=0;PAIRED=0;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=313;QR=1579;RO=40;RPL=0;RPP=20.3821;RPPR=89.8692;RPR=8;RUN=1;SAF=8;SAP=20.3821;SAR=0;SRF=40;SRP=89.8692;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|0:49:30,8,11:30:1184:8,11:313,418:-25.4077,-30.6724,-125.696,0,-93.8388,-94.3521 0|0:13:2,0,11:2:77:0,11:0,432:-35.3142,-35.9163,-42.2372,0,-6.70677,-3.39544 0|0:12:8,0,4:8:318:0,4:0,156:-10.8018,-13.21,-39.3969,0,-26.579,-25.3748 dDocent_Contig_8335 10 . C T 169.578 . AB=0.235294;ABP=23.7032;AC=1;AF=0.166667;AN=6;AO=8;CIGAR=1X;DP=55;DPB=55;DPRA=3.2381;EPP=20.3821;EPPR=105.07;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=315;QR=1896;RO=47;RPL=0;RPP=20.3821;RPPR=105.07;RPR=8;RUN=1;SAF=8;SAP=20.3821;SAR=0;SRF=47;SRP=105.07;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:34:26,8:26:1045:8:315:-18.4807,0,-84.1066 0/0:6:6,0:6:244:0:0:0,-1.80618,-22.3388 0/0:15:15,0:15:607:0:0:0,-4.51545,-54.9665 dDocent_Contig_8336 8 . C T 56.7321 . AB=0.117021;ABP=122.765;AC=3;AF=0.5;AN=6;AO=11;CIGAR=1X;DP=94;DPB=94;DPRA=0;EPP=26.8965;EPPR=183.243;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=6.93889e-18;PAIRED=0.727273;PAIREDR=0.771084;PAO=0;PQA=0;PQR=0;PRO=0;QA=408;QR=3174;RO=83;RPL=0;RPP=26.8965;RPPR=183.243;RPR=11;RUN=1;SAF=11;SAP=26.8965;SAR=0;SRF=83;SRP=183.243;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:65:58,7:58:2228:7:260:-4.18688,0,-181.174 0/1:10:9,1:9:342:1:33:-0.288835,0,-28.1264 0/1:19:16,3:16:604:3:115:-5.00532,0,-48.9776 dDocent_Contig_8337 9 . G A 127.89 . AB=0.454545;ABP=3.20771;AC=1;AF=0.166667;AN=6;AO=6;CIGAR=1X;DP=66;DPB=66;DPRA=2.03846;EPP=16.0391;EPPR=133.299;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=227;QR=2257;RO=60;RPL=0;RPP=16.0391;RPPR=133.299;RPR=6;RUN=1;SAF=6;SAP=16.0391;SAR=0;SRF=60;SRP=133.299;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:42:41,1:41:1531:1:32:0,-9.44395,-134.859 0/1:11:6,5:6:232:5:195:-14.6129,0,-17.9376 0/0:13:13,0:13:494:0:0:0,-3.91339,-44.8067 dDocent_Contig_8338 42 . A G 71.4035 . AB=0.375;ABP=4.09604;AC=1;AF=0.166667;AN=6;AO=3;CIGAR=1X;DP=42;DPB=42;DPRA=0.470588;EPP=9.52472;EPPR=87.6977;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=0.948718;PAO=0;PQA=0;PQR=0;PRO=0;QA=122;QR=1567;RO=39;RPL=0;RPP=9.52472;RPPR=87.6977;RPR=3;RUN=1;SAF=3;SAP=9.52472;SAR=0;SRF=39;SRP=87.6977;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:26:26,0:26:1049:0:0:0,-7.82678,-94.6999 0/1:8:5,3:5:201:3:122:-8.96425,0,-16.0623 0/0:8:8,0:8:317:0:0:0,-2.40824,-28.8955 dDocent_Contig_8340 7 . T C 1426.52 . AB=0.0714286;ABP=47.6806;AC=1;AF=0.166667;AN=6;AO=2;CIGAR=4X;DP=75;DPB=75;DPRA=0;EPP=7.35324;EPPR=35.5824;GTI=0;LEN=1;MEANALT=4;MQM=60;MQMR=60;NS=3;NUMALT=4;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=77;QR=563;RO=15;RPL=0;RPP=7.35324;RPPR=35.5824;RPR=2;RUN=1;SAF=2;SAP=7.35324;SAR=0;SRF=15;SRP=35.5824;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|0:35:10,4,4,0,17:10:373:4,4,0,17:156,145,0,661:-51.3067,-41.4925,-70.8202,-42.4826,-60.1883,-71.8086,-54.317,-72.0243,-73.0127,-84.8489,0,-17.7056,-18.6983,-30.5335,-25.416 0|0:12:5,0,0,0,7:5:190:0,0,0,7:0,0,0,280:-21.9588,-23.464,-39.0381,-23.464,-39.0381,-39.0381,-23.464,-39.0381,-39.0381,-39.0381,0,-15.9622,-15.9622,-15.9622,-13.8549 1|0:28:0,8,3,2,15:0:0:8,3,2,15:310,110,77,600:-74.9091,-49.4427,-47.0344,-65.9215,-40.4568,-65.0185,-68.5873,-43.1212,-59.6,-67.9852,-25.4764,0,-16.4905,-19.1536,-20.961 dDocent_Contig_8342 9 . G A 167.926 . AB=0.333333;ABP=8.07707;AC=1;AF=0.166667;AN=6;AO=9;CIGAR=1X;DP=68;DPB=68;DPRA=8;EPP=22.5536;EPPR=131.127;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=350;QR=2261;RO=59;RPL=0;RPP=22.5536;RPPR=131.127;RPR=9;RUN=1;SAF=9;SAP=22.5536;SAR=0;SRF=59;SRP=131.127;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:43:41,2:41:1572:2:77:0,-5.63515,-134.441 0/0:4:4,0:4:149:0:0:0,-1.20412,-13.7728 0/1:21:14,7:14:540:7:273:-18.6164,0,-42.624 dDocent_Contig_8343 107 . N A 239.739 . AB=0;ABP=0;AC=4;AF=1;AN=4;AO=8;CIGAR=1X;DP=8;DPB=8;DPRA=0;EPP=20.3821;EPPR=0;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=0;NS=2;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=256;QR=0;RO=0;RPL=0;RPP=20.3821;RPPR=0;RPR=8;RUN=1;SAF=0;SAP=20.3821;SAR=8;SRF=0;SRP=0;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 1/1:4:0,4:0:0:4:118:-10.9121,-1.20412,0 ./.:.:.:.:.:.:.:. 1/1:4:0,4:0:0:4:138:-12.7604,-1.20412,0 dDocent_Contig_8344 8 . C G 389.926 . AB=0.256757;ABP=41.0404;AC=3;AF=0.5;AN=6;AO=19;CIGAR=1X;DP=74;DPB=74;DPRA=0;EPP=44.2683;EPPR=122.441;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=730;QR=2111;RO=55;RPL=0;RPP=44.2683;RPPR=122.441;RPR=19;RUN=1;SAF=19;SAP=44.2683;SAR=0;SRF=55;SRP=122.441;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:54:42,12:42:1608:12:463:-25.7653,0,-128.731 0/1:6:3,3:3:115:3:111:-8.54731,0,-8.91871 0/1:14:10,4:10:388:4:156:-10.2029,0,-31.0635 dDocent_Contig_8345 144 . A T 264.625 . AB=0.142857;ABP=72.8076;AC=2;AF=0.333333;AN=6;AO=9;CIGAR=1X3M1X;DP=63;DPB=63;DPRA=0;EPP=22.5536;EPPR=14.9269;GTI=0;LEN=1;MEANALT=2;MQM=40.1111;MQMR=46.878;NS=3;NUMALT=2;ODDS=0;PAIRED=0;PAIREDR=0.682927;PAO=0;PQA=0;PQR=0;PRO=0;QA=360;QR=1623;RO=41;RPL=0;RPP=22.5536;RPPR=92.0407;RPR=9;RUN=1;SAF=9;SAP=22.5536;SAR=0;SRF=13;SRP=14.9269;SRR=28;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|0:39:27,3,9:27:1070:3,9:121,349:-17.8931,-16.7565,-89.0995,0,-63.9606,-70.5145 0|1:19:12,5,2:12:473:5,2:199,78:-11.241,0,-32.9437,-9.85495,-29.4417,-43.6598 0|1:5:2,1,2:2:80:1,2:40,80:-2.56663,0,-1.82947,-2.5276,-1.32793,-3.87126 dDocent_Contig_8346 9 . G A 105.965 . AB=0.263158;ABP=12.2676;AC=1;AF=0.25;AN=4;AO=5;CIGAR=1X1M1X;DP=30;DPB=30;DPRA=1.72727;EPP=13.8677;EPPR=57.2971;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=2;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=0.88;PAO=0;PQA=0;PQR=0;PRO=0;QA=196;QR=893;RO=25;RPL=0;RPP=13.8677;RPPR=57.2971;RPR=5;RUN=1;SAF=5;SAP=13.8677;SAR=0;SRF=25;SRP=57.2971;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|1:19:14,5:14:500:5:196:-12.2955,0,-39.6132 .:.:.:.:.:.:.:. 0|0:11:11,0:11:393:0:0:0,-3.31133,-35.705 dDocent_Contig_8348 11 . G A 287.541 . AB=0.169643;ABP=109.18;AC=3;AF=0.5;AN=6;AO=19;CIGAR=1X2M1X;DP=112;DPB=112;DPRA=0;EPP=44.2683;EPPR=204.957;GTI=0;LEN=1;MEANALT=1;MQM=59.8421;MQMR=59.4194;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=0.967742;PAO=0;PQA=0;PQR=0;PRO=0;QA=741;QR=3596;RO=93;RPL=0;RPP=44.2683;RPPR=204.957;RPR=19;RUN=1;SAF=19;SAP=44.2683;SAR=0;SRF=93;SRP=204.957;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|1:75:68,7:68:2628:7:268:-1.90381,0,-213.586 0|1:10:4,6:4:158:6:239:-18.872,0,-11.5897 0|1:27:21,6:21:810:6:234:-13.3022,0,-65.0966 dDocent_Contig_8349 78 . G A 116.245 . AB=0.0952381;ABP=32.8939;AC=0;AF=0;AN=4;AO=2;CIGAR=2X1M1X1M;DP=28;DPB=28;DPRA=3;EPP=7.35324;EPPR=42.0968;GTI=0;LEN=1;MEANALT=3;MQM=56;MQMR=60;NS=2;NUMALT=3;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=69;QR=582;RO=18;RPL=2;RPP=7.35324;RPPR=42.0968;RPR=0;RUN=1;SAF=2;SAP=7.35324;SAR=0;SRF=18;SRP=42.0968;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|0:21:11,2,2,6:11:358:2,2,6:69,73,205:-13.3234,-11.0321,-39.3184,-10.9819,-34.2668,-39.2686,0,-23.2789,-23.229,-27.0773 .:.:.:.:.:.:.:. 0|0:7:7,0,0,0:7:224:0,0,0:0,0,0:0,-2.10721,-20.4745,-2.10721,-20.4745,-20.4745,-2.10721,-20.4745,-20.4745,-20.4745 dDocent_Contig_8350 62 . C T 70.7073 . AB=0.217391;ABP=18.9659;AC=1;AF=0.166667;AN=6;AO=5;CIGAR=1X;DP=46;DPB=46;DPRA=2;EPP=13.8677;EPPR=92.0407;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=1.73472e-18;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=172;QR=1336;RO=41;RPL=5;RPP=13.8677;RPPR=92.0407;RPR=0;RUN=1;SAF=5;SAP=13.8677;SAR=0;SRF=41;SRP=92.0407;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:12:12,0:12:400:0:0:0,-3.61236,-36.3219 0/1:23:18,5:18:571:5:172:-8.89463,0,-44.768 0/0:11:11,0:11:365:0:0:0,-3.31133,-33.1715 dDocent_Contig_8351 108 . G A 893.67 . AB=0.134146;ABP=98.3432;AC=4;AF=0.666667;AN=6;AO=11;CIGAR=1X2M1X5M4I2M;DP=118;DPB=140.182;DPRA=0;EPP=26.8965;EPPR=68.1545;GTI=0;LEN=1;MEANALT=5;MQM=24.0909;MQMR=60;NS=3;NUMALT=2;ODDS=0;PAIRED=0;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=233;QR=991;RO=30;RPL=0;RPP=26.8965;RPPR=68.1545;RPR=11;RUN=1;SAF=11;SAP=26.8965;SAR=0;SRF=0;SRP=68.1545;SRR=30;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|1:67:15,38,4:15:501:38,4:1022,48:-68.3446,0,-29.1607,-70.765,-38.5245,-110.139 1|1:15:1,5,7:1:33:5,7:84,185:-15.0699,-10.4293,-11.5988,-2.17853,0,-2.75558 0|1:36:14,9,0:14:457:9,0:229,0:-11.4497,0,-34.2929,-15.6641,-37.0022,-52.6277 dDocent_Contig_8352 21 . C T 476.432 . AB=0.161111;ABP=182.567;AC=2;AF=0.333333;AN=6;AO=29;CIGAR=1X;DP=189;DPB=189;DPRA=10;EPP=65.983;EPPR=350.446;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=1163;QR=6368;RO=160;RPL=0;RPP=65.983;RPPR=350.446;RPR=29;RUN=1;SAF=29;SAP=65.983;SAR=0;SRF=160;SRP=350.446;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:134:114,20:114:4535:20:799:-31.8896,0,-367.73 0/0:9:9,0:9:356:0:0:0,-2.70927,-32.4017 0/1:46:37,9:37:1477:9:364:-19.2765,0,-119.329 dDocent_Contig_8354 186 . G T 35.7865 . AB=0.25;ABP=7.35324;AC=1;AF=0.25;AN=4;AO=2;CIGAR=1X3M1X;DP=16;DPB=16;DPRA=1;EPP=7.35324;EPPR=33.4109;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=2;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=81;QR=545;RO=14;RPL=2;RPP=7.35324;RPPR=33.4109;RPR=0;RUN=1;SAF=0;SAP=7.35324;SAR=2;SRF=0;SRP=33.4109;SRR=14;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|1:8:6,2:6:226:2:81:-5.27749,0,-18.2892 .:.:.:.:.:.:.:. 0|0:8:8,0:8:319:0:0:0,-2.40824,-29.078 dDocent_Contig_8355 15 . T C 7322.77 . AB=0.844444;ABP=95.7563;AC=4;AF=0.666667;AN=6;AO=214;CIGAR=1X;DP=229;DPB=229;DPRA=0;EPP=467.705;EPPR=35.5824;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=8518;QR=600;RO=15;RPL=0;RPP=467.705;RPPR=35.5824;RPR=214;RUN=1;SAF=214;SAP=467.705;SAR=0;SRF=15;SRP=35.5824;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 1/1:139:1,138:1:41:138:5496:-490.381,-37.7486,0 0/1:15:7,8:7:284:8:323:-24.9233,0,-21.4183 0/1:75:7,68:7:275:68:2699:-220.455,0,-2.54035 dDocent_Contig_8356 77 . A C 176.778 . AB=0.151163;ABP=93.9091;AC=3;AF=0.5;AN=6;AO=13;CIGAR=1X;DP=86;DPB=86;DPRA=0;EPP=31.2394;EPPR=161.528;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=515;QR=2842;RO=73;RPL=13;RPP=31.2394;RPPR=161.528;RPR=0;RUN=1;SAF=13;SAP=31.2394;SAR=0;SRF=73;SRP=161.528;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:44:37,7:37:1474:7:280:-12.3253,0,-119.662 0/1:8:5,3:5:195:3:121:-8.87175,0,-15.5147 0/1:34:31,3:31:1173:3:114:-0.396957,0,-95.6317 dDocent_Contig_8357 18 . T C 2434.65 . AB=0.413462;ABP=16.5402;AC=3;AF=0.5;AN=6;AO=86;CIGAR=1X;DP=208;DPB=208;DPRA=0;EPP=189.757;EPPR=267.93;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=3453;QR=4799;RO=122;RPL=0;RPP=189.757;RPPR=267.93;RPR=86;RUN=1;SAF=86;SAP=189.757;SAR=0;SRF=122;SRP=267.93;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:136:83,53:83:3275:53:2132:-151.112,0,-253.877 0/1:13:4,9:4:157:9:357:-28.5797,0,-10.5943 0/1:59:35,24:35:1367:24:964:-69.2965,0,-105.535 dDocent_Contig_8358 25 . T C 6355.21 . AB=0.866667;ABP=90.593;AC=4;AF=0.666667;AN=6;AO=193;CIGAR=1X;DP=213;DPB=213;DPRA=0;EPP=422.104;EPPR=46.4397;GTI=0;LEN=1;MEANALT=1;MQM=59.9067;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=0.979275;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=7725;QR=793;RO=20;RPL=0;RPP=422.104;RPPR=46.4397;RPR=193;RUN=1;SAF=193;SAP=422.104;SAR=0;SRF=20;SRP=46.4397;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 1/1:138:10,128:10:384:128:5137:-427.279,-6.64164,0 0/1:10:1,9:1:41:9:361:-29.8436,0,-1.08427 0/1:65:9,56:9:368:56:2227:-180.988,0,-13.9184 dDocent_Contig_8359 34 . T C 41.6822 . AB=0.4;ABP=3.44459;AC=1;AF=0.166667;AN=6;AO=2;CIGAR=1X;DP=54;DPB=54;DPRA=0.204082;EPP=7.35324;EPPR=115.927;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=79;QR=2056;RO=52;RPL=0;RPP=7.35324;RPPR=115.927;RPR=2;RUN=1;SAF=2;SAP=7.35324;SAR=0;SRF=52;SRP=115.927;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:40:40,0:40:1576:0:0:0,-12.0412,-142.079 0/1:5:3,2:3:121:2:79:-5.99209,0,-9.77505 0/0:9:9,0:9:359:0:0:0,-2.70927,-32.6721 dDocent_Contig_8360 8 . C T 214.449 . AB=0.27027;ABP=19.9713;AC=2;AF=0.333333;AN=6;AO=10;CIGAR=1X;DP=48;DPB=48;DPRA=1.68182;EPP=24.725;EPPR=85.5263;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=57.5263;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=0.947368;PAO=0;PQA=0;PQR=0;PRO=0;QA=386;QR=1437;RO=38;RPL=0;RPP=24.725;RPPR=85.5263;RPR=10;RUN=1;SAF=10;SAP=24.725;SAR=0;SRF=38;SRP=85.5263;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:11:11,0:11:429:0:0:0,-3.31133,-36.7854 0/1:9:8,1:8:310:1:38:-1.088,0,-25.5543 0/1:28:19,9:19:698:9:348:-23.2514,0,-52.1775 dDocent_Contig_8361 59 . A T 43.1472 . AB=0.2;ABP=14.7363;AC=1;AF=0.166667;AN=6;AO=3;CIGAR=1X;DP=26;DPB=26;DPRA=2.72727;EPP=9.52472;EPPR=52.9542;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=0.956522;PAO=0;PQA=0;PQR=0;PRO=0;QA=111;QR=824;RO=23;RPL=3;RPP=9.52472;RPPR=52.9542;RPR=0;RUN=1;SAF=3;SAP=9.52472;SAR=0;SRF=23;SRP=52.9542;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:15:12,3:12:420:3:111:-5.83747,0,-33.6159 0/0:4:4,0:4:144:0:0:0,-1.20412,-13.3134 0/0:7:7,0:7:260:0:0:0,-2.10721,-23.7563 dDocent_Contig_8365 9 . G A 144.448 . AB=0.16;ABP=53.2147;AC=0;AF=0;AN=6;AO=8;CIGAR=1X1M1X7M;DP=50;DPB=50;DPRA=0;EPP=20.3821;EPPR=74.6689;GTI=0;LEN=1;MEANALT=2;MQM=60;MQMR=60;NS=3;NUMALT=4;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=301;QR=1277;RO=33;RPL=0;RPP=20.3821;RPPR=74.6689;RPR=8;RUN=1;SAF=8;SAP=20.3821;SAR=0;SRF=33;SRP=74.6689;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|0:31:21,5,5,0,0:21:825:5,5,0,0:194,198,0,0:-9.97934,-0.365374,-66.7128,0,-51.9203,-66.3538,-16.301,-68.2179,-67.859,-84.1566,-16.301,-68.2179,-67.859,-84.1566,-84.1566 0|0:8:5,1,0,0,2:5:181:1,0,0,2:27,0,0,81:-5.2637,-4.68492,-19.1239,-6.76885,-19.425,-21.5408,-6.76885,-19.425,-21.5408,-21.5408,0,-12.7336,-14.8471,-14.8471,-14.245 0|0:11:7,2,0,2,0:7:271:2,0,2,0:80,0,81,0:-4.57442,-0.0939437,-21.7398,-6.68163,-22.3418,-28.9336,0,-15.6587,-22.2517,-21.6497,-6.68163,-22.3418,-28.9336,-22.2517,-28.9336 dDocent_Contig_8366 8 . C G 426.17 . AB=0.5;ABP=3.0103;AC=2;AF=0.333333;AN=6;AO=16;CIGAR=1X;DP=93;DPB=93;DPRA=0.262295;EPP=37.7539;EPPR=170.214;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=0.948052;PAO=0;PQA=0;PQR=0;PRO=0;QA=612;QR=2947;RO=77;RPL=0;RPP=37.7539;RPPR=170.214;RPR=16;RUN=1;SAF=16;SAP=37.7539;SAR=0;SRF=77;SRP=170.214;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:61:61,0:61:2325:0:0:0,-18.3628,-209.467 0/1:11:8,3:8:312:3:105:-6.48205,0,-25.1336 0/1:21:8,13:8:310:13:507:-39.6578,0,-21.9419 dDocent_Contig_8367 67 . A G 79.9397 . AB=0.363636;ABP=4.78696;AC=1;AF=0.166667;AN=6;AO=4;CIGAR=1X;DP=47;DPB=47;DPRA=0.611111;EPP=11.6962;EPPR=96.3836;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=142;QR=1442;RO=43;RPL=4;RPP=11.6962;RPPR=96.3836;RPR=0;RUN=1;SAF=4;SAP=11.6962;SAR=0;SRF=43;SRP=96.3836;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:27:27,0:27:949:0:0:0,-8.12781,-85.7228 0/0:9:9,0:9:285:0:0:0,-2.70927,-25.9561 0/1:11:7,4:7:208:4:142:-9.81788,0,-15.7 dDocent_Contig_8368 160 . G A 35.9893 . AB=0.15;ABP=45.5712;AC=2;AF=0.333333;AN=6;AO=6;CIGAR=1X;DP=42;DPB=42;DPRA=10;EPP=16.0391;EPPR=72.7387;GTI=0;LEN=1;MEANALT=1;MQM=31.3333;MQMR=59.7222;NS=3;NUMALT=1;ODDS=0;PAIRED=0;PAIREDR=0.944444;PAO=0;PQA=0;PQR=0;PRO=0;QA=245;QR=1452;RO=36;RPL=6;RPP=16.0391;RPPR=72.7387;RPR=0;RUN=1;SAF=0;SAP=16.0391;SAR=6;SRF=0;SRP=81.1833;SRR=36;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:31:26,5:26:1060:5:204:-5.11965,0,-86.3125 0/1:9:8,1:8:310:1:41:-0.0695246,0,-25.5472 0/0:2:2,0:2:82:0:0:0,-0.60206,-7.77968 dDocent_Contig_8369 10 . T G 468.035 . AB=0.233333;ABP=58.6;AC=1;AF=0.166667;AN=6;AO=30;CIGAR=1X;DP=359;DPB=359;DPRA=0;EPP=68.1545;EPPR=710.91;GTI=0;LEN=1;MEANALT=1.33333;MQM=59.7667;MQMR=59.3742;NS=3;NUMALT=1;ODDS=0;PAIRED=0.2;PAIREDR=0.840491;PAO=0;PQA=0;PQR=0;PRO=0;QA=1197;QR=13036;RO=326;RPL=0;RPP=68.1545;RPPR=710.91;RPR=30;RUN=1;SAF=30;SAP=68.1545;SAR=0;SRF=326;SRP=710.91;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:141:135,3:135:5425:3:121:0,-30.6665,-476.43 0/1:90:69,21:69:2726:21:838:-48.6274,0,-218.34 0/0:128:122,6:122:4885:6:238:0,-16.7377,-417.53 dDocent_Contig_8370 13 . C A 103.931 . AB=0.193548;ABP=28.2974;AC=1;AF=0.166667;AN=6;AO=6;CIGAR=1X;DP=46;DPB=46;DPRA=4.13333;EPP=16.0391;EPPR=89.8692;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=0.666667;PAIREDR=0.975;PAO=0;PQA=0;PQR=0;PRO=0;QA=232;QR=1567;RO=40;RPL=0;RPP=16.0391;RPPR=89.8692;RPR=6;RUN=1;SAF=6;SAP=16.0391;SAR=0;SRF=40;SRP=89.8692;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:31:25,6:25:996:6:232:-11.9158,0,-80.604 0/0:3:3,0:3:100:0:0:0,-0.90309,-9.32317 0/0:12:12,0:12:471:0:0:0,-3.61236,-42.7334 dDocent_Contig_8371 21 . C T 747.987 . AB=0.167969;ABP=248.149;AC=2;AF=0.333333;AN=6;AO=47;CIGAR=1X;DP=311;DPB=311;DPRA=0;EPP=105.07;EPPR=576.279;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=1857;QR=10518;RO=264;RPL=0;RPP=105.07;RPPR=576.279;RPR=47;RUN=1;SAF=47;SAP=105.07;SAR=0;SRF=264;SRP=576.279;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:231:190,41:190:7571:41:1618:-76.3199,0,-611.455 0/1:25:23,2:23:914:2:80:-0.0658253,0,-75.0296 0/0:55:51,4:51:2033:4:159:0,-1.8649,-168.459 dDocent_Contig_8372 22 . T G 277.626 . AB=0.454545;ABP=3.40511;AC=1;AF=0.166667;AN=6;AO=10;CIGAR=1X;DP=33;DPB=33;DPRA=4;EPP=24.725;EPPR=52.9542;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=395;QR=928;RO=23;RPL=0;RPP=24.725;RPPR=52.9542;RPR=10;RUN=1;SAF=10;SAP=24.725;SAR=0;SRF=23;SRP=52.9542;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:22:12,10:12:487:10:395:-29.2851,0,-37.5588 0/0:2:2,0:2:80:0:0:0,-0.60206,-7.59179 0/0:9:9,0:9:361:0:0:0,-2.70927,-32.8543 dDocent_Contig_8373 12 . C T 110.185 . AB=0.175;ABP=39.7082;AC=2;AF=0.333333;AN=6;AO=7;CIGAR=1X;DP=51;DPB=51;DPRA=1.81818;EPP=18.2106;EPPR=98.5551;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=286;QR=1772;RO=44;RPL=0;RPP=18.2106;RPPR=98.5551;RPR=7;RUN=1;SAF=7;SAP=18.2106;SAR=0;SRF=44;SRP=98.5551;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:22:17,5:17:674:5:204:-12.1214,0,-54.356 0/0:11:11,0:11:447:0:0:0,-3.31133,-40.5855 0/1:18:16,2:16:651:2:82:-2.36114,0,-53.5044 dDocent_Contig_8374 42 . G A 43.5669 . AB=0.4;ABP=3.44459;AC=1;AF=0.166667;AN=6;AO=2;CIGAR=1X;DP=66;DPB=66;DPRA=0.163934;EPP=7.35324;EPPR=141.985;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=8.67362e-19;PAIRED=1;PAIREDR=0.984375;PAO=0;PQA=0;PQR=0;PRO=0;QA=81;QR=2506;RO=64;RPL=0;RPP=7.35324;RPPR=141.985;RPR=2;RUN=1;SAF=2;SAP=7.35324;SAR=0;SRF=64;SRP=141.985;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:31:31,0:31:1230:0:0:0,-9.33193,-110.976 0/1:5:3,2:3:115:2:81:-6.18058,0,-9.21958 0/0:30:30,0:30:1161:0:0:0,-9.0309,-104.771 dDocent_Contig_8375 9 . C A 106.594 . AB=0.134831;ABP=106.094;AC=3;AF=0.5;AN=6;AO=12;CIGAR=1X;DP=89;DPB=89;DPRA=0;EPP=29.068;EPPR=170.214;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=465;QR=2966;RO=77;RPL=0;RPP=29.068;RPPR=170.214;RPR=12;RUN=1;SAF=12;SAP=29.068;SAR=0;SRF=77;SRP=170.214;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:55:49,6:49:1884:6:234:-4.87445,0,-153.246 0/1:16:13,3:13:501:3:115:-5.90841,0,-40.6215 0/1:18:15,3:15:581:3:116:-5.39916,0,-47.2144 dDocent_Contig_8376 19 . G A 690.138 . AB=0.531915;ABP=3.42611;AC=3;AF=0.5;AN=6;AO=25;CIGAR=1X;DP=47;DPB=47;DPRA=0;EPP=57.2971;EPPR=50.7827;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=972;QR=886;RO=22;RPL=0;RPP=57.2971;RPPR=50.7827;RPR=25;RUN=1;SAF=25;SAP=57.2971;SAR=0;SRF=22;SRP=50.7827;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:22:13,9:13:525:9:348:-25.0545,0,-40.9728 0/1:18:8,10:8:320:10:403:-31.2108,0,-23.7478 0/1:7:1,6:1:41:6:221:-18.1368,0,-1.98736 dDocent_Contig_8377 9 . C A 184.748 . AB=0.183333;ABP=55.2704;AC=1;AF=0.166667;AN=6;AO=11;CIGAR=1X;DP=84;DPB=84;DPRA=5;EPP=26.8965;EPPR=161.528;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=419;QR=2815;RO=73;RPL=0;RPP=26.8965;RPPR=161.528;RPR=11;RUN=1;SAF=11;SAP=26.8965;SAR=0;SRF=73;SRP=161.528;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:60:49,11:49:1885:11:419:-19.9976,0,-151.833 0/0:4:4,0:4:156:0:0:0,-1.20412,-14.4173 0/0:20:20,0:20:774:0:0:0,-6.0206,-69.988 dDocent_Contig_8378 8 . C T 54.1142 . AB=0.111111;ABP=109.412;AC=1;AF=0.166667;AN=6;AO=10;CIGAR=1X;DP=143;DPB=143;DPRA=3.47222;EPP=24.725;EPPR=291.816;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=383;QR=5085;RO=133;RPL=0;RPP=24.725;RPPR=291.816;RPR=10;RUN=1;SAF=10;SAP=24.725;SAR=0;SRF=133;SRP=291.816;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:81:72,9:72:2762:9:344:-6.9343,0,-224.376 0/0:18:18,0:18:666:0:0:0,-5.41854,-60.2657 0/0:44:43,1:43:1657:1:39:0,-9.34875,-145.493 dDocent_Contig_8379 8 . C G 478.432 . AB=0.0376106;ABP=842.409;AC=0;AF=0;AN=6;AO=17;CIGAR=3X13M;DP=452;DPB=451.875;DPRA=0;EPP=39.9253;EPPR=561.079;GTI=0;LEN=1;MEANALT=17.6667;MQM=15.1765;MQMR=60;NS=3;NUMALT=6;ODDS=0;PAIRED=0.117647;PAIREDR=0.801556;PAO=0.166667;PQA=6.83333;PQR=6.83333;PRO=0.166667;QA=251;QR=9904;RO=257;RPL=0;RPP=39.9253;RPPR=561.079;RPR=17;RUN=1;SAF=17;SAP=39.9253;SAR=0;SRF=257;SRP=561.079;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|0:220:126,3,24,3,11,9,5:126:4878:3,24,3,11,9,5:116,953,36,449,270,192:-40.546,-75.3401,-475.167,0,-397.611,-393.525,-76.9148,-474.505,-399.184,-476.741,-41.42,-439.022,-363.7,-440.595,-438.849,-59.3279,-456.919,-381.599,-458.493,-423.009,-457.349,-62.7122,-460.309,-384.988,-461.883,-426.399,-444.297,-461.943 0|0:100:62,9,3,1,0,9,0:62:2375:9,3,1,0,9,0:337,120,10,0,282,0:-1.57861,-11.0399,-203.294,-10.3455,-196.117,-204.433,-19.8995,-205.658,-204.991,-214.577,-20.2425,-206.003,-205.336,-214.878,-215.223,0,-185.775,-185.105,-194.647,-194.992,-192.283,-20.2425,-206.003,-205.336,-214.878,-215.223,-194.992,-215.223 0|0:132:69,4,2,13,1,7,10:69:2651:4,2,13,1,7,10:149,80,205,41,261,384:-10.7683,-27.4525,-243.907,-24.9457,-238.52,-242.008,-20.1524,-233.711,-231.208,-233.886,-28.1535,-241.727,-239.225,-234.415,-245.516,-10.7135,-224.293,-221.792,-216.982,-224.998,-226.276,0,-213.586,-211.084,-206.275,-214.29,-196.856,-214.665 dDocent_Contig_8380 9 . C T 136.105 . AB=0.136842;ABP=111.835;AC=2;AF=0.333333;AN=6;AO=18;CIGAR=1X;DP=197;DPB=197;DPRA=0;EPP=42.0968;EPPR=383.018;GTI=0;LEN=1;MEANALT=1.33333;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=695;QR=6751;RO=175;RPL=0;RPP=42.0968;RPPR=383.018;RPR=18;RUN=1;SAF=18;SAP=42.0968;SAR=0;SRF=175;SRP=383.018;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:102:93,5:93:3604:5:195:0,-11.9636,-306.55 0/1:45:38,7:38:1443:7:271:-11.21,0,-116.604 0/1:50:44,6:44:1704:6:229:-5.92342,0,-138.566 dDocent_Contig_8382 22 . A T 339.231 . AB=0.3;ABP=20.3821;AC=3;AF=0.5;AN=6;AO=15;CIGAR=1X;DP=50;DPB=50;DPRA=0;EPP=35.5824;EPPR=79.0118;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=588;QR=1399;RO=35;RPL=0;RPP=35.5824;RPPR=79.0118;RPR=15;RUN=1;SAF=15;SAP=35.5824;SAR=0;SRF=35;SRP=79.0118;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:24:12,12:12:487:12:465:-34.9686,0,-36.9569 0/1:8:7,1:7:268:1:41:-1.68633,0,-22.0721 0/1:18:16,2:16:644:2:82:-2.36114,0,-52.8761 dDocent_Contig_8383 21 . C A 1243.51 . AB=0.0547945;ABP=254.366;AC=1;AF=0.166667;AN=6;AO=8;CIGAR=7M2D3M1X6M;DP=146;DPB=142.105;DPRA=0;EPP=20.3821;EPPR=159.356;GTI=0;LEN=1;MEANALT=3.33333;MQM=60;MQMR=60;NS=3;NUMALT=3;ODDS=2.77556e-17;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=324;QR=2826;RO=72;RPL=0;RPP=20.3821;RPPR=159.356;RPR=8;RUN=1;SAF=8;SAP=20.3821;SAR=0;SRF=72;SRP=159.356;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|0:79:30,1,32,15:30:1181:1,32,15:41,1256,587:-94.2578,-99.9041,-196.76,0,-93.7789,-87.5304,-55.0353,-148.809,-48.9102,-147.678 0|0:24:12,1,9,2:12:460:1,9,2:40,344,75:-24.6076,-24.9233,-62.3743,0,-34.4546,-35.0416,-22.0793,-56.5339,-31.61,-59.2277 0|1:43:30,6,0,4:30:1185:6,0,4:243,0,160:-11.0089,0,-95.7022,-20.0398,-97.5084,-117.547,-6.86104,-84.3282,-104.367,-103.163 dDocent_Contig_8388 51 . C G 245.06 . AB=0.24;ABP=32.3686;AC=3;AF=0.5;AN=6;AO=12;CIGAR=1X;DP=50;DPB=50;DPRA=0;EPP=29.068;EPPR=85.5263;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=58.6579;NS=3;NUMALT=1;ODDS=0;PAIRED=0;PAIREDR=0.973684;PAO=0;PQA=0;PQR=0;PRO=0;QA=488;QR=1501;RO=38;RPL=12;RPP=29.068;RPPR=85.5263;RPR=0;RUN=1;SAF=12;SAP=29.068;SAR=0;SRF=38;SRP=85.5263;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:26:18,8:18:709:8:327:-21.9733,0,-56.309 0/1:12:10,2:10:396:2:80:-3.97943,0,-32.3847 0/1:12:10,2:10:396:2:81:-4.07337,0,-29.9292 dDocent_Contig_8389 12 . A C 191.028 . AB=0.470588;ABP=3.13803;AC=2;AF=0.333333;AN=6;AO=8;CIGAR=1X1M1X;DP=25;DPB=25;DPRA=1.0625;EPP=20.3821;EPPR=39.9253;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=0;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=300;QR=687;RO=17;RPL=0;RPP=20.3821;RPPR=39.9253;RPR=8;RUN=1;SAF=8;SAP=20.3821;SAR=0;SRF=17;SRP=39.9253;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|0:8:8,0:8:326:0:0:0,-2.40824,-29.7099 0|1:8:2,6:2:82:6:218:-17.5551,0,-5.37144 0|1:9:7,2:7:279:2:82:-5.07041,0,-22.7705 dDocent_Contig_8390 58 . C A 138.104 . 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AB=0;ABP=0;AC=6;AF=1;AN=6;AO=31;CIGAR=2X;DP=31;DPB=75.5;DPRA=0;EPP=70.3259;EPPR=0;GTI=0;LEN=1;MEANALT=1;MQM=53.7419;MQMR=0;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=0;PAO=89;PQA=2941;PQR=0;PRO=0;QA=1010;QR=0;RO=0;RPL=31;RPP=70.3259;RPPR=0;RPR=0;RUN=1;SAF=31;SAP=70.3259;SAR=0;SRF=0;SRP=0;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 1|1:23:0,23:0:0:23:749:-67.3257,-6.92369,0 1|1:4:0,4:0:0:4:134:-12.0455,-1.20412,0 1|1:4:0,4:0:0:4:127:-11.4144,-1.20412,0 dDocent_Contig_8396 56 . A T 102.231 . 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T C 551.401 . AB=0.230769;ABP=35.7494;AC=4;AF=0.666668;AN=6;AO=12;CIGAR=1X13M;DP=90;DPB=90;DPRA=0;EPP=29.068;EPPR=83.3548;GTI=0;LEN=1;MEANALT=6;MQM=60;MQMR=60;NS=3;NUMALT=7;ODDS=1.38778e-17;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=457;QR=1457;RO=37;RPL=0;RPP=29.068;RPPR=83.3548;RPR=12;RUN=1;SAF=12;SAP=29.068;SAR=0;SRF=37;SRP=83.3548;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|1:38:22,3,2,2,4,2,2,0:22:869:3,2,2,4,2,2,0:117,51,79,150,14,16,0:-5.69493,-2.67414,-73.3713,-8.33751,-70.2966,-79.3153,-6.29594,-68.2643,-73.9078,-77.2835,0,-61.9855,-67.6297,-65.5971,-70.4032,-12.1523,-74.0941,-79.737,-77.7049,-71.4276,-83.1118,-11.9887,-73.9312,-79.5741,-77.542,-71.2647,-83.3713,-82.9489,-12.3176,-74.2744,-79.9174,-77.8856,-71.6073,-83.7138,-83.551,-83.8954 1|1:18:2,5,1,7,0,0,0,3:2:80:5,1,7,0,0,0,3:190,38,274,0,0,0,113:-30.6317,-15.6578,-20.7454,-28.1174,-19.1345,-34.4086,-8.98076,0,-12.4585,-13.4675,-31.2338,-22.2505,-34.7096,-15.5747,-37.8259,-31.2338,-22.2505,-34.7096,-15.5747,-37.8259,-37.8259,-31.2338,-22.2505,-34.7096,-15.5747,-37.8259,-37.8259,-37.8259,-21.9761,-12.9944,-25.4523,-6.31805,-28.5684,-28.5684,-28.5684,-27.6653 0|1:34:13,4,0,3,0,0,1,9:13:508:4,0,3,0,0,1,9:158,0,118,0,0,8,344:-24.336,-15.2371,-55.8168,-28.2494,-57.021,-70.0266,-18.8475,-47.6222,-60.6285,-59.7254,-28.2494,-57.021,-70.0266,-60.6285,-70.0266,-28.2494,-57.021,-70.0266,-60.6285,-70.0266,-70.0266,-28.0839,-56.8513,-69.8558,-60.4585,-69.8558,-69.8558,-69.5547,0,-28.7869,-41.7954,-32.3958,-41.7954,-41.7954,-41.6279,-39.0862 dDocent_Contig_8399 88 . A C 123.264 . AB=0.318182;ABP=9.32731;AC=2;AF=0.333333;AN=6;AO=7;CIGAR=1X;DP=36;DPB=36;DPRA=0.785714;EPP=18.2106;EPPR=65.983;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=0.857143;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=242;QR=1014;RO=29;RPL=7;RPP=18.2106;RPPR=65.983;RPR=0;RUN=1;SAF=7;SAP=18.2106;SAR=0;SRF=29;SRP=65.983;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:14:14,0:14:486:0:0:0,-4.21442,-44.0687 0/1:7:5,2:5:181:2:72:-4.72943,0,-14.5364 0/1:15:10,5:10:347:5:170:-11.1195,0,-27.0497 dDocent_Contig_8400 107 . N A 189.683 . AB=0;ABP=0;AC=2;AF=1;AN=2;AO=6;CIGAR=1X;DP=6;DPB=6;DPRA=0;EPP=16.0391;EPPR=0;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=0;NS=1;NUMALT=1;ODDS=8.76405;PAIRED=1;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=207;QR=0;RO=0;RPL=0;RPP=16.0391;RPPR=0;RPR=6;RUN=1;SAF=0;SAP=16.0391;SAR=6;SRF=0;SRP=0;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL ./.:.:.:.:.:.:.:. 1/1:6:0,6:0:0:6:207:-18.9682,-1.80618,0 ./.:.:.:.:.:.:.:. dDocent_Contig_8402 10 . G A 239.17 . AB=0.37037;ABP=6.95112;AC=2;AF=0.333333;AN=6;AO=10;CIGAR=1X;DP=33;DPB=33;DPRA=2.25;EPP=24.725;EPPR=52.9542;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=0.869565;PAO=0;PQA=0;PQR=0;PRO=0;QA=387;QR=927;RO=23;RPL=0;RPP=24.725;RPPR=52.9542;RPR=10;RUN=1;SAF=10;SAP=24.725;SAR=0;SRF=23;SRP=52.9542;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:15:9,6:9:364:6:223:-15.9023,0,-28.6084 0/0:6:6,0:6:241:0:0:0,-1.80618,-22.0663 0/1:12:8,4:8:322:4:164:-11.5375,0,-25.7349 dDocent_Contig_8406 25 . G T 339.521 . AB=0.857143;ABP=18.5208;AC=1;AF=0.166667;AN=6;AO=15;CIGAR=1X;DP=68;DPB=68;DPRA=1.92857;EPP=35.5824;EPPR=93.5156;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=54.1321;NS=3;NUMALT=1;ODDS=3.46945e-18;PAIRED=0;PAIREDR=0.867925;PAO=0;PQA=0;PQR=0;PRO=0;QA=538;QR=2131;RO=53;RPL=0;RPP=35.5824;RPPR=118.098;RPR=15;RUN=1;SAF=0;SAP=35.5824;SAR=15;SRF=50;SRP=93.5156;SRR=3;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:40:37,3:37:1495:3:109:0,-1.8732,-111.364 0/1:14:2,12:2:71:12:429:-34.7327,0,-0.970022 0/0:14:14,0:14:565:0:0:0,-4.21442,-51.1914 dDocent_Contig_8407 177 . C A 637.583 . AB=0.329114;ABP=23.0483;AC=3;AF=0.5;AN=6;AO=26;CIGAR=1X;DP=79;DPB=79;DPRA=0;EPP=59.4686;EPPR=115.927;GTI=0;LEN=1;MEANALT=1.33333;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=1023;QR=2024;RO=52;RPL=26;RPP=59.4686;RPPR=115.927;RPR=0;RUN=1;SAF=0;SAP=59.4686;SAR=26;SRF=0;SRP=115.927;SRR=52;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:52:39,13:39:1536:13:501:-29.7722,0,-122.827 0/1:12:5,6:5:191:6:237:-18,0,-13.8572 0/1:15:8,7:8:297:7:285:-21.509,0,-22.5613 dDocent_Contig_8408 10 . G A 41.6962 . AB=0.16;ABP=28.1125;AC=2;AF=0.333333;AN=6;AO=4;CIGAR=1X;DP=27;DPB=27;DPRA=6.25;EPP=11.6962;EPPR=52.9542;GTI=0;LEN=1;MEANALT=1;MQM=53.25;MQMR=58.3043;NS=3;NUMALT=1;ODDS=1.73472e-18;PAIRED=0;PAIREDR=0.956522;PAO=0;PQA=0;PQR=0;PRO=0;QA=161;QR=915;RO=23;RPL=0;RPP=11.6962;RPPR=52.9542;RPR=4;RUN=1;SAF=4;SAP=11.6962;SAR=0;SRF=23;SRP=52.9542;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:12:10,2:10:404:2:81:-4.04129,0,-33.1077 0/1:13:11,2:11:436:2:80:-3.64626,0,-34.565 0/0:2:2,0:2:75:0:0:0,-0.60206,-7.1188 dDocent_Contig_8409 27 . T G 1029.59 . AB=0.29932;ABP=54.4314;AC=3;AF=0.5;AN=6;AO=44;CIGAR=1X2M;DP=147;DPB=147;DPRA=0;EPP=98.5551;EPPR=200.614;GTI=0;LEN=1;MEANALT=1.33333;MQM=60;MQMR=60;NS=3;NUMALT=2;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=1650;QR=3399;RO=91;RPL=0;RPP=98.5551;RPPR=200.614;RPR=44;RUN=1;SAF=44;SAP=98.5551;SAR=0;SRF=91;SRP=200.614;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|1:83:46,12,25:46:1739:12,25:468,943:-63.4203,-38.7972,-177.73,0,-104.067,-135.01 0|1:25:18,0,7:18:680:0,7:0,273:-17.4109,-22.8295,-78.5519,0,-56.1087,-54.0014 0|1:39:27,0,12:27:980:0,12:0,434:-27.6508,-35.7786,-115.79,0,-80.3733,-76.761 dDocent_Contig_8410 10 . G A 552.85 . AB=0.342857;ABP=10.5174;AC=4;AF=0.666667;AN=6;AO=19;CIGAR=1X;DP=42;DPB=42;DPRA=0;EPP=44.2683;EPPR=52.9542;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=758;QR=922;RO=23;RPL=0;RPP=44.2683;RPPR=52.9542;RPR=19;RUN=1;SAF=19;SAP=44.2683;SAR=0;SRF=23;SRP=52.9542;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:27:18,9:18:717:9:352:-23.9102,0,-56.7251 1/1:7:0,7:0:0:7:284:-25.9334,-2.10721,0 0/1:8:5,3:5:205:3:122:-8.96425,0,-16.4268 dDocent_Contig_8411 11 . T G 1044.6 . AB=0.136546;ABP=574.413;AC=3;AF=0.5;AN=6;AO=68;CIGAR=1X1M;DP=498;DPB=498;DPRA=0;EPP=150.67;EPPR=684.292;GTI=0;LEN=1;MEANALT=4.66667;MQM=54.2059;MQMR=56.287;NS=3;NUMALT=2;ODDS=0;PAIRED=0.779412;PAIREDR=0.797101;PAO=0;PQA=0;PQR=0;PRO=0;QA=2539;QR=13695;RO=345;RPL=0;RPP=150.67;RPPR=752.168;RPR=68;RUN=1;SAF=68;SAP=150.67;SAR=0;SRF=337;SRP=684.292;SRR=8;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|1:208:144,12,36:144:5745:12,36:485,1338:-64.5694,-75.5023,-527.256,0,-422.953,-444.536 0|1:176:110,32,24:110:4326:32,24:1261,897:-43.4083,0,-331.422,-4.15384,-268.706,-338.024 0|1:114:91,9,8:91:3624:9,8:361,304:-0.534751,0,-289.096,-3.43423,-267.308,-292.829 dDocent_Contig_8412 39 . C T 259.053 . AB=0.285714;ABP=19.7617;AC=3;AF=0.5;AN=6;AO=12;CIGAR=1X;DP=42;DPB=42;DPRA=0;EPP=29.068;EPPR=68.1545;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=477;QR=1194;RO=30;RPL=0;RPP=29.068;RPPR=68.1545;RPR=12;RUN=1;SAF=12;SAP=29.068;SAR=0;SRF=30;SRP=68.1545;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:20:16,4:16:649:4:154:-8.21177,0,-52.7229 0/1:7:4,3:4:138:3:119:-8.9878,0,-10.6496 0/1:15:10,5:10:407:5:204:-14.2286,0,-32.4751 dDocent_Contig_8413 117 . G A 215.771 . AB=0.233333;ABP=40.0701;AC=3;AF=0.5;AN=6;AO=14;CIGAR=1X;DP=60;DPB=60;DPRA=0;EPP=33.4109;EPPR=102.898;GTI=0;LEN=1;MEANALT=1;MQM=53.5714;MQMR=59.9565;NS=3;NUMALT=1;ODDS=3.46945e-18;PAIRED=0;PAIREDR=0.630435;PAO=0;PQA=0;PQR=0;PRO=0;QA=494;QR=1570;RO=46;RPL=0;RPP=33.4109;RPPR=102.898;RPR=14;RUN=1;SAF=0;SAP=33.4109;SAR=14;SRF=0;SRP=102.898;SRR=46;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:25:22,3:22:773:3:109:-2.56981,0,-62.3646 0/1:12:8,4:8:279:4:141:-9.31623,0,-21.8345 0/1:23:16,7:16:518:7:244:-15.1766,0,-40.0012 dDocent_Contig_8414 7 . T C 1001.38 . AB=0.300699;ABP=52.3468;AC=3;AF=0.5;AN=6;AO=43;CIGAR=1X;DP=143;DPB=143;DPRA=0;EPP=96.3836;EPPR=220.158;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=0.98;PAO=0;PQA=0;PQR=0;PRO=0;QA=1641;QR=3812;RO=100;RPL=0;RPP=96.3836;RPPR=220.158;RPR=43;RUN=1;SAF=43;SAP=96.3836;SAR=0;SRF=100;SRP=220.158;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:65:42,23:42:1606:23:883:-60.2206,0,-125.237 0/1:33:20,13:20:747:13:497:-35.1428,0,-57.6191 0/1:45:38,7:38:1459:7:261:-10.2975,0,-118.042 dDocent_Contig_8415 20 . A C 219.288 . AB=0.285714;ABP=16.9698;AC=3;AF=0.5;AN=6;AO=10;CIGAR=1X;DP=35;DPB=35;DPRA=0;EPP=24.725;EPPR=57.2971;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=409;QR=1017;RO=25;RPL=0;RPP=24.725;RPPR=57.2971;RPR=10;RUN=1;SAF=10;SAP=24.725;SAR=0;SRF=25;SRP=57.2971;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:19:14,5:14:568:5:205:-13.1154,0,-45.743 0/1:5:2,3:2:82:3:122:-9.86734,0,-6.27453 0/1:11:9,2:9:367:2:82:-4.46835,0,-30.0839 dDocent_Contig_8416 31 . A G 1726.74 . AB=0.22449;ABP=67.6227;AC=6;AF=1;AN=6;AO=22;CIGAR=1X7M;DP=98;DPB=98;DPRA=0;EPP=50.7827;EPPR=31.2394;GTI=0;LEN=1;MEANALT=3.33333;MQM=60;MQMR=60;NS=3;NUMALT=4;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=852;QR=499;RO=13;RPL=0;RPP=50.7827;RPPR=31.2394;RPR=22;RUN=1;SAF=22;SAP=50.7827;SAR=0;SRF=13;SRP=31.2394;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 1|1:55:6,9,29,0,11:6:239:9,29,0,11:359,1125,0,449:-108.025,-88.8377,-105.81,-17.3867,-16.1045,-28.3478,-109.831,-108.52,-37.0777,-129.515,-72.7746,-71.4683,0,-92.4603,-89.149 1|1:25:7,0,9,2,7:7:260:0,9,2,7:0,356,75,268:-27.9211,-30.0283,-51.3003,-0.723256,-21.9957,-19.2865,-23.8865,-45.1575,-15.8525,-44.5555,-8.04067,-29.3095,0,-23.1671,-27.2023 1|1:18:0,4,9,1,4:0:0:4,9,1,4:160,363,28,135:-42.2187,-29.9721,-28.768,-12.2683,0,-9.55901,-40.0056,-27.7607,-10.0579,-39.7046,-31.2949,-19.0527,-1.34153,-29.0843,-30.0908 dDocent_Contig_8417 163 . C A 237.116 . AB=0.409091;ABP=4.58955;AC=1;AF=0.166667;AN=6;AO=9;CIGAR=1X;DP=30;DPB=30;DPRA=5.5;EPP=22.5536;EPPR=48.6112;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=350;QR=795;RO=21;RPL=9;RPP=22.5536;RPPR=48.6112;RPR=0;RUN=1;SAF=0;SAP=22.5536;SAR=9;SRF=0;SRP=48.6112;SRR=21;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:22:13,9:13:485:9:350:-25.2341,0,-37.3548 0/0:2:2,0:2:78:0:0:0,-0.60206,-7.4033 0/0:6:6,0:6:232:0:0:0,-1.80618,-21.2484 dDocent_Contig_8418 31 . A T 93.7433 . AB=0.227273;ABP=17.2236;AC=2;AF=0.333333;AN=6;AO=5;CIGAR=1X;DP=27;DPB=27;DPRA=2.2;EPP=13.8677;EPPR=50.7827;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=1.73472e-18;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=200;QR=864;RO=22;RPL=0;RPP=13.8677;RPPR=50.7827;RPR=5;RUN=1;SAF=5;SAP=13.8677;SAR=0;SRF=22;SRP=50.7827;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:13:9,4:9:354:4:160:-10.87,0,-28.3031 0/1:9:8,1:8:317:1:40:-1.28641,0,-26.1851 0/0:5:5,0:5:193:0:0:0,-1.50515,-17.7376 dDocent_Contig_8419 17 . G A 133.226 . AB=0.625;ABP=4.09604;AC=1;AF=0.166667;AN=6;AO=6;CIGAR=1X;DP=71;DPB=71;DPRA=3.05;EPP=16.0391;EPPR=144.156;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=0.666667;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=232;QR=2499;RO=65;RPL=0;RPP=16.0391;RPPR=144.156;RPR=6;RUN=1;SAF=6;SAP=16.0391;SAR=0;SRF=65;SRP=144.156;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:53:52,1:52:1972:1:41:0,-11.86,-173.581 0/1:8:3,5:3:119:5:191:-15.1465,0,-8.68626 0/0:10:10,0:10:408:0:0:0,-3.0103,-37.0806 dDocent_Contig_8421 9 . C T 81.3525 . AB=0.166667;ABP=43.5445;AC=3;AF=0.5;AN=6;AO=7;CIGAR=2X;DP=42;DPB=42;DPRA=0;EPP=18.2106;EPPR=76.8404;GTI=0;LEN=1;MEANALT=1.33333;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=279;QR=1325;RO=34;RPL=0;RPP=18.2106;RPPR=76.8404;RPR=7;RUN=1;SAF=7;SAP=18.2106;SAR=0;SRF=34;SRP=76.8404;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|1:20:16,4:16:624:4:159:-8.67173,0,-50.4749 0|1:4:3,1:3:120:1:40:-2.79156,0,-9.98378 0|1:18:15,2:15:581:2:80:-2.06812,0,-47.1041 dDocent_Contig_8422 19 . T C 635.811 . AB=0.0833333;ABP=39.2015;AC=0;AF=0;AN=6;AO=2;CIGAR=1X3M1X;DP=57;DPB=57.4;DPRA=0;EPP=7.35324;EPPR=44.2683;GTI=0;LEN=1;MEANALT=3;MQM=60;MQMR=60;NS=3;NUMALT=4;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=80;QR=733;RO=19;RPL=0;RPP=7.35324;RPPR=44.2683;RPR=2;RUN=1;SAF=2;SAP=7.35324;SAR=0;SRF=19;SRP=44.2683;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|0:24:9,2,2,0,11:9:346:2,2,0,11:80,78,0,430:-32.6314,-28.7492,-56.5453,-28.9293,-50.7356,-56.7248,-35.3406,-57.1474,-57.3268,-63.7385,0,-21.801,-21.9814,-28.3934,-25.0821 0|0:18:7,0,6,0,5:7:268:0,6,0,5:0,241,0,196:-17.7569,-19.8641,-41.8482,0,-21.9843,-20.1781,-19.8641,-41.8482,-21.9843,-41.8482,-3.75043,-25.73,-5.86242,-25.73,-24.2248 0|0:15:3,0,3,2,6:3:119:0,3,2,6:0,110,79,238:-18.6943,-19.5974,-29.3949,-10.6163,-20.4124,-19.5093,-13.0953,-22.8933,-13.9117,-22.2912,0,-9.80102,-0.822456,-3.29769,-7.99484 dDocent_Contig_8424 161 . T A 86.957 . AB=0.137255;ABP=61.2994;AC=1;AF=0.166667;AN=6;AO=7;CIGAR=1X;DP=63;DPB=63;DPRA=8.5;EPP=18.2106;EPPR=124.613;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=280;QR=2100;RO=56;RPL=0;RPP=18.2106;RPPR=124.613;RPR=7;RUN=1;SAF=0;SAP=18.2106;SAR=7;SRF=0;SRP=124.613;SRR=56;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:51:44,7:44:1683:7:280:-10.2185,0,-136.325 0/0:5:5,0:5:170:0:0:0,-1.50515,-15.631 0/0:7:7,0:7:247:0:0:0,-2.10721,-22.5643 dDocent_Contig_8425 20 . T A 1538.43 . AB=0.238754;ABP=174.331;AC=3;AF=0.5;AN=6;AO=69;CIGAR=1X;DP=289;DPB=289;DPRA=0;EPP=152.842;EPPR=421.868;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=59.2955;NS=3;NUMALT=1;ODDS=1.38778e-17;PAIRED=0.956522;PAIREDR=0.940909;PAO=0;PQA=0;PQR=0;PRO=0;QA=2727;QR=8662;RO=220;RPL=0;RPP=152.842;RPPR=480.734;RPR=69;RUN=1;SAF=69;SAP=152.842;SAR=0;SRF=213;SRP=421.868;SRR=7;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:158:104,54:104:4127:54:2124:-143.791,0,-322.188 0/1:58:52,6:52:2031:6:239:-4.42527,0,-165.535 0/1:73:64,9:64:2504:9:364:-11.1492,0,-201.152 dDocent_Contig_8426 42 . C T 156.013 . AB=0.35;ABP=6.91895;AC=2;AF=0.333333;AN=6;AO=10;CIGAR=1X;DP=58;DPB=58;DPRA=0;EPP=24.725;EPPR=107.241;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=393;QR=1918;RO=48;RPL=0;RPP=24.725;RPPR=107.241;RPR=10;RUN=1;SAF=10;SAP=24.725;SAR=0;SRF=48;SRP=107.241;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:38:35,3:35:1391:3:122:0,-0.066647,-114.077 0/1:7:4,3:4:164:3:119:-8.9878,0,-13.0427 0/1:13:9,4:9:363:4:152:-10.1351,0,-29.1209 dDocent_Contig_8427 9 . C A 195.221 . AB=0.243902;ABP=26.3669;AC=2;AF=0.333333;AN=6;AO=10;CIGAR=1X;DP=55;DPB=55;DPRA=1.46429;EPP=24.725;EPPR=94.2121;GTI=0;LEN=1;MEANALT=1.5;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=386;QR=1589;RO=42;RPL=0;RPP=24.725;RPPR=94.2121;RPR=10;RUN=1;SAF=10;SAP=24.725;SAR=0;SRF=42;SRP=94.2121;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:24:17,6:17:631:6:232:-13.929,0,-49.7973 0/1:17:13,4:13:501:4:154:-9.11595,0,-40.3209 0/0:14:12,0:12:457:0:0:0,-3.61236,-41.0867 dDocent_Contig_8429 18 . C T 684.046 . AB=0.14433;ABP=109.592;AC=3;AF=0.5;AN=6;AO=14;CIGAR=1X2M1X1M2X;DP=97;DPB=97;DPRA=0;EPP=33.4109;EPPR=85.5263;GTI=0;LEN=1;MEANALT=3.66667;MQM=45.9286;MQMR=60;NS=3;NUMALT=3;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=557;QR=1519;RO=38;RPL=0;RPP=33.4109;RPPR=85.5263;RPR=14;RUN=1;SAF=14;SAP=33.4109;SAR=0;SRF=38;SRP=85.5263;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|1:38:15,16,2,5:15:606:16,2,5:634,79,202:-36.6781,0,-45.2201,-40.1972,-49.047,-89.5852,-25.9321,-34.7909,-74.9412,-74.437 0|1:35:13,8,5,7:13:515:8,5,7:306,191,275:-19.3254,0,-40.0463,-20.7564,-39.9654,-61.658,-3.5906,-22.8229,-43.5469,-43.9303 0|1:24:10,4,8,2:10:398:4,8,2:159,311,80:-17.924,-10.8038,-42.4007,0,-22.6891,-30.3976,-14.3329,-37.0112,-26.2125,-46.5374 dDocent_Contig_8430 29 . T A 448.318 . AB=0.414634;ABP=5.60547;AC=3;AF=0.5;AN=6;AO=17;CIGAR=1X;DP=41;DPB=41;DPRA=0;EPP=39.9253;EPPR=55.1256;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=0.958333;PAO=0;PQA=0;PQR=0;PRO=0;QA=684;QR=964;RO=24;RPL=0;RPP=39.9253;RPPR=55.1256;RPR=17;RUN=1;SAF=17;SAP=39.9253;SAR=0;SRF=24;SRP=55.1256;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:18:7,11:7:284:11:441:-34.6256,0,-20.5152 0/1:9:7,2:7:274:2:81:-4.97646,0,-22.3174 0/1:14:10,4:10:406:4:162:-10.7525,0,-32.6856 dDocent_Contig_8431 31 . G A 2739.58 . AB=0.838384;ABP=101.472;AC=4;AF=0.666667;AN=6;AO=85;CIGAR=1X;DP=101;DPB=101;DPRA=0;EPP=187.585;EPPR=37.7539;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=3405;QR=632;RO=16;RPL=0;RPP=187.585;RPPR=37.7539;RPR=85;RUN=1;SAF=85;SAP=187.585;SAR=0;SRF=16;SRP=37.7539;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:61:10,51:10:393:51:2048:-166.145,0,-17.3615 1/1:2:0,2:0:0:2:79:-7.49763,-0.60206,0 0/1:38:6,32:6:239:32:1278:-103.838,0,-10.4452 dDocent_Contig_8432 54 . C T 119.243 . AB=0.214286;ABP=22.8638;AC=2;AF=0.333333;AN=6;AO=8;CIGAR=1X;DP=65;DPB=65;DPRA=0;EPP=20.3821;EPPR=126.784;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=0.75;PAIREDR=0.491228;PAO=0;PQA=0;PQR=0;PRO=0;QA=321;QR=2295;RO=57;RPL=8;RPP=20.3821;RPPR=126.784;RPR=0;RUN=1;SAF=8;SAP=20.3821;SAR=0;SRF=57;SRP=126.784;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:37:35,2:35:1400:2:80:0,-3.54632,-118.66 0/1:12:11,1:11:448:1:39:-0.284205,0,-37.0634 0/1:16:11,5:11:447:5:202:-13.7454,0,-35.769 dDocent_Contig_8433 7 . T C 36.6839 . AB=0.157895;ABP=22.325;AC=1;AF=0.166667;AN=6;AO=3;CIGAR=1X;DP=37;DPB=37;DPRA=2.11111;EPP=9.52472;EPPR=76.8404;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=117;QR=1300;RO=34;RPL=0;RPP=9.52472;RPPR=76.8404;RPR=3;RUN=1;SAF=3;SAP=9.52472;SAR=0;SRF=34;SRP=76.8404;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:19:16,3:16:618:3:117:-5.19081,0,-50.2404 0/0:2:2,0:2:70:0:0:0,-0.60206,-6.64675 0/0:16:16,0:16:612:0:0:0,-4.81648,-55.42 dDocent_Contig_8435 119 . G T 79.5066 . AB=0.444444;ABP=3.25157;AC=1;AF=0.166667;AN=6;AO=5;CIGAR=1X;DP=25;DPB=25;DPRA=0.541667;EPP=13.8677;EPPR=46.4397;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=8.67362e-19;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=142;QR=683;RO=20;RPL=0;RPP=13.8677;RPPR=46.4397;RPR=5;RUN=1;SAF=0;SAP=13.8677;SAR=5;SRF=0;SRP=46.4397;SRR=20;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:12:12,0:12:419:0:0:0,-3.61236,-38.0434 0/0:4:3,1:3:88:1:7:0,-0.504122,-7.5101 0/1:9:5,4:5:176:4:135:-9.77411,0,-13.476 dDocent_Contig_8437 9 . C T 30.3928 . AB=0.148148;ABP=32.0437;AC=2;AF=0.333333;AN=6;AO=5;CIGAR=1X;DP=110;DPB=110;DPRA=0;EPP=13.8677;EPPR=231.015;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=184;QR=4059;RO=105;RPL=0;RPP=13.8677;RPPR=231.015;RPR=5;RUN=1;SAF=5;SAP=13.8677;SAR=0;SRF=105;SRP=231.015;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:83:82,1:82:3175:1:30:0,-21.9859,-282.896 0/1:7:6,1:6:232:1:38:-1.69006,0,-19.1417 0/1:20:17,3:17:652:3:116:-4.7971,0,-52.9953 dDocent_Contig_8438 25 . G A 80.4001 . AB=0.277778;ABP=10.7311;AC=2;AF=0.333333;AN=6;AO=5;CIGAR=1X;DP=33;DPB=33;DPRA=0.6;EPP=13.8677;EPPR=63.8115;GTI=0;LEN=1;MEANALT=1;MQM=53.8;MQMR=58.7143;NS=3;NUMALT=1;ODDS=0;PAIRED=0.8;PAIREDR=0.857143;PAO=0;PQA=0;PQR=0;PRO=0;QA=189;QR=1121;RO=28;RPL=0;RPP=13.8677;RPPR=63.8115;RPR=5;RUN=1;SAF=5;SAP=13.8677;SAR=0;SRF=28;SRP=63.8115;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:14:12,2:12:480:2:71:-1.36496,0,-39.3356 0/1:4:1,3:1:38:3:118:-9.7986,0,-2.59315 0/0:15:15,0:15:603:0:0:0,-4.51545,-54.484 dDocent_Contig_8439 22 . C T 82.7069 . AB=0.230769;ABP=11.1951;AC=1;AF=0.166667;AN=6;AO=3;CIGAR=8M1I1M1X;DP=48;DPB=48.5;DPRA=6.5;EPP=9.52472;EPPR=83.3548;GTI=0;LEN=1;MEANALT=2;MQM=60;MQMR=60;NS=3;NUMALT=3;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=122;QR=1446;RO=37;RPL=0;RPP=9.52472;RPPR=83.3548;RPR=3;RUN=1;SAF=3;SAP=9.52472;SAR=0;SRF=37;SRP=83.3548;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|0:33:28,1,4,0:28:1095:1,4,0:38,153,0:-4.12826,-9.44108,-99.1736,0,-86.9205,-88.8326,-12.5571,-99.4746,-90.0367,-102.591 0|0:2:1,0,0,0:1:40:0,0,0:0,0,0:0,-0.30103,-3.63094,-0.30103,-3.63094,-3.63094,-0.30103,-3.63094,-3.63094,-3.63094 0|1:13:8,2,0,3:8:311:2,0,3:79,0,122:-7.66193,-3.57383,-28.5154,-10.0702,-29.1174,-35.6186,0,-19.0493,-25.5515,-24.6485 dDocent_Contig_8440 95 . G A 429.147 . AB=0.444444;ABP=3.9754;AC=4;AF=0.666667;AN=6;AO=18;CIGAR=1X;DP=38;DPB=38;DPRA=0;EPP=42.0968;EPPR=38.1882;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=59.6;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=0.95;PAO=0;PQA=0;PQR=0;PRO=0;QA=625;QR=665;RO=20;RPL=18;RPP=42.0968;RPPR=46.4397;RPR=0;RUN=1;SAF=18;SAP=42.0968;SAR=0;SRF=19;SRP=38.1882;SRR=1;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:23:11,12:11:383:12:415:-30.7583,0,-27.8812 1/1:2:0,2:0:0:2:70:-6.6474,-0.60206,0 0/1:13:9,4:9:282:4:140:-9.03154,0,-21.7659 dDocent_Contig_8441 26 . A C 115.488 . AB=0;ABP=0;AC=2;AF=0.333333;AN=6;AO=3;CIGAR=1X;DP=46;DPB=46;DPRA=0.139535;EPP=9.52472;EPPR=96.3836;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=122;QR=1708;RO=43;RPL=0;RPP=9.52472;RPPR=96.3836;RPR=3;RUN=1;SAF=3;SAP=9.52472;SAR=0;SRF=43;SRP=96.3836;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:20:20,0:20:792:0:0:0,-6.0206,-71.5977 1/1:3:0,3:0:0:3:122:-11.3725,-0.90309,0 0/0:23:23,0:23:916:0:0:0,-6.92369,-82.7466 dDocent_Contig_8442 9 . C A 682.482 . AB=0.267241;ABP=57.5966;AC=3;AF=0.5;AN=6;AO=31;CIGAR=1X;DP=116;DPB=116;DPRA=0;EPP=70.3259;EPPR=176.728;GTI=0;LEN=1;MEANALT=2.33333;MQM=60;MQMR=58.175;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=0.9875;PAO=0;PQA=0;PQR=0;PRO=0;QA=1186;QR=3046;RO=80;RPL=0;RPP=70.3259;RPPR=176.728;RPR=31;RUN=1;SAF=31;SAP=70.3259;SAR=0;SRF=80;SRP=176.728;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:54:35,17:35:1333:17:661:-43.784,0,-104.157 0/1:30:18,11:18:690:11:408:-27.9446,0,-53.3149 0/1:32:27,3:27:1023:3:117:-1.48982,0,-82.7091 dDocent_Contig_8443 25 . G A 1667.46 . AB=0.743243;ABP=41.0404;AC=3;AF=0.5;AN=6;AO=55;CIGAR=1X;DP=74;DPB=74;DPRA=0;EPP=122.441;EPPR=44.2683;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=2151;QR=747;RO=19;RPL=0;RPP=122.441;RPPR=44.2683;RPR=55;RUN=1;SAF=55;SAP=122.441;SAR=0;SRF=19;SRP=44.2683;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:45:10,35:10:394:35:1369:-109.919,0,-22.2699 0/1:24:7,17:7:272:17:669:-53.3163,0,-17.6215 0/1:5:2,3:2:81:3:113:-9.03288,0,-6.18058 dDocent_Contig_8444 12 . A G 710.235 . AB=0.283019;ABP=46.3578;AC=3;AF=0.5;AN=6;AO=30;CIGAR=1X;DP=106;DPB=106;DPRA=0;EPP=68.1545;EPPR=168.042;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=6.93889e-18;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=1193;QR=3009;RO=76;RPL=0;RPP=68.1545;RPPR=168.042;RPR=30;RUN=1;SAF=30;SAP=68.1545;SAR=0;SRF=76;SRP=168.042;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:64:48,16:48:1885:16:628:-37.5888,0,-150.58 0/1:6:4,2:4:160:2:82:-5.9735,0,-12.9772 0/1:36:24,12:24:964:12:483:-32.9841,0,-76.2218 dDocent_Contig_8445 16 . T C 405.805 . AB=0.4;ABP=6.48466;AC=4;AF=0.666667;AN=6;AO=16;CIGAR=1X2M;DP=40;DPB=40;DPRA=0;EPP=37.7539;EPPR=42.0968;GTI=0;LEN=1;MEANALT=2;MQM=47.4375;MQMR=60;NS=3;NUMALT=2;ODDS=0;PAIRED=0;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=609;QR=725;RO=18;RPL=0;RPP=37.7539;RPPR=42.0968;RPR=16;RUN=1;SAF=16;SAP=37.7539;SAR=0;SRF=18;SRP=42.0968;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|1:21:11,2,8:11:443:2,8:81,299:-20.1322,-18.2413,-54.177,0,-31.3825,-34.1714 1|1:3:0,1,2:0:0:1,2:40,81:-8.93443,-6.95719,-6.65616,-2.28206,0,-1.68 0|1:16:7,3,6:7:282:3,6:118,229:-16.6521,-12.7379,-35.0906,0,-17.3259,-21.5383 dDocent_Contig_8446 21 . T A 116.114 . AB=0.24;ABP=17.6895;AC=2;AF=0.5;AN=4;AO=6;CIGAR=1X;DP=25;DPB=25;DPRA=0;EPP=16.0391;EPPR=44.2683;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=2;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=245;QR=739;RO=19;RPL=0;RPP=16.0391;RPPR=44.2683;RPR=6;RUN=1;SAF=6;SAP=16.0391;SAR=0;SRF=19;SRP=44.2683;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:10:8,2:8:305:2:81:-4.67543,0,-24.7963 ./.:.:.:.:.:.:.:. 0/1:15:11,4:11:434:4:164:-10.6344,0,-34.8978 dDocent_Contig_8447 160 . T C 36.6055 . AB=0.285714;ABP=5.80219;AC=1;AF=0.166667;AN=6;AO=3;CIGAR=1X;DP=73;DPB=73;DPRA=1.52778;EPP=9.52472;EPPR=152.842;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=0.333333;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=120;QR=2710;RO=69;RPL=3;RPP=9.52472;RPPR=152.842;RPR=0;RUN=1;SAF=0;SAP=9.52472;SAR=3;SRF=0;SRP=152.842;SRR=69;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:48:47,1:47:1871:1:40:0,-10.4538,-164.603 0/1:7:5,2:5:195:2:80:-5.48436,0,-15.8145 0/0:18:17,0:17:644:0:0:0,-5.11751,-58.0976 dDocent_Contig_8448 46 . A G 41.373 . AB=0.116667;ABP=79.5909;AC=2;AF=0.333333;AN=6;AO=8;CIGAR=1X;DP=97;DPB=97;DPRA=0;EPP=20.3821;EPPR=196.271;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=3.46945e-18;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=317;QR=3491;RO=89;RPL=0;RPP=20.3821;RPPR=196.271;RPR=8;RUN=1;SAF=8;SAP=20.3821;SAR=0;SRF=89;SRP=196.271;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:54:48,6:48:1861:6:238:-5.53742,0,-151.448 0/1:6:5,1:5:204:1:38:-1.99109,0,-16.9379 0/0:37:36,1:36:1426:1:41:0,-7.04354,-124.5 dDocent_Contig_8450 17 . C T 580.821 . AB=0.294118;ABP=34.305;AC=3;AF=0.5;AN=6;AO=25;CIGAR=1X;DP=85;DPB=85;DPRA=0;EPP=57.2971;EPPR=133.299;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=6.93889e-18;PAIRED=1;PAIREDR=0.716667;PAO=0;PQA=0;PQR=0;PRO=0;QA=979;QR=2379;RO=60;RPL=0;RPP=57.2971;RPPR=133.299;RPR=25;RUN=1;SAF=25;SAP=57.2971;SAR=0;SRF=60;SRP=133.299;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:42:31,11:31:1238:11:426:-26.0437,0,-99.0491 0/1:23:17,6:17:680:6:239:-14.9607,0,-54.6067 0/1:20:12,8:12:461:8:314:-22.6006,0,-35.8121 dDocent_Contig_8451 22 . T C 703.455 . AB=0.628571;ABP=8.03571;AC=4;AF=0.666667;AN=6;AO=25;CIGAR=1X;DP=38;DPB=38;DPRA=0;EPP=57.2971;EPPR=31.2394;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=927;QR=517;RO=13;RPL=0;RPP=57.2971;RPPR=31.2394;RPR=25;RUN=1;SAF=25;SAP=57.2971;SAR=0;SRF=13;SRP=31.2394;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:18:6,12:6:243:12:455:-35.8754,0,-16.8294 1/1:3:0,3:0:0:3:84:-7.83435,-0.90309,0 0/1:17:7,10:7:274:10:388:-30.1585,0,-19.9076 dDocent_Contig_8452 58 . T C 205.241 . AB=0.3;ABP=13.4334;AC=2;AF=0.333333;AN=6;AO=9;CIGAR=1X;DP=58;DPB=58;DPRA=0.535714;EPP=22.5536;EPPR=109.412;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=0.938776;PAO=0;PQA=0;PQR=0;PRO=0;QA=359;QR=1930;RO=49;RPL=9;RPP=22.5536;RPPR=109.412;RPR=0;RUN=1;SAF=9;SAP=22.5536;SAR=0;SRF=49;SRP=109.412;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:28:28,0:28:1101:0:0:0,-8.42884,-99.3775 0/1:14:12,2:12:477:2:80:-3.37737,0,-39.0637 0/1:16:9,7:9:352:7:279:-20.6636,0,-27.2216 dDocent_Contig_8453 35 . A C 92.1895 . AB=0.214286;ABP=22.8638;AC=2;AF=0.333333;AN=6;AO=7;CIGAR=1X3M1X;DP=52;DPB=52;DPRA=0;EPP=18.2106;EPPR=98.5551;GTI=0;LEN=1;MEANALT=1.33333;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=0.571429;PAIREDR=0.886364;PAO=0;PQA=0;PQR=0;PRO=0;QA=267;QR=1710;RO=44;RPL=0;RPP=18.2106;RPPR=98.5551;RPR=7;RUN=1;SAF=7;SAP=18.2106;SAR=0;SRF=44;SRP=98.5551;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|0:24:22,1:22:859:1:40:0,-3.19279,-73.7532 0|1:11:8,3:8:300:3:114:-7.32048,0,-24.0405 0|1:17:14,3:14:551:3:113:-5.4213,0,-44.8176 dDocent_Contig_8454 31 . C T 413.319 . AB=0.5;ABP=3.0103;AC=3;AF=0.5;AN=6;AO=15;CIGAR=1X;DP=30;DPB=30;DPRA=0;EPP=35.5824;EPPR=35.5824;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=608;QR=586;RO=15;RPL=0;RPP=35.5824;RPPR=35.5824;RPR=15;RUN=1;SAF=15;SAP=35.5824;SAR=0;SRF=15;SRP=35.5824;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:19:8,11:8:324:11:444:-34.5951,0,-23.8096 0/1:3:1,2:1:40:2:82:-6.87659,0,-3.09259 0/1:8:6,2:6:222:2:82:-5.37144,0,-17.9179 dDocent_Contig_8456 33 . T A 1665.74 . AB=0.458716;ABP=4.62396;AC=4;AF=0.666667;AN=6;AO=50;CIGAR=1X1M;DP=109;DPB=109;DPRA=0;EPP=111.584;EPPR=76.8404;GTI=0;LEN=1;MEANALT=1.66667;MQM=60;MQMR=60;NS=3;NUMALT=2;ODDS=1.38778e-17;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=1996;QR=1318;RO=34;RPL=0;RPP=111.584;RPPR=76.8404;RPR=50;RUN=1;SAF=50;SAP=111.584;SAR=0;SRF=34;SRP=76.8404;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|1:62:24,16,22:24:922:16,22:619,889:-66.0823,-24.1265,-94.9688,0,-26.4853,-69.0517 0|1:10:7,0,3:7:280:0,3:0,109:-7.15543,-9.26264,-32.3533,0,-23.4647,-22.5616 1|1:37:3,9,25:3:116:9,25:342,998:-98.859,-72.6785,-79.4941,-17.5473,0,-19.5522 dDocent_Contig_8458 9 . C T 56.6972 . AB=0.173913;ABP=24.253;AC=1;AF=0.166667;AN=6;AO=4;CIGAR=1X;DP=37;DPB=37;DPRA=3.28571;EPP=11.6962;EPPR=74.6689;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=54.6364;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=0.969697;PAO=0;PQA=0;PQR=0;PRO=0;QA=156;QR=1274;RO=33;RPL=0;RPP=11.6962;RPPR=74.6689;RPR=4;RUN=1;SAF=4;SAP=11.6962;SAR=0;SRF=33;SRP=74.6689;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:8:8,0:8:308:0:0:0,-2.40824,-28.0818 0/0:6:6,0:6:230:0:0:0,-1.80618,-21.0529 0/1:23:19,4:19:736:4:156:-7.4936,0,-57.9401 dDocent_Contig_8459 77 . A G 439.281 . AB=0.322581;ABP=19.9618;AC=2;AF=0.333333;AN=6;AO=20;CIGAR=1X;DP=65;DPB=65;DPRA=10.3333;EPP=46.4397;EPPR=100.727;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=727;QR=1642;RO=45;RPL=20;RPP=46.4397;RPPR=100.727;RPR=0;RUN=1;SAF=20;SAP=46.4397;SAR=0;SRF=45;SRP=100.727;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:39:31,8:31:1164:8:285:-14.249,0,-93.3207 0/0:3:3,0:3:106:0:0:0,-0.90309,-9.88821 0/1:23:11,12:11:372:12:442:-33.2018,0,-26.8796 dDocent_Contig_8460 61 . T G 412.296 . AB=0.18797;ABP=115.486;AC=3;AF=0.5;AN=6;AO=25;CIGAR=1X;DP=133;DPB=133;DPRA=0;EPP=57.2971;EPPR=237.529;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=0.972222;PAO=0;PQA=0;PQR=0;PRO=0;QA=953;QR=4249;RO=108;RPL=25;RPP=57.2971;RPPR=237.529;RPR=0;RUN=1;SAF=25;SAP=57.2971;SAR=0;SRF=108;SRP=237.529;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:68:56,12:56:2207:12:473:-22.4502,0,-178.339 0/1:11:7,4:7:280:4:126:-8.33636,0,-22.2602 0/1:54:45,9:45:1762:9:354:-15.9659,0,-142.549 dDocent_Contig_8461 13 . G A 343.202 . AB=0.333333;ABP=9.52472;AC=0;AF=0;AN=6;AO=9;CIGAR=1X2M1X2M1X3M1X2M;DP=55;DPB=55;DPRA=0;EPP=22.5536;EPPR=42.0968;GTI=0;LEN=1;MEANALT=3.5;MQM=17;MQMR=60;NS=3;NUMALT=6;ODDS=0;PAIRED=0;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=153;QR=700;RO=18;RPL=0;RPP=22.5536;RPPR=42.0968;RPR=9;RUN=1;SAF=0;SAP=22.5536;SAR=9;SRF=18;SRP=42.0968;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|0:28:12,0,3,6,0,0,6:12:469:0,3,6,0,0,6:0,111,228,0,0,238:-15.9936,-19.6059,-58.1711,-10.6619,-49.2272,-48.3241,-2.53108,-41.091,-32.1489,-39.2848,-19.6059,-58.1711,-49.2272,-41.091,-58.1711,-19.6059,-58.1711,-49.2272,-41.091,-58.1711,-58.1711,0,-38.575,-29.631,-21.4963,-38.575,-38.575,-36.7689 0|0:6:0,0,0,0,1,3,1:0:0:0,0,0,1,3,1:0,0,0,17,117,41:-13.1012,-13.1012,-13.1012,-13.1012,-13.1012,-13.1012,-13.1012,-13.1012,-13.1012,-13.1012,-12.1801,-12.1801,-12.1801,-12.1801,-11.8791,-3.43886,-3.43886,-3.43886,-3.43886,-2.55668,-2.53577,-9.70419,-9.70419,-9.70419,-9.70419,-8.79011,0,-9.40316 0|0:21:6,4,0,3,8,0,0:6:231:4,0,3,8,0,0:157,0,114,136,0,0:-10.7072,0,-17.8283,-12.5133,-19.0324,-31.5193,-3.94316,-10.4697,-22.9644,-22.0613,-4.93849,-11.4463,-23.913,-15.3764,-21.5048,-12.5133,-19.0324,-31.5193,-22.9644,-23.913,-31.5193,-12.5133,-19.0324,-31.5193,-22.9644,-23.913,-31.5193,-31.5193 dDocent_Contig_8462 27 . G A 1411.36 . AB=0.316092;ABP=54.1273;AC=3;AF=0.5;AN=6;AO=55;CIGAR=1X;DP=174;DPB=174;DPRA=0;EPP=122.441;EPPR=261.416;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=2201;QR=4647;RO=119;RPL=0;RPP=122.441;RPPR=261.416;RPR=55;RUN=1;SAF=55;SAP=122.441;SAR=0;SRF=119;SRP=261.416;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:108:77,31:77:2967:31:1255:-80.7064,0,-234.623 0/1:15:9,6:9:362:6:226:-16.1787,0,-28.4289 0/1:51:33,18:33:1318:18:720:-49.774,0,-103.528 dDocent_Contig_8463 52 . A T 378.038 . AB=0.1;ABP=30.8051;AC=0;AF=0;AN=6;AO=2;CIGAR=1M2D8M1X5M;DP=82;DPB=87.8235;DPRA=0;EPP=7.35324;EPPR=92.0407;GTI=0;LEN=1;MEANALT=4;MQM=60;MQMR=60;NS=3;NUMALT=5;ODDS=1.38778e-17;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=76;QR=1471;RO=41;RPL=0;RPP=7.35324;RPPR=92.0407;RPR=2;RUN=1;SAF=2;SAP=7.35324;SAR=0;SRF=41;SRP=92.0407;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|0:56:26,0,3,3,7,11:26:932:0,3,3,7,11:0,111,111,246,417:-26.3857,-34.2125,-110.23,-25.1296,-101.149,-100.246,-25.1284,-101.148,-92.0669,-100.245,-14.1869,-90.2071,-81.126,-81.1248,-88.0999,0,-76.0318,-66.9501,-66.9489,-56.0075,-72.7205 0|0:6:2,0,0,0,0,4:2:70:0,0,0,0,4:0,0,0,0,141:-11.2292,-11.8313,-17.5257,-11.8313,-17.5257,-17.5257,-11.8313,-17.5257,-17.5257,-17.5257,-11.8313,-17.5257,-17.5257,-17.5257,-17.5257,0,-6.04506,-6.04506,-6.04506,-6.04506,-4.84094 0|0:20:13,2,3,1,0,1:13:469:2,3,1,0,1:76,117,35,0,38:-5.71154,-3.39203,-41.0507,0,-32.0305,-37.3625,-6.78216,-38.8059,-35.4187,-44.7392,-9.62493,-41.6527,-38.2656,-45.0402,-47.887,-6.50841,-38.5354,-35.148,-41.923,-44.7698,-44.4688 dDocent_Contig_8464 122 . A C 70.9338 . AB=0.10628;ABP=281.725;AC=2;AF=0.333333;AN=6;AO=23;CIGAR=1X;DP=254;DPB=254;DPRA=0;EPP=52.9542;EPPR=500.277;GTI=0;LEN=1;MEANALT=1.33333;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=1.38778e-17;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=833;QR=8110;RO=229;RPL=0;RPP=52.9542;RPPR=500.277;RPR=23;RUN=1;SAF=0;SAP=52.9542;SAR=23;SRF=0;SRP=500.277;SRR=229;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:190:170,18:170:5998:18:651:-2.02509,0,-483.016 0/1:17:13,4:13:464:4:147:-8.47237,0,-36.9777 0/0:47:46,1:46:1648:1:35:0,-10.6498,-145.105 dDocent_Contig_8466 156 . C T 75.3009 . AB=0.285714;ABP=8.59409;AC=2;AF=0.333333;AN=6;AO=4;CIGAR=1X;DP=42;DPB=42;DPRA=0.25;EPP=11.6962;EPPR=85.5263;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=160;QR=1482;RO=38;RPL=0;RPP=11.6962;RPPR=85.5263;RPR=4;RUN=1;SAF=0;SAP=11.6962;SAR=4;SRF=0;SRP=85.5263;SRR=38;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:28:28,0:28:1106:0:0:0,-8.42884,-99.831 0/1:6:3,3:3:121:3:119:-9.28883,0,-9.47402 0/1:8:7,1:7:255:1:41:-1.68633,0,-20.8817 dDocent_Contig_8470 23 . C T 215.003 . AB=0.194805;ABP=65.3062;AC=2;AF=0.333333;AN=6;AO=15;CIGAR=1X;DP=96;DPB=96;DPRA=2.02632;EPP=35.5824;EPPR=178.9;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=0.666667;PAIREDR=0.814815;PAO=0;PQA=0;PQR=0;PRO=0;QA=528;QR=3248;RO=81;RPL=0;RPP=35.5824;RPPR=178.9;RPR=15;RUN=1;SAF=15;SAP=35.5824;SAR=0;SRF=81;SRP=178.9;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:69:56,13:56:2243:13:455:-20.5003,0,-181.256 0/1:8:6,2:6:242:2:73:-4.52246,0,-19.7491 0/0:19:19,0:19:763:0:0:0,-5.71957,-68.9909 dDocent_Contig_8471 159 . C A 77.6912 . AB=0.6;ABP=3.44459;AC=1;AF=0.166667;AN=6;AO=3;CIGAR=1X;DP=89;DPB=89;DPRA=0.119048;EPP=9.52472;EPPR=4.62628;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=8.67362e-19;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=119;QR=3298;RO=86;RPL=3;RPP=9.52472;RPPR=4.62628;RPR=0;RUN=1;SAF=0;SAP=9.52472;SAR=3;SRF=0;SRP=189.757;SRR=86;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:70:70,0:70:2678:0:0:0,-21.0721,-241.16 0/0:14:14,0:14:565:0:0:0,-4.21442,-51.1926 0/1:5:2,3:2:55:3:119:-9.59024,0,-3.71468 dDocent_Contig_8472 16 . T A 62.629 . AB=0.235294;ABP=13.3567;AC=2;AF=0.333333;AN=6;AO=4;CIGAR=1X3M1X;DP=26;DPB=26;DPRA=0.944444;EPP=11.6962;EPPR=50.7827;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=157;QR=848;RO=22;RPL=0;RPP=11.6962;RPPR=50.7827;RPR=4;RUN=1;SAF=4;SAP=11.6962;SAR=0;SRF=22;SRP=50.7827;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|1:5:3,2:3:119:2:79:-5.99248,0,-9.59024 0|0:9:9,0:9:356:0:0:0,-2.70927,-32.4025 0|1:12:10,2:10:373:2:78:-3.79094,0,-30.2972 dDocent_Contig_8473 7 . T A 426.495 . AB=0.294118;ABP=9.26925;AC=1;AF=0.166667;AN=6;AO=5;CIGAR=2X3M1X;DP=50;DPB=50;DPRA=0;EPP=13.8677;EPPR=39.9253;GTI=0;LEN=1;MEANALT=2;MQM=31;MQMR=60;NS=3;NUMALT=2;ODDS=0;PAIRED=0;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=193;QR=657;RO=17;RPL=0;RPP=13.8677;RPPR=39.9253;RPR=5;RUN=1;SAF=5;SAP=13.8677;SAR=0;SRF=17;SRP=39.9253;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|0:33:10,0,22:10:387:0,22:0,556:-35.8839,-38.8942,-70.734,0,-32.1006,-25.4779 0|1:7:2,4,0:2:75:4,0:155,0:-9.22734,0,-5.08884,-9.8294,-6.29296,-16.0019 0|0:10:5,1,4:5:195:1,4:38,77:-3.04705,-2.10646,-17.9606,0,-13.6989,-14.8981 dDocent_Contig_8476 36 . T C 369.593 . AB=0.156627;ABP=88.0117;AC=4;AF=0.666667;AN=6;AO=18;CIGAR=1X;DP=88;DPB=88;DPRA=0;EPP=42.0968;EPPR=155.013;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=0.833333;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=715;QR=2802;RO=70;RPL=0;RPP=42.0968;RPPR=155.013;RPR=18;RUN=1;SAF=18;SAP=42.0968;SAR=0;SRF=70;SRP=155.013;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:64:57,7:57:2282:7:282:-6.48667,0,-186.271 1/1:5:0,5:0:0:5:195:-17.9213,-1.50515,0 0/1:19:13,6:13:520:6:238:-16.0742,0,-41.4255 dDocent_Contig_8478 13 . G T 173.654 . AB=0.333333;ABP=8.07707;AC=1;AF=0.166667;AN=6;AO=7;CIGAR=1X;DP=35;DPB=35;DPRA=3;EPP=18.2106;EPPR=63.8115;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=276;QR=1098;RO=28;RPL=0;RPP=18.2106;RPPR=63.8115;RPR=7;RUN=1;SAF=7;SAP=18.2106;SAR=0;SRF=28;SRP=63.8115;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:21:14,7:14:547:7:276:-18.8879,0,-43.2455 0/0:2:2,0:2:79:0:0:0,-0.60206,-7.49724 0/0:12:12,0:12:472:0:0:0,-3.61236,-42.8274 dDocent_Contig_8481 10 . T G 1599.63 . AB=0.282051;ABP=99.5573;AC=3;AF=0.5;AN=6;AO=66;CIGAR=1X;DP=234;DPB=234;DPRA=0;EPP=146.327;EPPR=361.303;GTI=0;LEN=1;MEANALT=1.66667;MQM=58.7727;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=0.681818;PAIREDR=0.957576;PAO=0;PQA=0;PQR=0;PRO=0;QA=2614;QR=6580;RO=165;RPL=0;RPP=146.327;RPPR=361.303;RPR=66;RUN=1;SAF=66;SAP=146.327;SAR=0;SRF=165;SRP=361.303;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:96:70,24:70:2796:24:952:-56.9614,0,-223.036 0/1:68:42,25:42:1681:25:982:-68.0669,0,-130.945 0/1:70:53,17:53:2103:17:680:-40.458,0,-168.377 dDocent_Contig_8482 43 . C T 161.099 . AB=0.121951;ABP=53.9075;AC=4;AF=0.666667;AN=6;AO=8;CIGAR=1X;DP=44;DPB=44;DPRA=0;EPP=20.3821;EPPR=81.1833;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=0.944444;PAO=0;PQA=0;PQR=0;PRO=0;QA=326;QR=1401;RO=36;RPL=0;RPP=20.3821;RPPR=81.1833;RPR=8;RUN=1;SAF=8;SAP=20.3821;SAR=0;SRF=36;SRP=81.1833;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:24:22,2:22:851:2:82:-0.554958,0,-69.6797 1/1:3:0,3:0:0:3:121:-11.2802,-0.90309,0 0/1:17:14,3:14:550:3:123:-6.34728,0,-44.7276 dDocent_Contig_8483 13 . A C 63.2955 . AB=0.272727;ABP=7.94546;AC=1;AF=0.166667;AN=6;AO=3;CIGAR=1X;DP=87;DPB=87;DPRA=0.289474;EPP=9.52472;EPPR=185.414;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=0.666667;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=123;QR=3373;RO=84;RPL=0;RPP=9.52472;RPPR=185.414;RPR=3;RUN=1;SAF=3;SAP=9.52472;SAR=0;SRF=84;SRP=185.414;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:42:42,0:42:1684:0:0:0,-12.6433,-151.784 0/1:11:8,3:8:322:3:123:-8.15346,0,-26.0365 0/0:34:34,0:34:1367:0:0:0,-10.235,-123.287 dDocent_Contig_8484 133 . C A 44.9833 . AB=0.173913;ABP=24.253;AC=1;AF=0.166667;AN=6;AO=4;CIGAR=1X;DP=42;DPB=42;DPRA=2.42105;EPP=11.6962;EPPR=85.5263;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=140;QR=1297;RO=38;RPL=0;RPP=11.6962;RPPR=85.5263;RPR=4;RUN=1;SAF=0;SAP=11.6962;SAR=4;SRF=0;SRP=85.5263;SRR=38;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:23:19,4:19:646:4:140:-6.0211,0,-51.5355 0/0:15:15,0:15:517:0:0:0,-4.51545,-46.8579 0/0:4:4,0:4:134:0:0:0,-1.20412,-12.3913 dDocent_Contig_8485 116 . C T 170.705 . 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A G 136.438 . AB=0.233333;ABP=21.5402;AC=2;AF=0.333333;AN=6;AO=7;CIGAR=1X;DP=35;DPB=35;DPRA=3;EPP=18.2106;EPPR=63.8115;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=279;QR=1092;RO=28;RPL=0;RPP=18.2106;RPPR=63.8115;RPR=7;RUN=1;SAF=0;SAP=18.2106;SAR=7;SRF=0;SRP=63.8115;SRR=28;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:19:17,2:17:663:2:75:-1.40053,0,-54.2875 0/0:5:5,0:5:195:0:0:0,-1.50515,-17.9242 0/1:11:6,5:6:234:5:204:-15.4327,0,-18.1198 dDocent_Contig_8493 34 . T C 293.349 . AB=0.0714286;ABP=47.6806;AC=0;AF=0;AN=6;AO=2;CIGAR=1M2I3M1X;DP=52;DPB=53.2;DPRA=9.33333;EPP=7.35324;EPPR=81.1833;GTI=0;LEN=1;MEANALT=3;MQM=60;MQMR=60;NS=3;NUMALT=2;ODDS=0;PAIRED=0;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=76;QR=1425;RO=36;RPL=0;RPP=7.35324;RPPR=81.1833;RPR=2;RUN=1;SAF=2;SAP=7.35324;SAR=0;SRF=36;SRP=81.1833;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|0:28:19,2,6:19:757:2,6:76,236:-13.6984,-13.1883,-74.927,0,-56.1187,-60.5434 0|0:3:3,0,0:3:111:0,0:0,0:0,-0.90309,-10.3505,-0.90309,-10.3505,-10.3505 0|0:21:14,0,7:14:557:0,7:0,279:-19.159,-23.3734,-69.2361,0,-46.2606,-44.1534 dDocent_Contig_8494 166 . A G 80.5182 . 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AB=0.25;ABP=13.8677;AC=1;AF=0.166667;AN=6;AO=5;CIGAR=1X;DP=35;DPB=35;DPRA=2.66667;EPP=13.8677;EPPR=68.1545;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=202;QR=1218;RO=30;RPL=0;RPP=13.8677;RPPR=68.1545;RPR=5;RUN=1;SAF=5;SAP=13.8677;SAR=0;SRF=30;SRP=68.1545;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:20:15,5:15:611:5:202:-12.5409,0,-49.3063 0/0:2:2,0:2:82:0:0:0,-0.60206,-7.77968 0/0:13:13,0:13:525:0:0:0,-3.91339,-47.5967 dDocent_Contig_8500 23 . A T 77.6825 . AB=0;ABP=0;AC=2;AF=0.333333;AN=6;AO=2;CIGAR=1X;DP=22;DPB=22;DPRA=0.2;EPP=7.35324;EPPR=46.4397;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=1.69407e-21;PAIRED=1;PAIREDR=0.95;PAO=0;PQA=0;PQR=0;PRO=0;QA=80;QR=803;RO=20;RPL=0;RPP=7.35324;RPPR=46.4397;RPR=2;RUN=1;SAF=2;SAP=7.35324;SAR=0;SRF=20;SRP=46.4397;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:11:11,0:11:445:0:0:0,-3.31133,-40.4057 1/1:2:0,2:0:0:2:80:-7.59179,-0.60206,0 0/0:9:9,0:9:358:0:0:0,-2.70927,-32.5815 dDocent_Contig_8501 41 . G T 233.216 . AB=0.268293;ABP=22.1298;AC=3;AF=0.5;AN=6;AO=11;CIGAR=1X;DP=41;DPB=41;DPRA=0;EPP=26.8965;EPPR=68.1545;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=3.46945e-18;PAIRED=0.727273;PAIREDR=0.866667;PAO=0;PQA=0;PQR=0;PRO=0;QA=428;QR=1160;RO=30;RPL=0;RPP=26.8965;RPPR=68.1545;RPR=11;RUN=1;SAF=11;SAP=26.8965;SAR=0;SRF=30;SRP=68.1545;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:12:11,1:11:429:1:41:-0.482207,0,-35.3488 0/1:14:9,5:9:333:5:194:-13.6169,0,-26.0992 0/1:15:10,5:10:398:5:193:-13.2233,0,-31.6623 dDocent_Contig_8502 9 . A G 760.595 . AB=0.481481;ABP=3.17115;AC=4;AF=0.666667;AN=6;AO=26;CIGAR=1X2M;DP=54;DPB=54;DPRA=0;EPP=59.4686;EPPR=48.6112;GTI=0;LEN=1;MEANALT=1.66667;MQM=60;MQMR=60;NS=3;NUMALT=2;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=986;QR=827;RO=21;RPL=0;RPP=59.4686;RPPR=48.6112;RPR=26;RUN=1;SAF=26;SAP=59.4686;SAR=0;SRF=21;SRP=48.6112;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|1:31:10,5,16:10:399:5,16:193,614:-47.3869,-34.5462,-65.9084,0,-17.024,-28.0537 1|1:4:0,2,2:0:0:2,2:77,66:-12.0143,-5.66447,-5.06241,-6.70708,0,-6.10502 0|1:19:11,0,8:11:428:0,8:0,306:-22.181,-25.4923,-60.6681,0,-35.5607,-33.1525 dDocent_Contig_8503 106 . N T 199.383 . AB=0.8;ABP=6.91895;AC=4;AF=1;AN=4;AO=4;CIGAR=1X10I4X3M;DP=7;DPB=15.75;DPRA=2.5;EPP=11.6962;EPPR=0;GTI=0;LEN=1;MEANALT=2;MQM=48.5;MQMR=0;NS=2;NUMALT=2;ODDS=0;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=148;QR=0;RO=0;RPL=0;RPP=11.6962;RPPR=0;RPR=4;RUN=1;SAF=4;SAP=11.6962;SAR=0;SRF=0;SRP=0;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 1|1:5:0,1,4:0:0:1,4:37,148:-15.0591,-12.1908,-11.8898,-3.22256,0,-2.01844 .:.:.:.:.:.:.:. 1|1:2:0,2,0:0:0:2,0:70,0:-6.40739,-0.60206,0,-6.40739,-0.60206,-6.40739 dDocent_Contig_8504 21 . G A 377.389 . AB=0.0625;ABP=56.2114;AC=0;AF=0;AN=6;AO=2;CIGAR=2M1X;DP=85;DPB=91.3333;DPRA=0;EPP=7.35324;EPPR=139.813;GTI=0;LEN=1;MEANALT=3;MQM=60;MQMR=60;NS=3;NUMALT=2;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=82;QR=2491;RO=63;RPL=0;RPP=7.35324;RPPR=139.813;RPR=2;RUN=1;SAF=2;SAP=7.35324;SAR=0;SRF=63;SRP=139.813;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|0:32:19,10,2:19:749:10,2:390,82:-26.3274,0,-58.5993,-25.2756,-54.84,-86.2914 0|0:15:11,4,0:11:428:4,0:159,0:-10.1765,0,-34.3555,-13.4878,-35.5596,-48.6526 0|0:38:33,5,0:33:1314:5,0:198,0:-6.75786,0,-107.088,-16.6919,-108.593,-124.889 dDocent_Contig_8505 107 . N C 55.775 . AB=0;ABP=0;AC=2;AF=1;AN=2;AO=2;CIGAR=1X;DP=2;DPB=2;DPRA=0;EPP=7.35324;EPPR=0;GTI=0;LEN=1;MEANALT=1;MQM=32;MQMR=0;NS=1;NUMALT=1;ODDS=5.99146;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=66;QR=0;RO=0;RPL=0;RPP=7.35324;RPPR=0;RPR=2;RUN=1;SAF=0;SAP=7.35324;SAR=2;SRF=0;SRP=0;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 1/1:2:0,2:0:0:2:66:-5.57641,-0.60206,0 ./.:.:.:.:.:.:.:. ./.:.:.:.:.:.:.:. dDocent_Contig_8506 14 . T A 512.366 . AB=0.422222;ABP=5.37479;AC=2;AF=0.333333;AN=6;AO=19;CIGAR=1X;DP=53;DPB=53;DPRA=2.8125;EPP=44.2683;EPPR=76.8404;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=751;QR=1364;RO=34;RPL=0;RPP=44.2683;RPPR=76.8404;RPR=19;RUN=1;SAF=19;SAP=44.2683;SAR=0;SRF=34;SRP=76.8404;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:23:13,10:13:530:10:387:-28.2577,0,-41.1229 0/1:22:13,9:13:513:9:364:-26.5017,0,-39.892 0/0:8:8,0:8:321:0:0:0,-2.40824,-29.2568 dDocent_Contig_8509 13 . T C 1038.33 . AB=0.529412;ABP=3.52123;AC=3;AF=0.5;AN=6;AO=36;CIGAR=1X;DP=68;DPB=68;DPRA=0;EPP=81.1833;EPPR=72.4974;GTI=0;LEN=1;MEANALT=1;MQM=59.6111;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=1432;QR=1283;RO=32;RPL=0;RPP=81.1833;RPPR=72.4974;RPR=36;RUN=1;SAF=36;SAP=81.1833;SAR=0;SRF=32;SRP=72.4974;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:42:20,22:20:805:22:864:-65.4229,0,-60.1236 0/1:10:8,2:8:317:2:80:-4.58149,0,-25.8843 0/1:16:4,12:4:161:12:488:-39.3514,0,-10.0588 dDocent_Contig_8510 51 . C A 139.952 . AB=0.205882;ABP=28.557;AC=1;AF=0.166667;AN=6;AO=7;CIGAR=1X;DP=41;DPB=41;DPRA=9.71429;EPP=18.2106;EPPR=76.8404;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=1.73472e-18;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=282;QR=1364;RO=34;RPL=7;RPP=18.2106;RPPR=76.8404;RPR=0;RUN=1;SAF=7;SAP=18.2106;SAR=0;SRF=34;SRP=76.8404;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:34:27,7:27:1081:7:282:-15.5174,0,-87.3359 0/0:1:1,0:1:41:0:0:0,-0.30103,-4.09457 0/0:6:6,0:6:242:0:0:0,-1.80618,-22.1573 dDocent_Contig_8512 65 . T C 3764.03 . AB=0.877698;ABP=175.244;AC=3;AF=0.5;AN=6;AO=122;CIGAR=1X;DP=139;DPB=139;DPRA=0;EPP=267.93;EPPR=39.9253;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=4696;QR=667;RO=17;RPL=122;RPP=267.93;RPPR=39.9253;RPR=0;RUN=1;SAF=122;SAP=267.93;SAR=0;SRF=17;SRP=39.9253;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:91:9,82:9:358:82:3164:-257.464,0,-5.18838 0/1:8:1,7:1:41:7:270:-22.2532,0,-1.68633 0/1:40:7,33:7:268:33:1262:-101.83,0,-12.4424 dDocent_Contig_8513 107 . N A 139.212 . AB=0;ABP=0;AC=4;AF=1;AN=4;AO=6;CIGAR=1X;DP=6;DPB=6;DPRA=0;EPP=16.0391;EPPR=0;GTI=0;LEN=1;MEANALT=1;MQM=36;MQMR=0;NS=2;NUMALT=1;ODDS=0;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=149;QR=0;RO=0;RPL=0;RPP=16.0391;RPPR=0;RPR=6;RUN=1;SAF=0;SAP=16.0391;SAR=6;SRF=0;SRP=0;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 1/1:3:0,3:0:0:3:63:-5.8333,-0.90309,0 1/1:3:0,3:0:0:3:86:-7.78636,-0.90309,0 ./.:.:.:.:.:.:.:. dDocent_Contig_8515 44 . A G 71.826 . AB=0.266667;ABP=10.1038;AC=1;AF=0.166667;AN=6;AO=4;CIGAR=1X;DP=30;DPB=30;DPRA=2;EPP=11.6962;EPPR=51.1168;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=143;QR=1029;RO=26;RPL=4;RPP=11.6962;RPPR=51.1168;RPR=0;RUN=1;SAF=4;SAP=11.6962;SAR=0;SRF=26;SRP=59.4686;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:15:11,4:11:438:4:143:-8.70539,0,-35.2588 0/0:4:4,0:4:159:0:0:0,-1.20412,-14.692 0/0:11:11,0:11:432:0:0:0,-3.31133,-39.2312 dDocent_Contig_8516 13 . C T 191.979 . AB=0.24;ABP=17.6895;AC=4;AF=0.666667;AN=6;AO=8;CIGAR=1X;DP=27;DPB=27;DPRA=0;EPP=20.3821;EPPR=44.2683;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=323;QR=757;RO=19;RPL=0;RPP=20.3821;RPPR=44.2683;RPR=8;RUN=1;SAF=8;SAP=20.3821;SAR=0;SRF=19;SRP=44.2683;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:17:14,3:14:554:3:122:-6.25498,0,-45.0783 1/1:2:0,2:0:0:2:81:-7.68573,-0.60206,0 0/1:8:5,3:5:203:3:120:-8.77966,0,-16.2448 dDocent_Contig_8517 65 . G A 242.317 . AB=0.37931;ABP=6.67934;AC=3;AF=0.5;AN=6;AO=11;CIGAR=1X2M;DP=29;DPB=29;DPRA=0;EPP=26.8965;EPPR=37.7539;GTI=0;LEN=1;MEANALT=1.33333;MQM=60;MQMR=60;NS=3;NUMALT=2;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=408;QR=602;RO=16;RPL=11;RPP=26.8965;RPPR=37.7539;RPR=0;RUN=1;SAF=11;SAP=26.8965;SAR=0;SRF=16;SRP=37.7539;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|1:12:7,2,3:7:270:2,3:80,114:-7.2303,-2.73961,-24.3142,0,-15.5686,-21.2586 0|1:10:3,0,7:3:115:0,7:0,257:-20.471,-21.3741,-30.8179,0,-9.82194,-7.71473 0|1:7:6,0,1:6:217:0,1:0,37:-1.59062,-3.3968,-21.1035,0,-18.0753,-17.7742 dDocent_Contig_8518 64 . T C 1185.45 . AB=0.661765;ABP=18.4661;AC=3;AF=0.5;AN=6;AO=45;CIGAR=1X;DP=68;DPB=68;DPRA=0;EPP=100.727;EPPR=52.9542;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=3.46945e-18;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=1595;QR=703;RO=23;RPL=45;RPP=100.727;RPPR=52.9542;RPR=0;RUN=1;SAF=45;SAP=100.727;SAR=0;SRF=23;SRP=52.9542;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:35:11,24:11:341:24:846:-65.9073,0,-20.4574 0/1:12:7,5:7:207:5:184:-13.3048,0,-15.3095 0/1:21:5,16:5:155:16:565:-44.8559,0,-7.93491 dDocent_Contig_8519 45 . C A 167.831 . AB=0.209302;ABP=34.5724;AC=2;AF=0.333333;AN=6;AO=10;CIGAR=1X;DP=76;DPB=76;DPRA=0;EPP=24.725;EPPR=146.327;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=401;QR=2591;RO=66;RPL=0;RPP=24.725;RPPR=146.327;RPR=10;RUN=1;SAF=10;SAP=24.725;SAR=0;SRF=66;SRP=146.327;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:37:30,7:30:1174:7:282:-14.6149,0,-94.7928 0/1:6:4,2:4:164:2:79:-5.69106,0,-13.3437 0/0:33:32,1:32:1253:1:40:0,-5.93831,-109.042 dDocent_Contig_8520 35 . A G 243.876 . AB=0.314286;ABP=13.4954;AC=2;AF=0.5;AN=4;AO=11;CIGAR=2X;DP=35;DPB=35;DPRA=0;EPP=26.8965;EPPR=55.1256;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=2;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=421;QR=958;RO=24;RPL=0;RPP=26.8965;RPPR=55.1256;RPR=11;RUN=1;SAF=11;SAP=26.8965;SAR=0;SRF=24;SRP=55.1256;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|1:23:14,9:14:556:9:346:-24.5726,0,-43.4594 .:.:.:.:.:.:.:. 0|1:12:10,2:10:402:2:75:-3.50723,0,-32.9275 dDocent_Contig_8521 11 . C A 74.7444 . AB=0.16129;ABP=33.9012;AC=1;AF=0.166667;AN=6;AO=5;CIGAR=1X;DP=91;DPB=91;DPRA=1.03333;EPP=13.8677;EPPR=189.757;GTI=0;LEN=1;MEANALT=1;MQM=58;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=0;PAIREDR=0.127907;PAO=0;PQA=0;PQR=0;PRO=0;QA=203;QR=3427;RO=86;RPL=0;RPP=13.8677;RPPR=189.757;RPR=5;RUN=1;SAF=5;SAP=13.8677;SAR=0;SRF=86;SRP=189.757;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:40:40,0:40:1594:0:0:0,-12.0412,-143.692 0/0:20:20,0:20:784:0:0:0,-6.0206,-70.8781 0/1:31:26,5:26:1049:5:203:-9.29835,0,-85.3669 dDocent_Contig_8522 16 . T C 1024.53 . AB=0.327434;ABP=32.2387;AC=3;AF=0.5;AN=6;AO=37;CIGAR=1X8M;DP=113;DPB=113;DPRA=0;EPP=83.3548;EPPR=135.47;GTI=0;LEN=1;MEANALT=3.33333;MQM=60;MQMR=60;NS=3;NUMALT=3;ODDS=1.38778e-17;PAIRED=0.945946;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=1487;QR=2380;RO=61;RPL=0;RPP=83.3548;RPPR=135.47;RPR=37;RUN=1;SAF=37;SAP=83.3548;SAR=0;SRF=61;SRP=135.47;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|1:74:32,3,0,33:32:1263:3,0,33:120,0,1329:-99.9089,-99.6567,-202.674,-109.542,-203.577,-213.463,0,-94.0384,-103.924,-93.9901 0|1:14:10,2,0,1:10:389:2,0,1:81,0,36:-3.68419,0,-31.3774,-6.69449,-31.9794,-38.6612,-3.76686,-29.0444,-35.726,-35.425 0|1:25:19,0,3,3:19:728:0,3,3:0,104,122:-4.37782,-10.0974,-69.8515,-1.91215,-61.6379,-60.7348,0,-59.7848,-51.5715,-58.8817 dDocent_Contig_8523 16 . C T 32.1588 . AB=0.105263;ABP=28.7251;AC=0;AF=0;AN=6;AO=2;CIGAR=2X;DP=45;DPB=45;DPRA=3.16667;EPP=7.35324;EPPR=83.3548;GTI=0;LEN=1;MEANALT=2;MQM=24;MQMR=60;NS=3;NUMALT=2;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=73;QR=1469;RO=37;RPL=0;RPP=7.35324;RPPR=83.3548;RPR=2;RUN=1;SAF=2;SAP=7.35324;SAR=0;SRF=37;SRP=83.3548;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|0:20:16,0,3:16:632:0,3:0,114:-4.64038,-9.45686,-61.498,0,-52.1514,-51.2483 0|0:6:6,0,0:6:240:0,0:0,0:0,-1.80618,-21.9758,-1.80618,-21.9758,-21.9758 0|0:19:15,2,2:15:597:2,2:73,77:-1.88018,-2.79408,-51.3589,0,-45.6404,-48.6946 dDocent_Contig_8524 17 . C T 99.4059 . AB=0.25;ABP=9.52472;AC=0;AF=0;AN=6;AO=3;CIGAR=1X3M1X;DP=28;DPB=28;DPRA=1.5;EPP=9.52472;EPPR=48.6112;GTI=0;LEN=1;MEANALT=2;MQM=60;MQMR=60;NS=3;NUMALT=2;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=121;QR=817;RO=21;RPL=0;RPP=9.52472;RPPR=48.6112;RPR=3;RUN=1;SAF=3;SAP=9.52472;SAR=0;SRF=21;SRP=48.6112;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|0:2:2,0,0:2:78:0,0:0,0:0,-0.60206,-7.4033,-0.60206,-7.4033,-7.4033 0|0:14:14,0,0:14:537:0,0:0,0:0,-4.21442,-48.6703,-4.21442,-48.6703,-48.6703 0|0:12:5,3,4:5:202:3,4:121,161:-11.7637,-3.29426,-19.0454,0,-6.67982,-15.4497 dDocent_Contig_8525 22 . G A 454.127 . AB=0.4;ABP=6.91895;AC=3;AF=0.5;AN=6;AO=18;CIGAR=1X;DP=45;DPB=45;DPRA=0;EPP=42.0968;EPPR=61.6401;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=3.46945e-18;PAIRED=0.277778;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=704;QR=1066;RO=27;RPL=0;RPP=42.0968;RPPR=61.6401;RPR=18;RUN=1;SAF=18;SAP=42.0968;SAR=0;SRF=27;SRP=61.6401;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:7:5,2:5:189:2:82:-5.67247,0,-15.2624 0/1:15:12,3:12:484:3:119:-6.57956,0,-39.3965 0/1:23:10,13:10:393:13:503:-38.6836,0,-28.8033 dDocent_Contig_8527 28 . C A 83.0126 . AB=0.166667;ABP=55.1256;AC=2;AF=0.5;AN=4;AO=9;CIGAR=1X;DP=54;DPB=54;DPRA=0;EPP=22.5536;EPPR=100.727;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=2;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=306;QR=1774;RO=45;RPL=0;RPP=22.5536;RPPR=100.727;RPR=9;RUN=1;SAF=9;SAP=22.5536;SAR=0;SRF=45;SRP=100.727;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:39:35,4:35:1387:4:155:-2.58456,0,-113.35 ./.:.:.:.:.:.:.:. 0/1:15:10,5:10:387:5:151:-9.36254,0,-30.6701 dDocent_Contig_8529 16 . G T 316.775 . AB=0.265306;ABP=26.4533;AC=2;AF=0.333333;AN=6;AO=13;CIGAR=1X;DP=54;DPB=54;DPRA=4.9;EPP=31.2394;EPPR=92.0407;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=533;QR=1669;RO=41;RPL=0;RPP=31.2394;RPPR=92.0407;RPR=13;RUN=1;SAF=13;SAP=31.2394;SAR=0;SRF=41;SRP=92.0407;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:38:26,12:26:1059:12:492:-33.1916,0,-84.1575 0/0:5:5,0:5:205:0:0:0,-1.50515,-18.835 0/1:11:10,1:10:405:1:41:-0.783237,0,-33.4987 dDocent_Contig_8530 95 . A T 476.239 . AB=0.278351;ABP=44.4026;AC=3;AF=0.5;AN=6;AO=27;CIGAR=1X;DP=97;DPB=97;DPRA=0;EPP=61.6401;EPPR=155.013;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=6.93889e-18;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=904;QR=2364;RO=70;RPL=27;RPP=61.6401;RPPR=155.013;RPR=0;RUN=1;SAF=27;SAP=61.6401;SAR=0;SRF=70;SRP=155.013;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:67:47,20:47:1578:20:686:-41.8923,0,-122.137 0/1:13:11,2:11:378:2:70:-2.73401,0,-30.4381 0/1:17:12,5:12:408:5:148:-8.49456,0,-31.9303 dDocent_Contig_8531 57 . A T 1204.17 . AB=0.33945;ABP=27.4145;AC=1;AF=0.166667;AN=6;AO=37;CIGAR=1X3M1X;DP=115;DPB=115;DPRA=9.08333;EPP=83.3548;EPPR=96.3836;GTI=0;LEN=1;MEANALT=2;MQM=59.8378;MQMR=60;NS=3;NUMALT=2;ODDS=0;PAIRED=0;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=1197;QR=1375;RO=43;RPL=0;RPP=83.3548;RPPR=96.3836;RPR=37;RUN=1;SAF=0;SAP=83.3548;SAR=37;SRF=0;SRP=96.3836;SRR=43;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|1:75:28,33,14:28:895:33,14:1061,445:-77.1009,0,-62.1696,-49.7046,-36.2779,-117.592 0|0:6:0,0,6:0:0:0,6:0,180:-16.4964,-16.4964,-16.4964,-1.80618,-1.80618,0 0|0:34:15,4,15:15:480:4,15:136,438:-30.3427,-23.8162,-61.3004,0,-27.6225,-34.1432 dDocent_Contig_8532 26 . T C 484.992 . AB=0.358491;ABP=12.2288;AC=3;AF=0.5;AN=6;AO=19;CIGAR=1X;DP=53;DPB=53;DPRA=0;EPP=44.2683;EPPR=76.8404;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=0.947368;PAIREDR=0.794118;PAO=0;PQA=0;PQR=0;PRO=0;QA=765;QR=1367;RO=34;RPL=0;RPP=44.2683;RPPR=76.8404;RPR=19;RUN=1;SAF=19;SAP=44.2683;SAR=0;SRF=34;SRP=76.8404;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:22:15,7:15:598:7:280:-18.9485,0,-47.5368 0/1:9:4,5:4:159:5:203:-15.9436,0,-11.9827 0/1:22:15,7:15:610:7:282:-19.1299,0,-48.6146 dDocent_Contig_8534 28 . T C 1074.71 . AB=0.333333;ABP=8.80089;AC=4;AF=0.666667;AN=6;AO=34;CIGAR=1X1M1X;DP=51;DPB=51;DPRA=0;EPP=76.8404;EPPR=39.9253;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=1345;QR=680;RO=17;RPL=0;RPP=76.8404;RPPR=39.9253;RPR=34;RUN=1;SAF=34;SAP=76.8404;SAR=0;SRF=17;SRP=39.9253;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 1|1:27:1,26:1:39:26:1028:-88.9233,-4.23125,0 0|1:11:6,5:6:243:5:195:-14.6116,0,-18.9363 0|1:13:10,3:10:398:3:122:-7.4591,0,-32.2665 dDocent_Contig_8536 165 . C T 30.7167 . AB=0.5;ABP=3.0103;AC=1;AF=0.25;AN=4;AO=2;CIGAR=1X;DP=8;DPB=8;DPRA=1;EPP=7.35324;EPPR=16.0391;GTI=0;LEN=1;MEANALT=1;MQM=40;MQMR=40;NS=2;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=68;QR=207;RO=6;RPL=0;RPP=7.35324;RPPR=16.0391;RPR=2;RUN=1;SAF=0;SAP=7.35324;SAR=2;SRF=0;SRP=16.0391;SRR=6;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL ./.:.:.:.:.:.:.:. 0/0:4:4,0:4:137:0:0:0,-1.20412,-12.2824 0/1:4:2,2:2:70:2:68:-5.07103,0,-5.21921 dDocent_Contig_8537 9 . A G 248.674 . AB=0.323529;ABP=12.2071;AC=2;AF=0.333333;AN=6;AO=12;CIGAR=1X;DP=47;DPB=47;DPRA=0;EPP=29.068;EPPR=70.5741;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=59.6571;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=0.828571;PAO=0;PQA=0;PQR=0;PRO=0;QA=460;QR=1334;RO=35;RPL=0;RPP=29.068;RPPR=79.0118;RPR=12;RUN=1;SAF=12;SAP=29.068;SAR=0;SRF=34;SRP=70.5741;SRR=1;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:16:12,4:12:466:4:152:-9.23328,0,-37.4756 0/1:18:11,7:11:425:7:269:-19.1556,0,-33.1508 0/0:13:12,1:12:443:1:39:0,-0.0168255,-36.3131 dDocent_Contig_8538 76 . T A 150.202 . AB=0.545455;ABP=3.20771;AC=1;AF=0.166667;AN=6;AO=6;CIGAR=1X;DP=42;DPB=42;DPRA=0.709677;EPP=16.0391;EPPR=81.1833;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=0;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=220;QR=1431;RO=36;RPL=6;RPP=16.0391;RPPR=81.1833;RPR=0;RUN=1;SAF=6;SAP=16.0391;SAR=0;SRF=36;SRP=81.1833;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:25:25,0:25:990:0:0:0,-7.52575,-89.3961 0/0:6:6,0:6:245:0:0:0,-1.80618,-22.4295 0/1:11:5,6:5:196:6:220:-16.8441,0,-14.703 dDocent_Contig_8539 7 . T C 589.629 . AB=0.295455;ABP=34.9902;AC=2;AF=0.333333;AN=6;AO=27;CIGAR=1X;DP=108;DPB=108;DPRA=0;EPP=61.6401;EPPR=178.9;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=0;PAIREDR=0.91358;PAO=0;PQA=0;PQR=0;PRO=0;QA=1019;QR=3105;RO=81;RPL=0;RPP=61.6401;RPPR=178.9;RPR=27;RUN=1;SAF=27;SAP=61.6401;SAR=0;SRF=81;SRP=178.9;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:64:48,16:48:1843:16:608:-35.7911,0,-146.855 0/1:24:14,10:14:535:10:373:-26.6946,0,-41.2697 0/0:20:19,1:19:727:1:38:0,-2.22333,-61.9636 dDocent_Contig_8540 37 . A T 3310.27 . AB=0.666667;ABP=41.373;AC=2;AF=0.333333;AN=6;AO=106;CIGAR=1X;DP=162;DPB=162;DPRA=26.5;EPP=233.186;EPPR=124.613;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=4245;QR=2228;RO=56;RPL=0;RPP=233.186;RPPR=124.613;RPR=106;RUN=1;SAF=106;SAP=233.186;SAR=0;SRF=56;SRP=124.613;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:119:31,88:31:1238:88:3518:-280.835,0,-75.8722 0/0:3:3,0:3:118:0:0:0,-0.90309,-11.0016 0/1:40:22,18:22:872:18:727:-53.7142,0,-66.7496 dDocent_Contig_8541 124 . T C 51.6992 . AB=0.333333;ABP=5.18177;AC=1;AF=0.166667;AN=6;AO=3;CIGAR=1X;DP=32;DPB=32;DPRA=0.782609;EPP=9.52472;EPPR=65.983;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=104;QR=984;RO=29;RPL=0;RPP=9.52472;RPPR=65.983;RPR=3;RUN=1;SAF=0;SAP=9.52472;SAR=3;SRF=0;SRP=65.983;SRR=29;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:12:12,0:12:392:0:0:0,-3.61236,-35.596 0/0:11:11,0:11:384:0:0:0,-3.31133,-34.8956 0/1:9:6,3:6:208:3:104:-6.99382,0,-16.3504 dDocent_Contig_8542 98 . N G 50.565 . AB=0;ABP=0;AC=2;AF=1;AN=2;AO=2;CIGAR=1X;DP=2;DPB=2;DPRA=0;EPP=7.35324;EPPR=0;GTI=0;LEN=1;MEANALT=1;MQM=27.5;MQMR=0;NS=1;NUMALT=1;ODDS=5.99146;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=70;QR=0;RO=0;RPL=2;RPP=7.35324;RPPR=0;RPR=0;RUN=1;SAF=2;SAP=7.35324;SAR=0;SRF=0;SRP=0;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 1/1:2:0,2:0:0:2:70:-5.05541,-0.60206,0 ./.:.:.:.:.:.:.:. ./.:.:.:.:.:.:.:. dDocent_Contig_8543 62 . G C 941.13 . AB=0.425;ABP=6.91895;AC=2;AF=0.333333;AN=6;AO=34;CIGAR=1X;DP=84;DPB=84;DPRA=10;EPP=76.8404;EPPR=111.584;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=1345;QR=1996;RO=50;RPL=34;RPP=76.8404;RPPR=111.584;RPR=0;RUN=1;SAF=34;SAP=76.8404;SAR=0;SRF=50;SRP=111.584;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:65:33,32:33:1317:32:1269:-94.909,0,-99.228 0/0:4:4,0:4:157:0:0:0,-1.20412,-14.5072 0/1:15:13,2:13:522:2:76:-2.69881,0,-42.8121 dDocent_Contig_8545 29 . C G 338.899 . AB=0.306122;ABP=19.0083;AC=3;AF=0.5;AN=6;AO=15;CIGAR=1X;DP=49;DPB=49;DPRA=0;EPP=35.5824;EPPR=76.8404;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=3.46945e-18;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=589;QR=1373;RO=34;RPL=0;RPP=35.5824;RPPR=76.8404;RPR=15;RUN=1;SAF=15;SAP=35.5824;SAR=0;SRF=34;SRP=76.8404;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:38:26,12:26:1046:12:469:-31.1134,0,-82.9857 0/1:4:3,1:3:123:1:39:-2.69244,0,-10.2607 0/1:7:5,2:5:204:2:81:-5.57852,0,-16.6368 dDocent_Contig_8546 27 . G A 439.571 . AB=0.243902;ABP=49.7234;AC=2;AF=0.333333;AN=6;AO=21;CIGAR=1X;DP=99;DPB=99;DPRA=0;EPP=48.6112;EPPR=172.385;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=0.857143;PAIREDR=0.897436;PAO=0;PQA=0;PQR=0;PRO=0;QA=835;QR=3097;RO=78;RPL=0;RPP=48.6112;RPPR=172.385;RPR=21;RUN=1;SAF=21;SAP=48.6112;SAR=0;SRF=78;SRP=172.385;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:58:42,16:42:1657:16:640:-40.4751,0,-131.894 0/0:17:16,1:16:641:1:41:0,-1.02294,-53.9302 0/1:24:20,4:20:799:4:154:-7.0047,0,-65.002 dDocent_Contig_8548 15 . C T 741.649 . AB=0.5;ABP=3.0103;AC=3;AF=0.5;AN=6;AO=26;CIGAR=1X;DP=52;DPB=52;DPRA=0;EPP=59.4686;EPPR=59.4686;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=0.807692;PAIREDR=0.961538;PAO=0;PQA=0;PQR=0;PRO=0;QA=1047;QR=1024;RO=26;RPL=0;RPP=59.4686;RPPR=59.4686;RPR=26;RUN=1;SAF=26;SAP=59.4686;SAR=0;SRF=26;SRP=59.4686;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:18:9,9:9:347:9:366:-27.8864,0,-26.1635 0/1:4:1,3:1:40:3:118:-9.79746,0,-2.79156 0/1:30:16,14:16:637:14:563:-41.9811,0,-48.6286 dDocent_Contig_8549 44 . G A 71.3941 . AB=0.238095;ABP=15.5221;AC=2;AF=0.333333;AN=6;AO=6;CIGAR=1X;DP=47;DPB=47;DPRA=0;EPP=16.0391;EPPR=92.0407;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=221;QR=1537;RO=41;RPL=0;RPP=16.0391;RPPR=92.0407;RPR=6;RUN=1;SAF=6;SAP=16.0391;SAR=0;SRF=41;SRP=92.0407;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:26:25,1:25:925:1:40:0,-3.8311,-79.5394 0/1:7:5,2:5:196:2:63:-3.87256,0,-15.9073 0/1:14:11,3:11:416:3:118:-6.78778,0,-33.5649 dDocent_Contig_8550 7 . T C 764.031 . AB=0.560976;ABP=4.33437;AC=3;AF=0.5;AN=6;AO=23;CIGAR=1X3M;DP=72;DPB=72;DPRA=0.66129;EPP=52.9542;EPPR=85.5263;GTI=0;LEN=1;MEANALT=2;MQM=60;MQMR=60;NS=3;NUMALT=2;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=891;QR=1456;RO=38;RPL=0;RPP=52.9542;RPPR=85.5263;RPR=23;RUN=1;SAF=23;SAP=52.9542;SAR=0;SRF=38;SRP=85.5263;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|0:31:29,2,0:29:1108:2,0:78,0:0,-1.92846,-92.6191,-8.72987,-93.2211,-99.6334 0|1:20:7,4,9:7:271:4,9:156,348:-26.4752,-15.7579,-36.8162,0,-9.43593,-19.5512 1|1:21:2,5,14:2:77:5,14:192,543:-53.4508,-38.2945,-43.1114,-9.43594,0,-11.5442 dDocent_Contig_8551 29 . A C 97.7411 . AB=0;ABP=0;AC=4;AF=1;AN=4;AO=3;CIGAR=1X;DP=3;DPB=3;DPRA=0;EPP=9.52472;EPPR=0;GTI=0;LEN=1;MEANALT=1;MQM=53.3333;MQMR=0;NS=2;NUMALT=1;ODDS=0;PAIRED=0.666667;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=98;QR=0;RO=0;RPL=0;RPP=9.52472;RPPR=0;RPR=3;RUN=1;SAF=0;SAP=9.52472;SAR=3;SRF=0;SRP=0;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL ./.:.:.:.:.:.:.:. 1/1:2:0,2:0:0:2:63:-5.97275,-0.60206,0 1/1:1:0,1:0:0:1:35:-3.49863,-0.30103,0 dDocent_Contig_8552 89 . A G 58.1433 . AB=0.6;ABP=3.44459;AC=1;AF=0.166667;AN=6;AO=3;CIGAR=1X;DP=22;DPB=22;DPRA=0.588235;EPP=9.52472;EPPR=44.2683;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=98;QR=689;RO=19;RPL=3;RPP=9.52472;RPPR=44.2683;RPR=0;RUN=1;SAF=3;SAP=9.52472;SAR=0;SRF=19;SRP=44.2683;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:11:11,0:11:398:0:0:0,-3.31133,-36.1627 0/0:6:6,0:6:220:0:0:0,-1.80618,-20.1555 0/1:5:2,3:2:71:3:98:-7.63814,0,-5.23691 dDocent_Contig_8553 36 . C T 150.964 . AB=0.315789;ABP=8.61041;AC=1;AF=0.166667;AN=6;AO=6;CIGAR=1X;DP=32;DPB=32;DPRA=2.92308;EPP=16.0391;EPPR=59.4686;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=1.73472e-18;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=244;QR=1032;RO=26;RPL=0;RPP=16.0391;RPPR=59.4686;RPR=6;RUN=1;SAF=6;SAP=16.0391;SAR=0;SRF=26;SRP=59.4686;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:19:13,6:13:511:6:244:-16.6193,0,-40.6126 0/0:6:6,0:6:239:0:0:0,-1.80618,-21.8844 0/0:7:7,0:7:282:0:0:0,-2.10721,-25.7526 dDocent_Contig_8554 11 . T C 364.592 . AB=0.271186;ABP=29.8409;AC=3;AF=0.5;AN=6;AO=16;CIGAR=1X;DP=59;DPB=59;DPRA=0;EPP=37.7539;EPPR=96.3836;GTI=0;LEN=1;MEANALT=1;MQM=59.375;MQMR=51.2093;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=649;QR=1589;RO=43;RPL=0;RPP=37.7539;RPPR=96.3836;RPR=16;RUN=1;SAF=16;SAP=37.7539;SAR=0;SRF=43;SRP=96.3836;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:18:13,5:13:504:5:202:-13.143,0,-32.4832 0/1:7:6,1:6:224:1:40:-1.88847,0,-18.4083 0/1:34:24,10:24:861:10:407:-26.7395,0,-66.2635 dDocent_Contig_8555 19 . A G 172.55 . AB=0.178571;ABP=53.2644;AC=1;AF=0.166667;AN=6;AO=10;CIGAR=1X;DP=105;DPB=105;DPRA=2.28571;EPP=24.725;EPPR=209.3;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=0.9;PAIREDR=0.989474;PAO=0;PQA=0;PQR=0;PRO=0;QA=392;QR=3747;RO=95;RPL=0;RPP=24.725;RPPR=209.3;RPR=10;RUN=1;SAF=10;SAP=24.725;SAR=0;SRF=95;SRP=209.3;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:56:46,10:46:1826:10:392:-18.7778,0,-147.7 0/0:18:18,0:18:690:0:0:0,-5.41854,-62.4246 0/0:31:31,0:31:1231:0:0:0,-9.33193,-111.063 dDocent_Contig_8556 147 . A G 258.294 . AB=0.34375;ABP=9.79615;AC=2;AF=0.333333;AN=6;AO=11;CIGAR=1X;DP=41;DPB=41;DPRA=1.77778;EPP=26.8965;EPPR=68.1545;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=0;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=425;QR=1186;RO=30;RPL=0;RPP=26.8965;RPPR=68.1545;RPR=11;RUN=1;SAF=0;SAP=26.8965;SAR=11;SRF=0;SRP=68.1545;SRR=30;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:23:18,5:18:719:5:198:-11.2728,0,-58.1098 0/1:9:3,6:3:109:6:227:-18.0795,0,-7.4547 0/0:9:9,0:9:358:0:0:0,-2.70927,-32.5826 dDocent_Contig_8558 17 . C T 932.905 . AB=0.0645161;ABP=54.0749;AC=0;AF=0;AN=6;AO=2;CIGAR=2X;DP=106;DPB=106;DPRA=0;EPP=7.35324;EPPR=148.499;GTI=0;LEN=1;MEANALT=2;MQM=60;MQMR=60;NS=3;NUMALT=2;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=82;QR=2685;RO=67;RPL=0;RPP=7.35324;RPPR=148.499;RPR=2;RUN=1;SAF=2;SAP=7.35324;SAR=0;SRF=67;SRP=148.499;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|0:62:35,0,26:35:1410:0,26:0,1041:-75.2082,-85.7443,-201.959,0,-116.206,-108.379 0|0:13:11,0,2:11:440:0,2:0,75:-3.20541,-6.51674,-42.7829,0,-36.6447,-36.0426 0|0:31:21,2,8:21:835:2,8:82,324:-20.3909,-19.9433,-88.0818,0,-61.9654,-66.3264 dDocent_Contig_8559 10 . G A 918.257 . AB=0.187023;ABP=225.926;AC=3;AF=0.5;AN=6;AO=49;CIGAR=1X;DP=262;DPB=262;DPRA=0;EPP=109.412;EPPR=465.534;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=1947;QR=8474;RO=213;RPL=0;RPP=109.412;RPPR=465.534;RPR=49;RUN=1;SAF=49;SAP=109.412;SAR=0;SRF=213;SRP=465.534;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:152:126,26:126:5001:26:1036:-47.7743,0,-404.222 0/1:25:16,9:16:637:9:350:-24.3311,0,-50.1394 0/1:85:71,14:71:2836:14:561:-25.2431,0,-229.754 dDocent_Contig_8561 8 . C T 2544.17 . AB=0.127273;ABP=69.3784;AC=1;AF=0.166667;AN=6;AO=7;CIGAR=1X3M1X;DP=157;DPB=157;DPRA=0;EPP=18.2106;EPPR=61.6401;GTI=0;LEN=1;MEANALT=3;MQM=25.8571;MQMR=58.2222;NS=3;NUMALT=3;ODDS=0;PAIRED=0;PAIREDR=0.703704;PAO=0;PQA=0;PQR=0;PRO=0;QA=270;QR=1044;RO=27;RPL=0;RPP=18.2106;RPPR=61.6401;RPR=7;RUN=1;SAF=7;SAP=18.2106;SAR=0;SRF=27;SRP=61.6401;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|0:69:11,0,1,57:11:432:0,1,57:0,41,2115:-137.236,-140.547,-176.093,-139.143,-174.688,-174.387,0,-35.7172,-34.3276,-18.5585 0|0:33:12,0,1,19:12:456:0,1,19:0,41,679:-39.8169,-43.4293,-80.8175,-42.0274,-79.415,-79.1139,0,-37.466,-36.0726,-31.7465 1|0:55:4,7,7,37:4:156:7,7,37:270,279,1401:-82.8328,-70.3213,-81.0198,-74.2106,-73.3036,-84.9083,-0.880648,0,-3.91866,-2.57565 dDocent_Contig_8562 9 . A C 3925.52 . AB=0.0858896;ABP=245.802;AC=3;AF=0.5;AN=6;AO=14;CIGAR=1X4M;DP=193;DPB=193;DPRA=0;EPP=33.4109;EPPR=70.3259;GTI=0;LEN=1;MEANALT=5.5;MQM=60;MQMR=60;NS=3;NUMALT=3;ODDS=2.77556e-17;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=544;QR=1211;RO=31;RPL=0;RPP=33.4109;RPPR=70.3259;RPR=14;RUN=1;SAF=14;SAP=33.4109;SAR=0;SRF=31;SRP=70.3259;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|1:119:13,5,86,10:13:510:5,86,10:196,3301,389:-267.023,-254.819,-295.257,0,-25.826,-16.0557,-238.967,-264.792,-9.975,-277.9 0|1:30:4,3,19,0:4:160:3,19,0:112,716,0:-57.4529,-49.6473,-61.9274,0,-4.18317,-7.46632,-58.657,-62.8305,-13.1859,-71.8401 0|1:44:14,0,24,4:14:541:0,24,4:0,946,155:-73.599,-77.8134,-122.244,0,-44.4288,-37.2041,-65.0802,-109.51,-31.6948,-108.306 dDocent_Contig_8563 18 . T C 347.368 . AB=0.615385;ABP=4.51363;AC=3;AF=0.5;AN=6;AO=13;CIGAR=1X;DP=50;DPB=50;DPRA=0;EPP=31.2394;EPPR=83.3548;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=0.692308;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=518;QR=1454;RO=37;RPL=0;RPP=31.2394;RPPR=83.3548;RPR=13;RUN=1;SAF=13;SAP=31.2394;SAR=0;SRF=37;SRP=83.3548;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:34:32,2:32:1256:2:80:0,-2.64344,-105.71 1/1:3:0,3:0:0:3:120:-11.1873,-0.90309,0 0/1:13:5,8:5:198:8:318:-25.0722,0,-14.2842 dDocent_Contig_8564 10 . G A 2508.62 . AB=0.0672269;ABP=390.189;AC=0;AF=0;AN=6;AO=16;CIGAR=1X3M1X;DP=238;DPB=238.8;DPRA=0;EPP=37.7539;EPPR=276.616;GTI=0;LEN=1;MEANALT=3;MQM=60;MQMR=60;NS=3;NUMALT=2;ODDS=2.77556e-17;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=624;QR=4987;RO=126;RPL=0;RPP=37.7539;RPPR=276.616;RPR=16;RUN=1;SAF=16;SAP=37.7539;SAR=0;SRF=126;SRP=276.616;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|0:158:104,8,41:104:4118:8,41:318,1653:-104.484,-109.61,-446.119,0,-312.738,-326.578 0|0:14:2,2,10:2:80:2,10:80,399:-32.2542,-26.2661,-32.2544,0,-0.000215363,-3.57987 0|0:66:20,6,38:20:789:6,38:226,1524:-119.519,-107.025,-170.13,0,-46.4082,-53.4825 dDocent_Contig_8565 110 . T C 84.1193 . AB=0.444444;ABP=3.25157;AC=1;AF=0.166667;AN=6;AO=4;CIGAR=1X;DP=31;DPB=31;DPRA=0.818182;EPP=11.6962;EPPR=61.6401;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=140;QR=939;RO=27;RPL=0;RPP=11.6962;RPPR=61.6401;RPR=4;RUN=1;SAF=0;SAP=11.6962;SAR=4;SRF=0;SRP=61.6401;SRR=27;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:19:19,0:19:661:0:0:0,-5.71957,-59.8152 0/0:3:3,0:3:105:0:0:0,-0.90309,-9.79616 0/1:9:5,4:5:173:4:140:-10.2357,0,-13.2009 dDocent_Contig_8566 18 . C T 115.354 . AB=0.8;ABP=6.91895;AC=1;AF=0.166667;AN=6;AO=4;CIGAR=1X;DP=33;DPB=33;DPRA=0.357143;EPP=3.0103;EPPR=65.983;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=0;PAIREDR=0.793103;PAO=0;PQA=0;PQR=0;PRO=0;QA=157;QR=1157;RO=29;RPL=0;RPP=11.6962;RPPR=65.983;RPR=4;RUN=1;SAF=2;SAP=3.0103;SAR=2;SRF=29;SRP=65.983;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:5:1,4:1:39:4:157:-13.0031,0,-2.39141 0/0:13:13,0:13:516:0:0:0,-3.91339,-46.7871 0/0:15:15,0:15:602:0:0:0,-4.51545,-54.5185 dDocent_Contig_8567 18 . G C 277.105 . AB=0.186047;ABP=76.6384;AC=3;AF=0.5;AN=6;AO=16;CIGAR=1X;DP=86;DPB=86;DPRA=0;EPP=37.7539;EPPR=155.013;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=644;QR=2832;RO=70;RPL=0;RPP=37.7539;RPPR=155.013;RPR=16;RUN=1;SAF=16;SAP=37.7539;SAR=0;SRF=70;SRP=155.013;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:49:42,7:42:1692:7:282:-11.001,0,-137.747 0/1:4:3,1:3:123:1:41:-2.89045,0,-10.2607 0/1:33:25,8:25:1017:8:321:-19.3237,0,-81.8879 dDocent_Contig_8568 10 . G T 126.501 . AB=0.166667;ABP=55.1256;AC=2;AF=0.333333;AN=6;AO=9;CIGAR=1X;DP=57;DPB=57;DPRA=9;EPP=22.5536;EPPR=107.241;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=3.46945e-18;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=352;QR=1871;RO=48;RPL=0;RPP=22.5536;RPPR=107.241;RPR=9;RUN=1;SAF=9;SAP=22.5536;SAR=0;SRF=48;SRP=107.241;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:41:36,5:36:1392:5:189:-5.02762,0,-113.194 0/0:3:3,0:3:117:0:0:0,-0.90309,-10.9098 0/1:13:9,4:9:362:4:163:-11.145,0,-29.0306 dDocent_Contig_8569 8 . C T 1216.8 . AB=0.153846;ABP=43.6001;AC=0;AF=0;AN=6;AO=6;CIGAR=1X1M1X;DP=74;DPB=74;DPRA=0;EPP=16.0391;EPPR=55.1256;GTI=0;LEN=1;MEANALT=2;MQM=14.6667;MQMR=60;NS=3;NUMALT=2;ODDS=0;PAIRED=0;PAIREDR=0.625;PAO=0;PQA=0;PQR=0;PRO=0;QA=224;QR=923;RO=24;RPL=0;RPP=16.0391;RPPR=55.1256;RPR=6;RUN=1;SAF=6;SAP=16.0391;SAR=0;SRF=24;SRP=55.1256;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|0:39:10,6,23:10:386:6,23:224,920:-70.3543,-67.3308,-97.2254,0,-25.8571,-24.9272 0|0:14:9,0,5:9:349:0,5:0,191:-9.40166,-12.1109,-40.8439,0,-29.0616,-27.5565 0|0:21:5,0,16:5:188:0,16:0,644:-47.4464,-48.9516,-64.3555,0,-15.7785,-10.962 dDocent_Contig_8570 66 . C T 291.226 . AB=0.309524;ABP=16.2459;AC=2;AF=0.333333;AN=6;AO=13;CIGAR=1X1M1X;DP=296;DPB=296;DPRA=0.0826772;EPP=31.2394;EPPR=615.366;GTI=0;LEN=1;MEANALT=1;MQM=54.4615;MQMR=59.8298;NS=3;NUMALT=1;ODDS=3.46945e-18;PAIRED=0;PAIREDR=0.93617;PAO=0;PQA=0;PQR=0;PRO=0;QA=504;QR=10756;RO=282;RPL=13;RPP=31.2394;RPPR=615.366;RPR=0;RUN=1;SAF=13;SAP=31.2394;SAR=0;SRF=282;SRP=615.366;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|1:29:21,8:21:803:8:306:-18.3615,0,-63.8612 0|0:254:253,0:253:9639:0:0:0,-76.1606,-865.967 0|1:13:8,5:8:314:5:198:-14.284,0,-24.7118 dDocent_Contig_8571 27 . C T 89.3832 . AB=0.192308;ABP=24.391;AC=1;AF=0.166667;AN=6;AO=5;CIGAR=1X;DP=58;DPB=58;DPRA=1.625;EPP=13.8677;EPPR=118.098;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=199;QR=2104;RO=53;RPL=0;RPP=13.8677;RPPR=118.098;RPR=5;RUN=1;SAF=5;SAP=13.8677;SAR=0;SRF=53;SRP=118.098;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:26:21,5:21:825:5:199:-10.4612,0,-66.7309 0/0:13:13,0:13:516:0:0:0,-3.91339,-46.7871 0/0:19:19,0:19:763:0:0:0,-5.71957,-68.99 dDocent_Contig_8572 54 . G T 255.944 . AB=0.225806;ABP=43.4978;AC=2;AF=0.333333;AN=6;AO=14;CIGAR=1X;DP=64;DPB=64;DPRA=15.5;EPP=33.4109;EPPR=111.584;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=523;QR=1836;RO=50;RPL=14;RPP=33.4109;RPPR=111.584;RPR=0;RUN=1;SAF=14;SAP=33.4109;SAR=0;SRF=50;SRP=111.584;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:34:27,7:27:980:7:258:-13.3362,0,-78.2646 0/0:2:2,0:2:77:0:0:0,-0.60206,-7.30883 0/1:28:21,7:21:779:7:265:-15.7807,0,-62.0025 dDocent_Contig_8575 62 . T C 721.414 . AB=0.5;ABP=3.0103;AC=3;AF=0.5;AN=6;AO=25;CIGAR=1X;DP=50;DPB=50;DPRA=0;EPP=57.2971;EPPR=57.2971;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=0.96;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=1018;QR=995;RO=25;RPL=25;RPP=57.2971;RPPR=57.2971;RPR=0;RUN=1;SAF=25;SAP=57.2971;SAR=0;SRF=25;SRP=57.2971;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:30:12,18:12:473:18:736:-57.5314,0,-33.8869 0/1:6:4,2:4:157:2:80:-5.78539,0,-12.7022 0/1:14:9,5:9:365:5:202:-14.3474,0,-29.0001 dDocent_Contig_8577 73 . T G 3313.27 . AB=0.866279;ABP=203.442;AC=4;AF=0.666667;AN=6;AO=173;CIGAR=1X;DP=201;DPB=201;DPRA=0;EPP=378.675;EPPR=63.8115;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=0.976879;PAIREDR=0.964286;PAO=0;PQA=0;PQR=0;PRO=0;QA=4374;QR=759;RO=28;RPL=173;RPP=378.675;RPPR=63.8115;RPR=0;RUN=1;SAF=173;SAP=378.675;SAR=0;SRF=28;SRP=63.8115;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:119:15,104:15:416:104:2753:-212.168,0,-1.8833 1/1:29:5,24:5:86:24:517:-38.8287,-0.819208,0 0/1:53:8,45:8:257:45:1104:-83.6379,0,-7.48836 dDocent_Contig_8578 45 . T C 1535.84 . AB=0.433071;ABP=7.95168;AC=3;AF=0.5;AN=6;AO=55;CIGAR=1X;DP=127;DPB=127;DPRA=0;EPP=122.441;EPPR=159.356;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=2182;QR=2873;RO=72;RPL=0;RPP=122.441;RPPR=159.356;RPR=55;RUN=1;SAF=55;SAP=122.441;SAR=0;SRF=72;SRP=159.356;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:82:58,24:58:2320:24:931:-59.4002,0,-184.271 0/1:9:6,3:6:241:3:118:-8.29293,0,-19.357 0/1:36:8,28:8:312:28:1133:-91.414,0,-17.6027 dDocent_Contig_8579 95 . T C 300.836 . AB=0.346939;ABP=12.9813;AC=3;AF=0.5;AN=6;AO=17;CIGAR=1X;DP=49;DPB=49;DPRA=0;EPP=39.9253;EPPR=72.4974;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=0.882353;PAIREDR=0.96875;PAO=0;PQA=0;PQR=0;PRO=0;QA=537;QR=812;RO=32;RPL=17;RPP=39.9253;RPPR=72.4974;RPR=0;RUN=1;SAF=17;SAP=39.9253;SAR=0;SRF=32;SRP=72.4974;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:23:20,3:20:507:3:84:-0.913742,0,-38.9545 0/1:14:3,11:3:79:11:353:-27.867,0,-3.15834 0/1:12:9,3:9:226:3:100:-5.71801,0,-16.9771 dDocent_Contig_8580 30 . T C 61.4496 . AB=0.272727;ABP=7.94546;AC=1;AF=0.166667;AN=6;AO=4;CIGAR=1X;DP=61;DPB=61;DPRA=0.62963;EPP=11.6962;EPPR=126.784;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=0.964912;PAO=0;PQA=0;PQR=0;PRO=0;QA=155;QR=1984;RO=57;RPL=0;RPP=11.6962;RPPR=126.784;RPR=4;RUN=1;SAF=4;SAP=11.6962;SAR=0;SRF=57;SRP=126.784;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:23:22,1:22:742:1:34:0,-3.52478,-63.6816 0/0:27:27,0:27:958:0:0:0,-8.12781,-86.5233 0/1:11:8,3:8:284:3:121:-7.96887,0,-22.5907 dDocent_Contig_8582 195 . G A 85.6112 . AB=0.266667;ABP=10.1038;AC=1;AF=0.166667;AN=6;AO=4;CIGAR=1X;DP=33;DPB=33;DPRA=1.66667;EPP=11.6962;EPPR=49.8093;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=56.5862;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=0.862069;PAO=0;PQA=0;PQR=0;PRO=0;QA=158;QR=1151;RO=29;RPL=4;RPP=11.6962;RPPR=65.983;RPR=0;RUN=1;SAF=0;SAP=11.6962;SAR=4;SRF=2;SRP=49.8093;SRR=27;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:15:11,4:11:437:4:158:-10.0839,0,-35.166 0/0:4:4,0:4:145:0:0:0,-1.20412,-8.41351 0/0:14:14,0:14:569:0:0:0,-4.21442,-51.5519 dDocent_Contig_8583 78 . G A 3344.64 . AB=0.756098;ABP=73.08;AC=4;AF=0.666667;AN=6;AO=106;CIGAR=1X;DP=136;DPB=136;DPRA=0;EPP=233.186;EPPR=68.1545;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=4158;QR=1115;RO=30;RPL=106;RPP=233.186;RPPR=68.1545;RPR=0;RUN=1;SAF=106;SAP=233.186;SAR=0;SRF=30;SRP=68.1545;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:66:13,53:13:487:53:2125:-171.555,0,-24.2925 1/1:13:0,13:0:0:13:520:-47.1466,-3.91339,0 0/1:57:17,40:17:628:40:1513:-119.285,0,-39.6909 dDocent_Contig_8584 20 . T C 874.845 . AB=0.431818;ABP=4.78696;AC=4;AF=0.666667;AN=6;AO=29;CIGAR=1X;DP=54;DPB=54;DPRA=0;EPP=65.983;EPPR=57.2971;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=1144;QR=970;RO=25;RPL=0;RPP=65.983;RPPR=57.2971;RPR=29;RUN=1;SAF=29;SAP=65.983;SAR=0;SRF=25;SRP=57.2971;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:37:19,18:19:736:18:708:-52.91,0,-55.4298 0/1:7:6,1:6:234:1:40:-1.88847,0,-19.3236 1/1:10:0,10:0:0:10:396:-35.9978,-3.0103,0 dDocent_Contig_8585 36 . C T 30.5899 . AB=0.222222;ABP=9.04217;AC=1;AF=0.166667;AN=6;AO=2;CIGAR=1X;DP=116;DPB=116;DPRA=0.168224;EPP=7.35324;EPPR=250.558;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=80;QR=4473;RO=114;RPL=0;RPP=7.35324;RPPR=250.558;RPR=2;RUN=1;SAF=2;SAP=7.35324;SAR=0;SRF=114;SRP=250.558;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:73:73,0:73:2867:0:0:0,-21.9752,-258.17 0/1:9:7,2:7:274:2:80:-4.88252,0,-22.3185 0/0:34:34,0:34:1332:0:0:0,-10.235,-120.15 dDocent_Contig_8586 22 . C T 790.357 . AB=0.534884;ABP=3.46479;AC=4;AF=0.666667;AN=6;AO=26;CIGAR=1X;DP=46;DPB=46;DPRA=0;EPP=59.4686;EPPR=46.4397;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=1049;QR=812;RO=20;RPL=0;RPP=59.4686;RPPR=46.4397;RPR=26;RUN=1;SAF=26;SAP=59.4686;SAR=0;SRF=20;SRP=46.4397;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:32:13,19:13:526:19:768:-59.8078,0,-38.0535 1/1:3:0,3:0:0:3:119:-11.095,-0.90309,0 0/1:11:7,4:7:286:4:162:-11.6556,0,-22.8035 dDocent_Contig_8587 29 . A G 502.207 . AB=0.365385;ABP=11.1951;AC=2;AF=0.333333;AN=6;AO=20;CIGAR=1X;DP=72;DPB=72;DPRA=0;EPP=46.4397;EPPR=115.927;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=804;QR=2058;RO=52;RPL=0;RPP=46.4397;RPPR=115.927;RPR=20;RUN=1;SAF=20;SAP=46.4397;SAR=0;SRF=52;SRP=115.927;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:39:23,16:23:916:16:640:-46.1922,0,-70.9998 0/1:13:10,3:10:398:3:123:-7.5514,0,-32.2651 0/0:20:19,1:19:744:1:41:0,-1.92603,-63.1842 dDocent_Contig_8588 143 . G C 111.016 . AB=0.625;ABP=4.09604;AC=1;AF=0.166667;AN=6;AO=5;CIGAR=1X3M2X;DP=41;DPB=41;DPRA=0.727273;EPP=13.8677;EPPR=74.6689;GTI=0;LEN=1;MEANALT=1;MQM=40;MQMR=60;NS=3;NUMALT=2;ODDS=0;PAIRED=0;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=172;QR=1267;RO=33;RPL=0;RPP=13.8677;RPPR=74.6689;RPR=5;RUN=1;SAF=0;SAP=13.8677;SAR=5;SRF=0;SRP=74.6689;SRR=33;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|0:22:19,0,2:19:723:0,2:0,77:-0.719839,-6.43941,-65.827,0,-59.5927,-58.9906 0|0:11:11,0,0:11:425:0,0:0,0:0,-3.31133,-38.5999,-3.31133,-38.5999,-38.5999 0|1:8:3,5,0:3:119:5,0:172,0:-12.918,0,-8.68715,-13.8211,-10.1923,-23.6408 dDocent_Contig_8589 19 . C G 412.014 . AB=0.217949;ABP=56.9074;AC=2;AF=0.333334;AN=6;AO=17;CIGAR=1X1M1X3M;DP=83;DPB=83;DPRA=7.8;EPP=39.9253;EPPR=131.127;GTI=0;LEN=1;MEANALT=2.5;MQM=56;MQMR=60;NS=3;NUMALT=3;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=656;QR=2313;RO=59;RPL=0;RPP=39.9253;RPPR=131.127;RPR=17;RUN=1;SAF=17;SAP=39.9253;SAR=0;SRF=59;SRP=131.127;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|1:47:27,0,16,3:27:1075:0,16,3:0,619,115:-42.6447,-50.7725,-139.3,0,-88.5336,-83.7171,-41.3349,-129.862,-79.097,-128.959 0|0:5:5,0,0,0:5:198:0,0,0:0,0,0:0,-1.50515,-18.1965,-1.50515,-18.1965,-18.1965,-1.50515,-18.1965,-18.1965,-18.1965 0|1:31:27,3,1,0:27:1040:3,1,0:120,37,0:-1.78002,0,-84.4992,-6.89127,-82.3787,-91.9644,-9.90783,-85.4023,-92.2654,-95.289 dDocent_Contig_8590 9 . A T 214.471 . AB=0.0641026;ABP=131.74;AC=0;AF=0;AN=6;AO=5;CIGAR=1M3I1X1M1X4M1X19M1X;DP=108;DPB=108.276;DPRA=1.3;EPP=13.8677;EPPR=113.755;GTI=0;LEN=1;MEANALT=7.5;MQM=27;MQMR=60;NS=3;NUMALT=4;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0.5;QA=124;QR=2003;RO=51;RPL=0;RPP=13.8677;RPPR=113.755;RPR=5;RUN=1;SAF=5;SAP=13.8677;SAR=0;SRF=51;SRP=113.755;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|0:54:23,7,2,4,0:23:905:7,2,4,0:267,32,97,0:-14.4988,0,-72.4316,-19.6841,-72.8002,-93.5914,-14.6342,-67.7546,-87.41,-87.9443,-21.4225,-74.5388,-94.1935,-89.1484,-95.9327 0|0:24:6,2,0,1,4:6:240:2,0,1,4:72,0,27,153:-10.4712,-6.49745,-25.6854,-12.2774,-26.2875,-32.065,-10.4243,-24.4342,-30.2113,-29.9103,0,-14.0165,-19.7948,-17.9418,-18.5907 0|0:30:22,0,0,0,0:22:858:0,0,0,0:0,0,0,0:0,-6.62266,-77.193,-6.62266,-77.193,-77.193,-6.62266,-77.193,-77.193,-77.193,-6.62266,-77.193,-77.193,-77.193,-77.193 dDocent_Contig_8591 46 . G A 45.5261 . AB=0.135135;ABP=45.7942;AC=2;AF=0.333333;AN=6;AO=5;CIGAR=1X;DP=44;DPB=44;DPRA=2.64286;EPP=13.8677;EPPR=87.6977;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=204;QR=1553;RO=39;RPL=0;RPP=13.8677;RPPR=87.6977;RPR=5;RUN=1;SAF=5;SAP=13.8677;SAR=0;SRF=39;SRP=87.6977;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:30:27,3:27:1079:3:122:-2.34159,0,-88.3667 0/1:7:5,2:5:197:2:82:-5.67247,0,-15.9985 0/0:7:7,0:7:277:0:0:0,-2.10721,-25.2997 dDocent_Contig_8592 13 . A C 260.967 . AB=0.216216;ABP=54.7735;AC=2;AF=0.333333;AN=6;AO=16;CIGAR=2X;DP=90;DPB=90;DPRA=2.3125;EPP=29.6108;EPPR=3.75395;GTI=0;LEN=1;MEANALT=1.5;MQM=45.1875;MQMR=41.9452;NS=3;NUMALT=1;ODDS=0;PAIRED=0.0625;PAIREDR=0.369863;PAO=0;PQA=0;PQR=0;PRO=0;QA=578;QR=2803;RO=73;RPL=0;RPP=37.7539;RPPR=161.528;RPR=16;RUN=1;SAF=1;SAP=29.6108;SAR=15;SRF=39;SRP=3.75395;SRR=34;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|1:48:38,9:38:1466:9:323:-14.497,0,-82.3945 0|0:16:16,0:16:618:0:0:0,-4.81648,-55.3702 0|1:26:19,7:19:719:7:255:-15.1226,0,-37.2652 dDocent_Contig_8593 9 . A G 116.04 . AB=0.027027;ABP=146.797;AC=0;AF=0;AN=6;AO=12;CIGAR=1X2M2X;DP=273;DPB=273;DPRA=0;EPP=29.068;EPPR=446.155;GTI=0;LEN=1;MEANALT=6;MQM=60;MQMR=60;NS=3;NUMALT=4;ODDS=2.77556e-17;PAIRED=0;PAIREDR=0.122642;PAO=0;PQA=0;PQR=0;PRO=0;QA=459;QR=8270;RO=212;RPL=0;RPP=29.068;RPPR=463.362;RPR=12;RUN=1;SAF=12;SAP=29.068;SAR=0;SRF=210;SRP=446.155;SRR=2;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|0:129:107,6,1,2,7:107:4178:6,1,2,7:219,41,82,275:0,-14.334,-355.973,-28.825,-354.395,-371.977,-25.4397,-351.011,-365.509,-368.292,-9.59032,-335.162,-349.661,-346.276,-350.938 0|0:70:49,4,4,4,4:49:1912:4,4,4,4:160,161,161,164:0,-1.57081,-157.523,-1.4818,-145.458,-157.435,-1.48143,-145.458,-145.369,-157.435,-1.21248,-145.19,-145.102,-145.101,-157.167 0|0:74:56,2,9,2,0:56:2180:2,9,2,0:80,367,77,0:-13.4277,-23.6953,-202.242,0,-172.563,-176.444,-23.9652,-196.522,-172.831,-202.51,-30.2853,-202.844,-179.153,-203.112,-209.434 dDocent_Contig_8594 115 . C A 114.095 . AB=0.232143;ABP=37.909;AC=3;AF=0.5;AN=6;AO=13;CIGAR=1X;DP=56;DPB=56;DPRA=0;EPP=31.2394;EPPR=96.3836;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=366;QR=1456;RO=43;RPL=0;RPP=31.2394;RPPR=96.3836;RPR=13;RUN=1;SAF=0;SAP=31.2394;SAR=13;SRF=0;SRP=96.3836;SRR=43;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:17:13,4:13:448:4:87:-2.92771,0,-35.5319 0/1:13:9,4:9:295:4:133:-8.38558,0,-22.9558 0/1:26:21,5:21:713:5:146:-5.60226,0,-56.6595 dDocent_Contig_8595 37 . C T 245.963 . AB=0.285714;ABP=19.7617;AC=2;AF=0.333333;AN=6;AO=12;CIGAR=1X;DP=49;DPB=49;DPRA=3;EPP=29.068;EPPR=83.3548;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=3.46945e-18;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=445;QR=1489;RO=37;RPL=0;RPP=29.068;RPPR=83.3548;RPR=12;RUN=1;SAF=12;SAP=29.068;SAR=0;SRF=37;SRP=83.3548;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:19:14,5:14:555:5:182:-11.0148,0,-44.5713 0/0:7:7,0:7:285:0:0:0,-2.10721,-26.0244 0/1:23:16,7:16:649:7:263:-17.1044,0,-51.82 dDocent_Contig_8598 24 . G T 50.8026 . AB=0.230769;ABP=11.1951;AC=1;AF=0.166667;AN=6;AO=3;CIGAR=1X;DP=35;DPB=35;DPRA=1.18182;EPP=9.52472;EPPR=72.4974;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=56.625;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=116;QR=1256;RO=32;RPL=0;RPP=9.52472;RPPR=72.4974;RPR=3;RUN=1;SAF=3;SAP=9.52472;SAR=0;SRF=32;SRP=72.4974;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:16:16,0:16:613:0:0:0,-4.81648,-55.4946 0/0:6:6,0:6:235:0:0:0,-1.80618,-15.5683 0/1:13:10,3:10:408:3:116:-6.90415,0,-33.1672 dDocent_Contig_8600 37 . G C 346.402 . AB=0.258065;ABP=34.5317;AC=3;AF=0.5;AN=6;AO=16;CIGAR=1X;DP=62;DPB=62;DPRA=0;EPP=37.7539;EPPR=102.898;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=641;QR=1849;RO=46;RPL=0;RPP=37.7539;RPPR=102.898;RPR=16;RUN=1;SAF=16;SAP=37.7539;SAR=0;SRF=46;SRP=102.898;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:30:26,4:26:1038:4:161:-5.84458,0,-84.6816 0/1:16:9,7:9:367:7:277:-20.4819,0,-28.5786 0/1:16:11,5:11:444:5:203:-13.8366,0,-35.4988 dDocent_Contig_8602 58 . A T 59.6759 . AB=0.128571;ABP=86.8912;AC=3;AF=0.5;AN=6;AO=9;CIGAR=1X;DP=70;DPB=70;DPRA=0;EPP=22.5536;EPPR=135.47;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=0.444444;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=348;QR=2450;RO=61;RPL=9;RPP=22.5536;RPPR=135.47;RPR=0;RUN=1;SAF=9;SAP=22.5536;SAR=0;SRF=61;SRP=135.47;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:48:42,6:42:1687:6:226:-6.24766,0,-137.607 0/1:6:5,1:5:201:1:41:-2.28839,0,-16.6643 0/1:16:14,2:14:562:2:81:-2.86925,0,-46.1073 dDocent_Contig_8604 22 . T C 220.191 . AB=0.196721;ABP=51.7438;AC=2;AF=0.5;AN=4;AO=12;CIGAR=1X;DP=61;DPB=61;DPRA=0;EPP=29.068;EPPR=109.412;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=2;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=472;QR=1907;RO=49;RPL=0;RPP=29.068;RPPR=109.412;RPR=12;RUN=1;SAF=12;SAP=29.068;SAR=0;SRF=49;SRP=109.412;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:40:30,10:30:1194:10:393:-23.6867,0,-95.7018 ./.:.:.:.:.:.:.:. 0/1:21:19,2:19:713:2:79:-1.176,0,-58.1695 dDocent_Contig_8605 22 . T C 69.3236 . AB=0.333333;ABP=5.18177;AC=1;AF=0.166667;AN=6;AO=3;CIGAR=1X;DP=35;DPB=35;DPRA=0.692308;EPP=9.52472;EPPR=72.4974;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=123;QR=1253;RO=32;RPL=0;RPP=9.52472;RPPR=72.4974;RPR=3;RUN=1;SAF=3;SAP=9.52472;SAR=0;SRF=32;SRP=72.4974;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:25:25,0:25:972:0:0:0,-7.52575,-87.7722 0/0:1:1,0:1:38:0:0:0,-0.30103,-3.79727 0/1:9:6,3:6:243:3:123:-8.75552,0,-19.5389 dDocent_Contig_8607 15 . T G 553.926 . AB=0.293103;ABP=24.5753;AC=1;AF=0.25;AN=4;AO=17;CIGAR=5M1X6M;DP=58;DPB=59.1667;DPRA=0;EPP=39.9253;EPPR=61.6401;GTI=0;LEN=1;MEANALT=1.5;MQM=60;MQMR=60;NS=2;NUMALT=2;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=684;QR=1071;RO=27;RPL=0;RPP=39.9253;RPPR=61.6401;RPR=17;RUN=1;SAF=17;SAP=39.9253;SAR=0;SRF=27;SRP=61.6401;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|0:45:21,14,10:21:836:14,10:545,404:-37.4345,0,-64.6198,-10.4404,-35.5261,-76.2784 .:.:.:.:.:.:.:. 0|1:13:6,0,7:6:235:0,7:0,280:-21.6571,-23.4632,-42.7824,0,-19.7142,-17.607 dDocent_Contig_8608 60 . C T 168.545 . AB=0.35;ABP=6.91895;AC=1;AF=0.25;AN=4;AO=7;CIGAR=1X;DP=27;DPB=27;DPRA=2.85714;EPP=18.2106;EPPR=46.4397;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=2;NUMALT=1;ODDS=0;PAIRED=0.571429;PAIREDR=0.8;PAO=0;PQA=0;PQR=0;PRO=0;QA=269;QR=798;RO=20;RPL=7;RPP=18.2106;RPPR=46.4397;RPR=0;RUN=1;SAF=7;SAP=18.2106;SAR=0;SRF=20;SRP=46.4397;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:20:13,7:13:517:7:269:-18.5534,0,-40.8511 ./.:.:.:.:.:.:.:. 0/0:7:7,0:7:281:0:0:0,-2.10721,-25.662 dDocent_Contig_8610 1 . N G 68.3781 . AB=0;ABP=0;AC=2;AF=1;AN=2;AO=2;CIGAR=1X;DP=2;DPB=2;DPRA=0;EPP=7.35324;EPPR=0;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=0;NS=1;NUMALT=1;ODDS=5.99146;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=72;QR=0;RO=0;RPL=0;RPP=7.35324;RPPR=0;RPR=2;RUN=1;SAF=0;SAP=7.35324;SAR=2;SRF=0;SRP=0;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 1/1:2:0,2:0:0:2:72:-6.83672,-0.60206,0 ./.:.:.:.:.:.:.:. ./.:.:.:.:.:.:.:. dDocent_Contig_8611 36 . C T 159.932 . AB=0.235294;ABP=23.7032;AC=2;AF=0.333333;AN=6;AO=8;CIGAR=1X;DP=35;DPB=35;DPRA=17;EPP=20.3821;EPPR=61.6401;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=322;QR=1094;RO=27;RPL=0;RPP=20.3821;RPPR=61.6401;RPR=8;RUN=1;SAF=8;SAP=20.3821;SAR=0;SRF=27;SRP=61.6401;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:21:17,4:17:693:4:159:-8.37032,0,-56.3762 0/0:1:1,0:1:40:0:0:0,-0.30103,-3.99568 0/1:13:9,4:9:361:4:163:-11.145,0,-28.9402 dDocent_Contig_8612 10 . A T 410.147 . AB=0.189655;ABP=100.053;AC=2;AF=0.333333;AN=6;AO=26;CIGAR=1X;DP=256;DPB=256;DPRA=0;EPP=51.1168;EPPR=502.449;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=0.961538;PAIREDR=0.986957;PAO=0;PQA=0;PQR=0;PRO=0;QA=1036;QR=9251;RO=230;RPL=0;RPP=59.4686;RPPR=502.449;RPR=26;RUN=1;SAF=25;SAP=51.1168;SAR=1;SRF=230;SRP=502.449;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:140:136,4:136:5457:4:161:0,-27.2689,-476.082 0/1:42:31,11:31:1254:11:437:-27.0416,0,-100.484 0/1:74:63,11:63:2540:11:438:-17.496,0,-206.449 dDocent_Contig_8613 113 . A C 144.407 . AB=0.380952;ABP=5.59539;AC=2;AF=0.333333;AN=6;AO=8;CIGAR=1X;DP=27;DPB=27;DPRA=1.75;EPP=20.3821;EPPR=44.2683;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=261;QR=645;RO=19;RPL=0;RPP=20.3821;RPPR=44.2683;RPR=8;RUN=1;SAF=0;SAP=20.3821;SAR=8;SRF=0;SRP=44.2683;SRR=19;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:16:9,7:9:303:7:226:-15.8403,0,-22.7809 0/1:5:4,1:4:134:1:35:-1.99348,0,-10.8862 0/0:6:6,0:6:208:0:0:0,-1.80618,-19.0596 dDocent_Contig_8614 12 . G A 215.195 . AB=0.163043;ABP=93.7401;AC=3;AF=0.5;AN=6;AO=15;CIGAR=1X;DP=92;DPB=92;DPRA=0;EPP=35.5824;EPPR=170.214;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=6.93889e-18;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=594;QR=3100;RO=77;RPL=0;RPP=35.5824;RPPR=170.214;RPR=15;RUN=1;SAF=15;SAP=35.5824;SAR=0;SRF=77;SRP=170.214;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:51:43,8:43:1733:8:314:-13.2717,0,-140.831 0/1:7:6,1:6:244:1:41:-1.98736,0,-20.2316 0/1:34:28,6:28:1123:6:239:-11.6489,0,-91.119 dDocent_Contig_8615 37 . T C 641.101 . AB=0.241667;ABP=72.5698;AC=3;AF=0.5;AN=6;AO=29;CIGAR=1X;DP=120;DPB=120;DPRA=0;EPP=65.983;EPPR=200.614;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=1163;QR=3520;RO=91;RPL=0;RPP=65.983;RPPR=200.614;RPR=29;RUN=1;SAF=29;SAP=65.983;SAR=0;SRF=91;SRP=200.614;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:80:72,8:72:2807:8:324:-5.44679,0,-228.694 0/1:12:9,3:9:329:3:121:-7.66784,0,-26.3353 0/1:28:10,18:10:384:18:718:-56.5183,0,-26.4864 dDocent_Contig_8616 8 . C A 378.472 . AB=0.274194;ABP=30.4689;AC=2;AF=0.333333;AN=6;AO=17;CIGAR=1X;DP=78;DPB=78;DPRA=1.9375;EPP=39.9253;EPPR=135.47;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=659;QR=2344;RO=61;RPL=0;RPP=39.9253;RPPR=135.47;RPR=17;RUN=1;SAF=17;SAP=39.9253;SAR=0;SRF=61;SRP=135.47;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:47:36,11:36:1375:11:427:-24.6366,0,-109.882 0/0:16:16,0:16:622:0:0:0,-4.81648,-56.3201 0/1:15:9,6:9:347:6:232:-16.7335,0,-27.0738 dDocent_Contig_8617 107 . N A 557.07 . AB=0;ABP=0;AC=6;AF=1;AN=6;AO=22;CIGAR=1X4M;DP=25;DPB=25;DPRA=0;EPP=50.7827;EPPR=0;GTI=0;LEN=1;MEANALT=1.33333;MQM=40.8182;MQMR=0;NS=3;NUMALT=2;ODDS=0;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=624;QR=0;RO=0;RPL=0;RPP=50.7827;RPPR=0;RPR=22;RUN=1;SAF=0;SAP=50.7827;SAR=22;SRF=0;SRP=0;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 1|1:8:0,0,8:0:0:0,8:0,229:-20.8058,-20.8058,-20.8058,-2.40824,-2.40824,0 1|1:14:0,3,11:0:0:3,11:100,309:-26.4349,-23.5984,-22.6953,-3.31133,-0.308289,0 1|1:3:0,0,3:0:0:0,3:0,86:-7.98809,-7.98809,-7.98809,-0.90309,-0.90309,0 dDocent_Contig_8618 20 . T C 74.4138 . AB=0.428571;ABP=3.32051;AC=1;AF=0.166667;AN=6;AO=3;CIGAR=1X;DP=35;DPB=35;DPRA=0.5;EPP=9.52472;EPPR=72.4974;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=56.625;NS=3;NUMALT=1;ODDS=0;PAIRED=0;PAIREDR=0.8125;PAO=0;PQA=0;PQR=0;PRO=0;QA=122;QR=1208;RO=32;RPL=0;RPP=9.52472;RPPR=72.4974;RPR=3;RUN=1;SAF=3;SAP=9.52472;SAR=0;SRF=32;SRP=72.4974;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:20:20,0:20:771:0:0:0,-6.0206,-69.7173 0/1:7:4,3:4:151:3:122:-9.26528,0,-11.8496 0/0:8:8,0:8:286:0:0:0,-2.40824,-20.3326 dDocent_Contig_8620 16 . T C 50.1701 . AB=0.2;ABP=14.7363;AC=1;AF=0.166667;AN=6;AO=3;CIGAR=1X;DP=68;DPB=68;DPRA=0.566038;EPP=9.52472;EPPR=141.985;GTI=0;LEN=1;MEANALT=2;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=123;QR=2574;RO=64;RPL=0;RPP=9.52472;RPPR=141.985;RPR=3;RUN=1;SAF=3;SAP=9.52472;SAR=0;SRF=64;SRP=141.985;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:21:21,0:21:847:0:0:0,-6.32163,-76.5423 0/0:32:32,0:32:1286:0:0:0,-9.63296,-116.005 0/1:15:11,3:11:441:3:123:-6.84091,0,-35.4228 dDocent_Contig_8621 15 . T C 163.939 . AB=0.103704;ABP=371.324;AC=1;AF=0.166667;AN=6;AO=40;CIGAR=1X;DP=503;DPB=503;DPRA=0;EPP=45.5712;EPPR=639.524;GTI=0;LEN=1;MEANALT=1.33333;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=2.77556e-17;PAIRED=0.4;PAIREDR=0.731602;PAO=0;PQA=0;PQR=0;PRO=0;QA=1558;QR=18243;RO=462;RPL=0;RPP=89.8692;RPPR=1006.23;RPR=40;RUN=1;SAF=34;SAP=45.5712;SAR=6;SRF=415;SRP=639.524;SRR=47;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:270:242,28:242:9559:28:1099:-17.9168,0,-778.466 0/0:97:91,6:91:3599:6:239:0,-7.31671,-302.064 0/0:136:129,6:129:5085:6:220:0,-20.8936,-437.372 dDocent_Contig_8622 80 . A T 92.8539 . AB=0.184211;ABP=35.9253;AC=2;AF=0.333333;AN=6;AO=7;CIGAR=1X1M1X;DP=62;DPB=62;DPRA=0.791667;EPP=18.2106;EPPR=122.441;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=3.46945e-18;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=260;QR=2064;RO=55;RPL=7;RPP=18.2106;RPPR=122.441;RPR=0;RUN=1;SAF=7;SAP=18.2106;SAR=0;SRF=55;SRP=122.441;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|0:24:24,0:24:917:0:0:0,-7.22472,-82.8479 0|1:6:5,1:5:193:1:39:-2.09038,0,-15.9346 0|1:32:26,6:26:954:6:221:-10.6138,0,-76.5455 dDocent_Contig_8623 69 . G C 153.197 . AB=0.6;ABP=3.87889;AC=1;AF=0.166667;AN=6;AO=6;CIGAR=1X;DP=41;DPB=41;DPRA=0.645161;EPP=16.0391;EPPR=79.0118;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=0.971429;PAO=0;PQA=0;PQR=0;PRO=0;QA=220;QR=1310;RO=35;RPL=3;RPP=3.0103;RPPR=3.07234;RPR=3;RUN=1;SAF=3;SAP=3.0103;SAR=3;SRF=17;SRP=3.07234;SRR=18;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:19:19,0:19:711:0:0:0,-5.71957,-64.3123 0/0:12:12,0:12:451:0:0:0,-3.61236,-40.9317 0/1:10:4,6:4:148:6:220:-17.1436,0,-10.6708 dDocent_Contig_8624 73 . A C 88.4615 . AB=0.230769;ABP=19.3799;AC=2;AF=0.333333;AN=6;AO=6;CIGAR=1X;DP=28;DPB=28;DPRA=6.5;EPP=16.0391;EPPR=50.7827;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=1.73472e-18;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=216;QR=782;RO=22;RPL=6;RPP=16.0391;RPPR=50.7827;RPR=0;RUN=1;SAF=6;SAP=16.0391;SAR=0;SRF=22;SRP=50.7827;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:12:8,4:8:278:4:146:-9.88535,0,-21.7435 0/0:2:2,0:2:70:0:0:0,-0.60206,-6.64733 0/1:14:12,2:12:434:2:70:-2.43298,0,-35.187 dDocent_Contig_8625 94 . A G 147.692 . AB=0.411765;ABP=4.1599;AC=2;AF=0.333333;AN=6;AO=7;CIGAR=1X;DP=27;DPB=27;DPRA=0.85;EPP=18.2106;EPPR=46.4397;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=232;QR=701;RO=20;RPL=7;RPP=18.2106;RPPR=46.4397;RPR=0;RUN=1;SAF=7;SAP=18.2106;SAR=0;SRF=20;SRP=46.4397;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:10:9,1:9:312:1:35:-0.488329,0,-25.4059 0/0:10:10,0:10:354:0:0:0,-3.0103,-32.2002 0/1:7:1,6:1:35:6:197:-15.9461,0,-1.39142 dDocent_Contig_8626 64 . G A 4199.4 . AB=0.88;ABP=159.791;AC=4;AF=0.666667;AN=6;AO=128;CIGAR=1X;DP=144;DPB=144;DPRA=0;EPP=280.959;EPPR=37.7539;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=6.93889e-18;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=5157;QR=638;RO=16;RPL=128;RPP=280.959;RPPR=37.7539;RPR=0;RUN=1;SAF=128;SAP=280.959;SAR=0;SRF=16;SRP=37.7539;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:96:10,86:10:397:86:3453:-281.909,0,-7.18937 1/1:19:1,18:1:37:18:726:-61.9683,-2.02174,0 0/1:29:5,24:5:204:24:978:-79.5858,0,-10.0142 dDocent_Contig_8627 127 . G A 88.5856 . AB=0;ABP=0;AC=0;AF=0;AN=6;AO=3;CIGAR=3M1X1M;DP=47;DPB=49;DPRA=0;EPP=9.52472;EPPR=68.1545;GTI=0;LEN=1;MEANALT=2.5;MQM=6;MQMR=40.1667;NS=3;NUMALT=3;ODDS=0;PAIRED=0;PAIREDR=0.633333;PAO=0;PQA=0;PQR=0;PRO=0;QA=18;QR=1024;RO=30;RPL=0;RPP=9.52472;RPPR=68.1545;RPR=3;RUN=1;SAF=0;SAP=9.52472;SAR=3;SRF=0;SRP=68.1545;SRR=30;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|0:18:15,0,2,1:15:519:0,2,1:0,48,6:0,-4.51545,-28.8387,-1.22163,-25.6602,-25.0582,-4.55303,-28.8281,-25.6508,-28.5271 0|0:16:11,1,2,2:11:367:1,2,2:18,48,12:0,-2.2547,-26.8306,-0.079252,-23.9587,-24.401,-3.33206,-27.1221,-24.9958,-27.5625 0|0:13:4,9,0,0:4:138:9,0,0:187,0,0:-10.6765,0,-3.48361,-11.8806,-6.19288,-17.8803,-11.8806,-6.19288,-17.8803,-17.8803 dDocent_Contig_8630 71 . C A 176.051 . AB=0.388889;ABP=4.9405;AC=1;AF=0.166667;AN=6;AO=8;CIGAR=1X;DP=41;DPB=41;DPRA=9.75;EPP=20.3821;EPPR=74.6689;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=311;QR=1282;RO=33;RPL=8;RPP=20.3821;RPPR=74.6689;RPR=0;RUN=1;SAF=8;SAP=20.3821;SAR=0;SRF=33;SRP=74.6689;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:21:20,1:20:774:1:39:0,-2.42507,-66.091 0/0:2:2,0:2:79:0:0:0,-0.60206,-7.49763 0/1:18:11,7:11:429:7:272:-19.4287,0,-33.5471 dDocent_Contig_8631 178 . C T 84.4425 . AB=0.25;ABP=11.6962;AC=1;AF=0.166667;AN=6;AO=4;CIGAR=1X;DP=27;DPB=27;DPRA=2.90909;EPP=11.6962;EPPR=52.9542;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=160;QR=875;RO=23;RPL=4;RPP=11.6962;RPPR=52.9542;RPR=0;RUN=1;SAF=0;SAP=11.6962;SAR=4;SRF=0;SRP=52.9542;SRR=23;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:16:12,4:12:447:4:160:-9.96695,0,-35.7421 0/0:3:3,0:3:122:0:0:0,-0.90309,-11.3725 0/0:8:8,0:8:306:0:0:0,-2.40824,-27.8959 dDocent_Contig_8632 40 . T A 30.6826 . AB=0.48;ABP=3.09716;AC=2;AF=0.333333;AN=6;AO=17;CIGAR=1X1M2X;DP=45;DPB=45;DPRA=0;EPP=39.9253;EPPR=59.4686;GTI=0;LEN=1;MEANALT=1.33333;MQM=11.7647;MQMR=60;NS=3;NUMALT=2;ODDS=0;PAIRED=0;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=654;QR=1022;RO=26;RPL=0;RPP=39.9253;RPPR=59.4686;RPR=17;RUN=1;SAF=17;SAP=39.9253;SAR=0;SRF=26;SRP=59.4686;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|1:23:10,2,11:10:390:2,11:36,417:-4.58138,-5.48325,-37.0683,0,-30.1913,-28.9424 0|1:2:1,0,1:1:41:0,1:0,39:-0.696905,-0.997935,-4.5218,0,-3.79354,-3.49251 0|0:20:15,0,5:15:591:0,5:0,198:0,-4.51545,-53.3316,-0.0447738,-49.0568,-47.5517 dDocent_Contig_8633 11 . G C 4143.82 . AB=0.10989;ABP=243.59;AC=1;AF=0.166667;AN=6;AO=20;CIGAR=2X3M;DP=182;DPB=182;DPRA=0;EPP=46.4397;EPPR=44.7026;GTI=0;LEN=1;MEANALT=3.33333;MQM=60;MQMR=60;NS=3;NUMALT=4;ODDS=0;PAIRED=0;PAIREDR=0.7;PAO=0;PQA=0;PQR=0;PRO=0;QA=780;QR=1184;RO=30;RPL=0;RPP=46.4397;RPPR=68.1545;RPR=20;RUN=1;SAF=20;SAP=46.4397;SAR=0;SRF=27;SRP=44.7026;SRR=3;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 1|0:114:3,3,0,14,92:3:120:3,0,14,92:121,0,556,3620:-332.728,-323.657,-332.639,-333.631,-333.542,-343.516,-287.862,-287.773,-297.747,-293.533,-35.8801,-35.7904,-45.7653,0,-18.0705 0|0:34:21,2,0,5,6:21:822:2,0,5,6:73,0,196,237:-13.1858,-13.5476,-80.5269,-19.5074,-81.1289,-87.0916,-3.38817,-65.0114,-70.9738,-69.4687,0,-61.6258,-67.5882,-51.4701,-65.782 0|0:34:6,0,4,1,23:6:242:0,4,1,23:0,162,28,920:-73.9909,-75.7971,-95.7468,-62.4373,-82.3875,-81.1833,-73.5826,-93.5316,-80.1727,-93.2306,0,-19.9612,-6.59587,-17.7537,-13.0375 dDocent_Contig_8634 98 . N T 66.4848 . AB=0;ABP=0;AC=2;AF=1;AN=2;AO=2;CIGAR=1X;DP=2;DPB=2;DPRA=0;EPP=7.35324;EPPR=0;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=0;NS=1;NUMALT=1;ODDS=5.99146;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=70;QR=0;RO=0;RPL=2;RPP=7.35324;RPPR=0;RPR=0;RUN=1;SAF=2;SAP=7.35324;SAR=0;SRF=0;SRP=0;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 1/1:2:0,2:0:0:2:70:-6.6474,-0.60206,0 ./.:.:.:.:.:.:.:. ./.:.:.:.:.:.:.:. dDocent_Contig_8635 18 . A G 786.661 . AB=0.255319;ABP=51.8915;AC=3;AF=0.5;AN=6;AO=24;CIGAR=1M3D1X1M2X;DP=94;DPB=76.75;DPRA=0;EPP=55.1256;EPPR=100.727;GTI=0;LEN=1;MEANALT=2.33333;MQM=60;MQMR=60;NS=3;NUMALT=2;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=950;QR=1773;RO=45;RPL=0;RPP=55.1256;RPPR=100.727;RPR=24;RUN=1;SAF=24;SAP=55.1256;SAR=0;SRF=45;SRP=100.727;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|1:49:15,19,13:15:594:19,13:743,510:-56.5685,0,-43.1713,-19.142,-6.95079,-64.1197 0|1:19:8,3,7:8:321:3,7:116,280:-20.6634,-13.5477,-39.0949,0,-16.9331,-24.3499 0|1:26:22,0,4:22:858:0,4:0,160:-6.95702,-13.5797,-84.0912,0,-70.9095,-69.7054 dDocent_Contig_8636 35 . G A 52.501 . AB=0.146341;ABP=47.552;AC=1;AF=0.166667;AN=6;AO=7;CIGAR=1X;DP=145;DPB=145;DPRA=3.125;EPP=18.2106;EPPR=302.673;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=57.413;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=253;QR=5429;RO=138;RPL=0;RPP=18.2106;RPPR=302.673;RPR=7;RUN=1;SAF=7;SAP=18.2106;SAR=0;SRF=138;SRP=302.673;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:84:83,1:83:3266:1:41:0,-21.192,-275.79 0/0:20:20,0:20:775:0:0:0,-6.0206,-64.6429 0/1:41:35,6:35:1388:6:212:-7.07401,0,-112.84 dDocent_Contig_8637 34 . G A 356.558 . AB=0.274194;ABP=30.4689;AC=3;AF=0.5;AN=6;AO=17;CIGAR=1X;DP=62;DPB=62;DPRA=0;EPP=39.9253;EPPR=100.727;GTI=0;LEN=1;MEANALT=1;MQM=56.7647;MQMR=52.6222;NS=3;NUMALT=1;ODDS=0;PAIRED=0.941176;PAIREDR=0.822222;PAO=0;PQA=0;PQR=0;PRO=0;QA=689;QR=1803;RO=45;RPL=0;RPP=39.9253;RPPR=100.727;RPR=17;RUN=1;SAF=17;SAP=39.9253;SAR=0;SRF=45;SRP=100.727;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:30:22,8:22:889:8:323:-20.4077,0,-65.7773 0/1:12:7,5:7:276:5:204:-11.8246,0,-11.9073 0/1:20:16,4:16:638:4:162:-8.94636,0,-51.7276 dDocent_Contig_8638 4 . T C 62.651 . AB=0;ABP=0;AC=2;AF=1;AN=2;AO=2;CIGAR=1X5I2M1X3M1X2M1X2M1X2M1X;DP=2;DPB=4.23529;DPRA=0;EPP=7.35324;EPPR=0;GTI=0;LEN=1;MEANALT=1;MQM=56;MQMR=0;NS=1;NUMALT=1;ODDS=5.99146;PAIRED=1;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=66;QR=0;RO=0;RPL=0;RPP=7.35324;RPPR=0;RPR=2;RUN=1;SAF=2;SAP=7.35324;SAR=0;SRF=0;SRP=0;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 1|1:2:0,2:0:0:2:66:-6.26402,-0.60206,0 .:.:.:.:.:.:.:. .:.:.:.:.:.:.:. dDocent_Contig_8641 8 . C T 1409.82 . AB=0.723077;ABP=31.1058;AC=3;AF=0.5;AN=6;AO=47;CIGAR=1X3M1X;DP=65;DPB=65;DPRA=0;EPP=105.07;EPPR=42.0968;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=1834;QR=712;RO=18;RPL=0;RPP=105.07;RPPR=42.0968;RPR=47;RUN=1;SAF=47;SAP=105.07;SAR=0;SRF=18;SRP=42.0968;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|1:33:8,25:8:318:25:977:-78.3047,0,-19.0536 0|1:8:2,6:2:80:6:230:-18.6578,0,-5.18355 0|1:24:8,16:8:314:16:627:-49.5421,0,-21.4008 dDocent_Contig_8642 22 . C T 221.616 . AB=0.263158;ABP=21.525;AC=2;AF=0.333333;AN=6;AO=10;CIGAR=2X;DP=89;DPB=89;DPRA=0.372549;EPP=24.725;EPPR=174.557;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=0;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=404;QR=3138;RO=79;RPL=0;RPP=24.725;RPPR=174.557;RPR=10;RUN=1;SAF=10;SAP=24.725;SAR=0;SRF=79;SRP=174.557;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|0:51:51,0:51:2025:0:0:0,-15.3525,-182.436 0|1:12:8,4:8:318:4:161:-11.2631,0,-25.3738 0|1:26:20,6:20:795:6:243:-14.4214,0,-64.0418 dDocent_Contig_8643 107 . N G 69.469 . AB=0;ABP=0;AC=4;AF=1;AN=4;AO=3;CIGAR=1X;DP=3;DPB=3;DPRA=0;EPP=9.52472;EPPR=0;GTI=0;LEN=1;MEANALT=1;MQM=41.6667;MQMR=0;NS=2;NUMALT=1;ODDS=0;PAIRED=0.666667;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=71;QR=0;RO=0;RPL=0;RPP=9.52472;RPPR=0;RPR=3;RUN=1;SAF=0;SAP=9.52472;SAR=3;SRF=0;SRP=0;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 1/1:2:0,2:0:0:2:66:-6.26836,-0.60206,0 1/1:1:0,1:0:0:1:5:-0.273717,-0.30103,0 ./.:.:.:.:.:.:.:. dDocent_Contig_8644 26 . A T 1000.81 . AB=0.557377;ABP=4.7546;AC=4;AF=0.666667;AN=6;AO=37;CIGAR=1X;DP=64;DPB=64;DPRA=0;EPP=83.3548;EPPR=61.6401;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=1344;QR=991;RO=27;RPL=0;RPP=83.3548;RPPR=61.6401;RPR=37;RUN=1;SAF=37;SAP=83.3548;SAR=0;SRF=27;SRP=61.6401;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:37:15,22:15:547:22:806:-61.7241,0,-38.4291 1/1:3:0,3:0:0:3:105:-9.795,-0.90309,0 0/1:24:12,12:12:444:12:433:-32.0844,0,-33.0787 dDocent_Contig_8645 34 . A T 31.6388 . AB=0.142857;ABP=34.0313;AC=2;AF=0.333333;AN=6;AO=8;CIGAR=1X;DP=117;DPB=117;DPRA=0;EPP=20.3821;EPPR=239.701;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=325;QR=4359;RO=109;RPL=0;RPP=20.3821;RPPR=239.701;RPR=8;RUN=1;SAF=8;SAP=20.3821;SAR=0;SRF=109;SRP=239.701;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:89:85,4:85:3397:4:164:0,-11.6418,-290.629 0/1:7:6,1:6:238:1:41:-1.98736,0,-19.6866 0/1:21:18,3:18:724:3:120:-4.86568,0,-59.1632 dDocent_Contig_8646 18 . T C 11040.5 . AB=0.0455581;ABP=790.483;AC=0;AF=0;AN=6;AO=20;CIGAR=1X3M1X3M;DP=439;DPB=442;DPRA=0;EPP=46.4397;EPPR=39.9253;GTI=0;LEN=1;MEANALT=6.66667;MQM=60;MQMR=60;NS=3;NUMALT=5;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=800;QR=676;RO=17;RPL=0;RPP=46.4397;RPPR=39.9253;RPR=20;RUN=1;SAF=20;SAP=46.4397;SAR=0;SRF=17;SRP=39.9253;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|0:171:6,7,33,11,5,103:6:239:7,33,11,5,103:282,1315,427,202,4129:-426.965,-405.527,-423.101,-320.485,-316.922,-330.232,-393.69,-390.127,-305.085,-410.059,-412.118,-408.555,-323.513,-396.717,-430.293,-88.6061,-85.0427,0,-73.2064,-91.6331,-77.2808 0|0:140:5,9,35,1,7,79:5:198:9,35,1,7,79:359,1370,41,277,3176:-356.564,-328.503,-342.09,-245.429,-232.16,-251.189,-354.685,-341.415,-258.341,-370.68,-335.272,-322.003,-238.929,-348.184,-349.461,-96.3427,-83.0727,0,-109.255,-89.8423,-88.8579 0|0:128:6,6,25,0,8,81:6:239:6,25,0,8,81:240,981,0,321,3240:-326.04,-308.076,-325.951,-247.177,-247.088,-259.332,-327.846,-327.757,-266.858,-347.527,-301.397,-301.308,-240.409,-321.078,-318.67,-60.9846,-60.8954,0,-80.6662,-54.2163,-56.2828 dDocent_Contig_8647 21 . C T 1355.33 . AB=0.661538;ABP=17.7429;AC=4;AF=0.666667;AN=6;AO=43;CIGAR=1X3M;DP=65;DPB=65;DPRA=0;EPP=96.3836;EPPR=39.9253;GTI=0;LEN=1;MEANALT=1.66667;MQM=60;MQMR=60;NS=3;NUMALT=2;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=1728;QR=678;RO=17;RPL=0;RPP=96.3836;RPPR=39.9253;RPR=43;RUN=1;SAF=43;SAP=96.3836;SAR=0;SRF=17;SRP=39.9253;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|1:22:6,0,16:6:240:0,16:0,643:-51.5811,-53.3873,-73.1569,0,-20.1696,-15.3532 0|1:36:10,3,23:10:397:3,23:122,921:-72.8551,-65.8014,-97.578,0,-22.6079,-25.7496 1|1:7:1,2,4:1:41:2,4:82,164:-16.6194,-10.1522,-12.9343,-3.38408,0,-5.56404 dDocent_Contig_8648 146 . T C 30.1331 . AB=0.25;ABP=7.35324;AC=1;AF=0.25;AN=4;AO=2;CIGAR=1X;DP=32;DPB=32;DPRA=0.333333;EPP=7.35324;EPPR=68.1545;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=2;NUMALT=1;ODDS=0;PAIRED=0;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=75;QR=1123;RO=30;RPL=0;RPP=7.35324;RPPR=68.1545;RPR=2;RUN=1;SAF=0;SAP=7.35324;SAR=2;SRF=0;SRP=68.1545;SRR=30;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:8:6,2:6:229:2:75:-4.71186,0,-18.5671 ./.:.:.:.:.:.:.:. 0/0:24:24,0:24:894:0:0:0,-7.22472,-80.7727 dDocent_Contig_8649 119 . T C 364.264 . AB=0.25;ABP=26.8965;AC=4;AF=0.666667;AN=6;AO=17;CIGAR=1X;DP=50;DPB=50;DPRA=0;EPP=39.9253;EPPR=74.6689;GTI=0;LEN=1;MEANALT=1;MQM=51.7647;MQMR=59.697;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=581;QR=1115;RO=33;RPL=0;RPP=39.9253;RPPR=74.6689;RPR=17;RUN=1;SAF=0;SAP=39.9253;SAR=17;SRF=0;SRP=74.6689;SRR=33;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:33:26,7:26:871:7:241:-12.0518,0,-68.7598 0/1:11:7,4:7:244:4:134:-9.05518,0,-18.9837 1/1:6:0,6:0:0:6:206:-18.8423,-1.80618,0 dDocent_Contig_8650 10 . A C 230.768 . AB=0.25;ABP=22.5536;AC=4;AF=0.666667;AN=6;AO=10;CIGAR=1X;DP=37;DPB=37;DPRA=0;EPP=24.725;EPPR=61.6401;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=403;QR=1073;RO=27;RPL=0;RPP=24.725;RPPR=61.6401;RPR=10;RUN=1;SAF=10;SAP=24.725;SAR=0;SRF=27;SRP=61.6401;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:19:14,5:14:559:5:205:-13.1154,0,-44.9311 1/1:1:0,1:0:0:1:41:-4.09457,-0.30103,0 0/1:17:13,4:13:514:4:157:-9.38891,0,-41.4888 dDocent_Contig_8651 8 . C T 377.83 . AB=0.347826;ABP=12.2627;AC=3;AF=0.5;AN=6;AO=16;CIGAR=1X;DP=46;DPB=46;DPRA=0;EPP=37.7539;EPPR=68.1545;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=59.7667;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=0.966667;PAO=0;PQA=0;PQR=0;PRO=0;QA=622;QR=1148;RO=30;RPL=0;RPP=37.7539;RPPR=68.1545;RPR=16;RUN=1;SAF=16;SAP=37.7539;SAR=0;SRF=30;SRP=68.1545;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:21:13,8:13:493:8:310:-21.9419,0,-38.3896 0/1:5:4,1:4:153:1:39:-2.39141,0,-12.6365 0/1:20:13,7:13:502:7:273:-18.9174,0,-39.5075 dDocent_Contig_8652 113 . A C 163.494 . AB=0.238095;ABP=15.5221;AC=4;AF=0.666667;AN=6;AO=8;CIGAR=1X;DP=24;DPB=24;DPRA=0;EPP=20.3821;EPPR=35.5824;GTI=0;LEN=1;MEANALT=1.33333;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=270;QR=533;RO=15;RPL=0;RPP=20.3821;RPPR=35.5824;RPR=8;RUN=1;SAF=0;SAP=20.3821;SAR=8;SRF=0;SRP=35.5824;SRR=15;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:13:8,4:8:283:4:140:-8.99068,0,-21.8587 1/1:3:0,3:0:0:3:95:-8.86398,-0.90309,0 0/1:8:7,1:7:250:1:35:-1.09039,0,-20.4385 dDocent_Contig_8654 10 . A G 1392.83 . AB=0.0581395;ABP=148.852;AC=1;AF=0.166667;AN=6;AO=5;CIGAR=2X1M1X1M1X2M1X;DP=86;DPB=86;DPRA=0;EPP=13.8677;EPPR=42.0968;GTI=0;LEN=1;MEANALT=3.33333;MQM=60;MQMR=60;NS=3;NUMALT=4;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=184;QR=703;RO=18;RPL=0;RPP=13.8677;RPPR=42.0968;RPR=5;RUN=1;SAF=5;SAP=13.8677;SAR=0;SRF=18;SRP=42.0968;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|0:69:13,2,2,17,35:13:507:2,2,17,35:80,80,681,1401:-125.932,-123.256,-164.326,-123.256,-158.338,-164.326,-73.7431,-108.824,-108.824,-110.297,-14.4368,-49.5163,-49.5165,0,-45.5707 1|0:2:0,1,0,1,0:0:0:1,0,1,0:41,0,40,0:-7.08367,-3.69465,-3.39362,-7.08367,-3.69465,-7.08367,-3.79354,0,-3.79354,-3.49251,-7.08367,-3.69465,-7.08367,-3.79354,-7.08367 0|0:15:5,2,3,4,1:5:196:2,3,4,1:63,116,161,40:-11.7791,-8.2365,-23.751,-3.75328,-14.8273,-18.9745,0,-11.0802,-6.59875,-14.9263,-9.98697,-21.0575,-16.581,-12.833,-25.8092 dDocent_Contig_8655 13 . T G 99.4661 . AB=0.277778;ABP=10.7311;AC=1;AF=0.166667;AN=6;AO=14;CIGAR=1X2M1I6M;DP=192;DPB=193.889;DPRA=0;EPP=33.4109;EPPR=380.846;GTI=0;LEN=1;MEANALT=1.66667;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=551;QR=6867;RO=174;RPL=0;RPP=33.4109;RPPR=380.846;RPR=14;RUN=1;SAF=14;SAP=33.4109;SAR=0;SRF=174;SRP=380.846;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|0:155:143,8:143:5632:8:324:0,-16.3273,-477.228 0|1:18:13,5:13:517:5:187:-11.7705,0,-41.4589 0|0:19:18,1:18:718:1:40:0,-1.72389,-60.9529 dDocent_Contig_8656 23 . A C 148.811 . AB=0.304348;ABP=10.6577;AC=2;AF=0.333333;AN=6;AO=8;CIGAR=1X;DP=55;DPB=55;DPRA=0;EPP=20.3821;EPPR=105.07;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=312;QR=1880;RO=47;RPL=0;RPP=20.3821;RPPR=105.07;RPR=8;RUN=1;SAF=8;SAP=20.3821;SAR=0;SRF=47;SRP=105.07;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:32:31,1:31:1237:1:39:0,-5.7364,-107.702 0/1:4:2,2:2:82:2:78:-6.19935,0,-6.57556 0/1:19:14,5:14:561:5:195:-12.2046,0,-45.1132 dDocent_Contig_8657 12 . A C 132.351 . AB=0.075;ABP=65.7659;AC=1;AF=0.166667;AN=6;AO=3;CIGAR=4M1X2M1X9M;DP=75;DPB=74.8235;DPRA=0;EPP=9.52472;EPPR=107.241;GTI=0;LEN=1;MEANALT=6;MQM=60;MQMR=59.8125;NS=3;NUMALT=7;ODDS=0;PAIRED=0;PAIREDR=0.9375;PAO=0;PQA=0;PQR=0;PRO=0;QA=121;QR=1901;RO=48;RPL=0;RPP=9.52472;RPPR=107.241;RPR=3;RUN=1;SAF=3;SAP=9.52472;SAR=0;SRF=48;SRP=107.241;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|1:40:28,3,0,0,2,2,3,1:28:1107:3,0,0,2,2,3,1:121,0,0,80,80,107,41:-1.55094,0,-90.2088,-9.97978,-91.1119,-101.087,-9.97978,-91.1119,-101.087,-101.087,-3.38695,-84.5213,-94.4964,-94.4964,-93.8944,-3.38695,-84.5213,-94.4964,-94.4964,-87.9058,-93.8944,-1.27276,-82.398,-92.3729,-92.3729,-85.7825,-85.7825,-91.4698,-6.59359,-87.7273,-97.7025,-97.7025,-91.1119,-91.1119,-88.9884,-97.4014 0|0:11:2,0,2,3,0,0,0,3:2:80:0,2,3,0,0,0,3:0,82,117,0,0,0,120:-12.3061,-12.9081,-19.4986,-6.18743,-12.7785,-12.1765,-3.29461,-9.88418,-3.16421,-8.98109,-12.9081,-19.4986,-12.7785,-9.88418,-19.4986,-12.9081,-19.4986,-12.7785,-9.88418,-19.4986,-19.4986,-12.9081,-19.4986,-12.7785,-9.88418,-19.4986,-19.4986,-19.4986,-3.02204,-9.61285,-2.89164,0,-9.61285,-9.61285,-9.61285,-8.70976 0|0:24:18,0,0,0,0,2,0,3:18:714:0,0,0,0,2,0,3:0,0,0,0,82,0,121:-4.39972,-9.81826,-68.5782,-9.81826,-68.5782,-68.5782,-9.81826,-68.5782,-68.5782,-68.5782,-9.81826,-68.5782,-68.5782,-68.5782,-68.5782,-3.04707,-61.809,-61.809,-61.809,-61.809,-61.207,-9.81826,-68.5782,-68.5782,-68.5782,-68.5782,-61.809,-68.5782,0,-58.754,-58.754,-58.754,-58.754,-51.9846,-58.754,-57.8509 dDocent_Contig_8658 107 . N A 796.118 . AB=0;ABP=0;AC=6;AF=1;AN=6;AO=25;CIGAR=1X;DP=25;DPB=25;DPRA=0;EPP=57.2971;EPPR=0;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=0;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=868;QR=0;RO=0;RPL=0;RPP=57.2971;RPPR=0;RPR=25;RUN=1;SAF=0;SAP=57.2971;SAR=25;SRF=0;SRP=0;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 1/1:21:0,21:0:0:21:728:-65.8392,-6.32163,0 1/1:2:0,2:0:0:2:70:-6.6474,-0.60206,0 1/1:2:0,2:0:0:2:70:-6.6474,-0.60206,0 dDocent_Contig_8659 13 . T C 296.807 . AB=0.0614035;ABP=193.49;AC=0;AF=0;AN=6;AO=7;CIGAR=2M1D4M1X3M1X11M;DP=121;DPB=121.87;DPRA=0;EPP=18.2106;EPPR=178.9;GTI=0;LEN=1;MEANALT=6.5;MQM=60;MQMR=60;NS=3;NUMALT=4;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=264;QR=3164;RO=81;RPL=0;RPP=18.2106;RPPR=178.9;RPR=7;RUN=1;SAF=7;SAP=18.2106;SAR=0;SRF=81;SRP=178.9;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|0:85:56,5,5,0,14:56:2193:5,5,0,14:192,193,0,492:-23.1721,-24.263,-203.107,-24.1732,-188.761,-203.017,-40.0298,-204.612,-204.523,-220.374,0,-164.583,-164.493,-180.344,-176.129 0|0:7:4,0,0,0,3:4:158:0,0,0,3:0,0,0,116:-8.71049,-9.91461,-22.9213,-9.91461,-22.9213,-22.9213,-9.91461,-22.9213,-22.9213,-22.9213,0,-13.3965,-13.3965,-13.3965,-12.4934 0|0:29:21,1,2,3,1:21:813:1,2,3,1:38,71,117,39:-3.31395,-6.51621,-73.0194,-3.85252,-67.5376,-70.052,0,-63.7016,-61.0354,-65.915,-6.42543,-70.1142,-67.4479,-63.6118,-72.9297 dDocent_Contig_8660 140 . T A 1311.97 . AB=0.0535714;ABP=99.951;AC=0;AF=0;AN=6;AO=3;CIGAR=2X;DP=79;DPB=79;DPRA=0;EPP=9.52472;EPPR=72.4974;GTI=0;LEN=1;MEANALT=2;MQM=60;MQMR=60;NS=3;NUMALT=2;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=121;QR=1226;RO=32;RPL=0;RPP=9.52472;RPPR=72.4974;RPR=3;RUN=1;SAF=0;SAP=9.52472;SAR=3;SRF=0;SRP=72.4974;SRR=32;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|0:41:16,1,24:16:622:1,24:41,963:-74.5193,-75.9514,-126.754,0,-47.7034,-43.864 0|0:15:3,2,10:3:114:2,10:80,399:-31.9531,-26.2659,-35.0082,0,-2.73866,-6.32647 0|0:23:13,0,10:13:490:0,10:0,409:-30.2469,-34.1603,-74.2821,0,-40.5164,-37.5061 dDocent_Contig_8661 19 . G A 4862.53 . AB=0.737089;ABP=107.006;AC=3;AF=0.5;AN=6;AO=157;CIGAR=1X;DP=213;DPB=213;DPRA=0;EPP=343.931;EPPR=124.613;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=6166;QR=2259;RO=56;RPL=0;RPP=343.931;RPPR=124.613;RPR=157;RUN=1;SAF=157;SAP=343.931;SAR=0;SRF=56;SRP=124.613;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:121:26,95:26:1045:95:3765:-302.446,0,-57.9141 0/1:8:1,7:1:41:7:280:-23.1631,0,-1.68633 0/1:84:29,55:29:1173:55:2121:-165.788,0,-80.5561 dDocent_Contig_8662 106 . N T 249.109 . AB=0;ABP=0;AC=4;AF=1;AN=4;AO=8;CIGAR=2X;DP=8;DPB=8;DPRA=0;EPP=20.3821;EPPR=0;GTI=0;LEN=1;MEANALT=1;MQM=59.875;MQMR=0;NS=2;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=266;QR=0;RO=0;RPL=0;RPP=20.3821;RPPR=0;RPR=8;RUN=1;SAF=0;SAP=20.3821;SAR=8;SRF=0;SRP=0;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 1|1:6:0,6:0:0:6:196:-17.9619,-1.80618,0 1|1:2:0,2:0:0:2:70:-6.6474,-0.60206,0 .:.:.:.:.:.:.:. dDocent_Contig_8664 9 . T C 725.083 . AB=0.4375;ABP=5.18177;AC=3;AF=0.5;AN=6;AO=28;CIGAR=1X;DP=64;DPB=64;DPRA=0;EPP=63.8115;EPPR=81.1833;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=0.714286;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=1069;QR=1390;RO=36;RPL=0;RPP=63.8115;RPPR=81.1833;RPR=28;RUN=1;SAF=28;SAP=63.8115;SAR=0;SRF=36;SRP=81.1833;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:50:25,25:25:971:25:958:-71.482,0,-72.6517 0/1:10:8,2:8:303:2:72:-3.82634,0,-24.6182 0/1:4:3,1:3:116:1:39:-2.69244,0,-9.61358 dDocent_Contig_8665 19 . T C 77.4166 . AB=0.157895;ABP=41.6397;AC=2;AF=0.333333;AN=6;AO=6;CIGAR=1X;DP=115;DPB=115;DPRA=0.246753;EPP=16.0391;EPPR=239.701;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=0.853211;PAO=0;PQA=0;PQR=0;PRO=0;QA=243;QR=4344;RO=109;RPL=0;RPP=16.0391;RPPR=239.701;RPR=6;RUN=1;SAF=6;SAP=16.0391;SAR=0;SRF=109;SRP=239.701;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:77:77,0:77:3074:0:0:0,-23.1793,-276.749 0/1:17:15,2:15:607:2:79:-2.37973,0,-49.8511 0/1:21:17,4:17:663:4:164:-8.82827,0,-53.6795 dDocent_Contig_8666 9 . T C 737.218 . AB=0.278689;ABP=54.9121;AC=3;AF=0.5;AN=6;AO=34;CIGAR=1X;DP=122;DPB=122;DPRA=0;EPP=76.8404;EPPR=194.1;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=1277;QR=3400;RO=88;RPL=0;RPP=76.8404;RPPR=194.1;RPR=34;RUN=1;SAF=34;SAP=76.8404;SAR=0;SRF=88;SRP=194.1;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:81:69,12:69:2661:12:445:-16.0079,0,-215.294 0/1:16:6,10:6:234:10:376:-29.3749,0,-16.6146 0/1:25:13,12:13:505:12:456:-33.8619,0,-38.2734 dDocent_Contig_8667 18 . A G 66.0376 . AB=0.222222;ABP=15.074;AC=2;AF=0.333333;AN=6;AO=4;CIGAR=1X;DP=20;DPB=20;DPRA=4.5;EPP=11.6962;EPPR=37.7539;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=163;QR=645;RO=16;RPL=0;RPP=11.6962;RPPR=37.7539;RPR=4;RUN=1;SAF=4;SAP=11.6962;SAR=0;SRF=16;SRP=37.7539;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:8:7,1:7:282:1:41:-1.68633,0,-23.3444 0/0:2:2,0:2:82:0:0:0,-0.60206,-7.77968 0/1:10:7,3:7:281:3:122:-8.36219,0,-22.6519 dDocent_Contig_8668 9 . T A 178.764 . AB=0.466667;ABP=3.15506;AC=1;AF=0.25;AN=4;AO=8;CIGAR=1X;DP=35;DPB=35;DPRA=0;EPP=20.3821;EPPR=61.6401;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=2;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=0.777778;PAO=0;PQA=0;PQR=0;PRO=0;QA=306;QR=1049;RO=27;RPL=0;RPP=20.3821;RPPR=61.6401;RPR=8;RUN=1;SAF=8;SAP=20.3821;SAR=0;SRF=27;SRP=61.6401;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:20:19,1:19:737:1:39:0,-2.12404,-62.7647 ./.:.:.:.:.:.:.:. 0/1:15:8,7:8:312:7:267:-19.8763,0,-23.9295 dDocent_Contig_8669 62 . C T 122.859 . AB=0.195122;ABP=36.112;AC=2;AF=0.333333;AN=6;AO=8;CIGAR=1X;DP=45;DPB=45;DPRA=5.125;EPP=20.3821;EPPR=83.3548;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=3.46945e-18;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=303;QR=1457;RO=37;RPL=8;RPP=20.3821;RPPR=83.3548;RPR=0;RUN=1;SAF=8;SAP=20.3821;SAR=0;SRF=37;SRP=83.3548;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:23:17,6:17:689:6:225:-13.6875,0,-55.4149 0/0:4:4,0:4:160:0:0:0,-1.20412,-14.7834 0/1:18:16,2:16:608:2:78:-1.98493,0,-49.6372 dDocent_Contig_8670 31 . T C 261.647 . AB=0.150794;ABP=136.47;AC=3;AF=0.5;AN=6;AO=19;CIGAR=1X;DP=126;DPB=126;DPRA=0;EPP=44.2683;EPPR=235.358;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=761;QR=4227;RO=107;RPL=0;RPP=44.2683;RPPR=235.358;RPR=19;RUN=1;SAF=19;SAP=44.2683;SAR=0;SRF=107;SRP=235.358;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:101:87,14:87:3436:14:566:-20.8789,0,-278.917 0/1:11:8,3:8:311:3:123:-8.15346,0,-25.0417 0/1:14:12,2:12:480:2:72:-2.62195,0,-39.3372 dDocent_Contig_8671 79 . G A 737.997 . AB=0.484848;ABP=3.0761;AC=4;AF=0.666667;AN=6;AO=26;CIGAR=1X;DP=43;DPB=43;DPRA=0;EPP=59.4686;EPPR=39.9253;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=958;QR=616;RO=17;RPL=26;RPP=59.4686;RPPR=39.9253;RPR=0;RUN=1;SAF=26;SAP=59.4686;SAR=0;SRF=17;SRP=39.9253;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 1/1:10:0,10:0:0:10:354:-32.1938,-3.0103,0 0/1:19:8,11:8:288:11:426:-32.9751,0,-20.5458 0/1:14:9,5:9:328:5:178:-12.1537,0,-25.6538 dDocent_Contig_8672 31 . A T 53.5781 . AB=0.214286;ABP=12.937;AC=1;AF=0.166667;AN=6;AO=3;CIGAR=1X;DP=30;DPB=30;DPRA=1.75;EPP=9.52472;EPPR=61.6401;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=119;QR=1079;RO=27;RPL=0;RPP=9.52472;RPPR=61.6401;RPR=3;RUN=1;SAF=3;SAP=9.52472;SAR=0;SRF=27;SRP=61.6401;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:14:11,3:11:444:3:119:-6.88059,0,-36.1014 0/0:4:4,0:4:156:0:0:0,-1.20412,-14.4157 0/0:12:12,0:12:479:0:0:0,-3.61236,-43.4604 dDocent_Contig_8673 138 . T C 39.4363 . AB=0.333333;ABP=4.45795;AC=1;AF=0.166667;AN=6;AO=2;CIGAR=1X;DP=24;DPB=24;DPRA=0.666667;EPP=3.0103;EPPR=50.7827;GTI=0;LEN=1;MEANALT=1;MQM=55;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=0;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=80;QR=889;RO=22;RPL=0;RPP=7.35324;RPPR=50.7827;RPR=2;RUN=1;SAF=1;SAP=3.0103;SAR=1;SRF=0;SRP=50.7827;SRR=22;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:10:10,0:10:402:0:0:0,-3.0103,-36.5397 0/0:8:8,0:8:323:0:0:0,-2.40824,-29.4392 0/1:6:4,2:4:164:2:80:-5.76748,0,-13.3437 dDocent_Contig_8674 12 . G C 113.369 . AB=0.666667;ABP=4.45795;AC=1;AF=0.166667;AN=6;AO=4;CIGAR=1X;DP=71;DPB=71;DPRA=0.184615;EPP=11.6962;EPPR=148.499;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=162;QR=2699;RO=67;RPL=0;RPP=11.6962;RPPR=148.499;RPR=4;RUN=1;SAF=4;SAP=11.6962;SAR=0;SRF=67;SRP=148.499;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:38:38,0:38:1531:0:0:0,-11.4391,-138.029 0/1:6:2,4:2:77:4:162:-13.1608,0,-5.50202 0/0:27:27,0:27:1091:0:0:0,-8.12781,-98.4745 dDocent_Contig_8678 14 . T G 128.547 . AB=0.147541;ABP=68.8308;AC=2;AF=0.333333;AN=6;AO=9;CIGAR=1X;DP=66;DPB=66;DPRA=6.1;EPP=22.5536;EPPR=126.784;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=3.46945e-18;PAIRED=0.888889;PAIREDR=0.982456;PAO=0;PQA=0;PQR=0;PRO=0;QA=359;QR=2303;RO=57;RPL=0;RPP=22.5536;RPPR=126.784;RPR=9;RUN=1;SAF=9;SAP=22.5536;SAR=0;SRF=57;SRP=126.784;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:39:32,7:32:1283:7:286:-14.3746,0,-103.996 0/0:5:5,0:5:204:0:0:0,-1.50515,-18.744 0/1:22:20,2:20:816:2:73:-0.307413,0,-67.131 dDocent_Contig_8679 17 . G A 192.306 . AB=0.466667;ABP=3.15506;AC=1;AF=0.166667;AN=6;AO=7;CIGAR=1X;DP=86;DPB=86;DPRA=0.422535;EPP=18.2106;EPPR=174.557;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=280;QR=3165;RO=79;RPL=0;RPP=18.2106;RPPR=174.557;RPR=7;RUN=1;SAF=7;SAP=18.2106;SAR=0;SRF=79;SRP=174.557;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:51:51,0:51:2056:0:0:0,-15.3525,-185.216 0/1:15:8,7:8:315:7:280:-21.0545,0,-24.1985 0/0:20:20,0:20:794:0:0:0,-6.0206,-71.7767 dDocent_Contig_8680 11 . T C 2727.69 . AB=0.401198;ABP=17.1704;AC=6;AF=1;AN=6;AO=67;CIGAR=4M1X5M;DP=167;DPB=167;DPRA=0;EPP=148.499;EPPR=52.9542;GTI=0;LEN=1;MEANALT=5.33333;MQM=60;MQMR=60;NS=3;NUMALT=5;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=2663;QR=901;RO=23;RPL=0;RPP=148.499;RPPR=52.9542;RPR=67;RUN=1;SAF=67;SAP=148.499;SAR=0;SRF=23;SRP=52.9542;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 1|1:100:13,3,6,8,27,42:13:512:3,6,8,27,42:113,231,313,1060,1678:-179.208,-173.864,-215.083,-164.155,-197.02,-204.471,-157.388,-190.253,-180.544,-197.102,-96.0878,-128.952,-119.244,-112.477,-130.082,-44.913,-77.7784,-68.0698,-61.3024,0,-74.3927 1|1:23:1,1,2,2,7,10:1:40:1,2,2,7,10:39,78,80,283,384:-51.2302,-48.3255,-51.3199,-45.1198,-45.2095,-47.8131,-44.9404,-45.0301,-41.8243,-47.6338,-28.2117,-28.3016,-25.0955,-24.9157,-29.4003,-20.024,-20.114,-16.9091,-16.7289,0,-20.3088 1|1:44:9,7,3,1,9,15:9:349:7,3,1,9,15:263,116,40,362,601:-47.8401,-29.1152,-55.6765,-41.0218,-48.2563,-68.7884,-47.2541,-54.4886,-66.3962,-75.623,-20.8492,-28.0845,-39.9915,-46.2241,-46.8102,-1.03236,-8.26872,-20.1751,-26.4077,0,-25.1877 dDocent_Contig_8681 15 . A G 957.981 . AB=0.574074;ABP=5.5839;AC=1;AF=0.166667;AN=6;AO=32;CIGAR=1X;DP=74;DPB=74;DPRA=36.5;EPP=72.4974;EPPR=94.2121;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=1295;QR=1672;RO=42;RPL=0;RPP=72.4974;RPPR=94.2121;RPR=32;RUN=1;SAF=32;SAP=72.4974;SAR=0;SRF=42;SRP=94.2121;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:54:23,31:23:914:31:1259:-97.3202,0,-66.3082 0/0:1:1,0:1:41:0:0:0,-0.30103,-4.09457 0/0:19:18,1:18:717:1:36:0,-2.12129,-61.2549 dDocent_Contig_8682 89 . G A 33.2726 . AB=0.375;ABP=4.09604;AC=1;AF=0.166667;AN=6;AO=3;CIGAR=1X;DP=47;DPB=47;DPRA=0.410256;EPP=9.52472;EPPR=98.5551;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=8.67362e-19;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=81;QR=1377;RO=44;RPL=3;RPP=9.52472;RPPR=98.5551;RPR=0;RUN=1;SAF=3;SAP=9.52472;SAR=0;SRF=44;SRP=98.5551;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:11:11,0:11:356:0:0:0,-3.31133,-32.3536 0/0:28:28,0:28:852:0:0:0,-8.42884,-76.9644 0/1:8:5,3:5:169:3:81:-5.15097,0,-13.1348 dDocent_Contig_8683 14 . T C 34.4711 . AB=0.103448;ABP=82.2316;AC=1;AF=0.166667;AN=6;AO=6;CIGAR=1X;DP=70;DPB=70;DPRA=9.66667;EPP=16.0391;EPPR=141.985;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=245;QR=2486;RO=64;RPL=0;RPP=16.0391;RPPR=141.985;RPR=6;RUN=1;SAF=6;SAP=16.0391;SAR=0;SRF=64;SRP=141.985;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:58:52,6:52:2043:6:245:-4.96973,0,-166.622 0/0:4:4,0:4:146:0:0:0,-1.20412,-13.4934 0/0:8:8,0:8:297:0:0:0,-2.40824,-27.081 dDocent_Contig_8684 7 . T C 44.6199 . AB=0.24;ABP=17.6895;AC=2;AF=0.333333;AN=6;AO=6;CIGAR=1X;DP=28;DPB=28;DPRA=4.16667;EPP=16.0391;EPPR=50.7827;GTI=0;LEN=1;MEANALT=1;MQM=34.6667;MQMR=58.4091;NS=3;NUMALT=1;ODDS=1.73472e-18;PAIRED=0.333333;PAIREDR=0.954545;PAO=0;PQA=0;PQR=0;PRO=0;QA=234;QR=849;RO=22;RPL=0;RPP=16.0391;RPPR=50.7827;RPR=6;RUN=1;SAF=6;SAP=16.0391;SAR=0;SRF=22;SRP=50.7827;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:15:12,3:12:461:3:117:-1.71155,0,-36.3804 0/0:3:3,0:3:116:0:0:0,-0.90309,-10.8177 0/1:10:7,3:7:272:3:117:-6.21696,0,-21.8369 dDocent_Contig_8686 7 . T C 4501.07 . AB=0.111367;ABP=1711.08;AC=3;AF=0.5;AN=6;AO=145;CIGAR=1X6M;DP=1302;DPB=1303.57;DPRA=0;EPP=317.874;EPPR=307.016;GTI=0;LEN=1;MEANALT=37;MQM=54.6138;MQMR=60;NS=3;NUMALT=7;ODDS=0;PAIRED=0.793103;PAIREDR=0.957143;PAO=0.5;PQA=19.5;PQR=19.5;PRO=0.5;QA=5145;QR=5443;RO=140;RPL=0;RPP=317.874;RPPR=307.016;RPR=145;RUN=1;SAF=145;SAP=317.874;SAR=0;SRF=140;SRP=307.016;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|1:595:93,23,7,56,45,47,42,88:93:3627:23,7,56,45,47,42,88:888,246,2201,1761,1502,1600,3097:-221.231,-197.13,-488.352,-230.067,-476.116,-526.105,-120.722,-366.772,-399.708,-402.01,-155.664,-401.713,-434.649,-325.306,-440.262,-133.121,-379.171,-412.107,-302.763,-337.704,-417.118,-118.522,-364.573,-397.509,-288.165,-323.106,-300.564,-404.025,0,-246.053,-278.989,-169.645,-204.587,-182.044,-167.445,-271.658 1|0:228:8,18,21,15,14,28,28,15:8:307:18,21,15,14,28,28,15:691,712,585,545,878,1069,568:-127.221,-102.706,-122.489,-73.8787,-72.1581,-92.7591,-97.0783,-95.3576,-66.5296,-117.765,-95.4424,-93.7215,-64.8935,-88.0932,-116.43,-62.2453,-60.5254,-31.6964,-54.8965,-53.2603,-79.0186,-42.1831,-40.4626,-11.6334,-34.8339,-33.1978,0,-58.9569,-83.3472,-81.6261,-52.7979,-75.9978,-74.3618,-41.1646,-21.102,-104.034 0|1:479:39,28,26,55,54,48,34,42:39:1509:28,26,55,54,48,34,42:1103,919,2153,2100,1441,1314,1480:-107.143,-74.019,-189.545,-46.9171,-126.009,-163.046,-0.594349,-79.6874,-52.5851,-107.994,-5.64172,-84.7347,-57.6324,-11.3108,-113.342,-8.04664,-87.1395,-60.0374,-13.7154,-18.7628,-117.553,-10.9484,-90.0409,-62.9391,-16.6164,-21.6638,-24.0687,-124.67,0,-79.0928,-51.9908,-5.66834,-10.7157,-13.1206,-16.0221,-111.313 dDocent_Contig_8687 133 . T C 585.539 . AB=0.428571;ABP=5.80219;AC=3;AF=0.5;AN=6;AO=27;CIGAR=1X;DP=63;DPB=63;DPRA=0;EPP=61.6401;EPPR=81.1833;GTI=0;LEN=1;MEANALT=1;MQM=42.2222;MQMR=57.4444;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=946;QR=1319;RO=36;RPL=0;RPP=61.6401;RPPR=81.1833;RPR=27;RUN=1;SAF=0;SAP=61.6401;SAR=27;SRF=0;SRP=81.1833;SRR=36;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:32:15,17:15:546:17:623:-44.8895,0,-39.0746 0/1:8:6,2:6:224:2:63:-3.39311,0,-18.1115 0/1:23:15,8:15:549:8:260:-15.7884,0,-42.817 dDocent_Contig_8688 19 . T C 37.5469 . AB=0.285714;ABP=5.80219;AC=1;AF=0.166667;AN=6;AO=2;CIGAR=1X;DP=30;DPB=30;DPRA=0.608696;EPP=7.35324;EPPR=63.8115;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=81;QR=1077;RO=28;RPL=0;RPP=7.35324;RPPR=63.8115;RPR=2;RUN=1;SAF=2;SAP=7.35324;SAR=0;SRF=28;SRP=63.8115;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:10:10,0:10:392:0:0:0,-3.0103,-35.6385 0/1:7:5,2:5:181:2:81:-5.57852,0,-14.5332 0/0:13:13,0:13:504:0:0:0,-3.91339,-45.7058 dDocent_Contig_8690 152 . C T 37.0043 . AB=0.190476;ABP=20.4855;AC=1;AF=0.25;AN=4;AO=4;CIGAR=1X;DP=33;DPB=33;DPRA=1.75;EPP=11.6962;EPPR=65.983;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=2;NUMALT=1;ODDS=0;PAIRED=0;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=130;QR=996;RO=29;RPL=0;RPP=11.6962;RPPR=65.983;RPR=4;RUN=1;SAF=0;SAP=11.6962;SAR=4;SRF=0;SRP=65.983;SRR=29;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:12:12,0:12:429:0:0:0,-3.61236,-38.9455 0/1:21:17,4:17:567:4:130:-5.70035,0,-45.0182 ./.:.:.:.:.:.:.:. dDocent_Contig_8691 145 . G A 34.5394 . AB=0.25;ABP=7.35324;AC=1;AF=0.166667;AN=6;AO=2;CIGAR=1X;DP=17;DPB=17;DPRA=1.77778;EPP=7.35324;EPPR=35.5824;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=81;QR=608;RO=15;RPL=0;RPP=7.35324;RPPR=35.5824;RPR=2;RUN=1;SAF=0;SAP=7.35324;SAR=2;SRF=0;SRP=35.5824;SRR=15;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:6:6,0:6:245:0:0:0,-1.80618,-22.4295 0/0:3:3,0:3:122:0:0:0,-0.90309,-11.3725 0/1:8:6,2:6:241:2:81:-5.27749,0,-19.6581 dDocent_Contig_8693 18 . T C 103.157 . AB=0.4;ABP=3.87889;AC=1;AF=0.166667;AN=6;AO=4;CIGAR=1X;DP=28;DPB=28;DPRA=1.11111;EPP=11.6962;EPPR=55.1256;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=164;QR=964;RO=24;RPL=0;RPP=11.6962;RPPR=55.1256;RPR=4;RUN=1;SAF=4;SAP=11.6962;SAR=0;SRF=24;SRP=55.1256;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:13:13,0:13:522:0:0:0,-3.91339,-47.3262 0/0:5:5,0:5:205:0:0:0,-1.50515,-18.835 0/1:10:6,4:6:237:4:164:-12.1396,0,-18.6892 dDocent_Contig_8695 30 . C T 274.209 . AB=0.168675;ABP=82.1513;AC=4;AF=0.666667;AN=6;AO=15;CIGAR=1X;DP=84;DPB=84;DPRA=0;EPP=35.5824;EPPR=152.842;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=609;QR=2791;RO=69;RPL=0;RPP=35.5824;RPPR=152.842;RPR=15;RUN=1;SAF=15;SAP=35.5824;SAR=0;SRF=69;SRP=152.842;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:68:57,11:57:2321:11:449:-20.2958,0,-188.563 1/1:1:0,1:0:0:1:37:-3.69783,-0.30103,0 0/1:15:12,3:12:470:3:123:-6.94934,0,-38.1293 dDocent_Contig_8696 7 . T A 158.992 . AB=0.169231;ABP=64.7803;AC=2;AF=0.333333;AN=6;AO=12;CIGAR=1X;DP=80;DPB=80;DPRA=0;EPP=29.068;EPPR=150.67;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=57.4706;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=464;QR=2602;RO=68;RPL=0;RPP=29.068;RPPR=150.67;RPR=12;RUN=1;SAF=12;SAP=29.068;SAR=0;SRF=68;SRP=150.67;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:48:40,8:40:1528:8:310:-13.8143,0,-122.343 0/0:15:14,1:14:531:1:39:0,-0.618885,-44.2264 0/1:17:14,3:14:543:3:115:-5.60738,0,-44.0565 dDocent_Contig_8697 15 . C T 3015.93 . AB=0.0448718;ABP=283.687;AC=0;AF=0;AN=6;AO=7;CIGAR=2X;DP=156;DPB=156;DPRA=0;EPP=18.2106;EPPR=111.584;GTI=0;LEN=1;MEANALT=2;MQM=60;MQMR=60;NS=3;NUMALT=2;ODDS=0;PAIRED=0.714286;PAIREDR=0.98;PAO=0;PQA=0;PQR=0;PRO=0;QA=282;QR=1958;RO=50;RPL=0;RPP=18.2106;RPPR=111.584;RPR=7;RUN=1;SAF=7;SAP=18.2106;SAR=0;SRF=50;SRP=111.584;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|0:46:15,3,28:15:599:3,28:122,1120:-87.6177,-82.0692,-130.502,0,-39.2657,-40.9013 0|0:37:12,2,23:12:467:2,23:79,882:-68.7575,-65.868,-103.644,0,-31.8695,-31.4476 0|0:73:23,2,48:23:892:2,48:81,1915:-150.741,-150.985,-223.659,0,-66.5827,-58.8138 dDocent_Contig_8699 39 . A G 779.597 . AB=0.491228;ABP=3.0484;AC=3;AF=0.5;AN=6;AO=28;CIGAR=1X;DP=57;DPB=57;DPRA=0;EPP=63.8115;EPPR=63.8115;GTI=0;LEN=1;MEANALT=1.33333;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=1104;QR=1115;RO=28;RPL=0;RPP=63.8115;RPPR=63.8115;RPR=28;RUN=1;SAF=28;SAP=63.8115;SAR=0;SRF=28;SRP=63.8115;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:30:11,18:11:448:18:707:-55.1271,0,-31.8389 0/1:7:3,4:3:116:4:160:-12.6757,0,-8.70907 0/1:20:14,6:14:551:6:237:-15.6797,0,-43.9085 dDocent_Contig_8702 70 . T C 771.9 . AB=0.478261;ABP=3.10471;AC=4;AF=0.666667;AN=6;AO=25;CIGAR=1X;DP=37;DPB=37;DPRA=0;EPP=57.2971;EPPR=29.068;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=1.73472e-18;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=962;QR=473;RO=12;RPL=25;RPP=57.2971;RPPR=29.068;RPR=0;RUN=1;SAF=25;SAP=57.2971;SAR=0;SRF=12;SRP=29.068;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 1/1:14:0,14:0:0:14:550:-49.8404,-4.21442,0 0/1:13:6,7:6:243:7:257:-19.5594,0,-18.3348 0/1:10:6,4:6:230:4:155:-11.3132,0,-18.0538 dDocent_Contig_8703 22 . A T 78.6223 . AB=0;ABP=0;AC=2;AF=0.333333;AN=6;AO=2;CIGAR=1X;DP=17;DPB=17;DPRA=0.266667;EPP=7.35324;EPPR=35.5824;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=81;QR=596;RO=15;RPL=0;RPP=7.35324;RPPR=35.5824;RPR=2;RUN=1;SAF=2;SAP=7.35324;SAR=0;SRF=15;SRP=35.5824;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:5:5,0:5:196:0:0:0,-1.50515,-18.0143 1/1:2:0,2:0:0:2:81:-7.68573,-0.60206,0 0/0:10:10,0:10:400:0:0:0,-3.0103,-36.3584 dDocent_Contig_8704 12 . C T 156.236 . AB=0.242424;ABP=22.0271;AC=1;AF=0.166667;AN=6;AO=8;CIGAR=1X;DP=51;DPB=51;DPRA=3.66667;EPP=20.3821;EPPR=96.3836;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=297;QR=1733;RO=43;RPL=0;RPP=20.3821;RPPR=96.3836;RPR=8;RUN=1;SAF=8;SAP=20.3821;SAR=0;SRF=43;SRP=96.3836;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:33:25,8:25:1011:8:297:-17.1461,0,-81.3483 0/0:2:2,0:2:82:0:0:0,-0.60206,-7.77968 0/0:16:16,0:16:640:0:0:0,-4.81648,-57.9326 dDocent_Contig_8707 7 . T C 366.602 . AB=0.233766;ABP=50.4161;AC=2;AF=0.333333;AN=6;AO=21;CIGAR=1X;DP=160;DPB=160;DPRA=0;EPP=48.6112;EPPR=302.673;GTI=0;LEN=1;MEANALT=1.33333;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=807;QR=5242;RO=138;RPL=0;RPP=48.6112;RPPR=302.673;RPR=21;RUN=1;SAF=21;SAP=48.6112;SAR=0;SRF=138;SRP=302.673;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:83:79,3:79:2998:3:111:0,-14.7164,-259.625 0/1:25:21,4:21:776:4:156:-6.89154,0,-62.6329 0/1:52:38,14:38:1468:14:540:-33.2915,0,-116.743 dDocent_Contig_8708 21 . C T 522.596 . AB=0.411765;ABP=5.30951;AC=4;AF=0.666667;AN=6;AO=18;CIGAR=1X;DP=38;DPB=38;DPRA=0;EPP=42.0968;EPPR=46.4397;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=0.888889;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=721;QR=801;RO=20;RPL=0;RPP=42.0968;RPPR=46.4397;RPR=18;RUN=1;SAF=18;SAP=42.0968;SAR=0;SRF=20;SRP=46.4397;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:21:9,12:9:361:12:480:-37.2294,0,-26.5299 0/1:13:11,2:11:440:2:78:-3.48991,0,-36.0408 1/1:4:0,4:0:0:4:163:-15.0584,-1.20412,0 dDocent_Contig_8710 13 . T A 442.889 . AB=0.369565;ABP=9.80795;AC=2;AF=0.333333;AN=6;AO=17;CIGAR=1X2M6D1M;DP=47;DPB=36.8;DPRA=23;EPP=39.9253;EPPR=61.6401;GTI=0;LEN=1;MEANALT=2.5;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=6.93889e-18;PAIRED=0.176471;PAIREDR=0.888889;PAO=0;PQA=0;PQR=0;PRO=0;QA=676;QR=1036;RO=27;RPL=0;RPP=39.9253;RPPR=61.6401;RPR=17;RUN=1;SAF=17;SAP=39.9253;SAR=0;SRF=27;SRP=61.6401;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|1:26:13,11:13:491:11:436:-31.9627,0,-36.9014 0|0:1:1,0:1:40:0:0:0,-0.30103,-3.99568 0|1:20:13,6:13:505:6:240:-15.8484,0,-39.6643 dDocent_Contig_8711 10 . T C 142.839 . AB=0.285714;ABP=11.386;AC=1;AF=0.166667;AN=6;AO=6;CIGAR=1X;DP=42;DPB=42;DPRA=2;EPP=16.0391;EPPR=81.1833;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=245;QR=1462;RO=36;RPL=0;RPP=16.0391;RPPR=81.1833;RPR=6;RUN=1;SAF=6;SAP=16.0391;SAR=0;SRF=36;SRP=81.1833;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:14:14,0:14:563:0:0:0,-4.21442,-51.0125 0/0:7:7,0:7:285:0:0:0,-2.10721,-26.0244 0/1:21:15,6:15:614:6:245:-16.1078,0,-49.2748 dDocent_Contig_8712 21 . C T 139.762 . AB=0.113208;ABP=71.8828;AC=1;AF=0.166667;AN=6;AO=6;CIGAR=12M1X1M;DP=59;DPB=51.2857;DPRA=0;EPP=16.0391;EPPR=98.5551;GTI=0;LEN=1;MEANALT=2;MQM=60;MQMR=60;NS=3;NUMALT=2;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=231;QR=1713;RO=44;RPL=0;RPP=16.0391;RPPR=98.5551;RPR=6;RUN=1;SAF=6;SAP=16.0391;SAR=0;SRF=44;SRP=98.5551;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|1:28:20,3,5:20:781:3,5:111,191:-9.65609,-6.60009,-69.9064,0,-55.1419,-62.7152 0|0:6:5,1,0:5:191:1,0:37,0:-1.89165,0,-15.751,-3.3968,-16.0521,-19.0771 0|0:25:19,5,1:19:741:5,1:167,40:-7.74265,0,-59.3934,-10.1562,-57.603,-70.8073 dDocent_Contig_8713 134 . C T 189.916 . AB=0.658537;ABP=11.961;AC=3;AF=0.5;AN=6;AO=27;CIGAR=1X;DP=41;DPB=41;DPRA=0;EPP=61.6401;EPPR=33.4109;GTI=0;LEN=1;MEANALT=1;MQM=15.037;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=0;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=912;QR=481;RO=14;RPL=0;RPP=61.6401;RPPR=33.4109;RPR=27;RUN=1;SAF=0;SAP=61.6401;SAR=27;SRF=0;SRP=33.4109;SRR=14;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:26:8,18:8:274:18:610:-15.9369,0,-17.1667 0/1:4:1,3:1:34:3:103:-4.04628,0,-2.19479 0/1:11:5,6:5:173:6:199:-4.44607,0,-12.5989 dDocent_Contig_8714 16 . G A 1130.28 . AB=0.644068;ABP=13.6468;AC=3;AF=0.5;AN=6;AO=38;CIGAR=1X;DP=59;DPB=59;DPRA=0;EPP=85.5263;EPPR=48.6112;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=0.947368;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=1503;QR=845;RO=21;RPL=0;RPP=85.5263;RPPR=48.6112;RPR=38;RUN=1;SAF=38;SAP=85.5263;SAR=0;SRF=21;SRP=48.6112;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:37:11,26:11:437:26:1027:-81.5907,0,-28.5415 0/1:12:7,5:7:286:5:193:-14.1273,0,-22.5025 0/1:10:3,7:3:122:7:283:-22.8329,0,-8.36219 dDocent_Contig_8715 9 . T G 2212.27 . AB=0.0727273;ABP=90.2245;AC=0;AF=0;AN=6;AO=4;CIGAR=2M1I2M1X;DP=128;DPB=145;DPRA=0;EPP=11.6962;EPPR=96.3836;GTI=0;LEN=1;MEANALT=2;MQM=58.25;MQMR=60;NS=3;NUMALT=2;ODDS=0;PAIRED=0.75;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=155;QR=1638;RO=43;RPL=0;RPP=11.6962;RPPR=96.3836;RPR=4;RUN=1;SAF=4;SAP=11.6962;SAR=0;SRF=43;SRP=96.3836;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|0:55:18,0,37:18:683:0,37:0,1391:-107.545,-112.963,-168.971,0,-56.3844,-45.2463 0|0:18:5,0,13:5:194:0,13:0,442:-33.2649,-34.7701,-50.7267,0,-16.3277,-12.4143 0|0:55:20,4,31:20:761:4,31:155,1150:-85.9408,-79.2367,-140.458,0,-49.6902,-53.0813 dDocent_Contig_8716 13 . C T 345.795 . AB=0.304348;ABP=18.305;AC=2;AF=0.333333;AN=6;AO=15;CIGAR=1X;DP=60;DPB=60;DPRA=0;EPP=35.5824;EPPR=100.727;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=3.46945e-18;PAIRED=1;PAIREDR=0.955556;PAO=0;PQA=0;PQR=0;PRO=0;QA=610;QR=1815;RO=45;RPL=0;RPP=35.5824;RPPR=100.727;RPR=15;RUN=1;SAF=15;SAP=35.5824;SAR=0;SRF=45;SRP=100.727;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:37:25,12:25:1015:12:490:-33.313,0,-80.5029 0/1:9:7,2:7:284:2:79:-4.78797,0,-23.2247 0/0:14:13,1:13:516:1:41:0,-0.119853,-42.6924 dDocent_Contig_8717 9 . T A 4318.62 . AB=0.770053;ABP=121.466;AC=3;AF=0.5;AN=6;AO=144;CIGAR=1X;DP=187;DPB=187;DPRA=0;EPP=315.702;EPPR=96.3836;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=5477;QR=1662;RO=43;RPL=0;RPP=315.702;RPPR=96.3836;RPR=144;RUN=1;SAF=144;SAP=315.702;SAR=0;SRF=43;SRP=96.3836;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:98:28,70:28:1085:70:2666:-210.622,0,-68.4533 0/1:23:5,18:5:194:18:695:-55.9601,0,-10.9092 0/1:66:10,56:10:383:56:2116:-170.803,0,-14.9567 dDocent_Contig_8719 22 . C A 114.233 . AB=0.145161;ABP=70.8163;AC=2;AF=0.333333;AN=6;AO=10;CIGAR=3M1X1M;DP=107;DPB=104.6;DPRA=0;EPP=24.725;EPPR=204.957;GTI=0;LEN=1;MEANALT=1.66667;MQM=60;MQMR=60;NS=3;NUMALT=2;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=407;QR=3725;RO=93;RPL=0;RPP=24.725;RPPR=204.957;RPR=10;RUN=1;SAF=10;SAP=24.725;SAR=0;SRF=93;SRP=204.957;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|1:50:44,1,5:44:1777:1,5:41,202:-3.40293,-13.2632,-159.456,0,-143.104,-144.983 0|1:12:8,0,4:8:316:0,4:0,164:-11.5375,-13.9458,-39.9372,0,-26.3959,-25.1918 0|0:45:41,3,1:41:1632:3,1:114,41:0,-3.01641,-136.471,-8.9507,-133.99,-143.035 dDocent_Contig_8720 13 . C A 296.49 . AB=0.104478;ABP=94.0501;AC=3;AF=0.500001;AN=6;AO=7;CIGAR=1X3M;DP=67;DPB=67;DPRA=0;EPP=18.2106;EPPR=96.3836;GTI=0;LEN=1;MEANALT=2.33333;MQM=44.5714;MQMR=51.3256;NS=3;NUMALT=3;ODDS=0;PAIRED=0.571429;PAIREDR=0.767442;PAO=0;PQA=0;PQR=0;PRO=0;QA=251;QR=1675;RO=43;RPL=0;RPP=18.2106;RPPR=96.3836;RPR=7;RUN=1;SAF=7;SAP=18.2106;SAR=0;SRF=43;SRP=96.3836;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|1:31:16,10,2,3:16:615:10,2,3:386,80,99:-26.9498,0,-41.5535,-27.7331,-40.5237,-71.6368,-24.5848,-37.3741,-65.0506,-68.1878 0|1:19:15,0,3,1:15:587:0,3,1:0,116,33:-1.50566,-6.02111,-49.6629,0,-43.6251,-42.722,-3.61239,-47.2668,-41.2305,-46.9658 0|1:17:12,2,0,3:12:473:2,0,3:81,0,119:-6.17785,-3.10774,-37.1268,-9.79021,-37.7288,-44.4129,0,-27.9253,-34.6116,-33.7085 dDocent_Contig_8721 7 . T A 1335.99 . AB=0.409091;ABP=9.32731;AC=4;AF=0.666667;AN=6;AO=51;CIGAR=1X;DP=104;DPB=104;DPRA=0;EPP=113.755;EPPR=115.927;GTI=0;LEN=1;MEANALT=1.33333;MQM=52.1961;MQMR=49.1538;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=1951;QR=2014;RO=52;RPL=0;RPP=113.755;RPPR=115.927;RPR=51;RUN=1;SAF=51;SAP=113.755;SAR=0;SRF=52;SRP=115.927;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:49:29,20:29:1125:20:766:-50.539,0,-82.223 1/1:16:0,15:0:0:15:572:-51.3315,-4.51545,0 0/1:39:23,16:23:889:16:613:-35.2517,0,-54.4393 dDocent_Contig_8722 13 . T A 4025.41 . AB=0.516304;ABP=3.43515;AC=5;AF=0.833333;AN=6;AO=95;CIGAR=1X3M;DP=184;DPB=184;DPRA=0;EPP=209.3;EPPR=63.8115;GTI=0;LEN=1;MEANALT=2.33333;MQM=60;MQMR=60;NS=3;NUMALT=2;ODDS=2.77556e-17;PAIRED=0.989474;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=3796;QR=1096;RO=28;RPL=0;RPP=209.3;RPPR=63.8115;RPR=95;RUN=1;SAF=95;SAP=209.3;SAR=0;SRF=28;SRP=63.8115;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 1|1:123:20,42,60:20:789:42,60:1651,2383:-261.03,-131.257,-183.527,-70.8806,0,-117.733 0|1:16:2,2,12:2:76:2,12:76,488:-39.673,-34.0459,-39.6731,0,-0.000136909,-2.62067 1|1:45:6,16,23:6:231:16,23:629,925:-107.211,-57.2829,-71.4262,-32.7825,0,-44.8199 dDocent_Contig_8723 14 . C T 650.073 . AB=0.05;ABP=73.366;AC=0;AF=0;AN=4;AO=2;CIGAR=1X2M1X;DP=48;DPB=48;DPRA=0;EPP=7.35324;EPPR=52.9542;GTI=0;LEN=1;MEANALT=2;MQM=60;MQMR=60;NS=2;NUMALT=2;ODDS=0;PAIRED=0;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=79;QR=921;RO=23;RPL=0;RPP=7.35324;RPPR=52.9542;RPR=2;RUN=1;SAF=2;SAP=7.35324;SAR=0;SRF=23;SRP=52.9542;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|0:40:17,2,21:17:685:2,21:79,838:-63.8994,-62.5163,-118.377,0,-49.9675,-50.146 0|0:8:6,0,2:6:236:0,2:0,76:-4.80657,-6.61275,-26.036,0,-19.8063,-19.2042 .:.:.:.:.:.:.:. dDocent_Contig_8724 15 . G T 826.387 . AB=0.235669;ABP=98.2923;AC=3;AF=0.5;AN=6;AO=37;CIGAR=1X;DP=157;DPB=157;DPRA=0;EPP=83.3548;EPPR=263.587;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=1493;QR=4813;RO=120;RPL=0;RPP=83.3548;RPPR=263.587;RPR=37;RUN=1;SAF=37;SAP=83.3548;SAR=0;SRF=120;SRP=263.587;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:78:56,22:56:2245:22:882:-56.2091,0,-178.731 0/1:18:15,3:15:602:3:122:-5.95395,0,-49.0983 0/1:61:49,12:49:1966:12:489:-25.9985,0,-158.773 dDocent_Contig_8726 198 . C T 223.265 . AB=0.244898;ABP=30.7077;AC=3;AF=0.5;AN=6;AO=12;CIGAR=1X;DP=49;DPB=49;DPRA=0;EPP=29.068;EPPR=83.3548;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=461;QR=1415;RO=37;RPL=12;RPP=29.068;RPPR=83.3548;RPR=0;RUN=1;SAF=0;SAP=29.068;SAR=12;SRF=0;SRP=83.3548;SRR=37;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:27:21,6:21:807:6:232:-13.1211,0,-64.8266 0/1:5:3,2:3:116:2:74:-5.52028,0,-9.31255 0/1:17:13,4:13:492:4:155:-9.20793,0,-39.5051 dDocent_Contig_8727 16 . A G 166.12 . AB=0.173913;ABP=66.7383;AC=3;AF=0.5;AN=6;AO=12;CIGAR=1X;DP=69;DPB=69;DPRA=0;EPP=29.068;EPPR=126.784;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=464;QR=2220;RO=57;RPL=0;RPP=29.068;RPPR=126.784;RPR=12;RUN=1;SAF=12;SAP=29.068;SAR=0;SRF=57;SRP=126.784;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:27:24,3:24:937:3:116:-2.68918,0,-76.5066 0/1:15:12,3:12:473:3:116:-6.30006,0,-38.3991 0/1:27:21,6:21:810:6:232:-13.117,0,-65.0769 dDocent_Contig_8729 14 . A T 791.644 . AB=0.511111;ABP=3.05855;AC=4;AF=0.666666;AN=6;AO=23;CIGAR=1X3M1X;DP=49;DPB=49;DPRA=5.625;EPP=52.9542;EPPR=50.7827;GTI=0;LEN=1;MEANALT=1;MQM=59.3043;MQMR=60;NS=3;NUMALT=2;ODDS=0;PAIRED=0.913043;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=906;QR=867;RO=22;RPL=0;RPP=52.9542;RPPR=50.7827;RPR=23;RUN=1;SAF=23;SAP=52.9542;SAR=0;SRF=22;SRP=50.7827;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|1:32:12,0,20:12:480:0,20:0,795:-62.1096,-65.7219,-105.263,0,-39.9398,-33.9192 1|1:4:0,4,0:0:0:4,0:153,0:-14.1383,-1.20412,0,-14.1383,-1.20412,-14.1383 0|1:13:10,0,3:10:387:0,3:0,111:-6.43922,-9.44952,-41.2477,0,-32.1718,-31.2687 dDocent_Contig_8730 40 . A C 46.6296 . AB=0.166667;ABP=26.1727;AC=2;AF=0.333333;AN=6;AO=4;CIGAR=1X;DP=44;DPB=44;DPRA=0.6;EPP=11.6962;EPPR=89.8692;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=162;QR=1598;RO=40;RPL=0;RPP=11.6962;RPPR=89.8692;RPR=4;RUN=1;SAF=4;SAP=11.6962;SAR=0;SRF=40;SRP=89.8692;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:20:20,0:20:800:0:0:0,-6.0206,-72.3159 0/1:5:4,1:4:153:1:41:-2.58942,0,-12.6319 0/1:19:16,3:16:645:3:121:-5.56063,0,-52.6629 dDocent_Contig_8731 63 . A G 378.435 . AB=0.46875;ABP=3.28173;AC=2;AF=0.333333;AN=6;AO=15;CIGAR=1X;DP=35;DPB=35;DPRA=5.33333;EPP=35.5824;EPPR=46.4397;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=559;QR=782;RO=20;RPL=15;RPP=35.5824;RPPR=46.4397;RPR=0;RUN=1;SAF=15;SAP=35.5824;SAR=0;SRF=20;SRP=46.4397;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:19:12,7:12:469:7:285:-20.3048,0,-36.8389 0/1:13:5,8:5:202:8:274:-21.0613,0,-14.6481 0/0:3:3,0:3:111:0:0:0,-0.90309,-10.3514 dDocent_Contig_8732 106 . N A 87.068 . AB=0;ABP=0;AC=4;AF=1;AN=4;AO=17;CIGAR=2X2M3I2M1X;DP=17;DPB=24.2857;DPRA=0;EPP=39.9253;EPPR=0;GTI=0;LEN=1;MEANALT=1;MQM=5.41176;MQMR=0;NS=2;NUMALT=1;ODDS=0;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=645;QR=0;RO=0;RPL=0;RPP=39.9253;RPPR=0;RPR=17;RUN=1;SAF=17;SAP=39.9253;SAR=0;SRF=0;SRP=0;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 1|1:15:0,15:0:0:15:569:-7.43182,-4.51545,0 .:.:.:.:.:.:.:. 1|1:2:0,2:0:0:2:76:-0.949717,-0.60206,0 dDocent_Contig_8733 127 . T C 258.695 . AB=0.257143;ABP=20.9405;AC=4;AF=0.666667;AN=6;AO=11;CIGAR=1X;DP=37;DPB=37;DPRA=0;EPP=26.8965;EPPR=59.4686;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=431;QR=983;RO=26;RPL=0;RPP=26.8965;RPPR=59.4686;RPR=11;RUN=1;SAF=0;SAP=26.8965;SAR=11;SRF=0;SRP=59.4686;SRR=26;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:24:19,5:19:716:5:195:-10.6995,0,-57.5448 1/1:2:0,2:0:0:2:78:-7.40347,-0.60206,0 0/1:11:7,4:7:267:4:158:-11.2891,0,-21.0809 dDocent_Contig_8734 7 . T G 376.559 . AB=0.25641;ABP=43.2104;AC=3;AF=0.5;AN=6;AO=20;CIGAR=1X2M1X;DP=78;DPB=78;DPRA=0;EPP=46.4397;EPPR=128.956;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=729;QR=2241;RO=58;RPL=0;RPP=46.4397;RPPR=128.956;RPR=20;RUN=1;SAF=20;SAP=46.4397;SAR=0;SRF=58;SRP=128.956;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|1:29:22,7:22:852:7:253:-14.388,0,-68.2726 0|1:12:5,7:5:192:7:268:-20.871,0,-14.0374 0|1:37:31,6:31:1197:6:208:-7.91981,0,-96.8881 dDocent_Contig_8735 172 . T C 111.056 . AB=0.0909091;ABP=50.9801;AC=3;AF=0.5;AN=6;AO=7;CIGAR=1X;DP=63;DPB=63;DPRA=0;EPP=18.2106;EPPR=122.441;GTI=0;LEN=1;MEANALT=1.33333;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=275;QR=2038;RO=55;RPL=7;RPP=18.2106;RPPR=122.441;RPR=0;RUN=1;SAF=0;SAP=18.2106;SAR=7;SRF=0;SRP=122.441;SRR=55;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:33:29,3:29:1076:3:117:-1.12751,0,-87.4283 1/1:3:0,3:0:0:3:117:-10.9104,-0.90309,0 0/0:27:26,1:26:962:1:41:0,-4.03324,-82.7878 dDocent_Contig_8736 11 . A C 239.87 . AB=0.178571;ABP=78.3914;AC=3;AF=0.5;AN=6;AO=15;CIGAR=1X;DP=84;DPB=84;DPRA=0;EPP=35.5824;EPPR=152.842;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=6.93889e-18;PAIRED=1;PAIREDR=0.971014;PAO=0;PQA=0;PQR=0;PRO=0;QA=596;QR=2752;RO=69;RPL=0;RPP=35.5824;RPPR=152.842;RPR=15;RUN=1;SAF=15;SAP=35.5824;SAR=0;SRF=69;SRP=152.842;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:61:52,9:52:2098:9:356:-14.0373,0,-170.634 0/1:7:3,4:3:119:4:159:-12.5842,0,-8.9878 0/1:16:14,2:14:535:2:81:-2.86925,0,-43.6603 dDocent_Contig_8737 1 . N G 197.078 . AB=0;ABP=0;AC=4;AF=1;AN=4;AO=6;CIGAR=1X;DP=6;DPB=6;DPRA=0;EPP=16.0391;EPPR=0;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=0;NS=2;NUMALT=1;ODDS=0;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=208;QR=0;RO=0;RPL=0;RPP=16.0391;RPPR=0;RPR=6;RUN=1;SAF=0;SAP=16.0391;SAR=6;SRF=0;SRP=0;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 1/1:3:0,3:0:0:3:104:-9.70309,-0.90309,0 1/1:3:0,3:0:0:3:104:-9.70309,-0.90309,0 ./.:.:.:.:.:.:.:. dDocent_Contig_8739 25 . C T 31.5774 . AB=0.142857;ABP=26.2761;AC=1;AF=0.166667;AN=6;AO=3;CIGAR=1M1D1M1X;DP=40;DPB=39.25;DPRA=2.21053;EPP=9.52472;EPPR=83.3548;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=118;QR=1456;RO=37;RPL=0;RPP=9.52472;RPPR=83.3548;RPR=3;RUN=1;SAF=3;SAP=9.52472;SAR=0;SRF=37;SRP=83.3548;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|1:21:18,3:18:716:3:118:-4.67995,0,-58.4478 0|0:2:2,0:2:62:0:0:0,-0.60206,-5.88849 0|0:17:17,0:17:678:0:0:0,-5.11751,-61.3516 dDocent_Contig_8740 10 . T G 59.6988 . AB=0.181818;ABP=22.3561;AC=1;AF=0.166667;AN=6;AO=6;CIGAR=1X;DP=140;DPB=140;DPRA=1.5;EPP=16.0391;EPPR=293.988;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=55.9776;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=0.641791;PAO=0;PQA=0;PQR=0;PRO=0;QA=223;QR=5369;RO=134;RPL=0;RPP=16.0391;RPPR=293.988;RPR=6;RUN=1;SAF=6;SAP=16.0391;SAR=0;SRF=134;SRP=293.988;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:83:81,2:81:3240:2:67:0,-18.6223,-282.64 0/1:22:18,4:18:721:4:156:-7.79378,0,-58.1095 0/0:35:35,0:35:1408:0:0:0,-10.536,-125.557 dDocent_Contig_8741 11 . A G 1203.37 . AB=0.142857;ABP=34.0313;AC=0;AF=0;AN=6;AO=4;CIGAR=1M1D1M1X1M;DP=105;DPB=90.6;DPRA=4.66667;EPP=11.6962;EPPR=74.6689;GTI=0;LEN=1;MEANALT=4;MQM=60;MQMR=60;NS=3;NUMALT=4;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=156;QR=1283;RO=33;RPL=0;RPP=11.6962;RPPR=74.6689;RPR=4;RUN=1;SAF=4;SAP=11.6962;SAR=0;SRF=33;SRP=74.6689;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|0:71:25,0,29,3,14:25:967:0,29,3,14:0,1110,117,530:-83.562,-91.0878,-170.516,0,-79.4307,-70.7008,-81.4835,-160.912,-69.8266,-160.009,-47.6401,-127.069,-35.9844,-117.465,-122.854 0|0:6:0,0,0,6,0:0:0:0,0,6,0:0,0,224,0:-20.4425,-20.4425,-20.4425,-20.4425,-20.4425,-20.4425,-1.80618,-1.80618,-1.80618,0,-20.4425,-20.4425,-20.4425,-1.80618,-20.4425 0|0:28:8,4,7,4,5:8:316:4,7,4,5:156,271,156,189:-19.8548,-9.439,-34.2416,0,-13.1838,-23.8999,-9.45253,-22.6358,-13.1973,-34.2551,-6.77331,-19.956,-10.5181,-19.9695,-31.2738 dDocent_Contig_8742 24 . G A 34.5376 . AB=0.25;ABP=7.35324;AC=1;AF=0.166667;AN=6;AO=2;CIGAR=1X;DP=25;DPB=25;DPRA=0.941176;EPP=7.35324;EPPR=52.9542;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=81;QR=934;RO=23;RPL=0;RPP=7.35324;RPPR=52.9542;RPR=2;RUN=1;SAF=2;SAP=7.35324;SAR=0;SRF=23;SRP=52.9542;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:11:11,0:11:448:0:0:0,-3.31133,-40.6758 0/0:6:6,0:6:242:0:0:0,-1.80618,-22.1564 0/1:8:6,2:6:244:2:81:-5.27749,0,-19.9306 dDocent_Contig_8743 18 . G T 336.089 . AB=0.5;ABP=3.0103;AC=1;AF=0.166667;AN=6;AO=2;CIGAR=1M1D2M1X2M;DP=41;DPB=38.5714;DPRA=0;EPP=7.35324;EPPR=52.9542;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=2;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=81;QR=903;RO=23;RPL=0;RPP=7.35324;RPPR=52.9542;RPR=2;RUN=1;SAF=2;SAP=7.35324;SAR=0;SRF=23;SRP=52.9542;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|0:15:11,0,3:11:432:0,3:0,120:-6.58858,-9.89991,-45.4296,0,-35.5429,-34.6398 0|1:4:2,2,0:2:80:2,0:81,0:-6.48161,0,-6.38767,-7.08367,-6.98973,-13.6714 0|0:22:10,0,12:10:391:0,12:0,381:-26.0615,-29.0718,-61.2587,0,-32.5362,-28.9239 dDocent_Contig_8744 15 . G A 309.425 . AB=0.196078;ABP=43.9277;AC=3;AF=0.5;AN=6;AO=13;CIGAR=1X1M1X;DP=66;DPB=66;DPRA=2.25;EPP=31.2394;EPPR=118.098;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=523;QR=2103;RO=53;RPL=0;RPP=31.2394;RPPR=118.098;RPR=13;RUN=1;SAF=13;SAP=31.2394;SAR=0;SRF=53;SRP=118.098;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|1:51:41,10:41:1624:10:403:-21.2773,0,-131.046 1|1:3:0,3:0:0:3:120:-11.1879,-0.90309,0 0|0:12:12,0:12:479:0:0:0,-3.61236,-43.4617 dDocent_Contig_8745 18 . G A 45.0466 . AB=0.133333;ABP=38.0434;AC=1;AF=0.166667;AN=6;AO=4;CIGAR=1X;DP=60;DPB=60;DPRA=2;EPP=11.6962;EPPR=124.613;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=1.73472e-18;PAIRED=0;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=163;QR=2216;RO=56;RPL=0;RPP=11.6962;RPPR=124.613;RPR=4;RUN=1;SAF=4;SAP=11.6962;SAR=0;SRF=56;SRP=124.613;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:30:26,4:26:1040:4:163:-6.02753,0,-84.8539 0/0:18:18,0:18:698:0:0:0,-5.41854,-63.1425 0/0:12:12,0:12:478:0:0:0,-3.61236,-43.3684 dDocent_Contig_8746 122 . A G 260.928 . AB=0.444444;ABP=3.25157;AC=3;AF=0.5;AN=6;AO=9;CIGAR=1X;DP=21;DPB=21;DPRA=1;EPP=22.5536;EPPR=29.068;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=0;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=329;QR=443;RO=12;RPL=0;RPP=22.5536;RPPR=29.068;RPR=9;RUN=1;SAF=0;SAP=22.5536;SAR=9;SRF=0;SRP=29.068;SRR=12;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:7:7,0:7:258:0:0:0,-2.10721,-23.5751 1/1:5:0,5:0:0:5:182:-16.735,-1.50515,0 0/1:9:5,4:5:185:4:147:-10.8806,0,-14.3007 dDocent_Contig_8747 21 . A G 297.014 . AB=0.458333;ABP=3.37221;AC=2;AF=0.333333;AN=6;AO=11;CIGAR=1X;DP=39;DPB=39;DPRA=0.8;EPP=26.8965;EPPR=63.8115;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=441;QR=1120;RO=28;RPL=0;RPP=26.8965;RPPR=63.8115;RPR=11;RUN=1;SAF=11;SAP=26.8965;SAR=0;SRF=28;SRP=63.8115;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:13:4,9:4:163:9:359:-28.7554,0,-11.145 0/0:15:15,0:15:603:0:0:0,-4.51545,-54.6078 0/1:11:9,2:9:354:2:82:-4.46835,0,-28.9076 dDocent_Contig_8750 11 . T A 462.693 . AB=0.102564;ABP=110.025;AC=0;AF=0;AN=6;AO=8;CIGAR=1X1M1X;DP=78;DPB=78;DPRA=0;EPP=20.3821;EPPR=85.7331;GTI=0;LEN=1;MEANALT=2;MQM=60;MQMR=59.5238;NS=3;NUMALT=2;ODDS=6.93889e-18;PAIRED=0;PAIREDR=0.97619;PAO=0;PQA=0;PQR=0;PRO=0;QA=268;QR=1634;RO=42;RPL=0;RPP=20.3821;RPPR=94.2121;RPR=8;RUN=1;SAF=0;SAP=20.3821;SAR=8;SRF=41;SRP=85.7331;SRR=1;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|0:43:27,4,12:27:1036:4,12:132,417:-19.7968,-17.2429,-101.115,0,-74.3941,-81.4472 0|0:12:7,1,4:7:278:1,4:33,140:-7.71287,-7.14726,-29.7905,0,-20.2856,-21.7413 0|0:23:8,3,12:8:320:3,12:103,412:-24.2825,-18.3145,-43.8191,0,-18.0529,-22.7889 dDocent_Contig_8751 18 . A G 215.741 . AB=0.321429;ABP=10.7656;AC=2;AF=0.333333;AN=6;AO=10;CIGAR=1X;DP=53;DPB=53;DPRA=0;EPP=24.725;EPPR=96.3836;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=405;QR=1723;RO=43;RPL=0;RPP=24.725;RPPR=96.3836;RPR=10;RUN=1;SAF=10;SAP=24.725;SAR=0;SRF=43;SRP=96.3836;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:25:24,1:24:955:1:41:0,-3.43118,-82.1555 0/1:16:12,4:12:489:4:159:-9.87435,0,-39.5448 0/1:12:7,5:7:279:5:205:-15.2226,0,-21.8664 dDocent_Contig_8755 34 . G A 485.817 . AB=0.16129;ABP=95.6831;AC=1;AF=0.166667;AN=6;AO=15;CIGAR=3M3I1M1X2M1X4M3X;DP=93;DPB=95.6667;DPRA=0;EPP=35.5824;EPPR=94.2121;GTI=0;LEN=1;MEANALT=4.33333;MQM=44;MQMR=60;NS=3;NUMALT=6;ODDS=0;PAIRED=1;PAIREDR=0.97619;PAO=0;PQA=0;PQR=0;PRO=0;QA=588;QR=1647;RO=42;RPL=0;RPP=35.5824;RPPR=94.2121;RPR=15;RUN=1;SAF=15;SAP=35.5824;SAR=0;SRF=42;SRP=94.2121;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|0:38:22,2,5,3,0,5,0:22:867:2,5,3,0,5,0:80,190,120,0,192,0:-9.13503,-9.17671,-79.9128,-0.71254,-65.4666,-70.5405,-5.99681,-70.7563,-62.2874,-76.4324,-15.7577,-80.5148,-72.0456,-77.3355,-87.0939,0,-64.7587,-56.2902,-61.5794,-71.3378,-69.8327,-15.7577,-80.5148,-72.0456,-77.3355,-87.0939,-71.3378,-87.0939 0|0:27:8,0,1,0,6,7,4:8:320:0,1,0,6,7,4:0,39,0,239,274,139:-20.1232,-22.5314,-48.8964,-19.4302,-45.7952,-45.4942,-22.5314,-48.8964,-45.7952,-48.8964,-2.8442,-29.2129,-26.1117,-29.2129,-27.4067,0,-26.3681,-23.2671,-26.3681,-6.68299,-24.2609,-11.2451,-37.6074,-34.5067,-37.6074,-17.9258,-15.0821,-36.4033 0|1:28:12,0,9,0,0,6,0:12:460:0,9,0,0,6,0:0,359,0,0,242,0:-24.8189,-28.4313,-66.1787,0,-37.7391,-35.0299,-28.4313,-66.1787,-37.7391,-66.1787,-28.4313,-66.1787,-37.7391,-66.1787,-66.1787,-8.4771,-46.2268,-17.7853,-46.2268,-46.2268,-44.4206,-28.4313,-66.1787,-37.7391,-66.1787,-66.1787,-46.2268,-66.1787 dDocent_Contig_8756 18 . C T 520.472 . AB=0.130435;ABP=30.2953;AC=0;AF=0;AN=6;AO=3;CIGAR=1X3M1X;DP=50;DPB=50;DPRA=0;EPP=9.52472;EPPR=61.6401;GTI=0;LEN=1;MEANALT=2;MQM=60;MQMR=60;NS=3;NUMALT=2;ODDS=6.93889e-18;PAIRED=0;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=119;QR=1071;RO=27;RPL=0;RPP=9.52472;RPPR=61.6401;RPR=3;RUN=1;SAF=3;SAP=9.52472;SAR=0;SRF=27;SRP=61.6401;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|0:12:6,0,6:6:238:0,6:0,231:-17.5403,-19.3465,-38.9443,0,-19.9882,-18.182 0|0:15:11,0,4:11:433:0,4:0,163:-10.543,-13.8543,-49.4649,0,-36.0139,-34.8098 0|0:23:10,3,10:10:400:3,10:119,395:-29.4868,-22.7008,-54.7505,0,-23.1577,-29.9424 dDocent_Contig_8758 7 . T C 50.0757 . AB=0.12963;ABP=67.3502;AC=2;AF=0.333333;AN=6;AO=7;CIGAR=1X;DP=58;DPB=58;DPRA=6.75;EPP=18.2106;EPPR=113.755;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=269;QR=1936;RO=51;RPL=0;RPP=18.2106;RPPR=113.755;RPR=7;RUN=1;SAF=7;SAP=18.2106;SAR=0;SRF=51;SRP=113.755;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:29:26,3:26:990:3:115:-1.99502,0,-80.6808 0/0:4:4,0:4:152:0:0:0,-1.20412,-14.0492 0/1:25:21,4:21:794:4:154:-6.70771,0,-64.258 dDocent_Contig_8759 98 . N G 127.607 . AB=0;ABP=0;AC=2;AF=1;AN=2;AO=4;CIGAR=1X;DP=4;DPB=4;DPRA=0;EPP=11.6962;EPPR=0;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=0;NS=1;NUMALT=1;ODDS=7.37776;PAIRED=1;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=138;QR=0;RO=0;RPL=4;RPP=11.6962;RPPR=0;RPR=0;RUN=1;SAF=4;SAP=11.6962;SAR=0;SRF=0;SRP=0;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 1/1:4:0,4:0:0:4:138:-12.7604,-1.20412,0 ./.:.:.:.:.:.:.:. ./.:.:.:.:.:.:.:. dDocent_Contig_8760 109 . A C 34.5696 . AB=0.2;ABP=14.7363;AC=1;AF=0.166667;AN=6;AO=3;CIGAR=1X;DP=81;DPB=81;DPRA=0.454545;EPP=9.52472;EPPR=172.385;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=105;QR=2667;RO=78;RPL=0;RPP=9.52472;RPPR=172.385;RPR=3;RUN=1;SAF=0;SAP=9.52472;SAR=3;SRF=0;SRP=172.385;SRR=78;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:49:49,0:49:1679:0:0:0,-14.7505,-151.397 0/1:15:12,3:12:408:3:105:-5.28071,0,-32.5318 0/0:17:17,0:17:580:0:0:0,-5.11751,-52.5221 dDocent_Contig_8761 87 . C T 6510.09 . AB=0.734483;ABP=141.505;AC=4;AF=0.666667;AN=6;AO=243;CIGAR=1X;DP=323;DPB=323;DPRA=0;EPP=530.678;EPPR=176.728;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=8342;QR=2730;RO=80;RPL=243;RPP=530.678;RPPR=176.728;RPR=0;RUN=1;SAF=243;SAP=530.678;SAR=0;SRF=80;SRP=176.728;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:191:60,131:60:2037:131:4489:-346.708,0,-126.106 1/1:33:3,30:3:104:30:1027:-83.0353,-0.230899,0 0/1:99:17,82:17:589:82:2826:-224.788,0,-23.5346 dDocent_Contig_8762 9 . T G 59.9649 . AB=0.25;ABP=11.6962;AC=2;AF=0.333333;AN=6;AO=4;CIGAR=1X;DP=17;DPB=17;DPRA=8;EPP=11.6962;EPPR=31.2394;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=151;QR=504;RO=13;RPL=0;RPP=11.6962;RPPR=31.2394;RPR=4;RUN=1;SAF=4;SAP=11.6962;SAR=0;SRF=13;SRP=31.2394;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:8:6,2:6:233:2:74:-4.61719,0,-18.9318 0/0:1:1,0:1:39:0:0:0,-0.30103,-3.89656 0/1:8:6,2:6:232:2:77:-4.9009,0,-18.8407 dDocent_Contig_8766 8 . A T 78.1293 . AB=0.142857;ABP=65.0524;AC=2;AF=0.333333;AN=6;AO=8;CIGAR=1X;DP=102;DPB=102;DPRA=0.608696;EPP=20.3821;EPPR=207.129;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=305;QR=3531;RO=94;RPL=0;RPP=20.3821;RPPR=207.129;RPR=8;RUN=1;SAF=8;SAP=20.3821;SAR=0;SRF=94;SRP=207.129;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:46:46,0:46:1737:0:0:0,-13.8474,-156.582 0/1:34:30,4:30:1123:4:150:-3.62965,0,-91.1335 0/1:22:18,4:18:671:4:155:-7.70278,0,-54.0891 dDocent_Contig_8768 28 . T A 208.431 . AB=0.333333;ABP=9.52472;AC=2;AF=0.333333;AN=6;AO=9;CIGAR=1X;DP=37;DPB=37;DPRA=1.35;EPP=22.5536;EPPR=63.8115;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=337;QR=1122;RO=28;RPL=0;RPP=22.5536;RPPR=63.8115;RPR=9;RUN=1;SAF=9;SAP=22.5536;SAR=0;SRF=28;SRP=63.8115;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:22:14,8:14:556:8:318:-22.3624,0,-43.7568 0/1:5:4,1:4:160:1:19:-0.394816,0,-13.2778 0/0:10:10,0:10:406:0:0:0,-3.0103,-36.9006 dDocent_Contig_8769 129 . C A 128.794 . AB=0.333333;ABP=7.35324;AC=2;AF=0.333333;AN=6;AO=6;CIGAR=1X;DP=24;DPB=24;DPRA=1.5;EPP=16.0391;EPPR=42.0968;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=234;QR=667;RO=18;RPL=0;RPP=16.0391;RPPR=42.0968;RPR=6;RUN=1;SAF=0;SAP=16.0391;SAR=6;SRF=0;SRP=42.0968;SRR=18;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:10:7,3:7:262:3:117:-7.90008,0,-20.9262 0/0:6:6,0:6:221:0:0:0,-1.80618,-20.2424 0/1:8:5,3:5:184:3:117:-8.50214,0,-14.5069 dDocent_Contig_8771 15 . T C 766.461 . AB=0.4375;ABP=5.18177;AC=3;AF=0.5;AN=6;AO=28;CIGAR=1X;DP=64;DPB=64;DPRA=0;EPP=63.8115;EPPR=81.1833;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=1115;QR=1453;RO=36;RPL=0;RPP=63.8115;RPPR=81.1833;RPR=28;RUN=1;SAF=28;SAP=63.8115;SAR=0;SRF=36;SRP=81.1833;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:33:16,17:16:650:17:672:-50.8758,0,-48.899 0/1:10:7,3:7:273:3:120:-8.17739,0,-21.9247 0/1:21:13,8:13:530:8:323:-23.1158,0,-41.725 dDocent_Contig_8773 44 . C T 734.341 . AB=0.267241;ABP=57.5966;AC=3;AF=0.5;AN=6;AO=31;CIGAR=1X;DP=116;DPB=116;DPRA=0;EPP=70.3259;EPPR=187.585;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=0.917647;PAO=0;PQA=0;PQR=0;PRO=0;QA=1253;QR=3392;RO=85;RPL=0;RPP=70.3259;RPPR=187.585;RPR=31;RUN=1;SAF=31;SAP=70.3259;SAR=0;SRF=85;SRP=187.585;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:82:56,26:56:2216:26:1051:-70.1959,0,-174.929 0/1:5:3,2:3:120:2:80:-6.08664,0,-9.68216 0/1:29:26,3:26:1056:3:122:-2.64262,0,-86.5968 dDocent_Contig_8775 149 . T G 79.5613 . AB=0;ABP=0;AC=2;AF=0.333333;AN=6;AO=2;CIGAR=1X;DP=37;DPB=37;DPRA=0.114286;EPP=7.35324;EPPR=79.0118;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=1.69407e-21;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=82;QR=1377;RO=35;RPL=0;RPP=7.35324;RPPR=79.0118;RPR=2;RUN=1;SAF=0;SAP=7.35324;SAR=2;SRF=0;SRP=79.0118;SRR=35;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:23:23,0:23:898:0:0:0,-6.92369,-81.1128 1/1:2:0,2:0:0:2:82:-7.77968,-0.60206,0 0/0:12:12,0:12:479:0:0:0,-3.61236,-43.4591 dDocent_Contig_8776 11 . C A 128.897 . AB=0.177778;ABP=43.5927;AC=1;AF=0.166667;AN=6;AO=15;CIGAR=1X;DP=191;DPB=191;DPRA=2.08108;EPP=35.5824;EPPR=385.189;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=6.93889e-18;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=591;QR=7069;RO=176;RPL=0;RPP=35.5824;RPPR=385.189;RPR=15;RUN=1;SAF=15;SAP=35.5824;SAR=0;SRF=176;SRP=385.189;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:109:102,7:102:4088:7:281:0,-7.15009,-342.226 0/0:37:37,0:37:1481:0:0:0,-11.1381,-133.532 0/1:45:37,8:37:1500:8:310:-14.7136,0,-121.693 dDocent_Contig_8777 23 . A G 1104.65 . AB=0;ABP=0;AC=6;AF=1;AN=6;AO=61;CIGAR=1X;DP=63;DPB=63;DPRA=0;EPP=135.47;EPPR=7.35324;GTI=0;LEN=1;MEANALT=1;MQM=20.7705;MQMR=5;NS=3;NUMALT=1;ODDS=0;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=2184;QR=73;RO=2;RPL=0;RPP=135.47;RPPR=7.35324;RPR=61;RUN=1;SAF=0;SAP=135.47;SAR=61;SRF=0;SRP=7.35324;SRR=2;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 1/1:30:0,30:0:0:30:1080:-60.8537,-9.0309,0 1/1:5:0,5:0:0:5:171:-10.0612,-1.50515,0 1/1:28:2,26:2:73:26:933:-38.9476,-7.47924,0 dDocent_Contig_8779 9 . T C 1533.79 . AB=0.41573;ABP=8.49998;AC=4;AF=0.666667;AN=6;AO=38;CIGAR=1X2M1X;DP=90;DPB=90;DPRA=0;EPP=85.5263;EPPR=46.4397;GTI=0;LEN=1;MEANALT=1.66667;MQM=60;MQMR=60;NS=3;NUMALT=2;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=1484;QR=786;RO=20;RPL=0;RPP=85.5263;RPPR=46.4397;RPR=38;RUN=1;SAF=38;SAP=85.5263;SAR=0;SRF=20;SRP=46.4397;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 1|0:59:13,29,17:13:512:29,17:1142,687:-104.558,-14.5273,-47.9139,-51.8301,0,-88.8335 1|1:1:0,1,0:0:0:1,0:38,0:-3.79727,-0.30103,0,-3.79727,-0.30103,-3.79727 1|0:30:7,8,15:7:274:8,15:304,587:-48.544,-25.7257,-45.8469,-2.38868,0,-20.4079 dDocent_Contig_8780 83 . A C 64.9833 . AB=0.2;ABP=26.4622;AC=2;AF=0.5;AN=4;AO=6;CIGAR=1X;DP=30;DPB=30;DPRA=0;EPP=16.0391;EPPR=55.1256;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=2;NUMALT=1;ODDS=0;PAIRED=0.666667;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=206;QR=804;RO=24;RPL=6;RPP=16.0391;RPPR=55.1256;RPR=0;RUN=1;SAF=6;SAP=16.0391;SAR=0;SRF=24;SRP=55.1256;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:20:16,4:16:524:4:136:-6.55522,0,-41.45 ./.:.:.:.:.:.:.:. 0/1:10:8,2:8:280:2:70:-3.6371,0,-22.5297 dDocent_Contig_8783 7 . T C 2280.91 . AB=0.136364;ABP=28.2783;AC=0;AF=0;AN=6;AO=3;CIGAR=1X1M1X1M;DP=238;DPB=240.75;DPRA=0;EPP=9.52472;EPPR=296.159;GTI=0;LEN=1;MEANALT=3;MQM=60;MQMR=60;NS=3;NUMALT=3;ODDS=0;PAIRED=1;PAIREDR=0.962963;PAO=0;PQA=0;PQR=0;PRO=0;QA=117;QR=5147;RO=135;RPL=0;RPP=9.52472;RPPR=296.159;RPR=3;RUN=1;SAF=3;SAP=9.52472;SAR=0;SRF=135;SRP=296.159;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|0:133:82,0,3,47:82:3118:0,3,47:0,115,1801:-123.124,-147.808,-403.526,-138.369,-394.087,-393.184,0,-255.715,-246.276,-241.567 0|0:22:7,3,0,11:7:269:3,0,11:117,0,423:-32.6158,-25.1044,-46.2846,-34.723,-47.1877,-56.806,0,-12.461,-22.0799,-18.7686 0|0:83:46,0,6,29:46:1760:0,6,29:0,228,1117:-77.8741,-91.7215,-236.147,-73.024,-217.449,-215.643,0,-144.428,-125.73,-135.698 dDocent_Contig_8784 98 . N G 65.5375 . AB=0;ABP=0;AC=2;AF=1;AN=2;AO=2;CIGAR=1X;DP=2;DPB=2;DPRA=0;EPP=7.35324;EPPR=0;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=0;NS=1;NUMALT=1;ODDS=5.99146;PAIRED=1;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=69;QR=0;RO=0;RPL=2;RPP=7.35324;RPPR=0;RPR=0;RUN=1;SAF=2;SAP=7.35324;SAR=0;SRF=0;SRP=0;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 1/1:2:0,2:0:0:2:69:-6.55266,-0.60206,0 ./.:.:.:.:.:.:.:. ./.:.:.:.:.:.:.:. dDocent_Contig_8785 25 . T C 1294.03 . AB=0.281081;ABP=80.0213;AC=3;AF=0.5;AN=6;AO=52;CIGAR=1X;DP=185;DPB=185;DPRA=0;EPP=115.927;EPPR=291.816;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=2107;QR=5305;RO=133;RPL=0;RPP=115.927;RPPR=291.816;RPR=52;RUN=1;SAF=52;SAP=115.927;SAR=0;SRF=133;SRP=291.816;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:144:104,40:104:4153:40:1616:-102.318,0,-330.384 0/1:11:7,4:7:286:4:164:-11.8386,0,-22.8035 0/1:30:22,8:22:866:8:327:-20.7692,0,-69.2204 dDocent_Contig_8786 58 . C T 676.29 . AB=0.416667;ABP=6.62942;AC=3;AF=0.5;AN=6;AO=25;CIGAR=1X;DP=60;DPB=60;DPRA=0;EPP=57.2971;EPPR=79.0118;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=980;QR=1409;RO=35;RPL=25;RPP=57.2971;RPPR=79.0118;RPR=0;RUN=1;SAF=25;SAP=57.2971;SAR=0;SRF=35;SRP=79.0118;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:40:20,20:20:815:20:778:-58.2903,0,-61.623 0/1:7:3,4:3:121:4:162:-12.8597,0,-9.17278 0/1:13:12,1:12:473:1:40:-0.0822893,0,-39.004 dDocent_Contig_8787 12 . C T 39.8631 . AB=0.111111;ABP=73.9451;AC=1;AF=0.166667;AN=6;AO=7;CIGAR=1X;DP=168;DPB=168;DPRA=4.44118;EPP=18.2106;EPPR=352.617;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=282;QR=6411;RO=161;RPL=0;RPP=18.2106;RPPR=352.617;RPR=7;RUN=1;SAF=7;SAP=18.2106;SAR=0;SRF=161;SRP=352.617;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:97:96,1:96:3828:1:41:0,-25.1053,-340.423 0/0:17:17,0:17:678:0:0:0,-5.11751,-61.3504 0/1:54:48,6:48:1905:6:241:-5.81018,0,-155.399 dDocent_Contig_8788 112 . A C 234.729 . AB=0.269231;ABP=27.0635;AC=3;AF=0.5;AN=6;AO=14;CIGAR=1X;DP=52;DPB=52;DPRA=0;EPP=33.4109;EPPR=85.5263;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=3.46945e-18;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=484;QR=1334;RO=38;RPL=0;RPP=33.4109;RPPR=85.5263;RPR=14;RUN=1;SAF=0;SAP=33.4109;SAR=14;SRF=0;SRP=85.5263;SRR=38;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:33:24,9:24:835:9:313:-18.5731,0,-65.5323 0/1:4:3,1:3:107:1:35:-2.29451,0,-8.77805 0/1:15:11,4:11:392:4:136:-8.06037,0,-31.1046 dDocent_Contig_8789 7 . T A 68.0324 . AB=0.25;ABP=24.725;AC=2;AF=0.333333;AN=6;AO=10;CIGAR=1X;DP=41;DPB=41;DPRA=20;EPP=3.87889;EPPR=54.0749;GTI=0;LEN=1;MEANALT=1;MQM=24.6;MQMR=60;NS=3;NUMALT=1;ODDS=3.46945e-18;PAIRED=0;PAIREDR=0.83871;PAO=0;PQA=0;PQR=0;PRO=0;QA=373;QR=1178;RO=31;RPL=0;RPP=24.725;RPPR=70.3259;RPR=10;RUN=1;SAF=6;SAP=3.87889;SAR=4;SRF=29;SRP=54.0749;SRR=2;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:24:18,6:18:688:6:223:-5.63706,0,-55.0284 0/0:1:1,0:1:33:0:0:0,-0.30103,-3.29913 0/1:16:12,4:12:457:4:150:-4.68793,0,-36.6629 dDocent_Contig_8790 7 . T A 1144.43 . AB=0.379518;ABP=23.9402;AC=3;AF=0.5;AN=6;AO=63;CIGAR=1X;DP=166;DPB=166;DPRA=0;EPP=139.813;EPPR=226.672;GTI=0;LEN=1;MEANALT=1;MQM=38.1746;MQMR=56.5049;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=2422;QR=3926;RO=103;RPL=0;RPP=139.813;RPPR=226.672;RPR=63;RUN=1;SAF=63;SAP=139.813;SAR=0;SRF=103;SRP=226.672;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:75:48,27:48:1815:27:1035:-45.2417,0,-140.944 0/1:34:19,15:19:727:15:580:-29.7225,0,-52.1838 0/1:57:36,21:36:1384:21:807:-45.0015,0,-106.101 dDocent_Contig_8791 9 . T C 77.769 . AB=0.235294;ABP=13.3567;AC=1;AF=0.166667;AN=6;AO=4;CIGAR=1X;DP=44;DPB=44;DPRA=1.25926;EPP=11.6962;EPPR=89.8692;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=156;QR=1528;RO=40;RPL=0;RPP=11.6962;RPPR=89.8692;RPR=4;RUN=1;SAF=4;SAP=11.6962;SAR=0;SRF=40;SRP=89.8692;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:17:13,4:13:498:4:156:-9.29978,0,-40.0504 0/0:16:16,0:16:605:0:0:0,-4.81648,-54.7883 0/0:11:11,0:11:425:0:0:0,-3.31133,-38.6039 dDocent_Contig_8793 10 . C T 642.234 . AB=0.478261;ABP=3.19912;AC=3;AF=0.5;AN=6;AO=22;CIGAR=1X;DP=46;DPB=46;DPRA=0;EPP=50.7827;EPPR=55.1256;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=896;QR=972;RO=24;RPL=0;RPP=50.7827;RPPR=55.1256;RPR=22;RUN=1;SAF=22;SAP=50.7827;SAR=0;SRF=24;SRP=55.1256;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:29:11,18:11:448:18:735:-57.7427,0,-31.9461 0/1:13:12,1:12:483:1:41:-0.181177,0,-39.9073 0/1:4:1,3:1:41:3:120:-9.98319,0,-2.89045 dDocent_Contig_8794 14 . T C 1494.53 . AB=0.537634;ABP=4.15441;AC=3;AF=0.5;AN=6;AO=50;CIGAR=1X;DP=93;DPB=93;DPRA=0;EPP=111.584;EPPR=96.3836;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=0.976744;PAO=0;PQA=0;PQR=0;PRO=0;QA=2022;QR=1725;RO=43;RPL=0;RPP=111.584;RPPR=96.3836;RPR=50;RUN=1;SAF=50;SAP=111.584;SAR=0;SRF=43;SRP=96.3836;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:61:26,35:26:1048:35:1412:-108.966,0,-76.2472 0/1:5:2,3:2:74:3:122:-9.86734,0,-5.51887 0/1:27:15,12:15:603:12:488:-36.1431,0,-46.4785 dDocent_Contig_8795 9 . T C 1201.15 . AB=0.468085;ABP=3.84193;AC=3;AF=0.5;AN=6;AO=44;CIGAR=1X;DP=94;DPB=94;DPRA=0;EPP=98.5551;EPPR=111.584;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=1699;QR=1928;RO=50;RPL=0;RPP=98.5551;RPPR=111.584;RPR=44;RUN=1;SAF=44;SAP=98.5551;SAR=0;SRF=50;SRP=111.584;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:41:31,10:31:1191:10:386:-22.7549,0,-95.1436 0/1:16:10,6:10:387:6:227:-15.9763,0,-30.371 0/1:37:9,28:9:350:28:1086:-86.9064,0,-20.7232 dDocent_Contig_8796 18 . G A 866.768 . AB=0.5;ABP=3.0103;AC=3;AF=0.5;AN=6;AO=31;CIGAR=1X;DP=62;DPB=62;DPRA=0;EPP=70.3259;EPPR=70.3259;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=1220;QR=1224;RO=31;RPL=0;RPP=70.3259;RPPR=70.3259;RPR=31;RUN=1;SAF=31;SAP=70.3259;SAR=0;SRF=31;SRP=70.3259;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:28:12,16:12:476:16:635:-49.0574,0,-34.7629 0/1:15:9,6:9:356:6:238:-17.2784,0,-27.886 0/1:19:10,9:10:392:9:347:-25.8639,0,-29.9167 dDocent_Contig_8798 111 . A G 355.632 . AB=0.363636;ABP=4.78696;AC=1;AF=0.166667;AN=6;AO=4;CIGAR=1X2M1X;DP=28;DPB=28;DPRA=0;EPP=11.6962;EPPR=24.725;GTI=0;LEN=1;MEANALT=3;MQM=44;MQMR=60;NS=3;NUMALT=3;ODDS=0;PAIRED=0;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=137;QR=343;RO=10;RPL=0;RPP=11.6962;RPPR=24.725;RPR=4;RUN=1;SAF=0;SAP=11.6962;SAR=4;SRF=0;SRP=24.725;SRR=10;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|0:8:5,0,2,1:5:173:0,2,1:0,69,34:-4.1039,-5.60905,-19.6699,0,-14.0642,-13.4621,-2.85272,-16.9126,-11.3072,-16.6116 1|0:11:0,4,1,6:0:0:4,1,6:137,18,199:-27.2067,-16.2286,-15.0245,-25.9017,-14.9313,-25.6007,-11.0943,0,-9.807,-9.28814 0|0:9:5,0,4,0:5:170:0,4,0:0,135,0:-9.77418,-11.2793,-25.0705,0,-14.1296,-12.9255,-11.2793,-25.0705,-14.1296,-25.0705 dDocent_Contig_8802 13 . T C 862.667 . AB=0.317757;ABP=33.8777;AC=3;AF=0.5;AN=6;AO=34;CIGAR=1X;DP=107;DPB=107;DPRA=0;EPP=76.8404;EPPR=161.528;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=0.986301;PAO=0;PQA=0;PQR=0;PRO=0;QA=1366;QR=2947;RO=73;RPL=0;RPP=76.8404;RPPR=161.528;RPR=34;RUN=1;SAF=34;SAP=76.8404;SAR=0;SRF=73;SRP=161.528;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:63:42,21:42:1700:21:842:-57.1263,0,-134.251 0/1:15:11,4:11:435:4:162:-10.4515,0,-34.9871 0/1:29:20,9:20:812:9:362:-24.2118,0,-64.6653 dDocent_Contig_8803 35 . T C 156.083 . AB=0.352941;ABP=6.20364;AC=1;AF=0.166667;AN=6;AO=6;CIGAR=1X;DP=27;DPB=27;DPRA=3.4;EPP=16.0391;EPPR=48.6112;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=59.6667;NS=3;NUMALT=1;ODDS=0;PAIRED=0;PAIREDR=0.714286;PAO=0;PQA=0;PQR=0;PRO=0;QA=243;QR=802;RO=21;RPL=0;RPP=16.0391;RPPR=48.6112;RPR=6;RUN=1;SAF=6;SAP=16.0391;SAR=0;SRF=21;SRP=48.6112;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:17:11,6:11:405:6:243:-17.1305,0,-31.6606 0/0:1:1,0:1:40:0:0:0,-0.30103,-3.99568 0/0:9:9,0:9:357:0:0:0,-2.70927,-32.4921 dDocent_Contig_8804 38 . C G 707.378 . AB=0.564103;ABP=4.40227;AC=4;AF=0.666667;AN=6;AO=24;CIGAR=1M7D3M1X;DP=41;DPB=27;DPRA=0;EPP=55.1256;EPPR=37.7539;GTI=0;LEN=1;MEANALT=1.33333;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=942;QR=626;RO=16;RPL=0;RPP=55.1256;RPPR=37.7539;RPR=24;RUN=1;SAF=24;SAP=55.1256;SAR=0;SRF=16;SRP=37.7539;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|1:26:11,14:11:428:14:555:-42.5924,0,-31.1681 1|1:2:0,2:0:0:2:80:-7.59179,-0.60206,0 0|1:13:5,8:5:198:8:307:-24.0761,0,-14.284 dDocent_Contig_8805 22 . T A 1004.74 . AB=0.173333;ABP=281.075;AC=3;AF=0.5;AN=6;AO=52;CIGAR=1X4M;DP=300;DPB=300;DPRA=0;EPP=115.927;EPPR=482.906;GTI=0;LEN=1;MEANALT=2.33333;MQM=60;MQMR=60;NS=3;NUMALT=2;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=2089;QR=8586;RO=221;RPL=0;RPP=115.927;RPPR=482.906;RPR=52;RUN=1;SAF=52;SAP=115.927;SAR=0;SRF=221;SRP=482.906;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|1:180:122,19,34:122:4708:19,34:749,1372:-76.3725,-51.4789,-432.328,0,-324.95,-376.339 0|1:32:27,0,5:27:1057:0,5:0,190:-7.83101,-15.9588,-102.88,0,-87.3023,-85.7972 0|1:88:72,2,13:72:2821:2,13:78,527:-21.7929,-37.0573,-268.407,0,-225.55,-228.048 dDocent_Contig_8806 57 . C A 205.384 . AB=0.36;ABP=7.26639;AC=3;AF=0.5;AN=6;AO=9;CIGAR=1X;DP=25;DPB=25;DPRA=0;EPP=22.5536;EPPR=37.7539;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=360;QR=638;RO=16;RPL=9;RPP=22.5536;RPPR=37.7539;RPR=0;RUN=1;SAF=9;SAP=22.5536;SAR=0;SRF=16;SRP=37.7539;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:12:8,4:8:322:4:158:-10.987,0,-25.7358 0/1:4:3,1:3:115:1:41:-2.89045,0,-9.51998 0/1:9:5,4:5:201:4:161:-12.1656,0,-15.7616 dDocent_Contig_8807 8 . A G 714.995 . AB=0.409091;ABP=4.58955;AC=4;AF=0.666667;AN=6;AO=23;CIGAR=1X;DP=36;DPB=36;DPRA=0;EPP=52.9542;EPPR=31.2394;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=1.73472e-18;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=895;QR=490;RO=13;RPL=0;RPP=52.9542;RPPR=31.2394;RPR=23;RUN=1;SAF=23;SAP=52.9542;SAR=0;SRF=13;SRP=31.2394;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:12:7,5:7:267:5:193:-14.129,0,-20.7801 0/1:10:6,4:6:223:4:156:-11.407,0,-17.4164 1/1:14:0,14:0:0:14:546:-49.4864,-4.21442,0 dDocent_Contig_8808 144 . A G 190.356 . AB=0.3125;ABP=12.7819;AC=2;AF=0.333333;AN=6;AO=10;CIGAR=8M1X4M;DP=63;DPB=63.6154;DPRA=0.516129;EPP=24.725;EPPR=113.755;GTI=0;LEN=1;MEANALT=1.5;MQM=54;MQMR=60;NS=3;NUMALT=2;ODDS=0;PAIRED=0;PAIREDR=0.901961;PAO=0;PQA=0;PQR=0;PRO=0;QA=348;QR=1747;RO=51;RPL=0;RPP=24.725;RPPR=113.755;RPR=10;RUN=1;SAF=0;SAP=24.725;SAR=10;SRF=0;SRP=113.755;SRR=51;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|0:31:31,0,0:31:1070:0,0:0,0:0,-9.33193,-96.6099,-9.33193,-96.6099,-96.6099 0|1:7:2,0,5:2:62:0,5:0,174:-13.8768,-14.4789,-19.4451,0,-5.2869,-3.78175 0|1:25:18,2,5:18:615:2,5:79,174:-8.67922,-7.5837,-56.8886,0,-43.3579,-48.3587 dDocent_Contig_8809 13 . G A 158.754 . AB=0.222222;ABP=27.1378;AC=2;AF=0.333333;AN=6;AO=8;CIGAR=1X;DP=47;DPB=47;DPRA=1.63636;EPP=20.3821;EPPR=87.6977;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=0;PAIREDR=0.974359;PAO=0;PQA=0;PQR=0;PRO=0;QA=317;QR=1523;RO=39;RPL=0;RPP=20.3821;RPPR=87.6977;RPR=8;RUN=1;SAF=8;SAP=20.3821;SAR=0;SRF=39;SRP=87.6977;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:26:19,7:19:747:7:276:-17.3811,0,-59.7231 0/0:11:11,0:11:433:0:0:0,-3.31133,-39.3229 0/1:10:9,1:9:343:1:41:-1.08427,0,-28.204 dDocent_Contig_8812 13 . A G 59.3622 . AB=0.25;ABP=9.52472;AC=1;AF=0.166667;AN=6;AO=5;CIGAR=1X;DP=85;DPB=85;DPRA=1.43182;EPP=13.8677;EPPR=176.728;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=0.85;PAO=0;PQA=0;PQR=0;PRO=0;QA=202;QR=3176;RO=80;RPL=0;RPP=13.8677;RPPR=176.728;RPR=5;RUN=1;SAF=5;SAP=13.8677;SAR=0;SRF=80;SRP=176.728;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:51:49,2:49:1940:2:80:0,-7.76095,-167.209 0/1:12:9,3:9:361:3:122:-7.76013,0,-29.2415 0/0:22:22,0:22:875:0:0:0,-6.62266,-79.0495 dDocent_Contig_8813 20 . G A 1115.35 . AB=0.333333;ABP=34.8586;AC=3;AF=0.5;AN=6;AO=44;CIGAR=1X;DP=132;DPB=132;DPRA=0;EPP=98.5551;EPPR=185.513;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=1731;QR=3487;RO=88;RPL=0;RPP=98.5551;RPPR=194.1;RPR=44;RUN=1;SAF=44;SAP=98.5551;SAR=0;SRF=87;SRP=185.513;SRR=1;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:69:48,21:48:1880:21:830:-54.2343,0,-148.635 0/1:8:3,5:3:123:5:201:-16.0627,0,-9.05655 0/1:55:37,18:37:1484:18:700:-46.7612,0,-117.249 dDocent_Contig_8814 12 . G A 188.752 . AB=0.137255;ABP=119.589;AC=1;AF=0.166667;AN=6;AO=14;CIGAR=1X;DP=188;DPB=188;DPRA=2.37209;EPP=33.4109;EPPR=380.846;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=0;PAIREDR=0.12069;PAO=0;PQA=0;PQR=0;PRO=0;QA=564;QR=6934;RO=174;RPL=0;RPP=33.4109;RPPR=380.846;RPR=14;RUN=1;SAF=14;SAP=33.4109;SAR=0;SRF=174;SRP=380.846;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:102:88,14:88:3534:14:564:-20.3981,0,-287.379 0/0:35:35,0:35:1349:0:0:0,-10.536,-121.663 0/0:51:51,0:51:2051:0:0:0,-15.3525,-184.771 dDocent_Contig_8815 32 . C A 127.225 . AB=0.21875;ABP=24.9965;AC=2;AF=0.333333;AN=6;AO=7;CIGAR=1X;DP=35;DPB=35;DPRA=5.33333;EPP=18.2106;EPPR=63.8115;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=0;PAIREDR=0.607143;PAO=0;PQA=0;PQR=0;PRO=0;QA=279;QR=1126;RO=28;RPL=0;RPP=18.2106;RPPR=63.8115;RPR=7;RUN=1;SAF=7;SAP=18.2106;SAR=0;SRF=28;SRP=63.8115;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:18:14,4:14:563:4:159:-9.27229,0,-45.5949 0/0:3:3,0:3:120:0:0:0,-0.90309,-11.1873 0/1:14:11,3:11:443:3:120:-6.97289,0,-36.0117 dDocent_Contig_8816 9 . T A 117.675 . AB=0.233333;ABP=21.5402;AC=2;AF=0.333333;AN=6;AO=9;CIGAR=1X;DP=75;DPB=75;DPRA=0;EPP=22.5536;EPPR=146.327;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=340;QR=2540;RO=66;RPL=0;RPP=22.5536;RPPR=146.327;RPR=9;RUN=1;SAF=9;SAP=22.5536;SAR=0;SRF=66;SRP=146.327;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:45:43,2:43:1654:2:78:0,-6.14288,-141.72 0/1:11:9,2:9:344:2:78:-4.09214,0,-28.0052 0/1:19:14,5:14:542:5:184:-11.1971,0,-43.4064 dDocent_Contig_8818 12 . A G 220.42 . AB=0.478261;ABP=3.10471;AC=2;AF=0.333333;AN=6;AO=11;CIGAR=1X;DP=42;DPB=42;DPRA=0.605263;EPP=26.8965;EPPR=70.3259;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=0;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=353;QR=1253;RO=31;RPL=0;RPP=26.8965;RPPR=70.3259;RPR=11;RUN=1;SAF=11;SAP=26.8965;SAR=0;SRF=31;SRP=70.3259;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:19:19,0:19:766:0:0:0,-5.71957,-69.2605 0/1:6:1,5:1:40:5:160:-12.9105,0,-2.1895 0/1:17:11,6:11:447:6:193:-12.5697,0,-35.4684 dDocent_Contig_8820 20 . C T 79.0593 . AB=0.0847458;ABP=91.3782;AC=1;AF=0.166667;AN=6;AO=6;CIGAR=2X;DP=133;DPB=133;DPRA=0;EPP=16.0391;EPPR=263.587;GTI=0;LEN=1;MEANALT=2;MQM=60;MQMR=60;NS=3;NUMALT=2;ODDS=6.93889e-18;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=244;QR=4702;RO=120;RPL=0;RPP=16.0391;RPPR=263.587;RPR=6;RUN=1;SAF=6;SAP=16.0391;SAR=0;SRF=120;SRP=263.587;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|0:74:71,1,2:71:2816:1,2:41,82:0,-17.989,-249.457,-14.605,-242.99,-245.772 0|0:38:33,1,4:33:1249:1,4:41,156:-2.87212,-9.41806,-111.47,0,-98.948,-101.129 0|1:21:16,4,1:16:637:4,1:162,41:-8.53768,0,-51.2365,-9.96909,-49.0558,-62.1143 dDocent_Contig_8821 98 . N T 160.938 . AB=0;ABP=0;AC=2;AF=1;AN=2;AO=5;CIGAR=5X;DP=5;DPB=5.2;DPRA=0;EPP=13.8677;EPPR=0;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=0;NS=1;NUMALT=1;ODDS=8.07091;PAIRED=1;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=175;QR=0;RO=0;RPL=5;RPP=13.8677;RPPR=0;RPR=0;RUN=1;SAF=5;SAP=13.8677;SAR=0;SRF=0;SRP=0;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 1|1:5:0,5:0:0:5:175:-16.0937,-1.50515,0 .:.:.:.:.:.:.:. .:.:.:.:.:.:.:. dDocent_Contig_8823 23 . C T 37.8176 . AB=0.2;ABP=14.7363;AC=2;AF=0.333333;AN=6;AO=3;CIGAR=1X;DP=37;DPB=37;DPRA=0.340909;EPP=9.52472;EPPR=68.4099;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=58.7059;NS=3;NUMALT=1;ODDS=0;PAIRED=0;PAIREDR=0.911765;PAO=0;PQA=0;PQR=0;PRO=0;QA=122;QR=1329;RO=34;RPL=0;RPP=9.52472;RPPR=76.8404;RPR=3;RUN=1;SAF=3;SAP=9.52472;SAR=0;SRF=33;SRP=68.4099;SRR=1;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:22:22,0:22:840:0:0:0,-6.62266,-75.7962 0/1:5:4,1:4:163:1:40:-2.49053,0,-13.5533 0/1:10:8,2:8:326:2:82:-4.76938,0,-26.5781 dDocent_Contig_8824 11 . A T 30.4219 . AB=0.142857;ABP=26.2761;AC=1;AF=0.166667;AN=6;AO=3;CIGAR=1X;DP=71;DPB=71;DPRA=0.84;EPP=9.52472;EPPR=150.67;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=0;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=120;QR=2734;RO=68;RPL=0;RPP=9.52472;RPPR=150.67;RPR=3;RUN=1;SAF=3;SAP=9.52472;SAR=0;SRF=68;SRP=150.67;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:44:44,0:44:1769:0:0:0,-13.2453,-159.424 0/0:6:6,0:6:244:0:0:0,-1.80618,-22.3388 0/1:21:18,3:18:721:3:120:-4.86568,0,-58.8927 dDocent_Contig_8825 19 . A G 203.603 . AB=0.310345;ABP=12.0706;AC=2;AF=0.333333;AN=6;AO=9;CIGAR=1X;DP=31;DPB=31;DPRA=7.25;EPP=22.5536;EPPR=50.7827;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=1.73472e-18;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=354;QR=872;RO=22;RPL=0;RPP=22.5536;RPPR=50.7827;RPR=9;RUN=1;SAF=9;SAP=22.5536;SAR=0;SRF=22;SRP=50.7827;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:15:11,4:11:436:4:157:-9.99173,0,-35.0787 0/0:2:2,0:2:82:0:0:0,-0.60206,-7.77968 0/1:14:9,5:9:354:5:197:-13.8911,0,-28.0068 dDocent_Contig_8826 50 . T A 882.972 . AB=0.588235;ABP=6.45911;AC=3;AF=0.5;AN=6;AO=30;CIGAR=1X2M1X;DP=51;DPB=51;DPRA=0;EPP=68.1545;EPPR=48.6112;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=0.952381;PAO=0;PQA=0;PQR=0;PRO=0;QA=1196;QR=819;RO=21;RPL=30;RPP=68.1545;RPPR=48.6112;RPR=0;RUN=1;SAF=30;SAP=68.1545;SAR=0;SRF=21;SRP=48.6112;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|1:31:11,20:11:425:20:803:-63.2554,0,-29.2687 0|1:8:1,7:1:40:7:274:-22.6168,0,-1.58744 0|1:12:9,3:9:354:3:119:-7.48265,0,-28.6082 dDocent_Contig_8827 7 . T A 53.3177 . AB=0.130435;ABP=57.5803;AC=1;AF=0.166667;AN=6;AO=6;CIGAR=1X;DP=69;DPB=69;DPRA=4;EPP=16.0391;EPPR=139.813;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=226;QR=2402;RO=63;RPL=0;RPP=16.0391;RPPR=139.813;RPR=6;RUN=1;SAF=6;SAP=16.0391;SAR=0;SRF=63;SRP=139.813;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:46:40,6:40:1517:6:226:-6.85391,0,-122.951 0/0:1:1,0:1:39:0:0:0,-0.30103,-3.89656 0/0:22:22,0:22:846:0:0:0,-6.62266,-76.4612 dDocent_Contig_8829 18 . T C 393.155 . AB=0.15942;ABP=72.5289;AC=3;AF=0.5;AN=6;AO=11;CIGAR=1X1M1X5M;DP=84;DPB=84;DPRA=0;EPP=26.8965;EPPR=122.441;GTI=0;LEN=1;MEANALT=2;MQM=58.7273;MQMR=60;NS=3;NUMALT=2;ODDS=0;PAIRED=0.909091;PAIREDR=0.981818;PAO=0;PQA=0;PQR=0;PRO=0;QA=446;QR=2107;RO=55;RPL=0;RPP=26.8965;RPPR=122.441;RPR=11;RUN=1;SAF=11;SAP=26.8965;SAR=0;SRF=55;SRP=122.441;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|1:53:34,12,7:34:1308:12,7:460,283:-27.503,0,-103.758,-14.3979,-84.0347,-119.678 0|1:15:12,3,0:12:449:3,0:120,0:-6.67245,0,-36.2388,-10.2848,-37.1419,-47.0323 0|1:16:9,3,4:9:350:3,4:117,163:-10.6629,-3.76147,-31.6103,0,-19.1448,-27.5581 dDocent_Contig_8830 21 . G T 297.72 . AB=0.229508;ABP=41.7764;AC=2;AF=0.333333;AN=6;AO=14;CIGAR=1X;DP=63;DPB=63;DPRA=15.25;EPP=33.4109;EPPR=109.412;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=564;QR=1928;RO=49;RPL=0;RPP=33.4109;RPPR=109.412;RPR=14;RUN=1;SAF=14;SAP=33.4109;SAR=0;SRF=49;SRP=109.412;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:42:30,12:30:1179:12:483:-31.1778,0,-93.7397 0/0:2:2,0:2:67:0:0:0,-0.60206,-6.36069 0/1:19:17,2:17:682:2:81:-1.96616,0,-55.9897 dDocent_Contig_8831 23 . A G 1944.65 . AB=0.0512821;ABP=71.2168;AC=0;AF=0;AN=6;AO=2;CIGAR=1M1I1M1X;DP=76;DPB=98;DPRA=3.9;EPP=7.35324;EPPR=24.725;GTI=0;LEN=1;MEANALT=2;MQM=60;MQMR=60;NS=3;NUMALT=2;ODDS=6.93889e-18;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=81;QR=399;RO=10;RPL=0;RPP=7.35324;RPPR=24.725;RPR=2;RUN=1;SAF=2;SAP=7.35324;SAR=0;SRF=10;SRP=24.725;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|0:39:5,2,32:5:198:2,32:81,1221:-98.6234,-93.448,-109.143,0,-9.60695,-6.6557 0|0:27:5,0,21:5:201:0,21:0,793:-63.4562,-64.9613,-81.53,0,-16.5661,-10.2444 0|0:10:0,0,10:0:0:0,10:0,395:-35.9088,-35.9088,-35.9088,-3.0103,-3.0103,0 dDocent_Contig_8833 59 . A G 33.4646 . AB=0.1875;ABP=16.582;AC=2;AF=0.333333;AN=6;AO=3;CIGAR=1X;DP=19;DPB=19;DPRA=2.66667;EPP=9.52472;EPPR=37.7539;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=122;QR=617;RO=16;RPL=3;RPP=9.52472;RPPR=37.7539;RPR=0;RUN=1;SAF=3;SAP=9.52472;SAR=0;SRF=16;SRP=37.7539;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:7:6,1:6:223:1:40:-1.88847,0,-18.314 0/0:3:3,0:3:119:0:0:0,-0.90309,-11.095 0/1:9:7,2:7:275:2:82:-5.07041,0,-22.4062 dDocent_Contig_8834 106 . N G 65.5375 . AB=0;ABP=0;AC=2;AF=1;AN=2;AO=2;CIGAR=3X;DP=2;DPB=2;DPRA=0;EPP=7.35324;EPPR=0;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=0;NS=1;NUMALT=1;ODDS=5.99146;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=69;QR=0;RO=0;RPL=0;RPP=7.35324;RPPR=0;RPR=2;RUN=1;SAF=0;SAP=7.35324;SAR=2;SRF=0;SRP=0;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL .:.:.:.:.:.:.:. 1|1:2:0,2:0:0:2:69:-6.55266,-0.60206,0 .:.:.:.:.:.:.:. dDocent_Contig_8835 209 . N G 55.3092 . AB=0;ABP=0;AC=2;AF=1;AN=2;AO=2;CIGAR=1X;DP=2;DPB=2;DPRA=0;EPP=3.0103;EPPR=0;GTI=0;LEN=1;MEANALT=1;MQM=31.5;MQMR=0;NS=1;NUMALT=1;ODDS=5.99146;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=82;QR=0;RO=0;RPL=2;RPP=7.35324;RPPR=0;RPR=0;RUN=1;SAF=1;SAP=3.0103;SAR=1;SRF=0;SRP=0;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 1/1:2:0,2:0:0:2:82:-5.52984,-0.60206,0 ./.:.:.:.:.:.:.:. ./.:.:.:.:.:.:.:. dDocent_Contig_8836 24 . T C 322.909 . AB=0.52381;ABP=3.1137;AC=1;AF=0.166667;AN=6;AO=11;CIGAR=1X;DP=35;DPB=35;DPRA=3;EPP=26.8965;EPPR=55.1256;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=442;QR=971;RO=24;RPL=0;RPP=26.8965;RPPR=55.1256;RPR=11;RUN=1;SAF=11;SAP=26.8965;SAR=0;SRF=24;SRP=55.1256;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:21:10,11:10:402:11:442:-33.8137,0,-30.2182 0/0:4:4,0:4:163:0:0:0,-1.20412,-15.0584 0/0:10:10,0:10:406:0:0:0,-3.0103,-36.9004 dDocent_Contig_8837 23 . A G 87.3539 . AB=0.181818;ABP=12.6832;AC=0;AF=0;AN=6;AO=2;CIGAR=5M1X2M2X2M;DP=20;DPB=21.4167;DPRA=1.83333;EPP=7.35324;EPPR=31.2394;GTI=0;LEN=1;MEANALT=2;MQM=55;MQMR=60;NS=3;NUMALT=3;ODDS=0;PAIRED=0;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=80;QR=518;RO=13;RPL=0;RPP=7.35324;RPPR=31.2394;RPR=2;RUN=1;SAF=2;SAP=7.35324;SAR=0;SRF=13;SRP=31.2394;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|0:11:6,2,3,0:6:239:2,3,0:80,109,0:-7.07163,-2.28997,-21.3924,0,-13.1069,-18.7776,-8.87781,-21.9945,-19.6807,-28.5703 0|0:3:1,0,0,2:1:40:0,0,2:0,0,64:-5.17415,-5.47518,-8.79683,-5.47518,-8.79683,-8.79683,0,-3.69465,-3.69465,-3.09259 0|0:6:6,0,0,0:6:239:0,0,0:0,0,0:0,-1.80618,-21.8852,-1.80618,-21.8852,-21.8852,-1.80618,-21.8852,-21.8852,-21.8852 dDocent_Contig_8839 16 . C A 98.683 . AB=0.227273;ABP=17.2236;AC=1;AF=0.166667;AN=6;AO=7;CIGAR=1X;DP=51;DPB=51;DPRA=12.25;EPP=18.2106;EPPR=98.5551;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=276;QR=1729;RO=44;RPL=0;RPP=18.2106;RPPR=98.5551;RPR=7;RUN=1;SAF=7;SAP=18.2106;SAR=0;SRF=44;SRP=98.5551;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:22:17,5:17:658:5:196:-11.3904,0,-52.9251 0/0:2:2,0:2:80:0:0:0,-0.60206,-7.59157 0/0:27:25,2:25:991:2:80:0,-0.536019,-81.8939 dDocent_Contig_8841 50 . G A 182.347 . AB=0.129032;ABP=40.0654;AC=0;AF=0;AN=6;AO=4;CIGAR=1X3M1X;DP=36;DPB=36;DPRA=0;EPP=11.6962;EPPR=50.7827;GTI=0;LEN=1;MEANALT=2.5;MQM=60;MQMR=60;NS=3;NUMALT=2;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=153;QR=817;RO=22;RPL=4;RPP=11.6962;RPPR=50.7827;RPR=0;RUN=1;SAF=4;SAP=11.6962;SAR=0;SRF=22;SRP=50.7827;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|0:14:8,1,4:8:296:1,4:39,162:-11.0597,-10.254,-34.1798,0,-21.1024,-23.1093 0|0:5:3,0,2:3:103:0,2:0,79:-5.99209,-6.89518,-15.2249,0,-8.7037,-8.10164 0|0:17:11,3,3:11:418:3,3:114,121:-6.67451,-0.649279,-34.0036,0,-24.9274,-33.3725 dDocent_Contig_8842 23 . T G 3744.37 . AB=0.791946;ABP=113.318;AC=3;AF=0.5;AN=6;AO=118;CIGAR=1X;DP=149;DPB=149;DPRA=0;EPP=259.244;EPPR=70.3259;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=4712;QR=1247;RO=31;RPL=0;RPP=259.244;RPPR=70.3259;RPR=118;RUN=1;SAF=118;SAP=259.244;SAR=0;SRF=31;SRP=70.3259;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:103:18,85:18:731:85:3385:-273.686,0,-35.1079 0/1:17:10,7:10:393:7:284:-20.8163,0,-30.6066 0/1:29:3,26:3:123:26:1043:-85.4324,0,-2.73492 dDocent_Contig_8845 13 . G A 1803.21 . AB=0.641304;ABP=18.9659;AC=3;AF=0.5;AN=6;AO=59;CIGAR=1X;DP=92;DPB=92;DPRA=0;EPP=131.127;EPPR=74.6689;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=6.93889e-18;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=2362;QR=1304;RO=33;RPL=0;RPP=131.127;RPPR=74.6689;RPR=59;RUN=1;SAF=59;SAP=131.127;SAR=0;SRF=33;SRP=74.6689;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:57:18,39:18:712:39:1560:-123.475,0,-47.2424 0/1:7:3,4:3:108:4:164:-13.0427,0,-7.96348 0/1:28:12,16:12:484:16:638:-49.3262,0,-35.4817 dDocent_Contig_8846 10 . A C 225.902 . AB=0.3125;ABP=12.7819;AC=2;AF=0.333333;AN=6;AO=11;CIGAR=1X;DP=54;DPB=54;DPRA=0;EPP=26.8965;EPPR=96.3836;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=430;QR=1684;RO=43;RPL=0;RPP=26.8965;RPPR=96.3836;RPR=11;RUN=1;SAF=11;SAP=26.8965;SAR=0;SRF=43;SRP=96.3836;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:25:19,6:19:749:6:239:-14.3567,0,-60.2077 0/0:22:21,1:21:817:1:41:0,-2.52809,-69.7553 0/1:7:3,4:3:118:4:150:-11.7564,0,-8.8953 dDocent_Contig_8848 14 . G A 62.9345 . AB=0.333333;ABP=5.18177;AC=1;AF=0.25;AN=4;AO=3;CIGAR=1X3M1X;DP=25;DPB=25;DPRA=0.5625;EPP=9.52472;EPPR=50.7827;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=2;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=118;QR=853;RO=22;RPL=0;RPP=9.52472;RPPR=50.7827;RPR=3;RUN=1;SAF=3;SAP=9.52472;SAR=0;SRF=22;SRP=50.7827;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|0:16:16,0:16:619:0:0:0,-4.81648,-56.0457 .:.:.:.:.:.:.:. 0|1:9:6,3:6:234:3:118:-8.29345,0,-18.7212 dDocent_Contig_8849 27 . T C 1502.78 . AB=0.12;ABP=34.3664;AC=0;AF=0;AN=6;AO=3;CIGAR=1X3M2X;DP=80;DPB=80;DPRA=12.5;EPP=9.52472;EPPR=39.9253;GTI=0;LEN=1;MEANALT=4;MQM=60;MQMR=60;NS=3;NUMALT=3;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=116;QR=657;RO=17;RPL=0;RPP=9.52472;RPPR=39.9253;RPR=3;RUN=1;SAF=3;SAP=9.52472;SAR=0;SRF=17;SRP=39.9253;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|0:53:8,0,9,36:8:305:0,9,36:0,349,1420:-118.072,-120.48,-145.498,-91.8075,-116.825,-114.116,-3.66001,-28.6772,0,-17.8401 0|0:2:0,0,0,2:0:0:0,0,2:0,0,72:-6.83432,-6.83432,-6.83432,-6.83432,-6.83432,-6.83432,-0.60206,-0.60206,-0.60206,0 0|0:25:9,3,2,10:9:352:3,2,10:116,79,385:-28.8938,-22.0749,-50.1148,-25.101,-44.5163,-53.4423,0,-19.4146,-22.4403,-25.9316 dDocent_Contig_8851 1 . N G 100.757 . AB=0;ABP=0;AC=2;AF=1;AN=2;AO=3;CIGAR=1X;DP=3;DPB=3;DPRA=0;EPP=9.52472;EPPR=0;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=0;NS=1;NUMALT=1;ODDS=6.68461;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=108;QR=0;RO=0;RPL=0;RPP=9.52472;RPPR=0;RPR=3;RUN=1;SAF=0;SAP=9.52472;SAR=3;SRF=0;SRP=0;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 1/1:3:0,3:0:0:3:108:-10.0752,-0.90309,0 ./.:.:.:.:.:.:.:. ./.:.:.:.:.:.:.:. dDocent_Contig_8852 64 . A G 316.885 . AB=0.416667;ABP=4.45795;AC=4;AF=0.666667;AN=6;AO=12;CIGAR=1X;DP=26;DPB=26;DPRA=0;EPP=29.068;EPPR=33.4109;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=452;QR=546;RO=14;RPL=12;RPP=29.068;RPPR=33.4109;RPR=0;RUN=1;SAF=12;SAP=29.068;SAR=0;SRF=14;SRP=33.4109;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:8:7,1:7:278:1:38:-1.38903,0,-22.9827 1/1:2:0,2:0:0:2:81:-7.68573,-0.60206,0 0/1:16:7,9:7:268:9:333:-25.4912,0,-19.6671 dDocent_Contig_8853 12 . G A 1240.44 . AB=0.672131;ABP=18.709;AC=3;AF=0.5;AN=6;AO=41;CIGAR=1X;DP=61;DPB=61;DPRA=0;EPP=92.0407;EPPR=46.4397;GTI=0;LEN=1;MEANALT=1;MQM=58.8293;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=1649;QR=761;RO=20;RPL=0;RPP=92.0407;RPPR=46.4397;RPR=41;RUN=1;SAF=41;SAP=92.0407;SAR=0;SRF=20;SRP=46.4397;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:36:10,26:10:370:26:1041:-83.0883,0,-22.801 0/1:6:2,4:2:73:4:163:-13.2522,0,-5.12389 0/1:19:8,11:8:318:11:445:-33.2258,0,-23.2656 dDocent_Contig_8855 13 . C A 247.697 . AB=0.0869565;ABP=37.093;AC=1;AF=0.166667;AN=6;AO=2;CIGAR=2X;DP=185;DPB=185;DPRA=0;EPP=7.35324;EPPR=343.931;GTI=0;LEN=1;MEANALT=2;MQM=60;MQMR=60;NS=3;NUMALT=3;ODDS=1.38778e-17;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=79;QR=6240;RO=157;RPL=0;RPP=7.35324;RPPR=343.931;RPR=2;RUN=1;SAF=2;SAP=7.35324;SAR=0;SRF=157;SRP=343.931;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|0:101:85,0,0,16:85:3364:0,0,16:0,0,626:-26.2628,-51.8504,-328.695,-51.8504,-328.695,-328.695,0,-277.236,-277.236,-272.419 0|0:23:19,0,2,2:19:757:0,2,2:0,79,81:-0.964552,-6.68412,-69.0189,-0.18849,-62.5186,-61.9166,0,-62.3391,-55.8388,-61.737 0|1:61:53,5,0,3:53:2119:5,0,3:203,0,123:-0.785342,0,-173.023,-16.7399,-174.528,-191.271,-6.58621,-164.376,-181.119,-180.216 dDocent_Contig_8858 144 . T C 86.8204 . AB=0.181818;ABP=32.0291;AC=3;AF=0.5;AN=6;AO=6;CIGAR=1X;DP=33;DPB=33;DPRA=0;EPP=16.0391;EPPR=61.6401;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=0;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=234;QR=1019;RO=27;RPL=0;RPP=16.0391;RPPR=61.6401;RPR=6;RUN=1;SAF=0;SAP=16.0391;SAR=6;SRF=0;SRP=61.6401;SRR=27;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:13:11,2:11:412:2:72:-2.92093,0,-33.5124 0/1:13:12,1:12:451:1:40:-0.0822893,0,-37.0203 0/1:7:4,3:4:156:3:122:-9.26528,0,-12.3101 dDocent_Contig_8859 8 . A C 928.187 . AB=0.622642;ABP=9.93443;AC=3;AF=0.5;AN=6;AO=33;CIGAR=1X;DP=53;DPB=53;DPRA=0;EPP=74.6689;EPPR=46.4397;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=1255;QR=776;RO=20;RPL=0;RPP=74.6689;RPPR=46.4397;RPR=33;RUN=1;SAF=33;SAP=74.6689;SAR=0;SRF=20;SRP=46.4397;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:36:14,22:14:542:22:836:-64.7238,0,-38.2889 0/1:7:1,6:1:39:6:224:-18.4122,0,-1.78935 0/1:10:5,5:5:195:5:195:-14.9139,0,-14.9139 dDocent_Contig_8860 7 . T C 131.804 . AB=0.352941;ABP=6.20364;AC=2;AF=0.333333;AN=6;AO=7;CIGAR=1X;DP=40;DPB=40;DPRA=0;EPP=18.2106;EPPR=74.6689;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=273;QR=1266;RO=33;RPL=0;RPP=18.2106;RPPR=74.6689;RPR=7;RUN=1;SAF=7;SAP=18.2106;SAR=0;SRF=33;SRP=74.6689;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:23:22,1:22:841:1:39:0,-3.02713,-72.1128 0/1:5:3,2:3:115:2:78:-5.89832,0,-9.21974 0/1:12:8,4:8:310:4:156:-10.8049,0,-24.6513 dDocent_Contig_8861 112 . G T 205.947 . AB=0.285714;ABP=16.9698;AC=1;AF=0.166667;AN=6;AO=11;CIGAR=1X;DP=60;DPB=60;DPRA=3.25;EPP=26.8965;EPPR=109.412;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=395;QR=1715;RO=49;RPL=0;RPP=26.8965;RPPR=109.412;RPR=11;RUN=1;SAF=0;SAP=26.8965;SAR=11;SRF=0;SRP=109.412;SRR=49;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:35:25,10:25:867:10:359:-22.1176,0,-67.8076 0/0:8:8,0:8:281:0:0:0,-2.40824,-25.6304 0/0:17:16,1:16:567:1:36:0,-1.51923,-47.7632 dDocent_Contig_8862 32 . G A 242.695 . AB=0.322581;ABP=11.486;AC=2;AF=0.333333;AN=6;AO=10;CIGAR=1X;DP=32;DPB=32;DPRA=15.5;EPP=24.725;EPPR=50.7827;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=1.73472e-18;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=404;QR=882;RO=22;RPL=0;RPP=24.725;RPPR=50.7827;RPR=10;RUN=1;SAF=10;SAP=24.725;SAR=0;SRF=22;SRP=50.7827;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:20:14,6:14:561:6:241:-16.0446,0,-44.8109 0/0:1:1,0:1:41:0:0:0,-0.30103,-4.09457 0/1:11:7,4:7:280:4:163:-11.7471,0,-22.2586 dDocent_Contig_8863 202 . G A 230.253 . AB=0.333333;ABP=11.6962;AC=2;AF=0.333333;AN=6;AO=12;CIGAR=1X;DP=37;DPB=37;DPRA=18;EPP=21.1059;EPPR=57.2971;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=0.916667;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=408;QR=895;RO=25;RPL=12;RPP=29.068;RPPR=57.2971;RPR=0;RUN=1;SAF=1;SAP=21.1059;SAR=11;SRF=0;SRP=57.2971;SRR=25;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:16:13,3:13:463:3:101:-4.60689,0,-37.1897 0/0:1:1,0:1:37:0:0:0,-0.30103,-3.69783 0/1:20:11,9:11:395:9:307:-21.9402,0,-29.8693 dDocent_Contig_8865 98 . N C 359.131 . AB=0;ABP=0;AC=4;AF=1;AN=4;AO=11;CIGAR=4X;DP=11;DPB=11;DPRA=0;EPP=26.8965;EPPR=0;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=0;NS=2;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=388;QR=0;RO=0;RPL=11;RPP=26.8965;RPPR=0;RPR=0;RUN=1;SAF=11;SAP=26.8965;SAR=0;SRF=0;SRP=0;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 1|1:5:0,5:0:0:5:182:-16.7352,-1.50515,0 .:.:.:.:.:.:.:. 1|1:6:0,6:0:0:6:206:-18.8768,-1.80618,0 dDocent_Contig_8866 9 . T C 1557.24 . AB=0.338028;ABP=51.5473;AC=3;AF=0.5;AN=6;AO=72;CIGAR=1X3M;DP=213;DPB=213;DPRA=0;EPP=159.356;EPPR=209.3;GTI=0;LEN=1;MEANALT=3.66667;MQM=48.5556;MQMR=52.8947;NS=3;NUMALT=3;ODDS=2.77556e-17;PAIRED=0.694444;PAIREDR=0.768421;PAO=0;PQA=0;PQR=0;PRO=0;QA=2413;QR=3645;RO=95;RPL=0;RPP=159.356;RPPR=209.3;RPR=72;RUN=1;SAF=72;SAP=159.356;SAR=0;SRF=95;SRP=209.3;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|1:122:53,5,44,17:53:2018:5,44,17:199,1396,667:-91.5652,-91.1269,-241.537,0,-135.524,-138.668,-68.5015,-204.023,-112.903,-215.294 0|1:19:13,3,3,0:13:504:3,3,0:116,117,0:-5.7059,-0.092979,-30.6936,0,-21.9629,-30.6033,-9.61929,-31.5967,-31.5064,-41.1352 0|1:72:29,11,25,6:29:1123:11,25,6:434,900,245:-63.8725,-36.8931,-123.039,0,-53.7532,-81.9313,-60.7592,-114.502,-77.6141,-148.396 dDocent_Contig_8867 21 . G A 357.841 . AB=0.6;ABP=3.44459;AC=1;AF=0.166667;AN=6;AO=3;CIGAR=1X1M1X4M;DP=35;DPB=33.1429;DPRA=0;EPP=9.52472;EPPR=37.7539;GTI=0;LEN=1;MEANALT=2;MQM=60;MQMR=60;NS=3;NUMALT=2;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=121;QR=629;RO=16;RPL=0;RPP=9.52472;RPPR=37.7539;RPR=3;RUN=1;SAF=3;SAP=9.52472;SAR=0;SRF=16;SRP=37.7539;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|0:12:7,0,4:7:271:0,4:0,161:-9.46491,-11.5721,-33.8614,0,-22.3637,-21.1595 0|0:18:8,0,9:8:318:0,9:0,349:-22.0201,-24.4283,-50.6415,0,-26.2976,-23.5883 0|1:5:1,3,0:1:40:3,0:121,0:-9.77424,0,-2.45783,-10.0753,-3.36092,-13.3764 dDocent_Contig_8868 63 . G C 209.92 . AB=0.391304;ABP=5.3706;AC=2;AF=0.333333;AN=6;AO=9;CIGAR=1X;DP=31;DPB=31;DPRA=1.4375;EPP=22.5536;EPPR=50.7827;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=1.73472e-18;PAIRED=1;PAIREDR=0.909091;PAO=0;PQA=0;PQR=0;PRO=0;QA=341;QR=832;RO=22;RPL=9;RPP=22.5536;RPPR=50.7827;RPR=0;RUN=1;SAF=9;SAP=22.5536;SAR=0;SRF=22;SRP=50.7827;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:20:12,8:12:457:8:304:-21.6975,0,-35.4588 0/0:8:8,0:8:301:0:0:0,-2.40824,-27.447 0/1:3:2,1:2:74:1:37:-2.79474,0,-6.12279 dDocent_Contig_8870 9 . T C 14913.1 . AB=0.238506;ABP=209.7;AC=2;AF=0.333333;AN=6;AO=96;CIGAR=1X1M1X;DP=518;DPB=518;DPRA=0;EPP=211.472;EPPR=52.9542;GTI=0;LEN=1;MEANALT=3.66667;MQM=60;MQMR=60;NS=3;NUMALT=2;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=3776;QR=910;RO=23;RPL=0;RPP=211.472;RPPR=52.9542;RPR=96;RUN=1;SAF=96;SAP=211.472;SAR=0;SRF=23;SRP=52.9542;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 1|0:281:11,71,196:11:435:71,196:2790,7819:-825.119,-598.95,-613.376,-193.686,0,-170.484 1|0:67:6,12,49:6:235:12,49:476,1972:-180.517,-143.14,-158.85,-19.8657,0,-24.4367 0|0:170:6,13,144:6:240:13,144:510,5768:-489.197,-449.062,-464.919,-23.575,-1.40499,0 dDocent_Contig_8871 22 . G A 294.453 . AB=0.288889;ABP=20.4303;AC=3;AF=0.5;AN=6;AO=13;CIGAR=1X;DP=45;DPB=45;DPRA=0;EPP=31.2394;EPPR=72.4974;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=526;QR=1285;RO=32;RPL=0;RPP=31.2394;RPPR=72.4974;RPR=13;RUN=1;SAF=13;SAP=31.2394;SAR=0;SRF=32;SRP=72.4974;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:28:18,10:18:726:10:404:-28.2914,0,-57.2372 0/1:14:12,2:12:477:2:81:-3.47131,0,-39.0631 0/1:3:2,1:2:82:1:41:-3.19148,0,-6.87659 dDocent_Contig_8873 109 . C T 167.235 . AB=0.20339;ABP=48.096;AC=2;AF=0.333333;AN=6;AO=12;CIGAR=1X;DP=62;DPB=62;DPRA=9.83333;EPP=29.068;EPPR=111.584;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=399;QR=1703;RO=50;RPL=0;RPP=29.068;RPPR=111.584;RPR=12;RUN=1;SAF=0;SAP=29.068;SAR=12;SRF=0;SRP=111.584;SRR=50;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:40:36,4:36:1231:4:133:-0.257439,0,-99.0518 0/0:3:3,0:3:101:0:0:0,-0.90309,-9.42377 0/1:19:11,8:11:371:8:266:-18.5446,0,-27.9964 dDocent_Contig_8874 25 . T A 3096.74 . AB=0.639752;ABP=30.3223;AC=3;AF=0.5;AN=6;AO=103;CIGAR=1X;DP=161;DPB=161;DPRA=0;EPP=226.672;EPPR=128.956;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=4032;QR=2287;RO=58;RPL=0;RPP=226.672;RPPR=128.956;RPR=103;RUN=1;SAF=103;SAP=226.672;SAR=0;SRF=58;SRP=128.956;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:111:36,75:36:1431:75:2931:-230.477,0,-95.6312 0/1:17:4,13:4:160:13:496:-39.8645,0,-9.66592 0/1:33:18,15:18:696:15:605:-44.8551,0,-53.0259 dDocent_Contig_8876 116 . T C 279.766 . AB=0.451613;ABP=3.64073;AC=3;AF=0.5;AN=6;AO=14;CIGAR=1M1I3M1X;DP=31;DPB=33.8;DPRA=0;EPP=33.4109;EPPR=39.9253;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=0;PAIREDR=0.941176;PAO=0;PQA=0;PQR=0;PRO=0;QA=465;QR=592;RO=17;RPL=0;RPP=33.4109;RPPR=39.9253;RPR=14;RUN=1;SAF=0;SAP=33.4109;SAR=14;SRF=0;SRP=39.9253;SRR=17;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|1:8:4,4:4:139:4:134:-9.98305,0,-10.4444 0|1:14:8,6:8:278:6:202:-14.2963,0,-21.1436 0|1:9:5,4:5:175:4:129:-9.22013,0,-13.3844 dDocent_Contig_8877 31 . T G 117.117 . AB=0.115385;ABP=136.639;AC=1;AF=0.166667;AN=6;AO=12;CIGAR=1X;DP=138;DPB=138;DPRA=6.11765;EPP=29.068;EPPR=276.616;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=491;QR=5109;RO=126;RPL=0;RPP=29.068;RPPR=276.616;RPR=12;RUN=1;SAF=12;SAP=29.068;SAR=0;SRF=126;SRP=276.616;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:104:92,12:92:3724:12:491:-13.2338,0,-303.848 0/0:1:1,0:1:40:0:0:0,-0.30103,-3.99568 0/0:33:33,0:33:1345:0:0:0,-9.93399,-121.303 dDocent_Contig_8879 143 . A G 68.6378 . AB=0.333333;ABP=5.18177;AC=1;AF=0.166667;AN=6;AO=3;CIGAR=1X;DP=17;DPB=17;DPRA=2.25;EPP=9.52472;EPPR=33.4109;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=119;QR=558;RO=14;RPL=0;RPP=9.52472;RPPR=33.4109;RPR=3;RUN=1;SAF=0;SAP=9.52472;SAR=3;SRF=0;SRP=33.4109;SRR=14;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:9:6,3:6:235:3:119:-8.38591,0,-18.8089 0/0:7:7,0:7:282:0:0:0,-2.10721,-25.7528 0/0:1:1,0:1:41:0:0:0,-0.30103,-4.09457 dDocent_Contig_8881 73 . T C 570.619 . AB=0.477273;ABP=3.20771;AC=2;AF=0.5;AN=4;AO=21;CIGAR=1X5M;DP=52;DPB=53.3333;DPRA=0;EPP=48.6112;EPPR=61.6401;GTI=0;LEN=1;MEANALT=2;MQM=60;MQMR=60;NS=2;NUMALT=2;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=790;QR=976;RO=27;RPL=21;RPP=48.6112;RPPR=61.6401;RPR=0;RUN=1;SAF=21;SAP=48.6112;SAR=0;SRF=27;SRP=61.6401;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|1:44:20,3,21:20:722:3,21:120,790:-58.6848,-54.8287,-112.839,0,-49.0082,-52.5653 .:.:.:.:.:.:.:. 0|1:8:7,1,0:7:254:1,0:40,0:-1.58318,0,-20.8025,-3.69039,-21.1036,-24.3994 dDocent_Contig_8884 11 . C T 3853.23 . AB=0.0520833;ABP=170.304;AC=1;AF=0.166667;AN=6;AO=5;CIGAR=3X1M;DP=168;DPB=168;DPRA=3.69231;EPP=13.8677;EPPR=48.6112;GTI=0;LEN=1;MEANALT=4;MQM=60;MQMR=60;NS=3;NUMALT=5;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=201;QR=842;RO=21;RPL=0;RPP=13.8677;RPPR=48.6112;RPR=5;RUN=1;SAF=5;SAP=13.8677;SAR=0;SRF=21;SRP=48.6112;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|0:96:15,68,0,4,5,4:15:599:68,0,4,5,4:2676,0,163,201,162:-215.574,0,-28.8614,-220.089,-49.3315,-269.424,-206.641,-35.8832,-255.977,-254.772,-203.525,-32.7672,-252.86,-239.412,-251.355,-206.731,-35.9726,-256.066,-242.618,-239.501,-254.862 0|0:26:0,25,0,1,0,0:0:0:25,0,1,0,0:1001,0,36,0,0:-90.0266,-7.52575,0,-90.0266,-7.52575,-90.0266,-87.0907,-4.22851,-87.0907,-86.7897,-90.0266,-7.52575,-90.0266,-87.0907,-90.0266,-90.0266,-7.52575,-90.0266,-87.0907,-90.0266,-90.0266 0|1:46:6,23,3,9,0,5:6:243:23,3,9,0,5:912,117,364,0,173:-83.2455,-9.97801,-23.0971,-75.4348,-20.4038,-94.5711,-55.0364,0,-65.4597,-72.3674,-85.0517,-30.0208,-95.4742,-75.0767,-105.091,-71.0046,-15.9794,-81.4268,-61.0301,-91.0431,-89.5379 dDocent_Contig_8885 9 . T G 2185.43 . AB=0.735294;ABP=52.06;AC=3;AF=0.5;AN=6;AO=75;CIGAR=1X;DP=102;DPB=102;DPRA=0;EPP=165.871;EPPR=61.6401;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=2808;QR=997;RO=27;RPL=0;RPP=165.871;RPPR=61.6401;RPR=75;RUN=1;SAF=75;SAP=165.871;SAR=0;SRF=27;SRP=61.6401;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:66:11,55:11:400:55:2058:-165.585,0,-16.4679 0/1:6:1,5:1:27:5:187:-15.3852,0,-0.893603 0/1:30:15,15:15:570:15:563:-41.9775,0,-42.6077 dDocent_Contig_8886 34 . T A 175.686 . AB=0.466667;ABP=3.15506;AC=2;AF=0.333333;AN=6;AO=7;CIGAR=1X;DP=28;DPB=28;DPRA=0.576923;EPP=18.2106;EPPR=48.6112;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=56.381;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=0.904762;PAO=0;PQA=0;PQR=0;PRO=0;QA=276;QR=810;RO=21;RPL=0;RPP=18.2106;RPPR=48.6112;RPR=7;RUN=1;SAF=7;SAP=18.2106;SAR=0;SRF=21;SRP=48.6112;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:13:13,0:13:509:0:0:0,-3.91339,-46.1583 0/1:5:3,2:3:102:2:80:-6.08664,0,-5.36887 0/1:10:5,5:5:199:5:196:-15.0047,0,-15.2784 dDocent_Contig_8887 27 . G A 251.317 . AB=0.240741;ABP=34.5369;AC=3;AF=0.5;AN=6;AO=13;CIGAR=1X;DP=54;DPB=54;DPRA=0;EPP=31.2394;EPPR=92.0407;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=509;QR=1628;RO=41;RPL=0;RPP=31.2394;RPPR=92.0407;RPR=13;RUN=1;SAF=13;SAP=31.2394;SAR=0;SRF=41;SRP=92.0407;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:32:26,6:26:1025:6:241:-12.4333,0,-82.9092 0/1:5:3,2:3:121:2:70:-5.14218,0,-9.77505 0/1:17:12,5:12:482:5:198:-13.079,0,-38.6116 dDocent_Contig_8888 8 . A G 117.174 . AB=0.230769;ABP=19.3799;AC=1;AF=0.166667;AN=6;AO=6;CIGAR=1X;DP=33;DPB=33;DPRA=7.42857;EPP=16.0391;EPPR=61.6401;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=1.73472e-18;PAIRED=0;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=230;QR=1031;RO=27;RPL=0;RPP=16.0391;RPPR=61.6401;RPR=6;RUN=1;SAF=6;SAP=16.0391;SAR=0;SRF=27;SRP=61.6401;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:26:20,6:20:758:6:230:-13.2396,0,-60.7177 0/0:6:6,0:6:234:0:0:0,-1.80618,-21.4311 0/0:1:1,0:1:39:0:0:0,-0.30103,-3.89656 dDocent_Contig_8890 7 . T C 1373.91 . AB=0.46789;ABP=3.98647;AC=3;AF=0.5;AN=6;AO=51;CIGAR=1X;DP=109;DPB=109;DPRA=0;EPP=113.755;EPPR=128.956;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=0.982759;PAO=0;PQA=0;PQR=0;PRO=0;QA=1939;QR=2219;RO=58;RPL=0;RPP=113.755;RPPR=128.956;RPR=51;RUN=1;SAF=51;SAP=113.755;SAR=0;SRF=58;SRP=128.956;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:60:30,30:30:1145:30:1143:-85.108,0,-85.2894 0/1:18:2,16:2:77:16:603:-49.1875,0,-1.8906 0/1:31:26,5:26:997:5:193:-8.40943,0,-80.7092 dDocent_Contig_8891 108 . C T 148.249 . AB=0.285714;ABP=16.9698;AC=2;AF=0.333333;AN=6;AO=10;CIGAR=1X;DP=39;DPB=39;DPRA=4.375;EPP=24.725;EPPR=65.983;GTI=0;LEN=1;MEANALT=1;MQM=59;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=0;PAIREDR=0.965517;PAO=0;PQA=0;PQR=0;PRO=0;QA=314;QR=975;RO=29;RPL=0;RPP=24.725;RPPR=65.983;RPR=10;RUN=1;SAF=0;SAP=24.725;SAR=10;SRF=0;SRP=65.983;SRR=29;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:21:15,6:15:504:6:179:-10.0795,0,-39.3603 0/1:14:10,4:10:335:4:135:-8.26815,0,-26.2615 0/0:4:4,0:4:136:0:0:0,-1.20412,-12.576 dDocent_Contig_8892 26 . A G 317.651 . AB=0.165354;ABP=126.545;AC=3;AF=0.5;AN=6;AO=21;CIGAR=1X;DP=127;DPB=127;DPRA=0;EPP=48.6112;EPPR=231.015;GTI=0;LEN=1;MEANALT=1.33333;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=824;QR=4190;RO=105;RPL=0;RPP=48.6112;RPPR=231.015;RPR=21;RUN=1;SAF=21;SAP=48.6112;SAR=0;SRF=105;SRP=231.015;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:74:59,14:59:2355:14:546:-27.3854,0,-190.025 0/1:13:10,3:10:391:3:123:-7.5514,0,-31.627 0/1:40:36,4:36:1444:4:155:-2.28145,0,-118.171 dDocent_Contig_8893 32 . G C 260.911 . AB=0.0555556;ABP=95.6598;AC=1;AF=0.166667;AN=6;AO=3;CIGAR=2X2M1X3M;DP=152;DPB=165.5;DPRA=0;EPP=9.52472;EPPR=276.616;GTI=0;LEN=1;MEANALT=2.5;MQM=60;MQMR=60;NS=3;NUMALT=3;ODDS=0;PAIRED=1;PAIREDR=0.944444;PAO=0;PQA=0;PQR=0;PRO=0;QA=112;QR=4867;RO=126;RPL=0;RPP=9.52472;RPPR=276.616;RPR=3;RUN=1;SAF=3;SAP=9.52472;SAR=0;SRF=126;SRP=276.616;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|0:98:82,0,16,0:82:3162:0,16,0:0,592,0:-24.1117,-48.7962,-308.447,0,-260.023,-255.206,-48.7962,-308.447,-260.023,-308.447 0|1:20:18,2,0,0:18:695:2,0,0:73,0,0:-0.909473,0,-56.862,-6.32801,-57.464,-63.4252,-6.32801,-57.464,-63.4252,-63.4252 0|0:34:26,1,2,4:26:1010:1,2,4:39,74,161:-5.4906,-10.1063,-92.8287,-7.25886,-87.0773,-89.6814,0,-79.8579,-77.0117,-81.8601 dDocent_Contig_8894 42 . G C 62.2422 . AB=0.210526;ABP=16.8392;AC=2;AF=0.333333;AN=6;AO=4;CIGAR=1X;DP=30;DPB=30;DPRA=0.863636;EPP=11.6962;EPPR=59.4686;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=163;QR=1033;RO=26;RPL=0;RPP=11.6962;RPPR=59.4686;RPR=4;RUN=1;SAF=4;SAP=11.6962;SAR=0;SRF=26;SRP=59.4686;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:7:5,2:5:197:2:82:-5.67247,0,-15.9981 0/1:12:10,2:10:395:2:81:-4.07337,0,-32.2918 0/0:11:11,0:11:441:0:0:0,-3.31133,-40.0459 dDocent_Contig_8895 12 . G T 97.2465 . AB=0.263158;ABP=12.2676;AC=2;AF=0.333333;AN=6;AO=5;CIGAR=1X;DP=53;DPB=53;DPRA=0.279412;EPP=13.8677;EPPR=107.241;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=202;QR=1891;RO=48;RPL=0;RPP=13.8677;RPPR=107.241;RPR=5;RUN=1;SAF=5;SAP=13.8677;SAR=0;SRF=48;SRP=107.241;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:34:34,0:34:1341:0:0:0,-10.235,-120.948 0/1:6:3,3:3:107:3:122:-9.56631,0,-8.17222 0/1:13:11,2:11:443:2:80:-3.67819,0,-36.3123 dDocent_Contig_8896 19 . C T 192.526 . AB=0.272727;ABP=17.8158;AC=2;AF=0.5;AN=4;AO=9;CIGAR=1X;DP=33;DPB=33;DPRA=0;EPP=22.5536;EPPR=55.1256;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=2;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=357;QR=948;RO=24;RPL=0;RPP=22.5536;RPPR=55.1256;RPR=9;RUN=1;SAF=9;SAP=22.5536;SAR=0;SRF=24;SRP=55.1256;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:21:17,4:17:670:4:164:-8.82827,0,-54.3034 ./.:.:.:.:.:.:.:. 0/1:12:7,5:7:278:5:193:-14.1233,0,-21.7774 dDocent_Contig_8897 14 . A G 227.061 . AB=0.3;ABP=6.48466;AC=3;AF=0.5;AN=6;AO=3;CIGAR=1X4M;DP=51;DPB=51;DPRA=0;EPP=9.52472;EPPR=81.1833;GTI=0;LEN=1;MEANALT=2;MQM=38;MQMR=60;NS=3;NUMALT=2;ODDS=0;PAIRED=0;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=108;QR=1404;RO=36;RPL=0;RPP=9.52472;RPPR=81.1833;RPR=3;RUN=1;SAF=3;SAP=9.52472;SAR=0;SRF=36;SRP=81.1833;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|1:29:23,6,0:23:900:6,0:230,0:-12.3058,0,-72.5849,-19.2295,-74.3911,-93.2363 0|1:10:4,3,3:4:155:3,3:118,108:-8.53069,0,-11.8594,-1.57536,-4.59658,-13.4027 0|1:12:9,3,0:9:349:3,0:118,0:-7.38866,0,-28.155,-10.0979,-29.0581,-38.7645 dDocent_Contig_8898 13 . G C 539.76 . AB=0.328358;ABP=20.1552;AC=3;AF=0.5;AN=6;AO=22;CIGAR=1X;DP=67;DPB=67;DPRA=0;EPP=50.7827;EPPR=100.727;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=873;QR=1817;RO=45;RPL=0;RPP=50.7827;RPPR=100.727;RPR=22;RUN=1;SAF=22;SAP=50.7827;SAR=0;SRF=45;SRP=100.727;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:36:23,13:23:926:13:513:-35.6744,0,-72.8076 0/1:8:6,2:6:244:2:78:-4.99506,0,-19.9306 0/1:23:16,7:16:647:7:282:-18.8293,0,-51.6402 dDocent_Contig_8899 139 . C T 70.2174 . AB=0.130435;ABP=30.2953;AC=3;AF=0.5;AN=6;AO=4;CIGAR=1X;DP=33;DPB=33;DPRA=1.33333;EPP=11.6962;EPPR=65.983;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=0;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=163;QR=1159;RO=29;RPL=0;RPP=11.6962;RPPR=65.983;RPR=4;RUN=1;SAF=0;SAP=11.6962;SAR=4;SRF=0;SRP=65.983;SRR=29;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:23:20,3:20:805:3:122:-4.4488,0,-65.844 1/1:1:0,1:0:0:1:41:-4.09457,-0.30103,0 0/0:9:9,0:9:354:0:0:0,-2.70927,-32.2185 dDocent_Contig_8900 18 . T C 535.706 . AB=0.247423;ABP=56.7598;AC=3;AF=0.5;AN=6;AO=24;CIGAR=1X;DP=97;DPB=97;DPRA=0;EPP=55.1256;EPPR=159.356;GTI=0;LEN=1;MEANALT=1.33333;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=970;QR=2858;RO=72;RPL=0;RPP=55.1256;RPPR=159.356;RPR=24;RUN=1;SAF=24;SAP=55.1256;SAR=0;SRF=72;SRP=159.356;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:75:58,16:58:2295:16:652:-36.3266,0,-184.02 0/1:14:8,6:8:322:6:237:-17.4892,0,-25.1334 0/1:8:6,2:6:241:2:81:-5.27749,0,-19.6569 dDocent_Contig_8902 8 . A C 526.204 . AB=0.328125;ABP=19.4321;AC=1;AF=0.25;AN=4;AO=22;CIGAR=1X;DP=86;DPB=86;DPRA=0;EPP=50.7827;EPPR=141.985;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=2;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=853;QR=2472;RO=64;RPL=0;RPP=50.7827;RPPR=141.985;RPR=22;RUN=1;SAF=22;SAP=50.7827;SAR=0;SRF=64;SRP=141.985;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:64:43,21:43:1664:21:814:-54.3193,0,-130.756 ./.:.:.:.:.:.:.:. 0/0:22:21,1:21:808:1:39:0,-2.7261,-69.149 dDocent_Contig_8903 8 . A T 353.296 . AB=0.25;ABP=9.52472;AC=1;AF=0.166667;AN=6;AO=3;CIGAR=1X1M1X3M3X;DP=31;DPB=31;DPRA=6;EPP=9.52472;EPPR=42.0968;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=2;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=117;QR=709;RO=18;RPL=0;RPP=9.52472;RPPR=42.0968;RPR=3;RUN=1;SAF=3;SAP=9.52472;SAR=0;SRF=18;SRP=42.0968;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|0:17:9,0,8:9:353:0,8:0,318:-23.8682,-26.5775,-55.6047,0,-29.4218,-27.0136 0|0:2:0,0,2:0:0:0,2:0,81:-7.68573,-7.68573,-7.68573,-0.60206,-0.60206,0 0|1:12:9,3,0:9:356:3,0:117,0:-7.29785,0,-28.7905,-10.0071,-29.6936,-39.3097 dDocent_Contig_8906 10 . A C 294.176 . AB=0.214286;ABP=12.937;AC=1;AF=0.166667;AN=6;AO=3;CIGAR=1X3M1X;DP=33;DPB=33;DPRA=0;EPP=9.52472;EPPR=44.2683;GTI=0;LEN=1;MEANALT=2;MQM=60;MQMR=60;NS=3;NUMALT=2;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=123;QR=761;RO=19;RPL=0;RPP=9.52472;RPPR=44.2683;RPR=3;RUN=1;SAF=3;SAP=9.52472;SAR=0;SRF=19;SRP=44.2683;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|0:19:12,0,7:12:480:0,7:0,286:-20.3952,-24.0076,-63.5424,0,-39.9398,-37.8325 0|0:9:6,1,2:6:241:1,2:41,81:-4.86969,-3.29014,-22.8455,0,-16.4666,-19.2498 1|0:5:1,2,2:1:40:2,2:82,79:-9.6751,-3.20054,-5.89521,-3.48297,0,-6.17269 dDocent_Contig_8907 9 . T C 55019.4 . AB=0.568496;ABP=100.284;AC=6;AF=1;AN=6;AO=1357;CIGAR=1X3M;DP=2387;DPB=2387;DPRA=0;EPP=2949.7;EPPR=298.331;GTI=0;LEN=1;MEANALT=11.3333;MQM=58.7406;MQMR=59.5368;NS=3;NUMALT=2;ODDS=2.22045e-16;PAIRED=0.936625;PAIREDR=0.933824;PAO=0;PQA=0;PQR=0;PRO=0;QA=52054;QR=5316;RO=136;RPL=0;RPP=2949.7;RPPR=298.331;RPR=1357;RUN=1;SAF=1357;SAP=2949.7;SAR=0;SRF=136;SRP=298.331;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 1|1:1221:66,381,662:66:2583:381,662:14885,25477:-2772.27,-1875.57,-1972.83,-704.59,0,-717.269 1|1:456:19,120,292:19:734:120,292:4684,11190:-1143.02,-857.475,-881.602,-231.016,0,-203.375 1|1:710:51,207,403:51:1999:207,403:8083,15387:-1592.17,-1090.87,-1192.85,-352.332,0,-395.314 dDocent_Contig_8908 111 . T C 294.587 . AB=0.283333;ABP=27.4756;AC=3;AF=0.5;AN=6;AO=17;CIGAR=1M1X;DP=60;DPB=60;DPRA=0;EPP=39.9253;EPPR=85.5263;GTI=0;LEN=1;MEANALT=1.66667;MQM=60;MQMR=60;NS=3;NUMALT=3;ODDS=0;PAIRED=0;PAIREDR=0.789474;PAO=0;PQA=0;PQR=0;PRO=0;QA=569;QR=1285;RO=38;RPL=0;RPP=39.9253;RPPR=85.5263;RPR=17;RUN=1;SAF=0;SAP=39.9253;SAR=17;SRF=0;SRP=85.5263;SRR=38;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|1:22:15,3,0,4:15:498:3,0,4:105,0,116:-4.68271,-0.629259,-40.0493,-9.19816,-40.9523,-49.4992,0,-31.7288,-40.275,-39.0708 0|1:21:16,0,0,5:16:543:0,0,5:0,0,175:-9.77206,-14.5885,-58.6168,-14.5885,-58.6168,-58.6168,0,-44.3756,-44.3756,-42.8705 0|1:17:7,0,2,8:7:244:0,2,8:0,70,278:-20.4938,-22.601,-42.4457,-16.9181,-36.763,-36.161,0,-19.8439,-14.1612,-17.4356 dDocent_Contig_8910 110 . G A 69.4316 . AB=0.384615;ABP=4.51363;AC=2;AF=0.333333;AN=6;AO=5;CIGAR=1X;DP=36;DPB=36;DPRA=0.282609;EPP=13.8677;EPPR=70.3259;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=151;QR=1048;RO=31;RPL=0;RPP=13.8677;RPPR=70.3259;RPR=5;RUN=1;SAF=0;SAP=13.8677;SAR=5;SRF=0;SRP=70.3259;SRR=31;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:23:23,0:23:775:0:0:0,-6.92369,-70.0601 0/1:6:5,1:5:169:1:34:-1.59273,0,-13.7369 0/1:7:3,4:3:104:4:117:-8.7138,0,-7.59588 dDocent_Contig_8911 11 . A G 145.699 . AB=0.2;ABP=34.2795;AC=2;AF=0.333333;AN=6;AO=8;CIGAR=1X;DP=57;DPB=57;DPRA=1.17647;EPP=20.3821;EPPR=109.412;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=326;QR=1968;RO=49;RPL=0;RPP=20.3821;RPPR=109.412;RPR=8;RUN=1;SAF=8;SAP=20.3821;SAR=0;SRF=49;SRP=109.412;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:24:18,6:18:734:6:244:-15.1141,0,-59.1585 0/0:17:17,0:17:682:0:0:0,-5.11751,-61.7107 0/1:16:14,2:14:552:2:82:-2.9632,0,-45.2003 dDocent_Contig_8912 64 . C T 302.17 . AB=0.25;ABP=18.2106;AC=2;AF=0.333334;AN=6;AO=7;CIGAR=10M1X14M;DP=56;DPB=55.88;DPRA=0;EPP=18.2106;EPPR=65.983;GTI=0;LEN=1;MEANALT=7;MQM=60;MQMR=60;NS=3;NUMALT=5;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=243;QR=1032;RO=29;RPL=7;RPP=18.2106;RPPR=65.983;RPR=0;RUN=1;SAF=7;SAP=18.2106;SAR=0;SRF=29;SRP=65.983;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|0:25:15,0,4,5,0,0:15:541:0,4,5,0,0:0,123,194,0,0:-11.488,-16.0034,-60.1761,-6.15056,-50.3196,-49.1155,0,-44.226,-34.3692,-42.7209,-16.0034,-60.1761,-50.3196,-44.226,-60.1761,-16.0034,-60.1761,-50.3196,-44.226,-60.1761,-60.1761 1|0:3:0,0,1,0,0,2:0:0:0,1,0,0,2:0,33,0,0,69:-8.61381,-8.61381,-8.61381,-5.9506,-5.9506,-5.64957,-8.61381,-8.61381,-5.9506,-8.61381,-8.61381,-8.61381,-5.9506,-8.61381,-8.61381,-2.9981,-2.9981,0,-2.9981,-2.9981,-2.39604 0|1:28:14,2,0,0,7,1:14:491:2,0,0,7,1:69,0,0,243,34:-15.583,-14.1849,-53.5688,-19.7974,-54.1709,-59.7779,-19.7974,-54.1709,-59.7779,-59.7779,0,-34.4085,-40.0168,-40.0168,-37.9096,-17.0367,-51.4123,-57.0195,-57.0195,-37.2578,-56.7184 dDocent_Contig_8913 31 . T C 273.883 . AB=0.25;ABP=9.52472;AC=3;AF=0.5;AN=6;AO=9;CIGAR=1X;DP=23;DPB=23;DPRA=1.8;EPP=22.5536;EPPR=33.4109;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=353;QR=548;RO=14;RPL=0;RPP=22.5536;RPPR=33.4109;RPR=9;RUN=1;SAF=9;SAP=22.5536;SAR=0;SRF=14;SRP=33.4109;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:12:9,3:9:352:3:121:-7.66763,0,-28.4259 1/1:6:0,6:0:0:6:232:-21.2435,-1.80618,0 0/0:5:5,0:5:196:0:0:0,-1.50515,-18.0139 dDocent_Contig_8914 27 . G A 251.956 . AB=0.133333;ABP=38.0434;AC=0;AF=0;AN=6;AO=4;CIGAR=2M14I2M1X;DP=40;DPB=49.2;DPRA=6;EPP=3.0103;EPPR=59.4686;GTI=0;LEN=1;MEANALT=2;MQM=5;MQMR=60;NS=3;NUMALT=2;ODDS=0;PAIRED=0;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=160;QR=1013;RO=26;RPL=0;RPP=11.6962;RPPR=59.4686;RPR=4;RUN=1;SAF=2;SAP=3.0103;SAR=2;SRF=26;SRP=59.4686;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|0:30:18,4,8:18:699:4,8:160,313:-20.5443,-25.4809,-81.7082,0,-57.1759,-55.3018 0|0:8:8,0,0:8:314:0,0:0,0:0,-2.40824,-28.6251,-2.40824,-28.6251,-28.6251 0|0:2:0,0,2:0:0:0,2:0,65:-6.17353,-6.17353,-6.17353,-0.60206,-0.60206,0 dDocent_Contig_8915 18 . A G 2407.43 . AB=0.373333;ABP=34.3664;AC=3;AF=0.5;AN=6;AO=84;CIGAR=2M1X7M;DP=225;DPB=205.8;DPRA=0;EPP=185.414;EPPR=233.186;GTI=0;LEN=1;MEANALT=3;MQM=60;MQMR=60;NS=3;NUMALT=3;ODDS=2.77556e-17;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=3354;QR=4201;RO=106;RPL=0;RPP=185.414;RPPR=233.186;RPR=84;RUN=1;SAF=84;SAP=185.414;SAR=0;SRF=106;SRP=233.186;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|1:164:78,20,62,4:78:3097:20,62,4:745,2478,164:-180.638,-143.156,-392.086,0,-194.003,-236.302,-190.581,-384.57,-241.429,-444.331 0|1:13:1,0,11,1:1:41:0,11,1:0,444,41:-36.2939,-36.595,-39.9795,0,-3.38408,-0.0727504,-33.2104,-36.595,-1.73718e-08,-36.2939 0|1:48:27,4,11,5:27:1063:4,11,5:159,432,200:-27.4033,-22.4391,-108.682,0,-74.356,-84.136,-19.0543,-93.411,-70.9719,-104.997 dDocent_Contig_8916 163 . A T 30.4255 . AB=0.142857;ABP=26.2761;AC=1;AF=0.166667;AN=6;AO=3;CIGAR=1X;DP=65;DPB=65;DPRA=0.954545;EPP=9.52472;EPPR=14.358;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=0;PAIREDR=0.354839;PAO=0;PQA=0;PQR=0;PRO=0;QA=120;QR=2481;RO=62;RPL=0;RPP=9.52472;RPPR=14.358;RPR=3;RUN=1;SAF=0;SAP=9.52472;SAR=3;SRF=0;SRP=137.642;SRR=62;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:26:26,0:26:1043:0:0:0,-7.82678,-94.1629 0/0:18:18,0:18:719:0:0:0,-5.41854,-65.0361 0/1:21:18,3:18:719:3:120:-4.86606,0,-58.7145 dDocent_Contig_8917 7 . T A 496.565 . AB=0.156627;ABP=88.0117;AC=1;AF=0.166667;AN=6;AO=13;CIGAR=1X2M1X3M1X;DP=83;DPB=83;DPRA=0;EPP=31.2394;EPPR=85.5263;GTI=0;LEN=1;MEANALT=3.33333;MQM=60;MQMR=60;NS=3;NUMALT=4;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=514;QR=1468;RO=38;RPL=0;RPP=31.2394;RPPR=85.5263;RPR=13;RUN=1;SAF=13;SAP=31.2394;SAR=0;SRF=38;SRP=85.5263;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|0:39:15,6,0,5,13:15:581:6,0,5,13:238,0,197,528:-39.0378,-23.9626,-69.8788,-43.5532,-71.685,-91.2772,-27.3491,-55.4793,-75.0715,-73.5663,0,-28.1308,-47.7247,-31.5179,-43.8113 0|0:10:4,2,0,2,2:4:152:2,0,2,2:79,0,80,81:-5.47752,-0.183153,-12.0351,-6.68164,-12.6372,-19.1389,-0.0914715,-6.04413,-12.5467,-11.9447,0,-5.95348,-12.4565,-5.86263,-11.8545 0|1:34:19,5,2,4,4:19:735:5,2,4,4:197,78,157,150:-10.4912,0,-58.87,-9.79872,-53.9632,-69.5701,-3.2969,-47.4619,-57.2592,-62.4671,-3.93072,-48.0922,-57.8892,-51.3882,-63.0969 dDocent_Contig_8919 135 . C T 66.6447 . AB=0.2;ABP=18.6449;AC=2;AF=0.333333;AN=6;AO=4;CIGAR=1X;DP=24;DPB=24;DPRA=2.5;EPP=11.6962;EPPR=46.4397;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=0;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=164;QR=665;RO=20;RPL=0;RPP=11.6962;RPPR=46.4397;RPR=4;RUN=1;SAF=0;SAP=11.6962;SAR=4;SRF=0;SRP=46.4397;SRR=20;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:11:8,3:8:267:3:123:-8.15346,0,-21.0445 0/0:4:4,0:4:135:0:0:0,-1.20412,-12.4833 0/1:9:8,1:8:263:1:41:-1.3853,0,-21.282 dDocent_Contig_8920 14 . G A 117.812 . AB=0;ABP=0;AC=2;AF=0.5;AN=4;AO=2;CIGAR=2X2M2X;DP=8;DPB=8;DPRA=0.333333;EPP=7.35324;EPPR=0;GTI=0;LEN=1;MEANALT=1;MQM=37;MQMR=0;NS=2;NUMALT=2;ODDS=0;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=74;QR=0;RO=0;RPL=0;RPP=7.35324;RPPR=0;RPR=2;RUN=1;SAF=2;SAP=7.35324;SAR=0;SRF=0;SRP=0;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|0:6:0,0,6:0:0:0,6:0,72:-5.02091,-5.02091,-5.02091,-1.80618,-1.80618,0 1|1:2:0,2,0:0:0:2,0:74,0:-6.45813,-0.60206,0,-6.45813,-0.60206,-6.45813 .:.:.:.:.:.:.:. dDocent_Contig_8921 12 . T C 572.065 . AB=0.459016;ABP=3.90025;AC=3;AF=0.5;AN=6;AO=28;CIGAR=1X;DP=61;DPB=61;DPRA=0;EPP=63.8115;EPPR=74.6689;GTI=0;LEN=1;MEANALT=1;MQM=37.4643;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=1126;QR=1317;RO=33;RPL=0;RPP=63.8115;RPPR=74.6689;RPR=28;RUN=1;SAF=28;SAP=63.8115;SAR=0;SRF=33;SRP=74.6689;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:30:14,16:14:547:16:647:-29.1582,0,-40.5381 0/1:13:8,5:8:321:5:198:-13.9719,0,-25.3442 0/1:18:11,7:11:449:7:281:-19.5992,0,-35.3473 dDocent_Contig_8922 73 . T C 239.504 . AB=0.220339;ABP=43.0905;AC=3;AF=0.5;AN=6;AO=14;CIGAR=1X;DP=88;DPB=88;DPRA=1.07143;EPP=33.4109;EPPR=163.699;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=473;QR=2521;RO=74;RPL=14;RPP=33.4109;RPPR=163.699;RPR=0;RUN=1;SAF=14;SAP=33.4109;SAR=0;SRF=74;SRP=163.699;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:59:46,13:46:1567:13:439:-22.0736,0,-123.561 1/1:1:0,1:0:0:1:34:-3.39891,-0.30103,0 0/0:28:28,0:28:954:0:0:0,-8.42884,-86.17 dDocent_Contig_8923 54 . A T 227.914 . AB=0.0540541;ABP=130.834;AC=0;AF=0;AN=4;AO=4;CIGAR=1X3M1X3M3X;DP=74;DPB=74;DPRA=0;EPP=11.6962;EPPR=126.784;GTI=0;LEN=1;MEANALT=2;MQM=60;MQMR=60;NS=2;NUMALT=2;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=160;QR=2249;RO=57;RPL=4;RPP=11.6962;RPPR=126.784;RPR=0;RUN=1;SAF=4;SAP=11.6962;SAR=0;SRF=57;SRP=126.784;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|0:49:42,2,5:42:1660:2,5:80,204:-4.1938,-10.2494,-146.238,0,-130.007,-135.092 .:.:.:.:.:.:.:. 0|0:25:15,2,8:15:589:2,8:80,325:-22.2951,-20.2217,-68.053,0,-41.8447,-46.0275 dDocent_Contig_8924 21 . G T 73.2301 . AB=0.241379;ABP=19.8579;AC=2;AF=0.333333;AN=6;AO=7;CIGAR=1X;DP=35;DPB=35;DPRA=2.41667;EPP=18.2106;EPPR=63.8115;GTI=0;LEN=1;MEANALT=1;MQM=47.1429;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=0.714286;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=257;QR=1113;RO=28;RPL=0;RPP=18.2106;RPPR=63.8115;RPR=7;RUN=1;SAF=7;SAP=18.2106;SAR=0;SRF=28;SRP=63.8115;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:26:20,6:20:794:6:218:-7.83794,0,-63.9487 0/1:3:2,1:2:81:1:39:-2.99347,0,-6.78264 0/0:6:6,0:6:238:0:0:0,-1.80618,-21.7923 dDocent_Contig_8925 91 . A G 68.3677 . AB=0.2;ABP=22.5536;AC=1;AF=0.25;AN=4;AO=5;CIGAR=1M1I1X;DP=36;DPB=38.5;DPRA=2.27273;EPP=13.8677;EPPR=65.983;GTI=0;LEN=1;MEANALT=2;MQM=60;MQMR=60;NS=2;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=175;QR=949;RO=29;RPL=5;RPP=13.8677;RPPR=65.983;RPR=0;RUN=1;SAF=5;SAP=13.8677;SAR=0;SRF=29;SRP=65.983;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|1:25:19,5:19:628:5:175:-8.53574,0,-49.2751 .:.:.:.:.:.:.:. 0|0:11:10,0:10:321:0:0:0,-3.0103,-29.0266 dDocent_Contig_8927 42 . C G 57.3518 . 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AB=0.272727;ABP=12.8806;AC=1;AF=0.166667;AN=6;AO=6;CIGAR=1X3M1X;DP=25;DPB=25;DPRA=3.66667;EPP=16.0391;EPPR=31.2394;GTI=0;LEN=1;MEANALT=2;MQM=60;MQMR=60;NS=3;NUMALT=2;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=231;QR=507;RO=13;RPL=0;RPP=16.0391;RPPR=31.2394;RPR=6;RUN=1;SAF=6;SAP=16.0391;SAR=0;SRF=13;SRP=31.2394;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|0:11:7,2,2:7:272:2,2:74,81:-4.58934,-0.660873,-22.3967,0,-16.316,-21.7629 0|0:3:0,0,3:0:0:0,3:0,120:-11.1873,-11.1873,-11.1873,-0.90309,-0.90309,0 0|1:11:6,4,1:6:235:4,1:157,41:-11.0925,0,-18.1043,-9.51114,-15.9217,-28.5336 dDocent_Contig_8948 27 . G C 425.458 . 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AB=0.6;ABP=8.22183;AC=3;AF=0.5;AN=6;AO=36;CIGAR=1X;DP=60;DPB=60;DPRA=0;EPP=81.1833;EPPR=55.1256;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=1367;QR=919;RO=24;RPL=36;RPP=81.1833;RPPR=55.1256;RPR=0;RUN=1;SAF=36;SAP=81.1833;SAR=0;SRF=24;SRP=55.1256;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:39:13,26:13:504:26:995:-78.1201,0,-33.9685 0/1:8:6,2:6:233:2:79:-5.08939,0,-18.9318 0/1:13:5,8:5:182:8:293:-22.8082,0,-12.8218 dDocent_Contig_8962 114 . G T 168.001 . AB=0.583333;ABP=3.73412;AC=1;AF=0.166667;AN=6;AO=7;CIGAR=1X3M1X2M1I11M;DP=35;DPB=35.3889;DPRA=1.04348;EPP=18.2106;EPPR=61.6401;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=240;QR=903;RO=27;RPL=0;RPP=18.2106;RPPR=61.6401;RPR=7;RUN=1;SAF=0;SAP=18.2106;SAR=7;SRF=0;SRP=61.6401;SRR=27;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|1:12:5,7:5:167:7:240:-18.323,0,-11.7472 0|0:13:12,0:12:406:0:0:0,-3.61236,-36.5451 0|0:10:10,0:10:330:0:0:0,-3.0103,-30.0214 dDocent_Contig_8963 24 . T A 359.726 . AB=0.222222;ABP=57.2971;AC=2;AF=0.333333;AN=6;AO=18;CIGAR=1X4M;DP=88;DPB=88;DPRA=5.78571;EPP=42.0968;EPPR=148.499;GTI=0;LEN=1;MEANALT=1.5;MQM=60;MQMR=60;NS=3;NUMALT=2;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=696;QR=2580;RO=67;RPL=0;RPP=42.0968;RPPR=148.499;RPR=18;RUN=1;SAF=18;SAP=42.0968;SAR=0;SRF=67;SRP=148.499;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|1:58:47,0,11:47:1814:0,11:0,426:-21.2342,-35.3826,-184.352,0,-149.356,-146.045 0|0:7:7,0,0:7:265:0,0:0,0:0,-2.10721,-24.2081,-2.10721,-24.2081,-24.2081 0|1:23:13,3,7:13:501:3,7:115,270:-18.2612,-12.7374,-52.9719,0,-31.7019,-39.0322 dDocent_Contig_8964 15 . G A 317.703 . AB=0.30303;ABP=14.1309;AC=3;AF=0.5;AN=6;AO=12;CIGAR=1X;DP=49;DPB=49;DPRA=1.25;EPP=29.068;EPPR=83.3548;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=472;QR=1468;RO=37;RPL=0;RPP=29.068;RPPR=83.3548;RPR=12;RUN=1;SAF=12;SAP=29.068;SAR=0;SRF=37;SRP=83.3548;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:33:23,10:23:911:10:392:-25.7013,0,-72.3621 1/1:2:0,2:0:0:2:80:-7.59157,-0.60206,0 0/0:14:14,0:14:557:0:0:0,-4.21442,-50.4705 dDocent_Contig_8966 1 . N G 77.8076 . AB=0;ABP=0;AC=2;AF=1;AN=2;AO=2;CIGAR=1X;DP=2;DPB=2;DPRA=0;EPP=7.35324;EPPR=0;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=0;NS=1;NUMALT=1;ODDS=5.99146;PAIRED=1;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=82;QR=0;RO=0;RPL=0;RPP=7.35324;RPPR=0;RPR=2;RUN=1;SAF=2;SAP=7.35324;SAR=0;SRF=0;SRP=0;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL ./.:.:.:.:.:.:.:. 1/1:2:0,2:0:0:2:82:-7.77968,-0.60206,0 ./.:.:.:.:.:.:.:. dDocent_Contig_8967 83 . C T 87.7714 . AB=0.333333;ABP=6.62942;AC=2;AF=0.333333;AN=6;AO=5;CIGAR=1X;DP=21;DPB=21;DPRA=1.25;EPP=13.8677;EPPR=37.7539;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=1.73472e-18;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=179;QR=584;RO=16;RPL=5;RPP=13.8677;RPPR=37.7539;RPR=0;RUN=1;SAF=5;SAP=13.8677;SAR=0;SRF=16;SRP=37.7539;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:11:8,3:8:296:3:109:-6.85667,0,-23.6828 0/0:6:6,0:6:219:0:0:0,-1.80618,-20.0642 0/1:4:2,2:2:69:2:70:-5.44321,0,-5.34854 dDocent_Contig_8968 8 . A G 261.226 . AB=0.333333;ABP=10.9724;AC=1;AF=0.166667;AN=6;AO=11;CIGAR=1X;DP=56;DPB=56;DPRA=2.86957;EPP=26.8965;EPPR=100.727;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=417;QR=1718;RO=45;RPL=0;RPP=26.8965;RPPR=100.727;RPR=11;RUN=1;SAF=11;SAP=26.8965;SAR=0;SRF=45;SRP=100.727;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:15:15,0:15:567:0:0:0,-4.51545,-51.3684 0/0:8:8,0:8:307:0:0:0,-2.40824,-27.9908 0/1:33:22,11:22:844:11:417:-27.9465,0,-66.349 dDocent_Contig_8970 98 . N C 66.4841 . AB=0;ABP=0;AC=2;AF=1;AN=2;AO=2;CIGAR=1X;DP=2;DPB=2;DPRA=0;EPP=7.35324;EPPR=0;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=0;NS=1;NUMALT=1;ODDS=5.99146;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=70;QR=0;RO=0;RPL=2;RPP=7.35324;RPPR=0;RPR=0;RUN=1;SAF=2;SAP=7.35324;SAR=0;SRF=0;SRP=0;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 1/1:2:0,2:0:0:2:70:-6.64733,-0.60206,0 ./.:.:.:.:.:.:.:. ./.:.:.:.:.:.:.:. dDocent_Contig_8971 57 . C A 913.028 . AB=0.418919;ABP=7.23587;AC=2;AF=0.333333;AN=6;AO=31;CIGAR=2X;DP=74;DPB=74;DPRA=0;EPP=70.3259;EPPR=76.8404;GTI=0;LEN=1;MEANALT=1.66667;MQM=60;MQMR=60;NS=3;NUMALT=2;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=1244;QR=1363;RO=34;RPL=31;RPP=70.3259;RPPR=76.8404;RPR=0;RUN=1;SAF=31;SAP=70.3259;SAR=0;SRF=34;SRP=76.8404;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|1:44:23,21,0:23:929:21,0:845,0:-63.1195,0,-70.6672,-70.0432,-76.9888,-146.629 1|0:6:1,3,2:1:38:3,2:121,80:-13.1685,-3.49328,-5.70009,-6.88087,0,-9.38954 0|0:24:10,7,7:10:396:7,7:278,285:-20.5052,-0.633968,-31.111,0,-9.70314,-30.4829 dDocent_Contig_8973 19 . A G 200.304 . AB=0.28125;ABP=16.3106;AC=2;AF=0.333333;AN=6;AO=9;CIGAR=1X;DP=40;DPB=40;DPRA=2;EPP=22.5536;EPPR=70.3259;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=360;QR=1250;RO=31;RPL=0;RPP=22.5536;RPPR=70.3259;RPR=9;RUN=1;SAF=9;SAP=22.5536;SAR=0;SRF=31;SRP=70.3259;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:28:20,8:20:803:8:319:-20.6446,0,-64.1572 0/0:8:8,0:8:325:0:0:0,-2.40824,-29.6191 0/1:4:3,1:3:122:1:41:-2.89045,0,-10.1684 dDocent_Contig_8974 41 . C A 54.0146 . AB=0.122449;ABP=63.6786;AC=1;AF=0.166667;AN=6;AO=6;CIGAR=1X;DP=147;DPB=147;DPRA=1;EPP=16.0391;EPPR=309.188;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=240;QR=5629;RO=141;RPL=0;RPP=16.0391;RPPR=309.188;RPR=6;RUN=1;SAF=6;SAP=16.0391;SAR=0;SRF=141;SRP=309.188;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:95:95,0:95:3799:0:0:0,-28.5978,-341.918 0/0:3:3,0:3:119:0:0:0,-0.90309,-11.0954 0/1:49:43,6:43:1711:6:240:-7.22518,0,-139.463 dDocent_Contig_8976 7 . T C 102.802 . AB=0.142857;ABP=26.2761;AC=4;AF=0.666667;AN=6;AO=5;CIGAR=1X;DP=23;DPB=23;DPRA=0;EPP=13.8677;EPPR=42.0968;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=1.73472e-18;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=195;QR=693;RO=18;RPL=0;RPP=13.8677;RPPR=42.0968;RPR=5;RUN=1;SAF=5;SAP=13.8677;SAR=0;SRF=18;SRP=42.0968;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:11:10,1:10:384:1:39:-0.585235,0,-31.6046 1/1:2:0,2:0:0:2:78:-7.40347,-0.60206,0 0/1:10:8,2:8:309:2:78:-4.39317,0,-25.1627 dDocent_Contig_8977 96 . C T 1935.09 . AB=0.701923;ABP=39.8418;AC=3;AF=0.5;AN=6;AO=73;CIGAR=1X;DP=104;DPB=104;DPRA=0;EPP=161.528;EPPR=70.3259;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=6.93889e-18;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=2549;QR=1079;RO=31;RPL=73;RPP=161.528;RPPR=70.3259;RPR=0;RUN=1;SAF=73;SAP=161.528;SAR=0;SRF=31;SRP=70.3259;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:56:11,45:11:393:45:1575:-125.178,0,-18.8533 0/1:20:14,6:14:472:6:196:-11.9402,0,-36.7772 0/1:28:6,22:6:214:22:778:-61.9139,0,-11.179 dDocent_Contig_8978 39 . A G 1085.84 . AB=0.596774;ABP=8.05372;AC=2;AF=0.333333;AN=6;AO=37;CIGAR=1X;DP=65;DPB=65;DPRA=10.3333;EPP=74.9036;EPPR=63.8115;GTI=0;LEN=1;MEANALT=1;MQM=58.5405;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=0.972973;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=1479;QR=1105;RO=28;RPL=0;RPP=83.3548;RPPR=63.8115;RPR=37;RUN=1;SAF=36;SAP=74.9036;SAR=1;SRF=28;SRP=63.8115;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:35:14,21:14:551:21:829:-61.4013,0,-39.392 0/0:3:3,0:3:115:0:0:0,-0.90309,-10.7224 0/1:27:11,16:11:439:16:650:-50.7055,0,-31.7375 dDocent_Contig_8979 125 . A G 68.9181 . AB=0.4;ABP=3.87889;AC=2;AF=0.333333;AN=6;AO=4;CIGAR=1X;DP=27;DPB=27;DPRA=0.294118;EPP=11.6962;EPPR=52.9542;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=141;QR=795;RO=23;RPL=0;RPP=11.6962;RPPR=52.9542;RPR=4;RUN=1;SAF=0;SAP=11.6962;SAR=4;SRF=0;SRP=52.9542;SRR=23;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:17:17,0:17:585:0:0:0,-5.11751,-52.975 0/1:3:1,2:1:35:2:70:-5.74424,0,-2.59554 0/1:7:5,2:5:175:2:71:-4.63485,0,-13.9865 dDocent_Contig_8980 35 . C T 727.925 . AB=0.242857;ABP=83.4168;AC=3;AF=0.5;AN=6;AO=34;CIGAR=1X;DP=140;DPB=140;DPRA=0;EPP=76.8404;EPPR=233.186;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=1325;QR=4234;RO=106;RPL=0;RPP=76.8404;RPPR=233.186;RPR=34;RUN=1;SAF=34;SAP=76.8404;SAR=0;SRF=106;SRP=233.186;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:54:49,5:49:1958:5:198:-1.94138,0,-160.155 0/1:17:12,5:12:485:5:192:-12.5281,0,-38.8839 0/1:69:45,24:45:1791:24:935:-63.6762,0,-140.634 dDocent_Contig_8983 48 . G T 205.776 . AB=0.168831;ABP=76.3609;AC=2;AF=0.333333;AN=6;AO=13;CIGAR=1X;DP=80;DPB=80;DPRA=12.8333;EPP=31.2394;EPPR=148.499;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=3.46945e-18;PAIRED=1;PAIREDR=0.895522;PAO=0;PQA=0;PQR=0;PRO=0;QA=517;QR=2687;RO=67;RPL=0;RPP=31.2394;RPPR=148.499;RPR=13;RUN=1;SAF=13;SAP=31.2394;SAR=0;SRF=67;SRP=148.499;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:64:54,10:54:2165:10:395:-16.6412,0,-175.76 0/0:3:3,0:3:121:0:0:0,-0.90309,-11.2802 0/1:13:10,3:10:401:3:122:-7.4591,0,-32.5365 dDocent_Contig_8984 11 . G T 92.3682 . AB=0.2;ABP=10.8276;AC=3;AF=0.5;AN=6;AO=4;CIGAR=1X;DP=20;DPB=20;DPRA=0.75;EPP=11.6962;EPPR=37.7539;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=8.67362e-19;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=145;QR=636;RO=16;RPL=0;RPP=11.6962;RPPR=37.7539;RPR=4;RUN=1;SAF=4;SAP=11.6962;SAR=0;SRF=16;SRP=37.7539;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:8:8,0:8:317:0:0:0,-2.40824,-28.8929 1/1:2:0,2:0:0:2:73:-6.9311,-0.60206,0 0/1:10:8,2:8:319:2:72:-3.82607,0,-26.0666 dDocent_Contig_8985 15 . C T 2285.39 . AB=0.487654;ABP=3.22477;AC=3;AF=0.5;AN=6;AO=79;CIGAR=1X;DP=162;DPB=162;DPRA=0;EPP=165.981;EPPR=183.243;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=0.987342;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=3118;QR=3314;RO=83;RPL=0;RPP=174.557;RPPR=183.243;RPR=79;RUN=1;SAF=78;SAP=165.981;SAR=1;SRF=83;SRP=183.243;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:98:60,38:60:2405:38:1512:-106.828,0,-187.102 0/1:22:2,20:2:77:20:781:-63.9861,0,-0.686482 0/1:42:21,21:21:832:21:825:-61.9267,0,-62.5503 dDocent_Contig_8986 28 . G A 3169.7 . AB=0.629139;ABP=24.8832;AC=4;AF=0.666667;AN=6;AO=105;CIGAR=1X;DP=161;DPB=161;DPRA=0;EPP=231.015;EPPR=124.613;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=6.93889e-18;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=4057;QR=2175;RO=56;RPL=0;RPP=231.015;RPPR=124.613;RPR=105;RUN=1;SAF=105;SAP=231.015;SAR=0;SRF=56;SRP=124.613;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:107:35,72:35:1370:72:2794:-219.401,0,-91.3465 1/1:10:0,10:0:0:10:381:-34.6428,-3.0103,0 0/1:44:21,23:21:805:23:882:-66.4487,0,-59.5159 dDocent_Contig_8988 157 . A T 364.47 . AB=0.157895;ABP=22.325;AC=4;AF=0.666667;AN=6;AO=3;CIGAR=1X1M1X3M;DP=45;DPB=45;DPRA=0;EPP=9.52472;EPPR=55.1256;GTI=0;LEN=1;MEANALT=2;MQM=48.3333;MQMR=60;NS=3;NUMALT=2;ODDS=0;PAIRED=0;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=112;QR=904;RO=24;RPL=1;RPP=3.73412;RPPR=55.1256;RPR=2;RUN=1;SAF=2;SAP=3.73412;SAR=1;SRF=0;SRP=55.1256;SRR=24;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|1:26:18,8,0:18:687:8,0:295,0:-16.2785,0,-54.3245,-21.6971,-56.7327,-78.0839 1|1:7:0,5,2:0:0:5,2:190,73:-17.7159,-6.31456,-4.80941,-11.7437,0,-11.1416 0|1:12:6,5,1:6:217:5,1:194,39:-7.97521,0,-16.2043,-6.82548,-14.7716,-24.2918 dDocent_Contig_8989 23 . G A 176.166 . AB=0.211538;ABP=40.5935;AC=3;AF=0.5;AN=6;AO=11;CIGAR=1X2M5I2M;DP=52;DPB=63;DPRA=0;EPP=26.8965;EPPR=89.8692;GTI=0;LEN=1;MEANALT=1.33333;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=418;QR=1544;RO=40;RPL=0;RPP=26.8965;RPPR=89.8692;RPR=11;RUN=1;SAF=11;SAP=26.8965;SAR=0;SRF=40;SRP=89.8692;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|1:32:26,5:26:1001:5:198:-8.64156,0,-80.8653 0|1:11:7,4:7:273:4:147:-10.2763,0,-21.6261 0|1:9:7,2:7:270:2:73:-4.2208,0,-21.9556 dDocent_Contig_8991 18 . T A 2412.33 . AB=0.496403;ABP=3.02592;AC=4;AF=0.666667;AN=6;AO=82;CIGAR=3M1X1M1X;DP=154;DPB=154.667;DPRA=0;EPP=181.071;EPPR=148.499;GTI=0;LEN=1;MEANALT=1.66667;MQM=60;MQMR=60;NS=3;NUMALT=2;ODDS=1.38778e-17;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=3209;QR=2637;RO=67;RPL=0;RPP=181.071;RPPR=148.499;RPR=82;RUN=1;SAF=82;SAP=181.071;SAR=0;SRF=67;SRP=148.499;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|1:111:61,0,50:61:2401:0,50:0,1977:-144.72,-163.083,-360.593,0,-197.904,-182.853 1|1:15:1,0,13:1:39:0,13:0,496:-41.0927,-41.3937,-44.6002,-0.702547,-3.91339,0 0|1:28:5,4,19:5:197:4,19:159,736:-58.9429,-47.3551,-62.3589,0,-3.11192,-10.485 dDocent_Contig_8992 114 . A G 689.59 . AB=0.0292683;ABP=397.572;AC=0;AF=0;AN=6;AO=6;CIGAR=2X;DP=218;DPB=218;DPRA=0;EPP=16.0391;EPPR=361.303;GTI=0;LEN=1;MEANALT=2;MQM=40;MQMR=41.4303;NS=3;NUMALT=2;ODDS=1.38778e-17;PAIRED=1;PAIREDR=0.987879;PAO=0;PQA=0;PQR=0;PRO=0;QA=206;QR=5704;RO=165;RPL=0;RPP=16.0391;RPPR=361.303;RPR=6;RUN=1;SAF=0;SAP=16.0391;SAR=6;SRF=0;SRP=361.303;SRR=165;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|0:143:117,2,24:117:4062:2,24:68,840:-31.4757,-61.3577,-364.367,0,-298.28,-296.395 0|0:13:9,0,4:9:287:0,4:0,138:-4.78291,-7.49218,-27.4091,0,-20.1655,-18.9614 0|0:62:39,4,19:39:1355:4,19:138,628:-38.223,-39.1357,-142.124,0,-93.3598,-98.4666 dDocent_Contig_8993 8 . A G 722.353 . AB=0.0955882;ABP=196.207;AC=1;AF=0.166667;AN=6;AO=13;CIGAR=1M2X1M1X4M1X1M1X2M1X;DP=136;DPB=140.133;DPRA=0;EPP=31.2394;EPPR=109.412;GTI=0;LEN=1;MEANALT=6;MQM=57.1538;MQMR=60;NS=3;NUMALT=6;ODDS=0;PAIRED=0.923077;PAIREDR=0.653061;PAO=0;PQA=0;PQR=0;PRO=0;QA=476;QR=1915;RO=49;RPL=0;RPP=31.2394;RPPR=109.412;RPR=13;RUN=1;SAF=13;SAP=31.2394;SAR=0;SRF=49;SRP=109.412;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|0:83:29,6,4,18,9,8,5:29:1127:6,4,18,9,8,5:221,153,648,341,312,170:-43.3103,-33.9673,-124.779,-39.4833,-114.029,-130.897,0,-74.5462,-80.0619,-87.1991,-24.0826,-98.6299,-104.146,-64.6629,-113.993,-26.3957,-100.943,-106.459,-66.9759,-91.0598,-116.607,-39.6049,-114.149,-119.665,-80.1825,-104.266,-106.579,-130.715 0|1:20:9,0,6,0,0,5,0:9:355:0,6,0,0,5,0:0,208,0,0,186,0:-13.9082,-16.6175,-45.8444,0,-29.2244,-27.4182,-16.6175,-45.8444,-29.2244,-45.8444,-16.6175,-45.8444,-29.2244,-45.8444,-45.8444,-1.43398,-30.6748,-14.0625,-30.6748,-30.6748,-29.1696,-16.6175,-45.8444,-29.2244,-45.8444,-45.8444,-30.6748,-45.8444 0|0:33:11,0,3,2,8,3,2:11:433:0,3,2,8,3,2:0,115,80,295,117,78:-20.5344,-23.8458,-59.474,-14.4055,-50.035,-49.132,-17.2529,-52.8826,-43.4434,-52.2805,0,-35.6286,-26.1901,-29.0371,-33.2203,-14.2325,-49.8624,-40.4233,-43.2708,-26.0172,-48.9593,-17.4323,-53.0616,-43.6225,-46.47,-29.2163,-43.4499,-52.4595 dDocent_Contig_8994 7 . T C 2210.89 . AB=0.426471;ABP=12.5903;AC=3;AF=0.5;AN=6;AO=87;CIGAR=1X3M1X;DP=204;DPB=204;DPRA=0;EPP=174.956;EPPR=244.044;GTI=0;LEN=1;MEANALT=2;MQM=58.1609;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=0.954023;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=3249;QR=4221;RO=111;RPL=0;RPP=191.928;RPPR=244.044;RPR=87;RUN=1;SAF=85;SAP=174.956;SAR=2;SRF=111;SRP=244.044;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|1:89:58,27:58:2208:27:1015:-65.7169,0,-173.001 0|1:40:19,21:19:714:21:770:-51.0518,0,-52.5473 0|1:75:34,39:34:1299:39:1464:-109.843,0,-95.0002 dDocent_Contig_8995 9 . G T 1073.57 . AB=0.557143;ABP=4.99565;AC=2;AF=0.333333;AN=6;AO=39;CIGAR=1X;DP=74;DPB=74;DPRA=8.75;EPP=87.6977;EPPR=79.0118;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=1459;QR=1335;RO=35;RPL=0;RPP=87.6977;RPPR=79.0118;RPR=39;RUN=1;SAF=39;SAP=87.6977;SAR=0;SRF=35;SRP=79.0118;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:47:19,28:19:728:28:1046:-80.2875,0,-51.7015 0/0:4:4,0:4:156:0:0:0,-1.20412,-14.4173 0/1:23:12,11:12:451:11:413:-30.5926,0,-34.0117 dDocent_Contig_8996 8 . A T 355.341 . AB=0.319149;ABP=16.3625;AC=1;AF=0.166667;AN=6;AO=15;CIGAR=1X;DP=94;DPB=94;DPRA=2;EPP=35.5824;EPPR=149.488;GTI=0;LEN=1;MEANALT=1;MQM=46.8;MQMR=58.5696;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=0.911392;PAO=0;PQA=0;PQR=0;PRO=0;QA=584;QR=3008;RO=79;RPL=0;RPP=35.5824;RPPR=174.557;RPR=15;RUN=1;SAF=15;SAP=35.5824;SAR=0;SRF=76;SRP=149.488;SRR=3;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:47:32,15:32:1220:15:584:-37.057,0,-95.8913 0/0:20:20,0:20:761:0:0:0,-6.0206,-68.0181 0/0:27:27,0:27:1027:0:0:0,-8.12781,-92.5113 dDocent_Contig_8997 23 . T G 837.818 . AB=0.5;ABP=3.0103;AC=3;AF=0.5;AN=6;AO=30;CIGAR=1X;DP=60;DPB=60;DPRA=0;EPP=68.1545;EPPR=68.1545;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=0.9;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=1181;QR=1187;RO=30;RPL=0;RPP=68.1545;RPPR=68.1545;RPR=30;RUN=1;SAF=30;SAP=68.1545;SAR=0;SRF=30;SRP=68.1545;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:36:19,17:19:759:17:662:-49.0706,0,-57.7912 0/1:17:7,10:7:269:10:398:-31.0613,0,-19.4542 0/1:7:4,3:4:159:3:121:-9.17278,0,-12.5851 dDocent_Contig_8998 76 . G T 1338.55 . AB=0.136842;ABP=111.835;AC=0;AF=0;AN=6;AO=13;CIGAR=1X3M1X;DP=101;DPB=101;DPRA=0;EPP=31.2394;EPPR=76.8404;GTI=0;LEN=1;MEANALT=2;MQM=60;MQMR=60;NS=3;NUMALT=2;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=433;QR=1149;RO=34;RPL=13;RPP=31.2394;RPPR=76.8404;RPR=0;RUN=1;SAF=13;SAP=31.2394;SAR=0;SRF=34;SRP=76.8404;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|0:63:14,12,37:14:474:12,37:400,1283:-100.083,-71.9244,-106.741,0,-6.05966,-27.2958 0|0:6:2,0,4:2:69:0,4:0,128:-10.0302,-10.6322,-16.2463,0,-5.9506,-4.74648 0|0:32:18,1,13:18:606:1,13:33,429:-29.2645,-32.0149,-80.8215,0,-46.4423,-45.1967 dDocent_Contig_8999 20 . T G 114.284 . AB=0.666667;ABP=4.45795;AC=1;AF=0.166667;AN=6;AO=4;CIGAR=1X;DP=23;DPB=23;DPRA=0.705882;EPP=11.6962;EPPR=44.2683;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=163;QR=773;RO=19;RPL=0;RPP=11.6962;RPPR=44.2683;RPR=4;RUN=1;SAF=4;SAP=11.6962;SAR=0;SRF=19;SRP=44.2683;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:12:12,0:12:491:0:0:0,-3.61236,-44.541 0/1:6:2,4:2:80:4:163:-13.2522,0,-5.78539 0/0:5:5,0:5:202:0:0:0,-1.50515,-18.5619 dDocent_Contig_9000 9 . G A 181.741 . AB=0.236842;ABP=25.8679;AC=1;AF=0.166667;AN=6;AO=9;CIGAR=1X;DP=68;DPB=68;DPRA=2.53333;EPP=22.5536;EPPR=131.127;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=1.73472e-18;PAIRED=0.888889;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=342;QR=2266;RO=59;RPL=0;RPP=22.5536;RPPR=131.127;RPR=9;RUN=1;SAF=9;SAP=22.5536;SAR=0;SRF=59;SRP=131.127;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:38:29,9:29:1113:9:342:-19.697,0,-89.0338 0/0:12:12,0:12:463:0:0:0,-3.61236,-42.0213 0/0:18:18,0:18:690:0:0:0,-5.41854,-62.4331 dDocent_Contig_9001 107 . N A 186.43 . AB=0;ABP=0;AC=4;AF=1;AN=4;AO=7;CIGAR=1X1M1X;DP=7;DPB=7;DPRA=0;EPP=18.2106;EPPR=0;GTI=0;LEN=1;MEANALT=1;MQM=33.1429;MQMR=0;NS=2;NUMALT=1;ODDS=0;PAIRED=0.428571;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=237;QR=0;RO=0;RPL=0;RPP=18.2106;RPPR=0;RPR=7;RUN=1;SAF=0;SAP=18.2106;SAR=7;SRF=0;SRP=0;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 1|1:5:0,5:0:0:5:168:-12.757,-1.50515,0 .:.:.:.:.:.:.:. 1|1:2:0,2:0:0:2:69:-5.58433,-0.60206,0 dDocent_Contig_9002 24 . G A 123.699 . AB=0.179487;ABP=37.8095;AC=1;AF=0.166667;AN=6;AO=7;CIGAR=1X;DP=78;DPB=78;DPRA=2;EPP=18.2106;EPPR=157.185;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=284;QR=2816;RO=71;RPL=0;RPP=18.2106;RPPR=157.185;RPR=7;RUN=1;SAF=7;SAP=18.2106;SAR=0;SRF=71;SRP=157.185;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:27:27,0:27:1086:0:0:0,-8.12781,-98.0281 0/0:12:12,0:12:465:0:0:0,-3.61236,-42.1959 0/1:39:32,7:32:1265:7:284:-14.1938,0,-102.371 dDocent_Contig_9003 97 . G T 169.777 . AB=0;ABP=0;AC=4;AF=1;AN=4;AO=10;CIGAR=11X;DP=10;DPB=10;DPRA=0;EPP=24.725;EPPR=0;GTI=0;LEN=1;MEANALT=1;MQM=18.1;MQMR=0;NS=2;NUMALT=1;ODDS=0;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=388;QR=0;RO=0;RPL=0;RPP=24.725;RPPR=0;RPR=10;RUN=1;SAF=10;SAP=24.725;SAR=0;SRF=0;SRP=0;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 1|1:9:0,9:0:0:9:349:-13.8167,-2.70927,0 .:.:.:.:.:.:.:. 1|1:1:0,1:0:0:1:39:-2.85866,-0.30103,0 dDocent_Contig_9005 53 . T C 223.002 . AB=0.5;ABP=3.0103;AC=1;AF=0.166667;AN=6;AO=4;CIGAR=1M8I2M1X4M;DP=62;DPB=79.625;DPRA=0;EPP=11.6962;EPPR=87.6977;GTI=0;LEN=1;MEANALT=2;MQM=60;MQMR=60;NS=3;NUMALT=4;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=150;QR=1495;RO=39;RPL=4;RPP=11.6962;RPPR=87.6977;RPR=0;RUN=1;SAF=4;SAP=11.6962;SAR=0;SRF=39;SRP=87.6977;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|0:30:20,3,0,3,2:20:768:3,0,3,2:99,0,121,80:-3.96438,-2.01353,-64.1369,-9.98498,-65.04,-73.0264,0,-55.0638,-63.0498,-62.1467,-3.38938,-58.4489,-66.4349,-56.458,-65.8329 0|1:8:3,1,4,0,0:3:106:1,4,0,0:40,150,0,0:-11.364,-8.98264,-17.3021,0,-5.30507,-7.39201,-12.2671,-17.6031,-8.59613,-20.887,-12.2671,-17.6031,-8.59613,-20.887,-20.887 0|0:24:16,0,0,0,6:16:621:0,0,0,6:0,0,0,212:-12.4917,-17.3082,-68.3652,-17.3082,-68.3652,-68.3652,-17.3082,-68.3652,-68.3652,-68.3652,0,-51.1113,-51.1113,-51.1113,-49.3051 dDocent_Contig_9007 10 . G A 347.008 . AB=0.306122;ABP=19.0083;AC=3;AF=0.5;AN=6;AO=15;CIGAR=1X;DP=49;DPB=49;DPRA=0;EPP=35.5824;EPPR=76.8404;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=597;QR=1328;RO=34;RPL=0;RPP=35.5824;RPPR=76.8404;RPR=15;RUN=1;SAF=15;SAP=35.5824;SAR=0;SRF=34;SRP=76.8404;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:22:16,6:16:626:6:238:-15.1715,0,-50.0497 0/1:2:1,1:1:27:1:40:-3.39362,0,-2.09772 0/1:25:17,8:17:675:8:319:-21.5515,0,-53.5526 dDocent_Contig_9008 23 . T A 41.6863 . AB=0.4;ABP=3.44459;AC=1;AF=0.166667;AN=6;AO=2;CIGAR=1X;DP=19;DPB=19;DPRA=0.714286;EPP=7.35324;EPPR=39.9253;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=79;QR=668;RO=17;RPL=0;RPP=7.35324;RPPR=39.9253;RPR=2;RUN=1;SAF=2;SAP=7.35324;SAR=0;SRF=17;SRP=39.9253;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:8:8,0:8:320:0:0:0,-2.40824,-29.1677 0/0:6:6,0:6:229:0:0:0,-1.80618,-20.9721 0/1:5:3,2:3:119:2:79:-5.99248,0,-9.59024 dDocent_Contig_9011 35 . A G 37.6213 . AB=0.135135;ABP=45.7942;AC=2;AF=0.333333;AN=6;AO=5;CIGAR=1X;DP=38;DPB=38;DPRA=18.5;EPP=13.8677;EPPR=74.6689;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=58.5758;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=0.969697;PAO=0;PQA=0;PQR=0;PRO=0;QA=196;QR=1300;RO=33;RPL=0;RPP=13.8677;RPPR=74.6689;RPR=5;RUN=1;SAF=5;SAP=13.8677;SAR=0;SRF=33;SRP=74.6689;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:23:20,3:20:776:3:115:-3.79869,0,-63.2258 0/0:1:1,0:1:41:0:0:0,-0.30103,-1.29935 0/1:14:12,2:12:483:2:81:-3.47131,0,-39.6063 dDocent_Contig_9012 52 . A G 356.189 . AB=0.225352;ABP=49.5287;AC=4;AF=0.666667;AN=6;AO=17;CIGAR=1X;DP=72;DPB=72;DPRA=0;EPP=39.9253;EPPR=122.441;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=660;QR=2192;RO=55;RPL=17;RPP=39.9253;RPPR=122.441;RPR=0;RUN=1;SAF=17;SAP=39.9253;SAR=0;SRF=55;SRP=122.441;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:38:30,8:30:1182:8:295:-15.4522,0,-95.2164 1/1:1:0,1:0:0:1:41:-4.09457,-0.30103,0 0/1:33:25,8:25:1010:8:324:-19.5943,0,-81.26 dDocent_Contig_9013 119 . T C 171.472 . AB=0.36;ABP=7.26639;AC=2;AF=0.333333;AN=6;AO=9;CIGAR=1X;DP=41;DPB=41;DPRA=0.78125;EPP=22.5536;EPPR=72.4974;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=305;QR=1086;RO=32;RPL=0;RPP=22.5536;RPPR=72.4974;RPR=9;RUN=1;SAF=0;SAP=22.5536;SAR=9;SRF=0;SRP=72.4974;SRR=32;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:21:13,8:13:434:8:270:-18.3076,0,-33.0594 0/1:4:3,1:3:95:1:35:-2.29451,0,-7.65986 0/0:16:16,0:16:557:0:0:0,-4.81648,-50.459 dDocent_Contig_9015 99 . N A 97.0363 . AB=0;ABP=0;AC=2;AF=1;AN=2;AO=3;CIGAR=2X;DP=3;DPB=3;DPRA=0;EPP=9.52472;EPPR=0;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=0;NS=1;NUMALT=1;ODDS=6.68461;PAIRED=1;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=104;QR=0;RO=0;RPL=3;RPP=9.52472;RPPR=0;RPR=0;RUN=1;SAF=3;SAP=9.52472;SAR=0;SRF=0;SRP=0;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 1|1:3:0,3:0:0:3:104:-9.70309,-0.90309,0 .:.:.:.:.:.:.:. .:.:.:.:.:.:.:. dDocent_Contig_9016 149 . C T 242.202 . AB=0.384615;ABP=6.01695;AC=2;AF=0.333333;AN=6;AO=10;CIGAR=1X;DP=28;DPB=28;DPRA=6.5;EPP=24.725;EPPR=42.0968;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=1.73472e-18;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=387;QR=706;RO=18;RPL=0;RPP=24.725;RPPR=42.0968;RPR=10;RUN=1;SAF=0;SAP=24.725;SAR=10;SRF=0;SRP=42.0968;SRR=18;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:11:8,3:8:315:3:119:-7.78317,0,-25.4012 0/0:2:2,0:2:79:0:0:0,-0.60206,-7.49724 0/1:15:8,7:8:312:7:268:-19.9595,0,-23.9271 dDocent_Contig_9017 45 . G A 85.6919 . AB=0.2;ABP=22.5536;AC=1;AF=0.25;AN=4;AO=5;CIGAR=1X3M1X;DP=25;DPB=25;DPRA=0;EPP=13.8677;EPPR=39.9253;GTI=0;LEN=1;MEANALT=1.5;MQM=60;MQMR=60;NS=2;NUMALT=2;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=203;QR=673;RO=17;RPL=0;RPP=13.8677;RPPR=39.9253;RPR=5;RUN=1;SAF=5;SAP=13.8677;SAR=0;SRF=17;SRP=39.9253;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|1:11:9,2,0:9:354:2,0:81,0:-4.3744,0,-28.9091,-7.08367,-29.5112,-36.1924 .:.:.:.:.:.:.:. 0|0:14:8,3,3:8:319:3,3:122,123:-7.74565,-0.0922955,-25.452,0,-16.1998,-25.3621 dDocent_Contig_9019 28 . A C 111.183 . AB=0.214286;ABP=22.8638;AC=1;AF=0.25;AN=4;AO=7;CIGAR=1X;DP=42;DPB=42;DPRA=0;EPP=18.2106;EPPR=79.0118;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=2;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=273;QR=1354;RO=35;RPL=0;RPP=18.2106;RPPR=79.0118;RPR=7;RUN=1;SAF=7;SAP=18.2106;SAR=0;SRF=35;SRP=79.0118;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:28:22,6:22:868:6:232:-12.8156,0,-70.0037 ./.:.:.:.:.:.:.:. 0/0:14:13,1:13:486:1:41:0,-0.119853,-39.9715 dDocent_Contig_9020 12 . T G 468.318 . AB=0.333333;ABP=16.0391;AC=2;AF=0.333333;AN=6;AO=20;CIGAR=1X;DP=133;DPB=133;DPRA=0;EPP=46.4397;EPPR=248.387;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=813;QR=4506;RO=113;RPL=0;RPP=46.4397;RPPR=248.387;RPR=20;RUN=1;SAF=20;SAP=46.4397;SAR=0;SRF=113;SRP=248.387;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:79:77,2:77:3079:2:81:0,-16.0956,-269.498 0/1:14:5,9:5:200:9:366:-29.0907,0,-14.1646 0/1:40:31,9:31:1227:9:366:-21.264,0,-98.6494 dDocent_Contig_9021 22 . C A 294.06 . 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AB=0;ABP=0;AC=2;AF=0.333333;AN=6;AO=2;CIGAR=1X;DP=41;DPB=41;DPRA=0.102564;EPP=7.35324;EPPR=87.6977;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=0;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=74;QR=1393;RO=39;RPL=0;RPP=7.35324;RPPR=87.6977;RPR=2;RUN=1;SAF=0;SAP=7.35324;SAR=2;SRF=0;SRP=87.6977;SRR=39;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:27:27,0:27:963:0:0:0,-8.12781,-86.9864 1/1:2:0,2:0:0:2:74:-7.02588,-0.60206,0 0/0:12:12,0:12:430:0:0:0,-3.61236,-39.0401 dDocent_Contig_9024 28 . G A 537.829 . 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T C 4046.77 . AB=0.637209;ABP=38.168;AC=3;AF=0.5;AN=6;AO=137;CIGAR=1X;DP=215;DPB=215;DPRA=0;EPP=300.502;EPPR=165.871;GTI=0;LEN=1;MEANALT=1.33333;MQM=59.9489;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=5262;QR=2880;RO=75;RPL=0;RPP=300.502;RPPR=165.871;RPR=137;RUN=1;SAF=137;SAP=300.502;SAR=0;SRF=75;SRP=165.871;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:80:21,59:21:800:59:2270:-180.432,0,-48.2413 0/1:88:35,50:35:1343:50:1910:-146.231,0,-95.2417 0/1:47:19,28:19:737:28:1082:-83.5368,0,-52.5128 dDocent_Contig_9026 12 . G A 457.55 . AB=0.277778;ABP=33.8935;AC=3;AF=0.5;AN=6;AO=20;CIGAR=1X;DP=72;DPB=72;DPRA=0;EPP=46.4397;EPPR=115.927;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=798;QR=2080;RO=52;RPL=0;RPP=46.4397;RPPR=115.927;RPR=20;RUN=1;SAF=20;SAP=46.4397;SAR=0;SRF=52;SRP=115.927;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:44:30,14:30:1198:14:557:-37.2234,0,-94.8439 0/1:3:2,1:2:81:1:41:-3.19148,0,-6.78264 0/1:25:20,5:20:801:5:200:-10.8538,0,-64.8782 dDocent_Contig_9027 10 . C A 397.78 . AB=0.384615;ABP=7.52028;AC=2;AF=0.333333;AN=6;AO=15;CIGAR=1X;DP=41;DPB=41;DPRA=9.75;EPP=35.5824;EPPR=59.4686;GTI=0;LEN=1;MEANALT=1;MQM=58.6667;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=604;QR=1051;RO=26;RPL=0;RPP=35.5824;RPPR=59.4686;RPR=15;RUN=1;SAF=15;SAP=35.5824;SAR=0;SRF=26;SRP=59.4686;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:22:14,8:14:567:8:323:-22.8159,0,-44.7502 0/0:2:2,0:2:78:0:0:0,-0.60206,-7.4033 0/1:17:10,7:10:406:7:281:-20.4846,0,-31.7829 dDocent_Contig_9028 16 . C T 460.692 . AB=0.346939;ABP=12.9813;AC=4;AF=0.666667;AN=6;AO=19;CIGAR=1X;DP=51;DPB=51;DPRA=0;EPP=44.2683;EPPR=72.4974;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=703;QR=1278;RO=32;RPL=0;RPP=44.2683;RPPR=72.4974;RPR=19;RUN=1;SAF=19;SAP=44.2683;SAR=0;SRF=32;SRP=72.4974;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:36:22,14:22:871:14:518:-36.1254,0,-67.8558 1/1:2:0,2:0:0:2:74:-7.02588,-0.60206,0 0/1:13:10,3:10:407:3:111:-6.44053,0,-33.077 dDocent_Contig_9029 13 . A G 377.788 . AB=0.113208;ABP=71.8828;AC=0;AF=0;AN=6;AO=12;CIGAR=2X;DP=244;DPB=244;DPRA=0;EPP=29.068;EPPR=419.933;GTI=0;LEN=1;MEANALT=2.5;MQM=17.6667;MQMR=59.9635;NS=3;NUMALT=2;ODDS=0;PAIRED=0.0833333;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=478;QR=7641;RO=192;RPL=0;RPP=29.068;RPPR=419.933;RPR=12;RUN=1;SAF=12;SAP=29.068;SAR=0;SRF=192;SRP=419.933;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|0:141:122,6,12:122:4875:6,12:237,389:0,-29.2164,-429.026,-8.51448,-402.694,-406.619 0|0:50:33,0,17:33:1295:0,17:0,536:-28.902,-38.836,-145.399,0,-106.884,-101.767 0|0:53:37,6,10:37:1471:6,10:241,324:-12.3997,-17.8473,-137.213,0,-115.599,-118.302 dDocent_Contig_9031 9 . G A 140.469 . AB=0.225;ABP=29.2851;AC=3;AF=0.5;AN=6;AO=9;CIGAR=1X;DP=40;DPB=40;DPRA=0;EPP=22.5536;EPPR=70.3259;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=339;QR=1156;RO=31;RPL=0;RPP=22.5536;RPPR=70.3259;RPR=9;RUN=1;SAF=9;SAP=22.5536;SAR=0;SRF=31;SRP=70.3259;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:24:19,5:19:721:5:191:-10.3339,0,-57.993 0/1:6:4,2:4:151:2:74:-5.21925,0,-12.1512 0/1:10:8,2:8:284:2:74:-4.01513,0,-22.8828 dDocent_Contig_9032 7 . T C 149.939 . AB=0.318182;ABP=9.32731;AC=2;AF=0.5;AN=4;AO=7;CIGAR=1X;DP=22;DPB=22;DPRA=0;EPP=18.2106;EPPR=33.4109;GTI=0;LEN=1;MEANALT=1.5;MQM=60;MQMR=60;NS=2;NUMALT=1;ODDS=0;PAIRED=0.285714;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=273;QR=524;RO=14;RPL=0;RPP=18.2106;RPPR=33.4109;RPR=7;RUN=1;SAF=7;SAP=18.2106;SAR=0;SRF=14;SRP=33.4109;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:11:9,2:9:344:2:78:-4.09214,0,-28.007 ./.:.:.:.:.:.:.:. 0/1:11:5,5:5:180:5:195:-14.599,0,-13.2303 dDocent_Contig_9033 111 . C T 108.48 . AB=0.384615;ABP=4.51363;AC=1;AF=0.25;AN=4;AO=5;CIGAR=1X;DP=23;DPB=23;DPRA=1.3;EPP=13.8677;EPPR=42.0968;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=2;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=179;QR=620;RO=18;RPL=0;RPP=13.8677;RPPR=42.0968;RPR=5;RUN=1;SAF=0;SAP=13.8677;SAR=5;SRF=0;SRP=42.0968;SRR=18;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:13:8,5:8:281:5:179:-12.547,0,-21.7173 ./.:.:.:.:.:.:.:. 0/0:10:10,0:10:339:0:0:0,-3.0103,-30.8379 dDocent_Contig_9034 18 . C T 447.602 . AB=0.160305;ABP=134.31;AC=1;AF=0.166667;AN=6;AO=21;CIGAR=7M1X1M2I7M;DP=187;DPB=190.125;DPRA=32.75;EPP=48.6112;EPPR=330.903;GTI=0;LEN=1;MEANALT=7;MQM=60;MQMR=60;NS=3;NUMALT=2;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=837;QR=5954;RO=151;RPL=0;RPP=48.6112;RPPR=330.903;RPR=21;RUN=1;SAF=21;SAP=48.6112;SAR=0;SRF=151;SRP=330.903;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|1:131:102,21,0:102:4032:21,0:837,0:-38.2743,0,-325.544,-68.9793,-331.866,-400.794 0|0:4:4,0,0:4:160:0,0:0,0:0,-1.20412,-14.784,-1.20412,-14.784,-14.784 0|0:52:45,0,7:45:1762:0,7:0,281:-10.0086,-23.555,-168.421,0,-145.265,-143.158 dDocent_Contig_9035 12 . T C 122.263 . AB=0.0930233;ABP=64.872;AC=1;AF=0.166667;AN=6;AO=4;CIGAR=1X4M1I2M;DP=57;DPB=57.5714;DPRA=6.14286;EPP=11.6962;EPPR=100.727;GTI=0;LEN=1;MEANALT=3;MQM=52;MQMR=60;NS=3;NUMALT=2;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=146;QR=1781;RO=45;RPL=0;RPP=11.6962;RPPR=100.727;RPR=4;RUN=1;SAF=4;SAP=11.6962;SAR=0;SRF=45;SRP=100.727;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|1:43:31,7,4:31:1224:7,4:280,146:-13.7484,0,-98.6254,-11.2252,-88.8685,-110.73 0|0:2:2,0,0:2:80:0,0:0,0:0,-0.60206,-7.59157,-0.60206,-7.59157,-7.59157 0|0:12:12,0,0:12:477:0,0:0,0:0,-3.61236,-43.2817,-3.61236,-43.2817,-43.2817 dDocent_Contig_9036 24 . C A 79.5469 . AB=0.307692;ABP=7.18621;AC=2;AF=0.333333;AN=6;AO=4;CIGAR=1X;DP=25;DPB=25;DPRA=0.541667;EPP=11.6962;EPPR=46.4397;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=0.75;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=162;QR=795;RO=20;RPL=0;RPP=11.6962;RPPR=46.4397;RPR=4;RUN=1;SAF=4;SAP=11.6962;SAR=0;SRF=20;SRP=46.4397;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:4:3,1:3:118:1:40:-2.79156,0,-9.79746 0/0:12:11,0:11:434:0:0:0,-3.31133,-39.0309 0/1:9:6,3:6:243:3:122:-8.66322,0,-19.5387 dDocent_Contig_9037 98 . N A 10434.2 . AB=0;ABP=0;AC=6;AF=1;AN=6;AO=333;CIGAR=1X;DP=338;DPB=338;DPRA=0;EPP=726.111;EPPR=0;GTI=0;LEN=1;MEANALT=1.66667;MQM=59.7357;MQMR=0;NS=3;NUMALT=1;ODDS=0;PAIRED=0.993994;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=11597;QR=0;RO=0;RPL=333;RPP=726.111;RPPR=0;RPR=0;RUN=1;SAF=333;SAP=726.111;SAR=0;SRF=0;SRP=0;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 1/1:165:0,165:0:0:165:5730:-515.833,-49.67,0 1/1:46:0,45:0:0:45:1576:-141.242,-13.5464,0 1/1:127:0,123:0:0:123:4291:-385.87,-37.0267,0 dDocent_Contig_9038 9 . G A 49.4823 . AB=0.178571;ABP=28.1373;AC=2;AF=0.333333;AN=6;AO=5;CIGAR=1X;DP=44;DPB=44;DPRA=0.875;EPP=13.8677;EPPR=87.6977;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=180;QR=1497;RO=39;RPL=0;RPP=13.8677;RPPR=87.6977;RPR=5;RUN=1;SAF=5;SAP=13.8677;SAR=0;SRF=39;SRP=87.6977;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:22:19,3:19:738:3:115:-4.10223,0,-60.1286 0/1:6:4,2:4:150:2:65:-4.36711,0,-12.0585 0/0:16:16,0:16:609:0:0:0,-4.81648,-55.148 dDocent_Contig_9039 57 . T A 316.533 . AB=0.294118;ABP=15.5282;AC=3;AF=0.5;AN=6;AO=12;CIGAR=2X;DP=46;DPB=46;DPRA=1.8;EPP=29.068;EPPR=76.8404;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=0.970588;PAO=0;PQA=0;PQR=0;PRO=0;QA=474;QR=1348;RO=34;RPL=12;RPP=29.068;RPPR=76.8404;RPR=0;RUN=1;SAF=12;SAP=29.068;SAR=0;SRF=34;SRP=76.8404;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|1:34:24,10:24:950:10:393:-25.4901,0,-75.5613 1|1:2:0,2:0:0:2:81:-7.68573,-0.60206,0 0|0:10:10,0:10:398:0:0:0,-3.0103,-36.1785 dDocent_Contig_9040 13 . C A 110.411 . AB=0.107595;ABP=214.33;AC=2;AF=0.333333;AN=6;AO=17;CIGAR=1X;DP=183;DPB=183;DPRA=3.16;EPP=39.9253;EPPR=363.475;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=0.987952;PAO=0;PQA=0;PQR=0;PRO=0;QA=682;QR=6626;RO=166;RPL=0;RPP=39.9253;RPPR=363.475;RPR=17;RUN=1;SAF=17;SAP=39.9253;SAR=0;SRF=166;SRP=363.475;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:106:94,12:94:3758:12:479:-11.5502,0,-306.317 0/0:25:25,0:25:1003:0:0:0,-7.52575,-90.5668 0/1:52:47,5:47:1865:5:203:-2.9995,0,-152.405 dDocent_Contig_9042 9 . G T 387.163 . AB=0.3;ABP=23.8564;AC=3;AF=0.5;AN=6;AO=18;CIGAR=1X;DP=60;DPB=60;DPRA=0;EPP=42.0968;EPPR=94.2121;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=680;QR=1606;RO=42;RPL=0;RPP=42.0968;RPPR=94.2121;RPR=18;RUN=1;SAF=18;SAP=42.0968;SAR=0;SRF=42;SRP=94.2121;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:31:26,5:26:993:5:193:-8.40956,0,-80.3473 0/1:3:2,1:2:76:1:35:-2.59554,0,-6.31158 0/1:26:14,12:14:537:12:452:-33.1988,0,-40.8468 dDocent_Contig_9044 26 . G A 53.9895 . AB=0.105263;ABP=105.87;AC=1;AF=0.166667;AN=6;AO=9;CIGAR=1X;DP=139;DPB=139;DPRA=4.84615;EPP=22.5536;EPPR=285.302;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=6.93889e-18;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=365;QR=5128;RO=130;RPL=0;RPP=22.5536;RPPR=285.302;RPR=9;RUN=1;SAF=9;SAP=22.5536;SAR=0;SRF=130;SRP=285.302;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:76:68,8:68:2677:8:327:-6.92183,0,-218.163 0/0:13:13,0:13:518:0:0:0,-3.91339,-46.9665 0/0:50:49,1:49:1933:1:38:0,-11.2542,-170.378 dDocent_Contig_9045 12 . G T 478.87 . AB=0.173913;ABP=24.253;AC=1;AF=0.166667;AN=6;AO=4;CIGAR=1X2M1X;DP=47;DPB=47;DPRA=0;EPP=11.6962;EPPR=57.2971;GTI=0;LEN=1;MEANALT=3;MQM=60;MQMR=60;NS=3;NUMALT=2;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=158;QR=989;RO=25;RPL=0;RPP=11.6962;RPPR=57.2971;RPR=4;RUN=1;SAF=4;SAP=11.6962;SAR=0;SRF=25;SRP=57.2971;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|1:23:15,4,3:15:591:4,3:158,122:-8.49397,0,-47.4262,-2.93475,-38.5642,-50.6644 0|0:5:3,0,2:3:119:0,2:0,82:-6.27453,-7.17762,-16.9649,0,-10.1914,-9.58935 0|0:19:7,0,12:7:279:0,12:0,489:-38.6412,-40.7484,-63.7204,0,-23.3734,-19.7611 dDocent_Contig_9046 20 . C A 732.634 . AB=0.430769;ABP=5.71629;AC=3;AF=0.5;AN=6;AO=28;CIGAR=1X;DP=65;DPB=65;DPRA=0;EPP=63.8115;EPPR=83.3548;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=0.972973;PAO=0;PQA=0;PQR=0;PRO=0;QA=1081;QR=1468;RO=37;RPL=0;RPP=63.8115;RPPR=83.3548;RPR=28;RUN=1;SAF=28;SAP=63.8115;SAR=0;SRF=37;SRP=83.3548;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:32:20,12:20:788:12:468:-32.8328,0,-61.6033 0/1:16:9,7:9:359:7:267:-19.5741,0,-27.8559 0/1:17:8,9:8:321:9:346:-26.3793,0,-24.1408 dDocent_Contig_9047 31 . A G 57.3536 . AB=0.166667;ABP=26.1727;AC=1;AF=0.166667;AN=6;AO=4;CIGAR=1X;DP=82;DPB=82;DPRA=0.827586;EPP=11.6962;EPPR=172.385;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=160;QR=3073;RO=78;RPL=0;RPP=11.6962;RPPR=172.385;RPR=4;RUN=1;SAF=4;SAP=11.6962;SAR=0;SRF=78;SRP=172.385;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:55:55,0:55:2171:0:0:0,-16.5566,-195.571 0/0:3:3,0:3:120:0:0:0,-0.90309,-11.1873 0/1:24:20,4:20:782:4:160:-7.55908,0,-63.4638 dDocent_Contig_9049 11 . T C 468.945 . AB=0.6;ABP=6.05036;AC=3;AF=0.5;AN=6;AO=21;CIGAR=1X;DP=35;DPB=35;DPRA=0;EPP=48.6112;EPPR=33.4109;GTI=0;LEN=1;MEANALT=1;MQM=37.6667;MQMR=56.7143;NS=3;NUMALT=1;ODDS=0;PAIRED=0;PAIREDR=0.785714;PAO=0;PQA=0;PQR=0;PRO=0;QA=843;QR=543;RO=14;RPL=0;RPP=48.6112;RPPR=33.4109;RPR=21;RUN=1;SAF=21;SAP=48.6112;SAR=0;SRF=14;SRP=33.4109;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:18:7,11:7:257:11:438:-28.2432,0,-17.6837 0/1:4:1,3:1:41:3:119:-6.28938,0,-2.89045 0/1:13:6,7:6:245:7:286:-17.8666,0,-18.143 dDocent_Contig_9050 11 . T C 195.268 . AB=0.375;ABP=5.18177;AC=3;AF=0.5;AN=6;AO=7;CIGAR=1X2M;DP=24;DPB=24;DPRA=1.21429;EPP=18.2106;EPPR=33.4109;GTI=0;LEN=1;MEANALT=1.5;MQM=60;MQMR=60;NS=3;NUMALT=2;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=273;QR=560;RO=14;RPL=0;RPP=18.2106;RPPR=33.4109;RPR=7;RUN=1;SAF=7;SAP=18.2106;SAR=0;SRF=14;SRP=33.4109;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|1:16:7,3,6:7:278:3,6:112,232:-16.9536,-9.89605,-31.8849,0,-13.7408,-21.0967 0|0:7:7,0,0:7:282:0,0:0,0:0,-2.10721,-25.7526,-2.10721,-25.7526,-25.7526 1|1:1:0,0,1:0:0:0,1:0,41:-4.09457,-4.09457,-4.09457,-0.30103,-0.30103,0 dDocent_Contig_9052 16 . C A 157.748 . AB=0.291667;ABP=12.0581;AC=2;AF=0.333333;AN=6;AO=7;CIGAR=1X;DP=29;DPB=29;DPRA=2.4;EPP=18.2106;EPPR=50.7827;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=286;QR=885;RO=22;RPL=0;RPP=18.2106;RPPR=50.7827;RPR=7;RUN=1;SAF=7;SAP=18.2106;SAR=0;SRF=22;SRP=50.7827;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:15:11,4:11:444:4:164:-10.6344,0,-35.8004 0/0:5:5,0:5:202:0:0:0,-1.50515,-18.5621 0/1:9:6,3:6:239:3:122:-8.66322,0,-19.1732 dDocent_Contig_9053 60 . C A 250.335 . AB=0.206349;ABP=50.1967;AC=1;AF=0.166667;AN=6;AO=13;CIGAR=1X;DP=93;DPB=93;DPRA=4.2;EPP=31.2394;EPPR=176.728;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=0.923077;PAIREDR=0.9625;PAO=0;PQA=0;PQR=0;PRO=0;QA=502;QR=3190;RO=80;RPL=13;RPP=31.2394;RPPR=176.728;RPR=0;RUN=1;SAF=13;SAP=31.2394;SAR=0;SRF=80;SRP=176.728;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:63:50,13:50:1985:13:502:-26.5564,0,-159.881 0/0:7:7,0:7:280:0:0:0,-2.10721,-25.5712 0/0:23:23,0:23:925:0:0:0,-6.92369,-83.5561 dDocent_Contig_9056 40 . A G 33.081 . AB=0.137931;ABP=36.0317;AC=1;AF=0.166667;AN=6;AO=6;CIGAR=1X;DP=100;DPB=100;DPRA=2.27778;EPP=16.0391;EPPR=207.129;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=229;QR=3761;RO=94;RPL=0;RPP=16.0391;RPPR=207.129;RPR=6;RUN=1;SAF=6;SAP=16.0391;SAR=0;SRF=94;SRP=207.129;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:53:51,2:51:2034:2:79:0,-8.45734,-175.756 0/0:18:18,0:18:719:0:0:0,-5.41854,-65.0347 0/1:29:25,4:25:1008:4:150:-5.13179,0,-82.2832 dDocent_Contig_9057 88 . A C 325.264 . AB=0.395349;ABP=7.10075;AC=3;AF=0.5;AN=6;AO=17;CIGAR=1X;DP=43;DPB=43;DPRA=0;EPP=39.9253;EPPR=59.4686;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=556;QR=872;RO=26;RPL=17;RPP=39.9253;RPPR=59.4686;RPR=0;RUN=1;SAF=17;SAP=39.9253;SAR=0;SRF=26;SRP=59.4686;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:24:17,7:17:574:7:236:-14.3457,0,-44.7566 0/1:6:3,3:3:99:3:91:-6.68537,0,-7.43094 0/1:13:6,7:6:199:7:229:-17.0182,0,-14.3232 dDocent_Contig_9058 22 . G A 2673.05 . AB=0.761062;ABP=69.9032;AC=3;AF=0.5;AN=6;AO=86;CIGAR=1X;DP=113;DPB=113;DPRA=0;EPP=189.757;EPPR=61.6401;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=3400;QR=1067;RO=27;RPL=0;RPP=189.757;RPPR=61.6401;RPR=86;RUN=1;SAF=86;SAP=189.757;SAR=0;SRF=27;SRP=61.6401;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:87:13,74:13:514:74:2921:-236.797,0,-20.4146 0/1:9:3,6:3:119:6:236:-18.9006,0,-8.38574 0/1:17:11,6:11:434:6:243:-17.1305,0,-34.2936 dDocent_Contig_9060 11 . G A 426.808 . AB=0.275362;ABP=33.2536;AC=3;AF=0.5;AN=6;AO=19;CIGAR=1X;DP=69;DPB=69;DPRA=0;EPP=44.2683;EPPR=111.584;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=754;QR=1971;RO=50;RPL=0;RPP=44.2683;RPPR=111.584;RPR=19;RUN=1;SAF=19;SAP=44.2683;SAR=0;SRF=50;SRP=111.584;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:35:25,10:25:991:10:396:-25.4609,0,-78.9486 0/1:5:2,3:2:69:3:118:-9.49705,0,-5.04617 0/1:29:23,6:23:911:6:240:-13.2456,0,-73.5692 dDocent_Contig_9061 37 . A G 195.951 . AB=0.210526;ABP=30.668;AC=2;AF=0.333333;AN=6;AO=8;CIGAR=1X3M1D3M1X2M;DP=61;DPB=60.8182;DPRA=0;EPP=20.3821;EPPR=74.6689;GTI=0;LEN=1;MEANALT=4;MQM=49.875;MQMR=60;NS=3;NUMALT=5;ODDS=0;PAIRED=0;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=307;QR=1284;RO=33;RPL=0;RPP=20.3821;RPPR=74.6689;RPR=8;RUN=1;SAF=8;SAP=20.3821;SAR=0;SRF=33;SRP=74.6689;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|0:23:15,0,1,3,0,3:15:585:0,1,3,0,3:0,41,122,0,93:-5.57772,-10.0932,-58.2004,-6.85783,-54.9696,-54.6685,0,-48.1329,-44.9018,-47.2299,-10.0932,-58.2004,-54.9696,-48.1329,-58.2004,-3.48388,-51.56,-48.3299,-41.4944,-51.56,-50.6569 0|1:10:3,3,2,0,2,0:3:116:3,2,0,2,0:114,81,0,81,0:-8.27478,0,-8.62044,-2.77887,-3.12669,-11.7049,-9.17787,-9.52353,-12.307,-18.7057,-2.49165,-2.83947,-5.62168,-12.0221,-11.42,-9.17787,-9.52353,-12.307,-18.7057,-12.0221,-18.7057 0|1:28:15,5,1,0,5,0:15:583:5,1,0,5,0:193,40,0,181,0:-11.25,0,-46.4261,-12.5956,-44.7628,-60.2162,-15.7655,-47.9313,-60.5172,-63.6856,-0.995985,-33.1646,-45.7501,-48.9184,-47.4132,-15.7655,-47.9313,-60.5172,-63.6856,-48.9184,-63.6856 dDocent_Contig_9062 54 . G A 611.029 . AB=0.0666667;ABP=51.9408;AC=0;AF=0;AN=6;AO=8;CIGAR=1X2M1I1X;DP=306;DPB=320.75;DPRA=0;EPP=20.3821;EPPR=526.335;GTI=0;LEN=1;MEANALT=3;MQM=60;MQMR=60;NS=3;NUMALT=3;ODDS=0;PAIRED=1;PAIREDR=0.979253;PAO=0;PQA=0;PQR=0;PRO=0;QA=310;QR=9294;RO=241;RPL=8;RPP=20.3821;RPPR=526.335;RPR=0;RUN=1;SAF=8;SAP=20.3821;SAR=0;SRF=241;SRP=526.335;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|0:193:156,0,34,2:156:6003:0,34,2:0,1194,81:-37.7197,-84.6804,-577.576,0,-492.873,-482.638,-77.996,-570.897,-486.193,-570.295 0|0:30:12,2,13,3:12:461:2,13,3:77,462,123:-26.906,-24.1884,-61.4588,0,-31.5106,-33.9191,-20.3491,-51.9009,-27.6757,-57.3237 0|0:83:73,6,3,0:73:2830:6,3,0:233,104,0:0,-2.74761,-233.568,-14.4677,-227.86,-246.103,-21.9752,-235.374,-247.006,-254.521 dDocent_Contig_9063 39 . G C 384.302 . AB=0.565217;ABP=3.86001;AC=1;AF=0.166667;AN=6;AO=13;CIGAR=2X;DP=40;DPB=40;DPRA=2.70588;EPP=31.2394;EPPR=61.6401;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=1.73472e-18;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=517;QR=1046;RO=27;RPL=0;RPP=31.2394;RPPR=61.6401;RPR=13;RUN=1;SAF=13;SAP=31.2394;SAR=0;SRF=27;SRP=61.6401;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|1:23:10,13:10:388:13:517:-39.9531,0,-28.3496 0|0:11:11,0:11:427:0:0:0,-3.31133,-38.7811 0|0:6:6,0:6:231:0:0:0,-1.80618,-21.1526 dDocent_Contig_9064 23 . C A 50.3314 . AB=0.2;ABP=14.7363;AC=1;AF=0.166667;AN=6;AO=3;CIGAR=1X;DP=66;DPB=66;DPRA=0.588235;EPP=9.52472;EPPR=139.813;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=0;PAIREDR=0.904762;PAO=0;PQA=0;PQR=0;PRO=0;QA=122;QR=2527;RO=63;RPL=0;RPP=9.52472;RPPR=139.813;RPR=3;RUN=1;SAF=3;SAP=9.52472;SAR=0;SRF=63;SRP=139.813;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:23:23,0:23:926:0:0:0,-6.92369,-83.643 0/1:15:12,3:12:483:3:122:-6.85704,0,-39.3063 0/0:28:28,0:28:1118:0:0:0,-8.42884,-100.904 dDocent_Contig_9066 10 . A G 768.031 . AB=0.394737;ABP=10.3247;AC=3;AF=0.5;AN=6;AO=30;CIGAR=1M1D2M2X2M1X;DP=76;DPB=72.3333;DPRA=0;EPP=68.1545;EPPR=96.3836;GTI=0;LEN=1;MEANALT=1.33333;MQM=60;MQMR=60;NS=3;NUMALT=2;ODDS=0;PAIRED=0;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=1150;QR=1683;RO=43;RPL=0;RPP=68.1545;RPPR=96.3836;RPR=30;RUN=1;SAF=30;SAP=68.1545;SAR=0;SRF=43;SRP=96.3836;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|1:46:34,12,0:34:1339:12,0:463,0:-28.1735,0,-106.939,-38.4086,-110.551,-148.572 0|1:9:3,6,0:3:116:6,0:233,0:-18.6308,0,-8.10843,-19.5339,-9.91461,-29.0616 0|1:21:6,12,3:6:228:12,3:454,117:-35.5216,0,-15.1788,-31.8158,-13.2983,-49.6103 dDocent_Contig_9071 9 . G T 107.873 . AB=0.666667;ABP=4.45795;AC=1;AF=0.166667;AN=6;AO=6;CIGAR=1X;DP=79;DPB=79;DPRA=1.14583;EPP=16.0391;EPPR=161.528;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=234;QR=2806;RO=73;RPL=0;RPP=16.0391;RPPR=161.528;RPR=6;RUN=1;SAF=6;SAP=16.0391;SAR=0;SRF=73;SRP=161.528;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:49:47,2:47:1810:2:78:0,-7.347,-155.747 0/1:6:2,4:2:74:4:156:-12.6111,0,-5.21925 0/0:24:24,0:24:922:0:0:0,-7.22472,-83.2963 dDocent_Contig_9073 1 . N G 151.282 . AB=0;ABP=0;AC=4;AF=1;AN=4;AO=7;CIGAR=1X;DP=7;DPB=7;DPRA=0;EPP=18.2106;EPPR=0;GTI=0;LEN=1;MEANALT=1;MQM=25.7143;MQMR=0;NS=2;NUMALT=1;ODDS=0;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=245;QR=0;RO=0;RPL=0;RPP=18.2106;RPPR=0;RPR=7;RUN=1;SAF=0;SAP=18.2106;SAR=7;SRF=0;SRP=0;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL ./.:.:.:.:.:.:.:. 1/1:1:0,1:0:0:1:35:-3.47877,-0.30103,0 1/1:6:0,6:0:0:6:210:-11.3472,-1.80618,0 dDocent_Contig_9074 15 . A C 154.185 . AB=0.139535;ABP=100.07;AC=1;AF=0.166667;AN=6;AO=16;CIGAR=1X;DP=161;DPB=161;DPRA=2.72;EPP=37.7539;EPPR=317.874;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=0.958621;PAO=0;PQA=0;PQR=0;PRO=0;QA=634;QR=5766;RO=145;RPL=0;RPP=37.7539;RPPR=317.874;RPR=16;RUN=1;SAF=16;SAP=37.7539;SAR=0;SRF=145;SRP=317.874;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:86:74,12:74:2931:12:472:-16.9401,0,-237.988 0/0:25:25,0:25:1015:0:0:0,-7.52575,-91.6427 0/0:50:46,4:46:1820:4:162:0,-0.0847535,-149.052 dDocent_Contig_9075 7 . T G 162.02 . AB=0.6875;ABP=7.89611;AC=1;AF=0.166667;AN=6;AO=13;CIGAR=1X;DP=39;DPB=39;DPRA=0;EPP=31.2394;EPPR=43.4331;GTI=0;LEN=1;MEANALT=1;MQM=23.6923;MQMR=56.8462;NS=3;NUMALT=1;ODDS=1.73472e-18;PAIRED=0;PAIREDR=0.923077;PAO=0;PQA=0;PQR=0;PRO=0;QA=472;QR=993;RO=26;RPL=0;RPP=31.2394;RPPR=59.4686;RPR=13;RUN=1;SAF=13;SAP=31.2394;SAR=0;SRF=24;SRP=43.4331;SRR=2;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:8:7,1:7:260:1:34:0,-0.141275,-18.4572 0/1:16:5,11:5:191:11:406:-18.0248,0,-12.7416 0/0:15:14,1:14:542:1:32:0,-1.6692,-46.2797 dDocent_Contig_9076 21 . A T 52.6146 . AB=0.138889;ABP=43.7857;AC=1;AF=0.166667;AN=6;AO=5;CIGAR=1X;DP=96;DPB=96;DPRA=1.2;EPP=13.8677;EPPR=200.614;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=195;QR=3600;RO=91;RPL=0;RPP=13.8677;RPPR=200.614;RPR=5;RUN=1;SAF=5;SAP=13.8677;SAR=0;SRF=91;SRP=200.614;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:51:51,0:51:2024:0:0:0,-15.3525,-182.349 0/0:9:9,0:9:362:0:0:0,-2.70927,-32.9437 0/1:36:31,5:31:1214:5:195:-7.08536,0,-98.6883 dDocent_Contig_9078 29 . G A 78.2468 . AB=0.125;ABP=71.4117;AC=1;AF=0.166667;AN=6;AO=9;CIGAR=1X;DP=104;DPB=104;DPRA=2.96667;EPP=22.5536;EPPR=209.3;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=57.8842;NS=3;NUMALT=1;ODDS=3.46945e-18;PAIRED=0;PAIREDR=0.715789;PAO=0;PQA=0;PQR=0;PRO=0;QA=368;QR=3780;RO=95;RPL=0;RPP=22.5536;RPPR=209.3;RPR=9;RUN=1;SAF=9;SAP=22.5536;SAR=0;SRF=95;SRP=209.3;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:56:49,7:49:1955:7:287:-9.34755,0,-154.559 0/0:15:15,0:15:582:0:0:0,-4.51545,-49.8968 0/0:33:31,2:31:1243:2:81:0,-2.24826,-103.256 dDocent_Contig_9079 31 . A T 125.397 . AB=0.21875;ABP=24.9965;AC=2;AF=0.333333;AN=6;AO=8;CIGAR=1X;DP=52;DPB=52;DPRA=0;EPP=20.3821;EPPR=98.5551;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=59.1818;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=0.909091;PAO=0;PQA=0;PQR=0;PRO=0;QA=318;QR=1712;RO=44;RPL=0;RPP=20.3821;RPPR=98.5551;RPR=8;RUN=1;SAF=8;SAP=20.3821;SAR=0;SRF=44;SRP=98.5551;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:20:16,4:16:618:4:158:-8.57988,0,-49.9207 0/1:12:9,3:9:350:3:119:-7.48265,0,-28.1997 0/0:20:19,1:19:744:1:41:0,-1.92603,-63.124 dDocent_Contig_9080 15 . A C 660.646 . AB=0.589744;ABP=5.73856;AC=2;AF=0.333333;AN=6;AO=23;CIGAR=1X4M;DP=50;DPB=50;DPRA=1.77273;EPP=52.9542;EPPR=55.1256;GTI=0;LEN=1;MEANALT=2;MQM=60;MQMR=60;NS=3;NUMALT=2;ODDS=0;PAIRED=0;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=895;QR=957;RO=24;RPL=0;RPP=52.9542;RPPR=55.1256;RPR=23;RUN=1;SAF=23;SAP=52.9542;SAR=0;SRF=24;SRP=55.1256;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|1:21:8,1,12:8:323:1,12:41,450:-34.4027,-33.4242,-59.7621,0,-23.2372,-23.0096 0|0:11:11,0,0:11:433:0,0:0,0:0,-3.31133,-39.3204,-3.31133,-39.3204,-39.3204 0|1:18:5,2,11:5:201:2,11:81,445:-35.1848,-30.0107,-45.9723,0,-9.88228,-13.251 dDocent_Contig_9081 1 . N A 129.442 . AB=0;ABP=0;AC=2;AF=1;AN=2;AO=4;CIGAR=1X;DP=4;DPB=4;DPRA=0;EPP=11.6962;EPPR=0;GTI=0;LEN=1;MEANALT=1;MQM=59.25;MQMR=0;NS=1;NUMALT=1;ODDS=7.37776;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=140;QR=0;RO=0;RPL=0;RPP=11.6962;RPPR=0;RPR=4;RUN=1;SAF=0;SAP=11.6962;SAR=4;SRF=0;SRP=0;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL ./.:.:.:.:.:.:.:. ./.:.:.:.:.:.:.:. 1/1:4:0,4:0:0:4:140:-12.9439,-1.20412,0 dDocent_Contig_9082 9 . G T 46.803 . AB=0.135135;ABP=45.7942;AC=2;AF=0.333333;AN=6;AO=5;CIGAR=1X;DP=75;DPB=75;DPRA=0.486842;EPP=13.8677;EPPR=155.013;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=194;QR=2686;RO=70;RPL=0;RPP=13.8677;RPPR=155.013;RPR=5;RUN=1;SAF=5;SAP=13.8677;SAR=0;SRF=70;SRP=155.013;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:38:38,0:38:1468:0:0:0,-11.4391,-132.396 0/1:11:10,1:10:366:1:39:-0.585235,0,-29.9712 0/1:26:22,4:22:852:4:155:-6.49866,0,-69.1757 dDocent_Contig_9083 9 . G A 40.7445 . AB=0.4;ABP=3.44459;AC=1;AF=0.166667;AN=6;AO=2;CIGAR=1X;DP=34;DPB=34;DPRA=0.344828;EPP=7.35324;EPPR=72.4974;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=78;QR=1220;RO=32;RPL=0;RPP=7.35324;RPPR=72.4974;RPR=2;RUN=1;SAF=2;SAP=7.35324;SAR=0;SRF=32;SRP=72.4974;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:18:18,0:18:695:0:0:0,-5.41854,-62.8843 0/1:5:3,2:3:110:2:78:-5.89832,0,-8.75446 0/0:11:11,0:11:415:0:0:0,-3.31133,-37.6982 dDocent_Contig_9084 159 . G T 202.388 . AB=0.207547;ABP=42.3836;AC=2;AF=0.333333;AN=6;AO=11;CIGAR=1X;DP=55;DPB=55;DPRA=13.25;EPP=26.8965;EPPR=98.5551;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=433;QR=1765;RO=44;RPL=11;RPP=26.8965;RPPR=98.5551;RPR=0;RUN=1;SAF=0;SAP=26.8965;SAR=11;SRF=0;SRP=98.5551;SRR=44;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:29:25,4:25:1005:4:157:-5.77781,0,-82.0159 0/0:2:2,0:2:81:0:0:0,-0.60206,-7.68573 0/1:24:17,7:17:679:7:276:-17.9835,0,-54.2141 dDocent_Contig_9085 21 . G A 271.474 . AB=0.254902;ABP=29.6215;AC=3;AF=0.5;AN=6;AO=13;CIGAR=1X;DP=51;DPB=51;DPRA=0;EPP=31.2394;EPPR=85.5263;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=521;QR=1509;RO=38;RPL=0;RPP=31.2394;RPPR=85.5263;RPR=13;RUN=1;SAF=13;SAP=31.2394;SAR=0;SRF=38;SRP=85.5263;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:25:20,5:20:797:5:199:-10.7626,0,-64.5214 0/1:6:4,2:4:159:2:76:-5.40808,0,-12.8862 0/1:20:14,6:14:553:6:246:-16.4995,0,-44.0918 dDocent_Contig_9086 18 . T C 308.442 . AB=0.255814;ABP=25.2805;AC=4;AF=0.666667;AN=6;AO=13;CIGAR=1X;DP=45;DPB=45;DPRA=0;EPP=31.2394;EPPR=72.4974;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=513;QR=1213;RO=32;RPL=0;RPP=31.2394;RPPR=72.4974;RPR=13;RUN=1;SAF=13;SAP=31.2394;SAR=0;SRF=32;SRP=72.4974;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:28:22,6:22:834:6:232:-12.815,0,-66.9486 1/1:2:0,2:0:0:2:82:-7.77968,-0.60206,0 0/1:15:10,5:10:379:5:199:-13.772,0,-29.948 dDocent_Contig_9089 1 . N T 170.473 . AB=0;ABP=0;AC=6;AF=1;AN=6;AO=5;CIGAR=1X;DP=5;DPB=5;DPRA=0;EPP=13.8677;EPPR=0;GTI=0;LEN=1;MEANALT=1;MQM=54.2;MQMR=0;NS=3;NUMALT=1;ODDS=1.69407e-21;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=173;QR=0;RO=0;RPL=0;RPP=13.8677;RPPR=0;RPR=5;RUN=1;SAF=0;SAP=13.8677;SAR=5;SRF=0;SRP=0;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 1/1:3:0,3:0:0:3:104:-9.69771,-0.90309,0 1/1:1:0,1:0:0:1:34:-3.39727,-0.30103,0 1/1:1:0,1:0:0:1:35:-3.47344,-0.30103,0 dDocent_Contig_9092 8 . A T 96.5958 . AB=0;ABP=0;AC=0;AF=0;AN=6;AO=2;CIGAR=1X1M4X2M1X3M1X3M1X;DP=25;DPB=25;DPRA=3.33333;EPP=7.35324;EPPR=35.5824;GTI=0;LEN=1;MEANALT=3;MQM=5;MQMR=60;NS=3;NUMALT=3;ODDS=0;PAIRED=0;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=80;QR=589;RO=15;RPL=0;RPP=7.35324;RPPR=35.5824;RPR=2;RUN=1;SAF=2;SAP=7.35324;SAR=0;SRF=15;SRP=35.5824;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|0:10:6,2,0,0:6:238:2,0,0:80,0,0:0,-1.60585,-20.7092,-1.80618,-21.3113,-21.5474,-1.80618,-21.3113,-21.5474,-21.5474 0|0:3:0,0,0,2:0:0:0,0,2:0,0,81:-7.21314,-7.21314,-7.21314,-7.21314,-7.21314,-7.21314,-0.60206,-0.60206,-0.60206,0 0|0:12:9,0,2,0:9:351:0,2,0:0,81,0:-3.9666,-6.67587,-35.5149,0,-28.8336,-28.2315,-6.67587,-35.5149,-28.8336,-35.5149 dDocent_Contig_9093 14 . T C 322.07 . AB=0.55;ABP=3.44459;AC=1;AF=0.166667;AN=6;AO=14;CIGAR=1X;DP=78;DPB=78;DPRA=19;EPP=33.4109;EPPR=141.985;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=55.4531;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=0.96875;PAO=0;PQA=0;PQR=0;PRO=0;QA=563;QR=2505;RO=64;RPL=0;RPP=33.4109;RPPR=141.985;RPR=14;RUN=1;SAF=14;SAP=33.4109;SAR=0;SRF=64;SRP=141.985;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:56:53,3:53:2076:3:122:0,-5.48519,-175.312 0/0:2:2,0:2:77:0:0:0,-0.60206,-1.32953 0/1:20:9,11:9:352:11:441:-34.0238,0,-25.9343 dDocent_Contig_9094 18 . G C 50.1552 . AB=0.142857;ABP=41.7866;AC=2;AF=0.333333;AN=6;AO=5;CIGAR=1X;DP=129;DPB=129;DPRA=0.18617;EPP=13.8677;EPPR=272.273;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=203;QR=4867;RO=124;RPL=0;RPP=13.8677;RPPR=272.273;RPR=5;RUN=1;SAF=5;SAP=13.8677;SAR=0;SRF=124;SRP=272.273;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:94:94,0:94:3679:0:0:0,-28.2968,-331.119 0/1:7:5,2:5:186:2:81:-5.57852,0,-14.9872 0/1:28:25,3:25:1002:3:122:-2.94365,0,-82.0463 dDocent_Contig_9096 98 . N A 62.6944 . AB=0;ABP=0;AC=2;AF=1;AN=2;AO=2;CIGAR=1X;DP=2;DPB=2;DPRA=0;EPP=7.35324;EPPR=0;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=0;NS=1;NUMALT=1;ODDS=5.99146;PAIRED=1;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=66;QR=0;RO=0;RPL=2;RPP=7.35324;RPPR=0;RPR=0;RUN=1;SAF=2;SAP=7.35324;SAR=0;SRF=0;SRP=0;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 1/1:2:0,2:0:0:2:66:-6.26836,-0.60206,0 ./.:.:.:.:.:.:.:. ./.:.:.:.:.:.:.:. dDocent_Contig_9097 16 . G C 118.757 . AB=0.206897;ABP=24.6501;AC=1;AF=0.166667;AN=6;AO=9;CIGAR=1X;DP=91;DPB=91;DPRA=3.63636;EPP=22.5536;EPPR=181.071;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=368;QR=3232;RO=82;RPL=0;RPP=22.5536;RPPR=181.071;RPR=9;RUN=1;SAF=9;SAP=22.5536;SAR=0;SRF=82;SRP=181.071;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:51:48,3:48:1887:3:123:0,-3.88774,-158.568 0/0:11:11,0:11:438:0:0:0,-3.31133,-39.774 0/1:29:23,6:23:907:6:245:-13.6996,0,-73.2049 dDocent_Contig_9098 64 . A G 485.284 . AB=0.291667;ABP=30.1537;AC=3;AF=0.5;AN=6;AO=21;CIGAR=1X;DP=72;DPB=72;DPRA=0;EPP=48.6112;EPPR=113.755;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=829;QR=2008;RO=51;RPL=21;RPP=48.6112;RPPR=113.755;RPR=0;RUN=1;SAF=21;SAP=48.6112;SAR=0;SRF=51;SRP=113.755;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:35:20,15:20:793:15:595:-43.3524,0,-61.1512 0/1:15:13,2:13:514:2:82:-3.26423,0,-42.0927 0/1:22:18,4:18:701:4:152:-7.42686,0,-56.7944 dDocent_Contig_9099 21 . G A 31.8661 . AB=0.102941;ABP=96.1281;AC=1;AF=0.166667;AN=6;AO=7;CIGAR=1X;DP=201;DPB=201;DPRA=1.02256;EPP=18.2106;EPPR=381.966;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=59.433;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=0.891753;PAO=0;PQA=0;PQR=0;PRO=0;QA=279;QR=7718;RO=194;RPL=0;RPP=18.2106;RPPR=424.276;RPR=7;RUN=1;SAF=7;SAP=18.2106;SAR=0;SRF=189;SRP=381.966;SRR=5;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:80:80,0:80:3213:0:0:0,-24.0824,-289.004 0/0:53:53,0:53:2103:0:0:0,-15.9546,-189.418 0/1:68:61,7:61:2402:7:279:-5.01023,0,-195.651 dDocent_Contig_9100 137 . T C 122.575 . AB=0.21875;ABP=24.9965;AC=2;AF=0.333333;AN=6;AO=7;CIGAR=1X;DP=58;DPB=58;DPRA=0.615385;EPP=18.2106;EPPR=113.755;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=274;QR=2015;RO=51;RPL=0;RPP=18.2106;RPPR=113.755;RPR=7;RUN=1;SAF=0;SAP=18.2106;SAR=7;SRF=0;SRP=113.755;SRR=51;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:26:26,0:26:1045:0:0:0,-7.82678,-94.3418 0/1:9:6,3:6:229:3:113:-7.82876,0,-18.2636 0/1:23:19,4:19:741:4:161:-7.95158,0,-60.085 dDocent_Contig_9101 17 . A G 813.756 . AB=0.518519;ABP=3.17115;AC=3;AF=0.5;AN=6;AO=28;CIGAR=1X;DP=54;DPB=54;DPRA=0;EPP=63.8115;EPPR=59.4686;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=3.46945e-18;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=1134;QR=1048;RO=26;RPL=0;RPP=63.8115;RPPR=59.4686;RPR=28;RUN=1;SAF=28;SAP=63.8115;SAR=0;SRF=26;SRP=59.4686;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:31:15,16:15:609:16:646:-49.1418,0,-45.8162 0/1:9:7,2:7:282:2:82:-5.07041,0,-23.0433 0/1:14:4,10:4:157:10:406:-32.6862,0,-10.2933 dDocent_Contig_9103 12 . G A 114.887 . 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A G 82.9576 . AB=0.4;ABP=3.87889;AC=1;AF=0.166667;AN=6;AO=4;CIGAR=1X;DP=26;DPB=26;DPRA=1.25;EPP=11.6962;EPPR=50.7827;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=142;QR=784;RO=22;RPL=0;RPP=11.6962;RPPR=50.7827;RPR=4;RUN=1;SAF=0;SAP=11.6962;SAR=4;SRF=0;SRP=50.7827;SRR=22;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:15:15,0:15:532:0:0:0,-4.51545,-48.2136 0/0:1:1,0:1:36:0:0:0,-0.30103,-3.59827 0/1:10:6,4:6:216:4:142:-10.1189,0,-16.7802 dDocent_Contig_9105 35 . C A 514.138 . AB=0.347826;ABP=12.2627;AC=4;AF=0.666667;AN=6;AO=19;CIGAR=1X;DP=49;DPB=49;DPRA=0;EPP=44.2683;EPPR=65.983;GTI=0;LEN=1;MEANALT=1.33333;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=753;QR=1152;RO=29;RPL=0;RPP=44.2683;RPPR=65.983;RPR=19;RUN=1;SAF=19;SAP=44.2683;SAR=0;SRF=29;SRP=65.983;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:25:12,13:12:474:13:516:-39.2601,0,-35.4778 1/1:3:0,3:0:0:3:116:-10.817,-0.90309,0 0/1:21:17,3:17:678:3:121:-4.85921,0,-54.9305 dDocent_Contig_9106 13 . G C 344.192 . AB=0.419355;ABP=4.76149;AC=2;AF=0.333333;AN=6;AO=13;CIGAR=1X;DP=35;DPB=35;DPRA=3.875;EPP=31.2394;EPPR=50.7827;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=0.692308;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=517;QR=874;RO=22;RPL=0;RPP=31.2394;RPPR=50.7827;RPR=13;RUN=1;SAF=13;SAP=31.2394;SAR=0;SRF=22;SRP=50.7827;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:19:12,7:12:479:7:279:-19.7611,0,-37.7369 0/0:4:4,0:4:155:0:0:0,-1.20412,-14.3251 0/1:12:6,6:6:240:6:238:-18.1809,0,-18.3628 dDocent_Contig_9108 47 . T G 109.438 . AB=0.571429;ABP=3.32051;AC=1;AF=0.166667;AN=6;AO=4;CIGAR=1X;DP=79;DPB=79;DPRA=0.194444;EPP=11.6962;EPPR=165.871;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=161;QR=2994;RO=75;RPL=0;RPP=11.6962;RPPR=165.871;RPR=4;RUN=1;SAF=4;SAP=11.6962;SAR=0;SRF=75;SRP=165.871;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:62:62,0:62:2472:0:0:0,-18.6639,-222.625 0/1:7:3,4:3:121:4:161:-12.7677,0,-9.17299 0/0:10:10,0:10:401:0:0:0,-3.0103,-36.449 dDocent_Contig_9109 12 . C T 285.301 . AB=0.208333;ABP=56.2114;AC=2;AF=0.333333;AN=6;AO=16;CIGAR=1X;DP=129;DPB=129;DPRA=0;EPP=37.7539;EPPR=248.387;GTI=0;LEN=1;MEANALT=1;MQM=59.25;MQMR=59.5752;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=0.99115;PAO=0;PQA=0;PQR=0;PRO=0;QA=630;QR=4574;RO=113;RPL=0;RPP=37.7539;RPPR=248.387;RPR=16;RUN=1;SAF=16;SAP=37.7539;SAR=0;SRF=113;SRP=248.387;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:56:44,12:44:1786:12:469:-25.6841,0,-141.474 0/1:16:13,3:13:522:3:120:-6.36887,0,-42.5079 0/0:57:56,1:56:2266:1:41:0,-13.0655,-200.003 dDocent_Contig_9111 16 . T C 77.4614 . AB=0.107383;ABP=202.509;AC=2;AF=0.333333;AN=6;AO=18;CIGAR=1X;DP=219;DPB=219;DPRA=0;EPP=26.6552;EPPR=422.277;GTI=0;LEN=1;MEANALT=1;MQM=45.5556;MQMR=52.4179;NS=3;NUMALT=1;ODDS=0;PAIRED=0;PAIREDR=0.621891;PAO=0;PQA=0;PQR=0;PRO=0;QA=720;QR=7990;RO=201;RPL=0;RPP=42.0968;RPPR=439.476;RPR=18;RUN=1;SAF=16;SAP=26.6552;SAR=2;SRF=199;SRP=422.277;SRR=2;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:118:107,11:107:4269:11:438:-2.5876,0,-317.072 0/1:31:26,5:26:1028:5:201:-8.64552,0,-79.473 0/0:70:68,2:68:2693:2:81:0,-13.7622,-216.294 dDocent_Contig_9112 11 . T A 139.768 . AB=0.195122;ABP=36.112;AC=2;AF=0.333333;AN=6;AO=9;CIGAR=1X;DP=60;DPB=60;DPRA=0;EPP=22.5536;EPPR=113.755;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=363;QR=2059;RO=51;RPL=0;RPP=22.5536;RPPR=113.755;RPR=9;RUN=1;SAF=9;SAP=22.5536;SAR=0;SRF=51;SRP=113.755;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:20:16,4:16:649:4:163:-9.03783,0,-52.7225 0/0:19:18,1:18:720:1:40:0,-1.72389,-61.1306 0/1:21:17,4:17:690:4:160:-8.4618,0,-56.1064 dDocent_Contig_9114 35 . T G 312.864 . AB=0.833333;ABP=14.5915;AC=1;AF=0.166667;AN=6;AO=11;CIGAR=1X;DP=37;DPB=37;DPRA=1.04167;EPP=26.8965;EPPR=59.4686;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=443;QR=1047;RO=26;RPL=0;RPP=26.8965;RPPR=59.4686;RPR=11;RUN=1;SAF=11;SAP=26.8965;SAR=0;SRF=26;SRP=59.4686;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:12:12,0:12:489:0:0:0,-3.61236,-44.3613 0/0:13:12,1:12:477:1:39:0,-0.0168255,-39.3844 0/1:12:2,10:2:81:10:404:-33.1077,0,-4.07337 dDocent_Contig_9115 79 . G A 556.186 . AB=0.451613;ABP=3.64073;AC=4;AF=0.666667;AN=6;AO=20;CIGAR=1X;DP=37;DPB=37;DPRA=0;EPP=46.4397;EPPR=39.9253;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=1.73472e-18;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=749;QR=612;RO=17;RPL=20;RPP=46.4397;RPPR=39.9253;RPR=0;RUN=1;SAF=20;SAP=46.4397;SAR=0;SRF=17;SRP=39.9253;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:19:9,10:9:341:10:386:-29.3776,0,-25.3258 1/1:6:0,6:0:0:6:218:-19.9707,-1.80618,0 0/1:12:8,4:8:271:4:145:-9.79311,0,-21.104 dDocent_Contig_9116 40 . T A 307.43 . AB=0.392857;ABP=5.80219;AC=4;AF=0.666667;AN=6;AO=12;CIGAR=1M1D1X;DP=29;DPB=25;DPRA=0;EPP=29.068;EPPR=39.9253;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=1.73472e-18;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=462;QR=638;RO=17;RPL=0;RPP=29.068;RPPR=39.9253;RPR=12;RUN=1;SAF=12;SAP=29.068;SAR=0;SRF=17;SRP=39.9253;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|1:18:10,8:10:373:8:308:-22.6619,0,-28.5017 1|1:1:0,1:0:0:1:38:-3.79727,-0.30103,0 0|1:10:7,3:7:265:3:116:-7.80598,0,-21.2002 dDocent_Contig_9117 139 . G A 46.0023 . AB=0.5;ABP=3.0103;AC=1;AF=0.166667;AN=6;AO=3;CIGAR=1X;DP=49;DPB=49;DPRA=0.27907;EPP=9.52472;EPPR=102.898;GTI=0;LEN=1;MEANALT=1;MQM=30;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=0;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=118;QR=1806;RO=46;RPL=0;RPP=9.52472;RPPR=102.898;RPR=3;RUN=1;SAF=0;SAP=9.52472;SAR=3;SRF=0;SRP=102.898;SRR=46;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:30:30,0:30:1188:0:0:0,-9.0309,-107.192 0/1:6:3,3:3:121:3:118:-6.42413,0,-9.47381 0/0:13:13,0:13:497:0:0:0,-3.91339,-45.06 dDocent_Contig_9120 188 . C T 130.635 . AB=0.3;ABP=9.95901;AC=1;AF=0.166667;AN=6;AO=6;CIGAR=1X;DP=30;DPB=30;DPRA=4;EPP=16.0391;EPPR=55.1256;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=225;QR=933;RO=24;RPL=6;RPP=16.0391;RPPR=55.1256;RPR=0;RUN=1;SAF=0;SAP=16.0391;SAR=6;SRF=0;SRP=55.1256;SRR=24;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:20:14,6:14:547:6:225:-14.5856,0,-43.5528 0/0:1:1,0:1:39:0:0:0,-0.30103,-3.89656 0/0:9:9,0:9:347:0:0:0,-2.70927,-31.5884 dDocent_Contig_9123 54 . T C 48.5155 . 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AB=0.126582;ABP=98.6925;AC=3;AF=0.5;AN=6;AO=10;CIGAR=1X3M1X1M1X11M;DP=116;DPB=116;DPRA=0;EPP=24.725;EPPR=48.6112;GTI=0;LEN=1;MEANALT=11;MQM=57.3;MQMR=60;NS=3;NUMALT=9;ODDS=0;PAIRED=0;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=392;QR=821;RO=21;RPL=0;RPP=24.725;RPPR=48.6112;RPR=10;RUN=1;SAF=10;SAP=24.725;SAR=0;SRF=21;SRP=48.6112;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|1:64:14,0,1,2,15,0,1,7,2,0:14:548:0,1,2,15,0,1,7,2,0:0,40,79,587,0,40,278,78,0:-44.0553,-48.2697,-93.3323,-44.9742,-90.0369,-89.7359,-41.7681,-86.8309,-83.5356,-86.2289,0,-45.0648,-41.7693,-38.5632,-40.5493,-48.2697,-93.3323,-90.0369,-86.8309,-45.0648,-93.3323,-44.9742,-90.0369,-86.7416,-83.5356,-41.7693,-90.0369,-89.7359,-25.3797,-70.4433,-67.1479,-63.9419,-22.1747,-70.4433,-67.1479,-68.3361,-41.9004,-86.9632,-83.6678,-80.4618,-38.6955,-86.9632,-83.6678,-64.0741,-86.3611,-48.2697,-93.3323,-90.0369,-86.8309,-45.0648,-93.3323,-90.0369,-70.4433,-86.9632,-93.3323 0|1:15:0,5,2,0,0,0,4,3,0,0:0:0:5,2,0,0,0,4,3,0,0:197,77,0,0,0,154,114,0,0:-28.6921,-12.4804,-10.9752,-22.3701,-6.15745,-21.7681,-28.6921,-12.4804,-22.3701,-28.6921,-28.6921,-12.4804,-22.3701,-28.6921,-28.6921,-28.6921,-12.4804,-22.3701,-28.6921,-28.6921,-28.6921,-16.2129,0,-9.89138,-16.2129,-16.2129,-16.2129,-15.0088,-19.3971,-3.18498,-13.0755,-19.3971,-19.3971,-19.3971,-6.91954,-18.494,-28.6921,-12.4804,-22.3701,-28.6921,-28.6921,-28.6921,-16.2129,-19.3971,-28.6921,-28.6921,-12.4804,-22.3701,-28.6921,-28.6921,-28.6921,-16.2129,-19.3971,-28.6921,-28.6921 0|1:37:7,0,4,3,6,4,0,0,2,4:7:273:0,4,3,6,4,0,0,2,4:0,157,116,238,160,0,0,80,155:-17.494,-19.6012,-42.0476,-6.69895,-29.1471,-27.943,-10.0701,-32.5177,-19.6166,-31.6146,0,-22.4496,-9.5475,-12.9186,-20.6434,-7.89017,-30.3373,-17.4364,-20.8072,-10.7385,-29.1331,-19.6012,-42.0476,-29.1471,-32.5177,-22.4496,-30.3373,-42.0476,-19.6012,-42.0476,-29.1471,-32.5177,-22.4496,-30.3373,-42.0476,-42.0476,-13.0604,-35.5077,-22.6067,-25.9774,-15.9088,-23.7971,-35.5077,-35.5077,-34.9056,-7.05578,-29.5036,-16.6024,-19.9732,-9.90428,-17.7931,-29.5036,-29.5036,-22.9633,-28.2995 dDocent_Contig_9125 15 . 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AB=0.370787;ABP=15.9171;AC=3;AF=0.5;AN=6;AO=33;CIGAR=1X;DP=89;DPB=89;DPRA=0;EPP=74.6689;EPPR=122.441;GTI=0;LEN=1;MEANALT=1.33333;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=6.93889e-18;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=1259;QR=2180;RO=55;RPL=0;RPP=74.6689;RPPR=122.441;RPR=33;RUN=1;SAF=33;SAP=74.6689;SAR=0;SRF=55;SRP=122.441;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:76:45,30:45:1781:30:1137:-79.7764,0,-137.691 0/1:5:4,1:4:158:1:40:-2.49053,0,-13.0948 0/1:8:6,2:6:241:2:82:-5.37144,0,-19.6584 dDocent_Contig_9128 21 . A T 605.92 . AB=0.478261;ABP=3.19912;AC=3;AF=0.5;AN=6;AO=22;CIGAR=1X;DP=46;DPB=46;DPRA=0;EPP=50.7827;EPPR=55.1256;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=3.46945e-18;PAIRED=1;PAIREDR=0.875;PAO=0;PQA=0;PQR=0;PRO=0;QA=876;QR=968;RO=24;RPL=0;RPP=50.7827;RPPR=55.1256;RPR=22;RUN=1;SAF=22;SAP=50.7827;SAR=0;SRF=24;SRP=55.1256;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:23:9,14:9:363:14:558:-43.6385,0,-26.1101 0/1:3:2,1:2:82:1:41:-3.19148,0,-6.87659 0/1:20:13,7:13:523:7:277:-19.2757,0,-41.3954 dDocent_Contig_9129 11 . A G 115.488 . 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AB=0.206897;ABP=46.29;AC=2;AF=0.333333;AN=6;AO=12;CIGAR=1X3M5X1M1X2M1X;DP=62;DPB=62;DPRA=7.25;EPP=29.068;EPPR=109.412;GTI=0;LEN=1;MEANALT=1.5;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=430;QR=1861;RO=49;RPL=12;RPP=29.068;RPPR=109.412;RPR=0;RUN=1;SAF=0;SAP=29.068;SAR=12;SRF=0;SRP=109.412;SRR=49;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|1:42:34,7:34:1292:7:239:-9.10477,0,-103.811 0|0:4:4,0:4:145:0:0:0,-1.20412,-13.4037 0|1:16:11,5:11:424:5:191:-12.7398,0,-33.6932 dDocent_Contig_9133 9 . C T 294.478 . AB=0.55;ABP=3.44459;AC=2;AF=0.333333;AN=6;AO=11;CIGAR=1X;DP=27;DPB=27;DPRA=1.42857;EPP=26.8965;EPPR=37.7539;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=0.9375;PAO=0;PQA=0;PQR=0;PRO=0;QA=425;QR=618;RO=16;RPL=0;RPP=26.8965;RPPR=37.7539;RPR=11;RUN=1;SAF=11;SAP=26.8965;SAR=0;SRF=16;SRP=37.7539;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:13:7,6:7:273:6:230:-17.1535,0,-21.0246 0/1:7:2,5:2:74:5:195:-15.817,0,-4.91822 0/0:7:7,0:7:271:0:0:0,-2.10721,-24.7563 dDocent_Contig_9134 13 . C T 56.091 . AB=0.122449;ABP=63.6786;AC=1;AF=0.166667;AN=6;AO=6;CIGAR=1X;DP=68;DPB=68;DPRA=5.15789;EPP=16.0391;EPPR=137.642;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=239;QR=2502;RO=62;RPL=0;RPP=16.0391;RPPR=137.642;RPR=6;RUN=1;SAF=6;SAP=16.0391;SAR=0;SRF=62;SRP=137.642;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:49:43,6:43:1736:6:239:-7.13196,0,-141.701 0/0:7:7,0:7:286:0:0:0,-2.10721,-26.1148 0/0:12:12,0:12:480:0:0:0,-3.61236,-43.5504 dDocent_Contig_9136 30 . G T 215.942 . AB=0.4;ABP=4.74748;AC=1;AF=0.166667;AN=6;AO=8;CIGAR=1X1M1X;DP=49;DPB=49;DPRA=1.37931;EPP=20.3821;EPPR=92.0407;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=0;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=323;QR=1581;RO=41;RPL=0;RPP=20.3821;RPPR=92.0407;RPR=8;RUN=1;SAF=8;SAP=20.3821;SAR=0;SRF=41;SRP=92.0407;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|0:25:25,0:25:952:0:0:0,-7.52575,-85.9902 0|0:4:4,0:4:160:0:0:0,-1.20412,-14.784 0|1:20:12,8:12:469:8:323:-23.418,0,-36.5404 dDocent_Contig_9137 34 . A C 2099.15 . AB=0.150857;ABP=929.475;AC=3;AF=0.5;AN=6;AO=132;CIGAR=1X;DP=875;DPB=875;DPRA=0;EPP=289.645;EPPR=1564.3;GTI=0;LEN=1;MEANALT=3;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=0.893939;PAIREDR=0.856745;PAO=0;PQA=0;PQR=0;PRO=0;QA=5246;QR=28424;RO=719;RPL=0;RPP=289.645;RPPR=1564.3;RPR=132;RUN=1;SAF=132;SAP=289.645;SAR=0;SRF=719;SRP=1564.3;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:479:388,81:388:15304:81:3225:-148.712,0,-1234.62 0/1:152:127,19:127:4995:19:758:-24.2069,0,-405.132 0/1:244:204,32:204:8125:32:1263:-42.5184,0,-659.399 dDocent_Contig_9138 107 . N T 334.771 . AB=0;ABP=0;AC=4;AF=1;AN=4;AO=12;CIGAR=1X;DP=12;DPB=12;DPRA=0;EPP=29.068;EPPR=0;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=0;NS=2;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=363;QR=0;RO=0;RPL=0;RPP=29.068;RPPR=0;RPR=12;RUN=1;SAF=0;SAP=29.068;SAR=12;SRF=0;SRP=0;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 1/1:10:0,10:0:0:10:325:-29.566,-3.0103,0 ./.:.:.:.:.:.:.:. 1/1:2:0,2:0:0:2:38:-3.60948,-0.60206,0 dDocent_Contig_9139 12 . A T 1039.08 . AB=0.327103;ABP=30.793;AC=0;AF=0;AN=6;AO=35;CIGAR=1X1M1X3M1X;DP=110;DPB=110;DPRA=0;EPP=79.0118;EPPR=63.8115;GTI=0;LEN=1;MEANALT=3.5;MQM=12;MQMR=60;NS=3;NUMALT=3;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=1381;QR=1090;RO=28;RPL=0;RPP=79.0118;RPPR=63.8115;RPR=35;RUN=1;SAF=35;SAP=79.0118;SAR=0;SRF=28;SRP=63.8115;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|0:78:18,31,9,20:18:711:31,9,20:1221,347,817:-62.072,-43.5114,-92.6826,-38.9771,-73.5272,-94.8156,0,-34.5931,-30.0562,-52.5517 0|0:3:0,0,1,2:0:0:0,1,2:0,39,75:-9.72839,-9.72839,-9.72839,-6.51753,-6.51753,-6.2165,-3.59553,-3.59553,0,-2.99347 0|0:29:10,4,2,12:10:379:4,2,12:160,79,491:-37.6163,-37.5736,-67.4284,-34.12,-62.1316,-64.6022,0,-28.1004,-24.6412,-27.5395 dDocent_Contig_9140 209 . N G 151.094 . AB=0;ABP=0;AC=4;AF=1;AN=4;AO=4;CIGAR=1X;DP=4;DPB=4;DPRA=0;EPP=11.6962;EPPR=0;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=0;NS=2;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=156;QR=0;RO=0;RPL=4;RPP=11.6962;RPPR=0;RPR=0;RUN=1;SAF=0;SAP=11.6962;SAR=4;SRF=0;SRP=0;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 1/1:3:0,3:0:0:3:117:-10.9104,-0.90309,0 ./.:.:.:.:.:.:.:. 1/1:1:0,1:0:0:1:39:-3.89656,-0.30103,0 dDocent_Contig_9142 10 . G A 121.767 . AB=0.194444;ABP=32.2045;AC=2;AF=0.333333;AN=6;AO=7;CIGAR=1X;DP=44;DPB=44;DPRA=2.25;EPP=18.2106;EPPR=83.3548;GTI=0;LEN=1;MEANALT=1;MQM=58.7143;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=0;PAIREDR=0.702703;PAO=0;PQA=0;PQR=0;PRO=0;QA=281;QR=1472;RO=37;RPL=0;RPP=18.2106;RPPR=83.3548;RPR=7;RUN=1;SAF=7;SAP=18.2106;SAR=0;SRF=37;SRP=83.3548;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:16:11,5:11:442:5:201:-13.6497,0,-35.3185 0/1:20:18,2:18:717:2:80:-1.56245,0,-58.8368 0/0:8:8,0:8:313:0:0:0,-2.40824,-28.5312 dDocent_Contig_9143 18 . G A 375.832 . AB=0.394737;ABP=6.66752;AC=2;AF=0.333333;AN=6;AO=15;CIGAR=1X;DP=49;DPB=49;DPRA=1.72727;EPP=35.5824;EPPR=76.8404;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=576;QR=1322;RO=34;RPL=0;RPP=35.5824;RPPR=76.8404;RPR=15;RUN=1;SAF=15;SAP=35.5824;SAR=0;SRF=34;SRP=76.8404;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:19:12,7:12:451:7:251:-17.2062,0,-35.2075 0/1:19:11,8:11:433:8:325:-23.8999,0,-33.5995 0/0:11:11,0:11:438:0:0:0,-3.31133,-39.773 dDocent_Contig_9144 72 . G A 65.7901 . AB=0.130435;ABP=84.8654;AC=2;AF=0.333333;AN=6;AO=9;CIGAR=1X;DP=76;DPB=76;DPRA=4.92857;EPP=22.5536;EPPR=148.499;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=335;QR=2368;RO=67;RPL=9;RPP=22.5536;RPPR=148.499;RPR=0;RUN=1;SAF=9;SAP=22.5536;SAR=0;SRF=67;SRP=148.499;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:60:53,7:53:1863:7:261:-5.78455,0,-149.861 0/0:7:7,0:7:270:0:0:0,-2.10721,-24.6653 0/1:9:7,2:7:235:2:74:-4.31661,0,-18.768 dDocent_Contig_9145 9 . C T 168.552 . AB=0.35;ABP=6.91895;AC=1;AF=0.25;AN=4;AO=7;CIGAR=1X;DP=25;DPB=25;DPRA=4;EPP=18.2106;EPPR=42.0968;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=2;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=269;QR=688;RO=18;RPL=0;RPP=18.2106;RPPR=42.0968;RPR=7;RUN=1;SAF=7;SAP=18.2106;SAR=0;SRF=18;SRP=42.0968;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:20:13,7:13:499:7:269:-18.5541,0,-39.2369 ./.:.:.:.:.:.:.:. 0/0:5:5,0:5:189:0:0:0,-1.50515,-17.3758 dDocent_Contig_9146 28 . C T 354.068 . AB=0.6;ABP=4.74748;AC=2;AF=0.333333;AN=6;AO=12;CIGAR=1X;DP=35;DPB=35;DPRA=0.666667;EPP=29.068;EPPR=52.9542;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=491;QR=916;RO=23;RPL=0;RPP=29.068;RPPR=52.9542;RPR=12;RUN=1;SAF=12;SAP=29.068;SAR=0;SRF=23;SRP=52.9542;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:16:6,10:6:245:10:409:-32.3541,0,-17.613 0/0:15:15,0:15:591:0:0:0,-4.51545,-53.5262 0/1:4:2,2:2:80:2:82:-6.57556,0,-6.38767 dDocent_Contig_9147 9 . C G 98.1705 . AB=0.5;ABP=3.0103;AC=1;AF=0.166667;AN=6;AO=4;CIGAR=1X;DP=66;DPB=66;DPRA=0.275862;EPP=11.6962;EPPR=137.642;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=152;QR=2392;RO=62;RPL=0;RPP=11.6962;RPPR=137.642;RPR=4;RUN=1;SAF=4;SAP=11.6962;SAR=0;SRF=62;SRP=137.642;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:32:32,0:32:1236:0:0:0,-9.63296,-111.532 0/1:8:4,4:4:156:4:152:-11.641,0,-12.009 0/0:26:26,0:26:1000:0:0:0,-7.82678,-90.3112 dDocent_Contig_9148 108 . A T 37.2113 . AB=0.428571;ABP=3.32051;AC=1;AF=0.166667;AN=6;AO=4;CIGAR=1X;DP=27;DPB=27;DPRA=1.42857;EPP=11.6962;EPPR=52.9542;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=116;QR=746;RO=23;RPL=0;RPP=11.6962;RPPR=52.9542;RPR=4;RUN=1;SAF=0;SAP=11.6962;SAR=4;SRF=0;SRP=52.9542;SRR=23;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:13:12,1:12:401:1:34:0,-0.514479,-33.0145 0/1:7:4,3:4:126:3:82:-5.5445,0,-9.54507 0/0:7:7,0:7:219:0:0:0,-2.10721,-20.0181 dDocent_Contig_9149 7 . T C 4131.95 . AB=0.22093;ABP=468.412;AC=3;AF=0.5;AN=6;AO=152;CIGAR=1X6M;DP=688;DPB=688;DPRA=0;EPP=333.074;EPPR=350.446;GTI=0;LEN=1;MEANALT=18.6667;MQM=52.2566;MQMR=59.9125;NS=3;NUMALT=6;ODDS=0;PAIRED=1;PAIREDR=0.99375;PAO=0;PQA=0;PQR=0;PRO=0;QA=5813;QR=6165;RO=160;RPL=0;RPP=333.074;RPPR=350.446;RPR=152;RUN=1;SAF=152;SAP=333.074;SAR=0;SRF=160;SRP=350.446;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|1:395:98,4,12,92,16,46,48:98:3768:4,12,92,16,46,48:150,461,3530,618,1818,1886:-253.353,-271.32,-579.443,-246.455,-544.249,-552.17,0,-297.794,-272.93,-281.633,-232.096,-529.889,-505.025,-258.57,-536.607,-133.254,-431.049,-406.184,-159.729,-391.825,-428.735,-134.659,-432.452,-407.588,-161.133,-393.229,-294.388,-429.537 0|1:78:20,1,3,21,0,19,9:20:780:1,3,21,0,19,9:40,113,797,0,759,329:-58.2626,-61.2553,-125.039,-55.3424,-116.399,-118.523,0,-61.0562,-55.1435,-57.7624,-64.2832,-125.34,-119.427,-64.084,-128.368,-1.98338,-63.0435,-57.1304,-1.78677,-66.0714,-60.3519,-37.4061,-98.4621,-92.5492,-37.208,-101.49,-39.1938,-98.7807 0|1:215:42,11,20,39,11,10,24:42:1617:11,20,39,11,10,24:430,757,1486,420,403,958:-107.099,-86.9624,-216.417,-60.9049,-160.891,-187.65,0,-99.9867,-73.9294,-121.026,-85.2831,-185.269,-159.212,-98.3075,-214.738,-86.523,-186.509,-160.452,-99.5474,-184.83,-216.279,-40.8367,-140.824,-114.766,-53.8614,-139.145,-140.385,-166.379 dDocent_Contig_9150 109 . C T 34.8878 . AB=0.2;ABP=14.7363;AC=1;AF=0.25;AN=4;AO=3;CIGAR=1X;DP=21;DPB=21;DPRA=2.5;EPP=9.52472;EPPR=42.0968;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=2;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=104;QR=605;RO=18;RPL=0;RPP=9.52472;RPPR=42.0968;RPR=3;RUN=1;SAF=0;SAP=9.52472;SAR=3;SRF=0;SRP=42.0968;SRR=18;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:15:12,3:12:401:3:104:-5.18757,0,-31.8969 ./.:.:.:.:.:.:.:. 0/0:6:6,0:6:204:0:0:0,-1.80618,-18.6934 dDocent_Contig_9151 83 . C A 186.334 . AB=0.24;ABP=32.3686;AC=2;AF=0.333333;AN=6;AO=12;CIGAR=1X;DP=72;DPB=72;DPRA=1.13636;EPP=29.068;EPPR=131.127;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=3.46945e-18;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=406;QR=1972;RO=59;RPL=12;RPP=29.068;RPPR=131.127;RPR=0;RUN=1;SAF=12;SAP=29.068;SAR=0;SRF=59;SRP=131.127;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:43:35,8:35:1176:8:268:-11.5031,0,-93.1944 0/1:7:3,4:3:103:4:138:-10.6532,0,-7.50276 0/0:22:21,0:21:693:0:0:0,-6.32163,-62.4944 dDocent_Contig_9152 33 . G A 222.86 . AB=0.210526;ABP=44.4969;AC=2;AF=0.333333;AN=6;AO=12;CIGAR=1X;DP=62;DPB=62;DPRA=5.7;EPP=29.068;EPPR=111.584;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=469;QR=1977;RO=50;RPL=0;RPP=29.068;RPPR=111.584;RPR=12;RUN=1;SAF=12;SAP=29.068;SAR=0;SRF=50;SRP=111.584;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:42:32,10:32:1259:10:390:-22.8122,0,-100.938 0/0:5:5,0:5:194:0:0:0,-1.50515,-17.832 0/1:15:13,2:13:524:2:79:-2.98179,0,-42.9903 dDocent_Contig_9153 8 . A G 309.924 . AB=0.583333;ABP=3.73412;AC=1;AF=0.166667;AN=6;AO=8;CIGAR=2X;DP=44;DPB=44;DPRA=0;EPP=20.3821;EPPR=63.8115;GTI=0;LEN=1;MEANALT=2;MQM=60;MQMR=60;NS=3;NUMALT=2;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=297;QR=1065;RO=28;RPL=0;RPP=20.3821;RPPR=63.8115;RPR=8;RUN=1;SAF=8;SAP=20.3821;SAR=0;SRF=28;SRP=63.8115;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|0:21:19,1,0:19:724:1,0:38,0:0,-2.60802,-61.6885,-5.71957,-61.9896,-65.106 0|0:11:6,0,5:6:230:0,5:0,191:-14.2472,-16.0534,-34.9318,0,-19.2607,-17.7556 0|1:12:3,7,2:3:111:7,2:259,78:-20.2678,0,-6.96123,-14.7547,-2.64873,-23.233 dDocent_Contig_9154 11 . A G 89.9231 . AB=0.155556;ABP=49.3833;AC=2;AF=0.333333;AN=6;AO=7;CIGAR=1X;DP=50;DPB=50;DPRA=4.5;EPP=18.2106;EPPR=96.3836;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=3.46945e-18;PAIRED=0;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=281;QR=1703;RO=43;RPL=0;RPP=18.2106;RPPR=96.3836;RPR=7;RUN=1;SAF=7;SAP=18.2106;SAR=0;SRF=43;SRP=96.3836;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:31:27,4:27:1081:4:162:-5.63503,0,-88.2453 0/0:5:5,0:5:189:0:0:0,-1.50515,-17.3726 0/1:14:11,3:11:433:3:119:-6.88008,0,-35.1073 dDocent_Contig_9155 107 . N C 292.879 . AB=0;ABP=0;AC=4;AF=1;AN=4;AO=10;CIGAR=1X;DP=11;DPB=11;DPRA=0;EPP=24.725;EPPR=0;GTI=0;LEN=1;MEANALT=1.5;MQM=38.2;MQMR=0;NS=2;NUMALT=1;ODDS=0;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=332;QR=0;RO=0;RPL=0;RPP=24.725;RPPR=0;RPR=10;RUN=1;SAF=0;SAP=24.725;SAR=10;SRF=0;SRP=0;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 1/1:10:0,9:0:0:9:298:-25.705,-2.70927,0 ./.:.:.:.:.:.:.:. 1/1:1:0,1:0:0:1:34:-3.28071,-0.30103,0 dDocent_Contig_9156 9 . C T 539.557 . AB=0.0571429;ABP=181.878;AC=0;AF=0;AN=6;AO=6;CIGAR=1X3M1X2M;DP=116;DPB=116;DPRA=0;EPP=16.0391;EPPR=141.985;GTI=0;LEN=1;MEANALT=3.5;MQM=16;MQMR=60;NS=3;NUMALT=4;ODDS=0;PAIRED=0;PAIREDR=0.828125;PAO=0;PQA=0;PQR=0;PRO=0;QA=96;QR=2471;RO=64;RPL=0;RPP=16.0391;RPPR=141.985;RPR=6;RUN=1;SAF=6;SAP=16.0391;SAR=0;SRF=64;SRP=141.985;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|0:75:37,4,8,18,8:37:1423:4,8,18,8:64,319,716,205:-45.8552,-53.5201,-169.176,-43.6333,-157.018,-158.088,0,-113.46,-103.576,-111.519,-43.1272,-156.513,-146.63,-103.07,-157.583 0|0:30:22,2,0,2,4:22:853:2,0,2,4:32,0,77,109:-0.899818,-5.8144,-75.3709,-7.52248,-75.973,-77.7033,-1.58519,-70.075,-71.8042,-71.2021,0,-68.4692,-70.1956,-64.2977,-68.9915 0|0:11:5,0,0,4,2:5:195:0,0,4,2:0,0,161,44:-11.6117,-13.1169,-29.175,-13.1169,-29.175,-29.175,0,-16.1718,-16.1718,-14.9677,-10.3663,-26.3931,-26.3931,-13.4103,-25.7911 dDocent_Contig_9157 139 . T C 133.123 . AB=0.149425;ABP=95.8844;AC=2;AF=0.333333;AN=6;AO=13;CIGAR=1X;DP=95;DPB=95;DPRA=5.4375;EPP=23.2217;EPPR=181.071;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=6.93889e-18;PAIRED=0.846154;PAIREDR=0.97561;PAO=0;PQA=0;PQR=0;PRO=0;QA=470;QR=2834;RO=82;RPL=0;RPP=31.2394;RPPR=181.071;RPR=13;RUN=1;SAF=1;SAP=23.2217;SAR=12;SRF=0;SRP=181.071;SRR=82;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:77:69,8:69:2384:8:285:-2.81525,0,-191.636 0/0:8:8,0:8:273:0:0:0,-2.40824,-24.9016 0/1:10:5,5:5:177:5:185:-13.9984,0,-13.2667 dDocent_Contig_9158 182 . G A 66.3095 . 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AB=0.671429;ABP=20.8784;AC=3;AF=0.5;AN=6;AO=47;CIGAR=1X;DP=70;DPB=70;DPRA=0;EPP=105.07;EPPR=52.9542;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=0.913043;PAO=0;PQA=0;PQR=0;PRO=0;QA=1866;QR=850;RO=23;RPL=0;RPP=105.07;RPPR=52.9542;RPR=47;RUN=1;SAF=47;SAP=105.07;SAR=0;SRF=23;SRP=52.9542;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:55:15,40:15:563:40:1593:-127.047,0,-34.4459 0/1:4:2,2:2:68:2:77:-6.10408,0,-5.2533 0/1:11:6,5:6:219:5:196:-14.7026,0,-16.7511 dDocent_Contig_9161 7 . T G 2466.17 . 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T C 32.4675 . AB=0.222222;ABP=9.04217;AC=1;AF=0.166667;AN=6;AO=2;CIGAR=1X;DP=57;DPB=57;DPRA=0.375;EPP=7.35324;EPPR=122.441;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=82;QR=2191;RO=55;RPL=2;RPP=7.35324;RPPR=122.441;RPR=0;RUN=1;SAF=2;SAP=7.35324;SAR=0;SRF=55;SRP=122.441;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:30:30,0:30:1176:0:0:0,-9.0309,-106.12 0/1:9:7,2:7:282:2:82:-5.07041,0,-23.0437 0/0:18:18,0:18:733:0:0:0,-5.41854,-66.2926 dDocent_Contig_9165 127 . C T 218.368 . AB=0.461538;ABP=3.17734;AC=3;AF=0.5;AN=6;AO=8;CIGAR=1X;DP=22;DPB=22;DPRA=1.07143;EPP=20.3821;EPPR=33.4109;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=295;QR=515;RO=14;RPL=0;RPP=20.3821;RPPR=33.4109;RPR=8;RUN=1;SAF=0;SAP=20.3821;SAR=8;SRF=0;SRP=33.4109;SRR=14;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:13:7,6:7:259:6:221:-16.3334,0,-19.7527 1/1:2:0,2:0:0:2:74:-7.02588,-0.60206,0 0/0:7:7,0:7:256:0:0:0,-2.10721,-23.393 dDocent_Contig_9166 14 . G A 167.823 . 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AB=0.451613;ABP=3.64073;AC=2;AF=0.333333;AN=6;AO=14;CIGAR=1X;DP=37;DPB=37;DPRA=2.58333;EPP=33.4109;EPPR=52.9542;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=558;QR=932;RO=23;RPL=0;RPP=33.4109;RPPR=52.9542;RPR=14;RUN=1;SAF=14;SAP=33.4109;SAR=0;SRF=23;SRP=52.9542;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:14:10,4:10:408:4:164:-10.9355,0,-32.8662 0/0:6:6,0:6:244:0:0:0,-1.80618,-22.3388 0/1:17:7,10:7:280:10:394:-30.6972,0,-20.4531 dDocent_Contig_9168 86 . C G 1841.04 . AB=0.589744;ABP=11.1951;AC=3;AF=0.5;AN=6;AO=69;CIGAR=1X2M1X;DP=117;DPB=117;DPRA=0;EPP=152.842;EPPR=105.07;GTI=0;LEN=1;MEANALT=1.33333;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=2486;QR=1632;RO=47;RPL=69;RPP=152.842;RPPR=105.07;RPR=0;RUN=1;SAF=69;SAP=152.842;SAR=0;SRF=47;SRP=105.07;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|1:78:31,46:31:1096:46:1664:-126.668,0,-75.5708 0|1:15:2,13:2:74:13:474:-38.4858,0,-2.51043 0|1:24:14,10:14:462:10:348:-24.431,0,-34.6704 dDocent_Contig_9169 11 . G A 4103.95 . AB=0.104294;ABP=224.7;AC=1;AF=0.166667;AN=6;AO=17;CIGAR=1X1M1X;DP=163;DPB=163;DPRA=0;EPP=39.9253;EPPR=38.1882;GTI=0;LEN=1;MEANALT=2.33333;MQM=60;MQMR=59.75;NS=3;NUMALT=2;ODDS=0;PAIRED=1;PAIREDR=0.95;PAO=0;PQA=0;PQR=0;PRO=0;QA=675;QR=788;RO=20;RPL=0;RPP=39.9253;RPPR=46.4397;RPR=17;RUN=1;SAF=17;SAP=39.9253;SAR=0;SRF=19;SRP=38.1882;SRR=1;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 1|0:75:6,10,58:6:240:10,58:396,2311:-200.822,-170.035,-186.795,-12.8186,0,-15.1299 0|0:20:3,2,15:3:105:2,15:79,610:-49.4233,-43.8268,-51.7519,0,-1.99068,-3.99418 0|0:68:11,5,52:11:443:5,52:200,2056:-165.67,-152.506,-187.515,0,-20.04,-20.8608 dDocent_Contig_9170 118 . C T 76.3599 . AB=0.3125;ABP=7.89611;AC=2;AF=0.5;AN=4;AO=5;CIGAR=1X;DP=16;DPB=16;DPRA=0;EPP=13.8677;EPPR=26.8965;GTI=0;LEN=1;MEANALT=1;MQM=43;MQMR=60;NS=2;NUMALT=1;ODDS=0;PAIRED=0;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=175;QR=382;RO=11;RPL=0;RPP=13.8677;RPPR=26.8965;RPR=5;RUN=1;SAF=0;SAP=13.8677;SAR=5;SRF=0;SRP=26.8965;SRR=11;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL ./.:.:.:.:.:.:.:. 0/1:8:5,3:5:174:3:105:-7.21291,0,-13.5937 0/1:8:6,2:6:208:2:70:-4.1204,0,-16.6514 dDocent_Contig_9171 39 . G A 57.5239 . AB=0.25;ABP=9.52472;AC=1;AF=0.166667;AN=6;AO=4;CIGAR=1X;DP=38;DPB=38;DPRA=18.5;EPP=11.6962;EPPR=76.8404;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=161;QR=1350;RO=34;RPL=0;RPP=11.6962;RPPR=76.8404;RPR=4;RUN=1;SAF=4;SAP=11.6962;SAR=0;SRF=34;SRP=76.8404;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:25:24,1:24:958:1:41:0,-3.43118,-82.42 0/0:1:1,0:1:37:0:0:0,-0.30103,-3.69783 0/1:12:9,3:9:355:3:120:-7.57554,0,-28.6984 dDocent_Contig_9172 135 . G T 54.3219 . AB=0.129032;ABP=40.0654;AC=1;AF=0.166667;AN=6;AO=5;CIGAR=1X3M1X;DP=66;DPB=66;DPRA=1.15;EPP=13.8677;EPPR=109.412;GTI=0;LEN=1;MEANALT=3.5;MQM=60;MQMR=60;NS=3;NUMALT=3;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=192;QR=1913;RO=49;RPL=0;RPP=13.8677;RPPR=109.412;RPR=5;RUN=1;SAF=0;SAP=13.8677;SAR=5;SRF=0;SRP=109.412;SRR=49;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|1:31:19,3,4,4:19:746:3,4,4:117,154,146:-6.9273,-3.02619,-63.4834,0,-51.7422,-60.1559,-0.729534,-52.4651,-49.4389,-60.8784 0|0:15:12,1,1,1:12:461:1,1,1:34,38,41:0,-0.872604,-38.4021,-0.494164,-35.587,-38.0407,-0.21173,-35.3172,-34.9556,-37.771 0|0:20:18,0,0,0:18:706:0,0,0:0,0,0:0,-5.41854,-63.4622,-5.41854,-63.4622,-63.4622,-5.41854,-63.4622,-63.4622,-63.4622 dDocent_Contig_9173 9 . C T 100.772 . 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AB=0.307692;ABP=23.8898;AC=2;AF=0.333333;AN=6;AO=20;CIGAR=1X;DP=69;DPB=69;DPRA=8.125;EPP=38.1882;EPPR=109.412;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=0.3;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=801;QR=1953;RO=49;RPL=0;RPP=46.4397;RPPR=109.412;RPR=20;RUN=1;SAF=19;SAP=38.1882;SAR=1;SRF=49;SRP=109.412;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:55:39,16:39:1557:16:644:-41.7364,0,-123.815 0/1:10:6,4:6:239:4:157:-11.4981,0,-18.8741 0/0:4:4,0:4:157:0:0:0,-1.20412,-14.5079 dDocent_Contig_9175 51 . A G 517.048 . AB=0.68;ABP=10.0459;AC=2;AF=0.333333;AN=6;AO=17;CIGAR=1X;DP=32;DPB=32;DPRA=1.78571;EPP=39.9253;EPPR=35.5824;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=689;QR=580;RO=15;RPL=17;RPP=39.9253;RPPR=35.5824;RPR=0;RUN=1;SAF=17;SAP=39.9253;SAR=0;SRF=15;SRP=35.5824;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:15:2,13:2:81:13:527:-43.2613,0,-3.17028 0/0:7:7,0:7:279:0:0:0,-2.10721,-25.4802 0/1:10:6,4:6:220:4:162:-11.9567,0,-17.1369 dDocent_Contig_9176 157 . A T 291.731 . 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AB=0;ABP=0;AC=4;AF=1;AN=4;AO=3;CIGAR=1X1M10X;DP=3;DPB=3;DPRA=0;EPP=9.52472;EPPR=0;GTI=0;LEN=1;MEANALT=1;MQM=58.3333;MQMR=0;NS=2;NUMALT=1;ODDS=0;PAIRED=0.666667;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=106;QR=0;RO=0;RPL=0;RPP=9.52472;RPPR=0;RPR=3;RUN=1;SAF=3;SAP=9.52472;SAR=0;SRF=0;SRP=0;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL .:.:.:.:.:.:.:. 1|1:2:0,2:0:0:2:69:-6.55254,-0.60206,0 1|1:1:0,1:0:0:1:37:-3.69317,-0.30103,0 dDocent_Contig_9178 11 . A T 216.392 . AB=0.149533;ABP=117.165;AC=3;AF=0.5;AN=6;AO=16;CIGAR=1X;DP=107;DPB=107;DPRA=0;EPP=37.7539;EPPR=200.614;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=0.989011;PAO=0;PQA=0;PQR=0;PRO=0;QA=647;QR=3650;RO=91;RPL=0;RPP=37.7539;RPPR=200.614;RPR=16;RUN=1;SAF=16;SAP=37.7539;SAR=0;SRF=91;SRP=200.614;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:62:53,9:53:2128:9:364:-14.4605,0,-173.029 0/1:12:9,3:9:365:3:123:-7.85243,0,-29.6021 0/1:33:29,4:29:1157:4:160:-4.84893,0,-94.4735 dDocent_Contig_9179 66 . T C 1900.92 . AB=0.72619;ABP=40.3389;AC=3;AF=0.5;AN=6;AO=61;CIGAR=1X;DP=84;DPB=84;DPRA=0;EPP=135.47;EPPR=52.9542;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=0;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=2444;QR=926;RO=23;RPL=61;RPP=135.47;RPPR=52.9542;RPR=0;RUN=1;SAF=61;SAP=135.47;SAR=0;SRF=23;SRP=52.9542;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:39:13,26:13:523:26:1042:-82.3315,0,-35.675 0/1:11:4,7:4:160:7:281:-22.3497,0,-11.4721 0/1:34:6,28:6:243:28:1121:-90.934,0,-12.0132 dDocent_Contig_9180 121 . T A 52.9722 . 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A G 66.8998 . AB=0.210526;ABP=16.8392;AC=1;AF=0.166667;AN=6;AO=4;CIGAR=1X;DP=67;DPB=67;DPRA=0.791667;EPP=11.6962;EPPR=139.813;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=0.75;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=154;QR=2347;RO=63;RPL=0;RPP=11.6962;RPPR=139.813;RPR=4;RUN=1;SAF=4;SAP=11.6962;SAR=0;SRF=63;SRP=139.813;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:27:27,0:27:1012:0:0:0,-8.12781,-91.3882 0/1:19:15,4:15:544:4:154:-8.51389,0,-43.5671 0/0:21:21,0:21:791:0:0:0,-6.32163,-71.5122 dDocent_Contig_9184 152 . T C 200.15 . AB=0.347826;ABP=7.63648;AC=1;AF=0.166667;AN=6;AO=8;CIGAR=1X;DP=41;DPB=41;DPRA=2.55556;EPP=20.3821;EPPR=74.6689;GTI=0;LEN=1;MEANALT=1;MQM=56;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=316;QR=1326;RO=33;RPL=0;RPP=20.3821;RPPR=74.6689;RPR=8;RUN=1;SAF=0;SAP=20.3821;SAR=8;SRF=0;SRP=74.6689;SRR=33;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:14:14,0:14:558:0:0:0,-4.21442,-50.5629 0/0:4:4,0:4:161:0:0:0,-1.20412,-14.8749 0/1:23:15,8:15:607:8:316:-21.8389,0,-48.0428 dDocent_Contig_9185 89 . A G 42.6676 . AB=0.190476;ABP=20.4855;AC=2;AF=0.333333;AN=6;AO=5;CIGAR=1X;DP=44;DPB=44;DPRA=0;EPP=13.8677;EPPR=87.6977;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=179;QR=1376;RO=39;RPL=5;RPP=13.8677;RPPR=87.6977;RPR=0;RUN=1;SAF=5;SAP=13.8677;SAR=0;SRF=39;SRP=87.6977;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:23:22,1:22:778:1:36:0,-3.32541,-66.7447 0/1:13:10,3:10:354:3:107:-6.06878,0,-28.2867 0/1:8:7,1:7:244:1:36:-1.19004,0,-19.8918 dDocent_Contig_9186 108 . T A 986.557 . AB=0.603175;ABP=8.83536;AC=3;AF=0.5;AN=6;AO=38;CIGAR=1X;DP=63;DPB=63;DPRA=0;EPP=85.5263;EPPR=57.2971;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=1357;QR=855;RO=25;RPL=0;RPP=85.5263;RPPR=57.2971;RPR=38;RUN=1;SAF=0;SAP=85.5263;SAR=38;SRF=0;SRP=57.2971;SRR=25;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:26:9,17:9:314:17:606:-47.0451,0,-20.7706 0/1:4:2,2:2:72:2:71:-5.53794,0,-5.6326 0/1:33:14,19:14:469:19:680:-51.5955,0,-32.593 dDocent_Contig_9187 151 . T A 40.357 . AB=0.230769;ABP=11.1951;AC=2;AF=0.333333;AN=6;AO=3;CIGAR=1X;DP=15;DPB=15;DPRA=3.25;EPP=9.52472;EPPR=29.068;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=0.666667;PAIREDR=0.833333;PAO=0;PQA=0;PQR=0;PRO=0;QA=118;QR=487;RO=12;RPL=3;RPP=9.52472;RPPR=29.068;RPR=0;RUN=1;SAF=0;SAP=9.52472;SAR=3;SRF=0;SRP=29.068;SRR=12;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:7:5,2:5:203:2:77:-5.20099,0,-16.5458 0/1:6:5,1:5:204:1:41:-2.28839,0,-16.9379 0/0:2:2,0:2:80:0:0:0,-0.60206,-7.59179 dDocent_Contig_9188 110 . T C 41.3647 . AB=0.230769;ABP=11.1951;AC=1;AF=0.166667;AN=6;AO=3;CIGAR=1X;DP=27;DPB=27;DPRA=1.85714;EPP=9.52472;EPPR=55.1256;GTI=0;LEN=1;MEANALT=1;MQM=44;MQMR=55.75;NS=3;NUMALT=1;ODDS=0;PAIRED=0;PAIREDR=0.916667;PAO=0;PQA=0;PQR=0;PRO=0;QA=104;QR=848;RO=24;RPL=0;RPP=9.52472;RPPR=55.1256;RPR=3;RUN=1;SAF=0;SAP=9.52472;SAR=3;SRF=0;SRP=55.1256;SRR=24;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:13:10,3:10:357:3:104:-5.65856,0,-28.5589 0/0:1:1,0:1:36:0:0:0,-0.30103,-3.59827 0/0:13:13,0:13:455:0:0:0,-3.91339,-37.2855 dDocent_Contig_9189 56 . A T 97.0046 . AB=0.444444;ABP=3.25157;AC=1;AF=0.166667;AN=6;AO=4;CIGAR=1X;DP=29;DPB=29;DPRA=0.9;EPP=11.6962;EPPR=57.2971;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=154;QR=1002;RO=25;RPL=4;RPP=11.6962;RPPR=57.2971;RPR=0;RUN=1;SAF=4;SAP=11.6962;SAR=0;SRF=25;SRP=57.2971;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:17:17,0:17:675:0:0:0,-5.11751,-61.0746 0/0:3:3,0:3:123:0:0:0,-0.90309,-11.4648 0/1:9:5,4:5:204:4:154:-11.5242,0,-16.0348 dDocent_Contig_9190 42 . T A 231.242 . AB=0.170455;ABP=86.0198;AC=3;AF=0.5;AN=6;AO=15;CIGAR=1X;DP=88;DPB=88;DPRA=0;EPP=35.5824;EPPR=161.528;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=600;QR=2869;RO=73;RPL=0;RPP=35.5824;RPPR=161.528;RPR=15;RUN=1;SAF=15;SAP=35.5824;SAR=0;SRF=73;SRP=161.528;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:41:36,5:36:1427:5:205:-6.49278,0,-116.339 0/1:34:26,8:26:1004:8:317:-18.6598,0,-80.4117 0/1:13:11,2:11:438:2:78:-3.48991,0,-35.8608 dDocent_Contig_9192 180 . T A 248.459 . AB=0.226415;ABP=37.4671;AC=2;AF=0.5;AN=4;AO=12;CIGAR=1X;DP=53;DPB=53;DPRA=0;EPP=29.068;EPPR=92.0407;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=2;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=486;QR=1612;RO=41;RPL=12;RPP=29.068;RPPR=92.0407;RPR=0;RUN=1;SAF=0;SAP=29.068;SAR=12;SRF=0;SRP=92.0407;SRR=41;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:43:34,9:34:1334:9:363:-20.0904,0,-107.376 ./.:.:.:.:.:.:.:. 0/1:10:7,3:7:278:3:123:-8.45449,0,-22.3781 dDocent_Contig_9193 22 . C A 493.417 . AB=0.351852;ABP=13.3047;AC=2;AF=0.333333;AN=6;AO=19;CIGAR=1X;DP=62;DPB=62;DPRA=3.375;EPP=44.2683;EPPR=94.2121;GTI=0;LEN=1;MEANALT=1.5;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=761;QR=1652;RO=42;RPL=0;RPP=44.2683;RPPR=94.2121;RPR=19;RUN=1;SAF=19;SAP=44.2683;SAR=0;SRF=42;SRP=94.2121;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:38:26,11:26:1037:11:446:-28.9667,0,-82.0923 0/0:8:8,0:8:316:0:0:0,-2.40824,-28.8027 0/1:16:8,8:8:299:8:315:-23.8978,0,-22.4373 dDocent_Contig_9194 58 . G T 115.198 . AB=0.666667;ABP=4.45795;AC=1;AF=0.166667;AN=6;AO=4;CIGAR=1X;DP=62;DPB=62;DPRA=0.214286;EPP=11.6962;EPPR=128.956;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=164;QR=2305;RO=58;RPL=4;RPP=11.6962;RPPR=128.956;RPR=0;RUN=1;SAF=4;SAP=11.6962;SAR=0;SRF=58;SRP=128.956;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:22:22,0:22:871:0:0:0,-6.62266,-78.7001 0/1:6:2,4:2:81:4:164:-13.3437,0,-5.87955 0/0:34:34,0:34:1353:0:0:0,-10.235,-122.036 dDocent_Contig_9195 149 . G T 35.4774 . AB=0.222222;ABP=9.04217;AC=1;AF=0.166667;AN=6;AO=2;CIGAR=1X;DP=23;DPB=23;DPRA=1.28571;EPP=7.35324;EPPR=48.6112;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=82;QR=841;RO=21;RPL=0;RPP=7.35324;RPPR=48.6112;RPR=2;RUN=1;SAF=0;SAP=7.35324;SAR=2;SRF=0;SRP=48.6112;SRR=21;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:9:7,2:7:280:2:82:-5.07041,0,-22.8607 0/0:10:10,0:10:401:0:0:0,-3.0103,-36.4494 0/0:4:4,0:4:160:0:0:0,-1.20412,-14.7834 dDocent_Contig_9197 60 . A C 1206.76 . AB=0.511905;ABP=3.1137;AC=2;AF=0.5;AN=4;AO=43;CIGAR=1X;DP=84;DPB=84;DPRA=0;EPP=96.3836;EPPR=92.0407;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=2;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=1656;QR=1594;RO=41;RPL=43;RPP=96.3836;RPPR=92.0407;RPR=0;RUN=1;SAF=43;SAP=96.3836;SAR=0;SRF=41;SRP=92.0407;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:59:34,25:34:1327:25:993:-71.9063,0,-101.931 ./.:.:.:.:.:.:.:. 0/1:25:7,18:7:267:18:663:-52.469,0,-16.8671 dDocent_Contig_9199 8 . A G 290.736 . AB=0.241935;ABP=38.8746;AC=2;AF=0.333333;AN=6;AO=16;CIGAR=1X;DP=93;DPB=93;DPRA=0;EPP=37.7539;EPPR=170.214;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=0.9375;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=601;QR=2941;RO=77;RPL=0;RPP=37.7539;RPPR=170.214;RPR=16;RUN=1;SAF=16;SAP=37.7539;SAR=0;SRF=77;SRP=170.214;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:52:39,13:39:1473:13:496:-29.3323,0,-117.192 0/1:10:8,2:8:307:2:66:-3.25623,0,-24.9813 0/0:31:30,1:30:1161:1:39:0,-5.43537,-100.892 dDocent_Contig_9200 20 . G A 65.9486 . AB=0.147059;ABP=39.7976;AC=1;AF=0.166667;AN=6;AO=8;CIGAR=1X;DP=85;DPB=85;DPRA=42;EPP=20.3821;EPPR=170.214;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=0.779221;PAO=0;PQA=0;PQR=0;PRO=0;QA=325;QR=3070;RO=77;RPL=0;RPP=20.3821;RPPR=170.214;RPR=8;RUN=1;SAF=8;SAP=20.3821;SAR=0;SRF=77;SRP=170.214;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:50:47,3:47:1860:3:122:0,-3.67901,-156.235 0/0:1:1,0:1:40:0:0:0,-0.30103,-3.99568 0/1:34:29,5:29:1170:5:203:-8.41804,0,-95.3383 dDocent_Contig_9201 15 . C T 59.1852 . AB=0.166667;ABP=26.1727;AC=1;AF=0.166667;AN=6;AO=5;CIGAR=1X;DP=48;DPB=48;DPRA=7.5;EPP=13.8677;EPPR=62.7775;GTI=0;LEN=1;MEANALT=1.5;MQM=60;MQMR=59.0476;NS=3;NUMALT=1;ODDS=0;PAIRED=0;PAIREDR=0.428571;PAO=0;PQA=0;PQR=0;PRO=0;QA=203;QR=1650;RO=42;RPL=0;RPP=13.8677;RPPR=94.2121;RPR=5;RUN=1;SAF=5;SAP=13.8677;SAR=0;SRF=38;SRP=62.7775;SRR=4;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:21:19,1:19:738:1:41:0,-2.33054,-62.6576 0/0:3:3,0:3:120:0:0:0,-0.90309,-11.1879 0/1:24:20,4:20:792:4:162:-7.74224,0,-63.6672 dDocent_Contig_9203 14 . A C 185.03 . AB=0.296296;ABP=12.7417;AC=2;AF=0.333333;AN=6;AO=10;CIGAR=1X;DP=50;DPB=50;DPRA=0;EPP=24.725;EPPR=89.8692;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=398;QR=1623;RO=40;RPL=0;RPP=24.725;RPPR=89.8692;RPR=10;RUN=1;SAF=10;SAP=24.725;SAR=0;SRF=40;SRP=89.8692;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:23:21,2:21:854:2:72:0,-0.0884475,-70.3347 0/1:5:1,4:1:41:4:162:-13.4618,0,-2.58942 0/1:22:18,4:18:728:4:164:-8.52724,0,-59.2227 dDocent_Contig_9204 20 . T C 91.9688 . AB=0.181818;ABP=32.0291;AC=2;AF=0.333333;AN=6;AO=6;CIGAR=1X;DP=38;DPB=38;DPRA=3.3;EPP=16.0391;EPPR=72.4974;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=243;QR=1275;RO=32;RPL=0;RPP=16.0391;RPPR=72.4974;RPR=6;RUN=1;SAF=6;SAP=16.0391;SAR=0;SRF=32;SRP=72.4974;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:21:17,4:17:669:4:162:-8.64512,0,-54.2092 0/0:5:5,0:5:204:0:0:0,-1.50515,-18.744 0/1:12:10,2:10:402:2:81:-4.07337,0,-32.9266 dDocent_Contig_9205 65 . A G 908.395 . AB=0.472222;ABP=3.49285;AC=3;AF=0.5;AN=6;AO=34;CIGAR=1X;DP=72;DPB=72;DPRA=0;EPP=76.8404;EPPR=85.5263;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=1300;QR=1472;RO=38;RPL=34;RPP=76.8404;RPPR=85.5263;RPR=0;RUN=1;SAF=34;SAP=76.8404;SAR=0;SRF=38;SRP=85.5263;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:34:17,17:17:679:17:640:-47.6812,0,-51.2051 0/1:14:6,8:6:235:8:325:-25.4052,0,-17.3052 0/1:24:15,9:15:558:9:335:-23.276,0,-43.3317 dDocent_Contig_9206 98 . N A 66.4848 . AB=0;ABP=0;AC=2;AF=1;AN=2;AO=2;CIGAR=1X;DP=2;DPB=2;DPRA=0;EPP=7.35324;EPPR=0;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=0;NS=1;NUMALT=1;ODDS=5.99146;PAIRED=1;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=70;QR=0;RO=0;RPL=2;RPP=7.35324;RPPR=0;RPR=0;RUN=1;SAF=2;SAP=7.35324;SAR=0;SRF=0;SRP=0;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 1/1:2:0,2:0:0:2:70:-6.6474,-0.60206,0 ./.:.:.:.:.:.:.:. ./.:.:.:.:.:.:.:. dDocent_Contig_9207 192 . G T 59.3463 . AB=0.133333;ABP=73.0765;AC=3;AF=0.5;AN=6;AO=8;CIGAR=1X;DP=60;DPB=60;DPRA=0;EPP=20.3821;EPPR=115.927;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=309;QR=2011;RO=52;RPL=8;RPP=20.3821;RPPR=115.927;RPR=0;RUN=1;SAF=0;SAP=20.3821;SAR=8;SRF=0;SRP=115.927;SRR=52;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:32:29,3:29:1121:3:119:-1.46243,0,-91.5447 0/1:7:5,2:5:197:2:76:-5.1076,0,-15.999 0/1:21:18,3:18:693:3:114:-4.30908,0,-56.3763 dDocent_Contig_9208 44 . G T 407.807 . AB=0.205607;ABP=83.5577;AC=3;AF=0.5;AN=6;AO=22;CIGAR=1X;DP=107;DPB=107;DPRA=0;EPP=50.7827;EPPR=187.585;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=0.954545;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=853;QR=3338;RO=85;RPL=0;RPP=50.7827;RPPR=187.585;RPR=22;RUN=1;SAF=22;SAP=50.7827;SAR=0;SRF=85;SRP=187.585;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:62:50,12:50:1961:12:480:-24.8862,0,-158.017 0/1:9:8,1:8:314:1:41:-1.3853,0,-25.9093 0/1:36:27,9:27:1063:9:332:-19.3835,0,-85.1207 dDocent_Contig_9210 95 . T A 165.816 . AB=0.238095;ABP=28.0339;AC=1;AF=0.166667;AN=6;AO=10;CIGAR=1X;DP=73;DPB=73;DPRA=2.70968;EPP=24.725;EPPR=139.813;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=338;QR=2170;RO=63;RPL=10;RPP=24.725;RPPR=139.813;RPR=0;RUN=1;SAF=10;SAP=24.725;SAR=0;SRF=63;SRP=139.813;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:42:32,10:32:1103:10:338:-18.1044,0,-86.9354 0/0:7:7,0:7:246:0:0:0,-2.10721,-22.4823 0/0:24:24,0:24:821:0:0:0,-7.22472,-74.2044 dDocent_Contig_9211 28 . A G 1162.97 . AB=0.5;ABP=3.0103;AC=3;AF=0.5;AN=6;AO=40;CIGAR=1X;DP=80;DPB=80;DPRA=0;EPP=89.8692;EPPR=87.6977;GTI=0;LEN=1;MEANALT=1.33333;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=1610;QR=1548;RO=39;RPL=0;RPP=89.8692;RPPR=87.6977;RPR=40;RUN=1;SAF=40;SAP=89.8692;SAR=0;SRF=39;SRP=87.6977;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:50:25,24:25:1003:24:970:-72.439,0,-75.4065 0/1:24:9,15:9:349:15:599:-47.0233,0,-24.5417 0/1:6:5,1:5:196:1:41:-2.28839,0,-16.2083 dDocent_Contig_9213 13 . G T 46.6505 . AB=0.166667;ABP=26.1727;AC=2;AF=0.333333;AN=6;AO=5;CIGAR=1X;DP=53;DPB=53;DPRA=0;EPP=13.8677;EPPR=107.241;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=203;QR=1928;RO=48;RPL=0;RPP=13.8677;RPPR=107.241;RPR=5;RUN=1;SAF=5;SAP=13.8677;SAR=0;SRF=48;SRP=107.241;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:29:28,1:28:1136:1:41:0,-4.6353,-98.4246 0/1:5:4,1:4:157:1:40:-2.49053,0,-13.002 0/1:19:16,3:16:635:3:122:-5.65292,0,-51.7611 dDocent_Contig_9214 7 . T A 134.179 . AB=0.625;ABP=4.09604;AC=1;AF=0.166667;AN=6;AO=5;CIGAR=1X;DP=159;DPB=159;DPRA=0.10596;EPP=13.8677;EPPR=333.074;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=59.9934;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=192;QR=5780;RO=152;RPL=0;RPP=13.8677;RPPR=333.074;RPR=5;RUN=1;SAF=5;SAP=13.8677;SAR=0;SRF=152;SRP=333.074;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:122:120,0:120:4583:0:0:0,-36.1236,-412.331 0/1:8:3,5:3:106:5:192:-15.2418,0,-7.47902 0/0:29:29,0:29:1091:0:0:0,-8.72987,-98.4943 dDocent_Contig_9215 15 . T C 44.3183 . AB=0.166667;ABP=20.3821;AC=1;AF=0.166667;AN=6;AO=3;CIGAR=1X;DP=28;DPB=28;DPRA=3.6;EPP=9.52472;EPPR=57.2971;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=0.92;PAO=0;PQA=0;PQR=0;PRO=0;QA=122;QR=1015;RO=25;RPL=0;RPP=9.52472;RPPR=57.2971;RPR=3;RUN=1;SAF=3;SAP=9.52472;SAR=0;SRF=25;SRP=57.2971;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:18:15,3:15:607:3:122:-5.95395,0,-49.5492 0/0:1:1,0:1:41:0:0:0,-0.30103,-4.09457 0/0:9:9,0:9:367:0:0:0,-2.70927,-33.3953 dDocent_Contig_9216 86 . A C 37.58 . AB=0.214286;ABP=12.937;AC=1;AF=0.166667;AN=6;AO=4;CIGAR=1X;DP=54;DPB=54;DPRA=6.25;EPP=11.6962;EPPR=111.584;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=58.92;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=0.98;PAO=0;PQA=0;PQR=0;PRO=0;QA=140;QR=1702;RO=50;RPL=4;RPP=11.6962;RPPR=111.584;RPR=0;RUN=1;SAF=4;SAP=11.6962;SAR=0;SRF=50;SRP=111.584;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:36:35,1:35:1202:1:35:0,-7.33845,-102.369 0/1:14:11,3:11:364:3:105:-5.58174,0,-28.8655 0/0:4:4,0:4:136:0:0:0,-1.20412,-12.5759 dDocent_Contig_9217 23 . A T 115.833 . AB=0.0974212;ABP=494.304;AC=2;AF=0.333333;AN=6;AO=43;CIGAR=1X;DP=470;DPB=470;DPRA=0;EPP=96.3836;EPPR=930.229;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=0.790698;PAIREDR=0.997658;PAO=0;PQA=0;PQR=0;PRO=0;QA=1692;QR=16894;RO=427;RPL=0;RPP=96.3836;RPPR=930.229;RPR=43;RUN=1;SAF=43;SAP=96.3836;SAR=0;SRF=427;SRP=930.229;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:319:289,30:289:11419:30:1172:-9.72056,0,-930.919 0/1:30:26,4:26:1014:4:156:-5.38554,0,-82.5255 0/0:121:112,9:112:4461:9:364:0,-3.30025,-368.311 dDocent_Contig_9218 20 . C T 530.257 . AB=0.244898;ABP=58.405;AC=3;AF=0.5;AN=6;AO=24;CIGAR=1X;DP=98;DPB=98;DPRA=0;EPP=55.1256;EPPR=163.699;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=966;QR=2989;RO=74;RPL=0;RPP=55.1256;RPPR=163.699;RPR=24;RUN=1;SAF=24;SAP=55.1256;SAR=0;SRF=74;SRP=163.699;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:38:34,4:34:1371:4:164:-3.71076,0,-112.206 0/1:22:15,7:15:603:7:282:-19.1288,0,-47.9862 0/1:38:25,13:25:1015:13:520:-35.7062,0,-80.2036 dDocent_Contig_9219 172 . T C 6248.33 . AB=0;ABP=0;AC=6;AF=1;AN=6;AO=914;CIGAR=1X;DP=957;DPB=957;DPRA=0;EPP=1987.74;EPPR=83.3548;GTI=0;LEN=1;MEANALT=2;MQM=9.39168;MQMR=47.5946;NS=3;NUMALT=1;ODDS=0;PAIRED=0.344639;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=36141;QR=1478;RO=37;RPL=914;RPP=1987.74;RPPR=83.3548;RPR=0;RUN=1;SAF=0;SAP=1987.74;SAR=914;SRF=0;SRP=83.3548;SRR=37;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 1/1:491:19,467:19:750:467:18537:-327.086,-84.1305,0 1/1:211:12,198:12:486:198:7769:-105.625,-24.3269,0 1/1:255:6,249:6:242:249:9835:-191.521,-56.8566,0 dDocent_Contig_9220 17 . G A 99.5799 . AB=0.166667;ABP=55.1256;AC=0;AF=0;AN=6;AO=9;CIGAR=2X1M1X2M1X;DP=124;DPB=124;DPRA=0;EPP=22.5536;EPPR=202.786;GTI=0;LEN=1;MEANALT=3;MQM=10;MQMR=44.1522;NS=3;NUMALT=2;ODDS=6.93889e-18;PAIRED=0;PAIREDR=0.391304;PAO=0;PQA=0;PQR=0;PRO=0;QA=355;QR=3513;RO=92;RPL=0;RPP=22.5536;RPPR=202.786;RPR=9;RUN=1;SAF=9;SAP=22.5536;SAR=0;SRF=92;SRP=202.786;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|0:54:36,8,9:36:1357:8,9:320,355:-6.15932,0,-93.7141,-11.7015,-90.7806,-104.995 0|0:10:8,2,0:8:311:2,0:78,0:-1.70678,0,-23.1812,-4.11502,-23.7833,-27.6279 0|0:60:48,11,0:48:1845:11,0:435,0:-7.25346,0,-131.575,-21.7029,-134.886,-156.661 dDocent_Contig_9221 40 . C T 62.6159 . AB=0.272727;ABP=7.94546;AC=1;AF=0.166667;AN=6;AO=3;CIGAR=1X;DP=17;DPB=17;DPRA=3.66667;EPP=9.52472;EPPR=33.4109;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=0;PAIREDR=0.857143;PAO=0;PQA=0;PQR=0;PRO=0;QA=119;QR=569;RO=14;RPL=0;RPP=9.52472;RPPR=33.4109;RPR=3;RUN=1;SAF=3;SAP=9.52472;SAR=0;SRF=14;SRP=33.4109;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:11:8,3:8:324:3:119:-7.78368,0,-26.2181 0/0:1:1,0:1:41:0:0:0,-0.30103,-4.09457 0/0:5:5,0:5:204:0:0:0,-1.50515,-18.744 dDocent_Contig_9222 14 . C T 1256.86 . AB=0.15;ABP=88.132;AC=0;AF=0;AN=6;AO=12;CIGAR=3M1X1M;DP=133;DPB=102.4;DPRA=0;EPP=29.068;EPPR=152.842;GTI=0;LEN=1;MEANALT=3;MQM=60;MQMR=40.7681;NS=3;NUMALT=2;ODDS=0;PAIRED=1;PAIREDR=0.492754;PAO=0;PQA=0;PQR=0;PRO=0;QA=442;QR=2708;RO=69;RPL=0;RPP=29.068;RPPR=152.842;RPR=12;RUN=1;SAF=12;SAP=29.068;SAR=0;SRF=69;SRP=152.842;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|0:80:36,31,12:36:1402:31,12:1122,442:-80.7663,0,-69.2957,-55.4734,-42.4779,-130.5 0|0:15:9,6,0:9:361:6,0:222,0:-15.8226,0,-28.3303,-18.5319,-30.1364,-48.2862 0|0:38:24,14,0:24:945:14,0:508,0:-34.6198,0,-56.3709,-41.8445,-60.5853,-102.086 dDocent_Contig_9223 7 . T C 2565.37 . 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T A 53.1606 . AB=0.148148;ABP=32.0437;AC=1;AF=0.166667;AN=6;AO=4;CIGAR=1X;DP=71;DPB=71;DPRA=1.22727;EPP=11.6962;EPPR=148.499;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=162;QR=2683;RO=67;RPL=0;RPP=11.6962;RPPR=148.499;RPR=4;RUN=1;SAF=4;SAP=11.6962;SAR=0;SRF=67;SRP=148.499;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:27:23,4:23:920:4:162:-6.83894,0,-74.9725 0/0:15:15,0:15:608:0:0:0,-4.51545,-55.0581 0/0:29:29,0:29:1155:0:0:0,-8.72987,-104.226 dDocent_Contig_9229 18 . C A 38.4862 . AB=0.285714;ABP=5.80219;AC=1;AF=0.166667;AN=6;AO=2;CIGAR=1X;DP=36;DPB=36;DPRA=0.482759;EPP=7.35324;EPPR=76.8404;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=82;QR=1371;RO=34;RPL=0;RPP=7.35324;RPPR=76.8404;RPR=2;RUN=1;SAF=2;SAP=7.35324;SAR=0;SRF=34;SRP=76.8404;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:18:18,0:18:733:0:0:0,-5.41854,-66.2926 0/0:11:11,0:11:435:0:0:0,-3.31133,-39.5023 0/1:7:5,2:5:203:2:82:-5.67247,0,-16.5458 dDocent_Contig_9231 71 . T A 101.23 . AB=0.25;ABP=20.3821;AC=3;AF=0.5;AN=6;AO=8;CIGAR=1X;DP=32;DPB=32;DPRA=0;EPP=20.3821;EPPR=55.1256;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=3.46945e-18;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=269;QR=800;RO=24;RPL=8;RPP=20.3821;RPPR=55.1256;RPR=0;RUN=1;SAF=8;SAP=20.3821;SAR=0;SRF=24;SRP=55.1256;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:16:12,4:12:405:4:131:-7.29781,0,-31.9586 0/1:3:1,2:1:35:2:68:-5.55479,0,-2.59554 0/1:13:11,2:11:360:2:70:-2.73401,0,-28.8034 dDocent_Contig_9232 139 . A G 165.896 . AB=0.266667;ABP=17.1973;AC=1;AF=0.166667;AN=6;AO=8;CIGAR=1X;DP=45;DPB=45;DPRA=4;EPP=20.3821;EPPR=83.3548;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=301;QR=1346;RO=37;RPL=0;RPP=20.3821;RPPR=83.3548;RPR=8;RUN=1;SAF=0;SAP=20.3821;SAR=8;SRF=0;SRP=83.3548;SRR=37;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:13:13,0:13:490:0:0:0,-3.91339,-44.4426 0/0:2:2,0:2:78:0:0:0,-0.60206,-7.40347 0/1:30:22,8:22:778:8:301:-18.4132,0,-61.294 dDocent_Contig_9233 34 . T A 73.7557 . AB=0.16129;ABP=33.9012;AC=2;AF=0.333333;AN=6;AO=5;CIGAR=1M1I2M1X;DP=72;DPB=72.75;DPRA=0.378049;EPP=13.8677;EPPR=141.985;GTI=0;LEN=1;MEANALT=2;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=199;QR=2546;RO=64;RPL=0;RPP=13.8677;RPPR=141.985;RPR=5;RUN=1;SAF=5;SAP=13.8677;SAR=0;SRF=64;SRP=141.985;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|0:41:40,0:40:1602:0:0:0,-12.0412,-144.018 0|1:6:3,3:3:118:3:118:-9.19602,0,-9.19602 0|1:25:21,2:21:826:2:81:-0.379938,0,-67.3689 dDocent_Contig_9235 19 . T A 3510.35 . AB=0.756579;ABP=89.9263;AC=3;AF=0.5;AN=6;AO=115;CIGAR=1X;DP=152;DPB=152;DPRA=0;EPP=252.73;EPPR=81.1833;GTI=0;LEN=1;MEANALT=1.33333;MQM=56.2609;MQMR=60;NS=3;NUMALT=1;ODDS=6.93889e-18;PAIRED=0.965217;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=4625;QR=1450;RO=36;RPL=0;RPP=252.73;RPPR=81.1833;RPR=115;RUN=1;SAF=115;SAP=252.73;SAR=0;SRF=36;SRP=81.1833;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:82:10,72:10:406:72:2903:-233.474,0,-12.2156 0/1:21:5,16:5:200:16:646:-52.0832,0,-12.0577 0/1:49:21,27:21:844:27:1076:-71.0011,0,-61.4101 dDocent_Contig_9237 137 . T A 80.7106 . AB=0.333333;ABP=5.9056;AC=1;AF=0.25;AN=4;AO=4;CIGAR=1X1M1X;DP=19;DPB=19;DPRA=1.71429;EPP=11.6962;EPPR=33.4109;GTI=0;LEN=1;MEANALT=1;MQM=40;MQMR=60;NS=2;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=154;QR=513;RO=14;RPL=0;RPP=11.6962;RPPR=33.4109;RPR=4;RUN=1;SAF=0;SAP=11.6962;SAR=4;SRF=0;SRP=33.4109;SRR=14;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|1:12:8,4:8:291:4:154:-9.77,0,-22.9273 .:.:.:.:.:.:.:. 0|0:7:6,0:6:222:0:0:0,-1.80618,-20.1478 dDocent_Contig_9238 110 . G A 92.0366 . AB=0.230769;ABP=19.3799;AC=4;AF=0.666667;AN=6;AO=7;CIGAR=1X;DP=27;DPB=27;DPRA=0;EPP=18.2106;EPPR=46.4397;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=214;QR=667;RO=20;RPL=0;RPP=18.2106;RPPR=46.4397;RPR=7;RUN=1;SAF=0;SAP=18.2106;SAR=7;SRF=0;SRP=46.4397;SRR=20;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:14:10,4:10:321:4:123:-7.15925,0,-24.9856 0/1:12:10,2:10:346:2:56:-1.70629,0,-27.8622 1/1:1:0,1:0:0:1:35:-3.49863,-0.30103,0 dDocent_Contig_9239 16 . G A 322.675 . AB=0.419355;ABP=4.76149;AC=3;AF=0.5;AN=6;AO=13;CIGAR=1X;DP=31;DPB=31;DPRA=0;EPP=31.2394;EPPR=42.0968;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=511;QR=728;RO=18;RPL=0;RPP=31.2394;RPPR=42.0968;RPR=13;RUN=1;SAF=13;SAP=31.2394;SAR=0;SRF=18;SRP=42.0968;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:7:3,4:3:123:4:150:-11.7576,0,-9.35758 0/1:14:8,6:8:325:6:239:-17.6706,0,-25.4052 0/1:10:7,3:7:280:3:122:-8.36219,0,-22.5589 dDocent_Contig_9240 79 . G T 447.379 . AB=0.145161;ABP=70.8163;AC=1;AF=0.166667;AN=6;AO=9;CIGAR=11M1X2M;DP=70;DPB=76.8571;DPRA=0;EPP=22.5536;EPPR=70.3259;GTI=0;LEN=1;MEANALT=4;MQM=60;MQMR=60;NS=3;NUMALT=3;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=307;QR=1143;RO=31;RPL=9;RPP=22.5536;RPPR=70.3259;RPR=0;RUN=1;SAF=9;SAP=22.5536;SAR=0;SRF=31;SRP=70.3259;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|0:39:22,5,9,2:22:809:5,9,2:189,318,74:-19.2583,-10.3836,-75.0265,0,-50.6421,-63.4261,-19.8262,-70.4773,-60.0814,-85.3689 0|0:8:3,0,5,0:3:116:0,5,0:0,173,0:-13.5004,-14.4035,-23.947,0,-9.91461,-8.40946,-14.4035,-23.947,-9.91461,-23.947 0|1:23:6,2,7,7:6:218:2,7,7:75,226,233:-17.4349,-13.0925,-30.303,-1.02911,-12.6922,-16.7316,-0.389439,-12.0545,0,-16.0946 dDocent_Contig_9241 28 . A T 195.874 . AB=0.777778;ABP=9.04217;AC=1;AF=0.166667;AN=6;AO=7;CIGAR=1X;DP=39;DPB=39;DPRA=0.6;EPP=18.2106;EPPR=72.4974;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=8.67362e-19;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=264;QR=1266;RO=32;RPL=0;RPP=18.2106;RPPR=72.4974;RPR=7;RUN=1;SAF=7;SAP=18.2106;SAR=0;SRF=32;SRP=72.4974;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:25:25,0:25:989:0:0:0,-7.52575,-89.3119 0/0:5:5,0:5:198:0:0:0,-1.50515,-18.197 0/1:9:2,7:2:79:7:264:-21.411,0,-4.78797 dDocent_Contig_9242 9 . A G 4176.08 . AB=0.21608;ABP=142.345;AC=4;AF=0.666667;AN=6;AO=43;CIGAR=1X2M2X;DP=199;DPB=199.6;DPRA=0;EPP=96.3836;EPPR=74.6689;GTI=0;LEN=1;MEANALT=4;MQM=60;MQMR=60;NS=3;NUMALT=2;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=1663;QR=1297;RO=33;RPL=0;RPP=96.3836;RPPR=74.6689;RPR=43;RUN=1;SAF=43;SAP=96.3836;SAR=0;SRF=33;SRP=74.6689;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 1|1:121:11,70,33:11:431:70,33:2683,1280:-286.639,-69.7466,-84.1229,-184.783,0,-210.294 0|1:13:4,7,2:4:158:7,2:271,79:-21.0512,0,-10.8945,-15.7526,-6.50079,-28.1552 0|1:65:18,38,8:18:708:38,8:1471,304:-115.442,0,-46.8295,-95.9304,-33.3385,-151.766 dDocent_Contig_9244 24 . G C 57.2957 . AB=0.112903;ABP=83.705;AC=1;AF=0.166667;AN=6;AO=7;CIGAR=1X;DP=86;DPB=86;DPRA=5.16667;EPP=18.2106;EPPR=172.385;GTI=0;LEN=1;MEANALT=2;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=285;QR=3070;RO=78;RPL=0;RPP=18.2106;RPPR=172.385;RPR=7;RUN=1;SAF=7;SAP=18.2106;SAR=0;SRF=78;SRP=172.385;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:62:54,7:54:2139:7:285:-7.25227,0,-173.922 0/0:3:3,0:3:119:0:0:0,-0.90309,-11.0945 0/0:21:21,0:21:812:0:0:0,-6.32163,-73.3825 dDocent_Contig_9246 16 . C T 115.983 . AB=0.230769;ABP=19.3799;AC=2;AF=0.333333;AN=6;AO=8;CIGAR=1X2M;DP=70;DPB=70;DPRA=0;EPP=20.3821;EPPR=133.299;GTI=0;LEN=1;MEANALT=1.33333;MQM=60;MQMR=60;NS=3;NUMALT=2;ODDS=3.46945e-18;PAIRED=0.875;PAIREDR=0.983333;PAO=0;PQA=0;PQR=0;PRO=0;QA=326;QR=2420;RO=60;RPL=0;RPP=20.3821;RPPR=133.299;RPR=8;RUN=1;SAF=8;SAP=20.3821;SAR=0;SRF=60;SRP=133.299;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|0:44:42,0,2:42:1690:0,2:0,82:0,-12.6433,-151.916,-5.46564,-145.147,-144.545 0|1:3:2,0,1:2:81:0,1:0,40:-3.09259,-3.69465,-10.3771,0,-7.08367,-6.78264 0|1:23:16,2,5:16:649:2,5:81,204:-12.017,-10.1552,-63.0734,0,-46.8435,-52.0175 dDocent_Contig_9248 123 . T A 119.638 . AB=0.263158;ABP=12.2676;AC=3;AF=0.5;AN=6;AO=6;CIGAR=1X;DP=29;DPB=29;DPRA=1.11111;EPP=16.0391;EPPR=52.9542;GTI=0;LEN=1;MEANALT=1;MQM=40;MQMR=59.913;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=214;QR=811;RO=23;RPL=0;RPP=16.0391;RPPR=52.9542;RPR=6;RUN=1;SAF=0;SAP=16.0391;SAR=6;SRF=0;SRP=52.9542;SRR=23;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:19:14,5:14:497:5:178:-10.0315,0,-39.3448 1/1:1:0,1:0:0:1:36:-3.45449,-0.30103,0 0/0:9:9,0:9:314:0:0:0,-2.70927,-28.597 dDocent_Contig_9249 107 . N C 97.0363 . AB=0;ABP=0;AC=2;AF=1;AN=2;AO=3;CIGAR=1X;DP=3;DPB=3;DPRA=0;EPP=9.52472;EPPR=0;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=0;NS=1;NUMALT=1;ODDS=6.68461;PAIRED=1;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=104;QR=0;RO=0;RPL=0;RPP=9.52472;RPPR=0;RPR=3;RUN=1;SAF=0;SAP=9.52472;SAR=3;SRF=0;SRP=0;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 1/1:3:0,3:0:0:3:104:-9.70309,-0.90309,0 ./.:.:.:.:.:.:.:. ./.:.:.:.:.:.:.:. dDocent_Contig_9250 43 . G A 1548.48 . AB=0.55102;ABP=5.22609;AC=2;AF=0.5;AN=4;AO=54;CIGAR=1X;DP=98;DPB=98;DPRA=0;EPP=120.27;EPPR=98.5551;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=2;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=2083;QR=1772;RO=44;RPL=0;RPP=120.27;RPPR=98.5551;RPR=54;RUN=1;SAF=54;SAP=120.27;SAR=0;SRF=44;SRP=98.5551;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:71:28,43:28:1127:43:1664:-128.618,0,-80.3378 ./.:.:.:.:.:.:.:. 0/1:27:16,11:16:645:11:419:-29.9286,0,-50.2551 dDocent_Contig_9252 19 . T C 45.3676 . AB=0;ABP=0;AC=0;AF=0;AN=6;AO=3;CIGAR=1M2D2M1X4M1I3M1X1M4X;DP=25;DPB=24.3684;DPRA=3.66667;EPP=9.52472;EPPR=39.9253;GTI=0;LEN=1;MEANALT=2;MQM=10;MQMR=60;NS=3;NUMALT=2;ODDS=0;PAIRED=0;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=30;QR=647;RO=17;RPL=0;RPP=9.52472;RPPR=39.9253;RPR=3;RUN=1;SAF=3;SAP=9.52472;SAR=0;SRF=17;SRP=39.9253;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|0:11:7,3,0:7:264:3,0:30,0:0,-1.28618,-22.0231,-2.10721,-22.9262,-23.8876 0|0:11:7,0,3:7:272:0,3:0,106:-6.36021,-8.46742,-30.8519,0,-22.4258,-21.5227 0|0:3:3,0,0:3:111:0,0:0,0:0,-0.90309,-10.3532,-0.90309,-10.3532,-10.3532 dDocent_Contig_9256 17 . T A 70.3045 . AB=0.2;ABP=18.6449;AC=1;AF=0.166667;AN=6;AO=5;CIGAR=1X;DP=45;DPB=45;DPRA=4;EPP=13.8677;EPPR=89.8692;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=202;QR=1599;RO=40;RPL=0;RPP=13.8677;RPPR=89.8692;RPR=5;RUN=1;SAF=5;SAP=13.8677;SAR=0;SRF=40;SRP=89.8692;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:20:19,1:19:767:1:41:0,-1.92603,-65.2561 0/1:20:16,4:16:627:4:161:-8.8543,0,-50.7424 0/0:5:5,0:5:205:0:0:0,-1.50515,-18.835 dDocent_Contig_9257 64 . T C 330.351 . AB=0.5;ABP=3.0103;AC=3;AF=0.5;AN=6;AO=13;CIGAR=1X;DP=30;DPB=30;DPRA=2;EPP=31.2394;EPPR=39.9253;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=450;QR=555;RO=17;RPL=13;RPP=31.2394;RPPR=39.9253;RPR=0;RUN=1;SAF=13;SAP=31.2394;SAR=0;SRF=17;SRP=39.9253;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:22:11,11:11:364:11:380:-27.9102,0,-26.457 1/1:2:0,2:0:0:2:70:-6.6474,-0.60206,0 0/0:6:6,0:6:191:0:0:0,-1.80618,-17.503 dDocent_Contig_9259 45 . G A 305.437 . AB=0.428571;ABP=4.25114;AC=2;AF=0.333333;AN=6;AO=12;CIGAR=1X;DP=31;DPB=31;DPRA=4.66667;EPP=29.068;EPPR=44.2683;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=464;QR=773;RO=19;RPL=0;RPP=29.068;RPPR=44.2683;RPR=12;RUN=1;SAF=12;SAP=29.068;SAR=0;SRF=19;SRP=44.2683;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:14:10,4:10:405:4:161:-10.6605,0,-32.596 0/0:3:3,0:3:122:0:0:0,-0.90309,-11.3725 0/1:14:6,8:6:246:8:303:-23.406,0,-18.3057 dDocent_Contig_9260 5 . T C 62.8944 . AB=0;ABP=0;AC=2;AF=1;AN=2;AO=2;CIGAR=1X13I3M1X;DP=2;DPB=7.2;DPRA=0;EPP=7.35324;EPPR=0;GTI=0;LEN=1;MEANALT=1;MQM=45.5;MQMR=0;NS=1;NUMALT=1;ODDS=5.99146;PAIRED=0.5;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=74;QR=0;RO=0;RPL=0;RPP=7.35324;RPPR=0;RPR=2;RUN=1;SAF=2;SAP=7.35324;SAR=0;SRF=0;SRP=0;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL .:.:.:.:.:.:.:. 1|1:2:0,2:0:0:2:74:-6.28836,-0.60206,0 .:.:.:.:.:.:.:. dDocent_Contig_9262 114 . T C 660.792 . AB=0.491803;ABP=3.0459;AC=3;AF=0.5;AN=6;AO=30;CIGAR=1X;DP=61;DPB=61;DPRA=0;EPP=68.1545;EPPR=70.3259;GTI=0;LEN=1;MEANALT=1;MQM=40;MQMR=46.3871;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=1010;QR=1000;RO=31;RPL=0;RPP=68.1545;RPPR=70.3259;RPR=30;RUN=1;SAF=0;SAP=68.1545;SAR=30;SRF=0;SRP=70.3259;SRR=31;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:36:12,24:12:392:24:808:-60.0542,0,-24.5537 0/1:7:6,1:6:158:1:35:-1.27349,0,-12.2841 0/1:18:13,5:13:450:5:167:-9.52151,0,-35.1185 dDocent_Contig_9263 158 . C T 324.399 . AB=0.22449;ABP=35.3165;AC=3;AF=0.5;AN=6;AO=11;CIGAR=4M2X;DP=49;DPB=49;DPRA=0;EPP=3.20771;EPPR=70.3259;GTI=0;LEN=1;MEANALT=1.66667;MQM=60;MQMR=60;NS=3;NUMALT=3;ODDS=0;PAIRED=0;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=444;QR=1200;RO=31;RPL=6;RPP=3.20771;RPPR=70.3259;RPR=5;RUN=1;SAF=11;SAP=26.8965;SAR=0;SRF=0;SRP=70.3259;SRR=31;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|1:24:20,0,0,4:20:779:0,0,4:0,0,164:-7.92518,-13.9458,-77.9516,-13.9458,-77.9516,-77.9516,0,-64.4119,-64.4119,-63.2078 0|1:9:4,0,0,5:4:157:0,0,5:0,0,199:-15.5797,-16.7838,-29.6939,-16.7838,-29.6939,-29.6939,0,-13.3047,-13.3047,-11.7995 0|1:16:7,5,2,2:7:264:5,2,2:201,79,81:-14.4579,0,-20.1125,-10.0662,-15.1149,-31.0835,-9.88484,-14.9341,-25.0039,-30.9035 dDocent_Contig_9265 21 . G A 886.082 . AB=0.320755;ABP=17.8009;AC=4;AF=0.666667;AN=6;AO=30;CIGAR=1X;DP=66;DPB=66;DPRA=0;EPP=68.1545;EPPR=81.1833;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=1189;QR=1421;RO=36;RPL=0;RPP=68.1545;RPPR=81.1833;RPR=30;RUN=1;SAF=30;SAP=68.1545;SAR=0;SRF=36;SRP=81.1833;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:44:29,15:29:1138:15:581:-39.3777,0,-89.4475 1/1:13:0,13:0:0:13:527:-47.7768,-3.91339,0 0/1:9:7,2:7:283:2:81:-4.97646,0,-23.1337 dDocent_Contig_9266 67 . C A 445.246 . AB=0.296875;ABP=25.9465;AC=3;AF=0.5;AN=6;AO=19;CIGAR=1X;DP=64;DPB=64;DPRA=0;EPP=44.2683;EPPR=100.727;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=0;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=752;QR=1804;RO=45;RPL=19;RPP=44.2683;RPPR=100.727;RPR=0;RUN=1;SAF=19;SAP=44.2683;SAR=0;SRF=45;SRP=100.727;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:46:32,14:32:1276:14:572:-37.9742,0,-101.257 0/1:5:4,1:4:162:1:29:-1.39451,0,-13.4618 0/1:13:9,4:9:366:4:151:-10.0388,0,-29.3912 dDocent_Contig_9269 63 . C T 114.971 . AB=0.189189;ABP=34.0565;AC=2;AF=0.333333;AN=6;AO=7;CIGAR=1X;DP=75;DPB=75;DPRA=0.486842;EPP=18.2106;EPPR=150.67;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=268;QR=2617;RO=68;RPL=7;RPP=18.2106;RPPR=150.67;RPR=0;RUN=1;SAF=7;SAP=18.2106;SAR=0;SRF=68;SRP=150.67;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:38:38,0:38:1483:0:0:0,-11.4391,-133.736 0/1:15:10,5:10:383:5:194:-13.3174,0,-30.3104 0/1:22:20,2:20:751:2:74:-0.403216,0,-61.2934 dDocent_Contig_9270 25 . G T 101.684 . AB=0.1875;ABP=16.582;AC=4;AF=0.666667;AN=6;AO=5;CIGAR=1X;DP=18;DPB=18;DPRA=0;EPP=13.8677;EPPR=31.2394;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=192;QR=526;RO=13;RPL=0;RPP=13.8677;RPPR=31.2394;RPR=5;RUN=1;SAF=5;SAP=13.8677;SAR=0;SRF=13;SRP=31.2394;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 1/1:2:0,2:0:0:2:70:-6.64712,-0.60206,0 0/1:6:5,1:5:202:1:40:-2.1895,0,-16.7559 0/1:10:8,2:8:324:2:82:-4.76938,0,-26.5185 dDocent_Contig_9272 68 . A C 178.281 . AB=0.25;ABP=20.3821;AC=1;AF=0.166667;AN=6;AO=8;CIGAR=1X;DP=43;DPB=43;DPRA=5.81818;EPP=20.3821;EPPR=79.0118;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=51.7714;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=0.828571;PAO=0;PQA=0;PQR=0;PRO=0;QA=318;QR=1355;RO=35;RPL=8;RPP=20.3821;RPPR=79.0118;RPR=0;RUN=1;SAF=8;SAP=20.3821;SAR=0;SRF=35;SRP=79.0118;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:32:24,8:24:928:8:318:-19.3502,0,-72.9077 0/0:1:1,0:1:41:0:0:0,-0.30103,-4.09457 0/0:10:10,0:10:386:0:0:0,-3.0103,-23.9935 dDocent_Contig_9273 7 . T A 55.8296 . AB=0.210526;ABP=16.8392;AC=1;AF=0.166667;AN=6;AO=4;CIGAR=1X;DP=115;DPB=115;DPRA=0.395833;EPP=11.6962;EPPR=244.044;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=142;QR=4234;RO=111;RPL=0;RPP=11.6962;RPPR=244.044;RPR=4;RUN=1;SAF=4;SAP=11.6962;SAR=0;SRF=111;SRP=244.044;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:40:40,0:40:1534:0:0:0,-12.0412,-138.331 0/1:19:15,4:15:559:4:142:-7.40687,0,-44.9281 0/0:56:56,0:56:2141:0:0:0,-16.8577,-192.92 dDocent_Contig_9275 18 . C A 198.49 . AB=0.125;ABP=22.5536;AC=1;AF=0.166667;AN=6;AO=2;CIGAR=7M1X1M;DP=68;DPB=66.7778;DPRA=2.28571;EPP=7.35324;EPPR=122.441;GTI=0;LEN=1;MEANALT=2;MQM=60;MQMR=60;NS=3;NUMALT=2;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=82;QR=2171;RO=55;RPL=0;RPP=7.35324;RPPR=122.441;RPR=2;RUN=1;SAF=2;SAP=7.35324;SAR=0;SRF=55;SRP=122.441;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|0:45:35,10,0:35:1400:10,0:374,0:-20.4529,0,-112.713,-30.9889,-115.723,-146.333 0|0:7:7,0,0:7:271:0,0:0,0:0,-2.10721,-24.755,-2.10721,-24.755,-24.755 0|1:16:13,1,2:13:500:1,2:34,82:-2.90115,-4.07974,-44.801,0,-38.3305,-40.4833 dDocent_Contig_9276 11 . C A 682.363 . AB=0.384615;ABP=10.5269;AC=2;AF=0.333333;AN=6;AO=25;CIGAR=1X;DP=67;DPB=67;DPRA=16.25;EPP=57.2971;EPPR=94.2121;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=1007;QR=1678;RO=42;RPL=0;RPP=57.2971;RPPR=94.2121;RPR=25;RUN=1;SAF=25;SAP=57.2971;SAR=0;SRF=42;SRP=94.2121;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:46:25,21:25:1002:21:847:-62.6949,0,-76.6305 0/0:2:2,0:2:78:0:0:0,-0.60206,-7.4033 0/1:19:15,4:15:598:4:160:-9.06386,0,-48.4401 dDocent_Contig_9277 43 . T C 250.743 . AB=0.5;ABP=3.0103;AC=3;AF=0.5;AN=6;AO=8;CIGAR=1X;DP=25;DPB=25;DPRA=0.636364;EPP=20.3821;EPPR=39.9253;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=8.67362e-19;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=327;QR=687;RO=17;RPL=0;RPP=20.3821;RPPR=39.9253;RPR=8;RUN=1;SAF=8;SAP=20.3821;SAR=0;SRF=17;SRP=39.9253;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:11:11,0:11:445:0:0:0,-3.31133,-40.4057 1/1:2:0,2:0:0:2:82:-7.77968,-0.60206,0 0/1:12:6,6:6:242:6:245:-18.8171,0,-18.5446 dDocent_Contig_9278 178 . A G 799.854 . AB=0.305556;ABP=38.4777;AC=3;AF=0.5;AN=6;AO=33;CIGAR=1X;DP=108;DPB=108;DPRA=0;EPP=74.6689;EPPR=165.871;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=1299;QR=2948;RO=75;RPL=33;RPP=74.6689;RPPR=165.871;RPR=0;RUN=1;SAF=0;SAP=74.6689;SAR=33;SRF=0;SRP=165.871;SRR=75;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:68:44,24:44:1748:24:944:-64.7873,0,-137.07 0/1:10:4,6:4:155:6:232:-18.2368,0,-11.3132 0/1:30:27,3:27:1045:3:123:-2.43389,0,-85.3013 dDocent_Contig_9279 7 . T C 4533.91 . AB=0.506173;ABP=3.11753;AC=3;AF=0.5;AN=6;AO=164;CIGAR=1X5M;DP=324;DPB=329.5;DPRA=0;EPP=359.132;EPPR=200.614;GTI=0;LEN=1;MEANALT=7;MQM=50.689;MQMR=57.6154;NS=3;NUMALT=4;ODDS=0;PAIRED=0.268293;PAIREDR=0.714286;PAO=0;PQA=0;PQR=0;PRO=0;QA=6067;QR=3495;RO=91;RPL=0;RPP=359.132;RPPR=200.614;RPR=164;RUN=1;SAF=164;SAP=359.132;SAR=0;SRF=91;SRP=200.614;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|1:165:45,3,14,9,84:45:1732:3,14,9,84:113,440,273,3070:-231.488,-235.775,-376.671,-213.448,-345.986,-351.031,-224.268,-356.807,-334.478,-363.357,0,-132.568,-110.247,-121.064,-116.541 0|1:44:15,3,5,0,21:15:570:3,5,0,21:115,193,0,801:-60.0214,-55.0976,-99.936,-48.6846,-84.9871,-92.9213,-64.5368,-100.839,-94.4264,-110.278,0,-36.2956,-29.8821,-45.7351,-39.4135 0|1:115:31,4,10,4,59:31:1193:4,10,4,59:157,364,137,2196:-167.404,-163.822,-259.687,-148.895,-233.049,-242.952,-166.159,-250.313,-235.385,-262.023,0,-84.1615,-69.2376,-86.5004,-79.3151 dDocent_Contig_9280 23 . A G 145.439 . AB=0.75;ABP=7.35324;AC=1;AF=0.166667;AN=6;AO=6;CIGAR=1X;DP=48;DPB=48;DPRA=0.4;EPP=16.0391;EPPR=94.2121;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=205;QR=1629;RO=42;RPL=0;RPP=16.0391;RPPR=94.2121;RPR=6;RUN=1;SAF=6;SAP=16.0391;SAR=0;SRF=42;SRP=94.2121;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:27:27,0:27:1044:0:0:0,-8.12781,-94.2606 0/1:8:2,6:2:78:6:205:-16.3677,0,-4.99523 0/0:13:13,0:13:507:0:0:0,-3.91339,-45.9771 dDocent_Contig_9282 13 . A G 139.295 . AB=0.25;ABP=18.2106;AC=2;AF=0.333333;AN=6;AO=7;CIGAR=1X;DP=30;DPB=30;DPRA=7;EPP=18.2106;EPPR=52.9542;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=279;QR=907;RO=23;RPL=0;RPP=18.2106;RPPR=52.9542;RPR=7;RUN=1;SAF=7;SAP=18.2106;SAR=0;SRF=23;SRP=52.9542;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:17:12,5:12:481:5:199:-13.1708,0,-38.5239 0/0:2:2,0:2:79:0:0:0,-0.60206,-7.49724 0/1:11:9,2:9:347:2:80:-4.28046,0,-28.2744 dDocent_Contig_9283 67 . G A 115.801 . AB=0.157895;ABP=60.9543;AC=2;AF=0.333333;AN=6;AO=9;CIGAR=1X;DP=58;DPB=58;DPRA=28.5;EPP=22.5536;EPPR=109.412;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=338;QR=1838;RO=49;RPL=9;RPP=22.5536;RPPR=109.412;RPR=0;RUN=1;SAF=9;SAP=22.5536;SAR=0;SRF=49;SRP=109.412;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:45:41,4:41:1548:4:153:-0.595021,0,-126.037 0/0:1:1,0:1:37:0:0:0,-0.30103,-3.69783 0/1:12:7,5:7:253:5:185:-13.3977,0,-19.5071 dDocent_Contig_9284 94 . T A 81.4345 . AB=0.4;ABP=3.87889;AC=1;AF=0.25;AN=4;AO=4;CIGAR=1X;DP=16;DPB=16;DPRA=1.66667;EPP=11.6962;EPPR=29.068;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=2;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=139;QR=417;RO=12;RPL=4;RPP=11.6962;RPPR=29.068;RPR=0;RUN=1;SAF=4;SAP=11.6962;SAR=0;SRF=12;SRP=29.068;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:10:6,4:6:208:4:139:-9.84239,0,-16.0493 ./.:.:.:.:.:.:.:. 0/0:6:6,0:6:209:0:0:0,-1.80618,-19.1511 dDocent_Contig_9285 9 . A C 5534.58 . AB=0.53527;ABP=5.61426;AC=4;AF=0.666667;AN=6;AO=211;CIGAR=1X;DP=323;DPB=323;DPRA=0;EPP=461.191;EPPR=246.215;GTI=0;LEN=1;MEANALT=1;MQM=45.8009;MQMR=59.9464;NS=3;NUMALT=1;ODDS=0;PAIRED=0.706161;PAIREDR=0.973214;PAO=0;PQA=0;PQR=0;PRO=0;QA=8103;QR=4279;RO=112;RPL=0;RPP=461.191;RPPR=246.215;RPR=211;RUN=1;SAF=211;SAP=461.191;SAR=0;SRF=112;SRP=246.215;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:138:64,74:64:2456:74:2836:-181.702,0,-179.7 1/1:82:0,82:0:0:82:3158:-242.588,-24.6845,0 0/1:103:48,55:48:1823:55:2109:-132.691,0,-133.318 dDocent_Contig_9286 15 . G A 67.4712 . AB=0.333333;ABP=5.18177;AC=1;AF=0.166667;AN=6;AO=4;CIGAR=1X;DP=32;DPB=32;DPRA=2.7;EPP=11.6962;EPPR=63.8115;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=161;QR=1119;RO=28;RPL=0;RPP=11.6962;RPPR=63.8115;RPR=4;RUN=1;SAF=4;SAP=11.6962;SAR=0;SRF=28;SRP=63.8115;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:18:17,1:17:674:1:40:0,-1.42286,-56.9884 0/0:5:5,0:5:200:0:0:0,-1.50515,-18.3795 0/1:9:6,3:6:245:3:121:-8.57093,0,-19.7202 dDocent_Contig_9287 110 . T G 242.763 . AB=0.285714;ABP=22.5536;AC=3;AF=0.5;AN=6;AO=14;CIGAR=1X;DP=49;DPB=49;DPRA=0;EPP=33.4109;EPPR=79.0118;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=483;QR=1252;RO=35;RPL=0;RPP=33.4109;RPPR=79.0118;RPR=14;RUN=1;SAF=0;SAP=33.4109;SAR=14;SRF=0;SRP=79.0118;SRR=35;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:21:18,3:18:646:3:104:-3.38146,0,-52.1498 0/1:14:12,2:12:428:2:70:-2.43298,0,-34.6447 0/1:14:5,9:5:178:9:309:-23.9291,0,-12.1543 dDocent_Contig_9288 107 . N A 65.5375 . AB=0;ABP=0;AC=2;AF=1;AN=2;AO=2;CIGAR=1X;DP=2;DPB=2;DPRA=0;EPP=7.35324;EPPR=0;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=0;NS=1;NUMALT=1;ODDS=5.99146;PAIRED=1;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=69;QR=0;RO=0;RPL=0;RPP=7.35324;RPPR=0;RPR=2;RUN=1;SAF=0;SAP=7.35324;SAR=2;SRF=0;SRP=0;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 1/1:2:0,2:0:0:2:69:-6.55266,-0.60206,0 ./.:.:.:.:.:.:.:. ./.:.:.:.:.:.:.:. dDocent_Contig_9291 14 . T C 1969.72 . AB=0.410256;ABP=13.9233;AC=3;AF=0.5;AN=6;AO=64;CIGAR=1X6M;DP=156;DPB=156;DPRA=0;EPP=141.985;EPPR=102.898;GTI=0;LEN=1;MEANALT=4.33333;MQM=60;MQMR=60;NS=3;NUMALT=4;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=2585;QR=1837;RO=46;RPL=0;RPP=141.985;RPPR=102.898;RPR=64;RUN=1;SAF=64;SAP=141.985;SAR=0;SRF=46;SRP=102.898;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|1:84:22,10,9,0,42:22:875:10,9,0,42:382,360,0,1695:-133.109,-108.396,-177.426,-110.077,-150.781,-179.409,-139.732,-180.436,-182.118,-211.773,0,-40.7097,-42.3889,-72.0456,-59.4024 0|1:24:6,4,7,1,6:6:244:4,7,1,6:158,274,41,235:-20.7201,-9.52386,-28.4503,0,-7.12997,-18.0235,-19.1412,-26.2697,-16.746,-38.9704,-3.20494,-10.3346,-0.812451,-19.9508,-21.5294 0|1:48:18,0,9,3,16:18:718:0,9,3,16:0,359,119,655:-48.6434,-54.062,-113.19,-24.4982,-83.6246,-80.9153,-44.2668,-103.394,-73.829,-102.491,0,-59.1301,-29.5639,-49.3343,-54.3136 dDocent_Contig_9292 44 . C T 333.714 . AB=0.318182;ABP=15.6443;AC=3;AF=0.5;AN=6;AO=14;CIGAR=1X;DP=44;DPB=44;DPRA=0;EPP=33.4109;EPPR=68.1545;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=3.46945e-18;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=565;QR=1214;RO=30;RPL=0;RPP=33.4109;RPPR=68.1545;RPR=14;RUN=1;SAF=14;SAP=33.4109;SAR=0;SRF=30;SRP=68.1545;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:21:17,4:17:690:4:162:-8.64533,0,-56.1071 0/1:7:6,1:6:243:1:41:-1.98736,0,-20.1408 0/1:16:7,9:7:281:9:362:-28.1271,0,-20.8451 dDocent_Contig_9294 145 . A G 70.5662 . AB=0.333333;ABP=5.18177;AC=1;AF=0.25;AN=4;AO=3;CIGAR=1X;DP=14;DPB=14;DPRA=1.8;EPP=9.52472;EPPR=26.8965;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=2;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=123;QR=433;RO=11;RPL=0;RPP=9.52472;RPPR=26.8965;RPR=3;RUN=1;SAF=0;SAP=9.52472;SAR=3;SRF=0;SRP=26.8965;SRR=11;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:9:6,3:6:229:3:123:-8.75552,0,-18.2639 ./.:.:.:.:.:.:.:. 0/0:5:5,0:5:204:0:0:0,-1.50515,-18.744 dDocent_Contig_9295 97 . T C 70.2696 . AB=0;ABP=0;AC=2;AF=1;AN=2;AO=2;CIGAR=3X1I4X5I4X;DP=2;DPB=3.09091;DPRA=0;EPP=7.35324;EPPR=0;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=0;NS=1;NUMALT=1;ODDS=5.99146;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=74;QR=0;RO=0;RPL=0;RPP=7.35324;RPPR=0;RPR=2;RUN=1;SAF=2;SAP=7.35324;SAR=0;SRF=0;SRP=0;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 1|1:2:0,2:0:0:2:74:-7.02588,-0.60206,0 .:.:.:.:.:.:.:. .:.:.:.:.:.:.:. dDocent_Contig_9296 61 . G T 271.93 . AB=0.179775;ABP=82.2812;AC=2;AF=0.333333;AN=6;AO=16;CIGAR=1X;DP=97;DPB=97;DPRA=5.5625;EPP=37.7539;EPPR=178.9;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=6.93889e-18;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=631;QR=3180;RO=81;RPL=16;RPP=37.7539;RPPR=178.9;RPR=0;RUN=1;SAF=16;SAP=37.7539;SAR=0;SRF=81;SRP=178.9;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:73:62,11:62:2452:11:444:-18.341,0,-198.853 0/0:8:8,0:8:321:0:0:0,-2.40824,-29.2579 0/1:16:11,5:11:407:5:187:-12.3749,0,-32.1567 dDocent_Contig_9298 22 . G A 46.1966 . AB=0.138889;ABP=43.7857;AC=1;AF=0.166667;AN=6;AO=7;CIGAR=1X;DP=92;DPB=92;DPRA=1.08621;EPP=18.2106;EPPR=187.585;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=3.46945e-18;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=268;QR=3358;RO=85;RPL=0;RPP=18.2106;RPPR=187.585;RPR=7;RUN=1;SAF=7;SAP=18.2106;SAR=0;SRF=85;SRP=187.585;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:29:29,0:29:1156:0:0:0,-8.72987,-104.321 0/1:36:31,5:31:1227:5:188:-6.44314,0,-99.8649 0/0:27:25,2:25:975:2:80:0,-0.536235,-80.4439 dDocent_Contig_9300 113 . C T 355.171 . AB=0.441176;ABP=4.03217;AC=3;AF=0.5;AN=6;AO=15;CIGAR=1X;DP=34;DPB=34;DPRA=0;EPP=35.5824;EPPR=44.2683;GTI=0;LEN=1;MEANALT=1;MQM=53.9333;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=0;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=553;QR=632;RO=19;RPL=0;RPP=35.5824;RPPR=44.2683;RPR=15;RUN=1;SAF=15;SAP=35.5824;SAR=0;SRF=0;SRP=44.2683;SRR=19;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:8:7,1:7:234:1:37:-0.594507,0,-18.9793 0/1:8:3,5:3:103:5:183:-14.4106,0,-7.20173 0/1:18:9,9:9:295:9:333:-24.6238,0,-21.4515 dDocent_Contig_9301 122 . C T 107.824 . AB=0.454545;ABP=3.20771;AC=1;AF=0.25;AN=4;AO=5;CIGAR=1X;DP=40;DPB=40;DPRA=0.37931;EPP=13.8677;EPPR=79.0118;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=2;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=175;QR=1235;RO=35;RPL=0;RPP=13.8677;RPPR=79.0118;RPR=5;RUN=1;SAF=0;SAP=13.8677;SAR=5;SRF=0;SRP=79.0118;SRR=35;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:29:29,0:29:1020:0:0:0,-8.72987,-92.1114 ./.:.:.:.:.:.:.:. 0/1:11:6,5:6:215:5:175:-12.7824,0,-16.3878 dDocent_Contig_9302 10 . G A 464.339 . AB=0.30303;ABP=25.2514;AC=2;AF=0.333333;AN=6;AO=20;CIGAR=1X;DP=73;DPB=73;DPRA=4.71429;EPP=46.4397;EPPR=118.098;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=768;QR=2093;RO=53;RPL=0;RPP=46.4397;RPPR=118.098;RPR=20;RUN=1;SAF=20;SAP=46.4397;SAR=0;SRF=53;SRP=118.098;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:31:19,12:19:756:12:455:-31.9583,0,-59.0269 0/0:7:7,0:7:281:0:0:0,-2.10721,-25.6617 0/1:35:27,8:27:1056:8:313:-17.9985,0,-84.7935 dDocent_Contig_9303 23 . C A 70.4083 . AB=0.12963;ABP=67.3502;AC=2;AF=0.333333;AN=6;AO=7;CIGAR=1X;DP=61;DPB=61;DPRA=3.85714;EPP=18.2106;EPPR=120.27;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=279;QR=2164;RO=54;RPL=0;RPP=18.2106;RPPR=120.27;RPR=7;RUN=1;SAF=7;SAP=18.2106;SAR=0;SRF=54;SRP=120.27;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:44:38,6:38:1520:6:238:-8.54647,0,-123.792 0/0:7:7,0:7:280:0:0:0,-2.10721,-25.5711 0/1:10:9,1:9:364:1:41:-1.08427,0,-30.1142 dDocent_Contig_9304 19 . A G 945.546 . AB=0.551724;ABP=4.35811;AC=3;AF=0.5;AN=6;AO=32;CIGAR=1X;DP=58;DPB=58;DPRA=0;EPP=72.4974;EPPR=59.4686;GTI=0;LEN=1;MEANALT=1;MQM=59.9688;MQMR=60;NS=3;NUMALT=1;ODDS=3.46945e-18;PAIRED=0.625;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=1294;QR=1024;RO=26;RPL=0;RPP=72.4974;RPPR=59.4686;RPR=32;RUN=1;SAF=32;SAP=72.4974;SAR=0;SRF=26;SRP=59.4686;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:37:12,25:12:466:25:1008:-79.8759,0,-31.146 0/1:7:3,4:3:121:4:163:-12.9512,0,-9.17299 0/1:14:11,3:11:437:3:123:-7.25037,0,-35.4679 dDocent_Contig_9305 19 . T C 1079.41 . AB=0.654545;ABP=14.4204;AC=3;AF=0.5;AN=6;AO=36;CIGAR=1X;DP=55;DPB=55;DPRA=0;EPP=81.1833;EPPR=44.2683;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=1433;QR=768;RO=19;RPL=0;RPP=81.1833;RPPR=44.2683;RPR=36;RUN=1;SAF=36;SAP=81.1833;SAR=0;SRF=19;SRP=44.2683;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:35:11,24:11:447:24:961:-76.2556,0,-30.0495 0/1:2:1,1:1:41:1:39:-3.2945,0,-3.49251 0/1:18:7,11:7:280:11:433:-33.9023,0,-20.1514 dDocent_Contig_9306 71 . A T 99.5683 . AB=0.170213;ABP=47.41;AC=1;AF=0.166667;AN=6;AO=8;CIGAR=1X;DP=53;DPB=53;DPRA=15.6667;EPP=20.3821;EPPR=100.727;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=281;QR=1581;RO=45;RPL=8;RPP=20.3821;RPPR=100.727;RPR=0;RUN=1;SAF=8;SAP=20.3821;SAR=0;SRF=45;SRP=100.727;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:47:39,8:39:1364:8:281:-11.4789,0,-108.899 0/0:1:1,0:1:37:0:0:0,-0.30103,-3.69783 0/0:5:5,0:5:180:0:0:0,-1.50515,-16.5521 dDocent_Contig_9307 22 . C T 175.968 . AB=0.164384;ABP=74.4309;AC=3;AF=0.5;AN=6;AO=12;CIGAR=1X;DP=73;DPB=73;DPRA=0;EPP=29.068;EPPR=135.47;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=488;QR=2419;RO=61;RPL=0;RPP=29.068;RPPR=135.47;RPR=12;RUN=1;SAF=12;SAP=29.068;SAR=0;SRF=61;SRP=135.47;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:44:39,5:39:1556:5:202:-5.31617,0,-127.028 0/1:3:2,1:2:80:1:41:-3.19148,0,-6.68848 0/1:26:20,6:20:783:6:245:-14.6027,0,-62.9527 dDocent_Contig_9308 13 . T C 4304.13 . AB=0.810811;ABP=158.241;AC=4;AF=0.666667;AN=6;AO=157;CIGAR=1X3M1X;DP=193;DPB=193;DPRA=0;EPP=343.931;EPPR=63.8115;GTI=0;LEN=1;MEANALT=2;MQM=43.2357;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=6197;QR=1084;RO=28;RPL=0;RPP=343.931;RPPR=63.8115;RPR=157;RUN=1;SAF=157;SAP=343.931;SAR=0;SRF=28;SRP=63.8115;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|1:95:18,74:18:699:74:2915:-201.182,0,-35.195 1|1:8:0,7:0:0:7:271:-15.4205,-2.10721,0 0|1:90:10,76:10:385:76:3011:-217.333,0,-8.76119 dDocent_Contig_9309 113 . A C 541.66 . AB=0.111111;ABP=50.3001;AC=3;AF=0.5;AN=6;AO=4;CIGAR=2X1M;DP=68;DPB=68;DPRA=0;EPP=11.6962;EPPR=46.4397;GTI=0;LEN=1;MEANALT=5;MQM=7.5;MQMR=60;NS=3;NUMALT=4;ODDS=0;PAIRED=0;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=30;QR=676;RO=20;RPL=0;RPP=11.6962;RPPR=46.4397;RPR=4;RUN=1;SAF=4;SAP=11.6962;SAR=0;SRF=0;SRP=46.4397;SRR=20;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|1:36:13,1,16,4,1:13:439:1,16,4,1:39,471,30,39:-29.4685,-32.5183,-67.8403,0,-34.8502,-30.8945,-32.8606,-67.6111,-35.2071,-67.2697,-31.1905,-65.952,-33.5214,-66.2852,-66.515 0|1:10:2,2,6,0,0:2:70:2,6,0,0:77,151,0,0:-9.6356,-8.52479,-13.6502,0,-4.17962,-3.99928,-10.2377,-14.2523,-5.80546,-15.9633,-10.2377,-14.2523,-5.80546,-15.9633,-15.9633 0|1:22:5,4,10,0,2:5:167:4,10,0,2:141,308,0,28:-20.5833,-18.6655,-31.0065,0,-10.1978,-10.5944,-22.0885,-32.2106,-13.6047,-35.6352,-20.7109,-30.8386,-12.2339,-34.2567,-33.6547 dDocent_Contig_9312 14 . C T 629.717 . AB=0.207547;ABP=42.3836;AC=2;AF=0.333333;AN=6;AO=11;CIGAR=2X;DP=53;DPB=53;DPRA=0;EPP=26.8965;EPPR=57.2971;GTI=0;LEN=1;MEANALT=1.66667;MQM=60;MQMR=60;NS=3;NUMALT=2;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=438;QR=978;RO=25;RPL=0;RPP=26.8965;RPPR=57.2971;RPR=11;RUN=1;SAF=11;SAP=26.8965;SAR=0;SRF=25;SRP=57.2971;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|0:31:16,3,12:16:631:3,12:117,472:-34.0101,-29.2102,-80.2227,0,-42.3023,-48.3063 1|0:8:1,2,5:1:41:2,5:78,170:-16.4507,-10.3258,-13.1195,-3.0077,0,-4.89324 0|1:14:8,6,0:8:306:6,0:243,0:-18.0335,0,-23.6814,-20.4418,-25.4876,-45.5345 dDocent_Contig_9313 98 . N C 372.46 . AB=0;ABP=0;AC=6;AF=1;AN=6;AO=15;CIGAR=1X;DP=15;DPB=15;DPRA=0;EPP=35.5824;EPPR=0;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=0;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=400;QR=0;RO=0;RPL=15;RPP=35.5824;RPPR=0;RPR=0;RUN=1;SAF=15;SAP=35.5824;SAR=0;SRF=0;SRP=0;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 1/1:8:0,8:0:0:8:260:-23.7193,-2.40824,0 1/1:5:0,5:0:0:5:83:-7.63517,-1.50515,0 1/1:2:0,2:0:0:2:57:-5.41407,-0.60206,0 dDocent_Contig_9314 17 . A G 47.0826 . AB=0.0962963;ABP=194.116;AC=2;AF=0.333333;AN=6;AO=13;CIGAR=1X;DP=158;DPB=158;DPRA=2.93478;EPP=31.2394;EPPR=317.874;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=6.93889e-18;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=518;QR=5593;RO=145;RPL=0;RPP=31.2394;RPPR=317.874;RPR=13;RUN=1;SAF=13;SAP=31.2394;SAR=0;SRF=145;SRP=317.874;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:84:77,7:77:2963:7:279:-0.194421,0,-241.525 0/0:23:23,0:23:871:0:0:0,-6.92369,-78.7014 0/1:51:45,6:45:1759:6:239:-6.52991,0,-143.199 dDocent_Contig_9317 35 . C A 51.7254 . AB=0.230769;ABP=11.1951;AC=1;AF=0.166667;AN=6;AO=4;CIGAR=1X;DP=85;DPB=85;DPRA=0.423913;EPP=11.6962;EPPR=178.9;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=158;QR=3223;RO=81;RPL=0;RPP=11.6962;RPPR=178.9;RPR=4;RUN=1;SAF=4;SAP=11.6962;SAR=0;SRF=81;SRP=178.9;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:46:46,0:46:1824:0:0:0,-13.8474,-164.373 0/1:13:10,3:10:396:3:117:-6.99644,0,-32.0843 0/0:26:25,1:25:1003:1:41:0,-3.73221,-86.4698 dDocent_Contig_9318 20 . A G 946.235 . AB=0.0748299;ABP=233.822;AC=0;AF=0;AN=6;AO=13;CIGAR=1M1D1M1X2M;DP=250;DPB=240.167;DPRA=0;EPP=31.2394;EPPR=417.762;GTI=0;LEN=1;MEANALT=2;MQM=60;MQMR=60;NS=3;NUMALT=2;ODDS=0;PAIRED=1;PAIREDR=0.994764;PAO=0;PQA=0;PQR=0;PRO=0;QA=511;QR=7555;RO=191;RPL=0;RPP=31.2394;RPPR=417.762;RPR=13;RUN=1;SAF=13;SAP=31.2394;SAR=0;SRF=191;SRP=417.762;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|0:147:99,11,37:99:3907:11,37:430,1458:-90.1542,-84.6051,-402.761,0,-286.119,-310.332 0|0:10:7,0,3:7:280:0,3:0,118:-7.99221,-10.0994,-33.1694,0,-23.4649,-22.5618 0|0:93:85,2,6:85:3368:2,6:81,234:0,-18.9047,-295.524,-6.36405,-276.892,-281.765 dDocent_Contig_9319 91 . T C 57.0248 . AB=0.222222;ABP=15.074;AC=1;AF=0.166667;AN=6;AO=4;CIGAR=1X;DP=48;DPB=48;DPRA=1.2;EPP=11.6962;EPPR=98.5551;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=0.795455;PAO=0;PQA=0;PQR=0;PRO=0;QA=140;QR=1525;RO=44;RPL=4;RPP=11.6962;RPPR=98.5551;RPR=0;RUN=1;SAF=4;SAP=11.6962;SAR=0;SRF=44;SRP=98.5551;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:11:11,0:11:379:0:0:0,-3.31133,-34.4412 0/0:19:19,0:19:663:0:0:0,-5.71957,-59.9941 0/1:18:14,4:14:483:4:140:-7.52639,0,-38.3794 dDocent_Contig_9320 78 . T A 2496.76 . AB=0.747899;ABP=66.5304;AC=3;AF=0.5;AN=6;AO=89;CIGAR=3M1X;DP=119;DPB=122.75;DPRA=0;EPP=196.271;EPPR=52.9542;GTI=0;LEN=1;MEANALT=2;MQM=60;MQMR=60;NS=3;NUMALT=2;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=3208;QR=872;RO=23;RPL=89;RPP=196.271;RPPR=52.9542;RPR=0;RUN=1;SAF=89;SAP=196.271;SAR=0;SRF=23;SRP=52.9542;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|1:69:11,3,53:11:415:3,53:111,1927:-154.049,-148.279,-181.389,0,-24.9294,-18.0538 0|1:15:8,0,7:8:312:0,7:0,249:-18.2394,-20.6476,-46.3129,0,-26.0367,-23.9295 0|1:35:4,2,29:4:145:2,29:72,1032:-82.8994,-78.2284,-89.4662,0,-5.96669,-3.11082 dDocent_Contig_9321 7 . T G 67.8456 . AB=0.230769;ABP=19.3799;AC=2;AF=0.5;AN=4;AO=6;CIGAR=1X;DP=26;DPB=26;DPRA=0;EPP=16.0391;EPPR=46.4397;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=2;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=196;QR=775;RO=20;RPL=0;RPP=16.0391;RPPR=46.4397;RPR=6;RUN=1;SAF=6;SAP=16.0391;SAR=0;SRF=20;SRP=46.4397;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:15:11,4:11:425:4:130:-7.5049,0,-34.0888 ./.:.:.:.:.:.:.:. 0/1:11:9,2:9:350:2:66:-2.9552,0,-28.55 dDocent_Contig_9322 9 . A G 261.376 . AB=0.240741;ABP=34.5369;AC=2;AF=0.333333;AN=6;AO=13;CIGAR=1X;DP=61;DPB=61;DPRA=3.85714;EPP=31.2394;EPPR=107.241;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=502;QR=1848;RO=48;RPL=0;RPP=31.2394;RPPR=107.241;RPR=13;RUN=1;SAF=13;SAP=31.2394;SAR=0;SRF=48;SRP=107.241;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:31:22,9:22:845:9:346:-22.1669,0,-67.0398 0/0:7:7,0:7:273:0:0:0,-2.10721,-24.938 0/1:23:19,4:19:730:4:156:-7.4936,0,-59.1068 dDocent_Contig_9323 7 . T A 117.59 . AB=0.194444;ABP=32.2045;AC=1;AF=0.166667;AN=6;AO=7;CIGAR=1X;DP=49;DPB=49;DPRA=5.53846;EPP=18.2106;EPPR=94.2121;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=264;QR=1613;RO=42;RPL=0;RPP=18.2106;RPPR=94.2121;RPR=7;RUN=1;SAF=7;SAP=18.2106;SAR=0;SRF=42;SRP=94.2121;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:36:29,7:29:1119:7:264:-13.2819,0,-90.1755 0/0:5:5,0:5:190:0:0:0,-1.50515,-17.4672 0/0:8:8,0:8:304:0:0:0,-2.40824,-27.7187 dDocent_Contig_9326 95 . G A 172.249 . AB=0.218182;ABP=40.9518;AC=2;AF=0.333333;AN=6;AO=12;CIGAR=1X;DP=69;DPB=69;DPRA=1.96429;EPP=29.068;EPPR=126.784;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=3.46945e-18;PAIRED=1;PAIREDR=0.947368;PAO=0;PQA=0;PQR=0;PRO=0;QA=407;QR=1897;RO=57;RPL=12;RPP=29.068;RPPR=126.784;RPR=0;RUN=1;SAF=12;SAP=29.068;SAR=0;SRF=57;SRP=126.784;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:48:38,10:38:1261:10:337:-16.2072,0,-99.335 0/0:14:14,0:14:468:0:0:0,-4.21442,-42.4405 0/1:7:5,2:5:168:2:70:-4.54019,0,-13.344 dDocent_Contig_9327 85 . G T 213.149 . AB=0.240741;ABP=34.5369;AC=3;AF=0.5;AN=6;AO=13;CIGAR=1X;DP=54;DPB=54;DPRA=0;EPP=31.2394;EPPR=92.0407;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=467;QR=1453;RO=41;RPL=13;RPP=31.2394;RPPR=92.0407;RPR=0;RUN=1;SAF=13;SAP=31.2394;SAR=0;SRF=41;SRP=92.0407;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:31:27,4:27:963:4:140:-3.61228,0,-77.6506 0/1:4:2,2:2:74:2:74:-5.82176,0,-5.82176 0/1:19:12,7:12:416:7:253:-17.4002,0,-32.0521 dDocent_Contig_9329 121 . A T 57.803 . AB=0;ABP=0;AC=2;AF=0.333333;AN=6;AO=2;CIGAR=1X;DP=18;DPB=18;DPRA=0.25;EPP=7.35324;EPPR=37.7539;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=59;QR=548;RO=16;RPL=0;RPP=7.35324;RPPR=37.7539;RPR=2;RUN=1;SAF=0;SAP=7.35324;SAR=2;SRF=0;SRP=37.7539;SRR=16;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:8:8,0:8:269:0:0:0,-2.40824,-24.5376 1/1:2:0,2:0:0:2:59:-5.60384,-0.60206,0 0/0:8:8,0:8:279:0:0:0,-2.40824,-25.449 dDocent_Contig_9331 16 . T C 198.724 . AB=0.222222;ABP=33.1696;AC=2;AF=0.333333;AN=6;AO=10;CIGAR=1X;DP=86;DPB=86;DPRA=0.54878;EPP=24.725;EPPR=168.042;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=402;QR=3022;RO=76;RPL=0;RPP=24.725;RPPR=168.042;RPR=10;RUN=1;SAF=10;SAP=24.725;SAR=0;SRF=76;SRP=168.042;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:41:41,0:41:1617:0:0:0,-12.3422,-145.763 0/1:16:11,5:11:433:5:202:-13.7456,0,-34.5014 0/1:29:24,5:24:972:5:200:-9.64967,0,-79.0466 dDocent_Contig_9334 16 . G C 238.177 . AB=0.188406;ABP=61.1995;AC=1;AF=0.166667;AN=6;AO=13;CIGAR=2X;DP=70;DPB=70;DPRA=34.5;EPP=31.2394;EPPR=111.584;GTI=0;LEN=1;MEANALT=2;MQM=60;MQMR=60;NS=3;NUMALT=2;ODDS=0;PAIRED=1;PAIREDR=0.98;PAO=0;PQA=0;PQR=0;PRO=0;QA=509;QR=1945;RO=50;RPL=0;RPP=31.2394;RPPR=111.584;RPR=13;RUN=1;SAF=13;SAP=31.2394;SAR=0;SRF=50;SRP=111.584;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|1:56:42,10,4:42:1630:10,4:392,160:-19.5819,0,-130.903,-19.0431,-120.733,-151.76 0|0:1:1,0,0:1:40:0,0:0,0:0,-0.30103,-3.99568,-0.30103,-3.99568,-3.99568 0|0:13:7,3,3:7:275:3,3:117,119:-7.66741,-0.159839,-21.8741,0,-13.0046,-21.7183 dDocent_Contig_9335 26 . A C 106.183 . AB=0.384615;ABP=4.51363;AC=2;AF=0.333333;AN=6;AO=5;CIGAR=1X;DP=19;DPB=19;DPRA=1.08333;EPP=13.8677;EPPR=33.4109;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=192;QR=538;RO=14;RPL=0;RPP=13.8677;RPPR=33.4109;RPR=5;RUN=1;SAF=5;SAP=13.8677;SAR=0;SRF=14;SRP=33.4109;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:3:2,1:2:82:1:40:-3.09259,0,-6.87659 0/1:10:6,4:6:244:4:152:-11.037,0,-19.3285 0/0:6:6,0:6:212:0:0:0,-1.80618,-19.4174 dDocent_Contig_9336 12 . A G 1661.65 . AB=0.037037;ABP=204.073;AC=0;AF=0;AN=6;AO=4;CIGAR=1X4M1X;DP=124;DPB=124;DPRA=0;EPP=11.6962;EPPR=109.412;GTI=0;LEN=1;MEANALT=4.5;MQM=24;MQMR=60;NS=3;NUMALT=5;ODDS=1.38778e-17;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=96;QR=1883;RO=49;RPL=0;RPP=11.6962;RPPR=109.412;RPR=4;RUN=1;SAF=4;SAP=11.6962;SAR=0;SRF=49;SRP=109.412;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|0:73:30,2,0,0,2,37:30:1155:2,0,0,2,37:77,0,0,48,1420:-107.336,-110.047,-204.284,-116.367,-204.886,-211.205,-116.367,-204.886,-211.205,-211.205,-113.197,-201.713,-208.032,-208.032,-207.43,0,-88.5975,-94.9177,-94.9177,-91.7493,-83.7796 0|0:16:4,2,0,2,0,8:4:156:2,0,2,0,8:79,0,74,0,309:-24.1772,-18.8783,-31.1016,-25.3813,-31.7037,-38.2059,-19.3303,-25.6522,-32.1543,-31.5522,-25.3813,-31.7037,-38.2059,-32.1543,-38.2059,0,-6.32322,-12.8271,-6.77853,-12.8271,-10.4188 0|0:35:15,0,3,0,2,14:15:572:0,3,0,2,14:0,116,0,48,543:-40.174,-44.6894,-91.6254,-35.1557,-82.0952,-81.1921,-44.6894,-91.6254,-82.0952,-91.6254,-41.5279,-88.4572,-78.9279,-88.4572,-87.8551,0,-46.9971,-37.4632,-46.9971,-43.8344,-42.7827 dDocent_Contig_9337 80 . G A 1603.72 . AB=0.618557;ABP=14.8527;AC=3;AF=0.5;AN=6;AO=60;CIGAR=1X;DP=97;DPB=97;DPRA=0;EPP=133.299;EPPR=83.3548;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=2157;QR=1324;RO=37;RPL=60;RPP=133.299;RPPR=83.3548;RPR=0;RUN=1;SAF=60;SAP=133.299;SAR=0;SRF=37;SRP=83.3548;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:58:17,41:17:621:41:1494:-117.291,0,-38.7643 0/1:14:6,8:6:224:8:294:-22.598,0,-16.3058 0/1:25:14,11:14:479:11:369:-26.0058,0,-35.909 dDocent_Contig_9338 25 . G A 155.173 . AB=0.375;ABP=5.18177;AC=1;AF=0.166667;AN=6;AO=6;CIGAR=1X;DP=40;DPB=40;DPRA=1.33333;EPP=16.0391;EPPR=76.8404;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=242;QR=1346;RO=34;RPL=0;RPP=16.0391;RPPR=76.8404;RPR=6;RUN=1;SAF=6;SAP=16.0391;SAR=0;SRF=34;SRP=76.8404;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:22:22,0:22:873:0:0:0,-6.62266,-78.8781 0/0:2:2,0:2:80:0:0:0,-0.60206,-7.59179 0/1:16:10,6:10:393:6:242:-17.3408,0,-30.9081 dDocent_Contig_9340 51 . G A 100.873 . AB=0.3;ABP=6.48466;AC=3;AF=0.5;AN=6;AO=4;CIGAR=1X;DP=25;DPB=25;DPRA=0.392857;EPP=11.6962;EPPR=48.6112;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=154;QR=831;RO=21;RPL=4;RPP=11.6962;RPPR=48.6112;RPR=0;RUN=1;SAF=4;SAP=11.6962;SAR=0;SRF=21;SRP=48.6112;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:14:14,0:14:566:0:0:0,-4.21442,-51.2828 1/1:1:0,1:0:0:1:39:-3.89656,-0.30103,0 0/1:10:7,3:7:265:3:115:-7.71291,0,-21.1933 dDocent_Contig_9342 29 . A G 191.783 . AB=0.212766;ABP=36.6912;AC=2;AF=0.333333;AN=6;AO=10;CIGAR=1X;DP=53;DPB=53;DPRA=3.91667;EPP=24.725;EPPR=96.3836;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=0;PAIREDR=0.674419;PAO=0;PQA=0;PQR=0;PRO=0;QA=401;QR=1706;RO=43;RPL=0;RPP=24.725;RPPR=96.3836;RPR=10;RUN=1;SAF=10;SAP=24.725;SAR=0;SRF=43;SRP=96.3836;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:28:24,4:24:965:4:160:-6.35459,0,-78.7193 0/0:6:6,0:6:227:0:0:0,-1.80618,-20.7911 0/1:19:13,6:13:514:6:241:-16.3465,0,-40.8847 dDocent_Contig_9343 17 . A G 95.4904 . AB=0.173913;ABP=24.253;AC=4;AF=0.666667;AN=6;AO=5;CIGAR=1X;DP=24;DPB=24;DPRA=0;EPP=13.8677;EPPR=44.2683;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=0.2;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=201;QR=740;RO=19;RPL=0;RPP=13.8677;RPPR=44.2683;RPR=5;RUN=1;SAF=5;SAP=13.8677;SAR=0;SRF=19;SRP=44.2683;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:15:12,3:12:472:3:123:-6.94934,0,-38.3126 1/1:1:0,1:0:0:1:41:-4.09457,-0.30103,0 0/1:8:7,1:7:268:1:37:-1.28959,0,-22.0735 dDocent_Contig_9344 18 . T A 3878.22 . AB=0.818898;ABP=115.192;AC=4;AF=0.666667;AN=6;AO=121;CIGAR=1X2M1X;DP=145;DPB=145;DPRA=0;EPP=265.758;EPPR=55.1256;GTI=0;LEN=1;MEANALT=1;MQM=57.8264;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=0.14876;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=4816;QR=954;RO=24;RPL=0;RPP=265.758;RPPR=55.1256;RPR=121;RUN=1;SAF=121;SAP=265.758;SAR=0;SRF=24;SRP=55.1256;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|1:71:10,61:10:396:61:2429:-197.04,0,-14.6243 1|1:18:1,17:1:40:17:668:-56.4347,-1.42286,0 0|1:56:13,43:13:518:43:1719:-137.87,0,-30.1097 dDocent_Contig_9345 177 . C T 35.6669 . AB=0.285714;ABP=5.80219;AC=1;AF=0.166667;AN=6;AO=4;CIGAR=1X;DP=42;DPB=42;DPRA=0.9;EPP=11.6962;EPPR=85.5263;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=137;QR=1476;RO=38;RPL=4;RPP=11.6962;RPPR=85.5263;RPR=0;RUN=1;SAF=0;SAP=11.6962;SAR=4;SRF=0;SRP=85.5263;SRR=38;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:15:15,0:15:576:0:0:0,-4.51545,-52.1703 0/0:20:18,2:18:709:2:58:0,-0.51473,-58.6279 0/1:7:5,2:5:191:2:79:-5.39003,0,-15.4469 dDocent_Contig_9346 26 . C T 53.3053 . AB=0.3;ABP=6.48466;AC=1;AF=0.166667;AN=6;AO=3;CIGAR=1X1M1X;DP=53;DPB=53;DPRA=0.465116;EPP=9.52472;EPPR=111.584;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=109;QR=1998;RO=50;RPL=0;RPP=9.52472;RPPR=111.584;RPR=3;RUN=1;SAF=3;SAP=9.52472;SAR=0;SRF=50;SRP=111.584;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|0:30:30,0:30:1190:0:0:0,-9.0309,-107.379 0|1:10:7,3:7:282:3:109:-7.15443,0,-22.7427 0|0:13:13,0:13:526:0:0:0,-3.91339,-47.6876 dDocent_Contig_9347 7 . T A 717.759 . AB=0.333333;ABP=24.725;AC=3;AF=0.5;AN=6;AO=30;CIGAR=2X;DP=90;DPB=90;DPRA=0;EPP=68.1545;EPPR=133.299;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=1148;QR=2268;RO=60;RPL=0;RPP=68.1545;RPPR=133.299;RPR=30;RUN=1;SAF=30;SAP=68.1545;SAR=0;SRF=60;SRP=133.299;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|1:44:23,21:23:875:21:801:-59.1704,0,-65.8245 0|1:8:5,3:5:189:3:116:-8.40946,0,-14.9672 0|1:38:32,6:32:1204:6:231:-9.7189,0,-97.2166 dDocent_Contig_9348 15 . G A 611.662 . AB=0.396552;ABP=8.40154;AC=2;AF=0.5;AN=4;AO=23;CIGAR=2X;DP=58;DPB=58;DPRA=0;EPP=52.9542;EPPR=79.0118;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=2;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=907;QR=1378;RO=35;RPL=0;RPP=52.9542;RPPR=79.0118;RPR=23;RUN=1;SAF=23;SAP=52.9542;SAR=0;SRF=35;SRP=79.0118;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|1:45:29,16:29:1144:16:640:-44.388,0,-89.6982 .:.:.:.:.:.:.:. 0|1:13:6,7:6:234:7:267:-20.4771,0,-17.5141 dDocent_Contig_9349 140 . G A 71.4093 . AB=0.333333;ABP=8.07707;AC=1;AF=0.166667;AN=6;AO=7;CIGAR=1X5M;DP=31;DPB=31;DPRA=4.2;EPP=18.2106;EPPR=50.7827;GTI=0;LEN=1;MEANALT=2;MQM=26;MQMR=57.7273;NS=3;NUMALT=2;ODDS=0;PAIRED=0;PAIREDR=0.909091;PAO=0;PQA=0;PQR=0;PRO=0;QA=182;QR=867;RO=22;RPL=0;RPP=18.2106;RPPR=50.7827;RPR=7;RUN=1;SAF=0;SAP=18.2106;SAR=7;SRF=0;SRP=50.7827;SRR=22;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|1:21:12,2,7:12:473:2,7:73,182:-8.66359,-6.30715,-43.7386,0,-32.0179,-35.8468 0|0:4:4,0,0:4:154:0,0:0,0:0,-1.20412,-14.2334,-1.20412,-14.2334,-14.2334 0|0:6:6,0,0:6:240:0,0:0,0:0,-1.80618,-21.9762,-1.80618,-21.9762,-21.9762 dDocent_Contig_9350 25 . T C 56.0871 . AB=0.190476;ABP=20.4855;AC=2;AF=0.333333;AN=6;AO=4;CIGAR=1X;DP=37;DPB=37;DPRA=0.65625;EPP=11.6962;EPPR=74.6689;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=162;QR=1278;RO=33;RPL=0;RPP=11.6962;RPPR=74.6689;RPR=4;RUN=1;SAF=4;SAP=11.6962;SAR=0;SRF=33;SRP=74.6689;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:16:16,0:16:623:0:0:0,-4.81648,-56.4036 0/1:18:16,2:16:615:2:81:-2.26719,0,-50.2627 0/1:3:1,2:1:40:2:81:-6.78264,0,-3.09259 dDocent_Contig_9351 21 . G A 70.1615 . AB=0.153846;ABP=16.5402;AC=3;AF=0.5;AN=6;AO=6;CIGAR=1X;DP=32;DPB=32;DPRA=0.566667;EPP=16.0391;EPPR=59.4686;GTI=0;LEN=1;MEANALT=1;MQM=20.8333;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=0;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=234;QR=1031;RO=26;RPL=0;RPP=16.0391;RPPR=59.4686;RPR=6;RUN=1;SAF=6;SAP=16.0391;SAR=0;SRF=26;SRP=59.4686;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:13:11,2:11:431:2:80:-0.898297,0,-35.2253 1/1:4:0,4:0:0:4:154:-6.82867,-1.20412,0 0/0:15:15,0:15:600:0:0:0,-4.51545,-54.3378 dDocent_Contig_9354 36 . A T 82.0214 . AB=0.138889;ABP=43.7857;AC=1;AF=0.166667;AN=6;AO=5;CIGAR=1X3M10D5M;DP=58;DPB=54.5789;DPRA=18;EPP=13.8677;EPPR=107.241;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=3;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=194;QR=1877;RO=48;RPL=0;RPP=13.8677;RPPR=107.241;RPR=5;RUN=1;SAF=5;SAP=13.8677;SAR=0;SRF=48;SRP=107.241;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|1:36:31,5,0,0:31:1209:5,0,0:194,0,0:-6.99436,0,-98.2596,-16.3263,-99.7647,-115.703,-16.3263,-99.7647,-115.703,-115.703 0|0:2:2,0,0,0:2:80:0,0,0:0,0,0:0,-0.60206,-7.59179,-0.60206,-7.59179,-7.59179,-0.60206,-7.59179,-7.59179,-7.59179 0|0:20:15,0,3,2:15:588:0,3,2:0,113,80:-4.72897,-9.24442,-57.6032,0,-48.3473,-47.4442,-2.64497,-51.012,-41.7562,-50.4099 dDocent_Contig_9356 11 . T A 1059.26 . AB=0.164634;ABP=163.223;AC=1;AF=0.166667;AN=6;AO=27;CIGAR=1M1X13M;DP=212;DPB=215.467;DPRA=0;EPP=61.6401;EPPR=200.614;GTI=0;LEN=1;MEANALT=10.5;MQM=59.8148;MQMR=54.2967;NS=3;NUMALT=8;ODDS=0;PAIRED=0;PAIREDR=0.549451;PAO=0;PQA=0;PQR=0;PRO=0;QA=1060;QR=3561;RO=91;RPL=0;RPP=61.6401;RPPR=200.614;RPR=27;RUN=1;SAF=27;SAP=61.6401;SAR=0;SRF=91;SRP=200.614;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|1:130:61,0,4,7,4,3,1,16,25:61:2378:0,4,7,4,3,1,16,25:0,159,217,154,117,41,622,978:-62.0511,-80.4139,-272.681,-67.4107,-259.679,-258.474,-64.8966,-257.159,-244.157,-255.052,-68.5754,-260.842,-247.84,-245.321,-259.638,-71.0534,-263.321,-250.318,-247.799,-251.482,-262.418,-77.1319,-269.399,-256.397,-253.877,-257.561,-260.039,-269.098,-30.6928,-222.962,-209.96,-207.441,-211.124,-213.602,-219.68,-218.146,0,-192.276,-179.273,-176.755,-180.437,-182.915,-188.994,-142.556,-184.75 0|0:34:10,3,6,2,1,0,3,3,2:10:392:3,6,2,1,0,3,3,2:119,231,62,27,0,122,115,82:-15.8596,-9.07051,-40.1969,0,-22.2317,-30.224,-14.4419,-36.6702,-27.6012,-45.8655,-16.7551,-38.9842,-29.9148,-44.3519,-48.4808,-18.8699,-41.1,-32.0301,-46.4675,-48.7818,-50.8978,-8.98891,-31.2203,-22.1502,-36.5887,-38.9028,-41.0185,-40.1154,-9.63259,-31.8631,-22.7934,-37.2315,-39.5454,-41.6611,-31.7816,-40.758,-12.0984,-34.3295,-25.2595,-39.6977,-42.0118,-44.1277,-34.248,-34.8908,-43.5256 0|0:48:20,2,2,1,13,3,4,0,0:20:791:2,2,1,13,3,4,0,0:81,79,31,500,118,151,0,0:-33.5379,-32.8768,-95.8914,-33.092,-90.0278,-96.1062,-37.3437,-94.2774,-94.4922,-100.657,0,-56.9369,-57.1519,-61.4023,-59.7041,-29.8491,-86.7855,-87.0003,-91.2499,-53.9095,-92.5628,-27.4136,-84.349,-84.5638,-88.8135,-51.4738,-81.3215,-89.8253,-39.5585,-96.4935,-96.7082,-100.958,-63.6175,-93.4659,-91.0294,-103.174,-39.5585,-96.4935,-96.7082,-100.958,-63.6175,-93.4659,-91.0294,-103.174,-103.174 dDocent_Contig_9358 36 . A C 538.989 . AB=0.125;ABP=32.3252;AC=0;AF=0;AN=6;AO=3;CIGAR=1X1M14D1M;DP=63;DPB=60.5294;DPRA=0;EPP=9.52472;EPPR=79.0118;GTI=0;LEN=1;MEANALT=2;MQM=60;MQMR=60;NS=3;NUMALT=2;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=115;QR=1264;RO=35;RPL=0;RPP=9.52472;RPPR=79.0118;RPR=3;RUN=1;SAF=3;SAP=9.52472;SAR=0;SRF=35;SRP=79.0118;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|0:24:15,3,6:15:540:3,6:115,222:-13.6375,-8.71088,-51.8556,0,-34.594,-42.2294 0|0:14:4,0,9:4:153:0,9:0,322:-25.0771,-26.2813,-38.8445,0,-12.5973,-9.88798 0|0:25:16,0,9:16:571:0,9:0,310:-20.7071,-25.5235,-72.0752,0,-46.9004,-44.1911 dDocent_Contig_9359 117 . T C 214.703 . AB=0.314286;ABP=13.4954;AC=2;AF=0.333333;AN=6;AO=11;CIGAR=1X;DP=43;DPB=43;DPRA=2.1875;EPP=26.8965;EPPR=72.4974;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=371;QR=1052;RO=32;RPL=0;RPP=26.8965;RPPR=72.4974;RPR=11;RUN=1;SAF=0;SAP=26.8965;SAR=11;SRF=0;SRP=72.4974;SRR=32;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:21:19,2:19:649:2:69:-0.231033,0,-52.4099 0/0:8:8,0:8:258:0:0:0,-2.40824,-23.5357 0/1:14:5,9:5:145:9:302:-23.2918,0,-9.1231 dDocent_Contig_9360 110 . G A 460.171 . AB=0.431818;ABP=4.78696;AC=2;AF=0.333333;AN=6;AO=19;CIGAR=1X;DP=48;DPB=48;DPRA=5.5;EPP=28.7251;EPPR=65.983;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=3.46945e-18;PAIRED=0.105263;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=690;QR=984;RO=29;RPL=0;RPP=44.2683;RPPR=65.983;RPR=19;RUN=1;SAF=17;SAP=28.7251;SAR=2;SRF=0;SRP=65.983;SRR=29;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:32:17,15:17:586:15:549:-40.1157,0,-43.4324 0/1:12:8,4:8:264:4:141:-9.42422,0,-20.4706 0/0:4:4,0:4:134:0:0:0,-1.20412,-12.3913 dDocent_Contig_9361 29 . G A 72.225 . AB=0.134615;ABP=63.3104;AC=2;AF=0.333333;AN=6;AO=7;CIGAR=1X;DP=53;DPB=53;DPRA=26;EPP=18.2106;EPPR=102.898;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=0.714286;PAIREDR=0.978261;PAO=0;PQA=0;PQR=0;PRO=0;QA=283;QR=1852;RO=46;RPL=0;RPP=18.2106;RPPR=102.898;RPR=7;RUN=1;SAF=7;SAP=18.2106;SAR=0;SRF=46;SRP=102.898;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:33:28,5:28:1120:5:202:-8.62809,0,-91.1395 0/0:1:1,0:1:40:0:0:0,-0.30103,-3.99568 0/1:19:17,2:17:692:2:81:-1.96616,0,-56.8887 dDocent_Contig_9362 19 . T C 55.429 . AB=0.230769;ABP=11.1951;AC=1;AF=0.166667;AN=6;AO=3;CIGAR=1X;DP=71;DPB=71;DPRA=0.448276;EPP=9.52472;EPPR=150.67;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=8.67362e-19;PAIRED=1;PAIREDR=0.970588;PAO=0;PQA=0;PQR=0;PRO=0;QA=121;QR=2617;RO=68;RPL=0;RPP=9.52472;RPPR=150.67;RPR=3;RUN=1;SAF=3;SAP=9.52472;SAR=0;SRF=68;SRP=150.67;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:33:33,0:33:1259:0:0:0,-9.93399,-113.589 0/0:25:25,0:25:974:0:0:0,-7.52575,-87.9681 0/1:13:10,3:10:384:3:121:-7.36681,0,-31.0007 dDocent_Contig_9363 10 . C T 60.3549 . AB=0.333333;ABP=5.18177;AC=1;AF=0.25;AN=4;AO=3;CIGAR=1X2M1X;DP=17;DPB=17;DPRA=1.125;EPP=9.52472;EPPR=33.4109;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=2;NUMALT=1;ODDS=0;PAIRED=0;PAIREDR=0.857143;PAO=0;PQA=0;PQR=0;PRO=0;QA=112;QR=540;RO=14;RPL=0;RPP=9.52472;RPPR=33.4109;RPR=3;RUN=1;SAF=3;SAP=9.52472;SAR=0;SRF=14;SRP=33.4109;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|1:9:6,3:6:233:3:112:-7.73445,0,-18.6303 0|0:8:8,0:8:307:0:0:0,-2.40824,-27.9903 .:.:.:.:.:.:.:. dDocent_Contig_9364 12 . G C 233.494 . AB=0.229167;ABP=33.5919;AC=1;AF=0.166667;AN=6;AO=11;CIGAR=1X;DP=96;DPB=96;DPRA=2;EPP=26.8965;EPPR=187.585;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=0.882353;PAO=0;PQA=0;PQR=0;PRO=0;QA=433;QR=3297;RO=85;RPL=0;RPP=26.8965;RPPR=187.585;RPR=11;RUN=1;SAF=11;SAP=26.8965;SAR=0;SRF=85;SRP=187.585;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:48:37,11:37:1421:11:433:-24.8722,0,-113.681 0/0:15:15,0:15:582:0:0:0,-4.51545,-52.7148 0/0:33:33,0:33:1294:0:0:0,-9.93399,-116.723 dDocent_Contig_9365 8 . A T 283.639 . AB=0.217391;ABP=18.9659;AC=1;AF=0.166667;AN=6;AO=5;CIGAR=1X1M1X1M1X3M1X2M1D1X1M1X3M1X1M1X3M1X1M;DP=38;DPB=37.3846;DPRA=2.875;EPP=13.8677;EPPR=50.7827;GTI=0;LEN=1;MEANALT=2;MQM=60;MQMR=60;NS=3;NUMALT=3;ODDS=6.93889e-18;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=200;QR=853;RO=22;RPL=0;RPP=13.8677;RPPR=50.7827;RPR=5;RUN=1;SAF=5;SAP=13.8677;SAR=0;SRF=22;SRP=50.7827;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|0:23:10,0,5,8:10:393:0,5,8:0,200,315:-22.8986,-25.9089,-58.2326,-9.43111,-41.7558,-40.2506,0,-32.3204,-15.8427,-29.9122 0|1:7:4,3,0,0:4:159:3,0,0:119,0,0:-8.98818,0,-12.5851,-10.1923,-13.4882,-23.2839,-10.1923,-13.4882,-23.2839,-23.2839 0|0:8:8,0,0,0:8:301:0,0,0:0,0,0:0,-2.40824,-27.4424,-2.40824,-27.4424,-27.4424,-2.40824,-27.4424,-27.4424,-27.4424 dDocent_Contig_9366 48 . T A 509.487 . AB=0.486486;ABP=3.06899;AC=2;AF=0.333333;AN=6;AO=18;CIGAR=1X;DP=44;DPB=44;DPRA=2.64286;EPP=42.0968;EPPR=59.4686;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=721;QR=1032;RO=26;RPL=0;RPP=42.0968;RPPR=59.4686;RPR=18;RUN=1;SAF=18;SAP=42.0968;SAR=0;SRF=26;SRP=59.4686;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:32:16,16:16:635:16:642:-48.4795,0,-47.849 0/1:5:3,2:3:121:2:79:-5.99209,0,-9.77505 0/0:7:7,0:7:276:0:0:0,-2.10721,-25.2086 dDocent_Contig_9367 7 . T C 149.296 . AB=0.222222;ABP=27.1378;AC=2;AF=0.333333;AN=6;AO=8;CIGAR=1X;DP=52;DPB=52;DPRA=1.125;EPP=20.3821;EPPR=98.5551;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=310;QR=1675;RO=44;RPL=0;RPP=20.3821;RPPR=98.5551;RPR=8;RUN=1;SAF=8;SAP=20.3821;SAR=0;SRF=44;SRP=98.5551;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:28:21,7:21:800:7:272:-16.4184,0,-63.8968 0/1:8:7,1:7:262:1:38:-1.38903,0,-21.5294 0/0:16:16,0:16:613:0:0:0,-4.81648,-55.5084 dDocent_Contig_9368 7 . T A 503.425 . AB=0.298701;ABP=30.1114;AC=3;AF=0.5;AN=6;AO=23;CIGAR=1X;DP=77;DPB=77;DPRA=0;EPP=52.9542;EPPR=118.098;GTI=0;LEN=1;MEANALT=1.33333;MQM=56.7826;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=0;PAIREDR=0.811321;PAO=0;PQA=0;PQR=0;PRO=0;QA=874;QR=2036;RO=53;RPL=0;RPP=52.9542;RPPR=118.098;RPR=23;RUN=1;SAF=23;SAP=52.9542;SAR=0;SRF=53;SRP=118.098;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:43:25,17:25:964:17:648:-45.0477,0,-74.1179 0/1:8:6,2:6:230:2:73:-4.52286,0,-18.6585 0/1:26:22,4:22:842:4:153:-6.29437,0,-68.2756 dDocent_Contig_9369 36 . C T 383.668 . AB=0.365854;ABP=9.41879;AC=3;AF=0.5;AN=6;AO=15;CIGAR=1X;DP=41;DPB=41;DPRA=0;EPP=35.5824;EPPR=59.4686;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=612;QR=1032;RO=26;RPL=0;RPP=35.5824;RPPR=59.4686;RPR=15;RUN=1;SAF=15;SAP=35.5824;SAR=0;SRF=26;SRP=59.4686;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:10:5,5:5:194:5:204:-15.7337,0,-14.8173 0/1:15:11,4:11:438:4:163:-10.543,0,-35.2606 0/1:16:10,6:10:400:6:245:-17.613,0,-31.5419 dDocent_Contig_9370 19 . G A 280.89 . AB=0.4;ABP=5.61607;AC=3;AF=0.5;AN=6;AO=12;CIGAR=1X;DP=30;DPB=30;DPRA=0;EPP=29.068;EPPR=42.0968;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=453;QR=706;RO=18;RPL=0;RPP=29.068;RPPR=42.0968;RPR=12;RUN=1;SAF=12;SAP=29.068;SAR=0;SRF=18;SRP=42.0968;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:8:7,1:7:280:1:39:-1.48832,0,-23.1639 0/1:19:10,9:10:399:9:355:-26.5929,0,-30.5482 0/1:3:1,2:1:27:2:59:-4.69777,0,-1.79669 dDocent_Contig_9371 13 . T A 172.415 . AB=0.1;ABP=72.4974;AC=1;AF=0.166667;AN=6;AO=5;CIGAR=1M2D1M1X2M1X;DP=67;DPB=63.75;DPRA=0;EPP=13.8677;EPPR=120.27;GTI=0;LEN=1;MEANALT=1.5;MQM=60;MQMR=60;NS=3;NUMALT=2;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=191;QR=2086;RO=54;RPL=0;RPP=13.8677;RPPR=120.27;RPR=5;RUN=1;SAF=5;SAP=13.8677;SAR=0;SRF=54;SRP=120.27;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|1:38:34,4,0:34:1308:4,0:156,0:-2.97815,0,-106.567,-13.2132,-107.771,-120.595 0|0:17:12,0,5:12:463:0,5:0,193:-12.6238,-16.2362,-54.258,0,-38.4074,-36.9022 0|0:12:8,1,3:8:315:1,3:35,116:-7.14739,-6.71702,-32.3357,0,-23.1104,-25.0502 dDocent_Contig_9372 11 . C A 492.506 . AB=0.358491;ABP=12.2288;AC=1;AF=0.166667;AN=6;AO=23;CIGAR=1X;DP=125;DPB=125;DPRA=3.66667;EPP=52.9542;EPPR=215.9;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=0.921569;PAO=0;PQA=0;PQR=0;PRO=0;QA=899;QR=4018;RO=102;RPL=0;RPP=52.9542;RPPR=224.5;RPR=23;RUN=1;SAF=23;SAP=52.9542;SAR=0;SRF=101;SRP=215.9;SRR=1;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:53:34,19:34:1336:19:738:-50.7735,0,-104.546 0/0:15:15,0:15:592:0:0:0,-4.51545,-53.6172 0/0:57:53,4:53:2090:4:161:0,-2.28323,-173.411 dDocent_Contig_9373 1 . N G 108.373 . AB=0;ABP=0;AC=4;AF=1;AN=4;AO=3;CIGAR=1X;DP=3;DPB=3;DPRA=0;EPP=9.52472;EPPR=0;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=0;NS=2;NUMALT=1;ODDS=0;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=109;QR=0;RO=0;RPL=0;RPP=9.52472;RPPR=0;RPR=3;RUN=1;SAF=0;SAP=9.52472;SAR=3;SRF=0;SRP=0;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 1/1:1:0,1:0:0:1:37:-3.69783,-0.30103,0 ./.:.:.:.:.:.:.:. 1/1:2:0,2:0:0:2:72:-6.83672,-0.60206,0 dDocent_Contig_9374 107 . N A 193.577 . AB=0;ABP=0;AC=6;AF=1;AN=6;AO=6;CIGAR=1X;DP=6;DPB=6;DPRA=0;EPP=16.0391;EPPR=0;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=0;NS=3;NUMALT=1;ODDS=1.69407e-21;PAIRED=1;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=199;QR=0;RO=0;RPL=0;RPP=16.0391;RPPR=0;RPR=6;RUN=1;SAF=0;SAP=16.0391;SAR=6;SRF=0;SRP=0;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 1/1:2:0,2:0:0:2:71:-6.74206,-0.60206,0 1/1:3:0,3:0:0:3:99:-9.23744,-0.90309,0 1/1:1:0,1:0:0:1:29:-2.89966,-0.30103,0 dDocent_Contig_9376 13 . G A 2206.16 . AB=0.523077;ABP=3.61163;AC=4;AF=0.666667;AN=6;AO=68;CIGAR=1M1X5M;DP=130;DPB=140.286;DPRA=0;EPP=150.67;EPPR=61.6401;GTI=0;LEN=1;MEANALT=4.66667;MQM=58.4265;MQMR=60;NS=3;NUMALT=5;ODDS=0;PAIRED=0.852941;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=2713;QR=1047;RO=27;RPL=0;RPP=150.67;RPPR=61.6401;RPR=68;RUN=1;SAF=68;SAP=150.67;SAR=0;SRF=27;SRP=61.6401;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 1|1:50:8,3,11,1,3,24:8:306:3,11,1,3,24:121,440,38,120,964:-88.1388,-80.5728,-104.776,-54.333,-69.4638,-76.127,-87.431,-102.563,-76.3223,-112.236,-80.662,-95.7936,-69.5531,-102.652,-104.865,-11.1145,-26.2432,0,-33.1025,-26.3326,-28.9937 0|1:45:7,1,3,3,0,27:7:279:1,3,3,0,27:40,120,122,0,1075:-86.1416,-84.9537,-107.629,-78.3666,-98.048,-100.44,-78.1847,-97.8662,-91.2791,-100.258,-88.2489,-107.93,-101.343,-101.161,-111.225,0,-19.6823,-13.0949,-12.9123,-22.9776,-14.8498 0|1:35:12,0,2,4,0,17:12:462:0,2,4,0,17:0,81,142,0,674:-51.858,-55.4703,-93.3978,-48.791,-86.7189,-86.1168,-43.9126,-81.837,-75.1582,-80.6329,-55.4703,-93.3978,-86.7189,-81.837,-93.3978,0,-37.938,-31.2571,-26.3803,-37.938,-32.8205 dDocent_Contig_9377 37 . C A 428.867 . AB=0.290323;ABP=26.6864;AC=2;AF=0.333333;AN=6;AO=18;CIGAR=1X;DP=70;DPB=70;DPRA=3.875;EPP=42.0968;EPPR=115.927;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=715;QR=2028;RO=52;RPL=0;RPP=42.0968;RPPR=115.927;RPR=18;RUN=1;SAF=18;SAP=42.0968;SAR=0;SRF=52;SRP=115.927;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:43:28,15:28:1098:15:597:-41.1262,0,-86.1706 0/0:8:8,0:8:321:0:0:0,-2.40824,-29.2585 0/1:19:16,3:16:609:3:118:-5.28332,0,-49.416 dDocent_Contig_9378 15 . A G 218.658 . AB=0.411765;ABP=4.1599;AC=4;AF=0.666667;AN=6;AO=8;CIGAR=1X;DP=18;DPB=18;DPRA=0;EPP=20.3821;EPPR=24.725;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=325;QR=402;RO=10;RPL=0;RPP=20.3821;RPPR=24.725;RPR=8;RUN=1;SAF=8;SAP=20.3821;SAR=0;SRF=10;SRP=24.725;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:11:5,6:5:198:6:245:-19.1181,0,-14.8844 1/1:1:0,1:0:0:1:40:-3.99568,-0.30103,0 0/1:6:5,1:5:204:1:40:-2.1895,0,-16.9379 dDocent_Contig_9379 10 . C T 1340.99 . AB=0.0864198;ABP=123.353;AC=0;AF=0;AN=6;AO=7;CIGAR=1X7M2X5M1X11M1X;DP=88;DPB=86.3214;DPRA=0;EPP=18.2106;EPPR=44.2683;GTI=0;LEN=1;MEANALT=6.5;MQM=60;MQMR=60;NS=3;NUMALT=6;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=278;QR=748;RO=19;RPL=0;RPP=18.2106;RPPR=44.2683;RPR=7;RUN=1;SAF=7;SAP=18.2106;SAR=0;SRF=19;SRP=44.2683;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|0:49:13,0,6,3,19,0,2:13:516:0,6,3,19,0,2:0,238,113,700,0,82:-53.3121,-57.2255,-99.7106,-37.6299,-80.1172,-78.311,-47.966,-90.4515,-70.858,-89.5485,0,-42.4858,-22.8925,-33.2277,-36.7662,-57.2255,-99.7106,-80.1172,-90.4515,-42.4858,-99.7106,-50.4553,-92.9412,-73.3475,-83.6821,-35.7161,-92.9412,-92.3392 0|0:7:0,0,0,3,0,4,0:0:0:0,0,3,0,4,0:0,0,121,0,155,0:-23.1019,-23.1019,-23.1019,-23.1019,-23.1019,-23.1019,-13.1212,-13.1212,-13.1212,-12.2181,-23.1019,-23.1019,-23.1019,-13.1212,-23.1019,-10.3769,-10.3769,-10.3769,0,-10.3769,-9.17278,-23.1019,-23.1019,-23.1019,-13.1212,-23.1019,-10.3769,-23.1019 0|0:32:6,2,1,0,3,0,20:6:232:2,1,0,3,0,20:80,40,0,109,0,790:-63.2081,-58.4234,-76.8755,-61.7189,-74.1821,-80.4719,-65.0143,-77.4775,-80.7729,-84.0683,-56.1175,-68.5801,-71.8754,-75.1707,-74.2676,-65.0143,-77.4775,-80.7729,-84.0683,-75.1707,-84.0683,0,-12.4642,-15.761,-19.0575,-10.1639,-19.0575,-13.0369 dDocent_Contig_9381 43 . G A 49.5092 . AB=0.122449;ABP=63.6786;AC=2;AF=0.333333;AN=6;AO=7;CIGAR=1X;DP=65;DPB=65;DPRA=0;EPP=18.2106;EPPR=128.956;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=280;QR=2239;RO=58;RPL=0;RPP=18.2106;RPPR=128.956;RPR=7;RUN=1;SAF=7;SAP=18.2106;SAR=0;SRF=58;SRP=128.956;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:39:34,5:34:1302:5:198:-6.4563,0,-105.69 0/1:10:9,1:9:340:1:41:-1.08427,0,-27.9409 0/0:16:15,1:15:597:1:41:0,-0.721913,-49.9704 dDocent_Contig_9382 21 . C T 684.987 . AB=0.235714;ABP=87.9459;AC=3;AF=0.5;AN=6;AO=33;CIGAR=1X;DP=140;DPB=140;DPRA=0;EPP=74.6689;EPPR=235.358;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=1279;QR=4234;RO=107;RPL=0;RPP=74.6689;RPPR=235.358;RPR=33;RUN=1;SAF=33;SAP=74.6689;SAR=0;SRF=107;SRP=235.358;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:107:83,24:83:3275:24:937:-52.4226,0,-262.602 0/1:3:1,2:1:40:2:78:-6.50038,0,-3.09259 0/1:30:23,7:23:919:7:264:-15.087,0,-73.9828 dDocent_Contig_9383 57 . T G 2831.4 . AB=0.730159;ABP=60.9852;AC=3;AF=0.5;AN=6;AO=92;CIGAR=3M1X6M;DP=126;DPB=118;DPRA=0;EPP=202.786;EPPR=48.6112;GTI=0;LEN=1;MEANALT=3;MQM=60;MQMR=60;NS=3;NUMALT=2;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=3572;QR=775;RO=21;RPL=92;RPP=202.786;RPPR=48.6112;RPR=0;RUN=1;SAF=92;SAP=202.786;SAR=0;SRF=21;SRP=48.6112;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|1:60:10,3,45:10:369:3,45:106,1731:-139.1,-133.48,-162.748,0,-21.5517,-16.6345 0|1:38:3,4,30:3:117:4,30:124,1165:-95.1636,-86.1264,-94.5403,-0.275311,0,-0.897811 0|1:28:8,3,17:8:289:3,17:108,676:-53.2796,-46.8816,-69.5501,0,-14.7724,-18.4665 dDocent_Contig_9384 35 . C A 1384.15 . AB=0.455357;ABP=4.94911;AC=3;AF=0.5;AN=6;AO=51;CIGAR=1X;DP=112;DPB=112;DPRA=0;EPP=113.755;EPPR=135.47;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=6.93889e-18;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=1963;QR=2456;RO=61;RPL=0;RPP=113.755;RPPR=135.47;RPR=51;RUN=1;SAF=51;SAP=113.755;SAR=0;SRF=61;SRP=135.47;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:79:48,31:48:1933:31:1196:-84.1401,0,-150.383 0/1:10:3,7:3:121:7:269:-21.5621,0,-8.2699 0/1:23:10,13:10:402:13:498:-38.2353,0,-29.6138 dDocent_Contig_9385 46 . C T 338.35 . AB=0.246377;ABP=41.5618;AC=3;AF=0.5;AN=6;AO=17;CIGAR=1X;DP=69;DPB=69;DPRA=0;EPP=39.9253;EPPR=115.927;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=655;QR=2075;RO=52;RPL=0;RPP=39.9253;RPPR=115.927;RPR=17;RUN=1;SAF=17;SAP=39.9253;SAR=0;SRF=52;SRP=115.927;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:39:35,4:35:1395:4:155:-2.58419,0,-114.069 0/1:5:1,4:1:40:4:156:-12.9113,0,-2.49053 0/1:25:16,9:16:640:9:344:-23.7852,0,-50.4071 dDocent_Contig_9386 180 . C A 65.7212 . AB=0.190476;ABP=20.4855;AC=1;AF=0.166667;AN=6;AO=4;CIGAR=1X;DP=32;DPB=32;DPRA=3.81818;EPP=11.6962;EPPR=63.8115;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=156;QR=1075;RO=28;RPL=4;RPP=11.6962;RPPR=63.8115;RPR=0;RUN=1;SAF=0;SAP=11.6962;SAR=4;SRF=0;SRP=63.8115;SRR=28;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:21:17,4:17:649:4:156:-8.09481,0,-52.4078 0/0:8:8,0:8:306:0:0:0,-2.40824,-27.896 0/0:3:3,0:3:120:0:0:0,-0.90309,-11.1873 dDocent_Contig_9388 39 . G A 249.011 . AB=0.128205;ABP=49.8362;AC=2;AF=0.333334;AN=6;AO=8;CIGAR=1X1M;DP=86;DPB=86;DPRA=0;EPP=20.3821;EPPR=150.67;GTI=0;LEN=1;MEANALT=2;MQM=60;MQMR=60;NS=3;NUMALT=2;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=314;QR=2684;RO=68;RPL=0;RPP=20.3821;RPPR=150.67;RPR=8;RUN=1;SAF=8;SAP=20.3821;SAR=0;SRF=68;SRP=150.67;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|0:47:42,2,3:42:1695:2,3:81,117:0,-5.95813,-145.096,-3.03631,-136.083,-141.859 0|1:10:5,1,4:5:204:1,4:40,158:-11.4915,-9.70059,-26.2381,0,-13.5442,-15.6339 0|1:29:21,7,1:21:785:7,1:282,39:-16.9325,0,-62.1369,-20.0498,-61.0375,-83.9867 dDocent_Contig_9389 14 . A T 174.51 . AB=0.538462;ABP=3.17734;AC=2;AF=0.333333;AN=6;AO=7;CIGAR=1X;DP=22;DPB=22;DPRA=0.722222;EPP=18.2106;EPPR=35.5824;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=268;QR=590;RO=15;RPL=0;RPP=18.2106;RPPR=35.5824;RPR=7;RUN=1;SAF=7;SAP=18.2106;SAR=0;SRF=15;SRP=35.5824;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:11:5,6:5:204:6:228:-17.5672,0,-15.4327 0/1:2:1,1:1:39:1:40:-3.39362,0,-3.2945 0/0:9:9,0:9:347:0:0:0,-2.70927,-31.5845 dDocent_Contig_9391 19 . C T 309.287 . AB=0.307692;ABP=15.538;AC=4;AF=0.666667;AN=6;AO=13;CIGAR=1X;DP=40;DPB=40;DPRA=0;EPP=31.2394;EPPR=61.6401;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=501;QR=1096;RO=27;RPL=0;RPP=31.2394;RPPR=61.6401;RPR=13;RUN=1;SAF=13;SAP=31.2394;SAR=0;SRF=27;SRP=61.6401;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:20:16,4:16:648:4:152:-8.02722,0,-52.6313 1/1:1:0,1:0:0:1:38:-3.79727,-0.30103,0 0/1:19:11,8:11:448:8:311:-22.6263,0,-34.9564 dDocent_Contig_9392 17 . C G 6046.71 . AB=0.2;ABP=10.8276;AC=0;AF=0;AN=6;AO=2;CIGAR=2M1X1M1D2M1X;DP=298;DPB=264.25;DPRA=0;EPP=7.35324;EPPR=109.412;GTI=0;LEN=1;MEANALT=3;MQM=60;MQMR=60;NS=3;NUMALT=4;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=80;QR=1934;RO=49;RPL=0;RPP=7.35324;RPPR=109.412;RPR=2;RUN=1;SAF=2;SAP=7.35324;SAR=0;SRF=49;SRP=109.412;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|0:227:38,16,0,142,23:38:1497:16,0,142,23:643,0,5644,916:-453.211,-411.664,-530.003,-464.65,-534.82,-587.805,0,-70.1671,-123.154,-80.4073,-389.225,-459.395,-512.381,-47.7286,-505.457 0|0:10:0,0,2,4,4:0:0:0,2,4,4:0,80,161,156:-26.0882,-26.0882,-26.0882,-19.4973,-19.4973,-18.8952,-12.8155,-12.8155,-6.22198,-11.6113,-13.2708,-13.2708,-6.68142,0,-12.0666 0|0:61:11,3,0,41,4:11:437:3,0,41,4:113,0,1630,150:-130.895,-124.95,-160.023,-134.206,-160.926,-170.182,0,-26.7288,-35.9839,-23.6416,-121.927,-148.646,-157.903,-23.7067,-156.698 dDocent_Contig_9394 7 . T C 3651.92 . AB=0.524017;ABP=4.15767;AC=4;AF=0.666667;AN=6;AO=120;CIGAR=1X4M;DP=229;DPB=229;DPRA=0;EPP=263.587;EPPR=131.127;GTI=0;LEN=1;MEANALT=2;MQM=59.6667;MQMR=60;NS=3;NUMALT=2;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=4611;QR=2259;RO=59;RPL=0;RPP=263.587;RPPR=131.127;RPR=120;RUN=1;SAF=120;SAP=263.587;SAR=0;SRF=59;SRP=131.127;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 1|1:139:29,32,78:29:1103:32,78:1241,3003:-247.785,-156.069,-236.895,-9.98882,0,-76.9673 0|1:25:9,2,14:9:342:2,14:78,529:-40.6428,-37.0259,-64.4719,0,-21.7168,-23.8286 0|1:65:21,16,28:21:814:16,28:606,1079:-82.2865,-39.711,-101.772,0,-17.9892,-58.4557 dDocent_Contig_9395 98 . N C 520.776 . AB=0;ABP=0;AC=6;AF=1;AN=6;AO=16;CIGAR=1X;DP=16;DPB=16;DPRA=0;EPP=37.7539;EPPR=0;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=0;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=562;QR=0;RO=0;RPL=16;RPP=37.7539;RPPR=0;RPR=0;RUN=1;SAF=16;SAP=37.7539;SAR=0;SRF=0;SRP=0;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 1/1:7:0,7:0:0:7:250:-22.8468,-2.10721,0 1/1:3:0,3:0:0:3:99:-9.23705,-0.90309,0 1/1:6:0,6:0:0:6:213:-19.5164,-1.80618,0 dDocent_Contig_9396 28 . C T 460.028 . AB=0.287879;ABP=28.8048;AC=2;AF=0.333333;AN=6;AO=19;CIGAR=1X;DP=67;DPB=67;DPRA=33;EPP=44.2683;EPPR=107.241;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=763;QR=1906;RO=48;RPL=0;RPP=44.2683;RPPR=107.241;RPR=19;RUN=1;SAF=19;SAP=44.2683;SAR=0;SRF=48;SRP=107.241;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:42:30,12:30:1205:12:478:-30.7253,0,-96.0802 0/0:1:1,0:1:41:0:0:0,-0.30103,-4.09457 0/1:24:17,7:17:660:7:285:-18.7997,0,-52.5033 dDocent_Contig_9397 32 . G A 136.119 . AB=0.195122;ABP=36.112;AC=2;AF=0.333333;AN=6;AO=16;CIGAR=1X;DP=156;DPB=156;DPRA=0;EPP=37.7539;EPPR=304.845;GTI=0;LEN=1;MEANALT=1.33333;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=0.532374;PAO=0;PQA=0;PQR=0;PRO=0;QA=619;QR=5501;RO=139;RPL=0;RPP=37.7539;RPPR=304.845;RPR=16;RUN=1;SAF=16;SAP=37.7539;SAR=0;SRF=139;SRP=304.845;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:115:106,8:106:4189:8:300:0,-7.08087,-349.656 0/1:13:11,2:11:429:2:79:-3.58385,0,-35.0488 0/1:28:22,6:22:883:6:240:-13.5472,0,-71.3432 dDocent_Contig_9398 65 . T C 154.764 . AB=0.242424;ABP=22.0271;AC=2;AF=0.5;AN=4;AO=8;CIGAR=1X;DP=33;DPB=33;DPRA=0;EPP=20.3821;EPPR=57.2971;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=2;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=0.88;PAO=0;PQA=0;PQR=0;PRO=0;QA=315;QR=975;RO=25;RPL=8;RPP=20.3821;RPPR=57.2971;RPR=0;RUN=1;SAF=8;SAP=20.3821;SAR=0;SRF=25;SRP=57.2971;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:17:14,3:14:542:3:120:-6.0698,0,-43.9987 ./.:.:.:.:.:.:.:. 0/1:16:11,5:11:433:5:195:-13.1056,0,-34.5022 dDocent_Contig_9399 95 . A T 229.193 . AB=0.34375;ABP=9.79615;AC=2;AF=0.5;AN=4;AO=11;CIGAR=1X;DP=32;DPB=32;DPRA=0;EPP=26.8965;EPPR=48.6112;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=2;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=395;QR=752;RO=21;RPL=11;RPP=26.8965;RPPR=48.6112;RPR=0;RUN=1;SAF=11;SAP=26.8965;SAR=0;SRF=21;SRP=48.6112;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:19:14,5:14:497:5:180:-10.8325,0,-39.3446 ./.:.:.:.:.:.:.:. 0/1:13:7,6:7:255:6:215:-15.7858,0,-19.3886 dDocent_Contig_9400 37 . A G 110.419 . AB=0.127907;ABP=106.433;AC=2;AF=0.333333;AN=6;AO=11;CIGAR=1X;DP=94;DPB=94;DPRA=5.375;EPP=26.8965;EPPR=183.243;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=6.93889e-18;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=441;QR=3260;RO=83;RPL=0;RPP=26.8965;RPPR=183.243;RPR=11;RUN=1;SAF=11;SAP=26.8965;SAR=0;SRF=83;SRP=183.243;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:50:45,5:45:1763:5:200:-3.32842,0,-143.834 0/0:8:8,0:8:324:0:0:0,-2.40824,-29.5294 0/1:36:30,6:30:1173:6:241:-11.2296,0,-95.0034 dDocent_Contig_9401 61 . G A 125.014 . AB=0.176471;ABP=49.3776;AC=3;AF=0.5;AN=6;AO=9;CIGAR=1X;DP=51;DPB=51;DPRA=0;EPP=22.5536;EPPR=94.2121;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=343;QR=1536;RO=42;RPL=9;RPP=22.5536;RPPR=94.2121;RPR=0;RUN=1;SAF=9;SAP=22.5536;SAR=0;SRF=42;SRP=94.2121;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:17:14,3:14:533:3:114:-5.51447,0,-43.1952 0/1:13:9,4:9:326:4:156:-10.5039,0,-25.7692 0/1:21:19,2:19:677:2:73:-0.609669,0,-54.9361 dDocent_Contig_9404 12 . G A 338.091 . AB=0.182796;ABP=84.2887;AC=2;AF=0.333333;AN=6;AO=17;CIGAR=5M1X;DP=120;DPB=122.333;DPRA=1.72222;EPP=39.9253;EPPR=204.957;GTI=0;LEN=1;MEANALT=3;MQM=60;MQMR=60;NS=3;NUMALT=2;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=693;QR=3610;RO=93;RPL=0;RPP=39.9253;RPPR=204.957;RPR=17;RUN=1;SAF=17;SAP=39.9253;SAR=0;SRF=93;SRP=204.957;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|1:51:35,2,11:35:1357:2,11:76,448:-26.4363,-30.7424,-141.614,0,-105.254,-108.175 0|1:42:31,5,6:31:1203:5,6:193,245:-10.8956,-4.38695,-101.708,0,-82.9942,-97.0384 0|0:27:27,0,0:27:1050:0,0:0,0:0,-8.12781,-94.8059,-8.12781,-94.8059,-94.8059 dDocent_Contig_9405 25 . G A 194.578 . AB=0.117647;ABP=24.5973;AC=3;AF=0.5;AN=6;AO=7;CIGAR=1X;DP=45;DPB=45;DPRA=0.478261;EPP=18.2106;EPPR=85.5263;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=281;QR=1523;RO=38;RPL=0;RPP=18.2106;RPPR=85.5263;RPR=7;RUN=1;SAF=7;SAP=18.2106;SAR=0;SRF=38;SRP=85.5263;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:17:15,2:15:599:2:82:-2.66217,0,-49.1294 1/1:5:0,5:0:0:5:199:-18.2881,-1.50515,0 0/0:23:23,0:23:924:0:0:0,-6.92369,-83.4655 dDocent_Contig_9406 98 . N A 290.657 . AB=0;ABP=0;AC=4;AF=1;AN=4;AO=9;CIGAR=1X;DP=9;DPB=9;DPRA=0;EPP=22.5536;EPPR=0;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=0;NS=2;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=312;QR=0;RO=0;RPL=9;RPP=22.5536;RPPR=0;RPR=0;RUN=1;SAF=9;SAP=22.5536;SAR=0;SRF=0;SRP=0;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 1/1:3:0,3:0:0:3:105:-9.79616,-0.90309,0 1/1:6:0,6:0:0:6:207:-18.9682,-1.80618,0 ./.:.:.:.:.:.:.:. dDocent_Contig_9407 30 . 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AB=0.368421;ABP=11.5819;AC=3;AF=0.5;AN=6;AO=21;CIGAR=1X;DP=57;DPB=57;DPRA=0;EPP=48.6112;EPPR=81.1833;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=792;QR=1357;RO=36;RPL=0;RPP=48.6112;RPPR=81.1833;RPR=21;RUN=1;SAF=21;SAP=48.6112;SAR=0;SRF=36;SRP=81.1833;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:38:25,13:25:945:13:481:-32.1889,0,-73.9236 0/1:2:1,1:1:39:1:38:-3.19521,0,-3.2945 0/1:17:10,7:10:373:7:273:-19.8205,0,-28.8001 dDocent_Contig_9411 83 . A G 205.525 . AB=0.323529;ABP=12.2071;AC=2;AF=0.5;AN=4;AO=11;CIGAR=1X;DP=34;DPB=34;DPRA=0;EPP=26.8965;EPPR=52.9542;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=2;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=375;QR=783;RO=23;RPL=11;RPP=26.8965;RPPR=52.9542;RPR=0;RUN=1;SAF=11;SAP=26.8965;SAR=0;SRF=23;SRP=52.9542;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:13:11,2:11:370:2:67:-2.44965,0,-29.7105 ./.:.:.:.:.:.:.:. 0/1:21:12,9:12:413:9:308:-21.7308,0,-31.1791 dDocent_Contig_9413 57 . G A 607.816 . AB=0.458333;ABP=3.73412;AC=2;AF=0.333333;AN=6;AO=23;CIGAR=1X;DP=63;DPB=63;DPRA=0;EPP=52.9542;EPPR=89.8692;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=0.9;PAO=0;PQA=0;PQR=0;PRO=0;QA=906;QR=1573;RO=40;RPL=23;RPP=52.9542;RPPR=89.8692;RPR=0;RUN=1;SAF=23;SAP=52.9542;SAR=0;SRF=40;SRP=89.8692;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:45:24,21:24:937:21:826:-61.1035,0,-71.0856 0/1:3:2,1:2:81:1:41:-3.19148,0,-6.78264 0/0:15:14,1:14:555:1:39:0,-0.618885,-46.3939 dDocent_Contig_9415 15 . C A 701.605 . 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T A 34.718 . AB=0.285714;ABP=5.80219;AC=1;AF=0.166667;AN=6;AO=2;CIGAR=1X;DP=68;DPB=68;DPRA=0.229508;EPP=7.35324;EPPR=76.807;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=59;NS=3;NUMALT=1;ODDS=1.73472e-18;PAIRED=1;PAIREDR=0.769231;PAO=0;PQA=0;PQR=0;PRO=0;QA=78;QR=2511;RO=65;RPL=0;RPP=7.35324;RPPR=144.156;RPR=2;RUN=1;SAF=2;SAP=7.35324;SAR=0;SRF=56;SRP=76.807;SRR=9;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:42:42,0:42:1662:0:0:0,-12.6433,-147.598 0/1:7:5,2:5:140:2:78:-5.29557,0,-10.7578 0/0:19:18,0:18:709:0:0:0,-5.41854,-63.7227 dDocent_Contig_9418 10 . A G 38.4786 . AB=0.119048;ABP=55.9529;AC=1;AF=0.166667;AN=6;AO=6;CIGAR=1X;DP=96;DPB=96;DPRA=6.35714;EPP=16.0391;EPPR=198.443;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=237;QR=3601;RO=90;RPL=0;RPP=16.0391;RPPR=198.443;RPR=6;RUN=1;SAF=6;SAP=16.0391;SAR=0;SRF=90;SRP=198.443;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:42:37,5:37:1487:5:196:-5.37067,0,-121.433 0/0:7:7,0:7:278:0:0:0,-2.10721,-25.3898 0/0:47:46,1:46:1836:1:41:0,-10.0538,-161.355 dDocent_Contig_9419 183 . G A 123.942 . AB=0.416667;ABP=3.73412;AC=1;AF=0.166667;AN=6;AO=5;CIGAR=1X;DP=23;DPB=23;DPRA=2.18182;EPP=13.8677;EPPR=42.0968;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=194;QR=717;RO=18;RPL=5;RPP=13.8677;RPPR=42.0968;RPR=0;RUN=1;SAF=0;SAP=13.8677;SAR=5;SRF=0;SRP=42.0968;SRR=18;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:8:8,0:8:323:0:0:0,-2.40824,-29.4384 0/0:3:3,0:3:111:0:0:0,-0.90309,-10.3505 0/1:12:7,5:7:283:5:194:-14.2179,0,-22.2306 dDocent_Contig_9423 140 . G A 1029.37 . AB=0.455696;ABP=4.35716;AC=4;AF=0.666667;AN=6;AO=39;CIGAR=1X;DP=82;DPB=82;DPRA=0;EPP=87.6977;EPPR=96.3836;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=1436;QR=1618;RO=43;RPL=0;RPP=87.6977;RPPR=96.3836;RPR=39;RUN=1;SAF=0;SAP=87.6977;SAR=39;SRF=0;SRP=96.3836;SRR=43;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:50:29,21:29:1075:21:782:-55.6499,0,-81.9994 1/1:3:0,3:0:0:3:106:-9.8877,-0.90309,0 0/1:29:14,15:14:543:15:548:-40.9223,0,-40.4859 dDocent_Contig_9424 7 . T A 63.5843 . AB=0.147059;ABP=39.7976;AC=1;AF=0.166667;AN=6;AO=5;CIGAR=1M1X2M1X;DP=37;DPB=36.4;DPRA=5.66667;EPP=13.8677;EPPR=63.8115;GTI=0;LEN=1;MEANALT=2;MQM=60;MQMR=60;NS=3;NUMALT=2;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=190;QR=1067;RO=28;RPL=0;RPP=13.8677;RPPR=63.8115;RPR=5;RUN=1;SAF=5;SAP=13.8677;SAR=0;SRF=28;SRP=63.8115;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|1:22:18,3,0:18:686:3,0:112,0:-3.73935,0,-55.3628,-9.15789,-56.2659,-65.4351 0|0:12:7,2,3:7:265:2,3:78,102:-6.13675,-1.8123,-22.9625,0,-15.3022,-20.8134 0|0:3:3,0,0:3:116:0,0:0,0:0,-0.90309,-10.8177,-0.90309,-10.8177,-10.8177 dDocent_Contig_9427 111 . A G 124.515 . AB=0.764706;ABP=13.3567;AC=1;AF=0.166667;AN=6;AO=20;CIGAR=1X1M1X;DP=66;DPB=66;DPRA=0;EPP=46.4397;EPPR=100.727;GTI=0;LEN=1;MEANALT=1.33333;MQM=18.9;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=0.05;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=661;QR=1550;RO=45;RPL=0;RPP=46.4397;RPPR=100.727;RPR=20;RUN=1;SAF=0;SAP=46.4397;SAR=20;SRF=0;SRP=100.727;SRR=45;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|0:22:18,4:18:618:4:140:0,-0.448636,-49.7695 0|1:17:3,13:3:105:13:424:-14.2745,0,-4.62982 0|0:27:24,3:24:827:3:97:0,-1.72719,-68.347 dDocent_Contig_9429 8 . A G 9250.45 . AB=0.544186;ABP=10.3024;AC=3;AF=0.5;AN=6;AO=234;CIGAR=1X1M1X4M;DP=430;DPB=430;DPRA=0;EPP=511.135;EPPR=37.7539;GTI=0;LEN=1;MEANALT=13;MQM=56.265;MQMR=60;NS=3;NUMALT=5;ODDS=0;PAIRED=0.888889;PAIREDR=0.75;PAO=0;PQA=0;PQR=0;PRO=0;QA=8827;QR=608;RO=16;RPL=0;RPP=511.135;RPPR=37.7539;RPR=234;RUN=1;SAF=234;SAP=511.135;SAR=0;SRF=16;SRP=37.7539;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 1|0:76:4,4,0,36,7,19:4:157:4,0,36,7,19:150,0,1327,272,768:-156.644,-146.637,-158.347,-157.848,-159.551,-170.761,-50.2126,-51.9181,-63.1256,-52.2886,-135.919,-137.622,-148.832,-41.1984,-146.725,-94.7261,-96.4299,-107.64,0,-85.7101,-101.921 1|0:188:6,15,16,96,0,31:6:221:15,16,96,0,31:557,591,3659,0,1246:-379.809,-337.165,-350.718,-337.959,-311.578,-351.212,-84.2504,-57.8703,-58.6678,-73.4206,-381.615,-355.234,-356.028,-102.32,-399.684,-279.303,-252.922,-253.717,0,-297.373,-288.041 1|0:166:6,1,2,102,0,31:6:230:1,2,102,0,31:38,77,3841,0,1250:-394.115,-392.805,-411.381,-389.599,-405.36,-407.874,-83.6961,-99.4557,-96.2501,-71.8669,-395.921,-411.682,-408.476,-102.572,-414.798,-293.352,-309.113,-305.907,0,-312.229,-302.897 dDocent_Contig_9430 43 . C T 226.591 . AB=0.177215;ABP=74.504;AC=2;AF=0.333333;AN=6;AO=14;CIGAR=1X;DP=83;DPB=83;DPRA=9.875;EPP=33.4109;EPPR=152.842;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=547;QR=2745;RO=69;RPL=0;RPP=33.4109;RPPR=152.842;RPR=14;RUN=1;SAF=14;SAP=33.4109;SAR=0;SRF=69;SRP=152.842;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:55:44,11:44:1744:11:427:-22.2177,0,-140.62 0/0:4:4,0:4:155:0:0:0,-1.20412,-14.3237 0/1:24:21,3:21:846:3:120:-3.96259,0,-69.2269 dDocent_Contig_9431 98 . N T 382.388 . AB=0;ABP=0;AC=6;AF=1;AN=6;AO=12;CIGAR=2X;DP=12;DPB=12;DPRA=0;EPP=29.068;EPPR=0;GTI=0;LEN=1;MEANALT=1;MQM=59.6667;MQMR=0;NS=3;NUMALT=1;ODDS=0;PAIRED=0.916667;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=407;QR=0;RO=0;RPL=12;RPP=29.068;RPPR=0;RPR=0;RUN=1;SAF=12;SAP=29.068;SAR=0;SRF=0;SRP=0;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 1|1:5:0,5:0:0:5:174:-16.0015,-1.50515,0 1|1:3:0,3:0:0:3:110:-10.261,-0.90309,0 1|1:4:0,4:0:0:4:123:-11.3741,-1.20412,0 dDocent_Contig_9432 11 . G A 436.582 . AB=0.25641;ABP=43.2104;AC=3;AF=0.5;AN=6;AO=20;CIGAR=1X5M;DP=78;DPB=79;DPRA=0;EPP=46.4397;EPPR=115.927;GTI=0;LEN=1;MEANALT=1.66667;MQM=60;MQMR=60;NS=3;NUMALT=2;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=783;QR=2017;RO=52;RPL=0;RPP=46.4397;RPPR=115.927;RPR=20;RUN=1;SAF=20;SAP=46.4397;SAR=0;SRF=52;SRP=115.927;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|1:55:41,3,11:41:1588:3,11:114,430:-23.0099,-26.0057,-155.547,0,-121.106,-127.143 0|1:5:1,0,4:1:38:0,4:0,154:-12.7263,-13.0273,-16.1428,0,-3.49624,-2.29212 0|1:18:10,3,5:10:391:3,5:118,199:-13.3766,-6.68197,-37.9216,0,-22.4384,-30.6404 dDocent_Contig_9434 22 . G T 337.651 . AB=0.280702;ABP=26.8203;AC=3;AF=0.5;AN=6;AO=16;CIGAR=1X;DP=57;DPB=57;DPRA=0;EPP=37.7539;EPPR=92.0407;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=615;QR=1567;RO=41;RPL=0;RPP=37.7539;RPPR=92.0407;RPR=16;RUN=1;SAF=16;SAP=37.7539;SAR=0;SRF=41;SRP=92.0407;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:30:22,8:22:848:8:310:-19.229,0,-67.5956 0/1:8:4,4:4:150:4:156:-12.0076,0,-11.4556 0/1:19:15,4:15:569:4:149:-8.05136,0,-45.8228 dDocent_Contig_9435 107 . N C 190.597 . AB=0;ABP=0;AC=2;AF=1;AN=2;AO=6;CIGAR=1X;DP=6;DPB=6;DPRA=0;EPP=16.0391;EPPR=0;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=0;NS=1;NUMALT=1;ODDS=8.76405;PAIRED=1;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=208;QR=0;RO=0;RPL=0;RPP=16.0391;RPPR=0;RPR=6;RUN=1;SAF=0;SAP=16.0391;SAR=6;SRF=0;SRP=0;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 1/1:6:0,6:0:0:6:208:-19.0596,-1.80618,0 ./.:.:.:.:.:.:.:. ./.:.:.:.:.:.:.:. dDocent_Contig_9436 7 . T A 375.086 . AB=0.473684;ABP=3.12459;AC=1;AF=0.166667;AN=6;AO=9;CIGAR=1X3M1X;DP=166;DPB=166;DPRA=0.431818;EPP=22.5536;EPPR=289.645;GTI=0;LEN=1;MEANALT=3;MQM=60;MQMR=60;NS=3;NUMALT=3;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=349;QR=5092;RO=132;RPL=0;RPP=22.5536;RPPR=289.645;RPR=9;RUN=1;SAF=9;SAP=22.5536;SAR=0;SRF=132;SRP=289.645;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|0:103:85,0,0,12:85:3276:0,0,12:0,0,479:-13.8713,-39.4588,-308.463,-39.4588,-308.463,-308.463,0,-269.014,-269.014,-265.402 0|1:19:5,9,4,0:5:195:9,4,0:349,161,0:-27.16,0,-13.3142,-15.3925,-2.75041,-30.2181,-28.6651,-16.0235,-31.4223,-44.6938 0|0:44:42,0,0,0:42:1621:0,0,0:0,0,0:0,-12.6433,-145.765,-12.6433,-145.765,-145.765,-12.6433,-145.765,-145.765,-145.765 dDocent_Contig_9437 83 . T C 359.228 . AB=0.395349;ABP=7.10075;AC=3;AF=0.5;AN=6;AO=17;CIGAR=1X;DP=43;DPB=43;DPRA=0;EPP=39.9253;EPPR=59.4686;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=593;QR=962;RO=26;RPL=17;RPP=39.9253;RPPR=59.4686;RPR=0;RUN=1;SAF=17;SAP=39.9253;SAR=0;SRF=26;SRP=59.4686;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:11:2,9:2:65:9:328:-26.557,0,-2.86212 0/1:22:18,4:18:677:4:133:-5.6751,0,-54.6384 0/1:10:6,4:6:220:4:132:-9.19403,0,-17.1452 dDocent_Contig_9438 11 . G C 146.053 . AB=0.163636;ABP=57.0602;AC=2;AF=0.5;AN=4;AO=9;CIGAR=1X2M4I4M;DP=55;DPB=60.7143;DPRA=0;EPP=22.5536;EPPR=100.727;GTI=0;LEN=1;MEANALT=1.5;MQM=60;MQMR=60;NS=2;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=358;QR=1739;RO=45;RPL=0;RPP=22.5536;RPPR=100.727;RPR=9;RUN=1;SAF=9;SAP=22.5536;SAR=0;SRF=45;SRP=100.727;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|1:43:34,8:34:1321:8:319:-16.3001,0,-106.418 .:.:.:.:.:.:.:. 0|1:12:11,1:11:418:1:39:-0.284205,0,-34.3593 dDocent_Contig_9439 11 . G C 1189.65 . AB=0.366667;ABP=16.9077;AC=3;AF=0.5;AN=6;AO=33;CIGAR=1X6M;DP=90;DPB=90;DPRA=0;EPP=74.6689;EPPR=72.4974;GTI=0;LEN=1;MEANALT=2.66667;MQM=60;MQMR=60;NS=3;NUMALT=4;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=1319;QR=1258;RO=32;RPL=0;RPP=74.6689;RPPR=72.4974;RPR=33;RUN=1;SAF=33;SAP=74.6689;SAR=0;SRF=32;SRP=72.4974;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 1|0:35:4,0,4,15,12:4:159:0,4,15,12:0,148,602,469:-73.8733,-75.0774,-88.169,-62.9735,-76.0648,-74.8606,-25.4681,-38.5616,-26.4587,-34.0462,-36.5215,-49.6131,-37.5111,0,-46.0008 0|1:19:6,4,1,8,0:6:240:4,1,8,0:158,40,316,0:-24.1949,-13,-31.5679,-22.7056,-29.4768,-42.1765,0,-6.773,-16.4772,-17.3642,-26.0011,-32.7721,-42.4776,-19.7725,-45.7728 0|1:36:22,0,4,10,0:22:859:0,4,10,0:0,158,401,0:-26.4195,-33.0422,-103.652,-20.0426,-90.6508,-89.4467,0,-70.6115,-57.6096,-67.6012,-33.0422,-103.652,-90.6508,-70.6115,-103.652 dDocent_Contig_9440 41 . C T 168.863 . AB=0.35;ABP=6.91895;AC=2;AF=0.333333;AN=6;AO=7;CIGAR=1X;DP=37;DPB=37;DPRA=0.588235;EPP=18.2106;EPPR=68.1545;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=285;QR=1203;RO=30;RPL=0;RPP=18.2106;RPPR=68.1545;RPR=7;RUN=1;SAF=7;SAP=18.2106;SAR=0;SRF=30;SRP=68.1545;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:17:17,0:17:677:0:0:0,-5.11751,-61.2584 0/1:6:4,2:4:163:2:81:-5.87955,0,-13.2522 0/1:14:9,5:9:363:5:204:-14.5296,0,-28.8181 dDocent_Contig_9441 7 . T A 93.8233 . AB=0.571429;ABP=3.32051;AC=1;AF=0.166667;AN=6;AO=4;CIGAR=1X;DP=76;DPB=76;DPRA=0.202899;EPP=11.6962;EPPR=159.356;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=0;PAIREDR=0.680556;PAO=0;PQA=0;PQR=0;PRO=0;QA=144;QR=2759;RO=72;RPL=0;RPP=11.6962;RPPR=159.356;RPR=4;RUN=1;SAF=4;SAP=11.6962;SAR=0;SRF=72;SRP=159.356;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:57:57,0:57:2190:0:0:0,-17.1587,-197.324 0/1:7:3,4:3:117:4:144:-11.2062,0,-8.80317 0/0:12:12,0:12:452:0:0:0,-3.61236,-41.0266 dDocent_Contig_9442 20 . T C 356.68 . AB=0.242424;ABP=41.044;AC=2;AF=0.333333;AN=6;AO=16;CIGAR=1X;DP=76;DPB=76;DPRA=3.3;EPP=37.7539;EPPR=133.299;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=648;QR=2378;RO=60;RPL=0;RPP=37.7539;RPPR=133.299;RPR=16;RUN=1;SAF=16;SAP=37.7539;SAR=0;SRF=60;SRP=133.299;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:45:38,7:38:1503:7:285:-12.4781,0,-121.961 0/0:10:10,0:10:394:0:0:0,-3.0103,-35.8127 0/1:21:12,9:12:481:9:363:-26.7128,0,-37.3154 dDocent_Contig_9444 29 . T G 204.624 . AB=0.157895;ABP=99.5837;AC=3;AF=0.5;AN=6;AO=15;CIGAR=1X;DP=95;DPB=95;DPRA=0;EPP=35.5824;EPPR=176.728;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=6.93889e-18;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=576;QR=2956;RO=80;RPL=0;RPP=35.5824;RPPR=176.728;RPR=15;RUN=1;SAF=15;SAP=35.5824;SAR=0;SRF=80;SRP=176.728;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:58:53,5:53:1989:5:194:-0.369682,0,-161.786 0/1:7:4,3:4:143:3:119:-8.9878,0,-11.1133 0/1:30:23,7:23:824:7:263:-14.9941,0,-65.4367 dDocent_Contig_9445 61 . A G 435.357 . AB=0.34;ABP=14.1282;AC=2;AF=0.333333;AN=6;AO=17;CIGAR=1X;DP=52;DPB=52;DPRA=12.5;EPP=39.9253;EPPR=79.0118;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=682;QR=1400;RO=35;RPL=17;RPP=39.9253;RPPR=79.0118;RPR=0;RUN=1;SAF=17;SAP=39.9253;SAR=0;SRF=35;SRP=79.0118;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:38:25,13:25:997:13:522:-35.8871,0,-78.5898 0/0:2:2,0:2:82:0:0:0,-0.60206,-7.77968 0/1:12:8,4:8:321:4:160:-11.1711,0,-25.6458 dDocent_Contig_9446 43 . G A 48.5705 . AB=0.2;ABP=14.7363;AC=1;AF=0.25;AN=4;AO=3;CIGAR=1X;DP=39;DPB=39;DPRA=0.625;EPP=9.52472;EPPR=81.1833;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=2;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=122;QR=1410;RO=36;RPL=0;RPP=9.52472;RPPR=81.1833;RPR=3;RUN=1;SAF=3;SAP=9.52472;SAR=0;SRF=36;SRP=81.1833;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:24:24,0:24:935:0:0:0,-7.22472,-84.4425 ./.:.:.:.:.:.:.:. 0/1:15:12,3:12:475:3:122:-6.85704,0,-38.5833 dDocent_Contig_9447 11 . C T 1119.23 . AB=0.114504;ABP=172.103;AC=0;AF=0;AN=6;AO=15;CIGAR=1X2M2X;DP=131;DPB=131;DPRA=0;EPP=35.5824;EPPR=96.3836;GTI=0;LEN=1;MEANALT=4;MQM=60;MQMR=60;NS=3;NUMALT=3;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=573;QR=1682;RO=43;RPL=0;RPP=35.5824;RPPR=96.3836;RPR=15;RUN=1;SAF=15;SAP=35.5824;SAR=0;SRF=43;SRP=96.3836;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|0:70:24,8,15,18:24:939:8,15,18:310,602,691:-48.9207,-30.6797,-105.478,-6.53654,-58.2798,-79.2306,0,-51.7392,-27.5979,-71.7858 0|0:12:3,1,3,5:3:112:1,3,5:32,120,197:-15.7762,-14.1089,-22.9718,-6.78627,-13.3829,-15.0512,-0.735985,-7.33343,0,-8.39715 0|0:49:16,6,7,18:16:631:6,7,18:231,277,702:-52.7228,-38.5746,-88.6874,-34.741,-67.6965,-84.5539,0,-32.9567,-29.123,-46.5021 dDocent_Contig_9448 17 . A G 42.3042 . AB=0.133333;ABP=38.0434;AC=1;AF=0.166667;AN=6;AO=4;CIGAR=1X;DP=38;DPB=38;DPRA=7.5;EPP=11.6962;EPPR=76.8404;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=1.73472e-18;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=160;QR=1345;RO=34;RPL=0;RPP=11.6962;RPPR=76.8404;RPR=4;RUN=1;SAF=4;SAP=11.6962;SAR=0;SRF=34;SRP=76.8404;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:30:26,4:26:1034:4:160:-5.75253,0,-84.3243 0/0:1:1,0:1:40:0:0:0,-0.30103,-3.99568 0/0:7:7,0:7:271:0:0:0,-2.10721,-24.7524 dDocent_Contig_9449 10 . A G 181.687 . AB=0.132743;ABP=135.393;AC=1;AF=0.166667;AN=6;AO=20;CIGAR=1X;DP=185;DPB=185;DPRA=14.9167;EPP=46.4397;EPPR=361.303;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=796;QR=6570;RO=165;RPL=0;RPP=46.4397;RPPR=361.303;RPR=20;RUN=1;SAF=20;SAP=46.4397;SAR=0;SRF=165;SRP=361.303;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:113:98,15:98:3889:15:593:-19.6915,0,-315.985 0/0:6:6,0:6:242:0:0:0,-1.80618,-22.1564 0/0:66:61,5:61:2439:5:203:0,-1.21492,-201.003 dDocent_Contig_9450 11 . C A 170.246 . AB=0.113208;ABP=209.628;AC=2;AF=0.333333;AN=6;AO=18;CIGAR=1X1M2X1M;DP=170;DPB=168;DPRA=7.22727;EPP=42.0968;EPPR=304.845;GTI=0;LEN=1;MEANALT=3;MQM=59.6111;MQMR=59.7626;NS=3;NUMALT=2;ODDS=0;PAIRED=0;PAIREDR=0.151079;PAO=0;PQA=0;PQR=0;PRO=0;QA=721;QR=5543;RO=139;RPL=0;RPP=42.0968;RPPR=304.845;RPR=18;RUN=1;SAF=18;SAP=42.0968;SAR=0;SRF=139;SRP=304.845;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|1:97:78,12,6:78:3113:12,6:479,236:-15.9731,0,-252.633,-20.0435,-236.834,-274.478 0|0:11:10,0,0:10:399:0,0:0,0:0,-3.0103,-35.8591,-3.0103,-35.8591,-35.8591 0|1:62:51,6,4:51:2031:6,4:242,163:-4.57402,0,-165.422,-6.47796,-153.78,-172.506 dDocent_Contig_9451 15 . A G 143.192 . AB=0.315789;ABP=8.61041;AC=2;AF=0.333333;AN=6;AO=6;CIGAR=1X;DP=27;DPB=27;DPRA=1.1875;EPP=16.0391;EPPR=48.6112;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=1.73472e-18;PAIRED=0.833333;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=243;QR=838;RO=21;RPL=0;RPP=16.0391;RPPR=48.6112;RPR=6;RUN=1;SAF=6;SAP=16.0391;SAR=0;SRF=21;SRP=48.6112;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:10:5,5:5:197:5:205:-15.8247,0,-15.0946 0/1:9:8,1:8:323:1:38:-1.088,0,-26.7297 0/0:8:8,0:8:318:0:0:0,-2.40824,-28.9863 dDocent_Contig_9453 10 . A G 51.2449 . AB=0.1875;ABP=30.1537;AC=1;AF=0.166667;AN=6;AO=6;CIGAR=1X;DP=92;DPB=92;DPRA=1.06667;EPP=16.0391;EPPR=189.757;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=0.988372;PAO=0;PQA=0;PQR=0;PRO=0;QA=181;QR=3446;RO=86;RPL=0;RPP=16.0391;RPPR=189.757;RPR=6;RUN=1;SAF=6;SAP=16.0391;SAR=0;SRF=86;SRP=189.757;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:47:47,0:47:1871:0:0:0,-14.1484,-168.599 0/0:13:13,0:13:524:0:0:0,-3.91339,-47.5068 0/1:32:26,6:26:1051:6:181:-6.9484,0,-85.2464 dDocent_Contig_9454 7 . T C 5935.89 . AB=0.821429;ABP=103.518;AC=5;AF=0.833333;AN=6;AO=187;CIGAR=1X;DP=212;DPB=212;DPRA=0;EPP=409.076;EPPR=55.1256;GTI=0;LEN=1;MEANALT=1.33333;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=7149;QR=887;RO=24;RPL=0;RPP=409.076;RPPR=55.1256;RPR=187;RUN=1;SAF=187;SAP=409.076;SAR=0;SRF=24;SRP=55.1256;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:112:19,92:19:720:92:3527:-283.98,0,-31.5442 1/1:45:0,45:0:0:45:1717:-154.789,-13.5464,0 1/1:55:5,50:5:167:50:1905:-156.343,-1.2053,0 dDocent_Contig_9455 43 . A G 98.5781 . AB=0.134328;ABP=80.8268;AC=2;AF=0.333333;AN=6;AO=9;CIGAR=1X;DP=70;DPB=70;DPRA=11.1667;EPP=22.5536;EPPR=133.299;GTI=0;LEN=1;MEANALT=1.5;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=0;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=349;QR=2371;RO=60;RPL=0;RPP=22.5536;RPPR=133.299;RPR=9;RUN=1;SAF=9;SAP=22.5536;SAR=0;SRF=60;SRP=133.299;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:48:40,7:40:1583:7:284:-11.3765,0,-128.155 0/0:3:3,0:3:123:0:0:0,-0.90309,-11.4648 0/1:19:17,2:17:665:2:65:-0.450166,0,-54.4547 dDocent_Contig_9456 93 . G A 49.6214 . AB=0.3;ABP=6.48466;AC=1;AF=0.166667;AN=6;AO=5;CIGAR=1X;DP=70;DPB=70;DPRA=11.1667;EPP=13.8677;EPPR=144.156;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=1.73472e-18;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=174;QR=2256;RO=65;RPL=5;RPP=13.8677;RPPR=144.156;RPR=0;RUN=1;SAF=5;SAP=13.8677;SAR=0;SRF=65;SRP=144.156;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:57:55,2:55:1907:2:69:0,-10.606,-165.359 0/0:3:3,0:3:105:0:0:0,-0.90309,-9.79616 0/1:10:7,3:7:244:3:105:-6.78586,0,-19.2898 dDocent_Contig_9457 50 . C A 797.909 . AB=0.408451;ABP=8.17902;AC=3;AF=0.5;AN=6;AO=29;CIGAR=1X;DP=71;DPB=71;DPRA=0;EPP=65.983;EPPR=94.2121;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=1163;QR=1691;RO=42;RPL=29;RPP=65.983;RPPR=94.2121;RPR=0;RUN=1;SAF=29;SAP=65.983;SAR=0;SRF=42;SRP=94.2121;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:49:31,18:31:1247:18:719:-50.2855,0,-97.7476 0/1:10:1,9:1:41:9:364:-30.1145,0,-1.08427 0/1:12:10,2:10:403:2:80:-3.97943,0,-33.0166 dDocent_Contig_9458 123 . C T 52.6276 . AB=0.166667;ABP=31.9633;AC=1;AF=0.166667;AN=6;AO=5;CIGAR=1X;DP=56;DPB=56;DPRA=2.30769;EPP=13.8677;EPPR=105.24;GTI=0;LEN=1;MEANALT=1;MQM=58.8;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=0;PAIREDR=0.764706;PAO=0;PQA=0;PQR=0;PRO=0;QA=172;QR=1704;RO=51;RPL=0;RPP=13.8677;RPPR=113.755;RPR=5;RUN=1;SAF=0;SAP=13.8677;SAR=5;SRF=1;SRP=105.24;SRR=50;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:30:25,5:25:824:5:172:-6.78554,0,-65.432 0/0:4:4,0:4:138:0:0:0,-1.20412,-12.7604 0/0:22:22,0:22:742:0:0:0,-6.62266,-67.0921 dDocent_Contig_9460 125 . C A 407.859 . AB=0.410256;ABP=5.73856;AC=3;AF=0.5;AN=6;AO=19;CIGAR=1X;DP=65;DPB=65;DPRA=0;EPP=44.2683;EPPR=102.898;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=662;QR=1602;RO=46;RPL=0;RPP=44.2683;RPPR=102.898;RPR=19;RUN=1;SAF=0;SAP=44.2683;SAR=19;SRF=0;SRP=102.898;SRR=46;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:39:23,16:23:805:16:558:-38.8092,0,-61.031 1/1:1:0,1:0:0:1:35:-3.49863,-0.30103,0 0/0:25:23,2:23:797:2:69:0,-0.973086,-65.4972 dDocent_Contig_9463 158 . A G 92.1284 . AB=0.15625;ABP=68.6973;AC=2;AF=0.333333;AN=6;AO=10;CIGAR=1X;DP=68;DPB=68;DPRA=8;EPP=24.725;EPPR=128.956;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=3.46945e-18;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=348;QR=2185;RO=58;RPL=10;RPP=24.725;RPPR=128.956;RPR=0;RUN=1;SAF=0;SAP=24.725;SAR=10;SRF=0;SRP=128.956;SRR=58;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:55:48,7:48:1803:7:237:-5.09185,0,-145.968 0/0:4:4,0:4:148:0:0:0,-1.20412,-13.6808 0/1:9:6,3:6:234:3:111:-7.64365,0,-18.7214 dDocent_Contig_9464 64 . G C 3767.89 . AB=0.75;ABP=24.725;AC=5;AF=0.833333;AN=6;AO=114;CIGAR=1X1M;DP=130;DPB=130;DPRA=0;EPP=250.558;EPPR=31.2394;GTI=0;LEN=1;MEANALT=1.66667;MQM=60;MQMR=60;NS=3;NUMALT=2;ODDS=0;PAIRED=0.991228;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=4522;QR=471;RO=13;RPL=114;RPP=250.558;RPPR=31.2394;RPR=0;RUN=1;SAF=114;SAP=250.558;SAR=0;SRF=13;SRP=31.2394;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 1|1:80:5,1,74:5:191:1,74:40,2918:-245.165,-243.375,-258.744,-6.62073,-18.9782,0 1|1:10:0,0,10:0:0:0,10:0,400:-36.3589,-36.3589,-36.3589,-3.0103,-3.0103,0 0|1:40:8,2,30:8:280:2,30:82,1204:-96.7877,-92.4272,-114.588,0,-15.946,-13.6952 dDocent_Contig_9465 159 . G A 135.355 . AB=0.25;ABP=22.5536;AC=2;AF=0.333333;AN=6;AO=9;CIGAR=1X;DP=44;DPB=44;DPRA=2.25;EPP=22.5536;EPPR=79.0118;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=302;QR=1181;RO=35;RPL=9;RPP=22.5536;RPPR=79.0118;RPR=0;RUN=1;SAF=0;SAP=22.5536;SAR=9;SRF=0;SRP=79.0118;SRR=35;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:25:22,3:22:756:3:99:-1.71155,0,-60.8331 0/1:11:5,6:5:145:6:203:-15.2907,0,-10.0241 0/0:8:8,0:8:280:0:0:0,-2.40824,-25.54 dDocent_Contig_9466 163 . A C 55.8312 . AB=0.190476;ABP=20.4855;AC=2;AF=0.5;AN=4;AO=4;CIGAR=1X;DP=21;DPB=21;DPRA=0;EPP=11.6962;EPPR=39.9253;GTI=0;LEN=1;MEANALT=1;MQM=52.5;MQMR=60;NS=2;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=161;QR=650;RO=17;RPL=4;RPP=11.6962;RPPR=39.9253;RPR=0;RUN=1;SAF=0;SAP=11.6962;SAR=4;SRF=0;SRP=39.9253;SRR=17;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:13:10,3:10:369:3:120:-7.2743,0,-29.6266 0/1:8:7,1:7:281:1:41:-0.558596,0,-23.2537 ./.:.:.:.:.:.:.:. dDocent_Contig_9467 54 . A G 214.287 . AB=0.128;ABP=153.259;AC=2;AF=0.333333;AN=6;AO=16;CIGAR=1M1X2M;DP=125;DPB=128.5;DPRA=0;EPP=37.7539;EPPR=222.329;GTI=0;LEN=1;MEANALT=2;MQM=60;MQMR=59.4653;NS=3;NUMALT=2;ODDS=0;PAIRED=1;PAIREDR=0.851485;PAO=0;PQA=0;PQR=0;PRO=0;QA=643;QR=3914;RO=101;RPL=16;RPP=37.7539;RPPR=222.329;RPR=0;RUN=1;SAF=16;SAP=37.7539;SAR=0;SRF=101;SRP=222.329;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|1:77:60,5,12:60:2317:5,12:204,483:-21.7413,-22.9701,-211.733,0,-173.428,-186.649 0|0:15:11,2,1:11:417:2,1:78,39:-3.17017,0,-33.6923,-3.25232,-31.086,-37.2013 0|1:33:30,0,3:30:1180:0,3:0,121:-1.34621,-10.3771,-105.958,0,-95.9828,-95.0797 dDocent_Contig_9468 15 . G A 570.949 . AB=0.349206;ABP=15.4532;AC=3;AF=0.5;AN=6;AO=22;CIGAR=1X;DP=63;DPB=63;DPRA=0;EPP=50.7827;EPPR=92.0407;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=0.804878;PAO=0;PQA=0;PQR=0;PRO=0;QA=894;QR=1635;RO=41;RPL=0;RPP=50.7827;RPPR=92.0407;RPR=22;RUN=1;SAF=22;SAP=50.7827;SAR=0;SRF=41;SRP=92.0407;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:44:33,11:33:1324:11:449:-27.5206,0,-106.177 0/1:2:1,1:1:40:1:40:-3.39362,0,-3.39362 0/1:17:7,10:7:271:10:405:-31.692,0,-19.6346 dDocent_Contig_9469 8 . A G 263.417 . AB=0.214286;ABP=52.644;AC=2;AF=0.333333;AN=6;AO=15;CIGAR=1X;DP=100;DPB=100;DPRA=1.16667;EPP=35.5824;EPPR=187.585;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=558;QR=3243;RO=85;RPL=0;RPP=35.5824;RPPR=187.585;RPR=15;RUN=1;SAF=15;SAP=35.5824;SAR=0;SRF=85;SRP=187.585;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:30:30,0:30:1160:0:0:0,-9.0309,-104.698 0/1:29:25,4:25:939:4:155:-5.59557,0,-76.0922 0/1:41:30,11:30:1144:11:403:-24.269,0,-90.9179 dDocent_Contig_9470 26 . T G 761.739 . AB=0.453125;ABP=4.23175;AC=3;AF=0.5;AN=6;AO=29;CIGAR=1X;DP=64;DPB=64;DPRA=0;EPP=65.983;EPPR=79.0118;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=1110;QR=1373;RO=35;RPL=0;RPP=65.983;RPPR=79.0118;RPR=29;RUN=1;SAF=29;SAP=65.983;SAR=0;SRF=35;SRP=79.0118;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:34:19,15:19:753:15:576:-41.9424,0,-57.8606 0/1:7:4,3:4:149:3:115:-8.61727,0,-11.6655 0/1:23:12,11:12:471:11:419:-31.1371,0,-35.8154 dDocent_Contig_9471 11 . A T 321.366 . AB=0.333333;ABP=9.52472;AC=4;AF=0.666667;AN=6;AO=12;CIGAR=1X2M1X;DP=30;DPB=30;DPRA=0;EPP=29.068;EPPR=42.0968;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=474;QR=716;RO=18;RPL=0;RPP=29.068;RPPR=42.0968;RPR=12;RUN=1;SAF=12;SAP=29.068;SAR=0;SRF=18;SRP=42.0968;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|1:14:8,6:8:315:6:243:-18.0338,0,-24.501 1|1:3:0,3:0:0:3:111:-10.3512,-0.90309,0 0|1:13:10,3:10:401:3:120:-7.2743,0,-32.5369 dDocent_Contig_9472 12 . T A 61.0676 . AB=0.333333;ABP=4.45795;AC=1;AF=0.166667;AN=6;AO=3;CIGAR=2X1M;DP=22;DPB=22;DPRA=1.07143;EPP=3.73412;EPPR=27.4756;GTI=0;LEN=1;MEANALT=2;MQM=10.3333;MQMR=60;NS=3;NUMALT=3;ODDS=0;PAIRED=0;PAIREDR=0.866667;PAO=0;PQA=0;PQR=0;PRO=0;QA=31;QR=595;RO=15;RPL=0;RPP=9.52472;RPPR=35.5824;RPR=3;RUN=1;SAF=2;SAP=3.73412;SAR=1;SRF=14;SRP=27.4756;SRR=1;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|0:9:8,0,1,0:8:315:0,1,0:0,10,0:0,-2.40824,-28.6057,-1.98802,-28.2933,-27.9923,-2.40824,-28.6057,-28.2933,-28.6057 0|0:7:7,0,0,0:7:280:0,0,0:0,0,0:0,-2.10721,-25.5719,-2.10721,-25.5719,-25.5719,-2.10721,-25.5719,-25.5719,-25.5719 1|0:6:0,2,2,2:0:0:2,2,2:77,21,70:-6.61976,-5.36489,-4.76283,-5.88375,-4.70678,-5.28169,-1.30084,0,-0.532884,-0.698776 dDocent_Contig_9473 15 . A T 160.282 . AB=0.428571;ABP=3.63072;AC=1;AF=0.166667;AN=6;AO=6;CIGAR=1X;DP=33;DPB=33;DPRA=1.47368;EPP=16.0391;EPPR=61.6401;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=58.8889;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=0.962963;PAO=0;PQA=0;PQR=0;PRO=0;QA=241;QR=1059;RO=27;RPL=0;RPP=16.0391;RPPR=61.6401;RPR=6;RUN=1;SAF=6;SAP=16.0391;SAR=0;SRF=27;SRP=61.6401;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:18:18,0:18:697:0:0:0,-5.41854,-62.2772 0/0:1:1,0:1:40:0:0:0,-0.30103,-3.99568 0/1:14:8,6:8:322:6:241:-17.8514,0,-25.1345 dDocent_Contig_9474 8 . A T 57.5158 . AB=0.181818;ABP=32.0291;AC=1;AF=0.166667;AN=6;AO=6;CIGAR=1X;DP=185;DPB=185;DPRA=0.434211;EPP=16.0391;EPPR=391.704;GTI=0;LEN=1;MEANALT=1;MQM=33;MQMR=56.7989;NS=3;NUMALT=1;ODDS=0;PAIRED=0;PAIREDR=0.50838;PAO=0;PQA=0;PQR=0;PRO=0;QA=230;QR=6778;RO=179;RPL=0;RPP=16.0391;RPPR=391.704;RPR=6;RUN=1;SAF=6;SAP=16.0391;SAR=0;SRF=179;SRP=391.704;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:108:108,0:108:4085:0:0:0,-32.5112,-361.194 0/1:33:27,6:27:1023:6:230:-7.57549,0,-80.4938 0/0:44:44,0:44:1670:0:0:0,-13.2453,-148.308 dDocent_Contig_9475 20 . A G 1587.78 . AB=0.14876;ABP=132.671;AC=0;AF=0;AN=6;AO=18;CIGAR=3M1X1M1X8M;DP=132;DPB=122.786;DPRA=0;EPP=42.0968;EPPR=59.4686;GTI=0;LEN=1;MEANALT=5.5;MQM=60;MQMR=60;NS=3;NUMALT=6;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=728;QR=1024;RO=26;RPL=0;RPP=42.0968;RPPR=59.4686;RPR=18;RUN=1;SAF=18;SAP=42.0968;SAR=0;SRF=26;SRP=59.4686;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|0:90:20,0,17,31,0,13,6:20:784:0,17,31,0,13,6:0,687,1180,0,506,222:-90.7581,-96.7787,-161.249,-40.1348,-104.607,-99.4894,0,-64.469,-7.82583,-55.1371,-96.7787,-161.249,-104.607,-64.469,-161.249,-55.1942,-119.665,-63.0218,-22.8859,-119.665,-115.751,-78.63,-143.1,-86.4579,-46.3212,-143.1,-101.516,-141.294 0|0:11:0,0,0,9,0,2,0:0:0:0,0,9,0,2,0:0,0,333,0,78,0:-34.0255,-34.0255,-34.0255,-34.0255,-34.0255,-34.0255,-6.80141,-6.80141,-6.80141,-4.09214,-34.0255,-34.0255,-34.0255,-6.80141,-34.0255,-27.6102,-27.6102,-27.6102,0,-27.6102,-27.0081,-34.0255,-34.0255,-34.0255,-6.80141,-34.0255,-27.6102,-34.0255 0|0:31:6,2,1,13,5,4,0:6:240:2,1,13,5,4,0:82,41,503,188,143,0:-39.5161,-34.5518,-53.7243,-37.9371,-50.9413,-57.4102,0,-13.0065,-16.3922,-15.8643,-25.9212,-38.9253,-42.3103,-4.37855,-44.1901,-29.673,-42.6765,-46.0614,-8.13155,-34.0467,-48.2421,-41.3223,-54.3263,-57.7112,-19.7777,-45.6953,-49.4462,-61.0961 dDocent_Contig_9476 23 . G T 40.2621 . AB=0.172414;ABP=30.0414;AC=3;AF=0.5;AN=6;AO=5;CIGAR=1X;DP=29;DPB=29;DPRA=0;EPP=13.8677;EPPR=55.1256;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=188;QR=959;RO=24;RPL=0;RPP=13.8677;RPPR=55.1256;RPR=5;RUN=1;SAF=5;SAP=13.8677;SAR=0;SRF=24;SRP=55.1256;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:16:14,2:14:563:2:81:-2.86925,0,-46.1963 0/1:10:8,2:8:317:2:80:-4.58128,0,-25.8837 0/1:3:2,1:2:79:1:27:-1.79669,0,-6.59415 dDocent_Contig_9477 24 . A G 51.8034 . AB=0.1;ABP=169.779;AC=1;AF=0.166667;AN=6;AO=15;CIGAR=1X;DP=194;DPB=194;DPRA=15.6667;EPP=35.5824;EPPR=391.704;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=590;QR=7152;RO=179;RPL=0;RPP=35.5824;RPPR=391.704;RPR=15;RUN=1;SAF=15;SAP=35.5824;SAR=0;SRF=179;SRP=391.704;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:120:108,12:108:4341:12:472:-6.7032,0,-354.504 0/0:6:6,0:6:245:0:0:0,-1.80618,-22.4295 0/0:68:65,3:65:2566:3:118:0,-9.46846,-220.073 dDocent_Contig_9478 10 . A G 1727.3 . AB=0.283784;ABP=63.1073;AC=3;AF=0.5;AN=6;AO=42;CIGAR=3M1X;DP=148;DPB=148;DPRA=0;EPP=94.2121;EPPR=109.412;GTI=0;LEN=1;MEANALT=3.33333;MQM=60;MQMR=54.6939;NS=3;NUMALT=4;ODDS=0;PAIRED=0.97619;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=1675;QR=1873;RO=49;RPL=0;RPP=94.2121;RPPR=109.412;RPR=42;RUN=1;SAF=42;SAP=94.2121;SAR=0;SRF=49;SRP=109.412;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|1:74:22,15,5,3,29:22:850:15,5,3,29:574,193,84,1166:-89.4937,-49.2524,-113.946,-84.3866,-106.731,-152.087,-89.7237,-112.068,-147.198,-158.027,0,-22.3532,-57.4941,-62.8314,-60.494 0|1:29:12,2,0,7,8:12:447:2,0,7,8:78,0,247,306:-21.5051,-18.7448,-53.8662,-25.1174,-54.4682,-60.8399,-5.30239,-34.6448,-41.0163,-38.9091,0,-29.3556,-35.7285,-15.9055,-33.3202 0|1:45:15,23,0,2,5:15:576:23,0,2,5:879,0,76,203:-67.2544,0,-39.0279,-71.7699,-45.9516,-117.734,-65.5715,-39.7531,-111.535,-110.933,-55.0232,-29.2021,-100.989,-94.7898,-99.4835 dDocent_Contig_9479 28 . G A 30.6589 . AB=0.15;ABP=24.2907;AC=1;AF=0.166667;AN=6;AO=3;CIGAR=1X;DP=46;DPB=46;DPRA=1.53846;EPP=9.52472;EPPR=96.3836;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=117;QR=1714;RO=43;RPL=0;RPP=9.52472;RPPR=96.3836;RPR=3;RUN=1;SAF=3;SAP=9.52472;SAR=0;SRF=43;SRP=96.3836;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:25:25,0:25:1002:0:0:0,-7.52575,-90.4786 0/0:1:1,0:1:41:0:0:0,-0.30103,-4.09457 0/1:20:17,3:17:671:3:117:-4.88869,0,-54.7016 dDocent_Contig_9480 33 . A T 317.582 . AB=0.210526;ABP=58.3257;AC=2;AF=0.333333;AN=6;AO=16;CIGAR=1X;DP=82;DPB=82;DPRA=6.33333;EPP=37.7539;EPPR=146.327;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=638;QR=2639;RO=66;RPL=0;RPP=37.7539;RPPR=146.327;RPR=16;RUN=1;SAF=16;SAP=37.7539;SAR=0;SRF=66;SRP=146.327;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:56:43,13:43:1719:13:516:-29.9291,0,-138.077 0/0:6:6,0:6:239:0:0:0,-1.80618,-21.8839 0/1:20:17,3:17:681:3:122:-5.35189,0,-55.598 dDocent_Contig_9481 100 . N A 114.091 . AB=0;ABP=0;AC=4;AF=1;AN=4;AO=3;CIGAR=5X4I3X3I2M;DP=3;DPB=5.1;DPRA=0;EPP=9.52472;EPPR=0;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=0;NS=2;NUMALT=1;ODDS=0;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=115;QR=0;RO=0;RPL=0;RPP=9.52472;RPPR=0;RPR=3;RUN=1;SAF=3;SAP=9.52472;SAR=0;SRF=0;SRP=0;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL .:.:.:.:.:.:.:. 1|1:1:0,1:0:0:1:38:-3.79727,-0.30103,0 1|1:2:0,2:0:0:2:77:-7.30914,-0.60206,0 dDocent_Contig_9482 39 . T C 513.824 . AB=0.73913;ABP=14.4341;AC=2;AF=0.333333;AN=6;AO=17;CIGAR=1X;DP=32;DPB=32;DPRA=1.27778;EPP=39.9253;EPPR=35.5824;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=678;QR=596;RO=15;RPL=0;RPP=39.9253;RPPR=35.5824;RPR=17;RUN=1;SAF=17;SAP=39.9253;SAR=0;SRF=15;SRP=35.5824;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:6:1,5:1:40:5:195:-16.1164,0,-2.1895 0/1:17:5,12:5:195:12:483:-38.7041,0,-12.8037 0/0:9:9,0:9:361:0:0:0,-2.70927,-32.8539 dDocent_Contig_9485 8 . A C 2968.63 . AB=0.208163;ABP=546.738;AC=2;AF=0.333333;AN=6;AO=164;CIGAR=1X;DP=850;DPB=850;DPRA=0;EPP=333.551;EPPR=1146.98;GTI=0;LEN=1;MEANALT=2.33333;MQM=56.1159;MQMR=55.4902;NS=3;NUMALT=1;ODDS=0;PAIRED=0.957317;PAIREDR=0.708899;PAO=0;PQA=0;PQR=0;PRO=0;QA=6341;QR=25391;RO=663;RPL=0;RPP=359.132;RPPR=1442.7;RPR=164;RUN=1;SAF=161;SAP=333.551;SAR=3;SRF=627;SRP=1146.98;SRR=36;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:463:336,108:336:12883:108:4164:-236.763,0,-1006.64 0/0:115:101,11:101:3853:11:424:0,-1.36663,-247.005 0/1:272:226,45:226:8655:45:1753:-63.6229,0,-673.137 dDocent_Contig_9486 119 . T A 153.527 . AB=0.153846;ABP=16.5402;AC=2;AF=0.5;AN=4;AO=2;CIGAR=1X15M;DP=23;DPB=23.3125;DPRA=0;EPP=7.35324;EPPR=31.2394;GTI=0;LEN=1;MEANALT=2;MQM=60;MQMR=60;NS=2;NUMALT=3;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=65;QR=465;RO=13;RPL=0;RPP=7.35324;RPPR=31.2394;RPR=2;RUN=1;SAF=0;SAP=7.35324;SAR=2;SRF=0;SRP=31.2394;SRR=13;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|1:13:6,5,0,2:6:212:5,0,2:174,0,65:-12.3592,0,-15.7817,-14.1653,-17.2869,-31.4365,-8.92558,-12.0476,-26.1941,-25.5921 .:.:.:.:.:.:.:. 0|1:10:7,0,3,0:7:253:0,3,0:0,104,0:-6.69251,-8.79971,-29.4615,0,-21.0128,-20.1097,-8.79971,-29.4615,-21.0128,-29.4615 dDocent_Contig_9487 127 . G C 79.562 . 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AB=0.146341;ABP=47.552;AC=0;AF=0;AN=6;AO=6;CIGAR=2X2M1X;DP=75;DPB=75;DPRA=0;EPP=16.0391;EPPR=85.5263;GTI=0;LEN=1;MEANALT=4;MQM=60;MQMR=60;NS=3;NUMALT=4;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=243;QR=1489;RO=38;RPL=0;RPP=16.0391;RPPR=85.5263;RPR=6;RUN=1;SAF=6;SAP=16.0391;SAR=0;SRF=38;SRP=85.5263;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|0:41:25,1,6,0,8:25:987:1,6,0,8:41,243,0,318:-18.6512,-22.7924,-103.701,-6.13763,-83.9637,-85.542,-26.177,-104.003,-87.3482,-107.387,0,-77.8211,-61.1665,-81.2056,-78.7974 0|0:23:9,1,0,10,3:9:355:1,0,10,3:40,0,394,116:-29.7061,-29.1198,-58.0288,-32.4154,-58.3298,-61.6252,0,-25.9166,-29.2122,-26.2019,-22.8888,-48.8026,-52.0979,-19.6859,-51.1949 0|0:11:4,3,0,0,4:4:147:3,0,0,4:120,0,0,158:-11.7937,-3.11064,-14.2069,-12.9978,-15.11,-25.0001,-12.9978,-15.11,-25.0001,-25.0001,0,-2.0956,-11.9945,-11.9945,-10.7904 dDocent_Contig_9490 23 . T C 85.4251 . AB=0.45;ABP=3.87889;AC=1;AF=0.166667;AN=6;AO=21;CIGAR=1X2M1X3M1X;DP=52;DPB=52;DPRA=0;EPP=48.6112;EPPR=57.2971;GTI=0;LEN=1;MEANALT=2.33333;MQM=12;MQMR=60;NS=3;NUMALT=2;ODDS=0;PAIRED=0;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=823;QR=998;RO=25;RPL=0;RPP=48.6112;RPPR=57.2971;RPR=21;RUN=1;SAF=21;SAP=48.6112;SAR=0;SRF=25;SRP=57.2971;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|1:32:12,17,3:12:480:17,3:669,117:-9.82688,0,-34.431,-3.78203,-29.9333,-42.534 0|0:8:4,1,1:4:161:1,1:38,40:-2.14493,-2.88975,-15.9238,0,-12.922,-13.0931 0|0:12:9,3,0:9:357:3,0:116,0:0,-0.441584,-29.3218,-2.70927,-30.2249,-32.3086 dDocent_Contig_9491 11 . A G 1849.39 . 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T C 54.5161 . AB=0.15;ABP=45.5712;AC=2;AF=0.5;AN=4;AO=6;CIGAR=1X4M;DP=40;DPB=48.8;DPRA=0;EPP=16.0391;EPPR=68.1545;GTI=0;LEN=1;MEANALT=2;MQM=60;MQMR=60;NS=2;NUMALT=2;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=221;QR=1199;RO=30;RPL=0;RPP=16.0391;RPPR=68.1545;RPR=6;RUN=1;SAF=6;SAP=16.0391;SAR=0;SRF=30;SRP=68.1545;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|1:18:15,1,2:15:600:1,2:40,82:-2.2593,-3.48297,-52.5984,0,-46.1302,-48.8232 .:.:.:.:.:.:.:. 0|1:22:15,3,4:15:599:3,4:100,139:-6.78553,-3.21509,-51.6893,0,-41.3103,-48.1871 dDocent_Contig_9495 107 . N T 788.83 . AB=0;ABP=0;AC=6;AF=1;AN=6;AO=25;CIGAR=1X;DP=25;DPB=25;DPRA=0;EPP=57.2971;EPPR=0;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=0;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=860;QR=0;RO=0;RPL=0;RPP=57.2971;RPPR=0;RPR=25;RUN=1;SAF=0;SAP=57.2971;SAR=25;SRF=0;SRP=0;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 1/1:21:0,21:0:0:21:721:-65.2098,-6.32163,0 1/1:1:0,1:0:0:1:34:-3.39891,-0.30103,0 1/1:3:0,3:0:0:3:105:-9.79616,-0.90309,0 dDocent_Contig_9496 18 . A C 58.5243 . AB=0.25;ABP=9.52472;AC=1;AF=0.25;AN=4;AO=3;CIGAR=1X;DP=25;DPB=25;DPRA=0.923077;EPP=9.52472;EPPR=50.7827;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=2;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=123;QR=887;RO=22;RPL=0;RPP=9.52472;RPPR=50.7827;RPR=3;RUN=1;SAF=3;SAP=9.52472;SAR=0;SRF=22;SRP=50.7827;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:13:13,0:13:520:0:0:0,-3.91339,-47.1473 ./.:.:.:.:.:.:.:. 0/1:12:9,3:9:367:3:123:-7.85243,0,-29.7829 dDocent_Contig_9499 172 . C T 59.7424 . AB=0.133333;ABP=55.5599;AC=2;AF=0.333333;AN=6;AO=6;CIGAR=1X;DP=60;DPB=60;DPRA=1.5;EPP=16.0391;EPPR=120.27;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=244;QR=2118;RO=54;RPL=6;RPP=16.0391;RPPR=120.27;RPR=0;RUN=1;SAF=0;SAP=16.0391;SAR=6;SRF=0;SRP=120.27;SRR=54;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:33:30,3:30:1177:3:122:-1.4385,0,-96.2775 0/0:15:15,0:15:575:0:0:0,-4.51545,-52.0843 0/1:12:9,3:9:366:3:122:-7.76013,0,-29.6928 dDocent_Contig_9500 8 . T A 326.689 . AB=0.125;ABP=22.5536;AC=1;AF=0.166667;AN=6;AO=2;CIGAR=1M1D1X7M;DP=49;DPB=46.7;DPRA=0;EPP=7.35324;EPPR=57.2971;GTI=0;LEN=1;MEANALT=2;MQM=60;MQMR=60;NS=3;NUMALT=3;ODDS=0;PAIRED=0;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=76;QR=915;RO=25;RPL=0;RPP=7.35324;RPPR=57.2971;RPR=2;RUN=1;SAF=2;SAP=7.35324;SAR=0;SRF=25;SRP=57.2971;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|1:16:13,2,0,1:13:479:2,0,1:76,0,37:-2.34957,0,-38.5977,-6.26296,-39.1997,-45.4344,-3.5675,-36.4916,-42.7261,-42.425 0|0:22:8,0,12,1:8:289:0,12,1:0,364,41:-26.8278,-29.236,-52.8499,0,-23.728,-20.1157,-27.2113,-50.8257,-21.7087,-50.5246 0|0:11:4,0,4,2:4:147:0,4,2:0,129,79:-8.954,-10.1581,-22.1912,0,-12.0359,-10.8318,-4.13228,-16.1766,-6.02182,-15.5745 dDocent_Contig_9502 22 . C T 351.631 . AB=0.361111;ABP=9.04217;AC=3;AF=0.5;AN=6;AO=13;CIGAR=5M1X1M;DP=47;DPB=47.4286;DPRA=0;EPP=31.2394;EPPR=70.3259;GTI=0;LEN=1;MEANALT=1.5;MQM=60;MQMR=60;NS=3;NUMALT=2;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=526;QR=1232;RO=31;RPL=0;RPP=31.2394;RPPR=70.3259;RPR=13;RUN=1;SAF=13;SAP=31.2394;SAR=0;SRF=31;SRP=70.3259;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|1:15:12,1,2:12:475:1,2:27,80:-3.0642,-4.59098,-43.3812,0,-37.0915,-38.6085 0|1:11:9,2,0:9:357:2,0:71,0:-3.42975,0,-29.1822,-6.13902,-29.7842,-35.5609 0|1:21:10,0,11:10:400:0,11:0,446:-34.1746,-37.1848,-70.1331,0,-33.3504,-30.039 dDocent_Contig_9503 78 . T C 66.5052 . AB=0;ABP=0;AC=2;AF=0.333333;AN=6;AO=2;CIGAR=1X;DP=25;DPB=25;DPRA=0.173913;EPP=7.35324;EPPR=52.9542;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=0;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=65;QR=771;RO=23;RPL=2;RPP=7.35324;RPPR=52.9542;RPR=0;RUN=1;SAF=2;SAP=7.35324;SAR=0;SRF=23;SRP=52.9542;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 1/1:2:0,2:0:0:2:65:-6.17303,-0.60206,0 0/0:8:8,0:8:276:0:0:0,-2.40824,-25.1755 0/0:15:15,0:15:495:0:0:0,-4.51545,-44.8666 dDocent_Contig_9505 27 . A G 1949.45 . AB=0.0614035;ABP=193.49;AC=1;AF=0.166667;AN=6;AO=7;CIGAR=1X3M1X;DP=114;DPB=114.2;DPRA=0;EPP=18.2106;EPPR=81.1833;GTI=0;LEN=1;MEANALT=3.33333;MQM=60;MQMR=60;NS=3;NUMALT=4;ODDS=1.38778e-17;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=273;QR=1409;RO=36;RPL=0;RPP=18.2106;RPPR=81.1833;RPR=7;RUN=1;SAF=7;SAP=18.2106;SAR=0;SRF=36;SRP=81.1833;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|0:55:22,1,0,28,3:22:858:1,0,28,3:40,0,1094,120:-83.3008,-86.6281,-156.851,-89.9234,-157.153,-160.448,0,-67.2217,-70.5171,-62.0882,-80.0374,-147.267,-150.562,-60.6308,-149.659 1|0:21:4,5,2,10,0:4:155:5,2,10,0:193,78,399,0:-34.779,-20.1359,-31.3625,-29.6071,-26.4918,-41.7377,-3.11526,0,-9.47268,-12.8394,-35.9832,-32.8677,-42.3398,-15.8497,-48.7161 0|0:38:10,1,0,26,1:10:396:1,0,26,1:40,0,1037,40:-82.3881,-82.1033,-114.396,-85.3984,-114.697,-117.992,0,-29.2953,-32.5907,-24.7639,-82.1033,-111.401,-114.697,-29.2953,-114.396 dDocent_Contig_9506 50 . T A 187.235 . AB=0.857143;ABP=10.7656;AC=1;AF=0.166667;AN=6;AO=6;CIGAR=1X;DP=45;DPB=45;DPRA=0.368421;EPP=16.0391;EPPR=87.6977;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=0;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=246;QR=1555;RO=39;RPL=6;RPP=16.0391;RPPR=87.6977;RPR=0;RUN=1;SAF=6;SAP=16.0391;SAR=0;SRF=39;SRP=87.6977;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:16:16,0:16:640:0:0:0,-4.81648,-57.9344 0/0:22:22,0:22:874:0:0:0,-6.62266,-78.9697 0/1:7:1,6:1:41:6:246:-20.4129,0,-1.98736 dDocent_Contig_9507 105 . N T 169.376 . AB=0;ABP=0;AC=4;AF=1;AN=4;AO=5;CIGAR=3X;DP=5;DPB=5;DPRA=0;EPP=13.8677;EPPR=0;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=0;NS=2;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=177;QR=0;RO=0;RPL=0;RPP=13.8677;RPPR=0;RPR=5;RUN=1;SAF=0;SAP=13.8677;SAR=5;SRF=0;SRP=0;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 1|1:4:0,4:0:0:4:141:-13.037,-1.20412,0 1|1:1:0,1:0:0:1:36:-3.59827,-0.30103,0 .:.:.:.:.:.:.:. dDocent_Contig_9509 45 . T A 441.514 . AB=0.421053;ABP=5.06748;AC=2;AF=0.333333;AN=6;AO=17;CIGAR=1X;DP=57;DPB=57;DPRA=0;EPP=39.9253;EPPR=89.8692;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=3.46945e-18;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=689;QR=1611;RO=40;RPL=0;RPP=39.9253;RPPR=89.8692;RPR=17;RUN=1;SAF=17;SAP=39.9253;SAR=0;SRF=40;SRP=89.8692;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:35:21,14:21:853:14:567:-40.837,0,-66.5442 0/1:3:1,2:1:33:2:81:-6.78264,0,-2.39604 0/0:19:18,1:18:725:1:41:0,-1.625,-61.4788 dDocent_Contig_9510 7 . G C 819.195 . AB=0.135922;ABP=121.598;AC=1;AF=0.166667;AN=6;AO=14;CIGAR=1X3M1X;DP=123;DPB=123;DPRA=0;EPP=33.4109;EPPR=157.185;GTI=0;LEN=1;MEANALT=3.5;MQM=60;MQMR=60;NS=3;NUMALT=3;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=533;QR=2418;RO=71;RPL=0;RPP=33.4109;RPPR=157.185;RPR=14;RUN=1;SAF=14;SAP=33.4109;SAR=0;SRF=71;SRP=157.185;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|0:84:60,6,5,11:60:2025:6,5,11:234,186,400:-14.601,-13.4172,-175.695,-17.4384,-162.278,-180.012,0,-144.839,-148.855,-160.767 1|0:19:1,8,3,7:1:36:8,3,7:299,120,268:-43.226,-19.0518,-19.5784,-33.6384,-12.0962,-35.6716,-21.5351,0,-14.5789,-22.3636 0|0:20:10,0,0,10:10:357:0,0,10:0,0,392:-29.6153,-32.6256,-61.7067,-32.6256,-61.7067,-61.7067,0,-29.4553,-29.4553,-26.445 dDocent_Contig_9512 22 . T C 3004.02 . AB=0.603659;ABP=18.3165;AC=3;AF=0.5;AN=6;AO=99;CIGAR=1X;DP=164;DPB=164;DPRA=0;EPP=217.986;EPPR=144.156;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=0.989899;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=3939;QR=2301;RO=65;RPL=0;RPP=217.986;RPPR=144.156;RPR=99;RUN=1;SAF=99;SAP=217.986;SAR=0;SRF=65;SRP=144.156;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:60:32,28:32:1104:28:1109:-82.0286,0,-81.5937 0/1:52:12,40:12:451:40:1600:-128.581,0,-25.2799 0/1:52:21,31:21:746:31:1230:-95.3152,0,-51.7966 dDocent_Contig_9513 18 . C A 2171.92 . AB=0.811765;ABP=74.7711;AC=2;AF=0.333333;AN=6;AO=69;CIGAR=1X;DP=96;DPB=96;DPRA=3.86364;EPP=152.842;EPPR=61.6401;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=2731;QR=1093;RO=27;RPL=0;RPP=152.842;RPPR=61.6401;RPR=69;RUN=1;SAF=69;SAP=152.842;SAR=0;SRF=27;SRP=61.6401;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:78:13,65:13:527:65:2578:-208.682,0,-24.2959 0/1:7:3,4:3:122:4:153:-12.0323,0,-9.26528 0/0:11:11,0:11:444:0:0:0,-3.31133,-40.3158 dDocent_Contig_9514 107 . N T 286.052 . AB=0;ABP=0;AC=4;AF=1;AN=4;AO=9;CIGAR=1X;DP=9;DPB=9;DPRA=0;EPP=22.5536;EPPR=0;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=0;NS=2;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=307;QR=0;RO=0;RPL=0;RPP=22.5536;RPPR=0;RPR=9;RUN=1;SAF=0;SAP=22.5536;SAR=9;SRF=0;SRP=0;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL ./.:.:.:.:.:.:.:. 1/1:3:0,3:0:0:3:103:-9.61002,-0.90309,0 1/1:6:0,6:0:0:6:204:-18.6939,-1.80618,0 dDocent_Contig_9515 7 . G A 104.213 . AB=0.179487;ABP=37.8095;AC=2;AF=0.333333;AN=6;AO=7;CIGAR=1X2M1X3M1X;DP=47;DPB=47;DPRA=2.4375;EPP=18.2106;EPPR=87.6977;GTI=0;LEN=1;MEANALT=1.5;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=0.948718;PAO=0;PQA=0;PQR=0;PRO=0;QA=275;QR=1438;RO=39;RPL=0;RPP=18.2106;RPPR=87.6977;RPR=7;RUN=1;SAF=7;SAP=18.2106;SAR=0;SRF=39;SRP=87.6977;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|0:8:8,0:8:301:0:0:0,-2.40824,-27.4468 0|1:33:26,6:26:957:6:235:-11.6699,0,-76.6103 0|1:6:5,1:5:180:1:40:-2.1895,0,-14.7423 dDocent_Contig_9516 26 . G T 88.6534 . AB=0.25;ABP=13.8677;AC=2;AF=0.333333;AN=6;AO=5;CIGAR=1M1D1X;DP=33;DPB=31.3333;DPRA=0.769231;EPP=13.8677;EPPR=63.8115;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=196;QR=1073;RO=28;RPL=0;RPP=13.8677;RPPR=63.8115;RPR=5;RUN=1;SAF=5;SAP=13.8677;SAR=0;SRF=28;SRP=63.8115;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|0:13:13,0:13:507:0:0:0,-3.91339,-45.978 0|1:8:5,3:5:181:3:116:-8.40727,0,-14.233 0|1:12:10,2:10:385:2:80:-3.97943,0,-31.3936 dDocent_Contig_9517 22 . C T 506.503 . AB=0.410256;ABP=5.73856;AC=4;AF=0.666667;AN=6;AO=18;CIGAR=2X;DP=41;DPB=41;DPRA=0;EPP=42.0968;EPPR=50.7827;GTI=0;LEN=1;MEANALT=1.33333;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=0.944444;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=721;QR=876;RO=22;RPL=0;RPP=42.0968;RPPR=50.7827;RPR=18;RUN=1;SAF=18;SAP=42.0968;SAR=0;SRF=22;SRP=50.7827;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|1:30:16,13:16:649:13:523:-38.2881,0,-49.6131 0|1:9:6,3:6:227:3:118:-8.29293,0,-18.0802 1|1:2:0,2:0:0:2:80:-7.59179,-0.60206,0 dDocent_Contig_9518 73 . A T 411.663 . AB=0;ABP=0;AC=2;AF=0.333333;AN=6;AO=14;CIGAR=1X;DP=37;DPB=37;DPRA=1.21739;EPP=33.4109;EPPR=52.9542;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=1.69407e-21;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=452;QR=757;RO=23;RPL=14;RPP=33.4109;RPPR=52.9542;RPR=0;RUN=1;SAF=14;SAP=33.4109;SAR=0;SRF=23;SRP=52.9542;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:8:8,0:8:263:0:0:0,-2.40824,-23.9921 1/1:14:0,14:0:0:14:452:-40.9902,-4.21442,0 0/0:15:15,0:15:494:0:0:0,-4.51545,-44.7756 dDocent_Contig_9521 20 . C T 205.28 . AB=0.177778;ABP=43.5927;AC=1;AF=0.166667;AN=6;AO=9;CIGAR=1X1M1X;DP=186;DPB=185.667;DPRA=0;EPP=22.5536;EPPR=361.303;GTI=0;LEN=1;MEANALT=2;MQM=60;MQMR=60;NS=3;NUMALT=2;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=365;QR=6533;RO=165;RPL=0;RPP=22.5536;RPPR=361.303;RPR=9;RUN=1;SAF=9;SAP=22.5536;SAR=0;SRF=165;SRP=361.303;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|0:141:132,1,7:132:5239:1,7:41,287:0,-36.3512,-467.303,-16.0281,-443.915,-445.192 0|1:21:15,6,0:15:586:6,0:244,0:-16.0172,0,-46.7553,-20.5326,-48.5615,-68.6925 0|0:24:18,2,4:18:708:2,4:80,163:-8.03373,-6.86458,-64.4863,0,-51.6385,-57.0252 dDocent_Contig_9522 29 . G A 51.4289 . AB=0.131579;ABP=47.8112;AC=1;AF=0.166667;AN=6;AO=6;CIGAR=1X;DP=115;DPB=115;DPRA=1.62963;EPP=16.0391;EPPR=222.648;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=3.46945e-18;PAIRED=1;PAIREDR=0.963303;PAO=0;PQA=0;PQR=0;PRO=0;QA=235;QR=4274;RO=109;RPL=0;RPP=16.0391;RPPR=239.701;RPR=6;RUN=1;SAF=6;SAP=16.0391;SAR=0;SRF=107;SRP=222.648;SRR=2;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:38:33,5:33:1314:5:197:-6.66577,0,-107.088 0/0:50:49,1:49:1898:1:38:0,-11.2542,-167.234 0/0:27:27,0:27:1062:0:0:0,-8.12781,-95.867 dDocent_Contig_9523 22 . G A 307.782 . AB=0.166667;ABP=55.1256;AC=2;AF=0.333333;AN=6;AO=9;CIGAR=4M1X2M1X2M1X;DP=54;DPB=59.1818;DPRA=0;EPP=22.5536;EPPR=74.6689;GTI=0;LEN=1;MEANALT=1.66667;MQM=60;MQMR=60;NS=3;NUMALT=3;ODDS=6.93889e-18;PAIRED=0;PAIREDR=0.939394;PAO=0;PQA=0;PQR=0;PRO=0;QA=358;QR=1249;RO=33;RPL=0;RPP=22.5536;RPPR=74.6689;RPR=9;RUN=1;SAF=9;SAP=22.5536;SAR=0;SRF=33;SRP=74.6689;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|0:33:20,5,1,7:20:760:5,1,7:199,40,238:-13.2476,-2.86299,-63.7063,-15.9703,-61.9153,-78.0045,0,-45.9222,-59.0155,-60.204 0|1:7:5,0,2,0:5:187:0,2,0:0,77,0:-5.20099,-6.70614,-22.0124,0,-15.6878,-15.0858,-6.70614,-22.0124,-15.6878,-22.0124 0|1:14:8,0,6,0:8:302:0,6,0:0,241,0:-17.8523,-20.2605,-44.9947,0,-25.1251,-23.3189,-20.2605,-44.9947,-25.1251,-44.9947 dDocent_Contig_9524 37 . G A 214.369 . AB=0.285714;ABP=16.9698;AC=2;AF=0.333333;AN=6;AO=10;CIGAR=1X;DP=53;DPB=53;DPRA=0.972222;EPP=24.725;EPPR=96.3836;GTI=0;LEN=1;MEANALT=1;MQM=44.4;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=0;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=402;QR=1699;RO=43;RPL=0;RPP=24.725;RPPR=96.3836;RPR=10;RUN=1;SAF=10;SAP=24.725;SAR=0;SRF=43;SRP=96.3836;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:27:20,7:20:789:7:287:-17.022,0,-63.2008 0/0:18:18,0:18:708:0:0:0,-5.41854,-64.0443 0/1:8:5,3:5:202:3:115:-7.9377,0,-16.1538 dDocent_Contig_9525 31 . G A 1610.85 . AB=0.475;ABP=3.66174;AC=3;AF=0.5;AN=6;AO=57;CIGAR=1X;DP=120;DPB=120;DPRA=0;EPP=126.784;EPPR=139.813;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=2242;QR=2474;RO=63;RPL=0;RPP=126.784;RPPR=139.813;RPR=57;RUN=1;SAF=57;SAP=126.784;SAR=0;SRF=63;SRP=139.813;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:68:45,23:45:1791:23:872:-58.2999,0,-140.934 0/1:23:13,10:13:491:10:406:-29.9769,0,-37.6013 0/1:29:5,24:5:192:24:964:-78.331,0,-8.91701 dDocent_Contig_9526 12 . T C 44.1351 . AB=0.258065;ABP=18.771;AC=1;AF=0.166667;AN=6;AO=8;CIGAR=1X;DP=47;DPB=47;DPRA=3.875;EPP=20.3821;EPPR=87.6977;GTI=0;LEN=1;MEANALT=1;MQM=21;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=0;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=311;QR=1550;RO=39;RPL=0;RPP=20.3821;RPPR=87.6977;RPR=8;RUN=1;SAF=8;SAP=20.3821;SAR=0;SRF=39;SRP=87.6977;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:31:23,8:23:911:8:311:-5.93628,0,-72.9666 0/0:4:4,0:4:162:0:0:0,-1.20412,-14.967 0/0:12:12,0:12:477:0:0:0,-3.61236,-43.2806 dDocent_Contig_9527 7 . G A 904.421 . AB=0.571429;ABP=5.49198;AC=3;AF=0.5;AN=6;AO=32;CIGAR=1X;DP=56;DPB=56;DPRA=0;EPP=72.4974;EPPR=39.2015;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=0.875;PAO=0;PQA=0;PQR=0;PRO=0;QA=1236;QR=823;RO=24;RPL=0;RPP=72.4974;RPPR=55.1256;RPR=32;RUN=1;SAF=32;SAP=72.4974;SAR=0;SRF=22;SRP=39.2015;SRR=2;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:17:2,15:2:70:15:580:-47.4255,0,-1.52982 0/1:21:11,10:11:378:10:385:-28.685,0,-28.0259 0/1:18:11,7:11:375:7:271:-19.3378,0,-28.6509 dDocent_Contig_9528 79 . C T 202.361 . AB=0.357143;ABP=7.97367;AC=2;AF=0.333333;AN=6;AO=10;CIGAR=1X;DP=35;DPB=35;DPRA=2;EPP=24.725;EPPR=57.2971;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=350;QR=876;RO=25;RPL=10;RPP=24.725;RPPR=57.2971;RPR=0;RUN=1;SAF=10;SAP=24.725;SAR=0;SRF=25;SRP=57.2971;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:21:13,8:13:453:8:280:-19.2184,0,-34.7811 0/0:7:7,0:7:248:0:0:0,-2.10721,-22.6644 0/1:7:5,2:5:175:2:70:-4.54019,0,-13.9865 dDocent_Contig_9529 205 . C T 71.6299 . AB=0.4;ABP=3.87889;AC=2;AF=0.333333;AN=6;AO=4;CIGAR=1X;DP=19;DPB=19;DPRA=0.555556;EPP=11.6962;EPPR=35.5824;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=144;QR=543;RO=15;RPL=4;RPP=11.6962;RPPR=35.5824;RPR=0;RUN=1;SAF=0;SAP=11.6962;SAR=4;SRF=0;SRP=35.5824;SRR=15;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:3:1,2:1:37:2:72:-5.93355,0,-2.79474 0/0:9:9,0:9:329:0:0:0,-2.70927,-29.9592 0/1:7:5,2:5:177:2:72:-4.72943,0,-14.169 dDocent_Contig_9531 53 . T C 700.867 . AB=0.216561;ABP=112.566;AC=3;AF=0.5;AN=6;AO=34;CIGAR=1X;DP=157;DPB=157;DPRA=0;EPP=76.8404;EPPR=270.101;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=1343;QR=4552;RO=123;RPL=34;RPP=76.8404;RPPR=270.101;RPR=0;RUN=1;SAF=34;SAP=76.8404;SAR=0;SRF=123;SRP=270.101;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:97:86,11:86:3193:11:441:-10.8449,0,-258.319 0/1:10:9,1:9:319:1:41:-1.08427,0,-26.0344 0/1:50:28,22:28:1040:22:861:-62.7475,0,-78.8431 dDocent_Contig_9532 12 . A C 32.5127 . AB=0.137931;ABP=36.0317;AC=2;AF=0.333333;AN=6;AO=4;CIGAR=1X;DP=67;DPB=67;DPRA=0.381579;EPP=11.6962;EPPR=139.813;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=163;QR=2439;RO=63;RPL=0;RPP=11.6962;RPPR=139.813;RPR=4;RUN=1;SAF=4;SAP=11.6962;SAR=0;SRF=63;SRP=139.813;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:38:38,0:38:1476:0:0:0,-11.4391,-133.095 0/1:12:10,2:10:381:2:82:-4.16732,0,-31.0316 0/1:17:15,2:15:582:2:81:-2.56822,0,-47.6004 dDocent_Contig_9533 21 . A G 238.633 . AB=0.230769;ABP=35.7494;AC=2;AF=0.333333;AN=6;AO=12;CIGAR=1X;DP=78;DPB=78;DPRA=1;EPP=29.068;EPPR=146.327;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=470;QR=2625;RO=66;RPL=0;RPP=29.068;RPPR=146.327;RPR=12;RUN=1;SAF=12;SAP=29.068;SAR=0;SRF=66;SRP=146.327;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:26:26,0:26:1042:0:0:0,-7.82678,-94.0727 0/1:38:33,5:33:1305:5:197:-6.66614,0,-106.279 0/1:14:7,7:7:278:7:273:-20.72,0,-21.1754 dDocent_Contig_9535 37 . C A 947.435 . AB=0.454545;ABP=4.39215;AC=3;AF=0.5;AN=6;AO=35;CIGAR=1X;DP=77;DPB=77;DPRA=0;EPP=79.0118;EPPR=94.2121;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=0;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=1360;QR=1671;RO=42;RPL=0;RPP=79.0118;RPPR=94.2121;RPR=35;RUN=1;SAF=35;SAP=79.0118;SAR=0;SRF=42;SRP=94.2121;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:35:21,14:21:835:14:539:-38.3077,0,-64.9246 0/1:24:6,18:6:229:18:700:-56.097,0,-13.7447 0/1:18:15,3:15:607:3:121:-5.86166,0,-49.5497 dDocent_Contig_9536 7 . G A 68.8668 . AB=0.16129;ABP=33.9012;AC=1;AF=0.166667;AN=6;AO=9;CIGAR=1X;DP=184;DPB=184;DPRA=0;EPP=22.5536;EPPR=376.504;GTI=0;LEN=1;MEANALT=1.66667;MQM=60;MQMR=58.8721;NS=3;NUMALT=1;ODDS=0;PAIRED=0.555556;PAIREDR=0.44186;PAO=0;PQA=0;PQR=0;PRO=0;QA=349;QR=5726;RO=172;RPL=0;RPP=22.5536;RPPR=376.504;RPR=9;RUN=1;SAF=9;SAP=22.5536;SAR=0;SRF=172;SRP=376.504;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:31:26,5:26:857:5:193:-8.40956,0,-68.0779 0/0:99:95,2:95:3274:2:78:0,-22.1013,-284.764 0/0:54:51,2:51:1595:2:78:0,-8.75434,-134.324 dDocent_Contig_9539 1 . N G 62.6579 . AB=0;ABP=0;AC=2;AF=1;AN=2;AO=2;CIGAR=1X;DP=2;DPB=2;DPRA=0;EPP=7.35324;EPPR=0;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=0;NS=1;NUMALT=1;ODDS=5.99146;PAIRED=1;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=66;QR=0;RO=0;RPL=0;RPP=7.35324;RPPR=0;RPR=2;RUN=1;SAF=2;SAP=7.35324;SAR=0;SRF=0;SRP=0;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL ./.:.:.:.:.:.:.:. 1/1:2:0,2:0:0:2:66:-6.26471,-0.60206,0 ./.:.:.:.:.:.:.:. dDocent_Contig_9540 31 . G A 465.49 . AB=0.0769231;ABP=43.4331;AC=0;AF=0;AN=6;AO=2;CIGAR=1M3X;DP=95;DPB=95;DPRA=0;EPP=7.35324;EPPR=83.3548;GTI=0;LEN=1;MEANALT=5;MQM=40;MQMR=60;NS=3;NUMALT=8;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=78;QR=1454;RO=37;RPL=0;RPP=7.35324;RPPR=83.3548;RPR=2;RUN=1;SAF=2;SAP=7.35324;SAR=0;SRF=37;SRP=83.3548;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|0:26:13,2,0,0,0,4,2,0,4:13:507:2,0,0,0,4,2,0,4:80,0,0,0,139,78,0,158:-9.09728,-6.41551,-47.4966,-13.0107,-48.0987,-54.6904,-13.0107,-48.0987,-54.6904,-54.6904,-13.0107,-48.0987,-54.6904,-54.6904,-54.6904,-2.24271,-37.3226,-43.9138,-43.9138,-43.9138,-42.7097,-7.05622,-42.1442,-48.7359,-48.7359,-48.7359,-37.9605,-48.1339,-13.0107,-48.0987,-54.6904,-54.6904,-54.6904,-43.9138,-48.7359,-54.6904,0,-35.095,-41.6872,-41.6872,-41.6872,-30.912,-35.7328,-41.6872,-40.4831 0|0:56:22,0,1,5,6,10,0,10,2:22:867:0,1,5,6,10,0,10,2:0,33,199,222,357,0,394,80:-25.8007,-32.4233,-103.756,-29.7572,-101.09,-100.789,-16.0339,-87.3694,-84.703,-85.8643,-14.2639,-85.5975,-82.9312,-69.2105,-83.7913,-4.51341,-75.8421,-73.1761,-59.4559,-57.6849,-72.8318,-32.4233,-103.756,-101.09,-87.3694,-85.5975,-75.8421,-103.756,0,-71.3387,-68.6723,-54.9511,-53.1798,-43.426,-71.3387,-68.3284,-25.8318,-97.1657,-94.4993,-80.7787,-79.0069,-69.2517,-97.1657,-64.7478,-96.5637 0|0:13:2,0,3,0,0,1,0,0,7:2:80:0,3,0,0,1,0,0,7:0,102,0,0,32,0,0,221:-17.1699,-17.7719,-24.3765,-9.48526,-16.0968,-15.1937,-17.7719,-24.3765,-16.0968,-24.3765,-17.7719,-24.3765,-16.0968,-24.3765,-24.3765,-15.2496,-21.8556,-13.5753,-21.8556,-21.8556,-21.5545,-17.7719,-24.3765,-16.0968,-24.3765,-24.3765,-21.8556,-24.3765,-17.7719,-24.3765,-16.0968,-24.3765,-24.3765,-21.8556,-24.3765,-24.3765,-1.64606,-8.25831,0,-8.25831,-8.25831,-5.74516,-8.25831,-8.25831,-6.1511 dDocent_Contig_9541 17 . C T 86.818 . AB=0.333333;ABP=5.9056;AC=1;AF=0.166667;AN=6;AO=4;CIGAR=1X;DP=47;DPB=47;DPRA=0.685714;EPP=11.6962;EPPR=96.3836;GTI=0;LEN=1;MEANALT=1;MQM=40;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=0;PAIREDR=0.883721;PAO=0;PQA=0;PQR=0;PRO=0;QA=163;QR=1728;RO=43;RPL=0;RPP=11.6962;RPPR=96.3836;RPR=4;RUN=1;SAF=4;SAP=11.6962;SAR=0;SRF=43;SRP=96.3836;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:12:8,4:8:317:4:163:-10.2047,0,-25.2824 0/0:22:22,0:22:880:0:0:0,-6.62266,-79.5076 0/0:13:13,0:13:531:0:0:0,-3.91339,-48.1364 dDocent_Contig_9542 12 . T G 200.411 . AB=0.444444;ABP=3.49285;AC=1;AF=0.166667;AN=6;AO=8;CIGAR=1X;DP=27;DPB=27;DPRA=4;EPP=20.3821;EPPR=44.2683;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=296;QR=742;RO=19;RPL=0;RPP=20.3821;RPPR=44.2683;RPR=8;RUN=1;SAF=8;SAP=20.3821;SAR=0;SRF=19;SRP=44.2683;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:18:10,8:10:381:8:296:-21.5632,0,-29.22 0/0:8:8,0:8:323:0:0:0,-2.40824,-29.4381 0/0:1:1,0:1:38:0:0:0,-0.30103,-3.79727 dDocent_Contig_9543 21 . A G 365.55 . AB=0.348837;ABP=11.5447;AC=3;AF=0.5;AN=6;AO=15;CIGAR=1M1X;DP=43;DPB=44.5;DPRA=0;EPP=35.5824;EPPR=57.2971;GTI=0;LEN=1;MEANALT=1.33333;MQM=60;MQMR=60;NS=3;NUMALT=2;ODDS=6.93889e-18;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=589;QR=981;RO=25;RPL=0;RPP=35.5824;RPPR=57.2971;RPR=15;RUN=1;SAF=15;SAP=35.5824;SAR=0;SRF=25;SRP=57.2971;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|1:23:9,3,11:9:357:3,11:122,431:-32.7153,-25.3582,-53.845,0,-19.3146,-26.069 0|1:12:9,0,3:9:344:0,3:0,117:-7.29734,-10.0066,-38.2201,0,-28.6012,-27.6981 0|1:8:7,0,1:7:280:0,1:0,41:-1.68633,-3.79354,-26.8498,0,-23.4645,-23.1635 dDocent_Contig_9544 39 . A G 125.177 . AB=0.142857;ABP=10.7656;AC=3;AF=0.5;AN=6;AO=5;CIGAR=1X;DP=21;DPB=21;DPRA=0.55;EPP=13.8677;EPPR=37.7539;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=169;QR=514;RO=16;RPL=0;RPP=13.8677;RPPR=37.7539;RPR=5;RUN=1;SAF=5;SAP=13.8677;SAR=0;SRF=16;SRP=37.7539;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:10:10,0:10:314:0:0:0,-3.0103,-28.5628 0/1:7:6,1:6:200:1:36:-1.49107,0,-16.2205 1/1:4:0,4:0:0:4:133:-12.2988,-1.20412,0 dDocent_Contig_9545 14 . G A 2150.64 . AB=0.480519;ABP=3.51792;AC=3;AF=0.5;AN=6;AO=74;CIGAR=1X;DP=154;DPB=154;DPRA=0;EPP=163.699;EPPR=176.728;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=0.9875;PAO=0;PQA=0;PQR=0;PRO=0;QA=2956;QR=3212;RO=80;RPL=0;RPP=163.699;RPPR=176.728;RPR=74;RUN=1;SAF=74;SAP=163.699;SAR=0;SRF=80;SRP=176.728;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:105:51,54:51:2034:54:2153:-162.341,0,-151.638 0/1:4:2,2:2:82:2:82:-6.57556,0,-6.57556 0/1:45:27,18:27:1096:18:721:-51.6703,0,-85.3775 dDocent_Contig_9546 50 . A C 1077.22 . AB=0.654545;ABP=14.4204;AC=3;AF=0.5;AN=6;AO=36;CIGAR=1X;DP=55;DPB=55;DPRA=0;EPP=81.1833;EPPR=44.2683;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=1431;QR=766;RO=19;RPL=36;RPP=81.1833;RPPR=44.2683;RPR=0;RUN=1;SAF=36;SAP=81.1833;SAR=0;SRF=19;SRP=44.2683;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:42:11,31:11:441:31:1239:-99.1398,0,-27.4023 0/1:5:3,2:3:120:2:70:-5.14107,0,-9.68254 0/1:8:5,3:5:205:3:122:-8.96425,0,-16.4268 dDocent_Contig_9547 9 . T C 39.9795 . AB=0.5;ABP=3.0103;AC=1;AF=0.166667;AN=6;AO=2;CIGAR=1X;DP=33;DPB=33;DPRA=0.275862;EPP=7.35324;EPPR=70.3259;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=4.33681e-19;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=74;QR=1145;RO=31;RPL=0;RPP=7.35324;RPPR=70.3259;RPR=2;RUN=1;SAF=2;SAP=7.35324;SAR=0;SRF=31;SRP=70.3259;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:20:20,0:20:746:0:0:0,-6.0206,-67.468 0/1:4:2,2:2:70:2:74:-5.82176,0,-5.44328 0/0:9:9,0:9:329:0:0:0,-2.70927,-29.9569 dDocent_Contig_9548 20 . A T 69.3199 . AB=0.3;ABP=6.48466;AC=1;AF=0.166667;AN=6;AO=4;CIGAR=1X;DP=30;DPB=30;DPRA=7;EPP=11.6962;EPPR=59.4686;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=1.73472e-18;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=159;QR=1019;RO=26;RPL=0;RPP=11.6962;RPPR=59.4686;RPR=4;RUN=1;SAF=4;SAP=11.6962;SAR=0;SRF=26;SRP=59.4686;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:10:7,3:7:283:3:123:-8.45449,0,-22.8327 0/0:2:2,0:2:78:0:0:0,-0.60206,-7.4033 0/0:18:17,1:17:658:1:36:0,-1.82026,-55.9426 dDocent_Contig_9549 79 . G A 352.467 . AB=0.619048;ABP=5.59539;AC=1;AF=0.166667;AN=6;AO=13;CIGAR=1X;DP=44;DPB=44;DPRA=1.82609;EPP=31.2394;EPPR=70.3259;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=1.73472e-18;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=475;QR=1062;RO=31;RPL=13;RPP=31.2394;RPPR=70.3259;RPR=0;RUN=1;SAF=13;SAP=31.2394;SAR=0;SRF=31;SRP=70.3259;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:21:8,13:8:246:13:475:-36.7696,0,-16.1181 0/0:11:11,0:11:397:0:0:0,-3.31133,-36.0714 0/0:12:12,0:12:419:0:0:0,-3.61236,-38.0438 dDocent_Contig_9550 190 . C T 204.469 . AB=0.204082;ABP=40.2799;AC=1;AF=0.166667;AN=6;AO=10;CIGAR=1X;DP=64;DPB=64;DPRA=6.53333;EPP=24.725;EPPR=120.27;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=404;QR=2147;RO=54;RPL=10;RPP=24.725;RPPR=120.27;RPR=0;RUN=1;SAF=0;SAP=24.725;SAR=10;SRF=0;SRP=120.27;SRR=54;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:49:39,10:39:1566:10:404:-21.9696,0,-126.426 0/0:3:3,0:3:92:0:0:0,-0.90309,-8.58101 0/0:12:12,0:12:489:0:0:0,-3.61236,-44.3611 dDocent_Contig_9551 7 . G A 5530.6 . AB=0.244141;ABP=585.27;AC=3;AF=0.5;AN=6;AO=250;CIGAR=1X;DP=1024;DPB=1024;DPRA=0;EPP=545.878;EPPR=1434.22;GTI=0;LEN=1;MEANALT=3;MQM=58.496;MQMR=59.07;NS=3;NUMALT=1;ODDS=0;PAIRED=0.608;PAIREDR=0.282913;PAO=0;PQA=0;PQR=0;PRO=0;QA=9478;QR=23612;RO=714;RPL=0;RPP=545.878;RPPR=1553.44;RPR=250;RUN=1;SAF=250;SAP=545.878;SAR=0;SRF=700;SRP=1434.22;SRR=14;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:258:129,114:129:4054:114:4343:-317.196,0,-291.396 0/1:478:389,62:389:13384:62:2351:-74.3958,0,-1058.06 0/1:288:196,74:196:6174:74:2784:-166.991,0,-472.672 dDocent_Contig_9552 16 . C G 301.812 . AB=0.265306;ABP=26.4533;AC=2;AF=0.333333;AN=6;AO=14;CIGAR=1X;DP=63;DPB=63;DPRA=0;EPP=33.4109;EPPR=109.412;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=0.785714;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=571;QR=1941;RO=49;RPL=0;RPP=33.4109;RPPR=109.412;RPR=14;RUN=1;SAF=14;SAP=33.4109;SAR=0;SRF=49;SRP=109.412;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:37:28,9:28:1117:9:367:-22.2569,0,-89.6721 0/0:14:13,1:13:501:1:41:0,-0.119853,-41.3283 0/1:12:8,4:8:323:4:163:-11.4461,0,-25.8251 dDocent_Contig_9556 121 . G T 45.4674 . AB=0.25;ABP=9.52472;AC=1;AF=0.166667;AN=6;AO=6;CIGAR=1X;DP=65;DPB=65;DPRA=0;EPP=16.0391;EPPR=131.127;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=216;QR=2003;RO=59;RPL=0;RPP=16.0391;RPPR=131.127;RPR=6;RUN=1;SAF=0;SAP=16.0391;SAR=6;SRF=0;SRP=131.127;SRR=59;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:24:22,2:22:763:2:74:0,-0.198844,-61.9648 0/1:12:9,3:9:320:3:107:-6.36972,0,-25.5303 0/0:29:28,1:28:920:1:35:0,-5.23124,-79.598 dDocent_Contig_9557 15 . A C 85.6306 . AB=0.285714;ABP=8.59409;AC=1;AF=0.166667;AN=6;AO=5;CIGAR=1X;DP=37;DPB=37;DPRA=18;EPP=13.8677;EPPR=72.4974;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=199;QR=1273;RO=32;RPL=0;RPP=13.8677;RPPR=72.4974;RPR=5;RUN=1;SAF=5;SAP=13.8677;SAR=0;SRF=32;SRP=72.4974;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:22:21,1:21:830:1:41:0,-2.52809,-70.9232 0/1:14:10,4:10:402:4:158:-10.3862,0,-32.3256 0/0:1:1,0:1:41:0:0:0,-0.30103,-4.09457 dDocent_Contig_9558 134 . G A 58.2459 . AB=0.185185;ABP=26.2531;AC=2;AF=0.333333;AN=6;AO=5;CIGAR=1X;DP=33;DPB=33;DPRA=2.25;EPP=13.8677;EPPR=63.8115;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=171;QR=886;RO=28;RPL=0;RPP=13.8677;RPPR=63.8115;RPR=5;RUN=1;SAF=0;SAP=13.8677;SAR=5;SRF=0;SRP=63.8115;SRR=28;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:18:14,4:14:438:4:138:-7.34186,0,-34.3011 0/0:6:6,0:6:184:0:0:0,-1.80618,-16.8626 0/1:9:8,1:8:264:1:33:-0.589865,0,-21.3736 dDocent_Contig_9559 15 . G A 3187.55 . AB=0.740157;ABP=66.6327;AC=4;AF=0.666667;AN=6;AO=101;CIGAR=1X;DP=134;DPB=134;DPRA=0;EPP=222.329;EPPR=74.6689;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=3997;QR=1309;RO=33;RPL=0;RPP=222.329;RPPR=74.6689;RPR=101;RUN=1;SAF=101;SAP=222.329;SAR=0;SRF=33;SRP=74.6689;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:94:28,66:28:1109:66:2616:-207.277,0,-71.7967 1/1:7:0,7:0:0:7:273:-24.9344,-2.10721,0 0/1:33:5,28:5:200:28:1108:-90.0666,0,-8.44555 dDocent_Contig_9560 13 . C A 419.626 . AB=0.174825;ABP=134.346;AC=2;AF=0.333333;AN=6;AO=25;CIGAR=1X;DP=157;DPB=157;DPRA=5.10714;EPP=57.2971;EPPR=289.645;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=976;QR=5258;RO=132;RPL=0;RPP=57.2971;RPPR=289.645;RPR=25;RUN=1;SAF=25;SAP=57.2971;SAR=0;SRF=132;SRP=289.645;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:84:69,15:69:2747:15:586:-27.7885,0,-222.062 0/0:14:14,0:14:548:0:0:0,-4.21442,-49.6614 0/1:59:49,10:49:1963:10:390:-17.697,0,-159.103 dDocent_Contig_9561 95 . A T 275.731 . AB=0.35;ABP=10.8276;AC=2;AF=0.5;AN=4;AO=14;CIGAR=1X;DP=40;DPB=40;DPRA=0;EPP=33.4109;EPPR=59.4686;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=2;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=474;QR=886;RO=26;RPL=14;RPP=33.4109;RPPR=59.4686;RPR=0;RUN=1;SAF=14;SAP=33.4109;SAR=0;SRF=26;SRP=59.4686;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL ./.:.:.:.:.:.:.:. 0/1:22:12,10:12:418:10:345:-24.761,0,-31.3312 0/1:18:14,4:14:468:4:129:-6.51105,0,-37.0218 dDocent_Contig_9562 39 . C A 30.1581 . AB=0.333333;ABP=4.45795;AC=1;AF=0.166667;AN=6;AO=2;CIGAR=1X;DP=47;DPB=47;DPRA=0.292683;EPP=7.35324;EPPR=100.727;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=8.67362e-19;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=70;QR=1726;RO=45;RPL=0;RPP=7.35324;RPPR=100.727;RPR=2;RUN=1;SAF=2;SAP=7.35324;SAR=0;SRF=45;SRP=100.727;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:27:27,0:27:1038:0:0:0,-8.12781,-93.7243 0/0:14:14,0:14:543:0:0:0,-4.21442,-49.2124 0/1:6:4,2:4:145:2:70:-4.8393,0,-11.5964 dDocent_Contig_9564 122 . T C 46.3891 . AB=0.25;ABP=9.52472;AC=1;AF=0.166667;AN=6;AO=3;CIGAR=1X;DP=34;DPB=34;DPRA=1.09091;EPP=9.52472;EPPR=54.0749;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=45.2581;NS=3;NUMALT=1;ODDS=0;PAIRED=0;PAIREDR=0.419355;PAO=0;PQA=0;PQR=0;PRO=0;QA=108;QR=1113;RO=31;RPL=0;RPP=9.52472;RPPR=70.3259;RPR=3;RUN=1;SAF=0;SAP=9.52472;SAR=3;SRF=2;SRP=54.0749;SRR=29;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:12:12,0:12:448:0:0:0,-3.61236,-30.5491 0/1:12:9,3:9:315:3:108:-6.46281,0,-24.1027 0/0:10:10,0:10:350:0:0:0,-3.0103,-31.3095 dDocent_Contig_9565 57 . C T 125.018 . AB=0.26087;ABP=14.4341;AC=1;AF=0.166667;AN=6;AO=6;CIGAR=1X2M1I8M;DP=81;DPB=81.5455;DPRA=0.793103;EPP=16.0391;EPPR=161.528;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=232;QR=2593;RO=73;RPL=6;RPP=16.0391;RPPR=161.528;RPR=0;RUN=1;SAF=6;SAP=16.0391;SAR=0;SRF=73;SRP=161.528;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|0:56:54,0:54:1916:0:0:0,-16.2556,-172.608 0|0:2:2,0:2:74:0:0:0,-0.60206,-7.02588 0|1:23:17,6:17:603:6:232:-14.3254,0,-47.6772 dDocent_Contig_9566 71 . T C 607.137 . AB=0.462963;ABP=3.6537;AC=3;AF=0.5;AN=6;AO=25;CIGAR=1X;DP=54;DPB=54;DPRA=0;EPP=57.2971;EPPR=65.983;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=905;QR=1032;RO=29;RPL=25;RPP=57.2971;RPPR=65.983;RPR=0;RUN=1;SAF=25;SAP=57.2971;SAR=0;SRF=29;SRP=65.983;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:10:6,4:6:216:4:152:-11.0392,0,-16.7776 0/1:31:13,18:13:486:18:646:-49.1287,0,-34.7473 0/1:13:10,3:10:330:3:107:-6.06869,0,-26.1059 dDocent_Contig_9568 7 . G A 312.323 . AB=0.17094;ABP=113.05;AC=2;AF=0.333333;AN=6;AO=20;CIGAR=1X;DP=119;DPB=119;DPRA=29.25;EPP=46.4397;EPPR=213.643;GTI=0;LEN=1;MEANALT=1.5;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=765;QR=3028;RO=97;RPL=0;RPP=46.4397;RPPR=213.643;RPR=20;RUN=1;SAF=20;SAP=46.4397;SAR=0;SRF=97;SRP=213.643;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:94:81,11:81:2553:11:421:-10.3615,0,-202.106 0/0:2:2,0:2:42:0:0:0,-0.60206,-3.98934 0/1:23:14,9:14:433:9:344:-24.3933,0,-32.3405 dDocent_Contig_9569 7 . G A 823.053 . AB=0.382022;ABP=13.7701;AC=3;AF=0.5;AN=6;AO=34;CIGAR=1X;DP=89;DPB=89;DPRA=0;EPP=76.8404;EPPR=118.098;GTI=0;LEN=1;MEANALT=1.66667;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=0;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=1258;QR=1731;RO=53;RPL=0;RPP=76.8404;RPPR=118.098;RPR=34;RUN=1;SAF=34;SAP=76.8404;SAR=0;SRF=53;SRP=118.098;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:58:36,21:36:1140:21:761:-51.5268,0,-85.5929 0/1:4:2,2:2:71:2:78:-6.19935,0,-5.53778 0/1:27:15,11:15:520:11:419:-30.102,0,-39.1677 dDocent_Contig_9570 98 . N A 647.857 . AB=0;ABP=0;AC=6;AF=1;AN=6;AO=20;CIGAR=1X;DP=20;DPB=20;DPRA=0;EPP=46.4397;EPPR=0;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=0;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=703;QR=0;RO=0;RPL=20;RPP=46.4397;RPPR=0;RPR=0;RUN=1;SAF=20;SAP=46.4397;SAR=0;SRF=0;SRP=0;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 1/1:13:0,13:0:0:13:454:-41.193,-3.91339,0 1/1:1:0,1:0:0:1:36:-3.59827,-0.30103,0 1/1:6:0,6:0:0:6:213:-19.5165,-1.80618,0 dDocent_Contig_9571 15 . A C 67.7968 . AB=0.375;ABP=4.09604;AC=1;AF=0.25;AN=4;AO=3;CIGAR=1X2M1X;DP=15;DPB=15;DPRA=1.14286;EPP=9.52472;EPPR=29.068;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=2;NUMALT=1;ODDS=0;PAIRED=0;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=120;QR=482;RO=12;RPL=0;RPP=9.52472;RPPR=29.068;RPR=3;RUN=1;SAF=3;SAP=9.52472;SAR=0;SRF=12;SRP=29.068;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|0:7:7,0:7:281:0:0:0,-2.10721,-25.6622 .:.:.:.:.:.:.:. 0|1:8:5,3:5:201:3:120:-8.77966,0,-16.0629 dDocent_Contig_9572 15 . A T 563.575 . AB=0.567568;ABP=4.47751;AC=3;AF=0.5;AN=6;AO=21;CIGAR=1X;DP=37;DPB=37;DPRA=0;EPP=48.6112;EPPR=37.7539;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=800;QR=633;RO=16;RPL=0;RPP=48.6112;RPPR=37.7539;RPR=21;RUN=1;SAF=21;SAP=48.6112;SAR=0;SRF=16;SRP=37.7539;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:7:2,5:2:80:5:205:-16.7278,0,-5.48436 0/1:18:5,13:5:196:13:506:-40.4652,0,-12.5949 0/1:12:9,3:9:357:3:89:-4.68706,0,-28.8802 dDocent_Contig_9573 10 . A G 68.3171 . AB=0.21875;ABP=24.9965;AC=0;AF=0;AN=6;AO=7;CIGAR=1X2M1X2M1X2M4X6M;DP=50;DPB=50;DPRA=0.888889;EPP=18.2106;EPPR=65.983;GTI=0;LEN=1;MEANALT=3;MQM=9.42857;MQMR=60;NS=3;NUMALT=3;ODDS=0;PAIRED=0;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=66;QR=1143;RO=29;RPL=0;RPP=18.2106;RPPR=65.983;RPR=7;RUN=1;SAF=7;SAP=18.2106;SAR=0;SRF=29;SRP=65.983;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|0:20:9,3,6,1:9:350:3,6,1:29,238,41:-1.4032,-3.16486,-31.151,0,-28.013,-27.1122,-0.699968,-28.6616,-25.526,-29.2981 0|0:18:15,0,0,0:15:593:0,0,0:0,0,0:0,-4.51545,-53.3102,-4.51545,-53.3102,-53.3102,-4.51545,-53.3102,-53.3102,-53.3102 0|0:12:5,4,0,3:5:200:4,0,3:37,0,121:-8.61374,-9.16284,-24.4321,-10.1189,-25.6362,-26.6733,0,-15.6607,-16.6611,-15.758 dDocent_Contig_9574 107 . N C 257.76 . AB=0;ABP=0;AC=2;AF=1;AN=2;AO=9;CIGAR=1X;DP=9;DPB=9;DPRA=0;EPP=22.5536;EPPR=0;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=0;NS=1;NUMALT=1;ODDS=10.8435;PAIRED=1;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=283;QR=0;RO=0;RPL=0;RPP=22.5536;RPPR=0;RPR=9;RUN=1;SAF=0;SAP=22.5536;SAR=9;SRF=0;SRP=0;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 1/1:9:0,9:0:0:9:283:-25.776,-2.70927,0 ./.:.:.:.:.:.:.:. ./.:.:.:.:.:.:.:. dDocent_Contig_9575 34 . T C 182.827 . AB=0;ABP=0;AC=2;AF=0.333333;AN=6;AO=5;CIGAR=1X3M1X;DP=40;DPB=40;DPRA=0.285714;EPP=13.8677;EPPR=79.0118;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=197;QR=1380;RO=35;RPL=5;RPP=13.8677;RPPR=79.0118;RPR=0;RUN=1;SAF=5;SAP=13.8677;SAR=0;SRF=35;SRP=79.0118;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|0:22:22,0:22:863:0:0:0,-6.62266,-77.9873 1|1:5:0,5:0:0:5:197:-18.1066,-1.50515,0 0|0:13:13,0:13:517:0:0:0,-3.91339,-46.8785 dDocent_Contig_9577 107 . N T 787.677 . AB=0;ABP=0;AC=6;AF=1;AN=6;AO=26;CIGAR=1X;DP=26;DPB=26;DPRA=0;EPP=59.4686;EPPR=0;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=0;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=859;QR=0;RO=0;RPL=0;RPP=59.4686;RPPR=0;RPR=26;RUN=1;SAF=0;SAP=59.4686;SAR=26;SRF=0;SRP=0;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 1/1:13:0,13:0:0:13:440:-39.9243,-3.91339,0 1/1:2:0,2:0:0:2:70:-6.6474,-0.60206,0 1/1:11:0,11:0:0:11:349:-31.7185,-3.31133,0 dDocent_Contig_9582 18 . T G 732.677 . AB=0.0289017;ABP=336.501;AC=0;AF=0;AN=6;AO=7;CIGAR=3M1X3M;DP=210;DPB=254.571;DPRA=0;EPP=18.2106;EPPR=356.96;GTI=0;LEN=1;MEANALT=2.66667;MQM=60;MQMR=60;NS=3;NUMALT=2;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=282;QR=6456;RO=163;RPL=0;RPP=18.2106;RPPR=356.96;RPR=7;RUN=1;SAF=7;SAP=18.2106;SAR=0;SRF=163;SRP=356.96;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|0:159:119,33,4:119:4713:33,4:1271,160:-68.5181,0,-377.975,-91.1594,-374.729,-477.868 0|0:14:9,4,1:9:357:4,1:136,40:-8.27252,0,-28.1809,-7.67476,-26.0896,-36.8008 0|0:37:35,0,2:35:1386:0,2:0,82:0,-10.536,-124.591,-3.35843,-117.822,-117.22 dDocent_Contig_9584 29 . G A 94.9052 . AB=0.4;ABP=3.87889;AC=1;AF=0.166667;AN=6;AO=4;CIGAR=1X;DP=55;DPB=55;DPRA=0.444444;EPP=11.6962;EPPR=113.755;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=155;QR=2029;RO=51;RPL=0;RPP=11.6962;RPPR=113.755;RPR=4;RUN=1;SAF=4;SAP=11.6962;SAR=0;SRF=51;SRP=113.755;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:27:27,0:27:1093:0:0:0,-8.12781,-98.6553 0/1:10:6,4:6:242:4:155:-11.3144,0,-19.1466 0/0:18:18,0:18:694:0:0:0,-5.41854,-62.7751 dDocent_Contig_9585 19 . G A 548.257 . AB=0.142857;ABP=266.689;AC=3;AF=0.5;AN=6;AO=34;CIGAR=1M1X3M;DP=238;DPB=233.2;DPRA=0;EPP=76.8404;EPPR=376.504;GTI=0;LEN=1;MEANALT=2.66667;MQM=60;MQMR=60;NS=3;NUMALT=3;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=1361;QR=6717;RO=172;RPL=0;RPP=76.8404;RPPR=376.504;RPR=34;RUN=1;SAF=34;SAP=76.8404;SAR=0;SRF=172;SRP=376.504;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|1:138:100,13,17,7:100:3920:13,17,7:503,689,279:-26.7196,-15.5176,-333.938,0,-281.034,-317.226,-33.8469,-314.876,-299.368,-354.079 0|1:23:18,1,4,0:18:697:1,4,0:40,159,0:-7.66972,-9.79268,-66.7381,0,-53.947,-56.0386,-13.0883,-67.0391,-57.2427,-70.3346 0|1:77:54,10,13,0:54:2100:10,13,0:381,513,0:-25.9593,-10.9759,-180.523,0,-141.325,-168.655,-42.2149,-183.533,-172.569,-214.777 dDocent_Contig_9587 45 . G C 1876.61 . AB=0.652778;ABP=17.6074;AC=4;AF=0.666667;AN=6;AO=61;CIGAR=1X;DP=87;DPB=87;DPRA=0;EPP=135.47;EPPR=59.4686;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=2399;QR=1010;RO=26;RPL=0;RPP=135.47;RPPR=59.4686;RPR=61;RUN=1;SAF=61;SAP=135.47;SAR=0;SRF=26;SRP=59.4686;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:54:18,36:18:689:36:1400:-109.991,0,-46.073 1/1:15:1,14:1:40:14:553:-46.1155,-0.519771,0 0/1:18:7,11:7:281:11:446:-35.0774,0,-20.2436 dDocent_Contig_9588 7 . G A 65.8697 . AB=0.266667;ABP=10.1038;AC=2;AF=0.333333;AN=6;AO=4;CIGAR=1X;DP=19;DPB=19;DPRA=1.875;EPP=11.6962;EPPR=33.4109;GTI=0;LEN=1;MEANALT=1.5;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=153;QR=429;RO=14;RPL=0;RPP=11.6962;RPPR=33.4109;RPR=4;RUN=1;SAF=4;SAP=11.6962;SAR=0;SRF=14;SRP=33.4109;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:4:4,0:4:127:0:0:0,-1.20412,-11.7439 0/1:8:5,2:5:160:2:76:-4.90756,0,-12.4592 0/1:7:5,2:5:142:2:77:-5.20193,0,-10.9513 dDocent_Contig_9589 21 . G A 100.662 . AB=0.4;ABP=3.87889;AC=1;AF=0.166667;AN=6;AO=4;CIGAR=1X;DP=35;DPB=35;DPRA=0.8;EPP=11.6962;EPPR=70.3259;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=158;QR=1252;RO=31;RPL=0;RPP=11.6962;RPPR=70.3259;RPR=4;RUN=1;SAF=4;SAP=11.6962;SAR=0;SRF=31;SRP=70.3259;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:10:6,4:6:242:4:158:-11.5891,0,-19.1466 0/0:8:8,0:8:321:0:0:0,-2.40824,-29.2577 0/0:17:17,0:17:689:0:0:0,-5.11751,-62.3391 dDocent_Contig_9590 7 . G A 44.7927 . AB=0.1875;ABP=16.582;AC=1;AF=0.166667;AN=6;AO=3;CIGAR=1X;DP=22;DPB=22;DPRA=5.33333;EPP=9.52472;EPPR=44.2683;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=0.333333;PAIREDR=0.947368;PAO=0;PQA=0;PQR=0;PRO=0;QA=116;QR=590;RO=19;RPL=0;RPP=9.52472;RPPR=44.2683;RPR=3;RUN=1;SAF=3;SAP=9.52472;SAR=0;SRF=19;SRP=44.2683;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:16:13,3:13:416:3:116:-6.00122,0,-32.9252 0/0:1:1,0:1:30:0:0:0,-0.30103,-2.99957 0/0:5:5,0:5:144:0:0:0,-1.50515,-13.241 dDocent_Contig_9591 38 . C T 32.9844 . AB=0.0833333;ABP=93.4883;AC=1;AF=0.166667;AN=6;AO=9;CIGAR=1M1X1M;DP=130;DPB=129;DPRA=0;EPP=22.5536;EPPR=250.632;GTI=0;LEN=1;MEANALT=1.33333;MQM=57.7778;MQMR=58.6186;NS=3;NUMALT=2;ODDS=6.93889e-18;PAIRED=0.333333;PAIREDR=0.694915;PAO=0;PQA=0;PQR=0;PRO=0;QA=357;QR=4582;RO=118;RPL=0;RPP=22.5536;RPPR=259.244;RPR=9;RUN=1;SAF=9;SAP=22.5536;SAR=0;SRF=117;SRP=250.632;SRR=1;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|0:70:66,0,4:66:2570:0,4:0,157:0,-19.868,-229.064,-6.59674,-216.184,-214.98 0|1:45:41,0,4:41:1582:0,4:0,160:-1.23745,-13.5797,-143.11,0,-129.928,-128.724 0|0:15:11,3,1:11:430:3,1:104,40:-5.09781,0,-33.1003,-5.10076,-30.7065,-38.8479 dDocent_Contig_9592 114 . G A 82.3759 . AB=0.222222;ABP=21.1059;AC=1;AF=0.166667;AN=6;AO=11;CIGAR=1X;DP=124;DPB=124;DPRA=2.08333;EPP=26.8965;EPPR=176.44;GTI=0;LEN=1;MEANALT=1;MQM=49.9091;MQMR=42.4159;NS=3;NUMALT=1;ODDS=0;PAIRED=0;PAIREDR=0.442478;PAO=0;PQA=0;PQR=0;PRO=0;QA=375;QR=3902;RO=113;RPL=0;RPP=26.8965;RPPR=248.387;RPR=11;RUN=1;SAF=0;SAP=26.8965;SAR=11;SRF=9;SRP=176.44;SRR=104;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:73:68,5:68:2334:5:175:0,-7.0221,-165.726 0/1:27:21,6:21:728:6:200:-10.0615,0,-42.0811 0/0:24:24,0:24:840:0:0:0,-7.22472,-65.5869 dDocent_Contig_9594 40 . T G 179.081 . AB=0.35;ABP=6.91895;AC=1;AF=0.166667;AN=6;AO=9;CIGAR=1X;DP=63;DPB=63;DPRA=3;EPP=22.5536;EPPR=120.27;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=364;QR=2124;RO=54;RPL=0;RPP=22.5536;RPPR=120.27;RPR=9;RUN=1;SAF=9;SAP=22.5536;SAR=0;SRF=54;SRP=120.27;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:34:32,2:32:1274:2:82:0,-2.45534,-107.146 0/0:9:9,0:9:332:0:0:0,-2.70927,-30.2274 0/1:20:13,7:13:518:7:282:-19.732,0,-40.9459 dDocent_Contig_9597 7 . G A 250.65 . AB=0.454545;ABP=3.40511;AC=2;AF=0.333333;AN=6;AO=10;CIGAR=1X;DP=28;DPB=28;DPRA=1.83333;EPP=24.725;EPPR=42.0968;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=383;QR=552;RO=18;RPL=0;RPP=24.725;RPPR=42.0968;RPR=10;RUN=1;SAF=10;SAP=24.725;SAR=0;SRF=18;SRP=42.0968;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:16:10,6:10:286:6:227:-15.9767,0,-21.1954 0/0:6:6,0:6:189:0:0:0,-1.80618,-17.3195 0/1:6:2,4:2:77:4:156:-12.6111,0,-5.50296 dDocent_Contig_9599 166 . T C 163.937 . AB=0.16;ABP=78.317;AC=2;AF=0.333333;AN=6;AO=12;CIGAR=1X;DP=81;DPB=81;DPRA=6.25;EPP=29.068;EPPR=120.112;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=464;QR=2710;RO=69;RPL=12;RPP=29.068;RPPR=120.112;RPR=0;RUN=1;SAF=0;SAP=29.068;SAR=12;SRF=0;SRP=152.842;SRR=69;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:46:39,7:39:1523:7:265:-10.3577,0,-123.469 0/0:6:6,0:6:243:0:0:0,-1.80618,-22.2482 0/1:29:24,5:24:944:5:199:-9.55886,0,-76.5283 dDocent_Contig_9601 53 . G C 385.578 . AB=0.288889;ABP=20.4303;AC=4;AF=0.666667;AN=6;AO=17;CIGAR=1M6D7M1X10M;DP=49;DPB=45.4;DPRA=0;EPP=39.9253;EPPR=63.8115;GTI=0;LEN=1;MEANALT=1.33333;MQM=58.4118;MQMR=60;NS=3;NUMALT=2;ODDS=0;PAIRED=0.823529;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=598;QR=1095;RO=28;RPL=17;RPP=39.9253;RPPR=63.8115;RPR=0;RUN=1;SAF=17;SAP=39.9253;SAR=0;SRF=28;SRP=63.8115;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|1:32:21,7,4:21:827:7,4:245,155:-13.5382,0,-65.9348,-7.11197,-55.309,-73.9779 0|1:13:7,6,0:7:268:6,0:216,0:-15.8743,0,-20.57,-17.9815,-22.3762,-39.9874 1|1:4:0,4,0:0:0:4,0:137,0:-12.668,-1.20412,0,-12.668,-1.20412,-12.668 dDocent_Contig_9602 12 . G A 781.548 . AB=0.432836;ABP=5.63551;AC=3;AF=0.5;AN=6;AO=29;CIGAR=1X;DP=67;DPB=67;DPRA=0;EPP=65.983;EPPR=85.5263;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=1142;QR=1486;RO=38;RPL=0;RPP=65.983;RPPR=85.5263;RPR=29;RUN=1;SAF=29;SAP=65.983;SAR=0;SRF=38;SRP=85.5263;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:38:22,16:22:860:16:637:-46.2249,0,-66.2671 0/1:7:5,2:5:198:2:79:-5.39003,0,-16.0902 0/1:22:11,11:11:428:11:426:-32.0627,0,-32.2461 dDocent_Contig_9603 56 . G A 32.0222 . AB=0.285714;ABP=5.80219;AC=1;AF=0.25;AN=4;AO=2;CIGAR=1X;DP=14;DPB=14;DPRA=1;EPP=7.35324;EPPR=29.068;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=2;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=77;QR=482;RO=12;RPL=2;RPP=7.35324;RPPR=29.068;RPR=0;RUN=1;SAF=2;SAP=7.35324;SAR=0;SRF=12;SRP=29.068;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:7:7,0:7:280:0:0:0,-2.10721,-25.5712 0/1:7:5,2:5:202:2:77:-5.20193,0,-16.4543 ./.:.:.:.:.:.:.:. dDocent_Contig_9605 11 . A G 31.5944 . AB=0.166667;ABP=26.1727;AC=2;AF=0.333333;AN=6;AO=7;CIGAR=1X;DP=80;DPB=80;DPRA=0;EPP=18.2106;EPPR=161.528;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=247;QR=2621;RO=73;RPL=0;RPP=18.2106;RPPR=161.528;RPR=7;RUN=1;SAF=7;SAP=18.2106;SAR=0;SRF=73;SRP=161.528;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:56:53,3:53:1886:3:105:0,-7.06235,-160.177 0/1:7:6,1:6:226:1:34:-1.2917,0,-18.595 0/1:17:14,3:14:509:3:108:-4.9556,0,-41.0177 dDocent_Contig_9606 25 . T C 80.1573 . AB=0.125;ABP=81.1833;AC=1;AF=0.166667;AN=6;AO=8;CIGAR=1X;DP=82;DPB=82;DPRA=7.11111;EPP=20.3821;EPPR=163.699;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=3.46945e-18;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=316;QR=2624;RO=74;RPL=0;RPP=20.3821;RPPR=163.699;RPR=8;RUN=1;SAF=8;SAP=20.3821;SAR=0;SRF=74;SRP=163.699;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:64:56,8:56:1994:8:316:-9.53843,0,-160.448 0/0:3:3,0:3:109:0:0:0,-0.90309,-10.1677 0/0:15:15,0:15:521:0:0:0,-4.51545,-47.2144 dDocent_Contig_9607 28 . G A 71.8792 . AB=0.111111;ABP=109.412;AC=1;AF=0.166667;AN=6;AO=26;CIGAR=1X;DP=487;DPB=487;DPRA=0;EPP=59.4686;EPPR=1004.06;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=59.9848;NS=3;NUMALT=1;ODDS=1.38778e-17;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=1045;QR=18256;RO=461;RPL=0;RPP=59.4686;RPPR=1004.06;RPR=26;RUN=1;SAF=26;SAP=59.4686;SAR=0;SRF=461;SRP=1004.06;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:291:278,13:278:11005:13:517:0,-40.7228,-942.855 0/1:81:72,9:72:2853:9:367:-9.01183,0,-232.491 0/0:115:111,4:111:4398:4:161:0,-19.7436,-380.909 dDocent_Contig_9608 133 . A T 152.721 . AB=0.5;ABP=3.0103;AC=1;AF=0.25;AN=4;AO=8;CIGAR=1X;DP=40;DPB=40;DPRA=0;EPP=20.3821;EPPR=72.4974;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=2;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=306;QR=1198;RO=32;RPL=0;RPP=20.3821;RPPR=72.4974;RPR=8;RUN=1;SAF=0;SAP=20.3821;SAR=8;SRF=0;SRP=72.4974;SRR=32;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:28:26,2:26:967:2:78:0,-1.02537,-79.9366 ./.:.:.:.:.:.:.:. 0/1:12:6,6:6:231:6:228:-17.2719,0,-17.5455 dDocent_Contig_9609 7 . G A 81.7587 . AB=0.285714;ABP=8.59409;AC=1;AF=0.166667;AN=6;AO=4;CIGAR=1X;DP=48;DPB=48;DPRA=0.823529;EPP=11.6962;EPPR=96.3836;GTI=0;LEN=1;MEANALT=2;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=1.73472e-18;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=153;QR=1377;RO=43;RPL=0;RPP=11.6962;RPPR=96.3836;RPR=4;RUN=1;SAF=4;SAP=11.6962;SAR=0;SRF=43;SRP=96.3836;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:18:18,0:18:539:0:0:0,-5.41854,-48.7844 0/1:14:9,4:9:344:4:153:-9.99978,0,-27.1956 0/0:16:16,0:16:494:0:0:0,-4.81648,-44.7492 dDocent_Contig_9610 109 . A C 56.0752 . AB=0.428571;ABP=3.32051;AC=1;AF=0.166667;AN=6;AO=3;CIGAR=1X;DP=21;DPB=21;DPRA=1;EPP=9.52472;EPPR=42.0968;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=0;PAIREDR=0.611111;PAO=0;PQA=0;PQR=0;PRO=0;QA=99;QR=593;RO=18;RPL=0;RPP=9.52472;RPPR=42.0968;RPR=3;RUN=1;SAF=0;SAP=9.52472;SAR=3;SRF=0;SRP=42.0968;SRR=18;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:7:4,3:4:135:3:99:-7.13037,0,-10.3758 0/0:8:8,0:8:264:0:0:0,-2.40824,-24.0825 0/0:6:6,0:6:194:0:0:0,-1.80618,-17.7781 dDocent_Contig_9611 7 . G A 130.695 . AB=0.1875;ABP=43.7254;AC=1;AF=0.166667;AN=6;AO=9;CIGAR=1X;DP=69;DPB=69;DPRA=4.57143;EPP=22.5536;EPPR=131.127;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=59.9831;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=319;QR=1951;RO=59;RPL=0;RPP=22.5536;RPPR=131.127;RPR=9;RUN=1;SAF=9;SAP=22.5536;SAR=0;SRF=59;SRP=131.127;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:48:39,9:39:1316:9:319:-14.5924,0,-104.261 0/0:6:6,0:6:207:0:0:0,-1.80618,-18.9608 0/0:15:14,0:14:428:0:0:0,-4.21442,-38.6862 dDocent_Contig_9612 8 . T C 81.8257 . AB=0.571429;ABP=3.32051;AC=1;AF=0.166667;AN=6;AO=5;CIGAR=1X;DP=43;DPB=43;DPRA=3.08333;EPP=13.8677;EPPR=85.5263;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=0;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=162;QR=1231;RO=38;RPL=0;RPP=13.8677;RPPR=85.5263;RPR=5;RUN=1;SAF=5;SAP=13.8677;SAR=0;SRF=38;SRP=85.5263;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:30:29,1:29:937:1:31:0,-5.93145,-81.5061 0/1:7:3,4:3:107:4:131:-10.0065,0,-7.87272 0/0:6:6,0:6:187:0:0:0,-1.80618,-17.1313 dDocent_Contig_9614 7 . G A 49.064 . AB=0.214286;ABP=12.937;AC=1;AF=0.25;AN=4;AO=4;CIGAR=1X;DP=27;DPB=27;DPRA=0;EPP=11.6962;EPPR=52.9542;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=2;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=155;QR=674;RO=23;RPL=0;RPP=11.6962;RPPR=52.9542;RPR=4;RUN=1;SAF=4;SAP=11.6962;SAR=0;SRF=23;SRP=52.9542;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:14:11,3:11:309:3:116:-6.60328,0,-23.8635 ./.:.:.:.:.:.:.:. 0/0:13:12,1:12:365:1:39:0,-0.0168255,-29.2406 dDocent_Contig_9615 107 . N T 84.0079 . AB=0;ABP=0;AC=4;AF=1;AN=4;AO=7;CIGAR=1X;DP=7;DPB=7;DPRA=0;EPP=18.2106;EPPR=0;GTI=0;LEN=1;MEANALT=1;MQM=12.4286;MQMR=0;NS=2;NUMALT=1;ODDS=0;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=250;QR=0;RO=0;RPL=0;RPP=18.2106;RPPR=0;RPR=7;RUN=1;SAF=0;SAP=18.2106;SAR=7;SRF=0;SRP=0;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 1/1:6:0,6:0:0:6:214:-6.49739,-1.80618,0 ./.:.:.:.:.:.:.:. 1/1:1:0,1:0:0:1:36:-1.59579,-0.30103,0 dDocent_Contig_9616 7 . G A 523.519 . AB=0.284091;ABP=38.6422;AC=3;AF=0.5;AN=6;AO=25;CIGAR=1X;DP=88;DPB=88;DPRA=0;EPP=57.2971;EPPR=139.813;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=926;QR=2060;RO=63;RPL=0;RPP=57.2971;RPPR=139.813;RPR=25;RUN=1;SAF=25;SAP=57.2971;SAR=0;SRF=63;SRP=139.813;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:28:16,12:16:534:12:459:-33.2306,0,-39.9367 0/1:33:28,5:28:883:5:165:-5.23466,0,-69.8078 0/1:27:19,8:19:643:8:302:-19.4094,0,-50.0503 dDocent_Contig_9617 107 . N C 101.596 . AB=0;ABP=0;AC=4;AF=1;AN=4;AO=3;CIGAR=1X;DP=3;DPB=3;DPRA=0;EPP=9.52472;EPPR=0;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=0;NS=2;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=102;QR=0;RO=0;RPL=0;RPP=9.52472;RPPR=0;RPR=3;RUN=1;SAF=0;SAP=9.52472;SAR=3;SRF=0;SRP=0;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 1/1:1:0,1:0:0:1:34:-3.39891,-0.30103,0 ./.:.:.:.:.:.:.:. 1/1:2:0,2:0:0:2:68:-6.45793,-0.60206,0 dDocent_Contig_9619 7 . G A 31.7169 . AB=0.25;ABP=7.35324;AC=1;AF=0.166667;AN=6;AO=3;CIGAR=1X;DP=55;DPB=55;DPRA=0.416667;EPP=9.52472;EPPR=115.927;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=1.73472e-18;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=116;QR=1675;RO=52;RPL=0;RPP=9.52472;RPPR=115.927;RPR=3;RUN=1;SAF=3;SAP=9.52472;SAR=0;SRF=52;SRP=115.927;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:30:30,0:30:950:0:0:0,-9.0309,-85.7736 0/1:8:6,2:6:192:2:78:-4.99523,0,-15.1826 0/0:17:16,1:16:533:1:38:0,-1.32024,-44.4855 dDocent_Contig_9620 29 . T C 67.5613 . AB=0.2;ABP=18.6449;AC=1;AF=0.166667;AN=6;AO=4;CIGAR=1X;DP=94;DPB=94;DPRA=0.540541;EPP=11.6962;EPPR=198.443;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=0.966667;PAO=0;PQA=0;PQR=0;PRO=0;QA=158;QR=3490;RO=90;RPL=0;RPP=11.6962;RPPR=198.443;RPR=4;RUN=1;SAF=4;SAP=11.6962;SAR=0;SRF=90;SRP=198.443;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:72:72,0:72:2784:0:0:0,-21.6742,-250.689 0/0:2:2,0:2:78:0:0:0,-0.60206,-7.40278 0/1:20:16,4:16:628:4:158:-8.57967,0,-50.8283 dDocent_Contig_9621 8 . T A 237.196 . AB=0.216216;ABP=54.7735;AC=3;AF=0.5;AN=6;AO=16;CIGAR=1X2M1X;DP=74;DPB=74;DPRA=0;EPP=37.7539;EPPR=128.956;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=561;QR=1971;RO=58;RPL=0;RPP=37.7539;RPPR=128.956;RPR=16;RUN=1;SAF=16;SAP=37.7539;SAR=0;SRF=58;SRP=128.956;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|1:35:29,6:29:1004:6:203:-8.06419,0,-80.1224 0|1:21:16,5:16:508:5:181:-10.3208,0,-39.6949 0|1:18:13,5:13:459:5:177:-10.8574,0,-36.2253 dDocent_Contig_9622 95 . G C 425.632 . AB=0.344262;ABP=15.8611;AC=3;AF=0.5;AN=6;AO=21;CIGAR=1X;DP=61;DPB=61;DPRA=0;EPP=48.6112;EPPR=89.8692;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=727;QR=1371;RO=40;RPL=21;RPP=48.6112;RPPR=89.8692;RPR=0;RUN=1;SAF=21;SAP=48.6112;SAR=0;SRF=40;SRP=89.8692;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:38:24,14:24:812:14:483:-32.3572,0,-61.9491 0/1:10:8,2:8:282:2:70:-3.6371,0,-22.7101 0/1:13:8,5:8:277:5:174:-12.0884,0,-21.3531 dDocent_Contig_9623 12 . G A 127.853 . AB=0.205128;ABP=32.4644;AC=2;AF=0.333333;AN=6;AO=8;CIGAR=1X;DP=54;DPB=54;DPRA=1.3;EPP=20.3821;EPPR=102.898;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=0.869565;PAO=0;PQA=0;PQR=0;PRO=0;QA=303;QR=1816;RO=46;RPL=0;RPP=20.3821;RPPR=102.898;RPR=8;RUN=1;SAF=8;SAP=20.3821;SAR=0;SRF=46;SRP=102.898;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:35:28,7:28:1105:7:262:-13.3995,0,-89.2006 0/1:4:3,1:3:112:1:41:-2.89045,0,-9.24125 0/0:15:15,0:15:599:0:0:0,-4.51545,-54.2489 dDocent_Contig_9624 105 . N T 192.408 . AB=0;ABP=0;AC=4;AF=1;AN=4;AO=6;CIGAR=3X;DP=6;DPB=6;DPRA=0;EPP=16.0391;EPPR=0;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=0;NS=2;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=203;QR=0;RO=0;RPL=0;RPP=16.0391;RPPR=0;RPR=6;RUN=1;SAF=0;SAP=16.0391;SAR=6;SRF=0;SRP=0;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 1|1:4:0,4:0:0:4:136:-12.5759,-1.20412,0 1|1:2:0,2:0:0:2:67:-6.36314,-0.60206,0 .:.:.:.:.:.:.:. dDocent_Contig_9626 20 . A G 39.0097 . AB=0.148148;ABP=32.0437;AC=2;AF=0.333333;AN=6;AO=4;CIGAR=1X;DP=64;DPB=64;DPRA=0.364865;EPP=11.6962;EPPR=133.299;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=150;QR=2353;RO=60;RPL=0;RPP=11.6962;RPPR=133.299;RPR=4;RUN=1;SAF=4;SAP=11.6962;SAR=0;SRF=60;SRP=133.299;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:37:37,0:37:1473:0:0:0,-11.1381,-132.821 0/1:11:10,1:10:381:1:37:-0.386499,0,-31.3244 0/1:16:13,3:13:499:3:113:-5.72131,0,-40.4307 dDocent_Contig_9628 7 . G A 2246.08 . AB=0.666667;ABP=30.5156;AC=3;AF=0.5;AN=6;AO=76;CIGAR=1X;DP=114;DPB=114;DPRA=0;EPP=168.042;EPPR=81.1833;GTI=0;LEN=1;MEANALT=1.66667;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=2924;QR=1152;RO=36;RPL=0;RPP=168.042;RPPR=81.1833;RPR=76;RUN=1;SAF=76;SAP=168.042;SAR=0;SRF=36;SRP=81.1833;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:71:21,49:21:652:49:1892:-149.336,0,-37.7637 0/1:20:4,16:4:153:16:615:-49.6688,0,-8.12101 0/1:23:11,11:11:347:11:417:-31.1255,0,-24.7788 dDocent_Contig_9630 40 . C G 103.53 . AB=0.206897;ABP=24.6501;AC=1;AF=0.166667;AN=6;AO=6;CIGAR=1X;DP=49;DPB=49;DPRA=2.9;EPP=16.0391;EPPR=87.8997;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=59.6279;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=0.906977;PAO=0;PQA=0;PQR=0;PRO=0;QA=225;QR=1723;RO=43;RPL=0;RPP=16.0391;RPPR=96.3836;RPR=6;RUN=1;SAF=6;SAP=16.0391;SAR=0;SRF=42;SRP=87.8997;SRR=1;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:29:23,6:23:929:6:225:-11.8751,0,-75.1839 0/0:1:1,0:1:37:0:0:0,-0.30103,-3.69783 0/0:19:19,0:19:757:0:0:0,-5.71957,-68.4311 dDocent_Contig_9631 55 . C T 71.5591 . AB=0.2;ABP=18.6449;AC=1;AF=0.25;AN=4;AO=4;CIGAR=1X;DP=32;DPB=32;DPRA=1.66667;EPP=11.6962;EPPR=63.8115;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=2;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=161;QR=1138;RO=28;RPL=4;RPP=11.6962;RPPR=63.8115;RPR=0;RUN=1;SAF=4;SAP=11.6962;SAR=0;SRF=28;SRP=63.8115;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:20:16,4:16:650:4:161:-8.85488,0,-52.8123 ./.:.:.:.:.:.:.:. 0/0:12:12,0:12:488:0:0:0,-3.61236,-44.2709 dDocent_Contig_9632 98 . N A 143.767 . AB=0;ABP=0;AC=6;AF=1;AN=6;AO=5;CIGAR=1X;DP=5;DPB=5;DPRA=0;EPP=13.8677;EPPR=0;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=0;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=145;QR=0;RO=0;RPL=5;RPP=13.8677;RPPR=0;RPR=0;RUN=1;SAF=5;SAP=13.8677;SAR=0;SRF=0;SRP=0;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 1/1:2:0,2:0:0:2:57:-5.41422,-0.60206,0 1/1:2:0,2:0:0:2:63:-5.98364,-0.60206,0 1/1:1:0,1:0:0:1:25:-2.49986,-0.30103,0 dDocent_Contig_9633 49 . C T 272.463 . AB=0.5;ABP=3.0103;AC=3;AF=0.5;AN=6;AO=8;CIGAR=2X3M1X3M;DP=32;DPB=32;DPRA=7.5;EPP=20.3821;EPPR=48.6112;GTI=0;LEN=1;MEANALT=1.5;MQM=60;MQMR=60;NS=3;NUMALT=2;ODDS=0;PAIRED=0;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=317;QR=814;RO=21;RPL=8;RPP=20.3821;RPPR=48.6112;RPR=0;RUN=1;SAF=8;SAP=20.3821;SAR=0;SRF=21;SRP=48.6112;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|1:14:7,0,7:7:276:0,7:0,278:-21.1765,-23.2837,-45.9907,0,-23.1023,-20.9951 1|1:2:0,2,0:0:0:2,0:80,0:-7.59179,-0.60206,0,-7.59179,-0.60206,-7.59179 0|0:16:14,0,1:14:538:0,1:0,39:0,-4.21442,-48.3646,-1.0135,-45.1584,-44.8574 dDocent_Contig_9634 32 . A G 162.761 . AB=0.32;ABP=10.0459;AC=3;AF=0.5;AN=6;AO=8;CIGAR=1X;DP=25;DPB=25;DPRA=0;EPP=20.3821;EPPR=39.9253;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=0.875;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=313;QR=690;RO=17;RPL=0;RPP=20.3821;RPPR=39.9253;RPR=8;RUN=1;SAF=8;SAP=20.3821;SAR=0;SRF=17;SRP=39.9253;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:2:1,1:1:41:1:38:-3.19521,0,-3.49251 0/1:12:7,5:7:286:5:195:-14.3089,0,-22.5025 0/1:11:9,2:9:363:2:80:-4.28046,0,-29.7225 dDocent_Contig_9635 119 . C G 633.993 . AB=0.369048;ABP=15.5221;AC=3;AF=0.5;AN=6;AO=31;CIGAR=1X;DP=84;DPB=84;DPRA=0;EPP=70.3259;EPPR=118.098;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=6.93889e-18;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=1036;QR=1877;RO=53;RPL=0;RPP=70.3259;RPPR=118.098;RPR=31;RUN=1;SAF=0;SAP=70.3259;SAR=31;SRF=0;SRP=118.098;SRR=53;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:49:33,16:33:1164:16:512:-31.6314,0,-90.3159 0/1:12:9,3:9:321:3:100:-5.71776,0,-25.6211 0/1:23:11,12:11:392:12:424:-31.5729,0,-28.6966 dDocent_Contig_9636 31 . A T 75.7993 . AB=0;ABP=0;AC=2;AF=0.333333;AN=6;AO=3;CIGAR=1X;DP=39;DPB=39;DPRA=1;EPP=9.52472;EPPR=81.1833;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=4.33681e-19;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=110;QR=1421;RO=36;RPL=0;RPP=9.52472;RPPR=81.1833;RPR=3;RUN=1;SAF=3;SAP=9.52472;SAR=0;SRF=36;SRP=81.1833;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:24:23,1:23:899:1:32:0,-4.02541,-78.0179 1/1:2:0,2:0:0:2:78:-7.40347,-0.60206,0 0/0:13:13,0:13:522:0:0:0,-3.91339,-47.3278 dDocent_Contig_9637 56 . T C 95.3485 . AB=0.166667;ABP=37.7539;AC=2;AF=0.333333;AN=6;AO=6;CIGAR=1X;DP=45;DPB=45;DPRA=2;EPP=16.0391;EPPR=87.6977;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=243;QR=1556;RO=39;RPL=6;RPP=16.0391;RPPR=87.6977;RPR=0;RUN=1;SAF=6;SAP=16.0391;SAR=0;SRF=39;SRP=87.6977;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:24:22,2:22:889:2:81:-0.461014,0,-73.0906 0/1:12:8,4:8:304:4:162:-11.3546,0,-24.0999 0/0:9:9,0:9:363:0:0:0,-2.70927,-33.0343 dDocent_Contig_9638 104 . N C 87.3346 . AB=0;ABP=0;AC=6;AF=1;AN=6;AO=15;CIGAR=4X;DP=15;DPB=15;DPRA=0;EPP=35.5824;EPPR=0;GTI=0;LEN=1;MEANALT=1;MQM=5.86667;MQMR=0;NS=3;NUMALT=1;ODDS=1.69407e-21;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=490;QR=0;RO=0;RPL=0;RPP=35.5824;RPPR=0;RPR=15;RUN=1;SAF=0;SAP=35.5824;SAR=15;SRF=0;SRP=0;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 1|1:13:0,13:0:0:13:421:-6.87993,-3.91339,0 1|1:1:0,1:0:0:1:34:-0.599485,-0.30103,0 1|1:1:0,1:0:0:1:35:-0.599591,-0.30103,0 dDocent_Contig_9639 16 . C T 178.265 . AB=0.166667;ABP=84.0786;AC=3;AF=0.5;AN=6;AO=14;CIGAR=2X;DP=84;DPB=84;DPRA=0;EPP=33.4109;EPPR=155.013;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=528;QR=2793;RO=70;RPL=0;RPP=33.4109;RPPR=155.013;RPR=14;RUN=1;SAF=14;SAP=33.4109;SAR=0;SRF=70;SRP=155.013;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|1:65:58,7:58:2306:7:264:-4.55374,0,-188.135 0|1:4:1,3:1:41:3:112:-9.24261,0,-2.89045 0|1:15:11,4:11:446:4:152:-9.53444,0,-35.9802 dDocent_Contig_9640 75 . T C 86.6718 . AB=0.358974;ABP=9.74743;AC=3;AF=0.5;AN=6;AO=14;CIGAR=1X;DP=39;DPB=39;DPRA=0;EPP=33.4109;EPPR=57.2971;GTI=0;LEN=1;MEANALT=1;MQM=20.6429;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=0;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=524;QR=841;RO=25;RPL=14;RPP=33.4109;RPPR=57.2971;RPR=0;RUN=1;SAF=14;SAP=33.4109;SAR=0;SRF=25;SRP=57.2971;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:25:17,8:17:580:8:285:-6.15287,0,-44.9966 0/1:3:1,2:1:35:2:80:-3.33136,0,-2.59554 0/1:11:7,4:7:226:4:159:-4.66408,0,-17.345 dDocent_Contig_9641 19 . G A 1263.82 . AB=0.102041;ABP=137.819;AC=0;AF=0;AN=6;AO=10;CIGAR=10M1X2M;DP=124;DPB=133.923;DPRA=0;EPP=24.725;EPPR=50.7827;GTI=0;LEN=1;MEANALT=7.5;MQM=60;MQMR=60;NS=3;NUMALT=7;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=402;QR=822;RO=22;RPL=0;RPP=24.725;RPPR=50.7827;RPR=10;RUN=1;SAF=10;SAP=24.725;SAR=0;SRF=22;SRP=50.7827;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|0:70:12,0,17,3,1,6,18,8:12:447:0,17,3,1,6,18,8:0,656,118,38,198,660,321:-67.6071,-71.2195,-107.808,-17.3443,-53.9337,-48.8162,-61.5117,-98.1004,-44.2255,-97.1973,-68.1029,-104.691,-50.817,-94.9838,-104.39,-55.2205,-91.8081,-37.9348,-82.1005,-88.6915,-90.0019,-17.2873,-53.8747,0,-44.167,-50.7582,-37.8768,-48.4562,-44.7674,-81.3567,-27.4805,-71.6488,-78.2401,-65.357,-27.4226,-78.9485 0|0:26:6,4,0,0,6,8,2,0:6:232:4,0,0,6,8,2,0:152,0,0,226,252,71,0:-18.4316,-7.76502,-25.6281,-20.2378,-26.8322,-39.3014,-20.2378,-26.8322,-39.3014,-39.3014,-1.70788,-8.30544,-20.7774,-20.7774,-18.9712,0,-6.59367,-19.0595,-19.0595,-0.541653,-16.6513,-14.4525,-21.0475,-33.5171,-33.5171,-14.9925,-13.2777,-32.915,-20.2378,-26.8322,-39.3014,-39.3014,-20.7774,-19.0595,-33.5171,-39.3014 0|0:28:4,1,1,3,1,0,15,2:4:143:1,1,3,1,0,15,2:37,38,115,31,0,573,81:-45.8234,-44.0005,-55.3532,-43.9106,-52.5373,-55.2633,-37.5868,-46.2135,-46.1236,-48.3376,-44.5417,-53.168,-53.0781,-46.7545,-55.8939,-47.0275,-55.6542,-55.5644,-49.2407,-56.195,-58.6813,0,-8.62893,-8.5386,-2.20956,-9.17245,-11.6573,-7.14184,-40.3452,-48.9722,-48.8823,-42.5582,-49.5131,-51.9994,-4.96887,-51.3973 dDocent_Contig_9642 26 . C T 65.0401 . AB=0.157895;ABP=41.6397;AC=3;AF=0.5;AN=6;AO=6;CIGAR=8M1X4M;DP=38;DPB=37.5385;DPRA=0;EPP=16.0391;EPPR=68.1545;GTI=0;LEN=1;MEANALT=1.33333;MQM=60;MQMR=60;NS=3;NUMALT=2;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=243;QR=1137;RO=30;RPL=0;RPP=16.0391;RPPR=68.1545;RPR=6;RUN=1;SAF=6;SAP=16.0391;SAR=0;SRF=30;SRP=68.1545;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|1:7:6,0,1:6:220:0,1:0,41:-1.98736,-3.79354,-21.7341,0,-18.3438,-18.0428 0|1:13:10,0,3:10:372:0,3:0,121:-7.36681,-10.3771,-40.7927,0,-30.8113,-29.9082 0|1:18:14,2,2:14:545:2,2:74,81:-2.48213,-0.660873,-44.8357,0,-38.7566,-44.2052 dDocent_Contig_9643 46 . T G 385.773 . AB=0.237288;ABP=38.3795;AC=1;AF=0.166667;AN=6;AO=14;CIGAR=3M4D2M1X;DP=69;DPB=59;DPRA=2.95;EPP=33.4109;EPPR=98.5551;GTI=0;LEN=1;MEANALT=2.5;MQM=60;MQMR=60;NS=3;NUMALT=3;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=558;QR=1744;RO=44;RPL=0;RPP=33.4109;RPPR=98.5551;RPR=14;RUN=1;SAF=14;SAP=33.4109;SAR=0;SRF=44;SRP=98.5551;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|1:49:31,0,13,5:31:1236:0,13,5:0,517,196:-33.2382,-42.5701,-144.362,0,-101.796,-97.8825,-26.4539,-128.245,-85.6791,-126.74 0|0:10:10,0,0,0:10:388:0,0,0:0,0,0:0,-3.0103,-35.2751,-3.0103,-35.2751,-35.2751,-3.0103,-35.2751,-35.2751,-35.2751 0|0:10:3,3,1,3:3:120:3,1,3:117,41,116:-8.71173,0,-8.98535,-6.22767,-6.502,-15.8158,-0.0907409,-0.367569,-6.59193,-9.07504 dDocent_Contig_9644 31 . T C 1199.09 . AB=0.191919;ABP=84.627;AC=0;AF=0;AN=6;AO=19;CIGAR=1X1M1X;DP=99;DPB=99;DPRA=0;EPP=44.2683;EPPR=85.5263;GTI=0;LEN=1;MEANALT=2;MQM=60;MQMR=60;NS=3;NUMALT=2;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=744;QR=1493;RO=38;RPL=0;RPP=44.2683;RPPR=85.5263;RPR=19;RUN=1;SAF=19;SAP=44.2683;SAR=0;SRF=38;SRP=85.5263;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|0:50:23,12,15:23:894:12,15:483,579:-40.5996,-7.70796,-77.5479,0,-33.6289,-68.9262 0|0:31:10,5,16:10:395:5,16:181,638:-49.5537,-37.8032,-68.8,0,-17.7668,-27.7088 0|0:18:5,2,11:5:204:2,11:80,446:-35.2782,-30.194,-46.4242,0,-10.2492,-13.5257 dDocent_Contig_9645 13 . C T 145.357 . AB=0.225806;ABP=23.254;AC=1;AF=0.166667;AN=6;AO=7;CIGAR=1X1M1X;DP=47;DPB=47;DPRA=3.875;EPP=18.2106;EPPR=89.8692;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=0;PAIREDR=0.575;PAO=0;PQA=0;PQR=0;PRO=0;QA=278;QR=1596;RO=40;RPL=0;RPP=18.2106;RPPR=89.8692;RPR=7;RUN=1;SAF=7;SAP=18.2106;SAR=0;SRF=40;SRP=89.8692;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|1:31:24,7:24:961:7:278:-16.0586,0,-77.458 0|0:10:10,0:10:402:0:0:0,-3.0103,-36.5399 0|0:6:6,0:6:233:0:0:0,-1.80618,-21.3387 dDocent_Contig_9646 11 . C G 345.309 . AB=0.34375;ABP=9.79615;AC=1;AF=0.166667;AN=6;AO=11;CIGAR=3M2X1M1X2M1I4M;DP=34;DPB=35.4615;DPRA=8;EPP=26.8965;EPPR=35.5824;GTI=0;LEN=1;MEANALT=2;MQM=60;MQMR=60;NS=3;NUMALT=2;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=420;QR=568;RO=15;RPL=0;RPP=26.8965;RPPR=35.5824;RPR=11;RUN=1;SAF=11;SAP=26.8965;SAR=0;SRF=15;SRP=35.5824;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|0:16:9,3,4:9:345:3,4:118,138:-8.47435,-1.45633,-28.8941,0,-18.5979,-27.1029 0|0:2:0,0,2:0:0:0,2:0,69:-6.55228,-6.55228,-6.55228,-0.60206,-0.60206,0 0|1:16:6,8,2:6:223:8,2:302,56:-23.0214,0,-15.9082,-20.4111,-13.9033,-38.0544 dDocent_Contig_9648 7 . G A 477.183 . AB=0.425;ABP=4.96463;AC=4;AF=0.666667;AN=6;AO=18;CIGAR=1X;DP=41;DPB=41;DPRA=0;EPP=42.0968;EPPR=50.7827;GTI=0;LEN=1;MEANALT=1.33333;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=689;QR=711;RO=22;RPL=0;RPP=42.0968;RPPR=50.7827;RPR=18;RUN=1;SAF=18;SAP=42.0968;SAR=0;SRF=22;SRP=50.7827;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:26:15,10:15:495:10:380:-26.8928,0,-37.2021 1/1:1:0,1:0:0:1:39:-3.89656,-0.30103,0 0/1:14:7,7:7:216:7:270:-20.4511,0,-15.5265 dDocent_Contig_9649 32 . T A 194.009 . AB=0.291667;ABP=12.0581;AC=4;AF=0.666667;AN=6;AO=8;CIGAR=1X;DP=25;DPB=25;DPRA=0;EPP=20.3821;EPPR=39.9253;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=322;QR=683;RO=17;RPL=0;RPP=20.3821;RPPR=39.9253;RPR=8;RUN=1;SAF=8;SAP=20.3821;SAR=0;SRF=17;SRP=39.9253;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:8:5,3:5:201:3:118:-8.59396,0,-16.0627 1/1:1:0,1:0:0:1:40:-3.99568,-0.30103,0 0/1:16:12,4:12:482:4:164:-10.3334,0,-38.9137 dDocent_Contig_9650 72 . G A 812.32 . AB=0.311111;ABP=44.8473;AC=3;AF=0.5;AN=6;AO=42;CIGAR=1X2M1X;DP=135;DPB=135;DPRA=0;EPP=94.2121;EPPR=204.957;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=1386;QR=2822;RO=93;RPL=42;RPP=94.2121;RPPR=204.957;RPR=0;RUN=1;SAF=42;SAP=94.2121;SAR=0;SRF=93;SRP=204.957;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|1:100:62,38:62:1880:38:1250:-82.6938,0,-139.367 0|1:6:5,1:5:148:1:34:-1.59273,0,-11.8073 0|1:29:26,3:26:794:3:102:-0.787081,0,-63.0229 dDocent_Contig_9651 19 . T A 936.778 . AB=0.205128;ABP=32.4644;AC=4;AF=0.666667;AN=6;AO=31;CIGAR=1X;DP=63;DPB=63;DPRA=0;EPP=70.3259;EPPR=72.4974;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=1244;QR=1291;RO=32;RPL=0;RPP=70.3259;RPPR=72.4974;RPR=31;RUN=1;SAF=31;SAP=70.3259;SAR=0;SRF=32;SRP=72.4974;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:26:21,5:21:842:5:198:-10.3695,0,-68.2637 1/1:24:1,23:1:41:23:923:-79.2798,-3.13015,0 0/1:13:10,3:10:408:3:123:-7.5514,0,-33.1672 dDocent_Contig_9653 50 . T A 201.378 . AB=0.203704;ABP=44.1879;AC=2;AF=0.333333;AN=6;AO=11;CIGAR=1M1I1M1X;DP=60;DPB=63.6667;DPRA=4.5;EPP=26.8965;EPPR=109.412;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=434;QR=1946;RO=49;RPL=11;RPP=26.8965;RPPR=109.412;RPR=0;RUN=1;SAF=11;SAP=26.8965;SAR=0;SRF=49;SRP=109.412;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|1:36:27,9:27:1071:9:355:-21.4754,0,-85.8423 0|0:6:6,0:6:238:0:0:0,-1.80618,-21.7942 0|1:18:16,2:16:637:2:79:-2.0787,0,-52.2469 dDocent_Contig_9654 7 . G A 347.092 . AB=0.306122;ABP=19.0083;AC=2;AF=0.333333;AN=6;AO=16;CIGAR=1X;DP=65;DPB=65;DPRA=0;EPP=37.7539;EPPR=105.07;GTI=0;LEN=1;MEANALT=1.66667;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=606;QR=1521;RO=47;RPL=0;RPP=37.7539;RPPR=105.07;RPR=16;RUN=1;SAF=16;SAP=37.7539;SAR=0;SRF=47;SRP=105.07;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:39:24,14:24:762:14:528:-36.2208,0,-57.2315 0/1:10:9,1:9:301:1:39:-0.886264,0,-24.3957 0/0:16:14,1:14:458:1:39:0,-0.868713,-37.7551 dDocent_Contig_9655 21 . G A 172.943 . AB=0.545455;ABP=3.20771;AC=1;AF=0.166667;AN=6;AO=6;CIGAR=1X;DP=22;DPB=22;DPRA=2;EPP=16.0391;EPPR=37.7539;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=245;QR=627;RO=16;RPL=0;RPP=16.0391;RPPR=37.7539;RPR=6;RUN=1;SAF=6;SAP=16.0391;SAR=0;SRF=16;SRP=37.7539;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:6:6,0:6:243:0:0:0,-1.80618,-22.2476 0/1:11:5,6:5:180:6:245:-19.1181,0,-13.237 0/0:5:5,0:5:204:0:0:0,-1.50515,-18.744 dDocent_Contig_9656 11 . C A 200.121 . AB=0.25;ABP=22.5536;AC=1;AF=0.166667;AN=6;AO=11;CIGAR=1X;DP=85;DPB=85;DPRA=1.73684;EPP=26.8965;EPPR=163.699;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=436;QR=2804;RO=74;RPL=0;RPP=26.8965;RPPR=163.699;RPR=11;RUN=1;SAF=11;SAP=26.8965;SAR=0;SRF=74;SRP=163.699;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:19:19,0:19:739:0:0:0,-5.71957,-66.8357 0/1:36:27,9:27:1054:9:359:-21.836,0,-84.3174 0/0:30:28,2:28:1011:2:77:0,-1.72207,-83.9705 dDocent_Contig_9657 97 . G A 1014.23 . AB=0.494253;ABP=3.03526;AC=2;AF=0.5;AN=4;AO=43;CIGAR=1X;DP=87;DPB=87;DPRA=0;EPP=96.3836;EPPR=98.5551;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=2;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=1452;QR=1472;RO=44;RPL=43;RPP=96.3836;RPPR=98.5551;RPR=0;RUN=1;SAF=43;SAP=96.3836;SAR=0;SRF=44;SRP=98.5551;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:48:29,19:29:977:19:656:-44.9137,0,-73.7879 ./.:.:.:.:.:.:.:. 0/1:39:15,24:15:495:24:796:-60.2082,0,-33.1261 dDocent_Contig_9660 42 . G T 511.709 . AB=0.196721;ABP=51.7438;AC=1;AF=0.166667;AN=6;AO=12;CIGAR=1M1D5M1X;DP=66;DPB=62.75;DPRA=6.1;EPP=29.068;EPPR=89.8692;GTI=0;LEN=1;MEANALT=2.5;MQM=60;MQMR=60;NS=3;NUMALT=2;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=477;QR=1560;RO=40;RPL=0;RPP=29.068;RPPR=89.8692;RPR=12;RUN=1;SAF=12;SAP=29.068;SAR=0;SRF=40;SRP=89.8692;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|0:49:32,4,12:32:1260:4,12:156,471:-29.1461,-25.9509,-128.417,0,-90.8836,-100.095 0|0:5:5,0,0:5:180:0,0:0,0:0,-1.50515,-16.5496,-1.50515,-16.5496,-16.5496 0|1:12:3,8,1:3:120:8,1:321,40:-25.5477,0,-7.477,-23.1558,-6.59016,-32.7397 dDocent_Contig_9661 87 . C A 92.2263 . AB=0.571429;ABP=3.32051;AC=1;AF=0.166667;AN=6;AO=4;CIGAR=1X;DP=20;DPB=20;DPRA=1.07692;EPP=11.6962;EPPR=37.7539;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=139;QR=549;RO=16;RPL=4;RPP=11.6962;RPPR=37.7539;RPR=0;RUN=1;SAF=4;SAP=11.6962;SAR=0;SRF=16;SRP=37.7539;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:7:3,4:3:103:4:139:-10.7455,0,-7.50276 0/0:7:7,0:7:239:0:0:0,-2.10721,-21.8436 0/0:6:6,0:6:207:0:0:0,-1.80618,-18.9681 dDocent_Contig_9663 8 . T C 2403.41 . AB=0.554054;ABP=4.88833;AC=4;AF=0.666667;AN=6;AO=88;CIGAR=1X7M;DP=124;DPB=124.5;DPRA=0;EPP=194.1;EPPR=70.3259;GTI=0;LEN=1;MEANALT=2;MQM=60;MQMR=60;NS=3;NUMALT=2;ODDS=6.93889e-18;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=3018;QR=1155;RO=31;RPL=0;RPP=194.1;RPPR=70.3259;RPR=88;RUN=1;SAF=88;SAP=194.1;SAR=0;SRF=31;SRP=70.3259;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|1:36:21,3,11:21:783:3,11:116,375:-24.1154,-20.8958,-84.1219,0,-54.6118,-60.8318 1|1:50:2,1,47:2:76:1,47:39,1703:-146.312,-143.707,-149.64,-7.92214,-10.9392,0 0|1:38:8,0,30:8:296:0,30:0,940:-73.4374,-75.8457,-100.071,0,-24.5834,-15.5525 dDocent_Contig_9664 26 . T C 90.3121 . AB=0.285714;ABP=8.59409;AC=1;AF=0.166667;AN=6;AO=4;CIGAR=1X;DP=40;DPB=40;DPRA=1.07692;EPP=11.6962;EPPR=79.0118;GTI=0;LEN=1;MEANALT=2;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=161;QR=1416;RO=35;RPL=0;RPP=11.6962;RPPR=79.0118;RPR=4;RUN=1;SAF=4;SAP=11.6962;SAR=0;SRF=35;SRP=79.0118;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:14:9,4:9:362:4:161:-10.5539,0,-28.621 0/0:3:3,0:3:123:0:0:0,-0.90309,-11.4648 0/0:23:23,0:23:931:0:0:0,-6.92369,-84.0916 dDocent_Contig_9665 24 . G A 2336.02 . AB=0.266376;ABP=111.574;AC=3;AF=0.5;AN=6;AO=61;CIGAR=1X5M;DP=229;DPB=229;DPRA=0;EPP=135.47;EPPR=204.957;GTI=0;LEN=1;MEANALT=3.33333;MQM=60;MQMR=60;NS=3;NUMALT=3;ODDS=0;PAIRED=0.983607;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=2403;QR=3547;RO=93;RPL=0;RPP=135.47;RPPR=204.957;RPR=61;RUN=1;SAF=61;SAP=135.47;SAR=0;SRF=93;SRP=204.957;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|1:150:67,50,0,32:67:2552:50,0,32:1936,0,1258:-138.852,0,-194.268,-159.021,-209.319,-368.345,-55.5495,-105.846,-264.873,-255.24 0|1:19:4,8,2,4:4:156:8,2,4:318,76,151:-25.0108,0,-10.4348,-19.9801,-6.60457,-32.2068,-13.8356,-0.454422,-20.4313,-25.4614 0|1:60:22,10,3,25:22:839:10,3,25:390,117,994:-75.2136,-49.7808,-115.592,-72.2192,-108.985,-140.139,0,-36.7635,-59.2048,-61.297 dDocent_Contig_9667 142 . G C 1655.28 . AB=0.56383;ABP=6.33681;AC=4;AF=0.666667;AN=6;AO=57;CIGAR=1X;DP=98;DPB=98;DPRA=0;EPP=126.784;EPPR=92.0407;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=2182;QR=1603;RO=41;RPL=0;RPP=126.784;RPPR=92.0407;RPR=57;RUN=1;SAF=0;SAP=126.784;SAR=57;SRF=0;SRP=92.0407;SRR=41;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:67:23,44:23:910:44:1688:-131.994,0,-62.0424 1/1:4:0,4:0:0:4:158:-14.6005,-1.20412,0 0/1:27:18,9:18:693:9:336:-22.4567,0,-54.5703 dDocent_Contig_9668 33 . A G 705.587 . AB=0.462963;ABP=3.6537;AC=2;AF=0.333333;AN=6;AO=25;CIGAR=1X;DP=75;DPB=75;DPRA=1.28571;EPP=57.2971;EPPR=111.584;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=0.96;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=996;QR=2015;RO=50;RPL=0;RPP=57.2971;RPPR=111.584;RPR=25;RUN=1;SAF=25;SAP=57.2971;SAR=0;SRF=50;SRP=111.584;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:21:21,0:21:842:0:0:0,-6.32163,-76.0921 0/1:14:9,5:9:364:5:201:-14.2561,0,-28.91 0/1:40:20,20:20:809:20:795:-59.8255,0,-61.0858 dDocent_Contig_9669 31 . T C 198.183 . AB=0.380952;ABP=5.59539;AC=2;AF=0.333333;AN=6;AO=9;CIGAR=1X;DP=50;DPB=50;DPRA=0;EPP=22.5536;EPPR=83.5666;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=58.5366;NS=3;NUMALT=1;ODDS=0;PAIRED=0;PAIREDR=0.95122;PAO=0;PQA=0;PQR=0;PRO=0;QA=362;QR=1566;RO=41;RPL=0;RPP=22.5536;RPPR=92.0407;RPR=9;RUN=1;SAF=9;SAP=22.5536;SAR=0;SRF=40;SRP=83.5666;SRR=1;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:29:28,1:28:1088:1:41:0,-4.6353,-93.6367 0/1:9:3,6:3:113:6:240:-19.2665,0,-7.83027 0/1:12:10,2:10:365:2:81:-4.07337,0,-28.1983 dDocent_Contig_9672 196 . T A 38.6355 . AB=0.125;ABP=61.6401;AC=2;AF=0.333333;AN=6;AO=6;CIGAR=1X;DP=60;DPB=60;DPRA=2;EPP=16.0391;EPPR=120.27;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=0.981481;PAO=0;PQA=0;PQR=0;PRO=0;QA=234;QR=2057;RO=54;RPL=6;RPP=16.0391;RPPR=120.27;RPR=0;RUN=1;SAF=0;SAP=16.0391;SAR=6;SRF=0;SRP=120.27;SRR=54;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:45:40,5:40:1537:5:195:-4.37785,0,-125.055 0/1:3:2,1:2:78:1:39:-2.99347,0,-6.50038 0/0:12:12,0:12:442:0:0:0,-3.61236,-40.1153 dDocent_Contig_9675 72 . T C 38.6726 . AB=0.333333;ABP=4.45795;AC=1;AF=0.166667;AN=6;AO=2;CIGAR=1X;DP=21;DPB=21;DPRA=0.8;EPP=7.35324;EPPR=44.2683;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=79;QR=713;RO=19;RPL=2;RPP=7.35324;RPPR=44.2683;RPR=0;RUN=1;SAF=2;SAP=7.35324;SAR=0;SRF=19;SRP=44.2683;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:10:10,0:10:373:0:0:0,-3.0103,-33.9181 0/1:6:4,2:4:151:2:79:-5.69106,0,-12.1512 0/0:5:5,0:5:189:0:0:0,-1.50515,-17.3753 dDocent_Contig_9676 144 . T A 970.151 . AB=0.539683;ABP=3.872;AC=3;AF=0.5;AN=6;AO=34;CIGAR=1X;DP=63;DPB=63;DPRA=0;EPP=76.8404;EPPR=63.8115;GTI=0;LEN=1;MEANALT=1.33333;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=1336;QR=1133;RO=28;RPL=0;RPP=76.8404;RPPR=63.8115;RPR=34;RUN=1;SAF=0;SAP=76.8404;SAR=34;SRF=0;SRP=63.8115;SRR=28;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:42:14,27:14:565:27:1062:-83.4416,0,-38.7581 0/1:6:3,3:3:122:3:120:-9.38151,0,-9.56631 0/1:15:11,4:11:446:4:154:-9.71487,0,-35.9807 dDocent_Contig_9677 11 . A T 112.188 . AB=0.8;ABP=6.91895;AC=1;AF=0.166667;AN=6;AO=4;CIGAR=1X;DP=27;DPB=27;DPRA=0.454545;EPP=11.6962;EPPR=52.9542;GTI=0;LEN=1;MEANALT=1;MQM=46;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=0;PAIREDR=0.913043;PAO=0;PQA=0;PQR=0;PRO=0;QA=161;QR=887;RO=23;RPL=0;RPP=11.6962;RPPR=52.9542;RPR=4;RUN=1;SAF=4;SAP=11.6962;SAR=0;SRF=23;SRP=52.9542;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:15:15,0:15:578:0:0:0,-4.51545,-52.3483 0/0:7:7,0:7:268:0:0:0,-2.10721,-24.4774 0/1:5:1,4:1:41:4:161:-13.0069,0,-2.58942 dDocent_Contig_9678 10 . T C 47.6552 . AB=0.153846;ABP=30.0702;AC=1;AF=0.166667;AN=6;AO=5;CIGAR=1X;DP=92;DPB=92;DPRA=0.679487;EPP=13.8677;EPPR=191.928;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=196;QR=3235;RO=87;RPL=0;RPP=13.8677;RPPR=191.928;RPR=5;RUN=1;SAF=5;SAP=13.8677;SAR=0;SRF=87;SRP=191.928;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:39:39,0:39:1431:0:0:0,-11.7402,-129.06 0/1:26:22,4:22:837:4:156:-6.58942,0,-67.8215 0/0:27:26,1:26:967:1:40:0,-4.13213,-83.336 dDocent_Contig_9679 10 . G A 275.808 . AB=0.1875;ABP=43.7254;AC=2;AF=0.333333;AN=6;AO=9;CIGAR=2X2M2X2M2X1M1X1M;DP=48;DPB=48;DPRA=0;EPP=22.5536;EPPR=46.4397;GTI=0;LEN=1;MEANALT=3;MQM=60;MQMR=60;NS=3;NUMALT=6;ODDS=1.38778e-17;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=344;QR=769;RO=20;RPL=0;RPP=22.5536;RPPR=46.4397;RPR=9;RUN=1;SAF=9;SAP=22.5536;SAR=0;SRF=20;SRP=46.4397;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|1:7:5,2,0,0,0,0,0:5:194:2,0,0,0,0,0:79,0,0,0,0,0:-5.39042,0,-15.7252,-6.89557,-16.3272,-22.8302,-6.89557,-16.3272,-22.8302,-22.8302,-6.89557,-16.3272,-22.8302,-22.8302,-22.8302,-6.89557,-16.3272,-22.8302,-22.8302,-22.8302,-22.8302,-6.89557,-16.3272,-22.8302,-22.8302,-22.8302,-22.8302,-22.8302 0|0:18:6,3,2,0,0,6,1:6:229:3,2,0,0,6,1:110,72,0,0,236,37:-17.6218,-10.4418,-28.3257,-13.5569,-23.3575,-31.742,-19.4279,-29.2288,-32.344,-38.2164,-19.4279,-29.2288,-32.344,-38.2164,-38.2164,0,-9.80821,-12.9241,-18.7963,-18.7963,-16.9901,-16.4715,-26.2724,-29.3875,-35.2595,-35.2595,-15.8394,-34.9585 0|1:23:9,4,0,2,4,0,4:9:346:4,0,2,4,0,4:155,0,80,152,0,147:-10.0275,0,-27.2057,-12.7368,-28.4099,-41.1446,-6.15987,-21.834,-34.5693,-33.9673,-0.542529,-16.2149,-28.9496,-22.3741,-27.7454,-12.7368,-28.4099,-41.1446,-34.5693,-28.9496,-41.1446,-0.724162,-16.3959,-29.1302,-22.5549,-16.9364,-29.1302,-27.9261 dDocent_Contig_9680 107 . N T 165.593 . AB=0;ABP=0;AC=4;AF=1;AN=4;AO=5;CIGAR=1X;DP=5;DPB=5;DPRA=0;EPP=13.8677;EPPR=0;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=0;NS=2;NUMALT=1;ODDS=0;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=173;QR=0;RO=0;RPL=0;RPP=13.8677;RPPR=0;RPR=5;RUN=1;SAF=0;SAP=13.8677;SAR=5;SRF=0;SRP=0;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 1/1:2:0,2:0:0:2:70:-6.6474,-0.60206,0 ./.:.:.:.:.:.:.:. 1/1:3:0,3:0:0:3:103:-9.61002,-0.90309,0 dDocent_Contig_9681 209 . N G 77.8076 . AB=0;ABP=0;AC=2;AF=1;AN=2;AO=2;CIGAR=1X;DP=2;DPB=2;DPRA=0;EPP=7.35324;EPPR=0;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=0;NS=1;NUMALT=1;ODDS=5.99146;PAIRED=1;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=82;QR=0;RO=0;RPL=2;RPP=7.35324;RPPR=0;RPR=0;RUN=1;SAF=0;SAP=7.35324;SAR=2;SRF=0;SRP=0;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 1/1:2:0,2:0:0:2:82:-7.77968,-0.60206,0 ./.:.:.:.:.:.:.:. ./.:.:.:.:.:.:.:. dDocent_Contig_9682 121 . G A 453.945 . AB=0.383333;ABP=10.1038;AC=3;AF=0.5;AN=6;AO=23;CIGAR=1X;DP=60;DPB=60;DPRA=0;EPP=52.9542;EPPR=83.3548;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=756;QR=1240;RO=37;RPL=0;RPP=52.9542;RPPR=83.3548;RPR=23;RUN=1;SAF=0;SAP=52.9542;SAR=23;SRF=0;SRP=83.3548;SRR=37;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:46:29,17:29:982:17:567:-37.4974,0,-74.8378 0/1:6:3,3:3:104:3:85:-6.1251,0,-7.89691 0/1:8:5,3:5:154:3:104:-7.29485,0,-11.756 dDocent_Contig_9683 31 . A G 120.403 . AB=0.333333;ABP=6.62942;AC=1;AF=0.166667;AN=6;AO=9;CIGAR=1X;DP=80;DPB=80;DPRA=0;EPP=22.5536;EPPR=157.185;GTI=0;LEN=1;MEANALT=1;MQM=59.4444;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=358;QR=2845;RO=71;RPL=0;RPP=22.5536;RPPR=157.185;RPR=9;RUN=1;SAF=9;SAP=22.5536;SAR=0;SRF=71;SRP=157.185;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:36:34,2:34:1363:2:80:0,-3.25403,-115.342 0/1:15:10,5:10:400:5:200:-13.8641,0,-31.8439 0/0:29:27,2:27:1082:2:78:0,-1.32657,-90.2636 dDocent_Contig_9684 58 . T A 78.4264 . AB=0.222222;ABP=15.074;AC=1;AF=0.166667;AN=6;AO=4;CIGAR=1X;DP=32;DPB=32;DPRA=2.57143;EPP=11.6962;EPPR=63.8115;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=160;QR=1106;RO=28;RPL=4;RPP=11.6962;RPPR=63.8115;RPR=0;RUN=1;SAF=4;SAP=11.6962;SAR=0;SRF=28;SRP=63.8115;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:18:14,4:14:549:4:160:-9.36547,0,-44.3312 0/0:5:5,0:5:193:0:0:0,-1.50515,-17.7391 0/0:9:9,0:9:364:0:0:0,-2.70927,-33.125 dDocent_Contig_9686 7 . G A 2047.47 . AB=0.630631;ABP=19.4626;AC=3;AF=0.5;AN=6;AO=70;CIGAR=1X;DP=111;DPB=111;DPRA=0;EPP=155.013;EPPR=92.0407;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=0.757143;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=2697;QR=1308;RO=41;RPL=0;RPP=155.013;RPPR=92.0407;RPR=70;RUN=1;SAF=70;SAP=155.013;SAR=0;SRF=41;SRP=92.0407;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:72:25,47:25:790:47:1810:-141.474,0,-49.708 0/1:16:4,12:4:118:12:458:-36.7536,0,-6.09445 0/1:23:12,11:12:400:11:429:-32.042,0,-29.3896 dDocent_Contig_9688 116 . T A 37.0868 . AB=0.111111;ABP=109.412;AC=2;AF=0.333333;AN=6;AO=9;CIGAR=1X;DP=116;DPB=116;DPRA=1.15714;EPP=22.5536;EPPR=235.358;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=342;QR=3705;RO=107;RPL=0;RPP=22.5536;RPPR=235.358;RPR=9;RUN=1;SAF=0;SAP=22.5536;SAR=9;SRF=0;SRP=235.358;SRR=107;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:73:66,7:66:2273:7:264:-2.14271,0,-182.849 0/1:8:6,2:6:215:2:78:-4.99523,0,-17.2909 0/0:35:35,0:35:1217:0:0:0,-10.536,-109.831 dDocent_Contig_9689 87 . A C 423.344 . AB=0.206897;ABP=46.29;AC=4;AF=0.666667;AN=6;AO=20;CIGAR=1X;DP=66;DPB=66;DPRA=0;EPP=46.4397;EPPR=102.898;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=682;QR=1558;RO=46;RPL=20;RPP=46.4397;RPPR=102.898;RPR=0;RUN=1;SAF=20;SAP=46.4397;SAR=0;SRF=46;SRP=102.898;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:50:39,11:39:1322:11:372:-18.7552,0,-104.228 1/1:8:0,8:0:0:8:275:-25.0846,-2.40824,0 0/1:8:7,1:7:236:1:35:-1.09039,0,-19.1619 dDocent_Contig_9691 19 . C G 72.3528 . AB=0.210526;ABP=16.8392;AC=3;AF=0.5;AN=6;AO=4;CIGAR=1X4M;DP=21;DPB=21;DPRA=0;EPP=11.6962;EPPR=33.4109;GTI=0;LEN=1;MEANALT=1.5;MQM=60;MQMR=60;NS=3;NUMALT=2;ODDS=3.46945e-18;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=160;QR=552;RO=14;RPL=0;RPP=11.6962;RPPR=33.4109;RPR=4;RUN=1;SAF=4;SAP=11.6962;SAR=0;SRF=14;SRP=33.4109;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|1:10:6,2,2:6:233:2,2:80,82:-4.96693,-0.188103,-18.7147,0,-12.5432,-18.534 0|1:9:7,0,2:7:278:0,2:0,78:-4.69403,-6.80124,-29.6935,0,-23.2835,-22.6815 0|1:2:1,1,0:1:41:1,0:36,0:-2.99621,0,-3.49251,-3.29724,-3.79354,-6.70614 dDocent_Contig_9692 24 . A G 347.082 . AB=0.304348;ABP=18.305;AC=1;AF=0.166667;AN=6;AO=14;CIGAR=1X;DP=112;DPB=112;DPRA=1.39394;EPP=33.4109;EPPR=215.815;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=556;QR=3896;RO=98;RPL=0;RPP=33.4109;RPPR=215.815;RPR=14;RUN=1;SAF=14;SAP=33.4109;SAR=0;SRF=98;SRP=215.815;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:31:31,0:31:1223:0:0:0,-9.33193,-110.342 0/0:35:35,0:35:1383:0:0:0,-10.536,-124.733 0/1:46:32,14:32:1290:14:556:-36.5321,0,-102.518 dDocent_Contig_9693 31 . G C 178.175 . AB=0.222222;ABP=33.1696;AC=3;AF=0.5;AN=6;AO=10;CIGAR=1X;DP=45;DPB=45;DPRA=0;EPP=24.725;EPPR=79.0118;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=0;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=397;QR=1354;RO=35;RPL=0;RPP=24.725;RPPR=79.0118;RPR=10;RUN=1;SAF=10;SAP=24.725;SAR=0;SRF=35;SRP=79.0118;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:31:25,6:25:963:6:236:-12.2777,0,-77.6422 0/1:5:3,2:3:118:2:79:-5.99209,0,-9.49757 0/1:9:7,2:7:273:2:82:-5.07041,0,-22.2274 dDocent_Contig_9694 20 . C T 33.6844 . AB=0.107143;ABP=78.0812;AC=1;AF=0.166667;AN=6;AO=15;CIGAR=1X;DP=191;DPB=191;DPRA=8.18182;EPP=35.5824;EPPR=383.018;GTI=0;LEN=1;MEANALT=1.5;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=609;QR=6984;RO=175;RPL=0;RPP=35.5824;RPPR=383.018;RPR=15;RUN=1;SAF=15;SAP=35.5824;SAR=0;SRF=175;SRP=383.018;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:124:115,9:115:4571:9:367:0,-3.93246,-377.917 0/0:11:11,0:11:440:0:0:0,-3.31133,-39.9546 0/1:56:49,6:49:1973:6:242:-5.19216,0,-160.796 dDocent_Contig_9695 61 . G T 161.477 . AB=0.428571;ABP=3.63072;AC=1;AF=0.166667;AN=6;AO=6;CIGAR=1X;DP=25;DPB=25;DPRA=2.54545;EPP=16.0391;EPPR=44.2683;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=239;QR=689;RO=19;RPL=6;RPP=16.0391;RPPR=44.2683;RPR=0;RUN=1;SAF=6;SAP=16.0391;SAR=0;SRF=19;SRP=44.2683;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:14:8,6:8:282:6:239:-17.6704,0,-21.495 0/0:3:3,0:3:122:0:0:0,-0.90309,-11.3725 0/0:8:8,0:8:285:0:0:0,-2.40824,-25.9926 dDocent_Contig_9696 7 . G A 37.6548 . AB=0.133333;ABP=38.0434;AC=1;AF=0.166667;AN=6;AO=5;CIGAR=1X;DP=66;DPB=66;DPRA=1;EPP=13.8677;EPPR=131.127;GTI=0;LEN=1;MEANALT=1.5;MQM=58.2;MQMR=58.0169;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=192;QR=2011;RO=59;RPL=0;RPP=13.8677;RPPR=131.127;RPR=5;RUN=1;SAF=5;SAP=13.8677;SAR=0;SRF=59;SRP=131.127;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:30:25,4:25:859:4:153:-5.28763,0,-68.3154 0/0:22:21,0:21:728:0:0:0,-6.32163,-62.2961 0/0:14:13,1:13:424:1:39:0,-0.340989,-34.595 dDocent_Contig_9697 7 . G A 100.429 . AB=0.238095;ABP=15.5221;AC=1;AF=0.166667;AN=6;AO=6;CIGAR=1X;DP=32;DPB=32;DPRA=7.5;EPP=16.0391;EPPR=57.2971;GTI=0;LEN=1;MEANALT=1.5;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=216;QR=773;RO=25;RPL=0;RPP=16.0391;RPPR=57.2971;RPR=6;RUN=1;SAF=6;SAP=16.0391;SAR=0;SRF=25;SRP=57.2971;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:21:15,5:15:478:5:193:-11.5648,0,-37.1741 0/0:2:2,0:2:65:0:0:0,-0.60206,-6.17329 0/0:9:8,1:8:230:1:23:0,-0.409356,-18.6781 dDocent_Contig_9698 108 . C G 57.6857 . AB=0.272727;ABP=12.8806;AC=2;AF=0.333333;AN=6;AO=8;CIGAR=1X;DP=50;DPB=50;DPRA=0;EPP=20.3821;EPPR=94.2121;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=238;QR=1388;RO=42;RPL=0;RPP=20.3821;RPPR=94.2121;RPR=8;RUN=1;SAF=0;SAP=20.3821;SAR=8;SRF=0;SRP=94.2121;SRR=42;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:28:26,2:26:840:2:70:0,-1.78144,-69.2525 0/1:4:3,1:3:105:1:27:-1.49566,0,-8.59204 0/1:18:13,5:13:443:5:141:-7.54935,0,-34.7786 dDocent_Contig_9699 54 . A G 74.4138 . AB=0.428571;ABP=3.32051;AC=1;AF=0.166667;AN=6;AO=3;CIGAR=1X;DP=35;DPB=35;DPRA=0.5;EPP=9.52472;EPPR=72.4974;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=122;QR=1258;RO=32;RPL=3;RPP=9.52472;RPPR=72.4974;RPR=0;RUN=1;SAF=3;SAP=9.52472;SAR=0;SRF=32;SRP=72.4974;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:19:19,0:19:752:0:0:0,-5.71957,-68.0032 0/1:7:4,3:4:152:3:122:-9.26528,0,-11.9408 0/0:9:9,0:9:354:0:0:0,-2.70927,-32.2201 dDocent_Contig_9701 125 . G T 1831.66 . AB=0.41206;ABP=16.3774;AC=3;AF=0.5;AN=6;AO=82;CIGAR=1X;DP=199;DPB=199;DPRA=0;EPP=181.071;EPPR=257.073;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=2746;QR=3993;RO=117;RPL=0;RPP=181.071;RPPR=257.073;RPR=82;RUN=1;SAF=0;SAP=181.071;SAR=82;SRF=0;SRP=257.073;SRR=117;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:163:92,71:92:3136:71:2387:-166.022,0,-233.414 0/1:6:5,1:5:173:1:33:-1.49295,0,-14.104 0/1:30:20,10:20:684:10:326:-20.6247,0,-52.8484 dDocent_Contig_9702 194 . C A 542.493 . AB=0.527778;ABP=3.25157;AC=3;AF=0.5;AN=6;AO=19;CIGAR=1X;DP=36;DPB=36;DPRA=0;EPP=44.2683;EPPR=39.9253;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=772;QR=664;RO=17;RPL=19;RPP=44.2683;RPPR=39.9253;RPR=0;RUN=1;SAF=0;SAP=44.2683;SAR=19;SRF=0;SRP=39.9253;SRR=17;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:16:5,11:5:193:11:448:-35.8595,0,-12.9239 0/1:11:7,4:7:274:4:163:-11.7471,0,-21.7147 0/1:9:5,4:5:197:4:161:-12.1656,0,-15.3956 dDocent_Contig_9703 37 . C T 329.636 . AB=0.311111;ABP=16.956;AC=3;AF=0.5;AN=6;AO=14;CIGAR=1X;DP=45;DPB=45;DPRA=0;EPP=33.4109;EPPR=70.3259;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=0.357143;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=565;QR=1256;RO=31;RPL=0;RPP=33.4109;RPPR=70.3259;RPR=14;RUN=1;SAF=14;SAP=33.4109;SAR=0;SRF=31;SRP=70.3259;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:12:6,6:6:245:6:238:-18.1809,0,-18.8171 0/1:16:10,6:10:409:6:245:-17.613,0,-32.3541 0/1:17:15,2:15:602:2:82:-2.66217,0,-49.398 dDocent_Contig_9704 124 . A G 324.33 . AB=0.424242;ABP=4.65535;AC=1;AF=0.166667;AN=6;AO=14;CIGAR=1X;DP=43;DPB=43;DPRA=6.6;EPP=33.4109;EPPR=65.983;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=484;QR=991;RO=29;RPL=0;RPP=33.4109;RPPR=65.983;RPR=14;RUN=1;SAF=0;SAP=33.4109;SAR=14;SRF=0;SRP=65.983;SRR=29;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:33:19,14:19:645:14:484:-33.9557,0,-48.4339 0/0:3:3,0:3:103:0:0:0,-0.90309,-9.61002 0/0:7:7,0:7:243:0:0:0,-2.10721,-22.2089 dDocent_Contig_9705 18 . A C 102.621 . AB=0.175;ABP=39.7082;AC=3;AF=0.5;AN=6;AO=7;CIGAR=1X;DP=40;DPB=40;DPRA=0;EPP=18.2106;EPPR=74.6689;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=276;QR=1301;RO=33;RPL=0;RPP=18.2106;RPPR=74.6689;RPR=7;RUN=1;SAF=7;SAP=18.2106;SAR=0;SRF=33;SRP=74.6689;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:9:6,3:6:245:3:119:-8.38574,0,-19.7202 0/1:13:12,1:12:473:1:41:-0.181177,0,-39.0075 0/1:18:15,3:15:583:3:116:-5.39697,0,-47.3825 dDocent_Contig_9707 23 . G T 65.1318 . AB=0.15625;ABP=35.8538;AC=1;AF=0.166667;AN=6;AO=5;CIGAR=1M1X1M;DP=34;DPB=32.6667;DPRA=8;EPP=13.8677;EPPR=57.2971;GTI=0;LEN=1;MEANALT=2;MQM=60;MQMR=60;NS=3;NUMALT=2;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=203;QR=1003;RO=25;RPL=0;RPP=13.8677;RPPR=57.2971;RPR=5;RUN=1;SAF=5;SAP=13.8677;SAR=0;SRF=25;SRP=57.2971;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|0:17:13,2,2:13:526:2,2:81,80:-2.76824,0,-42.7719,-0.0939437,-36.7845,-42.8616 0|0:2:2,0,0:2:77:0,0:0,0:0,-0.60206,-7.30914,-0.60206,-7.30914,-7.30914 0|1:15:10,2,3:10:400:2,3:81,123:-7.14491,-3.47802,-35.8168,0,-26.2643,-32.0412 dDocent_Contig_9709 83 . T G 161.808 . AB=0.347826;ABP=7.63648;AC=2;AF=0.333333;AN=6;AO=8;CIGAR=1X;DP=33;DPB=33;DPRA=1.15;EPP=20.3821;EPPR=57.2971;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=1.73472e-18;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=288;QR=905;RO=25;RPL=8;RPP=20.3821;RPPR=57.2971;RPR=0;RUN=1;SAF=8;SAP=20.3821;SAR=0;SRF=25;SRP=57.2971;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:17:13,4:13:471:4:144:-8.19611,0,-37.6131 0/1:6:2,4:2:71:4:144:-11.5074,0,-4.93588 0/0:10:10,0:10:363:0:0:0,-3.0103,-33.0161 dDocent_Contig_9710 33 . A T 329.645 . AB=0.464286;ABP=3.32051;AC=3;AF=0.5;AN=6;AO=13;CIGAR=1X2M1X;DP=28;DPB=28;DPRA=0;EPP=31.2394;EPPR=35.5824;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=0.846154;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=508;QR=595;RO=15;RPL=0;RPP=31.2394;RPPR=35.5824;RPR=13;RUN=1;SAF=13;SAP=31.2394;SAR=0;SRF=15;SRP=35.5824;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|1:11:9,2:9:351:2:79:-4.1863,0,-28.6359 0|1:11:5,6:5:203:6:239:-18.5737,0,-15.3417 0|1:6:1,5:1:41:5:190:-15.6579,0,-2.28839 dDocent_Contig_9713 11 . A G 110.462 . AB=0.181818;ABP=41.702;AC=3;AF=0.5;AN=6;AO=8;CIGAR=1X;DP=44;DPB=44;DPRA=0;EPP=20.3821;EPPR=81.1833;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=3.46945e-18;PAIRED=1;PAIREDR=0.972222;PAO=0;PQA=0;PQR=0;PRO=0;QA=318;QR=1381;RO=36;RPL=0;RPP=20.3821;RPPR=81.1833;RPR=8;RUN=1;SAF=8;SAP=20.3821;SAR=0;SRF=36;SRP=81.1833;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:15:12,3:12:478:3:120:-6.67186,0,-38.8553 0/1:16:14,2:14:537:2:78:-2.58699,0,-43.8512 0/1:13:10,3:10:366:3:120:-7.2743,0,-29.3595 dDocent_Contig_9715 23 . C T 130.317 . AB=0.141026;ABP=90.3146;AC=2;AF=0.333333;AN=6;AO=12;CIGAR=1X;DP=98;DPB=98;DPRA=0;EPP=29.068;EPPR=183.243;GTI=0;LEN=1;MEANALT=1.33333;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=472;QR=3305;RO=83;RPL=0;RPP=29.068;RPPR=183.243;RPR=12;RUN=1;SAF=12;SAP=29.068;SAR=0;SRF=83;SRP=183.243;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:65:55,7:55:2182:7:278:-6.32767,0,-177.485 0/1:13:9,4:9:360:4:153:-10.2269,0,-28.8486 0/0:20:19,1:19:763:1:41:0,-1.92603,-64.8947 dDocent_Contig_9716 20 . G A 1187.38 . AB=0.410256;ABP=11.1951;AC=3;AF=0.5;AN=6;AO=48;CIGAR=1X;DP=117;DPB=117;DPRA=0;EPP=107.241;EPPR=152.842;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=0.958333;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=1743;QR=2766;RO=69;RPL=0;RPP=107.241;RPPR=152.842;RPR=48;RUN=1;SAF=48;SAP=107.241;SAR=0;SRF=69;SRP=152.842;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:90:58,32:58:2329:32:1172:-78.6949,0,-182.671 0/1:11:1,10:1:37:10:358:-29.251,0,-0.386499 0/1:16:10,6:10:400:6:213:-14.6983,0,-31.5432 dDocent_Contig_9717 18 . T C 936.656 . AB=0.457143;ABP=4.12706;AC=3;AF=0.5;AN=6;AO=32;CIGAR=1X1M1D9M;DP=70;DPB=68.5;DPRA=0;EPP=72.4974;EPPR=48.6112;GTI=0;LEN=1;MEANALT=2.33333;MQM=60;MQMR=60;NS=3;NUMALT=3;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=1273;QR=825;RO=21;RPL=0;RPP=72.4974;RPPR=48.6112;RPR=32;RUN=1;SAF=32;SAP=72.4974;SAR=0;SRF=21;SRP=48.6112;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|1:13:6,7,0,0:6:240:7,0,0:281,0,0:-21.7486,0,-18.0628,-23.5548,-20.1701,-43.3246,-23.5548,-20.1701,-43.3246,-43.3246 0|1:37:11,15,10,0:11:429:15,10,0:591,373,0:-45.3362,0,-30.769,-18.1117,-4.74448,-50.3709,-48.6475,-35.2845,-53.3812,-83.9157 1|0:20:4,10,4,2:4:156:10,4,2:401,158,80:-32.0176,-0.1818,-9.99191,-20.2216,0,-31.8379,-26.6317,-6.41077,-26.4518,-38.8506 dDocent_Contig_9719 10 . T A 1120.11 . AB=0.40566;ABP=11.2045;AC=3;AF=0.5;AN=6;AO=43;CIGAR=1X8M;DP=106;DPB=106;DPRA=0;EPP=96.3836;EPPR=63.8115;GTI=0;LEN=1;MEANALT=3.33333;MQM=60;MQMR=60;NS=3;NUMALT=4;ODDS=2.77556e-17;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=1543;QR=1052;RO=28;RPL=0;RPP=96.3836;RPPR=63.8115;RPR=43;RUN=1;SAF=43;SAP=96.3836;SAR=0;SRF=28;SRP=63.8115;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|1:41:11,9,5,16,0:11:405:9,5,16,0:339,193,575,0:-43.6344,-19.1434,-49.5724,-44.4496,-49.7821,-76.0584,0,-5.34216,-30.6687,-28.338,-46.9458,-52.2816,-77.5635,-33.1544,-80.0719 0|1:25:4,3,0,14,4:4:146:3,0,14,4:118,0,518,120:-41.2363,-32.7244,-43.7552,-42.4404,-44.6583,-54.372,0,-2.22121,-11.9601,-7.7457,-36.9849,-39.2002,-48.9105,-6.5382,-47.7064 0|1:40:13,11,1,13,2:13:501:11,1,13,2:419,40,450,59:-32.6609,-2.17801,-40.0394,-36.0752,-42.8511,-76.9255,0,-6.78121,-40.6662,-37.2512,-33.8443,-40.6202,-74.4937,-38.4361,-74.393 dDocent_Contig_9720 90 . T C 143.004 . AB=0.368421;ABP=5.8675;AC=1;AF=0.166667;AN=6;AO=8;CIGAR=1X;DP=72;DPB=72;DPRA=2.5;EPP=20.3821;EPPR=141.985;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=274;QR=2172;RO=64;RPL=8;RPP=20.3821;RPPR=141.985;RPR=0;RUN=1;SAF=8;SAP=20.3821;SAR=0;SRF=64;SRP=141.985;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:41:40,1:40:1353:1:35:0,-8.8436,-118.562 0/1:19:12,7:12:399:7:239:-16.1244,0,-30.5106 0/0:12:12,0:12:420:0:0:0,-3.61236,-38.1347 dDocent_Contig_9722 46 . A T 430.293 . AB=0.414634;ABP=5.60547;AC=2;AF=0.333333;AN=6;AO=17;CIGAR=3M1X1M;DP=42;DPB=41.6;DPRA=20.5;EPP=39.9253;EPPR=52.9542;GTI=0;LEN=1;MEANALT=1.5;MQM=59.7059;MQMR=60;NS=3;NUMALT=2;ODDS=0;PAIRED=0;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=644;QR=921;RO=23;RPL=0;RPP=39.9253;RPPR=52.9542;RPR=17;RUN=1;SAF=0;SAP=39.9253;SAR=17;SRF=23;SRP=52.9542;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|1:27:12,2,13:12:485:2,13:74,496:-37.0832,-34.6515,-74.0462,0,-33.9747,-36.102 0|0:1:1,0,0:1:40:0,0:0,0:0,-0.30103,-3.99568,-0.30103,-3.99568,-3.99568 0|1:14:10,0,4:10:396:0,4:0,148:-9.46755,-12.4778,-45.0887,0,-32.9881,-31.7839 dDocent_Contig_9723 26 . T A 209.476 . AB=0.7;ABP=6.48466;AC=1;AF=0.166667;AN=6;AO=7;CIGAR=1X;DP=23;DPB=23;DPRA=1.53846;EPP=18.2106;EPPR=37.7539;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=279;QR=652;RO=16;RPL=0;RPP=18.2106;RPPR=37.7539;RPR=7;RUN=1;SAF=7;SAP=18.2106;SAR=0;SRF=16;SRP=37.7539;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:10:3,7:3:122:7:279:-22.4705,0,-8.36219 0/0:7:7,0:7:287:0:0:0,-2.10721,-26.2052 0/0:6:6,0:6:243:0:0:0,-1.80618,-22.2476 dDocent_Contig_9724 43 . T C 139.808 . AB=0.3;ABP=9.95901;AC=1;AF=0.25;AN=4;AO=6;CIGAR=1X;DP=26;DPB=26;DPRA=3.33333;EPP=16.0391;EPPR=46.4397;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=2;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=237;QR=810;RO=20;RPL=0;RPP=16.0391;RPPR=46.4397;RPR=6;RUN=1;SAF=6;SAP=16.0391;SAR=0;SRF=20;SRP=46.4397;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL ./.:.:.:.:.:.:.:. 0/1:20:14,6:14:564:6:237:-15.6797,0,-45.081 0/0:6:6,0:6:246:0:0:0,-1.80618,-22.5201 dDocent_Contig_9725 72 . A T 123.735 . AB=0.375;ABP=5.18177;AC=2;AF=0.333333;AN=6;AO=6;CIGAR=1M2D1M1X;DP=23;DPB=20.6;DPRA=1.14286;EPP=16.0391;EPPR=39.9253;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=222;QR=629;RO=17;RPL=6;RPP=16.0391;RPPR=39.9253;RPR=0;RUN=1;SAF=6;SAP=16.0391;SAR=0;SRF=17;SRP=39.9253;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|1:10:8,2:8:296:2:78:-4.39317,0,-23.9826 0|1:6:2,4:2:77:4:144:-11.5025,0,-5.50296 0|0:7:7,0:7:256:0:0:0,-2.10721,-23.3928 dDocent_Contig_9726 30 . A G 781.513 . AB=0.322581;ABP=28.4375;AC=2;AF=0.333333;AN=6;AO=30;CIGAR=1X;DP=96;DPB=96;DPRA=15.5;EPP=68.1545;EPPR=146.327;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=1211;QR=2593;RO=66;RPL=0;RPP=68.1545;RPPR=146.327;RPR=30;RUN=1;SAF=30;SAP=68.1545;SAR=0;SRF=66;SRP=146.327;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:66:41,25:41:1596:25:1006:-70.9668,0,-124.012 0/0:3:3,0:3:120:0:0:0,-0.90309,-11.1877 0/1:27:22,5:22:877:5:205:-10.7072,0,-71.1124 dDocent_Contig_9728 34 . G C 105.204 . AB=0.179487;ABP=37.8095;AC=2;AF=0.333333;AN=6;AO=7;CIGAR=1X;DP=106;DPB=106;DPRA=0.291045;EPP=18.2106;EPPR=217.986;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=278;QR=3804;RO=99;RPL=0;RPP=18.2106;RPPR=217.986;RPR=7;RUN=1;SAF=7;SAP=18.2106;SAR=0;SRF=99;SRP=217.986;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:67:67,0:67:2592:0:0:0,-20.169,-233.462 0/1:17:14,3:14:534:3:115:-5.60752,0,-43.2846 0/1:22:18,4:18:678:4:163:-8.43577,0,-54.7285 dDocent_Contig_9729 23 . A G 98.5812 . AB=0.4;ABP=3.87889;AC=1;AF=0.166667;AN=6;AO=4;CIGAR=1X3M1X;DP=34;DPB=34;DPRA=0.833333;EPP=11.6962;EPPR=68.1545;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=159;QR=1150;RO=30;RPL=0;RPP=11.6962;RPPR=68.1545;RPR=4;RUN=1;SAF=4;SAP=11.6962;SAR=0;SRF=30;SRP=68.1545;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|0:12:12,0:12:454:0:0:0,-3.61236,-41.2036 0|0:12:12,0:12:462:0:0:0,-3.61236,-41.9298 0|1:10:6,4:6:234:4:159:-11.682,0,-18.4206 dDocent_Contig_9731 7 . G T 50.1744 . AB=0.102273;ABP=123.922;AC=2;AF=0.333333;AN=6;AO=12;CIGAR=2X;DP=147;DPB=147;DPRA=0;EPP=29.068;EPPR=261.416;GTI=0;LEN=1;MEANALT=3;MQM=59.8333;MQMR=60;NS=3;NUMALT=2;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=456;QR=3901;RO=119;RPL=0;RPP=29.068;RPPR=261.416;RPR=12;RUN=1;SAF=12;SAP=29.068;SAR=0;SRF=119;SRP=261.416;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|1:26:22,4,0:22:745:4,0:155,0:-6.49866,0,-59.5274,-13.1213,-60.7315,-73.4732 0|0:59:50,3,4:50:1713:3,4:111,150:0,-5.9589,-144.098,-2.74146,-132.712,-140.59 0|1:62:47,5,4:47:1443:5,4:190,147:-1.47982,0,-114.219,-3.58101,-103.702,-118.086 dDocent_Contig_9732 106 . N A 149.266 . AB=0;ABP=0;AC=4;AF=1;AN=4;AO=4;CIGAR=2X;DP=4;DPB=4;DPRA=0;EPP=11.6962;EPPR=0;GTI=0;LEN=1;MEANALT=1;MQM=44;MQMR=0;NS=2;NUMALT=1;ODDS=0;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=160;QR=0;RO=0;RPL=0;RPP=11.6962;RPPR=0;RPR=4;RUN=1;SAF=4;SAP=11.6962;SAR=0;SRF=0;SRP=0;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 1|1:3:0,3:0:0:3:122:-10.9215,-0.90309,0 1|1:1:0,1:0:0:1:38:-3.70269,-0.30103,0 .:.:.:.:.:.:.:. dDocent_Contig_9733 15 . G A 68.9889 . AB=0.153846;ABP=57.1301;AC=3;AF=0.5;AN=6;AO=8;CIGAR=1X;DP=52;DPB=52;DPRA=0;EPP=20.3821;EPPR=98.5551;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=299;QR=1763;RO=44;RPL=0;RPP=20.3821;RPPR=98.5551;RPR=8;RUN=1;SAF=8;SAP=20.3821;SAR=0;SRF=44;SRP=98.5551;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:38:33,5:33:1324:5:190:-6.02763,0,-107.983 0/1:5:4,1:4:158:1:38:-2.29212,0,-13.0942 0/1:9:7,2:7:281:2:71:-4.03263,0,-22.9531 dDocent_Contig_9734 13 . A G 44.5065 . AB=0.333333;ABP=4.45795;AC=1;AF=0.166667;AN=6;AO=2;CIGAR=1X;DP=22;DPB=22;DPRA=0.75;EPP=7.35324;EPPR=46.4397;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=8.67362e-19;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=82;QR=764;RO=20;RPL=0;RPP=7.35324;RPPR=46.4397;RPR=2;RUN=1;SAF=2;SAP=7.35324;SAR=0;SRF=20;SRP=46.4397;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:6:4,2:4:158:2:82:-5.9735,0,-12.7945 0/0:8:8,0:8:314:0:0:0,-2.40824,-28.6248 0/0:8:8,0:8:292:0:0:0,-2.40824,-26.6217 dDocent_Contig_9735 42 . G A 93.4758 . AB=0.333333;ABP=5.9056;AC=1;AF=0.166667;AN=6;AO=4;CIGAR=1X;DP=38;DPB=38;DPRA=0.923077;EPP=11.6962;EPPR=76.8404;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=160;QR=1377;RO=34;RPL=0;RPP=11.6962;RPPR=76.8404;RPR=4;RUN=1;SAF=4;SAP=11.6962;SAR=0;SRF=34;SRP=76.8404;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:21:21,0:21:853:0:0:0,-6.32163,-77.0799 0/1:12:8,4:8:319:4:160:-11.1714,0,-25.4635 0/0:5:5,0:5:205:0:0:0,-1.50515,-18.835 dDocent_Contig_9736 42 . G A 93.548 . AB=0.1875;ABP=30.1537;AC=2;AF=0.333333;AN=6;AO=8;CIGAR=1X;DP=66;DPB=66;DPRA=0;EPP=20.3821;EPPR=128.956;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=322;QR=2290;RO=58;RPL=0;RPP=20.3821;RPPR=128.956;RPR=8;RUN=1;SAF=8;SAP=20.3821;SAR=0;SRF=58;SRP=128.956;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:34:32,2:32:1261:2:81:0,-2.54929,-106.077 0/1:5:4,1:4:158:1:40:-2.49053,0,-13.0947 0/1:27:22,5:22:871:5:201:-10.3427,0,-70.5695 dDocent_Contig_9737 47 . A G 222.811 . AB=0.244444;ABP=28.5372;AC=2;AF=0.333333;AN=6;AO=11;CIGAR=1M1D1M1X;DP=67;DPB=64.25;DPRA=1.02273;EPP=26.8965;EPPR=122.441;GTI=0;LEN=1;MEANALT=1.5;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=3.46945e-18;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=430;QR=2139;RO=55;RPL=0;RPP=26.8965;RPPR=122.441;RPR=11;RUN=1;SAF=11;SAP=26.8965;SAR=0;SRF=55;SRP=122.441;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|1:37:28,9:28:1082:9:353:-20.9908,0,-86.5402 0|1:8:5,2:5:187:2:77:-4.81301,0,-14.6963 0|0:22:22,0:22:870:0:0:0,-6.62266,-78.6137 dDocent_Contig_9738 33 . C T 264.161 . AB=0.333333;ABP=10.9724;AC=1;AF=0.166667;AN=6;AO=13;CIGAR=1X;DP=82;DPB=82;DPRA=0;EPP=31.2394;EPPR=152.842;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=3.46945e-18;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=497;QR=2726;RO=69;RPL=0;RPP=31.2394;RPPR=152.842;RPR=13;RUN=1;SAF=13;SAP=31.2394;SAR=0;SRF=69;SRP=152.842;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:33:22,11:22:864:11:417:-27.9381,0,-68.139 0/0:14:13,1:13:513:1:40:0,-0.218741,-42.5227 0/0:35:34,1:34:1349:1:40:0,-6.54037,-117.674 dDocent_Contig_9739 107 . N T 66.4848 . AB=0;ABP=0;AC=2;AF=1;AN=2;AO=2;CIGAR=1X;DP=2;DPB=2;DPRA=0;EPP=7.35324;EPPR=0;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=0;NS=1;NUMALT=1;ODDS=5.99146;PAIRED=1;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=70;QR=0;RO=0;RPL=0;RPP=7.35324;RPPR=0;RPR=2;RUN=1;SAF=0;SAP=7.35324;SAR=2;SRF=0;SRP=0;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL ./.:.:.:.:.:.:.:. ./.:.:.:.:.:.:.:. 1/1:2:0,2:0:0:2:70:-6.6474,-0.60206,0 dDocent_Contig_9740 97 . C G 65.6038 . AB=0.307692;ABP=7.18621;AC=1;AF=0.166667;AN=6;AO=4;CIGAR=1X;DP=40;DPB=40;DPRA=0.962963;EPP=11.6962;EPPR=81.1833;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=133;QR=1211;RO=36;RPL=4;RPP=11.6962;RPPR=81.1833;RPR=0;RUN=1;SAF=4;SAP=11.6962;SAR=0;SRF=36;SRP=81.1833;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:23:23,0:23:795:0:0:0,-6.92369,-71.8677 0/0:4:4,0:4:112:0:0:0,-1.20412,-10.3562 0/1:13:9,4:9:304:4:133:-8.3842,0,-23.7744 dDocent_Contig_9742 26 . A T 71.4845 . AB=0;ABP=0;AC=4;AF=1;AN=4;AO=4;CIGAR=1M3I1X1M1X2M3I2M;DP=4;DPB=7;DPRA=0;EPP=11.6962;EPPR=0;GTI=0;LEN=1;MEANALT=1;MQM=21;MQMR=0;NS=2;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=84;QR=0;RO=0;RPL=0;RPP=11.6962;RPPR=0;RPR=4;RUN=1;SAF=4;SAP=11.6962;SAR=0;SRF=0;SRP=0;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 1|1:3:0,3:0:0:3:63:-5.04196,-0.90309,0 .:.:.:.:.:.:.:. 1|1:1:0,1:0:0:1:21:-1.8007,-0.30103,0 dDocent_Contig_9743 20 . A T 1400.67 . AB=0.157895;ABP=22.325;AC=1;AF=0.166667;AN=6;AO=3;CIGAR=1M1D2M1X11M;DP=97;DPB=93.75;DPRA=0;EPP=9.52472;EPPR=98.5551;GTI=0;LEN=1;MEANALT=2;MQM=59.3333;MQMR=60;NS=3;NUMALT=2;ODDS=6.93889e-18;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=120;QR=1742;RO=44;RPL=0;RPP=9.52472;RPPR=98.5551;RPR=3;RUN=1;SAF=3;SAP=9.52472;SAR=0;SRF=44;SRP=98.5551;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|0:52:29,0,22:29:1150:0,22:0,870:-62.8586,-71.5884,-166.254,0,-94.6709,-88.0482 1|0:19:3,3,13:3:115:3,13:120,489:-39.5904,-30.6073,-39.1441,-0.459647,0,-5.97666 0|0:26:12,0,14:12:477:0,14:0,562:-43.093,-46.7054,-85.977,0,-39.6705,-35.456 dDocent_Contig_9744 27 . G T 125.237 . AB=0.357143;ABP=5.49198;AC=1;AF=0.166667;AN=6;AO=6;CIGAR=1X;DP=66;DPB=66;DPRA=0.875;EPP=16.0391;EPPR=133.299;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=0.966667;PAO=0;PQA=0;PQR=0;PRO=0;QA=243;QR=2379;RO=60;RPL=0;RPP=16.0391;RPPR=133.299;RPR=6;RUN=1;SAF=6;SAP=16.0391;SAR=0;SRF=60;SRP=133.299;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:28:27,1:27:1068:1:41:0,-4.33427,-92.3167 0/1:14:9,5:9:355:5:202:-14.3477,0,-28.0925 0/0:24:24,0:24:956:0:0:0,-7.22472,-86.3387 dDocent_Contig_9745 35 . C G 43.5669 . AB=0.4;ABP=3.44459;AC=1;AF=0.166667;AN=6;AO=3;CIGAR=1X;DP=50;DPB=50;DPRA=0.815789;EPP=9.52472;EPPR=105.07;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=59.1277;NS=3;NUMALT=1;ODDS=1.73472e-18;PAIRED=1;PAIREDR=0.978723;PAO=0;PQA=0;PQR=0;PRO=0;QA=122;QR=1859;RO=47;RPL=0;RPP=9.52472;RPPR=105.07;RPR=3;RUN=1;SAF=3;SAP=9.52472;SAR=0;SRF=47;SRP=105.07;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:26:25,1:25:993:1:41:0,-3.73221,-83.5912 0/1:5:3,2:3:104:2:81:-6.18058,0,-8.19415 0/0:19:19,0:19:762:0:0:0,-5.71957,-68.9024 dDocent_Contig_9747 9 . T A 61.1714 . AB=0.25;ABP=11.6962;AC=1;AF=0.166667;AN=6;AO=4;CIGAR=1X;DP=31;DPB=31;DPRA=2.13333;EPP=11.6962;EPPR=61.6401;GTI=0;LEN=1;MEANALT=1;MQM=59.75;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=138;QR=868;RO=27;RPL=0;RPP=11.6962;RPPR=61.6401;RPR=4;RUN=1;SAF=4;SAP=11.6962;SAR=0;SRF=27;SRP=61.6401;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:11:11,0:11:369:0:0:0,-3.31133,-33.5299 0/1:16:12,4:12:385:4:138:-7.94096,0,-30.1407 0/0:4:4,0:4:114:0:0:0,-1.20412,-10.5427 dDocent_Contig_9748 61 . C T 420.493 . AB=0.367347;ABP=10.4997;AC=3;AF=0.5;AN=6;AO=18;CIGAR=13M1X7M;DP=49;DPB=43.5714;DPRA=0;EPP=42.0968;EPPR=52.9542;GTI=0;LEN=1;MEANALT=2;MQM=60;MQMR=60;NS=3;NUMALT=3;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=666;QR=889;RO=23;RPL=18;RPP=42.0968;RPPR=52.9542;RPR=0;RUN=1;SAF=18;SAP=42.0968;SAR=0;SRF=23;SRP=52.9542;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|1:22:8,0,4,10:8:304:0,4,10:0,134,355:-26.5176,-28.9258,-53.8629,-18.0801,-43.0172,-41.8131,0,-24.9558,-14.1194,-21.9455 0|1:18:12,2,0,4:12:466:2,0,4:72,0,148:-8.49873,-6.23988,-43.9406,-12.1111,-44.5426,-50.4145,0,-32.4427,-38.3132,-37.1091 0|1:9:3,0,2,4:3:119:0,2,4:0,78,163:-12.5558,-13.4589,-23.2533,-7.05307,-16.8445,-16.2425,0,-9.80001,-3.39106,-8.59589 dDocent_Contig_9749 19 . A C 217.486 . AB=0.229167;ABP=33.5919;AC=2;AF=0.333333;AN=6;AO=11;CIGAR=1X;DP=55;DPB=55;DPRA=3.42857;EPP=26.8965;EPPR=98.5551;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=433;QR=1769;RO=44;RPL=0;RPP=26.8965;RPPR=98.5551;RPR=11;RUN=1;SAF=11;SAP=26.8965;SAR=0;SRF=44;SRP=98.5551;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:37:29,8:29:1162:8:310:-17.118,0,-93.7127 0/0:7:7,0:7:281:0:0:0,-2.10721,-25.6611 0/1:11:8,3:8:326:3:123:-8.15346,0,-26.3985 dDocent_Contig_9752 47 . C A 187.425 . AB=0.1625;ABP=82.1605;AC=2;AF=0.333333;AN=6;AO=15;CIGAR=1X;DP=115;DPB=115;DPRA=0;EPP=35.5824;EPPR=220.158;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=0.93;PAO=0;PQA=0;PQR=0;PRO=0;QA=586;QR=3986;RO=100;RPL=0;RPP=35.5824;RPPR=220.158;RPR=15;RUN=1;SAF=15;SAP=35.5824;SAR=0;SRF=100;SRP=220.158;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:35:33,2:33:1305:2:78:0,-3.13275,-110.31 0/1:51:41,10:41:1635:10:394:-20.4645,0,-132.029 0/1:29:26,3:26:1046:3:114:-1.89935,0,-85.7022 dDocent_Contig_9753 54 . G A 542.029 . AB=0.325301;ABP=25.0128;AC=3;AF=0.5;AN=6;AO=27;CIGAR=1X;DP=83;DPB=83;DPRA=0;EPP=61.6401;EPPR=124.613;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=930;QR=1884;RO=56;RPL=27;RPP=61.6401;RPPR=124.613;RPR=0;RUN=1;SAF=27;SAP=61.6401;SAR=0;SRF=56;SRP=124.613;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:41:30,11:30:1010:11:395:-23.549,0,-78.8627 0/1:5:2,3:2:70:3:108:-8.56993,0,-5.14218 0/1:37:24,13:24:804:13:427:-27.6067,0,-61.5323 dDocent_Contig_9754 55 . A G 1302.86 . AB=0.170455;ABP=86.0198;AC=1;AF=0.166667;AN=6;AO=15;CIGAR=1X3M1X2M;DP=88;DPB=88;DPRA=0;EPP=35.5824;EPPR=50.7827;GTI=0;LEN=1;MEANALT=3;MQM=60;MQMR=60;NS=3;NUMALT=3;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=584;QR=865;RO=22;RPL=15;RPP=35.5824;RPPR=50.7827;RPR=0;RUN=1;SAF=15;SAP=35.5824;SAR=0;SRF=22;SRP=50.7827;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|0:38:13,7,2,16:13:514:7,2,16:273,80,646:-49.3481,-30.825,-71.0147,-46.6713,-66.5317,-88.3679,0,-19.8638,-35.7113,-37.4856 0|0:15:4,2,1,8:4:155:2,1,8:78,40,319:-25.0703,-19.8644,-31.9929,-22.9791,-29.2995,-35.4093,0,-6.31908,-9.43394,-10.3224 1|0:35:5,6,6,18:5:196:6,6,18:233,221,726:-61.3792,-43.7409,-58.0524,-44.8275,-41.8022,-59.1381,-3.02585,0,-1.09253,-13.7295 dDocent_Contig_9755 7 . G A 956.972 . AB=0.455696;ABP=4.35716;AC=3;AF=0.5;AN=6;AO=36;CIGAR=1X;DP=79;DPB=79;DPRA=0;EPP=81.1833;EPPR=94.2121;GTI=0;LEN=1;MEANALT=1.33333;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=1375;QR=1336;RO=42;RPL=0;RPP=81.1833;RPPR=94.2121;RPR=36;RUN=1;SAF=36;SAP=81.1833;SAR=0;SRF=42;SRP=94.2121;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:47:23,23:23:733:23:873:-64.9209,0,-52.2877 0/1:3:1,2:1:39:2:78:-6.50038,0,-2.99347 0/1:29:18,11:18:564:11:424:-29.7843,0,-42.3106 dDocent_Contig_9757 11 . C T 2078.23 . AB=0.737864;ABP=53.6288;AC=3;AF=0.5;AN=6;AO=76;CIGAR=1X;DP=103;DPB=103;DPRA=0;EPP=168.042;EPPR=61.6401;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=2705;QR=955;RO=27;RPL=0;RPP=168.042;RPPR=61.6401;RPR=76;RUN=1;SAF=76;SAP=168.042;SAR=0;SRF=27;SRP=61.6401;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:46:5,41:5:186:41:1459:-117.735,0,-3.25283 0/1:36:14,22:14:491:22:823:-63.5556,0,-33.6722 0/1:21:8,13:8:278:13:423:-32.0478,0,-19.0294 dDocent_Contig_9758 13 . A T 81.2738 . AB=0.178571;ABP=28.1373;AC=1;AF=0.166667;AN=6;AO=5;CIGAR=1X3M1X;DP=85;DPB=85;DPRA=0.982456;EPP=13.8677;EPPR=176.728;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=200;QR=3142;RO=80;RPL=0;RPP=13.8677;RPPR=176.728;RPR=5;RUN=1;SAF=5;SAP=13.8677;SAR=0;SRF=80;SRP=176.728;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|0:49:49,0:49:1930:0:0:0,-14.7505,-173.918 0|0:8:8,0:8:305:0:0:0,-2.40824,-27.8043 0|1:28:23,5:23:907:5:200:-9.95128,0,-73.5131 dDocent_Contig_9759 7 . G A 1622.83 . AB=0.178771;ABP=484.313;AC=3;AF=0.5;AN=6;AO=96;CIGAR=1X;DP=537;DPB=537;DPRA=0;EPP=211.472;EPPR=841.071;GTI=0;LEN=1;MEANALT=3;MQM=58.4896;MQMR=57.2706;NS=3;NUMALT=1;ODDS=0;PAIRED=0.989583;PAIREDR=0.891765;PAO=0;PQA=0;PQR=0;PRO=0;QA=3609;QR=13841;RO=425;RPL=0;RPP=211.472;RPPR=925.886;RPR=96;RUN=1;SAF=96;SAP=211.472;SAR=0;SRF=415;SRP=841.071;SRR=10;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:174:135,32:135:4317:32:1196:-57.2407,0,-334 0/1:231:191,36:191:6354:36:1363:-54.2166,0,-488.351 0/1:132:99,28:99:3170:28:1050:-56.3482,0,-245.032 dDocent_Contig_9760 137 . T G 150.587 . AB=0.787037;ABP=80.2986;AC=3;AF=0.5;AN=6;AO=85;CIGAR=1X;DP=108;DPB=108;DPRA=0;EPP=154.477;EPPR=48.6112;GTI=0;LEN=1;MEANALT=1.33333;MQM=6.85882;MQMR=60;NS=3;NUMALT=1;ODDS=6.93889e-18;PAIRED=0;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=2951;QR=735;RO=21;RPL=0;RPP=187.585;RPPR=48.6112;RPR=85;RUN=1;SAF=4;SAP=154.477;SAR=81;SRF=0;SRP=48.6112;SRR=21;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:62:12,48:12:414:48:1666:-11.4503,0,-19.3614 0/1:20:4,16:4:141:16:560:-4.30202,0,-7.01643 0/1:26:5,21:5:180:21:725:-4.82829,0,-8.72528 dDocent_Contig_9761 22 . T G 34.0283 . AB=0.125;ABP=42.0968;AC=1;AF=0.166667;AN=6;AO=4;CIGAR=1X;DP=74;DPB=74;DPRA=1.52381;EPP=11.6962;EPPR=152.842;GTI=0;LEN=1;MEANALT=2;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=162;QR=2405;RO=69;RPL=0;RPP=11.6962;RPPR=152.842;RPR=4;RUN=1;SAF=4;SAP=11.6962;SAR=0;SRF=69;SRP=152.842;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:34:34,0:34:1193:0:0:0,-10.235,-107.658 0/0:8:8,0:8:279:0:0:0,-2.40824,-25.4457 0/1:32:27,4:27:933:4:162:-5.22656,0,-74.5292 dDocent_Contig_9762 12 . T A 623.375 . AB=0.652174;ABP=7.63648;AC=2;AF=0.333333;AN=6;AO=15;CIGAR=1X1M1X;DP=46;DPB=46;DPRA=0;EPP=35.5824;EPPR=50.7827;GTI=0;LEN=1;MEANALT=1.5;MQM=60;MQMR=60;NS=3;NUMALT=2;ODDS=3.46945e-18;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=542;QR=829;RO=22;RPL=0;RPP=35.5824;RPPR=50.7827;RPR=15;RUN=1;SAF=15;SAP=35.5824;SAR=0;SRF=22;SRP=50.7827;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|0:23:16,0,7:16:602:0,7:0,276:-18.2856,-23.1021,-72.4128,0,-49.6991,-47.5919 0|1:16:6,10,0:6:227:10,0:358,0:-27.7435,0,-15.9763,-29.5497,-18.9866,-48.1658 1|0:7:0,5,2:0:0:5,2:184,78:-21.8311,-6.80124,-5.29609,-15.4133,0,-14.8112 dDocent_Contig_9764 114 . T C 240.565 . AB=0.225352;ABP=49.5287;AC=2;AF=0.333333;AN=6;AO=18;CIGAR=1X;DP=100;DPB=100;DPRA=0;EPP=42.0968;EPPR=181.071;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=607;QR=2702;RO=82;RPL=0;RPP=42.0968;RPPR=181.071;RPR=18;RUN=1;SAF=0;SAP=42.0968;SAR=18;SRF=0;SRP=181.071;SRR=82;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:58:45,13:45:1506:13:449:-23.2808,0,-118.367 0/1:13:10,3:10:299:3:88:-4.29782,0,-23.2874 0/0:29:27,2:27:897:2:70:0,-2.08247,-74.3874 dDocent_Contig_9766 133 . A G 92.3749 . AB=0.2;ABP=26.4622;AC=1;AF=0.166667;AN=6;AO=6;CIGAR=1X;DP=42;DPB=42;DPRA=5;EPP=16.0391;EPPR=81.1833;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=1.73472e-18;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=216;QR=1287;RO=36;RPL=0;RPP=16.0391;RPPR=81.1833;RPR=6;RUN=1;SAF=0;SAP=16.0391;SAR=6;SRF=0;SRP=81.1833;SRR=36;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:30:24,6:24:856:6:216:-10.7596,0,-68.3306 0/0:1:1,0:1:36:0:0:0,-0.30103,-3.59827 0/0:11:11,0:11:395:0:0:0,-3.31133,-35.8922 dDocent_Contig_9767 118 . A G 35.6394 . AB=0.3;ABP=6.48466;AC=1;AF=0.166667;AN=6;AO=4;CIGAR=1X3M1X;DP=28;DPB=28;DPRA=4.16667;EPP=11.6962;EPPR=55.1256;GTI=0;LEN=1;MEANALT=1;MQM=47.25;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=0;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=122;QR=820;RO=24;RPL=0;RPP=11.6962;RPPR=55.1256;RPR=4;RUN=1;SAF=0;SAP=11.6962;SAR=4;SRF=0;SRP=55.1256;SRR=24;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|0:15:14,1:14:480:1:32:0,-3.61735,-42.6291 0|0:3:3,0:3:100:0:0:0,-0.90309,-9.3307 0|1:10:7,3:7:240:3:90:-5.38755,0,-18.925 dDocent_Contig_9768 10 . C T 990.712 . AB=0.427184;ABP=7.75381;AC=3;AF=0.5;AN=6;AO=44;CIGAR=1X;DP=103;DPB=103;DPRA=0;EPP=60.0608;EPPR=131.127;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=0.772727;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=1496;QR=2236;RO=59;RPL=0;RPP=98.5551;RPPR=131.127;RPR=44;RUN=1;SAF=39;SAP=60.0608;SAR=5;SRF=59;SRP=131.127;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:51:28,23:28:1065:23:757:-53.0737,0,-80.7809 0/1:9:3,6:3:123:6:205:-16.0757,0,-8.75552 0/1:43:28,15:28:1048:15:534:-35.4446,0,-81.6578 dDocent_Contig_9769 44 . T G 37.547 . AB=0.25;ABP=7.35324;AC=1;AF=0.166667;AN=6;AO=2;CIGAR=1X;DP=25;DPB=25;DPRA=0.941176;EPP=3.0103;EPPR=24.253;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=81;QR=885;RO=23;RPL=0;RPP=7.35324;RPPR=52.9542;RPR=2;RUN=1;SAF=1;SAP=3.0103;SAR=1;SRF=19;SRP=24.253;SRR=4;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:8:6,2:6:236:2:81:-5.27749,0,-19.2035 0/0:8:8,0:8:286:0:0:0,-2.40824,-26.0791 0/0:9:9,0:9:363:0:0:0,-2.70927,-33.0343 dDocent_Contig_9770 14 . T C 2064.45 . AB=0.243902;ABP=213.219;AC=3;AF=0.5;AN=6;AO=90;CIGAR=1X;DP=369;DPB=369;DPRA=0;EPP=198.443;EPPR=606.68;GTI=0;LEN=1;MEANALT=1.33333;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=0.992806;PAO=0;PQA=0;PQR=0;PRO=0;QA=3581;QR=11072;RO=278;RPL=0;RPP=198.443;RPPR=606.68;RPR=90;RUN=1;SAF=90;SAP=198.443;SAR=0;SRF=278;SRP=606.68;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:229:174,54:174:6925:54:2147:-124.378,0,-553.9 0/1:51:46,5:46:1829:5:196:-2.6597,0,-149.471 0/1:89:58,31:58:2318:31:1238:-84.8991,0,-181.987 dDocent_Contig_9771 62 . T G 286.703 . AB=0.40625;ABP=5.45321;AC=3;AF=0.5;AN=6;AO=13;CIGAR=1X;DP=32;DPB=32;DPRA=0;EPP=31.2394;EPPR=44.2683;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=475;QR=630;RO=19;RPL=13;RPP=31.2394;RPPR=44.2683;RPR=0;RUN=1;SAF=13;SAP=31.2394;SAR=0;SRF=19;SRP=44.2683;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:14:7,7:7:253:7:250:-18.6282,0,-18.9036 0/1:12:8,4:8:263:4:151:-10.3452,0,-20.3777 0/1:6:4,2:4:114:2:74:-5.2197,0,-8.737 dDocent_Contig_9772 177 . T C 63.7744 . AB=0.3;ABP=6.48466;AC=1;AF=0.166667;AN=6;AO=3;CIGAR=1X;DP=17;DPB=17;DPRA=2.85714;EPP=9.52472;EPPR=33.4109;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=117;QR=555;RO=14;RPL=3;RPP=9.52472;RPPR=33.4109;RPR=0;RUN=1;SAF=0;SAP=9.52472;SAR=3;SRF=0;SRP=33.4109;SRR=14;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:10:7,3:7:281:3:117:-7.89991,0,-22.6508 0/0:2:2,0:2:73:0:0:0,-0.60206,-6.93007 0/0:5:5,0:5:201:0:0:0,-1.50515,-18.4705 dDocent_Contig_9773 183 . T A 64.4601 . AB=0.3;ABP=6.48466;AC=1;AF=0.166667;AN=6;AO=3;CIGAR=1X;DP=37;DPB=37;DPRA=0.740741;EPP=9.52472;EPPR=76.8404;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=121;QR=1361;RO=34;RPL=3;RPP=9.52472;RPPR=76.8404;RPR=0;RUN=1;SAF=0;SAP=9.52472;SAR=3;SRF=0;SRP=76.8404;SRR=34;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:21:21,0:21:845:0:0:0,-6.32163,-76.3615 0/0:6:6,0:6:238:0:0:0,-1.80618,-21.7939 0/1:10:7,3:7:278:3:121:-8.2699,0,-22.3797 dDocent_Contig_9776 17 . G T 160.54 . AB=0.204082;ABP=40.2799;AC=3;AF=0.5;AN=6;AO=10;CIGAR=1X;DP=49;DPB=49;DPRA=0;EPP=24.725;EPPR=87.6977;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=3.46945e-18;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=391;QR=1541;RO=39;RPL=0;RPP=24.725;RPPR=87.6977;RPR=10;RUN=1;SAF=10;SAP=24.725;SAR=0;SRF=39;SRP=87.6977;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:26:21,5:21:826:5:197:-10.2787,0,-66.8279 0/1:7:5,2:5:200:2:79:-5.39042,0,-16.2718 0/1:16:13,3:13:515:3:115:-5.90762,0,-41.8769 dDocent_Contig_9777 49 . T C 314.037 . AB=0.325581;ABP=14.3727;AC=2;AF=0.333333;AN=6;AO=15;CIGAR=1X;DP=59;DPB=59;DPRA=0;EPP=35.5824;EPPR=98.5551;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=565;QR=1683;RO=44;RPL=0;RPP=35.5824;RPPR=98.5551;RPR=15;RUN=1;SAF=15;SAP=35.5824;SAR=0;SRF=44;SRP=98.5551;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:16:15,1:15:560:1:41:0,-0.721913,-46.6346 0/1:38:26,12:26:1008:12:447:-29.1223,0,-79.576 0/1:5:3,2:3:115:2:77:-5.80399,0,-9.21974 dDocent_Contig_9778 28 . T A 33.5566 . AB=0.1875;ABP=16.582;AC=2;AF=0.5;AN=4;AO=3;CIGAR=1X;DP=16;DPB=16;DPRA=0;EPP=9.52472;EPPR=31.2394;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=2;NUMALT=1;ODDS=0;PAIRED=0.666667;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=121;QR=522;RO=13;RPL=0;RPP=9.52472;RPPR=31.2394;RPR=3;RUN=1;SAF=3;SAP=9.52472;SAR=0;SRF=13;SRP=31.2394;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:9:7,2:7:283:2:80:-4.88252,0,-23.1343 ./.:.:.:.:.:.:.:. 0/1:7:6,1:6:239:1:41:-1.98736,0,-19.7772 dDocent_Contig_9779 16 . C A 94.8233 . AB=0.181818;ABP=32.0291;AC=2;AF=0.333333;AN=6;AO=6;CIGAR=1X;DP=37;DPB=37;DPRA=4.125;EPP=16.0391;EPPR=70.3259;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=235;QR=1243;RO=31;RPL=0;RPP=16.0391;RPPR=70.3259;RPR=6;RUN=1;SAF=6;SAP=16.0391;SAR=0;SRF=31;SRP=70.3259;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:4:4,0:4:155:0:0:0,-1.20412,-14.3233 0/1:11:10,1:10:402:1:40:-0.684349,0,-33.228 0/1:22:17,5:17:686:5:195:-11.2992,0,-55.4471 dDocent_Contig_9780 126 . T C 251.668 . AB=0.428571;ABP=4.25114;AC=2;AF=0.333333;AN=6;AO=12;CIGAR=1X;DP=35;DPB=35;DPRA=2;EPP=29.068;EPPR=52.9542;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=55.913;NS=3;NUMALT=1;ODDS=0;PAIRED=0;PAIREDR=0.73913;PAO=0;PQA=0;PQR=0;PRO=0;QA=405;QR=765;RO=23;RPL=0;RPP=29.068;RPPR=52.9542;RPR=12;RUN=1;SAF=0;SAP=29.068;SAR=12;SRF=0;SRP=52.9542;SRR=23;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:19:11,8:11:368:8:265:-18.454,0,-27.723 0/0:7:7,0:7:222:0:0:0,-2.10721,-20.2896 0/1:9:5,4:5:175:4:140:-10.2357,0,-9.33417 dDocent_Contig_9781 23 . G C 715.094 . AB=0.431373;ABP=5.09662;AC=4;AF=0.666667;AN=6;AO=25;CIGAR=1X;DP=54;DPB=54;DPRA=0;EPP=57.2971;EPPR=65.983;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=3.46945e-18;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=992;QR=1152;RO=29;RPL=0;RPP=57.2971;RPPR=65.983;RPR=25;RUN=1;SAF=25;SAP=57.2971;SAR=0;SRF=29;SRP=65.983;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:40:20,20:20:791:20:791:-59.4698,0,-59.4664 1/1:3:0,3:0:0:3:120:-11.1873,-0.90309,0 0/1:11:9,2:9:361:2:81:-4.3744,0,-29.5426 dDocent_Contig_9782 37 . A T 187.984 . AB=0.636364;ABP=4.78696;AC=1;AF=0.166667;AN=6;AO=7;CIGAR=1X;DP=67;DPB=67;DPRA=0.392857;EPP=18.2106;EPPR=133.299;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=262;QR=2320;RO=60;RPL=0;RPP=18.2106;RPPR=133.299;RPR=7;RUN=1;SAF=7;SAP=18.2106;SAR=0;SRF=60;SRP=133.299;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:34:34,0:34:1298:0:0:0,-10.235,-117.081 0/1:11:4,7:4:162:7:262:-20.6223,0,-11.6556 0/0:22:22,0:22:860:0:0:0,-6.62266,-77.7109 dDocent_Contig_9783 22 . A G 407.956 . AB=0.309091;ABP=20.4216;AC=3;AF=0.5;AN=6;AO=17;CIGAR=1X;DP=55;DPB=55;DPRA=0;EPP=39.9253;EPPR=85.5263;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=0;PAIREDR=0.815789;PAO=0;PQA=0;PQR=0;PRO=0;QA=686;QR=1500;RO=38;RPL=0;RPP=39.9253;RPPR=85.5263;RPR=17;RUN=1;SAF=17;SAP=39.9253;SAR=0;SRF=38;SRP=85.5263;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:29:20,9:20:809:9:364:-24.3949,0,-64.3966 0/1:7:3,4:3:120:4:162:-12.8597,0,-9.08048 0/1:19:15,4:15:571:4:160:-9.06386,0,-46.0008 dDocent_Contig_9784 106 . N T 255.288 . AB=0.652174;ABP=7.63648;AC=6;AF=1;AN=6;AO=20;CIGAR=2X3M;DP=28;DPB=28;DPRA=0;EPP=46.4397;EPPR=0;GTI=0;LEN=1;MEANALT=1.66667;MQM=16.75;MQMR=0;NS=3;NUMALT=2;ODDS=0;PAIRED=1;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=335;QR=0;RO=0;RPL=0;RPP=46.4397;RPPR=0;RPR=20;RUN=1;SAF=0;SAP=46.4397;SAR=20;SRF=0;SRP=0;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 1|1:7:0,3,4:0:0:3,4:102,72:-6.94398,-4.35485,-3.45176,-2.72761,0,-1.52349 1|1:5:0,0,5:0:0:0,5:0,90:-6.91116,-6.91116,-6.91116,-1.50515,-1.50515,0 1|1:16:0,5,11:0:0:5,11:163,173:-13.7051,-9.47459,-7.96944,-4.35805,0,-1.04672 dDocent_Contig_9785 53 . A G 340.464 . AB=0.153846;ABP=30.0702;AC=1;AF=0.166667;AN=6;AO=4;CIGAR=1X2M1X3M;DP=38;DPB=39.1429;DPRA=1.08333;EPP=11.6962;EPPR=9.52472;GTI=0;LEN=1;MEANALT=3;MQM=10.5;MQMR=29;NS=3;NUMALT=4;ODDS=0;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=42;QR=101;RO=3;RPL=0;RPP=11.6962;RPPR=9.52472;RPR=4;RUN=1;SAF=0;SAP=11.6962;SAR=4;SRF=0;SRP=9.52472;SRR=3;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|0:18:3,0,1,6,8:3:101:0,1,6,8:0,12,40,134:-6.84854,-7.75163,-14.3527,-7.23392,-13.8356,-13.5345,-7.35988,-13.959,-13.4467,-12.1528,0,-6.61339,-6.09945,-6.28331,-4.20515 0|0:12:0,7,0,2,2:0:0:7,0,2,2:276,0,14,36:-24.9321,-2.10721,0,-24.9321,-2.10721,-24.9321,-24.7726,-1.95498,-24.7726,-24.1705,-22.8509,-0.00860782,-22.8509,-22.7033,-22.2488 1|0:8:0,0,3,2,3:0:0:0,3,2,3:0,30,14,51:-3.86932,-3.86932,-3.86932,-2.85462,-2.85462,-1.95153,-3.69668,-3.69668,-2.7057,-3.09462,-0.990682,-0.990682,0,-0.833255,-0.0875917 dDocent_Contig_9786 29 . G C 376.384 . AB=0.348837;ABP=11.5447;AC=2;AF=0.333333;AN=6;AO=16;CIGAR=1X;DP=69;DPB=69;DPRA=0;EPP=37.7539;EPPR=118.098;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=634;QR=2105;RO=53;RPL=0;RPP=37.7539;RPPR=118.098;RPR=16;RUN=1;SAF=16;SAP=37.7539;SAR=0;SRF=53;SRP=118.098;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:26:25,1:25:981:1:41:0,-3.73221,-84.4868 0/1:18:10,8:10:398:8:313:-23.1152,0,-30.7612 0/1:25:18,7:18:726:7:280:-18.046,0,-58.14 dDocent_Contig_9787 22 . T C 392.86 . AB=0.298246;ABP=23.1631;AC=3;AF=0.5;AN=6;AO=17;CIGAR=1X;DP=57;DPB=57;DPRA=0;EPP=39.9253;EPPR=89.8692;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=3.46945e-18;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=676;QR=1610;RO=40;RPL=0;RPP=39.9253;RPPR=89.8692;RPR=17;RUN=1;SAF=17;SAP=39.9253;SAR=0;SRF=40;SRP=89.8692;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:34:29,5:29:1171:5:202:-8.32706,0,-95.4312 0/1:9:2,7:2:81:7:273:-22.2252,0,-4.97646 0/1:14:9,5:9:358:5:201:-14.2565,0,-28.3675 dDocent_Contig_9788 44 . G A 233.101 . AB=0.533333;ABP=3.15506;AC=1;AF=0.166667;AN=6;AO=9;CIGAR=1X;DP=48;DPB=48;DPRA=1.21429;EPP=22.5536;EPPR=87.6977;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=363;QR=1538;RO=39;RPL=0;RPP=22.5536;RPPR=87.6977;RPR=9;RUN=1;SAF=9;SAP=22.5536;SAR=0;SRF=39;SRP=87.6977;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:15:7,8:7:278:8:322:-24.8329,0,-20.8721 0/0:19:18,1:18:712:1:41:0,-1.625,-60.3106 0/0:14:14,0:14:548:0:0:0,-4.21442,-49.6631 dDocent_Contig_9789 107 . N A 66.4848 . AB=0;ABP=0;AC=2;AF=1;AN=2;AO=2;CIGAR=2X1I2M;DP=2;DPB=2.5;DPRA=0;EPP=7.35324;EPPR=0;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=0;NS=1;NUMALT=1;ODDS=5.99146;PAIRED=1;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=70;QR=0;RO=0;RPL=0;RPP=7.35324;RPPR=0;RPR=2;RUN=1;SAF=0;SAP=7.35324;SAR=2;SRF=0;SRP=0;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL .:.:.:.:.:.:.:. 1|1:2:0,2:0:0:2:70:-6.6474,-0.60206,0 .:.:.:.:.:.:.:. dDocent_Contig_9790 14 . T A 314.854 . AB=0.4;ABP=5.61607;AC=2;AF=0.333333;AN=6;AO=12;CIGAR=1X;DP=41;DPB=41;DPRA=1.36364;EPP=29.068;EPPR=65.983;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=481;QR=1026;RO=29;RPL=0;RPP=29.068;RPPR=65.983;RPR=12;RUN=1;SAF=12;SAP=29.068;SAR=0;SRF=29;SRP=65.983;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:11:11,0:11:404:0:0:0,-3.31133,-36.7028 0/1:15:12,3:12:422:3:119:-6.57956,0,-33.7961 0/1:15:6,9:6:200:9:362:-28.4287,0,-13.8086 dDocent_Contig_9791 7 . G A 30.5481 . AB=0.153846;ABP=30.0702;AC=3;AF=0.5;AN=6;AO=4;CIGAR=1X;DP=26;DPB=26;DPRA=0;EPP=11.6962;EPPR=50.7827;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=150;QR=705;RO=22;RPL=0;RPP=11.6962;RPPR=50.7827;RPR=4;RUN=1;SAF=4;SAP=11.6962;SAR=0;SRF=22;SRP=50.7827;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:9:7,2:7:216:2:72:-4.12737,0,-17.0316 0/1:5:4,1:4:136:1:39:-2.39141,0,-11.0688 0/1:12:11,1:11:353:1:39:-0.284205,0,-28.4592 dDocent_Contig_9793 24 . A G 33.8574 . AB=0.111111;ABP=97.59;AC=2;AF=0.333333;AN=6;AO=10;CIGAR=1X;DP=133;DPB=133;DPRA=0;EPP=24.725;EPPR=270.101;GTI=0;LEN=1;MEANALT=1;MQM=55.4;MQMR=59.9512;NS=3;NUMALT=1;ODDS=6.93889e-18;PAIRED=0.4;PAIREDR=0.861789;PAO=0;PQA=0;PQR=0;PRO=0;QA=392;QR=4920;RO=123;RPL=0;RPP=24.725;RPPR=270.101;RPR=10;RUN=1;SAF=10;SAP=24.725;SAR=0;SRF=123;SRP=270.101;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:61:59,2:59:2349:2:82:0,-10.5832,-203.776 0/1:22:19,3:19:764:3:115:-4.07795,0,-62.4595 0/1:50:45,5:45:1807:5:195:-2.80735,0,-147.78 dDocent_Contig_9794 53 . T G 36.3358 . AB=0.272727;ABP=7.94546;AC=1;AF=0.166667;AN=6;AO=3;CIGAR=1X;DP=29;DPB=29;DPRA=1.22222;EPP=9.52472;EPPR=59.4686;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=94;QR=1045;RO=26;RPL=3;RPP=9.52472;RPPR=59.4686;RPR=0;RUN=1;SAF=3;SAP=9.52472;SAR=0;SRF=26;SRP=59.4686;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:8:8,0:8:323:0:0:0,-2.40824,-29.4384 0/0:10:10,0:10:400:0:0:0,-3.0103,-36.3595 0/1:11:8,3:8:322:3:94:-5.45738,0,-26.037 dDocent_Contig_9795 23 . A C 507.2 . AB=0.197183;ABP=116.11;AC=3;AF=0.5;AN=6;AO=28;CIGAR=1X;DP=142;DPB=142;DPRA=0;EPP=63.8115;EPPR=248.387;GTI=0;LEN=1;MEANALT=1.33333;MQM=60;MQMR=59.2035;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=0.955752;PAO=0;PQA=0;PQR=0;PRO=0;QA=1089;QR=4465;RO=113;RPL=0;RPP=63.8115;RPPR=248.387;RPR=28;RUN=1;SAF=28;SAP=63.8115;SAR=0;SRF=113;SRP=248.387;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:24:19,5:19:769:5:202:-11.3371,0,-61.7633 0/1:90:72,17:72:2821:17:648:-31.4495,0,-226.51 0/1:28:22,6:22:875:6:239:-13.4562,0,-70.6344 dDocent_Contig_9796 91 . G A 375.854 . AB=0.472222;ABP=3.25157;AC=3;AF=0.5;AN=6;AO=17;CIGAR=1X;DP=36;DPB=36;DPRA=0;EPP=39.9253;EPPR=44.2683;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=588;QR=653;RO=19;RPL=17;RPP=39.9253;RPPR=44.2683;RPR=0;RUN=1;SAF=17;SAP=39.9253;SAR=0;SRF=19;SRP=44.2683;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:23:10,13:10:342:13:448:-33.7263,0,-24.1873 0/1:7:5,2:5:172:2:70:-4.54019,0,-13.7113 0/1:6:4,2:4:139:2:70:-4.84122,0,-11.0465 dDocent_Contig_9798 124 . A G 739.107 . AB=0.379747;ABP=12.9331;AC=3;AF=0.5;AN=6;AO=30;CIGAR=1X;DP=79;DPB=79;DPRA=0;EPP=68.1545;EPPR=109.412;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=1135;QR=1842;RO=49;RPL=0;RPP=68.1545;RPPR=109.412;RPR=30;RUN=1;SAF=0;SAP=68.1545;SAR=30;SRF=0;SRP=109.412;SRR=49;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:48:26,22:26:979:22:828:-60.3913,0,-73.9696 0/1:10:6,4:6:236:4:156:-11.407,0,-18.6021 0/1:21:17,4:17:627:4:151:-7.63533,0,-50.4335 dDocent_Contig_9800 33 . C A 641.676 . AB=0.611111;ABP=6.8707;AC=2;AF=0.333333;AN=6;AO=22;CIGAR=3X3M1X;DP=67;DPB=67;DPRA=0.580645;EPP=50.7827;EPPR=96.3836;GTI=0;LEN=1;MEANALT=1.5;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=863;QR=1704;RO=43;RPL=0;RPP=50.7827;RPPR=96.3836;RPR=22;RUN=1;SAF=22;SAP=50.7827;SAR=0;SRF=43;SRP=96.3836;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|0:31:30,0:30:1189:0:0:0,-9.0309,-106.888 0|1:6:2,4:2:80:4:158:-12.7938,0,-5.78539 0|1:30:11,18:11:435:18:705:-54.8967,0,-30.6143 dDocent_Contig_9801 15 . T A 260.487 . AB=0;ABP=0;AC=2;AF=0.333333;AN=6;AO=7;CIGAR=1X;DP=27;DPB=27;DPRA=0.7;EPP=18.2106;EPPR=46.4397;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=280;QR=803;RO=20;RPL=0;RPP=18.2106;RPPR=46.4397;RPR=7;RUN=1;SAF=7;SAP=18.2106;SAR=0;SRF=20;SRP=46.4397;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 1/1:7:0,7:0:0:7:280:-25.5716,-2.10721,0 0/0:7:7,0:7:285:0:0:0,-2.10721,-26.0244 0/0:13:13,0:13:518:0:0:0,-3.91339,-46.9662 dDocent_Contig_9803 12 . G T 817.423 . AB=0.56;ABP=4.57376;AC=2;AF=0.333333;AN=6;AO=28;CIGAR=1X;DP=60;DPB=60;DPRA=2.5;EPP=63.8115;EPPR=72.4974;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=58.75;NS=3;NUMALT=1;ODDS=3.46945e-18;PAIRED=0.642857;PAIREDR=0.96875;PAO=0;PQA=0;PQR=0;PRO=0;QA=1107;QR=1248;RO=32;RPL=0;RPP=63.8115;RPPR=72.4974;RPR=28;RUN=1;SAF=28;SAP=63.8115;SAR=0;SRF=32;SRP=72.4974;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:10:10,0:10:400:0:0:0,-3.0103,-36.3593 0/1:33:14,19:14:533:19:744:-57.3486,0,-37.2596 0/1:17:8,9:8:315:9:363:-27.9166,0,-23.597 dDocent_Contig_9804 42 . T A 119.976 . AB=0.150943;ABP=59.0998;AC=2;AF=0.333333;AN=6;AO=8;CIGAR=1X;DP=78;DPB=78;DPRA=1.06;EPP=20.3821;EPPR=155.013;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=321;QR=2709;RO=70;RPL=0;RPP=20.3821;RPPR=155.013;RPR=8;RUN=1;SAF=8;SAP=20.3821;SAR=0;SRF=70;SRP=155.013;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:29:23,6:23:870:6:243:-13.5183,0,-69.8718 0/1:24:22,2:22:859:2:78:-0.178581,0,-70.3986 0/0:25:25,0:25:980:0:0:0,-7.52575,-88.4942 dDocent_Contig_9805 8 . G A 653.552 . AB=0.293578;ABP=43.3519;AC=2;AF=0.333333;AN=6;AO=34;CIGAR=1X;DP=141;DPB=141;DPRA=0;EPP=76.8404;EPPR=235.358;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=1199;QR=3824;RO=107;RPL=0;RPP=76.8404;RPPR=235.358;RPR=34;RUN=1;SAF=34;SAP=76.8404;SAR=0;SRF=107;SRP=235.358;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:89:61,28:61:2170:28:993:-62.8809,0,-168.746 0/0:32:30,2:30:1087:2:76:0,-2.41829,-90.9154 0/1:20:16,4:16:567:4:130:-5.99719,0,-45.3341 dDocent_Contig_9806 10 . A G 476.847 . AB=0.308824;ABP=24.5973;AC=3;AF=0.5;AN=6;AO=21;CIGAR=1X;DP=68;DPB=68;DPRA=0;EPP=48.6112;EPPR=105.07;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=795;QR=1803;RO=47;RPL=0;RPP=48.6112;RPPR=105.07;RPR=21;RUN=1;SAF=21;SAP=48.6112;SAR=0;SRF=47;SRP=105.07;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:24:19,5:19:717:5:197:-10.8811,0,-57.6199 0/1:34:19,15:19:738:15:558:-40.3127,0,-56.5047 0/1:10:9,1:9:348:1:40:-0.985379,0,-28.6652 dDocent_Contig_9807 75 . G A 122.1 . AB=0.333333;ABP=7.35324;AC=1;AF=0.166667;AN=6;AO=8;CIGAR=1X;DP=46;DPB=46;DPRA=7.16667;EPP=20.3821;EPPR=85.5263;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=279;QR=1292;RO=38;RPL=8;RPP=20.3821;RPPR=85.5263;RPR=0;RUN=1;SAF=8;SAP=20.3821;SAR=0;SRF=38;SRP=85.5263;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:18:12,6:12:418:6:209:-13.7325,0,-32.5354 0/0:3:3,0:3:104:0:0:0,-0.90309,-9.70309 0/0:25:23,2:23:770:2:70:0,-0.878354,-62.9636 dDocent_Contig_9808 17 . T C 286.337 . AB=0.26;ABP=28.0257;AC=2;AF=0.333333;AN=6;AO=16;CIGAR=1X1M1X3M1X;DP=89;DPB=89;DPRA=0;EPP=37.7539;EPPR=159.356;GTI=0;LEN=1;MEANALT=1.33333;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=6.93889e-18;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=635;QR=2800;RO=72;RPL=0;RPP=37.7539;RPPR=159.356;RPR=16;RUN=1;SAF=16;SAP=37.7539;SAR=0;SRF=72;SRP=159.356;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|1:8:4,4:4:151:4:156:-12.0089,0,-11.5475 0|1:42:32,9:32:1241:9:359:-20.1473,0,-99.4657 0|0:39:36,3:36:1408:3:120:0,-0.552268,-115.803 dDocent_Contig_9810 16 . C G 443.263 . AB=0.483871;ABP=3.08035;AC=4;AF=0.666667;AN=6;AO=16;CIGAR=1X3M6D1M;DP=32;DPB=23.2727;DPRA=0;EPP=37.7539;EPPR=37.7539;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=1.73472e-18;PAIRED=0.8125;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=623;QR=630;RO=16;RPL=0;RPP=37.7539;RPPR=37.7539;RPR=16;RUN=1;SAF=16;SAP=37.7539;SAR=0;SRF=16;SRP=37.7539;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|1:22:10,12:10:396:12:466:-35.665,0,-29.3772 1|1:1:0,1:0:0:1:38:-3.79727,-0.30103,0 0|1:9:6,3:6:234:3:119:-8.38612,0,-18.7212 dDocent_Contig_9811 35 . G T 41.6938 . AB=0.230769;ABP=11.1951;AC=1;AF=0.166667;AN=6;AO=3;CIGAR=1X;DP=31;DPB=31;DPRA=1.44444;EPP=9.52472;EPPR=63.8115;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=103;QR=1118;RO=28;RPL=0;RPP=9.52472;RPPR=63.8115;RPR=3;RUN=1;SAF=3;SAP=9.52472;SAR=0;SRF=28;SRP=63.8115;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:13:10,3:10:401:3:103:-5.69222,0,-32.5361 0/0:11:11,0:11:435:0:0:0,-3.31133,-39.5044 0/0:7:7,0:7:282:0:0:0,-2.10721,-25.7526 dDocent_Contig_9813 63 . A G 144.651 . AB=0.185185;ABP=49.4959;AC=3;AF=0.5;AN=6;AO=10;CIGAR=1X1M2X;DP=54;DPB=54;DPRA=0;EPP=24.725;EPPR=98.5551;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=3.46945e-18;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=381;QR=1679;RO=44;RPL=10;RPP=24.725;RPPR=98.5551;RPR=0;RUN=1;SAF=10;SAP=24.725;SAR=0;SRF=44;SRP=98.5551;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|1:32:29,3:29:1112:3:116:-1.18458,0,-90.7393 0|1:6:3,3:3:118:3:113:-8.73312,0,-9.19671 0|1:16:12,4:12:449:4:152:-9.23328,0,-35.9389 dDocent_Contig_9815 122 . G A 444.773 . AB=0.159574;ABP=97.6311;AC=0;AF=0;AN=6;AO=15;CIGAR=1X3M1X2M1X;DP=94;DPB=94;DPRA=0;EPP=35.5824;EPPR=83.3548;GTI=0;LEN=1;MEANALT=4.33333;MQM=60;MQMR=60;NS=3;NUMALT=4;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=513;QR=1271;RO=37;RPL=0;RPP=35.5824;RPPR=83.3548;RPR=15;RUN=1;SAF=0;SAP=35.5824;SAR=15;SRF=0;SRP=83.3548;SRR=37;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|0:49:23,7,1,6,10:23:780:7,1,6,10:238,31,208,329:-19.6687,-7.28197,-68.4357,-24.1045,-68.055,-87.0605,-9.67941,-53.6335,-70.4527,-71.1345,0,-43.953,-60.7719,-46.3505,-60.2495 0|0:9:3,2,2,0,2:3:107:2,2,0,2:71,71,0,72:-4.97341,-0.0921722,-8.21233,-0.0921722,-3.03009,-8.21233,-5.8765,-8.81439,-8.81439,-14.5991,0,-2.93841,-2.93841,-8.72328,-8.12122 0|0:36:11,6,6,3,10:11:384:6,6,3,10:204,200,104,350:-25.1704,-11.9348,-41.3657,-12.2973,-26.9875,-41.7274,-20.0278,-34.7183,-35.0802,-50.3621,0,-14.6927,-15.0551,-22.7858,-28.2294 dDocent_Contig_9818 133 . C T 30.3477 . AB=0.138889;ABP=43.7857;AC=3;AF=0.5;AN=6;AO=5;CIGAR=1X;DP=36;DPB=36;DPRA=0;EPP=13.8677;EPPR=70.3259;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=176;QR=1036;RO=31;RPL=0;RPP=13.8677;RPPR=70.3259;RPR=5;RUN=1;SAF=0;SAP=13.8677;SAR=5;SRF=0;SRP=70.3259;SRR=31;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:19:17,2:17:576:2:71:-1.02249,0,-46.4401 0/1:11:10,1:10:323:1:35:-0.187299,0,-26.0725 0/1:6:4,2:4:137:2:70:-4.84115,0,-10.862 dDocent_Contig_9819 61 . A C 300.651 . AB=0.309524;ABP=16.2459;AC=3;AF=0.5;AN=6;AO=13;CIGAR=1X;DP=42;DPB=42;DPRA=0;EPP=31.2394;EPPR=65.983;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=523;QR=1152;RO=29;RPL=13;RPP=31.2394;RPPR=65.983;RPR=0;RUN=1;SAF=13;SAP=31.2394;SAR=0;SRF=29;SRP=65.983;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:22:17,5:17:670:5:202:-11.9388,0,-54.0089 0/1:2:1,1:1:40:1:40:-3.39362,0,-3.39362 0/1:18:11,7:11:442:7:281:-20.244,0,-34.7169 dDocent_Contig_9820 15 . G T 50.3161 . AB=0.133333;ABP=55.5599;AC=2;AF=0.333333;AN=6;AO=7;CIGAR=1X;DP=75;DPB=75;DPRA=0;EPP=18.2106;EPPR=150.67;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=278;QR=2670;RO=68;RPL=0;RPP=18.2106;RPPR=150.67;RPR=7;RUN=1;SAF=7;SAP=18.2106;SAR=0;SRF=68;SRP=150.67;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:9:7,2:7:268:2:79:-4.78836,0,-21.7687 0/1:36:32,4:32:1264:4:158:-3.7634,0,-103.197 0/0:30:29,1:29:1138:1:41:0,-4.93633,-98.6149 dDocent_Contig_9822 7 . G C 502.429 . AB=0.210938;ABP=95.9086;AC=2;AF=0.333333;AN=6;AO=27;CIGAR=1X;DP=141;DPB=141;DPRA=4.92308;EPP=61.6401;EPPR=241.872;GTI=0;LEN=1;MEANALT=2.5;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=1009;QR=3619;RO=110;RPL=0;RPP=61.6401;RPPR=241.872;RPR=27;RUN=1;SAF=27;SAP=61.6401;SAR=0;SRF=110;SRP=241.872;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:87:69,16:69:2316:16:585:-27.2127,0,-182.914 0/0:13:13,0:13:446:0:0:0,-3.91339,-40.4605 0/1:41:28,11:28:857:11:424:-26.5531,0,-65.4669 dDocent_Contig_9823 27 . C A 502.068 . AB=0.297297;ABP=29.4201;AC=3;AF=0.5;AN=6;AO=22;CIGAR=1X;DP=74;DPB=74;DPRA=0;EPP=50.7827;EPPR=115.927;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=855;QR=2118;RO=52;RPL=0;RPP=50.7827;RPPR=115.927;RPR=22;RUN=1;SAF=22;SAP=50.7827;SAR=0;SRF=52;SRP=115.927;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:19:15,4:15:614:4:141:-7.30885,0,-49.8769 0/1:26:16,10:16:652:10:389:-27.5311,0,-51.186 0/1:29:21,8:21:852:8:325:-20.8898,0,-68.2586 dDocent_Contig_9824 7 . G T 32.9832 . AB=0.5;ABP=3.0103;AC=1;AF=0.166667;AN=6;AO=3;CIGAR=1X;DP=26;DPB=26;DPRA=0.5;EPP=9.52472;EPPR=50.7827;GTI=0;LEN=1;MEANALT=1.5;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=72;QR=748;RO=22;RPL=0;RPP=9.52472;RPPR=50.7827;RPR=3;RUN=1;SAF=3;SAP=9.52472;SAR=0;SRF=22;SRP=50.7827;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:9:8,1:8:275:1:11:0,-1.60927,-23.9826 0/0:13:13,0:13:446:0:0:0,-3.91339,-40.457 0/1:4:1,2:1:27:2:61:-4.58905,0,-1.51173 dDocent_Contig_9825 10 . G A 332.289 . AB=0.0941176;ABP=124.638;AC=2;AF=0.333333;AN=6;AO=8;CIGAR=1X1M1D9M;DP=85;DPB=83.1667;DPRA=0;EPP=20.3821;EPPR=139.813;GTI=0;LEN=1;MEANALT=1.66667;MQM=60;MQMR=60;NS=3;NUMALT=2;ODDS=6.93889e-18;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=319;QR=2401;RO=63;RPL=0;RPP=20.3821;RPPR=139.813;RPR=8;RUN=1;SAF=8;SAP=20.3821;SAR=0;SRF=63;SRP=139.813;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|1:34:31,3,0:31:1184:3,0:117,0:-0.675192,0,-96.6209,-10.0071,-97.524,-107.142 0|0:26:14,1,11:14:537:1,11:41,405:-28.8569,-29.6838,-73.4665,0,-40.6649,-40.7394 0|1:25:18,4,3:18:680:4,3:161,101:-7.88805,0,-54.5653,-5.15348,-47.5941,-59.9646 dDocent_Contig_9827 29 . G T 131.115 . AB=0.3;ABP=9.95901;AC=2;AF=0.333333;AN=6;AO=6;CIGAR=1X;DP=31;DPB=31;DPRA=0.909091;EPP=16.0391;EPPR=57.2971;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=0;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=243;QR=1012;RO=25;RPL=0;RPP=16.0391;RPPR=57.2971;RPR=6;RUN=1;SAF=6;SAP=16.0391;SAR=0;SRF=25;SRP=57.2971;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:7:5,2:5:204:2:82:-5.67247,0,-16.6368 0/0:11:11,0:11:442:0:0:0,-3.31133,-40.1343 0/1:13:9,4:9:366:4:161:-10.9619,0,-29.3918 dDocent_Contig_9828 57 . A G 81.6322 . AB=0;ABP=0;AC=2;AF=0.333333;AN=6;AO=2;CIGAR=1X;DP=33;DPB=33;DPRA=0.129032;EPP=7.35324;EPPR=70.3259;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=81;QR=1204;RO=31;RPL=2;RPP=7.35324;RPPR=70.3259;RPR=0;RUN=1;SAF=2;SAP=7.35324;SAR=0;SRF=31;SRP=70.3259;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 1/1:2:0,2:0:0:2:81:-7.68573,-0.60206,0 0/0:18:18,0:18:697:0:0:0,-5.41854,-63.0522 0/0:13:13,0:13:507:0:0:0,-3.91339,-45.974 dDocent_Contig_9829 24 . G A 160.102 . AB=0.153846;ABP=84.19;AC=3;AF=0.5;AN=6;AO=12;CIGAR=1X;DP=78;DPB=78;DPRA=0;EPP=29.068;EPPR=146.327;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=0.909091;PAO=0;PQA=0;PQR=0;PRO=0;QA=470;QR=2600;RO=66;RPL=0;RPP=29.068;RPPR=146.327;RPR=12;RUN=1;SAF=12;SAP=29.068;SAR=0;SRF=66;SRP=146.327;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:37:29,8:29:1119:8:314:-17.4861,0,-89.8469 0/1:32:29,3:29:1164:3:117:-1.27633,0,-95.4092 0/1:9:8,1:8:317:1:39:-1.18729,0,-26.1862 dDocent_Contig_9830 82 . C T 75.9744 . AB=0.277778;ABP=10.7311;AC=1;AF=0.25;AN=4;AO=5;CIGAR=1X;DP=24;DPB=24;DPRA=3;EPP=13.8677;EPPR=44.2683;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=2;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=160;QR=659;RO=19;RPL=5;RPP=13.8677;RPPR=44.2683;RPR=0;RUN=1;SAF=5;SAP=13.8677;SAR=0;SRF=19;SRP=44.2683;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:18:13,5:13:449:5:160:-9.29638,0,-35.3221 ./.:.:.:.:.:.:.:. 0/0:6:6,0:6:210:0:0:0,-1.80618,-19.2425 dDocent_Contig_9831 7 . G A 271.217 . AB=0.227273;ABP=45.6501;AC=2;AF=0.333333;AN=6;AO=22;CIGAR=1X;DP=178;DPB=178;DPRA=0;EPP=50.7827;EPPR=333.074;GTI=0;LEN=1;MEANALT=2;MQM=52.6364;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=0.5;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=825;QR=5028;RO=152;RPL=0;RPP=50.7827;RPPR=333.074;RPR=22;RUN=1;SAF=22;SAP=50.7827;SAR=0;SRF=152;SRP=333.074;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:112:103,7:103:3371:7:272:0,-8.90671,-279.226 0/1:15:13,2:13:476:2:77:-2.43855,0,-38.6611 0/1:51:36,13:36:1181:13:476:-28.1562,0,-91.6846 dDocent_Contig_9832 18 . T A 376.599 . AB=0.357143;ABP=10.4553;AC=3;AF=0.5;AN=6;AO=15;CIGAR=1X;DP=42;DPB=42;DPRA=0;EPP=4.31318;EPPR=61.6401;GTI=0;LEN=1;MEANALT=1;MQM=58.7333;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=0;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=591;QR=1082;RO=27;RPL=0;RPP=35.5824;RPPR=61.6401;RPR=15;RUN=1;SAF=9;SAP=4.31318;SAR=6;SRF=27;SRP=61.6401;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:17:11,6:11:448:6:230:-15.9455,0,-35.5585 0/1:13:5,8:5:194:8:320:-25.2332,0,-13.9177 0/1:12:11,1:11:440:1:41:-0.446251,0,-36.3423 dDocent_Contig_9833 98 . N A 133.304 . AB=0;ABP=0;AC=6;AF=1;AN=6;AO=4;CIGAR=1X;DP=4;DPB=4;DPRA=0;EPP=11.6962;EPPR=0;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=0;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=132;QR=0;RO=0;RPL=4;RPP=11.6962;RPPR=0;RPR=0;RUN=1;SAF=4;SAP=11.6962;SAR=0;SRF=0;SRP=0;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 1/1:1:0,1:0:0:1:29:-2.89966,-0.30103,0 1/1:2:0,2:0:0:2:69:-6.55266,-0.60206,0 1/1:1:0,1:0:0:1:34:-3.39891,-0.30103,0 dDocent_Contig_9834 37 . G A 71.6971 . AB=0.100559;ABP=251.08;AC=2;AF=0.333333;AN=6;AO=74;CIGAR=1X;DP=921;DPB=921;DPRA=0;EPP=138.698;EPPR=1835.73;GTI=0;LEN=1;MEANALT=1.66667;MQM=58.2162;MQMR=59.9597;NS=3;NUMALT=1;ODDS=0;PAIRED=0.945946;PAIREDR=0.99763;PAO=0;PQA=0;PQR=0;PRO=0;QA=2871;QR=32841;RO=844;RPL=0;RPP=163.699;RPPR=1835.73;RPR=74;RUN=1;SAF=71;SAP=138.698;SAR=3;SRF=844;SRP=1835.73;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:90:80,8:80:3139:8:323:-2.6319,0,-255.805 0/0:742:685,56:685:26587:56:2165:0,-34.1296,-2201.33 0/1:89:79,10:79:3115:10:383:-8.02815,0,-253.654 dDocent_Contig_9835 52 . C T 145.306 . AB=0.269231;ABP=15.0369;AC=2;AF=0.333333;AN=6;AO=7;CIGAR=1X;DP=29;DPB=29;DPRA=4.33333;EPP=18.2106;EPPR=50.7827;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=1.73472e-18;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=279;QR=887;RO=22;RPL=7;RPP=18.2106;RPPR=50.7827;RPR=0;RUN=1;SAF=7;SAP=18.2106;SAR=0;SRF=22;SRP=50.7827;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:11:8,3:8:324:3:121:-7.96887,0,-26.2175 0/0:3:3,0:3:122:0:0:0,-0.90309,-11.3725 0/1:15:11,4:11:441:4:158:-10.0844,0,-35.5288 dDocent_Contig_9837 76 . G A 3000.3 . AB=0.368644;ABP=38.3795;AC=5;AF=0.833333;AN=6;AO=87;CIGAR=1X4M;DP=236;DPB=236;DPRA=0;EPP=191.928;EPPR=150.67;GTI=0;LEN=1;MEANALT=2;MQM=60;MQMR=60;NS=3;NUMALT=2;ODDS=5.55112e-17;PAIRED=1;PAIREDR=0.985294;PAO=0;PQA=0;PQR=0;PRO=0;QA=3314;QR=2544;RO=68;RPL=87;RPP=191.928;RPPR=150.67;RPR=0;RUN=1;SAF=87;SAP=191.928;SAR=0;SRF=68;SRP=150.67;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 1|1:189:55,67,67:55:2067:67,67:2534,2543:-230.353,-39.1882,-188.351,-38.3909,0,-187.555 1|1:8:0,5,3:0:0:5,3:188,118:-25.4913,-10.0985,-8.59334,-15.7793,0,-14.8762 0|1:39:13,9,17:13:477:9,17:323,653:-49.7085,-27.2844,-63.5602,0,-12.6543,-33.8797 dDocent_Contig_9838 94 . G T 140.534 . AB=0.428571;ABP=3.63072;AC=1;AF=0.166667;AN=6;AO=6;CIGAR=1X;DP=23;DPB=23;DPRA=3.11111;EPP=16.0391;EPPR=39.9253;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=216;QR=604;RO=17;RPL=6;RPP=16.0391;RPPR=39.9253;RPR=0;RUN=1;SAF=6;SAP=16.0391;SAR=0;SRF=17;SRP=39.9253;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:14:8,6:8:282:6:216:-15.5761,0,-21.5069 0/0:6:6,0:6:215:0:0:0,-1.80618,-19.6992 0/0:3:3,0:3:107:0:0:0,-0.90309,-9.98217 dDocent_Contig_9840 27 . T A 283.504 . AB=0.177083;ABP=89.9597;AC=2;AF=0.5;AN=4;AO=17;CIGAR=2X;DP=96;DPB=96;DPRA=0;EPP=39.9253;EPPR=174.557;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=2;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=0.936709;PAO=0;PQA=0;PQR=0;PRO=0;QA=669;QR=3156;RO=79;RPL=0;RPP=39.9253;RPPR=174.557;RPR=17;RUN=1;SAF=17;SAP=39.9253;SAR=0;SRF=79;SRP=174.557;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|1:58:45,13:45:1788:13:510:-28.7845,0,-143.677 .:.:.:.:.:.:.:. 0|1:38:34,4:34:1368:4:159:-3.25282,0,-111.937 dDocent_Contig_9842 64 . A G 258.214 . AB=0.166667;ABP=60.9162;AC=4;AF=0.666667;AN=6;AO=10;CIGAR=1X1M;DP=60;DPB=60;DPRA=0;EPP=24.725;EPPR=98.5551;GTI=0;LEN=1;MEANALT=1.66667;MQM=60;MQMR=60;NS=3;NUMALT=2;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=371;QR=1732;RO=44;RPL=10;RPP=24.725;RPPR=98.5551;RPR=0;RUN=1;SAF=10;SAP=24.725;SAR=0;SRF=44;SRP=98.5551;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|1:32:27,2,3:27:1050:2,3:78,123:-2.03632,-3.76046,-89.4176,0,-79.8654,-85.374 0|1:20:17,0,3:17:682:0,3:0,119:-5.07441,-10.1919,-66.3893,0,-56.5943,-55.6912 1|1:8:0,4,4:0:0:4,4:162,129:-24.1173,-10.7178,-9.51369,-13.7628,0,-12.5587 dDocent_Contig_9843 81 . T C 294.516 . AB=0.555556;ABP=3.49285;AC=3;AF=0.5;AN=6;AO=14;CIGAR=1X;DP=48;DPB=48;DPRA=0;EPP=33.4109;EPPR=76.8404;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=465;QR=1153;RO=34;RPL=14;RPP=33.4109;RPPR=76.8404;RPR=0;RUN=1;SAF=14;SAP=33.4109;SAR=0;SRF=34;SRP=76.8404;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:28:26,2:26:879:2:68:0,-1.97091,-72.9627 1/1:2:0,2:0:0:2:69:-6.55266,-0.60206,0 0/1:18:8,10:8:274:10:328:-24.4215,0,-19.5746 dDocent_Contig_9844 10 . A T 32.6535 . AB=0.25;ABP=7.35324;AC=1;AF=0.166667;AN=6;AO=2;CIGAR=1X;DP=29;DPB=29;DPRA=0.761905;EPP=7.35324;EPPR=61.6401;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=79;QR=1019;RO=27;RPL=0;RPP=7.35324;RPPR=61.6401;RPR=2;RUN=1;SAF=2;SAP=7.35324;SAR=0;SRF=27;SRP=61.6401;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:15:15,0:15:557:0:0:0,-4.51545,-50.4575 0/0:6:6,0:6:228:0:0:0,-1.80618,-20.8841 0/1:8:6,2:6:234:2:79:-5.089,0,-19.0222 dDocent_Contig_9845 30 . C A 343.73 . AB=0.309524;ABP=16.2459;AC=3;AF=0.5;AN=6;AO=13;CIGAR=1X2M;DP=48;DPB=48;DPRA=0;EPP=31.2394;EPPR=63.8115;GTI=0;LEN=1;MEANALT=1.5;MQM=60;MQMR=60;NS=3;NUMALT=2;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=498;QR=1099;RO=28;RPL=0;RPP=31.2394;RPPR=63.8115;RPR=13;RUN=1;SAF=13;SAP=31.2394;SAR=0;SRF=28;SRP=63.8115;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|1:10:7,0,3:7:277:0,3:0,116:-7.80598,-9.91319,-32.7162,0,-23.192,-22.2889 0|1:32:17,5,10:17:665:5,10:198,382:-26.2103,-15.0268,-68.1999,0,-38.3713,-51.6584 0|1:6:4,2,0:4:157:2,0:81,0:-5.87955,0,-12.7026,-7.08367,-13.3047,-19.988 dDocent_Contig_9847 124 . A C 46.9759 . AB=0.266667;ABP=10.1038;AC=2;AF=0.333333;AN=6;AO=4;CIGAR=1X;DP=27;DPB=27;DPRA=0.625;EPP=11.6962;EPPR=52.9542;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=134;QR=795;RO=23;RPL=0;RPP=11.6962;RPPR=52.9542;RPR=4;RUN=1;SAF=0;SAP=11.6962;SAR=4;SRF=0;SRP=52.9542;SRR=23;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:12:12,0:12:414:0:0:0,-3.61236,-37.5914 0/1:10:8,2:8:276:2:65:-3.16299,0,-22.1654 0/1:5:3,2:3:105:2:69:-5.04751,0,-8.29101 dDocent_Contig_9849 15 . C A 265.053 . AB=0.263158;ABP=21.525;AC=2;AF=0.333333;AN=6;AO=10;CIGAR=1X3M13D3M1X;DP=49;DPB=42.8095;DPRA=0;EPP=24.725;EPPR=76.8404;GTI=0;LEN=1;MEANALT=1.5;MQM=60;MQMR=60;NS=3;NUMALT=2;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=384;QR=1340;RO=34;RPL=0;RPP=24.725;RPPR=76.8404;RPR=10;RUN=1;SAF=10;SAP=24.725;SAR=0;SRF=34;SRP=76.8404;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|0:11:8,0,3:8:319:0,3:0,121:-7.96887,-10.3771,-36.6453,0,-26.6698,-25.7667 0|1:11:5,4,2:5:197:4,2:154,82:-11.1221,0,-14.9924,-5.85082,-9.4238,-21.4615 0|1:27:21,6,0:21:824:6,0:230,0:-12.9372,0,-66.3513,-19.2588,-68.1575,-87.0313 dDocent_Contig_9852 23 . G T 249.556 . AB=0.294118;ABP=15.5282;AC=2;AF=0.333333;AN=6;AO=10;CIGAR=1X;DP=46;DPB=46;DPRA=1.41667;EPP=24.725;EPPR=79.0118;GTI=0;LEN=1;MEANALT=1.5;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=408;QR=1404;RO=35;RPL=0;RPP=24.725;RPPR=79.0118;RPR=10;RUN=1;SAF=10;SAP=24.725;SAR=0;SRF=35;SRP=79.0118;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:23:14,9:14:553:9:367:-26.4716,0,-43.1871 0/0:12:12,0:12:488:0:0:0,-3.61236,-44.2715 0/1:11:9,1:9:363:1:41:-0.679755,0,-29.6236 dDocent_Contig_9854 17 . C A 345.242 . AB=0.154839;ABP=163.405;AC=2;AF=0.333333;AN=6;AO=24;CIGAR=1X;DP=187;DPB=187;DPRA=2.42188;EPP=55.1256;EPPR=356.96;GTI=0;LEN=1;MEANALT=1;MQM=59.4167;MQMR=59.9018;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=934;QR=6508;RO=163;RPL=0;RPP=55.1256;RPPR=356.96;RPR=24;RUN=1;SAF=24;SAP=55.1256;SAR=0;SRF=163;SRP=356.96;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:112:98,14:98:3913:14:540:-15.2173,0,-318.408 0/1:43:33,10:33:1316:10:394:-22.8298,0,-105.764 0/0:32:32,0:32:1279:0:0:0,-9.63296,-115.373 dDocent_Contig_9855 12 . T G 502.805 . AB=0.206897;ABP=89.5697;AC=2;AF=0.333333;AN=6;AO=25;CIGAR=1X;DP=130;DPB=130;DPRA=0;EPP=57.2971;EPPR=231.015;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=1019;QR=4164;RO=105;RPL=0;RPP=57.2971;RPPR=231.015;RPR=25;RUN=1;SAF=25;SAP=57.2971;SAR=0;SRF=105;SRP=231.015;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:72:59,13:59:2329:13:532:-26.552,0,-188.09 0/0:14:13,1:13:497:1:41:0,-0.119853,-40.9768 0/1:44:33,11:33:1338:11:446:-27.2503,0,-107.429 dDocent_Contig_9856 107 . N T 519.465 . AB=0;ABP=0;AC=4;AF=1;AN=4;AO=18;CIGAR=1X;DP=18;DPB=18;DPRA=0;EPP=42.0968;EPPR=0;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=0;NS=2;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=567;QR=0;RO=0;RPL=0;RPP=42.0968;RPPR=0;RPR=18;RUN=1;SAF=0;SAP=42.0968;SAR=18;SRF=0;SRP=0;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 1/1:9:0,9:0:0:9:303:-27.5976,-2.70927,0 ./.:.:.:.:.:.:.:. 1/1:9:0,9:0:0:9:264:-24.0479,-2.70927,0 dDocent_Contig_9857 17 . C T 507.872 . AB=0.372549;ABP=10.206;AC=2;AF=0.333333;AN=6;AO=19;CIGAR=1X;DP=69;DPB=69;DPRA=1.41667;EPP=44.2683;EPPR=111.584;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=3.46945e-18;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=766;QR=1995;RO=50;RPL=0;RPP=44.2683;RPPR=111.584;RPR=19;RUN=1;SAF=19;SAP=44.2683;SAR=0;SRF=50;SRP=111.584;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:38:26,12:26:1023:12:484:-32.4714,0,-80.9229 0/0:18:18,0:18:727:0:0:0,-5.41854,-65.7548 0/1:13:6,7:6:245:7:282:-21.8387,0,-18.5161 dDocent_Contig_9858 107 . N T 77.4306 . AB=0;ABP=0;AC=4;AF=1;AN=4;AO=4;CIGAR=1X;DP=4;DPB=4;DPRA=0;EPP=11.6962;EPPR=0;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=0;NS=2;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=78;QR=0;RO=0;RPL=0;RPP=11.6962;RPPR=0;RPR=4;RUN=1;SAF=0;SAP=11.6962;SAR=4;SRF=0;SRP=0;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 1/1:3:0,3:0:0:3:54:-5.03992,-0.90309,0 1/1:1:0,1:0:0:1:24:-2.39989,-0.30103,0 ./.:.:.:.:.:.:.:. dDocent_Contig_9859 15 . A T 475.47 . AB=0.22;ABP=71.1077;AC=2;AF=0.333333;AN=6;AO=22;CIGAR=1X;DP=104;DPB=104;DPRA=12.5;EPP=50.7827;EPPR=181.071;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=894;QR=3297;RO=82;RPL=0;RPP=50.7827;RPPR=181.071;RPR=22;RUN=1;SAF=22;SAP=50.7827;SAR=0;SRF=82;SRP=181.071;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:63:47,16:47:1902:16:649:-39.7784,0,-152.412 0/0:4:4,0:4:159:0:0:0,-1.20412,-14.6923 0/1:37:31,6:31:1236:6:245:-11.2914,0,-100.374 dDocent_Contig_9860 52 . C T 271.469 . AB=0.317073;ABP=14.9269;AC=2;AF=0.333333;AN=6;AO=13;CIGAR=1X;DP=74;DPB=74;DPRA=0.621212;EPP=31.2394;EPPR=135.47;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=470;QR=2237;RO=61;RPL=13;RPP=31.2394;RPPR=135.47;RPR=0;RUN=1;SAF=13;SAP=31.2394;SAR=0;SRF=61;SRP=135.47;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:33:33,0:33:1213:0:0:0,-9.93399,-109.475 0/1:7:4,3:4:141:3:115:-8.61768,0,-10.9268 0/1:34:24,10:24:883:10:355:-22.0521,0,-69.5574 dDocent_Contig_9861 23 . A T 1654.59 . AB=0.683544;ABP=26.1269;AC=3;AF=0.5;AN=6;AO=54;CIGAR=1X;DP=79;DPB=79;DPRA=0;EPP=120.27;EPPR=57.2971;GTI=0;LEN=1;MEANALT=1;MQM=57.6852;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=0.907407;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=2185;QR=998;RO=25;RPL=0;RPP=120.27;RPPR=57.2971;RPR=54;RUN=1;SAF=54;SAP=120.27;SAR=0;SRF=25;SRP=57.2971;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:50:8,42:8:323:42:1704:-135.67,0,-14.3871 0/1:9:4,5:4:158:5:202:-15.8526,0,-11.8901 0/1:20:13,7:13:517:7:279:-19.4597,0,-40.8543 dDocent_Contig_9862 20 . C T 212.63 . AB=0.22449;ABP=35.3165;AC=2;AF=0.333333;AN=6;AO=11;CIGAR=1X;DP=58;DPB=58;DPRA=2.72222;EPP=26.8965;EPPR=105.07;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=431;QR=1878;RO=47;RPL=0;RPP=26.8965;RPPR=105.07;RPR=11;RUN=1;SAF=11;SAP=26.8965;SAR=0;SRF=47;SRP=105.07;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:26:18,8:18:732:8:311:-20.5214,0,-58.3772 0/0:9:9,0:9:352:0:0:0,-2.70927,-32.0368 0/1:23:20,3:20:794:3:120:-4.26362,0,-64.8484 dDocent_Contig_9863 9 . T A 36.0556 . AB=0.375;ABP=4.09604;AC=1;AF=0.166667;AN=6;AO=8;CIGAR=1X2M;DP=91;DPB=91;DPRA=1.47826;EPP=20.3821;EPPR=174.557;GTI=0;LEN=1;MEANALT=1.5;MQM=30.125;MQMR=60;NS=3;NUMALT=2;ODDS=0;PAIRED=0;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=237;QR=2919;RO=79;RPL=0;RPP=20.3821;RPPR=174.557;RPR=8;RUN=1;SAF=8;SAP=20.3821;SAR=0;SRF=79;SRP=174.557;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|0:60:51,4,5:51:1899:4,5:157,144:0,-7.97461,-162.289,-5.09848,-153.261,-159.134 0|1:8:5,0,3:5:189:0,3:0,93:-5.42936,-6.93451,-22.4858,0,-15.8679,-14.9648 0|0:23:23,0,0:23:831:0,0:0,0:0,-6.92369,-75.0993,-6.92369,-75.0993,-75.0993 dDocent_Contig_9864 101 . N A 72.159 . AB=0;ABP=0;AC=2;AF=1;AN=2;AO=2;CIGAR=3X2I3X1I1X;DP=2;DPB=2.85714;DPRA=0;EPP=7.35324;EPPR=0;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=0;NS=1;NUMALT=1;ODDS=5.99146;PAIRED=1;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=76;QR=0;RO=0;RPL=0;RPP=7.35324;RPPR=0;RPR=2;RUN=1;SAF=2;SAP=7.35324;SAR=0;SRF=0;SRP=0;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 1|1:2:0,2:0:0:2:76:-7.21481,-0.60206,0 .:.:.:.:.:.:.:. .:.:.:.:.:.:.:. dDocent_Contig_9865 21 . C A 336.921 . AB=0.333333;ABP=13.8677;AC=2;AF=0.333333;AN=6;AO=16;CIGAR=1X;DP=64;DPB=64;DPRA=0;EPP=37.7539;EPPR=107.241;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=597;QR=1811;RO=48;RPL=0;RPP=37.7539;RPPR=107.241;RPR=16;RUN=1;SAF=16;SAP=37.7539;SAR=0;SRF=48;SRP=107.241;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:40:27,13:27:1042:13:474:-30.9404,0,-82.0302 0/1:5:3,2:3:112:2:82:-6.27453,0,-8.93976 0/0:19:18,1:18:657:1:41:0,-1.625,-55.3467 dDocent_Contig_9866 27 . A G 248.046 . AB=0.222222;ABP=39.2015;AC=2;AF=0.333333;AN=6;AO=12;CIGAR=1X;DP=59;DPB=59;DPRA=5.4;EPP=29.068;EPPR=105.07;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=487;QR=1882;RO=47;RPL=0;RPP=29.068;RPPR=105.07;RPR=12;RUN=1;SAF=12;SAP=29.068;SAR=0;SRF=47;SRP=105.07;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:5:5,0:5:204:0:0:0,-1.50515,-18.744 0/1:26:18,8:18:715:8:327:-21.9733,0,-56.8497 0/1:28:24,4:24:963:4:160:-6.35408,0,-78.5417 dDocent_Contig_9868 12 . G T 6644.25 . AB=0.0707965;ABP=183.819;AC=0;AF=0;AN=6;AO=8;CIGAR=1M1X1M1X;DP=319;DPB=319;DPRA=0;EPP=20.3821;EPPR=126.784;GTI=0;LEN=1;MEANALT=4;MQM=60;MQMR=60;NS=3;NUMALT=3;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=310;QR=2166;RO=57;RPL=0;RPP=20.3821;RPPR=126.784;RPR=8;RUN=1;SAF=8;SAP=20.3821;SAR=0;SRF=57;SRP=126.784;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|0:113:33,8,10,61:33:1255:8,10,61:310,369,2270:-175.812,-160.278,-260.797,-155.577,-233.035,-255.493,0,-77.4584,-72.7587,-84.5636 0|0:97:14,0,6,73:14:525:0,6,73:0,217,2800:-225.566,-229.78,-272.776,-212.077,-255.072,-253.266,0,-42.9946,-25.2946,-21.0194 0|0:109:10,0,10,89:10:386:0,10,89:0,379,3318:-268.538,-271.548,-303.249,-240.477,-272.178,-269.168,0,-31.7034,-0.636669,-4.91169 dDocent_Contig_9869 18 . T C 41.3008 . AB=0.166667;ABP=20.3821;AC=1;AF=0.166667;AN=6;AO=3;CIGAR=1X;DP=44;DPB=44;DPRA=1.38462;EPP=9.52472;EPPR=92.0407;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=122;QR=1655;RO=41;RPL=0;RPP=9.52472;RPPR=92.0407;RPR=3;RUN=1;SAF=3;SAP=9.52472;SAR=0;SRF=41;SRP=92.0407;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:17:17,0:17:692:0:0:0,-5.11751,-62.6084 0/0:9:9,0:9:365:0:0:0,-2.70927,-33.2151 0/1:18:15,3:15:598:3:122:-5.95395,0,-48.7383 dDocent_Contig_9871 101 . N C 46.8821 . AB=0;ABP=0;AC=2;AF=1;AN=2;AO=2;CIGAR=3X3I5X;DP=2;DPB=2.75;DPRA=0;EPP=7.35324;EPPR=0;GTI=0;LEN=1;MEANALT=1;MQM=25;MQMR=0;NS=1;NUMALT=1;ODDS=5.99146;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=72;QR=0;RO=0;RPL=0;RPP=7.35324;RPPR=0;RPR=2;RUN=1;SAF=2;SAP=7.35324;SAR=0;SRF=0;SRP=0;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 1|1:2:0,2:0:0:2:72:-4.68712,-0.60206,0 .:.:.:.:.:.:.:. .:.:.:.:.:.:.:. dDocent_Contig_9872 157 . T A 60.2853 . AB=0.230769;ABP=11.1951;AC=1;AF=0.166667;AN=6;AO=3;CIGAR=1X;DP=30;DPB=30;DPRA=1.52941;EPP=9.52472;EPPR=61.6401;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=123;QR=951;RO=27;RPL=0;RPP=9.52472;RPPR=61.6401;RPR=3;RUN=1;SAF=0;SAP=9.52472;SAR=3;SRF=0;SRP=61.6401;SRR=27;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:13:10,3:10:389:3:123:-7.5514,0,-31.454 0/0:7:7,0:7:222:0:0:0,-2.10721,-20.2864 0/0:10:10,0:10:340:0:0:0,-3.0103,-30.9134 dDocent_Contig_9873 17 . C G 54.5754 . AB=0.2;ABP=18.6449;AC=4;AF=0.666667;AN=6;AO=4;CIGAR=1X2M1I1M3X;DP=21;DPB=21.5714;DPRA=10;EPP=11.6962;EPPR=37.7539;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=0;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=152;QR=631;RO=16;RPL=0;RPP=11.6962;RPPR=37.7539;RPR=4;RUN=1;SAF=4;SAP=11.6962;SAR=0;SRF=16;SRP=37.7539;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 1|1:1:0,0:0:0:0:0:0,0,0 0|1:9:8,1:8:320:1:40:-1.28641,0,-26.4588 0|1:11:8,3:8:311:3:112:-7.13497,0,-25.041 dDocent_Contig_9875 6 . C T 69.3238 . AB=0;ABP=0;AC=2;AF=1;AN=2;AO=2;CIGAR=10I1X1M1X2M1X;DP=2;DPB=7.83333;DPRA=0;EPP=7.35324;EPPR=0;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=0;NS=1;NUMALT=1;ODDS=5.99146;PAIRED=1;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=73;QR=0;RO=0;RPL=0;RPP=7.35324;RPPR=0;RPR=2;RUN=1;SAF=2;SAP=7.35324;SAR=0;SRF=0;SRP=0;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL .:.:.:.:.:.:.:. .:.:.:.:.:.:.:. 1|1:2:0,2:0:0:2:73:-6.9313,-0.60206,0 dDocent_Contig_9876 41 . A T 313.917 . AB=0.219178;ABP=53.0137;AC=2;AF=0.333333;AN=6;AO=16;CIGAR=1X1M1X;DP=78;DPB=78;DPRA=7.3;EPP=37.7539;EPPR=137.642;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=624;QR=2444;RO=62;RPL=0;RPP=37.7539;RPPR=137.642;RPR=16;RUN=1;SAF=16;SAP=37.7539;SAR=0;SRF=62;SRP=137.642;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|1:47:36,11:36:1428:11:425:-24.453,0,-114.633 0|0:5:5,0:5:201:0:0:0,-1.50515,-18.4709 0|1:26:21,5:21:815:5:199:-10.4616,0,-65.84 dDocent_Contig_9877 25 . C T 377.71 . AB=0.485714;ABP=3.07234;AC=3;AF=0.5;AN=6;AO=17;CIGAR=1X;DP=35;DPB=35;DPRA=0;EPP=39.9253;EPPR=42.0968;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=587;QR=703;RO=18;RPL=0;RPP=39.9253;RPPR=42.0968;RPR=17;RUN=1;SAF=17;SAP=39.9253;SAR=0;SRF=18;SRP=42.0968;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:6:4,2:4:160:2:70:-4.84115,0,-12.9776 0/1:16:6,10:6:241:10:358:-27.7425,0,-17.2502 0/1:13:8,5:8:302:5:159:-10.7101,0,-23.6162 dDocent_Contig_9879 140 . G A 1138.58 . AB=0.382609;ABP=16.7755;AC=3;AF=0.5;AN=6;AO=44;CIGAR=1X;DP=115;DPB=115;DPRA=0;EPP=98.5551;EPPR=157.185;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=0;PAIREDR=0.71831;PAO=0;PQA=0;PQR=0;PRO=0;QA=1700;QR=2764;RO=71;RPL=0;RPP=98.5551;RPPR=157.185;RPR=44;RUN=1;SAF=0;SAP=98.5551;SAR=44;SRF=0;SRP=157.185;SRR=71;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:65:43,22:43:1738:22:853:-57.5126,0,-137.065 0/1:19:13,6:13:447:6:227:-15.0731,0,-34.8181 0/1:31:15,16:15:579:16:620:-46.7953,0,-43.1151 dDocent_Contig_9880 203 . A C 1475.7 . AB=0.642857;ABP=17.9004;AC=3;AF=0.5;AN=6;AO=54;CIGAR=1X;DP=84;DPB=84;DPRA=0;EPP=120.27;EPPR=68.1545;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=1971;QR=1095;RO=30;RPL=54;RPP=120.27;RPPR=68.1545;RPR=0;RUN=1;SAF=0;SAP=120.27;SAR=54;SRF=0;SRP=68.1545;SRR=30;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:50:11,39:11:403:39:1428:-113.763,0,-21.5646 0/1:9:3,6:3:109:6:212:-16.7148,0,-7.45873 0/1:25:16,9:16:583:9:331:-22.615,0,-45.2794 dDocent_Contig_9881 24 . G A 4023.17 . AB=0.751724;ABP=82.8157;AC=4;AF=0.666667;AN=6;AO=129;CIGAR=1X;DP=166;DPB=166;DPRA=0;EPP=283.13;EPPR=83.3548;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=5032;QR=1429;RO=37;RPL=0;RPP=283.13;RPPR=83.3548;RPR=129;RUN=1;SAF=129;SAP=283.13;SAR=0;SRF=37;SRP=83.3548;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:99:21,78:21:808:78:3058:-245.514,0,-43.2181 1/1:21:1,20:1:41:20:781:-66.5158,-2.22706,0 0/1:46:15,31:15:580:31:1193:-93.8104,0,-38.6809 dDocent_Contig_9882 107 . N A 108.212 . AB=0;ABP=0;AC=2;AF=1;AN=2;AO=4;CIGAR=1X;DP=4;DPB=4;DPRA=0;EPP=11.6962;EPPR=0;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=0;NS=1;NUMALT=1;ODDS=7.37776;PAIRED=1;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=117;QR=0;RO=0;RPL=0;RPP=11.6962;RPPR=0;RPR=4;RUN=1;SAF=0;SAP=11.6962;SAR=4;SRF=0;SRP=0;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL ./.:.:.:.:.:.:.:. ./.:.:.:.:.:.:.:. 1/1:4:0,4:0:0:4:117:-10.8209,-1.20412,0 dDocent_Contig_9884 78 . T A 301.412 . AB=0.441176;ABP=4.03217;AC=3;AF=0.5;AN=6;AO=15;CIGAR=1X;DP=34;DPB=34;DPRA=0;EPP=35.5824;EPPR=44.2683;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=3.46945e-18;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=499;QR=658;RO=19;RPL=15;RPP=35.5824;RPPR=44.2683;RPR=0;RUN=1;SAF=15;SAP=35.5824;SAR=0;SRF=19;SRP=44.2683;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:10:5,5:5:171:5:171:-12.7162,0,-12.7162 0/1:11:5,6:5:174:6:189:-14.0087,0,-12.6906 0/1:13:9,4:9:313:4:139:-8.9393,0,-24.5937 dDocent_Contig_9885 7 . G C 5152.96 . AB=0.752809;ABP=52.4174;AC=4;AF=0.666667;AN=6;AO=159;CIGAR=1X;DP=185;DPB=185;DPRA=0;EPP=348.274;EPPR=55.1256;GTI=0;LEN=1;MEANALT=1.33333;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=0.993711;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=6124;QR=820;RO=24;RPL=0;RPP=348.274;RPPR=55.1256;RPR=159;RUN=1;SAF=159;SAP=348.274;SAR=0;SRF=24;SRP=55.1256;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 1/1:96:2,92:2:66:92:3540:-312.474,-22.3401,0 0/1:35:10,25:10:363:25:962:-76.3575,0,-22.4756 0/1:54:12,42:12:391:42:1622:-129.987,0,-19.243 dDocent_Contig_9888 13 . G A 112.541 . AB=0.666667;ABP=4.45795;AC=1;AF=0.166667;AN=6;AO=4;CIGAR=2X3M;DP=42;DPB=42;DPRA=0.428571;EPP=11.6962;EPPR=81.1833;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=2;ODDS=0;PAIRED=1;PAIREDR=0.888889;PAO=0;PQA=0;PQR=0;PRO=0;QA=161;QR=1443;RO=36;RPL=0;RPP=11.6962;RPPR=81.1833;RPR=4;RUN=1;SAF=4;SAP=11.6962;SAR=0;SRF=36;SRP=81.1833;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|0:22:20,2,0:20:799:2,0:78,0:-0.780641,0,-65.6078,-6.80124,-66.2098,-72.6206 0|1:6:2,0,4:2:81:0,4:0,161:-13.0693,-13.6714,-20.3513,0,-7.08367,-5.87955 0|0:14:14,0,0:14:563:0,0:0,0:0,-4.21442,-51.0135,-4.21442,-51.0135,-51.0135 dDocent_Contig_9889 61 . A T 255.928 . AB=0.434783;ABP=3.86001;AC=2;AF=0.333333;AN=6;AO=15;CIGAR=1X;DP=87;DPB=87;DPRA=0;EPP=35.5824;EPPR=159.356;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=0.972222;PAO=0;PQA=0;PQR=0;PRO=0;QA=594;QR=2798;RO=72;RPL=15;RPP=35.5824;RPPR=159.356;RPR=0;RUN=1;SAF=15;SAP=35.5824;SAR=0;SRF=72;SRP=159.356;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:64:59,5:59:2291:5:202:0,-0.70405,-187.818 0/1:4:2,2:2:82:2:81:-6.48161,0,-6.57556 0/1:19:11,8:11:425:8:311:-22.6337,0,-32.8804 dDocent_Contig_9890 21 . C G 792.512 . AB=0.310345;ABP=21.1309;AC=3;AF=0.5;AN=6;AO=18;CIGAR=1X4M;DP=58;DPB=58;DPRA=0;EPP=42.0968;EPPR=48.6112;GTI=0;LEN=1;MEANALT=2.66667;MQM=60;MQMR=60;NS=3;NUMALT=3;ODDS=6.93889e-18;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=722;QR=825;RO=21;RPL=0;RPP=42.0968;RPPR=48.6112;RPR=18;RUN=1;SAF=18;SAP=42.0968;SAR=0;SRF=21;SRP=48.6112;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|1:26:12,3,10,1:12:473:3,10,1:115,400,40:-29.346,-23.5236,-61.5337,0,-29.4849,-35.9109,-29.663,-59.1416,-35.6256,-68.2773 1|0:16:0,5,3,8:0:0:5,3,8:190,119,314:-41.3978,-25.8199,-24.3148,-31.6003,-16.023,-30.6972,-15.5717,0,-5.76969,-13.1635 0|1:16:9,0,5,2:9:352:0,5,2:0,203,82:-14.0303,-16.7396,-45.6714,0,-28.9255,-27.4203,-9.97029,-38.9016,-22.1539,-38.2995 dDocent_Contig_9891 42 . C G 35.7535 . AB=0.117647;ABP=67.7713;AC=2;AF=0.333333;AN=6;AO=6;CIGAR=1X;DP=55;DPB=55;DPRA=6.375;EPP=16.0391;EPPR=109.412;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=231;QR=1979;RO=49;RPL=0;RPP=16.0391;RPPR=109.412;RPR=6;RUN=1;SAF=6;SAP=16.0391;SAR=0;SRF=49;SRP=109.412;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:44:40,4:40:1616:4:152:-0.799286,0,-132.421 0/0:4:4,0:4:160:0:0:0,-1.20412,-14.7829 0/1:7:5,2:5:203:2:79:-5.39003,0,-16.5456 dDocent_Contig_9892 8 . C T 342.115 . AB=0.0472973;ABP=529.915;AC=0;AF=0;AN=6;AO=17;CIGAR=2X1M1X;DP=359;DPB=359;DPRA=0;EPP=39.9253;EPPR=595.822;GTI=0;LEN=1;MEANALT=5;MQM=46.5882;MQMR=60;NS=3;NUMALT=4;ODDS=0;PAIRED=0.941176;PAIREDR=0.78022;PAO=0;PQA=0;PQR=0;PRO=0;QA=641;QR=9485;RO=273;RPL=0;RPP=39.9253;RPPR=595.822;RPR=17;RUN=1;SAF=17;SAP=39.9253;SAR=0;SRF=273;SRP=595.822;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|0:190:140,10,10,24,4:140:4776:10,10,24,4:352,372,911,72:-32.6161,-63.1178,-447.556,-44.6656,-420.483,-429.143,0,-375.859,-357.444,-380.304,-69.4965,-445.294,-426.881,-382.257,-455.761 0|0:106:84,6,4,10,1:84:3026:6,4,10,1:200,154,371,25:-5.11808,-21.6735,-266.754,-19.3147,-257.478,-265.039,0,-238.203,-235.884,-243.957,-28.4588,-266.613,-264.295,-245.02,-275.077 0|0:63:49,1,3,4,6:49:1683:1,3,4,6:35,115,147,164:0,-13.2727,-149.621,-5.40936,-140.595,-141.177,-2.71303,-137.902,-130.06,-138.183,-1.83921,-136.984,-129.142,-126.449,-136.662 dDocent_Contig_9893 16 . C A 38.5766 . AB=0.2;ABP=14.7363;AC=1;AF=0.166667;AN=6;AO=3;CIGAR=1X;DP=30;DPB=30;DPRA=2;EPP=9.52472;EPPR=61.6401;GTI=0;LEN=1;MEANALT=1;MQM=43;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=0;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=109;QR=1043;RO=27;RPL=0;RPP=9.52472;RPPR=61.6401;RPR=3;RUN=1;SAF=3;SAP=9.52472;SAR=0;SRF=27;SRP=61.6401;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:15:12,3:12:466:3:109:-5.37974,0,-37.7759 0/0:14:14,0:14:537:0:0:0,-4.21442,-48.6732 0/0:1:1,0:1:40:0:0:0,-0.30103,-3.99568 dDocent_Contig_9894 84 . T G 80.6565 . AB=0.25;ABP=13.8677;AC=1;AF=0.166667;AN=6;AO=5;CIGAR=1X;DP=108;DPB=108;DPRA=0.454545;EPP=13.8677;EPPR=226.672;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=173;QR=3652;RO=103;RPL=5;RPP=13.8677;RPPR=226.672;RPR=0;RUN=1;SAF=5;SAP=13.8677;SAR=0;SRF=103;SRP=226.672;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:77:77,0:77:2721:0:0:0,-23.1793,-245.136 0/0:11:11,0:11:394:0:0:0,-3.31133,-35.8016 0/1:20:15,5:15:537:5:173:-9.88956,0,-42.6448 dDocent_Contig_9895 177 . A C 1927.37 . AB=0.715596;ABP=47.0175;AC=3;AF=0.5;AN=6;AO=78;CIGAR=1X;DP=109;DPB=109;DPRA=0;EPP=3.12166;EPPR=70.3259;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=6.93889e-18;PAIRED=0.948718;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=2557;QR=989;RO=31;RPL=40;RPP=3.12166;RPPR=70.3259;RPR=38;RUN=1;SAF=0;SAP=172.385;SAR=78;SRF=0;SRP=70.3259;SRR=31;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:75:18,57:18:575:57:1837:-143.011,0,-29.4772 0/1:12:2,10:2:65:10:326:-26.0395,0,-2.56093 0/1:22:11,11:11:349:11:394:-29.1718,0,-25.0969 dDocent_Contig_9896 7 . G A 30.6625 . AB=0.15;ABP=24.2907;AC=1;AF=0.166667;AN=6;AO=3;CIGAR=1X;DP=39;DPB=39;DPRA=2.10526;EPP=9.52472;EPPR=79.0118;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=117;QR=1133;RO=35;RPL=0;RPP=9.52472;RPPR=79.0118;RPR=3;RUN=1;SAF=3;SAP=9.52472;SAR=0;SRF=35;SRP=79.0118;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:9:9,0:9:279:0:0:0,-2.70927,-25.4068 0/1:20:17,3:17:564:3:117:-4.88978,0,-45.0416 0/0:10:9,0:9:290:0:0:0,-2.70927,-26.2014 dDocent_Contig_9897 44 . C T 344.71 . AB=0.481481;ABP=3.09072;AC=3;AF=0.5;AN=6;AO=13;CIGAR=1X;DP=27;DPB=27;DPRA=0;EPP=31.2394;EPPR=33.4109;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=57.5;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=0.928571;PAO=0;PQA=0;PQR=0;PRO=0;QA=517;QR=569;RO=14;RPL=0;RPP=31.2394;RPPR=33.4109;RPR=13;RUN=1;SAF=13;SAP=31.2394;SAR=0;SRF=14;SRP=33.4109;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:12:6,6:6:243:6:241:-18.4528,0,-18.6358 0/1:12:7,5:7:285:5:201:-14.8582,0,-22.412 0/1:3:1,2:1:41:2:75:-6.2165,0,-1.58617 dDocent_Contig_9899 18 . A G 60.7214 . AB=0.222222;ABP=15.074;AC=2;AF=0.333333;AN=6;AO=4;CIGAR=1X;DP=24;DPB=24;DPRA=1.5;EPP=11.6962;EPPR=46.4397;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=0.85;PAO=0;PQA=0;PQR=0;PRO=0;QA=158;QR=812;RO=20;RPL=0;RPP=11.6962;RPPR=46.4397;RPR=4;RUN=1;SAF=4;SAP=11.6962;SAR=0;SRF=20;SRP=46.4397;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:16:13,3:13:528:3:117:-6.0921,0,-43.05 0/0:6:6,0:6:244:0:0:0,-1.80618,-22.3388 0/1:2:1,1:1:40:1:41:-3.49251,0,-3.39362 dDocent_Contig_9900 15 . C A 709.634 . AB=0.421875;ABP=6.40323;AC=3;AF=0.5;AN=6;AO=27;CIGAR=1X;DP=64;DPB=64;DPRA=0;EPP=61.6401;EPPR=83.3548;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=1052;QR=1470;RO=37;RPL=0;RPP=61.6401;RPPR=83.3548;RPR=27;RUN=1;SAF=27;SAP=61.6401;SAR=0;SRF=37;SRP=83.3548;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:18:10,8:10:389:8:320:-23.7475,0,-29.9403 0/1:24:20,4:20:807:4:158:-7.37464,0,-65.7206 0/1:22:7,15:7:274:15:574:-45.3641,0,-18.4015 dDocent_Contig_9903 127 . T A 420.952 . AB=0.475;ABP=3.22745;AC=3;AF=0.5;AN=6;AO=19;CIGAR=1X;DP=40;DPB=40;DPRA=0;EPP=44.2683;EPPR=48.6112;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=651;QR=727;RO=21;RPL=0;RPP=44.2683;RPPR=48.6112;RPR=19;RUN=1;SAF=0;SAP=44.2683;SAR=19;SRF=0;SRP=48.6112;SRR=21;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:24:13,11:13:447:11:384:-27.6709,0,-33.3346 0/1:4:1,3:1:35:3:105:-8.59204,0,-2.29451 0/1:12:7,5:7:245:5:162:-11.2872,0,-18.7789 dDocent_Contig_9904 51 . G C 76.5013 . AB=0.428571;ABP=3.32051;AC=1;AF=0.166667;AN=6;AO=3;CIGAR=1X;DP=22;DPB=22;DPRA=0.933333;EPP=9.52472;EPPR=44.2683;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=59.2105;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=121;QR=751;RO=19;RPL=3;RPP=9.52472;RPPR=44.2683;RPR=0;RUN=1;SAF=3;SAP=9.52472;SAR=0;SRF=19;SRP=44.2683;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:7:4,3:4:159:3:121:-9.17299,0,-12.5142 0/0:8:8,0:8:321:0:0:0,-2.40824,-29.2574 0/0:7:7,0:7:271:0:0:0,-2.10721,-24.7519 dDocent_Contig_9905 1 . N G 110.027 . AB=0;ABP=0;AC=2;AF=1;AN=2;AO=3;CIGAR=1X;DP=3;DPB=3;DPRA=0;EPP=9.52472;EPPR=0;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=0;NS=1;NUMALT=1;ODDS=6.68461;PAIRED=1;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=118;QR=0;RO=0;RPL=0;RPP=9.52472;RPPR=0;RPR=3;RUN=1;SAF=3;SAP=9.52472;SAR=0;SRF=0;SRP=0;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL ./.:.:.:.:.:.:.:. 1/1:3:0,3:0:0:3:118:-11.0022,-0.90309,0 ./.:.:.:.:.:.:.:. dDocent_Contig_9910 34 . G T 239.08 . AB=0.277778;ABP=18.4519;AC=1;AF=0.166667;AN=6;AO=10;CIGAR=1X;DP=58;DPB=58;DPRA=3.27273;EPP=24.725;EPPR=107.241;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=399;QR=1937;RO=48;RPL=0;RPP=24.725;RPPR=107.241;RPR=10;RUN=1;SAF=10;SAP=24.725;SAR=0;SRF=48;SRP=107.241;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:36:26,10:26:1058:10:399:-25.4308,0,-84.6696 0/0:8:8,0:8:316:0:0:0,-2.40824,-28.8018 0/0:14:14,0:14:563:0:0:0,-4.21442,-51.0117 dDocent_Contig_9912 179 . C T 154.423 . AB=0.204082;ABP=40.2799;AC=3;AF=0.5;AN=6;AO=10;CIGAR=1X;DP=49;DPB=49;DPRA=0;EPP=24.725;EPPR=87.6977;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=384;QR=1522;RO=39;RPL=10;RPP=24.725;RPPR=87.6977;RPR=0;RUN=1;SAF=0;SAP=24.725;SAR=10;SRF=0;SRP=87.6977;SRR=39;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:33:28,5:28:1091:5:189:-7.43949,0,-88.5489 0/1:4:3,1:3:115:1:40:-2.79156,0,-9.51909 0/1:12:8,4:8:316:4:155:-10.7113,0,-25.1931 dDocent_Contig_9913 44 . G A 610.048 . AB=0.468085;ABP=3.42611;AC=3;AF=0.5;AN=6;AO=22;CIGAR=1X;DP=47;DPB=47;DPRA=0;EPP=50.7827;EPPR=57.2971;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=3.46945e-18;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=884;QR=1000;RO=25;RPL=0;RPP=50.7827;RPPR=57.2971;RPR=22;RUN=1;SAF=22;SAP=50.7827;SAR=0;SRF=25;SRP=57.2971;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:30:15,15:15:596:15:598:-45.1241,0,-44.9464 0/1:10:8,2:8:325:2:81:-4.67543,0,-26.6093 0/1:7:2,5:2:79:5:205:-16.7278,0,-5.39042 dDocent_Contig_9914 12 . C T 290.385 . AB=0.135135;ABP=45.7942;AC=0;AF=0;AN=6;AO=6;CIGAR=2X;DP=71;DPB=71;DPRA=1.58824;EPP=16.0391;EPPR=118.098;GTI=0;LEN=1;MEANALT=2;MQM=60;MQMR=60;NS=3;NUMALT=2;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=233;QR=2102;RO=53;RPL=0;RPP=16.0391;RPPR=118.098;RPR=6;RUN=1;SAF=6;SAP=16.0391;SAR=0;SRF=53;SRP=118.098;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|0:37:21,5,11:21:833:5,11:193,447:-30.5612,-21.042,-88.096,0,-52.7289,-65.2627 0|0:17:15,1,1:15:587:1,1:40,40:0,-1.22037,-49.1724,-1.22037,-46.1778,-49.1724 0|0:17:17,0,0:17:682:0,0:0,0:0,-5.11751,-61.7091,-5.11751,-61.7091,-61.7091 dDocent_Contig_9915 37 . C G 582.35 . AB=0.323944;ABP=22.1254;AC=2;AF=0.333333;AN=6;AO=25;CIGAR=1X;DP=113;DPB=113;DPRA=0;EPP=57.2971;EPPR=194.1;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=971;QR=3500;RO=88;RPL=0;RPP=57.2971;RPPR=194.1;RPR=25;RUN=1;SAF=25;SAP=57.2971;SAR=0;SRF=88;SRP=194.1;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:55:37,18:37:1459:18:724:-48.9271,0,-115.003 0/0:42:40,2:40:1608:2:55:0,-7.42238,-139.731 0/1:16:11,5:11:433:5:192:-12.8308,0,-34.5024 dDocent_Contig_9916 10 . G A 367.93 . AB=0.227273;ABP=59.8634;AC=3;AF=0.5;AN=6;AO=20;CIGAR=1X;DP=88;DPB=88;DPRA=0;EPP=46.4397;EPPR=150.67;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=6.93889e-18;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=752;QR=2554;RO=68;RPL=0;RPP=46.4397;RPPR=150.67;RPR=20;RUN=1;SAF=20;SAP=46.4397;SAR=0;SRF=68;SRP=150.67;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:36:25,11:25:935:11:425:-27.7616,0,-73.6133 0/1:5:4,1:4:162:1:40:-2.49053,0,-13.4618 0/1:47:39,8:39:1457:8:287:-12.0192,0,-117.23 dDocent_Contig_9917 7 . G A 505.545 . AB=0.514286;ABP=3.07234;AC=1;AF=0.166667;AN=6;AO=19;CIGAR=1X;DP=56;DPB=56;DPRA=4.16667;EPP=44.2683;EPPR=83.3548;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=0;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=731;QR=1127;RO=37;RPL=0;RPP=44.2683;RPPR=83.3548;RPR=19;RUN=1;SAF=19;SAP=44.2683;SAR=0;SRF=37;SRP=83.3548;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:35:17,18:17:513:18:692:-52.077,0,-35.9131 0/0:15:14,1:14:426:1:39:0,-0.618885,-34.725 0/0:6:6,0:6:188:0:0:0,-1.80618,-17.2258 dDocent_Contig_9918 27 . C T 2955.05 . AB=0.1;ABP=294.856;AC=1;AF=0.166667;AN=6;AO=21;CIGAR=1X2M1X;DP=210;DPB=210;DPRA=0;EPP=48.6112;EPPR=189.757;GTI=0;LEN=1;MEANALT=3;MQM=60;MQMR=60;NS=3;NUMALT=2;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=821;QR=3369;RO=86;RPL=0;RPP=48.6112;RPPR=189.757;RPR=21;RUN=1;SAF=21;SAP=48.6112;SAR=0;SRF=86;SRP=189.757;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|0:116:60,7,47:60:2347:7,47:271,1832:-132.493,-128.297,-319.145,0,-170.699,-178.808 1|0:33:4,7,22:4:158:7,22:276,851:-78.3745,-56.8682,-67.7642,-9.70596,0,-16.0855 0|0:61:22,7,30:22:864:7,30:274,1177:-90.1604,-74.2556,-143.204,0,-48.5302,-62.0267 dDocent_Contig_9919 18 . T C 224.17 . AB=0.333333;ABP=10.2485;AC=3;AF=0.5;AN=6;AO=10;CIGAR=1X;DP=30;DPB=30;DPRA=0;EPP=24.725;EPPR=46.4397;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=398;QR=789;RO=20;RPL=0;RPP=24.725;RPPR=46.4397;RPR=10;RUN=1;SAF=10;SAP=24.725;SAR=0;SRF=20;SRP=46.4397;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:9:5,4:5:197:4:155:-11.6125,0,-15.3939 0/1:12:10,2:10:388:2:79:-3.88488,0,-31.6583 0/1:9:5,4:5:204:4:164:-12.4406,0,-16.0348 dDocent_Contig_9923 7 . G A 1025.8 . AB=0.24;ABP=47.0478;AC=2;AF=0.5;AN=4;AO=18;CIGAR=2X;DP=75;DPB=75;DPRA=0;EPP=42.0968;EPPR=35.5824;GTI=0;LEN=1;MEANALT=3;MQM=60;MQMR=60;NS=2;NUMALT=3;ODDS=0;PAIRED=0.833333;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=691;QR=519;RO=15;RPL=0;RPP=42.0968;RPPR=35.5824;RPR=18;RUN=1;SAF=18;SAP=42.0968;SAR=0;SRF=15;SRP=35.5824;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 1|0:43:8,9,5,21:8:288:9,5,21:348,170,685:-57.9727,-31.7813,-52.5754,-46.593,-41.4954,-68.5872,-5.10645,0,-14.818,-22.2772 .:.:.:.:.:.:.:. 1|0:32:7,9,0,15:7:231:9,0,15:343,0,505:-48.3066,-22.2556,-38.2228,-50.4139,-40.932,-69.085,-9.51442,0,-28.1787,-23.6632 dDocent_Contig_9924 101 . N A 39.7289 . AB=0;ABP=0;AC=2;AF=1;AN=2;AO=2;CIGAR=1X3I5X;DP=2;DPB=3;DPRA=0;EPP=7.35324;EPPR=0;GTI=0;LEN=1;MEANALT=1;MQM=21;MQMR=0;NS=1;NUMALT=1;ODDS=5.99146;PAIRED=1;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=75;QR=0;RO=0;RPL=0;RPP=7.35324;RPPR=0;RPR=2;RUN=1;SAF=2;SAP=7.35324;SAR=0;SRF=0;SRP=0;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 1|1:2:0,2:0:0:2:75:-3.97176,-0.60206,0 .:.:.:.:.:.:.:. .:.:.:.:.:.:.:. dDocent_Contig_9925 53 . A T 101.982 . AB=0.263158;ABP=12.2676;AC=1;AF=0.166667;AN=6;AO=5;CIGAR=1X;DP=36;DPB=36;DPRA=2.23529;EPP=13.8677;EPPR=70.3259;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=1.73472e-18;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=193;QR=1185;RO=31;RPL=5;RPP=13.8677;RPPR=70.3259;RPR=0;RUN=1;SAF=5;SAP=13.8677;SAR=0;SRF=31;SRP=70.3259;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:16:16,0:16:626:0:0:0,-4.81648,-56.6758 0/0:1:1,0:1:40:0:0:0,-0.30103,-3.99568 0/1:19:14,5:14:519:5:193:-12.0213,0,-41.3126 dDocent_Contig_9928 63 . T A 5174.55 . AB=0.869792;ABP=231.06;AC=4;AF=0.666667;AN=6;AO=174;CIGAR=1X;DP=199;DPB=199;DPRA=0;EPP=380.846;EPPR=57.2971;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=6423;QR=935;RO=25;RPL=174;RPP=380.846;RPPR=57.2971;RPR=0;RUN=1;SAF=174;SAP=380.846;SAR=0;SRF=25;SRP=57.2971;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:153:18,135:18:682:135:5040:-407.589,0,-15.6548 1/1:7:0,7:0:0:7:264:-24.1201,-2.10721,0 0/1:39:7,32:7:253:32:1119:-89.2686,0,-11.3793 dDocent_Contig_9929 98 . N A 62.694 . AB=0;ABP=0;AC=2;AF=1;AN=2;AO=2;CIGAR=3X;DP=2;DPB=2;DPRA=0;EPP=7.35324;EPPR=0;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=0;NS=1;NUMALT=1;ODDS=5.99146;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=66;QR=0;RO=0;RPL=2;RPP=7.35324;RPPR=0;RPR=0;RUN=1;SAF=2;SAP=7.35324;SAR=0;SRF=0;SRP=0;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL .:.:.:.:.:.:.:. .:.:.:.:.:.:.:. 1|1:2:0,2:0:0:2:66:-6.26831,-0.60206,0 dDocent_Contig_9930 8 . C T 2065.6 . AB=0.133005;ABP=240.492;AC=1;AF=0.166667;AN=6;AO=27;CIGAR=2X;DP=203;DPB=203;DPRA=0;EPP=61.6401;EPPR=202.786;GTI=0;LEN=1;MEANALT=3;MQM=60;MQMR=60;NS=3;NUMALT=3;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=1034;QR=2995;RO=92;RPL=0;RPP=61.6401;RPPR=202.786;RPR=27;RUN=1;SAF=27;SAP=61.6401;SAR=0;SRF=92;SRP=202.786;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|0:149:71,22,5,51:71:2336:22,5,51:847,139,1950:-138.647,-90.4709,-272.58,-149.031,-268.21,-336.256,0,-119.171,-177.738,-173.378 1|0:17:2,3,2,10:2:52:3,2,10:113,78,387:-36.4322,-27.7766,-30.9317,-30.6218,-25.4196,-34.0795,-5.24036,0,-2.85307,-6.27163 0|0:37:19,2,2,14:19:607:2,2,14:74,78,522:-37.0042,-36.6707,-84.9257,-36.3101,-79.1133,-84.5664,0,-42.7798,-42.4198,-44.6228 dDocent_Contig_9932 7 . G A 1744.9 . AB=0.423077;ABP=11.028;AC=3;AF=0.5;AN=6;AO=66;CIGAR=1X;DP=156;DPB=156;DPRA=0;EPP=146.327;EPPR=189.757;GTI=0;LEN=1;MEANALT=2;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=1.38778e-17;PAIRED=1;PAIREDR=0.94186;PAO=0;PQA=0;PQR=0;PRO=0;QA=2501;QR=2730;RO=86;RPL=0;RPP=146.327;RPPR=189.757;RPR=66;RUN=1;SAF=66;SAP=146.327;SAR=0;SRF=86;SRP=189.757;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:106:55,48:55:1752:48:1826:-133.435,0,-126.764 0/1:13:8,5:8:280:5:188:-13.3705,0,-21.6232 0/1:37:23,13:23:698:13:487:-33.2076,0,-52.1378 dDocent_Contig_9933 107 . N A 127.607 . AB=0;ABP=0;AC=2;AF=1;AN=2;AO=4;CIGAR=1X;DP=4;DPB=4;DPRA=0;EPP=11.6962;EPPR=0;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=0;NS=1;NUMALT=1;ODDS=7.37776;PAIRED=1;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=138;QR=0;RO=0;RPL=0;RPP=11.6962;RPPR=0;RPR=4;RUN=1;SAF=0;SAP=11.6962;SAR=4;SRF=0;SRP=0;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 1/1:4:0,4:0:0:4:138:-12.7604,-1.20412,0 ./.:.:.:.:.:.:.:. ./.:.:.:.:.:.:.:. dDocent_Contig_9935 59 . A C 352.32 . AB=0.0952381;ABP=32.8939;AC=0;AF=0;AN=6;AO=2;CIGAR=5M1X2M1X6M;DP=69;DPB=69.2;DPRA=7;EPP=3.0103;EPPR=85.5263;GTI=0;LEN=1;MEANALT=4;MQM=57;MQMR=60;NS=3;NUMALT=5;ODDS=1.38778e-17;PAIRED=0;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=78;QR=1411;RO=38;RPL=2;RPP=7.35324;RPPR=85.5263;RPR=0;RUN=1;SAF=1;SAP=3.0103;SAR=1;SRF=38;SRP=85.5263;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|0:21:15,0,2,2,1,0:15:562:0,2,2,1,0:0,78,81,40,0:-2.16791,-6.68336,-52.6974,-0.28244,-46.2921,-45.6901,0,-46.0157,-39.61,-45.4137,-3.38759,-49.4014,-42.9959,-42.7194,-49.1003,-6.68336,-52.6974,-46.2921,-46.0157,-49.4014,-52.6974 0|0:3:3,0,0,0,0,0:3:114:0,0,0,0,0:0,0,0,0,0:0,-0.90309,-10.6322,-0.90309,-10.6322,-10.6322,-0.90309,-10.6322,-10.6322,-10.6322,-0.90309,-10.6322,-10.6322,-10.6322,-10.6322,-0.90309,-10.6322,-10.6322,-10.6322,-10.6322,-10.6322 0|0:45:20,3,0,1,4,15:20:735:3,0,1,4,15:92,0,40,148,522:-36.44,-35.0902,-94.2881,-42.4606,-95.1912,-102.563,-39.163,-91.8951,-99.2667,-98.9656,-30.3476,-83.0825,-90.4539,-87.1575,-89.2498,0,-52.7481,-60.1178,-56.8211,-48.0081,-55.6023 dDocent_Contig_9936 14 . A G 130.027 . AB=0.176471;ABP=49.3776;AC=2;AF=0.333333;AN=6;AO=9;CIGAR=1X;DP=52;DPB=52;DPRA=25.5;EPP=22.5536;EPPR=96.3836;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=346;QR=1661;RO=43;RPL=0;RPP=22.5536;RPPR=96.3836;RPR=9;RUN=1;SAF=9;SAP=22.5536;SAR=0;SRF=43;SRP=96.3836;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:26:22,4:22:851:4:160:-6.95665,0,-69.0773 0/0:1:1,0:1:41:0:0:0,-0.30103,-4.09457 0/1:25:20,5:20:769:5:186:-9.5682,0,-61.9952 dDocent_Contig_9937 91 . G A 33.5173 . AB=0.5;ABP=3.0103;AC=1;AF=0.166667;AN=6;AO=2;CIGAR=1X;DP=20;DPB=20;DPRA=0.5;EPP=7.35324;EPPR=42.0968;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=64;QR=633;RO=18;RPL=2;RPP=7.35324;RPPR=42.0968;RPR=0;RUN=1;SAF=2;SAP=7.35324;SAR=0;SRF=18;SRP=42.0968;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:4:2,2:2:65:2:64:-4.87425,0,-4.96891 0/0:8:8,0:8:282:0:0:0,-2.40824,-25.7214 0/0:8:8,0:8:286:0:0:0,-2.40824,-26.0856 dDocent_Contig_9938 118 . T C 212.98 . AB=0.478261;ABP=3.10471;AC=2;AF=0.333333;AN=6;AO=11;CIGAR=1X;DP=24;DPB=24;DPRA=11.5;EPP=26.8965;EPPR=31.2394;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=346;QR=439;RO=13;RPL=0;RPP=26.8965;RPPR=31.2394;RPR=11;RUN=1;SAF=0;SAP=26.8965;SAR=11;SRF=0;SRP=31.2394;SRR=13;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:12:5,7:5:173:7:234:-17.7752,0,-12.2979 0/0:1:1,0:1:34:0:0:0,-0.30103,-3.39891 0/1:11:7,4:7:232:4:112:-7.04486,0,-17.8932 dDocent_Contig_9939 106 . N A 652.968 . AB=0.481481;ABP=3.09072;AC=6;AF=1;AN=6;AO=13;CIGAR=2X3M1X3M;DP=32;DPB=32;DPRA=0;EPP=31.2394;EPPR=0;GTI=0;LEN=1;MEANALT=3.5;MQM=57.4615;MQMR=0;NS=3;NUMALT=5;ODDS=0;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=424;QR=0;RO=0;RPL=0;RPP=31.2394;RPPR=0;RPR=13;RUN=1;SAF=0;SAP=31.2394;SAR=13;SRF=0;SRP=0;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 1|1:23:0,2,7,0,2,12:0:0:2,7,0,2,12:69,234,0,68,397:-50.1962,-44.589,-43.9869,-32.0988,-26.4915,-29.9916,-50.1962,-44.589,-32.0988,-50.1962,-44.6792,-39.0718,-26.582,-44.6792,-44.0772,-18.0875,-12.4782,0,-18.0875,-12.569,-14.4751 1|1:5:0,0,3,0,2,0:0:0:0,3,0,2,0:0,89,0,66,0:-12.5837,-12.5837,-12.5837,-5.66612,-5.66612,-4.76303,-12.5837,-12.5837,-5.66612,-12.5837,-7.23174,-7.23174,0,-7.23174,-6.62968,-12.5837,-12.5837,-5.66612,-12.5837,-7.23174,-12.5837 1|1:4:0,0,1,2,0,1:0:0:0,1,2,0,1:0,26,66,0,27:-7.40079,-7.40079,-7.40079,-5.39632,-5.39632,-5.09529,-2.02382,-2.02382,0,-1.42176,-7.40079,-7.40079,-5.39632,-2.02382,-7.40079,-5.5588,-5.5588,-3.56788,-0.174089,-5.5588,-5.25777 dDocent_Contig_9940 23 . T A 86.5245 . AB=0.153846;ABP=16.5402;AC=0;AF=0;AN=6;AO=2;CIGAR=6M1X4M;DP=40;DPB=39.4545;DPRA=0.590909;EPP=7.35324;EPPR=72.4974;GTI=0;LEN=1;MEANALT=2;MQM=60;MQMR=60;NS=3;NUMALT=2;ODDS=0;PAIRED=0;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=76;QR=1266;RO=32;RPL=0;RPP=7.35324;RPPR=72.4974;RPR=2;RUN=1;SAF=2;SAP=7.35324;SAR=0;SRF=32;SRP=72.4974;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|0:22:21,1,0:21:835:1,0:40,0:0,-2.62698,-71.473,-6.32163,-71.7741,-75.0692 0|0:5:3,2,0:3:114:2,0:71,0:-5.23523,0,-9.12633,-6.13832,-9.72839,-15.502 0|0:13:8,3,2:8:317:3,2:114,76:-6.9399,0,-25.2027,-3.11563,-19.8765,-28.6182 dDocent_Contig_9941 77 . C T 1346.65 . AB=0.575;ABP=4.96463;AC=4;AF=0.666667;AN=6;AO=45;CIGAR=1X;DP=63;DPB=63;DPRA=0;EPP=100.727;EPPR=42.0968;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=0.977778;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=1701;QR=680;RO=18;RPL=45;RPP=100.727;RPPR=42.0968;RPR=0;RUN=1;SAF=45;SAP=100.727;SAR=0;SRF=18;SRP=42.0968;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:28:9,19:9:342:19:728:-57.4223,0,-22.7057 0/1:12:8,4:8:299:4:158:-10.9875,0,-23.6513 1/1:23:1,22:1:39:22:815:-69.7784,-3.02713,0 dDocent_Contig_9942 27 . T C 2135.86 . AB=0.563492;ABP=7.42218;AC=3;AF=0.5;AN=6;AO=71;CIGAR=1X;DP=126;DPB=126;DPRA=0;EPP=157.185;EPPR=122.441;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=2846;QR=2210;RO=55;RPL=0;RPP=157.185;RPPR=122.441;RPR=71;RUN=1;SAF=71;SAP=157.185;SAR=0;SRF=55;SRP=122.441;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:62:26,36:26:1035:36:1449:-111.996,0,-74.7792 0/1:10:5,5:5:204:5:204:-15.7337,0,-15.7337 0/1:54:24,30:24:971:30:1193:-91.3782,0,-71.4319 dDocent_Contig_9943 83 . A T 107.419 . AB=0.24;ABP=17.6895;AC=1;AF=0.166667;AN=6;AO=6;CIGAR=1X;DP=41;DPB=41;DPRA=3.125;EPP=16.0391;EPPR=79.0118;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=216;QR=1196;RO=35;RPL=6;RPP=16.0391;RPPR=79.0118;RPR=0;RUN=1;SAF=6;SAP=16.0391;SAR=0;SRF=35;SRP=79.0118;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:25:19,6:19:657:6:216:-12.2648,0,-51.9282 0/0:6:6,0:6:207:0:0:0,-1.80618,-18.9682 0/0:10:10,0:10:332:0:0:0,-3.0103,-30.2024 dDocent_Contig_9945 18 . A T 316.932 . AB=0.231884;ABP=46.0936;AC=2;AF=0.5;AN=4;AO=16;CIGAR=1X;DP=69;DPB=69;DPRA=0;EPP=37.7539;EPPR=118.098;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=2;NUMALT=1;ODDS=0;PAIRED=0;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=616;QR=2099;RO=53;RPL=0;RPP=37.7539;RPPR=118.098;RPR=16;RUN=1;SAF=16;SAP=37.7539;SAR=0;SRF=53;SRP=118.098;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:41:34,7:34:1358:7:274:-12.6864,0,-110.143 ./.:.:.:.:.:.:.:. 0/1:28:19,9:19:741:9:342:-22.7058,0,-58.587 dDocent_Contig_9947 7 . G A 195.898 . AB=0.215686;ABP=38.8183;AC=2;AF=0.333333;AN=6;AO=11;CIGAR=1X;DP=58;DPB=58;DPRA=3.64286;EPP=26.8965;EPPR=100.727;GTI=0;LEN=1;MEANALT=2;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=3.46945e-18;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=416;QR=1405;RO=45;RPL=0;RPP=26.8965;RPPR=100.727;RPR=11;RUN=1;SAF=11;SAP=26.8965;SAR=0;SRF=45;SRP=100.727;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:28:23,4:23:741:4:154:-5.94071,0,-58.7302 0/0:7:7,0:7:206:0:0:0,-2.10721,-18.828 0/1:23:15,7:15:458:7:262:-17.1719,0,-34.7597 dDocent_Contig_9948 98 . N C 600.104 . AB=0;ABP=0;AC=4;AF=1;AN=4;AO=19;CIGAR=1X;DP=19;DPB=19;DPRA=0;EPP=44.2683;EPPR=0;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=0;NS=2;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=656;QR=0;RO=0;RPL=19;RPP=44.2683;RPPR=0;RPR=0;RUN=1;SAF=19;SAP=44.2683;SAR=0;SRF=0;SRP=0;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 1/1:8:0,8:0:0:8:277:-25.267,-2.40824,0 ./.:.:.:.:.:.:.:. 1/1:11:0,11:0:0:11:379:-34.4424,-3.31133,0 dDocent_Contig_9949 45 . T A 2069.29 . AB=0.59322;ABP=11.917;AC=3;AF=0.5;AN=6;AO=70;CIGAR=1X;DP=118;DPB=118;DPRA=0;EPP=155.013;EPPR=107.241;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=2745;QR=1906;RO=48;RPL=0;RPP=155.013;RPPR=107.241;RPR=70;RUN=1;SAF=70;SAP=155.013;SAR=0;SRF=48;SRP=107.241;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:27:8,19:8:314:19:742:-58.9756,0,-20.495 0/1:51:17,34:17:664:34:1333:-104.887,0,-44.7352 0/1:40:23,17:23:928:17:670:-48.5897,0,-71.7826 dDocent_Contig_9950 15 . T C 3742.07 . AB=0.699248;ABP=48.8725;AC=4;AF=0.666667;AN=6;AO=119;CIGAR=1X;DP=161;DPB=161;DPRA=0;EPP=261.416;EPPR=94.2121;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=4713;QR=1675;RO=42;RPL=0;RPP=261.416;RPPR=94.2121;RPR=119;RUN=1;SAF=119;SAP=261.416;SAR=0;SRF=42;SRP=94.2121;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:73:17,56:17:685:56:2227:-178.628,0,-40.0054 1/1:28:2,26:2:75:26:1009:-83.985,-1.31004,0 0/1:60:23,37:23:915:37:1477:-115.117,0,-64.5961 dDocent_Contig_9952 27 . C T 56.6739 . AB=0.166667;ABP=26.1727;AC=1;AF=0.166667;AN=6;AO=4;CIGAR=1X;DP=40;DPB=40;DPRA=3;EPP=11.6962;EPPR=81.1833;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=156;QR=1426;RO=36;RPL=0;RPP=11.6962;RPPR=81.1833;RPR=4;RUN=1;SAF=4;SAP=11.6962;SAR=0;SRF=36;SRP=81.1833;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:24:20,4:20:794:4:156:-7.19023,0,-64.5574 0/0:5:5,0:5:195:0:0:0,-1.50515,-17.9231 0/0:11:11,0:11:437:0:0:0,-3.31133,-39.6852 dDocent_Contig_9953 173 . G T 77.7602 . AB=0.235294;ABP=13.3567;AC=1;AF=0.166667;AN=6;AO=4;CIGAR=1X;DP=26;DPB=26;DPRA=3.77778;EPP=11.6962;EPPR=42.4916;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=55.3636;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=0.909091;PAO=0;PQA=0;PQR=0;PRO=0;QA=156;QR=831;RO=22;RPL=4;RPP=11.6962;RPPR=50.7827;RPR=0;RUN=1;SAF=0;SAP=11.6962;SAR=4;SRF=1;SRP=42.4916;SRR=21;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:17:13,4:13:485:4:156:-9.29869,0,-33.1504 0/0:6:6,0:6:226:0:0:0,-1.80618,-20.699 0/0:3:3,0:3:120:0:0:0,-0.90309,-11.1877 dDocent_Contig_9954 11 . G T 110.461 . AB=0.277778;ABP=10.7311;AC=1;AF=0.166667;AN=6;AO=5;CIGAR=1X;DP=76;DPB=76;DPRA=0.62069;EPP=13.8677;EPPR=157.185;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=1.73472e-18;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=199;QR=2709;RO=71;RPL=0;RPP=13.8677;RPPR=157.185;RPR=5;RUN=1;SAF=5;SAP=13.8677;SAR=0;SRF=71;SRP=157.185;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:46:46,0:46:1760:0:0:0,-13.8474,-158.63 0/1:18:13,5:13:515:5:199:-12.87,0,-41.2788 0/0:12:12,0:12:434:0:0:0,-3.61236,-39.3942 dDocent_Contig_9955 32 . A G 214.608 . AB=0.203125;ABP=52.0041;AC=3;AF=0.5;AN=6;AO=13;CIGAR=1X;DP=64;DPB=64;DPRA=0;EPP=31.2394;EPPR=113.755;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=0.538462;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=487;QR=1953;RO=51;RPL=0;RPP=31.2394;RPPR=113.755;RPR=13;RUN=1;SAF=13;SAP=31.2394;SAR=0;SRF=51;SRP=113.755;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:38:32,6:32:1214:6:241:-10.6272,0,-98.0943 0/1:15:9,6:9:350:6:206:-14.3496,0,-27.3413 0/1:11:10,1:10:389:1:40:-0.684349,0,-32.0534 dDocent_Contig_9956 7 . G A 342.316 . AB=0.185185;ABP=95.9815;AC=2;AF=0.333333;AN=6;AO=20;CIGAR=1X;DP=153;DPB=153;DPRA=1.2;EPP=46.4397;EPPR=266.028;GTI=0;LEN=1;MEANALT=2;MQM=60;MQMR=58.9457;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=0.968992;PAO=0;PQA=0;PQR=0;PRO=0;QA=766;QR=4166;RO=129;RPL=0;RPP=46.4397;RPPR=283.13;RPR=20;RUN=1;SAF=20;SAP=46.4397;SAR=0;SRF=127;SRP=266.028;SRR=2;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:49:36,11:36:1189:11:418:-23.6715,0,-93.0173 0/0:45:44,0:44:1473:0:0:0,-13.2453,-129.012 0/1:59:49,9:49:1504:9:348:-14.083,0,-117.764 dDocent_Contig_9957 7 . G A 244.116 . AB=0.323529;ABP=12.2071;AC=2;AF=0.333333;AN=6;AO=12;CIGAR=1X;DP=49;DPB=49;DPRA=0;EPP=29.068;EPPR=81.1833;GTI=0;LEN=1;MEANALT=1.33333;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=455;QR=1232;RO=36;RPL=0;RPP=29.068;RPPR=81.1833;RPR=12;RUN=1;SAF=12;SAP=29.068;SAR=0;SRF=36;SRP=81.1833;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:16:9,7:9:298:7:262:-19.1193,0,-22.3228 0/1:18:14,4:14:480:4:154:-8.81492,0,-38.098 0/0:15:13,1:13:454:1:39:0,-0.657666,-37.3331 dDocent_Contig_9958 136 . C G 231.962 . AB=0.27907;ABP=21.2406;AC=3;AF=0.5;AN=6;AO=12;CIGAR=1X;DP=43;DPB=43;DPRA=0;EPP=29.068;EPPR=70.3259;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=451;QR=1167;RO=31;RPL=0;RPP=29.068;RPPR=70.3259;RPR=12;RUN=1;SAF=0;SAP=29.068;SAR=12;SRF=0;SRP=70.3259;SRR=31;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:28:21,7:21:792:7:273:-16.5092,0,-63.174 0/1:5:2,3:2:75:3:117:-9.40523,0,-5.61495 0/1:10:8,2:8:300:2:61:-2.78137,0,-24.3436 dDocent_Contig_9959 21 . T G 73.9415 . AB=0.5;ABP=3.0103;AC=1;AF=0.166667;AN=6;AO=3;CIGAR=1X;DP=39;DPB=39;DPRA=0.363636;EPP=9.52472;EPPR=81.1833;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=115;QR=1382;RO=36;RPL=0;RPP=9.52472;RPPR=81.1833;RPR=3;RUN=1;SAF=3;SAP=9.52472;SAR=0;SRF=36;SRP=81.1833;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:6:3,3:3:117:3:115:-8.91703,0,-9.10352 0/0:17:17,0:17:644:0:0:0,-5.11751,-58.2932 0/0:16:16,0:16:621:0:0:0,-4.81648,-56.2287 dDocent_Contig_9961 8 . A G 200.554 . AB=0;ABP=0;AC=2;AF=0.333333;AN=6;AO=6;CIGAR=1X3M1X1M1X3M5I2X;DP=26;DPB=28.5;DPRA=0.6;EPP=16.0391;EPPR=46.4397;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=217;QR=766;RO=20;RPL=0;RPP=16.0391;RPPR=46.4397;RPR=6;RUN=1;SAF=6;SAP=16.0391;SAR=0;SRF=20;SRP=46.4397;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|0:12:12,0:12:462:0:0:0,-3.61236,-41.9294 1|1:6:0,6:0:0:6:217:-19.8793,-1.80618,0 0|0:8:8,0:8:304:0:0:0,-2.40824,-27.7184 dDocent_Contig_9963 22 . T G 47.9861 . AB=0.16;ABP=28.1125;AC=1;AF=0.25;AN=4;AO=5;CIGAR=1X;DP=50;DPB=50;DPRA=0;EPP=13.8677;EPPR=100.727;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=2;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=196;QR=1835;RO=45;RPL=0;RPP=13.8677;RPPR=100.727;RPR=5;RUN=1;SAF=5;SAP=13.8677;SAR=0;SRF=45;SRP=100.727;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:25:24,1:24:980:1:41:0,-3.43118,-84.3999 ./.:.:.:.:.:.:.:. 0/1:25:21,4:21:855:4:155:-6.79861,0,-69.7336 dDocent_Contig_9964 11 . A G 315.39 . AB=0.317073;ABP=14.9269;AC=1;AF=0.166667;AN=6;AO=16;CIGAR=1X;DP=101;DPB=101;DPRA=7.91667;EPP=37.7539;EPPR=187.585;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=606;QR=3310;RO=85;RPL=0;RPP=37.7539;RPPR=187.585;RPR=16;RUN=1;SAF=16;SAP=37.7539;SAR=0;SRF=85;SRP=187.585;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:54:51,3:51:1988:3:102:0,-6.74396,-169.611 0/0:6:6,0:6:236:0:0:0,-1.80618,-21.6119 0/1:41:28,13:28:1086:13:504:-33.3629,0,-85.6904 dDocent_Contig_9965 34 . C T 415.938 . AB=0.386364;ABP=7.94546;AC=3;AF=0.5;AN=6;AO=17;CIGAR=1X2M2I1M1X;DP=44;DPB=51.6;DPRA=0;EPP=39.9253;EPPR=57.2971;GTI=0;LEN=1;MEANALT=1.33333;MQM=60;MQMR=60;NS=3;NUMALT=2;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=656;QR=926;RO=25;RPL=0;RPP=39.9253;RPPR=57.2971;RPR=17;RUN=1;SAF=17;SAP=39.9253;SAR=0;SRF=25;SRP=57.2971;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|1:23:12,0,11:12:460:0,11:0,423:-31.4998,-35.1121,-72.8654,0,-38.137,-34.8256 0|1:11:8,0,3:8:273:0,3:0,115:-7.41315,-9.82139,-31.9357,0,-22.4859,-21.5828 0|1:10:5,2,3:5:193:2,3:78,118:-8.20367,-3.29856,-18.5419,0,-9.4344,-14.944 dDocent_Contig_9966 56 . G A 144.901 . AB=0.235294;ABP=23.7032;AC=3;AF=0.5;AN=6;AO=8;CIGAR=1X;DP=34;DPB=34;DPRA=0;EPP=20.3821;EPPR=59.4686;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=59.4615;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=0.961538;PAO=0;PQA=0;PQR=0;PRO=0;QA=323;QR=1032;RO=26;RPL=8;RPP=20.3821;RPPR=59.4686;RPR=0;RUN=1;SAF=8;SAP=20.3821;SAR=0;SRF=26;SRP=59.4686;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:15:11,4:11:440:4:161:-10.3598,0,-35.3702 0/1:12:10,2:10:408:2:81:-4.07337,0,-33.4682 0/1:7:5,2:5:184:2:81:-5.57852,0,-14.8036 dDocent_Contig_9967 18 . T C 934.021 . AB=0.56;ABP=4.57376;AC=3;AF=0.5;AN=6;AO=28;CIGAR=4X;DP=50;DPB=50;DPRA=0;EPP=63.8115;EPPR=31.2394;GTI=0;LEN=1;MEANALT=2;MQM=60;MQMR=60;NS=3;NUMALT=2;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=1121;QR=524;RO=13;RPL=0;RPP=63.8115;RPPR=31.2394;RPR=28;RUN=1;SAF=28;SAP=63.8115;SAR=0;SRF=13;SRP=31.2394;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|1:21:2,0,19:2:80:0,19:0,756:-62.0403,-62.6423,-69.2327,0,-6.98973,-1.27016 0|1:18:6,7,4:6:241:7,4:276,162:-20.8948,0,-17.7497,-9.33974,-6.49785,-27.9972 0|1:11:5,1,5:5:203:1,5:41,203:-15.234,-13.3544,-29.7957,0,-13.3544,-15.234 dDocent_Contig_9968 10 . T C 125.408 . AB=0.0598802;ABP=283.988;AC=0;AF=0;AN=6;AO=10;CIGAR=1X2M1X;DP=217;DPB=217;DPRA=1.67;EPP=24.725;EPPR=383.018;GTI=0;LEN=1;MEANALT=4;MQM=60;MQMR=60;NS=3;NUMALT=3;ODDS=0;PAIRED=1;PAIREDR=0.982857;PAO=0;PQA=0;PQR=0;PRO=0;QA=385;QR=5991;RO=175;RPL=0;RPP=24.725;RPPR=383.018;RPR=10;RUN=1;SAF=10;SAP=24.725;SAR=0;SRF=175;SRP=383.018;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|0:67:50,5,9,3:50:1741:5,9,3:190,348,41:-13.5849,-13.0387,-153.1,0,-126.013,-138.889,-25.8932,-151.828,-138.822,-166.509 0|0:50:49,0,1,0:49:1765:0,1,0:0,39,0:0,-14.7505,-158.721,-11.1549,-155.514,-155.213,-14.7505,-158.721,-155.514,-158.721 0|0:100:76,5,8,7:76:2485:5,8,7:195,308,187:-2.4278,-9.26662,-208.407,0,-184.618,-198.243,-10.6293,-195.206,-185.944,-209.131 dDocent_Contig_9970 75 . A G 37.2958 . AB=0.25;ABP=9.52472;AC=1;AF=0.166667;AN=6;AO=3;CIGAR=1X;DP=25;DPB=25;DPRA=1.84615;EPP=9.52472;EPPR=50.7827;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=8.67362e-19;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=95;QR=574;RO=22;RPL=3;RPP=9.52472;RPPR=50.7827;RPR=0;RUN=1;SAF=3;SAP=9.52472;SAR=0;SRF=22;SRP=50.7827;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:12:9,3:9:224:3:95:-5.25233,0,-16.7925 0/0:5:5,0:5:136:0:0:0,-1.50515,-12.5097 0/0:8:8,0:8:214:0:0:0,-2.40824,-19.5242 dDocent_Contig_9972 18 . C A 40.5083 . AB=0.583333;ABP=3.73412;AC=0;AF=0;AN=6;AO=9;CIGAR=3M1X3M;DP=26;DPB=24.5714;DPRA=0;EPP=22.5536;EPPR=35.5824;GTI=0;LEN=1;MEANALT=1.33333;MQM=13.6667;MQMR=60;NS=3;NUMALT=2;ODDS=0;PAIRED=0;PAIREDR=0.933333;PAO=0;PQA=0;PQR=0;PRO=0;QA=123;QR=602;RO=15;RPL=0;RPP=22.5536;RPPR=35.5824;RPR=9;RUN=1;SAF=9;SAP=22.5536;SAR=0;SRF=15;SRP=35.5824;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|0:12:3,2,7:3:120:2,7:78,91:-5.57265,0,-9.37255,-2.4445,-5.92786,-10.2283 0|0:7:6,0,1:6:242:0,1:0,16:0,-1.80618,-21.9882,-0.802751,-21.1541,-20.8531 0|0:7:6,0,1:6:240:0,1:0,16:0,-1.80618,-21.8071,-0.802751,-20.9726,-20.6716 dDocent_Contig_9974 37 . T G 341.635 . AB=0.0740741;ABP=88.0998;AC=0;AF=0;AN=6;AO=4;CIGAR=1X2M1X;DP=62;DPB=62;DPRA=0;EPP=11.6962;EPPR=92.0407;GTI=0;LEN=1;MEANALT=2.5;MQM=60;MQMR=60;NS=3;NUMALT=2;ODDS=0;PAIRED=0;PAIREDR=0.634146;PAO=0;PQA=0;PQR=0;PRO=0;QA=159;QR=1595;RO=41;RPL=0;RPP=11.6962;RPPR=92.0407;RPR=4;RUN=1;SAF=4;SAP=11.6962;SAR=0;SRF=41;SRP=92.0407;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|0:38:23,2,12:23:893:2,12:79,464:-31.1695,-31.5912,-104.363,0,-66.8647,-69.7538 0|0:8:7,0,1:7:270:0,1:0,38:-1.38903,-3.49624,-25.6703,0,-22.5545,-22.2535 0|0:16:11,2,3:11:432:2,3:80,119:-6.48273,-3.20257,-38.1293,0,-28.9344,-34.6226 dDocent_Contig_9975 138 . G T 115.244 . AB=0.285714;ABP=11.386;AC=2;AF=0.5;AN=4;AO=6;CIGAR=1X;DP=21;DPB=21;DPRA=0;EPP=16.0391;EPPR=35.5824;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=2;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=231;QR=544;RO=15;RPL=0;RPP=16.0391;RPPR=35.5824;RPR=6;RUN=1;SAF=0;SAP=16.0391;SAR=6;SRF=0;SRP=35.5824;SRR=15;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:14:10,4:10:375:4:153:-9.92695,0,-29.8854 0/1:7:5,2:5:169:2:78:-5.29626,0,-13.4281 ./.:.:.:.:.:.:.:. dDocent_Contig_9976 132 . T A 105.535 . AB=0.304348;ABP=10.6577;AC=3;AF=0.5;AN=6;AO=7;CIGAR=1X;DP=23;DPB=23;DPRA=0;EPP=18.2106;EPPR=37.7539;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=1.73472e-18;PAIRED=0;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=244;QR=609;RO=16;RPL=0;RPP=18.2106;RPPR=37.7539;RPR=7;RUN=1;SAF=0;SAP=18.2106;SAR=7;SRF=0;SRP=37.7539;SRR=16;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:6:4,2:4:156:2:72:-5.03054,0,-12.6111 0/1:10:7,3:7:258:3:103:-6.59972,0,-20.5618 0/1:7:5,2:5:195:2:69:-4.44545,0,-15.817 dDocent_Contig_9977 32 . G C 894.761 . AB=0.388235;ABP=12.2327;AC=3;AF=0.5;AN=6;AO=33;CIGAR=1X;DP=85;DPB=85;DPRA=0;EPP=74.6689;EPPR=115.927;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=6.93889e-18;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=1328;QR=2080;RO=52;RPL=0;RPP=74.6689;RPPR=115.927;RPR=33;RUN=1;SAF=33;SAP=74.6689;SAR=0;SRF=52;SRP=115.927;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:52:37,15:37:1483:15:602:-38.8629,0,-118.064 0/1:12:2,10:2:79:10:403:-33.0171,0,-3.88488 0/1:21:13,8:13:518:8:323:-23.1171,0,-40.6449 dDocent_Contig_9978 13 . G A 1387.61 . AB=0.146789;ABP=121.126;AC=3;AF=0.5;AN=6;AO=16;CIGAR=1X3M;DP=109;DPB=109;DPRA=0;EPP=37.7539;EPPR=111.584;GTI=0;LEN=1;MEANALT=2;MQM=60;MQMR=60;NS=3;NUMALT=2;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=604;QR=1875;RO=50;RPL=0;RPP=37.7539;RPPR=111.584;RPR=16;RUN=1;SAF=16;SAP=37.7539;SAR=0;SRF=50;SRP=111.584;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|1:35:19,4,12:19:707:4,12:160,450:-31.1201,-23.6531,-80.3129,0,-44.6576,-54.2304 0|1:21:6,12,3:6:224:12,3:461,113:-36.0438,0,-14.7248,-28.5916,-9.07621,-46.0243 0|1:53:25,27,1:25:944:27,1:1032,41:-77.1199,0,-69.2119,-81.2605,-73.9544,-158.328 dDocent_Contig_9979 38 . T A 81.5125 . AB=0.162791;ABP=45.4803;AC=2;AF=0.333333;AN=6;AO=8;CIGAR=1M1I2M1X2M1X;DP=58;DPB=60;DPRA=0;EPP=20.3821;EPPR=107.241;GTI=0;LEN=1;MEANALT=1.66667;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=303;QR=1876;RO=48;RPL=0;RPP=20.3821;RPPR=107.241;RPR=8;RUN=1;SAF=8;SAP=20.3821;SAR=0;SRF=48;SRP=107.241;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|1:39:32,5:32:1258:5:185:-5.47444,0,-101.959 0|1:4:2,2:2:78:2:78:-6.19918,0,-6.19918 0|0:15:14,1:14:540:1:40:0,-0.519771,-44.9461 dDocent_Contig_9981 13 . G T 30.5917 . AB=0.2;ABP=10.8276;AC=1;AF=0.166667;AN=6;AO=2;CIGAR=1X;DP=26;DPB=26;DPRA=1.25;EPP=7.35324;EPPR=55.1256;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=0.916667;PAO=0;PQA=0;PQR=0;PRO=0;QA=80;QR=957;RO=24;RPL=0;RPP=7.35324;RPPR=55.1256;RPR=2;RUN=1;SAF=2;SAP=7.35324;SAR=0;SRF=24;SRP=55.1256;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:10:8,2:8:320:2:80:-4.58149,0,-26.1576 0/0:13:13,0:13:519:0:0:0,-3.91339,-47.0568 0/0:3:3,0:3:118:0:0:0,-0.90309,-11.0016 dDocent_Contig_9983 33 . A G 539.796 . AB=0.353846;ABP=15.0703;AC=3;AF=0.5;AN=6;AO=23;CIGAR=1X;DP=65;DPB=65;DPRA=0;EPP=52.9542;EPPR=94.2121;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=867;QR=1650;RO=42;RPL=0;RPP=52.9542;RPPR=94.2121;RPR=23;RUN=1;SAF=23;SAP=52.9542;SAR=0;SRF=42;SRP=94.2121;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:15:12,3:12:468:3:98:-4.62541,0,-37.9559 0/1:33:17,16:17:670:16:611:-45.3937,0,-50.7 0/1:17:13,4:13:512:4:158:-9.48297,0,-41.3103 dDocent_Contig_9986 7 . G A 208.717 . AB=0.4;ABP=4.74748;AC=2;AF=0.333333;AN=6;AO=8;CIGAR=1X;DP=35;DPB=35;DPRA=0.666667;EPP=20.3821;EPPR=59.4686;GTI=0;LEN=1;MEANALT=1.5;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=310;QR=867;RO=26;RPL=0;RPP=20.3821;RPPR=59.4686;RPR=8;RUN=1;SAF=8;SAP=20.3821;SAR=0;SRF=26;SRP=59.4686;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:15:15,0:15:528:0:0:0,-4.51545,-47.8461 0/1:2:1,1:1:10:1:39:-3.2945,0,-0.397936 0/1:18:10,7:10:329:7:271:-19.4942,0,-24.6801 dDocent_Contig_9988 39 . A C 56.6109 . AB=0.333333;ABP=6.62942;AC=1;AF=0.166667;AN=6;AO=6;CIGAR=1X;DP=27;DPB=27;DPRA=13;EPP=16.0391;EPPR=26.2761;GTI=0;LEN=1;MEANALT=1;MQM=26;MQMR=57.0476;NS=3;NUMALT=1;ODDS=0;PAIRED=0;PAIREDR=0.857143;PAO=0;PQA=0;PQR=0;PRO=0;QA=208;QR=778;RO=21;RPL=0;RPP=16.0391;RPPR=48.6112;RPR=6;RUN=1;SAF=0;SAP=16.0391;SAR=6;SRF=18;SRP=26.2761;SRR=3;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:15:10,5:10:352:5:173:-7.18297,0,-27.4735 0/0:1:1,0:1:38:0:0:0,-0.30103,-3.79727 0/0:11:10,1:10:388:1:35:0,-0.762705,-32.0925 dDocent_Contig_9989 127 . A G 39.7245 . AB=0.666667;ABP=3.73412;AC=1;AF=0.166667;AN=6;AO=2;CIGAR=1X3M1X;DP=21;DPB=21;DPRA=0.333333;EPP=7.35324;EPPR=44.2683;GTI=0;LEN=1;MEANALT=1;MQM=57;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=70;QR=636;RO=19;RPL=0;RPP=7.35324;RPPR=44.2683;RPR=2;RUN=1;SAF=0;SAP=7.35324;SAR=2;SRF=0;SRP=44.2683;SRR=19;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|0:10:10,0:10:333:0:0:0,-3.0103,-30.2935 0|0:8:8,0:8:270:0:0:0,-2.40824,-24.6294 0|1:3:1,2:1:33:2:70:-5.74172,0,-2.39604 dDocent_Contig_9991 123 . C A 151.107 . AB=0.297297;ABP=16.2152;AC=3;AF=0.5;AN=6;AO=11;CIGAR=1X;DP=37;DPB=37;DPRA=0;EPP=26.8965;EPPR=59.4686;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=343;QR=901;RO=26;RPL=0;RPP=26.8965;RPPR=59.4686;RPR=11;RUN=1;SAF=0;SAP=26.8965;SAR=11;SRF=0;SRP=59.4686;SRR=26;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:21:16,5:16:541:5:168:-9.12951,0,-42.6876 0/1:5:3,2:3:108:2:52:-3.43452,0,-8.57002 0/1:11:7,4:7:252:4:123:-8.06421,0,-19.7176 dDocent_Contig_9992 13 . T C 432.26 . AB=0.306122;ABP=19.0083;AC=4;AF=0.666667;AN=6;AO=17;CIGAR=1X;DP=51;DPB=51;DPRA=0;EPP=39.9253;EPPR=76.8404;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=671;QR=1288;RO=34;RPL=0;RPP=39.9253;RPPR=76.8404;RPR=17;RUN=1;SAF=17;SAP=39.9253;SAR=0;SRF=34;SRP=76.8404;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:39:27,12:27:1022:12:478:-31.6301,0,-80.5429 0/1:10:7,3:7:266:3:113:-7.52662,0,-21.291 1/1:2:0,2:0:0:2:80:-7.59179,-0.60206,0 dDocent_Contig_9993 13 . T A 153.92 . AB=0.285714;ABP=14.1779;AC=1;AF=0.166667;AN=6;AO=8;CIGAR=1X;DP=45;DPB=45;DPRA=3.29412;EPP=20.3821;EPPR=81.1833;GTI=0;LEN=1;MEANALT=1;MQM=56;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=0;PAIREDR=0.666667;PAO=0;PQA=0;PQR=0;PRO=0;QA=278;QR=1435;RO=36;RPL=0;RPP=20.3821;RPPR=81.1833;RPR=8;RUN=1;SAF=0;SAP=20.3821;SAR=8;SRF=36;SRP=81.1833;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:28:20,8:20:799:8:278:-16.9149,0,-63.7975 0/0:7:6,0:6:232:0:0:0,-1.80618,-20.8488 0/0:10:10,0:10:404:0:0:0,-3.0103,-36.7198 dDocent_Contig_9994 9 . T C 443.181 . AB=0.38;ABP=9.26414;AC=3;AF=0.5;AN=6;AO=19;CIGAR=2M1X;DP=50;DPB=50;DPRA=0;EPP=44.2683;EPPR=48.6112;GTI=0;LEN=1;MEANALT=2.66667;MQM=60;MQMR=60;NS=3;NUMALT=3;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=687;QR=750;RO=21;RPL=0;RPP=44.2683;RPPR=48.6112;RPR=19;RUN=1;SAF=19;SAP=44.2683;SAR=0;SRF=21;SRP=48.6112;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|1:21:11,0,1,9:11:388:0,1,9:0,26,317:-22.5709,-25.8823,-57.4773,-23.8527,-55.4429,-55.1418,0,-31.6747,-29.6436,-28.9655 0|1:19:7,3,2,7:7:260:3,2,7:114,62,255:-18.7276,-11.4783,-31.8618,-15.8683,-27.7959,-36.5455,0,-11.9345,-16.3239,-19.1823 0|1:10:3,2,2,3:3:102:2,2,3:74,75,115:-8.5403,-3.39262,-11.0479,-3.30071,-5.50311,-10.9567,0,-2.20023,-2.10832,-7.35532 dDocent_Contig_9995 175 . C T 179.346 . AB=0.236842;ABP=25.8679;AC=2;AF=0.333333;AN=6;AO=9;CIGAR=1X;DP=75;DPB=75;DPRA=0.513514;EPP=22.5536;EPPR=146.327;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=357;QR=2587;RO=66;RPL=9;RPP=22.5536;RPPR=146.327;RPR=0;RUN=1;SAF=0;SAP=22.5536;SAR=9;SRF=0;SRP=146.327;SRR=66;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:37:37,0:37:1464:0:0:0,-11.1381,-132.009 0/1:5:3,2:3:122:2:82:-6.27453,0,-9.86734 0/1:33:26,7:26:1001:7:275:-15.1829,0,-80.4413 dDocent_Contig_9996 10 . C T 105.785 . AB=0.163636;ABP=57.0602;AC=3;AF=0.5;AN=6;AO=9;CIGAR=1X;DP=55;DPB=55;DPRA=0;EPP=22.5536;EPPR=102.898;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=346;QR=1719;RO=46;RPL=0;RPP=22.5536;RPPR=102.898;RPR=9;RUN=1;SAF=9;SAP=22.5536;SAR=0;SRF=46;SRP=102.898;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:8:7,1:7:271:1:41:-1.68633,0,-22.3434 0/1:29:25,4:25:942:4:148:-4.94691,0,-76.3478 0/1:18:14,4:14:506:4:157:-9.08914,0,-40.4505 dDocent_Contig_9997 27 . T A 83.2193 . AB=0.25;ABP=11.6962;AC=1;AF=0.166667;AN=6;AO=4;CIGAR=1X;DP=45;DPB=45;DPRA=1.10345;EPP=11.6962;EPPR=92.0407;GTI=0;LEN=1;MEANALT=1;MQM=59;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=162;QR=1592;RO=41;RPL=0;RPP=11.6962;RPPR=92.0407;RPR=4;RUN=1;SAF=4;SAP=11.6962;SAR=0;SRF=41;SRP=92.0407;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:19:19,0:19:736:0:0:0,-5.71957,-66.5679 0/1:16:12,4:12:461:4:162:-10.1458,0,-37.0196 0/0:10:10,0:10:395:0:0:0,-3.0103,-35.909 dDocent_Contig_9998 107 . N T 62.6926 . AB=0;ABP=0;AC=2;AF=1;AN=2;AO=2;CIGAR=1X;DP=2;DPB=2;DPRA=0;EPP=7.35324;EPPR=0;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=0;NS=1;NUMALT=1;ODDS=5.99146;PAIRED=1;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=66;QR=0;RO=0;RPL=0;RPP=7.35324;RPPR=0;RPR=2;RUN=1;SAF=0;SAP=7.35324;SAR=2;SRF=0;SRP=0;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL ./.:.:.:.:.:.:.:. 1/1:2:0,2:0:0:2:66:-6.26818,-0.60206,0 ./.:.:.:.:.:.:.:. dDocent_Contig_9999 46 . C A 674.612 . AB=0.625;ABP=8.43898;AC=3;AF=0.5;AN=6;AO=25;CIGAR=1M1I5M1X1M1X;DP=40;DPB=42.7778;DPRA=0;EPP=57.2971;EPPR=35.5824;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=933;QR=590;RO=15;RPL=0;RPP=57.2971;RPPR=35.5824;RPR=25;RUN=1;SAF=25;SAP=57.2971;SAR=0;SRF=15;SRP=35.5824;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|1:8:6,2:6:241:2:74:-4.61753,0,-19.6584 0|1:24:3,21:3:119:21:783:-63.5575,0,-3.87067 0|1:8:6,2:6:230:2:76:-4.80657,0,-18.6574 dDocent_Contig_10001 7 . G A 1038.46 . AB=0.133436;ABP=763.971;AC=2;AF=0.333333;AN=6;AO=105;CIGAR=1X;DP=1066;DPB=1066;DPRA=0;EPP=231.015;EPPR=2009.49;GTI=0;LEN=1;MEANALT=2.66667;MQM=59.5524;MQMR=59.3702;NS=3;NUMALT=1;ODDS=0;PAIRED=0.838095;PAIREDR=0.86588;PAO=0;PQA=0;PQR=0;PRO=0;QA=4008;QR=30546;RO=932;RPL=0;RPP=231.015;RPPR=2026.82;RPR=105;RUN=1;SAF=105;SAP=231.015;SAR=0;SRF=930;SRP=2009.49;SRR=2;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:303:241,53:241:7643:53:2013:-92.7311,0,-594.326 0/0:414:389,18:389:13449:18:694:0,-59.9762,-1147.2 0/1:349:302,34:302:9454:34:1301:-14.6377,0,-744.884 dDocent_Contig_10002 6 . C T 99.9728 . AB=0.333333;ABP=8.07707;AC=2;AF=0.333333;AN=6;AO=7;CIGAR=1X;DP=39;DPB=39;DPRA=0.583333;EPP=10.7656;EPPR=72.4974;GTI=0;LEN=1;MEANALT=1;MQM=38.7143;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=0.285714;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=270;QR=1236;RO=32;RPL=0;RPP=18.2106;RPPR=72.4974;RPR=7;RUN=1;SAF=6;SAP=10.7656;SAR=1;SRF=32;SRP=72.4974;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:9:7,2:7:273:2:82:-3.74182,0,-22.2287 0/1:12:7,5:7:271:5:188:-9.77572,0,-21.144 0/0:18:18,0:18:692:0:0:0,-5.41854,-62.6137 dDocent_Contig_10003 13 . A G 146.572 . AB=0.333333;ABP=8.07707;AC=2;AF=0.333333;AN=6;AO=8;CIGAR=1X;DP=36;DPB=36;DPRA=0;EPP=20.3821;EPPR=55.4358;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=0.928571;PAO=0;PQA=0;PQR=0;PRO=0;QA=303;QR=1117;RO=28;RPL=0;RPP=20.3821;RPPR=63.8115;RPR=8;RUN=1;SAF=8;SAP=20.3821;SAR=0;SRF=27;SRP=55.4358;SRR=1;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:15:14,1:14:553:1:39:0,-0.618885,-46.2143 0/1:9:4,5:4:159:5:188:-14.5742,0,-11.9827 0/1:12:10,2:10:405:2:76:-3.6019,0,-33.1977 dDocent_Contig_10005 97 . G A 133.464 . AB=0.22;ABP=37.059;AC=2;AF=0.333333;AN=6;AO=11;CIGAR=1X;DP=56;DPB=56;DPRA=4.16667;EPP=26.8965;EPPR=100.727;GTI=0;LEN=1;MEANALT=1;MQM=57.6364;MQMR=60;NS=3;NUMALT=1;ODDS=3.46945e-18;PAIRED=0;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=348;QR=1459;RO=45;RPL=11;RPP=26.8965;RPPR=100.727;RPR=0;RUN=1;SAF=11;SAP=26.8965;SAR=0;SRF=45;SRP=100.727;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:41:32,9:32:1055:9:285:-13.5874,0,-82.9062 0/0:6:6,0:6:178:0:0:0,-1.80618,-16.3108 0/1:9:7,2:7:226:2:63:-3.27417,0,-17.9476 dDocent_Contig_10006 9 . T A 692.197 . AB=0.574468;ABP=5.27418;AC=3;AF=0.5;AN=6;AO=27;CIGAR=1X;DP=47;DPB=47;DPRA=0;EPP=61.6401;EPPR=44.2683;GTI=0;LEN=1;MEANALT=1.33333;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=0.925926;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=977;QR=684;RO=19;RPL=0;RPP=61.6401;RPPR=44.2683;RPR=27;RUN=1;SAF=27;SAP=61.6401;SAR=0;SRF=19;SRP=44.2683;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:18:6,12:6:230:12:432:-33.7952,0,-15.6482 0/1:13:6,6:6:192:6:229:-16.9919,0,-13.6124 0/1:16:7,9:7:262:9:316:-23.9555,0,-19.1214 dDocent_Contig_10007 1 . N G 117.064 . AB=0;ABP=0;AC=4;AF=1;AN=4;AO=3;CIGAR=1X;DP=3;DPB=3;DPRA=0;EPP=9.52472;EPPR=0;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=0;NS=2;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=118;QR=0;RO=0;RPL=0;RPP=9.52472;RPPR=0;RPR=3;RUN=1;SAF=3;SAP=9.52472;SAR=0;SRF=0;SRP=0;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL ./.:.:.:.:.:.:.:. 1/1:1:0,1:0:0:1:41:-4.09457,-0.30103,0 1/1:2:0,2:0:0:2:77:-7.30914,-0.60206,0 dDocent_Contig_10008 42 . G A 116.031 . AB=0.285714;ABP=11.386;AC=2;AF=0.333333;AN=6;AO=6;CIGAR=1X;DP=42;DPB=42;DPRA=0.5;EPP=16.0391;EPPR=81.1833;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=230;QR=1436;RO=36;RPL=0;RPP=16.0391;RPPR=81.1833;RPR=6;RUN=1;SAF=6;SAP=16.0391;SAR=0;SRF=36;SRP=81.1833;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:11:8,3:8:323:3:111:-7.04128,0,-26.1273 0/0:21:21,0:21:833:0:0:0,-6.32163,-75.2833 0/1:10:7,3:7:280:3:119:-8.08471,0,-22.5601 dDocent_Contig_10009 7 . G T 125.1 . AB=0.195122;ABP=36.112;AC=2;AF=0.333333;AN=6;AO=9;CIGAR=1X;DP=52;DPB=52;DPRA=0;EPP=22.5536;EPPR=96.3836;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=318;QR=1467;RO=43;RPL=0;RPP=22.5536;RPPR=96.3836;RPR=9;RUN=1;SAF=9;SAP=22.5536;SAR=0;SRF=43;SRP=96.3836;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:19:15,4:15:515:4:151:-8.23821,0,-40.945 0/0:11:10,1:10:364:1:11:0,-2.21133,-32.0039 0/1:22:18,4:18:588:4:156:-7.79463,0,-46.5932 dDocent_Contig_10010 142 . T A 688.586 . AB=0.446429;ABP=4.40625;AC=3;AF=0.5;AN=6;AO=25;CIGAR=1X;DP=56;DPB=56;DPRA=0;EPP=57.2971;EPPR=68.1545;GTI=0;LEN=1;MEANALT=1.33333;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=0.92;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=1001;QR=1156;RO=30;RPL=0;RPP=57.2971;RPPR=68.1545;RPR=25;RUN=1;SAF=0;SAP=57.2971;SAR=25;SRF=0;SRP=68.1545;SRR=30;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:36:16,19:16:628:19:758:-57.7357,0,-46.0441 0/1:18:13,5:13:488:5:202:-13.143,0,-38.8269 0/1:2:1,1:1:40:1:41:-3.49251,0,-3.39362 dDocent_Contig_10011 29 . A T 893.909 . AB=0.62963;ABP=10.8919;AC=3;AF=0.5;AN=6;AO=34;CIGAR=2X;DP=54;DPB=54;DPRA=0;EPP=76.8404;EPPR=46.4397;GTI=0;LEN=1;MEANALT=1;MQM=50.4118;MQMR=60;NS=3;NUMALT=1;ODDS=3.46945e-18;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=1334;QR=796;RO=20;RPL=0;RPP=76.8404;RPPR=46.4397;RPR=34;RUN=1;SAF=34;SAP=76.8404;SAR=0;SRF=20;SRP=46.4397;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|1:31:9,22:9:360:22:866:-63.1765,0,-23.4319 0|1:16:9,7:9:354:7:271:-19.8311,0,-27.403 0|1:7:2,5:2:82:5:197:-11.9062,0,-5.67247 dDocent_Contig_10012 72 . T G 143.718 . AB=0.148936;ABP=53.3238;AC=0;AF=0;AN=6;AO=7;CIGAR=1X3M1X;DP=70;DPB=70.6;DPRA=0;EPP=18.2106;EPPR=100.727;GTI=0;LEN=1;MEANALT=4;MQM=60;MQMR=60;NS=3;NUMALT=2;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=108;QR=1260;RO=45;RPL=7;RPP=18.2106;RPPR=100.727;RPR=0;RUN=1;SAF=7;SAP=18.2106;SAR=0;SRF=45;SRP=100.727;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|0:47:31,7,7:31:855:7,7:108,176:-4.44657,-6.19323,-71.7405,0,-60.1198,-65.6058 0|0:3:1,0,2:1:29:0,2:0,41:-2.99087,-3.2919,-5.6289,0,-2.59863,-1.99657 0|0:20:13,0,6:13:376:0,6:0,198:-12.3181,-16.2315,-46.1509,0,-30.1252,-28.3191 dDocent_Contig_10015 7 . G A 319.059 . AB=0.166667;ABP=118.822;AC=1;AF=0.166667;AN=6;AO=34;CIGAR=1X;DP=384;DPB=384;DPRA=0;EPP=76.8404;EPPR=516.022;GTI=0;LEN=1;MEANALT=2;MQM=60;MQMR=59.1298;NS=3;NUMALT=1;ODDS=1.38778e-17;PAIRED=0.970588;PAIREDR=0.749263;PAO=0;PQA=0;PQR=0;PRO=0;QA=1276;QR=11237;RO=339;RPL=0;RPP=76.8404;RPPR=739.139;RPR=34;RUN=1;SAF=34;SAP=76.8404;SAR=0;SRF=311;SRP=516.022;SRR=28;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:120:97,20:97:3171:20:762:-33.4288,0,-247.865 0/0:154:140,9:140:4777:9:349:0,-13.3753,-398.289 0/0:110:102,5:102:3289:5:165:0,-17.3091,-280.628 dDocent_Contig_10017 31 . A G 97.0643 . AB=0.170213;ABP=47.41;AC=3;AF=0.5;AN=6;AO=8;CIGAR=1X;DP=47;DPB=47;DPRA=0;EPP=20.3821;EPPR=87.6977;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=312;QR=1553;RO=39;RPL=0;RPP=20.3821;RPPR=87.6977;RPR=8;RUN=1;SAF=8;SAP=20.3821;SAR=0;SRF=39;SRP=87.6977;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:19:17,2:17:679:2:81:-1.96616,0,-55.7201 0/1:8:5,3:5:198:3:113:-8.13057,0,-15.7882 0/1:20:17,3:17:676:3:118:-4.98191,0,-55.1466 dDocent_Contig_10019 34 . G A 683.636 . AB=0.55814;ABP=4.27278;AC=2;AF=0.333333;AN=6;AO=25;CIGAR=1X;DP=62;DPB=62;DPRA=0;EPP=57.2971;EPPR=83.3548;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=975;QR=1473;RO=37;RPL=0;RPP=57.2971;RPPR=83.3548;RPR=25;RUN=1;SAF=25;SAP=57.2971;SAR=0;SRF=37;SRP=83.3548;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:35:17,18:17:690:18:704:-53.1414,0,-51.8932 0/1:8:2,6:2:80:6:231:-18.745,0,-5.18355 0/0:19:18,1:18:703:1:40:0,-1.72389,-59.5952 dDocent_Contig_10021 29 . A G 127.723 . AB=0.137931;ABP=102.074;AC=3;AF=0.5;AN=6;AO=12;CIGAR=1X;DP=87;DPB=87;DPRA=0;EPP=29.068;EPPR=165.871;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=475;QR=2992;RO=75;RPL=0;RPP=29.068;RPPR=165.871;RPR=12;RUN=1;SAF=12;SAP=29.068;SAR=0;SRF=75;SRP=165.871;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:29:24,5:24:965:5:196:-9.28318,0,-78.4164 0/1:44:40,4:40:1600:4:159:-1.4468,0,-130.988 0/1:14:11,3:11:427:3:120:-6.97327,0,-34.5633 dDocent_Contig_10023 59 . A T 66.6068 . AB=0.136364;ABP=53.5464;AC=1;AF=0.166667;AN=6;AO=6;CIGAR=1X;DP=79;DPB=79;DPRA=2.51429;EPP=16.0391;EPPR=161.528;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=234;QR=2888;RO=73;RPL=6;RPP=16.0391;RPPR=161.528;RPR=0;RUN=1;SAF=6;SAP=16.0391;SAR=0;SRF=73;SRP=161.528;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:44:38,6:38:1503:6:234:-8.18355,0,-122.265 0/0:9:9,0:9:360:0:0:0,-2.70927,-32.764 0/0:26:26,0:26:1025:0:0:0,-7.82678,-92.5449 dDocent_Contig_10024 12 . T C 250.183 . AB=0.488372;ABP=3.0608;AC=3;AF=0.5;AN=6;AO=21;CIGAR=1X;DP=43;DPB=43;DPRA=0;EPP=48.6112;EPPR=50.7827;GTI=0;LEN=1;MEANALT=1;MQM=23;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=0;PAIREDR=0.818182;PAO=0;PQA=0;PQR=0;PRO=0;QA=822;QR=868;RO=22;RPL=0;RPP=48.6112;RPPR=50.7827;RPR=21;RUN=1;SAF=21;SAP=48.6112;SAR=0;SRF=22;SRP=50.7827;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:15:11,4:11:427:4:158:-3.7651,0,-34.2642 0/1:11:4,7:4:162:7:276:-8.80924,0,-11.6554 0/1:17:7,10:7:279:10:388:-17.9644,0,-20.362 dDocent_Contig_10026 22 . T C 684.661 . AB=0.346154;ABP=19.0458;AC=3;AF=0.5;AN=6;AO=27;CIGAR=1X;DP=78;DPB=78;DPRA=0;EPP=61.6401;EPPR=113.755;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=0.921569;PAO=0;PQA=0;PQR=0;PRO=0;QA=1071;QR=2014;RO=51;RPL=0;RPP=61.6401;RPPR=113.755;RPR=27;RUN=1;SAF=27;SAP=61.6401;SAR=0;SRF=51;SRP=113.755;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:29:21,8:21:826:8:313:-19.7992,0,-65.922 0/1:16:11,5:11:440:5:200:-13.5619,0,-35.1386 0/1:33:19,14:19:748:14:558:-40.6278,0,-57.7092 dDocent_Contig_10028 18 . A C 108.651 . AB=0.170213;ABP=47.41;AC=2;AF=0.333333;AN=6;AO=8;CIGAR=1X1M1X2M1X;DP=113;DPB=113;DPRA=0.356061;EPP=20.3821;EPPR=228.843;GTI=0;LEN=1;MEANALT=1.5;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=307;QR=4007;RO=104;RPL=0;RPP=20.3821;RPPR=228.843;RPR=8;RUN=1;SAF=8;SAP=20.3821;SAR=0;SRF=104;SRP=228.843;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|0:66:66,0:66:2554:0:0:0,-19.868,-230.044 0|1:8:6,2:6:227:2:78:-4.99454,0,-18.3844 0|1:39:32,6:32:1226:6:229:-9.39326,0,-99.0838 dDocent_Contig_10029 10 . T C 163.844 . AB=0.157895;ABP=99.5837;AC=3;AF=0.5;AN=6;AO=15;CIGAR=1X;DP=95;DPB=95;DPRA=0;EPP=35.5824;EPPR=176.728;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=58.875;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=0.975;PAO=0;PQA=0;PQR=0;PRO=0;QA=548;QR=2787;RO=80;RPL=0;RPP=35.5824;RPPR=176.728;RPR=15;RUN=1;SAF=15;SAP=35.5824;SAR=0;SRF=80;SRP=176.728;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:33:29,4:29:998:4:129:-1.9906,0,-75.56 0/1:28:24,4:24:798:4:161:-6.44664,0,-63.687 0/1:34:27,7:27:991:7:258:-13.3381,0,-79.2525 dDocent_Contig_10030 7 . G A 221.569 . AB=0.45;ABP=3.44459;AC=2;AF=0.333333;AN=6;AO=9;CIGAR=1X2M1I11M;DP=35;DPB=35.6429;DPRA=0.666667;EPP=22.5536;EPPR=57.2971;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=344;QR=922;RO=25;RPL=0;RPP=22.5536;RPPR=57.2971;RPR=9;RUN=1;SAF=9;SAP=22.5536;SAR=0;SRF=25;SRP=57.2971;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|1:7:2,5:2:75:5:191:-15.4514,0,-5.01313 0|0:15:14,0:14:521:0:0:0,-4.21442,-47.1035 0|1:13:9,4:9:326:4:153:-10.2282,0,-25.7705 dDocent_Contig_10031 22 . A T 496.797 . AB=0.212389;ABP=84.2003;AC=3;AF=0.5;AN=6;AO=24;CIGAR=1M1X2M11I2M;DP=113;DPB=154.667;DPRA=0;EPP=55.1256;EPPR=172.385;GTI=0;LEN=1;MEANALT=2.33333;MQM=60;MQMR=60;NS=3;NUMALT=2;ODDS=0;PAIRED=0.958333;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=951;QR=3078;RO=78;RPL=0;RPP=55.1256;RPPR=172.385;RPR=24;RUN=1;SAF=24;SAP=55.1256;SAR=0;SRF=78;SRP=172.385;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|1:58:38,12,7:38:1509:12,7:473,257:-27.4895,0,-120.637,-17.9317,-103.247,-140.054 0|1:12:6,6,0:6:234:6,0:238,0:-18.182,0,-17.8165,-19.9882,-19.6227,-39.2179 0|1:43:34,6,0:34:1335:6,0:240,0:-9.53107,0,-107.979,-19.7661,-109.785,-129.557 dDocent_Contig_10032 9 . G C 3660.25 . AB=0.791667;ABP=91.6788;AC=4;AF=0.666667;AN=6;AO=128;CIGAR=1M1X3M;DP=157;DPB=157;DPRA=0;EPP=280.959;EPPR=46.4397;GTI=0;LEN=1;MEANALT=2;MQM=60;MQMR=60;NS=3;NUMALT=2;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=4519;QR=674;RO=20;RPL=0;RPP=280.959;RPPR=46.4397;RPR=128;RUN=1;SAF=128;SAP=280.959;SAR=0;SRF=20;SRP=46.4397;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|1:64:7,3,54:7:243:3,54:116,1932:-155.374,-147.952,-166.801,0,-10.1858,-3.46958 1|1:37:1,3,33:1:28:3,33:119,1183:-103.874,-94.3758,-95.6891,-7.74434,-0.0507312,0 0|1:56:12,3,41:12:403:3,41:111,1404:-110.294,-104.825,-136.56,0,-23.5268,-20.2707 dDocent_Contig_10034 28 . G A 319.917 . AB=0.48;ABP=3.09716;AC=2;AF=0.333333;AN=6;AO=12;CIGAR=1X1M1X;DP=33;DPB=33;DPRA=1.5625;EPP=29.068;EPPR=48.6112;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=1.73472e-18;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=470;QR=811;RO=21;RPL=0;RPP=29.068;RPPR=48.6112;RPR=12;RUN=1;SAF=12;SAP=29.068;SAR=0;SRF=21;SRP=48.6112;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|1:16:11,5:11:431:5:193:-12.9233,0,-34.3272 0|0:8:8,0:8:306:0:0:0,-2.40824,-27.8951 0|1:9:2,7:2:74:7:277:-22.5905,0,-4.31475 dDocent_Contig_10035 17 . C A 234.842 . AB=0.357143;ABP=7.97367;AC=3;AF=0.5;AN=6;AO=10;CIGAR=1X;DP=28;DPB=28;DPRA=0;EPP=24.725;EPPR=42.0968;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=403;QR=719;RO=18;RPL=0;RPP=24.725;RPPR=42.0968;RPR=10;RUN=1;SAF=10;SAP=24.725;SAR=0;SRF=18;SRP=42.0968;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:11:7,4:7:282:4:161:-11.5642,0,-22.4416 0/1:5:2,3:2:74:3:121:-9.77505,0,-5.52062 0/1:12:9,3:9:363:3:121:-7.66784,0,-29.4221 dDocent_Contig_10036 15 . T C 4065.26 . AB=0.735955;ABP=89.0884;AC=3;AF=0.5;AN=6;AO=131;CIGAR=1X;DP=178;DPB=178;DPRA=0;EPP=287.473;EPPR=105.07;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=5166;QR=1838;RO=47;RPL=0;RPP=287.473;RPPR=105.07;RPR=131;RUN=1;SAF=131;SAP=287.473;SAR=0;SRF=47;SRP=105.07;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:109:18,91:18:713:91:3570:-288.544,0,-31.6881 0/1:12:8,4:8:310:4:160:-11.1706,0,-24.6508 0/1:57:21,36:21:815:36:1436:-112.334,0,-56.5134 dDocent_Contig_10037 70 . T C 60.2016 . AB=0.2;ABP=18.6449;AC=1;AF=0.166667;AN=6;AO=4;CIGAR=1X;DP=50;DPB=50;DPRA=1.33333;EPP=11.6962;EPPR=102.898;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=150;QR=1640;RO=46;RPL=4;RPP=11.6962;RPPR=102.898;RPR=0;RUN=1;SAF=4;SAP=11.6962;SAR=0;SRF=46;SRP=102.898;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:16:16,0:16:595:0:0:0,-4.81648,-53.8782 0/0:14:14,0:14:496:0:0:0,-4.21442,-44.9669 0/1:20:16,4:16:549:4:150:-7.84407,0,-43.7078 dDocent_Contig_10039 110 . A T 333.913 . AB=0.310345;ABP=21.1309;AC=3;AF=0.5;AN=6;AO=18;CIGAR=1X;DP=58;DPB=58;DPRA=0;EPP=42.0968;EPPR=89.8692;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=615;QR=1348;RO=40;RPL=0;RPP=42.0968;RPPR=89.8692;RPR=18;RUN=1;SAF=0;SAP=42.0968;SAR=18;SRF=0;SRP=89.8692;SRR=40;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:33:29,4:29:967:4:140:-3.01094,0,-77.4001 0/1:6:4,2:4:138:2:68:-4.6517,0,-10.9542 0/1:19:7,12:7:243:12:407:-31.2373,0,-16.4893 dDocent_Contig_10041 13 . T G 287.831 . AB=0.16129;ABP=95.6831;AC=1;AF=0.166667;AN=6;AO=15;CIGAR=1X2M1X;DP=93;DPB=93;DPRA=0;EPP=35.5824;EPPR=150.67;GTI=0;LEN=1;MEANALT=2;MQM=60;MQMR=60;NS=3;NUMALT=2;ODDS=1.38778e-17;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=576;QR=2625;RO=68;RPL=0;RPP=35.5824;RPPR=150.67;RPR=15;RUN=1;SAF=15;SAP=35.5824;SAR=0;SRF=68;SRP=150.67;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|1:53:44,8,1:44:1692:8,1:304,41:-11.6583,0,-136.47,-21.5162,-135.493,-160.122 0|0:12:6,2,4:6:229:2,4:74,162:-11.5751,-7.33983,-25.512,0,-12.7466,-17.5927 0|0:28:18,5,5:18:704:5,5:198,199:-10.9687,-0.0911855,-56.4636,0,-41.581,-56.3739 dDocent_Contig_10042 9 . G C 55.1072 . AB=0.16129;ABP=33.9012;AC=1;AF=0.166667;AN=6;AO=9;CIGAR=1X;DP=132;DPB=132;DPRA=0;EPP=22.5536;EPPR=270.101;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=330;QR=4252;RO=123;RPL=0;RPP=22.5536;RPPR=270.101;RPR=9;RUN=1;SAF=9;SAP=22.5536;SAR=0;SRF=123;SRP=270.101;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:31:26,5:26:889:5:178:-7.0336,0,-70.9712 0/0:71:68,3:68:2418:3:115:0,-10.6482,-207.111 0/0:30:29,1:29:945:1:37:0,-5.33307,-81.636 dDocent_Contig_10044 37 . A T 245.406 . AB=0.277778;ABP=18.4519;AC=1;AF=0.166667;AN=6;AO=10;CIGAR=1X;DP=71;DPB=71;DPRA=2.05714;EPP=24.725;EPPR=135.47;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=406;QR=2413;RO=61;RPL=0;RPP=24.725;RPPR=135.47;RPR=10;RUN=1;SAF=10;SAP=24.725;SAR=0;SRF=61;SRP=135.47;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:36:26,10:26:1053:10:406:-26.0635,0,-84.222 0/0:14:14,0:14:534:0:0:0,-4.21442,-48.3946 0/0:21:21,0:21:826:0:0:0,-6.32163,-74.6504 dDocent_Contig_10045 162 . C T 44.1657 . AB=0.16129;ABP=33.9012;AC=2;AF=0.333333;AN=6;AO=5;CIGAR=1X;DP=33;DPB=33;DPRA=7.75;EPP=13.8677;EPPR=10.7656;GTI=0;LEN=1;MEANALT=1;MQM=40;MQMR=40;NS=3;NUMALT=1;ODDS=1.73472e-18;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=190;QR=997;RO=28;RPL=5;RPP=13.8677;RPPR=10.7656;RPR=0;RUN=1;SAF=0;SAP=13.8677;SAR=5;SRF=0;SRP=63.8115;SRR=28;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:14:11,3:11:389:3:115:-5.88036,0,-29.7339 0/0:2:2,0:2:68:0:0:0,-0.60206,-6.27164 0/1:17:15,2:15:540:2:75:-1.63811,0,-41.7577 dDocent_Contig_10046 8 . A T 346.428 . AB=0.153846;ABP=43.6001;AC=1;AF=0.166667;AN=6;AO=6;CIGAR=2X;DP=60;DPB=60;DPRA=39;EPP=16.0391;EPPR=89.8692;GTI=0;LEN=1;MEANALT=2;MQM=60;MQMR=60;NS=3;NUMALT=2;ODDS=0;PAIRED=0;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=232;QR=1342;RO=40;RPL=0;RPP=16.0391;RPPR=89.8692;RPR=6;RUN=1;SAF=6;SAP=16.0391;SAR=0;SRF=40;SRP=89.8692;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|1:39:30,6,3:30:1012:6,3:232,33:-10.2099,0,-80.3958,-17.266,-80.1558,-98.3174 0|0:1:1,0,0:1:39:0,0:0,0:0,-0.30103,-3.89656,-0.30103,-3.89656,-3.89656 0|0:20:9,0,11:9:291:0,11:0,374:-27.9543,-30.6636,-54.1247,0,-23.7918,-20.4804 dDocent_Contig_10047 112 . G A 188.927 . AB=0.37037;ABP=6.95112;AC=2;AF=0.333333;AN=6;AO=10;CIGAR=1X;DP=30;DPB=30;DPRA=4.5;EPP=24.725;EPPR=46.4397;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=0;PAIREDR=0.9;PAO=0;PQA=0;PQR=0;PRO=0;QA=332;QR=678;RO=20;RPL=0;RPP=24.725;RPPR=46.4397;RPR=10;RUN=1;SAF=0;SAP=24.725;SAR=10;SRF=0;SRP=46.4397;SRR=20;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:3:3,0:3:105:0:0:0,-0.90309,-9.79616 0/1:11:8,3:8:272:3:105:-6.48483,0,-21.5003 0/1:16:9,7:9:301:7:227:-15.9305,0,-22.5984 dDocent_Contig_10048 67 . C T 243.834 . AB=0.185185;ABP=72.7387;AC=2;AF=0.333333;AN=6;AO=16;CIGAR=1X;DP=104;DPB=104;DPRA=0;EPP=37.7539;EPPR=194.1;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=6.93889e-18;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=613;QR=3417;RO=88;RPL=16;RPP=37.7539;RPPR=194.1;RPR=0;RUN=1;SAF=16;SAP=37.7539;SAR=0;SRF=88;SRP=194.1;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:23:22,1:22:868:1:41:0,-2.82912,-74.3337 0/1:52:40,12:40:1543:12:455:-25.6394,0,-123.467 0/1:29:26,3:26:1006:3:117:-2.18051,0,-82.1209 dDocent_Contig_10049 12 . G A 38.5851 . AB=0.115385;ABP=69.8248;AC=2;AF=0.333333;AN=6;AO=6;CIGAR=1X;DP=80;DPB=80;DPRA=0.928571;EPP=16.0391;EPPR=163.699;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=3.46945e-18;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=235;QR=2771;RO=74;RPL=0;RPP=16.0391;RPPR=163.699;RPR=6;RUN=1;SAF=6;SAP=16.0391;SAR=0;SRF=74;SRP=163.699;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:28:28,0:28:1076:0:0:0,-8.42884,-97.1386 0/1:34:31,3:31:1144:3:116:-0.582516,0,-93.0184 0/1:18:15,3:15:551:3:119:-5.67685,0,-44.4995 dDocent_Contig_10050 7 . G T 130.174 . AB=0.269231;ABP=15.0369;AC=3;AF=0.5;AN=6;AO=7;CIGAR=1X;DP=26;DPB=26;DPRA=0;EPP=18.2106;EPPR=44.2683;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=265;QR=633;RO=19;RPL=0;RPP=18.2106;RPPR=44.2683;RPR=7;RUN=1;SAF=7;SAP=18.2106;SAR=0;SRF=19;SRP=44.2683;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:14:9,5:9:273:5:193:-13.5269,0,-20.6449 0/1:9:8,1:8:289:1:33:-0.589865,0,-23.6458 0/1:3:2,1:2:71:1:39:-2.99347,0,-5.83799 dDocent_Contig_10051 27 . A T 471.872 . AB=0.289855;ABP=29.4771;AC=3;AF=0.5;AN=6;AO=20;CIGAR=1X;DP=69;DPB=69;DPRA=0;EPP=46.4397;EPPR=109.412;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=804;QR=1919;RO=49;RPL=0;RPP=46.4397;RPPR=109.412;RPR=20;RUN=1;SAF=20;SAP=46.4397;SAR=0;SRF=49;SRP=109.412;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:31:21,10:21:833:10:403:-27.2981,0,-65.9552 0/1:23:17,6:17:676:6:237:-14.7774,0,-54.2479 0/1:15:11,4:11:410:4:164:-10.6344,0,-32.7146 dDocent_Contig_10052 9 . G T 440.036 . AB=0.4;ABP=7.35324;AC=2;AF=0.333333;AN=6;AO=20;CIGAR=1X;DP=75;DPB=75;DPRA=1;EPP=46.4397;EPPR=122.441;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=58.9091;NS=3;NUMALT=1;ODDS=0;PAIRED=0.95;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=688;QR=1978;RO=55;RPL=0;RPP=46.4397;RPPR=122.441;RPR=20;RUN=1;SAF=20;SAP=46.4397;SAR=0;SRF=55;SRP=122.441;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:25:25,0:25:916:0:0:0,-7.52575,-82.7395 0/1:25:9,16:9:340:16:548:-42.1096,0,-22.8143 0/1:25:21,4:21:722:4:140:-5.41686,0,-57.7625 dDocent_Contig_10053 44 . G A 101.191 . AB=0.170732;ABP=41.6201;AC=2;AF=0.333333;AN=6;AO=7;CIGAR=1X;DP=43;DPB=43;DPRA=10.25;EPP=18.2106;EPPR=81.1833;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=279;QR=1425;RO=36;RPL=0;RPP=18.2106;RPPR=81.1833;RPR=7;RUN=1;SAF=7;SAP=18.2106;SAR=0;SRF=36;SRP=81.1833;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:23:18,5:18:706:5:200:-11.4564,0,-56.9401 0/0:2:2,0:2:80:0:0:0,-0.60206,-7.59157 0/1:18:16,2:16:639:2:79:-2.0787,0,-52.4269 dDocent_Contig_10054 7 . G C 177.715 . AB=0.180328;ABP=57.1547;AC=2;AF=0.333333;AN=6;AO=12;CIGAR=1X;DP=112;DPB=112;DPRA=0;EPP=29.068;EPPR=213.643;GTI=0;LEN=1;MEANALT=1.66667;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=0.896907;PAO=0;PQA=0;PQR=0;PRO=0;QA=467;QR=3024;RO=97;RPL=0;RPP=29.068;RPPR=213.643;RPR=12;RUN=1;SAF=12;SAP=29.068;SAR=0;SRF=97;SRP=213.643;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:54:43,9:43:1304:9:350:-15.9981,0,-101.784 0/1:7:5,2:5:148:2:78:-5.29626,0,-11.5051 0/0:51:49,1:49:1572:1:39:0,-11.4577,-137.916 dDocent_Contig_10055 7 . G A 143.322 . AB=0.135135;ABP=131.362;AC=3;AF=0.5;AN=6;AO=15;CIGAR=1X;DP=111;DPB=111;DPRA=0;EPP=35.5824;EPPR=209.3;GTI=0;LEN=1;MEANALT=1.33333;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=572;QR=2934;RO=95;RPL=0;RPP=35.5824;RPPR=209.3;RPR=15;RUN=1;SAF=15;SAP=35.5824;SAR=0;SRF=95;SRP=209.3;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:68:61,7:61:1809:7:271:-4.28627,0,-142.561 0/1:29:25,3:25:817:3:108:-1.47364,0,-65.2718 0/1:14:9,5:9:308:5:193:-13.5271,0,-23.8286 dDocent_Contig_10057 7 . G A 178.152 . AB=0.219512;ABP=31.0276;AC=1;AF=0.166667;AN=6;AO=9;CIGAR=1X;DP=62;DPB=62;DPRA=3.90476;EPP=22.5536;EPPR=115.927;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=348;QR=1674;RO=52;RPL=0;RPP=22.5536;RPPR=115.927;RPR=9;RUN=1;SAF=9;SAP=22.5536;SAR=0;SRF=52;SRP=115.927;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:41:32,9:32:1063:9:348:-19.3381,0,-83.597 0/0:5:5,0:5:168:0:0:0,-1.50515,-15.4424 0/0:16:15,0:15:443:0:0:0,-4.51545,-40.0275 dDocent_Contig_10059 40 . G C 75.7924 . AB=0;ABP=0;AC=2;AF=0.333333;AN=6;AO=2;CIGAR=1X;DP=21;DPB=21;DPRA=0.210526;EPP=7.35324;EPPR=44.2683;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=0;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=78;QR=756;RO=19;RPL=0;RPP=7.35324;RPPR=44.2683;RPR=2;RUN=1;SAF=2;SAP=7.35324;SAR=0;SRF=19;SRP=44.2683;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:11:11,0:11:431:0:0:0,-3.31133,-39.1421 1/1:2:0,2:0:0:2:78:-7.40278,-0.60206,0 0/0:8:8,0:8:325:0:0:0,-2.40824,-29.6191 dDocent_Contig_10060 139 . G A 173.529 . AB=0.257143;ABP=20.9405;AC=2;AF=0.333333;AN=6;AO=9;CIGAR=1X;DP=42;DPB=42;DPRA=2.5;EPP=22.5536;EPPR=74.6689;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=341;QR=1223;RO=33;RPL=0;RPP=22.5536;RPPR=74.6689;RPR=9;RUN=1;SAF=0;SAP=22.5536;SAR=9;SRF=0;SRP=74.6689;SRR=33;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:7:7,0:7:267:0:0:0,-2.10721,-24.3929 0/1:17:14,3:14:528:3:107:-4.863,0,-42.743 0/1:18:12,6:12:428:6:234:-16.0126,0,-33.4348 dDocent_Contig_10062 58 . G A 254.564 . AB=0.282051;ABP=19.1015;AC=2;AF=0.333333;AN=6;AO=11;CIGAR=1X;DP=66;DPB=66;DPRA=0.722222;EPP=26.8965;EPPR=122.441;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=3.46945e-18;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=444;QR=2193;RO=55;RPL=11;RPP=26.8965;RPPR=122.441;RPR=0;RUN=1;SAF=11;SAP=26.8965;SAR=0;SRF=55;SRP=122.441;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:27:27,0:27:1084:0:0:0,-8.12781,-97.8477 0/1:15:10,5:10:392:5:202:-14.0466,0,-31.1207 0/1:24:18,6:18:717:6:242:-14.9326,0,-57.6296 dDocent_Contig_10063 8 . A C 67.6273 . AB=0.0322581;ABP=238.65;AC=0;AF=0;AN=6;AO=13;CIGAR=1X4M;DP=342;DPB=342;DPRA=0;EPP=31.2394;EPPR=613.194;GTI=0;LEN=1;MEANALT=5;MQM=60;MQMR=59.5445;NS=3;NUMALT=4;ODDS=0;PAIRED=0.307692;PAIREDR=0.708185;PAO=0;PQA=0;PQR=0;PRO=0;QA=461;QR=10258;RO=281;RPL=0;RPP=31.2394;RPPR=613.194;RPR=13;RUN=1;SAF=13;SAP=31.2394;SAR=0;SRF=281;SRP=613.194;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|0:78:63,4,0,0,7:63:2291:4,0,0,7:145,0,0,260:-2.29124,-9.41659,-195.301,-21.2561,-196.505,-208.341,-21.2561,-196.505,-208.341,-208.341,0,-175.263,-187.099,-187.099,-184.992 0|0:140:119,0,7,9,2:119:4399:0,7,9,2:0,259,317,77:0,-35.8226,-394.706,-14.6964,-373.586,-371.478,-10.0213,-368.902,-347.781,-366.192,-29.4983,-388.385,-367.264,-362.58,-387.783 0|0:124:99,0,0,4,12:99:3568:0,0,4,12:0,0,144,460:-7.92601,-37.728,-327.612,-37.728,-327.612,-327.612,-25.9846,-315.865,-315.865,-314.661,0,-289.888,-289.888,-278.142,-286.276 dDocent_Contig_10064 27 . G A 477.326 . AB=0.373134;ABP=12.3768;AC=3;AF=0.5;AN=6;AO=25;CIGAR=1M3I2M1X;DP=67;DPB=85.75;DPRA=0;EPP=57.2971;EPPR=94.2121;GTI=0;LEN=1;MEANALT=1;MQM=33.36;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=0;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=978;QR=1680;RO=42;RPL=0;RPP=57.2971;RPPR=94.2121;RPR=25;RUN=1;SAF=25;SAP=57.2971;SAR=0;SRF=42;SRP=94.2121;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|1:15:8,7:8:318:7:281:-16.6353,0,-24.4715 0|1:18:11,7:11:446:7:261:-14.5936,0,-35.0774 0|1:34:23,11:23:916:11:436:-22.0266,0,-72.5117 dDocent_Contig_10065 61 . G A 1241.67 . AB=0.45098;ABP=5.13919;AC=3;AF=0.5;AN=6;AO=46;CIGAR=1X;DP=102;DPB=102;DPRA=0;EPP=102.898;EPPR=124.613;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=1771;QR=2191;RO=56;RPL=46;RPP=102.898;RPPR=124.613;RPR=0;RUN=1;SAF=46;SAP=102.898;SAR=0;SRF=56;SRP=124.613;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:42:25,17:25:964:17:654:-46.5439,0,-74.4025 0/1:30:14,16:14:545:16:598:-45.1191,0,-40.357 0/1:30:17,13:17:682:13:519:-38.0274,0,-52.6769 dDocent_Contig_10066 27 . G A 3726.1 . AB=0.649351;ABP=32.8469;AC=4;AF=0.666667;AN=6;AO=119;CIGAR=7M1X2M;DP=173;DPB=167.4;DPRA=0;EPP=261.416;EPPR=105.07;GTI=0;LEN=1;MEANALT=1.33333;MQM=60;MQMR=60;NS=3;NUMALT=2;ODDS=1.38778e-17;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=4667;QR=1832;RO=47;RPL=0;RPP=261.416;RPPR=105.07;RPR=119;RUN=1;SAF=119;SAP=261.416;SAR=0;SRF=47;SRP=105.07;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|1:101:34,7,60:34:1318:7,60:256,2341:-182.189,-171.512,-277.675,0,-87.3783,-90.2273 1|1:19:0,0,19:0:0:0,19:0,760:-68.7229,-68.7229,-68.7229,-5.71957,-5.71957,0 0|1:53:13,0,40:13:514:0,40:0,1566:-125.221,-129.135,-171.436,0,-42.6954,-30.6542 dDocent_Contig_10067 113 . T C 110.098 . AB=0.555556;ABP=3.25157;AC=1;AF=0.166667;AN=6;AO=5;CIGAR=1X;DP=58;DPB=58;DPRA=0.367347;EPP=13.8677;EPPR=118.098;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=46.8868;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=169;QR=1784;RO=53;RPL=0;RPP=13.8677;RPPR=118.098;RPR=5;RUN=1;SAF=0;SAP=13.8677;SAR=5;SRF=0;SRP=118.098;SRR=53;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:23:23,0:23:765:0:0:0,-6.92369,-66.1138 0/0:26:26,0:26:879:0:0:0,-7.82678,-68.2775 0/1:9:4,5:4:140:5:169:-12.8337,0,-8.64021 dDocent_Contig_10068 17 . T A 256.732 . AB=0.194444;ABP=61.3988;AC=2;AF=0.333333;AN=6;AO=14;CIGAR=1X;DP=92;DPB=92;DPRA=1.8;EPP=33.4109;EPPR=172.385;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=59.0769;NS=3;NUMALT=1;ODDS=0;PAIRED=0.5;PAIREDR=0.923077;PAO=0;PQA=0;PQR=0;PRO=0;QA=557;QR=3135;RO=78;RPL=0;RPP=33.4109;RPPR=172.385;RPR=14;RUN=1;SAF=14;SAP=33.4109;SAR=0;SRF=78;SRP=172.385;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:35:27,8:27:1088:8:313:-17.9954,0,-87.1136 0/0:20:20,0:20:805:0:0:0,-6.0206,-72.7661 0/1:37:31,6:31:1242:6:244:-11.2007,0,-100.114 dDocent_Contig_10069 8 . A T 481.441 . AB=0.130841;ABP=129.666;AC=0;AF=0;AN=6;AO=14;CIGAR=2X;DP=111;DPB=111;DPRA=0;EPP=33.4109;EPPR=155.013;GTI=0;LEN=1;MEANALT=2;MQM=60;MQMR=60;NS=3;NUMALT=2;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=469;QR=2365;RO=70;RPL=0;RPP=33.4109;RPPR=155.013;RPR=14;RUN=1;SAF=14;SAP=33.4109;SAR=0;SRF=70;SRP=155.013;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|0:65:41,8,16:41:1331:8,16:260,502:-27.99,-19.3494,-124.339,0,-86.411,-102.574 0|0:4:1,0,3:1:34:0,3:0,116:-9.61358,-9.91461,-12.661,0,-3.09788,-2.19479 0|0:42:28,6,8:28:1000:6,8:209,298:-15.9795,-7.42684,-87.1258,0,-64.534,-79.1161 dDocent_Contig_10070 11 . A T 124.362 . AB=0.18;ABP=47.4821;AC=3;AF=0.5;AN=6;AO=9;CIGAR=1X;DP=50;DPB=50;DPRA=0;EPP=22.5536;EPPR=92.0407;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=354;QR=1584;RO=41;RPL=0;RPP=22.5536;RPPR=92.0407;RPR=9;RUN=1;SAF=9;SAP=22.5536;SAR=0;SRF=41;SRP=92.0407;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:33:29,4:29:1142:4:154:-4.29838,0,-93.1299 0/1:6:4,2:4:155:2:79:-5.69106,0,-12.5171 0/1:11:8,3:8:287:3:121:-7.96887,0,-22.8558 dDocent_Contig_10072 15 . T C 568.508 . AB=0.0466321;ABP=347.577;AC=0;AF=0;AN=6;AO=9;CIGAR=1M1X5M;DP=304;DPB=311.429;DPRA=0;EPP=22.5536;EPPR=417.929;GTI=0;LEN=1;MEANALT=5;MQM=59.1111;MQMR=57.7339;NS=3;NUMALT=2;ODDS=0;PAIRED=1;PAIREDR=0.781116;PAO=0;PQA=0;PQR=0;PRO=0;QA=358;QR=9179;RO=233;RPL=0;RPP=22.5536;RPPR=508.963;RPR=9;RUN=1;SAF=9;SAP=22.5536;SAR=0;SRF=222;SRP=417.929;SRR=11;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|0:111:91,11,0:91:3574:11,0:401,0:-4.92556,0,-276.771,-32.3193,-280.083,-312.405 0|0:74:58,11,5:58:2283:11,5:424,195:-16.8505,0,-178.388,-18.2947,-165.686,-198.498 0|0:119:84,22,4:84:3322:22,4:819,163:-40.5975,0,-266.533,-52.4319,-259.708,-324.389 dDocent_Contig_10073 51 . A G 32.966 . AB=0.166667;ABP=20.3821;AC=1;AF=0.166667;AN=6;AO=4;CIGAR=1X;DP=41;DPB=41;DPRA=2.0625;EPP=11.6962;EPPR=83.3548;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=1.73472e-18;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=138;QR=1455;RO=37;RPL=4;RPP=11.6962;RPPR=83.3548;RPR=0;RUN=1;SAF=4;SAP=11.6962;SAR=0;SRF=37;SRP=83.3548;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:15:14,1:14:563:1:25:0,-2.01559,-48.5131 0/1:18:15,3:15:566:3:113:-5.12027,0,-45.8475 0/0:8:8,0:8:326:0:0:0,-2.40824,-29.7099 dDocent_Contig_10074 68 . T G 33.229 . AB=0.157895;ABP=22.325;AC=2;AF=0.333333;AN=6;AO=3;CIGAR=1X;DP=30;DPB=30;DPRA=0.863636;EPP=9.52472;EPPR=59.4686;GTI=0;LEN=1;MEANALT=1.5;MQM=54.3333;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=0.666667;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=115;QR=953;RO=26;RPL=3;RPP=9.52472;RPPR=59.4686;RPR=0;RUN=1;SAF=3;SAP=9.52472;SAR=0;SRF=26;SRP=59.4686;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:7:4,2:4:153:2:74:-4.84285,0,-11.9545 0/0:11:11,0:11:412:0:0:0,-3.31133,-37.4258 0/1:12:11,1:11:388:1:41:-0.275211,0,-31.6392 dDocent_Contig_10075 117 . A G 470.919 . AB=0.385965;ABP=9.44853;AC=3;AF=0.5;AN=6;AO=22;CIGAR=1X;DP=57;DPB=57;DPRA=0;EPP=50.7827;EPPR=79.0118;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=764;QR=1197;RO=35;RPL=0;RPP=50.7827;RPPR=79.0118;RPR=22;RUN=1;SAF=0;SAP=50.7827;SAR=22;SRF=0;SRP=79.0118;SRR=35;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:17:10,7:10:330:7:237:-16.5427,0,-24.9027 0/1:23:12,11:12:422:11:386:-28.1525,0,-31.3914 0/1:17:13,4:13:445:4:141:-7.91952,0,-35.2584 dDocent_Contig_10076 16 . G C 302.463 . AB=0.304348;ABP=18.305;AC=3;AF=0.5;AN=6;AO=14;CIGAR=1X;DP=46;DPB=46;DPRA=0;EPP=33.4109;EPPR=72.4974;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=521;QR=1261;RO=32;RPL=0;RPP=33.4109;RPPR=72.4974;RPR=14;RUN=1;SAF=14;SAP=33.4109;SAR=0;SRF=32;SRP=72.4974;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:24:22,2:22:854:2:80:-0.367071,0,-69.9354 0/1:8:3,5:3:122:5:190:-15.0547,0,-8.96425 0/1:14:7,7:7:285:7:251:-18.7111,0,-21.81 dDocent_Contig_10078 198 . C T 743.763 . AB=0.0714286;ABP=47.6806;AC=0;AF=0;AN=6;AO=2;CIGAR=2X;DP=68;DPB=68;DPRA=0;EPP=7.35324;EPPR=83.3548;GTI=0;LEN=1;MEANALT=2;MQM=60;MQMR=60;NS=3;NUMALT=2;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=78;QR=1391;RO=37;RPL=2;RPP=7.35324;RPPR=83.3548;RPR=0;RUN=1;SAF=0;SAP=7.35324;SAR=2;SRF=0;SRP=83.3548;SRR=37;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|0:26:16,0,10:16:612:0,10:0,388:-27.4511,-32.2676,-82.4854,0,-50.6033,-47.593 0|0:28:17,2,9:17:637:2,9:78,336:-22.3796,-21.0823,-72.653,0,-45.7449,-49.449 0|0:14:4,0,10:4:142:0,10:0,377:-30.0684,-31.2726,-42.835,0,-11.9235,-8.91321 dDocent_Contig_10079 55 . T C 148.306 . AB=0.28;ABP=13.5202;AC=2;AF=0.333333;AN=6;AO=7;CIGAR=1X;DP=33;DPB=33;DPRA=1.5625;EPP=18.2106;EPPR=59.4686;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=1.73472e-18;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=279;QR=1031;RO=26;RPL=7;RPP=18.2106;RPPR=59.4686;RPR=0;RUN=1;SAF=7;SAP=18.2106;SAR=0;SRF=26;SRP=59.4686;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:14:11,3:11:442:3:119:-6.88097,0,-35.9208 0/1:11:7,4:7:270:4:160:-11.4725,0,-21.3515 0/0:8:8,0:8:319:0:0:0,-2.40824,-29.0769 dDocent_Contig_10080 130 . G T 444.03 . AB=0.30137;ABP=28.0269;AC=3;AF=0.5;AN=6;AO=22;CIGAR=1X;DP=73;DPB=73;DPRA=0;EPP=50.7827;EPPR=113.755;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=0.980392;PAO=0;PQA=0;PQR=0;PRO=0;QA=787;QR=1752;RO=51;RPL=0;RPP=50.7827;RPPR=113.755;RPR=22;RUN=1;SAF=0;SAP=50.7827;SAR=22;SRF=0;SRP=113.755;SRR=51;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:47:34,13:34:1153:13:463:-27.8587,0,-89.9184 0/1:3:2,1:2:68:1:36:-2.69518,0,-5.55433 0/1:23:15,8:15:531:8:288:-19.3437,0,-41.1987 dDocent_Contig_10081 17 . G A 45.2025 . AB=0.125;ABP=61.6401;AC=1;AF=0.166667;AN=6;AO=7;CIGAR=1X;DP=154;DPB=154;DPRA=3.77778;EPP=18.2106;EPPR=322.217;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=0.979592;PAO=0;PQA=0;PQR=0;PRO=0;QA=253;QR=5640;RO=147;RPL=0;RPP=18.2106;RPPR=322.217;RPR=7;RUN=1;SAF=7;SAP=18.2106;SAR=0;SRF=147;SRP=322.217;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:18:18,0:18:691:0:0:0,-5.41854,-62.5183 0/0:88:87,1:87:3305:1:26:0,-23.8908,-294.972 0/1:48:42,6:42:1644:6:227:-6.34415,0,-133.76 dDocent_Contig_10083 13 . A G 178.852 . AB=0.32;ABP=10.0459;AC=2;AF=0.333333;AN=6;AO=8;CIGAR=1X;DP=58;DPB=58;DPRA=0.378788;EPP=20.3821;EPPR=111.584;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=313;QR=1963;RO=50;RPL=0;RPP=20.3821;RPPR=111.584;RPR=8;RUN=1;SAF=8;SAP=20.3821;SAR=0;SRF=50;SRP=111.584;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:7:5,2:5:197:2:82:-5.67247,0,-15.9976 0/1:18:12,6:12:470:6:231:-15.7356,0,-37.2316 0/0:33:33,0:33:1296:0:0:0,-9.93399,-116.914 dDocent_Contig_10084 26 . G T 74.6906 . AB=0.103448;ABP=161.453;AC=1;AF=0.166667;AN=6;AO=13;CIGAR=1X;DP=190;DPB=190;DPRA=7.41667;EPP=31.2394;EPPR=387.361;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=525;QR=7043;RO=177;RPL=0;RPP=31.2394;RPPR=387.361;RPR=13;RUN=1;SAF=13;SAP=31.2394;SAR=0;SRF=177;SRP=387.361;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:116:104,12:104:4116:12:484:-8.99193,0,-335.5 0/0:12:12,0:12:477:0:0:0,-3.61236,-43.2792 0/0:62:61,1:61:2450:1:41:0,-14.5693,-216.549 dDocent_Contig_10085 202 . G A 34.2408 . AB=0.25;ABP=9.52472;AC=2;AF=0.333333;AN=6;AO=3;CIGAR=1X;DP=18;DPB=18;DPRA=1;EPP=9.52472;EPPR=35.5824;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=109;QR=540;RO=15;RPL=3;RPP=9.52472;RPPR=35.5824;RPR=0;RUN=1;SAF=0;SAP=9.52472;SAR=3;SRF=0;SRP=35.5824;SRR=15;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:2:1,1:1:37:1:37:-3.09577,0,-3.09577 0/1:10:8,2:8:286:2:72:-3.82634,0,-23.075 0/0:6:6,0:6:217:0:0:0,-1.80618,-19.8811 dDocent_Contig_10086 7 . G A 172.841 . AB=0.168831;ABP=76.3609;AC=3;AF=0.5;AN=6;AO=13;CIGAR=1X;DP=77;DPB=77;DPRA=0;EPP=31.2394;EPPR=139.813;GTI=0;LEN=1;MEANALT=1.33333;MQM=60;MQMR=59.1587;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=0.984127;PAO=0;PQA=0;PQR=0;PRO=0;QA=497;QR=2147;RO=63;RPL=0;RPP=31.2394;RPPR=139.813;RPR=13;RUN=1;SAF=13;SAP=31.2394;SAR=0;SRF=63;SRP=139.813;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:36:30,5:30:999:5:192:-6.95834,0,-79.5427 0/1:26:22,4:22:763:4:153:-6.31483,0,-61.1549 0/1:15:11,4:11:385:4:152:-9.53375,0,-27.5544 dDocent_Contig_10087 19 . G A 7878.07 . AB=0.74;ABP=28.0257;AC=4;AF=0.666667;AN=6;AO=233;CIGAR=1X;DP=252;DPB=252;DPRA=0;EPP=508.963;EPPR=42.0968;GTI=0;LEN=1;MEANALT=1.33333;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=0.914163;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=9161;QR=722;RO=18;RPL=0;RPP=508.963;RPPR=42.0968;RPR=233;RUN=1;SAF=233;SAP=508.963;SAR=0;SRF=18;SRP=42.0968;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:32:9,23:9:360:23:907:-72.2989,0,-23.1285 1/1:202:5,196:5:201:196:7700:-674.246,-42.1864,0 0/1:18:4,14:4:161:14:554:-44.7856,0,-9.45694 dDocent_Contig_10088 36 . G A 62.3727 . AB=0.272727;ABP=7.94546;AC=1;AF=0.166667;AN=6;AO=3;CIGAR=1X;DP=38;DPB=38;DPRA=0.814815;EPP=9.52472;EPPR=79.0118;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=122;QR=1378;RO=35;RPL=0;RPP=9.52472;RPPR=79.0118;RPR=3;RUN=1;SAF=3;SAP=9.52472;SAR=0;SRF=35;SRP=79.0118;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:20:20,0:20:796:0:0:0,-6.0206,-71.9597 0/1:11:8,3:8:302:3:122:-8.06116,0,-24.2177 0/0:7:7,0:7:280:0:0:0,-2.10721,-25.57 dDocent_Contig_10089 107 . N T 217.115 . AB=0;ABP=0;AC=2;AF=1;AN=2;AO=8;CIGAR=1X;DP=8;DPB=8;DPRA=0;EPP=20.3821;EPPR=0;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=0;NS=1;NUMALT=1;ODDS=10.1503;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=238;QR=0;RO=0;RPL=0;RPP=20.3821;RPPR=0;RPR=8;RUN=1;SAF=0;SAP=20.3821;SAR=8;SRF=0;SRP=0;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL ./.:.:.:.:.:.:.:. ./.:.:.:.:.:.:.:. 1/1:8:0,8:0:0:8:238:-21.7115,-2.40824,0 dDocent_Contig_10090 13 . C A 1735.46 . AB=0.59375;ABP=10.339;AC=3;AF=0.5;AN=6;AO=57;CIGAR=5M1X6M;DP=96;DPB=88.5;DPRA=0;EPP=126.784;EPPR=65.983;GTI=0;LEN=1;MEANALT=2.33333;MQM=60;MQMR=60;NS=3;NUMALT=2;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=2275;QR=1126;RO=29;RPL=0;RPP=126.784;RPPR=65.983;RPR=57;RUN=1;SAF=57;SAP=126.784;SAR=0;SRF=29;SRP=65.983;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|1:67:21,4,42:21:816:4,42:121,1676:-131.786,-128.433,-194.277,0,-57.4537,-54.4799 0|1:7:5,1,1:5:198:1,1:37,41:-1.89877,-0.396738,-16.3812,0,-13.2958,-16.0175 0|1:22:3,4,14:3:112:4,14:94,558:-45.1451,-38.8283,-46.7888,0,-2.02497,-4.99575 dDocent_Contig_10091 162 . A C 144.044 . AB=0.3;ABP=9.95901;AC=1;AF=0.166667;AN=6;AO=6;CIGAR=1X;DP=41;DPB=41;DPRA=1.90476;EPP=16.0391;EPPR=79.0118;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=243;QR=1388;RO=35;RPL=6;RPP=16.0391;RPPR=79.0118;RPR=0;RUN=1;SAF=0;SAP=16.0391;SAR=6;SRF=0;SRP=79.0118;SRR=35;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:20:20,0:20:791:0:0:0,-6.0206,-71.5057 0/0:1:1,0:1:35:0:0:0,-0.30103,-3.49863 0/1:20:14,6:14:562:6:243:-16.2276,0,-44.8983 dDocent_Contig_10093 135 . T A 406.73 . AB=0.404762;ABP=6.31921;AC=1;AF=0.166667;AN=6;AO=17;CIGAR=1X;DP=50;DPB=50;DPRA=10.5;EPP=39.9253;EPPR=74.6689;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=609;QR=1148;RO=33;RPL=0;RPP=39.9253;RPPR=74.6689;RPR=17;RUN=1;SAF=0;SAP=39.9253;SAR=17;SRF=0;SRP=74.6689;SRR=33;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:1:1,0:1:36:0:0:0,-0.30103,-3.59827 0/1:42:25,17:25:855:17:609:-42.4961,0,-64.6135 0/0:7:7,0:7:257:0:0:0,-2.10721,-23.484 dDocent_Contig_10094 176 . A G 131.494 . AB=0.149254;ABP=74.6041;AC=3;AF=0.5;AN=6;AO=10;CIGAR=1X;DP=67;DPB=67;DPRA=0;EPP=24.725;EPPR=126.784;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=398;QR=2270;RO=57;RPL=10;RPP=24.725;RPPR=126.784;RPR=0;RUN=1;SAF=0;SAP=24.725;SAR=10;SRF=0;SRP=126.784;SRR=57;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:32:29,3:29:1168:3:120:-1.55473,0,-95.7653 0/1:13:8,5:8:319:5:205:-14.9216,0,-25.163 0/1:22:20,2:20:783:2:73:-0.307413,0,-64.1563 dDocent_Contig_10096 16 . C G 119.49 . AB=0.3125;ABP=7.89611;AC=1;AF=0.166667;AN=6;AO=5;CIGAR=1X;DP=35;DPB=35;DPRA=1.68421;EPP=13.8677;EPPR=68.1545;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=8.67362e-19;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=199;QR=1207;RO=30;RPL=0;RPP=13.8677;RPPR=68.1545;RPR=5;RUN=1;SAF=5;SAP=13.8677;SAR=0;SRF=30;SRP=68.1545;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:16:11,5:11:434:5:199:-13.4719,0,-34.597 0/0:5:5,0:5:205:0:0:0,-1.50515,-18.835 0/0:14:14,0:14:568:0:0:0,-4.21442,-51.4617 dDocent_Contig_10097 16 . T A 106.951 . AB=0.666667;ABP=4.45795;AC=1;AF=0.166667;AN=6;AO=4;CIGAR=1X;DP=19;DPB=19;DPRA=0.923077;EPP=3.0103;EPPR=27.4756;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=0;PAIREDR=0.866667;PAO=0;PQA=0;PQR=0;PRO=0;QA=155;QR=596;RO=15;RPL=0;RPP=11.6962;RPPR=35.5824;RPR=4;RUN=1;SAF=2;SAP=3.0103;SAR=2;SRF=14;SRP=27.4756;SRR=1;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:7:7,0:7:281:0:0:0,-2.10721,-25.6611 0/1:6:2,4:2:78:4:155:-12.519,0,-5.59712 0/0:6:6,0:6:237:0:0:0,-1.80618,-21.7013 dDocent_Contig_10099 112 . A C 74.7478 . AB=0;ABP=0;AC=2;AF=0.333333;AN=6;AO=3;CIGAR=1X;DP=16;DPB=16;DPRA=0.461538;EPP=9.52472;EPPR=31.2394;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=0;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=75;QR=453;RO=13;RPL=0;RPP=9.52472;RPPR=31.2394;RPR=3;RUN=1;SAF=0;SAP=9.52472;SAR=3;SRF=0;SRP=31.2394;SRR=13;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 1/1:3:0,3:0:0:3:75:-6.99744,-0.90309,0 0/0:6:6,0:6:210:0:0:0,-1.80618,-19.2425 0/0:7:7,0:7:243:0:0:0,-2.10721,-22.2089 dDocent_Contig_10100 85 . A G 104.122 . AB=0.272727;ABP=12.8806;AC=2;AF=0.333333;AN=6;AO=6;CIGAR=1X;DP=26;DPB=26;DPRA=2.75;EPP=16.0391;EPPR=46.4397;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=204;QR=691;RO=20;RPL=6;RPP=16.0391;RPPR=46.4397;RPR=0;RUN=1;SAF=6;SAP=16.0391;SAR=0;SRF=20;SRP=46.4397;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:12:7,5:7:244:5:169:-11.9306,0,-18.6877 0/0:4:4,0:4:139:0:0:0,-1.20412,-12.8527 0/1:10:9,1:9:308:1:35:-0.488329,0,-25.042 dDocent_Contig_10101 14 . A G 461.636 . AB=0.0769231;ABP=43.4331;AC=1;AF=0.166667;AN=6;AO=2;CIGAR=2M1X3M1I2M;DP=75;DPB=80;DPRA=0;EPP=7.35324;EPPR=61.6401;GTI=0;LEN=1;MEANALT=4;MQM=54;MQMR=60;NS=3;NUMALT=4;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=78;QR=1036;RO=27;RPL=0;RPP=7.35324;RPPR=61.6401;RPR=2;RUN=1;SAF=2;SAP=7.35324;SAR=0;SRF=27;SRP=61.6401;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|0:26:10,0,2,9,4:10:389:0,2,9,4:0,78,300,147:-20.6545,-23.6648,-55.6474,-17.2662,-49.2524,-48.6503,0,-31.973,-25.5795,-29.2637,-11.6417,-43.6298,-37.2343,-19.9613,-42.4257 0|1:35:9,13,0,11,0:9:332:13,0,11,0:368,0,330,0:-23.7726,0,-23.2706,-26.4819,-27.184,-53.6568,-0.65063,-1.39407,-27.8426,-24.5312,-26.4819,-27.184,-53.6568,-27.8426,-53.6568 0|0:14:8,0,0,2,3:8:315:0,0,2,3:0,0,71,117:-7.22284,-9.63108,-35.5555,-9.63108,-35.5555,-35.5555,-3.85975,-29.7787,-29.7787,-29.1766,0,-25.9369,-25.9369,-20.1615,-25.0338 dDocent_Contig_10102 8 . A G 21975.7 . AB=0;ABP=0;AC=6;AF=1;AN=6;AO=733;CIGAR=1X;DP=749;DPB=749;DPRA=0;EPP=1594.7;EPPR=37.7539;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=0.0313779;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=25001;QR=581;RO=16;RPL=0;RPP=1594.7;RPPR=37.7539;RPR=733;RUN=1;SAF=733;SAP=1594.7;SAR=0;SRF=16;SRP=37.7539;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 1/1:285:0,285:0:0:285:9661:-869.348,-85.7936,0 1/1:279:9,270:9:328:270:9201:-798.191,-54.1206,0 1/1:185:7,178:7:253:178:6139:-529.425,-32.5717,0 dDocent_Contig_10103 10 . T G 44.4318 . AB=0.166667;ABP=26.1727;AC=2;AF=0.333333;AN=6;AO=4;CIGAR=1X;DP=33;DPB=33;DPRA=1.33333;EPP=11.6962;EPPR=65.983;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=160;QR=1098;RO=29;RPL=0;RPP=11.6962;RPPR=65.983;RPR=4;RUN=1;SAF=4;SAP=11.6962;SAR=0;SRF=29;SRP=65.983;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:10:8,2:8:319:2:81:-4.67543,0,-26.0667 0/0:9:9,0:9:318:0:0:0,-2.70927,-28.9417 0/1:14:12,2:12:461:2:79:-3.28282,0,-37.6192 dDocent_Contig_10108 192 . G T 190.855 . AB=0.380952;ABP=5.59539;AC=2;AF=0.333333;AN=6;AO=8;CIGAR=1X;DP=40;DPB=40;DPRA=0.552632;EPP=20.3821;EPPR=72.4974;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=313;QR=1275;RO=32;RPL=8;RPP=20.3821;RPPR=72.4974;RPR=0;RUN=1;SAF=0;SAP=20.3821;SAR=8;SRF=0;SRP=72.4974;SRR=32;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:19:19,0:19:752:0:0:0,-5.71957,-67.9986 0/1:8:2,6:2:79:6:234:-19.0206,0,-5.089 0/1:13:11,2:11:444:2:79:-3.58385,0,-36.4022 dDocent_Contig_10109 9 . C A 1435.55 . AB=0.112676;ABP=95.5273;AC=0;AF=0;AN=6;AO=8;CIGAR=1X1M1X;DP=97;DPB=97;DPRA=0;EPP=20.3821;EPPR=68.1545;GTI=0;LEN=1;MEANALT=3;MQM=60;MQMR=60;NS=3;NUMALT=3;ODDS=1.38778e-17;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=295;QR=1131;RO=30;RPL=0;RPP=20.3821;RPPR=68.1545;RPR=8;RUN=1;SAF=8;SAP=20.3821;SAR=0;SRF=30;SRP=68.1545;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|0:36:11,1,3,21:11:421:1,3,21:40,97,822:-64.3075,-64.3231,-98.5701,-59.8082,-91.0578,-93.4501,0,-31.2805,-26.7708,-28.256 0|0:26:7,0,3,15:7:275:0,3,15:0,120,599:-47.232,-49.3392,-71.9587,-39.4528,-62.0727,-61.1696,0,-22.6355,-12.7444,-18.1201 0|0:35:12,7,3,13:12:435:7,3,13:255,99,501:-37.5384,-20.3312,-53.7228,-33.1599,-47.8376,-67.7551,0,-14.6833,-27.5161,-31.5953 dDocent_Contig_10110 45 . C T 41.7739 . AB=0.176471;ABP=18.4661;AC=1;AF=0.166667;AN=6;AO=3;CIGAR=1X;DP=34;DPB=34;DPRA=2;EPP=9.52472;EPPR=70.3259;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=1.73472e-18;PAIRED=1;PAIREDR=0.935484;PAO=0;PQA=0;PQR=0;PRO=0;QA=116;QR=1158;RO=31;RPL=0;RPP=9.52472;RPPR=70.3259;RPR=3;RUN=1;SAF=3;SAP=9.52472;SAR=0;SRF=31;SRP=70.3259;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:17:14,3:14:528:3:116:-5.70019,0,-42.7429 0/0:12:12,0:12:445:0:0:0,-3.61236,-40.3911 0/0:5:5,0:5:185:0:0:0,-1.50515,-17.01 dDocent_Contig_10112 7 . G A 281.572 . AB=0.30303;ABP=14.1309;AC=2;AF=0.333333;AN=6;AO=10;CIGAR=1X1M1X1M1X2M1X1M;DP=44;DPB=44;DPRA=0;EPP=24.725;EPPR=39.9253;GTI=0;LEN=1;MEANALT=3.5;MQM=45;MQMR=60;NS=3;NUMALT=4;ODDS=0;PAIRED=0.4;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=367;QR=656;RO=17;RPL=0;RPP=24.725;RPPR=39.9253;RPR=10;RUN=1;SAF=10;SAP=24.725;SAR=0;SRF=17;SRP=39.9253;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|1:9:6,2,0,1,0:6:233:2,0,1,0:70,0,39,0:-3.30353,0,-18.5417,-5.10971,-19.1437,-24.2848,-1.88058,-15.9376,-21.0768,-20.7758,-5.10971,-19.1437,-24.2848,-21.0768,-24.2848 0|0:11:5,0,4,0,2:5:196:0,4,0,2:0,131,0,76:-8.9617,-10.4669,-26.6072,0,-16.127,-14.9228,-10.4669,-26.6072,-16.127,-26.6072,-4.21619,-20.3715,-9.89787,-20.3715,-19.7695 0|1:24:6,8,3,5,0:6:227:8,3,5,0:297,112,201,0:-21.4045,0,-16.1949,-14.0417,-9.43668,-31.7468,-6.63627,-2.03164,-16.0779,-23.7428,-23.2106,-18.6031,-32.6499,-25.248,-41.8187 dDocent_Contig_10113 155 . T C 262.111 . AB=0.282051;ABP=19.1015;AC=1;AF=0.166667;AN=6;AO=15;CIGAR=1X;DP=98;DPB=98;DPRA=7.66667;EPP=35.5824;EPPR=183.243;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=592;QR=3234;RO=83;RPL=0;RPP=35.5824;RPPR=183.243;RPR=15;RUN=1;SAF=0;SAP=35.5824;SAR=15;SRF=0;SRP=183.243;SRR=83;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:53:49,4:49:1913:4:154:0,-1.72362,-158.146 0/0:6:6,0:6:235:0:0:0,-1.80618,-21.5213 0/1:39:28,11:28:1086:11:438:-28.035,0,-86.2808 dDocent_Contig_10114 41 . G A 85.3373 . AB=0.208333;ABP=20.744;AC=1;AF=0.166667;AN=6;AO=5;CIGAR=1X;DP=78;DPB=78;DPRA=0.888889;EPP=13.8677;EPPR=161.528;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=188;QR=2787;RO=73;RPL=0;RPP=13.8677;RPPR=161.528;RPR=5;RUN=1;SAF=5;SAP=13.8677;SAR=0;SRF=73;SRP=161.528;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:24:19,5:19:717:5:188:-10.0566,0,-57.6338 0/0:35:35,0:35:1338:0:0:0,-10.536,-120.701 0/0:19:19,0:19:732:0:0:0,-5.71957,-66.2081 dDocent_Contig_10115 18 . C T 153.97 . AB=0.428571;ABP=3.63072;AC=1;AF=0.25;AN=4;AO=6;CIGAR=1X;DP=19;DPB=19;DPRA=2.8;EPP=16.0391;EPPR=31.2394;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=2;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=236;QR=521;RO=13;RPL=0;RPP=16.0391;RPPR=31.2394;RPR=6;RUN=1;SAF=6;SAP=16.0391;SAR=0;SRF=13;SRP=31.2394;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:5:5,0:5:198:0:0:0,-1.50515,-18.1963 ./.:.:.:.:.:.:.:. 0/1:14:8,6:8:323:6:236:-17.3969,0,-25.2237 dDocent_Contig_10116 46 . C T 520.387 . AB=0.363636;ABP=11.8936;AC=3;AF=0.5;AN=6;AO=20;CIGAR=1X;DP=55;DPB=55;DPRA=0;EPP=46.4397;EPPR=79.0118;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=811;QR=1367;RO=35;RPL=0;RPP=46.4397;RPPR=79.0118;RPR=20;RUN=1;SAF=20;SAP=46.4397;SAR=0;SRF=35;SRP=79.0118;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:31:20,11:20:786:11:444:-30.9833,0,-61.7153 0/1:10:6,4:6:221:4:164:-12.1396,0,-17.2323 0/1:14:9,5:9:360:5:203:-14.4386,0,-28.5489 dDocent_Contig_10117 7 . G A 2015.91 . AB=0.788235;ABP=64.348;AC=3;AF=0.5;AN=6;AO=67;CIGAR=1X;DP=85;DPB=85;DPRA=0;EPP=148.499;EPPR=42.0968;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=2575;QR=586;RO=18;RPL=0;RPP=148.499;RPPR=42.0968;RPR=67;RUN=1;SAF=67;SAP=148.499;SAR=0;SRF=18;SRP=42.0968;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:47:8,39:8:261:39:1503:-121.394,0,-9.65267 0/1:10:3,7:3:91:7:259:-20.6529,0,-5.47853 0/1:28:7,21:7:234:21:813:-65.0666,0,-12.9548 dDocent_Contig_10119 10 . C T 384.073 . AB=0.265625;ABP=33.5466;AC=3;AF=0.5;AN=6;AO=17;CIGAR=3M1X;DP=64;DPB=64;DPRA=0;EPP=39.9253;EPPR=89.8692;GTI=0;LEN=1;MEANALT=2.66667;MQM=60;MQMR=48.075;NS=3;NUMALT=3;ODDS=0;PAIRED=0;PAIREDR=0.95;PAO=0;PQA=0;PQR=0;PRO=0;QA=674;QR=1382;RO=40;RPL=0;RPP=39.9253;RPPR=89.8692;RPR=17;RUN=1;SAF=17;SAP=39.9253;SAR=0;SRF=40;SRP=89.8692;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|1:39:24,2,1,11:24:812:2,1,11:58,11,440:-29.1642,-31.7804,-90.2104,-35.7169,-90.1295,-94.4437,0,-54.5361,-58.4711,-55.842 0|1:10:6,0,2,2:6:214:0,2,2:0,34,79:-4.82192,-6.6281,-24.1239,-4.83131,-22.2451,-21.643,0,-17.6045,-15.7346,-17.0024 0|1:15:10,0,0,4:10:356:0,0,4:0,0,155:-9.94381,-12.9541,-36.5151,-12.9541,-36.5151,-36.5151,0,-23.7537,-23.7537,-22.5496 dDocent_Contig_10120 20 . C T 1267 . AB=0.228571;ABP=47.8047;AC=1;AF=0.166667;AN=6;AO=16;CIGAR=1X2M1X;DP=97;DPB=97;DPRA=0;EPP=37.7539;EPPR=87.6977;GTI=0;LEN=1;MEANALT=2;MQM=60;MQMR=60;NS=3;NUMALT=2;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=606;QR=1550;RO=39;RPL=0;RPP=37.7539;RPPR=87.6977;RPR=16;RUN=1;SAF=16;SAP=37.7539;SAR=0;SRF=39;SRP=87.6977;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|0:34:14,5,15:14:558:5,15:183,608:-45.9515,-35.2246,-79.6679,0,-31.033,-41.4601 0|0:27:16,0,11:16:642:0,11:0,449:-32.6381,-37.4545,-90.3488,0,-53.2991,-49.9878 1|0:36:9,11,16:9:350:11,16:423,614:-53.6331,-21.6173,-47.0637,-5.96456,0,-29.9058 dDocent_Contig_10122 14 . T C 382.385 . AB=0.0888889;ABP=69.0713;AC=3;AF=0.5;AN=6;AO=4;CIGAR=4M1X3M;DP=219;DPB=218.5;DPRA=0;EPP=11.6962;EPPR=385.189;GTI=0;LEN=1;MEANALT=4;MQM=60;MQMR=60;NS=3;NUMALT=3;ODDS=0;PAIRED=0;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=154;QR=6794;RO=176;RPL=0;RPP=11.6962;RPPR=385.189;RPR=4;RUN=1;SAF=4;SAP=11.6962;SAR=0;SRF=176;SRP=385.189;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|1:126:103,0,19,0:103:4018:0,19,0:0,749,0:-30.6232,-61.6293,-391.898,0,-330.28,-324.56,-61.6293,-391.898,-330.28,-391.898 0|1:45:29,4,6,4:29:1116:4,6,4:152,241,154:-11.1351,-7.55015,-97.9564,0,-79.2993,-89.8121,-7.22447,-86.5182,-78.9756,-97.6328 0|1:48:44,0,4,0:44:1660:0,4,0:0,160,0:-0.334573,-13.5799,-149.589,0,-136.407,-135.203,-13.5799,-149.589,-136.407,-149.589 dDocent_Contig_10123 108 . A G 60.4957 . AB=0.5;ABP=3.0103;AC=3;AF=0.5;AN=6;AO=18;CIGAR=1X;DP=36;DPB=36;DPRA=0;EPP=42.0968;EPPR=42.0968;GTI=0;LEN=1;MEANALT=1;MQM=12.5556;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=0;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=604;QR=607;RO=18;RPL=0;RPP=42.0968;RPPR=42.0968;RPR=18;RUN=1;SAF=0;SAP=42.0968;SAR=18;SRF=0;SRP=42.0968;SRR=18;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:17:11,6:11:356:6:208:-2.33177,0,-27.2349 0/1:9:1,8:1:36:8:265:-6.02654,0,-0.889005 0/1:10:6,4:6:215:4:131:-1.41651,0,-16.6889 dDocent_Contig_10124 10 . A T 197.755 . AB=0.291667;ABP=21.1059;AC=2;AF=0.333333;AN=6;AO=14;CIGAR=1X1M1X;DP=48;DPB=48;DPRA=0;EPP=33.4109;EPPR=70.3259;GTI=0;LEN=1;MEANALT=1.66667;MQM=39.2857;MQMR=60;NS=3;NUMALT=2;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=530;QR=1194;RO=31;RPL=0;RPP=33.4109;RPPR=70.3259;RPR=14;RUN=1;SAF=14;SAP=33.4109;SAR=0;SRF=31;SRP=70.3259;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|0:19:15,2,2:15:590:2,2:74,80:-2.09045,-0.605948,-48.5286,0,-42.5399,-47.9507 0|1:20:15,4,1:15:564:4,1:149,38:-2.23616,0,-44.9871,-3.60404,-43.0745,-49.6175 0|1:9:1,8,0:1:40:8,0:307,0:-20.051,0,-1.28641,-20.352,-3.69465,-23.6569 dDocent_Contig_10125 18 . A G 656.918 . AB=0.0833333;ABP=39.2015;AC=1;AF=0.166667;AN=6;AO=2;CIGAR=1M1X1M2I13M;DP=73;DPB=86.25;DPRA=0;EPP=7.35324;EPPR=61.6401;GTI=0;LEN=1;MEANALT=3;MQM=60;MQMR=60;NS=3;NUMALT=3;ODDS=0;PAIRED=0;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=72;QR=1062;RO=27;RPL=0;RPP=7.35324;RPPR=61.6401;RPR=2;RUN=1;SAF=2;SAP=7.35324;SAR=0;SRF=27;SRP=61.6401;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|0:20:7,0,3,10:7:277:0,3,10:0,33,389:-30.094,-32.2012,-55.0261,-30.9608,-53.7614,-52.8583,0,-23.0171,-21.7999,-20.0068 0|1:24:15,2,6,1:15:589:2,6,1:72,54,40:-1.4133,0,-48.034,-4.55488,-47.1454,-51.209,-2.60449,-45.3364,-49.7194,-50.9142 0|0:29:5,0,11,13:5:196:0,11,13:0,99,493:-39.0846,-40.5898,-56.7351,-37.8367,-53.9584,-50.647,0,-16.2209,-13.549,-12.3075 dDocent_Contig_10128 19 . G A 397.542 . AB=0.264706;ABP=35.7101;AC=3;AF=0.5;AN=6;AO=18;CIGAR=1X;DP=68;DPB=68;DPRA=0;EPP=42.0968;EPPR=111.584;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=718;QR=2024;RO=50;RPL=0;RPP=42.0968;RPPR=111.584;RPR=18;RUN=1;SAF=18;SAP=42.0968;SAR=0;SRF=50;SRP=111.584;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:29:21,8:21:845:8:326:-20.98,0,-67.6337 0/1:10:8,2:8:325:2:82:-4.76938,0,-26.6093 0/1:29:21,8:21:854:8:310:-19.5274,0,-68.44 dDocent_Contig_10129 11 . G A 153.867 . AB=0.222222;ABP=9.04217;AC=0;AF=0;AN=6;AO=2;CIGAR=1X1M10D3M2X3M1X;DP=32;DPB=31.0476;DPRA=0;EPP=7.35324;EPPR=50.7827;GTI=0;LEN=1;MEANALT=2;MQM=60;MQMR=60;NS=3;NUMALT=2;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=80;QR=868;RO=22;RPL=0;RPP=7.35324;RPPR=50.7827;RPR=2;RUN=1;SAF=2;SAP=7.35324;SAR=0;SRF=22;SRP=50.7827;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|0:8:7,0,1:7:278:0,1:0,40:-1.58744,-3.69465,-26.5793,0,-23.2839,-22.9829 0|0:15:12,0,3:12:472:0,3:0,119:-6.57973,-10.1921,-49.0155,0,-39.219,-38.3159 0|0:9:3,2,4:3:118:2,4:80,160:-12.277,-6.58995,-15.6917,0,-3.1099,-8.49859 dDocent_Contig_10131 24 . C T 628.471 . AB=0.384615;ABP=10.5269;AC=3;AF=0.5;AN=6;AO=25;CIGAR=1X;DP=65;DPB=65;DPRA=0;EPP=57.2971;EPPR=89.8692;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=965;QR=1558;RO=40;RPL=0;RPP=57.2971;RPPR=89.8692;RPR=25;RUN=1;SAF=25;SAP=57.2971;SAR=0;SRF=40;SRP=89.8692;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:23:17,6:17:665:6:236:-14.689,0,-53.2603 0/1:11:7,4:7:271:4:156:-11.1054,0,-21.4424 0/1:31:16,15:16:622:15:573:-42.5756,0,-46.9827 dDocent_Contig_10132 26 . A T 119.23 . AB=0.416667;ABP=3.73412;AC=2;AF=0.333333;AN=6;AO=5;CIGAR=1X;DP=18;DPB=18;DPRA=1;EPP=13.8677;EPPR=31.2394;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=1.73472e-18;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=203;QR=518;RO=13;RPL=0;RPP=13.8677;RPPR=31.2394;RPR=5;RUN=1;SAF=5;SAP=13.8677;SAR=0;SRF=13;SRP=31.2394;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:6:6,0:6:239:0:0:0,-1.80618,-21.8846 0/1:4:2,2:2:75:2:81:-6.48161,0,-5.91468 0/1:8:5,3:5:204:3:122:-8.96425,0,-16.3358 dDocent_Contig_10133 9 . C G 58.8671 . AB=0.116279;ABP=112.998;AC=2;AF=0.333333;AN=6;AO=15;CIGAR=2X;DP=142;DPB=142;DPRA=0;EPP=35.5824;EPPR=274.444;GTI=0;LEN=1;MEANALT=1.33333;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=0.968;PAO=0;PQA=0;PQR=0;PRO=0;QA=513;QR=4627;RO=125;RPL=0;RPP=35.5824;RPPR=274.444;RPR=15;RUN=1;SAF=15;SAP=35.5824;SAR=0;SRF=125;SRP=274.444;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|1:39:33,6:33:1215:6:209:-7.40712,0,-97.8959 0|0:56:51,5:51:1907:5:151:0,-2.97244,-157.983 0|1:47:41,4:41:1505:4:153:-0.231295,0,-121.81 dDocent_Contig_10134 12 . G A 6632.74 . AB=0.832536;ABP=203.752;AC=4;AF=0.666667;AN=6;AO=209;CIGAR=1X;DP=248;DPB=248;DPRA=0;EPP=456.848;EPPR=87.6977;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=8234;QR=1478;RO=39;RPL=0;RPP=456.848;RPPR=87.6977;RPR=209;RUN=1;SAF=209;SAP=456.848;SAR=0;SRF=39;SRP=87.6977;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:138:15,123:15:579:123:4832:-393.269,0,-10.8996 1/1:39:4,35:4:127:35:1373:-112.094,-0.00384382,0 0/1:71:20,51:20:772:51:2029:-161.432,0,-48.4205 dDocent_Contig_10135 68 . T A 131.396 . AB=0.428571;ABP=3.63072;AC=1;AF=0.166667;AN=6;AO=6;CIGAR=1X;DP=26;DPB=26;DPRA=2.33333;EPP=16.0391;EPPR=46.4397;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=206;QR=686;RO=20;RPL=6;RPP=16.0391;RPPR=46.4397;RPR=0;RUN=1;SAF=6;SAP=16.0391;SAR=0;SRF=20;SRP=46.4397;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:14:8,6:8:278:6:206:-14.6623,0,-21.1435 0/0:9:9,0:9:303:0:0:0,-2.70927,-27.597 0/0:3:3,0:3:105:0:0:0,-0.90309,-9.79616 dDocent_Contig_10137 27 . T C 149.508 . AB=0.13;ABP=121.92;AC=2;AF=0.333333;AN=6;AO=16;CIGAR=1X;DP=149;DPB=149;DPRA=0;EPP=37.7539;EPPR=291.816;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=6.93889e-18;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=654;QR=5312;RO=133;RPL=0;RPP=37.7539;RPPR=291.816;RPR=16;RUN=1;SAF=16;SAP=37.7539;SAR=0;SRF=133;SRP=291.816;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:78:71,7:71:2829:7:286:-2.63448,0,-231.244 0/1:22:16,6:16:642:6:245:-15.8068,0,-51.4912 0/0:49:46,3:46:1841:3:123:0,-3.28568,-154.438 dDocent_Contig_10138 7 . G C 694.818 . AB=0.233333;ABP=95.6598;AC=3;AF=0.5;AN=6;AO=35;CIGAR=1X;DP=150;DPB=150;DPRA=0;EPP=79.0118;EPPR=244.044;GTI=0;LEN=1;MEANALT=2.33333;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=0.885714;PAIREDR=0.990991;PAO=0;PQA=0;PQR=0;PRO=0;QA=1315;QR=3519;RO=111;RPL=0;RPP=79.0118;RPPR=244.044;RPR=35;RUN=1;SAF=35;SAP=79.0118;SAR=0;SRF=111;SRP=244.044;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:60:50,8:50:1566:8:306:-10.2763,0,-123.601 0/1:31:23,7:23:718:7:254:-14.0357,0,-55.7516 0/1:59:38,20:38:1235:20:755:-50.6928,0,-93.8377 dDocent_Contig_10139 28 . G A 37.9272 . AB=0.128205;ABP=49.8362;AC=2;AF=0.333333;AN=6;AO=5;CIGAR=1X;DP=68;DPB=68;DPRA=0.672414;EPP=13.8677;EPPR=139.813;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=204;QR=2503;RO=63;RPL=0;RPP=13.8677;RPPR=139.813;RPR=5;RUN=1;SAF=5;SAP=13.8677;SAR=0;SRF=63;SRP=139.813;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:29:29,0:29:1155:0:0:0,-8.72987,-104.227 0/1:7:6,1:6:240:1:40:-1.88847,0,-19.8682 0/1:32:28,4:28:1108:4:164:-5.51694,0,-90.3626 dDocent_Contig_10141 110 . A T 260.027 . AB=0.341463;ABP=11.961;AC=3;AF=0.5;AN=6;AO=14;CIGAR=1X;DP=41;DPB=41;DPRA=0;EPP=33.4109;EPPR=32.0437;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=54.2593;NS=3;NUMALT=1;ODDS=3.46945e-18;PAIRED=1;PAIREDR=0.851852;PAO=0;PQA=0;PQR=0;PRO=0;QA=476;QR=932;RO=27;RPL=0;RPP=33.4109;RPPR=61.6401;RPR=14;RUN=1;SAF=0;SAP=33.4109;SAR=14;SRF=4;SRP=32.0437;SRR=23;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:30:20,10:20:686:10:347:-22.5344,0,-49.0866 0/1:2:1,1:1:35:1:34:-2.79685,0,-2.89657 0/1:9:6,3:6:211:3:95:-6.15471,0,-14.8798 dDocent_Contig_10143 39 . G T 49.8727 . AB=0.666667;ABP=3.73412;AC=1;AF=0.166667;AN=6;AO=3;CIGAR=1X;DP=28;DPB=28;DPRA=1.05556;EPP=9.52472;EPPR=57.2971;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=122;QR=966;RO=25;RPL=0;RPP=9.52472;RPPR=57.2971;RPR=3;RUN=1;SAF=3;SAP=9.52472;SAR=0;SRF=25;SRP=57.2971;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:16:15,1:15:593:1:41:0,-0.721913,-49.6084 0/1:3:1,2:1:36:2:81:-6.78264,0,-2.69518 0/0:9:9,0:9:337:0:0:0,-2.70927,-30.6698 dDocent_Contig_10144 8 . A G 40.0423 . AB=0.333333;ABP=10.2485;AC=3;AF=0.5;AN=6;AO=10;CIGAR=1X;DP=30;DPB=30;DPRA=0;EPP=24.725;EPPR=46.4397;GTI=0;LEN=1;MEANALT=1;MQM=18.4;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=0;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=369;QR=671;RO=20;RPL=0;RPP=24.725;RPPR=46.4397;RPR=10;RUN=1;SAF=10;SAP=24.725;SAR=0;SRF=20;SRP=46.4397;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:4:1,3:1:34:3:113:-3.26698,0,-2.19479 0/1:13:10,3:10:335:3:107:-0.552205,0,-26.5521 0/1:13:9,4:9:302:4:149:-4.16489,0,-23.5875 dDocent_Contig_10146 35 . C T 68.6325 . AB=0.375;ABP=4.09604;AC=1;AF=0.166667;AN=6;AO=3;CIGAR=1X;DP=97;DPB=97;DPRA=0.179775;EPP=9.52472;EPPR=207.129;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=119;QR=3722;RO=94;RPL=0;RPP=9.52472;RPPR=207.129;RPR=3;RUN=1;SAF=3;SAP=9.52472;SAR=0;SRF=94;SRP=207.129;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:50:50,0:50:1970:0:0:0,-15.0515,-177.488 0/1:8:5,3:5:198:3:119:-8.68715,0,-15.7883 0/0:39:39,0:39:1554:0:0:0,-11.7402,-140.099 dDocent_Contig_10147 7 . G A 113.924 . AB=0.145161;ABP=70.8163;AC=1;AF=0.166667;AN=6;AO=9;CIGAR=1X;DP=137;DPB=137;DPRA=1.65333;EPP=22.5536;EPPR=274.444;GTI=0;LEN=1;MEANALT=2;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=349;QR=3914;RO=125;RPL=0;RPP=22.5536;RPPR=274.444;RPR=9;RUN=1;SAF=9;SAP=22.5536;SAR=0;SRF=125;SRP=274.444;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:56:54,0:54:1732:0:0:0,-16.2556,-155.998 0/0:19:19,0:19:641:0:0:0,-5.71957,-57.9903 0/1:62:52,9:52:1541:9:349:-13.2163,0,-120.385 dDocent_Contig_10148 48 . T C 38.6345 . AB=0.133333;ABP=38.0434;AC=1;AF=0.166667;AN=6;AO=4;CIGAR=1X;DP=62;DPB=62;DPRA=1.875;EPP=11.6962;EPPR=128.956;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=156;QR=2197;RO=58;RPL=0;RPP=11.6962;RPPR=128.956;RPR=4;RUN=1;SAF=4;SAP=11.6962;SAR=0;SRF=58;SRP=128.956;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:30:26,4:26:989:4:156:-5.38622,0,-80.286 0/0:5:5,0:5:172:0:0:0,-1.50515,-15.8152 0/0:27:27,0:27:1036:0:0:0,-8.12781,-93.545 dDocent_Contig_10149 33 . G A 40.924 . AB=0.5;ABP=3.0103;AC=1;AF=0.166667;AN=6;AO=2;CIGAR=1X;DP=21;DPB=21;DPRA=0.470588;EPP=7.35324;EPPR=44.2683;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=75;QR=751;RO=19;RPL=0;RPP=7.35324;RPPR=44.2683;RPR=2;RUN=1;SAF=2;SAP=7.35324;SAR=0;SRF=19;SRP=44.2683;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:12:12,0:12:464:0:0:0,-3.61236,-42.0998 0/1:4:2,2:2:82:2:75:-5.91622,0,-6.57556 0/0:5:5,0:5:205:0:0:0,-1.50515,-18.835 dDocent_Contig_10151 87 . A G 179.694 . AB=0.4;ABP=4.74748;AC=1;AF=0.166667;AN=6;AO=10;CIGAR=1X;DP=47;DPB=47;DPRA=5.375;EPP=24.725;EPPR=83.3548;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=3.46945e-18;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=355;QR=1290;RO=37;RPL=10;RPP=24.725;RPPR=83.3548;RPR=0;RUN=1;SAF=10;SAP=24.725;SAR=0;SRF=37;SRP=83.3548;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:23:21,2:21:754:2:72:0,-0.0869673,-61.3497 0/0:4:4,0:4:139:0:0:0,-1.20412,-12.8524 0/1:20:12,8:12:397:8:283:-19.792,0,-30.0246 dDocent_Contig_10152 17 . T C 396.918 . AB=0.340426;ABP=13.4056;AC=3;AF=0.5;AN=6;AO=16;CIGAR=1X;DP=47;DPB=47;DPRA=0;EPP=37.7539;EPPR=70.3259;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=647;QR=1256;RO=31;RPL=0;RPP=37.7539;RPPR=70.3259;RPR=16;RUN=1;SAF=16;SAP=37.7539;SAR=0;SRF=31;SRP=70.3259;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:25:15,10:15:608:10:408:-29.5546,0,-47.5323 0/1:6:3,3:3:123:3:119:-9.28883,0,-9.65861 0/1:16:13,3:13:525:3:120:-6.37121,0,-42.7808 dDocent_Contig_10153 7 . G A 64.9275 . AB=0.375;ABP=4.09604;AC=1;AF=0.166667;AN=6;AO=3;CIGAR=1X;DP=30;DPB=30;DPRA=0.727273;EPP=9.52472;EPPR=59.4686;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=115;QR=833;RO=26;RPL=0;RPP=9.52472;RPPR=59.4686;RPR=3;RUN=1;SAF=3;SAP=9.52472;SAR=0;SRF=26;SRP=59.4686;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:9:8,0:8:247:0:0:0,-2.40824,-22.396 0/1:8:5,3:5:162:3:115:-8.31665,0,-12.485 0/0:13:13,0:13:424:0:0:0,-3.91339,-38.4617 dDocent_Contig_10155 20 . G A 466.637 . AB=0.253012;ABP=46.9892;AC=3;AF=0.5;AN=6;AO=21;CIGAR=1X;DP=83;DPB=83;DPRA=0;EPP=48.6112;EPPR=137.642;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=845;QR=2459;RO=62;RPL=0;RPP=48.6112;RPPR=137.642;RPR=21;RUN=1;SAF=21;SAP=48.6112;SAR=0;SRF=62;SRP=137.642;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:26:20,6:20:778:6:243:-14.4212,0,-62.4993 0/1:31:27,4:27:1074:4:164:-5.81797,0,-87.6132 0/1:26:15,11:15:607:11:438:-31.9474,0,-47.1404 dDocent_Contig_10156 65 . C A 13289.3 . AB=0;ABP=0;AC=0;AF=0;AN=6;AO=21;CIGAR=1M2X;DP=883;DPB=883;DPRA=0;EPP=48.6112;EPPR=76.8404;GTI=0;LEN=1;MEANALT=9;MQM=12;MQMR=53.2941;NS=3;NUMALT=2;ODDS=0;PAIRED=0;PAIREDR=0.911765;PAO=0;PQA=0;PQR=0;PRO=0;QA=756;QR=1121;RO=34;RPL=0;RPP=48.6112;RPPR=76.8404;RPR=21;RUN=1;SAF=0;SAP=48.6112;SAR=21;SRF=0;SRP=76.8404;SRR=34;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|0:230:15,6,189:15:483:6,189:221,6691:-320.386,-320.237,-357.379,-17.9009,-52.2468,0 0|0:410:14,2,364:14:463:2,364:74,12490:-613.647,-616.306,-651.834,-73.4127,-108.025,0 0|0:243:5,13,209:5:175:13,209:461,7361:-394.424,-385.847,-393.475,-51.3601,-52.8778,0 dDocent_Contig_10157 9 . A G 105.58 . AB=0.666667;ABP=4.45795;AC=1;AF=0.166667;AN=6;AO=4;CIGAR=1X;DP=43;DPB=43;DPRA=0.324324;EPP=11.6962;EPPR=85.5263;GTI=0;LEN=1;MEANALT=1;MQM=53;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=0;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=154;QR=1294;RO=38;RPL=0;RPP=11.6962;RPPR=85.5263;RPR=4;RUN=1;SAF=4;SAP=11.6962;SAR=0;SRF=38;SRP=85.5263;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:22:21,0:21:706:0:0:0,-6.32163,-63.719 0/1:6:2,4:2:77:4:154:-12.3818,0,-5.50296 0/0:15:15,0:15:511:0:0:0,-4.51545,-46.305 dDocent_Contig_10158 84 . A T 152.933 . AB=0.25;ABP=20.3821;AC=1;AF=0.166667;AN=6;AO=8;CIGAR=1X;DP=74;DPB=74;DPRA=1.52381;EPP=20.3821;EPPR=146.327;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=290;QR=2279;RO=66;RPL=8;RPP=20.3821;RPPR=146.327;RPR=0;RUN=1;SAF=8;SAP=20.3821;SAR=0;SRF=66;SRP=146.327;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:32:24,8:24:845:8:290:-16.8161,0,-66.7366 0/0:8:8,0:8:282:0:0:0,-2.40824,-25.7215 0/0:34:34,0:34:1152:0:0:0,-10.235,-103.976 dDocent_Contig_10159 116 . G A 1598.53 . AB=0.524272;ABP=3.53736;AC=4;AF=0.666667;AN=6;AO=61;CIGAR=1X;DP=110;DPB=110;DPRA=0;EPP=135.47;EPPR=109.412;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=2149;QR=1704;RO=49;RPL=0;RPP=135.47;RPPR=109.412;RPR=61;RUN=1;SAF=0;SAP=135.47;SAR=61;SRF=0;SRP=109.412;SRR=49;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:71:25,46:25:869:46:1621:-124.806,0,-57.1547 1/1:7:0,7:0:0:7:244:-22.2995,-2.10721,0 0/1:32:24,8:24:835:8:284:-16.2707,0,-65.8365 dDocent_Contig_10160 7 . G A 4739.99 . AB=0.199681;ABP=983.822;AC=3;AF=0.5;AN=6;AO=250;CIGAR=1X;DP=1252;DPB=1252;DPRA=0;EPP=545.878;EPPR=2032.06;GTI=0;LEN=1;MEANALT=2.33333;MQM=58.88;MQMR=59.847;NS=3;NUMALT=1;ODDS=5.55112e-17;PAIRED=0.944;PAIREDR=0.925051;PAO=0;PQA=0;PQR=0;PRO=0;QA=9548;QR=32017;RO=974;RPL=0;RPP=545.878;RPPR=2118.02;RPR=250;RUN=1;SAF=250;SAP=545.878;SAR=0;SRF=964;SRP=2032.06;SRR=10;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:317:212,95:212:6707:95:3626:-229.892,0,-511.06 0/1:575:491,76:491:16711:76:2894:-86.9636,0,-1332.53 0/1:360:271,79:271:8599:79:3028:-162.667,0,-668.236 dDocent_Contig_10163 19 . G A 101.013 . AB=0;ABP=0;AC=4;AF=1;AN=4;AO=4;CIGAR=1X;DP=4;DPB=4;DPRA=0;EPP=11.6962;EPPR=0;GTI=0;LEN=1;MEANALT=1;MQM=29.5;MQMR=0;NS=2;NUMALT=1;ODDS=0;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=146;QR=0;RO=0;RPL=0;RPP=11.6962;RPPR=0;RPR=4;RUN=1;SAF=0;SAP=11.6962;SAR=4;SRF=0;SRP=0;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL ./.:.:.:.:.:.:.:. 1/1:2:0,2:0:0:2:77:-3.41158,-0.60206,0 1/1:2:0,2:0:0:2:69:-6.38754,-0.60206,0 dDocent_Contig_10164 36 . T C 118.783 . AB=0.375;ABP=5.18177;AC=2;AF=0.333333;AN=6;AO=7;CIGAR=2X;DP=35;DPB=35;DPRA=0;EPP=18.2106;EPPR=61.6401;GTI=0;LEN=1;MEANALT=1.33333;MQM=43.2857;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=0;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=282;QR=1076;RO=27;RPL=0;RPP=18.2106;RPPR=61.6401;RPR=7;RUN=1;SAF=7;SAP=18.2106;SAR=0;SRF=27;SRP=61.6401;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|1:13:8,5:8:322:5:202:-13.0786,0,-25.4353 0|0:19:18,1:18:713:1:41:0,-2.39855,-61.1766 0|1:3:1,1:1:41:1:39:-2.2358,0,-3.08305 dDocent_Contig_10165 15 . C A 122.905 . AB=0.24;ABP=17.6895;AC=1;AF=0.166667;AN=6;AO=6;CIGAR=1X;DP=60;DPB=60;DPRA=1.42857;EPP=16.0391;EPPR=120.27;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=1.73472e-18;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=233;QR=2144;RO=54;RPL=0;RPP=16.0391;RPPR=120.27;RPR=6;RUN=1;SAF=6;SAP=16.0391;SAR=0;SRF=54;SRP=120.27;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:25:19,6:19:757:6:233:-13.8134,0,-60.9249 0/0:11:11,0:11:434:0:0:0,-3.31133,-39.4133 0/0:24:24,0:24:953:0:0:0,-7.22472,-86.0729 dDocent_Contig_10167 25 . T A 134.238 . AB=0.285714;ABP=11.386;AC=1;AF=0.166667;AN=6;AO=6;CIGAR=1X;DP=58;DPB=58;DPRA=1.13514;EPP=8.80089;EPPR=99.2232;GTI=0;LEN=1;MEANALT=1;MQM=55.8333;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=0;PAIREDR=0.923077;PAO=0;PQA=0;PQR=0;PRO=0;QA=241;QR=2087;RO=52;RPL=0;RPP=16.0391;RPPR=115.927;RPR=6;RUN=1;SAF=1;SAP=8.80089;SAR=5;SRF=50;SRP=99.2232;SRR=2;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:34:34,0:34:1369:0:0:0,-10.235,-123.466 0/0:3:3,0:3:114:0:0:0,-0.90309,-10.6301 0/1:21:15,6:15:604:6:241:-15.2476,0,-48.3766 dDocent_Contig_10168 9 . A T 241.887 . AB=0.324324;ABP=12.9286;AC=2;AF=0.333333;AN=6;AO=12;CIGAR=1X;DP=53;DPB=53;DPRA=1.15625;EPP=29.068;EPPR=92.0407;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=424;QR=1453;RO=41;RPL=0;RPP=29.068;RPPR=92.0407;RPR=12;RUN=1;SAF=12;SAP=29.068;SAR=0;SRF=41;SRP=92.0407;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:16:16,0:16:569:0:0:0,-4.81648,-51.5325 0/1:24:17,7:17:614:7:231:-13.8837,0,-48.3568 0/1:13:8,5:8:270:5:193:-13.828,0,-20.7094 dDocent_Contig_10169 68 . T C 81.5956 . AB=0.181818;ABP=32.0291;AC=2;AF=0.333333;AN=6;AO=6;CIGAR=1X;DP=41;DPB=41;DPRA=2.0625;EPP=16.0391;EPPR=79.0118;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=231;QR=1265;RO=35;RPL=6;RPP=16.0391;RPPR=79.0118;RPR=0;RUN=1;SAF=6;SAP=16.0391;SAR=0;SRF=35;SRP=79.0118;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:29:24,5:24:869:5:199:-9.55869,0,-69.7955 0/0:8:8,0:8:290:0:0:0,-2.40824,-26.4486 0/1:4:3,1:3:106:1:32:-1.99519,0,-8.68498 dDocent_Contig_10171 21 . T G 376.889 . AB=0.434783;ABP=3.86001;AC=4;AF=0.666667;AN=6;AO=13;CIGAR=1X;DP=26;DPB=26;DPRA=0;EPP=31.2394;EPPR=31.2394;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=522;QR=519;RO=13;RPL=0;RPP=31.2394;RPPR=31.2394;RPR=13;RUN=1;SAF=13;SAP=31.2394;SAR=0;SRF=13;SRP=31.2394;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:9:6,3:6:244:3:123:-8.75552,0,-19.6296 0/1:14:7,7:7:275:7:277:-21.0835,0,-20.9019 1/1:3:0,3:0:0:3:122:-11.3725,-0.90309,0 dDocent_Contig_10173 27 . A T 138.131 . AB=0.141176;ABP=98.0697;AC=3;AF=0.5;AN=6;AO=12;CIGAR=1X;DP=85;DPB=85;DPRA=0;EPP=29.068;EPPR=161.528;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=473;QR=2821;RO=73;RPL=0;RPP=29.068;RPPR=161.528;RPR=12;RUN=1;SAF=12;SAP=29.068;SAR=0;SRF=73;SRP=161.528;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:44:40,4:40:1557:4:152:-0.802332,0,-127.132 0/1:15:13,2:13:503:2:79:-2.98179,0,-41.097 0/1:26:20,6:20:761:6:242:-14.3305,0,-60.9851 dDocent_Contig_10174 174 . T G 316.415 . AB=0.333333;ABP=11.6962;AC=1;AF=0.166667;AN=6;AO=12;CIGAR=1X;DP=55;DPB=55;DPRA=3.78947;EPP=29.068;EPPR=96.3836;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=485;QR=1715;RO=43;RPL=12;RPP=29.068;RPPR=96.3836;RPR=0;RUN=1;SAF=0;SAP=29.068;SAR=12;SRF=0;SRP=96.3836;SRR=43;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:36:24,12:24:956:12:485:-33.1642,0,-75.5009 0/0:3:3,0:3:117:0:0:0,-0.90309,-10.9098 0/0:16:16,0:16:642:0:0:0,-4.81648,-58.1142 dDocent_Contig_10175 39 . G A 108.263 . AB=0.5;ABP=3.0103;AC=1;AF=0.166667;AN=6;AO=4;CIGAR=1X;DP=20;DPB=20;DPRA=1.33333;EPP=11.6962;EPPR=37.7539;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=163;QR=618;RO=16;RPL=0;RPP=11.6962;RPPR=37.7539;RPR=4;RUN=1;SAF=4;SAP=11.6962;SAR=0;SRF=16;SRP=37.7539;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:5:5,0:5:177:0:0:0,-1.50515,-16.266 0/1:8:4,4:4:163:4:163:-12.6502,0,-12.6502 0/0:7:7,0:7:278:0:0:0,-2.10721,-25.3892 dDocent_Contig_10177 7 . G A 402.028 . AB=0.276923;ABP=31.1058;AC=2;AF=0.333333;AN=6;AO=20;CIGAR=1X;DP=92;DPB=92;DPRA=0;EPP=46.4397;EPPR=146.452;GTI=0;LEN=1;MEANALT=1.33333;MQM=60;MQMR=31.6143;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=0.442857;PAO=0;PQA=0;PQR=0;PRO=0;QA=769;QR=2278;RO=70;RPL=0;RPP=46.4397;RPPR=155.013;RPR=20;RUN=1;SAF=20;SAP=46.4397;SAR=0;SRF=69;SRP=146.452;SRR=1;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:44:28,14:28:854:14:539:-35.9974,0,-42.7275 0/1:21:17,4:17:566:4:152:-7.728,0,-14.2219 0/0:27:25,2:25:858:2:78:0,-0.724337,-34.1563 dDocent_Contig_10181 7 . G A 774.494 . AB=0.181818;ABP=215.815;AC=2;AF=0.333333;AN=6;AO=54;CIGAR=1X;DP=378;DPB=378;DPRA=0;EPP=120.27;EPPR=392.254;GTI=0;LEN=1;MEANALT=2.66667;MQM=60;MQMR=58.9209;NS=3;NUMALT=1;ODDS=0;PAIRED=0.833333;PAIREDR=0.699367;PAO=0;PQA=0;PQR=0;PRO=0;QA=2053;QR=10261;RO=316;RPL=0;RPP=120.27;RPPR=689.196;RPR=54;RUN=1;SAF=54;SAP=120.27;SAR=0;SRF=277;SRP=392.254;SRR=39;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:127:96,27:96:3098:27:1030:-55.7548,0,-240.738 0/0:136:125,10:125:4168:10:370:0,-7.19641,-340.696 0/1:115:95,17:95:2995:17:653:-25.2176,0,-235.892 dDocent_Contig_10182 107 . N T 408.308 . AB=0;ABP=0;AC=4;AF=1;AN=4;AO=13;CIGAR=1X;DP=13;DPB=13;DPRA=0;EPP=31.2394;EPPR=0;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=0;NS=2;NUMALT=1;ODDS=0;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=443;QR=0;RO=0;RPL=0;RPP=31.2394;RPPR=0;RPR=13;RUN=1;SAF=0;SAP=31.2394;SAR=13;SRF=0;SRP=0;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 1/1:11:0,11:0:0:11:377:-34.2609,-3.31133,0 1/1:2:0,2:0:0:2:66:-6.26836,-0.60206,0 ./.:.:.:.:.:.:.:. dDocent_Contig_10184 17 . T C 236.838 . AB=0.234043;ABP=31.8863;AC=2;AF=0.333333;AN=6;AO=11;CIGAR=1X;DP=68;DPB=68;DPRA=1.11905;EPP=26.8965;EPPR=126.784;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=59.0351;NS=3;NUMALT=1;ODDS=0;PAIRED=0.818182;PAIREDR=0.877193;PAO=0;PQA=0;PQR=0;PRO=0;QA=451;QR=2306;RO=57;RPL=0;RPP=26.8965;RPPR=126.784;RPR=11;RUN=1;SAF=11;SAP=26.8965;SAR=0;SRF=57;SRP=126.784;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:21:21,0:21:851:0:0:0,-6.32163,-76.6753 0/1:8:5,3:5:204:3:123:-9.05655,0,-16.3358 0/1:39:31,8:31:1251:8:328:-18.1502,0,-101.119 dDocent_Contig_10185 7 . G A 227.052 . AB=0.571429;ABP=3.63072;AC=1;AF=0.166667;AN=6;AO=8;CIGAR=1X;DP=42;DPB=42;DPRA=1;EPP=20.3821;EPPR=74.6689;GTI=0;LEN=1;MEANALT=1;MQM=59.625;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=0.625;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=312;QR=1044;RO=33;RPL=0;RPP=20.3821;RPPR=74.6689;RPR=8;RUN=1;SAF=8;SAP=20.3821;SAR=0;SRF=33;SRP=74.6689;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:14:6,8:6:197:8:312:-24.2281,0,-13.8329 0/0:18:17,0:17:525:0:0:0,-5.11751,-47.2117 0/0:10:10,0:10:322:0:0:0,-3.0103,-29.2868 dDocent_Contig_10186 44 . A G 157.559 . AB=0.4;ABP=4.31318;AC=1;AF=0.166667;AN=6;AO=6;CIGAR=1X;DP=31;DPB=31;DPRA=1.875;EPP=16.0391;EPPR=57.2971;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=8.67362e-19;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=238;QR=969;RO=25;RPL=0;RPP=16.0391;RPPR=57.2971;RPR=6;RUN=1;SAF=6;SAP=16.0391;SAR=0;SRF=25;SRP=57.2971;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:15:9,6:9:360:6:238:-17.2784,0,-28.2474 0/0:2:2,0:2:79:0:0:0,-0.60206,-7.49724 0/0:14:14,0:14:530:0:0:0,-4.21442,-48.0348 dDocent_Contig_10188 14 . C T 287.26 . AB=0.222222;ABP=15.074;AC=1;AF=0.166667;AN=6;AO=4;CIGAR=2M2I1M3X;DP=64;DPB=68.1667;DPRA=0;EPP=11.6962;EPPR=94.2121;GTI=0;LEN=1;MEANALT=2;MQM=60;MQMR=60;NS=3;NUMALT=3;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=160;QR=1569;RO=42;RPL=0;RPP=11.6962;RPPR=94.2121;RPR=4;RUN=1;SAF=4;SAP=11.6962;SAR=0;SRF=42;SRP=94.2121;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|0:31:23,8,0,0:23:875:8,0,0:245,0,0:-13.0095,0,-69.729,-19.9331,-72.1373,-91.7452,-19.9331,-72.1373,-91.7452,-91.7452 0|0:15:6,5,0,3:6:213:5,0,3:170,0,116:-11.9727,0,-15.8497,-13.7788,-17.3548,-31.1349,-4.23088,-7.81356,-21.5985,-20.6954 0|1:18:13,0,4,1:13:481:0,4,1:0,160,40:-9.26673,-13.1801,-52.502,0,-39.3157,-38.1116,-9.88503,-49.2056,-36.0185,-48.9046 dDocent_Contig_10189 18 . T C 832.985 . AB=0.608696;ABP=7.73089;AC=3;AF=0.5;AN=6;AO=28;CIGAR=2M2X;DP=46;DPB=46;DPRA=0;EPP=63.8115;EPPR=42.0968;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=3.46945e-18;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=1129;QR=715;RO=18;RPL=0;RPP=63.8115;RPPR=42.0968;RPR=28;RUN=1;SAF=28;SAP=63.8115;SAR=0;SRF=18;SRP=42.0968;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|1:30:9,21:9:365:21:854:-68.1394,0,-24.1842 0|1:7:2,5:2:80:5:200:-16.2718,0,-5.48436 0|1:9:7,2:7:270:2:75:-4.40953,0,-21.9485 dDocent_Contig_10190 36 . T G 483.252 . AB=0.486486;ABP=3.06899;AC=2;AF=0.333333;AN=6;AO=19;CIGAR=1X;DP=50;DPB=50;DPRA=0;EPP=44.2683;EPPR=68.1545;GTI=0;LEN=1;MEANALT=1.33333;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=0.866667;PAO=0;PQA=0;PQR=0;PRO=0;QA=732;QR=1199;RO=30;RPL=0;RPP=44.2683;RPPR=68.1545;RPR=19;RUN=1;SAF=19;SAP=44.2683;SAR=0;SRF=30;SRP=68.1545;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:18:11,7:11:433:7:256:-17.9614,0,-33.9016 0/1:19:7,11:7:278:11:437:-33.8853,0,-19.5872 0/0:13:12,1:12:488:1:39:0,-0.0168255,-40.3743 dDocent_Contig_10191 21 . T C 80.4344 . AB=0.6;ABP=3.44459;AC=1;AF=0.166667;AN=6;AO=4;CIGAR=1X;DP=48;DPB=48;DPRA=0.911765;EPP=11.6962;EPPR=98.5551;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=163;QR=1732;RO=44;RPL=0;RPP=11.6962;RPPR=98.5551;RPR=4;RUN=1;SAF=4;SAP=11.6962;SAR=0;SRF=44;SRP=98.5551;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:26:25,1:25:979:1:41:0,-3.73221,-84.3072 0/0:17:17,0:17:671:0:0:0,-5.11751,-60.7192 0/1:5:2,3:2:82:3:122:-9.86734,0,-6.27453 dDocent_Contig_10192 66 . C T 55.633 . AB=0.333333;ABP=5.18177;AC=1;AF=0.166667;AN=6;AO=3;CIGAR=1X;DP=29;DPB=29;DPRA=0.9;EPP=9.52472;EPPR=59.4686;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=105;QR=909;RO=26;RPL=3;RPP=9.52472;RPPR=59.4686;RPR=0;RUN=1;SAF=3;SAP=9.52472;SAR=0;SRF=26;SRP=59.4686;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:9:6,3:6:218:3:105:-7.08617,0,-17.2635 0/0:7:7,0:7:246:0:0:0,-2.10721,-22.4808 0/0:13:13,0:13:445:0:0:0,-3.91339,-40.3754 dDocent_Contig_10193 88 . T C 75.1309 . AB=0.227273;ABP=17.2236;AC=2;AF=0.333333;AN=6;AO=5;CIGAR=1X;DP=36;DPB=36;DPRA=0.785714;EPP=13.8677;EPPR=70.3259;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=175;QR=1089;RO=31;RPL=5;RPP=13.8677;RPPR=70.3259;RPR=0;RUN=1;SAF=5;SAP=13.8677;SAR=0;SRF=31;SRP=70.3259;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:14:14,0:14:492:0:0:0,-4.21442,-44.6119 0/1:12:8,4:8:279:4:140:-9.33257,0,-21.8357 0/1:10:9,1:9:318:1:35:-0.488329,0,-25.9505 dDocent_Contig_10194 14 . T C 173.683 . AB=0.189655;ABP=51.5315;AC=2;AF=0.333333;AN=6;AO=11;CIGAR=1X;DP=85;DPB=85;DPRA=1.07407;EPP=26.8965;EPPR=163.699;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=59.7297;NS=3;NUMALT=1;ODDS=3.46945e-18;PAIRED=1;PAIREDR=0.864865;PAO=0;PQA=0;PQR=0;PRO=0;QA=418;QR=2601;RO=74;RPL=0;RPP=26.8965;RPPR=163.699;RPR=11;RUN=1;SAF=11;SAP=26.8965;SAR=0;SRF=74;SRP=163.699;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:32:28,4:28:968:4:157:-4.87547,0,-77.7522 0/1:26:19,7:19:677:7:261:-16.0155,0,-53.4255 0/0:27:27,0:27:956:0:0:0,-8.12781,-86.3443 dDocent_Contig_10195 73 . T G 144.955 . AB=0.28125;ABP=16.3106;AC=3;AF=0.5;AN=6;AO=9;CIGAR=1X2M1X;DP=32;DPB=32;DPRA=0;EPP=22.5536;EPPR=52.9542;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=317;QR=778;RO=23;RPL=9;RPP=22.5536;RPPR=52.9542;RPR=0;RUN=1;SAF=9;SAP=22.5536;SAR=0;SRF=23;SRP=52.9542;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|1:16:13,3:13:447:3:106:-5.07216,0,-35.7423 0|1:13:8,5:8:273:5:182:-12.8218,0,-20.989 0|1:3:2,1:2:58:1:29:-1.99657,0,-4.60553 dDocent_Contig_10196 35 . A T 54.2289 . AB=0.138889;ABP=43.7857;AC=2;AF=0.333333;AN=6;AO=5;CIGAR=1X;DP=43;DPB=43;DPRA=2.57143;EPP=13.8677;EPPR=85.5263;GTI=0;LEN=1;MEANALT=1;MQM=44.8;MQMR=58.9737;NS=3;NUMALT=1;ODDS=0;PAIRED=0;PAIREDR=0.815789;PAO=0;PQA=0;PQR=0;PRO=0;QA=199;QR=1514;RO=38;RPL=0;RPP=13.8677;RPPR=85.5263;RPR=5;RUN=1;SAF=5;SAP=13.8677;SAR=0;SRF=38;SRP=85.5263;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:23:19,4:19:768:4:158:-6.94391,0,-62.5172 0/0:7:7,0:7:262:0:0:0,-2.10721,-23.8526 0/1:13:12,1:12:484:1:41:-0.107606,0,-39.9978 dDocent_Contig_10198 7 . G A 391.258 . AB=0.428571;ABP=4.56135;AC=2;AF=0.333333;AN=6;AO=15;CIGAR=1X;DP=39;DPB=39;DPRA=4.375;EPP=35.5824;EPPR=50.7827;GTI=0;LEN=1;MEANALT=2;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=581;QR=737;RO=22;RPL=0;RPP=35.5824;RPPR=50.7827;RPR=15;RUN=1;SAF=15;SAP=35.5824;SAR=0;SRF=22;SRP=50.7827;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:21:10,10:10:332:10:388:-28.9766,0,-23.8985 0/0:4:4,0:4:108:0:0:0,-1.20412,-9.98721 0/1:14:8,5:8:297:5:193:-13.672,0,-23.0302 dDocent_Contig_10199 13 . A G 509.721 . AB=0.45;ABP=3.44459;AC=3;AF=0.5;AN=6;AO=16;CIGAR=1X3M1X;DP=43;DPB=43;DPRA=0.84375;EPP=37.7539;EPPR=61.6401;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=1.73472e-18;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=642;QR=1055;RO=27;RPL=0;RPP=37.7539;RPPR=61.6401;RPR=16;RUN=1;SAF=16;SAP=37.7539;SAR=0;SRF=27;SRP=61.6401;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|0:16:16,0:16:626:0:0:0,-4.81648,-56.6744 1|1:7:0,7:0:0:7:279:-25.4811,-2.10721,0 0|1:20:11,9:11:429:9:363:-27.0138,0,-32.9382 dDocent_Contig_10201 21 . T G 305.929 . AB=0.5;ABP=3.0103;AC=2;AF=0.333333;AN=6;AO=11;CIGAR=1X;DP=29;DPB=29;DPRA=1.57143;EPP=26.8965;EPPR=42.0968;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=1.73472e-18;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=444;QR=597;RO=18;RPL=0;RPP=26.8965;RPPR=42.0968;RPR=11;RUN=1;SAF=11;SAP=26.8965;SAR=0;SRF=18;SRP=42.0968;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:2:1,1:1:38:1:41:-3.49251,0,-3.19521 0/1:20:10,10:10:353:10:403:-30.6096,0,-26.0841 0/0:7:7,0:7:206:0:0:0,-2.10721,-18.8284 dDocent_Contig_10202 30 . A C 904.654 . AB=0.356436;ABP=21.0916;AC=3;AF=0.5;AN=6;AO=36;CIGAR=1M1D1M1X;DP=101;DPB=92;DPRA=0;EPP=81.1833;EPPR=144.156;GTI=0;LEN=1;MEANALT=1;MQM=59.0278;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=0.916667;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=1394;QR=2598;RO=65;RPL=0;RPP=81.1833;RPPR=144.156;RPR=36;RUN=1;SAF=36;SAP=81.1833;SAR=0;SRF=65;SRP=144.156;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|1:63:50,13:50:1993:13:506:-26.9187,0,-160.607 0|1:16:9,7:9:365:7:261:-18.9341,0,-28.3984 0|1:22:6,16:6:240:16:627:-50.1355,0,-15.353 dDocent_Contig_10203 18 . T A 111.872 . AB=0.3125;ABP=7.89611;AC=1;AF=0.166667;AN=6;AO=6;CIGAR=1X;DP=68;DPB=68;DPRA=1.04545;EPP=16.0391;EPPR=137.642;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=235;QR=2465;RO=62;RPL=0;RPP=16.0391;RPPR=137.642;RPR=6;RUN=1;SAF=6;SAP=16.0391;SAR=0;SRF=62;SRP=137.642;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:30:29,1:29:1160:1:41:0,-4.93633,-100.584 0/1:16:11,5:11:437:5:194:-13.0111,0,-34.8683 0/0:22:22,0:22:868:0:0:0,-6.62266,-78.4254 dDocent_Contig_10204 35 . G T 198.629 . AB=0.297297;ABP=16.2152;AC=1;AF=0.166667;AN=6;AO=11;CIGAR=1X;DP=56;DPB=56;DPRA=3.89474;EPP=26.8965;EPPR=100.727;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=358;QR=1693;RO=45;RPL=0;RPP=26.8965;RPPR=100.727;RPR=11;RUN=1;SAF=11;SAP=26.8965;SAR=0;SRF=45;SRP=100.727;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:37:26,11:26:960:11:358:-21.3854,0,-75.5606 0/0:2:2,0:2:79:0:0:0,-0.60206,-7.49763 0/0:17:17,0:17:654:0:0:0,-5.11751,-59.194 dDocent_Contig_10205 98 . N A 66.4848 . AB=0;ABP=0;AC=2;AF=1;AN=2;AO=2;CIGAR=1X;DP=2;DPB=2;DPRA=0;EPP=3.0103;EPPR=0;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=0;NS=1;NUMALT=1;ODDS=5.99146;PAIRED=1;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=70;QR=0;RO=0;RPL=2;RPP=7.35324;RPPR=0;RPR=0;RUN=1;SAF=1;SAP=3.0103;SAR=1;SRF=0;SRP=0;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL ./.:.:.:.:.:.:.:. 1/1:2:0,2:0:0:2:70:-6.6474,-0.60206,0 ./.:.:.:.:.:.:.:. dDocent_Contig_10207 106 . N G 95.6128 . AB=0;ABP=0;AC=2;AF=1;AN=2;AO=5;CIGAR=2X;DP=5;DPB=5;DPRA=0;EPP=13.8677;EPPR=0;GTI=0;LEN=1;MEANALT=1;MQM=21;MQMR=0;NS=1;NUMALT=1;ODDS=8.07091;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=170;QR=0;RO=0;RPL=0;RPP=13.8677;RPPR=0;RPR=5;RUN=1;SAF=0;SAP=13.8677;SAR=5;SRF=0;SRP=0;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL .:.:.:.:.:.:.:. .:.:.:.:.:.:.:. 1|1:5:0,5:0:0:5:170:-9.56114,-1.50515,0 dDocent_Contig_10208 118 . C A 54.5748 . AB=0.222222;ABP=15.074;AC=2;AF=0.333333;AN=6;AO=4;CIGAR=1X2M1X;DP=26;DPB=26;DPRA=1.125;EPP=3.0103;EPPR=50.7827;GTI=0;LEN=1;MEANALT=1;MQM=49;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=0;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=153;QR=732;RO=22;RPL=0;RPP=11.6962;RPPR=50.7827;RPR=4;RUN=1;SAF=2;SAP=3.0103;SAR=2;SRF=0;SRP=50.7827;SRR=22;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|1:10:8,2:8:266:2:77:-4.23054,0,-21.2539 0|1:8:6,2:6:204:2:76:-4.7487,0,-16.2855 0|0:8:8,0:8:262:0:0:0,-2.40824,-23.8992 dDocent_Contig_10209 11 . T A 291.753 . AB=0.269231;ABP=15.0369;AC=2;AF=0.333333;AN=6;AO=7;CIGAR=3M9I3M2X;DP=50;DPB=66.625;DPRA=0;EPP=18.2106;EPPR=76.8404;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=2;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=266;QR=1244;RO=34;RPL=0;RPP=18.2106;RPPR=76.8404;RPR=7;RUN=1;SAF=7;SAP=18.2106;SAR=0;SRF=34;SRP=76.8404;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|0:24:15,7,0:15:555:7,0:270,0:-17.8402,0,-43.4877,-22.3556,-45.5949,-67.7795 0|1:9:7,0,2:7:251:0,2:0,78:-4.69403,-6.80124,-27.248,0,-20.8295,-20.2274 0|1:17:12,0,5:12:438:0,5:0,188:-12.1637,-15.776,-51.5506,0,-36.1471,-34.6419 dDocent_Contig_10210 44 . A C 459.107 . AB=0.470588;ABP=3.26577;AC=1;AF=0.25;AN=4;AO=16;CIGAR=1X;DP=44;DPB=44;DPRA=3.4;EPP=37.7539;EPPR=63.8115;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=2;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=639;QR=1115;RO=28;RPL=0;RPP=37.7539;RPPR=63.8115;RPR=16;RUN=1;SAF=16;SAP=37.7539;SAR=0;SRF=28;SRP=63.8115;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:34:18,16:18:719:16:639:-47.6097,0,-54.8015 ./.:.:.:.:.:.:.:. 0/0:10:10,0:10:396:0:0:0,-3.0103,-35.9956 dDocent_Contig_10212 7 . G A 1408.44 . AB=0.341317;ABP=39.5352;AC=3;AF=0.5;AN=6;AO=57;CIGAR=1X;DP=167;DPB=167;DPRA=0;EPP=126.784;EPPR=231.015;GTI=0;LEN=1;MEANALT=2;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=2143;QR=3397;RO=105;RPL=0;RPP=126.784;RPPR=231.015;RPR=57;RUN=1;SAF=57;SAP=126.784;SAR=0;SRF=105;SRP=231.015;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:93:46,43:46:1476:43:1607:-117.92,0,-106.123 0/1:45:41,4:41:1315:4:151:-0.411,0,-105.058 0/1:29:18,10:18:606:10:385:-26.4429,0,-46.2927 dDocent_Contig_10213 16 . G A 300.076 . 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T A 126.087 . AB=0.184211;ABP=35.9253;AC=1;AF=0.166667;AN=6;AO=7;CIGAR=1X;DP=53;DPB=53;DPRA=5.06667;EPP=18.2106;EPPR=102.898;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=280;QR=1823;RO=46;RPL=0;RPP=18.2106;RPPR=102.898;RPR=7;RUN=1;SAF=7;SAP=18.2106;SAR=0;SRF=46;SRP=102.898;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:38:31,7:31:1220:7:280:-14.1315,0,-98.6255 0/0:5:5,0:5:203:0:0:0,-1.50515,-18.6531 0/0:10:10,0:10:400:0:0:0,-3.0103,-36.3588 dDocent_Contig_10219 7 . G A 6775.97 . 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AB=0.192308;ABP=24.391;AC=2;AF=0.333333;AN=6;AO=5;CIGAR=1X;DP=31;DPB=31;DPRA=2.6;EPP=13.8677;EPPR=59.4686;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=195;QR=891;RO=26;RPL=0;RPP=13.8677;RPPR=59.4686;RPR=5;RUN=1;SAF=5;SAP=13.8677;SAR=0;SRF=26;SRP=59.4686;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:20:18,2:18:620:2:78:-1.38287,0,-50.0916 0/0:5:5,0:5:183:0:0:0,-1.50515,-16.8263 0/1:6:3,3:3:88:3:117:-9.1042,0,-6.40329 dDocent_Contig_10235 7 . G A 542.417 . AB=0.0689655;ABP=96.6082;AC=2;AF=0.333333;AN=6;AO=4;CIGAR=1X2M3X5M1X3M1X3M;DP=82;DPB=82.2632;DPRA=0;EPP=11.6962;EPPR=50.7827;GTI=0;LEN=1;MEANALT=6.5;MQM=25;MQMR=60;NS=3;NUMALT=9;ODDS=0;PAIRED=0;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=100;QR=856;RO=22;RPL=0;RPP=11.6962;RPPR=50.7827;RPR=4;RUN=1;SAF=4;SAP=11.6962;SAR=0;SRF=22;SRP=50.7827;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|1:40:13,0,7,2,3,3,0,1,5,5:13:512:0,7,2,3,3,0,1,5,5:0,267,50,118,107,0,27,90,203:-18.0152,-21.9285,-64.0769,0,-42.1636,-40.0563,-18.5786,-60.7258,-38.8133,-60.1238,-12.9509,-55.1038,-33.189,-51.7531,-54.2007,-13.2184,-55.3708,-33.4562,-52.0202,-46.3974,-54.4677,-21.9285,-64.0769,-42.1636,-60.7258,-55.1038,-55.3708,-64.0769,-19.8014,-61.9499,-40.0366,-58.5991,-52.9768,-53.2439,-61.9499,-61.6489,-16.7095,-58.848,-36.9398,-55.4995,-49.8771,-50.1442,-58.848,-56.722,-57.3429,-5.28527,-47.4451,-25.5278,-44.0944,-38.4708,-38.7379,-47.4451,-45.3181,-42.2192,-45.94 1|0:24:1,0,4,0,1,0,2,8,3,1:1:39:0,4,0,1,0,2,8,3,1:0,152,0,39,0,78,312,54,40:-34.5554,-34.8565,-38.0643,-22.4701,-25.6787,-24.4746,-34.8565,-38.0643,-25.6787,-38.0643,-31.6606,-34.8687,-22.4823,-34.8687,-34.5676,-34.8565,-38.0643,-25.6787,-38.0643,-34.8687,-38.0643,-28.4427,-31.651,-19.2638,-31.651,-28.455,-31.651,-31.0489,-9.18722,-12.3977,0,-12.3977,-9.19948,-12.3977,-5.97872,-9.98945,-31.7317,-34.9385,-22.5583,-34.9385,-31.744,-34.9385,-28.5274,-9.2836,-34.0354,-31.5587,-34.7668,-22.3804,-34.7668,-31.571,-34.7668,-28.3531,-9.09736,-31.642,-34.4658 0|0:18:8,3,1,2,0,0,3,0,0,1:8:305:3,1,2,0,0,3,0,0,1:116,39,50,0,0,112,0,0,41:-7.13585,0,-24.1418,-6.33366,-21.8368,-31.069,-6.21896,-21.7089,-28.0316,-30.636,-9.54409,-25.0449,-31.3701,-31.2381,-34.5775,-9.54409,-25.0449,-31.3701,-31.2381,-34.5775,-34.5775,-0.366969,-15.8745,-22.2009,-22.0732,-25.4088,-25.4088,-24.5057,-9.54409,-25.0449,-31.3701,-31.2381,-34.5775,-34.5775,-25.4088,-34.5775,-9.54409,-25.0449,-31.3701,-31.2381,-34.5775,-34.5775,-25.4088,-34.5775,-34.5775,-6.42257,-21.9253,-28.2509,-28.1201,-31.4585,-31.4585,-22.2894,-31.4585,-31.4585,-31.1574 dDocent_Contig_10236 37 . T G 190.724 . AB=0.259259;ABP=16.6021;AC=4;AF=0.666667;AN=6;AO=8;CIGAR=1X1M1X;DP=28;DPB=28;DPRA=0;EPP=20.3821;EPPR=46.4397;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=317;QR=786;RO=20;RPL=0;RPP=20.3821;RPPR=46.4397;RPR=8;RUN=1;SAF=8;SAP=20.3821;SAR=0;SRF=20;SRP=46.4397;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|1:17:11,6:11:439:6:237:-16.5851,0,-34.7472 1|1:1:0,1:0:0:1:40:-3.99568,-0.30103,0 0|1:10:9,1:9:347:1:40:-0.985379,0,-28.5743 dDocent_Contig_10237 26 . G A 1719.82 . AB=0.59596;ABP=10.9285;AC=3;AF=0.5;AN=6;AO=59;CIGAR=1X;DP=99;DPB=99;DPRA=0;EPP=131.127;EPPR=89.8692;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=51.8;NS=3;NUMALT=1;ODDS=0;PAIRED=0.186441;PAIREDR=0.75;PAO=0;PQA=0;PQR=0;PRO=0;QA=2293;QR=1576;RO=40;RPL=0;RPP=131.127;RPPR=89.8692;RPR=59;RUN=1;SAF=59;SAP=131.127;SAR=0;SRF=40;SRP=89.8692;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:58:20,38:20:777:38:1501:-117.88,0,-45.3613 0/1:15:12,3:12:478:3:117:-6.39384,0,-33.2279 0/1:26:8,18:8:321:18:675:-53.2311,0,-21.4308 dDocent_Contig_10238 12 . C A 115.355 . AB=0.277778;ABP=10.7311;AC=1;AF=0.25;AN=4;AO=5;CIGAR=1X;DP=30;DPB=30;DPRA=1.5;EPP=13.8677;EPPR=57.2971;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=2;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=203;QR=983;RO=25;RPL=0;RPP=13.8677;RPPR=57.2971;RPR=5;RUN=1;SAF=5;SAP=13.8677;SAR=0;SRF=25;SRP=57.2971;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL ./.:.:.:.:.:.:.:. 0/1:18:13,5:13:523:5:203:-13.2345,0,-41.9976 0/0:12:12,0:12:460:0:0:0,-3.61236,-41.7437 dDocent_Contig_10239 23 . T A 94.598 . AB=0.555556;ABP=3.25157;AC=1;AF=0.166667;AN=6;AO=6;CIGAR=1X;DP=26;DPB=26;DPRA=2.1;EPP=16.0391;EPPR=46.4397;GTI=0;LEN=1;MEANALT=1;MQM=52.1667;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=190;QR=784;RO=20;RPL=0;RPP=16.0391;RPPR=46.4397;RPR=6;RUN=1;SAF=6;SAP=16.0391;SAR=0;SRF=20;SRP=46.4397;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:9:4,5:4:158:5:155:-10.9815,0,-11.891 0/0:12:11,1:11:422:1:35:0,-0.113731,-34.8257 0/0:5:5,0:5:204:0:0:0,-1.50515,-18.744 dDocent_Contig_10240 17 . C A 446.974 . AB=0.371429;ABP=8.03571;AC=4;AF=0.666667;AN=6;AO=16;CIGAR=1X;DP=38;DPB=38;DPRA=0;EPP=37.7539;EPPR=50.7827;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=636;QR=889;RO=22;RPL=0;RPP=37.7539;RPPR=50.7827;RPR=16;RUN=1;SAF=16;SAP=37.7539;SAR=0;SRF=22;SRP=50.7827;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:27:15,12:15:603:12:476:-35.0604,0,-46.4794 1/1:3:0,3:0:0:3:119:-11.0945,-0.90309,0 0/1:8:7,1:7:286:1:41:-1.68633,0,-23.7066 dDocent_Contig_10241 14 . T A 73.9914 . AB=0.134615;ABP=63.3104;AC=2;AF=0.333333;AN=6;AO=10;CIGAR=1X;DP=100;DPB=100;DPRA=0;EPP=24.725;EPPR=198.443;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=406;QR=3582;RO=90;RPL=0;RPP=24.725;RPPR=198.443;RPR=10;RUN=1;SAF=10;SAP=24.725;SAR=0;SRF=90;SRP=198.443;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:48:45,3:45:1826:3:120:0,-3.26213,-153.354 0/1:10:7,3:7:273:3:123:-8.45449,0,-21.9216 0/1:42:38,4:38:1483:4:163:-2.41517,0,-121.058 dDocent_Contig_10242 8 . T C 46.0064 . AB=0.3;ABP=6.48466;AC=1;AF=0.25;AN=4;AO=4;CIGAR=1X;DP=23;DPB=23;DPRA=0;EPP=11.6962;EPPR=44.2683;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=2;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=142;QR=735;RO=19;RPL=0;RPP=11.6962;RPPR=44.2683;RPR=4;RUN=1;SAF=4;SAP=11.6962;SAR=0;SRF=19;SRP=44.2683;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:13:12,1:12:466:1:39:0,-0.0168255,-38.3955 0/1:10:7,3:7:269:3:103:-6.59854,0,-21.5639 ./.:.:.:.:.:.:.:. dDocent_Contig_10243 35 . G A 184.942 . AB=0.196078;ABP=43.9277;AC=2;AF=0.333333;AN=6;AO=10;CIGAR=1X;DP=62;DPB=62;DPRA=2.31818;EPP=24.725;EPPR=115.927;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=0.826923;PAO=0;PQA=0;PQR=0;PRO=0;QA=406;QR=2050;RO=52;RPL=0;RPP=24.725;RPPR=115.927;RPR=10;RUN=1;SAF=10;SAP=24.725;SAR=0;SRF=52;SRP=115.927;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:42:38,4:38:1507:4:162:-2.3237,0,-123.236 0/0:11:11,0:11:426:0:0:0,-3.31133,-38.6902 0/1:9:3,6:3:117:6:244:-19.6296,0,-8.20094 dDocent_Contig_10244 13 . G T 589.726 . AB=0.102041;ABP=70.4146;AC=0;AF=0;AN=6;AO=5;CIGAR=6M1X4M;DP=55;DPB=53.2727;DPRA=4.08333;EPP=13.8677;EPPR=57.2971;GTI=0;LEN=1;MEANALT=3.5;MQM=60;MQMR=60;NS=3;NUMALT=3;ODDS=6.93889e-18;PAIRED=0.8;PAIREDR=0.88;PAO=0;PQA=0;PQR=0;PRO=0;QA=205;QR=974;RO=25;RPL=0;RPP=13.8677;RPPR=57.2971;RPR=5;RUN=1;SAF=5;SAP=13.8677;SAR=0;SRF=25;SRP=57.2971;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|0:40:13,2,20,4:13:508:2,20,4:77,782,164:-60.3694,-57.9608,-99.1221,0,-35.4436,-35.7449,-50.743,-86.1855,-28.2241,-91.3036 0|0:9:6,1,1,1:6:227:1,1,1:39,41,41:-1.5812,-0.188103,-18.4724,0,-15.386,-18.2918,0,-15.386,-15.205,-18.2918 0|0:6:6,0,0,0:6:239:0,0,0:0,0,0:0,-1.80618,-21.8854,-1.80618,-21.8854,-21.8854,-1.80618,-21.8854,-21.8854,-21.8854 dDocent_Contig_10245 149 . G A 120.341 . AB=0.179487;ABP=37.8095;AC=1;AF=0.166667;AN=6;AO=7;CIGAR=1X;DP=53;DPB=53;DPRA=5.57143;EPP=18.2106;EPPR=102.898;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=277;QR=1846;RO=46;RPL=0;RPP=18.2106;RPPR=102.898;RPR=7;RUN=1;SAF=0;SAP=18.2106;SAR=7;SRF=0;SRP=102.898;SRR=46;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:39:32,7:32:1281:7:277:-13.557,0,-103.815 0/0:8:8,0:8:323:0:0:0,-2.40824,-29.4381 0/0:6:6,0:6:242:0:0:0,-1.80618,-22.1569 dDocent_Contig_10246 23 . A G 170.465 . AB=0.108696;ABP=64.1892;AC=3;AF=0.5;AN=6;AO=5;CIGAR=3X1M1X;DP=53;DPB=53;DPRA=0;EPP=13.8677;EPPR=76.8404;GTI=0;LEN=1;MEANALT=3;MQM=60;MQMR=60;NS=3;NUMALT=3;ODDS=6.93889e-18;PAIRED=1;PAIREDR=0.911765;PAO=0;PQA=0;PQR=0;PRO=0;QA=200;QR=1338;RO=34;RPL=0;RPP=13.8677;RPPR=76.8404;RPR=5;RUN=1;SAF=5;SAP=13.8677;SAR=0;SRF=34;SRP=76.8404;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|1:23:17,0,3,2:17:666:0,3,2:0,122,81:-4.94738,-10.0649,-64.8178,0,-54.7529,-53.8498,-3.38573,-58.1377,-48.0724,-57.5357 0|1:23:13,3,4,3:13:512:3,4,3:109,157,119:-9.00393,-4.02547,-45.2421,0,-33.2332,-40.9253,-3.11631,-36.3487,-32.3321,-44.3422 0|1:7:4,3,0,0:4:160:3,0,0:115,0,0:-8.61768,0,-12.6766,-9.8218,-13.5797,-23.0114,-9.8218,-13.5797,-23.0114,-23.0114 dDocent_Contig_10247 22 . C T 35.8079 . AB=0.162162;ABP=39.6906;AC=3;AF=0.5;AN=6;AO=6;CIGAR=1X;DP=37;DPB=37;DPRA=0;EPP=4.45795;EPPR=70.3259;GTI=0;LEN=1;MEANALT=1;MQM=38.6667;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=0.333333;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=214;QR=1222;RO=31;RPL=0;RPP=16.0391;RPPR=70.3259;RPR=6;RUN=1;SAF=2;SAP=4.45795;SAR=4;SRF=31;SRP=70.3259;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:25:22,3:22:868:3:112:-2.41464,0,-70.9064 0/1:7:6,1:6:239:1:34:-1.11641,0,-19.7772 0/1:5:3,2:3:115:2:68:-4.61973,0,-9.21806 dDocent_Contig_10248 127 . C A 32.9649 . AB=0.25;ABP=7.35324;AC=1;AF=0.25;AN=4;AO=2;CIGAR=1X;DP=16;DPB=16;DPRA=1;EPP=7.35324;EPPR=33.4109;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=2;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=78;QR=527;RO=14;RPL=0;RPP=7.35324;RPPR=33.4109;RPR=2;RUN=1;SAF=0;SAP=7.35324;SAR=2;SRF=0;SRP=33.4109;SRR=14;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:8:6,2:6:223:2:78:-4.99523,0,-18.0205 0/0:8:8,0:8:304:0:0:0,-2.40824,-27.7193 ./.:.:.:.:.:.:.:. dDocent_Contig_10249 8 . T C 889.342 . AB=0.11359;ABP=1281.77;AC=2;AF=0.333333;AN=6;AO=139;CIGAR=1X;DP=1356;DPB=1356;DPRA=0;EPP=304.845;EPPR=2643.52;GTI=0;LEN=1;MEANALT=1.33333;MQM=59.8417;MQMR=59.4153;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=0.990954;PAO=0;PQA=0;PQR=0;PRO=0;QA=5359;QR=46575;RO=1216;RPL=0;RPP=304.845;RPPR=2643.52;RPR=139;RUN=1;SAF=139;SAP=304.845;SAR=0;SRF=1216;SRP=2643.52;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:812:729,83:729:27950:83:3198:-43.5205,0,-2243.57 0/1:174:144,29:144:5480:29:1121:-48.9366,0,-440.943 0/0:370:343,27:343:13145:27:1040:0,-17.5064,-1085.78 dDocent_Contig_10250 39 . A G 505.891 . AB=0.333333;ABP=18.2106;AC=3;AF=0.5;AN=6;AO=21;CIGAR=1X;DP=63;DPB=63;DPRA=0;EPP=48.6112;EPPR=94.2121;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=0;PAIREDR=0.333333;PAO=0;PQA=0;PQR=0;PRO=0;QA=822;QR=1626;RO=42;RPL=0;RPP=48.6112;RPPR=94.2121;RPR=21;RUN=1;SAF=21;SAP=48.6112;SAR=0;SRF=42;SRP=94.2121;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:29:25,4:25:964:4:161:-6.14561,0,-78.3274 0/1:19:12,7:12:466:7:267:-18.665,0,-36.5664 0/1:15:5,10:5:196:10:394:-31.3014,0,-13.4984 dDocent_Contig_10252 12 . T C 316.141 . AB=0.428571;ABP=4.25114;AC=2;AF=0.333333;AN=6;AO=12;CIGAR=1X1M1X;DP=40;DPB=40;DPRA=1.16667;EPP=29.068;EPPR=63.8115;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=59.5;NS=3;NUMALT=1;ODDS=1.73472e-18;PAIRED=0.166667;PAIREDR=0.964286;PAO=0;PQA=0;PQR=0;PRO=0;QA=476;QR=1119;RO=28;RPL=0;RPP=29.068;RPPR=63.8115;RPR=12;RUN=1;SAF=12;SAP=29.068;SAR=0;SRF=28;SRP=63.8115;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|1:23:13,10:13:526:10:402:-29.6162,0,-40.7633 0|1:5:3,2:3:112:2:74:-5.52073,0,-8.94115 0|0:12:12,0:12:481:0:0:0,-3.61236,-43.5378 dDocent_Contig_10253 42 . C T 73938 . AB=0;ABP=0;AC=6;AF=1;AN=6;AO=2120;CIGAR=1X;DP=2153;DPB=2153;DPRA=0;EPP=150.916;EPPR=59.7581;GTI=0;LEN=1;MEANALT=1.66667;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=0;PAIREDR=0.9;PAO=0;PQA=0;PQR=0;PRO=0;QA=83410;QR=1173;RO=30;RPL=0;RPP=4606.53;RPPR=68.1545;RPR=2120;RUN=1;SAF=1250;SAP=150.916;SAR=870;SRF=29;SRP=59.7581;SRR=1;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 1/1:785:21,761:21:827:761:29968:-2619.78,-161.034,0 1/1:895:8,887:8:305:887:34802:-3101.48,-241.618,0 1/1:473:1,472:1:41:472:18640:-1672.06,-138.293,0 dDocent_Contig_10255 10 . T A 194.606 . AB=0.409091;ABP=4.58955;AC=2;AF=0.333333;AN=6;AO=9;CIGAR=1X;DP=25;DPB=25;DPRA=3.66667;EPP=22.5536;EPPR=37.7539;GTI=0;LEN=1;MEANALT=1;MQM=47.1111;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=0.555556;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=361;QR=641;RO=16;RPL=0;RPP=22.5536;RPPR=37.7539;RPR=9;RUN=1;SAF=9;SAP=22.5536;SAR=0;SRF=16;SRP=37.7539;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:11:6,5:6:234:5:200:-11.4194,0,-18.1153 0/0:3:3,0:3:121:0:0:0,-0.90309,-11.28 0/1:11:7,4:7:286:4:161:-11.5639,0,-22.8035 dDocent_Contig_10256 22 . A G 529.706 . AB=0.252525;ABP=55.674;AC=3;AF=0.5;AN=6;AO=25;CIGAR=2X;DP=99;DPB=99;DPRA=0;EPP=57.2971;EPPR=159.356;GTI=0;LEN=1;MEANALT=1.33333;MQM=53.84;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=0.96;PAIREDR=0.805556;PAO=0;PQA=0;PQR=0;PRO=0;QA=990;QR=2875;RO=72;RPL=0;RPP=57.2971;RPPR=159.356;RPR=25;RUN=1;SAF=25;SAP=57.2971;SAR=0;SRF=72;SRP=159.356;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|1:49:32,15:32:1290:15:591:-37.8333,0,-101.815 0|1:18:13,5:13:505:5:196:-12.596,0,-40.3714 0|1:32:27,5:27:1080:5:203:-8.06415,0,-87.8574 dDocent_Contig_10257 21 . C A 1362.14 . AB=0.621622;ABP=12.5178;AC=3;AF=0.5;AN=6;AO=46;CIGAR=1X2M;DP=74;DPB=74;DPRA=0;EPP=102.898;EPPR=59.4686;GTI=0;LEN=1;MEANALT=1.33333;MQM=60;MQMR=60;NS=3;NUMALT=2;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=1809;QR=1019;RO=26;RPL=0;RPP=102.898;RPPR=59.4686;RPR=46;RUN=1;SAF=46;SAP=102.898;SAR=0;SRF=26;SRP=59.4686;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|1:40:12,2,26:12:459:2,26:80,1025:-80.7025,-77.7243,-114.776,0,-31.0504,-29.8162 0|1:14:7,0,7:7:281:0,7:0,278:-21.1757,-23.2829,-46.4389,0,-23.5548,-21.4476 0|1:20:7,0,13:7:279:0,13:0,506:-39.859,-41.9663,-64.945,0,-23.3736,-19.4603 dDocent_Contig_10258 24 . A G 73.4158 . AB=0.162791;ABP=45.4803;AC=2;AF=0.333333;AN=6;AO=7;CIGAR=1X;DP=44;DPB=44;DPRA=21.5;EPP=18.2106;EPPR=83.3548;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=239;QR=1471;RO=37;RPL=0;RPP=18.2106;RPPR=83.3548;RPR=7;RUN=1;SAF=7;SAP=18.2106;SAR=0;SRF=37;SRP=83.3548;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:28:25,3:25:994:3:91:-0.0553865,0,-81.3235 0/0:1:1,0:1:41:0:0:0,-0.30103,-4.09457 0/1:15:11,4:11:436:4:148:-9.16312,0,-35.0723 dDocent_Contig_10260 36 . G T 245.936 . AB=0.230769;ABP=35.7494;AC=2;AF=0.333333;AN=6;AO=12;CIGAR=1X;DP=58;DPB=58;DPRA=4.33333;EPP=29.068;EPPR=100.727;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=478;QR=1812;RO=45;RPL=0;RPP=29.068;RPPR=100.727;RPR=12;RUN=1;SAF=12;SAP=29.068;SAR=0;SRF=45;SRP=100.727;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:25:21,4:21:850:4:163:-7.53268,0,-69.2861 0/0:6:5,0:5:198:0:0:0,-1.50515,-17.7899 0/1:27:19,8:19:764:8:315:-20.5838,0,-60.9497 dDocent_Contig_10261 22 . C T 640.118 . AB=0.433962;ABP=5.01789;AC=1;AF=0.166667;AN=6;AO=23;CIGAR=1X;DP=78;DPB=78;DPRA=4.24;EPP=52.9542;EPPR=122.441;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=0.763636;PAO=0;PQA=0;PQR=0;PRO=0;QA=902;QR=2187;RO=55;RPL=0;RPP=52.9542;RPPR=122.441;RPR=23;RUN=1;SAF=23;SAP=52.9542;SAR=0;SRF=55;SRP=122.441;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:53:30,23:30:1202:23:902:-65.5347,0,-92.5009 0/0:7:7,0:7:270:0:0:0,-2.10721,-24.6636 0/0:18:18,0:18:715:0:0:0,-5.41854,-64.6784 dDocent_Contig_10262 10 . T C 359.561 . AB=0.464286;ABP=3.32051;AC=2;AF=0.333333;AN=6;AO=13;CIGAR=1X;DP=49;DPB=49;DPRA=0.666667;EPP=31.2394;EPPR=81.1833;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=524;QR=1444;RO=36;RPL=0;RPP=31.2394;RPPR=81.1833;RPR=13;RUN=1;SAF=13;SAP=31.2394;SAR=0;SRF=36;SRP=81.1833;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:21:21,0:21:845:0:0:0,-6.32163,-76.3603 0/1:13:5,8:5:197:8:324:-25.6154,0,-14.1916 0/1:15:10,5:10:402:5:200:-13.8636,0,-32.0235 dDocent_Contig_10263 96 . A G 117.111 . AB=0.228571;ABP=25.4075;AC=2;AF=0.333333;AN=6;AO=8;CIGAR=1X;DP=38;DPB=38;DPRA=5.83333;EPP=20.3821;EPPR=68.1545;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=270;QR=1054;RO=30;RPL=8;RPP=20.3821;RPPR=68.1545;RPR=0;RUN=1;SAF=8;SAP=20.3821;SAR=0;SRF=30;SRP=68.1545;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:17:11,6:11:383:6:200:-13.21,0,-29.6869 0/0:3:3,0:3:102:0:0:0,-0.90309,-9.51604 0/1:18:16,2:16:569:2:70:-1.22886,0,-46.1239 dDocent_Contig_10264 79 . T A 438.379 . AB=0.31746;ABP=21.2438;AC=3;AF=0.5;AN=6;AO=20;CIGAR=1X;DP=63;DPB=63;DPRA=0;EPP=46.4397;EPPR=96.3836;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=58.3953;NS=3;NUMALT=1;ODDS=3.46945e-18;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=745;QR=1645;RO=43;RPL=20;RPP=46.4397;RPPR=96.3836;RPR=0;RUN=1;SAF=20;SAP=46.4397;SAR=0;SRF=43;SRP=96.3836;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:31:21,10:21:806:10:384:-25.5844,0,-63.3932 0/1:26:17,9:17:644:9:324:-21.6761,0,-50.3516 0/1:6:5,1:5:195:1:37:-1.89165,0,-16.118 dDocent_Contig_10265 10 . T C 475.061 . AB=0.25;ABP=48.6112;AC=2;AF=0.333333;AN=6;AO=25;CIGAR=1X;DP=193;DPB=193;DPRA=0;EPP=57.2971;EPPR=367.818;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=59.2321;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=0.982143;PAO=0;PQA=0;PQR=0;PRO=0;QA=1002;QR=6746;RO=168;RPL=0;RPP=57.2971;RPPR=367.818;RPR=25;RUN=1;SAF=25;SAP=57.2971;SAR=0;SRF=168;SRP=367.818;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:109:105,4:105:4199:4:162:0,-17.8453,-361.12 0/1:28:24,4:24:969:4:162:-6.53812,0,-79.0148 0/1:56:39,17:39:1578:17:678:-44.4908,0,-125.289 dDocent_Contig_10266 8 . T A 1110.05 . AB=0.0512821;ABP=71.2168;AC=0;AF=0;AN=6;AO=2;CIGAR=1M1D1M1X6M;DP=75;DPB=74.6;DPRA=0;EPP=7.35324;EPPR=74.6689;GTI=0;LEN=1;MEANALT=2;MQM=36;MQMR=60;NS=3;NUMALT=3;ODDS=0;PAIRED=0;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=72;QR=1285;RO=33;RPL=0;RPP=7.35324;RPPR=74.6689;RPR=2;RUN=1;SAF=2;SAP=7.35324;SAR=0;SRF=33;SRP=74.6689;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|0:39:16,2,0,21:16:623:2,0,21:72,0,851:-64.9631,-64.4497,-115.045,-69.7796,-115.647,-120.98,0,-45.9263,-51.2559,-44.9343 0|0:9:5,0,2,2:5:193:0,2,2:0,48,77:-4.90368,-6.40883,-22.3084,-3.31851,-19.1698,-18.5677,0,-15.976,-12.8486,-15.374 0|0:27:12,0,0,15:12:469:0,0,15:0,0,605:-46.6604,-50.2728,-88.8262,-50.2728,-88.8262,-88.8262,0,-38.9494,-38.9494,-34.4339 dDocent_Contig_10267 63 . C A 68.727 . AB=0.25;ABP=13.8677;AC=2;AF=0.333333;AN=6;AO=5;CIGAR=1X;DP=25;DPB=25;DPRA=2;EPP=13.8677;EPPR=46.4397;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=54.8;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=0.9;PAO=0;PQA=0;PQR=0;PRO=0;QA=174;QR=687;RO=20;RPL=5;RPP=13.8677;RPPR=46.4397;RPR=0;RUN=1;SAF=5;SAP=13.8677;SAR=0;SRF=20;SRP=46.4397;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:16:12,4:12:418:4:138:-7.94369,0,-33.1374 0/1:4:3,1:3:96:1:36:-2.39415,0,-3.64225 0/0:5:5,0:5:173:0:0:0,-1.50515,-15.9102 dDocent_Contig_10268 125 . A T 1394.24 . AB=0.651852;ABP=30.0492;AC=3;AF=0.5;AN=6;AO=88;CIGAR=1X;DP=135;DPB=135;DPRA=0;EPP=194.1;EPPR=105.07;GTI=0;LEN=1;MEANALT=1;MQM=29.0455;MQMR=55.2553;NS=3;NUMALT=1;ODDS=0;PAIRED=0;PAIREDR=0.382979;PAO=0;PQA=0;PQR=0;PRO=0;QA=3112;QR=1623;RO=47;RPL=0;RPP=194.1;RPPR=105.07;RPR=88;RUN=1;SAF=0;SAP=194.1;SAR=88;SRF=0;SRP=105.07;SRR=47;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:76:26,50:26:906:50:1776:-82.7967,0,-57.1918 0/1:28:13,15:13:438:15:532:-24.5428,0,-28.4522 0/1:31:8,23:8:279:23:804:-37.6077,0,-16.1169 dDocent_Contig_10269 48 . G T 129.433 . AB=0.428571;ABP=3.63072;AC=2;AF=0.333333;AN=6;AO=6;CIGAR=1X;DP=30;DPB=30;DPRA=0.4375;EPP=16.0391;EPPR=55.1256;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=221;QR=934;RO=24;RPL=0;RPP=16.0391;RPPR=55.1256;RPR=6;RUN=1;SAF=6;SAP=16.0391;SAR=0;SRF=24;SRP=55.1256;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:16:16,0:16:626:0:0:0,-4.81648,-56.6713 0/1:4:1,3:1:35:3:106:-8.68358,0,-2.29451 0/1:10:7,3:7:273:3:115:-7.71473,0,-21.926 dDocent_Contig_10270 10 . T A 130.444 . AB=0.173077;ABP=51.2838;AC=3;AF=0.5;AN=6;AO=9;CIGAR=1X;DP=52;DPB=52;DPRA=0;EPP=22.5536;EPPR=96.3836;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=367;QR=1685;RO=43;RPL=0;RPP=22.5536;RPPR=96.3836;RPR=9;RUN=1;SAF=9;SAP=22.5536;SAR=0;SRF=43;SRP=96.3836;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:34:30,4:30:1196:4:164:-4.91488,0,-97.6712 0/1:3:2,1:2:81:1:41:-3.19148,0,-6.78264 0/1:15:11,4:11:408:4:162:-10.4515,0,-32.5439 dDocent_Contig_10272 11 . G T 140.076 . AB=0.181818;ABP=41.702;AC=1;AF=0.166667;AN=6;AO=8;CIGAR=1X;DP=101;DPB=101;DPRA=1.54386;EPP=20.3821;EPPR=204.957;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=51.8387;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=0.849462;PAO=0;PQA=0;PQR=0;PRO=0;QA=319;QR=3725;RO=93;RPL=0;RPP=20.3821;RPPR=204.957;RPR=8;RUN=1;SAF=8;SAP=20.3821;SAR=0;SRF=93;SRP=204.957;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:36:36,0:36:1449:0:0:0,-10.8371,-109.903 0/1:44:36,8:36:1441:8:319:-15.8315,0,-114.533 0/0:21:21,0:21:835:0:0:0,-6.32163,-64.4685 dDocent_Contig_10274 43 . T A 734.09 . AB=0.0993789;ABP=227.454;AC=0;AF=0;AN=6;AO=16;CIGAR=2X3M1I1X2M1X1M2X;DP=161;DPB=162.333;DPRA=0;EPP=37.7539;EPPR=183.243;GTI=0;LEN=1;MEANALT=4.33333;MQM=10;MQMR=60;NS=3;NUMALT=4;ODDS=2.77556e-17;PAIRED=0;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=621;QR=3202;RO=83;RPL=0;RPP=37.7539;RPPR=183.243;RPR=16;RUN=1;SAF=16;SAP=37.7539;SAR=0;SRF=83;SRP=183.243;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|0:88:50,7,12,3,15:50:1936:7,12,3,15:277,451,120,558:-30.6381,-41.5487,-198.492,-8.71802,-163.655,-164.207,-35.7975,-190.714,-157.933,-193.978,0,-154.947,-122.161,-149.223,-154.594 0|0:24:5,7,4,2,5:5:188:7,4,2,5:271,152,81,201:-15.1009,-12.5253,-25.8152,-4.11509,-15.4592,-18.3421,-9.91281,-21.241,-12.8542,-24.7367,0,-11.3523,-2.94425,-8.74298,-13.9319 0|0:49:28,2,6,0,13:28:1078:2,6,0,13:73,234,0,506:-33.1927,-40.4533,-128.359,-22.3754,-109.726,-109.102,-41.6216,-128.961,-110.908,-130.145,0,-87.383,-69.324,-88.563,-84.6496 dDocent_Contig_10276 26 . A T 102.103 . AB=0.206897;ABP=24.6501;AC=2;AF=0.333333;AN=6;AO=6;CIGAR=1X;DP=45;DPB=45;DPRA=0.90625;EPP=16.0391;EPPR=87.6977;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=240;QR=1551;RO=39;RPL=0;RPP=16.0391;RPPR=87.6977;RPR=6;RUN=1;SAF=6;SAP=16.0391;SAR=0;SRF=39;SRP=87.6977;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:11:7,4:7:280:4:160:-11.4723,0,-22.2599 0/1:18:16,2:16:636:2:80:-2.17325,0,-52.1556 0/0:16:16,0:16:635:0:0:0,-4.81648,-57.4822 dDocent_Contig_10277 9 . T A 561.017 . AB=0.353846;ABP=15.0703;AC=3;AF=0.5;AN=6;AO=23;CIGAR=1X;DP=65;DPB=65;DPRA=0;EPP=52.9542;EPPR=94.2121;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=3.46945e-18;PAIRED=1;PAIREDR=0.857143;PAO=0;PQA=0;PQR=0;PRO=0;QA=890;QR=1616;RO=42;RPL=0;RPP=52.9542;RPPR=94.2121;RPR=23;RUN=1;SAF=23;SAP=52.9542;SAR=0;SRF=42;SRP=94.2121;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:37:24,13:24:922:13:503:-34.4807,0,-72.1582 0/1:7:3,4:3:117:4:153:-12.0344,0,-8.80317 0/1:21:15,6:15:577:6:234:-15.1095,0,-45.9494 dDocent_Contig_10278 19 . C T 52.8863 . AB=0.25;ABP=9.52472;AC=1;AF=0.166667;AN=6;AO=3;CIGAR=1X;DP=32;DPB=32;DPRA=1.2;EPP=9.52472;EPPR=65.983;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=115;QR=1165;RO=29;RPL=0;RPP=9.52472;RPPR=65.983;RPR=3;RUN=1;SAF=3;SAP=9.52472;SAR=0;SRF=29;SRP=65.983;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:11:11,0:11:443:0:0:0,-3.31133,-40.2248 0/0:9:9,0:9:356:0:0:0,-2.70927,-32.4019 0/1:12:9,3:9:366:3:115:-7.11253,0,-29.6928 dDocent_Contig_10279 18 . G T 354 . AB=0.0454545;ABP=121.454;AC=0;AF=0;AN=6;AO=3;CIGAR=1M2I1M1X2M1X1M1I3M2X;DP=90;DPB=91;DPRA=1.375;EPP=9.52472;EPPR=124.613;GTI=0;LEN=1;MEANALT=4.5;MQM=12;MQMR=60;NS=3;NUMALT=3;ODDS=0;PAIRED=0;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=115;QR=2223;RO=56;RPL=0;RPP=9.52472;RPPR=124.613;RPR=3;RUN=1;SAF=3;SAP=9.52472;SAR=0;SRF=56;SRP=124.613;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|0:44:25,1,8,6:25:991:1,8,6:36,314,235:-18.3186,-25.0803,-106.364,0,-80.8419,-79.2038,-6.50768,-87.3416,-62.2865,-86.3059 0|0:22:8,2,7,5:8:319:2,7,5:79,279,203:-20.6043,-21.4961,-47.1643,0,-24.792,-24.2039,-6.24543,-31.0222,-9.54778,-31.0409 0|0:24:23,0,0,0:23:913:0,0,0:0,0,0:0,-6.92369,-82.3112,-6.92369,-82.3112,-82.3112,-6.92369,-82.3112,-82.3112,-82.3112 dDocent_Contig_10280 12 . A G 456.946 . AB=0.434783;ABP=3.86001;AC=4;AF=0.666667;AN=6;AO=15;CIGAR=1X;DP=28;DPB=28;DPRA=0;EPP=35.5824;EPPR=31.2394;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=0.666667;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=611;QR=518;RO=13;RPL=0;RPP=35.5824;RPPR=31.2394;RPR=15;RUN=1;SAF=15;SAP=35.5824;SAR=0;SRF=13;SRP=31.2394;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:12:7,5:7:275:5:204:-15.1317,0,-21.5057 1/1:5:0,5:0:0:5:203:-18.6531,-1.50515,0 0/1:11:6,5:6:243:5:204:-15.4327,0,-18.9368 dDocent_Contig_10281 10 . T C 1671.65 . AB=0.144737;ABP=86.3263;AC=0;AF=0;AN=6;AO=11;CIGAR=1X2M2X1M1X;DP=184;DPB=184;DPRA=0;EPP=26.8965;EPPR=150.67;GTI=0;LEN=1;MEANALT=7;MQM=60;MQMR=60;NS=3;NUMALT=4;ODDS=0;PAIRED=1;PAIREDR=0.926471;PAO=0;PQA=0;PQR=0;PRO=0;QA=436;QR=2656;RO=68;RPL=0;RPP=26.8965;RPPR=150.67;RPR=11;RUN=1;SAF=11;SAP=26.8965;SAR=0;SRF=68;SRP=150.67;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|0:81:23,0,20,1,35:23:907:0,20,1,35:0,757,32,1346:-103.587,-110.511,-185.142,-48.4582,-123.089,-117.069,-107.934,-182.564,-120.512,-182.263,0,-74.6361,-12.5867,-72.0592,-64.1001 0|0:27:11,0,5,3,8:11:428:0,5,3,8:0,193,104,307:-21.8948,-25.2062,-60.3849,-9.35179,-44.5335,-43.0283,-16.7627,-51.9387,-36.0884,-51.0356,0,-35.1843,-19.3322,-26.7402,-32.776 0|0:76:34,11,6,0,18:34:1321:11,6,0,18:436,225,0,699:-47.2056,-21.5474,-126.788,-39.0128,-111.671,-145.756,-57.4406,-130.1,-147.562,-165.99,0,-72.6605,-90.1238,-108.552,-103.133 dDocent_Contig_10282 8 . T C 8078.95 . AB=0.351738;ABP=96.3747;AC=6;AF=1;AN=6;AO=172;CIGAR=1X3M;DP=489;DPB=489;DPRA=0;EPP=376.504;EPPR=137.19;GTI=0;LEN=1;MEANALT=5.33333;MQM=59.7442;MQMR=56.4455;NS=3;NUMALT=2;ODDS=0;PAIRED=0.994186;PAIREDR=0.851485;PAO=0;PQA=0;PQR=0;PRO=0;QA=6599;QR=3805;RO=101;RPL=0;RPP=376.504;RPPR=222.329;RPR=172;RUN=1;SAF=172;SAP=376.504;SAR=0;SRF=90;SRP=137.19;SRR=11;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 1|1:215:43,81,78:43:1626:81,78:3170,3021:-370.696,-123.852,-223.811,-135.461,0,-236.322 1|1:124:28,56,33:28:1029:56,33:2167,1250:-184.322,-18.3395,-85.3551,-90.5431,0,-164.483 1|1:150:30,54,61:30:1150:54,61:2097,2328:-258.401,-96.9691,-174.736,-76.4445,0,-152.104 dDocent_Contig_10283 15 . G A 1636.79 . AB=0.183333;ABP=107.531;AC=1;AF=0.166667;AN=6;AO=22;CIGAR=1X2M1X;DP=120;DPB=120;DPRA=0;EPP=50.7827;EPPR=85.5263;GTI=0;LEN=1;MEANALT=3;MQM=60;MQMR=60;NS=3;NUMALT=3;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=853;QR=1503;RO=38;RPL=0;RPP=50.7827;RPPR=85.5263;RPR=22;RUN=1;SAF=22;SAP=50.7827;SAR=0;SRF=38;SRP=85.5263;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|1:58:19,19,6,14:19:746:19,6,14:731,235,553:-54.2847,0,-55.6327,-40.6806,-42.0292,-100.229,-14.5015,-15.8516,-56.5333,-71.6426 0|0:21:6,2,1,12:6:242:2,1,12:81,41,481:-37.8179,-32.9445,-52.2914,-36.2394,-49.509,-55.8875,0,-13.267,-16.5615,-16.3339 0|0:41:13,1,2,25:13:515:1,2,25:41,82,985:-77.0994,-77.6282,-119.717,-74.2435,-113.249,-116.032,0,-38.9937,-35.6088,-34.8528 dDocent_Contig_10284 32 . G A 69.7201 . AB=0.12963;ABP=67.3502;AC=1;AF=0.166667;AN=6;AO=7;CIGAR=1X;DP=99;DPB=99;DPRA=2.4;EPP=18.2106;EPPR=202.786;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=3.46945e-18;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=271;QR=3702;RO=92;RPL=0;RPP=18.2106;RPPR=202.786;RPR=7;RUN=1;SAF=7;SAP=18.2106;SAR=0;SRF=92;SRP=202.786;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:54:47,7:47:1893:7:271:-8.49489,0,-154.312 0/0:13:13,0:13:519:0:0:0,-3.91339,-47.057 0/0:32:32,0:32:1290:0:0:0,-9.63296,-116.361 dDocent_Contig_10286 50 . G A 79.7346 . AB=0.266667;ABP=10.1038;AC=1;AF=0.166667;AN=6;AO=4;CIGAR=1X;DP=45;DPB=45;DPRA=1;EPP=11.6962;EPPR=89.8692;GTI=0;LEN=1;MEANALT=2;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=156;QR=1571;RO=40;RPL=4;RPP=11.6962;RPPR=89.8692;RPR=0;RUN=1;SAF=4;SAP=11.6962;SAR=0;SRF=40;SRP=89.8692;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:19:19,0:19:732:0:0:0,-5.71957,-66.1873 0/0:11:11,0:11:448:0:0:0,-3.31133,-40.6758 0/1:15:10,4:10:391:4:156:-9.79737,0,-30.9196 dDocent_Contig_10287 18 . T G 5470.56 . AB=0.872611;ABP=192.343;AC=4;AF=0.666667;AN=6;AO=169;CIGAR=1X;DP=189;DPB=189;DPRA=0;EPP=369.989;EPPR=46.4397;GTI=0;LEN=1;MEANALT=1;MQM=57.6331;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=0.87574;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=6733;QR=792;RO=20;RPL=0;RPP=369.989;RPPR=46.4397;RPR=169;RUN=1;SAF=169;SAP=369.989;SAR=0;SRF=20;SRP=46.4397;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:113:13,100:13:523:100:3971:-323.365,0,-13.3993 1/1:32:0,32:0:0:32:1278:-112.324,-9.63296,0 0/1:44:7,37:7:269:37:1484:-114.89,0,-11.3211 dDocent_Contig_10288 107 . N G 67.4724 . AB=0;ABP=0;AC=2;AF=0.5;AN=4;AO=2;CIGAR=1X;DP=3;DPB=3;DPRA=2;EPP=7.35324;EPPR=0;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=0;NS=2;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=66;QR=0;RO=0;RPL=0;RPP=7.35324;RPPR=0;RPR=2;RUN=1;SAF=0;SAP=7.35324;SAR=2;SRF=0;SRP=0;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 1/1:2:0,2:0:0:2:66:-6.26831,-0.60206,0 ./.:.:.:.:.:.:.:. 0/0:1:0,0:0:0:0:0:0,0,0 dDocent_Contig_10289 11 . C T 1393.69 . AB=0.196078;ABP=207.597;AC=2;AF=0.333333;AN=6;AO=50;CIGAR=1X2M1X8M2X1M1X9M;DP=255;DPB=254.88;DPRA=0;EPP=111.584;EPPR=144.156;GTI=0;LEN=1;MEANALT=17.6667;MQM=60;MQMR=60;NS=3;NUMALT=8;ODDS=0;PAIRED=1;PAIREDR=0.984615;PAO=0;PQA=0;PQR=0;PRO=0;QA=1917;QR=2522;RO=65;RPL=0;RPP=111.584;RPPR=144.156;RPR=50;RUN=1;SAF=50;SAP=111.584;SAR=0;SRF=65;SRP=144.156;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|1:131:29,16,0,8,0,36,5,0,0:29:1130:16,0,8,0,36,5,0,0:647,0,311,0,1373,192,0,0:-103.898,-59.28,-147.339,-112.628,-152.155,-205.502,-87.0717,-126.599,-179.946,-177.538,-112.628,-152.155,-205.502,-179.946,-205.502,0,-39.5268,-92.8744,-67.3186,-92.8744,-82.0373,-96.8788,-136.406,-189.753,-164.197,-189.753,-77.1257,-188.248,-112.628,-152.155,-205.502,-179.946,-205.502,-92.8744,-189.753,-205.502,-112.628,-152.155,-205.502,-179.946,-205.502,-92.8744,-189.753,-205.502,-205.502 0|1:46:8,3,4,2,6,7,3,0,4:8:318:3,4,2,6,7,3,0,4:121,160,79,225,266,116,0,116:-19.4076,-11.8387,-37.1234,-8.63191,-24.8433,-33.6158,-15.3134,-31.5244,-28.3179,-40.8988,-3.38523,-19.5965,-16.3899,-23.071,-27.7669,0,-16.2115,-13.0049,-19.6861,-7.75842,-24.081,-12.3202,-28.5313,-25.3247,-32.0057,-20.0779,-16.693,-37.6046,-21.8158,-38.0265,-34.82,-41.5008,-29.5731,-26.1883,-38.5077,-48.0027,-13.6755,-29.8848,-26.6786,-33.359,-21.4326,-18.048,-30.3662,-39.8604,-38.6563 0|0:78:28,9,2,3,1,7,3,4,0:28:1074:9,2,3,1,7,3,4,0:364,76,120,38,278,116,152,0:-21.5869,0,-85.4368,-23.7834,-81.9136,-111.325,-20.1295,-78.2599,-102.042,-107.371,-26.8993,-85.0295,-108.811,-105.158,-114.742,-7.12636,-65.257,-89.039,-85.3854,-92.1549,-93.1642,-20.4873,-78.6175,-102.399,-98.7456,-105.515,-85.7429,-107.728,-17.5503,-75.6803,-99.4619,-95.8084,-102.578,-82.8057,-96.1659,-104.49,-30.0158,-88.146,-111.928,-108.274,-115.043,-95.2714,-108.632,-105.694,-118.16 dDocent_Contig_10290 19 . T C 161.461 . AB=0.192308;ABP=45.7716;AC=2;AF=0.333333;AN=6;AO=10;CIGAR=1X;DP=105;DPB=105;DPRA=0.490566;EPP=24.725;EPPR=209.3;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=57.8316;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=0.936842;PAO=0;PQA=0;PQR=0;PRO=0;QA=384;QR=3696;RO=95;RPL=0;RPP=24.725;RPPR=209.3;RPR=10;RUN=1;SAF=10;SAP=24.725;SAR=0;SRF=95;SRP=209.3;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:53:53,0:53:2076:0:0:0,-15.9546,-179.455 0/1:14:12,2:12:450:2:70:-2.43233,0,-36.6276 0/1:38:30,8:30:1170:8:314:-17.1862,0,-94.1561 dDocent_Contig_10291 9 . T A 1028.31 . AB=0.411111;ABP=9.18693;AC=3;AF=0.5;AN=6;AO=37;CIGAR=1X4M;DP=121;DPB=121.8;DPRA=0;EPP=83.3548;EPPR=152.842;GTI=0;LEN=1;MEANALT=2;MQM=59.8108;MQMR=60;NS=3;NUMALT=2;ODDS=0;PAIRED=0.297297;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=1410;QR=2696;RO=69;RPL=0;RPP=83.3548;RPPR=152.842;RPR=37;RUN=1;SAF=37;SAP=83.3548;SAR=0;SRF=69;SRP=152.842;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|1:74:39,7,27:39:1515:7,27:266,1025:-72.3099,-62.2363,-184.614,0,-102.671,-116.356 0|1:16:6,0,10:6:238:0,10:0,385:-30.1773,-31.9835,-51.58,0,-19.9883,-16.978 0|1:31:24,4,0:24:943:4,0:159,0:-5.86687,0,-76.356,-13.0916,-77.5601,-90.6517 dDocent_Contig_10292 62 . G A 405.732 . AB=0.3;ABP=23.8564;AC=2;AF=0.5;AN=4;AO=18;CIGAR=1X;DP=60;DPB=60;DPRA=0;EPP=42.0968;EPPR=94.2121;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=2;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=685;QR=1576;RO=42;RPL=18;RPP=42.0968;RPPR=94.2121;RPR=0;RUN=1;SAF=18;SAP=42.0968;SAR=0;SRF=42;SRP=94.2121;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:49:34,15:34:1269:15:581:-37.882,0,-99.7472 ./.:.:.:.:.:.:.:. 0/1:11:8,3:8:307:3:104:-6.3902,0,-24.6801 dDocent_Contig_10294 98 . N A 577.465 . AB=0;ABP=0;AC=6;AF=1;AN=6;AO=18;CIGAR=1X;DP=18;DPB=18;DPRA=0;EPP=42.0968;EPPR=0;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=0;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=625;QR=0;RO=0;RPL=18;RPP=42.0968;RPPR=0;RPR=0;RUN=1;SAF=18;SAP=42.0968;SAR=0;SRF=0;SRP=0;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 1/1:4:0,4:0:0:4:140:-12.9449,-1.20412,0 1/1:4:0,4:0:0:4:137:-12.6682,-1.20412,0 1/1:10:0,10:0:0:10:348:-31.656,-3.0103,0 dDocent_Contig_10295 33 . T A 83.7293 . AB=0.75;ABP=5.18177;AC=1;AF=0.166667;AN=6;AO=3;CIGAR=1X;DP=17;DPB=17;DPRA=0.615385;EPP=9.52472;EPPR=33.4109;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=122;QR=562;RO=14;RPL=0;RPP=9.52472;RPPR=33.4109;RPR=3;RUN=1;SAF=3;SAP=9.52472;SAR=0;SRF=14;SRP=33.4109;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:7:7,0:7:280:0:0:0,-2.10721,-25.5716 0/0:6:6,0:6:243:0:0:0,-1.80618,-22.2482 0/1:4:1,3:1:39:3:122:-10.1684,0,-2.69244 dDocent_Contig_10296 11 . C T 176.251 . AB=0.230769;ABP=27.5646;AC=2;AF=0.333333;AN=6;AO=12;CIGAR=2X;DP=86;DPB=86;DPRA=0;EPP=29.068;EPPR=163.699;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=477;QR=2956;RO=74;RPL=0;RPP=29.068;RPPR=163.699;RPR=12;RUN=1;SAF=12;SAP=29.068;SAR=0;SRF=74;SRP=163.699;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|0:47:44,3:44:1748:3:120:0,-2.96072,-146.356 0|1:5:3,2:3:121:2:80:-6.08664,0,-9.77484 0|1:34:27,7:27:1087:7:277:-15.0613,0,-87.8821 dDocent_Contig_10297 107 . N A 95.1749 . AB=0;ABP=0;AC=2;AF=1;AN=2;AO=3;CIGAR=1X;DP=3;DPB=3;DPRA=0;EPP=9.52472;EPPR=0;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=0;NS=1;NUMALT=1;ODDS=6.68461;PAIRED=1;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=102;QR=0;RO=0;RPL=0;RPP=9.52472;RPPR=0;RPR=3;RUN=1;SAF=0;SAP=9.52472;SAR=3;SRF=0;SRP=0;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 1/1:3:0,3:0:0:3:102:-9.51695,-0.90309,0 ./.:.:.:.:.:.:.:. ./.:.:.:.:.:.:.:. dDocent_Contig_10298 60 . A C 147.499 . AB=0.0978261;ABP=132.26;AC=1;AF=0.166667;AN=6;AO=9;CIGAR=1X1M2X1M;DP=122;DPB=122;DPRA=0;EPP=22.5536;EPPR=196.271;GTI=0;LEN=1;MEANALT=3;MQM=59.7778;MQMR=60;NS=3;NUMALT=3;ODDS=0;PAIRED=0;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=310;QR=3295;RO=89;RPL=9;RPP=22.5536;RPPR=196.271;RPR=0;RUN=1;SAF=9;SAP=22.5536;SAR=0;SRF=89;SRP=196.271;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|0:92:70,3,9,10:70:2588:3,9,10:115,310,331:-5.67959,-17.3065,-228.101,-1.58195,-203.837,-210.567,0,-202.246,-186.519,-208.675 0|0:12:10,1,0,1:10:364:1,0,1:38,0,39:-0.200678,-0.101997,-29.5025,-3.21098,-29.8035,-32.9187,0,-26.5953,-29.7108,-29.4097 0|1:18:9,5,0,4:9:343:5,0,4:187,0,140:-12.5853,0,-26.6521,-15.2946,-28.1572,-43.4394,-3.91682,-16.7786,-32.0575,-30.8534 dDocent_Contig_10299 7 . C T 13315.6 . AB=0.776199;ABP=376.06;AC=3;AF=0.5;AN=6;AO=437;CIGAR=1X3M;DP=563;DPB=563.5;DPRA=0;EPP=934.651;EPPR=176.728;GTI=0;LEN=1;MEANALT=4.33333;MQM=59.2037;MQMR=60;NS=3;NUMALT=2;ODDS=0;PAIRED=0.549199;PAIREDR=0.625;PAO=0;PQA=0;PQR=0;PRO=0;QA=16626;QR=3071;RO=80;RPL=0;RPP=951.944;RPPR=176.728;RPR=437;RUN=1;SAF=435;SAP=934.651;SAR=2;SRF=80;SRP=176.728;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|1:296:34,17,229:34:1311:17,229:652,8701:-701.256,-657.975,-760.515,0,-54.1432,-38.7225 0|1:90:22,1,61:22:840:1,61:39,2327:-183.907,-187.323,-255.939,0,-65.7115,-50.5549 0|1:177:24,3,147:24:920:3,147:117,5598:-451.921,-449.527,-524.134,0,-65.8861,-31.253 dDocent_Contig_10300 9 . T G 1080.8 . AB=0.644068;ABP=13.6468;AC=3;AF=0.5;AN=6;AO=38;CIGAR=1M1D2M1X;DP=59;DPB=51.4;DPRA=0;EPP=85.5263;EPPR=48.6112;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=0.973684;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=1448;QR=793;RO=21;RPL=0;RPP=85.5263;RPPR=48.6112;RPR=38;RUN=1;SAF=38;SAP=85.5263;SAR=0;SRF=21;SRP=48.6112;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|1:22:4,18:4:153:18:686:-55.4504,0,-7.51908 0|1:16:11,5:11:417:5:191:-12.7419,0,-33.0655 0|1:21:6,15:6:223:15:571:-45.4103,0,-14.1052 dDocent_Contig_10301 18 . T C 2680.86 . AB=0.653846;ABP=29.7361;AC=4;AF=0.666667;AN=6;AO=85;CIGAR=1X4M;DP=130;DPB=130;DPRA=0;EPP=187.585;EPPR=61.6401;GTI=0;LEN=1;MEANALT=2;MQM=59.9529;MQMR=60;NS=3;NUMALT=2;ODDS=1.38778e-17;PAIRED=0.988235;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=3413;QR=1065;RO=27;RPL=0;RPP=187.585;RPPR=61.6401;RPR=85;RUN=1;SAF=85;SAP=187.585;SAR=0;SRF=27;SRP=61.6401;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|1:91:18,10,63:18:718:10,63:398,2519:-202.057,-174.703,-230.823,0,-26.3594,-40.1664 0|1:6:2,1,3:2:80:1,3:38,120:-9.29748,-6.78798,-13.0769,0,-3.49328,-5.70009 1|1:33:7,7,19:7:267:7,19:272,774:-62.2069,-41.9696,-61.7563,-0.455809,0,-16.6335 dDocent_Contig_10302 14 . C T 1302.44 . AB=0.335443;ABP=40.1727;AC=3;AF=0.5;AN=6;AO=53;CIGAR=1X;DP=158;DPB=158;DPRA=0;EPP=118.098;EPPR=231.015;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=2026;QR=4207;RO=105;RPL=0;RPP=118.098;RPPR=231.015;RPR=53;RUN=1;SAF=53;SAP=118.098;SAR=0;SRF=105;SRP=231.015;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:83:50,33:50:1989:33:1260:-88.6941,0,-154.217 0/1:38:30,8:30:1213:8:310:-16.8237,0,-98.0035 0/1:37:25,12:25:1005:12:456:-30.249,0,-79.6051 dDocent_Contig_10303 105 . N A 88.9846 . AB=0;ABP=0;AC=2;AF=1;AN=2;AO=3;CIGAR=3X;DP=3;DPB=25.6667;DPRA=0;EPP=9.52472;EPPR=0;GTI=0;LEN=1;MEANALT=1;MQM=35.3333;MQMR=0;NS=1;NUMALT=1;ODDS=6.68461;PAIRED=0.333333;PAIREDR=0;PAO=33;PQA=1060;PQR=0;PRO=0;QA=110;QR=0;RO=0;RPL=0;RPP=9.52472;RPPR=0;RPR=3;RUN=1;SAF=3;SAP=9.52472;SAR=0;SRF=0;SRP=0;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 1|1:3:0,3:0:0:3:110:-8.89792,-0.90309,0 .:.:.:.:.:.:.:. .:.:.:.:.:.:.:. dDocent_Contig_10304 14 . T A 172.454 . AB=0.285714;ABP=14.1779;AC=2;AF=0.333333;AN=6;AO=8;CIGAR=1X;DP=32;DPB=32;DPRA=3.5;EPP=20.3821;EPPR=55.1256;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=0.916667;PAO=0;PQA=0;PQR=0;PRO=0;QA=316;QR=974;RO=24;RPL=0;RPP=20.3821;RPPR=55.1256;RPR=8;RUN=1;SAF=8;SAP=20.3821;SAR=0;SRF=24;SRP=55.1256;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:13:9,4:9:365:4:164:-11.2365,0,-29.3006 0/1:15:11,4:11:451:4:152:-9.53171,0,-36.4302 0/0:4:4,0:4:158:0:0:0,-1.20412,-14.5998 dDocent_Contig_10305 24 . A T 179.19 . AB=0.296296;ABP=12.7417;AC=2;AF=0.333333;AN=6;AO=8;CIGAR=1X;DP=47;DPB=47;DPRA=0.675;EPP=20.3821;EPPR=87.6977;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=320;QR=1569;RO=39;RPL=0;RPP=20.3821;RPPR=87.6977;RPR=8;RUN=1;SAF=8;SAP=20.3821;SAR=0;SRF=39;SRP=87.6977;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:20:20,0:20:814:0:0:0,-6.0206,-73.5739 0/1:8:3,5:3:121:5:197:-15.6967,0,-8.87196 0/1:19:16,3:16:634:3:123:-5.74522,0,-51.6731 dDocent_Contig_10306 47 . A C 169.899 . AB=0.258065;ABP=18.771;AC=2;AF=0.333333;AN=6;AO=8;CIGAR=1X;DP=37;DPB=37;DPRA=2.58333;EPP=20.3821;EPPR=65.983;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=323;QR=1149;RO=29;RPL=0;RPP=20.3821;RPPR=65.983;RPR=8;RUN=1;SAF=8;SAP=20.3821;SAR=0;SRF=29;SRP=65.983;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:23:18,5:18:703:5:200:-11.4562,0,-56.6692 0/0:6:6,0:6:244:0:0:0,-1.80618,-22.3388 0/1:8:5,3:5:202:3:123:-9.05655,0,-16.1538 dDocent_Contig_10307 68 . T A 63.722 . AB=0.235294;ABP=13.3567;AC=1;AF=0.166667;AN=6;AO=7;CIGAR=1X;DP=84;DPB=84;DPRA=2.3;EPP=18.2106;EPPR=170.214;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=224;QR=2769;RO=77;RPL=7;RPP=18.2106;RPPR=170.214;RPR=0;RUN=1;SAF=7;SAP=18.2106;SAR=0;SRF=77;SRP=170.214;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:52:49,3:49:1786:3:80:0,-8.1891,-153.552 0/0:15:15,0:15:547:0:0:0,-4.51545,-49.56 0/1:17:13,4:13:436:4:144:-8.19611,0,-34.4413 dDocent_Contig_10309 142 . C T 236.161 . AB=0.479167;ABP=3.19126;AC=3;AF=0.5;AN=6;AO=59;CIGAR=1X4M;DP=116;DPB=116;DPRA=0;EPP=131.127;EPPR=78.5398;GTI=0;LEN=1;MEANALT=4;MQM=15.322;MQMR=34.8478;NS=3;NUMALT=2;ODDS=0;PAIRED=0.0169492;PAIREDR=0.326087;PAO=0;PQA=0;PQR=0;PRO=0;QA=723;QR=1792;RO=46;RPL=0;RPP=131.127;RPPR=102.898;RPR=59;RUN=1;SAF=0;SAP=131.127;SAR=59;SRF=3;SRP=78.5398;SRR=43;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|1:48:23,0,23:23:892:0,23:0,275:-6.95613,-13.8798,-64.4988,0,-50.5392,-43.6155 1|1:28:3,3,19:3:119:3,19:116,315:-18.1818,-18.6506,-23.3164,-0.123629,-5.33017,0 0|0:40:20,1,17:20:781:1,17:40,133:0,-5.87201,-50.2666,-2.61937,-47.2564,-42.2786 dDocent_Contig_10310 141 . G A 34.8472 . AB=0.285714;ABP=5.80219;AC=1;AF=0.25;AN=4;AO=4;CIGAR=1X;DP=48;DPB=48;DPRA=0;EPP=11.6962;EPPR=98.5551;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=2;NUMALT=1;ODDS=0;PAIRED=0;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=157;QR=1768;RO=44;RPL=0;RPP=11.6962;RPPR=98.5551;RPR=4;RUN=1;SAF=0;SAP=11.6962;SAR=4;SRF=0;SRP=98.5551;SRR=44;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:41:39,2:39:1565:2:77:0,-5.03403,-133.777 ./.:.:.:.:.:.:.:. 0/1:7:5,2:5:203:2:80:-5.48458,0,-16.5456 dDocent_Contig_10311 179 . G A 43.1033 . AB=0.666667;ABP=3.73412;AC=1;AF=0.166667;AN=6;AO=3;CIGAR=1X;DP=44;DPB=44;DPRA=1.7;EPP=9.52472;EPPR=92.0407;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=115;QR=1632;RO=41;RPL=3;RPP=9.52472;RPPR=92.0407;RPR=0;RUN=1;SAF=0;SAP=9.52472;SAR=3;SRF=0;SRP=92.0407;SRR=41;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:31:30,1:30:1199:1:41:0,-5.23736,-104.094 0/1:3:1,2:1:40:2:74:-6.12268,0,-3.09259 0/0:10:10,0:10:393:0:0:0,-3.0103,-35.725 dDocent_Contig_10312 10 . T C 492.576 . AB=0.5;ABP=3.0103;AC=2;AF=0.333333;AN=6;AO=17;CIGAR=1X;DP=39;DPB=39;DPRA=3.4;EPP=39.9253;EPPR=50.7827;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=59.9545;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=692;QR=891;RO=22;RPL=0;RPP=39.9253;RPPR=50.7827;RPR=17;RUN=1;SAF=17;SAP=39.9253;SAR=0;SRF=22;SRP=50.7827;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:18:8,10:8:324:10:406:-31.4821,0,-24.1096 0/0:5:5,0:5:204:0:0:0,-1.50515,-18.744 0/1:16:9,7:9:363:7:286:-21.2983,0,-28.2176 dDocent_Contig_10313 27 . A G 760.136 . AB=0.22561;ABP=110.26;AC=3;AF=0.5;AN=6;AO=37;CIGAR=1X;DP=164;DPB=164;DPRA=0;EPP=74.9036;EPPR=261.689;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=0.945946;PAIREDR=0.952756;PAO=0;PQA=0;PQR=0;PRO=0;QA=1443;QR=5002;RO=127;RPL=0;RPP=83.3548;RPPR=278.787;RPR=37;RUN=1;SAF=36;SAP=74.9036;SAR=1;SRF=125;SRP=261.689;SRR=2;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:62:52,10:52:2089:10:405:-18.1466,0,-169.528 0/1:17:11,6:11:403:6:236:-16.4945,0,-31.4802 0/1:85:64,21:64:2510:21:802:-46.8954,0,-200.454 dDocent_Contig_10314 30 . T C 1973.9 . AB=0.791045;ABP=52.306;AC=4;AF=0.666667;AN=6;AO=60;CIGAR=1X;DP=74;DPB=74;DPRA=0;EPP=133.299;EPPR=33.4109;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=3.46945e-18;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=2446;QR=562;RO=14;RPL=0;RPP=133.299;RPPR=33.4109;RPR=60;RUN=1;SAF=60;SAP=133.299;SAR=0;SRF=14;SRP=33.4109;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:38:6,32:6:235:32:1303:-106.089,0,-10.0796 1/1:7:0,7:0:0:7:286:-26.1148,-2.10721,0 0/1:29:8,21:8:327:21:857:-68.7088,0,-21.0702 dDocent_Contig_10315 7 . C A 2059.97 . AB=0.0877193;ABP=171.318;AC=1;AF=0.166667;AN=6;AO=10;CIGAR=1X3M2X6M;DP=114;DPB=114.083;DPRA=0;EPP=24.725;EPPR=55.1256;GTI=0;LEN=1;MEANALT=3.66667;MQM=60;MQMR=60;NS=3;NUMALT=6;ODDS=0;PAIRED=0;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=383;QR=939;RO=24;RPL=0;RPP=24.725;RPPR=55.1256;RPR=10;RUN=1;SAF=10;SAP=24.725;SAR=0;SRF=24;SRP=55.1256;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|0:57:13,5,3,0,0,36,0:13:507:5,3,0,0,36,0:197,117,0,0,1417,0:-112.633,-100.338,-140.507,-106.929,-132.395,-147.7,-116.546,-142.012,-148.603,-158.22,-116.546,-142.012,-148.603,-158.22,-158.22,0,-25.4645,-32.0559,-41.6732,-41.6732,-30.8361,-116.546,-142.012,-148.603,-158.22,-158.22,-41.6732,-158.22 1|0:24:3,1,5,4,0,9,2:3:118:1,5,4,0,9,2:40,190,157,0,362,81:-34.8061,-32.4138,-41.8195,-20.132,-26.5428,-28.3329,-23.1685,-29.5795,-17.2986,-31.6707,-35.7092,-42.1205,-29.838,-32.8748,-45.4159,-5.86939,-12.2815,0,-3.0362,-15.5774,-12.8681,-29.0288,-35.4402,-23.1579,-26.1946,-38.7357,-8.89564,-38.1336 0|0:33:8,0,2,0,3,20,0:8:314:0,2,0,3,20,0:0,76,0,99,806,0:-64.0806,-66.4889,-92.315,-60.2567,-86.0828,-85.4807,-66.4889,-92.315,-86.0828,-92.315,-59.3065,-85.1296,-78.898,-85.1296,-84.2265,0,-25.8624,-19.6275,-25.8624,-18.6887,-19.8418,-66.4889,-92.315,-86.0828,-92.315,-85.1296,-25.8624,-92.315 dDocent_Contig_10317 50 . T G 803.083 . AB=0.621622;ABP=7.76406;AC=4;AF=0.666667;AN=6;AO=26;CIGAR=1X;DP=40;DPB=40;DPRA=0;EPP=59.4686;EPPR=33.4109;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=1043;QR=554;RO=14;RPL=26;RPP=59.4686;RPPR=33.4109;RPR=0;RUN=1;SAF=26;SAP=59.4686;SAR=0;SRF=14;SRP=33.4109;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:21:7,14:7:272:14:560:-44.4205,0,-18.5202 1/1:3:0,3:0:0:3:123:-11.4648,-0.90309,0 0/1:16:7,9:7:282:9:360:-27.9457,0,-20.9365 dDocent_Contig_10319 16 . C G 722.615 . AB=0.287356;ABP=37.1798;AC=4;AF=0.666667;AN=6;AO=25;CIGAR=6M1X6M1X;DP=87;DPB=90.2143;DPRA=0;EPP=57.2971;EPPR=63.8115;GTI=0;LEN=1;MEANALT=4.33333;MQM=60;MQMR=60;NS=3;NUMALT=3;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=974;QR=1081;RO=28;RPL=0;RPP=57.2971;RPPR=63.8115;RPR=25;RUN=1;SAF=25;SAP=57.2971;SAR=0;SRF=28;SRP=63.8115;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|1:68:22,7,12,18:22:849:7,12,18:255,469,698:-50.7253,-36.5231,-104.133,-18.8055,-67.6981,-84.9117,0,-48.8928,-31.1757,-64.2997 1|1:8:0,2,0,5:0:0:2,0,5:74,0,196:-22.1509,-16.1031,-15.501,-22.1509,-16.1031,-22.1509,-6.02758,0,-6.02758,-4.52243 0|1:11:6,0,2,2:6:232:0,2,2:0,80,80:-4.78266,-6.58884,-25.6364,0,-19.0448,-18.4428,0,-19.0448,-12.4525,-18.4428 dDocent_Contig_10320 21 . G A 54.2083 . AB=0.0850059;ABP=1270.02;AC=1;AF=0.166667;AN=6;AO=133;CIGAR=1X;DP=1652;DPB=1652;DPRA=0;EPP=291.816;EPPR=3242.85;GTI=0;LEN=1;MEANALT=2;MQM=59.9624;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=0.991957;PAO=0;PQA=0;PQR=0;PRO=0;QA=5239;QR=59204;RO=1492;RPL=0;RPP=291.816;RPPR=3242.85;RPR=133;RUN=1;SAF=133;SAP=291.816;SAR=0;SRF=1492;SRP=3242.85;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:847:759,72:759:30081:72:2860:-6.94371,0,-2454.05 0/0:236:219,17:219:8660:17:661:0,-11.2273,-719.097 0/0:569:514,44:514:20463:44:1718:0,-13.5283,-1685.1 dDocent_Contig_10321 31 . G T 875.71 . AB=0.450704;ABP=4.50892;AC=3;AF=0.5;AN=6;AO=32;CIGAR=1X;DP=71;DPB=71;DPRA=0;EPP=72.4974;EPPR=87.6977;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=0.96875;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=1260;QR=1565;RO=39;RPL=0;RPP=72.4974;RPPR=87.6977;RPR=32;RUN=1;SAF=32;SAP=72.4974;SAR=0;SRF=39;SRP=87.6977;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:32:26,6:26:1041:6:235:-11.8869,0,-84.3497 0/1:24:7,17:7:283:17:665:-52.9583,0,-18.6178 0/1:15:6,9:6:241:9:360:-28.2487,0,-17.5512 dDocent_Contig_10322 32 . G T 37.4127 . AB=0.122449;ABP=63.6786;AC=2;AF=0.333333;AN=6;AO=6;CIGAR=1X;DP=107;DPB=107;DPRA=0.422414;EPP=16.0391;EPPR=222.329;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=236;QR=3981;RO=101;RPL=0;RPP=16.0391;RPPR=222.329;RPR=6;RUN=1;SAF=6;SAP=16.0391;SAR=0;SRF=101;SRP=222.329;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:58:58,0:58:2268:0:0:0,-17.4597,-204.293 0/1:14:12,2:12:478:2:79:-3.28321,0,-39.1566 0/1:35:31,4:31:1235:4:157:-3.97187,0,-100.889 dDocent_Contig_10323 57 . G A 34.4497 . AB=0.125;ABP=42.0968;AC=1;AF=0.166667;AN=6;AO=5;CIGAR=1X;DP=50;DPB=50;DPRA=24.5;EPP=13.8677;EPPR=100.727;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=3.46945e-18;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=198;QR=1764;RO=45;RPL=5;RPP=13.8677;RPPR=100.727;RPR=0;RUN=1;SAF=5;SAP=13.8677;SAR=0;SRF=45;SRP=100.727;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:32:28,4:28:1095:4:158:-4.9668,0,-89.2048 0/0:1:1,0:1:34:0:0:0,-0.30103,-3.39891 0/0:17:16,1:16:635:1:40:0,-1.12183,-53.4902 dDocent_Contig_10324 124 . T A 31.8356 . AB=0.173913;ABP=24.253;AC=2;AF=0.333333;AN=6;AO=5;CIGAR=1X3M1X;DP=57;DPB=57;DPRA=0;EPP=13.8677;EPPR=115.927;GTI=0;LEN=1;MEANALT=1;MQM=52.8;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=0;PAIREDR=0.346154;PAO=0;PQA=0;PQR=0;PRO=0;QA=178;QR=1966;RO=52;RPL=0;RPP=13.8677;RPPR=115.927;RPR=5;RUN=1;SAF=0;SAP=13.8677;SAR=5;SRF=0;SRP=115.927;SRR=52;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|0:34:33,1:33:1250:1:34:0,-6.89889,-109.452 0|1:6:5,1:5:188:1:35:-1.69245,0,-15.4783 0|1:17:14,3:14:528:3:109:-4.94116,0,-42.745 dDocent_Contig_10325 84 . T C 174.516 . AB=0.294118;ABP=15.5282;AC=1;AF=0.25;AN=4;AO=10;CIGAR=1X1M1X;DP=40;DPB=40;DPRA=5.66667;EPP=24.725;EPPR=68.1545;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=2;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=323;QR=996;RO=30;RPL=10;RPP=24.725;RPPR=68.1545;RPR=0;RUN=1;SAF=10;SAP=24.725;SAR=0;SRF=30;SRP=68.1545;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|1:34:24,10:24:795:10:323:-19.1505,0,-61.6236 .:.:.:.:.:.:.:. 0|0:6:6,0:6:201:0:0:0,-1.80618,-18.4193 dDocent_Contig_10326 16 . G A 8281.96 . AB=0.778351;ABP=133.567;AC=5;AF=0.833334;AN=6;AO=244;CIGAR=1X4M;DP=293;DPB=293;DPRA=0;EPP=532.85;EPPR=42.0968;GTI=0;LEN=1;MEANALT=3.33333;MQM=60;MQMR=60;NS=3;NUMALT=2;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=9644;QR=684;RO=18;RPL=0;RPP=532.85;RPPR=42.0968;RPR=244;RUN=1;SAF=244;SAP=532.85;SAR=0;SRF=18;SRP=42.0968;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 1|1:154:10,17,120:10:372:17,120:641,4764:-411.239,-361.726,-387.051,-22.0808,0,-16.3979 0|1:40:6,3,31:6:233:3,31:119,1208:-97.4662,-89.4757,-107.718,0,-9.34143,-9.8083 1|1:99:2,3,93:2:79:3,93:120,3672:-323.013,-313.73,-319.328,-21.4965,-18.1089,0 dDocent_Contig_10327 16 . A G 387.542 . AB=0.764706;ABP=13.3567;AC=1;AF=0.166667;AN=6;AO=13;CIGAR=1X;DP=52;DPB=52;DPRA=0.971429;EPP=31.2394;EPPR=87.6977;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=1.73472e-18;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=504;QR=1573;RO=39;RPL=0;RPP=31.2394;RPPR=87.6977;RPR=13;RUN=1;SAF=13;SAP=31.2394;SAR=0;SRF=39;SRP=87.6977;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:23:23,0:23:930:0:0:0,-6.92369,-84.0016 0/1:17:4,13:4:159:13:504:-40.5781,0,-9.57393 0/0:12:12,0:12:484:0:0:0,-3.61236,-43.9105 dDocent_Contig_10328 137 . C G 2409.17 . AB=0.853933;ABP=99.8482;AC=3;AF=0.5;AN=6;AO=76;CIGAR=1X;DP=89;DPB=89;DPRA=0;EPP=168.042;EPPR=31.2394;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=6.93889e-18;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=3026;QR=503;RO=13;RPL=0;RPP=168.042;RPPR=31.2394;RPR=76;RUN=1;SAF=0;SAP=168.042;SAR=76;SRF=0;SRP=31.2394;SRR=13;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:47:5,42:5:192:42:1660:-135.479,0,-3.49957 0/1:6:2,4:2:81:4:160:-12.9772,0,-5.87955 0/1:36:6,30:6:230:30:1206:-97.979,0,-10.2222 dDocent_Contig_10329 12 . A G 1786.61 . AB=0.0819672;ABP=95.6005;AC=0;AF=0;AN=6;AO=5;CIGAR=1X3M1X2M1X4M;DP=354;DPB=353.667;DPRA=0;EPP=3.44459;EPPR=274.444;GTI=0;LEN=1;MEANALT=14;MQM=17.2;MQMR=60;NS=3;NUMALT=6;ODDS=0;PAIRED=0;PAIREDR=0.976;PAO=0;PQA=0;PQR=0;PRO=0;QA=86;QR=4888;RO=125;RPL=0;RPP=13.8677;RPPR=274.444;RPR=5;RUN=1;SAF=3;SAP=3.44459;SAR=2;SRF=125;SRP=274.444;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|0:175:83,0,1,7,29,4,8:83:3254:0,1,7,29,4,8:0,40,272,947,161,327:-46.2691,-71.2546,-338.88,-68.2258,-335.852,-335.551,-52.9179,-320.546,-317.518,-318.439,0,-267.634,-264.606,-249.3,-258.904,-58.7829,-326.411,-323.383,-308.077,-255.165,-325.207,-44.2611,-311.893,-308.865,-293.559,-240.647,-299.424,-309.485 0|0:61:14,5,6,5,9,9,1:14:536:5,6,5,9,9,1:86,237,203,323,328,41:-21.6194,-20.9521,-63.4484,-7.51195,-46.6382,-49.7151,-19.2628,-58.3837,-44.9496,-61.7602,0,-39.1294,-25.6929,-37.4406,-41.3023,-0.646659,-39.7757,-26.3392,-38.0869,-18.8288,-41.9485,-22.4472,-61.568,-48.1353,-59.8797,-40.6255,-41.2716,-66.1511 0|0:118:28,0,0,9,43,8,11:28:1098:0,0,9,43,8,11:0,0,359,1584,233,445:-116.264,-124.692,-215,-124.692,-215,-215,-109.618,-199.924,-199.924,-197.214,0,-90.3249,-90.3249,-75.254,-77.3806,-108.259,-198.566,-198.566,-183.49,-73.8935,-196.157,-88.8656,-179.177,-179.177,-164.101,-54.4972,-162.743,-175.866 dDocent_Contig_10331 7 . C T 1284.26 . AB=0.489583;ABP=3.10078;AC=3;AF=0.5;AN=6;AO=47;CIGAR=1X;DP=96;DPB=96;DPRA=0;EPP=105.07;EPPR=109.412;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=1795;QR=1896;RO=49;RPL=0;RPP=105.07;RPPR=109.412;RPR=47;RUN=1;SAF=47;SAP=105.07;SAR=0;SRF=49;SRP=109.412;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:70:37,33:37:1431:33:1268:-93.3395,0,-107.997 0/1:7:1,6:1:39:6:218:-17.8641,0,-1.78935 0/1:19:11,8:11:426:8:309:-22.4534,0,-32.9751 dDocent_Contig_10332 9 . T C 144.096 . AB=0;ABP=0;AC=2;AF=0.333333;AN=6;AO=4;CIGAR=1X;DP=28;DPB=28;DPRA=0.333333;EPP=11.6962;EPPR=55.1256;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=154;QR=923;RO=24;RPL=0;RPP=11.6962;RPPR=55.1256;RPR=4;RUN=1;SAF=4;SAP=11.6962;SAR=0;SRF=24;SRP=55.1256;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:8:8,0:8:310:0:0:0,-2.40824,-28.2637 1/1:4:0,4:0:0:4:154:-14.2335,-1.20412,0 0/0:16:16,0:16:613:0:0:0,-4.81648,-55.5086 dDocent_Contig_10334 21 . C T 44.544 . AB=0.5;ABP=3.0103;AC=1;AF=0.166667;AN=6;AO=2;CIGAR=1X;DP=31;DPB=31;DPRA=0.296296;EPP=3.0103;EPPR=65.983;GTI=0;LEN=1;MEANALT=1;MQM=55.5;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=0;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=79;QR=1168;RO=29;RPL=2;RPP=7.35324;RPPR=65.983;RPR=0;RUN=1;SAF=1;SAP=3.0103;SAR=1;SRF=29;SRP=65.983;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:16:16,0:16:652:0:0:0,-4.81648,-59.0125 0/1:4:2,2:2:81:2:79:-6.27829,0,-6.48161 0/0:11:11,0:11:435:0:0:0,-3.31133,-39.5011 dDocent_Contig_10335 18 . G A 2060.41 . AB=0.775281;ABP=61.5913;AC=3;AF=0.5;AN=6;AO=69;CIGAR=1X2M1X;DP=89;DPB=89;DPRA=0;EPP=152.842;EPPR=44.2683;GTI=0;LEN=1;MEANALT=1.33333;MQM=59.6957;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=0.927536;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=2639;QR=750;RO=19;RPL=0;RPP=152.842;RPPR=44.2683;RPR=69;RUN=1;SAF=69;SAP=152.842;SAR=0;SRF=19;SRP=44.2683;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|1:31:8,23:8:316:23:883:-70.4273,0,-19.4746 0|1:28:3,24:3:121:24:918:-74.4069,0,-2.75199 0|1:30:8,22:8:313:22:838:-66.7048,0,-19.5024 dDocent_Contig_10336 147 . T C 175.155 . AB=0.265306;ABP=26.4533;AC=3;AF=0.5;AN=6;AO=13;CIGAR=1X;DP=49;DPB=49;DPRA=0;EPP=31.2394;EPPR=81.1833;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=3.46945e-18;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=409;QR=1272;RO=36;RPL=0;RPP=31.2394;RPPR=81.1833;RPR=13;RUN=1;SAF=0;SAP=31.2394;SAR=13;SRF=0;SRP=81.1833;SRR=36;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:28:24,4:24:855:4:119:-2.57485,0,-68.8425 0/1:7:4,3:4:137:3:105:-7.68895,0,-10.5607 0/1:14:8,6:8:280:6:185:-12.7376,0,-21.3246 dDocent_Contig_10337 13 . C T 53.6925 . AB=0.151515;ABP=37.8197;AC=1;AF=0.166667;AN=6;AO=5;CIGAR=1X;DP=55;DPB=55;DPRA=3;EPP=13.8677;EPPR=111.584;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=0.92;PAO=0;PQA=0;PQR=0;PRO=0;QA=183;QR=1933;RO=50;RPL=0;RPP=13.8677;RPPR=111.584;RPR=5;RUN=1;SAF=5;SAP=13.8677;SAR=0;SRF=50;SRP=111.584;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:33:28,5:28:1061:5:183:-6.89208,0,-85.8313 0/0:5:5,0:5:199:0:0:0,-1.50515,-18.2886 0/0:17:17,0:17:673:0:0:0,-5.11751,-60.9 dDocent_Contig_10338 108 . T C 105.378 . AB=0.461538;ABP=3.17734;AC=2;AF=0.333333;AN=6;AO=6;CIGAR=1X;DP=31;DPB=31;DPRA=0.361111;EPP=16.0391;EPPR=57.2971;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=0;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=192;QR=829;RO=25;RPL=0;RPP=16.0391;RPPR=57.2971;RPR=6;RUN=1;SAF=0;SAP=16.0391;SAR=6;SRF=0;SRP=57.2971;SRR=25;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:18:18,0:18:586:0:0:0,-5.41854,-53.0484 0/1:10:5,5:5:173:5:157:-11.4298,0,-12.8999 0/1:3:2,1:2:70:1:35:-2.59554,0,-5.74431 dDocent_Contig_10339 61 . G A 83.1951 . AB=0.444444;ABP=3.25157;AC=1;AF=0.166667;AN=6;AO=4;CIGAR=1X;DP=79;DPB=79;DPRA=0.257143;EPP=11.6962;EPPR=165.871;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=8.67362e-19;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=139;QR=2555;RO=75;RPL=0;RPP=11.6962;RPPR=165.871;RPR=4;RUN=1;SAF=0;SAP=11.6962;SAR=4;SRF=0;SRP=165.871;SRR=75;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:45:45,0:45:1543:0:0:0,-13.5463,-139.162 0/1:9:5,4:5:174:4:139:-10.1434,0,-13.2927 0/0:25:25,0:25:838:0:0:0,-7.52575,-75.73 dDocent_Contig_10341 38 . G C 105.688 . AB=0.25;ABP=13.8677;AC=1;AF=0.25;AN=4;AO=5;CIGAR=1X;DP=30;DPB=30;DPRA=2;EPP=13.8677;EPPR=57.2971;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=2;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=199;QR=996;RO=25;RPL=0;RPP=13.8677;RPPR=57.2971;RPR=5;RUN=1;SAF=5;SAP=13.8677;SAR=0;SRF=25;SRP=57.2971;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:20:15,5:15:593:5:199:-12.2678,0,-47.6855 ./.:.:.:.:.:.:.:. 0/0:10:10,0:10:403:0:0:0,-3.0103,-36.6301 dDocent_Contig_10342 9 . T G 36.3795 . AB=0.173913;ABP=24.253;AC=1;AF=0.166667;AN=6;AO=4;CIGAR=1X;DP=66;DPB=66;DPRA=1.06977;EPP=11.6962;EPPR=137.642;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=58.0968;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=0.677419;PAO=0;PQA=0;PQR=0;PRO=0;QA=134;QR=2328;RO=62;RPL=0;RPP=11.6962;RPPR=137.642;RPR=4;RUN=1;SAF=4;SAP=11.6962;SAR=0;SRF=62;SRP=137.642;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:26:26,0:26:955:0:0:0,-7.82678,-82.4314 0/0:17:17,0:17:644:0:0:0,-5.11751,-58.2918 0/1:23:19,4:19:729:4:134:-5.46176,0,-59.0168 dDocent_Contig_10343 11 . C A 308.351 . AB=0.3;ABP=20.3821;AC=3;AF=0.5;AN=6;AO=15;CIGAR=1X;DP=50;DPB=50;DPRA=0;EPP=35.5824;EPPR=79.0118;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=548;QR=1378;RO=35;RPL=0;RPP=35.5824;RPPR=79.0118;RPR=15;RUN=1;SAF=15;SAP=35.5824;SAR=0;SRF=35;SRP=79.0118;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:23:17,6:17:690:6:233:-14.4144,0,-55.5039 0/1:6:5,1:5:195:1:27:-0.893603,0,-16.1168 0/1:21:13,8:13:493:8:288:-19.9324,0,-38.3764 dDocent_Contig_10344 24 . A C 101.52 . AB=0.159091;ABP=47.4268;AC=2;AF=0.333333;AN=6;AO=8;CIGAR=1X;DP=87;DPB=87;DPRA=0;EPP=20.3821;EPPR=174.557;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=3.46945e-18;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=325;QR=3176;RO=79;RPL=0;RPP=20.3821;RPPR=174.557;RPR=8;RUN=1;SAF=8;SAP=20.3821;SAR=0;SRF=79;SRP=174.557;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:43:42,1:42:1688:1:41:0,-8.84972,-148.048 0/1:10:6,4:6:244:4:162:-11.9564,0,-19.3285 0/1:34:31,3:31:1244:3:122:-1.13747,0,-101.994 dDocent_Contig_10345 26 . A C 206.641 . AB=0.168831;ABP=76.3609;AC=2;AF=0.333333;AN=6;AO=13;CIGAR=1X;DP=87;DPB=87;DPRA=3.85;EPP=31.2394;EPPR=163.699;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=518;QR=2947;RO=74;RPL=0;RPP=31.2394;RPPR=163.699;RPR=13;RUN=1;SAF=13;SAP=31.2394;SAR=0;SRF=74;SRP=163.699;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:50:42,8:42:1676:8:316:-13.7527,0,-136.016 0/0:10:10,0:10:406:0:0:0,-3.0103,-36.9004 0/1:27:22,5:22:865:5:202:-10.4343,0,-70.03 dDocent_Contig_10346 47 . T A 1833.2 . AB=0.529412;ABP=3.90444;AC=2;AF=0.333333;AN=6;AO=63;CIGAR=1X;DP=120;DPB=120;DPRA=59.5;EPP=139.813;EPPR=126.784;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=2468;QR=2264;RO=57;RPL=0;RPP=139.813;RPPR=126.784;RPR=63;RUN=1;SAF=63;SAP=139.813;SAR=0;SRF=57;SRP=126.784;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:85:43,42:43:1701:42:1643:-122.516,0,-127.718 0/0:1:1,0:1:39:0:0:0,-0.30103,-3.89656 0/1:34:13,21:13:524:21:825:-64.3255,0,-37.2719 dDocent_Contig_10347 105 . N A 41.0073 . AB=0;ABP=0;AC=2;AF=1;AN=2;AO=2;CIGAR=3X;DP=2;DPB=2;DPRA=0;EPP=7.35324;EPPR=0;GTI=0;LEN=1;MEANALT=1;MQM=22;MQMR=0;NS=1;NUMALT=1;ODDS=5.99146;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=65;QR=0;RO=0;RPL=0;RPP=7.35324;RPPR=0;RPR=2;RUN=1;SAF=0;SAP=7.35324;SAR=2;SRF=0;SRP=0;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL .:.:.:.:.:.:.:. .:.:.:.:.:.:.:. 1|1:2:0,2:0:0:2:65:-4.09961,-0.60206,0 dDocent_Contig_10348 22 . G C 608.474 . AB=0.169903;ABP=197.979;AC=2;AF=0.333333;AN=6;AO=35;CIGAR=1X;DP=214;DPB=214;DPRA=12.875;EPP=79.0118;EPPR=391.704;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=1.38778e-17;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=1397;QR=7098;RO=179;RPL=0;RPP=79.0118;RPPR=391.704;RPR=35;RUN=1;SAF=35;SAP=79.0118;SAR=0;SRF=179;SRP=391.704;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:159:131,28:131:5209:28:1122:-53.4016,0,-420.819 0/0:8:8,0:8:322:0:0:0,-2.40824,-29.3483 0/1:47:40,7:40:1567:7:275:-10.9687,0,-127.12 dDocent_Contig_10350 14 . G C 83.2657 . AB=0.25;ABP=11.6962;AC=1;AF=0.166667;AN=6;AO=6;CIGAR=1X;DP=99;DPB=99;DPRA=5;EPP=16.0391;EPPR=204.957;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=241;QR=3703;RO=93;RPL=0;RPP=16.0391;RPPR=204.957;RPR=6;RUN=1;SAF=6;SAP=16.0391;SAR=0;SRF=93;SRP=204.957;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:74:72,2:72:2853:2:79:0,-14.779,-249.366 0/0:9:9,0:9:363:0:0:0,-2.70927,-33.0332 0/1:16:12,4:12:487:4:162:-10.1505,0,-39.3641 dDocent_Contig_10353 70 . G T 203.994 . AB=0.346154;ABP=8.35546;AC=1;AF=0.166667;AN=6;AO=9;CIGAR=1X;DP=68;DPB=68;DPRA=1.2381;EPP=22.5536;EPPR=58.9901;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=0.898305;PAO=0;PQA=0;PQR=0;PRO=0;QA=330;QR=2249;RO=59;RPL=9;RPP=22.5536;RPPR=131.127;RPR=0;RUN=1;SAF=9;SAP=22.5536;SAR=0;SRF=49;SRP=58.9901;SRR=10;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:37:37,0:37:1413:0:0:0,-11.1381,-127.45 0/0:5:5,0:5:192:0:0:0,-1.50515,-17.65 0/1:26:17,9:17:644:9:330:-22.2232,0,-50.4656 dDocent_Contig_10354 16 . C G 1424.66 . AB=0.66;ABP=14.1282;AC=4;AF=0.666667;AN=6;AO=46;CIGAR=1X;DP=64;DPB=64;DPRA=0;EPP=102.898;EPPR=42.0968;GTI=0;LEN=1;MEANALT=1;MQM=58.0435;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=0.978261;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=1828;QR=724;RO=18;RPL=0;RPP=102.898;RPPR=42.0968;RPR=46;RUN=1;SAF=46;SAP=102.898;SAR=0;SRF=18;SRP=42.0968;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:38:7,31:7:283:31:1235:-99.3896,0,-14.4039 1/1:14:1,13:1:39:13:513:-42.6182,-0.317856,0 0/1:12:10,2:10:402:2:80:-3.97922,0,-32.9279 dDocent_Contig_10355 8 . T C 4536.66 . AB=0.102362;ABP=177.429;AC=1;AF=0.166667;AN=6;AO=13;CIGAR=1X1M1X;DP=163;DPB=163;DPRA=0;EPP=31.2394;EPPR=37.7539;GTI=0;LEN=1;MEANALT=2;MQM=60;MQMR=60;NS=3;NUMALT=2;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=505;QR=618;RO=16;RPL=0;RPP=31.2394;RPPR=37.7539;RPR=13;RUN=1;SAF=13;SAP=31.2394;SAR=0;SRF=16;SRP=37.7539;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 1|0:67:2,9,56:2:78:9,56:349,2224:-204.741,-176.67,-180.372,-22.2601,0,-11.8146 0|0:36:7,0,29:7:272:0,29:0,1163:-94.1142,-96.2214,-118.571,0,-22.74,-14.0101 0|0:60:7,4,49:7:268:4,49:156,1971:-160.333,-149.618,-170.405,0,-9.16321,-7.23883 dDocent_Contig_10356 27 . G A 97.1558 . AB=0.162791;ABP=45.4803;AC=3;AF=0.5;AN=6;AO=7;CIGAR=1X;DP=43;DPB=43;DPRA=0;EPP=18.2106;EPPR=81.1833;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=277;QR=1385;RO=36;RPL=0;RPP=18.2106;RPPR=81.1833;RPR=7;RUN=1;SAF=7;SAP=18.2106;SAR=0;SRF=36;SRP=81.1833;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:20:18,2:18:692:2:79:-1.47703,0,-56.576 0/1:10:6,4:6:217:4:157:-11.4961,0,-16.8634 0/1:13:12,1:12:476:1:41:-0.181177,0,-39.2768 dDocent_Contig_10357 16 . C A 1251.27 . AB=0.376;ABP=19.7046;AC=3;AF=0.5;AN=6;AO=47;CIGAR=1X;DP=125;DPB=125;DPRA=0;EPP=96.5684;EPPR=172.385;GTI=0;LEN=1;MEANALT=1;MQM=59.6596;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=0.957447;PAIREDR=0.910256;PAO=0;PQA=0;PQR=0;PRO=0;QA=1859;QR=3099;RO=78;RPL=0;RPP=105.07;RPPR=172.385;RPR=47;RUN=1;SAF=46;SAP=96.5684;SAR=1;SRF=78;SRP=172.385;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:66:40,26:40:1579:26:1019:-72.1339,0,-122.473 0/1:25:12,13:12:474:13:519:-39.4931,0,-35.4849 0/1:34:26,8:26:1046:8:321:-19.0231,0,-84.1938 dDocent_Contig_10358 42 . C T 103.533 . AB=0.194444;ABP=32.2045;AC=3;AF=0.5;AN=6;AO=7;CIGAR=2X;DP=36;DPB=36;DPRA=0;EPP=18.2106;EPPR=65.983;GTI=0;LEN=1;MEANALT=1;MQM=52.4286;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=0;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=277;QR=1134;RO=29;RPL=0;RPP=18.2106;RPPR=65.983;RPR=7;RUN=1;SAF=7;SAP=18.2106;SAR=0;SRF=29;SRP=65.983;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|1:8:6,2:6:242:2:82:-5.37144,0,-19.7493 0|1:12:11,1:11:417:1:41:-0.482207,0,-34.2651 0|1:16:12,4:12:475:4:154:-8.50036,0,-38.2841 dDocent_Contig_10359 18 . C G 65.008 . AB=0.153846;ABP=43.6001;AC=3;AF=0.5;AN=6;AO=6;CIGAR=1X;DP=39;DPB=39;DPRA=0;EPP=16.0391;EPPR=74.6689;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=0;PAIREDR=0.909091;PAO=0;PQA=0;PQR=0;PRO=0;QA=239;QR=1330;RO=33;RPL=0;RPP=16.0391;RPPR=74.6689;RPR=6;RUN=1;SAF=6;SAP=16.0391;SAR=0;SRF=33;SRP=74.6689;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:17:15,2:15:602:2:79:-2.38012,0,-49.3999 0/1:12:9,3:9:368:3:120:-7.57495,0,-29.873 0/1:10:9,1:9:360:1:40:-0.985379,0,-29.7524 dDocent_Contig_10360 10 . G C 261.643 . AB=0.27907;ABP=21.2406;AC=3;AF=0.5;AN=6;AO=12;CIGAR=1X;DP=43;DPB=43;DPRA=0;EPP=29.068;EPPR=61.9202;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=59.3548;NS=3;NUMALT=1;ODDS=3.46945e-18;PAIRED=1;PAIREDR=0.83871;PAO=0;PQA=0;PQR=0;PRO=0;QA=483;QR=1232;RO=31;RPL=0;RPP=29.068;RPPR=70.3259;RPR=12;RUN=1;SAF=12;SAP=29.068;SAR=0;SRF=30;SRP=61.9202;SRR=1;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:17:13,4:13:518:4:162:-9.84924,0,-41.8287 0/1:16:10,6:10:390:6:239:-17.0683,0,-30.6386 0/1:10:8,2:8:324:2:82:-4.76938,0,-26.4975 dDocent_Contig_10361 15 . T C 97.471 . AB=0.333333;ABP=5.9056;AC=1;AF=0.25;AN=4;AO=4;CIGAR=1X;DP=22;DPB=22;DPRA=1.2;EPP=11.6962;EPPR=42.0968;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=58.5;NS=2;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=0.833333;PAO=0;PQA=0;PQR=0;PRO=0;QA=163;QR=655;RO=18;RPL=0;RPP=11.6962;RPPR=42.0968;RPR=4;RUN=1;SAF=4;SAP=11.6962;SAR=0;SRF=18;SRP=42.0968;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL ./.:.:.:.:.:.:.:. 0/1:12:8,4:8:296:4:163:-11.4461,0,-23.3724 0/0:10:10,0:10:359:0:0:0,-3.0103,-32.5788 dDocent_Contig_10362 82 . G A 77.6497 . AB=0.227273;ABP=17.2236;AC=1;AF=0.166667;AN=6;AO=5;CIGAR=1X;DP=33;DPB=33;DPRA=4;EPP=13.8677;EPPR=63.8115;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=173;QR=976;RO=28;RPL=5;RPP=13.8677;RPPR=63.8115;RPR=0;RUN=1;SAF=5;SAP=13.8677;SAR=0;SRF=28;SRP=63.8115;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:22:17,5:17:593:5:173:-9.28707,0,-47.0754 0/0:1:1,0:1:35:0:0:0,-0.30103,-3.49863 0/0:10:10,0:10:348:0:0:0,-3.0103,-31.656 dDocent_Contig_10363 75 . C A 93.6193 . AB=0.3125;ABP=7.89611;AC=1;AF=0.166667;AN=6;AO=5;CIGAR=1X;DP=29;DPB=29;DPRA=2.46154;EPP=13.8677;EPPR=55.1256;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=8.67362e-19;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=174;QR=826;RO=24;RPL=5;RPP=13.8677;RPPR=55.1256;RPR=0;RUN=1;SAF=5;SAP=13.8677;SAR=0;SRF=24;SRP=55.1256;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:2:2,0:2:70:0:0:0,-0.60206,-6.6474 0/0:11:11,0:11:373:0:0:0,-3.31133,-33.8981 0/1:16:11,5:11:383:5:174:-11.1855,0,-29.9885 dDocent_Contig_10365 11 . A T 17562.3 . AB=0.414013;ABP=63.5072;AC=4;AF=0.666667;AN=6;AO=619;CIGAR=6M1X2M1X2M1D3M;DP=1392;DPB=1310.94;DPRA=0;EPP=1347.15;EPPR=76.8404;GTI=0;LEN=1;MEANALT=58.3333;MQM=42.9806;MQMR=60;NS=3;NUMALT=2;ODDS=0;PAIRED=0.810985;PAIREDR=1;PAO=2;PQA=49;PQR=49;PRO=2;QA=21492;QR=1336;RO=34;RPL=0;RPP=1347.15;RPPR=76.8404;RPR=619;RUN=1;SAF=619;SAP=1347.15;SAR=0;SRF=34;SRP=76.8404;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 1|0:572:9,221,37:9:350:221,37:7847,1301:-666.899,-72.074,-34.3101,-568.771,0,-586.396 1|0:370:8,169,28:8:317:169,28:5471,1028:-455.411,-53.2187,-28.4407,-378.506,0,-396.172 1|1:450:17,229,11:17:669:229,11:8174,436:-637.442,-13.8955,0,-607.925,-34.2995,-659.65 dDocent_Contig_10367 115 . G A 62.1705 . AB=0.227273;ABP=17.2236;AC=3;AF=0.5;AN=6;AO=5;CIGAR=1X4M1X;DP=22;DPB=22;DPRA=0;EPP=13.8677;EPPR=35.5824;GTI=0;LEN=1;MEANALT=1.33333;MQM=39.8;MQMR=60;NS=3;NUMALT=2;ODDS=0;PAIRED=0;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=162;QR=507;RO=15;RPL=0;RPP=13.8677;RPPR=35.5824;RPR=5;RUN=1;SAF=0;SAP=13.8677;SAR=5;SRF=0;SRP=35.5824;SRR=15;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|1:11:8,2,1:8:277:2,1:60,34:-2.36438,0,-21.9197,-2.03891,-19.8012,-24.2875 0|1:4:1,0,3:1:31:0,3:0,93:-7.09984,-7.40087,-9.89269,0,-2.79842,-1.89533 0|1:7:6,0,1:6:199:0,1:0,35:-1.34131,-3.14749,-19.2346,0,-16.4301,-16.129 dDocent_Contig_10368 36 . C G 86.6085 . AB=0.285714;ABP=8.59409;AC=1;AF=0.25;AN=4;AO=5;CIGAR=1X;DP=43;DPB=43;DPRA=0;EPP=13.8677;EPPR=85.5263;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=2;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=197;QR=1546;RO=38;RPL=0;RPP=13.8677;RPPR=85.5263;RPR=5;RUN=1;SAF=5;SAP=13.8677;SAR=0;SRF=38;SRP=85.5263;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:29:28,1:28:1141:1:36:0,-5.13159,-99.3686 ./.:.:.:.:.:.:.:. 0/1:14:10,4:10:405:4:161:-10.6609,0,-32.5956 dDocent_Contig_10369 40 . G A 145.539 . AB=0.230769;ABP=27.5646;AC=3;AF=0.5;AN=6;AO=9;CIGAR=1X;DP=39;DPB=39;DPRA=0;EPP=22.5536;EPPR=68.1545;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=3.46945e-18;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=341;QR=1187;RO=30;RPL=0;RPP=22.5536;RPPR=68.1545;RPR=9;RUN=1;SAF=9;SAP=22.5536;SAR=0;SRF=30;SRP=68.1545;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:20:15,5:15:592:5:192:-11.6258,0,-47.5936 0/1:13:11,2:11:440:2:70:-2.73401,0,-36.0412 0/1:6:4,2:4:155:2:79:-5.69106,0,-12.5165 dDocent_Contig_10370 13 . A T 884.065 . AB=0.6;ABP=7.35324;AC=3;AF=0.5;AN=6;AO=30;CIGAR=1X;DP=50;DPB=50;DPRA=0;EPP=68.1545;EPPR=46.4397;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=3.46945e-18;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=1199;QR=795;RO=20;RPL=0;RPP=68.1545;RPPR=46.4397;RPR=30;RUN=1;SAF=30;SAP=68.1545;SAR=0;SRF=20;SRP=46.4397;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:12:6,6:6:234:6:245:-18.8171,0,-17.8146 0/1:18:8,10:8:320:10:386:-29.6706,0,-23.7488 0/1:20:6,14:6:241:14:568:-45.4416,0,-16.0455 dDocent_Contig_10371 24 . A G 33.9025 . AB=0.25;ABP=7.35324;AC=1;AF=0.25;AN=4;AO=2;CIGAR=1X;DP=14;DPB=14;DPRA=1.33333;EPP=7.35324;EPPR=29.068;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=2;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=79;QR=487;RO=12;RPL=0;RPP=7.35324;RPPR=29.068;RPR=2;RUN=1;SAF=2;SAP=7.35324;SAR=0;SRF=12;SRP=29.068;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL ./.:.:.:.:.:.:.:. 0/1:8:6,2:6:243:2:79:-5.089,0,-19.8394 0/0:6:6,0:6:244:0:0:0,-1.80618,-22.3388 dDocent_Contig_10373 8 . T C 797.499 . AB=0.0495868;ABP=216.227;AC=0;AF=0;AN=6;AO=6;CIGAR=2X2M2X;DP=199;DPB=199;DPRA=0;EPP=16.0391;EPPR=263.587;GTI=0;LEN=1;MEANALT=5;MQM=60;MQMR=60;NS=3;NUMALT=5;ODDS=0;PAIRED=1;PAIREDR=0.858333;PAO=0;PQA=0;PQR=0;PRO=0;QA=236;QR=4732;RO=120;RPL=0;RPP=16.0391;RPPR=263.587;RPR=6;RUN=1;SAF=6;SAP=16.0391;SAR=0;SRF=120;SRP=263.587;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|0:78:42,2,0,5,21,4:42:1661:2,0,5,21,4:80,0,184,839,163:-56.4715,-62.524,-198.62,-69.1147,-199.222,-205.813,-54.0752,-184.181,-190.771,-189.266,0,-130.117,-136.708,-121.667,-130.386,-55.6654,-185.774,-192.365,-177.323,-123.259,-191.161 0|0:34:17,0,3,5,8,0:17:670:0,3,5,8,0:0,117,195,327,0:-21.8749,-26.9924,-82.1136,-17.3766,-72.4966,-71.5935,-10.9666,-66.0853,-56.4686,-64.5802,0,-55.1262,-45.5089,-39.0975,-52.718,-26.9924,-82.1136,-72.4966,-66.0853,-55.1262,-82.1136 0|0:87:61,5,3,8,5,0:61:2401:5,3,8,5,0:199,119,308,205,0:-6.92646,-8.8998,-204.916,-15.4916,-196.625,-212.109,0,-181.133,-187.724,-195.112,-8.36277,-189.5,-196.09,-180.598,-204.381,-25.2893,-206.421,-213.012,-197.52,-205.887,-222.808 dDocent_Contig_10375 7 . C A 415.929 . AB=0.188034;ABP=101.914;AC=3;AF=0.5;AN=6;AO=22;CIGAR=1X4M;DP=117;DPB=117;DPRA=0;EPP=50.7827;EPPR=178.9;GTI=0;LEN=1;MEANALT=1.66667;MQM=58.5909;MQMR=60;NS=3;NUMALT=2;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=826;QR=3110;RO=81;RPL=0;RPP=50.7827;RPPR=178.9;RPR=22;RUN=1;SAF=22;SAP=50.7827;SAR=0;SRF=81;SRP=178.9;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|1:83:57,13,12:57:2184:13,12:505,464:-24.342,0,-175.329,-3.38684,-141.129,-179.015 0|1:23:16,0,7:16:615:0,7:0,252:-15.8254,-20.6419,-71.1506,0,-50.8729,-48.7657 0|1:11:8,0,3:8:311:0,3:0,110:-6.94828,-9.35652,-34.9302,0,-25.9461,-25.043 dDocent_Contig_10377 25 . G A 60.53 . AB=0.25;ABP=9.52472;AC=1;AF=0.166667;AN=6;AO=5;CIGAR=1X;DP=53;DPB=53;DPRA=1.39286;EPP=13.8677;EPPR=107.241;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=199;QR=1894;RO=48;RPL=0;RPP=13.8677;RPPR=107.241;RPR=5;RUN=1;SAF=5;SAP=13.8677;SAR=0;SRF=48;SRP=107.241;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:12:9,3:9:360:3:120:-7.57554,0,-29.1509 0/0:27:25,2:25:970:2:79:0,-0.630565,-80.1049 0/0:14:14,0:14:564:0:0:0,-4.21442,-51.1034 dDocent_Contig_10378 11 . G A 121.716 . AB=0.24;ABP=17.6895;AC=1;AF=0.166667;AN=6;AO=8;CIGAR=1X;DP=84;DPB=84;DPRA=2.3;EPP=20.3821;EPPR=168.042;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=0;PAIREDR=0.421053;PAO=0;PQA=0;PQR=0;PRO=0;QA=316;QR=3030;RO=76;RPL=0;RPP=20.3821;RPPR=168.042;RPR=8;RUN=1;SAF=8;SAP=20.3821;SAR=0;SRF=76;SRP=168.042;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:44:42,2:42:1684:2:81:0,-5.55959,-144.095 0/1:25:19,6:19:755:6:235:-13.9955,0,-60.7456 0/0:15:15,0:15:591:0:0:0,-4.51545,-53.5259 dDocent_Contig_10379 19 . C T 81.113 . AB=0.166667;ABP=37.7539;AC=2;AF=0.333333;AN=6;AO=6;CIGAR=1X;DP=61;DPB=61;DPRA=0.72;EPP=16.0391;EPPR=122.441;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=241;QR=2205;RO=55;RPL=0;RPP=16.0391;RPPR=122.441;RPR=6;RUN=1;SAF=6;SAP=16.0391;SAR=0;SRF=55;SRP=122.441;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:32:28,4:28:1114:4:159:-5.05848,0,-90.904 0/1:4:2,2:2:82:2:82:-6.57556,0,-6.57556 0/0:25:25,0:25:1009:0:0:0,-7.52575,-91.1046 dDocent_Contig_10382 10 . C T 547.664 . AB=0.133333;ABP=20.5268;AC=0;AF=0;AN=6;AO=2;CIGAR=1X2M1X1M;DP=129;DPB=129;DPRA=0;EPP=7.35324;EPPR=161.528;GTI=0;LEN=1;MEANALT=5;MQM=22;MQMR=60;NS=3;NUMALT=7;ODDS=0;PAIRED=0;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=44;QR=2865;RO=73;RPL=0;RPP=7.35324;RPPR=161.528;RPR=2;RUN=1;SAF=2;SAP=7.35324;SAR=0;SRF=73;SRP=161.528;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|0:53:28,15,0,0,3,1,1,0:28:1100:15,0,0,3,1,1,0:592,0,0,115,24,22,0:-39.4545,0,-85.9913,-47.8833,-90.5068,-138.366,-47.8833,-90.5068,-138.366,-138.366,-38.4432,-81.0681,-128.927,-128.927,-128.024,-46.3012,-88.9225,-136.78,-136.78,-127.342,-136.479,-46.4815,-89.1026,-136.96,-136.96,-127.522,-135.375,-136.659,-47.8833,-90.5068,-138.366,-138.366,-128.927,-136.78,-136.96,-138.366 0|0:15:6,0,2,2,1,2,2,0:6:230:0,2,2,1,2,2,0:0,44,78,40,62,58,0:-2.64102,-4.4472,-23.3789,-1.64352,-20.577,-19.975,-2.19659,-21.1261,-18.3311,-20.524,-1.13244,-20.0766,-17.2749,-17.8244,-19.7756,0,-18.9453,-16.147,-16.6969,-15.6421,-18.3433,-0.36553,-19.3082,-16.5105,-17.0604,-16.0052,-14.8763,-18.7062,-4.4472,-23.3789,-20.577,-21.1261,-20.0766,-18.9453,-19.3082,-23.3789 0|0:61:39,2,0,0,9,0,0,5:39:1535:2,0,0,9,0,0,5:81,0,0,362,0,0,204:-18.0954,-23.1557,-148.823,-29.8356,-149.426,-156.105,-29.8356,-149.426,-156.105,-156.105,0,-119.592,-126.271,-126.271,-123.562,-29.8356,-149.426,-156.105,-156.105,-126.271,-156.105,-29.8356,-149.426,-156.105,-156.105,-126.271,-156.105,-156.105,-13.0012,-132.593,-139.273,-139.273,-109.438,-139.273,-139.273,-137.767 dDocent_Contig_10383 24 . A C 34.5375 . AB=0.222222;ABP=9.04217;AC=1;AF=0.166667;AN=6;AO=2;CIGAR=1X;DP=29;DPB=29;DPRA=0.9;EPP=7.35324;EPPR=61.6401;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=0;PAIREDR=0.925926;PAO=0;PQA=0;PQR=0;PRO=0;QA=81;QR=1088;RO=27;RPL=0;RPP=7.35324;RPPR=61.6401;RPR=2;RUN=1;SAF=2;SAP=7.35324;SAR=0;SRF=27;SRP=61.6401;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:9:7,2:7:283:2:81:-4.97646,0,-23.1341 0/0:7:7,0:7:283:0:0:0,-2.10721,-25.8434 0/0:13:13,0:13:522:0:0:0,-3.91339,-47.3272 dDocent_Contig_10384 41 . G A 624.603 . AB=0.173913;ABP=45.4956;AC=1;AF=0.166667;AN=6;AO=8;CIGAR=4M1X8M1X;DP=46;DPB=44.7143;DPRA=0;EPP=20.3821;EPPR=33.4109;GTI=0;LEN=1;MEANALT=2.33333;MQM=60;MQMR=60;NS=3;NUMALT=3;ODDS=0;PAIRED=0.5;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=314;QR=543;RO=14;RPL=0;RPP=20.3821;RPPR=33.4109;RPR=8;RUN=1;SAF=8;SAP=20.3821;SAR=0;SRF=14;SRP=33.4109;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|0:21:8,2,2,9:8:308:2,2,9:81,78,350:-26.3463,-22.073,-46.7555,-22.3432,-40.9456,-47.0246,0,-18.5957,-18.8662,-22.5687 0|0:19:5,0,5,9:5:196:0,5,9:0,195,360:-28.1562,-29.6613,-45.7786,-13.6361,-29.7517,-28.2465,0,-16.1194,-0.0916508,-13.4102 1|0:6:1,0,1,4:1:39:0,1,4:0,41,162:-13.2511,-13.5522,-16.7554,-10.1671,-13.37,-13.069,-0.198003,-3.39398,0,-2.18986 dDocent_Contig_10385 27 . G T 77.052 . AB=0.176471;ABP=33.9218;AC=2;AF=0.333333;AN=6;AO=6;CIGAR=1X;DP=45;DPB=45;DPRA=1.54545;EPP=16.0391;EPPR=87.6977;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=0.974359;PAO=0;PQA=0;PQR=0;PRO=0;QA=230;QR=1526;RO=39;RPL=0;RPP=16.0391;RPPR=87.6977;RPR=6;RUN=1;SAF=6;SAP=16.0391;SAR=0;SRF=39;SRP=87.6977;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:20:16,4:16:612:4:155:-8.30454,0,-49.3913 0/1:14:12,2:12:469:2:75:-2.90592,0,-38.3423 0/0:11:11,0:11:445:0:0:0,-3.31133,-40.4063 dDocent_Contig_10387 209 . N G 364.483 . AB=0;ABP=0;AC=6;AF=1;AN=6;AO=10;CIGAR=1X;DP=10;DPB=10;DPRA=0;EPP=24.725;EPPR=0;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=0;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=387;QR=0;RO=0;RPL=10;RPP=24.725;RPPR=0;RPR=0;RUN=1;SAF=0;SAP=24.725;SAR=10;SRF=0;SRP=0;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 1/1:6:0,6:0:0:6:225:-20.6089,-1.80618,0 1/1:1:0,1:0:0:1:39:-3.89656,-0.30103,0 1/1:3:0,3:0:0:3:123:-11.4648,-0.90309,0 dDocent_Contig_10388 14 . A T 49.6423 . AB=0.214286;ABP=12.937;AC=1;AF=0.166667;AN=6;AO=3;CIGAR=1X;DP=28;DPB=28;DPRA=2;EPP=9.52472;EPPR=57.2971;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=0;PAIREDR=0.96;PAO=0;PQA=0;PQR=0;PRO=0;QA=118;QR=1002;RO=25;RPL=0;RPP=9.52472;RPPR=57.2971;RPR=3;RUN=1;SAF=3;SAP=9.52472;SAR=0;SRF=25;SRP=57.2971;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:9:9,0:9:363:0:0:0,-2.70927,-33.0337 0/1:14:11,3:11:442:3:118:-6.78809,0,-35.9215 0/0:5:5,0:5:197:0:0:0,-1.50515,-18.1057 dDocent_Contig_10389 7 . C T 34.6898 . AB=0.153846;ABP=30.0702;AC=2;AF=0.333333;AN=6;AO=4;CIGAR=1X;DP=45;DPB=45;DPRA=0.684211;EPP=11.6962;EPPR=92.0407;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=155;QR=1564;RO=41;RPL=0;RPP=11.6962;RPPR=92.0407;RPR=4;RUN=1;SAF=4;SAP=11.6962;SAR=0;SRF=41;SRP=92.0407;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:20:17,3:17:647:3:116:-4.7971,0,-52.5448 0/1:6:5,1:5:180:1:39:-2.09038,0,-14.7417 0/0:19:19,0:19:737:0:0:0,-5.71957,-66.6611 dDocent_Contig_10391 27 . G A 473.961 . AB=0.473684;ABP=3.23888;AC=3;AF=0.5;AN=6;AO=18;CIGAR=1X1M1X;DP=38;DPB=38;DPRA=0;EPP=42.0968;EPPR=46.4397;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=0;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=703;QR=764;RO=20;RPL=0;RPP=42.0968;RPPR=46.4397;RPR=18;RUN=1;SAF=18;SAP=42.0968;SAR=0;SRF=20;SRP=46.4397;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|1:21:11,10:11:416:10:397:-29.7667,0,-31.4664 0|1:8:3,5:3:111:5:198:-15.7891,0,-7.94533 0|1:9:6,3:6:237:3:108:-7.36317,0,-18.9939 dDocent_Contig_10392 7 . C G 104.549 . AB=0.26087;ABP=14.4341;AC=2;AF=0.333333;AN=6;AO=7;CIGAR=1X;DP=40;DPB=40;DPRA=0;EPP=18.2106;EPPR=46.79;GTI=0;LEN=1;MEANALT=1.66667;MQM=60;MQMR=56.4516;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=0.774194;PAO=0;PQA=0;PQR=0;PRO=0;QA=251;QR=1184;RO=31;RPL=0;RPP=18.2106;RPPR=70.3259;RPR=7;RUN=1;SAF=7;SAP=18.2106;SAR=0;SRF=28;SRP=46.79;SRR=3;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:18:15,3:15:567:3:107:-4.56197,0,-45.4783 0/1:5:1,3:1:39:3:117:-9.35208,0,-2.32644 0/0:17:15,1:15:578:1:27:0,-2.43658,-48.3246 dDocent_Contig_10393 7 . C T 154.949 . AB=0.411765;ABP=4.1599;AC=2;AF=0.333333;AN=6;AO=8;CIGAR=1X;DP=47;DPB=47;DPRA=0;EPP=20.3821;EPPR=87.6977;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=0.625;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=299;QR=1465;RO=39;RPL=0;RPP=20.3821;RPPR=87.6977;RPR=8;RUN=1;SAF=8;SAP=20.3821;SAR=0;SRF=39;SRP=87.6977;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:4:2,2:2:75:2:78:-6.19935,0,-5.91622 0/0:30:29,1:29:1097:1:39:0,-5.13434,-95.1313 0/1:13:8,5:8:293:5:182:-12.8184,0,-22.8058 dDocent_Contig_10394 53 . A G 377.325 . AB=0.441176;ABP=4.03217;AC=3;AF=0.5;AN=6;AO=15;CIGAR=1X3M2X;DP=34;DPB=34;DPRA=0;EPP=35.5824;EPPR=44.2683;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=582;QR=734;RO=19;RPL=15;RPP=35.5824;RPPR=44.2683;RPR=0;RUN=1;SAF=15;SAP=35.5824;SAR=0;SRF=19;SRP=44.2683;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|1:17:10,7:10:393:7:276:-20.0919,0,-30.6113 0|1:10:6,4:6:223:4:151:-10.9456,0,-17.4137 0|1:7:3,4:3:118:4:155:-12.2179,0,-8.89551 dDocent_Contig_10397 107 . N A 441.982 . AB=0;ABP=0;AC=4;AF=1;AN=4;AO=13;CIGAR=1X3M1X;DP=13;DPB=13;DPRA=0;EPP=31.2394;EPPR=0;GTI=0;LEN=1;MEANALT=1;MQM=58.9231;MQMR=0;NS=2;NUMALT=1;ODDS=0;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=480;QR=0;RO=0;RPL=0;RPP=31.2394;RPPR=0;RPR=13;RUN=1;SAF=13;SAP=31.2394;SAR=0;SRF=0;SRP=0;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 1|1:12:0,12:0:0:12:443:-40.1983,-3.61236,0 .:.:.:.:.:.:.:. 1|1:1:0,1:0:0:1:37:-3.69783,-0.30103,0 dDocent_Contig_10398 43 . C A 115.242 . AB=0.170732;ABP=41.6201;AC=1;AF=0.166667;AN=6;AO=7;CIGAR=1X;DP=68;DPB=68;DPRA=3.03704;EPP=18.2106;EPPR=135.47;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=278;QR=2327;RO=61;RPL=0;RPP=18.2106;RPPR=135.47;RPR=7;RUN=1;SAF=7;SAP=18.2106;SAR=0;SRF=61;SRP=135.47;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:41:34,7:34:1241:7:278:-13.047,0,-99.5969 0/0:4:4,0:4:163:0:0:0,-1.20412,-15.0584 0/0:23:23,0:23:923:0:0:0,-6.92369,-83.3741 dDocent_Contig_10399 15 . T A 1252.18 . AB=0.331081;ABP=39.6906;AC=3;AF=0.5;AN=6;AO=49;CIGAR=1X;DP=148;DPB=148;DPRA=0;EPP=109.412;EPPR=215.815;GTI=0;LEN=1;MEANALT=1.33333;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=1938;QR=3774;RO=98;RPL=0;RPP=109.412;RPPR=215.815;RPR=49;RUN=1;SAF=49;SAP=109.412;SAR=0;SRF=98;SRP=215.815;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:80:58,22:58:2218:22:896:-56.8628,0,-175.743 0/1:19:10,9:10:399:9:357:-26.771,0,-30.5507 0/1:49:30,18:30:1157:18:685:-47.1067,0,-89.5637 dDocent_Contig_10401 10 . C T 291.888 . AB=0.259259;ABP=30.1939;AC=2;AF=0.333333;AN=6;AO=14;CIGAR=1X;DP=80;DPB=80;DPRA=1.03846;EPP=33.4109;EPPR=146.327;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=536;QR=2674;RO=66;RPL=0;RPP=33.4109;RPPR=146.327;RPR=14;RUN=1;SAF=14;SAP=33.4109;SAR=0;SRF=66;SRP=146.327;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:47:36,11:36:1463:11:417:-23.7244,0,-117.763 0/1:7:4,3:4:155:3:119:-8.98729,0,-12.2146 0/0:26:26,0:26:1056:0:0:0,-7.82678,-95.3246 dDocent_Contig_10402 122 . A G 612.849 . AB=0.547619;ABP=3.83753;AC=3;AF=0.5;AN=6;AO=23;CIGAR=1X1M;DP=42;DPB=42;DPRA=0;EPP=52.9542;EPPR=33.4109;GTI=0;LEN=1;MEANALT=1.33333;MQM=60;MQMR=60;NS=3;NUMALT=2;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=849;QR=501;RO=14;RPL=0;RPP=52.9542;RPPR=33.4109;RPR=23;RUN=1;SAF=0;SAP=52.9542;SAR=23;SRF=0;SRP=33.4109;SRR=14;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|1:25:6,5,14:6:213:5,14:179,516:-40.4005,-27.6121,-43.457,0,-2.75372,-13.1381 0|1:9:7,0,2:7:252:0,2:0,74:-4.31661,-6.42382,-26.9775,0,-20.9212,-20.3192 0|1:8:1,0,7:1:36:0,7:0,259:-21.2579,-21.5589,-24.4951,0,-3.29724,-1.19003 dDocent_Contig_10404 13 . A C 1033.85 . AB=0.435294;ABP=6.10145;AC=3;AF=0.5;AN=6;AO=37;CIGAR=1X;DP=85;DPB=85;DPRA=0;EPP=83.3548;EPPR=107.241;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=1483;QR=1857;RO=48;RPL=0;RPP=83.3548;RPPR=107.241;RPR=37;RUN=1;SAF=37;SAP=83.3548;SAR=0;SRF=48;SRP=107.241;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:41:32,9:32:1260:9:358:-20.241,0,-101.322 0/1:9:6,3:6:213:3:113:-7.82852,0,-16.7939 0/1:35:10,25:10:384:25:1012:-80.8381,0,-24.3695 dDocent_Contig_10405 14 . G A 51.0112 . AB=0.0352941;ABP=162.447;AC=0;AF=0;AN=6;AO=3;CIGAR=1X3M1X1M1X3M;DP=99;DPB=124.3;DPRA=0;EPP=9.52472;EPPR=83.3548;GTI=0;LEN=1;MEANALT=7.5;MQM=13;MQMR=57.4054;NS=3;NUMALT=8;ODDS=0;PAIRED=0;PAIREDR=0.945946;PAO=0;PQA=0;PQR=0;PRO=0;QA=39;QR=1465;RO=37;RPL=0;RPP=9.52472;RPPR=83.3548;RPR=3;RUN=1;SAF=3;SAP=9.52472;SAR=0;SRF=37;SRP=83.3548;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|0:49:24,0,1,1,3,0,1,5,7:24:955:0,1,1,3,0,1,5,7:0,8,13,21,0,12,193,171:-4.73607,-11.9608,-88.0924,-11.7855,-87.9168,-87.6158,-11.3559,-87.4882,-87.3127,-87.1871,-11.6812,-87.8103,-87.6353,-87.2066,-86.9072,-11.9608,-88.0924,-87.9168,-87.4882,-87.8103,-88.0924,-11.4437,-87.5758,-87.4003,-86.9717,-87.2942,-87.5758,-87.2747,-10.7955,-86.9233,-86.7487,-86.32,-86.6448,-86.9233,-86.4076,-85.4181,0,-76.1596,-75.985,-75.5562,-75.8809,-76.1596,-75.6438,-74.9963,-74.0524 0|0:14:2,0,0,0,0,3,5,0,0:2:80:0,0,0,0,3,5,0,0:0,0,0,0,39,60,0,0:-1.94322,-2.54528,-9.16796,-2.54528,-9.16796,-9.16796,-2.54528,-9.16796,-9.16796,-9.16796,-2.54528,-9.16796,-9.16796,-9.16796,-9.16796,-0.745027,-7.37229,-7.37229,-7.37229,-7.37229,-6.4692,0,-6.62796,-6.62796,-6.62796,-6.62796,-4.88721,-5.12281,-2.54528,-9.16796,-9.16796,-9.16796,-9.16796,-7.37229,-6.62796,-9.16796,-2.54528,-9.16796,-9.16796,-9.16796,-9.16796,-7.37229,-6.62796,-9.16796,-9.16796 0|0:36:11,4,5,2,0,5,4,0,4:11:430:4,5,2,0,5,4,0,4:76,40,26,0,65,103,0,78:-3.75456,-2.50081,-34.6573,-6.18701,-34.9906,-38.0359,-5.85372,-34.6534,-38.3346,-38.6055,-7.06589,-35.8614,-39.541,-39.2075,-40.4169,-4.03688,-32.8436,-36.5277,-36.1882,-37.3951,-35.89,0,-28.8104,-32.4928,-32.1566,-33.3651,-30.3457,-32.161,-7.06589,-35.8614,-39.541,-39.2075,-40.4169,-37.3951,-33.3651,-40.4169,-2.01301,-30.8207,-34.5034,-34.1664,-35.3745,-32.3564,-28.3232,-35.3745,-34.1704 dDocent_Contig_10406 10 . C T 525.102 . AB=0.294118;ABP=9.26925;AC=3;AF=0.5;AN=6;AO=17;CIGAR=1X;DP=41;DPB=41;DPRA=0;EPP=39.9253;EPPR=55.1256;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=0;PAIREDR=0.916667;PAO=0;PQA=0;PQR=0;PRO=0;QA=688;QR=949;RO=24;RPL=0;RPP=39.9253;RPPR=55.1256;RPR=17;RUN=1;SAF=17;SAP=39.9253;SAR=0;SRF=24;SRP=55.1256;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 1/1:11:0,11:0:0:11:445:-40.4052,-3.31133,0 0/0:13:12,1:12:464:1:39:0,-0.0168255,-38.2059 0/1:17:12,5:12:485:5:204:-13.6265,0,-38.8834 dDocent_Contig_10407 23 . C A 895.176 . AB=0.390244;ABP=11.5903;AC=3;AF=0.5;AN=6;AO=32;CIGAR=1M1X6M;DP=82;DPB=72.5;DPRA=0;EPP=72.4974;EPPR=70.3259;GTI=0;LEN=1;MEANALT=2;MQM=60;MQMR=60;NS=3;NUMALT=2;ODDS=1.38778e-17;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=1266;QR=1236;RO=31;RPL=0;RPP=72.4974;RPPR=70.3259;RPR=32;RUN=1;SAF=32;SAP=72.4974;SAR=0;SRF=31;SRP=70.3259;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|1:46:20,10,16:20:798:10,16:396,634:-46.1574,-19.5851,-82.2972,0,-33.1309,-60.9064 0|1:8:2,2,4:2:80:2,4:81,159:-12.5766,-6.49698,-12.4859,-0.0939436,0,-5.47751 0|1:28:9,7,12:9:358:7,12:271,473:-36.2032,-16.6539,-44.0252,0,-7.22643,-25.8705 dDocent_Contig_10408 70 . T A 1434.09 . AB=0.571429;ABP=7.04303;AC=3;AF=0.5;AN=6;AO=52;CIGAR=1X;DP=91;DPB=91;DPRA=0;EPP=115.927;EPPR=87.6977;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=6.93889e-18;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=1948;QR=1486;RO=39;RPL=52;RPP=115.927;RPPR=87.6977;RPR=0;RUN=1;SAF=52;SAP=115.927;SAR=0;SRF=39;SRP=87.6977;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:49:21,28:21:791:28:1029:-78.1613,0,-56.7623 0/1:9:6,3:6:240:3:117:-8.20043,0,-19.2653 0/1:33:12,21:12:455:21:802:-62.5706,0,-31.3645 dDocent_Contig_10409 15 . T C 3504.67 . AB=0.118841;ABP=438.368;AC=1;AF=0.166667;AN=6;AO=41;CIGAR=2X2M;DP=345;DPB=344.75;DPRA=0;EPP=83.5666;EPPR=23.5295;GTI=0;LEN=1;MEANALT=6;MQM=60;MQMR=51.236;NS=3;NUMALT=4;ODDS=5.55112e-17;PAIRED=0.97561;PAIREDR=0.337079;PAO=0;PQA=0;PQR=0;PRO=0;QA=1639;QR=3338;RO=89;RPL=0;RPP=92.0407;RPPR=196.271;RPR=41;RUN=1;SAF=40;SAP=83.5666;SAR=1;SRF=30;SRP=23.5295;SRR=59;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|1:108:34,9,25,8,28:34:1289:9,25,8,28:341,925,321,1047:-65.3622,-52.6536,-149.259,0,-76.3795,-91.7978,-49.1413,-125.515,-72.8684,-146.051,-9.37036,-85.736,-33.0919,-82.2241,-100.248 0|0:95:24,0,3,12,52:24:855:0,3,12,52:0,118,467,1900:-120.703,-127.927,-191.827,-118.218,-182.118,-181.215,-89.5368,-153.44,-143.73,-149.828,0,-63.8699,-54.16,-25.4779,-48.2163 0|0:142:31,7,11,21,69:31:1194:7,11,21,69:284,422,851,2593:-169.925,-165.086,-259.559,-144.639,-227.05,-237.91,-109.067,-191.482,-171.035,-199.332,0,-82.4136,-61.9621,-26.3901,-75.8069 dDocent_Contig_10410 21 . G T 893.543 . AB=0.463768;ABP=3.79707;AC=3;AF=0.5;AN=6;AO=32;CIGAR=1X;DP=69;DPB=69;DPRA=0;EPP=72.4974;EPPR=83.3548;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=1273;QR=1453;RO=37;RPL=0;RPP=72.4974;RPPR=83.3548;RPR=32;RUN=1;SAF=32;SAP=72.4974;SAR=0;SRF=37;SRP=83.3548;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:52:28,24:28:1093:24:952:-70.3253,0,-83.0049 0/1:3:2,1:2:82:1:40:-3.09259,0,-6.87659 0/1:14:7,7:7:278:7:281:-21.4478,0,-21.174 dDocent_Contig_10411 33 . T G 37.5471 . AB=0.285714;ABP=5.80219;AC=1;AF=0.166667;AN=6;AO=2;CIGAR=1X;DP=25;DPB=25;DPRA=0.777778;EPP=7.35324;EPPR=52.9542;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=81;QR=934;RO=23;RPL=0;RPP=7.35324;RPPR=52.9542;RPR=2;RUN=1;SAF=2;SAP=7.35324;SAR=0;SRF=23;SRP=52.9542;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:12:12,0:12:486:0:0:0,-3.61236,-44.0908 0/0:6:6,0:6:243:0:0:0,-1.80618,-22.248 0/1:7:5,2:5:205:2:81:-5.57852,0,-16.7278 dDocent_Contig_10412 45 . A C 148.683 . AB=0;ABP=0;AC=2;AF=0.333333;AN=6;AO=4;CIGAR=1X;DP=16;DPB=16;DPRA=0.666667;EPP=11.6962;EPPR=29.068;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=159;QR=488;RO=12;RPL=0;RPP=11.6962;RPPR=29.068;RPR=4;RUN=1;SAF=4;SAP=11.6962;SAR=0;SRF=12;SRP=29.068;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:6:6,0:6:243:0:0:0,-1.80618,-22.248 0/0:6:6,0:6:245:0:0:0,-1.80618,-22.4295 1/1:4:0,4:0:0:4:159:-14.6921,-1.20412,0 dDocent_Contig_10414 144 . T C 43.7548 . AB=0.5;ABP=3.0103;AC=1;AF=0.166667;AN=6;AO=2;CIGAR=1X;DP=19;DPB=19;DPRA=0.533333;EPP=7.35324;EPPR=39.9253;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=78;QR=671;RO=17;RPL=0;RPP=7.35324;RPPR=39.9253;RPR=2;RUN=1;SAF=0;SAP=7.35324;SAR=2;SRF=0;SRP=39.9253;SRR=17;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:8:8,0:8:308:0:0:0,-2.40824,-28.0769 0/0:7:7,0:7:283:0:0:0,-2.10721,-25.8436 0/1:4:2,2:2:80:2:78:-6.19935,0,-6.38767 dDocent_Contig_10416 13 . C A 512.909 . AB=0.473684;ABP=3.23888;AC=2;AF=0.5;AN=4;AO=18;CIGAR=1X;DP=38;DPB=38;DPRA=0;EPP=42.0968;EPPR=46.4397;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=2;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=730;QR=787;RO=20;RPL=0;RPP=42.0968;RPPR=46.4397;RPR=18;RUN=1;SAF=18;SAP=42.0968;SAR=0;SRF=20;SRP=46.4397;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:19:13,6:13:500:6:243:-16.5284,0,-39.6079 ./.:.:.:.:.:.:.:. 0/1:19:7,12:7:287:12:487:-38.4615,0,-20.4857 dDocent_Contig_10417 10 . A G 625.461 . AB=0.186047;ABP=39.8243;AC=0;AF=0;AN=6;AO=8;CIGAR=1X1M1X1M;DP=94;DPB=94;DPRA=0;EPP=20.3821;EPPR=113.755;GTI=0;LEN=1;MEANALT=3;MQM=8;MQMR=60;NS=3;NUMALT=3;ODDS=0;PAIRED=0;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=64;QR=2015;RO=51;RPL=0;RPP=20.3821;RPPR=113.755;RPR=8;RUN=1;SAF=8;SAP=20.3821;SAR=0;SRF=51;SRP=113.755;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|0:39:23,7,0,9:23:907:7,0,9:284,0,365:-23.1764,-6.67843,-79.1833,-30.1001,-81.2905,-104.714,0,-51.1872,-74.6114,-71.9022 0|0:12:7,4,0,1:7:265:4,0,1:162,0,40:-11.2551,0,-20.4965,-13.3623,-21.7006,-35.0668,-10.0682,-18.4029,-31.7708,-31.4697 0|0:43:21,2,8,12:21:843:2,8,12:79,64,483:-33.6376,-33.4462,-102.377,-38.6431,-101.605,-105.697,0,-63.1448,-68.2986,-66.0392 dDocent_Contig_10418 16 . A T 171.905 . AB=0.266667;ABP=17.1973;AC=2;AF=0.333333;AN=6;AO=8;CIGAR=1X4M;DP=45;DPB=45;DPRA=1;EPP=20.3821;EPPR=72.4974;GTI=0;LEN=1;MEANALT=2;MQM=60;MQMR=60;NS=3;NUMALT=3;ODDS=0;PAIRED=0.875;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=311;QR=1268;RO=32;RPL=0;RPP=20.3821;RPPR=72.4974;RPR=8;RUN=1;SAF=8;SAP=20.3821;SAR=0;SRF=32;SRP=72.4974;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|1:3:2,0,0,1:2:82:0,0,1:0,0,27:-1.79669,-2.39875,-9.2599,-2.39875,-9.2599,-9.2599,0,-7.17762,-7.17762,-6.87659 0|1:27:15,3,2,7:15:591:3,2,7:111,70,284:-18.9315,-14.3726,-62.0911,-17.7591,-57.3029,-65.7776,0,-39.5677,-42.9537,-46.5378 0|0:15:15,0,0,0:15:595:0,0,0:0,0,0:0,-4.51545,-53.8892,-4.51545,-53.8892,-53.8892,-4.51545,-53.8892,-53.8892,-53.8892 dDocent_Contig_10419 19 . T C 77.2469 . AB=0.222222;ABP=15.074;AC=1;AF=0.166667;AN=6;AO=4;CIGAR=1X;DP=40;DPB=40;DPRA=1.63636;EPP=11.6962;EPPR=81.1833;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=0.972222;PAO=0;PQA=0;PQR=0;PRO=0;QA=162;QR=1449;RO=36;RPL=0;RPP=11.6962;RPPR=81.1833;RPR=4;RUN=1;SAF=4;SAP=11.6962;SAR=0;SRF=36;SRP=81.1833;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:19:19,0:19:768:0:0:0,-5.71957,-69.4408 0/0:3:3,0:3:123:0:0:0,-0.90309,-11.4648 0/1:18:14,4:14:558:4:162:-9.54842,0,-45.1409 dDocent_Contig_10420 111 . G A 37.5792 . AB=0.214286;ABP=12.937;AC=1;AF=0.166667;AN=6;AO=3;CIGAR=1X;DP=33;DPB=33;DPRA=1.47368;EPP=9.52472;EPPR=68.1545;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=8.67362e-19;PAIRED=1;PAIREDR=0.7;PAO=0;PQA=0;PQR=0;PRO=0;QA=105;QR=1040;RO=30;RPL=0;RPP=9.52472;RPPR=68.1545;RPR=3;RUN=1;SAF=0;SAP=9.52472;SAR=3;SRF=0;SRP=68.1545;SRR=30;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:11:11,0:11:383:0:0:0,-3.31133,-34.8049 0/0:8:8,0:8:274:0:0:0,-2.40824,-24.9939 0/1:14:11,3:11:383:3:105:-5.58174,0,-30.5905 dDocent_Contig_10421 16 . C T 233.965 . AB=0.30303;ABP=14.1309;AC=2;AF=0.333333;AN=6;AO=10;CIGAR=1X;DP=36;DPB=36;DPRA=5.5;EPP=24.725;EPPR=59.4686;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=0;PAIREDR=0.884615;PAO=0;PQA=0;PQR=0;PRO=0;QA=395;QR=1029;RO=26;RPL=0;RPP=24.725;RPPR=59.4686;RPR=10;RUN=1;SAF=10;SAP=24.725;SAR=0;SRF=26;SRP=59.4686;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:25:16,9:16:638:9:356:-24.8768,0,-50.2317 0/0:3:3,0:3:117:0:0:0,-0.90309,-10.9098 0/1:8:7,1:7:274:1:39:-1.48832,0,-22.6202 dDocent_Contig_10422 7 . C T 392.986 . AB=0.468085;ABP=3.42611;AC=3;AF=0.5;AN=6;AO=22;CIGAR=3X;DP=47;DPB=47;DPRA=0;EPP=50.7827;EPPR=52.9542;GTI=0;LEN=1;MEANALT=1.66667;MQM=30.1364;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=0;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=827;QR=886;RO=23;RPL=0;RPP=50.7827;RPPR=52.9542;RPR=22;RUN=1;SAF=22;SAP=50.7827;SAR=0;SRF=23;SRP=52.9542;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|1:31:12,17:12:461:17:638:-36.4631,0,-32.7984 0|1:5:3,2:3:116:2:75:-3.62475,0,-9.31255 0|1:11:8,3:8:309:3:114:-4.72989,0,-24.8618 dDocent_Contig_10425 1 . N G 67.7156 . AB=0;ABP=0;AC=2;AF=1;AN=2;AO=2;CIGAR=1X;DP=2;DPB=2;DPRA=0;EPP=7.35324;EPPR=0;GTI=0;LEN=1;MEANALT=1;MQM=40;MQMR=0;NS=1;NUMALT=1;ODDS=5.99146;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=76;QR=0;RO=0;RPL=0;RPP=7.35324;RPPR=0;RPR=2;RUN=1;SAF=2;SAP=7.35324;SAR=0;SRF=0;SRP=0;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL ./.:.:.:.:.:.:.:. 1/1:2:0,2:0:0:2:76:-6.77048,-0.60206,0 ./.:.:.:.:.:.:.:. dDocent_Contig_10426 181 . G T 70.4883 . AB=0.375;ABP=4.09604;AC=1;AF=0.166667;AN=6;AO=3;CIGAR=1X;DP=14;DPB=14;DPRA=2.66667;EPP=9.52472;EPPR=26.8965;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=121;QR=445;RO=11;RPL=3;RPP=9.52472;RPPR=26.8965;RPR=0;RUN=1;SAF=0;SAP=9.52472;SAR=3;SRF=0;SRP=26.8965;SRR=11;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:5:5,0:5:199:0:0:0,-1.50515,-18.2884 0/0:1:1,0:1:41:0:0:0,-0.30103,-4.09457 0/1:8:5,3:5:205:3:121:-8.87196,0,-16.4268 dDocent_Contig_10427 64 . G A 97.4752 . AB=0.238095;ABP=15.5221;AC=2;AF=0.333333;AN=6;AO=5;CIGAR=1X;DP=25;DPB=25;DPRA=2.625;EPP=13.8677;EPPR=46.4397;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=205;QR=787;RO=20;RPL=5;RPP=13.8677;RPPR=46.4397;RPR=0;RUN=1;SAF=5;SAP=13.8677;SAR=0;SRF=20;SRP=46.4397;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:4:4,0:4:163:0:0:0,-1.20412,-15.0584 0/1:9:8,1:8:309:1:41:-1.3853,0,-25.4621 0/1:12:8,4:8:315:4:164:-11.5375,0,-25.1015 dDocent_Contig_10428 19 . G A 786.024 . AB=0.329897;ABP=27.389;AC=3;AF=0.5;AN=6;AO=32;CIGAR=1X;DP=97;DPB=97;DPRA=0;EPP=72.4974;EPPR=144.156;GTI=0;LEN=1;MEANALT=1;MQM=44;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=0;PAIREDR=0.938462;PAO=0;PQA=0;PQR=0;PRO=0;QA=1277;QR=2615;RO=65;RPL=0;RPP=72.4974;RPPR=144.156;RPR=32;RUN=1;SAF=32;SAP=72.4974;SAR=0;SRF=65;SRP=144.156;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:79:49,30:49:1976:30:1195:-80.0346,0,-154.249 0/1:11:10,1:10:406:1:41:-0.612247,0,-33.5893 0/1:7:6,1:6:233:1:41:-1.81637,0,-19.2279 dDocent_Contig_10429 107 . N C 101.068 . AB=0;ABP=0;AC=4;AF=1;AN=4;AO=3;CIGAR=1X1M1D1M;DP=3;DPB=2.25;DPRA=0;EPP=9.52472;EPPR=0;GTI=0;LEN=1;MEANALT=1;MQM=40;MQMR=0;NS=2;NUMALT=1;ODDS=0;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=105;QR=0;RO=0;RPL=0;RPP=9.52472;RPPR=0;RPR=3;RUN=1;SAF=0;SAP=9.52472;SAR=3;SRF=0;SRP=0;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL .:.:.:.:.:.:.:. 1|1:1:0,1:0:0:1:35:-3.3807,-0.30103,0 1|1:2:0,2:0:0:2:70:-6.42333,-0.60206,0 dDocent_Contig_10430 30 . G A 35.4765 . AB=0.25;ABP=7.35324;AC=1;AF=0.166667;AN=6;AO=2;CIGAR=1X;DP=71;DPB=71;DPRA=0.253968;EPP=7.35324;EPPR=152.842;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=82;QR=2732;RO=69;RPL=0;RPP=7.35324;RPPR=152.842;RPR=2;RUN=1;SAF=2;SAP=7.35324;SAR=0;SRF=69;SRP=152.842;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:46:46,0:46:1812:0:0:0,-13.8474,-163.292 0/1:8:6,2:6:244:2:82:-5.37144,0,-19.9306 0/0:17:17,0:17:676:0:0:0,-5.11751,-61.1705 dDocent_Contig_10431 8 . T A 44.8514 . AB=0.128205;ABP=49.8362;AC=1;AF=0.25;AN=4;AO=5;CIGAR=1X;DP=44;DPB=44;DPRA=7.8;EPP=13.8677;EPPR=87.6977;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=2;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=195;QR=1504;RO=39;RPL=0;RPP=13.8677;RPPR=87.6977;RPR=5;RUN=1;SAF=5;SAP=13.8677;SAR=0;SRF=39;SRP=87.6977;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:39:34,5:34:1309:5:195:-6.18403,0,-106.358 ./.:.:.:.:.:.:.:. 0/0:5:5,0:5:195:0:0:0,-1.50515,-17.9242 dDocent_Contig_10433 74 . G A 41.2942 . AB=0.133333;ABP=20.5268;AC=3;AF=0.5;AN=6;AO=3;CIGAR=1X;DP=23;DPB=23;DPRA=1.14286;EPP=9.52472;EPPR=46.4397;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=105;QR=794;RO=20;RPL=3;RPP=9.52472;RPPR=46.4397;RPR=0;RUN=1;SAF=3;SAP=9.52472;SAR=0;SRF=20;SRP=46.4397;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:15:13,2:13:521:2:74:-2.50941,0,-42.7222 1/1:1:0,1:0:0:1:31:-3.09945,-0.30103,0 0/0:7:7,0:7:273:0:0:0,-2.10721,-24.938 dDocent_Contig_10434 7 . C A 54.0392 . AB=0.272727;ABP=7.94546;AC=1;AF=0.166667;AN=6;AO=3;CIGAR=1X;DP=32;DPB=32;DPRA=1.04762;EPP=9.52472;EPPR=65.983;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=113;QR=1119;RO=29;RPL=0;RPP=9.52472;RPPR=65.983;RPR=3;RUN=1;SAF=3;SAP=9.52472;SAR=0;SRF=29;SRP=65.983;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:18:18,0:18:691:0:0:0,-5.41854,-62.5238 0/0:3:3,0:3:117:0:0:0,-0.90309,-10.9104 0/1:11:8,3:8:311:3:113:-7.22764,0,-25.043 dDocent_Contig_10435 48 . G A 276.76 . AB=0.125828;ABP=186.636;AC=0;AF=0;AN=6;AO=19;CIGAR=1X2M2X;DP=182;DPB=182;DPRA=0;EPP=44.2683;EPPR=35.8505;GTI=0;LEN=1;MEANALT=2.5;MQM=18.3158;MQMR=48.8765;NS=3;NUMALT=2;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=759;QR=3145;RO=81;RPL=0;RPP=44.2683;RPPR=35.8505;RPR=19;RUN=1;SAF=19;SAP=44.2683;SAR=0;SRF=81;SRP=178.9;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|0:82:44,16,22:44:1722:16,22:645,886:-8.4413,-11.4741,-143.402,0,-126.633,-130.166 0|0:31:10,0,21:10:388:0,21:0,798:-11.6968,-14.7071,-44.694,0,-30.2703,-23.9487 0|0:69:27,3,38:27:1035:3,38:114,1521:-13.0607,-11.8206,-92.1558,0,-71.7817,-69.6921 dDocent_Contig_10436 16 . T A 327.516 . AB=0.413043;ABP=9.05266;AC=2;AF=0.333333;AN=6;AO=43;CIGAR=1X;DP=148;DPB=148;DPRA=0;EPP=96.3836;EPPR=231.015;GTI=0;LEN=1;MEANALT=1;MQM=18.9767;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=0.651163;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=1728;QR=4254;RO=105;RPL=0;RPP=96.3836;RPPR=231.015;RPR=43;RUN=1;SAF=43;SAP=96.3836;SAR=0;SRF=105;SRP=231.015;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:78:46,32:46:1848:32:1301:-32.5261,0,-143.037 0/1:14:8,6:8:327:6:232:-3.74584,0,-25.5857 0/0:56:51,5:51:2079:5:195:0,-10.1507,-180.571 dDocent_Contig_10437 24 . C T 1177.84 . AB=0.396226;ABP=12.9253;AC=3;AF=0.5;AN=6;AO=42;CIGAR=6M1X2M;DP=106;DPB=105;DPRA=0;EPP=94.2121;EPPR=118.098;GTI=0;LEN=1;MEANALT=2.66667;MQM=60;MQMR=60;NS=3;NUMALT=2;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=1689;QR=2091;RO=53;RPL=0;RPP=94.2121;RPPR=118.098;RPR=42;RUN=1;SAF=42;SAP=94.2121;SAR=0;SRF=53;SRP=118.098;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|1:43:25,3,14:25:992:3,14:116,553:-38.0347,-36.031,-116.798,0,-72.1994,-77.5127 0|1:28:16,2,10:16:622:2,10:80,409:-28.9427,-27.1705,-77.6657,0,-44.5082,-48.0894 0|1:35:12,4,18:12:477:4,18:155,727:-56.3298,-47.2127,-85.2794,0,-26.5486,-33.8599 dDocent_Contig_10438 10 . A C 39.0264 . AB=0.129032;ABP=40.0654;AC=1;AF=0.166667;AN=6;AO=4;CIGAR=1X;DP=218;DPB=218;DPRA=0.331551;EPP=11.6962;EPPR=450.496;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=59.6075;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=0.990654;PAO=0;PQA=0;PQR=0;PRO=0;QA=163;QR=8495;RO=214;RPL=0;RPP=11.6962;RPPR=467.705;RPR=4;RUN=1;SAF=4;SAP=11.6962;SAR=0;SRF=212;SRP=450.496;SRR=2;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:138:138,0:138:5517:0:0:0,-41.5421,-496.36 0/1:31:27,4:27:1059:4:163:-5.7265,0,-86.267 0/0:49:49,0:49:1919:0:0:0,-14.7505,-169.743 dDocent_Contig_10439 16 . C T 302.903 . AB=0.325;ABP=13.6505;AC=3;AF=0.5;AN=6;AO=13;CIGAR=1X2M1X2M1D1M;DP=40;DPB=38.375;DPRA=0;EPP=31.2394;EPPR=61.6401;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=519;QR=1075;RO=27;RPL=0;RPP=31.2394;RPPR=61.6401;RPR=13;RUN=1;SAF=13;SAP=31.2394;SAR=0;SRF=27;SRP=61.6401;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|1:24:19,5:19:756:5:202:-11.3374,0,-61.1408 0|1:10:6,4:6:238:4:161:-11.8652,0,-18.7836 0|1:6:2,4:2:81:4:156:-12.6106,0,-5.87955 dDocent_Contig_10441 36 . T C 1091.2 . AB=0.253968;ABP=102.381;AC=3;AF=0.5;AN=6;AO=48;CIGAR=2X;DP=189;DPB=189;DPRA=0;EPP=107.241;EPPR=307.016;GTI=0;LEN=1;MEANALT=1.33333;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=1896;QR=5578;RO=140;RPL=0;RPP=107.241;RPPR=307.016;RPR=48;RUN=1;SAF=48;SAP=107.241;SAR=0;SRF=140;SRP=307.016;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|1:107:88,18:88:3506:18:731:-33.8048,0,-283.273 0|1:19:11,8:11:434:8:314:-22.9029,0,-33.6943 0|1:63:41,22:41:1638:22:851:-57.9355,0,-128.687 dDocent_Contig_10442 16 . A C 125.488 . AB=0.285714;ABP=11.386;AC=2;AF=0.333333;AN=6;AO=7;CIGAR=1X2M1X;DP=58;DPB=58;DPRA=0;EPP=18.2106;EPPR=111.584;GTI=0;LEN=1;MEANALT=1.33333;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=281;QR=1973;RO=50;RPL=0;RPP=18.2106;RPPR=111.584;RPR=7;RUN=1;SAF=7;SAP=18.2106;SAR=0;SRF=50;SRP=111.584;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|0:37:36,1:36:1428:1:40:0,-7.14243,-124.779 0|1:4:3,1:3:120:1:41:-2.89045,0,-9.98378 0|1:17:11,5:11:425:5:200:-13.163,0,-33.3836 dDocent_Contig_10443 104 . N A 93.2027 . AB=0;ABP=0;AC=4;AF=1;AN=4;AO=3;CIGAR=1X;DP=3;DPB=3;DPRA=0;EPP=9.52472;EPPR=0;GTI=0;LEN=1;MEANALT=1;MQM=45.6667;MQMR=0;NS=2;NUMALT=1;ODDS=0;PAIRED=0.666667;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=114;QR=0;RO=0;RPL=0;RPP=9.52472;RPPR=0;RPR=3;RUN=1;SAF=3;SAP=9.52472;SAR=0;SRF=0;SRP=0;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 1/1:1:0,1:0:0:1:39:-1.89573,-0.30103,0 1/1:2:0,2:0:0:2:75:-7.11914,-0.60206,0 ./.:.:.:.:.:.:.:. dDocent_Contig_10444 91 . G A 219.352 . AB=0.254902;ABP=29.6215;AC=2;AF=0.333333;AN=6;AO=15;CIGAR=1X;DP=75;DPB=75;DPRA=0;EPP=35.5824;EPPR=133.299;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=0.75;PAO=0;PQA=0;PQR=0;PRO=0;QA=510;QR=1996;RO=60;RPL=15;RPP=35.5824;RPPR=133.299;RPR=0;RUN=1;SAF=15;SAP=35.5824;SAR=0;SRF=60;SRP=133.299;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:29:22,7:22:740:7:245:-13.6614,0,-58.1834 0/0:24:22,2:22:715:2:64:0,-1.14606,-58.5753 0/1:22:16,6:16:541:6:201:-11.7966,0,-42.3884 dDocent_Contig_10445 45 . C T 39.9411 . AB=0.125;ABP=42.0968;AC=1;AF=0.166667;AN=6;AO=4;CIGAR=1X;DP=52;DPB=52;DPRA=3.2;EPP=11.6962;EPPR=107.241;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=164;QR=1921;RO=48;RPL=0;RPP=11.6962;RPPR=107.241;RPR=4;RUN=1;SAF=4;SAP=11.6962;SAR=0;SRF=48;SRP=107.241;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:32:28,4:28:1110:4:164:-5.51694,0,-90.5467 0/0:10:10,0:10:404:0:0:0,-3.0103,-36.7201 0/0:10:10,0:10:407:0:0:0,-3.0103,-36.9904 dDocent_Contig_10446 16 . C A 44.785 . AB=0.1875;ABP=16.582;AC=1;AF=0.166667;AN=6;AO=3;CIGAR=1X;DP=25;DPB=25;DPRA=3.55556;EPP=3.73412;EPPR=50.7827;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=0;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=116;QR=874;RO=22;RPL=0;RPP=9.52472;RPPR=50.7827;RPR=3;RUN=1;SAF=1;SAP=3.73412;SAR=2;SRF=22;SRP=50.7827;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:16:13,3:13:514:3:116:-6.00122,0,-41.7877 0/0:4:4,0:4:156:0:0:0,-1.20412,-14.4157 0/0:5:5,0:5:204:0:0:0,-1.50515,-18.744 dDocent_Contig_10447 49 . C T 180.682 . AB=0.192308;ABP=45.7716;AC=1;AF=0.166667;AN=6;AO=10;CIGAR=1X;DP=196;DPB=196;DPRA=0.722222;EPP=3.0103;EPPR=348.391;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=391;QR=7467;RO=186;RPL=5;RPP=3.0103;RPPR=348.391;RPR=5;RUN=1;SAF=10;SAP=24.725;SAR=0;SRF=186;SRP=406.904;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:135:135,0:135:5417:0:0:0,-40.639,-487.354 0/0:9:9,0:9:368:0:0:0,-2.70927,-33.4854 0/1:52:42,10:42:1682:10:391:-19.8921,0,-135.948 dDocent_Contig_10450 10 . A C 137.766 . AB=0.122642;ABP=134.118;AC=2;AF=0.333333;AN=6;AO=14;CIGAR=1X;DP=140;DPB=140;DPRA=0;EPP=33.4109;EPPR=276.616;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=569;QR=4987;RO=126;RPL=0;RPP=33.4109;RPPR=276.616;RPR=14;RUN=1;SAF=14;SAP=33.4109;SAR=0;SRF=126;SRP=276.616;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:96:84,12:84:3318:12:487:-15.2822,0,-269.778 0/1:10:9,1:9:355:1:41:-1.08427,0,-29.3009 0/0:34:33,1:33:1314:1:41:0,-6.14045,-114.429 dDocent_Contig_10451 14 . A T 573.88 . AB=0.210145;ABP=103.716;AC=3;AF=0.5;AN=6;AO=29;CIGAR=1X;DP=138;DPB=138;DPRA=0;EPP=65.983;EPPR=239.701;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=0.990826;PAO=0;PQA=0;PQR=0;PRO=0;QA=1133;QR=4383;RO=109;RPL=0;RPP=65.983;RPPR=239.701;RPR=29;RUN=1;SAF=29;SAP=65.983;SAR=0;SRF=109;SRP=239.701;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:99:74,25:74:2973:25:981:-58.7825,0,-237.855 0/1:10:9,1:9:363:1:37:-0.687529,0,-30.0241 0/1:29:26,3:26:1047:3:115:-1.99251,0,-85.7912 dDocent_Contig_10454 9 . G A 57.7925 . AB=0.235294;ABP=13.3567;AC=2;AF=0.333333;AN=6;AO=4;CIGAR=1X;DP=19;DPB=19;DPRA=4.25;EPP=5.18177;EPPR=35.5824;GTI=0;LEN=1;MEANALT=1;MQM=56;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=0;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=153;QR=577;RO=15;RPL=0;RPP=11.6962;RPPR=35.5824;RPR=4;RUN=1;SAF=3;SAP=5.18177;SAR=1;SRF=15;SRP=35.5824;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:7:6,1:6:233:1:40:-1.74726,0,-19.2329 0/1:10:7,3:7:266:3:113:-7.52867,0,-21.2914 0/0:2:2,0:2:78:0:0:0,-0.60206,-7.40347 dDocent_Contig_10455 177 . G A 36.0665 . AB=0.166667;ABP=20.3821;AC=1;AF=0.25;AN=4;AO=3;CIGAR=1X;DP=23;DPB=23;DPRA=3.6;EPP=9.52472;EPPR=46.4397;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=2;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=115;QR=776;RO=20;RPL=3;RPP=9.52472;RPPR=46.4397;RPR=0;RUN=1;SAF=0;SAP=9.52472;SAR=3;SRF=0;SRP=46.4397;SRR=20;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:18:15,3:15:594:3:115:-5.30545,0,-48.3761 ./.:.:.:.:.:.:.:. 0/0:5:5,0:5:182:0:0:0,-1.50515,-16.7308 dDocent_Contig_10456 107 . N T 229.51 . AB=0;ABP=0;AC=4;AF=1;AN=4;AO=7;CIGAR=1X;DP=7;DPB=7;DPRA=0;EPP=18.2106;EPPR=0;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=0;NS=2;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=244;QR=0;RO=0;RPL=0;RPP=18.2106;RPPR=0;RPR=7;RUN=1;SAF=0;SAP=18.2106;SAR=7;SRF=0;SRP=0;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 1/1:2:0,2:0:0:2:70:-6.6474,-0.60206,0 ./.:.:.:.:.:.:.:. 1/1:5:0,5:0:0:5:174:-16.002,-1.50515,0 dDocent_Contig_10457 9 . G C 107.659 . AB=0.233333;ABP=21.5402;AC=3;AF=0.5;AN=6;AO=7;CIGAR=1X;DP=30;DPB=30;DPRA=0;EPP=18.2106;EPPR=52.9542;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=58.4348;NS=3;NUMALT=1;ODDS=0;PAIRED=0.857143;PAIREDR=0.913043;PAO=0;PQA=0;PQR=0;PRO=0;QA=268;QR=889;RO=23;RPL=0;RPP=18.2106;RPPR=52.9542;RPR=7;RUN=1;SAF=7;SAP=18.2106;SAR=0;SRF=23;SRP=52.9542;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:4:3,1:3:116:1:37:-2.49371,0,-9.61358 0/1:10:6,4:6:231:4:153:-11.1313,0,-18.1476 0/1:16:14,2:14:542:2:78:-2.58699,0,-43.9955 dDocent_Contig_10458 7 . C T 137.817 . AB=0.315789;ABP=8.61041;AC=1;AF=0.166667;AN=6;AO=6;CIGAR=2X;DP=38;DPB=38;DPRA=2;EPP=16.0391;EPPR=70.3259;GTI=0;LEN=1;MEANALT=1;MQM=52.1667;MQMR=59.2258;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=234;QR=1195;RO=31;RPL=0;RPP=16.0391;RPPR=70.3259;RPR=6;RUN=1;SAF=6;SAP=16.0391;SAR=0;SRF=31;SRP=70.3259;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|0:14:13,0:13:505:0:0:0,-3.91339,-45.3645 0|0:5:5,0:5:194:0:0:0,-1.50515,-17.8328 0|1:19:13,6:13:496:6:234:-15.6055,0,-39.2672 dDocent_Contig_10459 7 . C A 1270.09 . AB=0.165306;ABP=479.777;AC=2;AF=0.333333;AN=6;AO=92;CIGAR=1X;DP=631;DPB=631;DPRA=0;EPP=202.786;EPPR=1130;GTI=0;LEN=1;MEANALT=2.33333;MQM=59.4457;MQMR=58.3237;NS=3;NUMALT=1;ODDS=0;PAIRED=0.98913;PAIREDR=0.947977;PAO=0;PQA=0;PQR=0;PRO=0;QA=3499;QR=19891;RO=519;RPL=0;RPP=202.786;RPPR=1130;RPR=92;RUN=1;SAF=92;SAP=202.786;SAR=0;SRF=519;SRP=1130;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:318:247,64:247:9486:64:2423:-121.661,0,-739.36 0/0:141:123,11:123:4683:11:422:0,-2.3548,-377.411 0/1:172:149,17:149:5722:17:654:-8.8707,0,-450.397 dDocent_Contig_10460 31 . C G 786.085 . AB=0.354839;ABP=8.68415;AC=4;AF=0.666667;AN=6;AO=25;CIGAR=1X;DP=45;DPB=45;DPRA=0;EPP=57.2971;EPPR=46.4397;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=1004;QR=805;RO=20;RPL=0;RPP=57.2971;RPPR=46.4397;RPR=25;RUN=1;SAF=25;SAP=57.2971;SAR=0;SRF=20;SRP=46.4397;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:17:9,8:9:364:8:325:-24.5015,0,-28.0069 0/1:14:11,3:11:441:3:122:-7.15807,0,-35.8304 1/1:14:0,14:0:0:14:557:-50.4718,-4.21442,0 dDocent_Contig_10462 9 . G A 360.215 . AB=0.451613;ABP=3.64073;AC=2;AF=0.333333;AN=6;AO=19;CIGAR=1X;DP=112;DPB=112;DPRA=0;EPP=44.2683;EPPR=204.957;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=726;QR=3584;RO=93;RPL=0;RPP=44.2683;RPPR=204.957;RPR=19;RUN=1;SAF=19;SAP=44.2683;SAR=0;SRF=93;SRP=204.957;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:81:76,5:76:2929:5:191:0,-6.82491,-246.219 0/1:16:10,6:10:386:6:234:-16.6146,0,-30.2807 0/1:15:7,8:7:269:8:301:-22.9297,0,-20.0587 dDocent_Contig_10463 62 . A C 88.286 . AB=0.15;ABP=66.8516;AC=2;AF=0.333333;AN=6;AO=9;CIGAR=1X;DP=66;DPB=66;DPRA=5;EPP=22.5536;EPPR=126.784;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=3.46945e-18;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=330;QR=2065;RO=57;RPL=9;RPP=22.5536;RPPR=126.784;RPR=0;RUN=1;SAF=9;SAP=22.5536;SAR=0;SRF=57;SRP=126.784;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:48:42,6:42:1539:6:222:-5.88862,0,-124.348 0/0:6:6,0:6:211:0:0:0,-1.80618,-19.3292 0/1:12:9,3:9:315:3:108:-6.46281,0,-25.0761 dDocent_Contig_10464 19 . C A 176.082 . AB=0.318182;ABP=9.32731;AC=1;AF=0.166667;AN=6;AO=7;CIGAR=1M3I1X1M1X;DP=38;DPB=43.25;DPRA=2.75;EPP=18.2106;EPPR=70.3259;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=282;QR=1223;RO=31;RPL=0;RPP=18.2106;RPPR=70.3259;RPR=7;RUN=1;SAF=7;SAP=18.2106;SAR=0;SRF=31;SRP=70.3259;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|1:22:15,7:15:603:7:282:-19.1303,0,-47.9869 0|0:15:15,0:15:581:0:0:0,-4.51545,-52.6278 0|0:1:1,0:1:39:0:0:0,-0.30103,-3.89656 dDocent_Contig_10466 25 . C T 243.529 . 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G A 41.686 . AB=0.4;ABP=3.44459;AC=1;AF=0.166667;AN=6;AO=9;CIGAR=2X;DP=159;DPB=159;DPRA=1.12245;EPP=22.5536;EPPR=290.584;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=0.966216;PAO=0;PQA=0;PQR=0;PRO=0;QA=355;QR=5605;RO=148;RPL=0;RPP=22.5536;RPPR=324.388;RPR=9;RUN=1;SAF=9;SAP=22.5536;SAR=0;SRF=144;SRP=290.584;SRR=4;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|0:105:98,7:98:3712:7:276:0,-6.39874,-308.997 0|1:5:3,2:3:112:2:79:-5.99248,0,-8.94115 0|0:49:47,0:47:1781:0:0:0,-14.1484,-160.164 dDocent_Contig_10469 140 . A G 74.8562 . AB=0;ABP=0;AC=2;AF=0.333333;AN=6;AO=2;CIGAR=1X;DP=16;DPB=16;DPRA=0.285714;EPP=7.35324;EPPR=33.4109;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=77;QR=562;RO=14;RPL=0;RPP=7.35324;RPPR=33.4109;RPR=2;RUN=1;SAF=0;SAP=7.35324;SAR=2;SRF=0;SRP=33.4109;SRR=14;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:7:7,0:7:279:0:0:0,-2.10721,-25.4803 1/1:2:0,2:0:0:2:77:-7.30914,-0.60206,0 0/0:7:7,0:7:283:0:0:0,-2.10721,-25.843 dDocent_Contig_10470 13 . C T 4552.68 . AB=0.109948;ABP=255.413;AC=0;AF=0;AN=6;AO=21;CIGAR=1X2M1X;DP=253;DPB=253;DPRA=0;EPP=48.6112;EPPR=96.1281;GTI=0;LEN=1;MEANALT=4.5;MQM=60;MQMR=60;NS=3;NUMALT=3;ODDS=2.77556e-17;PAIRED=1;PAIREDR=0.573529;PAO=0;PQA=0;PQR=0;PRO=0;QA=815;QR=2645;RO=68;RPL=0;RPP=48.6112;RPPR=150.67;RPR=21;RUN=1;SAF=21;SAP=48.6112;SAR=0;SRF=61;SRP=96.1281;SRR=7;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|0:88:22,10,0,52:22:870:10,0,52:388,0,2091:-165.7,-140.449,-209.032,-172.323,-212.042,-243.916,0,-39.7245,-71.598,-55.9444 0|0:103:31,11,0,53:31:1200:11,0,53:427,0,2105:-163.957,-138.205,-233.462,-173.289,-236.773,-271.858,0,-63.4865,-98.5721,-82.6175 0|0:62:15,0,6,41:15:575:0,6,41:0,226,1646:-131.133,-135.648,-182.833,-117.135,-164.318,-162.512,0,-47.1924,-28.6776,-34.8502 dDocent_Contig_10473 8 . T C 741.712 . AB=0.447368;ABP=4.83891;AC=3;AF=0.5;AN=6;AO=34;CIGAR=1X;DP=76;DPB=76;DPRA=0;EPP=76.8404;EPPR=94.2121;GTI=0;LEN=1;MEANALT=1;MQM=56.1176;MQMR=60;NS=3;NUMALT=1;ODDS=6.93889e-18;PAIRED=0.264706;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=1130;QR=1596;RO=42;RPL=0;RPP=76.8404;RPPR=94.2121;RPR=34;RUN=1;SAF=34;SAP=76.8404;SAR=0;SRF=42;SRP=94.2121;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:46:31,15:31:1176:15:506:-31.9445,0,-92.2896 0/1:20:3,17:3:111:17:559:-44.5775,0,-4.33289 0/1:10:8,2:8:309:2:65:-3.1616,0,-25.1627 dDocent_Contig_10477 19 . G C 17680.3 . AB=0.180436;ABP=1345.06;AC=1;AF=0.166667;AN=6;AO=273;CIGAR=1X3M;DP=1513;DPB=1513;DPRA=0;EPP=595.822;EPPR=995.392;GTI=0;LEN=1;MEANALT=11.6667;MQM=59.3004;MQMR=59.8265;NS=3;NUMALT=3;ODDS=0;PAIRED=1;PAIREDR=0.980477;PAO=0;PQA=0;PQR=0;PRO=0;QA=10659;QR=17400;RO=461;RPL=0;RPP=595.822;RPPR=1004.06;RPR=273;RUN=1;SAF=273;SAP=595.822;SAR=0;SRF=460;SRP=995.392;SRR=1;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|0:767:238,1,304,141:238:8968:1,304,141:40,11563,5516:-876.396,-944.746,-1678.76,0,-731.016,-642.798,-495.669,-1226.69,-281.937,-1187.54 0|1:186:32,11,79,45:32:1197:11,79,45:438,3021,1720:-281.21,-254.775,-349.485,-43.0925,-105.044,-117.332,-149.731,-211.684,0,-234.206 0|0:560:191,7,217,87:191:7235:7,217,87:276,8216,3423:-615.95,-650.738,-1241.79,0,-570.45,-527.836,-392.06,-962.514,-311.772,-959.033 dDocent_Contig_10479 48 . G C 779.828 . AB=0.482759;ABP=3.16006;AC=3;AF=0.5;AN=6;AO=28;CIGAR=1X;DP=58;DPB=58;DPRA=0;EPP=63.8115;EPPR=68.1545;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=1110;QR=1170;RO=30;RPL=0;RPP=63.8115;RPPR=68.1545;RPR=28;RUN=1;SAF=28;SAP=63.8115;SAR=0;SRF=30;SRP=68.1545;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:28:15,13:15:590:13:523:-38.9887,0,-45.0059 0/1:4:2,2:2:75:2:76:-6.01014,0,-5.91622 0/1:26:13,13:13:505:13:511:-38.5069,0,-37.9648 dDocent_Contig_10481 11 . A G 341.411 . AB=0.27451;ABP=25.534;AC=1;AF=0.166667;AN=6;AO=14;CIGAR=4M1X3M;DP=94;DPB=93.75;DPRA=2.37209;EPP=33.4109;EPPR=157.185;GTI=0;LEN=1;MEANALT=3;MQM=60;MQMR=60;NS=3;NUMALT=3;ODDS=0;PAIRED=0.357143;PAIREDR=0.971831;PAO=0;PQA=0;PQR=0;PRO=0;QA=554;QR=2753;RO=71;RPL=0;RPP=33.4109;RPPR=157.185;RPR=14;RUN=1;SAF=14;SAP=33.4109;SAR=0;SRF=71;SRP=157.185;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|1:51:33,0,2,14:33:1297:0,2,14:0,79,554:-35.6626,-45.5966,-152.28,-39.0955,-145.779,-145.177,0,-106.689,-100.188,-102.474 0|0:17:17,0,0,0:17:650:0,0,0:0,0,0:0,-5.11751,-58.8304,-5.11751,-58.8304,-58.8304,-5.11751,-58.8304,-58.8304,-58.8304 0|0:26:21,2,2,0:21:806:2,2,0:63,76,0:0,-1.28019,-66.8443,-0.0687773,-61.2137,-65.6707,-6.32163,-67.4464,-66.2728,-72.5059 dDocent_Contig_10482 7 . C A 36.0661 . AB=0.1;ABP=155.882;AC=1;AF=0.166667;AN=6;AO=14;CIGAR=1X;DP=176;DPB=176;DPRA=0;EPP=33.4109;EPPR=354.789;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=529;QR=6208;RO=162;RPL=0;RPP=33.4109;RPPR=354.789;RPR=14;RUN=1;SAF=14;SAP=33.4109;SAR=0;SRF=162;SRP=354.789;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:110:99,11:99:3798:11:421:-5.12938,0,-308.81 0/0:21:20,1:20:759:1:39:0,-2.42507,-64.7416 0/0:45:43,2:43:1651:2:69:0,-6.99406,-142.298 dDocent_Contig_10483 40 . C T 344.553 . AB=0.393939;ABP=6.23461;AC=2;AF=0.5;AN=4;AO=13;CIGAR=1X;DP=33;DPB=33;DPRA=0;EPP=31.2394;EPPR=46.4397;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=2;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=0.9;PAO=0;PQA=0;PQR=0;PRO=0;QA=526;QR=791;RO=20;RPL=0;RPP=31.2394;RPPR=46.4397;RPR=13;RUN=1;SAF=13;SAP=31.2394;SAR=0;SRF=20;SRP=46.4397;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:21:11,10:11:422:10:406:-30.579,0,-32.0055 ./.:.:.:.:.:.:.:. 0/1:12:9,3:9:369:3:120:-7.57533,0,-29.9631 dDocent_Contig_10484 1 . N G 93.3107 . AB=0;ABP=0;AC=2;AF=1;AN=2;AO=3;CIGAR=1X;DP=3;DPB=3;DPRA=0;EPP=9.52472;EPPR=0;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=0;NS=1;NUMALT=1;ODDS=6.68461;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=100;QR=0;RO=0;RPL=0;RPP=9.52472;RPPR=0;RPR=3;RUN=1;SAF=0;SAP=9.52472;SAR=3;SRF=0;SRP=0;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 1/1:3:0,3:0:0:3:100:-9.33053,-0.90309,0 ./.:.:.:.:.:.:.:. ./.:.:.:.:.:.:.:. dDocent_Contig_10486 15 . G C 337.289 . AB=0.176991;ABP=105.415;AC=2;AF=0.333333;AN=6;AO=20;CIGAR=1X;DP=138;DPB=138;DPRA=2.26;EPP=46.4397;EPPR=259.244;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=784;QR=4568;RO=118;RPL=0;RPP=46.4397;RPPR=259.244;RPR=20;RUN=1;SAF=20;SAP=46.4397;SAR=0;SRF=118;SRP=259.244;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:69:55,14:55:2120:14:546:-28.7029,0,-170.227 0/1:44:38,6:38:1469:6:238:-8.54883,0,-119.223 0/0:25:25,0:25:979:0:0:0,-7.52575,-88.4125 dDocent_Contig_10487 83 . T C 2218.6 . AB=0.56;ABP=7.70068;AC=3;AF=0.5;AN=6;AO=84;CIGAR=1X;DP=150;DPB=150;DPRA=0;EPP=185.414;EPPR=141.985;GTI=0;LEN=1;MEANALT=1.33333;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=0.890625;PAO=0;PQA=0;PQR=0;PRO=0;QA=3015;QR=2325;RO=64;RPL=84;RPP=185.414;RPPR=141.985;RPR=0;RUN=1;SAF=84;SAP=185.414;SAR=0;SRF=64;SRP=141.985;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:81:28,53:28:1023:53:1922:-148.863,0,-68.0009 0/1:50:27,21:27:986:21:750:-53.0392,0,-74.2699 0/1:19:9,10:9:316:10:343:-25.4811,0,-23.0598 dDocent_Contig_10488 122 . T C 1915.52 . AB=0.817073;ABP=74.6159;AC=4;AF=0.666667;AN=6;AO=85;CIGAR=1X;DP=101;DPB=101;DPRA=0;EPP=187.585;EPPR=37.7539;GTI=0;LEN=1;MEANALT=1;MQM=38.1059;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=0;PAIREDR=0.9375;PAO=0;PQA=0;PQR=0;PRO=0;QA=2915;QR=544;RO=16;RPL=0;RPP=187.585;RPPR=37.7539;RPR=85;RUN=1;SAF=0;SAP=187.585;SAR=85;SRF=0;SRP=37.7539;SRR=16;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:48:7,41:7:231:41:1418:-97.7367,0,-6.66198 1/1:19:1,18:1:26:18:600:-40.3842,-3.11974,0 0/1:34:8,26:8:287:26:897:-56.9539,0,-15.9415 dDocent_Contig_10490 17 . C T 227.949 . AB=0.120603;ABP=251.813;AC=3;AF=0.5;AN=6;AO=24;CIGAR=1X;DP=199;DPB=199;DPRA=0;EPP=55.1256;EPPR=383.018;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=1.38778e-17;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=968;QR=6918;RO=175;RPL=0;RPP=55.1256;RPPR=383.018;RPR=24;RUN=1;SAF=24;SAP=55.1256;SAR=0;SRF=175;SRP=383.018;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:75:66,9:66:2604:9:368:-10.9081,0,-211.913 0/1:31:26,5:26:1032:5:199:-8.95613,0,-83.8376 0/1:93:83,10:83:3282:10:401:-8.45359,0,-267.448 dDocent_Contig_10491 67 . A G 160.143 . AB=0.181818;ABP=32.0291;AC=3;AF=0.5;AN=6;AO=6;CIGAR=7M1X6M;DP=33;DPB=29.5714;DPRA=0;EPP=16.0391;EPPR=48.6112;GTI=0;LEN=1;MEANALT=2;MQM=60;MQMR=60;NS=3;NUMALT=2;ODDS=3.46945e-18;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=219;QR=751;RO=21;RPL=6;RPP=16.0391;RPPR=48.6112;RPR=0;RUN=1;SAF=6;SAP=16.0391;SAR=0;SRF=21;SRP=48.6112;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|1:12:10,0,2:10:364:0,2:0,75:-3.50798,-6.51828,-36.2414,0,-30.0961,-29.494 0|1:8:1,4,2:1:30:4,2:145,74:-15.292,-3.722,-4.91482,-9.52648,0,-11.3187 0|1:13:10,0,2:10:357:0,2:0,70:-2.70513,-5.71543,-34.8336,0,-29.1387,-28.5366 dDocent_Contig_10492 17 . T C 139.23 . AB=0.0909091;ABP=34.9902;AC=0;AF=0;AN=6;AO=2;CIGAR=1X2M1X5M;DP=40;DPB=40;DPRA=0;EPP=7.35324;EPPR=63.8115;GTI=0;LEN=1;MEANALT=2;MQM=47;MQMR=60;NS=3;NUMALT=3;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=81;QR=1102;RO=28;RPL=0;RPP=7.35324;RPPR=63.8115;RPR=2;RUN=1;SAF=2;SAP=7.35324;SAR=0;SRF=28;SRP=63.8115;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|0:22:16,2,0,4:16:630:2,0,4:81,0,146:-7.08868,-5.36542,-56.6127,-11.9052,-57.2148,-63.7448,0,-45.2943,-51.8239,-50.6198 0|0:5:4,0,1,0:4:158:0,1,0:0,39,0:-2.36828,-3.5724,-16.58,0,-13.3964,-13.0953,-3.5724,-16.58,-13.3964,-16.58 0|0:13:8,0,4,0:8:314:0,4,0:0,151,0:-9.93084,-12.3391,-38.1695,0,-25.8171,-24.613,-12.3391,-38.1695,-25.8171,-38.1695 dDocent_Contig_10494 10 . C T 737.34 . AB=0.0983607;ABP=88.4809;AC=0;AF=0;AN=6;AO=6;CIGAR=1M1X3M;DP=85;DPB=90.8;DPRA=61;EPP=16.0391;EPPR=107.241;GTI=0;LEN=1;MEANALT=4;MQM=60;MQMR=60;NS=3;NUMALT=2;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=231;QR=1836;RO=48;RPL=0;RPP=16.0391;RPPR=107.241;RPR=6;RUN=1;SAF=6;SAP=16.0391;SAR=0;SRF=48;SRP=107.241;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|0:61:34,19,6:34:1294:19,6:725,231:-49.2458,0,-100.405,-40.5156,-87.1599,-144.834 0|0:1:0,1,0:0:0:1,0:38,0:-3.79727,-0.30103,0,-3.79727,-0.30103,-3.79727 0|0:23:14,9,0:14:542:9,0:342,0:-24.2123,0,-42.2,-28.4267,-44.9093,-72.9535 dDocent_Contig_10495 17 . A G 62.6081 . AB=0.3;ABP=6.48466;AC=1;AF=0.166667;AN=6;AO=3;CIGAR=1X;DP=40;DPB=40;DPRA=0.666667;EPP=9.52472;EPPR=83.3548;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=8.67362e-19;PAIRED=1;PAIREDR=0.945946;PAO=0;PQA=0;PQR=0;PRO=0;QA=119;QR=1455;RO=37;RPL=0;RPP=9.52472;RPPR=83.3548;RPR=3;RUN=1;SAF=3;SAP=9.52472;SAR=0;SRF=37;SRP=83.3548;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:11:11,0:11:441:0:0:0,-3.31133,-40.0448 0/1:10:7,3:7:272:3:119:-8.08471,0,-21.8346 0/0:19:19,0:19:742:0:0:0,-5.71957,-67.1052 dDocent_Contig_10496 1 . N G 76.8682 . AB=0;ABP=0;AC=2;AF=1;AN=2;AO=2;CIGAR=1X;DP=2;DPB=2;DPRA=0;EPP=7.35324;EPPR=0;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=0;NS=1;NUMALT=1;ODDS=5.99146;PAIRED=1;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=81;QR=0;RO=0;RPL=0;RPP=7.35324;RPPR=0;RPR=2;RUN=1;SAF=2;SAP=7.35324;SAR=0;SRF=0;SRP=0;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 1/1:2:0,2:0:0:2:81:-7.68573,-0.60206,0 ./.:.:.:.:.:.:.:. ./.:.:.:.:.:.:.:. dDocent_Contig_10498 10 . C A 47.7142 . AB=0.666667;ABP=3.73412;AC=1;AF=0.166667;AN=6;AO=2;CIGAR=1X;DP=58;DPB=58;DPRA=0.109091;EPP=7.35324;EPPR=124.613;GTI=0;LEN=1;MEANALT=1;MQM=46;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=0;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=81;QR=2262;RO=56;RPL=0;RPP=7.35324;RPPR=124.613;RPR=2;RUN=1;SAF=2;SAP=7.35324;SAR=0;SRF=56;SRP=124.613;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:46:46,0:46:1853:0:0:0,-13.8474,-166.971 0/1:3:1,2:1:41:2:81:-6.58611,0,-3.19148 0/0:9:9,0:9:368:0:0:0,-2.70927,-33.4854 dDocent_Contig_10499 7 . C A 131.508 . AB=0.25;ABP=18.2106;AC=2;AF=0.333333;AN=6;AO=7;CIGAR=1X;DP=32;DPB=32;DPRA=3.5;EPP=18.2106;EPPR=55.1256;GTI=0;LEN=1;MEANALT=1.5;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=269;QR=926;RO=24;RPL=0;RPP=18.2106;RPPR=55.1256;RPR=7;RUN=1;SAF=7;SAP=18.2106;SAR=0;SRF=24;SRP=55.1256;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:15:10,4:10:390:4:154:-9.8621,0,-31.118 0/1:13:10,3:10:382:3:115:-6.8115,0,-30.8219 0/0:4:4,0:4:154:0:0:0,-1.20412,-14.2335 dDocent_Contig_10500 12 . T C 209.927 . AB=0.217391;ABP=34.9215;AC=1;AF=0.25;AN=4;AO=11;CIGAR=1X;DP=67;DPB=67;DPRA=0;EPP=26.8965;EPPR=124.613;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=2;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=443;QR=2255;RO=56;RPL=0;RPP=26.8965;RPPR=124.613;RPR=11;RUN=1;SAF=11;SAP=26.8965;SAR=0;SRF=56;SRP=124.613;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:46:36,10:36:1460:10:402:-22.6916,0,-117.795 ./.:.:.:.:.:.:.:. 0/0:21:20,1:20:795:1:41:0,-2.22706,-67.7721 dDocent_Contig_10501 9 . G A 290.014 . AB=0.0784314;ABP=81.7368;AC=0;AF=0;AN=6;AO=4;CIGAR=1X3M2X;DP=138;DPB=138;DPRA=0;EPP=11.6962;EPPR=172.491;GTI=0;LEN=1;MEANALT=7;MQM=39;MQMR=59.7073;NS=3;NUMALT=4;ODDS=0;PAIRED=0;PAIREDR=0.817073;PAO=0;PQA=0;PQR=0;PRO=0;QA=159;QR=3185;RO=82;RPL=0;RPP=11.6962;RPPR=181.071;RPR=4;RUN=1;SAF=4;SAP=11.6962;SAR=0;SRF=81;SRP=172.491;SRR=1;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|0:60:30,0,9,12,5:30:1176:0,9,12,5:0,365,465,197:-24.4565,-33.4874,-130.209,-3.36669,-100.103,-97.394,0,-96.7199,-66.6141,-93.1075,-17.577,-114.304,-84.1967,-80.8147,-112.798 0|0:27:16,0,0,4,7:16:617:0,0,4,7:0,0,148,271:-8.03557,-12.852,-63.5262,-12.852,-63.5262,-63.5262,-1.96221,-52.6722,-52.6722,-51.4681,0,-50.6481,-50.6481,-39.8033,-48.5409 0|0:51:36,4,2,4,1:36:1392:4,2,4,1:159,81,158,38:-1.03973,-5.85951e-07,-113.137,-5.19247,-107.661,-118.937,0,-102.464,-107.661,-113.137,-10.0425,-112.501,-117.699,-112.501,-124.078 dDocent_Contig_10502 9 . G A 128.799 . AB=0.333333;ABP=7.35324;AC=2;AF=0.333333;AN=6;AO=6;CIGAR=1X;DP=33;DPB=33;DPRA=0.6;EPP=16.0391;EPPR=61.6401;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=234;QR=1040;RO=27;RPL=0;RPP=16.0391;RPPR=61.6401;RPR=6;RUN=1;SAF=6;SAP=16.0391;SAR=0;SRF=27;SRP=61.6401;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:15:15,0:15:582:0:0:0,-4.51545,-52.7231 0/1:10:8,2:8:303:2:78:-4.39317,0,-24.6182 0/1:8:4,4:4:155:4:156:-12.009,0,-11.9172 dDocent_Contig_10503 105 . T A 549.88 . AB=0.302326;ABP=32.1989;AC=3;AF=0.5;AN=6;AO=26;CIGAR=1X;DP=86;DPB=86;DPRA=0;EPP=59.4686;EPPR=133.299;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=0.423077;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=937;QR=2325;RO=60;RPL=26;RPP=59.4686;RPPR=133.299;RPR=0;RUN=1;SAF=0;SAP=59.4686;SAR=26;SRF=0;SRP=133.299;SRR=60;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:59:40,19:40:1563:19:704:-45.9227,0,-123.155 0/1:8:3,5:3:108:5:163:-12.5761,0,-7.66245 0/1:19:17,2:17:654:2:70:-0.925913,0,-53.458 dDocent_Contig_10504 7 . C T 56.6854 . AB=0.210526;ABP=16.8392;AC=2;AF=0.333333;AN=6;AO=4;CIGAR=1X;DP=36;DPB=36;DPRA=0.558824;EPP=11.6962;EPPR=72.4974;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=156;QR=1227;RO=32;RPL=0;RPP=11.6962;RPPR=72.4974;RPR=4;RUN=1;SAF=4;SAP=11.6962;SAR=0;SRF=32;SRP=72.4974;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:17:17,0:17:653:0:0:0,-5.11751,-59.1061 0/1:6:5,1:5:193:1:39:-2.09038,0,-15.9352 0/1:13:10,3:10:381:3:117:-6.99699,0,-30.7316 dDocent_Contig_10505 25 . G A 467.772 . AB=0.6;ABP=5.18177;AC=4;AF=0.666667;AN=6;AO=16;CIGAR=1X;DP=26;DPB=26;DPRA=0;EPP=37.7539;EPPR=24.725;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=0.8125;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=630;QR=397;RO=10;RPL=0;RPP=37.7539;RPPR=24.725;RPR=16;RUN=1;SAF=16;SAP=37.7539;SAR=0;SRF=10;SRP=24.725;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:13:5,8:5:204:8:318:-25.0704,0,-14.8306 0/1:12:5,7:5:193:7:272:-21.2333,0,-14.1264 1/1:1:0,1:0:0:1:40:-3.99568,-0.30103,0 dDocent_Contig_10506 121 . T A 98.3825 . AB=0.194444;ABP=32.2045;AC=2;AF=0.5;AN=4;AO=7;CIGAR=1X;DP=36;DPB=36;DPRA=0;EPP=18.2106;EPPR=65.983;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=2;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=243;QR=997;RO=29;RPL=0;RPP=18.2106;RPPR=65.983;RPR=7;RUN=1;SAF=0;SAP=18.2106;SAR=7;SRF=0;SRP=65.983;SRR=29;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:25:19,6:19:641:6:208:-11.5339,0,-50.4769 ./.:.:.:.:.:.:.:. 0/1:11:10,1:10:356:1:35:-0.187299,0,-29.07 dDocent_Contig_10509 57 . T A 402.208 . AB=0.181818;ABP=41.702;AC=1;AF=0.166667;AN=6;AO=8;CIGAR=2X9M;DP=46;DPB=40.5455;DPRA=11;EPP=20.3821;EPPR=52.9542;GTI=0;LEN=1;MEANALT=2;MQM=60;MQMR=60;NS=3;NUMALT=2;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=304;QR=828;RO=23;RPL=8;RPP=20.3821;RPPR=52.9542;RPR=0;RUN=1;SAF=8;SAP=20.3821;SAR=0;SRF=23;SRP=52.9542;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|1:24:11,6,7:11:404:6,7:232,266:-18.4928,-2.7468,-33.9579,0,-13.9515,-30.9053 0|0:20:12,7,1:12:424:7,1:260,38:-17.6581,0,-32.3963,-18.1528,-31.3849,-52.3684 0|0:2:0,2,0:0:0:2,0:80,0:-7.59179,-0.60206,0,-7.59179,-0.60206,-7.59179 dDocent_Contig_10510 21 . G T 32.4408 . AB=0.2;ABP=10.8276;AC=1;AF=0.166667;AN=6;AO=2;CIGAR=1X1M1X;DP=38;DPB=38;DPRA=0.714286;EPP=7.35324;EPPR=76.8404;GTI=0;LEN=1;MEANALT=2;MQM=60;MQMR=60;NS=3;NUMALT=2;ODDS=0;PAIRED=0;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=82;QR=1339;RO=34;RPL=0;RPP=7.35324;RPPR=76.8404;RPR=2;RUN=1;SAF=2;SAP=7.35324;SAR=0;SRF=34;SRP=76.8404;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|0:18:18,0,0:18:711:0,0:0,0:0,-5.41854,-64.3165,-5.41854,-64.3165,-64.3165 0|1:10:6,2,2:6:238:2,2:82,81:-4.96445,0,-18.9832,-0.0939437,-12.904,-19.0734 0|0:10:10,0,0:10:390:0,0:0,0:0,-3.0103,-35.4569,-3.0103,-35.4569,-35.4569 dDocent_Contig_10513 16 . T A 51.8574 . AB=0.125;ABP=61.6401;AC=1;AF=0.25;AN=4;AO=7;CIGAR=1X;DP=70;DPB=70;DPRA=0;EPP=18.2106;EPPR=139.813;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=2;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=274;QR=2544;RO=63;RPL=0;RPP=18.2106;RPPR=139.813;RPR=7;RUN=1;SAF=7;SAP=18.2106;SAR=0;SRF=63;SRP=139.813;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:48:42,6:42:1698:6:233:-6.8847,0,-138.589 ./.:.:.:.:.:.:.:. 0/0:22:21,1:21:846:1:41:0,-2.52809,-72.3552 dDocent_Contig_10514 18 . G A 2547.63 . AB=0.0922509;ABP=394.364;AC=0;AF=0;AN=6;AO=25;CIGAR=1X2M2X;DP=271;DPB=271;DPRA=0;EPP=57.2971;EPPR=261.416;GTI=0;LEN=1;MEANALT=3.66667;MQM=60;MQMR=60;NS=3;NUMALT=3;ODDS=0;PAIRED=1;PAIREDR=0.991597;PAO=0;PQA=0;PQR=0;PRO=0;QA=976;QR=4700;RO=119;RPL=0;RPP=57.2971;RPPR=261.416;RPR=25;RUN=1;SAF=25;SAP=57.2971;SAR=0;SRF=119;SRP=261.416;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|0:176:90,10,50,25:90:3568:10,50,25:395,1965,900:-134.533,-129.121,-419.812,0,-261.21,-278.662,-89.3133,-350.505,-221.398,-375.482 0|0:16:3,1,4,8:3:122:1,4,8:39,162,279:-24.494,-22.1891,-31.9601,-12.0209,-18.8906,-20.8949,-3.29459,-10.1556,0,-10.9513 0|0:79:26,14,4,34:26:1010:14,4,34:542,151,1327:-101.259,-64.5657,-143.338,-96.7127,-135.179,-178.495,0,-38.469,-70.6168,-72.7547 dDocent_Contig_10516 12 . T A 431.808 . AB=0.428571;ABP=3.63072;AC=1;AF=0.166667;AN=6;AO=6;CIGAR=1X3M1X;DP=43;DPB=43;DPRA=0;EPP=16.0391;EPPR=52.9542;GTI=0;LEN=1;MEANALT=2;MQM=60;MQMR=60;NS=3;NUMALT=2;ODDS=6.93889e-18;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=231;QR=926;RO=23;RPL=0;RPP=16.0391;RPPR=52.9542;RPR=6;RUN=1;SAF=6;SAP=16.0391;SAR=0;SRF=23;SRP=52.9542;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|0:16:11,0,5:11:440:0,5:0,200:-13.5626,-16.8739,-53.1192,0,-36.6449,-35.1397 0|0:13:7,0,6:7:283:0,6:0,236:-17.6963,-19.8035,-43.1417,0,-23.7362,-21.93 0|1:14:5,6,3:5:203:6,3:231,122:-17.4448,0,-14.9358,-8.87956,-6.6785,-24.7284 dDocent_Contig_10518 20 . G A 1925.38 . AB=0.640625;ABP=14.0034;AC=4;AF=0.666667;AN=6;AO=60;CIGAR=1X;DP=83;DPB=83;DPRA=0;EPP=133.299;EPPR=52.9542;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=0.933333;PAIREDR=0.913043;PAO=0;PQA=0;PQR=0;PRO=0;QA=2382;QR=919;RO=23;RPL=0;RPP=133.299;RPPR=52.9542;RPR=60;RUN=1;SAF=60;SAP=133.299;SAR=0;SRF=23;SRP=52.9542;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:41:13,28:13:513:28:1110:-87.8442,0,-34.1708 1/1:19:0,19:0:0:19:760:-68.7192,-5.71957,0 0/1:23:10,13:10:406:13:512:-39.4974,0,-29.9767 dDocent_Contig_10519 21 . G T 286.467 . AB=0.25;ABP=33.4109;AC=3;AF=0.5;AN=6;AO=14;CIGAR=1X1M2X1M2I2M;DP=56;DPB=60;DPRA=0;EPP=33.4109;EPPR=94.2121;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=543;QR=1669;RO=42;RPL=0;RPP=33.4109;RPPR=94.2121;RPR=14;RUN=1;SAF=14;SAP=33.4109;SAR=0;SRF=42;SRP=94.2121;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|1:11:6,5:6:243:5:190:-14.1556,0,-18.9368 0|1:12:6,6:6:229:6:236:-18.0005,0,-17.3628 0|1:33:30,3:30:1197:3:117:-0.976222,0,-98.0788 dDocent_Contig_10520 1 . N A 1286.68 . AB=0;ABP=0;AC=6;AF=1;AN=6;AO=41;CIGAR=1X;DP=41;DPB=41;DPRA=0;EPP=92.0407;EPPR=0;GTI=0;LEN=1;MEANALT=1;MQM=59.7561;MQMR=0;NS=3;NUMALT=1;ODDS=0;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=1412;QR=0;RO=0;RPL=0;RPP=92.0407;RPPR=0;RPR=41;RUN=1;SAF=0;SAP=92.0407;SAR=41;SRF=0;SRP=0;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 1/1:19:0,19:0:0:19:650:-58.8215,-5.71957,0 1/1:9:0,9:0:0:9:314:-28.5979,-2.70927,0 1/1:13:0,13:0:0:13:448:-40.6462,-3.91339,0 dDocent_Contig_10521 195 . A C 1648.69 . AB=0.73913;ABP=37.2818;AC=4;AF=0.666667;AN=6;AO=56;CIGAR=1X;DP=74;DPB=74;DPRA=0;EPP=124.613;EPPR=42.0968;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=3.46945e-18;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=2091;QR=670;RO=18;RPL=56;RPP=124.613;RPPR=42.0968;RPR=0;RUN=1;SAF=0;SAP=124.613;SAR=56;SRF=0;SRP=42.0968;SRR=18;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:37:12,25:12:439:25:943:-74.0463,0,-28.7098 1/1:5:0,5:0:0:5:181:-16.6422,-1.50515,0 0/1:32:6,26:6:231:26:967:-77.7038,0,-11.5245 dDocent_Contig_10522 7 . C T 307.622 . AB=0.269231;ABP=27.0635;AC=3;AF=0.5;AN=6;AO=14;CIGAR=1X6M;DP=52;DPB=52;DPRA=0;EPP=33.4109;EPPR=55.1256;GTI=0;LEN=1;MEANALT=3;MQM=56.2857;MQMR=60;NS=3;NUMALT=4;ODDS=0;PAIRED=0.142857;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=531;QR=942;RO=24;RPL=0;RPP=33.4109;RPPR=55.1256;RPR=14;RUN=1;SAF=14;SAP=33.4109;SAR=0;SRF=24;SRP=55.1256;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|1:26:11,4,3,2,6:11:437:4,3,2,6:70,117,69,219:-14.0907,-13.4215,-48.2295,-11.0899,-43.1335,-46.2194,-11.7864,-43.8299,-41.5162,-47.2207,0,-32.0845,-29.7642,-30.4617,-34.2637 0|1:7:3,0,0,0,4:3:120:0,0,0,4:0,0,0,156:-12.3101,-13.2132,-23.1027,-13.2132,-23.1027,-23.1027,-13.2132,-23.1027,-23.1027,-23.1027,0,-10.2848,-10.2848,-10.2848,-9.08069 0|1:19:10,2,2,1,4:10:385:2,2,1,4:38,79,39,156:-9.88431,-10.6538,-41.6872,-9.57375,-38.9648,-40.6171,-9.67762,-39.082,-38.0114,-41.0392,0,-29.4587,-28.3865,-28.5032,-30.509 dDocent_Contig_10524 30 . C A 30.4082 . AB=0.111111;ABP=85.7675;AC=2;AF=0.333333;AN=6;AO=7;CIGAR=1X;DP=95;DPB=95;DPRA=0.984375;EPP=18.2106;EPPR=191.928;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=3.46945e-18;PAIRED=0;PAIREDR=0.241379;PAO=0;PQA=0;PQR=0;PRO=0;QA=274;QR=3464;RO=87;RPL=0;RPP=18.2106;RPPR=191.928;RPR=7;RUN=1;SAF=7;SAP=18.2106;SAR=0;SRF=87;SRP=191.928;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:32:31,0:31:1247:0:0:0,-9.33193,-112.131 0/1:30:27,3:27:1066:3:119:-2.06449,0,-87.1985 0/1:33:29,4:29:1151:4:155:-4.38866,0,-93.9389 dDocent_Contig_10525 7 . C A 3261.99 . AB=0.373134;ABP=49.8428;AC=3;AF=0.5;AN=6;AO=125;CIGAR=2X2M1X;DP=335;DPB=335;DPRA=0;EPP=274.444;EPPR=454.677;GTI=0;LEN=1;MEANALT=1.66667;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=0.966346;PAO=0;PQA=0;PQR=0;PRO=0;QA=4793;QR=8023;RO=208;RPL=0;RPP=274.444;RPPR=454.677;RPR=125;RUN=1;SAF=125;SAP=274.444;SAR=0;SRF=208;SRP=454.677;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|1:228:129,97:129:4971:97:3716:-266.318,0,-379.169 0|1:14:5,9:5:191:9:339:-26.6493,0,-13.3442 0|1:93:74,19:74:2861:19:738:-38.7552,0,-229.665 dDocent_Contig_10526 55 . G C 50.3274 . AB=0.210526;ABP=16.8392;AC=1;AF=0.166667;AN=6;AO=5;CIGAR=1X;DP=42;DPB=42;DPRA=1.25;EPP=13.8677;EPPR=83.3548;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=163;QR=1224;RO=37;RPL=0;RPP=13.8677;RPPR=83.3548;RPR=5;RUN=1;SAF=0;SAP=13.8677;SAR=5;SRF=0;SRP=83.3548;SRR=37;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:11:10,1:10:330:1:27:0,-0.611547,-27.3208 0/0:12:12,0:12:382:0:0:0,-3.61236,-34.6871 0/1:19:15,4:15:512:4:136:-6.85629,0,-40.6858 dDocent_Contig_10529 97 . A T 248.428 . AB=0.358974;ABP=9.74743;AC=3;AF=0.5;AN=6;AO=14;CIGAR=1X;DP=39;DPB=39;DPRA=0;EPP=33.4109;EPPR=57.2971;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=457;QR=867;RO=25;RPL=14;RPP=33.4109;RPPR=57.2971;RPR=0;RUN=1;SAF=14;SAP=33.4109;SAR=0;SRF=25;SRP=57.2971;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:21:14,7:14:482:7:240:-15.6137,0,-37.3871 0/1:9:4,5:4:140:5:147:-10.8121,0,-10.2357 0/1:9:7,2:7:245:2:70:-3.93813,0,-19.682 dDocent_Contig_10530 8 . T C 1088.73 . AB=0.0555556;ABP=250.076;AC=0;AF=0;AN=6;AO=8;CIGAR=2X1M1X1M1X;DP=192;DPB=192.333;DPRA=0;EPP=20.3821;EPPR=250.558;GTI=0;LEN=1;MEANALT=7.5;MQM=42;MQMR=55.7368;NS=3;NUMALT=4;ODDS=0;PAIRED=0;PAIREDR=0.131579;PAO=0;PQA=0;PQR=0;PRO=0;QA=308;QR=4493;RO=114;RPL=0;RPP=20.3821;RPPR=250.558;RPR=8;RUN=1;SAF=8;SAP=20.3821;SAR=0;SRF=114;SRP=250.558;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|0:48:29,3,1,0,13:29:1146:3,1,0,13:117,39,0,515:-32.3464,-32.266,-125.034,-37.8821,-122.744,-131.255,-41.0763,-125.937,-131.556,-134.75,0,-84.8713,-90.4891,-93.6828,-89.7694 0|0:79:46,0,4,2,20:46:1800:0,4,2,20:0,158,77,773:-47.9716,-61.819,-208.381,-48.8128,-195.379,-194.174,-56.2925,-202.854,-189.852,-202.252,0,-146.583,-133.58,-141.057,-140.563 0|0:65:39,1,1,6,14:39:1547:1,1,6,14:38,40,231,570:-34.0773,-45.5913,-172.206,-42.5367,-169.227,-169.159,-27.4514,-154.143,-151.096,-152.57,0,-126.715,-123.667,-108.583,-122.733 dDocent_Contig_10531 12 . A T 2041.19 . AB=0.0786517;ABP=140.252;AC=0;AF=0;AN=6;AO=7;CIGAR=1X1M1X4M;DP=124;DPB=124;DPRA=0;EPP=18.2106;EPPR=83.3548;GTI=0;LEN=1;MEANALT=2.5;MQM=60;MQMR=60;NS=3;NUMALT=4;ODDS=0;PAIRED=1;PAIREDR=0.945946;PAO=0;PQA=0;PQR=0;PRO=0;QA=280;QR=1448;RO=37;RPL=0;RPP=18.2106;RPPR=83.3548;RPR=7;RUN=1;SAF=7;SAP=18.2106;SAR=0;SRF=37;SRP=83.3548;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|0:54:19,5,0,0,30:19:749:5,0,0,30:201,0,0,1171:-90.5198,-79.6735,-139.793,-96.2394,-141.298,-157.863,-96.2394,-141.298,-157.863,-157.863,0,-45.0509,-61.6167,-61.6167,-52.5858 0|0:35:4,0,4,4,22:4:153:0,4,4,22:0,155,135,874:-70.9518,-72.1559,-84.7093,-59.4219,-71.9753,-70.7712,-61.2239,-73.7763,-61.0432,-72.5722,-0.182174,-12.7418,0,-1.8167,-6.1191 0|0:35:14,2,0,3,16:14:546:2,0,3,16:79,0,102,635:-48.082,-45.7948,-90.0724,-52.2965,-90.6744,-97.1758,-44.0308,-82.4055,-88.9066,-88.0035,0,-38.3968,-44.8992,-36.6334,-40.0827 dDocent_Contig_10532 24 . G T 479.306 . AB=0.5;ABP=3.0103;AC=3;AF=0.5;AN=6;AO=18;CIGAR=1X;DP=36;DPB=36;DPRA=0;EPP=42.0968;EPPR=42.0968;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=702;QR=678;RO=18;RPL=0;RPP=42.0968;RPPR=42.0968;RPR=18;RUN=1;SAF=18;SAP=42.0968;SAR=0;SRF=18;SRP=42.0968;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:15:8,7:8:299:7:268:-19.9661,0,-22.7482 0/1:11:6,5:6:226:5:197:-14.794,0,-17.39 0/1:10:4,6:4:153:6:237:-18.6934,0,-11.1306 dDocent_Contig_10533 75 . T C 109.057 . AB=0.18;ABP=47.4821;AC=3;AF=0.5;AN=6;AO=9;CIGAR=1X;DP=50;DPB=50;DPRA=0;EPP=22.5536;EPPR=92.0407;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=304;QR=1371;RO=41;RPL=9;RPP=22.5536;RPPR=92.0407;RPR=0;RUN=1;SAF=9;SAP=22.5536;SAR=0;SRF=41;SRP=92.0407;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:31:24,7:24:810:7:238:-12.4207,0,-63.88 0/1:9:8,1:8:261:1:31:-0.390184,0,-21.1002 0/1:10:9,1:9:300:1:35:-0.488329,0,-24.3141 dDocent_Contig_10534 57 . A T 499.92 . AB=0.428571;ABP=4.87156;AC=2;AF=0.333333;AN=6;AO=18;CIGAR=1X;DP=47;DPB=47;DPRA=4.2;EPP=42.0968;EPPR=65.983;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=3.46945e-18;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=727;QR=1128;RO=29;RPL=18;RPP=42.0968;RPPR=65.983;RPR=0;RUN=1;SAF=18;SAP=42.0968;SAR=0;SRF=29;SRP=65.983;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:25:13,12:13:509:12:485:-36.475,0,-38.6281 0/0:5:5,0:5:182:0:0:0,-1.50515,-16.7293 0/1:17:11,6:11:437:6:242:-17.0398,0,-34.5639 dDocent_Contig_10536 160 . A G 208.345 . AB=0.3;ABP=9.95901;AC=3;AF=0.5;AN=6;AO=8;CIGAR=1X1M1X;DP=38;DPB=38;DPRA=0.6875;EPP=20.3821;EPPR=68.1545;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=307;QR=1169;RO=30;RPL=8;RPP=20.3821;RPPR=68.1545;RPR=0;RUN=1;SAF=0;SAP=20.3821;SAR=8;SRF=0;SRP=68.1545;SRR=30;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|1:20:14,6:14:541:6:229:-14.9537,0,-43.0115 1|1:2:0,2:0:0:2:78:-7.4033,-0.60206,0 0|0:16:16,0:16:628:0:0:0,-4.81648,-56.8565 dDocent_Contig_10537 46 . T C 808.187 . AB=0.638298;ABP=10.8184;AC=2;AF=0.333333;AN=6;AO=30;CIGAR=1X;DP=56;DPB=56;DPRA=2.61111;EPP=68.1545;EPPR=51.1168;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=58.4231;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=0.961538;PAO=0;PQA=0;PQR=0;PRO=0;QA=1087;QR=978;RO=26;RPL=0;RPP=68.1545;RPPR=51.1168;RPR=30;RUN=1;SAF=30;SAP=68.1545;SAR=0;SRF=26;SRP=59.4686;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:35:14,21:14:537:21:756:-57.8133,0,-38.1359 0/0:9:9,0:9:330:0:0:0,-2.70927,-28.3951 0/1:12:3,9:3:111:9:331:-26.5283,0,-6.74156 dDocent_Contig_10538 43 . C G 1507.87 . AB=0.62963;ABP=14.8328;AC=3;AF=0.5;AN=6;AO=51;CIGAR=1X;DP=81;DPB=81;DPRA=0;EPP=113.755;EPPR=68.1545;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=1997;QR=1202;RO=30;RPL=51;RPP=113.755;RPPR=68.1545;RPR=0;RUN=1;SAF=51;SAP=113.755;SAR=0;SRF=30;SRP=68.1545;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:39:10,29:10:409:29:1149:-91.9495,0,-25.4304 0/1:25:16,9:16:630:9:325:-22.0611,0,-49.5042 0/1:17:4,13:4:163:13:523:-42.2997,0,-9.94092 dDocent_Contig_10539 7 . C A 232.637 . AB=0.0769231;ABP=43.4331;AC=1;AF=0.166667;AN=6;AO=2;CIGAR=1X3M3X3M1X3M1X3M;DP=82;DPB=83.5556;DPRA=0;EPP=7.35324;EPPR=57.2971;GTI=0;LEN=1;MEANALT=7;MQM=16;MQMR=60;NS=3;NUMALT=7;ODDS=0;PAIRED=0;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=32;QR=972;RO=25;RPL=0;RPP=7.35324;RPPR=57.2971;RPR=2;RUN=1;SAF=2;SAP=7.35324;SAR=0;SRF=25;SRP=57.2971;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|1:47:13,1,2,4,0,0,22,0:13:501:1,2,4,0,0,22,0:39,78,154,0,0,870,0:-8.71583,-9.41675,-50.3137,-6.20386,-44.1956,-46.8032,0,-37.9988,-34.7886,-40.0047,-12.6292,-50.6147,-47.4052,-41.2088,-53.824,-12.6292,-50.6147,-47.4052,-41.2088,-53.824,-53.824,-5.58307,-43.5258,-40.3191,-34.1293,-46.7324,-46.7324,-40.1097,-12.6292,-50.6147,-47.4052,-41.2088,-53.824,-53.824,-46.7324,-53.824 0|0:9:6,0,0,0,0,0,1,2:6:236:0,0,0,0,0,1,2:0,0,0,0,0,40,81:-5.096,-6.90218,-26.3823,-6.90218,-26.3823,-26.3823,-6.90218,-26.3823,-26.3823,-26.3823,-6.90218,-26.3823,-26.3823,-26.3823,-26.3823,-6.90218,-26.3823,-26.3823,-26.3823,-26.3823,-26.3823,-6.68488,-26.0897,-26.0897,-26.0897,-26.0897,-26.0897,-25.7887,0,-19.6903,-19.6903,-19.6903,-19.6903,-19.6903,-19.4077,-19.0883 0|0:26:6,2,2,0,2,3,5,5:6:235:2,2,0,2,3,5,5:79,76,0,32,123,201,203:-14.9747,-10.2683,-29.0189,-10.538,-23.3814,-29.2882,-16.7808,-29.6209,-29.8902,-36.1286,-15.0526,-27.891,-28.1604,-34.3979,-33.7959,-6.60755,-19.454,-19.7235,-25.9639,-24.2342,-25.0608,-15.2101,-28.0391,-28.3088,-34.5425,-32.8219,-24.384,-33.0374,0,-12.8525,-13.1222,-19.3643,-17.6353,-9.19246,-17.7895,-17.8592 dDocent_Contig_10540 37 . G A 227.554 . AB=0.203125;ABP=52.0041;AC=3;AF=0.5;AN=6;AO=13;CIGAR=1X;DP=64;DPB=64;DPRA=0;EPP=31.2394;EPPR=113.755;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=506;QR=2041;RO=51;RPL=0;RPP=31.2394;RPPR=113.755;RPR=13;RUN=1;SAF=13;SAP=31.2394;SAR=0;SRF=51;SRP=113.755;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:33:24,9:24:965:9:343:-21.2813,0,-77.2163 0/1:9:7,2:7:280:2:81:-4.97646,0,-22.8614 0/1:22:20,2:20:796:2:82:-1.15702,0,-65.3337 dDocent_Contig_10542 46 . T C 493.259 . AB=0.333333;ABP=16.763;AC=1;AF=0.25;AN=4;AO=19;CIGAR=1X;DP=82;DPB=82;DPRA=2.28;EPP=44.2683;EPPR=137.642;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=59.5484;NS=2;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=0.935484;PAO=0;PQA=0;PQR=0;PRO=0;QA=754;QR=2215;RO=62;RPL=0;RPP=44.2683;RPPR=137.642;RPR=19;RUN=1;SAF=19;SAP=44.2683;SAR=0;SRF=62;SRP=137.642;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:57:38,19:38:1345:19:754:-51.0249,0,-104.137 ./.:.:.:.:.:.:.:. 0/0:25:24,0:24:870:0:0:0,-7.22472,-78.5206 dDocent_Contig_10544 17 . T A 1894.61 . AB=0.366071;ABP=20.4596;AC=2;AF=0.333333;AN=6;AO=41;CIGAR=4M1X2M;DP=112;DPB=105.857;DPRA=0;EPP=92.0407;EPPR=61.6401;GTI=0;LEN=1;MEANALT=2.33333;MQM=60;MQMR=60;NS=3;NUMALT=2;ODDS=2.77556e-17;PAIRED=0.780488;PAIREDR=0.888889;PAO=0;PQA=0;PQR=0;PRO=0;QA=1625;QR=1054;RO=27;RPL=0;RPP=92.0407;RPPR=61.6401;RPR=41;RUN=1;SAF=41;SAP=92.0407;SAR=0;SRF=27;SRP=61.6401;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|1:66:11,28,27:11:435:28,27:1083,1067:-137.63,-51.9957,-79.366,-53.1424,0,-80.8161 0|0:27:12,8,6:12:467:8,6:314,235:-22.2106,0,-35.9671,-6.50186,-19.0529,-43.0712 0|1:19:4,7,8:4:152:7,8:270,323:-35.1433,-14.186,-24.536,-9.71046,0,-19.7652 dDocent_Contig_10545 15 . C T 140.148 . AB=0.352941;ABP=6.20364;AC=2;AF=0.333333;AN=6;AO=6;CIGAR=1X;DP=26;DPB=26;DPRA=0.944444;EPP=3.0103;EPPR=46.4397;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=0;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=243;QR=799;RO=20;RPL=0;RPP=16.0391;RPPR=46.4397;RPR=6;RUN=1;SAF=3;SAP=3.0103;SAR=3;SRF=20;SRP=46.4397;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:9:9,0:9:354:0:0:0,-2.70927,-32.2204 0/1:11:7,4:7:284:4:161:-11.5642,0,-22.6227 0/1:6:4,2:4:161:2:82:-5.9735,0,-13.0687 dDocent_Contig_10546 31 . T A 115.436 . AB=0.333333;ABP=5.9056;AC=3;AF=0.5;AN=6;AO=4;CIGAR=1X4M;DP=19;DPB=19;DPRA=0;EPP=11.6962;EPPR=31.2394;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=2;ODDS=1.73472e-18;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=162;QR=508;RO=13;RPL=0;RPP=11.6962;RPPR=31.2394;RPR=4;RUN=1;SAF=4;SAP=11.6962;SAR=0;SRF=13;SRP=31.2394;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|1:9:7,0,2:7:276:0,2:0,81:-4.97646,-7.08367,-29.7819,0,-23.1003,-22.4983 0|1:3:1,0,2:1:40:0,2:0,81:-6.78264,-7.08367,-10.3771,0,-3.69465,-3.09259 0|1:7:5,2,0:5:192:2,0:78,0:-5.29557,0,-15.5416,-6.80072,-16.1437,-22.5565 dDocent_Contig_10548 30 . A G 475.74 . AB=0.382979;ABP=8.60069;AC=3;AF=0.5;AN=6;AO=18;CIGAR=1X;DP=47;DPB=47;DPRA=0;EPP=42.0968;EPPR=65.983;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=720;QR=1170;RO=29;RPL=0;RPP=42.0968;RPPR=65.983;RPR=18;RUN=1;SAF=18;SAP=42.0968;SAR=0;SRF=29;SRP=65.983;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:11:10,1:10:405:1:40:-0.684349,0,-33.4987 0/1:11:5,6:5:203:6:237:-18.3916,0,-15.3417 0/1:25:14,11:14:562:11:443:-32.6984,0,-43.3953 dDocent_Contig_10549 16 . T C 94.7106 . AB=0.227273;ABP=17.2236;AC=2;AF=0.333333;AN=6;AO=5;CIGAR=1X;DP=40;DPB=40;DPRA=0.611111;EPP=13.8677;EPPR=79.0118;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=0.885714;PAO=0;PQA=0;PQR=0;PRO=0;QA=198;QR=1394;RO=35;RPL=0;RPP=13.8677;RPPR=79.0118;RPR=5;RUN=1;SAF=5;SAP=13.8677;SAR=0;SRF=35;SRP=79.0118;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:18:18,0:18:714:0:0:0,-5.41854,-64.5866 0/1:11:7,4:7:284:4:158:-11.288,0,-22.6225 0/1:11:10,1:10:396:1:40:-0.684349,0,-32.6855 dDocent_Contig_10550 107 . N T 41.9418 . AB=0;ABP=0;AC=2;AF=1;AN=2;AO=3;CIGAR=1X2I1X3M1X3M1X;DP=3;DPB=3.6;DPRA=0;EPP=9.52472;EPPR=0;GTI=0;LEN=1;MEANALT=1;MQM=15;MQMR=0;NS=1;NUMALT=1;ODDS=6.68461;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=113;QR=0;RO=0;RPL=0;RPP=9.52472;RPPR=0;RPR=3;RUN=1;SAF=3;SAP=9.52472;SAR=0;SRF=0;SRP=0;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL .:.:.:.:.:.:.:. 1|1:3:0,3:0:0:3:113:-4.19361,-0.90309,0 .:.:.:.:.:.:.:. dDocent_Contig_10551 22 . A G 477.593 . AB=0.363636;ABP=11.8936;AC=3;AF=0.5;AN=6;AO=20;CIGAR=1X;DP=55;DPB=55;DPRA=0;EPP=46.4397;EPPR=79.0118;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=764;QR=1399;RO=35;RPL=0;RPP=46.4397;RPPR=79.0118;RPR=20;RUN=1;SAF=20;SAP=46.4397;SAR=0;SRF=35;SRP=79.0118;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:24:20,4:20:791:4:153:-6.9123,0,-64.2795 0/1:10:4,6:4:160:6:237:-18.6923,0,-11.7731 0/1:21:11,10:11:448:10:374:-27.6775,0,-34.3541 dDocent_Contig_10552 10 . G A 3187.75 . AB=0.0349418;ABP=1132.04;AC=0;AF=0;AN=6;AO=21;CIGAR=1X3M1X2M2D9M1X3M1X;DP=601;DPB=563.304;DPRA=0;EPP=48.6112;EPPR=107.241;GTI=0;LEN=1;MEANALT=41.3333;MQM=59.5714;MQMR=60;NS=3;NUMALT=4;ODDS=2.22045e-16;PAIRED=1;PAIREDR=1;PAO=25.6667;PQA=890.667;PQR=74.5;PRO=2.5;QA=826;QR=1875;RO=48;RPL=0;RPP=48.6112;RPPR=107.241;RPR=21;RUN=1;SAF=21;SAP=48.6112;SAR=0;SRF=48;SRP=107.241;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|0:253:27,14,72,31,13:27:1067:14,72,31,13:551,1772,1149,510:-121.797,-84.616,-168.221,-4.69165,-47.2026,-70.8362,-37.411,-79.9229,0,-115.9,-87.9776,-130.489,-50.5642,-83.2845,-171.883 0|0:154:9,1,75,2,2:9:353:1,75,2,2:38,1676,77,81:-113.563,-113.155,-141.892,0,-25.9223,-6.46235,-110.108,-136.029,-22.875,-138.544,-109.591,-135.512,-22.3581,-132.465,-138.027 0|0:194:12,6,78,3,4:12:455:6,78,3,4:237,1438,111,153:-88.9378,-73.0413,-108.546,0,-17.8031,-13.8323,-83.8082,-101.61,-28.5707,-120.216,-79.9936,-97.7959,-24.7559,-108.563,-116.1 dDocent_Contig_10553 10 . G T 485.031 . AB=0.514286;ABP=3.07234;AC=3;AF=0.5;AN=6;AO=18;CIGAR=3X;DP=35;DPB=35;DPRA=0;EPP=42.0968;EPPR=39.9253;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=705;QR=664;RO=17;RPL=0;RPP=42.0968;RPPR=39.9253;RPR=18;RUN=1;SAF=18;SAP=42.0968;SAR=0;SRF=17;SRP=39.9253;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|1:18:9,9:9:358:9:347:-26.1625,0,-27.1648 0|1:11:6,5:6:226:5:196:-14.7027,0,-17.3902 0|1:6:2,4:2:80:4:162:-13.1608,0,-5.78561 dDocent_Contig_10554 98 . N T 42.4499 . AB=0;ABP=0;AC=2;AF=1;AN=2;AO=3;CIGAR=1X;DP=3;DPB=3;DPRA=0;EPP=9.52472;EPPR=0;GTI=0;LEN=1;MEANALT=1;MQM=15.3333;MQMR=0;NS=1;NUMALT=1;ODDS=6.68461;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=112;QR=0;RO=0;RPL=0;RPP=9.52472;RPPR=0;RPR=3;RUN=1;SAF=3;SAP=9.52472;SAR=0;SRF=0;SRP=0;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 1/1:3:0,3:0:0:3:112:-4.24443,-0.90309,0 ./.:.:.:.:.:.:.:. ./.:.:.:.:.:.:.:. dDocent_Contig_10555 11 . G A 1090.45 . AB=0.0526316;ABP=69.0688;AC=0;AF=0;AN=6;AO=2;CIGAR=1X1M1X;DP=65;DPB=65;DPRA=0;EPP=7.35324;EPPR=57.2971;GTI=0;LEN=1;MEANALT=2;MQM=60;MQMR=60;NS=3;NUMALT=2;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=82;QR=999;RO=25;RPL=0;RPP=7.35324;RPPR=57.2971;RPR=2;RUN=1;SAF=2;SAP=7.35324;SAR=0;SRF=25;SRP=57.2971;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|0:38:7,2,29:7:278:2,29:82,1166:-93.9734,-89.312,-111.596,0,-16.1057,-14.1468 0|0:6:1,0,5:1:40:0,5:0,203:-16.8469,-17.1479,-20.442,0,-3.69465,-2.1895 0|0:21:17,0,3:17:681:0,3:0,108:-3.6605,-8.77801,-64.9064,0,-56.1043,-55.2012 dDocent_Contig_10556 15 . T G 473.854 . AB=0.237113;ABP=61.2371;AC=3;AF=0.5;AN=6;AO=23;CIGAR=1X;DP=97;DPB=97;DPRA=0;EPP=52.9542;EPPR=161.528;GTI=0;LEN=1;MEANALT=1.33333;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=901;QR=2933;RO=73;RPL=0;RPP=52.9542;RPPR=161.528;RPR=23;RUN=1;SAF=23;SAP=52.9542;SAR=0;SRF=73;SRP=161.528;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:57:41,15:41:1648:15:586:-35.8404,0,-131.311 0/1:13:9,4:9:360:4:158:-10.6871,0,-28.8504 0/1:27:23,4:23:925:4:157:-6.38078,0,-75.4246 dDocent_Contig_10557 10 . G A 325.419 . AB=0.0935252;ABP=202.489;AC=2;AF=0.333333;AN=6;AO=13;CIGAR=1M15I3M1X2M;DP=209;DPB=236.857;DPRA=0.992857;EPP=31.2394;EPPR=39.9253;GTI=0;LEN=1;MEANALT=3;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=0;PAIREDR=0.882353;PAO=0;PQA=0;PQR=0;PRO=0;QA=488;QR=656;RO=17;RPL=0;RPP=31.2394;RPPR=39.9253;RPR=13;RUN=1;SAF=13;SAP=31.2394;SAR=0;SRF=17;SRP=39.9253;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|1:75:6,7:6:229:7:262:-19.6527,0,-16.6822 0|1:64:7,6:7:271:6:226:-16.4119,0,-20.4563 0|0:70:4,0:4:156:0:0:0,-1.20412,-14.0287 dDocent_Contig_10558 17 . T C 1923.81 . AB=0.78481;ABP=58.6715;AC=3;AF=0.5;AN=6;AO=62;CIGAR=1X;DP=79;DPB=79;DPRA=0;EPP=137.642;EPPR=39.9253;GTI=0;LEN=1;MEANALT=1;MQM=59.9194;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=0.903226;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=2453;QR=662;RO=17;RPL=0;RPP=137.642;RPPR=39.9253;RPR=62;RUN=1;SAF=62;SAP=137.642;SAR=0;SRF=17;SRP=39.9253;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:45:7,38:7:278:38:1524:-123.849,0,-11.8446 0/1:16:4,12:4:154:12:441:-35.202,0,-9.41619 0/1:18:6,12:6:230:12:488:-38.8527,0,-15.6458 dDocent_Contig_10559 15 . A G 60.5207 . AB=0.272727;ABP=7.94546;AC=1;AF=0.166667;AN=6;AO=3;CIGAR=1X;DP=92;DPB=92;DPRA=0.271605;EPP=9.52472;EPPR=196.271;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=58.191;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=0.921348;PAO=0;PQA=0;PQR=0;PRO=0;QA=120;QR=3578;RO=89;RPL=0;RPP=9.52472;RPPR=196.271;RPR=3;RUN=1;SAF=3;SAP=9.52472;SAR=0;SRF=89;SRP=196.271;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:66:66,0:66:2663:0:0:0,-19.868,-238.564 0/1:11:8,3:8:323:3:120:-7.87598,0,-23.723 0/0:15:15,0:15:592:0:0:0,-4.51545,-53.6155 dDocent_Contig_10560 12 . C T 638.961 . AB=0.0632911;ABP=133.876;AC=1;AF=0.166667;AN=6;AO=5;CIGAR=1X2M;DP=79;DPB=79;DPRA=0;EPP=13.8677;EPPR=98.5551;GTI=0;LEN=1;MEANALT=3;MQM=60;MQMR=59.9091;NS=3;NUMALT=3;ODDS=0;PAIRED=1;PAIREDR=0.954545;PAO=0;PQA=0;PQR=0;PRO=0;QA=189;QR=1712;RO=44;RPL=0;RPP=13.8677;RPPR=98.5551;RPR=5;RUN=1;SAF=5;SAP=13.8677;SAR=0;SRF=44;SRP=98.5551;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|0:35:24,1,8,1:24:942:1,8,1:39,325,36:-19.4781,-23.4979,-100.658,0,-74.2664,-75.064,-23.7693,-98.0228,-74.536,-100.927 0|0:18:6,0,9,3:6:232:0,9,3:0,359,113:-27.7085,-29.5147,-48.5655,0,-19.0595,-16.3503,-20.2625,-39.3108,-9.80533,-38.4077 0|1:26:14,8,3,1:14:538:8,3,1:321,122,40:-22.2324,0,-41.7338,-16.3861,-34.0792,-59.6308,-23.152,-40.8463,-57.2384,-66.9987 dDocent_Contig_10561 41 . G A 217.218 . AB=0.666667;ABP=4.45795;AC=3;AF=0.5;AN=6;AO=7;CIGAR=1X;DP=10;DPB=10;DPRA=4.5;EPP=18.2106;EPPR=3.73412;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=51.6667;NS=3;NUMALT=1;ODDS=0;PAIRED=0;PAIREDR=0.333333;PAO=0;PQA=0;PQR=0;PRO=0;QA=270;QR=118;RO=3;RPL=0;RPP=18.2106;RPPR=9.52472;RPR=7;RUN=1;SAF=0;SAP=18.2106;SAR=7;SRF=2;SRP=3.73412;SRR=1;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:6:2,4:2:82:4:153:-12.3333,0,-5.9735 0/0:1:1,0:1:36:0:0:0,-0.30103,-3.24616 1/1:3:0,3:0:0:3:117:-10.9104,-0.90309,0 dDocent_Contig_10562 10 . G A 175.121 . AB=0.217391;ABP=34.9215;AC=1;AF=0.166667;AN=6;AO=17;CIGAR=1X;DP=272;DPB=272;DPRA=0;EPP=6.20364;EPPR=489.429;GTI=0;LEN=1;MEANALT=1;MQM=57.1176;MQMR=59.5961;NS=3;NUMALT=1;ODDS=6.93889e-18;PAIRED=0;PAIREDR=0.313725;PAO=0;PQA=0;PQR=0;PRO=0;QA=635;QR=10148;RO=255;RPL=0;RPP=39.9253;RPPR=556.736;RPR=17;RUN=1;SAF=11;SAP=6.20364;SAR=6;SRF=247;SRP=489.429;SRR=8;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:118:112,6:112:4489:6:230:0,-14.6694,-382.873 0/1:46:36,10:36:1424:10:365:-19.336,0,-114.348 0/0:108:107,1:107:4235:1:40:0,-28.5156,-377.12 dDocent_Contig_10564 174 . A C 321.507 . AB=0.444444;ABP=3.73412;AC=4;AF=0.666667;AN=6;AO=13;CIGAR=1X;DP=28;DPB=28;DPRA=0;EPP=31.2394;EPPR=35.5824;GTI=0;LEN=1;MEANALT=1;MQM=40;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=513;QR=611;RO=15;RPL=13;RPP=31.2394;RPPR=35.5824;RPR=0;RUN=1;SAF=0;SAP=31.2394;SAR=13;SRF=0;SRP=35.5824;SRR=15;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:19:10,9:10:406:9:355:-24.1523,0,-31.1805 0/1:8:5,3:5:205:3:120:-7.93292,0,-16.4268 1/1:1:0,1:0:0:1:38:-3.58758,-0.30103,0 dDocent_Contig_10566 12 . C T 237.508 . AB=0.17284;ABP=78.3148;AC=1;AF=0.166667;AN=6;AO=16;CIGAR=1X;DP=141;DPB=141;DPRA=4.92308;EPP=37.7539;EPPR=274.444;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=627;QR=4944;RO=125;RPL=0;RPP=37.7539;RPPR=274.444;RPR=16;RUN=1;SAF=16;SAP=37.7539;SAR=0;SRF=125;SRP=274.444;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:81:67,14:67:2674:14:548:-25.2737,0,-216.403 0/0:13:13,0:13:509:0:0:0,-3.91339,-46.1515 0/0:47:45,2:45:1761:2:79:0,-6.65078,-151.208 dDocent_Contig_10567 12 . C T 3652.45 . AB=0.0426357;ABP=940.548;AC=0;AF=0;AN=6;AO=22;CIGAR=1X2M1X;DP=516;DPB=515.75;DPRA=0;EPP=50.7827;EPPR=422.104;GTI=0;LEN=1;MEANALT=7.66667;MQM=40.3182;MQMR=59.7824;NS=3;NUMALT=3;ODDS=0;PAIRED=0.227273;PAIREDR=0.735751;PAO=0;PQA=0;PQR=0;PRO=0;QA=859;QR=7528;RO=193;RPL=0;RPP=50.7827;RPPR=422.104;RPR=22;RUN=1;SAF=22;SAP=50.7827;SAR=0;SRF=193;SRP=422.104;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|0:255:85,6,82,67:85:3291:6,82,67:238,2882,2563:-199.653,-206.534,-475.006,0,-251.565,-245.586,-15.5939,-267.174,-60.6392,-265.711 0|0:106:40,5,19,34:40:1572:5,19,34:195,689,1304:-93.8056,-93.8998,-221.689,-50.9241,-168.272,-174.5,0,-117.36,-74.3865,-119.072 0|0:155:68,11,36,30:68:2665:11,36,30:426,1251,1156:-77.3085,-68.8656,-284.715,0,-190.246,-208.321,-3.22234,-193.482,-124.615,-213.365 dDocent_Contig_10569 7 . C T 2513.72 . AB=0.121212;ABP=44.1367;AC=0;AF=0;AN=6;AO=4;CIGAR=1X3M1D4M;DP=111;DPB=101.667;DPRA=0;EPP=11.6962;EPPR=61.6401;GTI=0;LEN=1;MEANALT=2;MQM=60;MQMR=60;NS=3;NUMALT=2;ODDS=6.93889e-18;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=154;QR=1058;RO=27;RPL=0;RPP=11.6962;RPPR=61.6401;RPR=4;RUN=1;SAF=4;SAP=11.6962;SAR=0;SRF=27;SRP=61.6401;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|0:57:9,0,48:9:351:0,48:0,1945:-158.083,-160.792,-189.641,0,-29.2405,-14.7911 0|0:21:3,0,18:3:117:0,18:0,709:-57.8143,-58.7174,-68.3345,0,-10.0073,-4.58875 0|0:33:15,4,14:15:590:4,14:154,553:-40.9968,-32.8697,-80.1971,0,-35.8959,-44.3245 dDocent_Contig_10572 18 . A C 578.902 . AB=0.375;ABP=8.43898;AC=2;AF=0.5;AN=4;AO=15;CIGAR=1X4M;DP=40;DPB=40;DPRA=0;EPP=35.5824;EPPR=39.9253;GTI=0;LEN=1;MEANALT=1.5;MQM=60;MQMR=60;NS=2;NUMALT=2;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=607;QR=671;RO=17;RPL=0;RPP=35.5824;RPPR=39.9253;RPR=15;RUN=1;SAF=15;SAP=35.5824;SAR=0;SRF=17;SRP=39.9253;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|1:23:10,0,13:10:402:0,13:0,525:-40.6737,-43.684,-76.812,0,-33.5304,-29.617 .:.:.:.:.:.:.:. 0|1:17:7,8,2:7:269:8,2:303,82:-20.9155,0,-19.6522,-16.2434,-15.2866,-37.7357 dDocent_Contig_10573 109 . C T 93.6198 . AB=0.294118;ABP=9.26925;AC=1;AF=0.166667;AN=6;AO=5;CIGAR=1X;DP=30;DPB=30;DPRA=2.61538;EPP=13.8677;EPPR=57.2971;GTI=0;LEN=1;MEANALT=1;MQM=48;MQMR=60;NS=3;NUMALT=1;ODDS=1.73472e-18;PAIRED=0;PAIREDR=0.84;PAO=0;PQA=0;PQR=0;PRO=0;QA=175;QR=862;RO=25;RPL=0;RPP=13.8677;RPPR=57.2971;RPR=5;RUN=1;SAF=0;SAP=13.8677;SAR=5;SRF=0;SRP=57.2971;SRR=25;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:17:12,5:12:428:5:175:-10.8848,0,-33.7416 0/0:6:6,0:6:186:0:0:0,-1.80618,-17.0449 0/0:7:7,0:7:248:0:0:0,-2.10721,-22.6642 dDocent_Contig_10574 44 . G C 108.819 . AB=0.26087;ABP=14.4341;AC=2;AF=0.333333;AN=6;AO=6;CIGAR=1X;DP=35;DPB=35;DPRA=0.958333;EPP=16.0391;EPPR=65.983;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=229;QR=1113;RO=29;RPL=0;RPP=16.0391;RPPR=65.983;RPR=6;RUN=1;SAF=6;SAP=16.0391;SAR=0;SRF=29;SRP=65.983;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:16:12,4:12:443:4:162:-10.1505,0,-35.3924 0/1:7:5,2:5:198:2:67:-4.25348,0,-16.0902 0/0:12:12,0:12:472:0:0:0,-3.61236,-42.831 dDocent_Contig_10577 11 . C T 205.634 . AB=0.232558;ABP=29.7245;AC=2;AF=0.333333;AN=6;AO=10;CIGAR=1X;DP=46;DPB=46;DPRA=7.16667;EPP=24.725;EPPR=81.1833;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=403;QR=1436;RO=36;RPL=0;RPP=24.725;RPPR=81.1833;RPR=10;RUN=1;SAF=10;SAP=24.725;SAR=0;SRF=36;SRP=81.1833;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:35:27,8:27:1085:8:323:-18.9027,0,-87.4009 0/0:3:3,0:3:115:0:0:0,-0.90309,-10.725 0/1:8:6,2:6:236:2:80:-5.18333,0,-19.2017 dDocent_Contig_10578 58 . G A 441.398 . AB=0.44;ABP=3.79203;AC=4;AF=0.666667;AN=6;AO=15;CIGAR=1X;DP=29;DPB=29;DPRA=0;EPP=35.5824;EPPR=33.4109;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=593;QR=538;RO=14;RPL=15;RPP=35.5824;RPPR=33.4109;RPR=0;RUN=1;SAF=15;SAP=35.5824;SAR=0;SRF=14;SRP=33.4109;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 1/1:4:0,4:0:0:4:161:-14.8755,-1.20412,0 0/1:18:8,10:8:311:10:398:-30.7597,0,-22.9349 0/1:7:6,1:6:227:1:34:-1.2917,0,-18.6835 dDocent_Contig_10579 18 . G A 100.465 . AB=0.357143;ABP=5.49198;AC=2;AF=0.333333;AN=6;AO=5;CIGAR=1X;DP=30;DPB=30;DPRA=0.4375;EPP=13.8677;EPPR=57.2971;GTI=0;LEN=1;MEANALT=1;MQM=48;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=0;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=192;QR=978;RO=25;RPL=0;RPP=13.8677;RPPR=57.2971;RPR=5;RUN=1;SAF=5;SAP=13.8677;SAR=0;SRF=25;SRP=57.2971;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:16:16,0:16:614:0:0:0,-4.81648,-55.5882 0/1:6:4,2:4:162:2:71:-4.87967,0,-13.1608 0/1:8:5,3:5:202:3:121:-8.68956,0,-16.1538 dDocent_Contig_10581 16 . T C 444.922 . AB=0.16;ABP=28.1125;AC=0;AF=0;AN=6;AO=4;CIGAR=1X1M1X3M;DP=91;DPB=91;DPRA=0;EPP=11.6962;EPPR=135.47;GTI=0;LEN=1;MEANALT=2;MQM=6;MQMR=60;NS=3;NUMALT=3;ODDS=0;PAIRED=0;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=24;QR=2370;RO=61;RPL=0;RPP=11.6962;RPPR=135.47;RPR=4;RUN=1;SAF=4;SAP=11.6962;SAR=0;SRF=61;SRP=135.47;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|0:25:16,0,4,5:16:613:0,4,5:0,24,189:-10.8639,-15.6804,-66.082,-15.7504,-66.0553,-64.8512,0,-50.5787,-50.5661,-49.0736 0|0:37:21,4,0,12:21:809:4,0,12:157,0,475:-33.0215,-38.4716,-103.68,-39.3431,-104.884,-105.804,0,-65.7887,-66.692,-63.0796 0|0:29:24,0,0,4:24:948:0,0,4:0,0,162:-6.12965,-13.3544,-91.352,-13.3544,-91.352,-91.352,0,-77.9924,-77.9924,-76.7882 dDocent_Contig_10583 12 . A G 318.102 . AB=0.5;ABP=3.0103;AC=1;AF=0.166667;AN=6;AO=11;CIGAR=1X;DP=32;DPB=32;DPRA=4.4;EPP=26.8965;EPPR=48.6112;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=440;QR=853;RO=21;RPL=0;RPP=26.8965;RPPR=48.6112;RPR=11;RUN=1;SAF=11;SAP=26.8965;SAR=0;SRF=21;SRP=48.6112;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:22:11,11:11:446:11:440:-33.3329,0,-33.8735 0/0:6:6,0:6:244:0:0:0,-1.80618,-22.3388 0/0:4:4,0:4:163:0:0:0,-1.20412,-15.0584 dDocent_Contig_10584 11 . A T 927.42 . AB=0.0584958;ABP=610.835;AC=0;AF=0;AN=6;AO=21;CIGAR=1M10I5M1X;DP=410;DPB=637;DPRA=0;EPP=48.6112;EPPR=545.878;GTI=0;LEN=1;MEANALT=7.5;MQM=60;MQMR=60;NS=3;NUMALT=6;ODDS=0;PAIRED=1;PAIREDR=1;PAO=3;PQA=122;PQR=10;PRO=0.25;QA=732;QR=9597;RO=250;RPL=0;RPP=48.6112;RPPR=545.878;RPR=21;RUN=1;SAF=21;SAP=48.6112;SAR=0;SRF=250;SRP=545.878;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|0:198:120,8,2,19,0,22,25:120:4607:8,2,19,0,22,25:293,75,662,0,761,890:-36.4033,-48.5795,-424.358,-66.3829,-420.623,-443.967,-18.7007,-372.941,-390.743,-391.167,-72.5269,-426.767,-444.569,-396.887,-450.713,-10.7016,-364.941,-382.744,-335.062,-388.887,-382.265,0,-354.243,-372.045,-324.364,-378.189,-316.364,-370.663 0|0:51:27,6,0,0,0,10,8:27:1020:6,0,0,0,10,8:194,0,0,0,361,288:-21.3364,-13.8273,-95.6317,-29.4642,-97.4379,-113.079,-29.4642,-97.4379,-113.079,-113.079,-29.4642,-97.4379,-113.079,-113.079,-113.079,0,-67.9803,-83.6195,-83.6195,-83.6195,-80.6092,-5.96381,-73.9421,-89.5817,-89.5817,-89.5817,-60.123,-87.1735 0|0:161:103,6,4,2,4,25,15:103:3970:6,4,2,4,25,15:227,150,70,148,879,553:-40.5252,-52.92,-377.131,-59.2434,-366.65,-384.055,-65.8363,-373.242,-379.565,-391.249,-59.423,-366.829,-373.152,-379.744,-384.235,0,-307.402,-313.725,-320.317,-313.904,-318.486,-26.3088,-333.718,-340.04,-346.632,-340.219,-280.793,-347.812 dDocent_Contig_10585 89 . C A 316.638 . AB=0.54;ABP=3.70517;AC=3;AF=0.5;AN=6;AO=27;CIGAR=1X1M2X;DP=50;DPB=50;DPRA=0;EPP=61.6401;EPPR=48.6112;GTI=0;LEN=1;MEANALT=1.66667;MQM=21.1852;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=0;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=1017;QR=722;RO=21;RPL=0;RPP=61.6401;RPPR=48.6112;RPR=27;RUN=1;SAF=27;SAP=61.6401;SAR=0;SRF=21;SRP=48.6112;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|1:34:11,22:11:374:22:831:-29.549,0,-23.7053 0|1:9:6,2:6:209:2:74:-0.15358,0,-16.3932 0|1:7:4,3:4:139:3:112:-5.63565,0,-10.7455 dDocent_Contig_10586 17 . C T 76.0858 . AB=0.142857;ABP=57.2971;AC=2;AF=0.333333;AN=6;AO=8;CIGAR=1X;DP=63;DPB=63;DPRA=0;EPP=20.3821;EPPR=122.441;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=3.46945e-18;PAIRED=1;PAIREDR=0.963636;PAO=0;PQA=0;PQR=0;PRO=0;QA=320;QR=2202;RO=55;RPL=0;RPP=20.3821;RPPR=122.441;RPR=8;RUN=1;SAF=8;SAP=20.3821;SAR=0;SRF=55;SRP=122.441;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:27:23,4:23:919:4:156:-6.28802,0,-74.8856 0/1:22:19,3:19:753:3:123:-4.84213,0,-61.4703 0/0:14:13,1:13:530:1:41:0,-0.119853,-43.952 dDocent_Contig_10587 12 . T C 664.459 . AB=0.352113;ABP=16.4979;AC=3;AF=0.5;AN=6;AO=25;CIGAR=1X;DP=71;DPB=71;DPRA=0;EPP=57.2971;EPPR=102.898;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=3.46945e-18;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=1012;QR=1836;RO=46;RPL=0;RPP=57.2971;RPPR=102.898;RPR=25;RUN=1;SAF=25;SAP=57.2971;SAR=0;SRF=46;SRP=102.898;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:38:17,21:17:680:21:849:-65.2828,0,-50.0889 0/1:10:8,2:8:313:2:81:-4.67543,0,-25.5197 0/1:23:21,2:21:843:2:82:-0.855988,0,-69.259 dDocent_Contig_10588 7 . C A 514.441 . AB=0.148289;ABP=285.591;AC=3;AF=0.5;AN=6;AO=39;CIGAR=1X;DP=263;DPB=263;DPRA=0;EPP=87.6977;EPPR=489.42;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=1501;QR=8553;RO=224;RPL=0;RPP=87.6977;RPPR=489.42;RPR=39;RUN=1;SAF=39;SAP=87.6977;SAR=0;SRF=224;SRP=489.42;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:168:143,25:143:5456:25:958:-35.9603,0,-440.455 0/1:34:29,5:29:1093:5:195:-7.68918,0,-88.4369 0/1:61:52,9:52:2004:9:348:-13.3175,0,-162.232 dDocent_Contig_10589 14 . T C 644.326 . AB=0.360825;ABP=19.3299;AC=2;AF=0.333333;AN=6;AO=43;CIGAR=1X;DP=170;DPB=170;DPRA=0;EPP=96.3836;EPPR=278.787;GTI=0;LEN=1;MEANALT=1;MQM=36.2791;MQMR=51.9921;NS=3;NUMALT=1;ODDS=0;PAIRED=0.697674;PAIREDR=0.76378;PAO=0;PQA=0;PQR=0;PRO=0;QA=1662;QR=5056;RO=127;RPL=0;RPP=96.3836;RPPR=278.787;RPR=43;RUN=1;SAF=43;SAP=96.3836;SAR=0;SRF=127;SRP=278.787;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:73:65,8:65:2590:8:298:0,-9.62323,-201.014 0/1:50:34,16:34:1348:16:630:-20.5045,0,-92.6737 0/1:47:28,19:28:1118:19:734:-47.451,0,-76.3602 dDocent_Contig_10590 64 . G A 212.171 . AB=0.26087;ABP=25.858;AC=3;AF=0.5;AN=6;AO=12;CIGAR=1X;DP=46;DPB=46;DPRA=0;EPP=29.068;EPPR=76.8404;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=439;QR=1215;RO=34;RPL=12;RPP=29.068;RPPR=76.8404;RPR=0;RUN=1;SAF=12;SAP=29.068;SAR=0;SRF=34;SRP=76.8404;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:24:20,4:20:717:4:154:-7.00874,0,-57.6314 0/1:17:12,5:12:424:5:174:-10.8824,0,-33.3732 0/1:5:2,3:2:74:3:111:-8.84877,0,-5.52073 dDocent_Contig_10591 13 . G A 2569.44 . AB=0.555556;ABP=5.18177;AC=5;AF=0.833334;AN=6;AO=78;CIGAR=1X1M;DP=114;DPB=114;DPRA=0;EPP=172.385;EPPR=46.4397;GTI=0;LEN=1;MEANALT=1.66667;MQM=50.6282;MQMR=60;NS=3;NUMALT=2;ODDS=1.38778e-17;PAIRED=0.474359;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=3096;QR=797;RO=20;RPL=0;RPP=172.385;RPPR=46.4397;RPR=78;RUN=1;SAF=78;SAP=172.385;SAR=0;SRF=20;SRP=46.4397;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 1|1:61:11,14,36:11:439:14,36:562,1443:-123.819,-80.8207,-112.761,-10.1563,0,-35.4723 1|1:33:0,0,33:0:0:0,33:0,1302:-112.27,-112.27,-112.27,-9.93399,-9.93399,0 0|1:20:9,2,9:9:358:2,9:81,351:-24.3782,-20.4017,-49.2878,0,-22.7873,-26.7585 dDocent_Contig_10592 18 . C T 137.548 . AB=0.157895;ABP=41.6397;AC=1;AF=0.166667;AN=6;AO=6;CIGAR=1X3M1X;DP=45;DPB=45;DPRA=2.71429;EPP=16.0391;EPPR=74.6689;GTI=0;LEN=1;MEANALT=1.5;MQM=44;MQMR=60;NS=3;NUMALT=2;ODDS=0;PAIRED=0;PAIREDR=0.969697;PAO=0;PQA=0;PQR=0;PRO=0;QA=240;QR=1318;RO=33;RPL=0;RPP=16.0391;RPPR=74.6689;RPR=6;RUN=1;SAF=6;SAP=16.0391;SAR=0;SRF=33;SRP=74.6689;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|0:35:25,4,6:25:1002:4,6:159,230:-10.7824,-5.70622,-87.078,0,-69.973,-80.762 0|0:7:7,0,0:7:275:0,0:0,0:0,-2.10721,-25.1171,-2.10721,-25.1171,-25.1171 0|1:3:1,2,0:1:41:2,0:81,0:-6.48606,0,-3.19148,-6.78709,-3.79354,-10.178 dDocent_Contig_10593 23 . C A 68.3006 . AB=0.235294;ABP=13.3567;AC=1;AF=0.166667;AN=6;AO=4;CIGAR=1X;DP=60;DPB=60;DPRA=0.790698;EPP=11.6962;EPPR=124.613;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=149;QR=2235;RO=56;RPL=0;RPP=11.6962;RPPR=124.613;RPR=4;RUN=1;SAF=4;SAP=11.6962;SAR=0;SRF=56;SRP=124.613;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:23:23,0:23:927:0:0:0,-6.92369,-83.7344 0/0:20:20,0:20:785:0:0:0,-6.0206,-70.9677 0/1:17:13,4:13:523:4:149:-8.65397,0,-42.3004 dDocent_Contig_10594 17 . T G 37.547 . AB=0.285714;ABP=5.80219;AC=1;AF=0.166667;AN=6;AO=4;CIGAR=1X;DP=51;DPB=51;DPRA=2.6875;EPP=11.6962;EPPR=105.07;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=163;QR=1869;RO=47;RPL=0;RPP=11.6962;RPPR=105.07;RPR=4;RUN=1;SAF=4;SAP=11.6962;SAR=0;SRF=47;SRP=105.07;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:36:34,2:34:1357:2:82:0,-3.0574,-114.613 0/0:8:8,0:8:317:0:0:0,-2.40824,-28.8952 0/1:7:5,2:5:195:2:81:-5.57852,0,-15.8167 dDocent_Contig_10595 10 . C T 66.6322 . AB=0.333333;ABP=5.18177;AC=1;AF=0.25;AN=4;AO=3;CIGAR=1X;DP=34;DPB=34;DPRA=0.36;EPP=9.52472;EPPR=70.3259;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=2;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=122;QR=1257;RO=31;RPL=0;RPP=9.52472;RPPR=70.3259;RPR=3;RUN=1;SAF=3;SAP=9.52472;SAR=0;SRF=31;SRP=70.3259;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:25:25,0:25:1013:0:0:0,-7.52575,-91.4631 ./.:.:.:.:.:.:.:. 0/1:9:6,3:6:244:3:122:-8.66322,0,-19.6296 dDocent_Contig_10596 7 . C T 3594.41 . AB=0.733333;ABP=81.0385;AC=3;AF=0.5;AN=6;AO=121;CIGAR=1X;DP=165;DPB=165;DPRA=0;EPP=265.758;EPPR=98.5551;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=0.954545;PAO=0;PQA=0;PQR=0;PRO=0;QA=4598;QR=1662;RO=44;RPL=0;RPP=265.758;RPPR=98.5551;RPR=121;RUN=1;SAF=121;SAP=265.758;SAR=0;SRF=44;SRP=98.5551;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:96:22,74:22:819:74:2789:-222.29,0,-45.1262 0/1:38:13,25:13:495:25:971:-76.2639,0,-33.454 0/1:31:9,22:9:348:22:838:-66.4098,0,-22.3484 dDocent_Contig_10597 12 . T A 55.4121 . AB=0;ABP=0;AC=0;AF=0;AN=6;AO=3;CIGAR=1X1M1D2M1X1M;DP=40;DPB=39.1429;DPRA=2.875;EPP=9.52472;EPPR=76.8404;GTI=0;LEN=1;MEANALT=1;MQM=19;MQMR=60;NS=3;NUMALT=2;ODDS=0;PAIRED=0;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=57;QR=1323;RO=34;RPL=0;RPP=9.52472;RPPR=76.8404;RPR=3;RUN=1;SAF=3;SAP=9.52472;SAR=0;SRF=34;SRP=76.8404;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|0:23:20,3,0:20:778:3,0:57,0:0,-2.4389,-65.8603,-6.0206,-66.7634,-70.1552 0|0:8:8,0,0:8:309:0,0:0,0:0,-2.40824,-28.1724,-2.40824,-28.1724,-28.1724 0|0:9:6,0,3:6:236:0,3:0,108:-7.36511,-9.17129,-28.6066,0,-19.8062,-18.9031 dDocent_Contig_10598 92 . T C 163.841 . AB=0;ABP=0;AC=4;AF=1;AN=4;AO=2;CIGAR=1X2M1I3M9X1I1X;DP=7;DPB=9.125;DPRA=0;EPP=7.35324;EPPR=0;GTI=0;LEN=1;MEANALT=1;MQM=30.5;MQMR=0;NS=2;NUMALT=3;ODDS=0;PAIRED=0;PAIREDR=0;PAO=5;PQA=185;PQR=0;PRO=0;QA=76;QR=0;RO=0;RPL=0;RPP=7.35324;RPPR=0;RPR=2;RUN=1;SAF=2;SAP=7.35324;SAR=0;SRF=0;SRP=0;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 1|1:5:0,2,3,0:0:0:2,3,0:73,113,0:-12.5088,-6.60371,-6.00165,-5.98602,0,-5.08293,-12.5088,-6.60371,-5.98602,-12.5088 .:.:.:.:.:.:.:. 1|1:2:0,0,0,2:0:0:0,0,2:0,0,76:-5.5725,-5.5725,-5.5725,-5.5725,-5.5725,-5.5725,-0.60206,-0.60206,-0.60206,0 dDocent_Contig_10600 26 . A G 386.701 . AB=0.147059;ABP=39.7976;AC=3;AF=0.5;AN=6;AO=5;CIGAR=2X1M1X;DP=34;DPB=34;DPRA=0;EPP=13.8677;EPPR=35.5824;GTI=0;LEN=1;MEANALT=2;MQM=60;MQMR=60;NS=3;NUMALT=2;ODDS=3.46945e-18;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=197;QR=566;RO=15;RPL=0;RPP=13.8677;RPPR=35.5824;RPR=5;RUN=1;SAF=5;SAP=13.8677;SAR=0;SRF=15;SRP=35.5824;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|1:22:7,12,2:7:264:12,2:459,79:-35.6297,0,-18.0781,-31.2312,-15.1785,-52.2649 0|1:3:1,0,2:1:37:0,2:0,78:-6.50021,-6.80124,-9.82164,0,-3.3968,-2.79474 0|1:9:7,1,1:7:265:1,1:40,40:-1.18787,0,-21.4046,0,-18.4079,-21.4046 dDocent_Contig_10601 14 . T G 179.08 . AB=0.35;ABP=6.91895;AC=1;AF=0.166667;AN=6;AO=7;CIGAR=1X;DP=34;DPB=34;DPRA=2.85714;EPP=18.2106;EPPR=61.6401;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=282;QR=1081;RO=27;RPL=0;RPP=18.2106;RPPR=61.6401;RPR=7;RUN=1;SAF=7;SAP=18.2106;SAR=0;SRF=27;SRP=61.6401;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:10:10,0:10:406:0:0:0,-3.0103,-36.9 0/0:4:4,0:4:160:0:0:0,-1.20412,-14.7829 0/1:20:13,7:13:515:7:282:-19.7318,0,-40.6737 dDocent_Contig_10602 29 . G A 679.243 . AB=0.1;ABP=72.4974;AC=1;AF=0.166667;AN=6;AO=5;CIGAR=1X1M2X1M1X;DP=50;DPB=50;DPRA=0;EPP=13.8677;EPPR=33.4109;GTI=0;LEN=1;MEANALT=3.33333;MQM=60;MQMR=60;NS=3;NUMALT=4;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=197;QR=552;RO=14;RPL=0;RPP=13.8677;RPPR=33.4109;RPR=5;RUN=1;SAF=5;SAP=13.8677;SAR=0;SRF=14;SRP=33.4109;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|0:27:8,2,2,11,4:8:317:2,2,11,4:78,78,441,161:-33.9283,-29.926,-55.4133,-29.926,-49.6046,-55.4133,0,-19.6798,-19.6798,-22.7792,-23.0669,-42.7459,-42.7459,-12.8197,-47.9527 1|0:12:1,0,2,9,0:1:40:0,2,9,0:0,78,346,0:-31.2056,-31.5066,-34.8029,-25.094,-28.3906,-27.7886,-3.10659,-6.40498,0,-3.69571,-31.5066,-34.8029,-28.3906,-6.40498,-34.8029 0|0:11:5,1,1,3,0:5:195:1,1,3,0:40,41,119,0:-8.31025,-6.51561,-22.2523,-6.42463,-19.166,-22.1623,0,-12.7514,-12.661,-15.1466,-9.8154,-22.5534,-22.4634,-16.0497,-25.8502 dDocent_Contig_10603 27 . T A 667.993 . AB=0.547619;ABP=3.83753;AC=2;AF=0.333333;AN=6;AO=23;CIGAR=1X;DP=43;DPB=43;DPRA=21;EPP=52.9542;EPPR=46.4397;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=914;QR=798;RO=20;RPL=0;RPP=52.9542;RPPR=46.4397;RPR=23;RUN=1;SAF=23;SAP=52.9542;SAR=0;SRF=20;SRP=46.4397;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:17:7,10:7:285:10:404:-31.6023,0,-20.9069 0/0:1:1,0:1:41:0:0:0,-0.30103,-4.09457 0/1:25:12,13:12:472:13:510:-38.7192,0,-35.2981 dDocent_Contig_10604 21 . C A 143.376 . AB=0.666667;ABP=3.73412;AC=2;AF=0.333334;AN=6;AO=2;CIGAR=3X;DP=19;DPB=19;DPRA=0.6;EPP=7.35324;EPPR=31.2394;GTI=0;LEN=1;MEANALT=1;MQM=53;MQMR=60;NS=3;NUMALT=2;ODDS=0;PAIRED=0;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=76;QR=520;RO=13;RPL=0;RPP=7.35324;RPPR=31.2394;RPR=2;RUN=1;SAF=2;SAP=7.35324;SAR=0;SRF=13;SRP=31.2394;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|1:11:7,4,0:7:281:4,0:161,0:-11.5602,0,-22.3508,-13.6674,-23.555,-36.8208 0|1:3:1,0,2:1:40:0,2:0,76:-6.28859,-6.58962,-9.89172,0,-3.69465,-3.09259 0|0:5:5,0,0:5:199:0,0:0,0:0,-1.50515,-18.2881,-1.50515,-18.2881,-18.2881 dDocent_Contig_10605 15 . T A 1323.78 . AB=0.648148;ABP=13.3047;AC=4;AF=0.666667;AN=6;AO=44;CIGAR=1X;DP=63;DPB=63;DPRA=0;EPP=98.5551;EPPR=44.2683;GTI=0;LEN=1;MEANALT=1;MQM=57.6364;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=0.909091;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=1736;QR=703;RO=19;RPL=0;RPP=98.5551;RPPR=44.2683;RPR=44;RUN=1;SAF=44;SAP=98.5551;SAR=0;SRF=19;SRP=44.2683;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:28:13,15:13:468:15:592:-40.0925,0,-34.0159 1/1:9:0,9:0:0:9:354:-32.2179,-2.70927,0 0/1:26:6,20:6:235:20:790:-63.5901,0,-13.6941 dDocent_Contig_10606 33 . A G 12245.8 . AB=0.130621;ABP=1663.35;AC=3;AF=0.5;AN=6;AO=183;CIGAR=1X2M;DP=1401;DPB=1402;DPRA=0;EPP=400.39;EPPR=704.396;GTI=0;LEN=1;MEANALT=8.33333;MQM=45.3333;MQMR=52.839;NS=3;NUMALT=3;ODDS=2.22045e-16;PAIRED=0;PAIREDR=0.0804954;PAO=0;PQA=0;PQR=0;PRO=0;QA=6473;QR=12778;RO=323;RPL=0;RPP=400.39;RPPR=704.396;RPR=183;RUN=1;SAF=183;SAP=400.39;SAR=0;SRF=323;SRP=704.396;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|1:773:160,436,113,43:160:6349:436,113,43:17084,4046,1685:-684.94,0,-348.259,-413.602,-160.023,-859.101,-643.749,-390.164,-803.763,-1110.31 0|1:218:49,127,21,11:49:1914:127,21,11:4874,697,427:-213.575,0,-106.333,-174.863,-91.1139,-313.089,-208.232,-124.482,-299.319,-349.464 0|1:410:114,219,49,19:114:4515:219,49,19:8485,1730,745:-331.591,0,-272.372,-230.375,-202.785,-553.945,-317.231,-289.628,-520.019,-649.824 dDocent_Contig_10607 19 . G A 1114.18 . AB=0.513158;ABP=3.12459;AC=3;AF=0.5;AN=6;AO=39;CIGAR=1X;DP=76;DPB=76;DPRA=0;EPP=87.6977;EPPR=83.3548;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=1542;QR=1440;RO=37;RPL=0;RPP=87.6977;RPPR=83.3548;RPR=39;RUN=1;SAF=39;SAP=87.6977;SAR=0;SRF=37;SRP=83.3548;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:23:9,14:9:362:14:560:-43.8206,0,-26.0207 0/1:22:9,13:9:350:13:516:-40.1646,0,-25.2348 0/1:31:19,12:19:728:12:466:-32.9557,0,-56.5136 dDocent_Contig_10608 105 . N A 88.7782 . AB=0;ABP=0;AC=4;AF=1;AN=4;AO=3;CIGAR=4X;DP=3;DPB=3;DPRA=0;EPP=9.52472;EPPR=0;GTI=0;LEN=1;MEANALT=1;MQM=31.3333;MQMR=0;NS=2;NUMALT=1;ODDS=0;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=111;QR=0;RO=0;RPL=0;RPP=9.52472;RPPR=0;RPR=3;RUN=1;SAF=3;SAP=9.52472;SAR=0;SRF=0;SRP=0;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL .:.:.:.:.:.:.:. 1|1:1:0,1:0:0:1:37:-3.52359,-0.30103,0 1|1:2:0,2:0:0:2:74:-5.0515,-0.60206,0 dDocent_Contig_10609 19 . A T 237.326 . AB=0.132159;ABP=269.795;AC=3;AF=0.5;AN=6;AO=30;CIGAR=1X;DP=227;DPB=227;DPRA=0;EPP=68.1545;EPPR=413.595;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=0.994924;PAO=0;PQA=0;PQR=0;PRO=0;QA=1073;QR=7676;RO=197;RPL=0;RPP=68.1545;RPPR=430.79;RPR=30;RUN=1;SAF=30;SAP=68.1545;SAR=0;SRF=195;SRP=413.595;SRR=2;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:144:130,14:130:5125:14:510:-2.88529,0,-417.796 0/1:26:18,8:18:676:8:296:-19.166,0,-53.3308 0/1:57:49,8:49:1875:8:267:-7.18577,0,-151.801 dDocent_Contig_10610 11 . C T 1050.77 . AB=0.28481;ABP=66.5602;AC=3;AF=0.5;AN=6;AO=45;CIGAR=1X2M;DP=158;DPB=158;DPRA=0;EPP=69.0713;EPPR=167.872;GTI=0;LEN=1;MEANALT=2.33333;MQM=57.7778;MQMR=59.9902;NS=3;NUMALT=3;ODDS=0;PAIRED=0.622222;PAIREDR=0.852941;PAO=0;PQA=0;PQR=0;PRO=0;QA=1725;QR=4047;RO=102;RPL=0;RPP=100.727;RPPR=224.5;RPR=45;RUN=1;SAF=41;SAP=69.0713;SAR=4;SRF=95;SRP=167.872;SRR=7;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|1:71:45,3,22,0:45:1806:3,22,0:120,848,0:-55.7933,-59.4524,-207.369,0,-138.943,-142.206,-69.3397,-208.272,-148.828,-218.158 0|1:33:16,5,10,2:16:628:5,10,2:197,355,80:-23.8054,-12.4043,-62.5645,0,-35.4369,-48.6344,-22.0277,-57.4779,-45.0539,-73.0862 0|1:54:41,0,13,0:41:1613:0,13,0:0,522,0:-31.0013,-43.3435,-176.01,0,-133.065,-129.152,-43.3435,-176.01,-133.065,-176.01 dDocent_Contig_10611 10 . A G 37.3698 . AB=0.157895;ABP=22.325;AC=1;AF=0.166667;AN=6;AO=4;CIGAR=1X;DP=41;DPB=41;DPRA=3.6;EPP=11.6962;EPPR=74.9036;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=0.945946;PAO=0;PQA=0;PQR=0;PRO=0;QA=162;QR=1485;RO=37;RPL=0;RPP=11.6962;RPPR=83.3548;RPR=4;RUN=1;SAF=4;SAP=11.6962;SAR=0;SRF=36;SRP=74.9036;SRR=1;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:17:16,1:16:644:1:41:0,-1.02294,-54.1979 0/1:19:16,3:16:641:3:121:-5.56063,0,-52.3023 0/0:5:5,0:5:200:0:0:0,-1.50515,-18.3784 dDocent_Contig_10612 16 . A G 78.1081 . AB=0.25;ABP=13.8677;AC=1;AF=0.166667;AN=6;AO=16;CIGAR=1X;DP=166;DPB=166;DPRA=0;EPP=37.7539;EPPR=328.731;GTI=0;LEN=1;MEANALT=1;MQM=46.25;MQMR=60;NS=3;NUMALT=1;ODDS=6.93889e-18;PAIRED=0.375;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=646;QR=5998;RO=150;RPL=0;RPP=37.7539;RPPR=328.731;RPR=16;RUN=1;SAF=16;SAP=37.7539;SAR=0;SRF=150;SRP=328.731;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:60:55,5:55:2203:5:205:0,-1.19297,-181.572 0/1:20:15,5:15:593:5:196:-9.63462,0,-47.6854 0/0:86:80,6:80:3202:6:245:0,-3.45911,-265.819 dDocent_Contig_10613 17 . C T 2525.05 . AB=0.360465;ABP=17.5541;AC=2;AF=0.333333;AN=6;AO=31;CIGAR=1X2M1X;DP=105;DPB=105;DPRA=0;EPP=70.3259;EPPR=35.5824;GTI=0;LEN=1;MEANALT=2;MQM=60;MQMR=60;NS=3;NUMALT=2;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=1205;QR=600;RO=15;RPL=0;RPP=70.3259;RPPR=35.5824;RPR=31;RUN=1;SAF=31;SAP=70.3259;SAR=0;SRF=15;SRP=35.5824;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 1|0:79:7,28,44:7:280:28,44:1095,1756:-209.465,-121.551,-136.186,-66.9521,0,-76.7728 0|1:7:3,3,1:3:121:3,1:110,41:-8.05405,0,-9.06621,-5.56229,-6.58357,-15.2537 0|0:19:5,0,13:5:199:0,13:0,511:-40.5088,-42.0139,-58.4011,0,-16.3763,-12.4629 dDocent_Contig_10614 177 . A G 126.466 . AB=0.3;ABP=9.95901;AC=2;AF=0.333333;AN=6;AO=6;CIGAR=1X;DP=23;DPB=23;DPRA=3.33333;EPP=16.0391;EPPR=39.9253;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=238;QR=687;RO=17;RPL=6;RPP=16.0391;RPPR=39.9253;RPR=0;RUN=1;SAF=0;SAP=16.0391;SAR=6;SRF=0;SRP=39.9253;SRR=17;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:3:3,0:3:118:0:0:0,-0.90309,-11.0022 0/1:9:6,3:6:246:3:119:-8.38612,0,-19.8108 0/1:11:8,3:8:323:3:119:-7.78317,0,-26.1276 dDocent_Contig_10615 139 . A G 176.542 . AB=0.191489;ABP=41.8658;AC=2;AF=0.333333;AN=6;AO=9;CIGAR=1X;DP=55;DPB=55;DPRA=2.9375;EPP=22.5536;EPPR=102.898;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=366;QR=1759;RO=46;RPL=0;RPP=22.5536;RPPR=102.898;RPR=9;RUN=1;SAF=0;SAP=22.5536;SAR=9;SRF=0;SRP=102.898;SRR=46;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:35:27,8:27:1064:8:326:-19.1736,0,-85.5169 0/0:8:8,0:8:278:0:0:0,-2.40824,-25.3463 0/1:12:11,1:11:417:1:40:-0.383319,0,-34.2528 dDocent_Contig_10617 7 . C A 86.7156 . AB=0.214286;ABP=22.8638;AC=2;AF=0.333333;AN=6;AO=6;CIGAR=1X;DP=31;DPB=31;DPRA=4.66667;EPP=16.0391;EPPR=57.2971;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=0.96;PAO=0;PQA=0;PQR=0;PRO=0;QA=221;QR=957;RO=25;RPL=0;RPP=16.0391;RPPR=57.2971;RPR=6;RUN=1;SAF=6;SAP=16.0391;SAR=0;SRF=25;SRP=57.2971;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:20:16,4:16:624:4:143:-7.19888,0,-50.4796 0/0:3:3,0:3:109:0:0:0,-0.90309,-10.1677 0/1:8:6,2:6:224:2:78:-4.99523,0,-18.1105 dDocent_Contig_10618 100 . N A 65.2846 . AB=0;ABP=0;AC=2;AF=1;AN=2;AO=2;CIGAR=3X5I6X1M1I2M;DP=3;DPB=4.41667;DPRA=0;EPP=7.35324;EPPR=0;GTI=0;LEN=1;MEANALT=2;MQM=40;MQMR=0;NS=1;NUMALT=1;ODDS=5.99146;PAIRED=1;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=75;QR=0;RO=0;RPL=0;RPP=7.35324;RPPR=0;RPR=2;RUN=1;SAF=2;SAP=7.35324;SAR=0;SRF=0;SRP=0;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL .:.:.:.:.:.:.:. 1|1:3:0,2:0:0:2:75:-6.52738,-0.60206,0 .:.:.:.:.:.:.:. dDocent_Contig_10620 8 . T C 1498.47 . AB=0.577778;ABP=7.73928;AC=2;AF=0.333333;AN=6;AO=53;CIGAR=1X1M;DP=104;DPB=104;DPRA=0;EPP=118.098;EPPR=105.07;GTI=0;LEN=1;MEANALT=1.66667;MQM=59.9623;MQMR=60;NS=3;NUMALT=2;ODDS=6.93889e-18;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=2031;QR=1775;RO=47;RPL=0;RPP=118.098;RPPR=105.07;RPR=53;RUN=1;SAF=53;SAP=118.098;SAR=0;SRF=47;SRP=105.07;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|1:58:31,0,27:31:1199:0,27:0,1040:-76.4454,-85.7773,-184.266,0,-98.8747,-90.7469 0|1:32:4,3,25:4:143:3,25:101,952:-76.9218,-69.9494,-80.7021,0,-3.49857,-4.14515 0|0:14:12,1,1:12:433:1,1:39,39:0,-0.406482,-35.4066,-0.406482,-32.4995,-35.4066 dDocent_Contig_10621 16 . G A 1257.24 . AB=0.597222;ABP=8.92153;AC=3;AF=0.5;AN=6;AO=43;CIGAR=1X;DP=72;DPB=72;DPRA=0;EPP=96.3836;EPPR=65.983;GTI=0;LEN=1;MEANALT=1;MQM=59.9535;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=1688;QR=1164;RO=29;RPL=0;RPP=96.3836;RPPR=65.983;RPR=43;RUN=1;SAF=43;SAP=96.3836;SAR=0;SRF=29;SRP=65.983;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:22:12,10:12:475:10:394:-29.1933,0,-36.4752 0/1:25:12,13:12:491:13:495:-37.3535,0,-37.0152 0/1:25:5,20:5:198:20:799:-64.7003,0,-10.67 dDocent_Contig_10622 9 . C T 31.3204 . AB=0.354839;ABP=8.68415;AC=1;AF=0.166667;AN=6;AO=12;CIGAR=1X;DP=54;DPB=54;DPRA=2.2;EPP=29.068;EPPR=94.2121;GTI=0;LEN=1;MEANALT=1;MQM=14;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=0;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=467;QR=1611;RO=42;RPL=0;RPP=29.068;RPPR=94.2121;RPR=12;RUN=1;SAF=12;SAP=29.068;SAR=0;SRF=42;SRP=94.2121;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:31:20,11:20:772:11:428:-4.65459,0,-60.475 0/0:10:10,0:10:378:0:0:0,-3.0103,-34.3721 0/0:13:12,1:12:461:1:39:0,-2.51471,-40.441 dDocent_Contig_10623 74 . T C 3835.5 . AB=0.745946;ABP=100.21;AC=3;AF=0.5;AN=6;AO=138;CIGAR=1X2M;DP=185;DPB=185;DPRA=0;EPP=302.673;EPPR=92.0407;GTI=0;LEN=1;MEANALT=1.33333;MQM=60;MQMR=60;NS=3;NUMALT=2;ODDS=0;PAIRED=1;PAIREDR=0.97561;PAO=0;PQA=0;PQR=0;PRO=0;QA=4905;QR=1442;RO=41;RPL=138;RPP=302.673;RPPR=92.0407;RPR=0;RUN=1;SAF=138;SAP=302.673;SAR=0;SRF=41;SRP=92.0407;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|1:120:21,6,93:21:748:6,93:210,3347:-266.764,-255.999,-315.161,0,-43.8878,-32.9771 0|1:9:1,0,8:1:37:0,8:0,271:-22.0094,-22.3104,-25.3409,0,-3.3968,-0.988559 0|1:56:19,0,37:19:657:0,37:0,1287:-99.2745,-104.994,-158.38,0,-53.7318,-42.5937 dDocent_Contig_10624 7 . C A 94.4181 . AB=0.263158;ABP=12.2676;AC=2;AF=0.333333;AN=6;AO=5;CIGAR=1X;DP=32;DPB=32;DPRA=0.730769;EPP=13.8677;EPPR=61.6401;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=193;QR=1039;RO=27;RPL=0;RPP=13.8677;RPPR=61.6401;RPR=5;RUN=1;SAF=5;SAP=13.8677;SAR=0;SRF=27;SRP=61.6401;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:11:7,4:7:268:4:154:-10.9223,0,-21.1725 0/0:13:13,0:13:499:0:0:0,-3.91339,-45.2576 0/1:8:7,1:7:272:1:39:-1.48832,0,-22.439 dDocent_Contig_10625 107 . N A 54.153 . AB=0;ABP=0;AC=2;AF=1;AN=2;AO=2;CIGAR=1X;DP=2;DPB=2;DPRA=0;EPP=7.35324;EPPR=0;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=0;NS=1;NUMALT=1;ODDS=5.99146;PAIRED=1;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=57;QR=0;RO=0;RPL=0;RPP=7.35324;RPPR=0;RPR=2;RUN=1;SAF=0;SAP=7.35324;SAR=2;SRF=0;SRP=0;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL ./.:.:.:.:.:.:.:. 1/1:2:0,2:0:0:2:57:-5.41422,-0.60206,0 ./.:.:.:.:.:.:.:. dDocent_Contig_10626 107 . N A 220.041 . AB=0;ABP=0;AC=4;AF=1;AN=4;AO=7;CIGAR=1X;DP=7;DPB=7;DPRA=0;EPP=18.2106;EPPR=0;GTI=0;LEN=1;MEANALT=1;MQM=46.2857;MQMR=0;NS=2;NUMALT=1;ODDS=0;PAIRED=0.142857;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=237;QR=0;RO=0;RPL=0;RPP=18.2106;RPPR=0;RPR=7;RUN=1;SAF=0;SAP=18.2106;SAR=7;SRF=0;SRP=0;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 1/1:6:0,6:0:0:6:208:-18.802,-1.80618,0 ./.:.:.:.:.:.:.:. 1/1:1:0,1:0:0:1:29:-2.89966,-0.30103,0 dDocent_Contig_10628 45 . T A 238.793 . AB=0.294118;ABP=15.5282;AC=1;AF=0.166667;AN=6;AO=10;CIGAR=1X;DP=44;DPB=44;DPRA=6.8;EPP=24.725;EPPR=76.8404;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=392;QR=1357;RO=34;RPL=0;RPP=24.725;RPPR=76.8404;RPR=10;RUN=1;SAF=10;SAP=24.725;SAR=0;SRF=34;SRP=76.8404;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:34:24,10:24:962:10:392:-25.402,0,-76.6459 0/0:3:3,0:3:121:0:0:0,-0.90309,-11.2802 0/0:7:7,0:7:274:0:0:0,-2.10721,-25.0223 dDocent_Contig_10629 7 . C T 454.302 . AB=0.439024;ABP=4.33437;AC=3;AF=0.5;AN=6;AO=18;CIGAR=1X;DP=41;DPB=41;DPRA=0;EPP=42.0968;EPPR=52.9542;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=691;QR=870;RO=23;RPL=0;RPP=42.0968;RPPR=52.9542;RPR=18;RUN=1;SAF=18;SAP=42.0968;SAR=0;SRF=23;SRP=52.9542;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:19:15,4:15:574:4:156:-8.69772,0,-46.2816 0/1:12:6,6:6:220:6:234:-17.8187,0,-16.542 0/1:10:2,8:2:76:8:301:-24.4357,0,-4.20437 dDocent_Contig_10630 10 . T A 1087.51 . AB=0.427184;ABP=7.75381;AC=3;AF=0.5;AN=6;AO=44;CIGAR=1X;DP=103;DPB=103;DPRA=0;EPP=98.5551;EPPR=131.127;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=1603;QR=2345;RO=59;RPL=0;RPP=98.5551;RPPR=131.127;RPR=44;RUN=1;SAF=44;SAP=98.5551;SAR=0;SRF=59;SRP=131.127;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:71:41,30:41:1632:30:1100:-77.9383,0,-125.74 0/1:6:3,3:3:123:3:109:-8.36182,0,-9.65861 0/1:26:15,11:15:590:11:394:-27.9732,0,-45.6123 dDocent_Contig_10631 27 . G A 447.363 . AB=0.195312;ABP=106.223;AC=3;AF=0.5;AN=6;AO=25;CIGAR=1X3M1X;DP=128;DPB=128;DPRA=0;EPP=57.2971;EPPR=224.5;GTI=0;LEN=1;MEANALT=1.33333;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=6.93889e-18;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=971;QR=3993;RO=102;RPL=0;RPP=57.2971;RPPR=224.5;RPR=25;RUN=1;SAF=25;SAP=57.2971;SAR=0;SRF=102;SRP=224.5;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|1:70:61,8:61:2392:8:319:-7.94136,0,-194.32 0|1:19:17,2:17:668:2:78:-1.68373,0,-54.7345 0|1:39:24,15:24:933:15:574:-40.253,0,-72.535 dDocent_Contig_10632 40 . A C 86.6552 . AB=0.208333;ABP=20.744;AC=2;AF=0.333333;AN=6;AO=5;CIGAR=2X;DP=25;DPB=25;DPRA=12;EPP=13.8677;EPPR=46.4397;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=198;QR=788;RO=20;RPL=0;RPP=13.8677;RPPR=46.4397;RPR=5;RUN=1;SAF=5;SAP=13.8677;SAR=0;SRF=20;SRP=46.4397;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|1:10:9,1:9:355:1:39:-0.886264,0,-29.3008 0|1:14:10,4:10:394:4:159:-10.4777,0,-31.6039 0|0:1:1,0:1:39:0:0:0,-0.30103,-3.89656 dDocent_Contig_10633 38 . A G 1920.09 . AB=0.403361;ABP=12.6633;AC=2;AF=0.333333;AN=6;AO=48;CIGAR=1X1M1X;DP=119;DPB=119;DPRA=0;EPP=107.241;EPPR=74.6689;GTI=0;LEN=1;MEANALT=2;MQM=60;MQMR=60;NS=3;NUMALT=2;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=1898;QR=1312;RO=33;RPL=0;RPP=107.241;RPPR=74.6689;RPR=48;RUN=1;SAF=48;SAP=107.241;SAR=0;SRF=33;SRP=74.6689;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|1:77:22,40,15:22:868:40,15:1578,572:-123.213,0,-59.379,-82.9353,-24.5216,-149.832 0|0:15:7,3,5:7:281:3,5:118,191:-13.5534,-5.9502,-28.2124,0,-13.4559,-21.6545 1|0:27:4,5,18:4:163:5,18:202,714:-60.7651,-45.3142,-57.2583,-3.20262,0,-11.2329 dDocent_Contig_10634 14 . C A 902.06 . AB=0.382022;ABP=13.7701;AC=3;AF=0.5;AN=6;AO=34;CIGAR=1X;DP=89;DPB=89;DPRA=0;EPP=76.8404;EPPR=122.441;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=0.927273;PAO=0;PQA=0;PQR=0;PRO=0;QA=1349;QR=2217;RO=55;RPL=0;RPP=76.8404;RPPR=122.441;RPR=34;RUN=1;SAF=34;SAP=76.8404;SAR=0;SRF=55;SRP=122.441;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:41:19,22:19:774:22:862:-65.5439,0,-57.6362 0/1:17:15,2:15:600:2:79:-2.37973,0,-49.2162 0/1:31:21,10:21:843:10:408:-27.7487,0,-66.8505 dDocent_Contig_10636 25 . T A 134.525 . AB=0.115942;ABP=179.812;AC=2;AF=0.333333;AN=6;AO=25;CIGAR=1X;DP=262;DPB=262;DPRA=0;EPP=48.9587;EPPR=500.424;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=59.4515;NS=3;NUMALT=1;ODDS=0;PAIRED=0.92;PAIREDR=0.940928;PAO=0;PQA=0;PQR=0;PRO=0;QA=1000;QR=9496;RO=237;RPL=0;RPP=57.2971;RPPR=517.649;RPR=25;RUN=1;SAF=24;SAP=48.9587;SAR=1;SRF=235;SRP=500.424;SRR=2;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:99:90,9:90:3618:9:367:-3.59329,0,-294.748 0/1:39:32,7:32:1273:7:275:-13.3784,0,-103.029 0/0:124:115,9:115:4605:9:358:0,-4.74593,-381.651 dDocent_Contig_10638 120 . T C 73.6947 . AB=0.145455;ABP=63.0614;AC=1;AF=0.166667;AN=6;AO=8;CIGAR=1X;DP=97;DPB=97;DPRA=2.61905;EPP=20.3821;EPPR=196.271;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=279;QR=3033;RO=89;RPL=0;RPP=20.3821;RPPR=196.271;RPR=8;RUN=1;SAF=0;SAP=20.3821;SAR=8;SRF=0;SRP=196.271;SRR=89;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:55:47,8:47:1621:8:279:-8.89235,0,-129.615 0/0:15:15,0:15:493:0:0:0,-4.51545,-44.6821 0/0:27:27,0:27:919:0:0:0,-8.12781,-83.019 dDocent_Contig_10639 15 . T A 422.078 . AB=0.0967742;ABP=46.79;AC=0;AF=0;AN=6;AO=3;CIGAR=4M1X2M;DP=66;DPB=68.5714;DPRA=31;EPP=9.52472;EPPR=100.727;GTI=0;LEN=1;MEANALT=2;MQM=60;MQMR=56.8;NS=3;NUMALT=2;ODDS=0;PAIRED=1;PAIREDR=0.888889;PAO=0;PQA=0;PQR=0;PRO=0;QA=121;QR=1776;RO=45;RPL=0;RPP=9.52472;RPPR=100.727;RPR=3;RUN=1;SAF=3;SAP=9.52472;SAR=0;SRF=45;SRP=100.727;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|0:31:22,6,3:22:868:6,3:228,121:-11.7826,0,-64.1341,-8.4216,-55.9617,-73.4844 0|0:1:1,0,0:1:40:0,0:0,0:0,-0.30103,-3.99568,-0.30103,-3.99568,-3.99568 0|0:34:22,12,0:22:868:12,0:487,0:-33.9466,0,-68.1965,-40.5693,-71.8089,-111.977 dDocent_Contig_10641 1 . N A 321.195 . AB=0;ABP=0;AC=6;AF=1;AN=6;AO=9;CIGAR=1X1M5I2M;DP=9;DPB=20.25;DPRA=0;EPP=22.5536;EPPR=0;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=0;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=338;QR=0;RO=0;RPL=0;RPP=22.5536;RPPR=0;RPR=9;RUN=1;SAF=9;SAP=22.5536;SAR=0;SRF=0;SRP=0;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 1|1:7:0,7:0:0:7:264:-24.1207,-2.10721,0 1|1:1:0,1:0:0:1:37:-3.69783,-0.30103,0 1|1:1:0,1:0:0:1:37:-3.69783,-0.30103,0 dDocent_Contig_10642 169 . A T 112.895 . AB=0.3125;ABP=7.89611;AC=1;AF=0.25;AN=4;AO=5;CIGAR=1X;DP=37;DPB=37;DPRA=0.761905;EPP=13.8677;EPPR=72.4974;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=2;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=197;QR=1272;RO=32;RPL=5;RPP=13.8677;RPPR=72.4974;RPR=0;RUN=1;SAF=0;SAP=13.8677;SAR=5;SRF=0;SRP=72.4974;SRR=32;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:21:21,0:21:847:0:0:0,-6.32163,-76.5423 ./.:.:.:.:.:.:.:. 0/1:16:11,5:11:425:5:197:-13.2895,0,-33.7778 dDocent_Contig_10647 7 . C T 471.559 . AB=0.125;ABP=42.0968;AC=3;AF=0.5;AN=6;AO=4;CIGAR=3X5M2X4M;DP=60;DPB=60;DPRA=16;EPP=11.6962;EPPR=50.7827;GTI=0;LEN=1;MEANALT=6;MQM=60;MQMR=60;NS=3;NUMALT=5;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=153;QR=872;RO=22;RPL=0;RPP=11.6962;RPPR=50.7827;RPR=4;RUN=1;SAF=4;SAP=11.6962;SAR=0;SRF=22;SRP=50.7827;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|0:32:12,1,2,2,4,10:12:477:1,2,2,4,10:40,78,62,153,390:-28.4629,-28.7788,-67.7607,-25.6616,-61.6494,-64.3431,-27.6492,-63.6324,-60.516,-66.3258,-19.5176,-55.5062,-52.3896,-54.3734,-57.5978,0,-35.9991,-32.8824,-34.8687,-26.739,-36.2849 1|1:2:0,0,0,2,0,0:0:0:0,0,2,0,0:0,0,62,0,0:-5.31837,-5.31837,-5.31837,-5.31837,-5.31837,-5.31837,-0.60206,-0.60206,-0.60206,0,-5.31837,-5.31837,-5.31837,-0.60206,-5.31837,-5.31837,-5.31837,-5.31837,-0.60206,-5.31837,-5.31837 0|1:26:10,3,4,9,0,0:10:395:3,4,9,0,0:116,152,279,0,0:-16.8958,-10.3639,-42.0018,-7.42239,-30.4326,-38.7628,0,-22.9843,-20.0493,-29.8023,-19.9061,-42.9049,-39.9669,-32.5116,-52.4374,-19.9061,-42.9049,-39.9669,-32.5116,-52.4374,-52.4374 dDocent_Contig_10648 9 . A C 63.1783 . AB=0.222222;ABP=15.074;AC=2;AF=0.333333;AN=6;AO=4;CIGAR=1X;DP=27;DPB=27;DPRA=1;EPP=11.6962;EPPR=52.9542;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=0.826087;PAO=0;PQA=0;PQR=0;PRO=0;QA=152;QR=867;RO=23;RPL=0;RPP=11.6962;RPPR=52.9542;RPR=4;RUN=1;SAF=4;SAP=11.6962;SAR=0;SRF=23;SRP=52.9542;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:10:9,1:9:344:1:39:-0.886264,0,-28.3067 0/1:8:5,3:5:190:3:113:-8.13073,0,-15.0585 0/0:9:9,0:9:333:0:0:0,-2.70927,-30.3192 dDocent_Contig_10649 21 . T G 92.3651 . AB=0.285714;ABP=8.59409;AC=1;AF=0.25;AN=4;AO=4;CIGAR=1X;DP=31;DPB=31;DPRA=0.823529;EPP=11.6962;EPPR=61.6401;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=2;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=164;QR=1077;RO=27;RPL=0;RPP=11.6962;RPPR=61.6401;RPR=4;RUN=1;SAF=4;SAP=11.6962;SAR=0;SRF=27;SRP=61.6401;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:14:10,4:10:393:4:164:-10.9355,0,-31.5104 ./.:.:.:.:.:.:.:. 0/0:17:17,0:17:684:0:0:0,-5.11751,-61.8888 dDocent_Contig_10650 48 . A C 140.697 . AB=0.269231;ABP=15.0369;AC=2;AF=0.333333;AN=6;AO=7;CIGAR=1X;DP=28;DPB=28;DPRA=6.5;EPP=18.2106;EPPR=48.6112;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=1.73472e-18;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=274;QR=822;RO=21;RPL=0;RPP=18.2106;RPPR=48.6112;RPR=7;RUN=1;SAF=7;SAP=18.2106;SAR=0;SRF=21;SRP=48.6112;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:12:9,3:9:360:3:122:-7.76013,0,-29.1483 0/0:2:2,0:2:79:0:0:0,-0.60206,-7.49763 0/1:14:10,4:10:383:4:152:-9.83206,0,-30.6049 dDocent_Contig_10651 24 . A G 32.4675 . AB=0.222222;ABP=9.04217;AC=1;AF=0.166667;AN=6;AO=2;CIGAR=1X;DP=34;DPB=34;DPRA=0.72;EPP=7.35324;EPPR=72.4974;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=82;QR=1295;RO=32;RPL=0;RPP=7.35324;RPPR=72.4974;RPR=2;RUN=1;SAF=2;SAP=7.35324;SAR=0;SRF=32;SRP=72.4974;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:15:15,0:15:606:0:0:0,-4.51545,-54.8784 0/1:9:7,2:7:285:2:82:-5.07041,0,-23.3151 0/0:10:10,0:10:404:0:0:0,-3.0103,-36.7198 dDocent_Contig_10652 38 . A T 367.163 . AB=0.275862;ABP=28.3192;AC=2;AF=0.333333;AN=6;AO=16;CIGAR=1X;DP=66;DPB=66;DPRA=3.625;EPP=37.7539;EPPR=111.584;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=633;QR=1952;RO=50;RPL=0;RPP=37.7539;RPPR=111.584;RPR=16;RUN=1;SAF=16;SAP=37.7539;SAR=0;SRF=50;SRP=111.584;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:33:23,10:23:895:10:398:-26.2461,0,-70.9281 0/0:8:8,0:8:307:0:0:0,-2.40824,-27.9883 0/1:25:19,6:19:750:6:235:-13.9931,0,-60.2997 dDocent_Contig_10653 66 . C A 721.64 . AB=0.377358;ABP=9.93443;AC=4;AF=0.666667;AN=6;AO=25;CIGAR=1X;DP=58;DPB=58;DPRA=0;EPP=57.2971;EPPR=74.6689;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=3.46945e-18;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=1006;QR=1340;RO=33;RPL=25;RPP=57.2971;RPPR=74.6689;RPR=0;RUN=1;SAF=25;SAP=57.2971;SAR=0;SRF=33;SRP=74.6689;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:38:21,17:21:854:17:685:-50.5414,0,-65.7313 1/1:5:0,5:0:0:5:199:-18.2884,-1.50515,0 0/1:15:12,3:12:486:3:122:-6.85704,0,-39.5758 dDocent_Contig_10654 63 . A T 88.6402 . AB=0.307692;ABP=7.18621;AC=1;AF=0.166667;AN=6;AO=5;CIGAR=1X;DP=31;DPB=31;DPRA=15;EPP=13.8677;EPPR=59.4686;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=199;QR=1015;RO=26;RPL=5;RPP=13.8677;RPPR=59.4686;RPR=0;RUN=1;SAF=5;SAP=13.8677;SAR=0;SRF=26;SRP=59.4686;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:17:16,1:16:643:1:41:0,-1.02294,-54.1094 0/0:1:1,0:1:29:0:0:0,-0.30103,-2.89966 0/1:13:9,4:9:343:4:158:-10.6869,0,-27.3035 dDocent_Contig_10655 7 . C A 105.028 . AB=0.225806;ABP=23.254;AC=3;AF=0.5;AN=6;AO=7;CIGAR=1X2M1I2M;DP=31;DPB=32.4;DPRA=0;EPP=18.2106;EPPR=55.1256;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=265;QR=930;RO=24;RPL=0;RPP=18.2106;RPPR=55.1256;RPR=7;RUN=1;SAF=7;SAP=18.2106;SAR=0;SRF=24;SRP=55.1256;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|1:14:12,2:12:465:2:75:-2.90592,0,-37.9872 0|1:7:6,1:6:231:1:38:-1.69006,0,-19.0505 0|1:10:6,4:6:234:4:152:-11.0389,0,-18.4208 dDocent_Contig_10656 9 . A C 154.021 . AB=0.25;ABP=20.3821;AC=2;AF=0.333333;AN=6;AO=9;CIGAR=1X;DP=48;DPB=48;DPRA=0;EPP=22.5536;EPPR=87.6977;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=3.46945e-18;PAIRED=1;PAIREDR=0.974359;PAO=0;PQA=0;PQR=0;PRO=0;QA=348;QR=1466;RO=39;RPL=0;RPP=22.5536;RPPR=87.6977;RPR=9;RUN=1;SAF=9;SAP=22.5536;SAR=0;SRF=39;SRP=87.6977;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:17:14,3:14:515:3:115:-5.60738,0,-41.5655 0/1:15:10,5:10:379:5:194:-13.3174,0,-29.9478 0/0:16:15,1:15:572:1:39:0,-0.919915,-47.9232 dDocent_Contig_10657 19 . C T 1063.88 . AB=0.333333;ABP=32.6871;AC=3;AF=0.5;AN=6;AO=41;CIGAR=1X;DP=123;DPB=123;DPRA=0;EPP=92.0407;EPPR=181.071;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=0.97561;PAO=0;PQA=0;PQR=0;PRO=0;QA=1643;QR=3328;RO=82;RPL=0;RPP=92.0407;RPPR=181.071;RPR=41;RUN=1;SAF=41;SAP=92.0407;SAR=0;SRF=82;SRP=181.071;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:75:41,34:41:1663:34:1358:-99.8976,0,-127.312 0/1:17:15,2:15:604:2:82:-2.66217,0,-49.5809 0/1:31:26,5:26:1061:5:203:-9.32113,0,-86.4433 dDocent_Contig_10658 36 . T C 2004.5 . AB=0.835821;ABP=68.6406;AC=4;AF=0.666667;AN=6;AO=62;CIGAR=1X;DP=73;DPB=73;DPRA=0;EPP=137.642;EPPR=26.8965;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=2480;QR=439;RO=11;RPL=0;RPP=137.642;RPPR=26.8965;RPR=62;RUN=1;SAF=62;SAP=137.642;SAR=0;SRF=11;SRP=26.8965;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:37:5,32:5:200:32:1269:-103.338,0,-7.24031 0/1:30:6,24:6:239:24:969:-78.4782,0,-12.8536 1/1:6:0,6:0:0:6:242:-22.1569,-1.80618,0 dDocent_Contig_10659 138 . G A 90.0712 . AB=0.227273;ABP=17.2236;AC=2;AF=0.333333;AN=6;AO=5;CIGAR=1X;DP=24;DPB=24;DPRA=5.5;EPP=13.8677;EPPR=44.2683;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=1.73472e-18;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=204;QR=703;RO=19;RPL=0;RPP=13.8677;RPPR=44.2683;RPR=5;RUN=1;SAF=0;SAP=13.8677;SAR=5;SRF=0;SRP=44.2683;SRR=19;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:13:10,3:10:371:3:122:-7.4591,0,-29.8194 0/0:2:2,0:2:78:0:0:0,-0.60206,-7.40347 0/1:9:7,2:7:254:2:82:-5.07041,0,-20.4947 dDocent_Contig_10660 27 . T C 493.288 . AB=0.529412;ABP=3.26577;AC=2;AF=0.5;AN=4;AO=18;CIGAR=1X;DP=34;DPB=34;DPRA=0;EPP=42.0968;EPPR=37.7539;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=2;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=695;QR=643;RO=16;RPL=0;RPP=42.0968;RPPR=37.7539;RPR=18;RUN=1;SAF=18;SAP=42.0968;SAR=0;SRF=16;SRP=37.7539;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:16:9,7:9:358:7:280:-20.7551,0,-27.7658 ./.:.:.:.:.:.:.:. 0/1:18:7,11:7:285:11:415:-32.2727,0,-20.6059 dDocent_Contig_10662 7 . C A 625.801 . AB=0.342342;ABP=26.9747;AC=3;AF=0.5;AN=6;AO=38;CIGAR=1X;DP=111;DPB=111;DPRA=0;EPP=85.5263;EPPR=161.528;GTI=0;LEN=1;MEANALT=1;MQM=36.5789;MQMR=50.8904;NS=3;NUMALT=1;ODDS=0;PAIRED=0;PAIREDR=0.684932;PAO=0;PQA=0;PQR=0;PRO=0;QA=1450;QR=2792;RO=73;RPL=0;RPP=85.5263;RPPR=161.528;RPR=38;RUN=1;SAF=38;SAP=85.5263;SAR=0;SRF=73;SRP=161.528;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:82:60,22:60:2307:22:848:-33.2635,0,-156.604 0/1:9:4,5:4:153:5:184:-10.7284,0,-11.4323 0/1:20:9,11:9:332:11:418:-24.1111,0,-24.2082 dDocent_Contig_10663 15 . G A 443.223 . AB=0.113043;ABP=152.578;AC=1;AF=0.166667;AN=6;AO=13;CIGAR=1X2M1X2M1X2M1X;DP=126;DPB=127.6;DPRA=0;EPP=31.2394;EPPR=120.27;GTI=0;LEN=1;MEANALT=7.5;MQM=46.9231;MQMR=60;NS=3;NUMALT=6;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=513;QR=2090;RO=54;RPL=0;RPP=31.2394;RPPR=120.27;RPR=13;RUN=1;SAF=13;SAP=31.2394;SAR=0;SRF=54;SRP=120.27;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|1:63:26,11,6,4,1,8,3:26:1008:11,6,4,1,8,3:434,239,158,41,317,114:-26.8294,0,-79.5088,-22.6658,-70.8235,-103.666,-21.6511,-69.8166,-92.4695,-103.264,-31.271,-79.4354,-102.087,-101.084,-113.786,-8.73892,-56.9064,-79.5608,-78.555,-88.1738,-89.1503,-25.3062,-73.4708,-96.1234,-95.1189,-104.738,-82.2092,-107.219 0|0:11:7,0,4,0,0,0,0:7:280:0,4,0,0,0,0:0,154,0,0,0,0:-3.50048,-5.60769,-28.8102,0,-23.4649,-22.2608,-5.60769,-28.8102,-23.4649,-28.8102,-5.60769,-28.8102,-23.4649,-28.8102,-28.8102,-5.60769,-28.8102,-23.4649,-28.8102,-28.8102,-28.8102,-5.60769,-28.8102,-23.4649,-28.8102,-28.8102,-28.8102,-28.8102 0|0:52:21,2,5,5,4,8,7:21:802:2,5,5,4,8,7:79,197,200,153,318,285:-19.5101,-19.4068,-84.5995,-13.0964,-72.4609,-77.3801,-9.35313,-68.7243,-62.4088,-73.644,-13.5481,-72.9175,-66.6019,-62.865,-78.138,0,-59.3713,-53.0564,-49.3185,-53.512,-63.3879,-2.31397,-61.6869,-55.3716,-51.6339,-55.8275,-42.2806,-66.0046 dDocent_Contig_10664 37 . T C 928.36 . AB=0.517241;ABP=3.08518;AC=4;AF=0.666667;AN=6;AO=32;CIGAR=1X;DP=47;DPB=47;DPRA=0;EPP=72.4974;EPPR=35.5824;GTI=0;LEN=1;MEANALT=1;MQM=56.8438;MQMR=60;NS=3;NUMALT=1;ODDS=3.46945e-18;PAIRED=0.9375;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=1256;QR=577;RO=15;RPL=0;RPP=72.4974;RPPR=35.5824;RPR=32;RUN=1;SAF=32;SAP=72.4974;SAR=0;SRF=15;SRP=35.5824;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:14:8,6:8:301:6:234:-11.9952,0,-23.2316 1/1:18:1,17:1:38:17:667:-56.5667,-1.62127,0 0/1:15:6,9:6:238:9:355:-27.7969,0,-17.2789 dDocent_Contig_10665 16 . T C 42.6254 . AB=0.4;ABP=3.44459;AC=1;AF=0.166667;AN=6;AO=3;CIGAR=1X;DP=46;DPB=46;DPRA=1.59091;EPP=9.52472;EPPR=96.3836;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=121;QR=1730;RO=43;RPL=0;RPP=9.52472;RPPR=96.3836;RPR=3;RUN=1;SAF=3;SAP=9.52472;SAR=0;SRF=43;SRP=96.3836;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:30:29,1:29:1160:1:41:0,-4.93633,-100.578 0/1:5:3,2:3:122:2:80:-6.08642,0,-9.86734 0/0:11:11,0:11:448:0:0:0,-3.31133,-40.6758 dDocent_Contig_10666 209 . N G 111.879 . AB=0;ABP=0;AC=2;AF=1;AN=2;AO=3;CIGAR=1X;DP=3;DPB=3;DPRA=0;EPP=9.52472;EPPR=0;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=0;NS=1;NUMALT=1;ODDS=6.68461;PAIRED=1;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=120;QR=0;RO=0;RPL=3;RPP=9.52472;RPPR=0;RPR=0;RUN=1;SAF=0;SAP=9.52472;SAR=3;SRF=0;SRP=0;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 1/1:3:0,3:0:0:3:120:-11.1873,-0.90309,0 ./.:.:.:.:.:.:.:. ./.:.:.:.:.:.:.:. dDocent_Contig_10667 41 . C T 823.9 . AB=0.195652;ABP=77.0292;AC=1;AF=0.166667;AN=6;AO=18;CIGAR=1X1M1X4M;DP=92;DPB=92;DPRA=0;EPP=42.0968;EPPR=87.6977;GTI=0;LEN=1;MEANALT=3.66667;MQM=60;MQMR=60;NS=3;NUMALT=4;ODDS=1.38778e-17;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=708;QR=1532;RO=39;RPL=0;RPP=42.0968;RPPR=87.6977;RPR=18;RUN=1;SAF=18;SAP=42.0968;SAR=0;SRF=39;SRP=87.6977;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 1|0:40:5,13,7,3,11:5:193:13,7,3,11:513,273,123,446:-61.6411,-20.9374,-32.8707,-40.7102,-14.3488,-54.4502,-52.9929,-26.6304,-46.4041,-67.9378,-26.3639,0,-19.7748,-32.0577,-38.9004 0|0:25:20,2,0,0,3:20:780:2,0,0,3:77,0,0,122:-4.05553,-3.76263,-67.2536,-10.0761,-67.8557,-74.1772,-10.0761,-67.8557,-74.1772,-74.1772,0,-57.7903,-64.1119,-64.1119,-63.2088 0|0:27:14,3,0,8,0:14:559:3,0,8,0:118,0,320,0:-22.215,-16.7114,-61.88,-26.4294,-62.7831,-72.4918,0,-36.4121,-46.1234,-43.7151,-26.4294,-62.7831,-72.4918,-46.1234,-72.4918 dDocent_Contig_10670 75 . T G 92.8206 . AB=0.333333;ABP=5.9056;AC=1;AF=0.166667;AN=6;AO=4;CIGAR=1X;DP=33;DPB=33;DPRA=1.14286;EPP=11.6962;EPPR=65.983;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=156;QR=987;RO=29;RPL=4;RPP=11.6962;RPPR=65.983;RPR=0;RUN=1;SAF=4;SAP=11.6962;SAR=0;SRF=29;SRP=65.983;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:12:8,4:8:295:4:156:-10.8049,0,-23.2859 0/0:8:8,0:8:268:0:0:0,-2.40824,-24.4394 0/0:13:13,0:13:424:0:0:0,-3.91339,-38.4689 dDocent_Contig_10671 11 . T G 147.235 . AB=0.35;ABP=6.91895;AC=2;AF=0.333333;AN=6;AO=7;CIGAR=2M1I2M1X1M1X1M;DP=28;DPB=26.625;DPRA=1.25;EPP=18.2106;EPPR=42.0968;GTI=0;LEN=1;MEANALT=2;MQM=40;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=269;QR=692;RO=18;RPL=0;RPP=18.2106;RPPR=42.0968;RPR=7;RUN=1;SAF=7;SAP=18.2106;SAR=0;SRF=18;SRP=42.0968;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|1:12:5,6:5:188:6:231:-16.2098,0,-13.604 0|1:8:5,1:5:197:1:38:-1.41978,0,-15.9255 0|0:8:8,0:8:307:0:0:0,-2.40824,-27.9889 dDocent_Contig_10674 25 . T G 74.2764 . AB=0.16129;ABP=33.9012;AC=2;AF=0.333333;AN=6;AO=5;CIGAR=1X;DP=54;DPB=54;DPRA=0.673913;EPP=13.8677;EPPR=109.412;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=1.73472e-18;PAIRED=0.6;PAIREDR=0.734694;PAO=0;PQA=0;PQR=0;PRO=0;QA=203;QR=1954;RO=49;RPL=0;RPP=13.8677;RPPR=109.412;RPR=5;RUN=1;SAF=5;SAP=13.8677;SAR=0;SRF=49;SRP=109.412;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:23:23,0:23:906:0:0:0,-6.92369,-81.8388 0/1:12:11,1:11:439:1:41:-0.482207,0,-36.2512 0/1:19:15,4:15:609:4:162:-9.24718,0,-49.4274 dDocent_Contig_10675 107 . N T 708.034 . AB=0;ABP=0;AC=6;AF=1;AN=6;AO=22;CIGAR=1X;DP=22;DPB=22;DPRA=0;EPP=50.7827;EPPR=0;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=0;NS=3;NUMALT=1;ODDS=0;PAIRED=0.409091;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=770;QR=0;RO=0;RPL=0;RPP=50.7827;RPPR=0;RPR=22;RUN=1;SAF=0;SAP=50.7827;SAR=22;SRF=0;SRP=0;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 1/1:3:0,3:0:0:3:107:-9.98217,-0.90309,0 1/1:11:0,11:0:0:11:385:-34.9862,-3.31133,0 1/1:8:0,8:0:0:8:278:-25.3577,-2.40824,0 dDocent_Contig_10676 24 . A G 349.835 . AB=0.482759;ABP=3.08518;AC=2;AF=0.333333;AN=6;AO=14;CIGAR=1X;DP=30;DPB=30;DPRA=14.5;EPP=33.4109;EPPR=37.7539;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=1.73472e-18;PAIRED=0.5;PAIREDR=0.875;PAO=0;PQA=0;PQR=0;PRO=0;QA=517;QR=644;RO=16;RPL=0;RPP=33.4109;RPPR=37.7539;RPR=14;RUN=1;SAF=14;SAP=33.4109;SAR=0;SRF=16;SRP=37.7539;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:17:9,8:9:360:8:298:-22.0543,0,-27.6431 0/0:1:1,0:1:41:0:0:0,-0.30103,-4.09457 0/1:12:6,6:6:243:6:219:-16.4513,0,-18.6356 dDocent_Contig_10679 9 . A T 568.239 . AB=0.333333;ABP=20.3821;AC=3;AF=0.5;AN=6;AO=24;CIGAR=1X;DP=72;DPB=72;DPRA=0;EPP=55.1256;EPPR=107.241;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=907;QR=1832;RO=48;RPL=0;RPP=55.1256;RPPR=107.241;RPR=24;RUN=1;SAF=24;SAP=55.1256;SAR=0;SRF=48;SRP=107.241;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:37:18,19:18:701:19:714:-53.4483,0,-52.286 0/1:10:9,1:9:340:1:37:-0.687529,0,-27.9438 0/1:25:21,4:21:791:4:156:-6.89154,0,-63.983 dDocent_Contig_10680 10 . G A 50.8913 . AB=0.125;ABP=51.8684;AC=1;AF=0.166667;AN=6;AO=5;CIGAR=1X;DP=61;DPB=61;DPRA=3.80952;EPP=13.8677;EPPR=124.613;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=203;QR=2223;RO=56;RPL=0;RPP=13.8677;RPPR=124.613;RPR=5;RUN=1;SAF=5;SAP=13.8677;SAR=0;SRF=56;SRP=124.613;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:40:35,5:35:1404:5:203:-6.61165,0,-114.57 0/0:2:2,0:2:79:0:0:0,-0.60206,-7.49724 0/0:19:19,0:19:740:0:0:0,-5.71957,-66.9187 dDocent_Contig_10681 7 . C T 1446.32 . AB=0.125;ABP=32.3252;AC=1;AF=0.166667;AN=6;AO=3;CIGAR=1X8M1X9M;DP=127;DPB=127;DPRA=0;EPP=9.52472;EPPR=37.7539;GTI=0;LEN=1;MEANALT=11;MQM=60;MQMR=60;NS=3;NUMALT=7;ODDS=0;PAIRED=0;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=117;QR=628;RO=16;RPL=0;RPP=9.52472;RPPR=37.7539;RPR=3;RUN=1;SAF=3;SAP=9.52472;SAR=0;SRF=16;SRP=37.7539;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|0:75:7,8,0,18,0,6,4,22:7:277:8,0,18,0,6,4,22:113,0,713,0,238,148,858:-104.331,-100.705,-121.097,-106.438,-123.505,-129.241,-47.7353,-64.8135,-70.5421,-65.1236,-106.438,-123.505,-129.241,-70.5421,-129.241,-86.8423,-103.912,-109.646,-50.9436,-109.646,-107.84,-94.3328,-111.401,-117.136,-58.4353,-117.136,-97.5406,-115.932,-35.9102,-52.9923,-58.7181,0,-58.7181,-39.1187,-46.611,-52.0955 1|0:24:0,5,3,2,3,1,1,5:0:0:5,3,2,3,1,1,5:37,117,80,114,41,41,195:-25.7106,-25.076,-23.5708,-16.0743,-15.4442,-15.1712,-19.1076,-18.4758,-9.46738,-18.5056,-25.0227,-24.4074,-15.3881,-18.4207,-24.1196,-22.32,-21.6866,-12.6818,-15.7158,-21.6325,-22.0189,-22.32,-21.6866,-12.6818,-15.7158,-21.6325,-18.9287,-22.0189,-9.64855,-9.02143,0,-3.03782,-8.96313,-6.25421,-6.25421,-8.1434 0|0:28:9,2,0,7,0,3,0,5:9:351:2,0,7,0,3,0,5:12,0,277,0,114,0,204:-20.1131,-22.8185,-51.069,-22.8224,-51.6711,-51.6868,0,-28.872,-28.8795,-26.7723,-22.8224,-51.6711,-51.6868,-28.8795,-51.6868,-13.4681,-42.3232,-42.3359,-19.5261,-42.3359,-41.4328,-22.8224,-51.6711,-51.6868,-28.8795,-51.6868,-42.3359,-51.6868,-5.97093,-34.8352,-34.8459,-12.0311,-34.8459,-25.493,-34.8459,-33.3407 dDocent_Contig_10682 7 . C T 1756.22 . AB=0.746835;ABP=44.818;AC=3;AF=0.5;AN=6;AO=59;CIGAR=1X;DP=79;DPB=79;DPRA=0;EPP=131.127;EPPR=46.4397;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=2266;QR=772;RO=20;RPL=0;RPP=131.127;RPPR=46.4397;RPR=59;RUN=1;SAF=59;SAP=131.127;SAR=0;SRF=20;SRP=46.4397;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:46:9,37:9:351:37:1418:-114.053,0,-18.1044 0/1:13:7,6:7:267:6:229:-17.0623,0,-20.4795 0/1:20:4,16:4:154:16:619:-50.029,0,-8.21299 dDocent_Contig_10683 99 . N G 91.4477 . AB=0;ABP=0;AC=2;AF=1;AN=2;AO=3;CIGAR=2X;DP=3;DPB=18.5;DPRA=0;EPP=9.52472;EPPR=0;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=0;NS=1;NUMALT=1;ODDS=6.68461;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=98;QR=0;RO=0;RPL=3;RPP=9.52472;RPPR=0;RPR=0;RUN=1;SAF=3;SAP=9.52472;SAR=0;SRF=0;SRP=0;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL .:.:.:.:.:.:.:. 1|1:3:0,3:0:0:3:98:-9.14423,-0.90309,0 .:.:.:.:.:.:.:. dDocent_Contig_10684 10 . G C 326.006 . AB=0.25;ABP=33.4109;AC=1;AF=0.166667;AN=6;AO=15;CIGAR=1X;DP=184;DPB=184;DPRA=22.5;EPP=35.5824;EPPR=369.989;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=607;QR=6765;RO=169;RPL=0;RPP=35.5824;RPPR=369.989;RPR=15;RUN=1;SAF=15;SAP=35.5824;SAR=0;SRF=169;SRP=369.989;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:124:123,1:123:4930:1:41:0,-33.2332,-439.49 0/0:4:4,0:4:152:0:0:0,-1.20412,-14.0465 0/1:56:42,14:42:1683:14:566:-34.4244,0,-134.837 dDocent_Contig_10685 7 . C T 883.491 . AB=0.507937;ABP=3.04477;AC=2;AF=0.333333;AN=6;AO=32;CIGAR=1X;DP=65;DPB=65;DPRA=15.75;EPP=72.4974;EPPR=74.6689;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=1224;QR=1269;RO=33;RPL=0;RPP=72.4974;RPPR=74.6689;RPR=32;RUN=1;SAF=32;SAP=72.4974;SAR=0;SRF=33;SRP=74.6689;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:35:15,20:15:573:20:766:-58.7309,0,-41.3754 0/0:2:2,0:2:76:0:0:0,-0.60206,-7.21467 0/1:28:16,12:16:620:12:458:-33.1407,0,-47.7111 dDocent_Contig_10687 107 . N G 56.2421 . AB=0;ABP=0;AC=2;AF=1;AN=2;AO=3;CIGAR=1X;DP=3;DPB=3;DPRA=0;EPP=3.73412;EPPR=0;GTI=0;LEN=1;MEANALT=1;MQM=20.3333;MQMR=0;NS=1;NUMALT=1;ODDS=6.68461;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=107;QR=0;RO=0;RPL=0;RPP=9.52472;RPPR=0;RPR=3;RUN=1;SAF=1;SAP=3.73412;SAR=2;SRF=0;SRP=0;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 1/1:3:0,3:0:0:3:107:-5.62366,-0.90309,0 ./.:.:.:.:.:.:.:. ./.:.:.:.:.:.:.:. dDocent_Contig_10688 63 . T G 45.9368 . AB=0.214286;ABP=12.937;AC=1;AF=0.166667;AN=6;AO=3;CIGAR=1X;DP=30;DPB=30;DPRA=1.75;EPP=9.52472;EPPR=61.6401;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=0;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=114;QR=1044;RO=27;RPL=3;RPP=9.52472;RPPR=61.6401;RPR=0;RUN=1;SAF=3;SAP=9.52472;SAR=0;SRF=27;SRP=61.6401;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:10:10,0:10:387:0:0:0,-3.0103,-35.1833 0/0:6:6,0:6:233:0:0:0,-1.80618,-21.3391 0/1:14:11,3:11:424:3:114:-6.41756,0,-34.2984 dDocent_Contig_10689 1 . N G 147.041 . AB=0;ABP=0;AC=4;AF=1;AN=4;AO=4;CIGAR=1X;DP=4;DPB=4;DPRA=0;EPP=11.6962;EPPR=0;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=0;NS=2;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=152;QR=0;RO=0;RPL=0;RPP=11.6962;RPPR=0;RPR=4;RUN=1;SAF=4;SAP=11.6962;SAR=0;SRF=0;SRP=0;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 1/1:3:0,3:0:0:3:118:-11.0027,-0.90309,0 1/1:1:0,1:0:0:1:34:-3.39891,-0.30103,0 ./.:.:.:.:.:.:.:. dDocent_Contig_10691 7 . C T 77.9084 . AB=0.140351;ABP=67.0497;AC=2;AF=0.333333;AN=6;AO=11;CIGAR=1X;DP=93;DPB=93;DPRA=0;EPP=26.8965;EPPR=181.071;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=6.93889e-18;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=422;QR=3172;RO=82;RPL=0;RPP=26.8965;RPPR=181.071;RPR=11;RUN=1;SAF=11;SAP=26.8965;SAR=0;SRF=82;SRP=181.071;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:46:40,6:40:1548:6:230:-7.21951,0,-125.742 0/1:11:9,2:9:351:2:78:-4.09214,0,-28.6405 0/0:36:33,3:33:1273:3:114:0,-0.204861,-104.229 dDocent_Contig_10692 17 . G A 237.195 . AB=0.333333;ABP=10.2485;AC=2;AF=0.333333;AN=6;AO=11;CIGAR=1X;DP=46;DPB=46;DPRA=0;EPP=26.8965;EPPR=79.0118;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=3.46945e-18;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=436;QR=1409;RO=35;RPL=0;RPP=26.8965;RPPR=79.0118;RPR=11;RUN=1;SAF=11;SAP=26.8965;SAR=0;SRF=35;SRP=79.0118;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:24:16,8:16:647:8:323:-22.2139,0,-51.3388 0/1:6:4,2:4:164:2:72:-5.02814,0,-13.3437 0/0:16:15,1:15:598:1:41:0,-0.721913,-50.0632 dDocent_Contig_10693 20 . C T 47.3218 . AB=0.1875;ABP=16.582;AC=1;AF=0.166667;AN=6;AO=4;CIGAR=1X;DP=47;DPB=47;DPRA=1.30769;EPP=11.6962;EPPR=96.3836;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=163;QR=1735;RO=43;RPL=0;RPP=11.6962;RPPR=96.3836;RPR=4;RUN=1;SAF=4;SAP=11.6962;SAR=0;SRF=43;SRP=96.3836;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:18:17,1:17:689:1:41:0,-1.32397,-58.243 0/0:13:13,0:13:526:0:0:0,-3.91339,-47.687 0/1:16:13,3:13:520:3:122:-6.55601,0,-42.3292 dDocent_Contig_10695 18 . C A 937.233 . AB=0.673469;ABP=15.8176;AC=3;AF=0.5;AN=6;AO=33;CIGAR=1X;DP=49;DPB=49;DPRA=0;EPP=74.6689;EPPR=37.7539;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=1255;QR=620;RO=16;RPL=0;RPP=74.6689;RPPR=37.7539;RPR=33;RUN=1;SAF=33;SAP=74.6689;SAR=0;SRF=16;SRP=37.7539;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:24:5,19:5:198:19:729:-58.7137,0,-10.9715 0/1:13:8,5:8:307:5:193:-13.8276,0,-24.0774 0/1:12:3,9:3:115:9:333:-26.7049,0,-7.11267 dDocent_Contig_10696 12 . C T 612.292 . AB=0.338028;ABP=19.1893;AC=3;AF=0.5;AN=6;AO=24;CIGAR=1X;DP=71;DPB=71;DPRA=0;EPP=55.1256;EPPR=105.07;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=0.916667;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=967;QR=1895;RO=47;RPL=0;RPP=55.1256;RPPR=105.07;RPR=24;RUN=1;SAF=24;SAP=55.1256;SAR=0;SRF=47;SRP=105.07;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:41:24,17:24:980:17:685:-49.6326,0,-76.1522 0/1:8:6,2:6:234:2:79:-5.089,0,-19.0196 0/1:22:17,5:17:681:5:203:-12.0304,0,-54.9937 dDocent_Contig_10697 22 . C T 98.6108 . AB=0.227273;ABP=17.2236;AC=2;AF=0.333333;AN=6;AO=5;CIGAR=1X;DP=24;DPB=24;DPRA=5.5;EPP=13.8677;EPPR=44.2683;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=1.73472e-18;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=199;QR=766;RO=19;RPL=0;RPP=13.8677;RPPR=44.2683;RPR=5;RUN=1;SAF=5;SAP=13.8677;SAR=0;SRF=19;SRP=44.2683;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:2:2,0:2:79:0:0:0,-0.60206,-7.49724 0/1:10:6,4:6:243:4:159:-11.6811,0,-19.2379 0/1:12:11,1:11:444:1:40:-0.383319,0,-36.7029 dDocent_Contig_10699 79 . T C 1156.55 . AB=0.628571;ABP=13.0611;AC=3;AF=0.5;AN=6;AO=44;CIGAR=1X;DP=70;DPB=70;DPRA=0;EPP=98.5551;EPPR=59.4686;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=3.46945e-18;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=1569;QR=948;RO=26;RPL=44;RPP=98.5551;RPPR=59.4686;RPR=0;RUN=1;SAF=44;SAP=98.5551;SAR=0;SRF=26;SRP=59.4686;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:43:17,26:17:626:26:942:-72.1504,0,-43.7316 0/1:4:1,3:1:37:3:108:-8.87001,0,-2.49371 0/1:23:8,15:8:285:15:519:-40.113,0,-19.0707 dDocent_Contig_10700 8 . T A 40.8402 . AB=0.146341;ABP=47.552;AC=3;AF=0.5;AN=6;AO=6;CIGAR=1X;DP=41;DPB=41;DPRA=0;EPP=16.0391;EPPR=79.0118;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=228;QR=1328;RO=35;RPL=0;RPP=16.0391;RPPR=79.0118;RPR=6;RUN=1;SAF=6;SAP=16.0391;SAR=0;SRF=35;SRP=79.0118;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:20:17,3:17:652:3:113:-4.51881,0,-52.9957 0/1:18:16,2:16:598:2:76:-1.79613,0,-48.7381 0/1:3:2,1:2:78:1:39:-2.99347,0,-6.50038 dDocent_Contig_10702 56 . G A 798.176 . AB=0.121951;ABP=53.9075;AC=0;AF=0;AN=6;AO=5;CIGAR=1X2M1X;DP=150;DPB=150;DPRA=0;EPP=13.8677;EPPR=183.243;GTI=0;LEN=1;MEANALT=3;MQM=60;MQMR=60;NS=3;NUMALT=3;ODDS=2.77556e-17;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=158;QR=2697;RO=83;RPL=5;RPP=13.8677;RPPR=183.243;RPR=0;RUN=1;SAF=5;SAP=13.8677;SAR=0;SRF=83;SRP=183.243;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|0:76:50,0,19,7:50:1606:0,19,7:0,612,241:-34.2764,-49.3279,-178.768,0,-129.425,-123.705,-29.747,-159.191,-109.847,-157.084 0|0:33:25,0,4,4:25:834:0,4,4:0,128,138:-3.69814,-11.2239,-78.736,-0.924279,-68.4257,-67.2216,0,-67.523,-57.2128,-66.3189 0|0:41:8,5,13,15:8:257:5,13,15:158,395,482:-47.3463,-37.0434,-56.2542,-18.137,-26.1418,-34.9381,-10.8978,-18.9045,0,-27.1008 dDocent_Contig_10703 117 . A T 473.969 . AB=0.303797;ABP=29.4253;AC=3;AF=0.5;AN=6;AO=24;CIGAR=3X2M2X3M1X;DP=79;DPB=79;DPRA=0;EPP=39.2015;EPPR=9.74743;GTI=0;LEN=1;MEANALT=3.33333;MQM=44.2917;MQMR=59.6923;NS=3;NUMALT=3;ODDS=0;PAIRED=0;PAIREDR=0.692308;PAO=0;PQA=0;PQR=0;PRO=0;QA=845;QR=1421;RO=39;RPL=0;RPP=55.1256;RPPR=87.6977;RPR=24;RUN=1;SAF=2;SAP=39.2015;SAR=22;SRF=14;SRP=9.74743;SRR=25;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|1:40:15,15,9,0:15:570:15,9,0:526,312,0:-36.6529,0,-42.2178,-15.8065,-21.3852,-59.8319,-41.1684,-46.7333,-62.5412,-87.8985 0|1:18:11,4,0,2:11:366:4,0,2:143,0,82:-6.3878,0,-28.3815,-9.69913,-29.5856,-39.3158,-2.9006,-22.8061,-32.5381,-31.9361 0|1:21:13,5,0,1:13:485:5,0,1:176,0,41:-9.87881,0,-38.2534,-13.7922,-39.7585,-53.5251,-10.3964,-36.3712,-50.1383,-49.8373 dDocent_Contig_10704 9 . A G 162.964 . AB=0.285714;ABP=5.80219;AC=2;AF=0.333334;AN=6;AO=2;CIGAR=1X3M;DP=46;DPB=46;DPRA=0.241379;EPP=7.35324;EPPR=83.3548;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=2;ODDS=0;PAIRED=0;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=70;QR=1430;RO=37;RPL=0;RPP=7.35324;RPPR=83.3548;RPR=2;RUN=1;SAF=2;SAP=7.35324;SAR=0;SRF=37;SRP=83.3548;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|0:29:27,2,0:27:1057:2,0:78,0:0,-1.32657,-88.0288,-8.12781,-88.6309,-95.0424 0|1:7:5,0,2:5:177:0,2:0,70:-4.54019,-6.04534,-20.4633,0,-14.7689,-14.1669 0|1:10:5,5,0:5:196:5,0:199,0:-15.2786,0,-15.0046,-16.7838,-16.5098,-32.8989 dDocent_Contig_10705 107 . N G 3244.07 . AB=0.752941;ABP=50.2462;AC=6;AF=1;AN=6;AO=105;CIGAR=1X4M1X3M;DP=132;DPB=131.556;DPRA=0;EPP=231.015;EPPR=0;GTI=0;LEN=1;MEANALT=4.33333;MQM=43.1333;MQMR=0;NS=3;NUMALT=3;ODDS=6.93889e-18;PAIRED=1;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=3431;QR=0;RO=0;RPL=0;RPP=231.015;RPPR=0;RPR=105;RUN=1;SAF=0;SAP=231.015;SAR=105;SRF=0;SRP=0;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 1|1:47:0,0,10,36:0:0:0,10,36:0,347,1219:-123.402,-123.402,-123.402,-96.199,-96.199,-93.1887,-27.207,-27.207,0,-16.37 1|1:38:0,2,7,28:0:0:2,7,28:25,228,922:-90.691,-89.5739,-88.9719,-72.8115,-71.697,-70.7043,-18.0392,-16.9485,0,-9.61039 1|1:47:0,2,1,41:0:0:2,1,41:66,35,1290:-113.836,-108.532,-107.93,-111.094,-105.79,-110.793,-12.3422,-7.01971,-9.5909,0 dDocent_Contig_10706 39 . G A 321.923 . AB=0.371429;ABP=8.03571;AC=3;AF=0.5;AN=6;AO=13;CIGAR=1X3M1X;DP=35;DPB=35;DPRA=0;EPP=31.2394;EPPR=48.6112;GTI=0;LEN=1;MEANALT=1.33333;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=524;QR=829;RO=21;RPL=0;RPP=31.2394;RPPR=48.6112;RPR=13;RUN=1;SAF=13;SAP=31.2394;SAR=0;SRF=21;SRP=48.6112;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|1:18:13,4:13:517:4:163:-9.57166,0,-41.3987 0|1:10:3,7:3:118:7:279:-22.4711,0,-7.99259 0|1:7:5,2:5:194:2:82:-5.67247,0,-15.7231 dDocent_Contig_10707 50 . G T 71.6091 . AB=0.122807;ABP=73.4498;AC=1;AF=0.166667;AN=6;AO=7;CIGAR=1X;DP=95;DPB=95;DPRA=3;EPP=18.2106;EPPR=194.1;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=283;QR=3477;RO=88;RPL=7;RPP=18.2106;RPPR=194.1;RPR=0;RUN=1;SAF=7;SAP=18.2106;SAR=0;SRF=88;SRP=194.1;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:57:50,7:50:1957:7:283:-8.68379,0,-159.166 0/0:26:26,0:26:1034:0:0:0,-7.82678,-93.3543 0/0:12:12,0:12:486:0:0:0,-3.61236,-44.0918 dDocent_Contig_10708 9 . A G 510.425 . AB=0.190789;ABP=129.241;AC=3;AF=0.5;AN=6;AO=29;CIGAR=1X;DP=152;DPB=152;DPRA=0;EPP=65.983;EPPR=270.101;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=0.37931;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=1125;QR=4728;RO=123;RPL=0;RPP=65.983;RPPR=270.101;RPR=29;RUN=1;SAF=29;SAP=65.983;SAR=0;SRF=123;SRP=270.101;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:84:64,20:64:2461:20:780:-45.2408,0,-196.408 0/1:22:19,3:19:736:3:117:-4.28772,0,-59.9485 0/1:46:40,6:40:1531:6:228:-7.03608,0,-124.209 dDocent_Contig_10709 75 . T A 369.273 . AB=0.216495;ABP=70.7289;AC=3;AF=0.5;AN=6;AO=21;CIGAR=1X;DP=97;DPB=97;DPRA=0;EPP=48.6112;EPPR=168.042;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=778;QR=2829;RO=76;RPL=21;RPP=48.6112;RPPR=168.042;RPR=0;RUN=1;SAF=21;SAP=48.6112;SAR=0;SRF=76;SRP=168.042;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:58:47,11:47:1771:11:426:-21.235,0,-142.19 0/1:8:7,1:7:261:1:39:-1.48832,0,-21.4362 0/1:31:22,9:22:797:9:313:-19.1728,0,-62.7218 dDocent_Contig_10710 122 . A G 352.103 . AB=0.435897;ABP=4.40227;AC=3;AF=0.5;AN=6;AO=17;CIGAR=1X;DP=39;DPB=39;DPRA=0;EPP=39.9253;EPPR=50.7827;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=572;QR=781;RO=22;RPL=0;RPP=39.9253;RPPR=50.7827;RPR=17;RUN=1;SAF=0;SAP=39.9253;SAR=17;SRF=0;SRP=50.7827;SRR=22;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:21:12,9:12:426:9:300:-21.0015,0,-32.3562 0/1:7:3,4:3:108:4:132:-10.0984,0,-7.96796 0/1:11:7,4:7:247:4:140:-9.63325,0,-19.262 dDocent_Contig_10711 24 . G A 125.199 . AB=0.102564;ABP=56.5176;AC=3;AF=0.5;AN=6;AO=4;CIGAR=1X1M;DP=39;DPB=39;DPRA=0;EPP=11.6962;EPPR=53.2759;GTI=0;LEN=1;MEANALT=2;MQM=60;MQMR=60;NS=3;NUMALT=2;ODDS=0;PAIRED=1;PAIREDR=0.925926;PAO=0;PQA=0;PQR=0;PRO=0;QA=162;QR=1070;RO=27;RPL=0;RPP=11.6962;RPPR=61.6401;RPR=4;RUN=1;SAF=4;SAP=11.6962;SAR=0;SRF=26;SRP=53.2759;SRR=1;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|1:19:13,4,2:13:522:4,2:157,81:-8.9904,0,-41.8049,-6.2205,-36.3294,-48.6373 0|1:10:7,2,1:7:268:2,1:81,40:-4.57525,0,-21.3741,-3.38902,-18.679,-25.062 0|1:10:7,2,1:7:280:2,1:80,41:-4.47615,0,-22.4543,-3.19598,-19.671,-25.9599 dDocent_Contig_10712 12 . T A 1330.52 . AB=0.149701;ABP=181.006;AC=0;AF=0;AN=6;AO=25;CIGAR=2M1X6M;DP=167;DPB=166.667;DPRA=0;EPP=57.2971;EPPR=161.528;GTI=0;LEN=1;MEANALT=3;MQM=60;MQMR=60;NS=3;NUMALT=3;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=1005;QR=2893;RO=73;RPL=0;RPP=57.2971;RPPR=161.528;RPR=25;RUN=1;SAF=25;SAP=57.2971;SAR=0;SRF=73;SRP=161.528;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|0:79:33,1,16,28:33:1298:1,16,28:41,640,977:-65.4839,-72.0354,-178.514,-22.6795,-126.092,-124.657,0,-103.381,-54.0446,-98.3341 0|0:34:11,2,4,17:11:443:2,4,17:36,162,495:-32.0928,-33.3141,-69.263,-22.0194,-56.496,-57.3829,0,-34.4937,-23.1983,-31.4488 0|0:54:29,0,5,20:29:1152:0,5,20:0,203,665:-40.9979,-49.7278,-144.605,-32.9663,-127.858,-126.353,0,-94.8333,-78.0896,-88.8127 dDocent_Contig_10713 12 . T A 92.0968 . AB=0.0277778;ABP=281.924;AC=0;AF=0;AN=6;AO=4;CIGAR=1M1X2M;DP=154;DPB=154;DPRA=0;EPP=11.6962;EPPR=259.244;GTI=0;LEN=1;MEANALT=4.5;MQM=59;MQMR=60;NS=3;NUMALT=5;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=163;QR=4722;RO=118;RPL=0;RPP=11.6962;RPPR=259.244;RPR=4;RUN=1;SAF=4;SAP=11.6962;SAR=0;SRF=118;SRP=259.244;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|0:93:72,0,1,5,8,6:72:2880:0,1,5,8,6:0,41,205,320,238:-4.68363,-26.3578,-263.591,-22.9733,-260.207,-259.906,-9.51322,-246.748,-243.364,-245.243,0,-237.232,-233.848,-220.389,-234.824,-6.77004,-244.002,-240.617,-227.159,-217.643,-242.195 0|0:10:7,3,0,0,0,0:7:276:3,0,0,0,0:118,0,0,0,0:-7.99242,0,-22.1979,-10.0996,-23.101,-32.8074,-10.0996,-23.101,-32.8074,-32.8074,-10.0996,-23.101,-32.8074,-32.8074,-32.8074,-10.0996,-23.101,-32.8074,-32.8074,-32.8074,-32.8074 0|0:51:39,4,3,3,2,0:39:1566:4,3,3,2,0:162,122,122,82,0:-1.61746,0,-127.829,-3.30167,-118.977,-131.433,-3.31643,-118.992,-122.294,-131.447,-6.58876,-122.265,-125.567,-125.582,-135.021,-13.3576,-129.033,-132.336,-132.35,-135.624,-142.392 dDocent_Contig_10714 66 . C A 206.177 . AB=0.391304;ABP=5.3706;AC=2;AF=0.333333;AN=6;AO=9;CIGAR=1X;DP=30;DPB=30;DPRA=1.64286;EPP=22.5536;EPPR=48.6112;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=0.555556;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=336;QR=786;RO=21;RPL=9;RPP=22.5536;RPPR=48.6112;RPR=0;RUN=1;SAF=9;SAP=22.5536;SAR=0;SRF=21;SRP=48.6112;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:6:1,5:1:39:5:193:-15.9352,0,-2.09038 0/0:7:7,0:7:272:0:0:0,-2.10721,-24.8455 0/1:17:13,4:13:475:4:143:-8.10137,0,-37.9611 dDocent_Contig_10715 13 . C T 193.337 . AB=0.142857;ABP=111.584;AC=2;AF=0.333333;AN=6;AO=14;CIGAR=4M1X;DP=120;DPB=118.8;DPRA=2.22727;EPP=33.4109;EPPR=228.843;GTI=0;LEN=1;MEANALT=1.5;MQM=60;MQMR=60;NS=3;NUMALT=2;ODDS=0;PAIRED=1;PAIREDR=0.971154;PAO=0;PQA=0;PQR=0;PRO=0;QA=571;QR=4034;RO=104;RPL=0;RPP=33.4109;RPPR=228.843;RPR=14;RUN=1;SAF=14;SAP=33.4109;SAR=0;SRF=104;SRP=228.843;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|1:63:54,0,9:54:2109:0,9:0,366:-14.3403,-30.5959,-203.954,0,-173.762,-171.052 0|0:22:22,0,0:22:840:0,0:0,0:0,-6.62266,-75.9162,-6.62266,-75.9162,-75.9162 0|1:35:28,2,5:28:1085:2,5:75,205:-8.51635,-10.8116,-99.3229,0,-83.0012,-87.6388 dDocent_Contig_10717 31 . T G 40.2219 . AB=0.1875;ABP=16.582;AC=1;AF=0.25;AN=4;AO=3;CIGAR=1X;DP=23;DPB=23;DPRA=2.28571;EPP=9.52472;EPPR=46.4397;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=2;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=113;QR=797;RO=20;RPL=0;RPP=9.52472;RPPR=46.4397;RPR=3;RUN=1;SAF=3;SAP=9.52472;SAR=0;SRF=20;SRP=46.4397;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:16:13,3:13:512:3:113:-5.7211,0,-41.6065 ./.:.:.:.:.:.:.:. 0/0:7:7,0:7:285:0:0:0,-2.10721,-26.0244 dDocent_Contig_10718 71 . C T 182.854 . AB=0.533333;ABP=3.15506;AC=1;AF=0.166667;AN=6;AO=8;CIGAR=1X;DP=24;DPB=24;DPRA=3.33333;EPP=20.3821;EPPR=37.7539;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=270;QR=556;RO=16;RPL=8;RPP=20.3821;RPPR=37.7539;RPR=0;RUN=1;SAF=8;SAP=20.3821;SAR=0;SRF=16;SRP=37.7539;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:7:7,0:7:259:0:0:0,-2.10721,-23.6648 0/0:2:2,0:2:78:0:0:0,-0.60206,-7.40347 0/1:15:7,8:7:219:8:270:-20.1089,0,-15.4973 dDocent_Contig_10719 59 . T C 516.599 . AB=0.47619;ABP=3.21711;AC=2;AF=0.5;AN=4;AO=20;CIGAR=1X2M1X;DP=42;DPB=42;DPRA=0;EPP=46.4397;EPPR=50.7827;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=2;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=748;QR=712;RO=22;RPL=20;RPP=46.4397;RPPR=50.7827;RPR=0;RUN=1;SAF=20;SAP=46.4397;SAR=0;SRF=0;SRP=50.7827;SRR=22;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|1:28:15,13:15:483:13:499:-36.8222,0,-35.3509 .:.:.:.:.:.:.:. 0|1:14:7,7:7:229:7:249:-18.5367,0,-16.7163 dDocent_Contig_10720 37 . G A 65.1078 . AB=0.166667;ABP=31.9633;AC=2;AF=0.333333;AN=6;AO=5;CIGAR=1X;DP=31;DPB=31;DPRA=15;EPP=13.8677;EPPR=59.4686;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=0.6;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=203;QR=1029;RO=26;RPL=0;RPP=13.8677;RPPR=59.4686;RPR=5;RUN=1;SAF=5;SAP=13.8677;SAR=0;SRF=26;SRP=59.4686;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:16:13,3:13:517:3:121:-6.46372,0,-42.057 0/0:1:1,0:1:35:0:0:0,-0.30103,-3.49863 0/1:14:12,2:12:477:2:82:-3.56526,0,-39.0669 dDocent_Contig_10721 21 . G C 3645.82 . AB=0.410042;ABP=19.8097;AC=6;AF=1;AN=6;AO=98;CIGAR=1X11M;DP=239;DPB=243.5;DPRA=0;EPP=215.815;EPPR=68.1545;GTI=0;LEN=1;MEANALT=5.33333;MQM=60;MQMR=60;NS=3;NUMALT=6;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=3899;QR=1188;RO=30;RPL=0;RPP=215.815;RPPR=68.1545;RPR=98;RUN=1;SAF=98;SAP=215.815;SAR=0;SRF=30;SRP=68.1545;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 1|1:134:13,0,18,21,28,12,41:13:518:0,18,21,28,12,41:0,723,813,1120,456,1642:-180.956,-184.87,-227.527,-125.292,-167.949,-162.531,-118.106,-160.763,-101.185,-154.441,-92.6101,-135.268,-75.6894,-68.5038,-126.839,-147.481,-190.138,-130.56,-123.374,-97.8788,-186.526,-49.6032,-92.2609,-32.6822,-25.4972,0,-54.8722,-79.9186 1|1:26:4,3,2,5,0,0,12:4:159:3,2,5,0,0,12:121,77,181,0,0,479:-39.9249,-31.1527,-43.3422,-34.8072,-37.9234,-47.2972,-26.3609,-29.4766,-33.1307,-37.9465,-41.1291,-44.2453,-47.8992,-39.4517,-54.2211,-41.1291,-44.2453,-47.8992,-39.4517,-54.2211,-54.2211,-1.66788,-4.78465,-8.44154,0,-14.7641,-14.7641,-11.1517 1|1:79:13,0,1,16,1,0,45:13:511:0,1,16,1,0,45:0,40,597,41,0,1778:-149.22,-153.134,-195.165,-149.838,-191.869,-191.568,-104.268,-146.299,-143.003,-141.482,-149.749,-191.78,-188.485,-142.914,-191.479,-153.134,-195.165,-191.869,-146.299,-191.78,-195.165,-6.82595,-48.8647,-45.5689,0,-45.4796,-48.8647,-35.3183 dDocent_Contig_10722 28 . G A 782.823 . AB=0.0740741;ABP=88.0998;AC=0;AF=0;AN=6;AO=4;CIGAR=2X2M1X;DP=122;DPB=122;DPRA=0;EPP=11.6962;EPPR=163.699;GTI=0;LEN=1;MEANALT=4;MQM=60;MQMR=60;NS=3;NUMALT=3;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=161;QR=2753;RO=74;RPL=0;RPP=11.6962;RPPR=163.699;RPR=4;RUN=1;SAF=4;SAP=11.6962;SAR=0;SRF=74;SRP=163.699;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|0:61:45,3,0,13:45:1695:3,0,13:119,0,501:-27.582,-31.3302,-169.317,-41.1284,-170.22,-180.017,0,-129.081,-138.878,-134.964 0|0:7:4,0,0,3:4:155:0,0,3:0,0,114:-8.52427,-9.72839,-22.4666,-9.72839,-22.4666,-22.4666,0,-13.1212,-13.1212,-12.2181 0|0:54:25,17,4,7:25:903:17,4,7:671,161,263:-47.6989,0,-68.5694,-41.9526,-60.4131,-114.432,-33.6823,-52.1389,-94.0903,-105.255 dDocent_Contig_10723 119 . A C 60.3377 . AB=0.238095;ABP=15.5221;AC=1;AF=0.166667;AN=6;AO=10;CIGAR=1X;DP=98;DPB=98;DPRA=1.72727;EPP=24.725;EPPR=194.1;GTI=0;LEN=1;MEANALT=1;MQM=43.8;MQMR=58.7614;NS=3;NUMALT=1;ODDS=0;PAIRED=0;PAIREDR=0.772727;PAO=0;PQA=0;PQR=0;PRO=0;QA=329;QR=3012;RO=88;RPL=0;RPP=24.725;RPPR=194.1;RPR=10;RUN=1;SAF=0;SAP=24.725;SAR=10;SRF=0;SRP=194.1;SRR=88;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:55:50,5:50:1718:5:172:0,-1.02395,-139.374 0/1:21:16,5:16:545:5:157:-7.85754,0,-41.6681 0/0:22:22,0:22:749:0:0:0,-6.62266,-67.7257 dDocent_Contig_10724 17 . T A 79.1103 . AB=0;ABP=0;AC=0;AF=0;AN=6;AO=4;CIGAR=4M1I2M1X2M;DP=61;DPB=61;DPRA=0;EPP=11.6962;EPPR=105.07;GTI=0;LEN=1;MEANALT=3;MQM=29.5;MQMR=60;NS=3;NUMALT=3;ODDS=6.93889e-18;PAIRED=0;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=112;QR=1873;RO=47;RPL=0;RPP=11.6962;RPPR=105.07;RPR=4;RUN=1;SAF=4;SAP=11.6962;SAR=0;SRF=47;SRP=105.07;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|0:37:30,4,2,1:30:1194:4,2,1:112,79,41:0,-1.13561,-98.2458,-2.49926,-92.9495,-100.309,-5.63141,-96.0655,-97.5261,-103.726 0|0:6:2,0,1,3:2:80:0,1,3:0,41,119:-9.1832,-9.78526,-16.3754,-6.39787,-12.9894,-12.6883,0,-6.58357,-3.19619,-5.68048 0|0:18:15,0,1,2:15:599:0,1,2:0,41,81:-2.16042,-6.67587,-56.0063,-3.29014,-52.6216,-52.3206,0,-49.3265,-45.9418,-48.7245 dDocent_Contig_10726 22 . C T 352.491 . AB=0.333333;ABP=13.8677;AC=3;AF=0.5;AN=6;AO=15;CIGAR=1M4I1M2X;DP=45;DPB=60;DPRA=0;EPP=35.5824;EPPR=68.1545;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=591;QR=1185;RO=30;RPL=0;RPP=35.5824;RPPR=68.1545;RPR=15;RUN=1;SAF=15;SAP=35.5824;SAR=0;SRF=30;SRP=68.1545;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|1:15:11,4:11:443:4:157:-9.99244,0,-35.7105 0|1:13:10,3:10:389:3:119:-7.182,0,-31.4531 0|1:17:9,8:9:353:8:315:-23.5975,0,-27.0128 dDocent_Contig_10727 51 . T C 823.217 . AB=0.326531;ABP=28.6248;AC=3;AF=0.5;AN=6;AO=32;CIGAR=1X;DP=98;DPB=98;DPRA=0;EPP=72.4974;EPPR=146.327;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=6.93889e-18;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=1292;QR=2614;RO=66;RPL=32;RPP=72.4974;RPPR=146.327;RPR=0;RUN=1;SAF=32;SAP=72.4974;SAR=0;SRF=66;SRP=146.327;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:47:30,17:30:1196:17:691:-48.37,0,-93.7685 0/1:7:4,3:4:159:3:120:-9.08048,0,-12.5836 0/1:44:32,12:32:1259:12:481:-30.3941,0,-100.333 dDocent_Contig_10729 112 . T C 156.271 . AB=0;ABP=0;AC=2;AF=0.333333;AN=6;AO=5;CIGAR=1X1M1X;DP=20;DPB=20;DPRA=0.666667;EPP=13.8677;EPPR=35.5824;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=168;QR=513;RO=15;RPL=0;RPP=13.8677;RPPR=35.5824;RPR=5;RUN=1;SAF=0;SAP=13.8677;SAR=5;SRF=0;SRP=35.5824;SRR=15;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|0:8:8,0:8:271:0:0:0,-2.40824,-24.7205 0|0:7:7,0:7:242:0:0:0,-2.10721,-22.1177 1|1:5:0,5:0:0:5:168:-15.4509,-1.50515,0 dDocent_Contig_10730 7 . C T 132.535 . AB=0.113636;ABP=60.0608;AC=2;AF=0.333333;AN=6;AO=5;CIGAR=1X1M;DP=47;DPB=47;DPRA=0;EPP=13.8677;EPPR=74.6689;GTI=0;LEN=1;MEANALT=2;MQM=60;MQMR=60;NS=3;NUMALT=3;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=192;QR=1275;RO=33;RPL=0;RPP=13.8677;RPPR=74.6689;RPR=5;RUN=1;SAF=5;SAP=13.8677;SAR=0;SRF=33;SRP=74.6689;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|1:19:15,3,0,1:15:578:3,0,1:117,0,38:-5.10963,0,-46.5642,-9.62508,-47.4673,-57.0857,-6.51105,-44.3511,-53.9695,-53.6685 0|1:3:2,1,0,0:2:77:1,0,0:33,0,0:-2.39604,0,-6.40605,-2.9981,-6.70708,-9.35701,-2.9981,-6.70708,-9.35701,-9.35701 0|0:25:16,0,5,4:16:620:0,5,4:0,195,154:-11.2157,-16.0321,-66.9683,0,-50.9383,-49.4332,-3.38971,-54.3241,-38.2942,-53.12 dDocent_Contig_10731 11 . T G 2251.14 . AB=0.681818;ABP=34.5954;AC=3;AF=0.5;AN=6;AO=75;CIGAR=1X3M1X;DP=110;DPB=110;DPRA=0;EPP=165.871;EPPR=79.0118;GTI=0;LEN=1;MEANALT=1;MQM=59.4;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=0.906667;PAIREDR=0.942857;PAO=0;PQA=0;PQR=0;PRO=0;QA=2921;QR=1402;RO=35;RPL=0;RPP=165.871;RPPR=79.0118;RPR=75;RUN=1;SAF=75;SAP=165.871;SAR=0;SRF=35;SRP=79.0118;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|1:64:28,36:28:1122:36:1395:-106.541,0,-82.0003 0|1:5:2,3:2:80:3:117:-9.40506,0,-6.08664 0|1:41:5,36:5:200:36:1409:-114.691,0,-6.03731 dDocent_Contig_10732 59 . T C 76.4295 . AB=0.222222;ABP=9.04217;AC=3;AF=0.5;AN=6;AO=4;CIGAR=1X;DP=39;DPB=39;DPRA=0;EPP=11.6962;EPPR=79.0118;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=164;QR=1405;RO=35;RPL=4;RPP=11.6962;RPPR=79.0118;RPR=0;RUN=1;SAF=4;SAP=11.6962;SAR=0;SRF=35;SRP=79.0118;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:29:28,1:28:1123:1:41:0,-4.6353,-97.2531 1/1:1:0,1:0:0:1:41:-4.09457,-0.30103,0 0/1:9:7,2:7:282:2:82:-5.07041,0,-23.0433 dDocent_Contig_10733 109 . G C 200.535 . AB=0.47619;ABP=3.1137;AC=1;AF=0.166667;AN=6;AO=12;CIGAR=1X;DP=60;DPB=60;DPRA=3.78571;EPP=29.068;EPPR=107.241;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=375;QR=1672;RO=48;RPL=0;RPP=29.068;RPPR=107.241;RPR=12;RUN=1;SAF=0;SAP=29.068;SAR=12;SRF=0;SRP=107.241;SRR=48;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:32:30,2:30:1064:2:65:0,-3.45993,-89.898 0/0:7:7,0:7:245:0:0:0,-2.10721,-22.3909 0/1:21:11,10:11:363:10:310:-21.8774,0,-26.666 dDocent_Contig_10734 11 . T G 1622.99 . AB=0.22096;ABP=538.651;AC=3;AF=0.5;AN=6;AO=175;CIGAR=1X3M;DP=792;DPB=788;DPRA=0;EPP=349.069;EPPR=105.945;GTI=0;LEN=1;MEANALT=9.66667;MQM=26.8514;MQMR=46.8108;NS=3;NUMALT=2;ODDS=0;PAIRED=0.102857;PAIREDR=0.043659;PAO=0;PQA=0;PQR=0;PRO=0;QA=4007;QR=17930;RO=481;RPL=0;RPP=383.018;RPPR=1047.49;RPR=175;RUN=1;SAF=171;SAP=349.069;SAR=4;SRF=316;SRP=105.945;SRR=165;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|1:282:172,32,54:172:6321:32,54:1161,1076:-42.3874,0,-444.372,-24.4956,-384.289,-462.162 0|1:260:155,33,59:155:5895:33,59:1195,1228:-47.0818,0,-426.319,-14.9479,-357.416,-433.352 0|1:250:154,12,62:154:5714:12,62:457,1703:-78.3531,-87.2171,-511.238,0,-390.131,-408.949 dDocent_Contig_10736 28 . A G 78.0757 . AB=0.285714;ABP=8.59409;AC=2;AF=0.333333;AN=6;AO=6;CIGAR=1X;DP=54;DPB=54;DPRA=0;EPP=16.0391;EPPR=107.241;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=244;QR=1910;RO=48;RPL=0;RPP=16.0391;RPPR=107.241;RPR=6;RUN=1;SAF=6;SAP=16.0391;SAR=0;SRF=48;SRP=107.241;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:40:38,2:38:1512:2:81:0,-4.35547,-128.644 0/1:6:3,3:3:123:3:122:-9.56631,0,-9.65861 0/1:8:7,1:7:275:1:41:-1.68633,0,-22.708 dDocent_Contig_10737 9 . A G 85.3112 . AB=0.2;ABP=26.4622;AC=2;AF=0.333333;AN=6;AO=6;CIGAR=1X;DP=32;DPB=32;DPRA=7.5;EPP=16.0391;EPPR=51.1168;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=0;PAIREDR=0.923077;PAO=0;PQA=0;PQR=0;PRO=0;QA=226;QR=1006;RO=26;RPL=0;RPP=16.0391;RPPR=59.4686;RPR=6;RUN=1;SAF=6;SAP=16.0391;SAR=0;SRF=25;SRP=51.1168;SRR=1;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:20:16,4:16:619:4:148:-7.65988,0,-50.0294 0/0:2:2,0:2:77:0:0:0,-0.60206,-7.30914 0/1:10:8,2:8:310:2:78:-4.39317,0,-25.2522 dDocent_Contig_10739 47 . G A 78.5888 . AB=0.5;ABP=3.0103;AC=1;AF=0.166667;AN=6;AO=3;CIGAR=1X;DP=19;DPB=19;DPRA=0.923077;EPP=9.52472;EPPR=37.7539;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=0;PAIREDR=0.8125;PAO=0;PQA=0;PQR=0;PRO=0;QA=120;QR=641;RO=16;RPL=0;RPP=9.52472;RPPR=37.7539;RPR=3;RUN=1;SAF=3;SAP=9.52472;SAR=0;SRF=16;SRP=37.7539;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:6:3,3:3:121:3:120:-9.38172,0,-9.47402 0/0:7:7,0:7:285:0:0:0,-2.10721,-26.0244 0/0:6:6,0:6:235:0:0:0,-1.80618,-21.5188 dDocent_Contig_10740 66 . T C 315.845 . AB=0.48;ABP=3.09716;AC=3;AF=0.5;AN=6;AO=12;CIGAR=1X;DP=25;DPB=25;DPRA=0;EPP=29.068;EPPR=31.2394;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=483;QR=512;RO=13;RPL=12;RPP=29.068;RPPR=31.2394;RPR=0;RUN=1;SAF=12;SAP=29.068;SAR=0;SRF=13;SRP=31.2394;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:12:5,7:5:200:7:279:-21.8685,0,-14.7672 0/1:5:2,3:2:80:3:122:-9.86734,0,-6.08664 0/1:8:6,2:6:232:2:82:-5.37144,0,-18.8369 dDocent_Contig_10741 37 . T G 500.455 . AB=0.586207;ABP=4.88226;AC=2;AF=0.333333;AN=6;AO=18;CIGAR=1X;DP=56;DPB=56;DPRA=0;EPP=42.0968;EPPR=85.5263;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=725;QR=1523;RO=38;RPL=0;RPP=42.0968;RPPR=85.5263;RPR=18;RUN=1;SAF=18;SAP=42.0968;SAR=0;SRF=38;SRP=85.5263;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:27:26,1:26:1047:1:41:0,-4.03324,-90.4257 0/1:26:10,16:10:395:16:644:-50.4643,0,-28.0815 0/1:3:2,1:2:81:1:40:-3.09259,0,-6.78264 dDocent_Contig_10742 38 . A G 1188.35 . AB=0.532468;ABP=3.71532;AC=3;AF=0.5;AN=6;AO=41;CIGAR=1X;DP=77;DPB=77;DPRA=0;EPP=92.0407;EPPR=81.1833;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=0.878049;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=1628;QR=1436;RO=36;RPL=0;RPP=92.0407;RPPR=81.1833;RPR=41;RUN=1;SAF=41;SAP=92.0407;SAR=0;SRF=36;SRP=81.1833;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:52:26,26:26:1029:26:1035:-77.7871,0,-77.2516 0/1:12:6,6:6:244:6:231:-17.5395,0,-18.7265 0/1:13:4,9:4:163:9:362:-29.0312,0,-11.145 dDocent_Contig_10743 8 . T C 138.867 . AB=0.142857;ABP=103.829;AC=2;AF=0.333333;AN=6;AO=15;CIGAR=1X;DP=119;DPB=119;DPRA=0;EPP=35.5824;EPPR=228.843;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=0.961538;PAO=0;PQA=0;PQR=0;PRO=0;QA=564;QR=4020;RO=104;RPL=0;RPP=35.5824;RPPR=228.843;RPR=15;RUN=1;SAF=15;SAP=35.5824;SAR=0;SRF=104;SRP=228.843;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:74:64,10:64:2476:10:384:-12.6395,0,-200.762 0/1:17:14,3:14:540:3:106:-4.76975,0,-43.8269 0/0:28:26,2:26:1004:2:74:0,-1.40341,-83.6458 dDocent_Contig_10745 23 . T G 374.735 . AB=0.411765;ABP=5.30951;AC=2;AF=0.333333;AN=6;AO=14;CIGAR=1X;DP=39;DPB=39;DPRA=3.4;EPP=33.4109;EPPR=57.2971;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=561;QR=993;RO=25;RPL=0;RPP=33.4109;RPPR=57.2971;RPR=14;RUN=1;SAF=14;SAP=33.4109;SAR=0;SRF=25;SRP=57.2971;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:20:12,8:12:480:8:325:-23.599,0,-37.5301 0/0:5:5,0:5:195:0:0:0,-1.50515,-17.9204 0/1:14:8,6:8:318:6:236:-17.3973,0,-24.7726 dDocent_Contig_10748 8 . T G 73.6947 . AB=0.117021;ABP=122.765;AC=2;AF=0.333333;AN=6;AO=13;CIGAR=1X;DP=122;DPB=122;DPRA=0;EPP=31.2394;EPPR=231.095;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=57.4037;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=0.688073;PAO=0;PQA=0;PQR=0;PRO=0;QA=500;QR=4189;RO=109;RPL=0;RPP=31.2394;RPPR=239.701;RPR=13;RUN=1;SAF=13;SAP=31.2394;SAR=0;SRF=108;SRP=231.095;SRR=1;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:64:58,6:58:2221:6:233:-2.07416,0,-179.178 0/1:30:25,5:25:964:5:193:-8.71059,0,-73.6399 0/0:28:26,2:26:1004:2:74:0,-1.40341,-81.7928 dDocent_Contig_10750 10 . A G 278.709 . AB=0.428571;ABP=3.63072;AC=1;AF=0.166667;AN=6;AO=6;CIGAR=1X2M1X3M1X;DP=30;DPB=30;DPRA=4.66667;EPP=16.0391;EPPR=42.0968;GTI=0;LEN=1;MEANALT=1;MQM=57.5;MQMR=60;NS=3;NUMALT=2;ODDS=0;PAIRED=0;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=234;QR=706;RO=18;RPL=0;RPP=16.0391;RPPR=42.0968;RPR=6;RUN=1;SAF=6;SAP=16.0391;SAR=0;SRF=18;SRP=42.0968;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|0:13:8,0,5:8:315:0,5:0,197:-14.193,-16.6013,-42.515,0,-26.3073,-24.8022 0|0:3:2,0,0:2:78:0,0:0,0:0,-0.60206,-6.99993,-0.60206,-6.99993,-6.99993 0|1:14:8,6,0:8:313:6,0:234,0:-17.2001,0,-24.318,-19.6083,-26.1242,-45.3425 dDocent_Contig_10751 9 . A T 461.558 . AB=0.111111;ABP=50.3001;AC=0;AF=0;AN=6;AO=4;CIGAR=1X3M1X3M;DP=46;DPB=46;DPRA=0;EPP=11.6962;EPPR=48.6112;GTI=0;LEN=1;MEANALT=2.5;MQM=53.5;MQMR=60;NS=3;NUMALT=3;ODDS=0;PAIRED=0.75;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=159;QR=813;RO=21;RPL=0;RPP=11.6962;RPPR=48.6112;RPR=4;RUN=1;SAF=4;SAP=11.6962;SAR=0;SRF=21;SRP=48.6112;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|0:22:13,3,0,6:13:504:3,0,6:119,0,231:-15.0415,-9.18714,-49.6903,-18.9549,-50.5934,-60.3588,0,-31.6324,-41.3981,-39.5919 0|0:14:7,1,1,5:7:272:1,1,5:40,41,200:-14.2809,-13.1134,-35.1573,-13.0023,-32.0729,-35.0474,0,-19.0636,-18.953,-20.8342 0|0:10:1,0,5,4:1:37:0,5,4:0,201,121:-22.3563,-22.6573,-25.6863,-6.02968,-9.07319,-7.56804,-13.5689,-16.5907,0,-15.3865 dDocent_Contig_10752 153 . G T 53.7782 . AB=0.375;ABP=4.09604;AC=1;AF=0.166667;AN=6;AO=3;CIGAR=1M1I1X;DP=37;DPB=38.5;DPRA=0.551724;EPP=9.52472;EPPR=76.8404;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=103;QR=1184;RO=34;RPL=0;RPP=9.52472;RPPR=76.8404;RPR=3;RUN=1;SAF=0;SAP=9.52472;SAR=3;SRF=0;SRP=76.8404;SRR=34;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|0:19:19,0:19:668:0:0:0,-5.71957,-60.4462 0|0:10:10,0:10:353:0:0:0,-3.0103,-32.1091 0|1:8:5,3:5:163:3:103:-7.20173,0,-12.5826 dDocent_Contig_10753 19 . C T 64.3143 . AB=0.222222;ABP=15.074;AC=2;AF=0.333333;AN=6;AO=4;CIGAR=1X;DP=19;DPB=19;DPRA=9;EPP=11.6962;EPPR=35.5824;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=0;PAIREDR=0.8;PAO=0;PQA=0;PQR=0;PRO=0;QA=162;QR=605;RO=15;RPL=0;RPP=11.6962;RPPR=35.5824;RPR=4;RUN=1;SAF=4;SAP=11.6962;SAR=0;SRF=15;SRP=35.5824;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:11:9,2:9:367:2:81:-4.3744,0,-30.0839 0/0:1:1,0:1:41:0:0:0,-0.30103,-4.09457 0/1:7:5,2:5:197:2:81:-5.57852,0,-15.9977 dDocent_Contig_10754 84 . A G 90.5128 . AB=0.25;ABP=16.0391;AC=2;AF=0.5;AN=4;AO=6;CIGAR=1X;DP=24;DPB=24;DPRA=0;EPP=16.0391;EPPR=42.0968;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=2;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=214;QR=646;RO=18;RPL=6;RPP=16.0391;RPPR=42.0968;RPR=0;RUN=1;SAF=6;SAP=16.0391;SAR=0;SRF=18;SRP=42.0968;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:11:9,2:9:329:2:74:-3.71455,0,-26.6479 ./.:.:.:.:.:.:.:. 0/1:13:9,4:9:317:4:140:-9.03154,0,-24.9565 dDocent_Contig_10757 52 . G C 45.4732 . AB=0.1875;ABP=16.582;AC=1;AF=0.166667;AN=6;AO=3;CIGAR=1X;DP=38;DPB=38;DPRA=1.45455;EPP=9.52472;EPPR=79.0118;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=8.67362e-19;PAIRED=1;PAIREDR=0.942857;PAO=0;PQA=0;PQR=0;PRO=0;QA=120;QR=1350;RO=35;RPL=3;RPP=9.52472;RPPR=79.0118;RPR=0;RUN=1;SAF=3;SAP=9.52472;SAR=0;SRF=35;SRP=79.0118;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:14:14,0:14:558:0:0:0,-4.21442,-50.5623 0/0:8:8,0:8:280:0:0:0,-2.40824,-25.5247 0/1:16:13,3:13:512:3:120:-6.37121,0,-41.6074 dDocent_Contig_10758 45 . G A 92.3779 . AB=0.145455;ABP=63.0614;AC=2;AF=0.333333;AN=6;AO=8;CIGAR=1X;DP=59;DPB=59;DPRA=6.875;EPP=20.3821;EPPR=113.755;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=3.46945e-18;PAIRED=0.5;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=317;QR=2043;RO=51;RPL=0;RPP=20.3821;RPPR=113.755;RPR=8;RUN=1;SAF=8;SAP=20.3821;SAR=0;SRF=51;SRP=113.755;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:39:33,6:33:1326:6:237:-9.96184,0,-107.863 0/0:4:4,0:4:158:0:0:0,-1.20412,-14.5994 0/1:16:14,2:14:559:2:80:-2.7751,0,-45.8348 dDocent_Contig_10759 87 . C G 62.5527 . AB=0.210526;ABP=16.8392;AC=1;AF=0.166667;AN=6;AO=4;CIGAR=1X;DP=43;DPB=43;DPRA=1.58333;EPP=11.6962;EPPR=87.6977;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=146;QR=1405;RO=39;RPL=4;RPP=11.6962;RPPR=87.6977;RPR=0;RUN=1;SAF=4;SAP=11.6962;SAR=0;SRF=39;SRP=87.6977;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:19:15,4:15:547:4:146:-7.77814,0,-43.8483 0/0:8:8,0:8:287:0:0:0,-2.40824,-26.1762 0/0:16:16,0:16:571:0:0:0,-4.81648,-51.7234 dDocent_Contig_10760 21 . C T 54.6642 . AB=0.25;ABP=7.35324;AC=2;AF=0.5;AN=4;AO=2;CIGAR=1X3M1X;DP=20;DPB=20;DPRA=0;EPP=7.35324;EPPR=37.7539;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=2;NUMALT=2;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=80;QR=623;RO=16;RPL=0;RPP=7.35324;RPPR=37.7539;RPR=2;RUN=1;SAF=2;SAP=7.35324;SAR=0;SRF=16;SRP=37.7539;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|1:12:10,2,0:10:380:2,0:80,0:-3.97943,0,-30.9371,-6.98973,-31.5392,-38.1326 .:.:.:.:.:.:.:. 0|1:8:6,0,2:6:243:0,2:0,80:-5.18355,-6.98973,-27.0309,0,-20.442,-19.8399 dDocent_Contig_10762 154 . C A 129.372 . AB=0.242424;ABP=22.0271;AC=3;AF=0.5;AN=6;AO=8;CIGAR=1X;DP=33;DPB=33;DPRA=0;EPP=20.3821;EPPR=57.2971;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=0.875;PAIREDR=0.88;PAO=0;PQA=0;PQR=0;PRO=0;QA=303;QR=1003;RO=25;RPL=0;RPP=20.3821;RPPR=57.2971;RPR=8;RUN=1;SAF=0;SAP=20.3821;SAR=8;SRF=0;SRP=57.2971;SRR=25;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:19:14,5:14:560:5:198:-12.4762,0,-45.023 0/1:4:3,1:3:122:1:38:-2.59315,0,-10.1684 0/1:10:8,2:8:321:2:67:-3.34938,0,-26.2471 dDocent_Contig_10763 34 . T A 327.049 . AB=0.315789;ABP=8.61041;AC=2;AF=0.5;AN=4;AO=6;CIGAR=3M1X;DP=60;DPB=69.75;DPRA=0;EPP=16.0391;EPPR=92.0407;GTI=0;LEN=1;MEANALT=2;MQM=60;MQMR=60;NS=2;NUMALT=2;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=240;QR=1632;RO=41;RPL=0;RPP=16.0391;RPPR=92.0407;RPR=6;RUN=1;SAF=6;SAP=16.0391;SAR=0;SRF=41;SRP=92.0407;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|1:41:32,9,0:32:1269:9,0:348,0:-19.3331,0,-102.143,-28.966,-104.852,-133.429 .:.:.:.:.:.:.:. 0|1:19:9,4,6:9:363:4,6:152,240:-17.0708,-7.32462,-36.045,0,-17.4823,-28.1324 dDocent_Contig_10764 37 . T G 534.496 . AB=0.137931;ABP=69.053;AC=0;AF=0;AN=6;AO=8;CIGAR=1X3M1X3M;DP=74;DPB=74;DPRA=0;EPP=20.3821;EPPR=59.4686;GTI=0;LEN=1;MEANALT=3.5;MQM=60;MQMR=60;NS=3;NUMALT=6;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=318;QR=1009;RO=26;RPL=0;RPP=20.3821;RPPR=59.4686;RPR=8;RUN=1;SAF=8;SAP=20.3821;SAR=0;SRF=26;SRP=59.4686;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|0:48:15,9,6,3,3,12,0:15:583:9,6,3,3,12,0:354,238,122,119,484,0:-35.3821,-10.782,-55.973,-20.3061,-39.0903,-66.4011,-29.8335,-48.6182,-58.1432,-76.8323,-30.1021,-48.8866,-58.4116,-67.9396,-77.1005,0,-18.7841,-28.3092,-37.8373,-38.1058,-44.2894,-39.8975,-58.6823,-68.2073,-77.7354,-78.0036,-47.9018,-87.7993 0|0:10:4,0,2,0,0,4,0:4:149:0,2,0,0,4,0:0,80,0,0,164,0:-12.3388,-13.5429,-25.7246,-6.95605,-19.1327,-18.5307,-13.5429,-25.7246,-19.1327,-25.7246,-13.5429,-25.7246,-19.1327,-25.7246,-25.7246,0,-12.1771,-5.57779,-12.1771,-12.1771,-10.973,-13.5429,-25.7246,-19.1327,-25.7246,-25.7246,-12.1771,-25.7246 0|0:16:7,2,0,0,0,3,4:7:277:2,0,0,0,3,4:80,0,0,0,122,162:-11.2516,-6.76986,-28.9604,-13.3588,-29.5625,-36.1526,-13.3588,-29.5625,-36.1526,-36.1526,-13.3588,-29.5625,-36.1526,-36.1526,-36.1526,-3.29442,-19.4976,-26.0879,-26.0879,-26.0879,-25.1849,0,-16.2025,-22.7928,-22.7928,-22.7928,-12.7271,-21.5887 dDocent_Contig_10765 9 . A G 142.731 . AB=0.3125;ABP=7.89611;AC=3;AF=0.5;AN=6;AO=6;CIGAR=1X;DP=23;DPB=23;DPRA=1.41667;EPP=16.0391;EPPR=39.9253;GTI=0;LEN=1;MEANALT=1;MQM=53.3333;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=0;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=228;QR=655;RO=17;RPL=0;RPP=16.0391;RPPR=39.9253;RPR=6;RUN=1;SAF=6;SAP=16.0391;SAR=0;SRF=17;SRP=39.9253;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:16:11,5:11:421:5:190:-12.0038,0,-33.425 1/1:1:0,1:0:0:1:38:-3.79142,-0.30103,0 0/0:6:6,0:6:234:0:0:0,-1.80618,-21.4311 dDocent_Contig_10766 19 . A G 43.3918 . AB=0.166667;ABP=20.3821;AC=1;AF=0.166667;AN=6;AO=3;CIGAR=1X;DP=26;DPB=26;DPRA=4.5;EPP=9.52472;EPPR=52.9542;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=121;QR=907;RO=23;RPL=0;RPP=9.52472;RPPR=52.9542;RPR=3;RUN=1;SAF=3;SAP=9.52472;SAR=0;SRF=23;SRP=52.9542;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:18:15,3:15:583:3:121:-5.86166,0,-47.3861 0/0:2:2,0:2:81:0:0:0,-0.60206,-7.68573 0/0:6:6,0:6:243:0:0:0,-1.80618,-22.2476 dDocent_Contig_10768 38 . G A 1095.22 . AB=0.47561;ABP=3.434;AC=3;AF=0.5;AN=6;AO=39;CIGAR=1X;DP=82;DPB=82;DPRA=0;EPP=87.6977;EPPR=96.3836;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=1541;QR=1710;RO=43;RPL=0;RPP=87.6977;RPPR=96.3836;RPR=39;RUN=1;SAF=39;SAP=87.6977;SAR=0;SRF=43;SRP=96.3836;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:30:24,6:24:968:6:243:-13.2167,0,-78.3863 0/1:19:6,13:6:220:13:507:-40.2542,0,-14.4257 0/1:33:13,20:13:522:20:791:-61.5737,0,-37.3916 dDocent_Contig_10769 133 . A C 252.201 . AB=0.269231;ABP=15.0369;AC=3;AF=0.5;AN=6;AO=10;CIGAR=1X;DP=34;DPB=34;DPRA=2.9;EPP=24.725;EPPR=55.1256;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=376;QR=907;RO=24;RPL=0;RPP=24.725;RPPR=55.1256;RPR=10;RUN=1;SAF=0;SAP=24.725;SAR=10;SRF=0;SRP=55.1256;SRR=24;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:26:19,7:19:715:7:262:-16.1108,0,-56.8494 1/1:3:0,3:0:0:3:114:-10.632,-0.90309,0 0/0:5:5,0:5:192:0:0:0,-1.50515,-17.6498 dDocent_Contig_10770 32 . T C 81.9314 . AB=0.157895;ABP=41.6397;AC=2;AF=0.333333;AN=6;AO=6;CIGAR=1X;DP=42;DPB=42;DPRA=4.75;EPP=16.0391;EPPR=81.1833;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=245;QR=1440;RO=36;RPL=0;RPP=16.0391;RPPR=81.1833;RPR=6;RUN=1;SAF=6;SAP=16.0391;SAR=0;SRF=36;SRP=81.1833;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:18:14,4:14:551:4:163:-9.63989,0,-44.5136 0/0:4:4,0:4:164:0:0:0,-1.20412,-15.1499 0/1:20:18,2:18:725:2:82:-1.75908,0,-59.5532 dDocent_Contig_10771 79 . T C 179.398 . AB=0.25;ABP=26.8965;AC=3;AF=0.5;AN=6;AO=11;CIGAR=1X1M1X;DP=44;DPB=44;DPRA=0;EPP=26.8965;EPPR=74.6689;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=379;QR=1094;RO=33;RPL=11;RPP=26.8965;RPPR=74.6689;RPR=0;RUN=1;SAF=11;SAP=26.8965;SAR=0;SRF=33;SRP=74.6689;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|1:20:18,2:18:605:2:66:-0.247579,0,-48.7467 0|1:5:4,1:4:139:1:35:-1.99348,0,-11.3475 0|1:19:11,8:11:350:8:278:-19.6384,0,-26.0897 dDocent_Contig_10772 34 . A C 151.577 . AB=0.368421;ABP=5.8675;AC=2;AF=0.333333;AN=6;AO=8;CIGAR=1X;DP=30;DPB=30;DPRA=0;EPP=20.3821;EPPR=50.7827;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=287;QR=861;RO=22;RPL=0;RPP=20.3821;RPPR=50.7827;RPR=8;RUN=1;SAF=8;SAP=20.3821;SAR=0;SRF=22;SRP=50.7827;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:13:10,3:10:403:3:122:-7.4591,0,-32.7165 0/0:11:10,1:10:379:1:24:0,-0.911438,-32.0625 0/1:6:2,4:2:79:4:141:-11.2212,0,-5.69145 dDocent_Contig_10773 7 . C T 770.443 . AB=0.122807;ABP=73.4498;AC=0;AF=0;AN=6;AO=7;CIGAR=1X1M1I3M1X;DP=57;DPB=62.8333;DPRA=0;EPP=18.2106;EPPR=50.7827;GTI=0;LEN=1;MEANALT=2;MQM=60;MQMR=60;NS=3;NUMALT=2;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=276;QR=854;RO=22;RPL=0;RPP=18.2106;RPPR=50.7827;RPR=7;RUN=1;SAF=7;SAP=18.2106;SAR=0;SRF=22;SRP=50.7827;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|0:27:7,4,16:7:274:4,16:158,623:-48.984,-38.088,-59.4149,0,-9.52473,-17.7115 0|0:15:10,1,4:10:383:1,4:40,156:-9.80482,-9.51805,-40.6439,0,-28.1199,-30.2124 0|0:15:5,2,8:5:197:2,8:78,308:-23.7784,-18.871,-34.4802,0,-9.80018,-13.8024 dDocent_Contig_10774 12 . G A 12566.2 . AB=0.769674;ABP=332.111;AC=3;AF=0.5;AN=6;AO=401;CIGAR=1X;DP=521;DPB=521;DPRA=0;EPP=873.771;EPPR=246.215;GTI=0;LEN=1;MEANALT=2;MQM=58.0324;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=0.663342;PAIREDR=0.232143;PAO=0;PQA=0;PQR=0;PRO=0;QA=15944;QR=4366;RO=112;RPL=0;RPP=873.771;RPPR=246.215;RPR=401;RUN=1;SAF=401;SAP=873.771;SAR=0;SRF=112;SRP=246.215;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:265:53,209:53:2065:209:8296:-660.282,0,-106.769 0/1:110:28,78:28:1100:78:3100:-245.585,0,-66.9653 0/1:146:31,114:31:1201:114:4548:-356.27,0,-64.3156 dDocent_Contig_10775 10 . A C 131.676 . AB=0.212121;ABP=26.7649;AC=2;AF=0.333333;AN=6;AO=8;CIGAR=1X;DP=47;DPB=47;DPRA=0;EPP=20.3821;EPPR=87.6977;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=3.46945e-18;PAIRED=0.625;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=325;QR=1560;RO=39;RPL=0;RPP=20.3821;RPPR=87.6977;RPR=8;RUN=1;SAF=8;SAP=20.3821;SAR=0;SRF=39;SRP=87.6977;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:30:24,6:24:955:6:246:-13.4892,0,-77.2199 0/1:3:2,1:2:82:1:41:-3.19148,0,-6.87659 0/0:14:13,1:13:523:1:38:0,-0.417151,-43.62 dDocent_Contig_10776 43 . C A 194.752 . AB=0.5;ABP=3.0103;AC=1;AF=0.25;AN=4;AO=7;CIGAR=1X;DP=23;DPB=23;DPRA=1.55556;EPP=18.2106;EPPR=37.7539;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=2;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=278;QR=627;RO=16;RPL=0;RPP=18.2106;RPPR=37.7539;RPR=7;RUN=1;SAF=7;SAP=18.2106;SAR=0;SRF=16;SRP=37.7539;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:14:7,7:7:282:7:278:-21.1741,0,-21.5383 ./.:.:.:.:.:.:.:. 0/0:9:9,0:9:345:0:0:0,-2.70927,-31.3989 dDocent_Contig_10777 19 . T A 2207.34 . AB=0.325;ABP=34.9309;AC=2;AF=0.333333;AN=6;AO=39;CIGAR=2M1X3M;DP=120;DPB=82;DPRA=0;EPP=87.6977;EPPR=55.1256;GTI=0;LEN=1;MEANALT=2;MQM=60;MQMR=60;NS=3;NUMALT=2;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=1545;QR=924;RO=24;RPL=0;RPP=87.6977;RPPR=55.1256;RPR=39;RUN=1;SAF=39;SAP=87.6977;SAR=0;SRF=24;SRP=55.1256;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|1:57:15,18,24:15:580:18,24:697,933:-81.7596,-29.0211,-71.2402,-9.6167,0,-50.0302 0|1:14:0,7,7:0:0:7,7:274,286:-46.5284,-24.0076,-21.9004,-22.9204,0,-20.8132 0|0:49:9,32,8:9:344:32,8:1227,326:-97.9619,0,-18.5766,-73.7718,-1.30305,-99.5861 dDocent_Contig_10778 35 . C A 344.412 . AB=0.461538;ABP=3.34437;AC=1;AF=0.166667;AN=6;AO=12;CIGAR=1X;DP=63;DPB=63;DPRA=1.40541;EPP=29.068;EPPR=113.755;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=486;QR=2022;RO=51;RPL=0;RPP=29.068;RPPR=113.755;RPR=12;RUN=1;SAF=12;SAP=29.068;SAR=0;SRF=51;SRP=113.755;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:32:32,0:32:1265:0:0:0,-9.63296,-114.113 0/0:5:5,0:5:197:0:0:0,-1.50515,-18.1062 0/1:26:14,12:14:560:12:486:-36.2651,0,-42.9129 dDocent_Contig_10779 9 . A G 56.9221 . AB=0.111111;ABP=50.3001;AC=1;AF=0.166667;AN=6;AO=7;CIGAR=1X1M1X;DP=104;DPB=104;DPRA=0;EPP=18.2106;EPPR=196.271;GTI=0;LEN=1;MEANALT=2;MQM=60;MQMR=60;NS=3;NUMALT=2;ODDS=0;PAIRED=1;PAIREDR=0.988764;PAO=0;PQA=0;PQR=0;PRO=0;QA=269;QR=3444;RO=89;RPL=0;RPP=18.2106;RPPR=196.271;RPR=7;RUN=1;SAF=7;SAP=18.2106;SAR=0;SRF=89;SRP=196.271;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|0:58:52,3,3:52:2020:3,3:109,116:0,-6.76512,-171.838,-6.11396,-163.214,-171.209 0|0:10:8,0,2:8:300:0,2:0,82:-4.76938,-7.17762,-31.7203,0,-24.9452,-24.3431 0|1:36:29,4,3:29:1124:4,3:160,123:-4.4448,0,-91.1157,-3.01819,-82.1655,-94.4442 dDocent_Contig_10780 7 . C T 530.808 . AB=0.362069;ABP=12.5947;AC=2;AF=0.333333;AN=6;AO=21;CIGAR=2X;DP=59;DPB=59;DPRA=29;EPP=48.6112;EPPR=85.5263;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=815;QR=1432;RO=38;RPL=0;RPP=48.6112;RPPR=85.5263;RPR=21;RUN=1;SAF=21;SAP=48.6112;SAR=0;SRF=38;SRP=85.5263;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|1:42:25,17:25:953:17:660:-47.094,0,-73.4402 0|0:1:1,0:1:34:0:0:0,-0.30103,-3.39891 0|1:16:12,4:12:445:4:155:-9.50896,0,-35.5728 dDocent_Contig_10781 98 . N A 183.894 . AB=0;ABP=0;AC=4;AF=1;AN=4;AO=7;CIGAR=1M1D18M1X;DP=7;DPB=6.95238;DPRA=0;EPP=18.2106;EPPR=0;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=0;NS=2;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=0;PAO=1;PQA=35;PQR=35;PRO=1;QA=196;QR=0;RO=0;RPL=7;RPP=18.2106;RPPR=0;RPR=0;RUN=1;SAF=7;SAP=18.2106;SAR=0;SRF=0;SRP=0;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 1|1:2:0,2:0:0:2:46:-4.33975,-0.60206,0 .:.:.:.:.:.:.:. 1|1:5:0,5:0:0:5:150:-13.748,-1.50515,0 dDocent_Contig_10782 8 . T C 7145.38 . AB=0.794613;ABP=226.921;AC=3;AF=0.5;AN=6;AO=236;CIGAR=1X;DP=297;DPB=297;DPRA=0;EPP=515.478;EPPR=120.27;GTI=0;LEN=1;MEANALT=1.66667;MQM=58.4449;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=9049;QR=2068;RO=54;RPL=0;RPP=515.478;RPPR=120.27;RPR=236;RUN=1;SAF=236;SAP=515.478;SAR=0;SRF=54;SRP=120.27;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:147:26,117:26:994:117:4480:-359.784,0,-46.3767 0/1:52:5,47:5:195:47:1807:-146.755,0,-2.27064 0/1:98:23,72:23:879:72:2762:-213.45,0,-50.4473 dDocent_Contig_10785 105 . N C 58.8979 . AB=0;ABP=0;AC=2;AF=1;AN=2;AO=2;CIGAR=3X;DP=2;DPB=2;DPRA=0;EPP=7.35324;EPPR=0;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=0;NS=1;NUMALT=1;ODDS=5.99146;PAIRED=1;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=62;QR=0;RO=0;RPL=0;RPP=7.35324;RPPR=0;RPR=2;RUN=1;SAF=0;SAP=7.35324;SAR=2;SRF=0;SRP=0;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 1|1:2:0,2:0:0:2:62:-5.88871,-0.60206,0 .:.:.:.:.:.:.:. .:.:.:.:.:.:.:. dDocent_Contig_10786 7 . C A 25016.1 . AB=0;ABP=0;AC=6;AF=1;AN=6;AO=759;CIGAR=1X3M;DP=877;DPB=874.75;DPRA=0;EPP=1651.16;EPPR=63.8115;GTI=0;LEN=1;MEANALT=8.33333;MQM=59.8445;MQMR=60;NS=3;NUMALT=2;ODDS=5.55112e-17;PAIRED=0.992095;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=28880;QR=1067;RO=28;RPL=0;RPP=1651.16;RPPR=63.8115;RPR=759;RUN=1;SAF=759;SAP=1651.16;SAR=0;SRF=28;SRP=63.8115;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 1|1:461:11,3,409:11:423:3,409:110,15576:-1362.66,-1356.98,-1390.8,-88.3913,-114.131,0 1|1:153:7,0,130:7:255:0,130:0,4948:-421.975,-424.083,-444.91,-18.31,-39.1339,0 1|1:263:10,15,220:10:389:15,220:573,8356:-716.376,-672.373,-699.827,-34.2552,-19.213,0 dDocent_Contig_10788 8 . T C 2890.5 . AB=0.785124;ABP=88.4515;AC=3;AF=0.5;AN=6;AO=95;CIGAR=1X;DP=121;DPB=121;DPRA=0;EPP=209.3;EPPR=59.4686;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=3668;QR=1002;RO=26;RPL=0;RPP=209.3;RPPR=59.4686;RPR=95;RUN=1;SAF=95;SAP=209.3;SAR=0;SRF=26;SRP=59.4686;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:90:19,71:19:729:71:2740:-219.687,0,-38.849 0/1:7:2,5:2:78:5:191:-15.4513,0,-5.29626 0/1:24:5,19:5:195:19:737:-59.4346,0,-10.6995 dDocent_Contig_10789 113 . C T 184.183 . AB=0.154545;ABP=117.032;AC=2;AF=0.333333;AN=6;AO=20;CIGAR=1X;DP=144;DPB=144;DPRA=0;EPP=46.4397;EPPR=272.273;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=713;QR=4273;RO=124;RPL=0;RPP=46.4397;RPPR=272.273;RPR=20;RUN=1;SAF=0;SAP=46.4397;SAR=20;SRF=0;SRP=272.273;SRR=124;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:55:49,6:49:1681:6:218:-3.4163,0,-135.013 0/0:34:31,3:31:1073:3:109:0,-0.0669324,-86.7075 0/1:55:44,11:44:1519:11:386:-18.5181,0,-120.441 dDocent_Contig_10790 195 . C T 39.6757 . AB=0.176471;ABP=18.4661;AC=1;AF=0.166667;AN=6;AO=3;CIGAR=1X;DP=39;DPB=39;DPRA=1.54545;EPP=9.52472;EPPR=81.1833;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=117;QR=1446;RO=36;RPL=3;RPP=9.52472;RPPR=81.1833;RPR=0;RUN=1;SAF=0;SAP=9.52472;SAR=3;SRF=0;SRP=81.1833;SRR=36;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:20:20,0:20:806:0:0:0,-6.0206,-72.8558 0/0:2:2,0:2:70:0:0:0,-0.60206,-6.64451 0/1:17:14,3:14:570:3:117:-5.79107,0,-46.5247 dDocent_Contig_10792 20 . C T 633.958 . AB=0.187135;ABP=148.397;AC=3;AF=0.5;AN=6;AO=32;CIGAR=1X4M;DP=171;DPB=171;DPRA=0;EPP=72.4974;EPPR=272.273;GTI=0;LEN=1;MEANALT=2.33333;MQM=60;MQMR=60;NS=3;NUMALT=2;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=1284;QR=4744;RO=124;RPL=0;RPP=72.4974;RPPR=272.273;RPR=32;RUN=1;SAF=32;SAP=72.4974;SAR=0;SRF=124;SRP=272.273;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|1:114:88,7,14:88:3375:7,14:253,548:-18.5758,-24.4289,-299.323,0,-256.377,-272.805 0|1:11:7,0,4:7:275:0,4:0,163:-11.7471,-13.8543,-36.4645,0,-23.0119,-21.8078 0|1:46:29,3,14:29:1094:3,14:109,573:-38.5958,-38.4322,-127.155,0,-80.7593,-85.4451 dDocent_Contig_10794 124 . A C 110.027 . AB=0.285714;ABP=11.386;AC=1;AF=0.166667;AN=6;AO=6;CIGAR=1X;DP=115;DPB=115;DPRA=0.446809;EPP=16.0391;EPPR=239.701;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=0.981651;PAO=0;PQA=0;PQR=0;PRO=0;QA=209;QR=3939;RO=109;RPL=0;RPP=16.0391;RPPR=239.701;RPR=6;RUN=1;SAF=0;SAP=16.0391;SAR=6;SRF=0;SRP=239.701;SRR=109;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:79:79,0:79:2865:0:0:0,-23.7814,-258.074 0/0:15:15,0:15:546:0:0:0,-4.51545,-49.4777 0/1:21:15,6:15:528:6:209:-12.8267,0,-41.525 dDocent_Contig_10795 107 . N T 64.5902 . AB=0;ABP=0;AC=2;AF=1;AN=2;AO=2;CIGAR=1X;DP=2;DPB=2;DPRA=0;EPP=7.35324;EPPR=0;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=0;NS=1;NUMALT=1;ODDS=5.99146;PAIRED=1;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=68;QR=0;RO=0;RPL=0;RPP=7.35324;RPPR=0;RPR=2;RUN=1;SAF=0;SAP=7.35324;SAR=2;SRF=0;SRP=0;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL ./.:.:.:.:.:.:.:. 1/1:2:0,2:0:0:2:68:-6.45793,-0.60206,0 ./.:.:.:.:.:.:.:. dDocent_Contig_10796 8 . G A 1208.04 . AB=0.677419;ABP=19.9618;AC=3;AF=0.5;AN=6;AO=42;CIGAR=1X;DP=62;DPB=62;DPRA=0;EPP=94.2121;EPPR=46.4397;GTI=0;LEN=1;MEANALT=1;MQM=58.7143;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=1604;QR=764;RO=20;RPL=0;RPP=94.2121;RPPR=46.4397;RPR=42;RUN=1;SAF=42;SAP=94.2121;SAR=0;SRF=20;SRP=46.4397;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:33:8,25:8:302:25:954:-75.9791,0,-17.6034 0/1:3:2,1:2:74:1:38:-2.89418,0,-6.12234 0/1:26:10,16:10:388:16:612:-47.4357,0,-27.4512 dDocent_Contig_10797 30 . G C 289.2 . AB=0.166667;ABP=14.5915;AC=1;AF=0.166667;AN=6;AO=2;CIGAR=1X3M1X3M1X2M1X2M1X;DP=42;DPB=42;DPRA=0;EPP=7.35324;EPPR=63.8115;GTI=0;LEN=1;MEANALT=1;MQM=50;MQMR=60;NS=3;NUMALT=2;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=79;QR=1101;RO=28;RPL=0;RPP=7.35324;RPPR=63.8115;RPR=2;RUN=1;SAF=2;SAP=7.35324;SAR=0;SRF=28;SRP=63.8115;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|0:4:3,0,1:3:118:0,1:0,41:-2.89045,-3.79354,-13.488,0,-10.0998,-9.79877 0|1:12:10,2,0:10:395:2,0:79,0:-3.82179,0,-32.2969,-6.83209,-32.8989,-39.3392 0|0:26:15,0,10:15:588:0,10:0,392:-27.7103,-32.2258,-80.5774,0,-48.3445,-45.3342 dDocent_Contig_10798 107 . N A 557.82 . AB=0;ABP=0;AC=6;AF=1;AN=6;AO=17;CIGAR=1X;DP=17;DPB=17;DPRA=0;EPP=39.9253;EPPR=0;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=0;NS=3;NUMALT=1;ODDS=1.69407e-21;PAIRED=1;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=603;QR=0;RO=0;RPL=0;RPP=39.9253;RPPR=0;RPR=17;RUN=1;SAF=0;SAP=39.9253;SAR=17;SRF=0;SRP=0;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 1/1:10:0,10:0:0:10:357:-32.4722,-3.0103,0 1/1:1:0,1:0:0:1:35:-3.49863,-0.30103,0 1/1:6:0,6:0:0:6:211:-19.3333,-1.80618,0 dDocent_Contig_10801 142 . A G 128.441 . AB=0;ABP=0;AC=2;AF=0.333333;AN=6;AO=4;CIGAR=1X;DP=31;DPB=31;DPRA=0.296296;EPP=11.6962;EPPR=61.6401;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=1.69407e-21;PAIRED=0;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=137;QR=1049;RO=27;RPL=0;RPP=11.6962;RPPR=61.6401;RPR=4;RUN=1;SAF=0;SAP=11.6962;SAR=4;SRF=0;SRP=61.6401;SRR=27;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:13:13,0:13:507:0:0:0,-3.91339,-45.9761 1/1:4:0,4:0:0:4:137:-12.6679,-1.20412,0 0/0:14:14,0:14:542:0:0:0,-4.21442,-49.1216 dDocent_Contig_10803 36 . T A 2348.95 . AB=0.0533333;ABP=132.98;AC=1;AF=0.166667;AN=6;AO=4;CIGAR=1M9D1M1X2M1X;DP=106;DPB=55;DPRA=0;EPP=11.6962;EPPR=48.6112;GTI=0;LEN=1;MEANALT=2;MQM=60;MQMR=60;NS=3;NUMALT=2;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=156;QR=802;RO=21;RPL=0;RPP=11.6962;RPPR=48.6112;RPR=4;RUN=1;SAF=4;SAP=11.6962;SAR=0;SRF=21;SRP=48.6112;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|0:62:11,1,50:11:417:1,50:39,1781:-141.782,-141.887,-175.782,0,-30.9746,-19.1299 1|0:13:0,3,10:0:0:3,10:117,352:-38.6249,-28.9987,-28.0956,-10.0071,0,-6.99682 0|0:31:10,0,21:10:385:0,21:0,767:-60.0102,-63.0205,-94.6377,0,-31.9955,-25.6739 dDocent_Contig_10804 7 . C T 72.8029 . AB=0.5;ABP=3.0103;AC=1;AF=0.166667;AN=6;AO=4;CIGAR=1X;DP=63;DPB=63;DPRA=0.869565;EPP=11.6962;EPPR=131.127;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=0;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=156;QR=2276;RO=59;RPL=0;RPP=11.6962;RPPR=131.127;RPR=4;RUN=1;SAF=4;SAP=11.6962;SAR=0;SRF=59;SRP=131.127;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:34:33,1:33:1270:1:39:0,-6.33846,-110.694 0/1:6:3,3:3:115:3:117:-9.1042,0,-8.91871 0/0:23:23,0:23:891:0:0:0,-6.92369,-80.5091 dDocent_Contig_10805 17 . C G 313.88 . AB=0.52381;ABP=3.1137;AC=1;AF=0.166667;AN=6;AO=11;CIGAR=1X;DP=41;DPB=41;DPRA=2.1;EPP=26.8965;EPPR=68.1545;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=432;QR=1179;RO=30;RPL=0;RPP=26.8965;RPPR=68.1545;RPR=11;RUN=1;SAF=11;SAP=26.8965;SAR=0;SRF=30;SRP=68.1545;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:21:10,11:10:400:11:432:-32.9109,0,-30.0379 0/0:9:9,0:9:350:0:0:0,-2.70927,-31.8578 0/0:11:11,0:11:429:0:0:0,-3.31133,-38.9571 dDocent_Contig_10806 13 . C T 272.024 . AB=0.25;ABP=11.6962;AC=1;AF=0.166667;AN=6;AO=4;CIGAR=1X3M2X1M2X;DP=49;DPB=49;DPRA=0;EPP=3.0103;EPPR=31.2394;GTI=0;LEN=1;MEANALT=3;MQM=34;MQMR=60;NS=3;NUMALT=8;ODDS=0;PAIRED=0;PAIREDR=0.923077;PAO=0;PQA=0;PQR=0;PRO=0;QA=141;QR=487;RO=13;RPL=0;RPP=11.6962;RPPR=31.2394;RPR=4;RUN=1;SAF=2;SAP=3.0103;SAR=2;SRF=13;SRP=31.2394;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|0:15:5,0,0,0,0,0,2,0,7:5:189:0,0,0,0,0,2,0,7:0,0,0,0,0,77,0,193:-12.8456,-14.3508,-29.8716,-14.3508,-29.8716,-29.8716,-14.3508,-29.8716,-29.8716,-29.8716,-14.3508,-29.8716,-29.8716,-29.8716,-29.8716,-14.3508,-29.8716,-29.8716,-29.8716,-29.8716,-29.8716,-8.00609,-23.5402,-23.5402,-23.5402,-23.5402,-23.5402,-22.9382,-14.3508,-29.8716,-29.8716,-29.8716,-29.8716,-29.8716,-23.5402,-29.8716,0,-15.5027,-15.5027,-15.5027,-15.5027,-15.5027,-9.17679,-15.5027,-13.3955 0|1:16:6,4,0,0,0,0,0,0,5:6:221:4,0,0,0,0,0,0,5:141,0,0,0,0,0,0,113:-8.31283,0,-16.9334,-10.119,-18.1375,-28.2285,-10.119,-18.1375,-28.2285,-28.2285,-10.119,-18.1375,-28.2285,-28.2285,-28.2285,-10.119,-18.1375,-28.2285,-28.2285,-28.2285,-28.2285,-10.119,-18.1375,-28.2285,-28.2285,-28.2285,-28.2285,-28.2285,-10.119,-18.1375,-28.2285,-28.2285,-28.2285,-28.2285,-28.2285,-28.2285,-2.59569,-10.6205,-20.6867,-20.6867,-20.6867,-20.6867,-20.6867,-20.6867,-19.1816 0|0:18:2,0,2,2,4,2,0,2,2:2:77:0,2,2,4,2,0,2,2:0,74,65,146,74,0,82,51:-11.4697,-12.0717,-18.398,-6.01491,-12.3421,-11.74,-7.14545,-13.4715,-7.41607,-12.8695,-0.450194,-6.77807,-0.721163,-1.85319,-5.57395,-6.01546,-12.3426,-6.28607,-7.41662,-0.721711,-11.7406,-12.0717,-18.398,-12.3421,-13.4715,-6.77807,-12.3426,-18.398,-5.29469,-11.6226,-5.56531,-6.69585,0,-5.56585,-11.6226,-11.0205,-8.36534,-14.6902,-8.63595,-9.7665,-3.07468,-8.6365,-14.6902,-7.91574,-14.0881 dDocent_Contig_10807 7 . C A 57.0889 . AB=0.147059;ABP=39.7976;AC=1;AF=0.166667;AN=6;AO=5;CIGAR=1X;DP=53;DPB=53;DPRA=3.57895;EPP=13.8677;EPPR=107.241;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=59.6875;NS=3;NUMALT=1;ODDS=0;PAIRED=0;PAIREDR=0.291667;PAO=0;PQA=0;PQR=0;PRO=0;QA=190;QR=1812;RO=48;RPL=0;RPP=13.8677;RPPR=107.241;RPR=5;RUN=1;SAF=5;SAP=13.8677;SAR=0;SRF=48;SRP=107.241;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:34:29,5:29:1089:5:190:-7.23172,0,-88.0778 0/0:5:5,0:5:192:0:0:0,-1.50515,-17.6457 0/0:14:14,0:14:531:0:0:0,-4.21442,-48.1181 dDocent_Contig_10809 38 . G A 45.2338 . AB=0.176471;ABP=18.4661;AC=1;AF=0.166667;AN=6;AO=3;CIGAR=1X;DP=82;DPB=82;DPRA=0.523077;EPP=9.52472;EPPR=174.557;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=0.987342;PAO=0;PQA=0;PQR=0;PRO=0;QA=123;QR=3131;RO=79;RPL=0;RPP=9.52472;RPPR=174.557;RPR=3;RUN=1;SAF=3;SAP=9.52472;SAR=0;SRF=79;SRP=174.557;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:49:49,0:49:1945:0:0:0,-14.7505,-175.249 0/0:16:16,0:16:630:0:0:0,-4.81648,-57.0339 0/1:17:14,3:14:556:3:123:-6.34728,0,-45.2613 dDocent_Contig_10810 77 . C T 61.4477 . AB=0.272727;ABP=7.94546;AC=1;AF=0.166667;AN=6;AO=3;CIGAR=1X;DP=25;DPB=25;DPRA=1.57143;EPP=9.52472;EPPR=50.7827;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=53.0455;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=0.863636;PAO=0;PQA=0;PQR=0;PRO=0;QA=121;QR=860;RO=22;RPL=3;RPP=9.52472;RPPR=50.7827;RPR=0;RUN=1;SAF=3;SAP=9.52472;SAR=0;SRF=22;SRP=50.7827;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:7:7,0:7:281:0:0:0,-2.10721,-25.6611 0/1:11:8,3:8:325:3:121:-7.96866,0,-26.3081 0/0:7:7,0:7:254:0:0:0,-2.10721,-16.1698 dDocent_Contig_10811 22 . T A 37.6594 . AB=0.113636;ABP=60.0608;AC=1;AF=0.166667;AN=6;AO=7;CIGAR=1X;DP=130;DPB=130;DPRA=0.660714;EPP=18.2106;EPPR=270.101;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=287;QR=4910;RO=123;RPL=0;RPP=18.2106;RPPR=270.101;RPR=7;RUN=1;SAF=7;SAP=18.2106;SAR=0;SRF=123;SRP=270.101;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:56:56,0:56:2231:0:0:0,-16.8577,-200.964 0/0:30:28,2:28:1124:2:82:0,-1.25122,-93.6647 0/1:44:39,5:39:1555:5:205:-5.58969,0,-126.95 dDocent_Contig_10812 10 . C A 494.293 . AB=0.475;ABP=3.22745;AC=3;AF=0.5;AN=6;AO=19;CIGAR=1X;DP=40;DPB=40;DPRA=0;EPP=44.2683;EPPR=48.6112;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=3.46945e-18;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=732;QR=815;RO=21;RPL=0;RPP=44.2683;RPPR=48.6112;RPR=19;RUN=1;SAF=19;SAP=44.2683;SAR=0;SRF=21;SRP=48.6112;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:16:11,5:11:427:5:199:-13.4722,0,-33.9648 0/1:3:2,1:2:75:1:37:-2.79474,0,-6.21725 0/1:21:8,13:8:313:13:496:-38.6626,0,-22.2125 dDocent_Contig_10813 8 . G A 343.315 . AB=0.631579;ABP=5.8675;AC=1;AF=0.25;AN=4;AO=12;CIGAR=1X;DP=33;DPB=33;DPRA=1.35714;EPP=29.068;EPPR=48.6112;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=2;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=460;QR=802;RO=21;RPL=0;RPP=29.068;RPPR=48.6112;RPR=12;RUN=1;SAF=12;SAP=29.068;SAR=0;SRF=21;SRP=48.6112;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:19:7,12:7:263:12:460:-36.0305,0,-18.3075 ./.:.:.:.:.:.:.:. 0/0:14:14,0:14:539:0:0:0,-4.21442,-48.8539 dDocent_Contig_10815 177 . G C 34.7141 . AB=0.272727;ABP=7.94546;AC=2;AF=0.333333;AN=6;AO=3;CIGAR=1X;DP=23;DPB=23;DPRA=0.458333;EPP=9.52472;EPPR=46.4397;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=104;QR=789;RO=20;RPL=3;RPP=9.52472;RPPR=46.4397;RPR=0;RUN=1;SAF=0;SAP=9.52472;SAR=3;SRF=0;SRP=46.4397;SRR=20;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:9:7,2:7:280:2:80:-4.88252,0,-22.8623 0/0:12:12,0:12:479:0:0:0,-3.61236,-43.4611 0/1:2:1,1:1:30:1:24:-1.79783,0,-2.39751 dDocent_Contig_10816 7 . C A 254.162 . AB=0.323529;ABP=12.2071;AC=2;AF=0.333333;AN=6;AO=11;CIGAR=1X;DP=41;DPB=41;DPRA=2.42857;EPP=26.8965;EPPR=68.1545;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=3.46945e-18;PAIRED=1;PAIREDR=0.933333;PAO=0;PQA=0;PQR=0;PRO=0;QA=427;QR=1090;RO=30;RPL=0;RPP=26.8965;RPPR=68.1545;RPR=11;RUN=1;SAF=11;SAP=26.8965;SAR=0;SRF=30;SRP=68.1545;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:15:12,3:12:464:3:117:-6.39493,0,-37.5956 0/0:7:7,0:7:232:0:0:0,-2.10721,-21.1985 0/1:19:11,8:11:394:8:310:-22.5441,0,-30.0716 dDocent_Contig_10817 7 . C T 32.2123 . AB=0.108108;ABP=52.3673;AC=2;AF=0.333334;AN=6;AO=4;CIGAR=1X4M;DP=73;DPB=73;DPRA=0.513889;EPP=11.6962;EPPR=139.813;GTI=0;LEN=1;MEANALT=2;MQM=60;MQMR=60;NS=3;NUMALT=2;ODDS=0;PAIRED=0.75;PAIREDR=0.904762;PAO=0;PQA=0;PQR=0;PRO=0;QA=154;QR=2399;RO=63;RPL=0;RPP=11.6962;RPPR=139.813;RPR=4;RUN=1;SAF=4;SAP=11.6962;SAR=0;SRF=63;SRP=139.813;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|0:36:33,0,0:33:1246:0,0:0,0:0,-9.93399,-112.043,-9.93399,-112.043,-112.043 0|1:12:9,2,1:9:346:2,1:77,39:-3.60981,0,-27.7988,-3.11155,-25.1944,-31.2159 0|1:25:21,0,3:21:807:0,3:0,115:-3.11962,-9.44125,-75.693,0,-66.2543,-65.3512 dDocent_Contig_10819 95 . A T 126.537 . AB=0.833333;ABP=8.80089;AC=1;AF=0.166667;AN=6;AO=5;CIGAR=1X;DP=27;DPB=27;DPRA=0.571429;EPP=13.8677;EPPR=50.7827;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=173;QR=762;RO=22;RPL=5;RPP=13.8677;RPPR=50.7827;RPR=0;RUN=1;SAF=5;SAP=13.8677;SAR=0;SRF=22;SRP=50.7827;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:16:16,0:16:553:0:0:0,-4.81648,-50.0972 0/0:5:5,0:5:174:0:0:0,-1.50515,-16.002 0/1:6:1,5:1:35:5:173:-14.104,0,-1.69245 dDocent_Contig_10820 21 . G A 1130.36 . AB=0.455882;ABP=4.1599;AC=4;AF=0.666667;AN=6;AO=38;CIGAR=1X1M;DP=75;DPB=75;DPRA=0;EPP=85.5263;EPPR=74.6689;GTI=0;LEN=1;MEANALT=2;MQM=60;MQMR=60;NS=3;NUMALT=2;ODDS=0;PAIRED=0.973684;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=1506;QR=1290;RO=33;RPL=0;RPP=85.5263;RPPR=74.6689;RPR=38;RUN=1;SAF=38;SAP=85.5263;SAR=0;SRF=33;SRP=74.6689;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|1:34:15,1,17:15:575:1,17:41,675:-51.0345,-52.1653,-99.0381,0,-43.7714,-42.0395 1|1:7:0,0,7:0:0:0,7:0,285:-26.0244,-26.0244,-26.0244,-2.10721,-2.10721,0 0|1:34:18,2,14:18:715:2,14:69,546:-39.5001,-39.3205,-97.5861,0,-53.3119,-54.696 dDocent_Contig_10821 13 . T C 97.4853 . AB=0.227273;ABP=17.2236;AC=1;AF=0.166667;AN=6;AO=7;CIGAR=2X;DP=209;DPB=209;DPRA=0;EPP=18.2106;EPPR=439.476;GTI=0;LEN=1;MEANALT=1.33333;MQM=59.1429;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=0.985075;PAO=0;PQA=0;PQR=0;PRO=0;QA=277;QR=7994;RO=201;RPL=0;RPP=18.2106;RPPR=439.476;RPR=7;RUN=1;SAF=7;SAP=18.2106;SAR=0;SRF=201;SRP=439.476;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|0:121:119,1:119:4721:1:40:0,-32.5315,-420.824 0|1:22:17,5:17:680:5:198:-11.5724,0,-54.9081 0|0:66:65,1:65:2593:1:39:0,-15.9714,-229.612 dDocent_Contig_10822 59 . A G 49.6796 . AB=0.666667;ABP=3.73412;AC=1;AF=0.166667;AN=6;AO=2;CIGAR=1X;DP=45;DPB=45;DPRA=0.142857;EPP=7.35324;EPPR=96.3836;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=0.953488;PAO=0;PQA=0;PQR=0;PRO=0;QA=81;QR=1695;RO=43;RPL=2;RPP=7.35324;RPPR=96.3836;RPR=0;RUN=1;SAF=2;SAP=7.35324;SAR=0;SRF=43;SRP=96.3836;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:31:31,0:31:1212:0:0:0,-9.33193,-109.349 0/1:3:1,2:1:41:2:81:-6.78264,0,-3.19148 0/0:11:11,0:11:442:0:0:0,-3.31133,-40.1349 dDocent_Contig_10824 71 . G A 72.7521 . AB=0.285714;ABP=8.59409;AC=1;AF=0.166667;AN=6;AO=4;CIGAR=1X;DP=37;DPB=37;DPRA=1.21739;EPP=11.6962;EPPR=74.6689;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=0.909091;PAO=0;PQA=0;PQR=0;PRO=0;QA=144;QR=1168;RO=33;RPL=2;RPP=3.0103;RPPR=3.60252;RPR=2;RUN=1;SAF=2;SAP=3.0103;SAR=2;SRF=15;SRP=3.60252;SRR=18;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:19:19,0:19:674:0:0:0,-5.71957,-60.9878 0/0:4:4,0:4:141:0:0:0,-1.20412,-13.0371 0/1:14:10,4:10:353:4:144:-9.09903,0,-27.895 dDocent_Contig_10825 7 . C A 46.9107 . AB=0.666667;ABP=3.73412;AC=1;AF=0.166667;AN=6;AO=5;CIGAR=1X;DP=59;DPB=59;DPRA=1.23529;EPP=13.8677;EPPR=120.27;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=193;QR=2072;RO=54;RPL=0;RPP=13.8677;RPPR=120.27;RPR=5;RUN=1;SAF=5;SAP=13.8677;SAR=0;SRF=54;SRP=120.27;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:39:36,3:36:1381:3:115:0,-1.01528,-113.848 0/0:17:17,0:17:652:0:0:0,-5.11751,-59.0141 0/1:3:1,2:1:39:2:78:-6.50038,0,-2.99347 dDocent_Contig_10826 7 . C T 80.1105 . AB=0.285714;ABP=8.59409;AC=1;AF=0.166667;AN=6;AO=4;CIGAR=1X;DP=69;DPB=69;DPRA=0.509091;EPP=11.6962;EPPR=144.156;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=152;QR=2515;RO=65;RPL=0;RPP=11.6962;RPPR=144.156;RPR=4;RUN=1;SAF=4;SAP=11.6962;SAR=0;SRF=65;SRP=144.156;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:52:52,0:52:2015:0:0:0,-15.6536,-181.584 0/0:3:3,0:3:114:0:0:0,-0.90309,-10.6322 0/1:14:10,4:10:386:4:152:-9.83478,0,-30.8822 dDocent_Contig_10827 7 . C T 36.1617 . AB=0.0952381;ABP=32.8939;AC=0;AF=0;AN=6;AO=2;CIGAR=1X1M1X;DP=50;DPB=50;DPRA=1.90909;EPP=7.35324;EPPR=70.0157;GTI=0;LEN=1;MEANALT=2;MQM=36;MQMR=58.2143;NS=3;NUMALT=2;ODDS=0;PAIRED=0;PAIREDR=0.928571;PAO=0;PQA=0;PQR=0;PRO=0;QA=75;QR=1575;RO=42;RPL=0;RPP=7.35324;RPPR=94.2121;RPR=2;RUN=1;SAF=2;SAP=7.35324;SAR=0;SRF=39;SRP=70.0157;SRR=3;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|0:18:15,0,3:15:572:0,3:0,99:-3.67128,-8.18673,-55.1595,0,-47.3068,-46.4037 0|0:21:16,2,3:16:590:2,3:75,102:-3.45941,-2.81886,-49.6769,0,-42.0086,-46.5609 0|0:11:11,0,0:11:413:0,0:0,0:0,-3.31133,-37.5192,-3.31133,-37.5192,-37.5192 dDocent_Contig_10829 124 . G A 332.831 . AB=0.428571;ABP=5.18177;AC=2;AF=0.333333;AN=6;AO=21;CIGAR=1X;DP=53;DPB=53;DPRA=6.125;EPP=48.6112;EPPR=72.4974;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=567;QR=904;RO=32;RPL=0;RPP=48.6112;RPPR=72.4974;RPR=21;RUN=1;SAF=0;SAP=48.6112;SAR=21;SRF=0;SRP=72.4974;SRR=32;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:31:21,10:21:588:10:231:-11.6854,0,-43.8584 0/0:4:4,0:4:104:0:0:0,-1.20412,-9.6186 0/1:18:7,11:7:212:11:336:-25.1205,0,-13.9596 dDocent_Contig_10831 21 . G A 152.48 . AB=0.291667;ABP=12.0581;AC=1;AF=0.166667;AN=6;AO=7;CIGAR=1X;DP=45;DPB=45;DPRA=2.28571;EPP=18.2106;EPPR=85.5263;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=266;QR=1486;RO=38;RPL=0;RPP=18.2106;RPPR=85.5263;RPR=7;RUN=1;SAF=7;SAP=18.2106;SAR=0;SRF=38;SRP=85.5263;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:20:20,0:20:770:0:0:0,-6.0206,-69.6193 0/0:1:1,0:1:41:0:0:0,-0.30103,-4.09457 0/1:24:17,7:17:675:7:266:-17.0712,0,-53.8541 dDocent_Contig_10832 124 . C G 30.2108 . AB=0.147059;ABP=39.7976;AC=2;AF=0.333333;AN=6;AO=5;CIGAR=1X;DP=119;DPB=119;DPRA=0.2;EPP=13.8677;EPPR=250.558;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=174;QR=3719;RO=114;RPL=0;RPP=13.8677;RPPR=250.558;RPR=5;RUN=1;SAF=0;SAP=13.8677;SAR=5;SRF=0;SRP=250.558;SRR=114;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:85:85,0:85:2765:0:0:0,-25.5875,-249.099 0/1:7:6,1:6:199:1:34:-1.2917,0,-16.1292 0/1:27:23,4:23:755:4:140:-4.81712,0,-60.1285 dDocent_Contig_10833 25 . G A 63.771 . AB=0.3;ABP=6.48466;AC=1;AF=0.166667;AN=6;AO=3;CIGAR=1X;DP=21;DPB=21;DPRA=1.81818;EPP=9.52472;EPPR=42.0968;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=117;QR=702;RO=18;RPL=0;RPP=9.52472;RPPR=42.0968;RPR=3;RUN=1;SAF=3;SAP=9.52472;SAR=0;SRF=18;SRP=42.0968;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:10:7,3:7:270:3:117:-7.89991,0,-21.6485 0/0:6:6,0:6:230:0:0:0,-1.80618,-21.0662 0/0:5:5,0:5:202:0:0:0,-1.50515,-18.5621 dDocent_Contig_10834 11 . C T 97.7443 . AB=0.25;ABP=16.0391;AC=2;AF=0.333333;AN=6;AO=6;CIGAR=1X;DP=28;DPB=28;DPRA=3;EPP=16.0391;EPPR=50.7827;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=220;QR=804;RO=22;RPL=0;RPP=16.0391;RPPR=50.7827;RPR=6;RUN=1;SAF=6;SAP=16.0391;SAR=0;SRF=22;SRP=50.7827;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:14:11,3:11:405:3:111:-6.1395,0,-32.5828 0/0:4:4,0:4:144:0:0:0,-1.20412,-13.3134 0/1:10:7,3:7:255:3:109:-7.1577,0,-20.2916 dDocent_Contig_10835 35 . A G 2447.15 . AB=0.645161;ABP=25.7057;AC=3;AF=0.5;AN=6;AO=80;CIGAR=1X;DP=124;DPB=124;DPRA=0;EPP=176.728;EPPR=90.0666;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=0.568182;PAO=0;PQA=0;PQR=0;PRO=0;QA=3186;QR=1733;RO=44;RPL=0;RPP=176.728;RPPR=81.9729;RPR=80;RUN=1;SAF=80;SAP=176.728;SAR=0;SRF=43;SRP=90.0666;SRR=1;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:86:23,63:23:902:63:2529:-201.853,0,-55.5963 0/1:10:5,5:5:203:5:188:-14.2666,0,-15.6425 0/1:28:16,12:16:628:12:469:-34.1187,0,-48.4245 dDocent_Contig_10837 7 . C A 2543.97 . AB=0.213415;ABP=120.005;AC=2;AF=0.333333;AN=6;AO=35;CIGAR=1X2M;DP=164;DPB=164;DPRA=0;EPP=79.0118;EPPR=57.2971;GTI=0;LEN=1;MEANALT=3.66667;MQM=57.5429;MQMR=60;NS=3;NUMALT=4;ODDS=2.77556e-17;PAIRED=0.628571;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=1314;QR=962;RO=25;RPL=0;RPP=79.0118;RPPR=57.2971;RPR=35;RUN=1;SAF=35;SAP=79.0118;SAR=0;SRF=25;SRP=57.2971;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 1|0:86:9,12,0,21,41:9:344:12,0,21,41:457,0,789,1574:-161.349,-126.571,-151.186,-164.058,-154.798,-192.285,-100.979,-91.7197,-129.206,-122.885,-34.8479,-25.5874,-63.0767,0,-50.7345 1|0:30:6,0,6,8,10:6:234:0,6,8,10:0,221,305,378:-34.9601,-36.7663,-56.0048,-19.3378,-38.5756,-36.7695,-11.7468,-30.9875,-13.5603,-28.5792,-5.77791,-25.019,-7.59321,0,-22.0087 0|0:48:10,7,4,6,21:10:384:7,4,6,21:258,150,220,811:-63.6107,-45.5251,-74.9417,-55.0322,-65.4603,-85.3516,-48.9097,-59.3379,-68.8446,-78.627,0,-10.4332,-19.9414,-13.8186,-25.2083 dDocent_Contig_10838 7 . C T 2168.75 . AB=0.313924;ABP=121.804;AC=3;AF=0.5;AN=6;AO=124;CIGAR=1X;DP=395;DPB=395;DPRA=0;EPP=272.273;EPPR=569.765;GTI=0;LEN=1;MEANALT=2.33333;MQM=42.3548;MQMR=44.6245;NS=3;NUMALT=1;ODDS=2.77556e-17;PAIRED=0.209677;PAIREDR=0.264368;PAO=0;PQA=0;PQR=0;PRO=0;QA=4670;QR=9616;RO=261;RPL=0;RPP=272.273;RPPR=569.765;RPR=124;RUN=1;SAF=124;SAP=272.273;SAR=0;SRF=261;SRP=569.765;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:97:64,31:64:2428:31:1190:-65.6611,0,-163.774 0/1:204:123,75:123:4487:75:2800:-128.38,0,-249.337 0/1:94:74,18:74:2701:18:680:-28.3566,0,-189.903 dDocent_Contig_10839 9 . G A 417.527 . AB=0.097561;ABP=60.6867;AC=1;AF=0.166667;AN=6;AO=4;CIGAR=1M1X15M;DP=68;DPB=68;DPRA=20.5;EPP=11.6962;EPPR=63.8115;GTI=0;LEN=1;MEANALT=6;MQM=60;MQMR=60;NS=3;NUMALT=5;ODDS=1.38778e-17;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=132;QR=1102;RO=28;RPL=0;RPP=11.6962;RPPR=63.8115;RPR=4;RUN=1;SAF=4;SAP=11.6962;SAR=0;SRF=28;SRP=63.8115;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|1:41:20,6,7,0,2,4:20:790:6,7,0,2,4:245,255,0,79,132:-14.8013,-0.592498,-63.8154,0,-44.7991,-62.9117,-20.8219,-65.6216,-65.0189,-85.8413,-14.3187,-59.1197,-58.5175,-79.3397,-78.7377,-10.1655,-54.9614,-54.36,-75.1805,-68.6792,-73.9764 0|0:2:0,0,0,0,1,0:0:0:0,0,0,1,0:0,0,0,39,0:-3.52182,-3.52182,-3.52182,-3.52182,-3.52182,-3.52182,-3.52182,-3.52182,-3.52182,-3.52182,-0.30103,-0.30103,-0.30103,-0.30103,0,-3.52182,-3.52182,-3.52182,-3.52182,-0.30103,-3.52182 0|0:25:8,3,1,4,9,0:8:312:3,1,4,9,0:90,36,156,356,0:-26.9134,-22.145,-46.887,-26.3852,-44.8542,-51.7344,-16.4936,-34.9668,-39.2101,-40.9425,0,-18.488,-22.7277,-12.8346,-22.9551,-29.3216,-47.7901,-52.0354,-42.1466,-25.6644,-54.972 dDocent_Contig_10840 122 . T C 978.901 . AB=0.696429;ABP=21.778;AC=2;AF=0.5;AN=4;AO=39;CIGAR=1X1M1X;DP=56;DPB=56;DPRA=0;EPP=87.6977;EPPR=39.9253;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=2;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=1309;QR=580;RO=17;RPL=0;RPP=87.6977;RPPR=39.9253;RPR=39;RUN=1;SAF=0;SAP=87.6977;SAR=39;SRF=0;SRP=39.9253;SRR=17;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|1:42:8,34:8:276:34:1138:-90.0768,0,-12.5327 .:.:.:.:.:.:.:. 0|1:14:9,5:9:304:5:171:-11.5123,0,-23.4739 dDocent_Contig_10841 76 . A G 2323.91 . AB=0.316062;ABP=59.7274;AC=1;AF=0.166667;AN=6;AO=61;CIGAR=1M5D27M1X;DP=193;DPB=168.206;DPRA=0;EPP=135.47;EPPR=92.0407;GTI=0;LEN=1;MEANALT=5;MQM=60;MQMR=60;NS=3;NUMALT=4;ODDS=5.55112e-17;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=2111;QR=1578;RO=41;RPL=61;RPP=135.47;RPPR=92.0407;RPR=0;RUN=1;SAF=61;SAP=135.47;SAR=0;SRF=41;SRP=92.0407;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 1|0:146:21,9,54,15,41:21:808:9,54,15,41:347,1868,499,1480:-199.872,-177.696,-241.327,-54.4318,-92.2769,-104.519,-165.824,-203.668,-80.408,-227.649,-85.4154,-123.261,0,-111.39,-139.416 0|0:13:5,0,3,0,4:5:195:0,3,0,4:0,102,0,136:-9.52592,-11.0311,-27.0793,-2.75798,-18.8119,-17.9088,-11.0311,-27.0793,-18.8119,-27.0793,0,-16.0567,-7.79746,-16.0567,-14.8526 0|0:34:15,0,4,2,13:15:575:0,4,2,13:0,141,70,411:-28.5156,-33.0311,-80.2484,-21.5448,-68.7688,-67.5647,-27.333,-74.5531,-63.0735,-73.9511,0,-47.2152,-35.7408,-41.5224,-43.3018 dDocent_Contig_10842 10 . T C 129.914 . AB=0.285714;ABP=11.386;AC=2;AF=0.333333;AN=6;AO=6;CIGAR=1X;DP=41;DPB=41;DPRA=0.525;EPP=16.0391;EPPR=79.0118;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=245;QR=1401;RO=35;RPL=0;RPP=16.0391;RPPR=79.0118;RPR=6;RUN=1;SAF=6;SAP=16.0391;SAR=0;SRF=35;SRP=79.0118;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:20:20,0:20:795:0:0:0,-6.0206,-71.8663 0/1:10:8,2:8:321:2:81:-4.67543,0,-26.2467 0/1:11:7,4:7:285:4:164:-11.8386,0,-22.7131 dDocent_Contig_10843 123 . G A 107.713 . AB=0.241379;ABP=19.8579;AC=2;AF=0.333333;AN=6;AO=7;CIGAR=1X;DP=32;DPB=32;DPRA=4.83333;EPP=18.2106;EPPR=57.2971;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=248;QR=897;RO=25;RPL=0;RPP=18.2106;RPPR=57.2971;RPR=7;RUN=1;SAF=0;SAP=18.2106;SAR=7;SRF=0;SRP=57.2971;SRR=25;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:10:8,2:8:287:2:72:-3.82642,0,-23.1662 0/0:3:3,0:3:108:0:0:0,-0.90309,-10.0752 0/1:19:14,5:14:502:5:176:-10.4654,0,-39.7977 dDocent_Contig_10844 153 . C T 129.336 . AB=0.333333;ABP=7.35324;AC=1;AF=0.166667;AN=6;AO=6;CIGAR=1X;DP=31;DPB=31;DPRA=2.76923;EPP=8.80089;EPPR=57.2971;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=217;QR=931;RO=25;RPL=5;RPP=8.80089;RPPR=57.2971;RPR=1;RUN=1;SAF=0;SAP=16.0391;SAR=6;SRF=0;SRP=57.2971;SRR=25;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:18:12,6:12:460:6:217:-14.4565,0,-36.3286 0/0:5:5,0:5:175:0:0:0,-1.50515,-16.088 0/0:8:8,0:8:296:0:0:0,-2.40824,-26.9887 dDocent_Contig_10845 16 . C T 124.778 . AB=0.222222;ABP=21.1059;AC=1;AF=0.166667;AN=6;AO=6;CIGAR=1X;DP=59;DPB=59;DPRA=1.6875;EPP=16.0391;EPPR=118.098;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=245;QR=2156;RO=53;RPL=0;RPP=16.0391;RPPR=118.098;RPR=6;RUN=1;SAF=6;SAP=16.0391;SAR=0;SRF=53;SRP=118.098;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:24:24,0:24:977:0:0:0,-7.22472,-88.2258 0/0:8:8,0:8:321:0:0:0,-2.40824,-29.2576 0/1:27:21,6:21:858:6:245:-14.3017,0,-69.4003 dDocent_Contig_10846 124 . C T 157.986 . AB=0.196721;ABP=51.7438;AC=3;AF=0.5;AN=6;AO=12;CIGAR=3M1X;DP=61;DPB=63.25;DPRA=0;EPP=29.068;EPPR=89.8692;GTI=0;LEN=1;MEANALT=2.66667;MQM=60;MQMR=56.1;NS=3;NUMALT=3;ODDS=0;PAIRED=1;PAIREDR=0.9;PAO=0;PQA=0;PQR=0;PRO=0;QA=406;QR=1316;RO=40;RPL=0;RPP=29.068;RPPR=89.8692;RPR=12;RUN=1;SAF=0;SAP=29.068;SAR=12;SRF=0;SRP=89.8692;SRR=40;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|1:27:19,3,2,3:19:624:3,2,3:51,63,97:-2.14675,-5.04277,-54.5717,-2.7791,-50.4094,-52.6757,0,-47.6513,-45.4513,-49.6157 0|1:8:4,1,0,3:4:133:1,0,3:7,0,106:-7.64174,-8.59568,-19.0453,-8.84586,-19.3463,-19.6335,0,-10.7046,-10.9731,-10.07 0|1:26:17,2,1,6:17:559:2,1,6:32,33,203:-11.4402,-14.8567,-54.9939,-14.158,-53.1982,-54.6288,0,-39.1295,-38.4595,-39.0523 dDocent_Contig_10847 7 . C T 76.8617 . AB=0.333333;ABP=5.9056;AC=2;AF=0.333333;AN=6;AO=4;CIGAR=1X3M1X;DP=20;DPB=20;DPRA=0.75;EPP=11.6962;EPPR=37.7539;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=0.875;PAO=0;PQA=0;PQR=0;PRO=0;QA=156;QR=621;RO=16;RPL=0;RPP=11.6962;RPPR=37.7539;RPR=4;RUN=1;SAF=4;SAP=11.6962;SAR=0;SRF=16;SRP=37.7539;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|0:8:8,0:8:309:0:0:0,-2.40824,-28.1727 0|1:9:6,3:6:234:3:117:-8.20111,0,-18.7218 0|1:3:2,1:2:78:1:39:-2.99347,0,-6.50038 dDocent_Contig_10848 30 . A T 136.16 . AB=0.166667;ABP=60.9162;AC=2;AF=0.333333;AN=6;AO=17;CIGAR=1X;DP=179;DPB=179;DPRA=0;EPP=39.9253;EPPR=354.789;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=654;QR=6071;RO=162;RPL=0;RPP=39.9253;RPPR=354.789;RPR=17;RUN=1;SAF=17;SAP=39.9253;SAR=0;SRF=162;SRP=354.789;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:119:112,7:112:4226:7:271:0,-11.0666,-355.654 0/1:20:17,3:17:613:3:111:-4.33263,0,-49.4682 0/1:40:33,7:33:1232:7:272:-12.8056,0,-99.1229 dDocent_Contig_10849 26 . C T 35.4774 . AB=0.25;ABP=7.35324;AC=1;AF=0.166667;AN=6;AO=3;CIGAR=1X;DP=31;DPB=31;DPRA=2.6;EPP=9.52472;EPPR=63.8115;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=121;QR=1130;RO=28;RPL=0;RPP=9.52472;RPPR=63.8115;RPR=3;RUN=1;SAF=3;SAP=9.52472;SAR=0;SRF=28;SRP=63.8115;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:18:17,1:17:688:1:39:0,-1.52198,-58.353 0/0:5:5,0:5:203:0:0:0,-1.50515,-18.6531 0/1:8:6,2:6:239:2:82:-5.37144,0,-19.4766 dDocent_Contig_10850 8 . G A 521.479 . AB=0.0862069;ABP=89.2702;AC=0;AF=0;AN=6;AO=5;CIGAR=3X;DP=59;DPB=59;DPRA=29;EPP=13.8677;EPPR=57.2971;GTI=0;LEN=1;MEANALT=3;MQM=60;MQMR=60;NS=3;NUMALT=3;ODDS=1.38778e-17;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=194;QR=960;RO=25;RPL=0;RPP=13.8677;RPPR=57.2971;RPR=5;RUN=1;SAF=5;SAP=13.8677;SAR=0;SRF=25;SRP=57.2971;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|0:23:12,1,9,1:12:460:1,9,1:39,336,39:-23.8788,-24.2839,-61.7419,0,-34.5424,-35.0395,-24.2839,-58.8365,-34.5424,-61.7419 0|0:1:0,0,1,0:0:0:0,1,0:0,31,0:-3.09945,-3.09945,-3.09945,-0.30103,-0.30103,0,-3.09945,-3.09945,-0.30103,-3.09945 0|0:35:13,4,10,8:13:500:4,10,8:155,396,295:-28.6899,-19.8685,-59.7149,0,-28.3196,-38.0449,-8.49182,-36.8039,-16.9399,-47.1295 dDocent_Contig_10851 10 . C T 521.043 . AB=0.275;ABP=38.1882;AC=1;AF=0.166667;AN=6;AO=28;CIGAR=1X;DP=208;DPB=208;DPRA=0;EPP=63.8115;EPPR=389.532;GTI=0;LEN=1;MEANALT=1.33333;MQM=60;MQMR=56.573;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=0.752809;PAO=0;PQA=0;PQR=0;PRO=0;QA=1093;QR=7162;RO=178;RPL=0;RPP=63.8115;RPPR=389.532;RPR=28;RUN=1;SAF=28;SAP=63.8115;SAR=0;SRF=178;SRP=389.532;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:80:58,22:58:2330:22:860:-53.6262,0,-178.18 0/0:36:33,3:33:1338:3:114:0,-0.205979,-107.086 0/0:92:87,3:87:3494:3:119:0,-16.3914,-295.599 dDocent_Contig_10853 23 . G A 185.666 . AB=0.290323;ABP=14.8483;AC=2;AF=0.333333;AN=6;AO=9;CIGAR=1X;DP=35;DPB=35;DPRA=3.875;EPP=22.5536;EPPR=59.4686;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=341;QR=989;RO=26;RPL=0;RPP=22.5536;RPPR=59.4686;RPR=9;RUN=1;SAF=9;SAP=22.5536;SAR=0;SRF=26;SRP=59.4686;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:20:13,7:13:494:7:266:-18.2789,0,-38.7799 0/0:4:4,0:4:159:0:0:0,-1.20412,-14.6921 0/1:11:9,2:9:336:2:75:-3.80826,0,-27.2774 dDocent_Contig_10854 13 . C A 1469.19 . AB=0.480769;ABP=3.34437;AC=2;AF=0.333333;AN=6;AO=52;CIGAR=1X;DP=132;DPB=132;DPRA=0;EPP=115.927;EPPR=176.728;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=6.93889e-18;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=2095;QR=3232;RO=80;RPL=0;RPP=115.927;RPPR=176.728;RPR=52;RUN=1;SAF=52;SAP=115.927;SAR=0;SRF=80;SRP=176.728;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:58:28,30:28:1139:30:1222:-92.7878,0,-85.3279 0/0:28:26,2:26:1052:2:82:0,-0.649162,-87.1869 0/1:46:26,20:26:1041:20:791:-57.6542,0,-80.1318 dDocent_Contig_10855 11 . C T 228.721 . AB=0.0749465;ABP=735.866;AC=1;AF=0.166667;AN=6;AO=58;CIGAR=4M1X;DP=868;DPB=867.8;DPRA=0;EPP=128.956;EPPR=1134.36;GTI=0;LEN=1;MEANALT=15;MQM=48.0517;MQMR=39.6762;NS=3;NUMALT=4;ODDS=1.11022e-16;PAIRED=0.672414;PAIREDR=0.350476;PAO=0;PQA=0;PQR=0;PRO=0;QA=2294;QR=20157;RO=525;RPL=0;RPP=128.956;RPPR=1143.03;RPR=58;RUN=1;SAF=58;SAP=128.956;SAR=0;SRF=524;SRP=1134.36;SRR=1;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|0:401:256,42,16,27,23:256:9833:42,16,27,23:1619,373,672,899:0,-2.82292,-615.914,-51.9138,-603.406,-672.833,-30.9325,-582.425,-631.516,-648.54,-11.4112,-562.919,-612.011,-591.03,-630.24 0|1:208:117,9,11,16,19:117:4459:9,11,16,19:346,235,526,755:-17.9417,-37.3743,-305.22,-37.7663,-292.525,-305.005,-11.8574,-266.628,-267.016,-277.603,0,-254.775,-255.163,-229.265,-264.848 0|0:259:152,20,7,25,16:152:5865:20,7,25,16:773,166,741,640:-8.45329,-18.7465,-383.169,-43.2708,-378.248,-411.61,0,-334.981,-359.508,-362.924,-16.4541,-351.437,-375.964,-332.696,-382.089 dDocent_Contig_10856 8 . G T 164.147 . AB=0.6;ABP=3.87889;AC=1;AF=0.166667;AN=6;AO=6;CIGAR=1X;DP=76;DPB=76;DPRA=0.30303;EPP=16.0391;EPPR=155.013;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=232;QR=2644;RO=70;RPL=0;RPP=16.0391;RPPR=155.013;RPR=6;RUN=1;SAF=6;SAP=16.0391;SAR=0;SRF=70;SRP=155.013;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:48:48,0:48:1805:0:0:0,-14.4494,-162.698 0/1:10:4,6:4:143:6:232:-18.2386,0,-10.2092 0/0:18:18,0:18:696:0:0:0,-5.41854,-62.9742 dDocent_Contig_10857 25 . C G 5717.87 . AB=0.493797;ABP=3.14501;AC=3;AF=0.5;AN=6;AO=199;CIGAR=1X1M1X3M2X;DP=403;DPB=403;DPRA=0;EPP=435.133;EPPR=307.016;GTI=0;LEN=1;MEANALT=7.66667;MQM=57.9045;MQMR=60;NS=3;NUMALT=2;ODDS=0;PAIRED=0.939698;PAIREDR=0.942857;PAO=0;PQA=0;PQR=0;PRO=0;QA=7718;QR=5535;RO=140;RPL=0;RPP=435.133;RPPR=307.016;RPR=199;RUN=1;SAF=199;SAP=435.133;SAR=0;SRF=140;SRP=307.016;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|1:160:75,70,3:75:2959:70,3:2719,121:-198.012,0,-222.403,-210.614,-233.5,-453.182 0|1:84:21,50,4:21:838:50,4:1959,162:-150.024,0,-53.9799,-142.985,-55.6712,-210.804 0|1:159:44,79,27:44:1738:79,27:3040,1065:-229.274,0,-119.233,-154.895,-55.3934,-289.787 dDocent_Contig_10858 23 . C T 241.651 . AB=0.150376;ABP=144.221;AC=2;AF=0.333333;AN=6;AO=20;CIGAR=1X;DP=163;DPB=163;DPRA=2.21667;EPP=46.4397;EPPR=313.531;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=745;QR=5672;RO=143;RPL=0;RPP=46.4397;RPPR=313.531;RPR=20;RUN=1;SAF=20;SAP=46.4397;SAR=0;SRF=143;SRP=313.531;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:98:88,10:88:3482:10:386:-5.58715,0,-283.925 0/1:35:25,10:25:1004:10:359:-22.1007,0,-80.1217 0/0:30:30,0:30:1186:0:0:0,-9.0309,-107.019 dDocent_Contig_10859 129 . G A 81.8696 . AB=0.315789;ABP=14.2105;AC=2;AF=0.333333;AN=6;AO=12;CIGAR=1X;DP=47;DPB=47;DPRA=2.11111;EPP=29.068;EPPR=79.0118;GTI=0;LEN=1;MEANALT=1;MQM=22.3333;MQMR=51.9714;NS=3;NUMALT=1;ODDS=0;PAIRED=0;PAIREDR=0.514286;PAO=0;PQA=0;PQR=0;PRO=0;QA=363;QR=1181;RO=35;RPL=0;RPP=29.068;RPPR=79.0118;RPR=12;RUN=1;SAF=0;SAP=29.068;SAR=12;SRF=0;SRP=79.0118;SRR=35;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:33:24,9:24:819:9:273:-8.61048,0,-63.3696 0/1:5:2,3:2:68:3:90:-3.08554,0,-3.82744 0/0:9:9,0:9:294:0:0:0,-2.70927,-26.5216 dDocent_Contig_10860 10 . C T 174.747 . AB=0.228571;ABP=25.4075;AC=1;AF=0.25;AN=4;AO=8;CIGAR=1X;DP=42;DPB=42;DPRA=5;EPP=20.3821;EPPR=76.8404;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=2;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=326;QR=1353;RO=34;RPL=0;RPP=20.3821;RPPR=76.8404;RPR=8;RUN=1;SAF=8;SAP=20.3821;SAR=0;SRF=34;SRP=76.8404;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:35:27,8:27:1074:8:326:-19.1736,0,-86.4071 ./.:.:.:.:.:.:.:. 0/0:7:7,0:7:279:0:0:0,-2.10721,-25.4802 dDocent_Contig_10861 107 . N G 96.1056 . AB=0;ABP=0;AC=2;AF=1;AN=2;AO=3;CIGAR=1X;DP=3;DPB=3;DPRA=0;EPP=9.52472;EPPR=0;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=0;NS=1;NUMALT=1;ODDS=6.68461;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=103;QR=0;RO=0;RPL=0;RPP=9.52472;RPPR=0;RPR=3;RUN=1;SAF=0;SAP=9.52472;SAR=3;SRF=0;SRP=0;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 1/1:3:0,3:0:0:3:103:-9.61002,-0.90309,0 ./.:.:.:.:.:.:.:. ./.:.:.:.:.:.:.:. dDocent_Contig_10862 131 . A G 1623.77 . AB=0.688889;ABP=30.9017;AC=4;AF=0.666667;AN=6;AO=72;CIGAR=3X3M1X;DP=102;DPB=102;DPRA=0;EPP=159.356;EPPR=61.6401;GTI=0;LEN=1;MEANALT=2;MQM=48.5972;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=0.708333;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=2460;QR=898;RO=27;RPL=0;RPP=159.356;RPPR=61.6401;RPR=72;RUN=1;SAF=0;SAP=159.356;SAR=72;SRF=0;SRP=61.6401;SRR=27;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|1:54:11,41:11:354:41:1399:-92.82,0,-16.2018 1|1:12:1,10:1:34:10:340:-23.0743,-0.204797,0 0|1:36:15,21:15:510:21:721:-50.005,0,-35.3872 dDocent_Contig_10863 121 . T C 45.9565 . AB=0.190476;ABP=20.4855;AC=2;AF=0.5;AN=4;AO=4;CIGAR=1X;DP=21;DPB=21;DPRA=0;EPP=11.6962;EPPR=39.9253;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=2;NUMALT=1;ODDS=0;PAIRED=0;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=148;QR=660;RO=17;RPL=0;RPP=11.6962;RPPR=39.9253;RPR=4;RUN=1;SAF=0;SAP=11.6962;SAR=4;SRF=0;SRP=39.9253;SRR=17;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:14:11,3:11:426:3:112:-6.23207,0,-34.4801 ./.:.:.:.:.:.:.:. 0/1:7:6,1:6:234:1:36:-1.49107,0,-19.3239 dDocent_Contig_10864 27 . C G 111.537 . AB=0.666667;ABP=4.45795;AC=1;AF=0.166667;AN=6;AO=4;CIGAR=1M3I3M1X;DP=41;DPB=43.4;DPRA=0.342857;EPP=11.6962;EPPR=83.3548;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=160;QR=1468;RO=37;RPL=0;RPP=11.6962;RPPR=83.3548;RPR=4;RUN=1;SAF=4;SAP=11.6962;SAR=0;SRF=37;SRP=83.3548;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|0:20:20,0:20:793:0:0:0,-6.0206,-71.6902 0|0:15:15,0:15:594:0:0:0,-4.51545,-53.8 0|1:6:2,4:2:81:4:160:-12.9776,0,-5.87955 dDocent_Contig_10865 48 . C T 43.5691 . AB=0.4;ABP=3.44459;AC=1;AF=0.166667;AN=6;AO=3;CIGAR=1X;DP=37;DPB=37;DPRA=0.65625;EPP=9.52472;EPPR=76.8404;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=121;QR=1341;RO=34;RPL=0;RPP=9.52472;RPPR=76.8404;RPR=3;RUN=1;SAF=3;SAP=9.52472;SAR=0;SRF=34;SRP=76.8404;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:16:16,0:16:618:0:0:0,-4.81648,-55.9498 0/1:5:3,2:3:123:2:81:-6.18058,0,-9.95964 0/0:16:15,1:15:600:1:40:0,-0.820801,-50.3417 dDocent_Contig_10866 9 . C T 74.7433 . AB=0.194444;ABP=32.2045;AC=2;AF=0.333333;AN=6;AO=8;CIGAR=1X;DP=51;DPB=51;DPRA=0;EPP=20.3821;EPPR=96.3836;GTI=0;LEN=1;MEANALT=1;MQM=59.5;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=260;QR=1645;RO=43;RPL=0;RPP=20.3821;RPPR=96.3836;RPR=8;RUN=1;SAF=8;SAP=20.3821;SAR=0;SRF=43;SRP=96.3836;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:28:22,6:22:835:6:190:-8.97969,0,-67.0413 0/1:8:7,1:7:266:1:35:-1.08833,0,-21.8935 0/0:15:14,1:14:544:1:35:0,-1.01682,-45.8075 dDocent_Contig_10867 33 . T A 57.0418 . AB=0.125;ABP=81.1833;AC=2;AF=0.333333;AN=6;AO=8;CIGAR=1X;DP=68;DPB=68;DPRA=8;EPP=20.3821;EPPR=133.299;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=307;QR=2278;RO=60;RPL=0;RPP=20.3821;RPPR=133.299;RPR=8;RUN=1;SAF=8;SAP=20.3821;SAR=0;SRF=60;SRP=133.299;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:47:41,6:41:1570:6:232:-7.10049,0,-127.415 0/0:4:4,0:4:152:0:0:0,-1.20412,-14.0487 0/1:17:15,2:15:556:2:75:-2.00208,0,-45.2476 dDocent_Contig_10869 16 . A G 7908.67 . AB=0.0639854;ABP=906.252;AC=0;AF=0;AN=6;AO=35;CIGAR=1X2M2X2M;DP=547;DPB=545.429;DPRA=0;EPP=79.0118;EPPR=304.845;GTI=0;LEN=1;MEANALT=11.3333;MQM=60;MQMR=59.3094;NS=3;NUMALT=4;ODDS=0;PAIRED=1;PAIREDR=0.942446;PAO=0;PQA=0;PQR=0;PRO=0;QA=1348;QR=5469;RO=139;RPL=0;RPP=79.0118;RPPR=304.845;RPR=35;RUN=1;SAF=35;SAP=79.0118;SAR=0;SRF=139;SRP=304.845;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|0:265:72,14,6,121,7:72:2821:14,6,121,7:538,233,4533,271:-349.549,-327.058,-554.807,-352.079,-539.878,-582.236,0,-187.8,-212.82,-195.539,-348.969,-536.768,-561.789,-209.71,-578.826 0|0:55:14,6,4,21,5:14:549:6,4,21,5:225,147,784,201:-59.9637,-45.7503,-89.0948,-52.1635,-78.8865,-96.1097,0,-26.7247,-33.1373,-38.8289,-47.611,-74.3349,-80.7479,-28.5841,-91.2575 0|0:227:53,15,0,131,0:53:2099:15,0,131,0:585,0,4918,0:-386.878,-354.744,-521.041,-402.832,-525.556,-573.644,0,-122.723,-170.81,-131.375,-402.832,-525.556,-573.644,-170.81,-573.644 dDocent_Contig_10870 13 . C T 87.8846 . AB=0.444444;ABP=3.25157;AC=1;AF=0.25;AN=4;AO=4;CIGAR=1X;DP=16;DPB=16;DPRA=1.28571;EPP=11.6962;EPPR=29.068;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=2;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=146;QR=463;RO=12;RPL=0;RPP=11.6962;RPPR=29.068;RPR=4;RUN=1;SAF=4;SAP=11.6962;SAR=0;SRF=12;SRP=29.068;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:7:7,0:7:261:0:0:0,-2.10721,-23.8359 ./.:.:.:.:.:.:.:. 0/1:9:5,4:5:202:4:146:-10.7884,0,-15.8526 dDocent_Contig_10871 185 . A G 65.3829 . AB=0.3;ABP=6.48466;AC=1;AF=0.166667;AN=6;AO=3;CIGAR=1X;DP=34;DPB=34;DPRA=0.833333;EPP=9.52472;EPPR=70.3259;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=122;QR=1221;RO=31;RPL=3;RPP=9.52472;RPPR=70.3259;RPR=0;RUN=1;SAF=0;SAP=9.52472;SAR=3;SRF=0;SRP=70.3259;SRR=31;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:10:10,0:10:409:0:0:0,-3.0103,-37.1706 0/1:10:7,3:7:270:3:122:-8.36219,0,-21.654 0/0:14:14,0:14:542:0:0:0,-4.21442,-49.1111 dDocent_Contig_10872 107 . N C 2425.41 . AB=0.818182;ABP=12.6832;AC=6;AF=1;AN=6;AO=80;CIGAR=1X4M;DP=86;DPB=86;DPRA=0;EPP=176.728;EPPR=0;GTI=0;LEN=1;MEANALT=2;MQM=60;MQMR=0;NS=3;NUMALT=2;ODDS=3.46945e-18;PAIRED=1;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=2689;QR=0;RO=0;RPL=0;RPP=176.728;RPPR=0;RPR=80;RUN=1;SAF=0;SAP=176.728;SAR=80;SRF=0;SRP=0;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 1|1:41:0,3,38:0:0:3,38:104,1276:-114.789,-106.335,-105.432,-11.4391,-2.63914,0 1|1:34:0,1,33:0:0:1,33:34,1114:-100.222,-97.4636,-97.1626,-9.93399,-6.83611,0 1|1:11:0,2,9:0:0:2,9:55,299:-28.8607,-24.5242,-23.9222,-4.62185,0,-1.91258 dDocent_Contig_10873 44 . A G 248.417 . AB=0.529412;ABP=3.13803;AC=2;AF=0.333333;AN=6;AO=9;CIGAR=1M1X4M;DP=40;DPB=41.3333;DPRA=0.369565;EPP=22.5536;EPPR=65.983;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=2;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=363;QR=1146;RO=29;RPL=0;RPP=22.5536;RPPR=65.983;RPR=9;RUN=1;SAF=9;SAP=22.5536;SAR=0;SRF=29;SRP=65.983;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|1:12:7,0,5:7:277:0,5:0,202:-14.9495,-17.0567,-39.8495,0,-23.1929,-21.6878 0|0:23:21,2,0:21:829:2,0:71,0:0,-0.183313,-68.1878,-6.32163,-68.7898,-74.5699 0|1:5:1,0,4:1:40:0,4:0,161:-13.3697,-13.6708,-16.9654,0,-3.69465,-2.49053 dDocent_Contig_10874 76 . G A 64.3623 . AB=0.2;ABP=22.5536;AC=3;AF=0.5;AN=6;AO=5;CIGAR=1X;DP=25;DPB=25;DPRA=0;EPP=13.8677;EPPR=46.4397;GTI=0;LEN=1;MEANALT=1;MQM=59.6;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=0.8;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=189;QR=744;RO=20;RPL=5;RPP=13.8677;RPPR=46.4397;RPR=0;RUN=1;SAF=5;SAP=13.8677;SAR=0;SRF=20;SRP=46.4397;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:11:8,3:8:309:3:116:-7.50637,0,-24.8616 0/1:5:4,1:4:156:1:39:-2.39141,0,-12.9121 0/1:9:8,1:8:279:1:34:-0.689005,0,-22.7356 dDocent_Contig_10876 11 . T G 129.966 . AB=0.5;ABP=3.0103;AC=1;AF=0.166667;AN=6;AO=5;CIGAR=1X;DP=34;DPB=34;DPRA=0.833333;EPP=13.8677;EPPR=65.983;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=0;PAIREDR=0.965517;PAO=0;PQA=0;PQR=0;PRO=0;QA=194;QR=1174;RO=29;RPL=0;RPP=13.8677;RPPR=65.983;RPR=5;RUN=1;SAF=5;SAP=13.8677;SAR=0;SRF=29;SRP=65.983;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:13:13,0:13:528:0:0:0,-3.91339,-47.866 0/1:10:5,5:5:198:5:194:-14.8206,0,-15.1867 0/0:11:11,0:11:448:0:0:0,-3.31133,-40.676 dDocent_Contig_10877 9 . A G 766.031 . AB=0.325581;ABP=25.735;AC=2;AF=0.333333;AN=6;AO=28;CIGAR=1X6M;DP=86;DPB=86;DPRA=0;EPP=63.8115;EPPR=63.8115;GTI=0;LEN=1;MEANALT=4.33333;MQM=60;MQMR=60;NS=3;NUMALT=6;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=979;QR=1094;RO=28;RPL=0;RPP=63.8115;RPPR=63.8115;RPR=28;RUN=1;SAF=28;SAP=63.8115;SAR=0;SRF=28;SRP=63.8115;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|1:53:18,0,0,5,20,3,6:18:704:0,0,5,20,3,6:0,0,154,686,115,246:-50.2777,-55.6962,-113.595,-55.6962,-113.595,-113.595,-44.6633,-102.559,-102.559,-101.054,0,-57.9094,-57.9094,-46.8818,-51.8888,-46.256,-104.157,-104.157,-93.122,-48.4715,-103.254,-35.3777,-93.2836,-93.2836,-82.2488,-37.5956,-83.8451,-91.4774 0|1:14:4,0,0,2,6,0,2:4:152:0,0,2,6,0,2:0,0,62,228,0,75:-17.5253,-18.7294,-31.2011,-18.7294,-31.2011,-31.2011,-14.3128,-26.7788,-26.7788,-26.1767,0,-12.4918,-12.4918,-8.07996,-10.6856,-18.7294,-31.2011,-31.2011,-26.7788,-12.4918,-31.2011,-12.5826,-25.0566,-25.0566,-20.6368,-6.34194,-25.0566,-24.4545 0|0:19:6,3,2,1,2,0,5:6:238:3,2,1,2,0,5:117,75,31,65,0,196:-14.323,-6.50573,-25.2069,-9.98474,-19.9667,-28.9845,-13.9185,-23.8982,-27.3745,-33.2159,-10.8909,-20.8708,-24.3472,-28.2778,-29.8874,-16.1292,-26.11,-29.5865,-33.5169,-30.4894,-35.7297,0,-9.98739,-13.4655,-17.3983,-14.3709,-19.6093,-18.1042 dDocent_Contig_10878 13 . C A 124.291 . AB=0.3;ABP=9.95901;AC=2;AF=0.5;AN=4;AO=6;CIGAR=1X;DP=20;DPB=20;DPRA=0;EPP=16.0391;EPPR=33.4109;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=2;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=233;QR=570;RO=14;RPL=0;RPP=16.0391;RPPR=33.4109;RPR=6;RUN=1;SAF=6;SAP=16.0391;SAR=0;SRF=14;SRP=33.4109;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:12:7,5:7:286:5:192:-14.0336,0,-22.5025 ./.:.:.:.:.:.:.:. 0/1:8:7,1:7:284:1:41:-1.68633,0,-23.5255 dDocent_Contig_10879 8 . G T 47.7941 . AB=0.102941;ABP=189.246;AC=2;AF=0.333333;AN=6;AO=14;CIGAR=1X;DP=236;DPB=236;DPRA=0.68;EPP=33.4109;EPPR=485.077;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=59.973;NS=3;NUMALT=1;ODDS=6.93889e-18;PAIRED=1;PAIREDR=0.972973;PAO=0;PQA=0;PQR=0;PRO=0;QA=528;QR=8433;RO=222;RPL=0;RPP=33.4109;RPPR=485.077;RPR=14;RUN=1;SAF=14;SAP=33.4109;SAR=0;SRF=222;SRP=485.077;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:100:100,0:100:3809:0:0:0,-30.103,-342.917 0/1:57:50,7:50:1862:7:260:-6.59608,0,-150.668 0/1:79:72,7:72:2762:7:268:-0.702457,0,-224.976 dDocent_Contig_10880 34 . T A 1161.75 . AB=0.111111;ABP=38.4777;AC=0;AF=0;AN=6;AO=3;CIGAR=1X1M1X2M1X3M;DP=68;DPB=68;DPRA=0;EPP=9.52472;EPPR=35.5824;GTI=0;LEN=1;MEANALT=4;MQM=60;MQMR=60;NS=3;NUMALT=4;ODDS=0;PAIRED=0;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=120;QR=596;RO=15;RPL=0;RPP=9.52472;RPPR=35.5824;RPR=3;RUN=1;SAF=3;SAP=9.52472;SAR=0;SRF=15;SRP=35.5824;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|0:30:5,0,4,14,6:5:196:0,4,14,6:0,163,565,246:-49.2612,-50.7664,-66.8825,-37.3186,-53.4345,-52.2303,-4.1954,-20.3089,-6.85996,-16.0945,-30.4604,-46.5762,-33.1277,0,-44.7701 0|0:11:3,0,0,8,0:3:122:0,0,8,0:0,0,304,0:-24.4013,-25.3044,-35.3749,-25.3044,-35.3749,-35.3749,0,-10.4694,-10.4694,-8.06116,-25.3044,-35.3749,-35.3749,-10.4694,-35.3749 0|0:27:7,3,1,15,0:7:278:3,1,15,0:120,39,608,0:-48.0357,-40.2584,-62.2398,-46.9377,-59.9376,-69.5213,0,-13.0001,-19.6808,-18.3706,-50.1429,-63.1429,-69.8223,-22.886,-73.0277 dDocent_Contig_10881 125 . T G 312.882 . AB=0.206897;ABP=46.29;AC=4;AF=0.666667;AN=6;AO=15;CIGAR=1X2M1I4M;DP=61;DPB=63.1429;DPRA=0;EPP=35.5824;EPPR=98.5551;GTI=0;LEN=1;MEANALT=1.33333;MQM=60;MQMR=60;NS=3;NUMALT=2;ODDS=0;PAIRED=1;PAIREDR=0.954545;PAO=0;PQA=0;PQR=0;PRO=0;QA=564;QR=1601;RO=44;RPL=0;RPP=35.5824;RPPR=98.5551;RPR=15;RUN=1;SAF=0;SAP=35.5824;SAR=15;SRF=0;SRP=98.5551;SRR=44;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|1:37:29,8,0:29:1054:8,0:301,0:-16.3097,0,-84.0328,-25.0396,-86.441,-111.107 1|1:3:0,3,0:0:0:3,0:113,0:-10.5395,-0.90309,0,-10.5395,-0.90309,-10.5395 0|1:21:15,4,2:15:547:4,2:150,18:-7.96144,0,-43.7252,-11.5539,-43.9437,-55.6309 dDocent_Contig_10883 121 . T C 135.556 . AB=0.242424;ABP=22.0271;AC=1;AF=0.166667;AN=6;AO=10;CIGAR=1X;DP=62;DPB=62;DPRA=15;EPP=24.725;EPPR=113.755;GTI=0;LEN=1;MEANALT=1.5;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=338;QR=1705;RO=51;RPL=0;RPP=24.725;RPPR=113.755;RPR=10;RUN=1;SAF=0;SAP=24.725;SAR=10;SRF=0;SRP=113.755;SRR=51;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:33:24,8:24:816:8:272:-15.0781,0,-64.041 0/0:2:2,0:2:64:0:0:0,-0.60206,-6.07837 0/0:27:25,2:25:825:2:66:0,-1.85963,-68.2867 dDocent_Contig_10884 49 . T G 79.8067 . AB=0.333333;ABP=5.9056;AC=2;AF=0.333333;AN=6;AO=5;CIGAR=1X;DP=56;DPB=56;DPRA=0;EPP=13.8677;EPPR=113.755;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=201;QR=2041;RO=51;RPL=0;RPP=13.8677;RPPR=113.755;RPR=5;RUN=1;SAF=5;SAP=13.8677;SAR=0;SRF=51;SRP=113.755;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:44:43,1:43:1717:1:40:0,-9.24964,-150.758 0/1:5:2,3:2:78:3:120:-9.68275,0,-5.89815 0/1:7:6,1:6:246:1:41:-1.98736,0,-20.4129 dDocent_Contig_10885 8 . G A 183.15 . AB=0.421053;ABP=4.03889;AC=2;AF=0.333333;AN=6;AO=8;CIGAR=1X;DP=28;DPB=28;DPRA=1.05556;EPP=20.3821;EPPR=46.4397;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=298;QR=760;RO=20;RPL=0;RPP=20.3821;RPPR=46.4397;RPR=8;RUN=1;SAF=8;SAP=20.3821;SAR=0;SRF=20;SRP=46.4397;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:15:9,6:9:348:6:220:-15.6385,0,-27.1648 0/1:4:2,2:2:76:2:78:-6.19935,0,-6.01055 0/0:9:9,0:9:336:0:0:0,-2.70927,-30.5918 dDocent_Contig_10886 8 . G A 48.0169 . AB=0.214286;ABP=12.937;AC=1;AF=0.166667;AN=6;AO=3;CIGAR=1X;DP=31;DPB=31;DPRA=1.64706;EPP=9.52472;EPPR=63.8115;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=113;QR=1058;RO=28;RPL=0;RPP=9.52472;RPPR=63.8115;RPR=3;RUN=1;SAF=3;SAP=9.52472;SAR=0;SRF=28;SRP=63.8115;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:14:11,3:11:422:3:113:-6.32455,0,-34.1178 0/0:8:8,0:8:288:0:0:0,-2.40824,-26.2627 0/0:9:9,0:9:348:0:0:0,-2.70927,-31.6804 dDocent_Contig_10887 7 . C T 42.9273 . AB=0.2;ABP=14.7363;AC=1;AF=0.166667;AN=6;AO=3;CIGAR=1X;DP=42;DPB=42;DPRA=1.11111;EPP=9.52472;EPPR=87.6977;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=114;QR=1494;RO=39;RPL=0;RPP=9.52472;RPPR=87.6977;RPR=3;RUN=1;SAF=3;SAP=9.52472;SAR=0;SRF=39;SRP=87.6977;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:23:23,0:23:893:0:0:0,-6.92369,-80.6892 0/1:15:12,3:12:445:3:114:-6.11653,0,-35.8777 0/0:4:4,0:4:156:0:0:0,-1.20412,-14.4173 dDocent_Contig_10888 1 . N G 77.8076 . AB=0;ABP=0;AC=2;AF=1;AN=2;AO=2;CIGAR=1X;DP=2;DPB=2;DPRA=0;EPP=7.35324;EPPR=0;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=0;NS=1;NUMALT=1;ODDS=5.99146;PAIRED=1;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=82;QR=0;RO=0;RPL=0;RPP=7.35324;RPPR=0;RPR=2;RUN=1;SAF=2;SAP=7.35324;SAR=0;SRF=0;SRP=0;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 1/1:2:0,2:0:0:2:82:-7.77968,-0.60206,0 ./.:.:.:.:.:.:.:. ./.:.:.:.:.:.:.:. dDocent_Contig_10889 7 . C T 85.7168 . AB=0.0833333;ABP=39.2015;AC=2;AF=0.333333;AN=6;AO=2;CIGAR=1X1M;DP=52;DPB=52;DPRA=1.04348;EPP=7.35324;EPPR=92.0407;GTI=0;LEN=1;MEANALT=2;MQM=60;MQMR=60;NS=3;NUMALT=2;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=77;QR=1580;RO=41;RPL=0;RPP=7.35324;RPPR=92.0407;RPR=2;RUN=1;SAF=2;SAP=7.35324;SAR=0;SRF=41;SRP=92.0407;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|0:23:20,2,0:20:768:2,0:69,0:0,-0.312383,-62.9386,-6.0206,-63.5407,-69.1431 0|1:5:3,2,0:3:116:2,0:70,0:-5.14107,0,-9.31255,-6.04416,-9.91461,-15.5944 0|1:24:18,4,2:18:696:4,2:151,77:-6.95268,0,-55.9668,-6.04634,-50.8487,-62.6212 dDocent_Contig_10890 8 . G A 83.8468 . AB=0.4;ABP=3.87889;AC=1;AF=0.166667;AN=6;AO=7;CIGAR=1X;DP=113;DPB=113;DPRA=0.474138;EPP=18.2106;EPPR=233.186;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=0.981132;PAO=0;PQA=0;PQR=0;PRO=0;QA=260;QR=4077;RO=106;RPL=0;RPP=18.2106;RPPR=233.186;RPR=7;RUN=1;SAF=7;SAP=18.2106;SAR=0;SRF=106;SRP=233.186;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:58:58,0:58:2221:0:0:0,-17.4597,-200.111 0/1:10:6,4:6:230:4:143:-10.2086,0,-18.056 0/0:45:42,3:42:1626:3:117:0,-2.63597,-135.693 dDocent_Contig_10891 93 . T C 526.771 . AB=0.431818;ABP=4.78696;AC=4;AF=0.666667;AN=6;AO=22;CIGAR=1X3M;DP=47;DPB=47;DPRA=0;EPP=50.7827;EPPR=46.4397;GTI=0;LEN=1;MEANALT=1.33333;MQM=60;MQMR=60;NS=3;NUMALT=2;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=748;QR=684;RO=20;RPL=22;RPP=50.7827;RPPR=46.4397;RPR=0;RUN=1;SAF=22;SAP=50.7827;SAR=0;SRF=20;SRP=46.4397;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|1:30:13,5,12:13:446:5,12:170,416:-29.9051,-20.0306,-54.7362,0,-22.4258,-32.6024 0|1:14:7,0,7:7:238:0,7:0,245:-18.1768,-20.284,-39.5845,0,-19.6454,-17.5382 1|1:3:0,0,3:0:0:0,3:0,87:-8.11768,-8.11768,-8.11768,-0.90309,-0.90309,0 dDocent_Contig_10893 62 . A G 391.17 . AB=0.4;ABP=6.48466;AC=2;AF=0.333333;AN=6;AO=16;CIGAR=1X;DP=41;DPB=41;DPRA=20;EPP=37.7539;EPPR=57.2971;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=3.46945e-18;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=600;QR=985;RO=25;RPL=16;RPP=37.7539;RPPR=57.2971;RPR=0;RUN=1;SAF=16;SAP=37.7539;SAR=0;SRF=25;SRP=57.2971;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:24:14,10:14:547:10:390:-28.2275,0,-42.3392 0/1:16:10,6:10:399:6:210:-14.4117,0,-31.4518 0/0:1:1,0:1:39:0:0:0,-0.30103,-3.89656 dDocent_Contig_10894 8 . G A 91.1373 . AB=0.333333;ABP=6.62942;AC=1;AF=0.166667;AN=6;AO=5;CIGAR=1X1M1X3M1X1M2X;DP=26;DPB=26;DPRA=2.72727;EPP=13.8677;EPPR=48.6112;GTI=0;LEN=1;MEANALT=1;MQM=34;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=0;PAIREDR=0.952381;PAO=0;PQA=0;PQR=0;PRO=0;QA=198;QR=825;RO=21;RPL=0;RPP=13.8677;RPPR=48.6112;RPR=5;RUN=1;SAF=5;SAP=13.8677;SAR=0;SRF=21;SRP=48.6112;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|1:15:10,5:10:396:5:198:-10.6365,0,-31.4843 0|0:6:6,0:6:235:0:0:0,-1.80618,-21.5218 0|0:5:5,0:5:194:0:0:0,-1.50515,-17.8317 dDocent_Contig_10896 32 . G A 1218.47 . AB=0.61194;ABP=10.3026;AC=3;AF=0.5;AN=6;AO=41;CIGAR=1X;DP=67;DPB=67;DPRA=0;EPP=92.0407;EPPR=59.4686;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=1628;QR=1046;RO=26;RPL=0;RPP=92.0407;RPPR=59.4686;RPR=41;RUN=1;SAF=41;SAP=92.0407;SAR=0;SRF=26;SRP=59.4686;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:45:13,32:13:519:32:1275:-101.47,0,-33.5104 0/1:5:2,3:2:80:3:119:-9.58986,0,-6.08664 0/1:17:11,6:11:447:6:234:-16.3103,0,-35.4684 dDocent_Contig_10898 19 . A C 1007.24 . AB=0.301471;ABP=49.5692;AC=3;AF=0.5;AN=6;AO=41;CIGAR=1X;DP=136;DPB=136;DPRA=0;EPP=92.0407;EPPR=209.3;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=1624;QR=3771;RO=95;RPL=0;RPP=92.0407;RPPR=209.3;RPR=41;RUN=1;SAF=41;SAP=92.0407;SAR=0;SRF=95;SRP=209.3;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:58:43,15:43:1701:15:584:-35.4337,0,-135.855 0/1:26:9,17:9:359:17:677:-53.4322,0,-24.8455 0/1:52:43,9:43:1711:9:363:-17.3807,0,-138.558 dDocent_Contig_10900 50 . G C 850.832 . AB=0.407895;ABP=8.61041;AC=3;AF=0.5;AN=6;AO=31;CIGAR=1X;DP=76;DPB=76;DPRA=0;EPP=70.3259;EPPR=100.727;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=0;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=1249;QR=1763;RO=45;RPL=31;RPP=70.3259;RPPR=100.727;RPR=0;RUN=1;SAF=31;SAP=70.3259;SAR=0;SRF=45;SRP=100.727;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:44:20,24:20:766:24:965:-73.9031,0,-56.0038 0/1:7:5,2:5:186:2:80:-5.48458,0,-14.9857 0/1:25:20,5:20:811:5:204:-11.2183,0,-65.7793 dDocent_Contig_10903 108 . G A 89.4854 . AB=0.357143;ABP=5.49198;AC=1;AF=0.166667;AN=6;AO=5;CIGAR=1X;DP=32;DPB=32;DPRA=1.55556;EPP=13.8677;EPPR=59.4686;GTI=0;LEN=1;MEANALT=1;MQM=50;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=160;QR=808;RO=26;RPL=0;RPP=13.8677;RPPR=59.4686;RPR=5;RUN=1;SAF=0;SAP=13.8677;SAR=5;SRF=0;SRP=59.4686;SRR=26;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:14:9,5:9:259:5:160:-10.4713,0,-19.3763 0/0:5:4,0:4:105:0:0:0,-1.20412,-9.60174 0/0:13:13,0:13:444:0:0:0,-3.91339,-40.2874 dDocent_Contig_10905 16 . A G 91.2675 . AB=0.217391;ABP=18.9659;AC=1;AF=0.25;AN=4;AO=6;CIGAR=1X2M1X2M1X;DP=50;DPB=50;DPRA=0;EPP=16.0391;EPPR=94.2121;GTI=0;LEN=1;MEANALT=2;MQM=60;MQMR=60;NS=2;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=230;QR=1640;RO=42;RPL=0;RPP=16.0391;RPPR=94.2121;RPR=6;RUN=1;SAF=6;SAP=16.0391;SAR=0;SRF=42;SRP=94.2121;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|1:23:16,5:16:627:5:190:-10.8257,0,-50.1412 .:.:.:.:.:.:.:. 0|0:27:26,1:26:1013:1:40:0,-4.13213,-87.4765 dDocent_Contig_10906 176 . C T 694.198 . AB=0.464286;ABP=3.63072;AC=3;AF=0.5;AN=6;AO=26;CIGAR=1X;DP=56;DPB=56;DPRA=0;EPP=59.4686;EPPR=68.1545;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=1008;QR=1179;RO=30;RPL=26;RPP=59.4686;RPPR=68.1545;RPR=0;RUN=1;SAF=0;SAP=59.4686;SAR=26;SRF=0;SRP=68.1545;SRR=30;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:15:4,11:4:161:11:433:-34.808,0,-10.3598 0/1:14:9,5:9:345:5:201:-14.2561,0,-27.1893 0/1:27:17,10:17:673:10:374:-25.8786,0,-52.7737 dDocent_Contig_10908 8 . G A 43741.8 . AB=0;ABP=0;AC=6;AF=1;AN=6;AO=1350;CIGAR=1X;DP=1379;DPB=1379;DPRA=0;EPP=2856.85;EPPR=65.983;GTI=0;LEN=1;MEANALT=1;MQM=54.3207;MQMR=59.5172;NS=3;NUMALT=1;ODDS=0;PAIRED=0.892593;PAIREDR=0.137931;PAO=0;PQA=0;PQR=0;PRO=0;QA=51473;QR=1101;RO=29;RPL=0;RPP=2934.5;RPPR=65.983;RPR=1350;RUN=1;SAF=1341;SAP=2856.85;SAR=9;SRF=29;SRP=65.983;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 1/1:560:16,544:16:611:544:20780:-1733.54,-113.25,0 1/1:536:8,528:8:309:528:20094:-1742.55,-133.179,0 1/1:283:5,278:5:181:278:10599:-897.493,-68.5959,0 dDocent_Contig_10910 8 . G A 57.4274 . AB=0.333333;ABP=5.18177;AC=1;AF=0.166667;AN=6;AO=3;CIGAR=1X;DP=25;DPB=25;DPRA=1.125;EPP=9.52472;EPPR=50.7827;GTI=0;LEN=1;MEANALT=1;MQM=44;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=0;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=113;QR=840;RO=22;RPL=0;RPP=9.52472;RPPR=50.7827;RPR=3;RUN=1;SAF=3;SAP=9.52472;SAR=0;SRF=22;SRP=50.7827;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:10:10,0:10:388:0:0:0,-3.0103,-35.2779 0/1:9:6,3:6:218:3:113:-7.56662,0,-17.2582 0/0:6:6,0:6:234:0:0:0,-1.80618,-21.4311 dDocent_Contig_10914 32 . G A 1779.73 . AB=0.03125;ABP=186.228;AC=1;AF=0.166667;AN=6;AO=3;CIGAR=2X;DP=151;DPB=151;DPRA=0;EPP=9.52472;EPPR=187.585;GTI=0;LEN=1;MEANALT=2;MQM=60;MQMR=60;NS=3;NUMALT=2;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=122;QR=3295;RO=85;RPL=0;RPP=9.52472;RPPR=187.585;RPR=3;RUN=1;SAF=3;SAP=9.52472;SAR=0;SRF=85;SRP=187.585;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|0:86:51,1,34:51:1974:1,34:40,1365:-97.1209,-109.178,-271.012,0,-158.835,-151.895 0|1:10:6,2,2:6:236:2,2:82,82:-4.96198,0,-18.7982,0,-12.6279,-18.7982 0|0:55:28,0,27:28:1085:0,27:0,1084:-81.288,-89.7169,-178.842,0,-89.5198,-81.392 dDocent_Contig_10916 107 . N G 157.064 . AB=0;ABP=0;AC=6;AF=1;AN=6;AO=5;CIGAR=1X;DP=5;DPB=5;DPRA=0;EPP=13.8677;EPPR=0;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=0;NS=3;NUMALT=1;ODDS=1.69407e-21;PAIRED=1;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=158;QR=0;RO=0;RPL=0;RPP=13.8677;RPPR=0;RPR=5;RUN=1;SAF=0;SAP=13.8677;SAR=5;SRF=0;SRP=0;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 1/1:3:0,3:0:0:3:104:-9.70309,-0.90309,0 1/1:1:0,1:0:0:1:20:-1.99996,-0.30103,0 1/1:1:0,1:0:0:1:34:-3.39891,-0.30103,0 dDocent_Contig_10917 7 . C T 2845.16 . AB=0.0810811;ABP=59.4099;AC=0;AF=0;AN=6;AO=3;CIGAR=2M1X3M;DP=163;DPB=157.5;DPRA=0;EPP=9.52472;EPPR=46.4397;GTI=0;LEN=1;MEANALT=7;MQM=46;MQMR=60;NS=3;NUMALT=6;ODDS=0;PAIRED=0;PAIREDR=0.75;PAO=0;PQA=0;PQR=0;PRO=0;QA=117;QR=770;RO=20;RPL=0;RPP=9.52472;RPPR=46.4397;RPR=3;RUN=1;SAF=3;SAP=9.52472;SAR=0;SRF=20;SRP=46.4397;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|0:79:11,16,0,3,0,7,40:11:422:16,0,3,0,7,40:464,0,117,0,271,1606:-128.256,-98.9845,-128.805,-131.567,-133.621,-166.209,-122.062,-124.118,-156.703,-155.8,-131.567,-133.621,-166.209,-156.703,-166.209,-109.302,-111.36,-143.944,-134.439,-143.944,-141.837,0,-2.09449,-34.6598,-25.151,-34.6598,-12.385,-22.6186 0|0:37:3,6,3,2,3,0,18:3:116:6,3,2,3,0,18:160,115,76,117,0,672:-55.4788,-45.4344,-53.1581,-46.9396,-45.5242,-55.5686,-50.237,-48.8208,-50.3268,-59.1668,-46.9649,-45.5495,-47.0547,-50.352,-55.5939,-56.3819,-54.9642,-56.4717,-59.7688,-56.497,-65.9134,-1.38976,0,-1.47988,-4.78028,-1.50521,-10.929,-5.51046 0|0:47:6,3,2,3,0,0,33:6:232:3,2,3,0,0,33:89,76,94,0,0,1313:-106.288,-101.808,-119.961,-101.869,-114.639,-120.324,-100.658,-113.429,-113.49,-118.812,-108.094,-120.864,-120.926,-119.715,-127.152,-108.094,-120.864,-120.926,-119.715,-127.152,-127.152,0,-12.8148,-12.8576,-11.6566,-19.089,-19.089,-9.15497 dDocent_Contig_10918 25 . G A 894.196 . AB=0.574074;ABP=5.5839;AC=3;AF=0.5;AN=6;AO=31;CIGAR=1X;DP=54;DPB=54;DPRA=0;EPP=70.3259;EPPR=52.9542;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=1224;QR=922;RO=23;RPL=0;RPP=70.3259;RPPR=52.9542;RPR=31;RUN=1;SAF=31;SAP=70.3259;SAR=0;SRF=23;SRP=52.9542;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:23:5,18:5:196:18:723:-58.4692,0,-11.0902 0/1:12:7,5:7:286:5:182:-13.1166,0,-22.5025 0/1:19:11,8:11:440:8:319:-23.3568,0,-34.2348 dDocent_Contig_10919 98 . N A 2178.57 . AB=0;ABP=0;AC=6;AF=1;AN=6;AO=136;CIGAR=1X;DP=136;DPB=136;DPRA=0;EPP=203.297;EPPR=0;GTI=0;LEN=1;MEANALT=1;MQM=20.7647;MQMR=0;NS=3;NUMALT=1;ODDS=0;PAIRED=0.544118;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=4689;QR=0;RO=0;RPL=134;RPP=281.214;RPPR=0;RPR=2;RUN=1;SAF=126;SAP=217.858;SAR=10;SRF=0;SRP=0;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 1/1:34:0,34:0:0:34:1201:-53.1748,-10.235,0 1/1:56:0,56:0:0:56:1925:-94.3791,-16.8577,0 1/1:46:0,46:0:0:46:1563:-69.8262,-13.8474,0 dDocent_Contig_10920 75 . A T 271.164 . AB=0.44;ABP=3.79203;AC=2;AF=0.333333;AN=6;AO=11;CIGAR=1X;DP=55;DPB=55;DPRA=0.416667;EPP=26.8965;EPPR=98.5551;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=1.73472e-18;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=416;QR=1581;RO=44;RPL=11;RPP=26.8965;RPPR=98.5551;RPR=0;RUN=1;SAF=11;SAP=26.8965;SAR=0;SRF=44;SRP=98.5551;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:30:30,0:30:1085:0:0:0,-9.0309,-97.9365 0/1:13:6,7:6:226:7:268:-20.5696,0,-16.7889 0/1:12:8,4:8:270:4:148:-10.0696,0,-21.0151 dDocent_Contig_10921 129 . A G 38.0878 . AB=0.5;ABP=3.0103;AC=1;AF=0.166667;AN=6;AO=2;CIGAR=1X;DP=27;DPB=27;DPRA=0.347826;EPP=7.35324;EPPR=57.2971;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=72;QR=912;RO=25;RPL=0;RPP=7.35324;RPPR=57.2971;RPR=2;RUN=1;SAF=0;SAP=7.35324;SAR=2;SRF=0;SRP=57.2971;SRR=25;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:9:9,0:9:334:0:0:0,-2.70927,-30.4126 0/0:14:14,0:14:502:0:0:0,-4.21442,-45.5132 0/1:4:2,2:2:76:2:72:-5.6326,0,-6.01055 dDocent_Contig_10923 8 . C A 39.8346 . AB=0.108108;ABP=151.081;AC=3;AF=0.5;AN=6;AO=12;CIGAR=1X;DP=111;DPB=111;DPRA=0;EPP=29.068;EPPR=217.986;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=0.833333;PAIREDR=0.989899;PAO=0;PQA=0;PQR=0;PRO=0;QA=439;QR=3821;RO=99;RPL=0;RPP=29.068;RPPR=217.986;RPR=12;RUN=1;SAF=12;SAP=29.068;SAR=0;SRF=99;SRP=217.986;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:44:40,4:40:1554:4:152:-0.804309,0,-126.883 0/1:17:14,3:14:521:3:117:-5.79287,0,-42.1115 0/1:50:45,5:45:1746:5:170:-0.57765,0,-142.342 dDocent_Contig_10924 11 . T C 109.668 . AB=0.153846;ABP=30.0702;AC=1;AF=0.166667;AN=6;AO=4;CIGAR=6M1X4M1X;DP=36;DPB=36;DPRA=0;EPP=11.6962;EPPR=48.6112;GTI=0;LEN=1;MEANALT=3;MQM=60;MQMR=60;NS=3;NUMALT=3;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=164;QR=826;RO=21;RPL=0;RPP=11.6962;RPPR=48.6112;RPR=4;RUN=1;SAF=4;SAP=11.6962;SAR=0;SRF=21;SRP=48.6112;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|0:20:14,0,2,3:14:548:0,2,3:0,82,117:-5.39661,-9.61103,-54.6669,-2.83627,-47.8969,-47.2948,0,-45.0498,-38.2795,-44.1467 0|1:6:2,0,2,0:2:80:0,2,0:0,82,0:-6.18595,-6.78801,-13.3815,0,-6.60507,-6.00301,-6.78801,-13.3815,-6.60507,-13.3815 0|0:10:5,2,0,0:5:198:2,0,0:78,0,0:-4.90661,0,-15.6987,-6.41176,-16.3007,-22.7117,-6.41176,-16.3007,-22.7117,-22.7117 dDocent_Contig_10925 7 . C T 5934.91 . AB=0.0408163;ABP=361.968;AC=0;AF=0;AN=6;AO=8;CIGAR=2M1X1M1D6M;DP=262;DPB=240;DPRA=0;EPP=20.3821;EPPR=46.4397;GTI=0;LEN=1;MEANALT=5.5;MQM=55.125;MQMR=60;NS=3;NUMALT=4;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=301;QR=788;RO=20;RPL=0;RPP=20.3821;RPPR=46.4397;RPR=8;RUN=1;SAF=8;SAP=20.3821;SAR=0;SRF=20;SRP=46.4397;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|0:140:10,4,3,12,109:10:394:4,3,12,109:152,118,456,4023:-330.384,-320.943,-352.156,-323.687,-343.653,-355.201,-295.999,-315.965,-318.709,-324.804,-4.97209,-24.9409,-27.6835,0,-4.57857 0|0:56:0,4,6,8,37:0:0:4,6,8,37:149,228,294,1344:-133.754,-121.58,-120.376,-115.054,-102.88,-113.248,-109.719,-97.5447,-91.0186,-107.31,-24.0305,-11.8577,-5.32962,0,-12.8924 0|0:66:10,0,5,7,44:10:394:0,5,7,44:0,198,272,1681:-134.875,-137.885,-170.302,-121.587,-154.004,-152.499,-115.533,-147.95,-131.652,-145.843,0,-32.4162,-16.1184,-10.0663,-19.1709 dDocent_Contig_10926 36 . T G 53.653 . AB=0.666667;ABP=3.73412;AC=1;AF=0.166667;AN=6;AO=2;CIGAR=1X;DP=16;DPB=16;DPRA=0.461538;EPP=7.35324;EPPR=33.4109;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=0;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=82;QR=556;RO=14;RPL=0;RPP=7.35324;RPPR=33.4109;RPR=2;RUN=1;SAF=2;SAP=7.35324;SAR=0;SRF=14;SRP=33.4109;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:3:1,2:1:40:2:82:-6.87659,0,-3.09259 0/0:8:8,0:8:313:0:0:0,-2.40824,-28.5338 0/0:5:5,0:5:203:0:0:0,-1.50515,-18.6531 dDocent_Contig_10927 7 . C T 130.293 . AB=0.181818;ABP=32.0291;AC=1;AF=0.166667;AN=6;AO=6;CIGAR=2M1X4M;DP=60;DPB=58.8571;DPRA=0;EPP=16.0391;EPPR=98.5551;GTI=0;LEN=1;MEANALT=2;MQM=60;MQMR=58.7727;NS=3;NUMALT=2;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=225;QR=1694;RO=44;RPL=0;RPP=16.0391;RPPR=98.5551;RPR=6;RUN=1;SAF=6;SAP=16.0391;SAR=0;SRF=44;SRP=98.5551;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|0:27:22,4,0:22:845:4,0:155,0:-6.10157,0,-68.1455,-12.7242,-69.3496,-82.0842 0|1:12:10,0,2:10:386:0,2:0,74:-3.41352,-6.42382,-38.1383,0,-32.0869,-31.4848 0|0:21:12,4,4:12:463:4,4:153,151:-8.94668,0,-33.8413,-0.183264,-22.665,-34.0218 dDocent_Contig_10929 8 . C A 57.5467 . AB=0.0909091;ABP=19.0002;AC=3;AF=0.5;AN=6;AO=4;CIGAR=1X;DP=25;DPB=25;DPRA=0.636364;EPP=11.6962;EPPR=48.6112;GTI=0;LEN=1;MEANALT=1;MQM=30;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=0.25;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=147;QR=819;RO=21;RPL=0;RPP=11.6962;RPPR=48.6112;RPR=4;RUN=1;SAF=4;SAP=11.6962;SAR=0;SRF=21;SRP=48.6112;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:11:11,0:11:429:0:0:0,-3.31133,-38.9656 1/1:3:0,3:0:0:3:112:-5.57617,-0.90309,0 0/1:11:10,1:10:390:1:35:-0.187299,0,-32.1474 dDocent_Contig_10930 7 . C T 2019.88 . AB=0.75;ABP=52.9542;AC=3;AF=0.5;AN=6;AO=69;CIGAR=1X;DP=92;DPB=92;DPRA=0;EPP=152.842;EPPR=52.9542;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=2603;QR=891;RO=23;RPL=0;RPP=152.842;RPPR=52.9542;RPR=69;RUN=1;SAF=69;SAP=152.842;SAR=0;SRF=23;SRP=52.9542;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:52:8,44:8:309:44:1670:-134.907,0,-12.5194 0/1:8:2,6:2:78:6:217:-17.4682,0,-4.99523 0/1:32:13,19:13:504:19:716:-55.1352,0,-36.0761 dDocent_Contig_10931 83 . T G 1296.23 . AB=0.659091;ABP=12.6832;AC=4;AF=0.666667;AN=6;AO=50;CIGAR=1X;DP=67;DPB=67;DPRA=0;EPP=111.584;EPPR=39.9253;GTI=0;LEN=1;MEANALT=1;MQM=57.84;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=1724;QR=603;RO=17;RPL=50;RPP=111.584;RPPR=39.9253;RPR=0;RUN=1;SAF=50;SAP=111.584;SAR=0;SRF=17;SRP=39.9253;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:25:6,19:6:211:19:657:-49.0189,0,-11.8076 0/1:19:9,10:9:320:10:344:-25.5729,0,-23.4229 1/1:23:2,21:2:72:21:723:-58.5531,-0.0869676,0 dDocent_Contig_10932 181 . G A 74.726 . AB=0.142857;ABP=10.7656;AC=3;AF=0.5;AN=6;AO=4;CIGAR=1X;DP=22;DPB=22;DPRA=0;EPP=11.6962;EPPR=42.0968;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=150;QR=705;RO=18;RPL=4;RPP=11.6962;RPPR=42.0968;RPR=0;RUN=1;SAF=0;SAP=11.6962;SAR=4;SRF=0;SRP=42.0968;SRR=18;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:13:12,1:12:460:1:35:0,-0.414761,-38.2455 1/1:2:0,2:0:0:2:76:-7.21467,-0.60206,0 0/1:7:6,1:6:245:1:39:-1.78935,0,-20.3223 dDocent_Contig_10933 8 . C T 91.766 . AB=0.217391;ABP=18.9659;AC=1;AF=0.166667;AN=6;AO=5;CIGAR=1X;DP=66;DPB=66;DPRA=1.06977;EPP=13.8677;EPPR=135.47;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=195;QR=2335;RO=61;RPL=0;RPP=13.8677;RPPR=135.47;RPR=5;RUN=1;SAF=5;SAP=13.8677;SAR=0;SRF=61;SRP=135.47;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:24:24,0:24:910:0:0:0,-7.22472,-82.2155 0/0:19:19,0:19:724:0:0:0,-5.71957,-65.4895 0/1:23:18,5:18:701:5:195:-11.0005,0,-56.5004 dDocent_Contig_10934 124 . C A 161.271 . AB=0.285714;ABP=16.9698;AC=2;AF=0.333333;AN=6;AO=10;CIGAR=1X;DP=48;DPB=48;DPRA=1.34615;EPP=24.725;EPPR=85.5263;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=47.8947;NS=3;NUMALT=1;ODDS=0;PAIRED=0;PAIREDR=0.526316;PAO=0;PQA=0;PQR=0;PRO=0;QA=325;QR=1128;RO=38;RPL=0;RPP=24.725;RPPR=85.5263;RPR=10;RUN=1;SAF=0;SAP=24.725;SAR=10;SRF=0;SRP=85.5263;SRR=38;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:13:13,0:13:405:0:0:0,-3.91339,-31.5076 0/1:13:11,2:11:324:2:56:-1.40596,0,-25.2123 0/1:22:14,8:14:399:8:269:-17.9156,0,-28.5913 dDocent_Contig_10935 11 . G A 229.942 . AB=0.307692;ABP=15.538;AC=3;AF=0.5;AN=6;AO=12;CIGAR=1X;DP=39;DPB=39;DPRA=0;EPP=29.068;EPPR=61.6401;GTI=0;LEN=1;MEANALT=1;MQM=47.6667;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=0.583333;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=486;QR=1081;RO=27;RPL=0;RPP=29.068;RPPR=61.6401;RPR=12;RUN=1;SAF=12;SAP=29.068;SAR=0;SRF=27;SRP=61.6401;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:19:13,6:13:510:6:244:-15.6686,0,-40.5214 0/1:5:1,4:1:41:4:162:-10.4162,0,-2.58942 0/1:15:13,2:13:530:2:80:-2.33937,0,-43.5312 dDocent_Contig_10936 21 . A T 6640.29 . AB=0.031746;ABP=602.923;AC=0;AF=0;AN=6;AO=10;CIGAR=2X3M1X;DP=315;DPB=315.5;DPRA=0;EPP=24.725;EPPR=42.0968;GTI=0;LEN=1;MEANALT=8;MQM=44;MQMR=51.3889;NS=3;NUMALT=4;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=400;QR=699;RO=18;RPL=0;RPP=24.725;RPPR=42.0968;RPR=10;RUN=1;SAF=10;SAP=24.725;SAR=0;SRF=18;SRP=42.0968;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|0:177:8,20,18,5,116:8:313:20,18,5,116:791,709,203,4683:-389.236,-327.832,-347.545,-354.528,-316.45,-374.843,-375.663,-337.584,-364.28,-399.892,-38.0891,0,-26.7359,-47.8437,-28.9082 0|0:48:5,4,5,3,28:5:198:4,5,3,28:163,192,118,1129:-86.5531,-74.9985,-90.0957,-78.2109,-81.4523,-93.0051,-78.5722,-81.8139,-85.0255,-93.9701,0,-3.24539,-6.48311,-6.82342,-7.88675 0|0:90:5,17,5,2,56:5:188:17,5,2,56:675,197,79,2213:-193.763,-141.182,-147.322,-187.077,-144.248,-196.828,-189.189,-146.36,-192.255,-199.844,-42.8674,0,-45.9406,-48.0375,-37.2598 dDocent_Contig_10937 45 . G A 103.678 . AB=0.444444;ABP=3.25157;AC=1;AF=0.166667;AN=6;AO=4;CIGAR=1X;DP=31;DPB=31;DPRA=0.818182;EPP=11.6962;EPPR=61.6401;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=8.67362e-19;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=158;QR=1086;RO=27;RPL=0;RPP=11.6962;RPPR=61.6401;RPR=4;RUN=1;SAF=4;SAP=11.6962;SAR=0;SRF=27;SRP=61.6401;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:9:5,4:5:204:4:158:-11.8907,0,-16.0348 0/0:8:8,0:8:325:0:0:0,-2.40824,-29.6196 0/0:14:14,0:14:557:0:0:0,-4.21442,-50.4709 dDocent_Contig_10938 122 . T A 322.612 . AB=0.32;ABP=17.0814;AC=3;AF=0.5;AN=6;AO=16;CIGAR=1X;DP=50;DPB=50;DPRA=0;EPP=7.89611;EPPR=74.6689;GTI=0;LEN=1;MEANALT=1.33333;MQM=55.5;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=0;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=579;QR=1067;RO=33;RPL=0;RPP=37.7539;RPPR=74.6689;RPR=16;RUN=1;SAF=11;SAP=7.89611;SAR=5;SRF=0;SRP=74.6689;SRR=33;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:26:20,6:20:656:6:214:-11.184,0,-51.5202 0/1:6:5,1:5:171:1:37:-1.53997,0,-13.9203 0/1:18:8,9:8:240:9:328:-24.5526,0,-16.583 dDocent_Contig_10939 98 . N T 170.299 . AB=0;ABP=0;AC=4;AF=1;AN=4;AO=5;CIGAR=1X;DP=5;DPB=5;DPRA=0;EPP=13.8677;EPPR=0;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=0;NS=2;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=178;QR=0;RO=0;RPL=5;RPP=13.8677;RPPR=0;RPR=0;RUN=1;SAF=5;SAP=13.8677;SAR=0;SRF=0;SRP=0;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 1/1:4:0,4:0:0:4:142:-13.1293,-1.20412,0 ./.:.:.:.:.:.:.:. 1/1:1:0,1:0:0:1:36:-3.59827,-0.30103,0 dDocent_Contig_10940 7 . C T 185.298 . AB=0.142857;ABP=18.5208;AC=1;AF=0.166667;AN=6;AO=2;CIGAR=2M1X3M1X3M1X3M;DP=60;DPB=64.7857;DPRA=0.777778;EPP=7.35324;EPPR=76.8404;GTI=0;LEN=1;MEANALT=4;MQM=60;MQMR=60;NS=3;NUMALT=5;ODDS=0;PAIRED=1;PAIREDR=1;PAO=3.25;PQA=130.5;PQR=211.167;PRO=5.25;QA=79;QR=1339;RO=34;RPL=0;RPP=7.35324;RPPR=76.8404;RPR=2;RUN=1;SAF=2;SAP=7.35324;SAR=0;SRF=34;SRP=76.8404;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|0:28:11,2,4,0,3,7:11:433:2,4,0,3,7:78,155,0,117,263:-18.2426,-15.3694,-50.4028,-8.91429,-38.3689,-43.348,-21.5539,-51.0049,-44.5521,-57.1878,-11.9304,-41.3841,-34.931,-47.5673,-46.6642,0,-29.4576,-23.004,-35.6411,-26.0194,-33.5339 0|1:14:9,0,0,2,1,0:9:353:0,0,2,1,0:0,0,79,39,0:-3.80771,-6.51698,-35.5908,-6.51698,-35.5908,-35.5908,0,-29.0824,-29.0824,-28.4804,-3.30377,-32.3816,-32.3816,-25.8726,-32.0805,-6.51698,-35.5908,-35.5908,-29.0824,-32.3816,-35.5908 0|0:18:14,1,0,0,0,0:14:553:1,0,0,0,0:37,0,0,0,0:0,-1.34335,-46.5737,-4.21442,-46.8747,-49.7446,-4.21442,-46.8747,-49.7446,-49.7446,-4.21442,-46.8747,-49.7446,-49.7446,-49.7446,-4.21442,-46.8747,-49.7446,-49.7446,-49.7446,-49.7446 dDocent_Contig_10941 16 . A G 95.1415 . AB=0.5;ABP=3.0103;AC=1;AF=0.166667;AN=6;AO=5;CIGAR=1X;DP=30;DPB=30;DPRA=1;EPP=13.8677;EPPR=34.3664;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=0;PAIREDR=0.8;PAO=0;PQA=0;PQR=0;PRO=0;QA=156;QR=984;RO=25;RPL=0;RPP=13.8677;RPPR=57.2971;RPR=5;RUN=1;SAF=0;SAP=13.8677;SAR=5;SRF=22;SRP=34.3664;SRR=3;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:8:8,0:8:326:0:0:0,-2.40824,-29.7099 0/0:12:12,0:12:460:0:0:0,-3.61236,-41.7456 0/1:10:5,5:5:198:5:156:-11.3381,0,-15.1855 dDocent_Contig_10942 11 . C A 193.939 . AB=0.205882;ABP=28.557;AC=1;AF=0.166667;AN=6;AO=7;CIGAR=1M1X8M;DP=55;DPB=49.4;DPRA=0.809524;EPP=18.2106;EPPR=92.0407;GTI=0;LEN=1;MEANALT=1.5;MQM=60;MQMR=60;NS=3;NUMALT=2;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=283;QR=1611;RO=41;RPL=0;RPP=18.2106;RPPR=92.0407;RPR=7;RUN=1;SAF=7;SAP=18.2106;SAR=0;SRF=41;SRP=92.0407;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|1:8:5,0,3:5:199:0,3:0,120:-8.77945,-10.2846,-26.6696,0,-16.7838,-15.8807 0|0:21:20,1,0:20:787:1,0:39,0:0,-2.42507,-67.2568,-6.0206,-67.5578,-70.7635 0|0:26:16,6,4:16:625:6,4:231,163:-14.1373,0,-49.5578,-5.49755,-37.9133,-55.6749 dDocent_Contig_10943 13 . C T 40.4443 . AB=0.0645161;ABP=54.0749;AC=1;AF=0.166667;AN=6;AO=4;CIGAR=1X4M;DP=65;DPB=65;DPRA=4.91667;EPP=11.6962;EPPR=116.082;GTI=0;LEN=1;MEANALT=2;MQM=60;MQMR=60;NS=3;NUMALT=2;ODDS=0;PAIRED=1;PAIREDR=0.964286;PAO=0;PQA=0;PQR=0;PRO=0;QA=160;QR=2209;RO=56;RPL=0;RPP=11.6962;RPPR=124.613;RPR=4;RUN=1;SAF=4;SAP=11.6962;SAR=0;SRF=55;SRP=116.082;SRR=1;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|1:31:25,4,2:25:990:4,2:159,79:-5.56702,0,-80.2773,-6.59264,-74.9806,-87.4698 0|0:6:6,0,0:6:233:0,0:0,0:0,-1.80618,-21.339,-1.80618,-21.339,-21.339 0|0:28:25,0,2:25:986:0,2:0,81:0,-7.52575,-88.6393,-0.849884,-81.9594,-81.3574 dDocent_Contig_10946 54 . A T 322.047 . AB=0.411765;ABP=4.1599;AC=4;AF=0.666667;AN=6;AO=11;CIGAR=1X;DP=21;DPB=21;DPRA=0;EPP=26.8965;EPPR=24.725;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=0.818182;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=441;QR=366;RO=10;RPL=11;RPP=26.8965;RPPR=24.725;RPR=0;RUN=1;SAF=11;SAP=26.8965;SAR=0;SRF=10;SRP=24.725;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:8:5,3:5:189:3:122:-8.96425,0,-14.9616 1/1:4:0,4:0:0:4:163:-15.0584,-1.20412,0 0/1:9:5,4:5:177:4:156:-11.7049,0,-13.5603 dDocent_Contig_10947 21 . A G 237.405 . AB=0.357143;ABP=5.49198;AC=3;AF=0.5;AN=6;AO=9;CIGAR=1X;DP=28;DPB=28;DPRA=0;EPP=22.5536;EPPR=44.2683;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=343;QR=757;RO=19;RPL=0;RPP=22.5536;RPPR=44.2683;RPR=9;RUN=1;SAF=9;SAP=22.5536;SAR=0;SRF=19;SRP=44.2683;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:14:9,5:9:359:5:197:-13.8905,0,-28.4582 1/1:3:0,3:0:0:3:122:-11.3725,-0.90309,0 0/0:11:10,1:10:398:1:24:0,-0.911438,-33.7781 dDocent_Contig_10948 35 . T C 187.522 . AB=0.236842;ABP=25.8679;AC=2;AF=0.333333;AN=6;AO=10;CIGAR=1X;DP=53;DPB=53;DPRA=0;EPP=24.725;EPPR=96.3836;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=406;QR=1735;RO=43;RPL=0;RPP=24.725;RPPR=96.3836;RPR=10;RUN=1;SAF=10;SAP=24.725;SAR=0;SRF=43;SRP=96.3836;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:29:22,7:22:893:7:284:-17.2041,0,-71.9464 0/1:9:7,2:7:272:2:82:-5.07041,0,-22.1335 0/0:15:14,1:14:570:1:40:0,-0.519771,-47.6465 dDocent_Contig_10949 12 . A G 459.741 . AB=0.075;ABP=65.7659;AC=0;AF=0;AN=4;AO=3;CIGAR=1X3M2X3M1X1M3X1M1X1M1X2M1X;DP=64;DPB=64;DPRA=0;EPP=9.52472;EPPR=68.1545;GTI=0;LEN=1;MEANALT=5;MQM=41;MQMR=60;NS=2;NUMALT=4;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=116;QR=1156;RO=30;RPL=0;RPP=9.52472;RPPR=68.1545;RPR=3;RUN=1;SAF=3;SAP=9.52472;SAR=0;SRF=30;SRP=68.1545;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|0:40:21,3,2,8,5:21:824:3,2,8,5:116,56,320,199:-19.166,-16.5097,-83.4072,-21.6012,-80.4202,-88.7901,0,-58.8529,-63.9367,-65.4177,-14.6255,-73.4402,-78.5226,-56.9575,-80.9063 .:.:.:.:.:.:.:. 0|0:24:9,0,0,11,4:9:332:0,0,11,4:0,0,437,159:-30.5071,-33.2164,-60.3739,-33.2164,-60.3739,-60.3739,0,-27.2172,-27.2172,-23.9058,-24.8084,-51.9559,-51.9559,-18.8134,-50.7518 dDocent_Contig_10950 40 . A G 132.532 . AB=0.153846;ABP=16.5402;AC=3;AF=0.5;AN=6;AO=5;CIGAR=1X;DP=34;DPB=34;DPRA=0.444444;EPP=13.8677;EPPR=65.983;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=199;QR=1160;RO=29;RPL=0;RPP=13.8677;RPPR=65.983;RPR=5;RUN=1;SAF=5;SAP=13.8677;SAR=0;SRF=29;SRP=65.983;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:18:18,0:18:731:0:0:0,-5.41854,-66.1146 1/1:3:0,3:0:0:3:119:-11.0945,-0.90309,0 0/1:13:11,2:11:429:2:80:-3.6784,0,-35.0455 dDocent_Contig_10953 130 . C A 163.886 . AB=0.4375;ABP=3.55317;AC=1;AF=0.166667;AN=6;AO=7;CIGAR=1X;DP=72;DPB=72;DPRA=0.571429;EPP=18.2106;EPPR=144.156;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=252;QR=2223;RO=65;RPL=0;RPP=18.2106;RPPR=144.156;RPR=7;RUN=1;SAF=0;SAP=18.2106;SAR=7;SRF=0;SRP=144.156;SRR=65;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:50:50,0:50:1705:0:0:0,-15.0515,-153.726 0/0:6:6,0:6:211:0:0:0,-1.80618,-19.3337 0/1:16:9,7:9:307:7:252:-18.2125,0,-23.1436 dDocent_Contig_10954 122 . C T 64.4267 . AB=0.5;ABP=3.0103;AC=1;AF=0.166667;AN=6;AO=3;CIGAR=1X;DP=39;DPB=39;DPRA=0.363636;EPP=9.52472;EPPR=81.1833;GTI=0;LEN=1;MEANALT=1;MQM=47;MQMR=60;NS=3;NUMALT=1;ODDS=8.67362e-19;PAIRED=0;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=109;QR=1256;RO=36;RPL=0;RPP=9.52472;RPPR=81.1833;RPR=3;RUN=1;SAF=0;SAP=9.52472;SAR=3;SRF=0;SRP=81.1833;SRR=36;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:22:22,0:22:775:0:0:0,-6.62266,-70.0721 0/1:6:3,3:3:103:3:109:-8.26658,0,-7.80362 0/0:11:11,0:11:378:0:0:0,-3.31133,-34.3501 dDocent_Contig_10955 87 . T C 131.246 . AB=0.196429;ABP=47.8357;AC=3;AF=0.5;AN=6;AO=11;CIGAR=1X1M1X;DP=56;DPB=56;DPRA=0;EPP=26.8965;EPPR=100.727;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=3.46945e-18;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=382;QR=1570;RO=45;RPL=11;RPP=26.8965;RPPR=100.727;RPR=0;RUN=1;SAF=11;SAP=26.8965;SAR=0;SRF=45;SRP=100.727;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|1:37:30,7:30:1039:7:237:-10.5207,0,-82.6719 0|1:4:2,2:2:73:2:74:-5.82176,0,-5.72718 0|1:15:13,2:13:458:2:71:-2.22661,0,-37.0397 dDocent_Contig_10956 74 . C A 54.7103 . AB=0.375;ABP=4.09604;AC=1;AF=0.166667;AN=6;AO=3;CIGAR=1X;DP=18;DPB=18;DPRA=1.6;EPP=9.52472;EPPR=35.5824;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=8.67362e-19;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=104;QR=526;RO=15;RPL=3;RPP=9.52472;RPPR=35.5824;RPR=0;RUN=1;SAF=3;SAP=9.52472;SAR=0;SRF=15;SRP=35.5824;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:8:8,0:8:282:0:0:0,-2.40824,-25.721 0/1:8:5,3:5:175:3:104:-7.29457,0,-13.6847 0/0:2:2,0:2:69:0:0:0,-0.60206,-6.55254 dDocent_Contig_10957 7 . C A 215.625 . AB=0.25641;ABP=23.1103;AC=1;AF=0.166667;AN=6;AO=11;CIGAR=1X2M1X;DP=78;DPB=78;DPRA=2.75;EPP=26.8965;EPPR=148.499;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=422;QR=2555;RO=67;RPL=0;RPP=26.8965;RPPR=148.499;RPR=11;RUN=1;SAF=11;SAP=26.8965;SAR=0;SRF=67;SRP=148.499;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|1:39:29,10:29:1110:10:383:-23.0854,0,-88.462 0|0:27:26,1:26:988:1:39:0,-4.23125,-85.3363 0|0:12:12,0:12:457:0:0:0,-3.61236,-41.4784 dDocent_Contig_10959 8 . C T 358.635 . AB=0.324324;ABP=12.9286;AC=1;AF=0.166667;AN=6;AO=12;CIGAR=1X3M1X;DP=82;DPB=82;DPRA=1.15625;EPP=29.068;EPPR=139.813;GTI=0;LEN=1;MEANALT=2;MQM=59.4167;MQMR=60;NS=3;NUMALT=2;ODDS=6.93889e-18;PAIRED=0;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=470;QR=2457;RO=63;RPL=0;RPP=29.068;RPPR=139.813;RPR=12;RUN=1;SAF=12;SAP=29.068;SAR=0;SRF=63;SRP=139.813;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|1:37:21,12,4:21:835:12,4:470,163:-32.2982,0,-65.1301,-25.1685,-55.2936,-92.7189 0|0:32:32,0,0:32:1226:0,0:0,0:0,-9.63296,-110.634,-9.63296,-110.634,-110.634 0|0:13:10,0,3:10:396:0,3:0,118:-7.08819,-10.0985,-42.6946,0,-32.9896,-32.0865 dDocent_Contig_10960 191 . C T 601.89 . AB=0.533333;ABP=3.44459;AC=3;AF=0.5;AN=6;AO=24;CIGAR=1X;DP=45;DPB=45;DPRA=0;EPP=55.1256;EPPR=48.6112;GTI=0;LEN=1;MEANALT=1;MQM=40;MQMR=43.5714;NS=3;NUMALT=1;ODDS=3.46945e-18;PAIRED=1;PAIREDR=0.952381;PAO=0;PQA=0;PQR=0;PRO=0;QA=937;QR=847;RO=21;RPL=24;RPP=55.1256;RPPR=48.6112;RPR=0;RUN=1;SAF=0;SAP=55.1256;SAR=24;SRF=0;SRP=48.6112;SRR=21;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:25:11,14:11:448:14:561:-39.4278,0,-31.5173 0/1:12:8,4:8:318:4:146:-9.02583,0,-24.0409 0/1:8:2,6:2:81:6:230:-17.2581,0,-4.95156 dDocent_Contig_10961 15 . C T 86.303 . AB=0.16;ABP=53.2147;AC=2;AF=0.333333;AN=6;AO=8;CIGAR=1X;DP=73;DPB=73;DPRA=1.08696;EPP=20.3821;EPPR=144.156;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=0.875;PAIREDR=0.953846;PAO=0;PQA=0;PQR=0;PRO=0;QA=294;QR=2593;RO=65;RPL=0;RPP=20.3821;RPPR=144.156;RPR=8;RUN=1;SAF=8;SAP=20.3821;SAR=0;SRF=65;SRP=144.156;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:23:23,0:23:904:0:0:0,-6.92369,-81.6582 0/1:16:12,4:12:475:4:154:-9.41657,0,-38.2822 0/1:34:30,4:30:1214:4:140:-2.70922,0,-99.2963 dDocent_Contig_10962 111 . A G 311.967 . AB=0.282828;ABP=43.5664;AC=3;AF=0.5;AN=6;AO=28;CIGAR=1M1X;DP=99;DPB=99;DPRA=0;EPP=63.8115;EPPR=157.185;GTI=0;LEN=1;MEANALT=1;MQM=40.7857;MQMR=46.7606;NS=3;NUMALT=1;ODDS=0;PAIRED=0.535714;PAIREDR=0.676056;PAO=0;PQA=0;PQR=0;PRO=0;QA=896;QR=2400;RO=71;RPL=0;RPP=63.8115;RPPR=157.185;RPR=28;RUN=1;SAF=0;SAP=63.8115;SAR=28;SRF=0;SRP=157.185;SRR=71;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|1:47:31,16:31:1029:16:528:-23.4628,0,-60.6871 0|1:19:14,5:14:479:5:127:-4.92804,0,-31.2763 0|1:33:26,7:26:892:7:241:-8.32855,0,-64.3088 dDocent_Contig_10964 22 . G A 605.726 . AB=0.205479;ABP=113.012;AC=2;AF=0.333333;AN=6;AO=31;CIGAR=1X;DP=161;DPB=161;DPRA=0;EPP=70.3259;EPPR=285.302;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=1231;QR=5122;RO=130;RPL=0;RPP=70.3259;RPPR=285.302;RPR=31;RUN=1;SAF=31;SAP=70.3259;SAR=0;SRF=130;SRP=285.302;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:79:59,20:59:2322:20:791:-47.7253,0,-185.353 0/0:15:14,1:14:540:1:38:0,-0.718181,-45.1377 0/1:67:57,10:57:2260:10:402:-16.37,0,-183.396 dDocent_Contig_10966 7 . C T 3667.71 . AB=0.0506823;ABP=902.588;AC=0;AF=0;AN=6;AO=26;CIGAR=1X4M2X7M1X;DP=513;DPB=512.733;DPRA=0;EPP=59.4686;EPPR=133.299;GTI=0;LEN=1;MEANALT=28.6667;MQM=44.7692;MQMR=60;NS=3;NUMALT=9;ODDS=2.22045e-16;PAIRED=0;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=877;QR=2313;RO=60;RPL=0;RPP=59.4686;RPPR=133.299;RPR=26;RUN=1;SAF=26;SAP=59.4686;SAR=0;SRF=60;SRP=133.299;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|0:181:35,1,7,23,4,2,6,11,27,9:35:1363:1,7,23,4,2,6,11,27,9:40,245,769,157,81,242,409,1044,307:-73.5534,-80.9814,-192.708,-65.5687,-174.489,-175.49,-22.6066,-131.527,-116.115,-127.712,-74.3557,-183.276,-167.863,-124.902,-185.179,-77.4659,-186.386,-170.973,-128.012,-179.76,-188.892,-64.1471,-173.068,-157.655,-114.694,-166.442,-169.552,-174.37,-52.9237,-161.844,-146.432,-103.47,-155.219,-158.329,-145.011,-161.641,0,-108.923,-93.5109,-50.5492,-102.298,-105.408,-92.0895,-80.866,-103.904,-59.1859,-168.106,-152.694,-109.733,-161.481,-164.591,-151.273,-140.049,-87.1282,-168.505 0|0:152:1,0,0,1,9,12,12,0,49,10:1:40:0,0,1,9,12,12,0,49,10:0,0,39,356,470,464,0,1841,389:-182.609,-182.91,-186.206,-182.91,-186.206,-186.206,-179.809,-183.104,-183.104,-182.803,-161.314,-164.61,-164.61,-161.508,-161.901,-144.883,-148.178,-148.178,-145.077,-126.582,-144.566,-144.812,-148.108,-148.108,-145.006,-126.512,-110.08,-144.495,-182.91,-186.206,-186.206,-183.104,-164.61,-148.178,-148.108,-186.206,-34.8058,-38.1015,-38.1015,-34.9995,-16.5059,-0.0706519,0,-38.1015,-23.351,-150.955,-154.251,-154.251,-151.149,-132.655,-116.223,-116.152,-154.251,-6.14353,-151.24 0|0:180:24,13,11,2,3,15,13,1,40,6:24:910:13,11,2,3,15,13,1,40,6:502,418,69,113,583,513,38,1536,228:-116.023,-83.7406,-154.434,-90.0562,-125.156,-161.351,-117.735,-152.834,-159.15,-191.739,-116.03,-151.13,-157.445,-185.124,-189.733,-75.4069,-110.507,-116.822,-144.501,-142.796,-145.498,-81.0447,-116.144,-122.46,-150.139,-148.434,-107.811,-151.738,-120.4,-155.499,-161.815,-189.493,-187.788,-147.166,-152.803,-194.705,0,-35.1,-41.4156,-69.0945,-67.3898,-26.766,-32.4038,-71.759,-62.5658,-104.55,-139.65,-145.965,-173.644,-171.939,-131.316,-136.954,-176.308,-55.9094,-177.35 dDocent_Contig_10969 54 . G T 102.781 . AB=0.3125;ABP=7.89611;AC=2;AF=0.333333;AN=6;AO=5;CIGAR=1X;DP=29;DPB=29;DPRA=0.615385;EPP=13.8677;EPPR=55.1256;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=1.73472e-18;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=194;QR=942;RO=24;RPL=5;RPP=13.8677;RPPR=55.1256;RPR=0;RUN=1;SAF=5;SAP=13.8677;SAR=0;SRF=24;SRP=55.1256;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:13:13,0:13:514:0:0:0,-3.91339,-46.6063 0/1:7:6,1:6:228:1:34:-1.2917,0,-18.7708 0/1:9:5,4:5:200:4:160:-12.0745,0,-15.6703 dDocent_Contig_10970 7 . C A 9854.06 . AB=0.0598086;ABP=706.526;AC=0;AF=0;AN=6;AO=25;CIGAR=1X1M1X2M;DP=418;DPB=418;DPRA=0;EPP=57.2971;EPPR=63.8115;GTI=0;LEN=1;MEANALT=5;MQM=60;MQMR=60;NS=3;NUMALT=4;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=959;QR=1072;RO=28;RPL=0;RPP=57.2971;RPPR=63.8115;RPR=25;RUN=1;SAF=25;SAP=57.2971;SAR=0;SRF=28;SRP=63.8115;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|0:213:8,21,29,5,146:8:307:21,29,5,146:803,1123,186,5581:-522.568,-459.083,-477.961,-432.737,-392.044,-449.207,-509.752,-469.059,-442.713,-533.447,-67.0417,-26.3489,0,-77.0181,-48.2911 0|0:78:6,3,8,5,56:6:231:3,8,5,56:117,306,158,2144:-180.303,-172.491,-190.556,-157,-166.349,-173.559,-170.218,-179.567,-164.076,-187.68,-6.1447,-15.4977,0,-13.2412,-8.26155 0|0:127:14,1,12,0,95:14:534:1,12,0,95:39,454,0,3568:-288.057,-289.066,-332.573,-255.059,-295.661,-295.255,-292.272,-332.874,-298.867,-336.08,0,-40.6021,-6.59724,-43.8083,-15.2105 dDocent_Contig_10971 47 . G A 71.2211 . AB=0.227273;ABP=17.2236;AC=2;AF=0.333333;AN=6;AO=5;CIGAR=1X;DP=211;DPB=211;DPRA=0.0582011;EPP=13.8677;EPPR=416.265;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=0;PAIREDR=0.825243;PAO=0;PQA=0;PQR=0;PRO=0;QA=184;QR=7772;RO=206;RPL=0;RPP=13.8677;RPPR=416.265;RPR=5;RUN=1;SAF=5;SAP=13.8677;SAR=0;SRF=206;SRP=450.334;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:14:11,3:11:437:3:120:-6.97289,0,-35.4682 0/0:189:189,0:189:7101:0:0:0,-56.8947,-638.881 0/1:8:6,2:6:234:2:64:-3.669,0,-19.0196 dDocent_Contig_10972 24 . C T 52.7375 . AB=0.111111;ABP=85.7675;AC=3;AF=0.5;AN=6;AO=7;CIGAR=1M3I1X17M;DP=63;DPB=64.7368;DPRA=0;EPP=18.2106;EPPR=107.241;GTI=0;LEN=1;MEANALT=3.66667;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=281;QR=1861;RO=48;RPL=0;RPP=18.2106;RPPR=107.241;RPR=7;RUN=1;SAF=7;SAP=18.2106;SAR=0;SRF=48;SRP=107.241;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|1:40:33,3:33:1284:3:122:-0.16526,0,-104.675 0|1:10:5,2:5:191:2:79:-4.99251,0,-15.0558 0|1:13:10,2:10:386:2:80:-3.79957,0,-31.3829 dDocent_Contig_10973 7 . C A 54.3704 . AB=0.428571;ABP=3.63072;AC=2;AF=0.333333;AN=6;AO=7;CIGAR=1X;DP=28;DPB=28;DPRA=0;EPP=18.2106;EPPR=48.6112;GTI=0;LEN=1;MEANALT=1;MQM=34.8571;MQMR=60;NS=3;NUMALT=1;ODDS=1.73472e-18;PAIRED=0.428571;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=267;QR=806;RO=21;RPL=0;RPP=18.2106;RPPR=48.6112;RPR=7;RUN=1;SAF=7;SAP=18.2106;SAR=0;SRF=21;SRP=48.6112;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:6:3,3:3:117:3:114:-2.66623,0,-9.1042 0/1:8:5,3:5:195:3:114:-6.26288,0,-15.516 0/0:14:13,1:13:494:1:39:0,-0.317855,-40.9065 dDocent_Contig_10974 12 . T C 101.824 . AB=0.121212;ABP=126.389;AC=3;AF=0.5;AN=6;AO=12;CIGAR=2X;DP=99;DPB=99;DPRA=0;EPP=29.068;EPPR=189.757;GTI=0;LEN=1;MEANALT=1.33333;MQM=60;MQMR=59.8953;NS=3;NUMALT=1;ODDS=0;PAIRED=0.416667;PAIREDR=0.604651;PAO=0;PQA=0;PQR=0;PRO=0;QA=474;QR=3386;RO=86;RPL=0;RPP=29.068;RPPR=189.757;RPR=12;RUN=1;SAF=12;SAP=29.068;SAR=0;SRF=86;SRP=189.757;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|1:44:38,5:38:1497:5:205:-5.48126,0,-121.619 0|1:24:22,2:22:854:2:78:-0.178581,0,-69.9492 0|1:31:26,5:26:1035:5:191:-8.22181,0,-84.0931 dDocent_Contig_10975 39 . C T 84.0034 . AB=0.172414;ABP=30.0414;AC=1;AF=0.166667;AN=6;AO=5;CIGAR=1X;DP=42;DPB=42;DPRA=4.46154;EPP=13.8677;EPPR=83.3548;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=1.73472e-18;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=203;QR=1487;RO=37;RPL=0;RPP=13.8677;RPPR=83.3548;RPR=5;RUN=1;SAF=5;SAP=13.8677;SAR=0;SRF=37;SRP=83.3548;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:29:24,5:24:962:5:203:-9.92319,0,-78.1497 0/0:7:7,0:7:280:0:0:0,-2.10721,-25.5713 0/0:6:6,0:6:245:0:0:0,-1.80618,-22.4295 dDocent_Contig_10976 8 . C T 155.985 . AB=0.209302;ABP=34.5724;AC=2;AF=0.333333;AN=6;AO=10;CIGAR=1X;DP=73;DPB=73;DPRA=0;EPP=24.725;EPPR=139.813;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=3.46945e-18;PAIRED=0;PAIREDR=0.952381;PAO=0;PQA=0;PQR=0;PRO=0;QA=387;QR=2375;RO=63;RPL=0;RPP=24.725;RPPR=139.813;RPR=10;RUN=1;SAF=10;SAP=24.725;SAR=0;SRF=63;SRP=139.813;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:30:29,1:29:1099:1:39:0,-5.13434,-95.3168 0/1:12:10,2:10:374:2:76:-3.60245,0,-30.3962 0/1:31:24,7:24:902:7:272:-15.5153,0,-72.1595 dDocent_Contig_10977 8 . C T 575.801 . AB=0.238532;ABP=67.7361;AC=3;AF=0.5;AN=6;AO=26;CIGAR=1X4M;DP=109;DPB=109;DPRA=0;EPP=59.4686;EPPR=170.214;GTI=0;LEN=1;MEANALT=2.33333;MQM=60;MQMR=59.1948;NS=3;NUMALT=2;ODDS=6.93889e-18;PAIRED=1;PAIREDR=0.974026;PAO=0;PQA=0;PQR=0;PRO=0;QA=1006;QR=3015;RO=77;RPL=0;RPP=59.4686;RPPR=170.214;RPR=26;RUN=1;SAF=26;SAP=59.4686;SAR=0;SRF=77;SRP=170.214;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|1:48:38,0,10:38:1487:0,10:0,386:-20.6476,-32.0867,-152.401,0,-120.7,-117.689 0|1:8:5,2,1:5:195:2,1:78,39:-4.90644,0,-15.4269,-3.20571,-12.823,-18.9336 0|1:53:34,1,15:34:1333:1,15:40,581:-37.5487,-44.4871,-153.821,0,-106.39,-105.17 dDocent_Contig_10979 8 . C A 1110.3 . AB=0.260417;ABP=98.736;AC=3;AF=0.5;AN=6;AO=50;CIGAR=1X;DP=192;DPB=192;DPRA=0;EPP=111.584;EPPR=311.359;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=1926;QR=5479;RO=142;RPL=0;RPP=111.584;RPPR=311.359;RPR=50;RUN=1;SAF=50;SAP=111.584;SAR=0;SRF=142;SRP=311.359;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:126:98,28:98:3784:28:1079:-59.4852,0,-302.729 0/1:19:11,8:11:416:8:307:-22.2712,0,-32.0683 0/1:47:33,14:33:1279:14:540:-34.7967,0,-101.251 dDocent_Contig_10980 48 . C A 55.3759 . AB=0.159091;ABP=47.4268;AC=2;AF=0.333333;AN=6;AO=10;CIGAR=1X;DP=122;DPB=122;DPRA=0;EPP=24.725;EPPR=246.215;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=352;QR=4455;RO=112;RPL=0;RPP=24.725;RPPR=246.215;RPR=10;RUN=1;SAF=10;SAP=24.725;SAR=0;SRF=112;SRP=246.215;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:78:75,3:75:2972:3:113:0,-12.9434,-257.042 0/1:8:7,1:7:282:1:41:-1.68633,0,-23.3438 0/1:36:30,6:30:1201:6:198:-7.29633,0,-97.528 dDocent_Contig_10981 39 . C G 46.5775 . AB=0.5;ABP=3.0103;AC=1;AF=0.166667;AN=6;AO=2;CIGAR=1X;DP=17;DPB=17;DPRA=0.615385;EPP=7.35324;EPPR=35.5824;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=81;QR=598;RO=15;RPL=0;RPP=7.35324;RPPR=35.5824;RPR=2;RUN=1;SAF=2;SAP=7.35324;SAR=0;SRF=15;SRP=35.5824;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:6:6,0:6:245:0:0:0,-1.80618,-22.4295 0/0:7:7,0:7:272:0:0:0,-2.10721,-24.8462 0/1:4:2,2:2:81:2:81:-6.48161,0,-6.48161 dDocent_Contig_10982 11 . T C 1204.56 . AB=0.127717;ABP=446.014;AC=1;AF=0.166667;AN=6;AO=47;CIGAR=6M1X5M1X1M1X;DP=368;DPB=368;DPRA=0;EPP=105.07;EPPR=228.843;GTI=0;LEN=1;MEANALT=15.3333;MQM=40.383;MQMR=60;NS=3;NUMALT=7;ODDS=0;PAIRED=1;PAIREDR=0.971154;PAO=0;PQA=0;PQR=0;PRO=0;QA=1603;QR=4065;RO=104;RPL=0;RPP=105.07;RPPR=228.843;RPR=47;RUN=1;SAF=47;SAP=105.07;SAR=0;SRF=104;SRP=228.843;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|0:223:60,0,11,28,12,37,32,17:60:2350:0,11,28,12,37,32,17:0,400,625,471,1225,1282,671:-87.5659,-105.628,-298.883,-72.9585,-266.215,-262.904,-61.7869,-255.036,-222.37,-246.607,-66.888,-260.145,-227.477,-216.3,-256.533,-12.6481,-205.905,-173.237,-162.064,-167.167,-194.766,0,-193.263,-160.595,-149.419,-154.525,-100.284,-183.63,-50.4454,-243.704,-211.036,-199.859,-204.966,-150.726,-138.083,-238.586 0|1:20:4,2,4,1,0,1,2,3:4:154:2,4,1,0,1,2,3:74,145,27,0,33,81,121:-10.6321,-5.798,-17.8433,0,-6.60961,-11.4429,-9.71554,-16.3241,-10.5267,-22.0603,-11.8362,-18.4453,-12.647,-22.3613,-24.4833,-9.1749,-15.7839,-9.98608,-19.7001,-21.8215,-21.5205,-5.15231,-11.7624,-5.96392,-15.6793,-17.8007,-15.1391,-17.1987,-1.90673,-8.51742,-2.71883,-12.4347,-14.5559,-11.8943,-7.87206,-13.6528 0|0:125:40,0,6,23,8,9,12,6:40:1561:0,6,23,8,9,12,6:0,197,463,324,345,483,240:-27.7787,-39.8199,-168.162,-24.4456,-152.788,-150.982,-10.5171,-138.843,-123.472,-131.919,-13.0944,-141.441,-126.067,-112.124,-139.033,-12.7491,-141.095,-125.721,-111.779,-114.373,-138.385,0,-128.349,-112.976,-99.0337,-101.627,-101.281,-124.737,-20.2503,-148.595,-133.222,-119.278,-121.874,-121.528,-108.782,-146.789 dDocent_Contig_10983 29 . C A 48.0569 . AB=0.142857;ABP=34.0313;AC=1;AF=0.166667;AN=6;AO=4;CIGAR=1X;DP=128;DPB=128;DPRA=0.56;EPP=11.6962;EPPR=272.273;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=163;QR=4968;RO=124;RPL=0;RPP=11.6962;RPPR=272.273;RPR=4;RUN=1;SAF=4;SAP=11.6962;SAR=0;SRF=124;SRP=272.273;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:86:86,0:86:3472:0:0:0,-25.8886,-312.503 0/0:14:14,0:14:561:0:0:0,-4.21442,-50.8292 0/1:28:24,4:24:935:4:163:-6.62959,0,-76.0182 dDocent_Contig_10984 16 . C T 36.4395 . AB=0.157895;ABP=22.325;AC=1;AF=0.166667;AN=6;AO=3;CIGAR=1X;DP=75;DPB=75;DPRA=0.678571;EPP=9.52472;EPPR=159.356;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=0.875;PAO=0;PQA=0;PQR=0;PRO=0;QA=120;QR=2905;RO=72;RPL=0;RPP=9.52472;RPPR=159.356;RPR=3;RUN=1;SAF=3;SAP=9.52472;SAR=0;SRF=72;SRP=159.356;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:50:50,0:50:2020:0:0:0,-15.0515,-181.983 0/0:6:6,0:6:235:0:0:0,-1.80618,-21.518 0/1:19:16,3:16:650:3:120:-5.46774,0,-53.1129 dDocent_Contig_10985 109 . C A 115.605 . AB=0.555556;ABP=3.25157;AC=1;AF=0.166667;AN=6;AO=5;CIGAR=1X;DP=65;DPB=65;DPRA=0.321429;EPP=13.8677;EPPR=131.127;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=175;QR=2011;RO=59;RPL=0;RPP=13.8677;RPPR=131.127;RPR=5;RUN=1;SAF=0;SAP=13.8677;SAR=5;SRF=0;SRP=131.127;SRR=59;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:33:32,0:32:1111:0:0:0,-9.63296,-99.9401 0/1:9:4,5:4:133:5:175:-13.3844,0,-9.58937 0/0:23:23,0:23:767:0:0:0,-6.92369,-69.3392 dDocent_Contig_10986 26 . T A 3070.83 . AB=0.627451;ABP=24.5973;AC=4;AF=0.666667;AN=6;AO=96;CIGAR=1X2M;DP=153;DPB=153;DPRA=0;EPP=211.472;EPPR=102.898;GTI=0;LEN=1;MEANALT=1.66667;MQM=60;MQMR=60;NS=3;NUMALT=2;ODDS=1.38778e-17;PAIRED=0.9375;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=3806;QR=1839;RO=46;RPL=0;RPP=211.472;RPPR=102.898;RPR=96;RUN=1;SAF=96;SAP=211.472;SAR=0;SRF=46;SRP=102.898;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|1:79:32,0,47:32:1278:0,47:0,1873:-144.98,-154.613,-259.873,0,-105.659,-91.5106 1|1:25:1,5,19:1:40:5,19:196,752:-74.4002,-58.5841,-60.3742,-12.8149,0,-10.3917 0|1:49:13,6,30:13:521:6,30:240,1181:-93.2258,-77.3679,-118.487,0,-23.1533,-33.8925 dDocent_Contig_10987 15 . C T 38.7504 . AB=0.121951;ABP=53.9075;AC=1;AF=0.166667;AN=6;AO=6;CIGAR=1X;DP=80;DPB=80;DPRA=1.16667;EPP=16.0391;EPPR=163.699;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=0.918919;PAO=0;PQA=0;PQR=0;PRO=0;QA=234;QR=2944;RO=74;RPL=0;RPP=16.0391;RPPR=163.699;RPR=6;RUN=1;SAF=6;SAP=16.0391;SAR=0;SRF=74;SRP=163.699;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:41:36,5:36:1443:5:193:-5.39731,0,-117.778 0/0:15:14,1:14:536:1:41:0,-0.420883,-44.4824 0/0:24:24,0:24:965:0:0:0,-7.22472,-87.1509 dDocent_Contig_10991 12 . T G 52.6491 . AB=0.230769;ABP=11.1951;AC=1;AF=0.166667;AN=6;AO=3;CIGAR=1X;DP=55;DPB=55;DPRA=0.619048;EPP=9.52472;EPPR=115.927;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=118;QR=2079;RO=52;RPL=0;RPP=9.52472;RPPR=115.927;RPR=3;RUN=1;SAF=3;SAP=9.52472;SAR=0;SRF=52;SRP=115.927;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:24:24,0:24:965:0:0:0,-7.22472,-87.1508 0/0:18:18,0:18:723:0:0:0,-5.41854,-65.3953 0/1:13:10,3:10:391:3:118:-7.08881,0,-31.6263 dDocent_Contig_10992 142 . C T 497.523 . AB=0.576923;ABP=4.34659;AC=4;AF=0.666667;AN=6;AO=18;CIGAR=1X;DP=29;DPB=29;DPRA=0;EPP=42.0968;EPPR=26.8965;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=1.73472e-18;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=667;QR=437;RO=11;RPL=0;RPP=42.0968;RPPR=26.8965;RPR=18;RUN=1;SAF=0;SAP=42.0968;SAR=18;SRF=0;SRP=26.8965;SRR=11;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:15:5,10:5:197:10:356:-27.8509,0,-13.5906 1/1:3:0,3:0:0:3:113:-10.539,-0.90309,0 0/1:11:6,5:6:240:5:198:-14.8851,0,-18.6643 dDocent_Contig_10993 63 . T G 499.589 . AB=0.580645;ABP=4.76149;AC=2;AF=0.333333;AN=6;AO=18;CIGAR=1X;DP=37;DPB=37;DPRA=2.58333;EPP=42.0968;EPPR=44.2683;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=690;QR=741;RO=19;RPL=18;RPP=42.0968;RPPR=44.2683;RPR=0;RUN=1;SAF=18;SAP=42.0968;SAR=0;SRF=19;SRP=44.2683;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:25:10,15:10:387:15:571:-44.1929,0,-27.6572 0/0:6:6,0:6:238:0:0:0,-1.80618,-21.7933 0/1:6:3,3:3:116:3:119:-9.28883,0,-9.01136 dDocent_Contig_10996 10 . A C 91.9477 . AB=0.263158;ABP=12.2676;AC=2;AF=0.333333;AN=6;AO=5;CIGAR=1X;DP=32;DPB=32;DPRA=0.730769;EPP=13.8677;EPPR=61.6401;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=196;QR=1080;RO=27;RPL=0;RPP=13.8677;RPPR=61.6401;RPR=5;RUN=1;SAF=5;SAP=13.8677;SAR=0;SRF=27;SRP=61.6401;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:13:13,0:13:512:0:0:0,-3.91339,-46.4257 0/1:4:1,3:1:41:3:114:-9.42769,0,-2.89045 0/1:15:13,2:13:527:2:82:-3.26423,0,-43.2611 dDocent_Contig_10997 111 . G T 1137.12 . AB=0.6;ABP=6.05036;AC=4;AF=0.666667;AN=6;AO=43;CIGAR=1X;DP=57;DPB=57;DPRA=0;EPP=96.3836;EPPR=33.4109;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=3.46945e-18;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=1409;QR=481;RO=14;RPL=0;RPP=96.3836;RPPR=33.4109;RPR=43;RUN=1;SAF=0;SAP=96.3836;SAR=43;SRF=0;SRP=33.4109;SRR=14;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:28:9,19:9:308:19:595:-45.4189,0,-19.6237 0/1:7:5,2:5:173:2:70:-4.54019,0,-13.8029 1/1:22:0,22:0:0:22:744:-67.2758,-6.62266,0 dDocent_Contig_10998 107 . N A 515.643 . AB=0;ABP=0;AC=6;AF=1;AN=6;AO=17;CIGAR=1X;DP=17;DPB=17;DPRA=0;EPP=39.9253;EPPR=0;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=0;NS=3;NUMALT=1;ODDS=1.69407e-21;PAIRED=1;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=557;QR=0;RO=0;RPL=0;RPP=39.9253;RPPR=0;RPR=17;RUN=1;SAF=0;SAP=39.9253;SAR=17;SRF=0;SRP=0;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 1/1:11:0,11:0:0:11:368:-33.4446,-3.31133,0 1/1:2:0,2:0:0:2:66:-6.26818,-0.60206,0 1/1:4:0,4:0:0:4:123:-11.3739,-1.20412,0 dDocent_Contig_11000 8 . C T 129.028 . AB=0.169811;ABP=53.2;AC=1;AF=0.166667;AN=6;AO=17;CIGAR=1X;DP=203;DPB=203;DPRA=0;EPP=39.9253;EPPR=406.904;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=648;QR=7143;RO=186;RPL=0;RPP=39.9253;RPPR=406.904;RPR=17;RUN=1;SAF=17;SAP=39.9253;SAR=0;SRF=186;SRP=406.904;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:90:87,3:87:3351:3:117:0,-16.1823,-290.816 0/0:60:55,5:55:2119:5:194:0,-0.228955,-173.104 0/1:53:44,9:44:1673:9:337:-14.7259,0,-134.872 dDocent_Contig_11001 34 . C A 57.9329 . AB=0.190476;ABP=20.4855;AC=2;AF=0.333333;AN=6;AO=4;CIGAR=1M1D1X;DP=22;DPB=20.6667;DPRA=10.5;EPP=11.6962;EPPR=42.0968;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=164;QR=702;RO=18;RPL=0;RPP=11.6962;RPPR=42.0968;RPR=4;RUN=1;SAF=4;SAP=11.6962;SAR=0;SRF=18;SRP=42.0968;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|0:1:1,0:1:41:0:0:0,-0.30103,-4.09457 0|1:8:7,1:7:275:1:41:-1.68633,0,-22.7103 0|1:13:10,3:10:386:3:123:-7.5514,0,-31.1818 dDocent_Contig_11002 201 . G A 342.061 . AB=0.466667;ABP=3.29983;AC=1;AF=0.166667;AN=6;AO=14;CIGAR=1X;DP=85;DPB=85;DPRA=1.09091;EPP=33.4109;EPPR=157.185;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=497;QR=2549;RO=71;RPL=14;RPP=33.4109;RPPR=157.185;RPR=0;RUN=1;SAF=0;SAP=33.4109;SAR=14;SRF=0;SRP=157.185;SRR=71;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:53:53,0:53:1891:0:0:0,-15.9546,-170.457 0/0:2:2,0:2:74:0:0:0,-0.60206,-7.02588 0/1:30:16,14:16:584:14:497:-36.0296,0,-43.8646 dDocent_Contig_11004 12 . A G 736.989 . AB=0.394366;ABP=9.89173;AC=3;AF=0.5;AN=6;AO=28;CIGAR=1X;DP=71;DPB=71;DPRA=0;EPP=63.8115;EPPR=96.3836;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=1105;QR=1692;RO=43;RPL=0;RPP=63.8115;RPPR=96.3836;RPR=28;RUN=1;SAF=28;SAP=63.8115;SAR=0;SRF=43;SRP=96.3836;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:50:35,15:35:1364:15:592:-38.5637,0,-107.955 0/1:6:1,5:1:41:5:198:-16.3903,0,-2.28839 0/1:15:7,8:7:287:8:315:-24.199,0,-21.6898 dDocent_Contig_11005 68 . T C 3490.04 . AB=0.00943396;ABP=224.582;AC=0;AF=0;AN=6;AO=4;CIGAR=1X3M1X;DP=158;DPB=158;DPRA=0;EPP=11.6962;EPPR=61.6401;GTI=0;LEN=1;MEANALT=2;MQM=60;MQMR=60;NS=3;NUMALT=2;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=140;QR=900;RO=27;RPL=4;RPP=11.6962;RPPR=61.6401;RPR=0;RUN=1;SAF=4;SAP=11.6962;SAR=0;SRF=27;SRP=61.6401;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|0:106:14,1,91:14:471:1,91:35,3180:-254.465,-255.831,-293.689,0,-35.2994,-10.7543 0|0:17:10,0,7:10:327:0,7:0,245:-17.2729,-20.2832,-46.6812,0,-26.7384,-24.6312 0|0:35:3,3,29:3:102:3,29:105,1000:-80.7879,-73.1473,-80.5177,-0.460886,-0.181675,0 dDocent_Contig_11006 30 . G A 4597.88 . AB=0.342007;ABP=61.3333;AC=4;AF=0.666666;AN=6;AO=92;CIGAR=1X3M;DP=269;DPB=269;DPRA=0;EPP=202.786;EPPR=148.499;GTI=0;LEN=1;MEANALT=2.33333;MQM=60;MQMR=60;NS=3;NUMALT=2;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=3632;QR=2628;RO=67;RPL=0;RPP=202.786;RPPR=148.499;RPR=92;RUN=1;SAF=92;SAP=202.786;SAR=0;SRF=67;SRP=148.499;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 1|1:157:23,76,53:23:906:76,53:3011,2092:-338.487,-97.5858,-149.242,-173.291,0,-231.87 0|1:42:12,8,22:12:470:8,22:320,878:-68.6956,-45.9481,-82.1834,0,-12.2782,-32.0185 0|1:70:32,21,17:32:1252:21,17:824,662:-58.1283,0,-96.6171,-13.3647,-48.5415,-111.184 dDocent_Contig_11007 8 . C T 206.118 . AB=0.111111;ABP=26.6552;AC=3;AF=0.5;AN=6;AO=8;CIGAR=1X;DP=34;DPB=34;DPRA=1.2;EPP=20.3821;EPPR=59.4686;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=299;QR=998;RO=26;RPL=0;RPP=20.3821;RPPR=59.4686;RPR=8;RUN=1;SAF=8;SAP=20.3821;SAR=0;SRF=26;SRP=59.4686;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:18:16,2:16:614:2:77:-1.8906,0,-50.1804 1/1:6:0,6:0:0:6:222:-20.3357,-1.80618,0 0/0:10:10,0:10:384:0:0:0,-3.0103,-34.9159 dDocent_Contig_11008 8 . C T 443.499 . AB=0.244444;ABP=54.064;AC=3;AF=0.5;AN=6;AO=22;CIGAR=1X;DP=90;DPB=90;DPRA=0;EPP=50.7827;EPPR=150.67;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=59.4706;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=0.941176;PAO=0;PQA=0;PQR=0;PRO=0;QA=843;QR=2611;RO=68;RPL=0;RPP=50.7827;RPPR=150.67;RPR=22;RUN=1;SAF=22;SAP=50.7827;SAR=0;SRF=68;SRP=150.67;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:64:49,15:49:1887:15:571:-32.4646,0,-150.715 0/1:10:7,3:7:264:3:116:-7.8074,0,-21.1097 0/1:16:12,4:12:460:4:156:-9.60081,0,-36.9336 dDocent_Contig_11009 7 . C T 104.33 . AB=0.173913;ABP=45.4956;AC=3;AF=0.5;AN=6;AO=8;CIGAR=2X;DP=46;DPB=46;DPRA=0;EPP=20.3821;EPPR=57.2971;GTI=0;LEN=1;MEANALT=1.66667;MQM=60;MQMR=59.9444;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=0.916667;PAO=0;PQA=0;PQR=0;PRO=0;QA=307;QR=1360;RO=36;RPL=0;RPP=20.3821;RPPR=81.1833;RPR=8;RUN=1;SAF=8;SAP=20.3821;SAR=0;SRF=33;SRP=57.2971;SRR=3;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|1:32:24,6:24:914:6:232:-11.8442,0,-73.1749 0|1:7:6,1:6:219:1:37:-1.59062,0,-17.955 0|1:7:6,1:6:227:1:38:-1.69006,0,-18.6862 dDocent_Contig_11010 40 . T C 120.906 . AB=0.25;ABP=16.0391;AC=2;AF=0.333333;AN=6;AO=6;CIGAR=1X;DP=43;DPB=43;DPRA=0.631579;EPP=16.0391;EPPR=83.3548;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=1.73472e-18;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=245;QR=1471;RO=37;RPL=0;RPP=16.0391;RPPR=83.3548;RPR=6;RUN=1;SAF=6;SAP=16.0391;SAR=0;SRF=37;SRP=83.3548;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:19:19,0:19:766:0:0:0,-5.71957,-69.2601 0/1:8:6,2:6:221:2:82:-5.37144,0,-17.8337 0/1:16:12,4:12:484:4:163:-10.2419,0,-39.0946 dDocent_Contig_11011 9 . G A 1838.27 . AB=0.206522;ABP=347.141;AC=2;AF=0.333333;AN=6;AO=119;CIGAR=1X;DP=728;DPB=728;DPRA=0;EPP=181.856;EPPR=653.129;GTI=0;LEN=1;MEANALT=1;MQM=58.5042;MQMR=58.7176;NS=3;NUMALT=1;ODDS=0;PAIRED=0.731092;PAIREDR=0.571429;PAO=0;PQA=0;PQR=0;PRO=0;QA=4528;QR=22952;RO=609;RPL=0;RPP=261.416;RPPR=1325.44;RPR=119;RUN=1;SAF=109;SAP=181.856;SAR=10;SRF=518;SRP=653.129;SRR=91;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:235:181,54:181:6887:54:2062:-115.003,0,-548.504 0/0:268:244,24:244:9113:24:894:0,-0.00228201,-735.93 0/1:225:184,41:184:6952:41:1572:-72.3451,0,-555.231 dDocent_Contig_11012 11 . A G 2250.46 . AB=0.0389105;ABP=952.189;AC=0;AF=0;AN=6;AO=20;CIGAR=1X3M1X1M;DP=514;DPB=513.667;DPRA=0;EPP=46.4397;EPPR=346.103;GTI=0;LEN=1;MEANALT=16.6667;MQM=45.95;MQMR=57.4747;NS=3;NUMALT=9;ODDS=1.11022e-16;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=786;QR=6174;RO=158;RPL=0;RPP=46.4397;RPPR=346.103;RPR=20;RUN=1;SAF=20;SAP=46.4397;SAR=0;SRF=158;SRP=346.103;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|0:293:84,1,11,106,0,3,1,0,22,19:84:3282:1,11,106,0,3,1,0,22,19:28,428,2732,0,120,40,0,892,768:-159.452,-182.79,-446.661,-151.175,-413.401,-412.037,0,-262.212,-230.6,-232.251,-184.738,-446.962,-415.349,-264.16,-448.91,-180.344,-442.567,-410.954,-259.767,-444.515,-443.612,-181.443,-443.667,-412.053,-260.865,-445.615,-441.22,-445.314,-184.738,-446.962,-415.349,-264.16,-448.91,-444.515,-445.615,-448.91,-112.202,-374.432,-342.818,-191.632,-376.38,-371.985,-373.084,-376.38,-369.757,-121.422,-383.651,-352.037,-200.85,-385.599,-381.204,-382.303,-385.599,-313.068,-379.879 0|0:99:33,5,6,23,5,0,4,5,3,2:33:1292:5,6,23,5,0,4,5,3,2:200,240,581,199,0,154,197,122,81:-29.422,-23.0042,-127.614,-20.6129,-110.381,-124.922,0,-89.7556,-87.3653,-99.1783,-35.9293,-125.689,-123.298,-102.677,-140.531,-39.356,-129.119,-126.728,-106.102,-142.036,-145.467,-26.7609,-116.527,-114.136,-93.511,-129.445,-132.875,-131.671,-23.1424,-112.91,-110.519,-89.8937,-125.827,-129.257,-116.665,-127.752,-29.2974,-119.063,-116.672,-96.0466,-131.98,-135.411,-122.819,-119.201,-134.508,-32.6823,-122.447,-120.056,-99.4303,-135.364,-138.795,-126.203,-122.585,-128.739,-138.193 0|0:122:41,0,3,30,2,7,9,0,6,4:41:1600:0,3,30,2,7,9,0,6,4:0,118,791,76,277,360,0,246,152:-41.6947,-54.0369,-184.319,-45.045,-175.329,-174.425,0,-130.277,-121.288,-121.246,-52.6651,-182.946,-173.956,-128.906,-182.344,-44.2109,-174.491,-165.501,-120.455,-173.119,-172.384,-24.8958,-155.185,-146.194,-101.144,-153.812,-145.358,-152.475,-54.0369,-184.319,-175.329,-130.277,-182.946,-174.491,-155.185,-184.319,-33.7893,-164.076,-155.086,-110.035,-162.703,-154.249,-134.941,-164.076,-162.27,-41.5684,-171.853,-162.863,-117.812,-170.48,-162.026,-142.719,-171.853,-151.61,-170.649 dDocent_Contig_11013 70 . T G 189.704 . AB=0.16;ABP=28.1125;AC=1;AF=0.166667;AN=6;AO=4;CIGAR=1X2M2D5M;DP=75;DPB=72.2;DPRA=0.568182;EPP=11.6962;EPPR=135.47;GTI=0;LEN=1;MEANALT=2;MQM=60;MQMR=60;NS=3;NUMALT=2;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=159;QR=2324;RO=61;RPL=4;RPP=11.6962;RPPR=135.47;RPR=0;RUN=1;SAF=4;SAP=11.6962;SAR=0;SRF=61;SRP=135.47;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|0:44:41,0,3:41:1586:0,3:0,114:0,-12.3422,-142.622,-2.61384,-133.274,-132.371 0|0:6:1,0,5:1:40:0,5:0,183:-15.0187,-15.3198,-18.6205,0,-3.69465,-2.1895 0|1:25:19,4,2:19:698:4,2:159,74:-7.38976,0,-55.8542,-7.0645,-51.0042,-63.4985 dDocent_Contig_11014 8 . C T 101.29 . AB=0.130435;ABP=84.8654;AC=1;AF=0.166667;AN=6;AO=9;CIGAR=3M1X3M;DP=100;DPB=99.4286;DPRA=4.45161;EPP=22.5536;EPPR=191.928;GTI=0;LEN=1;MEANALT=2;MQM=60;MQMR=60;NS=3;NUMALT=2;ODDS=0;PAIRED=1;PAIREDR=0.942529;PAO=0;PQA=0;PQR=0;PRO=0;QA=347;QR=3320;RO=87;RPL=0;RPP=22.5536;RPPR=191.928;RPR=9;RUN=1;SAF=9;SAP=22.5536;SAR=0;SRF=87;SRP=191.928;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|1:69:56,4,9:56:2136:4,9:146,347:-11.6518,-16.588,-190.617,0,-163.325,-172.542 0|0:6:6,0,0:6:224:0,0:0,0:0,-1.80618,-20.5201,-1.80618,-20.5201,-20.5201 0|0:25:25,0,0:25:960:0,0:0,0:0,-7.52575,-86.7149,-7.52575,-86.7149,-86.7149 dDocent_Contig_11015 137 . T A 65.8934 . AB=0.375;ABP=4.09604;AC=3;AF=0.5;AN=6;AO=5;CIGAR=1X;DP=17;DPB=17;DPRA=0.714286;EPP=13.8677;EPPR=29.068;GTI=0;LEN=1;MEANALT=1;MQM=25.6;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=0;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=132;QR=339;RO=12;RPL=0;RPP=13.8677;RPPR=29.068;RPR=5;RUN=1;SAF=0;SAP=13.8677;SAR=5;SRF=0;SRP=29.068;SRR=12;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 1/1:2:0,2:0:0:2:51:-4.33246,-0.60206,0 0/0:7:7,0:7:206:0:0:0,-2.10721,-18.8311 0/1:8:5,3:5:133:3:81:-3.77696,0,-9.82578 dDocent_Contig_11016 10 . G T 31.9109 . AB=0.15;ABP=24.2907;AC=1;AF=0.25;AN=4;AO=3;CIGAR=1X;DP=33;DPB=33;DPRA=1.53846;EPP=9.52472;EPPR=44.7026;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=52.0333;NS=2;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=0.733333;PAO=0;PQA=0;PQR=0;PRO=0;QA=117;QR=1133;RO=30;RPL=0;RPP=9.52472;RPPR=68.1545;RPR=3;RUN=1;SAF=3;SAP=9.52472;SAR=0;SRF=27;SRP=44.7026;SRR=3;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:20:17,3:17:660:3:117:-4.88978,0,-53.6921 ./.:.:.:.:.:.:.:. 0/0:13:13,0:13:473:0:0:0,-3.91339,-34.6208 dDocent_Contig_11017 18 . T C 1214.92 . AB=0.0625;ABP=82.8119;AC=0;AF=0;AN=6;AO=3;CIGAR=2M1D1X3M3X;DP=106;DPB=104.1;DPRA=0;EPP=9.52472;EPPR=89.8692;GTI=0;LEN=1;MEANALT=6;MQM=57;MQMR=60;NS=3;NUMALT=5;ODDS=1.38778e-17;PAIRED=0;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=120;QR=1567;RO=40;RPL=0;RPP=9.52472;RPPR=89.8692;RPR=3;RUN=1;SAF=3;SAP=9.52472;SAR=0;SRF=40;SRP=89.8692;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|0:48:11,0,3,3,7,21:11:423:0,3,3,7,21:0,60,120,262,830:-64.9979,-68.3092,-103.037,-64.6361,-99.3597,-98.4566,-58.4321,-93.1607,-89.4846,-92.2576,-46.8534,-81.5826,-77.908,-71.7062,-79.4754,0,-34.7495,-31.0813,-24.8689,-13.2864,-28.4279 0|0:27:10,2,0,0,0,14:10:400:2,0,0,0,14:62,0,0,0,525:-38.8052,-37.389,-69.7512,-41.8155,-70.3533,-74.7824,-41.8155,-70.3533,-74.7824,-74.7824,-41.8155,-70.3533,-74.7824,-74.7824,-74.7824,0,-28.6032,-33.0218,-33.0218,-33.0218,-28.8074 0|0:31:19,1,0,0,1,10:19:744:1,0,0,1,10:24,0,0,40,367:-23.2118,-27.3549,-88.2491,-28.9313,-88.5501,-90.1335,-28.9313,-88.5501,-90.1335,-90.1335,-25.6314,-85.2543,-86.8375,-86.8375,-86.5365,0,-59.6726,-61.2527,-61.2527,-57.9568,-58.2424 dDocent_Contig_11018 7 . C T 126.066 . AB=0.2;ABP=30.3709;AC=1;AF=0.166667;AN=6;AO=8;CIGAR=1X;DP=77;DPB=77;DPRA=4.3125;EPP=20.3821;EPPR=127.917;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=3.46945e-18;PAIRED=0.125;PAIREDR=0.855072;PAO=0;PQA=0;PQR=0;PRO=0;QA=309;QR=2655;RO=69;RPL=0;RPP=20.3821;RPPR=152.842;RPR=8;RUN=1;SAF=8;SAP=20.3821;SAR=0;SRF=66;SRP=127.917;SRR=3;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:35:28,7:28:1088:7:270:-14.1295,0,-87.688 0/0:8:8,0:8:308:0:0:0,-2.40824,-28.0824 0/0:34:33,1:33:1259:1:39:0,-6.33846,-109.702 dDocent_Contig_11019 69 . A G 66.9767 . AB=0.135135;ABP=88.5781;AC=1;AF=0.166667;AN=6;AO=10;CIGAR=1X;DP=123;DPB=123;DPRA=3.02041;EPP=24.725;EPPR=241.872;GTI=0;LEN=1;MEANALT=2;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=6.93889e-18;PAIRED=1;PAIREDR=0.954545;PAO=0;PQA=0;PQR=0;PRO=0;QA=332;QR=3867;RO=110;RPL=10;RPP=24.725;RPPR=241.872;RPR=0;RUN=1;SAF=10;SAP=24.725;SAR=0;SRF=110;SRP=241.872;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:74:62,10:62:2197:10:332:-8.22055,0,-176.008 0/0:10:10,0:10:359:0:0:0,-3.0103,-32.6529 0/0:39:38,0:38:1311:0:0:0,-11.4391,-117.944 dDocent_Contig_11020 27 . C T 121.331 . AB=0.233333;ABP=21.5402;AC=2;AF=0.333333;AN=6;AO=7;CIGAR=1X;DP=36;DPB=36;DPRA=2.5;EPP=18.2106;EPPR=57.5966;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=0.965517;PAO=0;PQA=0;PQR=0;PRO=0;QA=265;QR=1141;RO=29;RPL=0;RPP=18.2106;RPPR=65.983;RPR=7;RUN=1;SAF=7;SAP=18.2106;SAR=0;SRF=28;SRP=57.5966;SRR=1;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:24:18,6:18:711:6:225:-13.3817,0,-57.0928 0/0:6:6,0:6:242:0:0:0,-1.80618,-22.1573 0/1:6:5,1:5:188:1:40:-2.1895,0,-15.4741 dDocent_Contig_11021 198 . A T 969.987 . AB=0.391753;ABP=12.8827;AC=2;AF=0.333333;AN=6;AO=39;CIGAR=1X;DP=123;DPB=123;DPRA=0;EPP=87.6977;EPPR=185.414;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=1473;QR=3364;RO=84;RPL=39;RPP=87.6977;RPPR=185.414;RPR=0;RUN=1;SAF=0;SAP=87.6977;SAR=39;SRF=0;SRP=185.414;SRR=84;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:67:44,23:44:1772:23:861:-57.6412,0,-139.523 0/1:30:15,15:15:601:15:573:-42.8804,0,-45.3974 0/0:26:25,1:25:991:1:39:0,-3.93022,-85.5867 dDocent_Contig_11022 36 . G A 781.273 . AB=0.426471;ABP=6.20364;AC=3;AF=0.5;AN=6;AO=29;CIGAR=1X;DP=68;DPB=68;DPRA=0;EPP=65.983;EPPR=87.6977;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=1145;QR=1572;RO=39;RPL=0;RPP=65.983;RPPR=87.6977;RPR=29;RUN=1;SAF=29;SAP=65.983;SAR=0;SRF=39;SRP=87.6977;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:50:28,22:28:1130:22:870:-63.5595,0,-86.9309 0/1:5:2,3:2:79:3:119:-9.58986,0,-5.99209 0/1:13:9,4:9:363:4:156:-10.5007,0,-29.1209 dDocent_Contig_11023 38 . C T 54.7774 . AB=0.166667;ABP=31.9633;AC=2;AF=0.333333;AN=6;AO=5;CIGAR=1X;DP=58;DPB=58;DPRA=0.535714;EPP=13.8677;EPPR=118.098;GTI=0;LEN=1;MEANALT=1;MQM=58.2;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=0;PAIREDR=0.886792;PAO=0;PQA=0;PQR=0;PRO=0;QA=191;QR=2096;RO=53;RPL=0;RPP=13.8677;RPPR=118.098;RPR=5;RUN=1;SAF=5;SAP=13.8677;SAR=0;SRF=53;SRP=118.098;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:28:28,0:28:1107:0:0:0,-8.42884,-99.9098 0/1:6:5,1:5:191:1:40:-2.1895,0,-15.7488 0/1:24:20,4:20:798:4:151:-6.72638,0,-64.9136 dDocent_Contig_11024 20 . G A 123.29 . AB=0.0526316;ABP=168.156;AC=3;AF=0.5;AN=6;AO=5;CIGAR=1X4M;DP=185;DPB=185;DPRA=0;EPP=13.8677;EPPR=335.246;GTI=0;LEN=1;MEANALT=2.5;MQM=60;MQMR=58.5163;NS=3;NUMALT=3;ODDS=0;PAIRED=0.6;PAIREDR=0.620915;PAO=0;PQA=0;PQR=0;PRO=0;QA=198;QR=5999;RO=153;RPL=0;RPP=13.8677;RPPR=335.246;RPR=5;RUN=1;SAF=5;SAP=13.8677;SAR=0;SRF=153;SRP=335.246;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|1:90:77,8,0,5:77:3021:8,0,5:316,0,200:-2.27856,0,-245.17,-25.4579,-247.579,-273.044,-8.97826,-231.103,-256.568,-255.063 0|1:51:41,8,2,0:41:1598:8,2,0:316,81,0:-13.3953,0,-128.769,-19.0557,-124.498,-149.644,-25.7375,-131.178,-150.246,-156.926 0|1:44:35,4,3,2:35:1380:4,3,2:153,117,82:-1.99644,0,-112.19,-2.91637,-103.778,-115.414,-5.75893,-106.626,-109.548,-118.562 dDocent_Contig_11025 15 . C A 5187.67 . AB=0.46594;ABP=6.70831;AC=3;AF=0.5;AN=6;AO=171;CIGAR=1X4M;DP=367;DPB=367;DPRA=0;EPP=374.332;EPPR=311.359;GTI=0;LEN=1;MEANALT=4;MQM=60;MQMR=60;NS=3;NUMALT=3;ODDS=0;PAIRED=1;PAIREDR=0.950704;PAO=0;PQA=0;PQR=0;PRO=0;QA=6880;QR=5304;RO=142;RPL=0;RPP=374.332;RPPR=311.359;RPR=171;RUN=1;SAF=171;SAP=374.332;SAR=0;SRF=142;SRP=311.359;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|1:208:93,13,14,75:93:3469:13,14,75:501,551,3020:-220.906,-207.766,-487.832,-203.576,-446.418,-483.341,0,-242.84,-238.65,-261.4 0|1:57:17,0,10,30:17:637:0,10,30:0,387,1208:-94.4547,-99.5722,-151.735,-67.7877,-119.948,-116.938,0,-52.1627,-20.3697,-43.1318 0|1:102:32,2,1,66:32:1198:2,1,66:77,40,2652:-208.93,-212.241,-309.739,-215.268,-307.046,-313.067,0,-91.792,-94.8192,-78.2471 dDocent_Contig_11026 109 . C T 86.3499 . AB=0.181818;ABP=51.3749;AC=2;AF=0.333333;AN=6;AO=12;CIGAR=1X;DP=162;DPB=162;DPRA=0;EPP=29.068;EPPR=328.731;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=3.46945e-18;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=382;QR=5122;RO=150;RPL=0;RPP=29.068;RPPR=328.731;RPR=12;RUN=1;SAF=0;SAP=29.068;SAR=12;SRF=0;SRP=328.731;SRR=150;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:107:105,2:105:3575:2:70:0,-25.5628,-315.32 0/1:15:12,3:12:410:3:104:-5.18764,0,-32.7127 0/1:40:33,7:33:1137:7:208:-6.97013,0,-90.5937 dDocent_Contig_11027 8 . C A 1146.3 . AB=0.0761905;ABP=330.634;AC=1;AF=0.166667;AN=6;AO=16;CIGAR=2X;DP=210;DPB=210;DPRA=0;EPP=37.7539;EPPR=320.045;GTI=0;LEN=1;MEANALT=2;MQM=60;MQMR=60;NS=3;NUMALT=2;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=610;QR=5575;RO=146;RPL=0;RPP=37.7539;RPPR=320.045;RPR=16;RUN=1;SAF=16;SAP=37.7539;SAR=0;SRF=146;SRP=320.045;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|0:96:68,1,27:68:2574:1,27:39,1043:-65.1908,-82.4548,-293.159,0,-207.793,-202.871 0|1:37:25,8,4:25:959:8,4:302,154:-17.2212,0,-76.3059,-12.0998,-66.0693,-89.6156 0|0:77:53,7,17:53:2042:7,17:269,654:-37.7405,-31.6117,-197.181,0,-145.593,-162.559 dDocent_Contig_11028 11 . T A 1781.28 . AB=0.75;ABP=44.2683;AC=3;AF=0.5;AN=6;AO=57;CIGAR=1X;DP=76;DPB=76;DPRA=0;EPP=126.784;EPPR=44.2683;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=2284;QR=759;RO=19;RPL=0;RPP=126.784;RPPR=44.2683;RPR=57;RUN=1;SAF=57;SAP=126.784;SAR=0;SRF=19;SRP=44.2683;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:41:9,32:9:355:32:1279:-103.037,0,-19.9665 0/1:11:4,7:4:161:7:284:-22.6227,0,-11.5639 0/1:24:6,18:6:243:18:721:-57.9914,0,-15.0229 dDocent_Contig_11029 92 . A G 272.669 . AB=0.325;ABP=13.6505;AC=1;AF=0.166667;AN=6;AO=13;CIGAR=1X;DP=53;DPB=53;DPRA=6.15385;EPP=31.2394;EPPR=89.8692;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=450;QR=1362;RO=40;RPL=13;RPP=31.2394;RPPR=89.8692;RPR=0;RUN=1;SAF=13;SAP=31.2394;SAR=0;SRF=40;SRP=89.8692;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:40:27,13:27:912:13:450:-28.7898,0,-70.3476 0/0:6:6,0:6:207:0:0:0,-1.80618,-18.9681 0/0:7:7,0:7:243:0:0:0,-2.10721,-22.2089 dDocent_Contig_11030 18 . C G 541.238 . AB=0.355932;ABP=13.6468;AC=2;AF=0.333333;AN=6;AO=21;CIGAR=1X;DP=65;DPB=65;DPRA=4.91667;EPP=48.6112;EPPR=98.5551;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=0.977273;PAO=0;PQA=0;PQR=0;PRO=0;QA=830;QR=1729;RO=44;RPL=0;RPP=48.6112;RPPR=98.5551;RPR=21;RUN=1;SAF=21;SAP=48.6112;SAR=0;SRF=44;SRP=98.5551;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:43:27,16:27:1049:16:630:-44.0838,0,-81.7446 0/0:6:6,0:6:236:0:0:0,-1.80618,-21.6103 0/1:16:11,5:11:444:5:200:-13.5629,0,-35.4982 dDocent_Contig_11031 46 . A G 300.121 . AB=0.181818;ABP=90.0666;AC=3;AF=0.5;AN=6;AO=18;CIGAR=1X;DP=99;DPB=99;DPRA=0;EPP=42.0968;EPPR=178.9;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=709;QR=3163;RO=81;RPL=0;RPP=42.0968;RPPR=178.9;RPR=18;RUN=1;SAF=18;SAP=42.0968;SAR=0;SRF=81;SRP=178.9;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:59:47,12:47:1834:12:467:-24.618,0,-147.503 0/1:20:16,4:16:629:4:161:-8.85467,0,-50.9216 0/1:20:18,2:18:700:2:81:-1.66513,0,-57.2939 dDocent_Contig_11032 111 . T C 67.2918 . AB=0;ABP=0;AC=2;AF=0.333333;AN=6;AO=2;CIGAR=1X;DP=13;DPB=13;DPRA=0.363636;EPP=7.35324;EPPR=26.8965;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=69;QR=364;RO=11;RPL=0;RPP=7.35324;RPPR=26.8965;RPR=2;RUN=1;SAF=0;SAP=7.35324;SAR=2;SRF=0;SRP=26.8965;SRR=11;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:6:6,0:6:193:0:0:0,-1.80618,-17.6867 0/0:5:5,0:5:171:0:0:0,-1.50515,-15.7266 1/1:2:0,2:0:0:2:69:-6.55266,-0.60206,0 dDocent_Contig_11034 43 . A G 169.297 . AB=0.5;ABP=3.0103;AC=3;AF=0.5;AN=6;AO=6;CIGAR=1X;DP=17;DPB=17;DPRA=0.916667;EPP=16.0391;EPPR=26.8965;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=230;QR=437;RO=11;RPL=0;RPP=16.0391;RPPR=26.8965;RPR=6;RUN=1;SAF=6;SAP=16.0391;SAR=0;SRF=11;SRP=26.8965;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:10:5,5:5:202:5:190:-14.4561,0,-15.5516 1/1:1:0,1:0:0:1:40:-3.99568,-0.30103,0 0/0:6:6,0:6:235:0:0:0,-1.80618,-21.5216 dDocent_Contig_11035 24 . A G 58.267 . AB=0.125;ABP=71.4117;AC=2;AF=0.333333;AN=6;AO=7;CIGAR=1X;DP=60;DPB=60;DPRA=7;EPP=18.2106;EPPR=118.098;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=282;QR=2080;RO=53;RPL=0;RPP=18.2106;RPPR=118.098;RPR=7;RUN=1;SAF=7;SAP=18.2106;SAR=0;SRF=53;SRP=118.098;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:39:34,5:34:1338:5:203:-6.91289,0,-108.931 0/0:4:4,0:4:138:0:0:0,-1.20412,-12.7509 0/1:17:15,2:15:604:2:79:-2.38012,0,-49.5806 dDocent_Contig_11036 40 . C A 89.5518 . AB=0.285714;ABP=8.59409;AC=1;AF=0.166667;AN=6;AO=4;CIGAR=1X;DP=29;DPB=29;DPRA=1.86667;EPP=11.6962;EPPR=57.2971;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=159;QR=1004;RO=25;RPL=0;RPP=11.6962;RPPR=57.2971;RPR=4;RUN=1;SAF=4;SAP=11.6962;SAR=0;SRF=25;SRP=57.2971;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:14:10,4:10:403:4:159:-10.4773,0,-32.4151 0/0:1:1,0:1:41:0:0:0,-0.30103,-4.09457 0/0:14:14,0:14:560:0:0:0,-4.21442,-50.7409 dDocent_Contig_11037 7 . C T 176.462 . AB=0.0833333;ABP=21.1059;AC=3;AF=0.5;AN=6;AO=6;CIGAR=1X1M1X;DP=32;DPB=32;DPRA=0.566667;EPP=16.0391;EPPR=59.4686;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=0;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=229;QR=1003;RO=26;RPL=0;RPP=16.0391;RPPR=59.4686;RPR=6;RUN=1;SAF=6;SAP=16.0391;SAR=0;SRF=26;SRP=59.4686;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|1:12:11,1:11:425:1:39:-0.284205,0,-34.9922 1|1:5:0,5:0:0:5:190:-17.4673,-1.50515,0 0|0:15:15,0:15:578:0:0:0,-4.51545,-52.3631 dDocent_Contig_11038 18 . G A 513.185 . AB=0.6;ABP=3.44459;AC=1;AF=0.166667;AN=6;AO=3;CIGAR=5M2I5M1X6M;DP=77;DPB=82.2353;DPRA=0;EPP=9.52472;EPPR=74.6689;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=4;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=119;QR=1282;RO=33;RPL=0;RPP=9.52472;RPPR=74.6689;RPR=3;RUN=1;SAF=3;SAP=9.52472;SAR=0;SRF=33;SRP=74.6689;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|0:51:21,0,15,0,14:21:814:0,15,0,14:0,532,0,516:-37.0136,-43.3352,-110.223,0,-66.8938,-62.3784,-43.3352,-110.223,-66.8938,-110.223,-1.13156,-68.0317,-24.7059,-68.0317,-63.8172 0|1:5:2,0,0,3,0:2:77:0,0,3,0:0,0,119,0:-9.59024,-10.1923,-16.5098,-10.1923,-16.5098,-16.5098,0,-6.70677,-6.70677,-5.80368,-10.1923,-16.5098,-16.5098,-6.70677,-16.5098 0|0:21:10,4,3,0,4:10:391:4,3,0,4:160,106,0,155:-10.1798,0,-30.954,-4.5691,-23.5326,-35.812,-13.1901,-32.1581,-36.7151,-45.3416,-0.453261,-19.4228,-23.9823,-32.6072,-31.4031 dDocent_Contig_11040 80 . T C 266.234 . AB=0.375;ABP=7.35324;AC=3;AF=0.5;AN=6;AO=12;CIGAR=1X;DP=32;DPB=32;DPRA=0;EPP=29.068;EPPR=46.4397;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=3.46945e-18;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=452;QR=763;RO=20;RPL=12;RPP=29.068;RPPR=46.4397;RPR=0;RUN=1;SAF=12;SAP=29.068;SAR=0;SRF=20;SRP=46.4397;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:15:11,4:11:425:4:155:-9.80999,0,-34.0888 0/1:10:5,5:5:193:5:186:-14.0896,0,-14.7311 0/1:7:4,3:4:145:3:111:-8.24671,0,-11.2984 dDocent_Contig_11041 88 . C G 33.6401 . AB=0.2;ABP=14.7363;AC=1;AF=0.166667;AN=6;AO=3;CIGAR=1X;DP=45;DPB=45;DPRA=1;EPP=9.52472;EPPR=94.2121;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=104;QR=1458;RO=42;RPL=3;RPP=9.52472;RPPR=94.2121;RPR=0;RUN=1;SAF=3;SAP=9.52472;SAR=0;SRF=42;SRP=94.2121;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:26:26,0:26:903:0:0:0,-7.82678,-81.5867 0/0:4:4,0:4:138:0:0:0,-1.20412,-12.7604 0/1:15:12,3:12:417:3:104:-5.18764,0,-33.3479 dDocent_Contig_11042 59 . A G 1095.54 . AB=0.481481;ABP=3.25157;AC=3;AF=0.5;AN=6;AO=39;CIGAR=1X;DP=81;DPB=81;DPRA=0;EPP=87.6977;EPPR=94.2121;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=1538;QR=1672;RO=42;RPL=39;RPP=87.6977;RPPR=94.2121;RPR=0;RUN=1;SAF=39;SAP=87.6977;SAR=0;SRF=42;SRP=94.2121;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:49:25,24:25:1005:24:947:-70.7827,0,-75.9966 0/1:8:4,4:4:155:4:162:-12.5587,0,-11.9152 0/1:24:13,11:13:512:11:429:-31.7356,0,-39.1972 dDocent_Contig_11043 27 . G T 348.46 . AB=0.448276;ABP=3.68421;AC=2;AF=0.333333;AN=6;AO=13;CIGAR=1X;DP=49;DPB=49;DPRA=0.725;EPP=31.2394;EPPR=43.7857;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=56.4444;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=0.861111;PAO=0;PQA=0;PQR=0;PRO=0;QA=515;QR=1347;RO=36;RPL=0;RPP=31.2394;RPPR=81.1833;RPR=13;RUN=1;SAF=13;SAP=31.2394;SAR=0;SRF=31;SRP=43.7857;SRR=5;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:10:2,8:2:71:8:312:-25.4307,0,-3.48313 0/0:20:20,0:20:736:0:0:0,-6.0206,-64.9772 0/1:19:14,5:14:540:5:203:-12.9335,0,-43.2169 dDocent_Contig_11044 46 . T A 192.387 . AB=0.2;ABP=46.0055;AC=3;AF=0.5;AN=6;AO=11;CIGAR=1X;DP=55;DPB=55;DPRA=0;EPP=26.8965;EPPR=98.5551;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=446;QR=1742;RO=44;RPL=0;RPP=26.8965;RPPR=98.5551;RPR=11;RUN=1;SAF=11;SAP=26.8965;SAR=0;SRF=44;SRP=98.5551;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:27:24,3:24:950:3:120:-3.06009,0,-77.6702 0/1:18:15,3:15:603:3:123:-6.04625,0,-49.1906 0/1:10:5,5:5:189:5:203:-15.6428,0,-14.3586 dDocent_Contig_11045 38 . G A 83.5237 . AB=0.266667;ABP=10.1038;AC=1;AF=0.166667;AN=6;AO=5;CIGAR=1X;DP=39;DPB=39;DPRA=1.9375;EPP=13.8677;EPPR=76.8404;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=200;QR=1321;RO=34;RPL=0;RPP=13.8677;RPPR=76.8404;RPR=5;RUN=1;SAF=5;SAP=13.8677;SAR=0;SRF=34;SRP=76.8404;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:8:8,0:8:311:0:0:0,-2.40824,-28.3499 0/0:16:15,1:15:575:1:41:0,-0.721913,-47.9891 0/1:15:11,4:11:435:4:159:-10.176,0,-34.9873 dDocent_Contig_11046 8 . C A 59.8986 . AB=0.375;ABP=4.09604;AC=3;AF=0.5;AN=6;AO=9;CIGAR=1X2M1X2M1X;DP=25;DPB=25;DPRA=0;EPP=22.5536;EPPR=37.7539;GTI=0;LEN=1;MEANALT=1;MQM=12.7778;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=0;PAIREDR=0.9375;PAO=0;PQA=0;PQR=0;PRO=0;QA=349;QR=637;RO=16;RPL=0;RPP=22.5536;RPPR=37.7539;RPR=9;RUN=1;SAF=9;SAP=22.5536;SAR=0;SRF=16;SRP=37.7539;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|0:12:11,1:11:437:1:40:0,-2.31318,-38.3871 1|1:5:0,5:0:0:5:192:-5.78987,-1.50515,0 0|1:8:5,3:5:200:3:117:-1.2287,0,-15.9719 dDocent_Contig_11047 49 . T C 35.4765 . AB=0.25;ABP=7.35324;AC=1;AF=0.166667;AN=6;AO=2;CIGAR=1X;DP=31;DPB=31;DPRA=0.695652;EPP=7.35324;EPPR=65.983;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=82;QR=1097;RO=29;RPL=0;RPP=7.35324;RPPR=65.983;RPR=2;RUN=1;SAF=2;SAP=7.35324;SAR=0;SRF=29;SRP=65.983;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:13:13,0:13:492:0:0:0,-3.91339,-44.6249 0/0:10:10,0:10:377:0:0:0,-3.0103,-34.2814 0/1:8:6,2:6:228:2:82:-5.37144,0,-18.4765 dDocent_Contig_11048 18 . A G 143.97 . AB=0.428571;ABP=3.63072;AC=1;AF=0.25;AN=4;AO=7;CIGAR=1X;DP=42;DPB=42;DPRA=0;EPP=18.2106;EPPR=79.0118;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=2;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=263;QR=1307;RO=35;RPL=0;RPP=18.2106;RPPR=79.0118;RPR=7;RUN=1;SAF=7;SAP=18.2106;SAR=0;SRF=35;SRP=79.0118;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:28:27,1:27:1006:1:38:0,-4.63157,-87.0527 ./.:.:.:.:.:.:.:. 0/1:14:8,6:8:301:6:225:-16.397,0,-23.2327 dDocent_Contig_11049 35 . A G 983.105 . AB=0.772727;ABP=31.4368;AC=2;AF=0.333333;AN=6;AO=35;CIGAR=1X;DP=58;DPB=58;DPRA=0;EPP=79.0118;EPPR=52.9542;GTI=0;LEN=1;MEANALT=1;MQM=45.7143;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=1382;QR=916;RO=23;RPL=0;RPP=79.0118;RPPR=52.9542;RPR=35;RUN=1;SAF=35;SAP=79.0118;SAR=0;SRF=23;SRP=52.9542;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:24:7,17:7:278:17:658:-48.9483,0,-18.1644 0/0:14:13,1:13:517:1:41:0,-0.468302,-43.1313 0/1:20:3,17:3:121:17:683:-52.8845,0,-5.2596 dDocent_Contig_11050 14 . C T 1993.99 . AB=0.104167;ABP=68.3354;AC=0;AF=0;AN=6;AO=5;CIGAR=1X2M1X;DP=90;DPB=90;DPRA=0;EPP=13.8677;EPPR=44.2683;GTI=0;LEN=1;MEANALT=2;MQM=60;MQMR=60;NS=3;NUMALT=3;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=192;QR=749;RO=19;RPL=0;RPP=13.8677;RPPR=44.2683;RPR=5;RUN=1;SAF=5;SAP=13.8677;SAR=0;SRF=19;SRP=44.2683;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|0:48:7,5,36,0:7:273:5,36,0:192,1439,0:-116.427,-102.779,-123.711,0,-6.68779,-11.6051,-118.534,-125.216,-22.4422,-140.972 0|0:15:4,0,9,2:4:159:0,9,2:0,356,81:-28.085,-29.2891,-42.3794,0,-13.0853,-10.376,-22.6083,-35.6991,-6.40365,-35.0971 0|0:27:8,0,19,0:8:317:0,19,0:0,758,0:-60.41,-62.8183,-88.9088,0,-26.4871,-20.7676,-62.8183,-88.9088,-26.4871,-88.9088 dDocent_Contig_11051 32 . G A 560.112 . 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AB=0.287671;ABP=31.5964;AC=3;AF=0.5;AN=6;AO=21;CIGAR=1X;DP=73;DPB=73;DPRA=0;EPP=48.6112;EPPR=115.927;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=0.428571;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=783;QR=1992;RO=52;RPL=21;RPP=48.6112;RPPR=115.927;RPR=0;RUN=1;SAF=21;SAP=48.6112;SAR=0;SRF=52;SRP=115.927;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:31:23,8:23:885:8:307:-18.6574,0,-70.6366 0/1:29:20,9:20:776:9:328:-21.1341,0,-61.4382 0/1:13:9,4:9:331:4:148:-9.76858,0,-26.227 dDocent_Contig_11055 14 . T C 134.367 . AB=0.163265;ABP=51.2702;AC=1;AF=0.166667;AN=6;AO=10;CIGAR=1X;DP=86;DPB=86;DPRA=4.875;EPP=24.725;EPPR=168.042;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=3.46945e-18;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=408;QR=3055;RO=76;RPL=0;RPP=24.725;RPPR=168.042;RPR=10;RUN=1;SAF=10;SAP=24.725;SAR=0;SRF=76;SRP=168.042;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:49:41,8:41:1648:8:326:-14.9594,0,-133.796 0/0:8:8,0:8:324:0:0:0,-2.40824,-29.5292 0/0:29:27,2:27:1083:2:82:0,-0.950192,-89.9769 dDocent_Contig_11056 95 . T G 533.203 . AB=0.304348;ABP=25.9524;AC=4;AF=0.666667;AN=6;AO=24;CIGAR=1X;DP=72;DPB=72;DPRA=0;EPP=55.1256;EPPR=107.241;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=3.46945e-18;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=851;QR=1652;RO=48;RPL=24;RPP=55.1256;RPPR=107.241;RPR=0;RUN=1;SAF=24;SAP=55.1256;SAR=0;SRF=48;SRP=107.241;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:55:38,17:38:1311:17:606:-38.3148,0,-101.731 1/1:3:0,3:0:0:3:108:-10.0752,-0.90309,0 0/1:14:10,4:10:341:4:137:-8.45297,0,-26.8048 dDocent_Contig_11057 9 . C T 867.283 . AB=0.333333;ABP=29.7918;AC=3;AF=0.5;AN=6;AO=37;CIGAR=1X;DP=111;DPB=111;DPRA=0;EPP=83.3548;EPPR=163.699;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=56.1081;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=0.702703;PAO=0;PQA=0;PQR=0;PRO=0;QA=1385;QR=2854;RO=74;RPL=0;RPP=83.3548;RPPR=163.699;RPR=37;RUN=1;SAF=37;SAP=83.3548;SAR=0;SRF=74;SRP=163.699;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:53:34,19:34:1316:19:726:-49.7165,0,-95.4658 0/1:25:15,10:15:571:10:381:-27.1167,0,-44.2023 0/1:33:25,8:25:967:8:278:-15.418,0,-70.094 dDocent_Contig_11058 9 . C T 88.753 . AB=0.0963855;ABP=237.896;AC=2;AF=0.333333;AN=6;AO=18;CIGAR=2M1X4M;DP=247;DPB=254.714;DPRA=0;EPP=42.0968;EPPR=376.553;GTI=0;LEN=1;MEANALT=6.66667;MQM=47.5556;MQMR=49.6648;NS=3;NUMALT=2;ODDS=0;PAIRED=1;PAIREDR=0.988636;PAO=0;PQA=0;PQR=0;PRO=0;QA=709;QR=6848;RO=176;RPL=0;RPP=42.0968;RPPR=385.189;RPR=18;RUN=1;SAF=18;SAP=42.0968;SAR=0;SRF=175;SRP=376.553;SRR=1;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|1:132:99,1,11:99:3855:1,11:38,439:-5.1519,-31.9226,-338.905,0,-304.257,-303.977 0|1:34:26,2,5:26:1014:2,5:73,188:-7.24617,-9.25264,-90.3738,0,-75.909,-80.2254 0|0:81:51,0,2:51:1979:0,2:0,82:0,-15.3525,-174.204,-8.88968,-167.743,-167.141 dDocent_Contig_11060 8 . C T 281.525 . AB=0.145161;ABP=70.8163;AC=2;AF=0.333333;AN=6;AO=9;CIGAR=2X2M1X3M;DP=79;DPB=79;DPRA=0;EPP=22.5536;EPPR=83.3548;GTI=0;LEN=1;MEANALT=5;MQM=60;MQMR=60;NS=3;NUMALT=8;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=347;QR=1419;RO=37;RPL=0;RPP=22.5536;RPPR=83.3548;RPR=9;RUN=1;SAF=9;SAP=22.5536;SAR=0;SRF=37;SRP=83.3548;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|1:37:20,0,0,4,0,4,0,4,4:20:766:0,0,4,0,4,0,4,4:0,0,143,0,157,0,158,158:-6.99587,-13.0165,-75.889,-13.0165,-75.889,-75.889,-6.40481,-69.2556,-69.2556,-68.0515,-13.0165,-75.889,-75.889,-69.2556,-75.889,-0.754543,-63.6344,-63.6344,-57.0033,-63.6344,-62.4303,-13.0165,-75.889,-75.889,-69.2556,-75.889,-63.6344,-75.889,0,-62.8837,-62.8837,-56.2523,-62.8837,-50.6284,-62.8837,-61.6796,-0.0951067,-62.9783,-62.9783,-56.347,-62.9783,-50.7231,-62.9783,-49.9721,-61.7742 0|1:25:13,1,0,0,0,0,4,5,1:13:503:1,0,0,0,0,4,5,1:40,0,0,0,0,158,189,40:-11.5732,-12.1902,-53.2072,-15.4866,-53.5083,-56.8039,-15.4866,-53.5083,-56.8039,-56.8039,-15.4866,-53.5083,-56.8039,-56.8039,-56.8039,-15.4866,-53.5083,-56.8039,-56.8039,-56.8039,-56.8039,-2.52296,-40.547,-43.8429,-43.8429,-43.8429,-43.8429,-42.6387,0,-38.0182,-41.3139,-41.3139,-41.3139,-41.3139,-28.3529,-39.8087,-12.1961,-50.2184,-53.5141,-53.5141,-53.5141,-53.5141,-40.5529,-38.024,-53.2131 0|0:17:4,2,2,0,2,0,0,0,5:4:150:2,2,0,2,0,0,0,5:77,80,0,80,0,0,0,201:-14.9833,-9.86584,-21.5459,-9.97374,-15.9335,-21.6535,-16.1875,-22.148,-22.2556,-28.4702,-9.59536,-15.5557,-15.6634,-21.8782,-21.2762,-16.1875,-22.148,-22.2556,-28.4702,-21.8782,-28.4702,-16.1875,-22.148,-22.2556,-28.4702,-21.8782,-28.4702,-28.4702,-16.1875,-22.148,-22.2556,-28.4702,-21.8782,-28.4702,-28.4702,-28.4702,0,-5.95942,-6.06742,-12.2823,-5.68867,-12.2823,-12.2823,-12.2823,-10.7771 dDocent_Contig_11061 9 . C A 630.554 . 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C T 296.566 . AB=0.412698;ABP=7.18091;AC=2;AF=0.333333;AN=6;AO=27;CIGAR=2X1M1X6M1D1X;DP=81;DPB=78.5;DPRA=0;EPP=61.6401;EPPR=109.412;GTI=0;LEN=1;MEANALT=2.33333;MQM=24.8889;MQMR=60;NS=3;NUMALT=2;ODDS=0;PAIRED=0;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=672;QR=1904;RO=49;RPL=0;RPP=61.6401;RPPR=109.412;RPR=27;RUN=1;SAF=27;SAP=61.6401;SAR=0;SRF=49;SRP=109.412;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|1:53:30,0,23:30:1175:0,23:0,585:-30.7044,-39.7353,-136.449,0,-97.0106,-90.0869 0|1:10:4,0,3:4:147:0,3:0,60:-2.42285,-3.62697,-15.6979,0,-12.0579,-11.1548 0|0:18:15,2,1:15:582:2,1:80,27:0,-0.277038,-47.6323,-2.66633,-46.3852,-50.2899 dDocent_Contig_11063 165 . A G 459.446 . AB=0.391304;ABP=7.73089;AC=3;AF=0.5;AN=6;AO=18;CIGAR=1X2M;DP=46;DPB=46;DPRA=0;EPP=42.0968;EPPR=59.4686;GTI=0;LEN=1;MEANALT=1.33333;MQM=60;MQMR=60;NS=3;NUMALT=2;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=710;QR=1017;RO=26;RPL=18;RPP=42.0968;RPPR=59.4686;RPR=0;RUN=1;SAF=0;SAP=42.0968;SAR=18;SRF=0;SRP=59.4686;SRR=26;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|1:14:4,0,10:4:148:0,10:0,388:-31.0515,-32.2556,-44.3556,0,-12.4747,-9.46445 0|1:14:9,2,3:9:354:2,3:67,122:-7.45487,-6.54946,-35.057,0,-25.5925,-28.3432 0|1:18:13,0,5:13:515:0,5:0,200:-12.9612,-16.8746,-59.2608,0,-42.7848,-41.2796 dDocent_Contig_11064 11 . T C 93.9302 . AB=0.181818;ABP=32.0291;AC=3;AF=0.5;AN=6;AO=6;CIGAR=1X;DP=33;DPB=33;DPRA=0;EPP=16.0391;EPPR=61.6401;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=245;QR=1093;RO=27;RPL=0;RPP=16.0391;RPPR=61.6401;RPR=6;RUN=1;SAF=6;SAP=16.0391;SAR=0;SRF=27;SRP=61.6401;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:17:15,2:15:612:2:82:-2.66217,0,-50.2996 0/1:4:1,3:1:36:3:122:-10.1684,0,-2.39415 0/1:12:11,1:11:445:1:41:-0.482207,0,-36.7933 dDocent_Contig_11067 16 . G A 548.914 . AB=0.1375;ABP=185.631;AC=1;AF=0.166667;AN=6;AO=22;CIGAR=2X;DP=160;DPB=160;DPRA=0;EPP=50.7827;EPPR=248.387;GTI=0;LEN=1;MEANALT=2;MQM=60;MQMR=60;NS=3;NUMALT=2;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=869;QR=4425;RO=113;RPL=0;RPP=50.7827;RPPR=248.387;RPR=22;RUN=1;SAF=22;SAP=50.7827;SAR=0;SRF=113;SRP=248.387;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|0:59:43,6,10:43:1696:6,10:235,364:-16.77,-10.3807,-148.133,0,-120.214,-136.526 0|1:49:33,11,5:33:1282:11,5:439,184:-26.2428,0,-102.034,-21.1416,-90.3028,-124.956 0|0:52:37,5,10:37:1447:5,10:195,351:-17.4015,-12.4984,-129.984,0,-102.932,-115.95 dDocent_Contig_11068 7 . C T 754.67 . AB=0.0566038;ABP=93.5156;AC=0;AF=0;AN=6;AO=3;CIGAR=2M1X10M;DP=129;DPB=126.231;DPRA=0;EPP=9.52472;EPPR=139.943;GTI=0;LEN=1;MEANALT=5;MQM=60;MQMR=57.7164;NS=3;NUMALT=4;ODDS=0;PAIRED=0;PAIREDR=0.746269;PAO=0;PQA=0;PQR=0;PRO=0;QA=102;QR=2613;RO=67;RPL=0;RPP=9.52472;RPPR=148.499;RPR=3;RUN=1;SAF=3;SAP=9.52472;SAR=0;SRF=66;SRP=139.943;SRR=1;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|0:50:32,3,6,0,6:32:1244:3,6,0,6:87,226,0,246:-10.6931,-14.2325,-115.48,-2.34516,-98.4055,-102.705,-20.3261,-116.383,-104.511,-122.49,0,-96.0756,-84.2027,-102.182,-100.376 0|0:26:12,0,13,0,1:12:469:0,13,0,1:0,458,0,38:-32.8261,-36.4384,-73.9805,0,-37.5278,-33.6144,-36.4384,-73.9805,-37.5278,-73.9805,-33.3195,-70.8633,-34.4114,-70.8633,-70.5623 0|0:53:23,0,15,3,10:23:900:0,15,3,10:0,557,102,396:-37.47,-44.3937,-118.276,0,-73.8874,-69.3719,-36.1249,-110.007,-65.6195,-109.104,-11.787,-85.6812,-41.2916,-77.4122,-82.6709 dDocent_Contig_11069 118 . G A 88.4088 . AB=0.191489;ABP=41.8658;AC=3;AF=0.5;AN=6;AO=9;CIGAR=1X;DP=47;DPB=47;DPRA=0;EPP=22.5536;EPPR=85.5263;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=58.1053;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=305;QR=1268;RO=38;RPL=0;RPP=22.5536;RPPR=85.5263;RPR=9;RUN=1;SAF=0;SAP=22.5536;SAR=9;SRF=0;SRP=85.5263;SRR=38;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:26:22,4:22:720:4:135:-4.65667,0,-57.2592 0/1:7:4,3:4:134:3:100:-7.22345,0,-10.1926 0/1:14:12,2:12:414:2:70:-2.43298,0,-33.3201 dDocent_Contig_11070 47 . A C 325.277 . AB=0.371429;ABP=8.03571;AC=3;AF=0.5;AN=6;AO=13;CIGAR=1X;DP=35;DPB=35;DPRA=0;EPP=31.2394;EPPR=50.7827;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=0.909091;PAO=0;PQA=0;PQR=0;PRO=0;QA=527;QR=891;RO=22;RPL=0;RPP=31.2394;RPPR=50.7827;RPR=13;RUN=1;SAF=13;SAP=31.2394;SAR=0;SRF=22;SRP=50.7827;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:14:11,3:11:442:3:122:-7.15807,0,-35.9212 0/1:14:8,6:8:327:6:244:-18.1244,0,-25.5857 0/1:7:3,4:3:122:4:161:-12.7681,0,-9.26528 dDocent_Contig_11071 8 . C T 55.393 . AB=0.175;ABP=39.7082;AC=0;AF=0;AN=6;AO=7;CIGAR=1X1M1X;DP=40;DPB=40;DPRA=0;EPP=18.2106;EPPR=61.6401;GTI=0;LEN=1;MEANALT=2;MQM=26;MQMR=60;NS=3;NUMALT=3;ODDS=0;PAIRED=0;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=266;QR=1044;RO=27;RPL=0;RPP=18.2106;RPPR=61.6401;RPR=7;RUN=1;SAF=7;SAP=18.2106;SAR=0;SRF=27;SRP=61.6401;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|0:18:13,3,2,0:13:500:3,2,0:114,77,0:-2.46652,-0.865344,-41.0113,0,-35.5919,-40.5638,-6.37991,-41.9144,-41.1659,-47.4913 0|0:16:10,3,0,3:10:389:3,0,3:113,0,116:-6.48214,-3.35408,-34.4249,-9.49243,-35.328,-41.5029,0,-25.8968,-32.0661,-31.163 0|0:6:4,1,0,1:4:155:1,0,1:39,0,33:-1.48588,-0.440254,-12.9192,-2.69,-13.2202,-15.477,0,-10.5637,-12.8152,-12.5142 dDocent_Contig_11073 129 . T G 81.8638 . AB=0.333333;ABP=5.9056;AC=1;AF=0.25;AN=4;AO=4;CIGAR=1X;DP=22;DPB=22;DPRA=1.2;EPP=11.6962;EPPR=42.0968;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=2;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=146;QR=655;RO=18;RPL=0;RPP=11.6962;RPPR=42.0968;RPR=4;RUN=1;SAF=0;SAP=11.6962;SAR=4;SRF=0;SRP=42.0968;SRR=18;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:12:8,4:8:285:4:146:-9.88535,0,-22.3807 ./.:.:.:.:.:.:.:. 0/0:10:10,0:10:370:0:0:0,-3.0103,-33.6496 dDocent_Contig_11074 7 . C A 443.363 . AB=0.0769231;ABP=63.6445;AC=0;AF=0;AN=6;AO=3;CIGAR=2M1X6M;DP=84;DPB=81.6667;DPRA=0;EPP=9.52472;EPPR=124.613;GTI=0;LEN=1;MEANALT=3;MQM=60;MQMR=60;NS=3;NUMALT=3;ODDS=6.93889e-18;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=114;QR=2138;RO=56;RPL=0;RPP=9.52472;RPPR=124.613;RPR=3;RUN=1;SAF=3;SAP=9.52472;SAR=0;SRF=56;SRP=124.613;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|0:39:24,9,3,3:24:906:9,3,3:348,114,122:-21.356,0,-71.5337,-19.2336,-64.8936,-92.5767,-18.5132,-64.1768,-83.4143,-91.8606 0|0:8:4,3,0,1:4:155:3,0,1:112,0,38:-7.96102,0,-11.837,-9.16514,-12.7401,-21.9055,-6.04697,-9.62508,-18.7892,-18.4881 0|0:37:28,9,0,0:28:1077:9,0,0:348,0,0:-20.5422,0,-86.0972,-28.971,-88.8064,-117.392,-28.971,-88.8064,-117.392,-117.392 dDocent_Contig_11075 21 . T C 149.18 . AB=0.1875;ABP=43.7254;AC=3;AF=0.5;AN=6;AO=9;CIGAR=1X3M1D6M1X3M2X;DP=48;DPB=47.6471;DPRA=0;EPP=22.5536;EPPR=76.8404;GTI=0;LEN=1;MEANALT=1.66667;MQM=60;MQMR=60;NS=3;NUMALT=3;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=357;QR=1299;RO=34;RPL=0;RPP=22.5536;RPPR=76.8404;RPR=9;RUN=1;SAF=9;SAP=22.5536;SAR=0;SRF=34;SRP=76.8404;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|1:22:18,2,2,0:18:690:2,2,0:82,80,0:-1.35457,0,-56.0079,-0.187887,-50.0181,-56.1869,-6.77311,-56.6099,-56.7889,-63.3803 0|1:3:2,0,1,0:2:79:0,1,0:0,39,0:-2.99347,-3.59553,-10.0998,0,-6.89557,-6.59454,-3.59553,-10.0998,-6.89557,-10.0998 0|1:23:14,0,6,3:14:530:0,6,3:0,238,116:-15.3836,-19.598,-63.0365,0,-43.4407,-41.6345,-10.0732,-53.508,-33.9112,-52.6049 dDocent_Contig_11076 9 . C A 44.5096 . AB=0.272727;ABP=7.94546;AC=1;AF=0.166667;AN=6;AO=3;CIGAR=1X;DP=22;DPB=22;DPRA=2;EPP=9.52472;EPPR=44.2683;GTI=0;LEN=1;MEANALT=1;MQM=36;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=0;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=117;QR=724;RO=19;RPL=0;RPP=9.52472;RPPR=44.2683;RPR=3;RUN=1;SAF=3;SAP=9.52472;SAR=0;SRF=19;SRP=44.2683;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:7:7,0:7:264:0:0:0,-2.10721,-24.1188 0/1:11:8,3:8:307:3:117:-6.27475,0,-24.6804 0/0:4:4,0:4:153:0:0:0,-1.20412,-14.1416 dDocent_Contig_11078 25 . C T 35.6188 . AB=0.133333;ABP=38.0434;AC=2;AF=0.333333;AN=6;AO=6;CIGAR=1X;DP=69;DPB=69;DPRA=0;EPP=16.0391;EPPR=137.642;GTI=0;LEN=1;MEANALT=1.33333;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=0;PAIREDR=0.758065;PAO=0;PQA=0;PQR=0;PRO=0;QA=237;QR=2419;RO=62;RPL=0;RPP=16.0391;RPPR=137.642;RPR=6;RUN=1;SAF=6;SAP=16.0391;SAR=0;SRF=62;SRP=137.642;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:39:37,2:37:1456:2:78:0,-4.33687,-123.893 0/1:8:5,2:5:196:2:81:-5.37702,0,-15.7594 0/1:22:20,2:20:767:2:78:-0.780641,0,-62.7212 dDocent_Contig_11079 19 . C A 324.477 . AB=0.117021;ABP=362.273;AC=2;AF=0.333333;AN=6;AO=33;CIGAR=1X;DP=291;DPB=291;DPRA=15.6667;EPP=74.6689;EPPR=563.25;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=1.38778e-17;PAIRED=1;PAIREDR=0.988372;PAO=0;PQA=0;PQR=0;PRO=0;QA=1319;QR=10410;RO=258;RPL=0;RPP=74.6689;RPPR=563.25;RPR=33;RUN=1;SAF=33;SAP=74.6689;SAR=0;SRF=258;SRP=563.25;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:191:166,25:166:6696:25:1013:-33.9661,0,-544.814 0/0:9:9,0:9:349:0:0:0,-2.70927,-31.7638 0/1:91:83,8:83:3365:8:306:-0.498257,0,-275.488 dDocent_Contig_11080 27 . A C 115.914 . AB=0.189189;ABP=34.0565;AC=2;AF=0.333333;AN=6;AO=7;CIGAR=1X;DP=40;DPB=40;DPRA=6.16667;EPP=18.2106;EPPR=74.6689;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=283;QR=1327;RO=33;RPL=0;RPP=18.2106;RPPR=74.6689;RPR=7;RUN=1;SAF=7;SAP=18.2106;SAR=0;SRF=33;SRP=74.6689;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:13:11,2:11:448:2:82:-3.86629,0,-36.7626 0/0:3:3,0:3:114:0:0:0,-0.90309,-10.6301 0/1:24:19,5:19:765:5:201:-11.2458,0,-61.9476 dDocent_Contig_11081 116 . C T 1104.6 . AB=0.571429;ABP=6.1124;AC=3;AF=0.5;AN=6;AO=40;CIGAR=1X2M;DP=81;DPB=81;DPRA=3.18182;EPP=89.8692;EPPR=59.4686;GTI=0;LEN=1;MEANALT=2;MQM=56.625;MQMR=60;NS=3;NUMALT=2;ODDS=0;PAIRED=0.925;PAIREDR=0.923077;PAO=0;PQA=0;PQR=0;PRO=0;QA=1315;QR=826;RO=26;RPL=0;RPP=89.8692;RPPR=59.4686;RPR=40;RUN=1;SAF=0;SAP=89.8692;SAR=40;SRF=0;SRP=59.4686;SRR=26;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 1|1:53:9,13,31:9:280:13,31:438,1001:-90.2468,-57.4573,-76.0258,-13.0357,0,-26.1771 0|0:11:11,0,0:11:365:0,0:0,0:0,-3.31133,-33.1715,-3.31133,-33.1715,-33.1715 0|1:17:6,2,9:6:181:2,9:69,314:-23.7359,-19.9371,-33.796,0,-8.83079,-11.7381 dDocent_Contig_11082 28 . G T 485.501 . AB=0.0930233;ABP=126.734;AC=0;AF=0;AN=6;AO=8;CIGAR=1M1X4M;DP=104;DPB=105.667;DPRA=0;EPP=20.3821;EPPR=133.299;GTI=0;LEN=1;MEANALT=4.5;MQM=60;MQMR=60;NS=3;NUMALT=4;ODDS=0;PAIRED=1;PAIREDR=0.666667;PAO=0;PQA=0;PQR=0;PRO=0;QA=310;QR=2217;RO=60;RPL=0;RPP=20.3821;RPPR=133.299;RPR=8;RUN=1;SAF=8;SAP=20.3821;SAR=0;SRF=60;SRP=133.299;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|0:52:28,2,3,7,12:28:1036:2,3,7,12:75,117,277,480:-31.1155,-33.4752,-117.603,-29.9276,-108.587,-113.754,-16.7478,-95.406,-91.8587,-99.3698,0,-78.6594,-75.1119,-61.93,-81.1181 0|0:18:11,0,5,0,1:11:406:0,5,0,1:0,172,0,29:-10.6546,-13.966,-47.1862,0,-33.2255,-31.7204,-13.966,-47.1862,-33.2255,-47.1862,-11.6663,-44.8816,-30.9231,-44.8816,-44.5806 0|0:34:21,4,6,1,1:21:775:4,6,1,1:140,227,33,39:-12.3028,-8.06537,-70.239,0,-52.8325,-61.594,-15.9587,-68.7763,-60.7332,-79.0435,-15.4161,-68.2366,-60.1933,-76.1379,-78.504 dDocent_Contig_11084 142 . A G 136.37 . AB=0.3;ABP=6.48466;AC=1;AF=0.166667;AN=6;AO=3;CIGAR=1X2M1X;DP=27;DPB=27;DPRA=5;EPP=9.52472;EPPR=46.4397;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=2;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=118;QR=702;RO=20;RPL=0;RPP=9.52472;RPPR=46.4397;RPR=3;RUN=1;SAF=0;SAP=9.52472;SAR=3;SRF=0;SRP=46.4397;SRR=20;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|0:15:11,0,4:11:391:0,4:0,148:-9.16652,-12.4778,-44.3303,0,-32.2183,-31.0142 0|0:2:2,0,0:2:69:0,0:0,0:0,-0.60206,-6.55228,-0.60206,-6.55228,-6.55228 0|1:10:7,3,0:7:242:3,0:118,0:-7.99259,0,-19.1067,-10.0998,-20.0098,-29.7309 dDocent_Contig_11085 10 . A G 33.9229 . AB=0.117647;ABP=46.1843;AC=1;AF=0.166667;AN=6;AO=4;CIGAR=1X;DP=44;DPB=44;DPRA=6.8;EPP=11.6962;EPPR=89.8692;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=164;QR=1566;RO=40;RPL=0;RPP=11.6962;RPPR=89.8692;RPR=4;RUN=1;SAF=4;SAP=11.6962;SAR=0;SRF=40;SRP=89.8692;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:34:30,4:30:1168:4:164:-4.91488,0,-95.1545 0/0:6:6,0:6:239:0:0:0,-1.80618,-21.8844 0/0:4:4,0:4:159:0:0:0,-1.20412,-14.6914 dDocent_Contig_11086 181 . C T 152.157 . AB=0.333333;ABP=7.35324;AC=1;AF=0.166667;AN=6;AO=6;CIGAR=1X;DP=38;DPB=38;DPRA=1.8;EPP=16.0391;EPPR=72.4974;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=242;QR=1290;RO=32;RPL=6;RPP=16.0391;RPPR=72.4974;RPR=0;RUN=1;SAF=0;SAP=16.0391;SAR=6;SRF=0;SRP=72.4974;SRR=32;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:18:12,6:12:489:6:242:-16.7384,0,-38.9428 0/0:17:17,0:17:678:0:0:0,-5.11751,-61.3509 0/0:3:3,0:3:123:0:0:0,-0.90309,-11.4648 dDocent_Contig_11087 40 . A T 199.865 . AB=0.466667;ABP=3.15506;AC=1;AF=0.166667;AN=6;AO=7;CIGAR=1X;DP=24;DPB=24;DPRA=3.33333;EPP=18.2106;EPPR=39.9253;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=285;QR=692;RO=17;RPL=0;RPP=18.2106;RPPR=39.9253;RPR=7;RUN=1;SAF=7;SAP=18.2106;SAR=0;SRF=17;SRP=39.9253;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:15:8,7:8:327:7:285:-21.509,0,-25.2847 0/0:2:2,0:2:81:0:0:0,-0.60206,-7.68573 0/0:7:7,0:7:284:0:0:0,-2.10721,-25.934 dDocent_Contig_11088 12 . T G 287.708 . AB=0.295455;ABP=19.0002;AC=3;AF=0.5;AN=6;AO=13;CIGAR=1X;DP=44;DPB=44;DPRA=0;EPP=31.2394;EPPR=70.3259;GTI=0;LEN=1;MEANALT=1;MQM=57.3077;MQMR=60;NS=3;NUMALT=1;ODDS=3.46945e-18;PAIRED=0.846154;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=517;QR=1256;RO=31;RPL=0;RPP=31.2394;RPPR=70.3259;RPR=13;RUN=1;SAF=13;SAP=31.2394;SAR=0;SRF=31;SRP=70.3259;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:15:12,3:12:489:3:110:-5.73558,0,-39.8459 0/1:16:11,5:11:444:5:204:-13.904,0,-35.4988 0/1:13:8,5:8:323:5:203:-14.6541,0,-25.5252 dDocent_Contig_11089 17 . T C 44.3243 . AB=0.16;ABP=28.1125;AC=2;AF=0.333333;AN=6;AO=4;CIGAR=1X;DP=35;DPB=35;DPRA=1.25;EPP=11.6962;EPPR=70.3259;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=163;QR=1224;RO=31;RPL=0;RPP=11.6962;RPPR=70.3259;RPR=4;RUN=1;SAF=4;SAP=11.6962;SAR=0;SRF=31;SRP=70.3259;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:10:10,0:10:398:0:0:0,-3.0103,-36.1788 0/1:9:7,2:7:255:2:81:-4.97646,0,-20.5822 0/1:16:14,2:14:571:2:82:-2.9632,0,-46.9154 dDocent_Contig_11090 151 . C A 67.4703 . AB=0.333333;ABP=5.18177;AC=1;AF=0.166667;AN=6;AO=4;CIGAR=1X;DP=44;DPB=44;DPRA=0.657895;EPP=11.6962;EPPR=89.8692;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=161;QR=1527;RO=40;RPL=0;RPP=11.6962;RPPR=89.8692;RPR=4;RUN=1;SAF=0;SAP=11.6962;SAR=4;SRF=0;SRP=89.8692;SRR=40;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:19:19,0:19:737:0:0:0,-5.71957,-66.6471 0/0:16:15,1:15:588:1:40:0,-0.820801,-49.262 0/1:9:6,3:6:202:3:121:-8.57072,0,-15.7907 dDocent_Contig_11092 46 . C T 84.6809 . AB=0.285714;ABP=8.59409;AC=1;AF=0.166667;AN=6;AO=5;CIGAR=1X;DP=61;DPB=61;DPRA=2.04167;EPP=13.8677;EPPR=124.613;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=0.928571;PAO=0;PQA=0;PQR=0;PRO=0;QA=197;QR=2224;RO=56;RPL=0;RPP=13.8677;RPPR=124.613;RPR=5;RUN=1;SAF=5;SAP=13.8677;SAR=0;SRF=56;SRP=124.613;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:12:12,0:12:477:0:0:0,-3.61236,-43.2808 0/0:35:34,1:34:1344:1:40:0,-6.54037,-117.226 0/1:14:10,4:10:403:4:157:-10.292,0,-32.4154 dDocent_Contig_11093 58 . G T 1558.35 . AB=0.342857;ABP=10.5174;AC=4;AF=0.666667;AN=6;AO=50;CIGAR=1X;DP=76;DPB=76;DPRA=0;EPP=111.584;EPPR=59.4686;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=2000;QR=1043;RO=26;RPL=50;RPP=111.584;RPPR=59.4686;RPR=0;RUN=1;SAF=50;SAP=111.584;SAR=0;SRF=26;SRP=59.4686;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 1/1:41:3,38:3:119:38:1518:-125.764,-1.24773,0 0/1:21:14,7:14:563:7:286:-19.7932,0,-44.6915 0/1:14:9,5:9:361:5:196:-13.8004,0,-28.6384 dDocent_Contig_11094 88 . C T 185.421 . AB=0.4;ABP=4.74748;AC=1;AF=0.166667;AN=6;AO=8;CIGAR=1X;DP=31;DPB=31;DPRA=3.63636;EPP=20.3821;EPPR=52.9542;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=286;QR=751;RO=23;RPL=8;RPP=20.3821;RPPR=52.9542;RPR=0;RUN=1;SAF=8;SAP=20.3821;SAR=0;SRF=23;SRP=52.9542;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:20:12,8:12:390:8:286:-20.065,0,-29.3915 0/0:5:5,0:5:172:0:0:0,-1.50515,-15.8182 0/0:6:6,0:6:189:0:0:0,-1.80618,-17.3208 dDocent_Contig_11095 49 . T G 67.0406 . AB=0.162162;ABP=39.6906;AC=2;AF=0.333333;AN=6;AO=6;CIGAR=1X;DP=41;DPB=41;DPRA=4.625;EPP=16.0391;EPPR=79.0118;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=229;QR=1408;RO=35;RPL=0;RPP=16.0391;RPPR=79.0118;RPR=6;RUN=1;SAF=6;SAP=16.0391;SAR=0;SRF=35;SRP=79.0118;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:24:20,4:20:813:4:148:-6.45206,0,-66.2592 0/0:4:4,0:4:156:0:0:0,-1.20412,-14.4162 0/1:13:11,2:11:439:2:81:-3.77234,0,-35.9508 dDocent_Contig_11096 13 . A T 778.346 . AB=0.586957;ABP=6.03148;AC=3;AF=0.5;AN=6;AO=27;CIGAR=1X;DP=46;DPB=46;DPRA=0;EPP=61.6401;EPPR=44.2683;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=1068;QR=765;RO=19;RPL=0;RPP=61.6401;RPPR=44.2683;RPR=27;RUN=1;SAF=27;SAP=61.6401;SAR=0;SRF=19;SRP=44.2683;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:13:5,8:5:205:8:315:-24.8014,0,-14.9216 0/1:13:5,8:5:203:8:315:-24.8011,0,-14.7397 0/1:20:9,11:9:357:11:438:-33.755,0,-26.4713 dDocent_Contig_11098 43 . T C 125.296 . AB=0.333333;ABP=6.62942;AC=1;AF=0.25;AN=4;AO=5;CIGAR=1X;DP=25;DPB=25;DPRA=1.5;EPP=13.8677;EPPR=46.4397;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=2;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=204;QR=803;RO=20;RPL=0;RPP=13.8677;RPPR=46.4397;RPR=5;RUN=1;SAF=5;SAP=13.8677;SAR=0;SRF=20;SRP=46.4397;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:15:10,5:10:394:5:204:-14.2286,0,-31.3021 ./.:.:.:.:.:.:.:. 0/0:10:10,0:10:409:0:0:0,-3.0103,-37.1706 dDocent_Contig_11099 24 . C G 2083.21 . AB=0.75;ABP=33.4109;AC=4;AF=0.666667;AN=6;AO=64;CIGAR=1X;DP=79;DPB=79;DPRA=0;EPP=141.985;EPPR=35.5824;GTI=0;LEN=1;MEANALT=1;MQM=59.2344;MQMR=57.8;NS=3;NUMALT=1;ODDS=0;PAIRED=0;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=2562;QR=608;RO=15;RPL=0;RPP=141.985;RPPR=35.5824;RPR=64;RUN=1;SAF=64;SAP=141.985;SAR=0;SRF=15;SRP=35.5824;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:43:9,34:9:366:34:1365:-110.117,0,-20.3607 0/1:13:5,8:5:201:8:322:-25.4351,0,-14.5566 1/1:23:1,22:1:41:22:875:-76.292,-4.24061,0 dDocent_Contig_11100 108 . G A 969.871 . AB=0.351145;ABP=28.2226;AC=3;AF=0.5;AN=6;AO=46;CIGAR=1X;DP=131;DPB=131;DPRA=0;EPP=102.898;EPPR=187.585;GTI=0;LEN=1;MEANALT=1;MQM=42.9783;MQMR=46.9412;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=1594;QR=2784;RO=85;RPL=0;RPP=102.898;RPPR=187.585;RPR=46;RUN=1;SAF=0;SAP=102.898;SAR=46;SRF=0;SRP=187.585;SRR=85;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:52:35,17:35:1130:17:586:-36.4907,0,-85.4857 0/1:32:21,11:21:698:11:383:-24.569,0,-53.0349 0/1:47:29,18:29:956:18:625:-41.4502,0,-71.5576 dDocent_Contig_11101 109 . G A 40.2162 . AB=0;ABP=0;AC=0;AF=0;AN=6;AO=3;CIGAR=1X1M1X3M;DP=30;DPB=31.6667;DPRA=2.28571;EPP=9.52472;EPPR=37.7539;GTI=0;LEN=1;MEANALT=4;MQM=11;MQMR=60;NS=3;NUMALT=2;ODDS=0;PAIRED=0;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=33;QR=533;RO=16;RPL=0;RPP=9.52472;RPPR=37.7539;RPR=3;RUN=1;SAF=0;SAP=9.52472;SAR=3;SRF=0;SRP=37.7539;SRR=16;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|0:16:10,3,1:10:327:3,1:33,35:0,-1.7452,-27.3856,-2.69148,-27.9783,-28.9342 0|0:6:0,0,6:0:0:0,6:0,201:-3.84525,-3.84525,-3.84525,-1.80618,-1.80618,0 0|0:8:6,0,2:6:206:0,2:0,68:0,-1.80618,-18.7385,-1.07959,-18.1502,-17.5481 dDocent_Contig_11102 15 . A T 257.183 . AB=0.357143;ABP=7.97367;AC=2;AF=0.333333;AN=6;AO=10;CIGAR=1X;DP=38;DPB=38;DPRA=1.4;EPP=24.725;EPPR=63.8115;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=0.8;PAIREDR=0.964286;PAO=0;PQA=0;PQR=0;PRO=0;QA=410;QR=1116;RO=28;RPL=0;RPP=24.725;RPPR=63.8115;RPR=10;RUN=1;SAF=10;SAP=24.725;SAR=0;SRF=28;SRP=63.8115;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:15:8,7:8:326:7:287:-21.6898,0,-25.1944 0/0:10:10,0:10:404:0:0:0,-3.0103,-36.7198 0/1:13:10,3:10:386:3:123:-7.5514,0,-31.1796 dDocent_Contig_11103 10 . T A 631.971 . AB=0.413793;ABP=6.75422;AC=3;AF=0.5;AN=6;AO=24;CIGAR=1X2M3D2M2X;DP=58;DPB=50.8;DPRA=0;EPP=55.1256;EPPR=74.6689;GTI=0;LEN=1;MEANALT=1.33333;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=946;QR=1288;RO=33;RPL=0;RPP=55.1256;RPPR=74.6689;RPR=24;RUN=1;SAF=24;SAP=55.1256;SAR=0;SRF=33;SRP=74.6689;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|1:19:5,14:5:192:14:551:-44.2141,0,-11.9299 0|1:27:22,4:22:864:4:160:-6.59743,0,-69.8995 0|1:12:6,6:6:232:6:235:-17.9085,0,-17.6353 dDocent_Contig_11104 8 . C A 4263.05 . AB=0.785276;ABP=118.232;AC=4;AF=0.666667;AN=6;AO=141;CIGAR=1X;DP=177;DPB=177;DPRA=0;EPP=309.188;EPPR=81.1833;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=5356;QR=1397;RO=36;RPL=0;RPP=309.188;RPPR=81.1833;RPR=141;RUN=1;SAF=141;SAP=309.188;SAR=0;SRF=36;SRP=81.1833;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:98:28,70:28:1085:70:2686:-212.429,0,-68.4533 1/1:14:1,13:1:39:13:496:-41.0894,-0.317856,0 0/1:65:7,58:7:273:58:2174:-176.309,0,-5.37106 dDocent_Contig_11105 22 . T C 710.843 . AB=0.456522;ABP=3.76559;AC=4;AF=0.666667;AN=6;AO=21;CIGAR=1X1M;DP=46;DPB=46;DPRA=0;EPP=48.6112;EPPR=48.6112;GTI=0;LEN=1;MEANALT=1.33333;MQM=60;MQMR=60;NS=3;NUMALT=2;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=845;QR=830;RO=21;RPL=0;RPP=48.6112;RPPR=48.6112;RPR=21;RUN=1;SAF=21;SAP=48.6112;SAR=0;SRF=21;SRP=48.6112;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|1:24:16,0,8:16:634:0,8:0,321:-22.033,-26.8495,-79.028,0,-52.5777,-50.1694 0|1:15:5,0,10:5:196:0,10:0,404:-32.2046,-33.7098,-49.8239,0,-16.5097,-13.4994 1|1:7:0,4,3:0:0:4,3:148,120:-22.3695,-10.2846,-9.08048,-12.4717,0,-11.5686 dDocent_Contig_11106 118 . A G 429.017 . AB=0.438596;ABP=4.877;AC=3;AF=0.5;AN=6;AO=25;CIGAR=1X;DP=57;DPB=57;DPRA=0;EPP=57.2971;EPPR=72.4974;GTI=0;LEN=1;MEANALT=1;MQM=46.28;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=840;QR=1094;RO=32;RPL=0;RPP=57.2971;RPPR=72.4974;RPR=25;RUN=1;SAF=0;SAP=57.2971;SAR=25;SRF=0;SRP=72.4974;SRR=32;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:36:21,15:21:716:15:506:-24.3655,0,-53.9198 0/1:2:1,1:1:34:1:29:-0.195047,0,-2.79685 0/1:19:10,9:10:344:9:305:-22.0565,0,-25.5735 dDocent_Contig_11107 122 . A T 51.7003 . AB=0.3;ABP=6.48466;AC=1;AF=0.166667;AN=6;AO=3;CIGAR=1X;DP=23;DPB=23;DPRA=1.53846;EPP=9.52472;EPPR=46.4397;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=104;QR=705;RO=20;RPL=0;RPP=9.52472;RPPR=46.4397;RPR=3;RUN=1;SAF=0;SAP=9.52472;SAR=3;SRF=0;SRP=46.4397;SRR=20;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:10:7,3:7:243:3:104:-6.69272,0,-19.1977 0/0:3:3,0:3:105:0:0:0,-0.90309,-9.79609 0/0:10:10,0:10:357:0:0:0,-3.0103,-32.4723 dDocent_Contig_11108 9 . A G 55.4483 . AB=0.142857;ABP=49.5419;AC=2;AF=0.333333;AN=6;AO=6;CIGAR=1X;DP=84;DPB=84;DPRA=0.5;EPP=16.0391;EPPR=163.811;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=0.974359;PAO=0;PQA=0;PQR=0;PRO=0;QA=229;QR=2983;RO=78;RPL=0;RPP=16.0391;RPPR=172.385;RPR=6;RUN=1;SAF=6;SAP=16.0391;SAR=0;SRF=77;SRP=163.811;SRR=1;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:42:42,0:42:1616:0:0:0,-12.6433,-145.703 0/1:22:18,4:18:691:4:151:-7.33512,0,-55.9012 0/1:20:18,2:18:676:2:78:-1.38287,0,-55.1515 dDocent_Contig_11109 112 . G A 240.272 . AB=0.238095;ABP=40.5458;AC=3;AF=0.5;AN=6;AO=15;CIGAR=1X;DP=63;DPB=63;DPRA=0;EPP=35.5824;EPPR=107.241;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=57.875;NS=3;NUMALT=1;ODDS=3.46945e-18;PAIRED=0;PAIREDR=0.479167;PAO=0;PQA=0;PQR=0;PRO=0;QA=521;QR=1642;RO=48;RPL=0;RPP=35.5824;RPPR=107.241;RPR=15;RUN=1;SAF=0;SAP=35.5824;SAR=15;SRF=0;SRP=107.241;SRR=48;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:17:15,2:15:516:2:69:-1.43515,0,-41.6479 0/1:20:16,4:16:533:4:139:-6.83209,0,-42.2607 0/1:26:17,9:17:593:9:313:-20.6803,0,-42.7965 dDocent_Contig_11110 19 . T A 690.881 . AB=0.254098;ABP=67.0865;AC=3;AF=0.5;AN=6;AO=31;CIGAR=1X;DP=122;DPB=122;DPRA=0;EPP=70.3259;EPPR=200.614;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=59.5934;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=0.989011;PAO=0;PQA=0;PQR=0;PRO=0;QA=1225;QR=3588;RO=91;RPL=0;RPP=70.3259;RPPR=200.614;RPR=31;RUN=1;SAF=31;SAP=70.3259;SAR=0;SRF=91;SRP=200.614;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:89:65,24:65:2554:24:941:-58.2043,0,-203.221 0/1:10:6,4:6:239:4:161:-11.8652,0,-17.4012 0/1:23:20,3:20:795:3:123:-4.5411,0,-64.9465 dDocent_Contig_11111 19 . A G 62.9251 . AB=0.190476;ABP=20.4855;AC=1;AF=0.166667;AN=6;AO=4;CIGAR=1X;DP=55;DPB=55;DPRA=1.23529;EPP=11.6962;EPPR=113.755;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=58.3725;NS=3;NUMALT=1;ODDS=0;PAIRED=0;PAIREDR=0.803922;PAO=0;PQA=0;PQR=0;PRO=0;QA=153;QR=2037;RO=51;RPL=0;RPP=11.6962;RPPR=113.755;RPR=4;RUN=1;SAF=4;SAP=11.6962;SAR=0;SRF=51;SRP=113.755;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:21:17,4:17:692:4:153:-7.81539,0,-55.7441 0/0:15:15,0:15:585:0:0:0,-4.51545,-52.9865 0/0:19:19,0:19:760:0:0:0,-5.71957,-68.18 dDocent_Contig_11112 54 . T C 59.4225 . AB=0.333333;ABP=5.18177;AC=1;AF=0.25;AN=4;AO=3;CIGAR=1X;DP=28;DPB=28;DPRA=0.473684;EPP=9.52472;EPPR=57.2971;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=2;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=111;QR=988;RO=25;RPL=3;RPP=9.52472;RPPR=57.2971;RPR=0;RUN=1;SAF=3;SAP=9.52472;SAR=0;SRF=25;SRP=57.2971;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:9:6,3:6:234:3:111:-7.64122,0,-18.7187 0/0:19:19,0:19:754:0:0:0,-5.71957,-68.1843 ./.:.:.:.:.:.:.:. dDocent_Contig_11113 19 . C T 38.4862 . AB=0.285714;ABP=5.80219;AC=1;AF=0.166667;AN=6;AO=2;CIGAR=1X;DP=73;DPB=73;DPRA=0.212121;EPP=7.35324;EPPR=157.185;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=82;QR=2842;RO=71;RPL=0;RPP=7.35324;RPPR=157.185;RPR=2;RUN=1;SAF=2;SAP=7.35324;SAR=0;SRF=71;SRP=157.185;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:37:37,0:37:1467:0:0:0,-11.1381,-132.27 0/1:7:5,2:5:203:2:82:-5.67247,0,-16.5458 0/0:29:29,0:29:1172:0:0:0,-8.72987,-105.757 dDocent_Contig_11114 54 . G A 154.124 . AB=0.272727;ABP=17.8158;AC=3;AF=0.5;AN=6;AO=9;CIGAR=1X;DP=33;DPB=33;DPRA=0;EPP=22.5536;EPPR=55.1256;GTI=0;LEN=1;MEANALT=1;MQM=43.4444;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=0;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=332;QR=905;RO=24;RPL=9;RPP=22.5536;RPPR=55.1256;RPR=0;RUN=1;SAF=9;SAP=22.5536;SAR=0;SRF=24;SRP=55.1256;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:18:12,6:12:446:6:220:-13.8595,0,-35.0537 0/1:10:9,1:9:346:1:40:-0.976181,0,-28.4847 0/1:5:3,2:3:113:2:72:-5.06215,0,-9.03243 dDocent_Contig_11116 22 . G C 380.489 . AB=0.208333;ABP=73.9451;AC=3;AF=0.5;AN=6;AO=20;CIGAR=1X1M1X;DP=96;DPB=96;DPRA=0;EPP=46.4397;EPPR=165.871;GTI=0;LEN=1;MEANALT=1.33333;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=0.746667;PAO=0;PQA=0;PQR=0;PRO=0;QA=794;QR=2917;RO=75;RPL=0;RPP=46.4397;RPPR=165.871;RPR=20;RUN=1;SAF=20;SAP=46.4397;SAR=0;SRF=75;SRP=165.871;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|1:58:50,7:50:1952:7:278:-7.82236,0,-158.332 0|1:16:7,9:7:277:9:354:-27.4051,0,-20.4827 0|1:22:18,4:18:688:4:162:-8.3443,0,-55.624 dDocent_Contig_11120 7 . C T 543.23 . AB=0.32;ABP=24.117;AC=3;AF=0.5;AN=6;AO=24;CIGAR=1X;DP=75;DPB=75;DPRA=0;EPP=55.1256;EPPR=113.755;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=904;QR=1967;RO=51;RPL=0;RPP=55.1256;RPPR=113.755;RPR=24;RUN=1;SAF=24;SAP=55.1256;SAR=0;SRF=51;SRP=113.755;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:54:36,18:36:1389:18:676:-44.9135,0,-109.036 0/1:5:3,2:3:110:2:72:-5.33149,0,-8.75446 0/1:16:12,4:12:468:4:156:-9.60081,0,-37.6561 dDocent_Contig_11122 15 . C G 132.664 . AB=0.571429;ABP=3.32051;AC=1;AF=0.166667;AN=6;AO=4;CIGAR=1X1M1X1M1X;DP=38;DPB=38;DPRA=0.451613;EPP=11.6962;EPPR=72.4974;GTI=0;LEN=1;MEANALT=2;MQM=60;MQMR=60;NS=3;NUMALT=2;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=152;QR=1253;RO=32;RPL=0;RPP=11.6962;RPPR=72.4974;RPR=4;RUN=1;SAF=4;SAP=11.6962;SAR=0;SRF=32;SRP=72.4974;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|0:15:15,0,0:15:599:0,0:0,0:0,-4.51545,-54.2477,-4.51545,-54.2477,-54.2477 1|0:7:1,4,2:1:39:4,2:152,75:-15.09,-2.922,-4.92874,-9.24987,0,-11.8557 0|0:16:16,0,0:16:615:0,0:0,0:0,-4.81648,-55.6818,-4.81648,-55.6818,-55.6818 dDocent_Contig_11123 70 . C A 34.5623 . AB=0.2;ABP=14.7363;AC=1;AF=0.166667;AN=6;AO=3;CIGAR=1X;DP=46;DPB=46;DPRA=0.967742;EPP=9.52472;EPPR=96.3836;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=0;PAIREDR=0.697674;PAO=0;PQA=0;PQR=0;PRO=0;QA=105;QR=1643;RO=43;RPL=3;RPP=9.52472;RPPR=96.3836;RPR=0;RUN=1;SAF=3;SAP=9.52472;SAR=0;SRF=43;SRP=96.3836;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:14:14,0:14:537:0:0:0,-4.21442,-48.6742 0/0:17:17,0:17:653:0:0:0,-5.11751,-59.1061 0/1:15:12,3:12:453:3:105:-5.27999,0,-36.6011 dDocent_Contig_11124 16 . T A 379.295 . AB=0.384615;ABP=7.52028;AC=1;AF=0.166667;AN=6;AO=16;CIGAR=2X2M2D1X;DP=55;DPB=50.4286;DPRA=13.25;EPP=37.7539;EPPR=87.6977;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=603;QR=1545;RO=39;RPL=0;RPP=37.7539;RPPR=87.6977;RPR=16;RUN=1;SAF=16;SAP=37.7539;SAR=0;SRF=39;SRP=87.6977;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|1:39:24,15:24:954:15:565:-39.4515,0,-74.4271 0|0:2:2,0:2:79:0:0:0,-0.60206,-7.49763 0|0:14:13,1:13:512:1:38:0,-0.417151,-42.6308 dDocent_Contig_11126 38 . T G 37.7114 . AB=0.547619;ABP=3.83753;AC=2;AF=0.333333;AN=6;AO=39;CIGAR=1X;DP=87;DPB=87;DPRA=0;EPP=79.2345;EPPR=98.736;GTI=0;LEN=1;MEANALT=1;MQM=8.28205;MQMR=58.3333;NS=3;NUMALT=1;ODDS=0;PAIRED=0;PAIREDR=0.958333;PAO=0;PQA=0;PQR=0;PRO=0;QA=1470;QR=1938;RO=48;RPL=0;RPP=87.6977;RPPR=90.593;RPR=39;RUN=1;SAF=1;SAP=79.2345;SAR=38;SRF=47;SRP=98.736;SRR=1;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:45:29,16:29:1171:16:619:0,-3.0414,-95.1552 0/1:17:5,12:5:202:12:455:-5.58981,0,-13.0617 0/1:25:14,11:14:565:11:396:-0.555716,0,-41.492 dDocent_Contig_11128 18 . T C 1411.08 . AB=0.5;ABP=3.0103;AC=4;AF=0.666667;AN=6;AO=44;CIGAR=1X3M;DP=88;DPB=88;DPRA=0;EPP=90.0666;EPPR=50.7827;GTI=0;LEN=1;MEANALT=4;MQM=58.6364;MQMR=56.3182;NS=3;NUMALT=5;ODDS=0;PAIRED=0.318182;PAIREDR=0.863636;PAO=0;PQA=0;PQR=0;PRO=0;QA=1751;QR=800;RO=22;RPL=0;RPP=98.5551;RPPR=50.7827;RPR=44;RUN=1;SAF=43;SAP=90.0666;SAR=1;SRF=22;SRP=50.7827;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|1:47:16,0,0,3,0,26:16:582:0,0,3,0,26:0,0,121,0,1048:-81.6473,-86.4638,-132.45,-86.4638,-132.45,-132.45,-82.5351,-128.513,-128.513,-127.61,-86.4638,-132.45,-132.45,-128.513,-132.45,0,-46.0623,-46.0623,-42.1375,-46.0623,-38.2355 1|1:11:0,3,0,1,0,6:0:0:3,0,1,0,6:113,0,40,0,237:-28.6483,-19.3856,-18.4825,-28.6483,-19.3856,-28.6483,-27.3507,-18.0958,-27.3507,-27.0497,-28.6483,-19.3856,-28.6483,-27.3507,-28.6483,-9.30929,0,-9.30929,-8.0337,-9.30929,-7.50311 0|1:30:6,0,5,2,4,12:6:218:0,5,2,4,12:0,194,78,154,466:-36.3335,-38.1397,-55.9424,-22.1941,-39.9982,-38.493,-35.5248,-53.3239,-37.3821,-52.7218,-25.4927,-43.2963,-27.3504,-40.6797,-42.0921,0,-17.8097,-1.85555,-15.1993,-5.1567,-14.1974 dDocent_Contig_11129 19 . C T 31.5286 . AB=0.2;ABP=10.8276;AC=1;AF=0.166667;AN=6;AO=2;CIGAR=1X;DP=39;DPB=39;DPRA=0.689655;EPP=7.35324;EPPR=83.3548;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=81;QR=1486;RO=37;RPL=0;RPP=7.35324;RPPR=83.3548;RPR=2;RUN=1;SAF=2;SAP=7.35324;SAR=0;SRF=37;SRP=83.3548;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:10:8,2:8:321:2:81:-4.67543,0,-26.2473 0/0:13:13,0:13:523:0:0:0,-3.91339,-47.4171 0/0:16:16,0:16:642:0:0:0,-4.81648,-58.1133 dDocent_Contig_11130 15 . G A 96.6044 . AB=0.142857;ABP=57.2971;AC=1;AF=0.166667;AN=6;AO=9;CIGAR=1X;DP=110;DPB=110;DPRA=2.9375;EPP=22.5536;EPPR=222.329;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=362;QR=4000;RO=101;RPL=0;RPP=22.5536;RPPR=222.329;RPR=9;RUN=1;SAF=9;SAP=22.5536;SAR=0;SRF=101;SRP=222.329;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:49:42,7:42:1660:7:284:-11.1833,0,-134.877 0/0:16:16,0:16:640:0:0:0,-4.81648,-57.9319 0/0:45:43,2:43:1700:2:78:0,-6.14305,-145.82 dDocent_Contig_11131 27 . G T 36.896 . AB=0.176471;ABP=18.4661;AC=1;AF=0.166667;AN=6;AO=10;CIGAR=1X;DP=122;DPB=122;DPRA=0;EPP=24.725;EPPR=246.215;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=378;QR=4417;RO=112;RPL=0;RPP=24.725;RPPR=246.215;RPR=10;RUN=1;SAF=10;SAP=24.725;SAR=0;SRF=112;SRP=246.215;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:78:72,6:72:2879:6:234:0,-2.0497,-237.784 0/1:17:14,3:14:508:3:114:-5.51341,0,-40.9186 0/0:27:26,1:26:1030:1:30:0,-5.12824,-89.9949 dDocent_Contig_11133 63 . G A 209.12 . AB=0.290323;ABP=14.8483;AC=1;AF=0.166667;AN=6;AO=9;CIGAR=1X;DP=50;DPB=50;DPRA=3.26316;EPP=22.5536;EPPR=92.0407;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=349;QR=1560;RO=41;RPL=9;RPP=22.5536;RPPR=92.0407;RPR=0;RUN=1;SAF=9;SAP=22.5536;SAR=0;SRF=41;SRP=92.0407;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:31:22,9:22:849:9:349:-22.4345,0,-67.3998 0/0:2:2,0:2:78:0:0:0,-0.60206,-7.40347 0/0:17:17,0:17:633:0:0:0,-5.11751,-57.3001 dDocent_Contig_11134 15 . C T 509.519 . AB=0.24;ABP=61.7269;AC=2;AF=0.333333;AN=6;AO=24;CIGAR=1X;DP=105;DPB=105;DPRA=10;EPP=55.1256;EPPR=178.9;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=932;QR=3215;RO=81;RPL=0;RPP=55.1256;RPPR=178.9;RPR=24;RUN=1;SAF=24;SAP=55.1256;SAR=0;SRF=81;SRP=178.9;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:65:47,18:47:1859:18:700:-43.7633,0,-147.947 0/0:5:5,0:5:197:0:0:0,-1.50515,-18.1055 0/1:35:29,6:29:1159:6:232:-10.7114,0,-94.0536 dDocent_Contig_11135 8 . C T 52.8264 . AB=0.210526;ABP=16.8392;AC=2;AF=0.333333;AN=6;AO=4;CIGAR=1X;DP=28;DPB=28;DPRA=1.05556;EPP=11.6962;EPPR=55.1256;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=153;QR=902;RO=24;RPL=0;RPP=11.6962;RPPR=55.1256;RPR=4;RUN=1;SAF=4;SAP=11.6962;SAR=0;SRF=24;SRP=55.1256;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:9:7,2:7:265:2:77:-4.59987,0,-21.501 0/1:10:8,2:8:300:2:76:-4.20437,0,-24.3454 0/0:9:9,0:9:337:0:0:0,-2.70927,-30.6828 dDocent_Contig_11136 8 . C A 532.605 . AB=0.382353;ABP=7.09778;AC=4;AF=0.666666;AN=6;AO=13;CIGAR=1M1X1M1X;DP=47;DPB=49;DPRA=0;EPP=31.2394;EPPR=55.1256;GTI=0;LEN=1;MEANALT=2;MQM=60;MQMR=60;NS=3;NUMALT=2;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=495;QR=903;RO=24;RPL=0;RPP=31.2394;RPPR=55.1256;RPR=13;RUN=1;SAF=13;SAP=31.2394;SAR=0;SRF=24;SRP=55.1256;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|1:13:6,6,0:6:227:6,0:230,0:-17.0738,0,-16.8016,-18.88,-18.6078,-37.4871 0|1:24:18,0,6:18:676:0,6:0,231:-13.9332,-19.3517,-74.7236,0,-55.7542,-53.948 1|1:10:0,2,7:0:0:2,7:75,264:-27.775,-21.6322,-21.0302,-6.13997,0,-4.03276 dDocent_Contig_11137 12 . T A 341.044 . AB=0.047619;ABP=114.996;AC=2;AF=0.333333;AN=6;AO=4;CIGAR=1X5M;DP=86;DPB=86;DPRA=0;EPP=11.6962;EPPR=146.327;GTI=0;LEN=1;MEANALT=1.66667;MQM=60;MQMR=54.9394;NS=3;NUMALT=2;ODDS=6.93889e-18;PAIRED=0.75;PAIREDR=0.863636;PAO=0;PQA=0;PQR=0;PRO=0;QA=153;QR=2566;RO=66;RPL=0;RPP=11.6962;RPPR=146.327;RPR=4;RUN=1;SAF=4;SAP=11.6962;SAR=0;SRF=66;SRP=146.327;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|1:43:34,8,1:34:1325:8,1:311,36:-15.346,0,-96.4957,-22.6468,-95.9664,-121.227 0|0:23:22,0,1:22:846:0,1:0,41:0,-6.62266,-72.1585,-2.82912,-68.7725,-68.4714 0|1:20:10,8,2:10:395:8,2:308,76:-22.2812,0,-30.0679,-19.0595,-26.2455,-50.9268 dDocent_Contig_11138 10 . C T 245.13 . AB=0.727273;ABP=7.94546;AC=1;AF=0.166667;AN=6;AO=8;CIGAR=1X;DP=32;DPB=32;DPRA=1.04762;EPP=20.3821;EPPR=55.1256;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=322;QR=968;RO=24;RPL=0;RPP=20.3821;RPPR=55.1256;RPR=8;RUN=1;SAF=8;SAP=20.3821;SAR=0;SRF=24;SRP=55.1256;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:11:3,8:3:120:8:322:-26.0359,0,-7.87598 0/0:11:11,0:11:446:0:0:0,-3.31133,-40.4958 0/0:10:10,0:10:402:0:0:0,-3.0103,-36.5367 dDocent_Contig_11139 19 . A G 657.773 . AB=0.28866;ABP=40.6417;AC=3;AF=0.5;AN=6;AO=28;CIGAR=1X;DP=97;DPB=97;DPRA=0;EPP=63.8115;EPPR=112.56;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=43.6957;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=0.594203;PAO=0;PQA=0;PQR=0;PRO=0;QA=1105;QR=2708;RO=69;RPL=0;RPP=63.8115;RPPR=152.842;RPR=28;RUN=1;SAF=28;SAP=63.8115;SAR=0;SRF=64;SRP=112.56;SRR=5;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:31:27,4:27:1059:4:154:-4.90166,0,-65.958 0/1:23:18,5:18:693:5:187:-10.2622,0,-39.3618 0/1:43:24,19:24:956:19:764:-56.1361,0,-60.0258 dDocent_Contig_11140 16 . C A 239.583 . AB=0.0952381;ABP=32.8939;AC=4;AF=0.666667;AN=6;AO=9;CIGAR=1X;DP=28;DPB=28;DPRA=0;EPP=22.5536;EPPR=44.2683;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=338;QR=771;RO=19;RPL=0;RPP=22.5536;RPPR=44.2683;RPR=9;RUN=1;SAF=9;SAP=22.5536;SAR=0;SRF=19;SRP=44.2683;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:13:12,1:12:484:1:40:-0.0822893,0,-39.9977 1/1:7:0,7:0:0:7:260:-23.7465,-2.10721,0 0/1:8:7,1:7:287:1:38:-1.38903,0,-23.797 dDocent_Contig_11141 16 . G A 77.6824 . AB=0;ABP=0;AC=2;AF=0.333333;AN=6;AO=2;CIGAR=1X;DP=27;DPB=27;DPRA=0.16;EPP=7.35324;EPPR=57.2971;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=80;QR=997;RO=25;RPL=0;RPP=7.35324;RPPR=57.2971;RPR=2;RUN=1;SAF=2;SAP=7.35324;SAR=0;SRF=25;SRP=57.2971;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:12:12,0:12:476:0:0:0,-3.61236,-43.1899 1/1:2:0,2:0:0:2:80:-7.59179,-0.60206,0 0/0:13:13,0:13:521:0:0:0,-3.91339,-47.2357 dDocent_Contig_11143 7 . C T 10464.4 . AB=0.718336;ABP=222.05;AC=3;AF=0.5;AN=6;AO=380;CIGAR=1X;DP=529;DPB=529;DPRA=0;EPP=828.17;EPPR=322.217;GTI=0;LEN=1;MEANALT=1.66667;MQM=51.5105;MQMR=59.9728;NS=3;NUMALT=1;ODDS=0;PAIRED=0.728947;PAIREDR=0.734694;PAO=0;PQA=0;PQR=0;PRO=0;QA=14427;QR=5608;RO=147;RPL=0;RPP=828.17;RPPR=322.217;RPR=380;RUN=1;SAF=380;SAP=828.17;SAR=0;SRF=147;SRP=322.217;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:185:49,135:49:1871:135:5146:-374.988,0,-113.144 0/1:200:61,139:61:2315:139:5222:-381.947,0,-148.362 0/1:144:37,106:37:1422:106:4059:-295.032,0,-84.9857 dDocent_Contig_11144 7 . C T 133.649 . AB=0.310345;ABP=12.0706;AC=3;AF=0.5;AN=6;AO=9;CIGAR=1X;DP=29;DPB=29;DPRA=0;EPP=22.5536;EPPR=46.4397;GTI=0;LEN=1;MEANALT=1;MQM=34.5556;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=0;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=351;QR=774;RO=20;RPL=0;RPP=22.5536;RPPR=46.4397;RPR=9;RUN=1;SAF=9;SAP=22.5536;SAR=0;SRF=20;SRP=46.4397;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:13:8,5:8:312:5:195:-11.0886,0,-24.5315 0/1:4:2,2:2:78:2:78:-4.56457,0,-6.19935 0/1:12:10,2:10:384:2:78:-3.22574,0,-31.3035 dDocent_Contig_11145 9 . A G 43.8569 . AB=0.2;ABP=14.7363;AC=1;AF=0.166667;AN=6;AO=4;CIGAR=1X;DP=43;DPB=43;DPRA=1.15385;EPP=11.6962;EPPR=87.6977;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=0.74359;PAO=0;PQA=0;PQR=0;PRO=0;QA=150;QR=1476;RO=39;RPL=0;RPP=11.6962;RPPR=87.6977;RPR=4;RUN=1;SAF=4;SAP=11.6962;SAR=0;SRF=39;SRP=87.6977;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:13:13,0:13:497:0:0:0,-3.91339,-45.0751 0/1:15:12,3:12:451:3:115:-6.20944,0,-36.4219 0/0:15:14,1:14:528:1:35:0,-1.01682,-44.3626 dDocent_Contig_11147 13 . G A 90.9113 . AB=0.131579;ABP=92.6121;AC=2;AF=0.333333;AN=6;AO=11;CIGAR=1X;DP=109;DPB=109;DPRA=0;EPP=26.8965;EPPR=209.3;GTI=0;LEN=1;MEANALT=1.33333;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=6.93889e-18;PAIRED=1;PAIREDR=0.947368;PAO=0;PQA=0;PQR=0;PRO=0;QA=422;QR=3829;RO=95;RPL=0;RPP=26.8965;RPPR=209.3;RPR=11;RUN=1;SAF=11;SAP=26.8965;SAR=0;SRF=95;SRP=209.3;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:67:56,8:56:2272:8:314:-8.96038,0,-184.97 0/1:9:7,2:7:278:2:67:-3.65041,0,-22.6811 0/0:33:32,1:32:1279:1:41:0,-5.83942,-111.282 dDocent_Contig_11148 29 . T A 2365.76 . AB=0.77;ABP=66.3304;AC=3;AF=0.5;AN=6;AO=77;CIGAR=1X2M1X;DP=100;DPB=100;DPRA=0;EPP=170.214;EPPR=52.9542;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=3003;QR=921;RO=23;RPL=0;RPP=170.214;RPPR=52.9542;RPR=77;RUN=1;SAF=77;SAP=170.214;SAR=0;SRF=23;SRP=52.9542;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|1:64:14,50:14:566:50:1943:-155.824,0,-32.0174 0|1:9:1,8:1:37:8:316:-26.0965,0,-0.988559 0|1:27:8,19:8:318:19:744:-59.1534,0,-20.8591 dDocent_Contig_11149 62 . C T 561.915 . AB=0.478261;ABP=3.19912;AC=2;AF=0.5;AN=4;AO=22;CIGAR=1X1M3X;DP=46;DPB=46;DPRA=0;EPP=50.7827;EPPR=52.9542;GTI=0;LEN=1;MEANALT=1.5;MQM=60;MQMR=60;NS=2;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=811;QR=742;RO=23;RPL=22;RPP=50.7827;RPPR=52.9542;RPR=0;RUN=1;SAF=22;SAP=50.7827;SAR=0;SRF=0;SRP=52.9542;SRR=23;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|1:34:17,16:17:539:16:597:-43.8961,0,-38.6452 .:.:.:.:.:.:.:. 0|1:12:6,6:6:203:6:214:-15.9944,0,-14.9901 dDocent_Contig_11151 37 . T C 1809.32 . AB=0.431373;ABP=9.26925;AC=3;AF=0.5;AN=6;AO=66;CIGAR=1X;DP=153;DPB=153;DPRA=0;EPP=146.327;EPPR=191.928;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=0.984848;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=2573;QR=3336;RO=87;RPL=0;RPP=146.327;RPPR=191.928;RPR=66;RUN=1;SAF=66;SAP=146.327;SAR=0;SRF=87;SRP=191.928;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:93:44,49:44:1661:49:1921:-145.114,0,-121.745 0/1:23:20,3:20:790:3:118:-4.07903,0,-64.4986 0/1:37:23,14:23:885:14:534:-37.2609,0,-68.8218 dDocent_Contig_11152 137 . A C 111.295 . AB=0.8;ABP=6.91895;AC=1;AF=0.166667;AN=6;AO=4;CIGAR=1X;DP=40;DPB=40;DPRA=0.285714;EPP=11.6962;EPPR=81.1833;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=156;QR=1404;RO=36;RPL=0;RPP=11.6962;RPPR=81.1833;RPR=4;RUN=1;SAF=0;SAP=11.6962;SAR=4;SRF=0;SRP=81.1833;SRR=36;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:26:26,0:26:999:0:0:0,-7.82678,-90.1945 0/1:5:1,4:1:40:4:156:-12.909,0,-2.49053 0/0:9:9,0:9:365:0:0:0,-2.70927,-33.2151 dDocent_Contig_11154 11 . A G 264.818 . AB=0.314286;ABP=13.4954;AC=2;AF=0.333333;AN=6;AO=11;CIGAR=1X;DP=59;DPB=59;DPRA=0.729167;EPP=26.8965;EPPR=107.241;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=0.958333;PAO=0;PQA=0;PQR=0;PRO=0;QA=442;QR=1918;RO=48;RPL=0;RPP=26.8965;RPPR=107.241;RPR=11;RUN=1;SAF=11;SAP=26.8965;SAR=0;SRF=48;SRP=107.241;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:24:24,0:24:954:0:0:0,-7.22472,-86.1563 0/1:12:4,8:4:164:8:320:-25.5553,0,-11.5375 0/1:23:20,3:20:800:3:122:-4.4488,0,-65.391 dDocent_Contig_11156 10 . C T 67.674 . AB=0.136364;ABP=53.5464;AC=2;AF=0.5;AN=4;AO=6;CIGAR=1X;DP=44;DPB=44;DPRA=0;EPP=16.0391;EPPR=85.5263;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=2;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=244;QR=1521;RO=38;RPL=0;RPP=16.0391;RPPR=85.5263;RPR=6;RUN=1;SAF=6;SAP=16.0391;SAR=0;SRF=38;SRP=85.5263;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:35:32,3:32:1279:3:121:-0.744147,0,-104.845 ./.:.:.:.:.:.:.:. 0/1:9:6,3:6:242:3:123:-8.75552,0,-19.4472 dDocent_Contig_11158 11 . A G 331.359 . AB=0.117647;ABP=46.1843;AC=3;AF=0.5;AN=6;AO=4;CIGAR=3X1M;DP=41;DPB=41;DPRA=0;EPP=11.6962;EPPR=42.0968;GTI=0;LEN=1;MEANALT=2.5;MQM=29;MQMR=60;NS=3;NUMALT=3;ODDS=0;PAIRED=0;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=116;QR=718;RO=18;RPL=0;RPP=11.6962;RPPR=42.0968;RPR=4;RUN=1;SAF=4;SAP=11.6962;SAR=0;SRF=18;SRP=42.0968;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|1:18:6,9,0,3:6:243:9,0,3:358,0,87:-25.9054,0,-17.4244,-27.7116,-20.1337,-47.7684,-21.6254,-14.067,-41.6746,-40.7715 0|1:7:5,1,1,0:5:202:1,1,0:40,31,0:-1.70223,0,-16.4331,-0.787642,-14.2911,-17.1551,-3.20738,-16.7341,-17.4561,-19.9018 0|1:16:7,4,4,1:7:273:4,4,1:161,156,29:-10.6437,0,-21.2575,-0.558965,-10.2747,-21.8094,-10.7259,-20.4336,-20.9859,-32.8678 dDocent_Contig_11159 39 . A C 915.357 . AB=0.0487805;ABP=148.022;AC=0;AF=0;AN=6;AO=4;CIGAR=1X1M1X;DP=90;DPB=90;DPRA=0;EPP=11.6962;EPPR=115.927;GTI=0;LEN=1;MEANALT=2;MQM=60;MQMR=60;NS=3;NUMALT=2;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=157;QR=2066;RO=52;RPL=0;RPP=11.6962;RPPR=115.927;RPR=4;RUN=1;SAF=4;SAP=11.6962;SAR=0;SRF=52;SRP=115.927;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|0:45:26,2,17:26:1037:2,17:81,683:-48.4508,-49.5981,-134.392,0,-78.7129,-80.2749 0|0:8:5,0,3:5:204:0,3:0,123:-9.05655,-10.5617,-27.3919,0,-17.2389,-16.3358 0|0:37:21,2,14:21:825:2,14:76,557:-39.5513,-39.6422,-106.89,0,-61.633,-63.6504 dDocent_Contig_11160 146 . T G 860.783 . AB=0.527273;ABP=3.36563;AC=2;AF=0.333333;AN=6;AO=29;CIGAR=1X;DP=62;DPB=62;DPRA=3.92857;EPP=65.983;EPPR=74.6689;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=1172;QR=1319;RO=33;RPL=0;RPP=65.983;RPPR=74.6689;RPR=29;RUN=1;SAF=0;SAP=65.983;SAR=29;SRF=0;SRP=74.6689;SRR=33;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:43:23,20:23:917:20:811:-60.3597,0,-69.8904 0/0:7:7,0:7:280:0:0:0,-2.10721,-25.5704 0/1:12:3,9:3:122:9:361:-29.2415,0,-7.76013 dDocent_Contig_11161 9 . A G 979.061 . AB=0.468354;ABP=3.69747;AC=3;AF=0.5;AN=6;AO=37;CIGAR=1X;DP=79;DPB=79;DPRA=0;EPP=83.3548;EPPR=94.2121;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=1402;QR=1595;RO=42;RPL=0;RPP=83.3548;RPPR=94.2121;RPR=37;RUN=1;SAF=37;SAP=83.3548;SAR=0;SRF=42;SRP=94.2121;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:38:18,20:18:689:20:766:-57.8269,0,-50.9033 0/1:18:12,6:12:446:6:220:-14.7359,0,-35.0637 0/1:23:12,11:12:460:11:416:-30.8662,0,-34.8265 dDocent_Contig_11167 152 . T C 72.0588 . AB=0.1;ABP=16.9077;AC=3;AF=0.5;AN=6;AO=3;CIGAR=1X;DP=18;DPB=18;DPRA=1;EPP=9.52472;EPPR=35.5824;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=4.33681e-19;PAIRED=0;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=108;QR=511;RO=15;RPL=0;RPP=9.52472;RPPR=35.5824;RPR=3;RUN=1;SAF=0;SAP=9.52472;SAR=3;SRF=0;SRP=35.5824;SRR=15;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:10:9,1:9:304:1:34:-0.388611,0,-24.6785 1/1:2:0,2:0:0:2:74:-7.02588,-0.60206,0 0/0:6:6,0:6:207:0:0:0,-1.80618,-18.9682 dDocent_Contig_11168 10 . A G 191.547 . AB=0.1875;ABP=57.2971;AC=2;AF=0.333333;AN=6;AO=12;CIGAR=1X;DP=96;DPB=96;DPRA=1;EPP=3.73412;EPPR=108.895;GTI=0;LEN=1;MEANALT=1;MQM=59.6667;MQMR=57.4286;NS=3;NUMALT=1;ODDS=0;PAIRED=0;PAIREDR=0.380952;PAO=0;PQA=0;PQR=0;PRO=0;QA=458;QR=3271;RO=84;RPL=0;RPP=29.068;RPPR=185.414;RPR=12;RUN=1;SAF=7;SAP=3.73412;SAR=5;SRF=74;SRP=108.895;SRR=10;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:32:32,0:32:1247:0:0:0,-9.63296,-112.107 0/1:37:30,7:30:1160:7:263:-12.8841,0,-92.1205 0/1:27:22,5:22:864:5:195:-9.79345,0,-69.8307 dDocent_Contig_11169 84 . G A 284.91 . AB=0.3125;ABP=17.6677;AC=3;AF=0.5;AN=6;AO=15;CIGAR=1X;DP=48;DPB=48;DPRA=0;EPP=35.5824;EPPR=74.6689;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=527;QR=1100;RO=33;RPL=15;RPP=35.5824;RPPR=74.6689;RPR=0;RUN=1;SAF=15;SAP=35.5824;SAR=0;SRF=33;SRP=74.6689;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:23:18,5:18:593:5:179:-9.53647,0,-46.7563 0/1:9:6,3:6:208:3:104:-6.99382,0,-16.3504 0/1:16:9,7:9:299:7:244:-17.4836,0,-22.4169 dDocent_Contig_11170 138 . A G 255.918 . AB=0.205882;ABP=28.557;AC=3;AF=0.5;AN=6;AO=7;CIGAR=1X3M;DP=57;DPB=57;DPRA=0;EPP=18.2106;EPPR=94.2121;GTI=0;LEN=1;MEANALT=1.5;MQM=60;MQMR=60;NS=3;NUMALT=2;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=258;QR=1445;RO=42;RPL=0;RPP=18.2106;RPPR=94.2121;RPR=7;RUN=1;SAF=0;SAP=18.2106;SAR=7;SRF=0;SRP=94.2121;SRR=42;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|1:23:18,5,0:18:626:5,0:193,0:-10.8178,0,-49.7422,-16.2363,-51.2474,-67.1063 0|1:8:4,3,1:4:132:3,1:111,37:-7.87682,0,-9.73721,-6.05393,-7.60531,-16.4023 0|1:26:20,0,6:20:687:0,6:0,221:-12.42,-18.4406,-74.2084,0,-56.1302,-54.324 dDocent_Contig_11171 26 . T G 3841.92 . AB=0.0547945;ABP=128.688;AC=0;AF=0;AN=6;AO=4;CIGAR=1X1M2X3M;DP=296;DPB=295.857;DPRA=0;EPP=3.0103;EPPR=70.5741;GTI=0;LEN=1;MEANALT=7;MQM=60;MQMR=60;NS=3;NUMALT=5;ODDS=0;PAIRED=0;PAIREDR=0.942857;PAO=0;PQA=0;PQR=0;PRO=0;QA=158;QR=1369;RO=35;RPL=0;RPP=11.6962;RPPR=79.0118;RPR=4;RUN=1;SAF=2;SAP=3.0103;SAR=2;SRF=34;SRP=70.5741;SRR=1;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|0:93:20,0,5,30,4,31:20:791:0,5,30,4,31:0,199,810,158,1230:-94.2065,-100.227,-165.341,-90.1175,-155.232,-153.727,-47.5462,-112.652,-102.549,-103.621,-87.221,-152.337,-142.228,-99.6496,-151.133,0,-65.1441,-55.0339,-12.4684,-52.136,-55.8122 0|0:130:5,0,4,47,3,46:5:186:0,4,47,3,46:0,157,1259,106,1769:-213.685,-215.19,-230.413,-207.469,-222.692,-221.488,-127.97,-143.192,-135.473,-129.044,-206.829,-222.052,-214.33,-134.832,-221.149,-72.0049,-87.2323,-79.5094,0,-78.8688,-73.3849 0|0:73:10,4,0,23,5,25:10:392:4,0,23,5,25:158,0,542,158,986:-81.823,-71.8258,-102.87,-84.8333,-104.074,-117.08,-48.6966,-67.9329,-80.9365,-74.0128,-72.9381,-92.1789,-105.185,-69.0486,-103.68,-3.8623,-23.1141,-36.126,0,-24.2281,-28.6003 dDocent_Contig_11173 123 . C A 135.974 . AB=0.368421;ABP=5.8675;AC=1;AF=0.166667;AN=6;AO=7;CIGAR=1X1M1X3M1X;DP=33;DPB=33;DPRA=2.71429;EPP=18.2106;EPPR=59.4686;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=0;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=228;QR=911;RO=26;RPL=0;RPP=18.2106;RPPR=59.4686;RPR=7;RUN=1;SAF=0;SAP=18.2106;SAR=7;SRF=0;SRP=59.4686;SRR=26;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|1:19:12,7:12:430:7:228:-15.1202,0,-33.3206 0|0:4:4,0:4:134:0:0:0,-1.20412,-12.391 0|0:10:10,0:10:347:0:0:0,-3.0103,-31.5638 dDocent_Contig_11174 8 . C T 186.931 . AB=0.3;ABP=13.4334;AC=2;AF=0.333333;AN=6;AO=10;CIGAR=1X;DP=52;DPB=52;DPRA=0;EPP=24.725;EPPR=94.2121;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=0.9;PAIREDR=0.619048;PAO=0;PQA=0;PQR=0;PRO=0;QA=377;QR=1592;RO=42;RPL=0;RPP=24.725;RPPR=94.2121;RPR=10;RUN=1;SAF=10;SAP=24.725;SAR=0;SRF=42;SRP=94.2121;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:17:14,3:14:527:3:117:-5.79287,0,-42.6524 0/0:22:21,1:21:797:1:38:0,-2.82539,-68.2584 0/1:13:7,6:7:268:6:222:-16.4231,0,-20.5704 dDocent_Contig_11175 21 . T A 2009.42 . AB=0.723077;ABP=31.1058;AC=3;AF=0.5;AN=6;AO=62;CIGAR=1X;DP=86;DPB=86;DPRA=6.66667;EPP=137.642;EPPR=55.1256;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=3.46945e-18;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=2461;QR=973;RO=24;RPL=0;RPP=137.642;RPPR=55.1256;RPR=62;RUN=1;SAF=62;SAP=137.642;SAR=0;SRF=24;SRP=55.1256;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:65:18,47:18:730:47:1856:-147.677,0,-46.4575 0/0:6:6,0:6:243:0:0:0,-1.80618,-22.248 1/1:15:0,15:0:0:15:605:-54.7879,-4.51545,0 dDocent_Contig_11176 43 . G A 595.702 . AB=0.511628;ABP=3.0608;AC=3;AF=0.5;AN=6;AO=22;CIGAR=1X;DP=43;DPB=43;DPRA=0;EPP=50.7827;EPPR=48.6112;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=855;QR=804;RO=21;RPL=0;RPP=50.7827;RPPR=48.6112;RPR=22;RUN=1;SAF=22;SAP=50.7827;SAR=0;SRF=21;SRP=48.6112;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:23:9,14:9:346:14:537:-41.7309,0,-24.5714 0/1:12:9,3:9:343:3:119:-7.48303,0,-27.6087 0/1:8:3,5:3:115:5:199:-15.8792,0,-8.31497 dDocent_Contig_11177 9 . A G 156.549 . AB=0.209302;ABP=34.5724;AC=2;AF=0.333333;AN=6;AO=9;CIGAR=1X;DP=58;DPB=58;DPRA=1.43333;EPP=22.5536;EPPR=109.412;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=348;QR=1880;RO=49;RPL=0;RPP=22.5536;RPPR=109.412;RPR=9;RUN=1;SAF=9;SAP=22.5536;SAR=0;SRF=49;SRP=109.412;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:28:25,3:25:955:3:116:-2.38886,0,-77.8341 0/0:15:15,0:15:575:0:0:0,-4.51545,-52.0919 0/1:15:9,6:9:350:6:232:-16.7335,0,-27.3459 dDocent_Contig_11178 9 . A G 168.085 . AB=0.122699;ABP=204.558;AC=1;AF=0.166667;AN=6;AO=41;CIGAR=1X;DP=501;DPB=501;DPRA=0;EPP=92.0407;EPPR=1001.89;GTI=0;LEN=1;MEANALT=1;MQM=59.4878;MQMR=58.4848;NS=3;NUMALT=1;ODDS=0;PAIRED=0.926829;PAIREDR=0.830435;PAO=0;PQA=0;PQR=0;PRO=0;QA=1559;QR=17545;RO=460;RPL=0;RPP=92.0407;RPPR=1001.89;RPR=41;RUN=1;SAF=41;SAP=92.0407;SAR=0;SRF=460;SRP=1001.89;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:250:235,15:235:8967:15:580:0,-22.7146,-748.042 0/0:88:82,6:82:3109:6:230:0,-5.42375,-257.337 0/1:163:143,20:143:5469:20:749:-18.6324,0,-439.278 dDocent_Contig_11179 103 . N A 59.1433 . AB=0;ABP=0;AC=4;AF=1;AN=4;AO=6;CIGAR=5X;DP=6;DPB=6;DPRA=0;EPP=16.0391;EPPR=0;GTI=0;LEN=1;MEANALT=1;MQM=10;MQMR=0;NS=2;NUMALT=1;ODDS=0;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=203;QR=0;RO=0;RPL=0;RPP=16.0391;RPPR=0;RPR=6;RUN=1;SAF=0;SAP=16.0391;SAR=6;SRF=0;SRP=0;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL .:.:.:.:.:.:.:. 1|1:5:0,5:0:0:5:169:-4.59249,-1.50515,0 1|1:1:0,1:0:0:1:34:-0.998447,-0.30103,0 dDocent_Contig_11180 15 . G T 444.702 . AB=0.107143;ABP=40.5458;AC=0;AF=0;AN=6;AO=3;CIGAR=3M1I6M1X;DP=99;DPB=103.5;DPRA=1.75;EPP=9.52472;EPPR=120.27;GTI=0;LEN=1;MEANALT=4;MQM=60;MQMR=60;NS=3;NUMALT=5;ODDS=0;PAIRED=0;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=113;QR=2112;RO=54;RPL=0;RPP=9.52472;RPPR=120.27;RPR=3;RUN=1;SAF=3;SAP=9.52472;SAR=0;SRF=54;SRP=120.27;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|0:55:28,9,11,0,2,4:28:1099:9,11,0,2,4:343,427,0,78,154:-26.6551,-7.27346,-94.9569,0,-62.5867,-87.0858,-35.0839,-97.6661,-90.3971,-125.477,-28.6716,-91.2544,-83.9852,-119.065,-118.463,-23.0625,-85.6443,-78.3751,-113.455,-107.043,-112.251 0|0:16:15,0,0,0,1,0:15:586:0,0,0,1,0:0,0,0,39,0:0,-4.51545,-52.6921,-4.51545,-52.6921,-52.6921,-4.51545,-52.6921,-52.6921,-52.6921,-0.919915,-49.4863,-49.4863,-49.4863,-49.1852,-4.51545,-52.6921,-52.6921,-52.6921,-49.4863,-52.6921 0|0:28:11,8,0,3,2,4:11:427:8,0,3,2,4:304,0,113,77,160:-21.3378,0,-32.6828,-24.6491,-35.0911,-59.7382,-15.3895,-25.8326,-50.4792,-49.5761,-18.3255,-28.7684,-53.4155,-44.1564,-52.8134,-12.5386,-22.9819,-47.6277,-38.369,-41.305,-46.4236 dDocent_Contig_11181 117 . G T 54.0145 . AB=0.210526;ABP=16.8392;AC=1;AF=0.166667;AN=6;AO=9;CIGAR=1X;DP=140;DPB=140;DPRA=0;EPP=22.5536;EPPR=287.473;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=47.4962;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=0.717557;PAO=0;PQA=0;PQR=0;PRO=0;QA=308;QR=4420;RO=131;RPL=0;RPP=22.5536;RPPR=287.473;RPR=9;RUN=1;SAF=0;SAP=22.5536;SAR=9;SRF=0;SRP=287.473;SRR=131;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:79:76,3:76:2582:3:100:0,-14.4508,-195.239 0/0:42:40,2:40:1328:2:68:0,-6.18533,-90.1596 0/1:19:15,4:15:510:4:140:-7.22536,0,-36.0143 dDocent_Contig_11182 70 . G T 46.4869 . AB=0.25;ABP=9.52472;AC=1;AF=0.25;AN=4;AO=3;CIGAR=1X;DP=18;DPB=18;DPRA=2;EPP=9.52472;EPPR=35.5824;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=2;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=110;QR=532;RO=15;RPL=3;RPP=9.52472;RPPR=35.5824;RPR=0;RUN=1;SAF=3;SAP=9.52472;SAR=0;SRF=15;SRP=35.5824;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:6:6,0:6:211:0:0:0,-1.80618,-19.3325 ./.:.:.:.:.:.:.:. 0/1:12:9,3:9:321:3:110:-6.64864,0,-25.6195 dDocent_Contig_11183 110 . A G 279.702 . AB=0.214876;ABP=88.4515;AC=2;AF=0.333333;AN=6;AO=26;CIGAR=1X1M1X;DP=140;DPB=140;DPRA=3.18421;EPP=59.4686;EPPR=248.387;GTI=0;LEN=1;MEANALT=1.5;MQM=30.3077;MQMR=53.6903;NS=3;NUMALT=1;ODDS=0;PAIRED=0;PAIREDR=0.318584;PAO=0;PQA=0;PQR=0;PRO=0;QA=900;QR=3876;RO=113;RPL=0;RPP=59.4686;RPPR=248.387;RPR=26;RUN=1;SAF=0;SAP=59.4686;SAR=26;SRF=0;SRP=248.387;SRR=113;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|1:83:65,17:65:2243:17:586:-20.0883,0,-164.977 0|0:19:19,0:19:646:0:0:0,-5.71957,-57.1622 0|1:38:29,9:29:987:9:314:-11.4048,0,-67.0913 dDocent_Contig_11185 24 . C T 372.983 . AB=0.225;ABP=55.5599;AC=2;AF=0.5;AN=4;AO=18;CIGAR=1X3M1X1M1X2M1X;DP=80;DPB=80;DPRA=0;EPP=42.0968;EPPR=124.613;GTI=0;LEN=1;MEANALT=3;MQM=60;MQMR=60;NS=2;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=704;QR=2133;RO=56;RPL=0;RPP=42.0968;RPPR=124.613;RPR=18;RUN=1;SAF=18;SAP=42.0968;SAR=0;SRF=56;SRP=124.613;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|1:61:42,14:42:1601:14:552:-32.7713,0,-127.088 .:.:.:.:.:.:.:. 0|1:19:14,4:14:532:4:152:-8.22599,0,-42.3943 dDocent_Contig_11187 35 . G A 871.594 . AB=0;ABP=0;AC=6;AF=1;AN=6;AO=24;CIGAR=1X;DP=24;DPB=24;DPRA=0;EPP=55.1256;EPPR=0;GTI=0;LEN=1;MEANALT=1;MQM=59.875;MQMR=0;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=951;QR=0;RO=0;RPL=0;RPP=55.1256;RPPR=0;RPR=24;RUN=1;SAF=24;SAP=55.1256;SAR=0;SRF=0;SRP=0;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 1/1:10:0,10:0:0:10:400:-36.3599,-3.0103,0 1/1:4:0,4:0:0:4:157:-14.5054,-1.20412,0 1/1:10:0,10:0:0:10:394:-35.8169,-3.0103,0 dDocent_Contig_11188 8 . C T 85.9018 . AB=0.12987;ABP=94.6352;AC=3;AF=0.5;AN=6;AO=10;CIGAR=1X;DP=77;DPB=77;DPRA=0;EPP=24.725;EPPR=148.499;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=386;QR=2592;RO=67;RPL=0;RPP=24.725;RPPR=148.499;RPR=10;RUN=1;SAF=10;SAP=24.725;SAR=0;SRF=67;SRP=148.499;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:31:27,4:27:1039:4:156:-5.08536,0,-84.4861 0/1:11:10,1:10:389:1:39:-0.585235,0,-32.057 0/1:35:30,5:30:1164:5:191:-7.02205,0,-94.5224 dDocent_Contig_11189 21 . G A 235.042 . AB=0.37037;ABP=6.95112;AC=2;AF=0.333333;AN=6;AO=10;CIGAR=1X;DP=28;DPB=28;DPRA=13.5;EPP=24.725;EPPR=42.0968;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=384;QR=721;RO=18;RPL=0;RPP=24.725;RPPR=42.0968;RPR=10;RUN=1;SAF=10;SAP=24.725;SAR=0;SRF=18;SRP=42.0968;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:7:6,1:6:243:1:41:-1.98736,0,-20.1408 0/0:1:1,0:1:40:0:0:0,-0.30103,-3.99568 0/1:20:11,9:11:438:9:343:-25.2057,0,-33.7551 dDocent_Contig_11190 25 . A G 212.831 . AB=0.30303;ABP=14.1309;AC=2;AF=0.333333;AN=6;AO=10;CIGAR=1X;DP=34;DPB=34;DPRA=16.5;EPP=24.725;EPPR=55.1256;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=378;QR=925;RO=24;RPL=0;RPP=24.725;RPPR=55.1256;RPR=10;RUN=1;SAF=10;SAP=24.725;SAR=0;SRF=24;SRP=55.1256;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:1:1,0:1:40:0:0:0,-0.30103,-3.99568 0/1:18:12,6:12:451:6:235:-16.1026,0,-35.5007 0/1:15:11,4:11:434:4:143:-8.70267,0,-34.8986 dDocent_Contig_11191 12 . A C 333.84 . AB=0.235294;ABP=44.396;AC=3;AF=0.5;AN=6;AO=16;CIGAR=1X;DP=68;DPB=68;DPRA=0;EPP=37.7539;EPPR=115.927;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=647;QR=2019;RO=52;RPL=0;RPP=37.7539;RPPR=115.927;RPR=16;RUN=1;SAF=16;SAP=37.7539;SAR=0;SRF=52;SRP=115.927;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:30:26,4:26:1013:4:162:-5.93606,0,-82.4425 0/1:10:8,2:8:317:2:82:-4.76938,0,-25.8856 0/1:28:18,10:18:689:10:403:-28.2012,0,-53.9109 dDocent_Contig_11192 34 . C T 156.416 . AB=0.181818;ABP=51.3749;AC=3;AF=0.5;AN=6;AO=10;CIGAR=1X;DP=55;DPB=55;DPRA=0;EPP=24.725;EPPR=100.727;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=399;QR=1789;RO=45;RPL=0;RPP=24.725;RPPR=100.727;RPR=10;RUN=1;SAF=10;SAP=24.725;SAR=0;SRF=45;SRP=100.727;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:21:19,2:19:762:2:82:-1.45805,0,-62.5792 0/1:16:10,6:10:398:6:236:-16.7915,0,-31.3586 0/1:18:16,2:16:629:2:81:-2.26719,0,-51.5245 dDocent_Contig_11193 7 . C T 7463.83 . AB=0.108586;ABP=529.976;AC=2;AF=0.333333;AN=6;AO=43;CIGAR=1X1M1X;DP=396;DPB=396;DPRA=0;EPP=96.3836;EPPR=83.3548;GTI=0;LEN=1;MEANALT=6.66667;MQM=52.907;MQMR=58.0541;NS=3;NUMALT=3;ODDS=0;PAIRED=0.162791;PAIREDR=0.702703;PAO=0;PQA=0;PQR=0;PRO=0;QA=1637;QR=1419;RO=37;RPL=0;RPP=96.3836;RPPR=83.3548;RPR=43;RUN=1;SAF=43;SAP=96.3836;SAR=0;SRF=37;SRP=83.3548;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 1|0:218:16,23,5,149:16:619:23,5,149:874,194,5712:-419.628,-355.483,-399.41,-408.511,-390.401,-457.857,-18.1051,0,-53.0246,-24.1044 0|0:95:13,9,13,59:13:491:9,13,59:345,493,2252:-176.049,-151.65,-186.802,-147.518,-157.066,-181.464,0,-9.5459,-5.43421,-20.1071 1|0:83:8,11,7,51:8:309:11,7,51:418,275,1926:-156.23,-124.99,-147.063,-148.172,-139.909,-171.447,-8.2681,0,-23.2214,-18.3129 dDocent_Contig_11194 115 . G A 95.2326 . AB=0.357143;ABP=5.49198;AC=1;AF=0.166667;AN=6;AO=5;CIGAR=1X;DP=31;DPB=31;DPRA=1.64706;EPP=13.8677;EPPR=57.2971;GTI=0;LEN=1;MEANALT=1;MQM=56;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=166;QR=867;RO=25;RPL=0;RPP=13.8677;RPPR=57.2971;RPR=5;RUN=1;SAF=0;SAP=13.8677;SAR=5;SRF=0;SRP=57.2971;SRR=25;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:14:9,5:9:315:5:166:-11.0461,0,-24.4743 0/0:6:5,0:5:173:0:0:0,-1.50515,-15.561 0/0:11:11,0:11:379:0:0:0,-3.31133,-34.4419 dDocent_Contig_11196 13 . T G 60.3985 . AB=0.210526;ABP=16.8392;AC=1;AF=0.166667;AN=6;AO=11;CIGAR=1X;DP=153;DPB=153;DPRA=0;EPP=26.8965;EPPR=311.359;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=424;QR=5692;RO=142;RPL=0;RPP=26.8965;RPPR=311.359;RPR=11;RUN=1;SAF=11;SAP=26.8965;SAR=0;SRF=142;SRP=311.359;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:88:83,5:83:3315:5:202:0,-7.92877,-279.828 0/1:19:15,4:15:603:4:147:-7.86376,0,-48.8888 0/0:46:44,2:44:1774:2:75:0,-6.72779,-152.751 dDocent_Contig_11198 123 . T C 331.263 . AB=0.0740741;ABP=45.5551;AC=2;AF=0.333334;AN=6;AO=2;CIGAR=1X9M;DP=73;DPB=73;DPRA=0;EPP=7.35324;EPPR=17.2236;GTI=0;LEN=1;MEANALT=10;MQM=60;MQMR=57.5;NS=3;NUMALT=9;ODDS=0;PAIRED=0;PAIREDR=0.772727;PAO=0;PQA=0;PQR=0;PRO=0;QA=82;QR=779;RO=22;RPL=0;RPP=7.35324;RPPR=50.7827;RPR=2;RUN=1;SAF=2;SAP=7.35324;SAR=0;SRF=5;SRP=17.2236;SRR=17;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|0:33:13,2,5,0,1,0,11,0,0,0:13:472:2,5,0,1,0,11,0,0,0:32,123,0,24,0,256,0,0,0:-12.8592,-15.034,-52.8665,-8.55245,-45.2653,-45.4954,-16.7726,-53.4686,-47.0005,-55.2061,-15.1831,-51.8818,-45.4139,-53.6189,-53.3179,-16.7726,-53.4686,-47.0005,-55.2061,-53.6189,-55.2061,0,-36.7405,-30.2787,-38.4704,-36.8854,-38.4704,-35.1591,-16.7726,-53.4686,-47.0005,-55.2061,-53.6189,-55.2061,-38.4704,-55.2061,-16.7726,-53.4686,-47.0005,-55.2061,-53.6189,-55.2061,-38.4704,-55.2061,-55.2061,-16.7726,-53.4686,-47.0005,-55.2061,-53.6189,-55.2061,-38.4704,-55.2061,-55.2061,-55.2061 0|0:13:8,0,1,0,0,0,2,0,0,0:8:272:0,1,0,0,0,2,0,0,0:0,19,0,0,0,48,0,0,0:-0.802677,-3.21092,-25.3849,-2.07038,-24.2536,-23.9526,-3.21092,-25.3849,-24.2536,-25.3849,-3.21092,-25.3849,-24.2536,-25.3849,-25.3849,-3.21092,-25.3849,-24.2536,-25.3849,-25.3849,-25.3849,0,-22.2183,-21.0899,-22.2183,-22.2183,-22.2183,-21.6162,-3.21092,-25.3849,-24.2536,-25.3849,-25.3849,-25.3849,-22.2183,-25.3849,-3.21092,-25.3849,-24.2536,-25.3849,-25.3849,-25.3849,-22.2183,-25.3849,-25.3849,-3.21092,-25.3849,-24.2536,-25.3849,-25.3849,-25.3849,-22.2183,-25.3849,-25.3849,-25.3849 1|1:27:1,1,2,2,2,9,2,3,2,2:1:35:1,2,2,2,9,2,3,2,2:16,43,77,71,280,48,120,74,82:-23.6963,-23.1297,-25.6795,-21.2746,-23.2585,-23.5234,-17.6652,-19.6491,-17.7937,-19.9147,-18.2055,-20.1894,-18.3342,-14.724,-20.455,-3.93386,-5.92152,-4.06688,-0.449161,-0.990764,-4.07766,-20.8242,-22.8081,-20.9533,-17.3432,-17.8837,-3.61545,-23.0731,-23.0362,-25.0204,-23.1668,-19.5558,-20.0964,-5.83836,-22.7162,-24.9834,-17.9349,-19.9188,-18.0635,-14.4534,-14.9938,-0.719509,-17.613,-19.8257,-20.1844,-17.217,-19.2009,-17.3455,-13.7354,-14.2758,0,-16.895,-19.1075,-14.0051,-19.4667 dDocent_Contig_11200 117 . C A 1361.34 . AB=0.721519;ABP=36.6819;AC=2;AF=0.5;AN=4;AO=57;CIGAR=2X1M1X2M1X;DP=79;DPB=79;DPRA=0;EPP=126.784;EPPR=48.6112;GTI=0;LEN=1;MEANALT=1.5;MQM=40;MQMR=60;NS=2;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=1855;QR=695;RO=21;RPL=0;RPP=126.784;RPPR=48.6112;RPR=57;RUN=1;SAF=0;SAP=126.784;SAR=57;SRF=0;SRP=48.6112;SRR=21;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|1:56:10,45:10:336:45:1455:-111.367,0,-13.9159 .:.:.:.:.:.:.:. 0|1:23:11,12:11:359:12:400:-28.4666,0,-25.7026 dDocent_Contig_11201 113 . G A 30.3101 . AB=0.285714;ABP=5.80219;AC=1;AF=0.25;AN=4;AO=2;CIGAR=1X;DP=12;DPB=12;DPRA=1.4;EPP=7.35324;EPPR=24.725;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=2;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=72;QR=358;RO=10;RPL=0;RPP=7.35324;RPPR=24.725;RPR=2;RUN=1;SAF=0;SAP=7.35324;SAR=2;SRF=0;SRP=24.725;SRR=10;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:7:5,2:5:180:2:72:-4.72951,0,-14.4449 ./.:.:.:.:.:.:.:. 0/0:5:5,0:5:178:0:0:0,-1.50515,-16.3686 dDocent_Contig_11202 14 . T A 254.835 . AB=0.178571;ABP=78.3914;AC=2;AF=0.333333;AN=6;AO=18;CIGAR=1X;DP=182;DPB=182;DPRA=0;EPP=42.0968;EPPR=359.132;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=718;QR=6570;RO=164;RPL=0;RPP=42.0968;RPPR=359.132;RPR=18;RUN=1;SAF=18;SAP=42.0968;SAR=0;SRF=164;SRP=359.132;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:98:95,3:95:3793:3:123:0,-18.0362,-329.896 0/1:13:11,2:11:448:2:82:-3.86629,0,-36.7626 0/1:71:58,13:58:2329:13:513:-25.1382,0,-188.388 dDocent_Contig_11203 23 . C T 210.911 . AB=0.183333;ABP=55.2704;AC=1;AF=0.166667;AN=6;AO=12;CIGAR=1X;DP=99;DPB=99;DPRA=5.6875;EPP=29.068;EPPR=191.928;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=487;QR=3527;RO=87;RPL=0;RPP=29.068;RPPR=191.928;RPR=12;RUN=1;SAF=12;SAP=29.068;SAR=0;SRF=87;SRP=191.928;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:60:49,11:49:1986:11:448:-22.614,0,-160.862 0/0:8:8,0:8:322:0:0:0,-2.40824,-29.3481 0/0:31:30,1:30:1219:1:39:0,-5.43537,-106.082 dDocent_Contig_11207 9 . T C 266.701 . AB=0.15;ABP=24.2907;AC=0;AF=0;AN=6;AO=3;CIGAR=1X2M2X1M;DP=47;DPB=47;DPRA=0;EPP=9.52472;EPPR=65.983;GTI=0;LEN=1;MEANALT=2;MQM=44;MQMR=60;NS=3;NUMALT=4;ODDS=0;PAIRED=0;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=120;QR=1113;RO=29;RPL=0;RPP=9.52472;RPPR=65.983;RPR=3;RUN=1;SAF=3;SAP=9.52472;SAR=0;SRF=29;SRP=65.983;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|0:20:9,3,0,0,8:9:347:3,0,0,8:120,0,0,327:-23.0744,-16.2814,-43.8664,-25.7837,-44.7695,-54.2731,-25.7837,-44.7695,-54.2731,-54.2731,0,-18.9872,-28.4913,-28.4913,-26.083 0|0:16:12,0,0,4,0:12:451:0,0,4,0:0,0,161,0:-7.1153,-10.7277,-47.7135,-10.7277,-47.7135,-47.7135,0,-37.3216,-37.3216,-36.1175,-10.7277,-47.7135,-47.7135,-37.3216,-47.7135 0|0:11:8,0,2,1,0:8:315:0,2,1,0:0,36,41,0:-0.261045,-2.66928,-28.7185,-0.68256,-26.659,-26.057,0,-26.109,-24.0553,-25.8079,-2.66928,-28.7185,-26.659,-26.109,-28.7185 dDocent_Contig_11208 1 . N G 102.769 . AB=0;ABP=0;AC=2;AF=1;AN=2;AO=3;CIGAR=1X;DP=3;DPB=3;DPRA=0;EPP=9.52472;EPPR=0;GTI=0;LEN=1;MEANALT=1;MQM=49;MQMR=0;NS=1;NUMALT=1;ODDS=6.68461;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=111;QR=0;RO=0;RPL=0;RPP=9.52472;RPPR=0;RPR=3;RUN=1;SAF=3;SAP=9.52472;SAR=0;SRF=0;SRP=0;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 1/1:3:0,3:0:0:3:111:-10.2763,-0.90309,0 ./.:.:.:.:.:.:.:. ./.:.:.:.:.:.:.:. dDocent_Contig_11209 12 . C T 486.047 . AB=0.625;ABP=10.6105;AC=1;AF=0.166667;AN=6;AO=38;CIGAR=1X1M1X;DP=85;DPB=85;DPRA=5.57143;EPP=85.5263;EPPR=105.07;GTI=0;LEN=1;MEANALT=1;MQM=21.1579;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=0;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=1530;QR=1869;RO=47;RPL=0;RPP=85.5263;RPPR=105.07;RPR=38;RUN=1;SAF=38;SAP=85.5263;SAR=0;SRF=47;SRP=105.07;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|1:56:21,35:21:839:35:1408:-50.1274,0,-58.9684 0|0:7:7,0:7:277:0:0:0,-2.10721,-25.2992 0|0:22:19,3:19:753:3:122:0,-1.03588,-62.5066 dDocent_Contig_11211 19 . C T 606.178 . AB=0.242424;ABP=41.044;AC=0;AF=0;AN=6;AO=16;CIGAR=1X2M1X;DP=66;DPB=66;DPRA=0;EPP=37.7539;EPPR=61.6401;GTI=0;LEN=1;MEANALT=2;MQM=49;MQMR=60;NS=3;NUMALT=2;ODDS=0;PAIRED=0.6875;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=634;QR=1060;RO=27;RPL=0;RPP=37.7539;RPPR=61.6401;RPR=16;RUN=1;SAF=16;SAP=37.7539;SAR=0;SRF=27;SRP=61.6401;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|0:38:14,10,14:14:556:10,14:402,547:-40.7545,-13.711,-56.4755,0,-14.5256,-41.5665 0|0:18:10,4,4:10:384:4,4:159,159:-10.0934,-1.04202,-31.3454,0,-19.4561,-30.3235 0|0:10:3,2,5:3:120:2,5:73,195:-15.2798,-13.7964,-23.0831,0,-7.66574,-8.51791 dDocent_Contig_11214 21 . T C 276.285 . AB=0.588235;ABP=4.1599;AC=2;AF=0.333333;AN=6;AO=10;CIGAR=1M9D3M1X;DP=30;DPB=23.5714;DPRA=0.653846;EPP=24.725;EPPR=44.2683;GTI=0;LEN=1;MEANALT=1.5;MQM=53;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=0;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=394;QR=747;RO=19;RPL=0;RPP=24.725;RPPR=44.2683;RPR=10;RUN=1;SAF=10;SAP=24.725;SAR=0;SRF=19;SRP=44.2683;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|0:13:13,0:13:511:0:0:0,-3.91339,-46.3392 0|1:10:5,4:5:197:4:158:-11.4368,0,-14.9986 0|1:7:1,6:1:39:6:236:-19.4228,0,-1.78935 dDocent_Contig_11215 148 . C T 71.0716 . AB=0;ABP=0;AC=2;AF=0.333333;AN=6;AO=2;CIGAR=1X;DP=27;DPB=27;DPRA=0.16;EPP=7.35324;EPPR=57.2971;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=0.5;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=73;QR=842;RO=25;RPL=0;RPP=7.35324;RPPR=57.2971;RPR=2;RUN=1;SAF=0;SAP=7.35324;SAR=2;SRF=0;SRP=57.2971;SRR=25;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:10:10,0:10:360:0:0:0,-3.0103,-32.7438 0/0:15:15,0:15:482:0:0:0,-4.51545,-43.6854 1/1:2:0,2:0:0:2:73:-6.9307,-0.60206,0 dDocent_Contig_11216 50 . C T 41.6323 . AB=0.10989;ABP=123.3;AC=2;AF=0.333333;AN=6;AO=14;CIGAR=1X4M;DP=174;DPB=174;DPRA=0;EPP=33.4109;EPPR=333.074;GTI=0;LEN=1;MEANALT=1.66667;MQM=60;MQMR=60;NS=3;NUMALT=2;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=519;QR=5321;RO=152;RPL=14;RPP=33.4109;RPPR=333.074;RPR=0;RUN=1;SAF=14;SAP=33.4109;SAR=0;SRF=152;SRP=333.074;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|0:83:79,0,4:79:2826:0,4:0,156:0,-23.7814,-254.177,-10.5682,-241.352,-240.148 0|1:26:21,2,3:21:760:2,3:74,117:-3.30793,-3.58347,-64.9981,0,-55.979,-61.1307 0|1:65:52,6,7:52:1735:6,7:210,246:-4.37027,-2.93813,-141.557,0,-123.338,-138.319 dDocent_Contig_11218 17 . T C 54.6054 . AB=0.181818;ABP=22.3561;AC=2;AF=0.333333;AN=6;AO=4;CIGAR=1X;DP=33;DPB=33;DPRA=1;EPP=11.6962;EPPR=65.983;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=161;QR=1138;RO=29;RPL=0;RPP=11.6962;RPPR=65.983;RPR=4;RUN=1;SAF=4;SAP=11.6962;SAR=0;SRF=29;SRP=65.983;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:11:11,0:11:435:0:0:0,-3.31133,-39.5035 0/1:8:7,1:7:269:1:38:-1.38903,0,-22.1631 0/1:14:11,3:11:434:3:123:-7.25037,0,-35.1936 dDocent_Contig_11219 73 . T C 807.673 . AB=0.270492;ABP=58.8278;AC=4;AF=0.666667;AN=6;AO=36;CIGAR=1X;DP=125;DPB=125;DPRA=0;EPP=81.1833;EPPR=196.271;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=6.93889e-18;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=1333;QR=3106;RO=89;RPL=36;RPP=81.1833;RPPR=196.271;RPR=0;RUN=1;SAF=36;SAP=81.1833;SAR=0;SRF=89;SRP=196.271;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:80:65,15:65:2299:15:554:-26.1093,0,-183.058 1/1:3:0,3:0:0:3:117:-10.9104,-0.90309,0 0/1:42:24,18:24:807:18:662:-47.2703,0,-60.2923 dDocent_Contig_11220 25 . G A 197.977 . AB=0.171429;ABP=68.6508;AC=3;AF=0.5;AN=6;AO=12;CIGAR=1X;DP=70;DPB=70;DPRA=0;EPP=29.068;EPPR=128.956;GTI=0;LEN=1;MEANALT=1;MQM=57.75;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=0;PAIREDR=0.965517;PAO=0;PQA=0;PQR=0;PRO=0;QA=482;QR=2311;RO=58;RPL=0;RPP=29.068;RPPR=128.956;RPR=12;RUN=1;SAF=12;SAP=29.068;SAR=0;SRF=58;SRP=128.956;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:43:36,7:36:1451:7:280:-12.6264,0,-117.891 0/1:14:10,4:10:377:4:162:-10.6926,0,-30.0582 0/1:13:12,1:12:483:1:40:-0.0534178,0,-39.9082 dDocent_Contig_11221 10 . T A 384.537 . AB=0.265625;ABP=33.5466;AC=3;AF=0.5;AN=6;AO=17;CIGAR=2X;DP=64;DPB=64;DPRA=0;EPP=39.9253;EPPR=105.07;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=690;QR=1860;RO=47;RPL=0;RPP=39.9253;RPPR=105.07;RPR=17;RUN=1;SAF=17;SAP=39.9253;SAR=0;SRF=47;SRP=105.07;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|1:38:29,9:29:1130:9:365:-21.7757,0,-90.5366 0|1:19:13,6:13:527:6:243:-16.5284,0,-42.057 0|1:7:5,2:5:203:2:82:-5.67247,0,-16.5458 dDocent_Contig_11222 26 . G T 38.8408 . AB=0.5;ABP=3.0103;AC=1;AF=0.166667;AN=6;AO=5;CIGAR=1X1M1X2M1X;DP=44;DPB=44;DPRA=1.7;EPP=13.8677;EPPR=85.5263;GTI=0;LEN=1;MEANALT=1.5;MQM=22.8;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=0;PAIREDR=0.815789;PAO=0;PQA=0;PQR=0;PRO=0;QA=201;QR=1507;RO=38;RPL=0;RPP=13.8677;RPPR=85.5263;RPR=5;RUN=1;SAF=5;SAP=13.8677;SAR=0;SRF=38;SRP=85.5263;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|0:26:24,1:24:952:1:40:0,-5.26168,-83.3407 0|1:8:4,4:4:159:4:161:-5.70793,0,-12.2839 0|0:10:10,0:10:396:0:0:0,-3.0103,-35.9988 dDocent_Contig_11223 154 . T A 184.348 . AB=0.232558;ABP=29.7245;AC=2;AF=0.333333;AN=6;AO=10;CIGAR=1X;DP=45;DPB=45;DPRA=10.75;EPP=24.725;EPPR=79.0118;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=378;QR=1382;RO=35;RPL=0;RPP=24.725;RPPR=79.0118;RPR=10;RUN=1;SAF=0;SAP=24.725;SAR=10;SRF=0;SRP=79.0118;SRR=35;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:36:27,9:27:1064:9:337:-19.8356,0,-85.2106 0/0:2:2,0:2:77:0:0:0,-0.60206,-7.3082 0/1:7:6,1:6:241:1:41:-1.98736,0,-19.9595 dDocent_Contig_11224 7 . C T 373.741 . AB=0.464286;ABP=3.32051;AC=3;AF=0.5;AN=6;AO=13;CIGAR=2X4M;DP=35;DPB=35;DPRA=2;EPP=31.2394;EPPR=46.4397;GTI=0;LEN=1;MEANALT=1.5;MQM=60;MQMR=60;NS=3;NUMALT=2;ODDS=3.46945e-18;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=502;QR=771;RO=20;RPL=0;RPP=31.2394;RPPR=46.4397;RPR=13;RUN=1;SAF=13;SAP=31.2394;SAR=0;SRF=20;SRP=46.4397;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|1:20:12,0,8:12:459:0,8:0,309:-22.1525,-25.7649,-63.4271,0,-38.0467,-35.6384 0|0:7:7,0,0:7:272:0,0:0,0:0,-2.10721,-24.8472,-2.10721,-24.8472,-24.8472 1|1:8:1,2,5:1:40:2,5:79,193:-18.7442,-12.5417,-15.237,-3.20092,0,-4.99251 dDocent_Contig_11225 24 . T C 3324.8 . AB=0.748201;ABP=77.3871;AC=3;AF=0.5;AN=6;AO=104;CIGAR=1X;DP=139;DPB=139;DPRA=0;EPP=228.843;EPPR=79.0118;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=0.971154;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=4203;QR=1334;RO=35;RPL=0;RPP=228.843;RPPR=79.0118;RPR=104;RUN=1;SAF=104;SAP=228.843;SAR=0;SRF=35;SRP=79.0118;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:88:22,66:22:848:66:2667:-213.651,0,-50.1424 0/1:9:1,8:1:39:8:316:-26.0934,0,-1.18729 0/1:42:12,30:12:447:30:1220:-97.4245,0,-27.9283 dDocent_Contig_11226 9 . T G 156.201 . AB=0.189655;ABP=51.5315;AC=3;AF=0.5;AN=6;AO=11;CIGAR=1X;DP=58;DPB=58;DPRA=0;EPP=26.8965;EPPR=105.07;GTI=0;LEN=1;MEANALT=1;MQM=57;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=422;QR=1809;RO=47;RPL=0;RPP=26.8965;RPPR=105.07;RPR=11;RUN=1;SAF=11;SAP=26.8965;SAR=0;SRF=47;SRP=105.07;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:31:24,7:24:924:7:269:-14.3759,0,-74.1414 0/1:20:17,3:17:652:3:115:-4.70113,0,-52.9949 0/1:7:6,1:6:233:1:38:-1.69006,0,-19.2329 dDocent_Contig_11227 6 . C A 68.2378 . AB=0;ABP=0;AC=2;AF=0.333333;AN=6;AO=2;CIGAR=1X;DP=39;DPB=39;DPRA=0.108108;EPP=7.35324;EPPR=83.3548;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=0;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=70;QR=1438;RO=37;RPL=0;RPP=7.35324;RPPR=83.3548;RPR=2;RUN=1;SAF=0;SAP=7.35324;SAR=2;SRF=37;SRP=83.3548;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:21:21,0:21:816:0:0:0,-6.32163,-73.7651 1/1:2:0,2:0:0:2:70:-6.64733,-0.60206,0 0/0:16:16,0:16:622:0:0:0,-4.81648,-56.3201 dDocent_Contig_11228 3 . A G 66.4848 . AB=0;ABP=0;AC=2;AF=1;AN=2;AO=2;CIGAR=4I1X1M1X;DP=2;DPB=4.66667;DPRA=0;EPP=7.35324;EPPR=0;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=0;NS=1;NUMALT=1;ODDS=5.99146;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=70;QR=0;RO=0;RPL=0;RPP=7.35324;RPPR=0;RPR=2;RUN=1;SAF=2;SAP=7.35324;SAR=0;SRF=0;SRP=0;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL .:.:.:.:.:.:.:. 1|1:2:0,2:0:0:2:70:-6.6474,-0.60206,0 .:.:.:.:.:.:.:. dDocent_Contig_11229 48 . T G 106.196 . AB=0.24;ABP=17.6895;AC=2;AF=0.333333;AN=6;AO=6;CIGAR=1X;DP=32;DPB=32;DPRA=1.78571;EPP=16.0391;EPPR=59.4686;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=226;QR=1034;RO=26;RPL=0;RPP=16.0391;RPPR=59.4686;RPR=6;RUN=1;SAF=6;SAP=16.0391;SAR=0;SRF=26;SRP=59.4686;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:19:17,2:17:674:2:72:-1.11475,0,-55.2662 0/1:6:2,4:2:81:4:154:-12.425,0,-5.87955 0/0:7:7,0:7:279:0:0:0,-2.10721,-25.4795 dDocent_Contig_11230 36 . T A 152.602 . AB=0.225806;ABP=23.254;AC=1;AF=0.166667;AN=6;AO=8;CIGAR=1X;DP=58;DPB=58;DPRA=9.16667;EPP=20.3821;EPPR=111.584;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=324;QR=2012;RO=50;RPL=0;RPP=20.3821;RPPR=111.584;RPR=8;RUN=1;SAF=8;SAP=20.3821;SAR=0;SRF=50;SRP=111.584;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:31:24,7:24:968:7:286:-16.7829,0,-78.0877 0/0:3:3,0:3:121:0:0:0,-0.90309,-11.28 0/0:24:23,1:23:923:1:38:0,-3.42745,-79.5769 dDocent_Contig_11231 115 . C T 1336.46 . AB=0.537736;ABP=4.32138;AC=2;AF=0.333333;AN=6;AO=57;CIGAR=1X;DP=112;DPB=112;DPRA=8.83333;EPP=126.784;EPPR=122.441;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=1872;QR=1839;RO=55;RPL=0;RPP=126.784;RPPR=122.441;RPR=57;RUN=1;SAF=0;SAP=126.784;SAR=57;SRF=0;SRP=122.441;SRR=55;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:74:32,42:32:1081:42:1385:-102.662,0,-75.3185 0/0:6:6,0:6:203:0:0:0,-1.80618,-18.6022 0/1:32:17,15:17:555:15:487:-34.5062,0,-40.6263 dDocent_Contig_11232 9 . T C 170.668 . AB=0.186441;ABP=53.3958;AC=2;AF=0.333333;AN=6;AO=12;CIGAR=1X;DP=96;DPB=96;DPRA=0;EPP=29.068;EPPR=185.414;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=3.46945e-18;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=455;QR=3218;RO=84;RPL=0;RPP=29.068;RPPR=185.414;RPR=12;RUN=1;SAF=12;SAP=29.068;SAR=0;SRF=84;SRP=185.414;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:32:26,6:26:997:6:223:-10.7933,0,-80.4087 0/1:27:22,5:22:847:5:195:-9.79639,0,-68.4237 0/0:37:36,1:36:1374:1:37:0,-7.44028,-120.245 dDocent_Contig_11233 30 . T A 71.4797 . AB=0.2;ABP=18.6449;AC=1;AF=0.166667;AN=6;AO=5;CIGAR=1X;DP=60;DPB=60;DPRA=3.25;EPP=13.8677;EPPR=122.441;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=0.981818;PAO=0;PQA=0;PQR=0;PRO=0;QA=200;QR=2103;RO=55;RPL=0;RPP=13.8677;RPPR=122.441;RPR=5;RUN=1;SAF=5;SAP=13.8677;SAR=0;SRF=55;SRP=122.441;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:20:16,4:16:616:4:159:-8.67084,0,-49.7548 0/0:32:31,1:31:1189:1:41:0,-5.53839,-103.205 0/0:8:8,0:8:298:0:0:0,-2.40824,-27.1688 dDocent_Contig_11235 21 . A G 160.057 . AB=0.108808;ABP=259.548;AC=3;AF=0.5;AN=6;AO=21;CIGAR=1X;DP=193;DPB=193;DPRA=0;EPP=48.6112;EPPR=374.332;GTI=0;LEN=1;MEANALT=1.33333;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=0.0952381;PAIREDR=0.994152;PAO=0;PQA=0;PQR=0;PRO=0;QA=854;QR=6850;RO=171;RPL=0;RPP=48.6112;RPPR=374.332;RPR=21;RUN=1;SAF=21;SAP=48.6112;SAR=0;SRF=171;SRP=374.332;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:97:89,8:89:3591:8:326:-0.509961,0,-294.003 0/1:23:17,5:17:663:5:204:-11.9701,0,-53.2609 0/1:73:65,8:65:2596:8:324:-7.5538,0,-211.794 dDocent_Contig_11236 18 . A T 327.432 . AB=0.296296;ABP=22.4731;AC=3;AF=0.5;AN=6;AO=16;CIGAR=1X1M1I1X1M1X1M2X;DP=54;DPB=56.125;DPRA=0;EPP=37.7539;EPPR=81.1833;GTI=0;LEN=1;MEANALT=1.66667;MQM=48.4375;MQMR=60;NS=3;NUMALT=1;ODDS=3.46945e-18;PAIRED=0.4375;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=614;QR=1414;RO=36;RPL=0;RPP=37.7539;RPPR=81.1833;RPR=16;RUN=1;SAF=16;SAP=37.7539;SAR=0;SRF=36;SRP=81.1833;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|1:12:5,7:5:199:7:270:-20.2185,0,-14.6762 0|1:24:19,5:19:743:5:193:-9.15219,0,-59.9736 0|1:18:12,4:12:472:4:151:-8.89538,0,-37.8048 dDocent_Contig_11237 65 . T A 102.225 . AB=0.241379;ABP=19.8579;AC=2;AF=0.333333;AN=6;AO=7;CIGAR=1X;DP=51;DPB=51;DPRA=0.659091;EPP=18.2106;EPPR=98.5551;GTI=0;LEN=1;MEANALT=1;MQM=40.8571;MQMR=54.0682;NS=3;NUMALT=1;ODDS=0;PAIRED=0;PAIREDR=0.318182;PAO=0;PQA=0;PQR=0;PRO=0;QA=255;QR=1696;RO=44;RPL=7;RPP=18.2106;RPPR=98.5551;RPR=0;RUN=1;SAF=7;SAP=18.2106;SAR=0;SRF=44;SRP=98.5551;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:22:22,0:22:843:0:0:0,-6.62266,-75.8838 0/1:15:13,2:13:503:2:70:-1.97231,0,-41.021 0/1:14:9,5:9:350:5:185:-11.9283,0,-27.4081 dDocent_Contig_11238 7 . C T 213.706 . AB=0.25641;ABP=23.1103;AC=2;AF=0.333333;AN=6;AO=11;CIGAR=1X;DP=56;DPB=56;DPRA=0;EPP=26.8965;EPPR=100.727;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=421;QR=1721;RO=45;RPL=0;RPP=26.8965;RPPR=100.727;RPR=11;RUN=1;SAF=11;SAP=26.8965;SAR=0;SRF=45;SRP=100.727;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:28:19,9:19:725:9:344:-22.889,0,-57.1507 0/0:17:16,1:16:607:1:39:0,-1.22095,-51.0709 0/1:11:10,1:10:389:1:38:-0.485939,0,-32.057 dDocent_Contig_11239 12 . G T 40.3758 . AB=0.166667;ABP=20.3821;AC=1;AF=0.166667;AN=6;AO=3;CIGAR=1X;DP=81;DPB=81;DPRA=0.571429;EPP=9.52472;EPPR=172.385;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=121;QR=3150;RO=78;RPL=0;RPP=9.52472;RPPR=172.385;RPR=3;RUN=1;SAF=3;SAP=9.52472;SAR=0;SRF=78;SRP=172.385;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:44:44,0:44:1781:0:0:0,-13.2453,-160.497 0/0:19:19,0:19:767:0:0:0,-5.71957,-69.3496 0/1:18:15,3:15:602:3:121:-5.86145,0,-49.1007 dDocent_Contig_11240 13 . T C 3293.2 . 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C T 1514.88 . AB=0.627451;ABP=10.206;AC=4;AF=0.666667;AN=6;AO=50;CIGAR=1X;DP=70;DPB=70;DPRA=0;EPP=111.584;EPPR=46.4397;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=1925;QR=758;RO=20;RPL=0;RPP=111.584;RPPR=46.4397;RPR=50;RUN=1;SAF=50;SAP=111.584;SAR=0;SRF=20;SRP=46.4397;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 1/1:19:1,18:1:39:18:698:-59.2576,-1.82301,0 0/1:17:9,8:9:334:8:303:-22.511,0,-25.2909 0/1:34:10,24:10:385:24:924:-73.2421,0,-24.7712 dDocent_Contig_11242 20 . G A 556.869 . 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AB=0.296296;ABP=12.7417;AC=2;AF=0.5;AN=4;AO=8;CIGAR=1X;DP=27;DPB=27;DPRA=0;EPP=20.3821;EPPR=44.2683;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=2;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=322;QR=739;RO=19;RPL=8;RPP=20.3821;RPPR=44.2683;RPR=0;RUN=1;SAF=0;SAP=20.3821;SAR=8;SRF=0;SRP=44.2683;SRR=19;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:12:6,6:6:223:6:240:-18.3615,0,-16.8138 ./.:.:.:.:.:.:.:. 0/1:15:13,2:13:516:2:82:-3.26423,0,-42.2719 dDocent_Contig_11245 17 . A T 144.043 . 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AB=0.15;ABP=24.2907;AC=1;AF=0.166667;AN=6;AO=3;CIGAR=1X;DP=31;DPB=31;DPRA=3.63636;EPP=9.52472;EPPR=63.8115;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=122;QR=1134;RO=28;RPL=0;RPP=9.52472;RPPR=63.8115;RPR=3;RUN=1;SAF=3;SAP=9.52472;SAR=0;SRF=28;SRP=63.8115;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:20:17,3:17:688:3:122:-5.35189,0,-56.2287 0/0:8:8,0:8:324:0:0:0,-2.40824,-29.5288 0/0:3:3,0:3:122:0:0:0,-0.90309,-11.3725 dDocent_Contig_11247 67 . A G 113.467 . 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T C 1063.51 . AB=0.584615;ABP=7.05258;AC=3;AF=0.5;AN=6;AO=38;CIGAR=1X;DP=65;DPB=65;DPRA=0;EPP=85.5263;EPPR=61.6401;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=1449;QR=1058;RO=27;RPL=38;RPP=85.5263;RPPR=61.6401;RPR=0;RUN=1;SAF=38;SAP=85.5263;SAR=0;SRF=27;SRP=61.6401;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:26:13,13:13:527:13:487:-36.3343,0,-39.9503 0/1:8:2,6:2:80:6:238:-19.3835,0,-5.18355 0/1:31:12,19:12:451:19:724:-56.1564,0,-31.6002 dDocent_Contig_11250 13 . T G 258.967 . AB=0.344828;ABP=9.07545;AC=1;AF=0.166667;AN=6;AO=13;CIGAR=1X;DP=75;DPB=75;DPRA=3.25;EPP=31.2394;EPPR=137.642;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=3.46945e-18;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=515;QR=2484;RO=62;RPL=0;RPP=31.2394;RPPR=137.642;RPR=13;RUN=1;SAF=13;SAP=31.2394;SAR=0;SRF=62;SRP=137.642;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:36:33,3:33:1316:3:114:0,-0.206991,-108.07 0/1:29:19,10:19:760:10:401:-27.7197,0,-59.9899 0/0:10:10,0:10:408:0:0:0,-3.0103,-37.0806 dDocent_Contig_11251 15 . A G 161.213 . AB=0.318182;ABP=9.32731;AC=2;AF=0.333333;AN=6;AO=9;CIGAR=1X;DP=73;DPB=73;DPRA=0;EPP=22.5536;EPPR=141.985;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=3.46945e-18;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=366;QR=2567;RO=64;RPL=0;RPP=22.5536;RPPR=141.985;RPR=9;RUN=1;SAF=9;SAP=22.5536;SAR=0;SRF=64;SRP=141.985;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:51:49,2:49:1966:2:81:0,-7.6668,-169.453 0/1:7:6,1:6:243:1:41:-1.98736,0,-20.1408 0/1:15:9,6:9:358:6:244:-17.8234,0,-28.0658 dDocent_Contig_11252 22 . T C 77.4838 . AB=0.148936;ABP=53.3238;AC=2;AF=0.333333;AN=6;AO=9;CIGAR=1X;DP=100;DPB=100;DPRA=0;EPP=22.5536;EPPR=200.614;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=354;QR=3450;RO=91;RPL=0;RPP=22.5536;RPPR=200.614;RPR=9;RUN=1;SAF=9;SAP=22.5536;SAR=0;SRF=91;SRP=200.614;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:53:51,2:51:1908:2:80:0,-8.36301,-164.367 0/1:13:10,3:10:390:3:119:-7.18162,0,-31.5433 0/1:34:30,4:30:1152:4:155:-4.08845,0,-93.7406 dDocent_Contig_11253 74 . C A 58.5974 . AB=0.166667;ABP=26.1727;AC=1;AF=0.25;AN=4;AO=4;CIGAR=1X;DP=38;DPB=38;DPRA=1.71429;EPP=11.6962;EPPR=76.8404;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=2;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=160;QR=1336;RO=34;RPL=4;RPP=11.6962;RPPR=76.8404;RPR=0;RUN=1;SAF=4;SAP=11.6962;SAR=0;SRF=34;SRP=76.8404;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:24:20,4:20:793:4:160:-7.55871,0,-64.4643 ./.:.:.:.:.:.:.:. 0/0:14:14,0:14:543:0:0:0,-4.21442,-49.216 dDocent_Contig_11254 44 . T C 119.213 . AB=0.294118;ABP=9.26925;AC=1;AF=0.166667;AN=6;AO=5;CIGAR=1X;DP=26;DPB=26;DPRA=3.77778;EPP=13.8677;EPPR=40.3389;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=0.904762;PAO=0;PQA=0;PQR=0;PRO=0;QA=202;QR=821;RO=21;RPL=0;RPP=13.8677;RPPR=48.6112;RPR=5;RUN=1;SAF=5;SAP=13.8677;SAR=0;SRF=20;SRP=40.3389;SRR=1;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:17:12,5:12:460:5:202:-13.444,0,-36.6278 0/0:3:3,0:3:119:0:0:0,-0.90309,-11.0954 0/0:6:6,0:6:242:0:0:0,-1.80618,-22.1569 dDocent_Contig_11256 107 . N C 66.4848 . AB=0;ABP=0;AC=2;AF=1;AN=2;AO=2;CIGAR=1X;DP=2;DPB=2;DPRA=0;EPP=7.35324;EPPR=0;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=0;NS=1;NUMALT=1;ODDS=5.99146;PAIRED=1;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=70;QR=0;RO=0;RPL=0;RPP=7.35324;RPPR=0;RPR=2;RUN=1;SAF=0;SAP=7.35324;SAR=2;SRF=0;SRP=0;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL ./.:.:.:.:.:.:.:. 1/1:2:0,2:0:0:2:70:-6.6474,-0.60206,0 ./.:.:.:.:.:.:.:. dDocent_Contig_11259 126 . G A 267.55 . AB=0.392857;ABP=5.80219;AC=1;AF=0.166667;AN=6;AO=11;CIGAR=1X;DP=45;DPB=45;DPRA=3.29412;EPP=26.8965;EPPR=76.8404;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=404;QR=1188;RO=34;RPL=0;RPP=26.8965;RPPR=76.8404;RPR=11;RUN=1;SAF=0;SAP=26.8965;SAR=11;SRF=0;SRP=76.8404;SRR=34;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:28:17,11:17:590:11:404:-28.2777,0,-44.9956 0/0:3:3,0:3:105:0:0:0,-0.90309,-9.79609 0/0:14:14,0:14:493:0:0:0,-4.21442,-44.7026 dDocent_Contig_11260 14 . C A 65.7315 . AB=0.2;ABP=10.8276;AC=1;AF=0.166667;AN=6;AO=2;CIGAR=1X2M1X;DP=41;DPB=41;DPRA=0;EPP=7.35324;EPPR=76.8404;GTI=0;LEN=1;MEANALT=2;MQM=60;MQMR=60;NS=3;NUMALT=2;ODDS=0;PAIRED=0;PAIREDR=0.794118;PAO=0;PQA=0;PQR=0;PRO=0;QA=76;QR=1339;RO=34;RPL=0;RPP=7.35324;RPPR=76.8404;RPR=2;RUN=1;SAF=2;SAP=7.35324;SAR=0;SRF=34;SRP=76.8404;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|0:25:23,0,2:23:913:0,2:0,81:-0.159984,-7.08367,-82.2345,0,-75.5547,-74.9526 0|1:10:7,2,1:7:263:2,1:76,39:-4.11919,0,-20.9284,-3.01722,-18.3228,-24.2557 0|0:6:4,0,2:4:163:0,2:0,82:-5.9735,-7.17762,-20.6233,0,-13.8543,-13.2522 dDocent_Contig_11261 25 . T G 162.824 . AB=0.285714;ABP=14.1779;AC=3;AF=0.5;AN=6;AO=8;CIGAR=1X;DP=28;DPB=28;DPRA=0;EPP=20.3821;EPPR=46.4397;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=3.46945e-18;PAIRED=0;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=320;QR=817;RO=20;RPL=0;RPP=20.3821;RPPR=46.4397;RPR=8;RUN=1;SAF=8;SAP=20.3821;SAR=0;SRF=20;SRP=46.4397;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:19:14,5:14:571:5:203:-12.9335,0,-46.0121 0/1:3:1,2:1:41:2:81:-6.78264,0,-3.19148 0/1:6:5,1:5:205:1:36:-1.79209,0,-17.0288 dDocent_Contig_11262 29 . G C 186.19 . AB=0.22;ABP=37.059;AC=3;AF=0.5;AN=6;AO=11;CIGAR=1X;DP=50;DPB=50;DPRA=0;EPP=26.8965;EPPR=87.6977;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=0.923077;PAO=0;PQA=0;PQR=0;PRO=0;QA=423;QR=1497;RO=39;RPL=0;RPP=26.8965;RPPR=87.6977;RPR=11;RUN=1;SAF=11;SAP=26.8965;SAR=0;SRF=39;SRP=87.6977;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:30:26,4:26:986:4:144:-4.27894,0,-79.9982 0/1:5:3,2:3:122:2:81:-6.18058,0,-9.86734 0/1:15:10,5:10:389:5:198:-13.6816,0,-30.8454 dDocent_Contig_11263 16 . A T 574.121 . AB=0.210526;ABP=99.8123;AC=3;AF=0.5;AN=6;AO=28;CIGAR=1X;DP=133;DPB=133;DPRA=0;EPP=63.8115;EPPR=231.015;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=1132;QR=4206;RO=105;RPL=0;RPP=63.8115;RPPR=231.015;RPR=28;RUN=1;SAF=28;SAP=63.8115;SAR=0;SRF=105;SRP=231.015;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:82:63,19:63:2536:19:764:-44.3949,0,-203.686 0/1:15:12,3:12:478:3:122:-6.85704,0,-38.8533 0/1:36:30,6:30:1192:6:246:-11.683,0,-96.7202 dDocent_Contig_11264 30 . T C 49.4867 . AB=0.153846;ABP=30.0702;AC=1;AF=0.166667;AN=6;AO=8;CIGAR=1X;DP=137;DPB=137;DPRA=1.02222;EPP=20.3821;EPPR=283.13;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=320;QR=5121;RO=129;RPL=0;RPP=20.3821;RPPR=283.13;RPR=8;RUN=1;SAF=8;SAP=20.3821;SAR=0;SRF=129;SRP=283.13;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:66:62,4:62:2475:4:162:0,-4.90123,-207.927 0/1:26:22,4:22:860:4:158:-6.77258,0,-69.8863 0/0:45:45,0:45:1786:0:0:0,-13.5463,-160.951 dDocent_Contig_11265 21 . C T 53.3694 . AB=0.122449;ABP=63.6786;AC=1;AF=0.166667;AN=6;AO=7;CIGAR=1X;DP=92;DPB=92;DPRA=1.92105;EPP=18.2106;EPPR=187.585;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=3.46945e-18;PAIRED=1;PAIREDR=0.811765;PAO=0;PQA=0;PQR=0;PRO=0;QA=276;QR=3400;RO=85;RPL=0;RPP=18.2106;RPPR=187.585;RPR=7;RUN=1;SAF=7;SAP=18.2106;SAR=0;SRF=85;SRP=187.585;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:49:43,6:43:1708:6:236:-6.85982,0,-139.194 0/0:19:19,0:19:765:0:0:0,-5.71957,-69.1714 0/0:24:23,1:23:927:1:40:0,-3.22904,-79.7358 dDocent_Contig_11266 14 . T G 6682.05 . AB=0.0821429;ABP=427.657;AC=1;AF=0.166667;AN=6;AO=23;CIGAR=1X1M1X;DP=280;DPB=280;DPRA=0;EPP=52.9542;EPPR=113.755;GTI=0;LEN=1;MEANALT=2;MQM=60;MQMR=60;NS=3;NUMALT=2;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=892;QR=2013;RO=51;RPL=0;RPP=52.9542;RPPR=113.755;RPR=23;RUN=1;SAF=23;SAP=52.9542;SAR=0;SRF=51;SRP=113.755;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|0:177:41,16,120:41:1630:16,120:613,4788:-381.973,-344.014,-473.395,0,-83.9085,-98.0844 1|0:33:1,5,27:1:37:5,27:199,1084:-102.408,-86.3236,-87.8443,-13.3864,0,-8.28098 0|0:70:9,2,59:9:346:2,59:80,2334:-189.347,-185.466,-213.265,0,-21.7966,-10.6288 dDocent_Contig_11267 118 . A G 147.84 . AB=0.222222;ABP=15.074;AC=1;AF=0.166667;AN=6;AO=4;CIGAR=1X2M1X1M1X3M1X1M;DP=33;DPB=33;DPRA=0;EPP=11.6962;EPPR=46.4397;GTI=0;LEN=1;MEANALT=2;MQM=47;MQMR=60;NS=3;NUMALT=3;ODDS=0;PAIRED=0;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=135;QR=647;RO=20;RPL=0;RPP=11.6962;RPPR=46.4397;RPR=4;RUN=1;SAF=0;SAP=11.6962;SAR=4;SRF=0;SRP=46.4397;SRR=20;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|1:18:11,4,3,0:11:356:4,3,0:135,102,0:-7.55946,0,-27.5025,-2.59498,-20.4292,-30.4026,-10.8708,-28.7067,-31.3057,-39.5818 0|0:10:7,0,3,0:7:228:0,3,0:0,82,0:-4.64136,-6.74857,-25.1929,0,-18.7333,-17.8302,-6.74857,-25.1929,-18.7333,-25.1929 0|0:5:2,0,0,3:2:63:0,0,3:0,0,103:-8.10487,-8.70693,-13.7623,-8.70693,-13.7623,-13.7623,0,-5.38158,-5.38158,-4.47849 dDocent_Contig_11270 10 . G A 1228.31 . AB=0.144231;ABP=117.347;AC=1;AF=0.166667;AN=6;AO=15;CIGAR=2X;DP=104;DPB=104;DPRA=0;EPP=35.5824;EPPR=79.0118;GTI=0;LEN=1;MEANALT=2;MQM=47.5333;MQMR=60;NS=3;NUMALT=2;ODDS=1.38778e-17;PAIRED=0;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=484;QR=1371;RO=35;RPL=0;RPP=35.5824;RPPR=79.0118;RPR=15;RUN=1;SAF=0;SAP=35.5824;SAR=15;SRF=35;SRP=79.0118;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|0:50:18,3,29:18:709:3,29:103,1088:-70.4371,-67.5493,-124.996,0,-50.0713,-49.6387 1|0:29:4,6,19:4:163:6,19:191,710:-43.6122,-29.4964,-41.1587,-1.77503,0,-9.53878 0|0:25:13,6,6:13:499:6,6:190,225:-14.3021,-3.0159,-42.1681,0,-25.7903,-39.1897 dDocent_Contig_11271 106 . N C 1133.69 . AB=0;ABP=0;AC=6;AF=1;AN=6;AO=38;CIGAR=2X;DP=38;DPB=38;DPRA=0;EPP=85.5263;EPPR=0;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=0;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=1244;QR=0;RO=0;RPL=0;RPP=85.5263;RPPR=0;RPR=38;RUN=1;SAF=0;SAP=85.5263;SAR=38;SRF=0;SRP=0;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 1|1:18:0,18:0:0:18:612:-55.4012,-5.41854,0 1|1:5:0,5:0:0:5:154:-14.1641,-1.50515,0 1|1:15:0,15:0:0:15:478:-43.326,-4.51545,0 dDocent_Contig_11272 10 . G A 950.165 . AB=0.451613;ABP=4.27115;AC=3;AF=0.5;AN=6;AO=28;CIGAR=2X3M1I4M;DP=77;DPB=82.2222;DPRA=2.06667;EPP=63.8115;EPPR=68.1545;GTI=0;LEN=1;MEANALT=2;MQM=42.7143;MQMR=60;NS=3;NUMALT=2;ODDS=1.38778e-17;PAIRED=0;PAIREDR=0.9;PAO=0;PQA=0;PQR=0;PRO=0;QA=1043;QR=1180;RO=30;RPL=0;RPP=63.8115;RPPR=68.1545;RPR=28;RUN=1;SAF=28;SAP=63.8115;SAR=0;SRF=30;SRP=68.1545;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 1|1:38:6,13,19:6:242:13,19:510,701:-74.3922,-34.5812,-50.6284,-21.6401,0,-35.8734 0|0:15:14,1,0:14:546:1,0:40,0:0,-0.612764,-45.5813,-4.21442,-45.8823,-49.0937 0|1:24:10,5,9:10:392:5,9:200,342:-24.1468,-10.8573,-41.5995,0,-15.9412,-29.5236 dDocent_Contig_11273 9 . T C 100.013 . AB=0.5;ABP=3.0103;AC=1;AF=0.166667;AN=6;AO=6;CIGAR=1X;DP=76;DPB=76;DPRA=0.961538;EPP=16.0391;EPPR=155.013;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=232;QR=2663;RO=70;RPL=0;RPP=16.0391;RPPR=155.013;RPR=6;RUN=1;SAF=6;SAP=16.0391;SAR=0;SRF=70;SRP=155.013;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:42:40,2:40:1513:2:78:0,-5.23979,-129.041 0/1:8:4,4:4:156:4:154:-11.8252,0,-12.009 0/0:26:26,0:26:994:0:0:0,-7.82678,-89.77 dDocent_Contig_11275 63 . G A 1042.67 . AB=0.6;ABP=8.22183;AC=3;AF=0.5;AN=6;AO=36;CIGAR=1X;DP=60;DPB=60;DPRA=0;EPP=81.1833;EPPR=55.1256;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=1409;QR=902;RO=24;RPL=36;RPP=81.1833;RPPR=55.1256;RPR=0;RUN=1;SAF=36;SAP=81.1833;SAR=0;SRF=24;SRP=55.1256;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:37:14,23:14:516:23:909:-70.9804,0,-35.6319 0/1:7:3,4:3:121:4:155:-12.2175,0,-9.17299 0/1:16:7,9:7:265:9:345:-26.5922,0,-19.3943 dDocent_Contig_11276 9 . T C 76.2111 . AB=0.153846;ABP=43.6001;AC=1;AF=0.166667;AN=6;AO=7;CIGAR=1X;DP=78;DPB=78;DPRA=3.04545;EPP=18.2106;EPPR=157.185;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=267;QR=2689;RO=71;RPL=0;RPP=18.2106;RPPR=157.185;RPR=7;RUN=1;SAF=7;SAP=18.2106;SAR=0;SRF=71;SRP=157.185;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:39:33,6:33:1251:6:228:-9.14399,0,-101.138 0/0:11:11,0:11:417:0:0:0,-3.31133,-37.8805 0/0:28:27,1:27:1021:1:39:0,-4.53228,-88.2953 dDocent_Contig_11278 24 . G A 1306.42 . AB=0.560976;ABP=5.65844;AC=3;AF=0.5;AN=6;AO=46;CIGAR=1X;DP=82;DPB=82;DPRA=0;EPP=102.898;EPPR=81.1833;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=1776;QR=1380;RO=36;RPL=0;RPP=102.898;RPPR=81.1833;RPR=46;RUN=1;SAF=46;SAP=102.898;SAR=0;SRF=36;SRP=81.1833;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:41:18,23:18:713:23:901:-69.0603,0,-52.1565 0/1:11:8,3:8:288:3:120:-7.87636,0,-22.9498 0/1:30:10,20:10:379:20:755:-59.2279,0,-25.4251 dDocent_Contig_11279 97 . T A 110.165 . AB=0.233333;ABP=21.5402;AC=1;AF=0.166667;AN=6;AO=8;CIGAR=1X;DP=44;DPB=44;DPRA=3.9;EPP=20.3821;EPPR=81.1833;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=254;QR=1255;RO=36;RPL=8;RPP=20.3821;RPPR=81.1833;RPR=0;RUN=1;SAF=8;SAP=20.3821;SAR=0;SRF=36;SRP=81.1833;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:30:23,7:23:791:7:236:-12.5392,0,-62.4738 0/0:9:8,1:8:285:1:18:0,-0.909297,-24.1946 0/0:5:5,0:5:179:0:0:0,-1.50515,-16.4604 dDocent_Contig_11280 14 . T C 345.708 . AB=0.246377;ABP=41.5618;AC=3;AF=0.5;AN=6;AO=17;CIGAR=1X2M1X;DP=69;DPB=69;DPRA=0;EPP=39.9253;EPPR=115.927;GTI=0;LEN=1;MEANALT=1;MQM=59.8824;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=0.942308;PAO=0;PQA=0;PQR=0;PRO=0;QA=664;QR=2061;RO=52;RPL=0;RPP=39.9253;RPPR=115.927;RPR=17;RUN=1;SAF=17;SAP=39.9253;SAR=0;SRF=52;SRP=115.927;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|1:31:25,6:25:1000:6:236:-12.2775,0,-80.9682 0|1:14:8,6:8:308:6:229:-16.7519,0,-23.8625 0|1:24:19,5:19:753:5:199:-11.0642,0,-60.868 dDocent_Contig_11281 36 . C T 245.868 . AB=0.181818;ABP=32.0291;AC=3;AF=0.5;AN=6;AO=11;CIGAR=1X;DP=52;DPB=52;DPRA=0;EPP=26.8965;EPPR=92.0407;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=3.46945e-18;PAIRED=1;PAIREDR=0.97561;PAO=0;PQA=0;PQR=0;PRO=0;QA=440;QR=1569;RO=41;RPL=0;RPP=26.8965;RPPR=92.0407;RPR=11;RUN=1;SAF=11;SAP=26.8965;SAR=0;SRF=41;SRP=92.0407;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:33:27,6:27:1035:6:239:-11.9503,0,-83.4959 1/1:5:1,4:1:9:4:163:-14.1584,-0.605153,0 0/0:14:13,1:13:525:1:38:0,-0.417151,-43.7982 dDocent_Contig_11283 50 . T G 238.427 . AB=0.244444;ABP=28.5372;AC=2;AF=0.333333;AN=6;AO=11;CIGAR=1X;DP=50;DPB=50;DPRA=4.5;EPP=26.8965;EPPR=87.6977;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=3.46945e-18;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=446;QR=1563;RO=39;RPL=11;RPP=26.8965;RPPR=87.6977;RPR=0;RUN=1;SAF=11;SAP=26.8965;SAR=0;SRF=39;SRP=87.6977;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:30:21,9:21:842:9:364:-24.0935,0,-67.0619 0/0:5:5,0:5:194:0:0:0,-1.50515,-17.8297 0/1:15:13,2:13:527:2:82:-3.26423,0,-43.2617 dDocent_Contig_11284 98 . N G 87.5344 . AB=0;ABP=0;AC=4;AF=1;AN=4;AO=3;CIGAR=1X;DP=3;DPB=3;DPRA=0;EPP=9.52472;EPPR=0;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=0;NS=2;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=88;QR=0;RO=0;RPL=3;RPP=9.52472;RPPR=0;RPR=0;RUN=1;SAF=3;SAP=9.52472;SAR=0;SRF=0;SRP=0;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL ./.:.:.:.:.:.:.:. 1/1:1:0,1:0:0:1:18:-1.79997,-0.30103,0 1/1:2:0,2:0:0:2:70:-6.6474,-0.60206,0 dDocent_Contig_11285 12 . G A 5794.45 . AB=0.0344828;ABP=876.391;AC=2;AF=0.333333;AN=6;AO=16;CIGAR=3M1X2M1X2M1X3M1X;DP=464;DPB=466.714;DPRA=0;EPP=37.7539;EPPR=92.0407;GTI=0;LEN=1;MEANALT=22.3333;MQM=60;MQMR=60;NS=3;NUMALT=6;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=608;QR=1573;RO=41;RPL=0;RPP=37.7539;RPPR=92.0407;RPR=16;RUN=1;SAF=16;SAP=37.7539;SAR=0;SRF=41;SRP=92.0407;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|0:176:30,15,5,10,4,73,3:30:1152:15,5,10,4,73,3:557,196,387,155,2823,119:-222.822,-186.586,-276.629,-216.29,-265.582,-309.344,-200.062,-249.354,-279.058,-291.611,-219.119,-268.411,-298.115,-281.887,-312.474,0,-49.2942,-78.9981,-62.7694,-81.8266,-72.5855,-222.057,-271.349,-301.053,-284.825,-303.882,-84.7645,-315.713 1|0:175:3,30,36,1,10,43,1:3:116:30,36,1,10,43,1:1154,1378,39,374,1623,39:-233.185,-139.976,-140.474,-123.197,-38.6139,-121.888,-230.882,-146.299,-129.519,-240.109,-203.466,-118.883,-102.103,-209.789,-209.984,-101.361,-16.7787,0,-107.684,-80.2682,-97.9454,-230.882,-146.299,-129.519,-237.204,-209.789,-107.684,-240.109 1|0:113:8,10,12,5,2,37,6:8:305:10,12,5,2,37,6:388,468,193,79,1444,226:-128.961,-99.7528,-121.763,-93.6776,-87.0817,-115.086,-115.518,-108.923,-102.847,-139.034,-124.868,-118.272,-112.197,-134.038,-149.286,-12.6713,-6.0752,0,-21.8411,-31.1906,-26.5538,-112.853,-106.257,-100.182,-122.023,-131.372,-19.1759,-136.067 dDocent_Contig_11286 79 . T C 1298.85 . AB=0.404255;ABP=14.2373;AC=3;AF=0.5;AN=6;AO=57;CIGAR=1X;DP=141;DPB=141;DPRA=0;EPP=126.784;EPPR=183.243;GTI=0;LEN=1;MEANALT=1.33333;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=1966;QR=2909;RO=83;RPL=57;RPP=126.784;RPPR=183.243;RPR=0;RUN=1;SAF=57;SAP=126.784;SAR=0;SRF=83;SRP=183.243;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:59:24,35:24:847:35:1218:-92.1655,0,-58.7897 0/1:54:38,16:38:1317:16:544:-33.0245,0,-102.574 0/1:28:21,6:21:745:6:204:-10.2175,0,-58.8966 dDocent_Contig_11288 9 . T A 51.731 . AB=0.230769;ABP=11.1951;AC=1;AF=0.166667;AN=6;AO=3;CIGAR=1X;DP=61;DPB=61;DPRA=0.541667;EPP=9.52472;EPPR=128.956;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=117;QR=2215;RO=58;RPL=0;RPP=9.52472;RPPR=128.956;RPR=3;RUN=1;SAF=3;SAP=9.52472;SAR=0;SRF=58;SRP=128.956;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:41:41,0:41:1560:0:0:0,-12.3422,-140.672 0/0:7:7,0:7:270:0:0:0,-2.10721,-24.6655 0/1:13:10,3:10:385:3:117:-6.99699,0,-31.0933 dDocent_Contig_11289 17 . C G 58.6326 . AB=0.142857;ABP=18.5208;AC=3;AF=0.5;AN=6;AO=4;CIGAR=1X;DP=30;DPB=30;DPRA=0;EPP=11.6962;EPPR=59.4686;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=0.75;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=161;QR=1029;RO=26;RPL=0;RPP=11.6962;RPPR=59.4686;RPR=4;RUN=1;SAF=4;SAP=11.6962;SAR=0;SRF=26;SRP=59.4686;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:15:14,1:14:564:1:41:0,-0.420883,-47.0071 1/1:1:0,1:0:0:1:41:-4.09457,-0.30103,0 0/1:14:12,2:12:465:2:79:-3.28282,0,-37.9773 dDocent_Contig_11291 47 . C G 400.803 . AB=0.478261;ABP=3.10471;AC=4;AF=0.666667;AN=6;AO=14;CIGAR=1X;DP=26;DPB=26;DPRA=0;EPP=33.4109;EPPR=29.068;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=549;QR=480;RO=12;RPL=0;RPP=33.4109;RPPR=29.068;RPR=14;RUN=1;SAF=14;SAP=33.4109;SAR=0;SRF=12;SRP=29.068;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:13:6,7:6:245:7:279:-21.5662,0,-18.5161 1/1:3:0,3:0:0:3:114:-10.6322,-0.90309,0 0/1:10:6,4:6:235:4:156:-11.4046,0,-18.5097 dDocent_Contig_11292 39 . A G 328.806 . AB=0.333333;ABP=13.1438;AC=2;AF=0.333333;AN=6;AO=14;CIGAR=1X;DP=54;DPB=54;DPRA=1.75;EPP=5.49198;EPPR=3.0103;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=0.95;PAO=0;PQA=0;PQR=0;PRO=0;QA=537;QR=1486;RO=40;RPL=0;RPP=33.4109;RPPR=89.8692;RPR=14;RUN=1;SAF=9;SAP=5.49198;SAR=5;SRF=20;SRP=3.0103;SRR=20;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:12:12,0:12:442:0:0:0,-3.61236,-40.1216 0/1:6:2,4:2:75:4:149:-11.9662,0,-5.31341 0/1:36:26,10:26:969:10:388:-24.4372,0,-76.6792 dDocent_Contig_11293 10 . G T 2452.19 . AB=0.0547945;ABP=254.366;AC=0;AF=0;AN=6;AO=8;CIGAR=1X2M1X3M1X2M1X;DP=146;DPB=146;DPRA=0;EPP=20.3821;EPPR=48.6112;GTI=0;LEN=1;MEANALT=4.66667;MQM=60;MQMR=60;NS=3;NUMALT=5;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=311;QR=813;RO=21;RPL=0;RPP=20.3821;RPPR=48.6112;RPR=8;RUN=1;SAF=8;SAP=20.3821;SAR=0;SRF=21;SRP=48.6112;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|0:71:7,5,10,30,19,0:7:277:5,10,30,19,0:193,396,1183,752,0:-134.291,-120.549,-141.842,-103.804,-110.753,-123.591,-39.068,-46.0176,-29.2718,-52.8347,-74.5326,-81.4819,-64.7363,0,-91.6106,-136.398,-143.347,-126.602,-61.8656,-97.3301,-159.195 0|0:26:4,2,0,4,12,4:4:153:2,0,4,12,4:78,0,161,477,158:-38.7754,-33.5685,-45.5173,-39.9796,-46.1194,-52.5307,-26.7091,-32.8487,-39.2601,-38.0559,-0.723843,-6.86187,-13.2732,0,-9.66079,-26.9785,-33.1179,-39.5292,-26.2582,-0.270748,-38.3251 0|0:49:10,1,0,17,18,0:10:383:1,0,17,18,0:40,0,658,711,0:-77.5819,-77.2968,-108.424,-80.5922,-108.725,-112.02,-26.5444,-54.6766,-57.9721,-52.8546,-22.6235,-50.7567,-54.0523,0,-48.6338,-80.5922,-108.725,-112.02,-57.9721,-54.0523,-112.02 dDocent_Contig_11294 145 . T A 46.1639 . AB=0.214286;ABP=12.937;AC=1;AF=0.166667;AN=6;AO=3;CIGAR=1X;DP=21;DPB=21;DPRA=4;EPP=9.52472;EPPR=42.0968;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=0;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=111;QR=730;RO=18;RPL=0;RPP=9.52472;RPPR=42.0968;RPR=3;RUN=1;SAF=0;SAP=9.52472;SAR=3;SRF=0;SRP=42.0968;SRR=18;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:14:11,3:11:446:3:111:-6.1385,0,-36.2818 0/0:1:1,0:1:41:0:0:0,-0.30103,-4.09457 0/0:6:6,0:6:243:0:0:0,-1.80618,-22.248 dDocent_Contig_11295 34 . C A 46.5774 . AB=0.5;ABP=3.0103;AC=1;AF=0.166667;AN=6;AO=2;CIGAR=1X;DP=20;DPB=20;DPRA=0.5;EPP=7.35324;EPPR=42.0968;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=81;QR=724;RO=18;RPL=0;RPP=7.35324;RPPR=42.0968;RPR=2;RUN=1;SAF=2;SAP=7.35324;SAR=0;SRF=18;SRP=42.0968;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:9:9,0:9:367:0:0:0,-2.70927,-33.3953 0/0:7:7,0:7:279:0:0:0,-2.10721,-25.4803 0/1:4:2,2:2:78:2:81:-6.48161,0,-6.19918 dDocent_Contig_11296 129 . C T 62.1306 . AB=0.190476;ABP=20.4855;AC=1;AF=0.25;AN=4;AO=5;CIGAR=1X1M1X;DP=38;DPB=38;DPRA=0;EPP=13.8677;EPPR=72.4974;GTI=0;LEN=1;MEANALT=1.5;MQM=60;MQMR=60;NS=2;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=189;QR=1219;RO=32;RPL=0;RPP=13.8677;RPPR=72.4974;RPR=5;RUN=1;SAF=0;SAP=13.8677;SAR=5;SRF=0;SRP=72.4974;SRR=32;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|1:21:17,4:17:648:4:154:-7.91196,0,-52.3302 .:.:.:.:.:.:.:. 0|0:17:15,1:15:571:1:35:0,-1.51952,-48.3553 dDocent_Contig_11297 7 . C T 32.8924 . AB=0.16;ABP=28.1125;AC=3;AF=0.5;AN=6;AO=4;CIGAR=1X;DP=25;DPB=25;DPRA=0;EPP=11.6962;EPPR=48.6112;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=156;QR=808;RO=21;RPL=0;RPP=11.6962;RPPR=48.6112;RPR=4;RUN=1;SAF=4;SAP=11.6962;SAR=0;SRF=21;SRP=48.6112;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:12:10,2:10:386:2:78:-3.79111,0,-31.4847 0/1:3:2,1:2:78:1:39:-2.99347,0,-6.50038 0/1:10:9,1:9:344:1:39:-0.886264,0,-28.3074 dDocent_Contig_11298 8 . A G 699.023 . AB=0.242718;ABP=62.2304;AC=2;AF=0.333333;AN=6;AO=25;CIGAR=1M1X5M;DP=103;DPB=93.7143;DPRA=0;EPP=57.2971;EPPR=141.985;GTI=0;LEN=1;MEANALT=2;MQM=60;MQMR=60;NS=3;NUMALT=2;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=967;QR=2490;RO=64;RPL=0;RPP=57.2971;RPPR=141.985;RPR=25;RUN=1;SAF=25;SAP=57.2971;SAR=0;SRF=64;SRP=141.985;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|1:66:42,4,19:42:1627:4,19:150,733:-47.5672,-47.9251,-180.375,0,-121.383,-127.949 0|1:5:3,0,2:3:116:0,2:0,78:-5.89832,-6.80141,-16.3277,0,-9.91461,-9.31255 0|0:32:19,9,4:19:747:9,4:338,156:-21.9596,0,-58.7393,-14.8513,-48.6256,-75.105 dDocent_Contig_11300 16 . C T 376.021 . AB=0.20202;ABP=79.3628;AC=3;AF=0.5;AN=6;AO=20;CIGAR=1X;DP=99;DPB=99;DPRA=0;EPP=46.4397;EPPR=174.557;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=798;QR=3048;RO=79;RPL=0;RPP=46.4397;RPPR=174.557;RPR=20;RUN=1;SAF=20;SAP=46.4397;SAR=0;SRF=79;SRP=174.557;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:49:39,10:39:1519:10:407:-22.2401,0,-122.196 0/1:23:19,4:19:710:4:162:-8.04327,0,-57.2879 0/1:27:21,6:21:819:6:229:-12.8416,0,-65.8848 dDocent_Contig_11301 30 . G A 40.3041 . AB=0.119048;ABP=55.9529;AC=1;AF=0.166667;AN=6;AO=5;CIGAR=1X;DP=71;DPB=71;DPRA=2.89655;EPP=13.8677;EPPR=146.327;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=0.984848;PAO=0;PQA=0;PQR=0;PRO=0;QA=198;QR=2567;RO=66;RPL=0;RPP=13.8677;RPPR=146.327;RPR=5;RUN=1;SAF=5;SAP=13.8677;SAR=0;SRF=66;SRP=146.327;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:42:37,5:37:1423:5:198:-5.55321,0,-115.664 0/0:5:5,0:5:201:0:0:0,-1.50515,-18.4705 0/0:24:24,0:24:943:0:0:0,-7.22472,-85.1744 dDocent_Contig_11302 10 . G A 139.634 . AB=0.4;ABP=4.31318;AC=2;AF=0.333333;AN=6;AO=6;CIGAR=1X;DP=22;DPB=22;DPRA=1.07143;EPP=16.0391;EPPR=37.7539;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=0;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=236;QR=643;RO=16;RPL=0;RPP=16.0391;RPPR=37.7539;RPR=6;RUN=1;SAF=6;SAP=16.0391;SAR=0;SRF=16;SRP=37.7539;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:7:4,3:4:154:3:122:-9.26528,0,-12.124 0/0:7:7,0:7:285:0:0:0,-2.10721,-26.0244 0/1:8:5,3:5:204:3:114:-8.22098,0,-16.3358 dDocent_Contig_11305 18 . G T 742.375 . AB=0.411765;ABP=7.60871;AC=3;AF=0.5;AN=6;AO=28;CIGAR=1X;DP=68;DPB=68;DPRA=0;EPP=63.8115;EPPR=89.8692;GTI=0;LEN=1;MEANALT=1;MQM=58.7143;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=0.464286;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=1104;QR=1553;RO=40;RPL=0;RPP=63.8115;RPPR=89.8692;RPR=28;RUN=1;SAF=28;SAP=63.8115;SAR=0;SRF=40;SRP=89.8692;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:37:21,16:21:837:16:637:-46.3251,0,-64.5039 0/1:7:4,3:4:157:3:122:-9.26528,0,-12.4007 0/1:24:15,9:15:559:9:345:-24.17,0,-43.4075 dDocent_Contig_11306 73 . C G 78.3466 . AB=0.363636;ABP=4.78696;AC=1;AF=0.166667;AN=6;AO=4;CIGAR=1X;DP=18;DPB=18;DPRA=3.14286;EPP=11.6962;EPPR=33.4109;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=137;QR=496;RO=14;RPL=4;RPP=11.6962;RPPR=33.4109;RPR=0;RUN=1;SAF=4;SAP=11.6962;SAR=0;SRF=14;SRP=33.4109;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:11:7,4:7:250:4:137:-9.35673,0,-19.5354 0/0:1:1,0:1:34:0:0:0,-0.30103,-3.39891 0/0:6:6,0:6:212:0:0:0,-1.80618,-19.425 dDocent_Contig_11307 155 . T C 41.9331 . AB=0.166667;ABP=26.1727;AC=1;AF=0.166667;AN=6;AO=4;CIGAR=1X;DP=34;DPB=34;DPRA=4.8;EPP=11.6962;EPPR=68.1545;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=140;QR=1196;RO=30;RPL=0;RPP=11.6962;RPPR=68.1545;RPR=4;RUN=1;SAF=0;SAP=11.6962;SAR=4;SRF=0;SRP=68.1545;SRR=30;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:24:20,4:20:799:4:140:-5.71542,0,-65.0048 0/0:1:1,0:1:40:0:0:0,-0.30103,-3.99568 0/0:9:9,0:9:357:0:0:0,-2.70927,-32.4929 dDocent_Contig_11308 9 . T C 3271.35 . AB=0.582278;ABP=7.6556;AC=4;AF=0.666667;AN=6;AO=104;CIGAR=1X;DP=139;DPB=139;DPRA=0;EPP=228.843;EPPR=79.0118;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=4011;QR=1350;RO=35;RPL=0;RPP=228.843;RPPR=79.0118;RPR=104;RUN=1;SAF=104;SAP=228.843;SAR=0;SRF=35;SRP=79.0118;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:38:20,18:20:767:18:688:-50.8129,0,-57.9199 0/1:41:13,28:13:505:28:1085:-85.612,0,-33.457 1/1:60:2,58:2:78:58:2238:-194.233,-10.6583,0 dDocent_Contig_11309 67 . A G 570.014 . AB=0.319444;ABP=23.398;AC=3;AF=0.5;AN=6;AO=23;CIGAR=1X;DP=72;DPB=72;DPRA=0;EPP=52.9542;EPPR=109.412;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=903;QR=1895;RO=49;RPL=23;RPP=52.9542;RPPR=109.412;RPR=0;RUN=1;SAF=23;SAP=52.9542;SAR=0;SRF=49;SRP=109.412;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:44:32,12:32:1237:12:471:-29.4922,0,-98.3426 0/1:15:5,10:5:179:10:391:-31.0299,0,-11.9393 0/1:13:12,1:12:479:1:41:-0.181177,0,-39.5487 dDocent_Contig_11310 31 . A G 1831.18 . AB=0.567568;ABP=7.41193;AC=3;AF=0.5;AN=6;AO=63;CIGAR=1X;DP=111;DPB=111;DPRA=0;EPP=85.7675;EPPR=82.8119;GTI=0;LEN=1;MEANALT=1;MQM=57.8889;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=0.206349;PAIREDR=0.9375;PAO=0;PQA=0;PQR=0;PRO=0;QA=2464;QR=1886;RO=48;RPL=0;RPP=139.813;RPPR=107.241;RPR=63;RUN=1;SAF=56;SAP=85.7675;SAR=7;SRF=45;SRP=82.8119;SRR=3;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:62:30,32:30:1188:32:1271:-95.8861,0,-88.5335 0/1:28:15,13:15:576:13:494:-35.8392,0,-43.7488 0/1:21:3,18:3:122:18:699:-56.9152,0,-5.05086 dDocent_Contig_11311 14 . T C 971.603 . AB=0.545455;ABP=4.19474;AC=3;AF=0.5;AN=6;AO=36;CIGAR=1M3I1M2X;DP=66;DPB=93;DPRA=0;EPP=81.1833;EPPR=68.1545;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=1350;QR=1210;RO=30;RPL=0;RPP=81.1833;RPPR=68.1545;RPR=36;RUN=1;SAF=36;SAP=81.1833;SAR=0;SRF=30;SRP=68.1545;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|1:48:19,29:19:768:29:1084:-83.4194,0,-54.9918 0|1:7:4,3:4:158:3:114:-8.52514,0,-12.4928 0|1:11:7,4:7:284:4:152:-10.7386,0,-22.6225 dDocent_Contig_11312 31 . G A 108.244 . AB=0.111111;ABP=26.6552;AC=0;AF=0;AN=6;AO=2;CIGAR=1X3M1X;DP=48;DPB=48;DPRA=1.2;EPP=7.35324;EPPR=89.8692;GTI=0;LEN=1;MEANALT=2;MQM=60;MQMR=60;NS=3;NUMALT=2;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=72;QR=1489;RO=40;RPL=0;RPP=7.35324;RPPR=89.8692;RPR=2;RUN=1;SAF=2;SAP=7.35324;SAR=0;SRF=40;SRP=89.8692;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|0:19:19,0,0:19:709:0,0:0,0:0,-5.71957,-64.1413,-5.71957,-64.1413,-64.1413 0|0:11:10,0,0:10:363:0,0:0,0:0,-3.0103,-32.8993,-3.0103,-32.8993,-32.8993 0|0:18:11,2,5:11:417:2,5:72,194:-12.6483,-10.0942,-43.6778,0,-28.3374,-32.7027 dDocent_Contig_11314 33 . A G 180.893 . AB=0.333333;ABP=8.07707;AC=1;AF=0.166667;AN=6;AO=7;CIGAR=1X;DP=36;DPB=36;DPRA=2.8;EPP=18.2106;EPPR=65.983;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=284;QR=1154;RO=29;RPL=0;RPP=18.2106;RPPR=65.983;RPR=7;RUN=1;SAF=7;SAP=18.2106;SAR=0;SRF=29;SRP=65.983;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:21:14,7:14:560:7:284:-19.6122,0,-44.4212 0/0:6:6,0:6:243:0:0:0,-1.80618,-22.2476 0/0:9:9,0:9:351:0:0:0,-2.70927,-31.9451 dDocent_Contig_11316 41 . A G 50.3351 . AB=0.2;ABP=14.7363;AC=1;AF=0.166667;AN=6;AO=6;CIGAR=1X;DP=59;DPB=59;DPRA=9.33333;EPP=16.0391;EPPR=118.098;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=58.9811;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=0.962264;PAO=0;PQA=0;PQR=0;PRO=0;QA=245;QR=2105;RO=53;RPL=0;RPP=16.0391;RPPR=118.098;RPR=6;RUN=1;SAF=6;SAP=16.0391;SAR=0;SRF=53;SRP=118.098;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:41:38,3:38:1506:3:123:0,-0.877441,-122.986 0/0:3:3,0:3:122:0:0:0,-0.90309,-11.3725 0/1:15:12,3:12:477:3:122:-6.85704,0,-38.7641 dDocent_Contig_11317 10 . G A 2157.2 . AB=0.0504202;ABP=211.928;AC=0;AF=0;AN=6;AO=6;CIGAR=1X1M1X;DP=141;DPB=141;DPRA=0;EPP=16.0391;EPPR=133.299;GTI=0;LEN=1;MEANALT=2;MQM=60;MQMR=60;NS=3;NUMALT=2;ODDS=1.38778e-17;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=240;QR=2399;RO=60;RPL=0;RPP=16.0391;RPPR=133.299;RPR=6;RUN=1;SAF=6;SAP=16.0391;SAR=0;SRF=60;SRP=133.299;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|0:58:28,1,29:28:1113:1,29:40,1138:-85.1308,-90.2643,-181.596,0,-88.3326,-82.8979 0|0:22:6,0,16:6:242:0,16:0,608:-48.4173,-50.2235,-70.1781,0,-20.3511,-15.5347 0|0:61:26,5,30:26:1044:5,30:200,1163:-87.6946,-79.0445,-163.573,0,-69.5532,-76.9973 dDocent_Contig_11318 29 . A G 51.3274 . AB=0.153846;ABP=30.0702;AC=1;AF=0.166667;AN=6;AO=4;CIGAR=1X;DP=66;DPB=66;DPRA=1.3;EPP=11.6962;EPPR=137.642;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=160;QR=2475;RO=62;RPL=0;RPP=11.6962;RPPR=137.642;RPR=4;RUN=1;SAF=4;SAP=11.6962;SAR=0;SRF=62;SRP=137.642;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:25:25,0:25:1010:0:0:0,-7.52575,-91.1939 0/0:15:15,0:15:602:0:0:0,-4.51545,-54.5183 0/1:26:22,4:22:863:4:160:-6.95665,0,-70.1496 dDocent_Contig_11319 69 . C A 1188.42 . AB=0.405941;ABP=10.7717;AC=4;AF=0.666667;AN=6;AO=43;CIGAR=1X;DP=103;DPB=103;DPRA=0;EPP=96.3836;EPPR=133.299;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=1686;QR=2348;RO=60;RPL=43;RPP=96.3836;RPPR=133.299;RPR=0;RUN=1;SAF=43;SAP=96.3836;SAR=0;SRF=60;SRP=133.299;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:50:35,15:35:1370:15:593:-38.6531,0,-108.505 1/1:2:0,2:0:0:2:82:-7.77968,-0.60206,0 0/1:51:25,26:25:978:26:1011:-75.9314,0,-72.9673 dDocent_Contig_11320 36 . C T 644.121 . AB=0.166667;ABP=14.5915;AC=0;AF=0;AN=6;AO=2;CIGAR=2X2M1X2M2X;DP=71;DPB=75.2222;DPRA=0;EPP=7.35324;EPPR=44.2683;GTI=0;LEN=1;MEANALT=2;MQM=13;MQMR=60;NS=3;NUMALT=3;ODDS=0;PAIRED=0;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=79;QR=754;RO=19;RPL=0;RPP=7.35324;RPPR=44.2683;RPR=2;RUN=1;SAF=2;SAP=7.35324;SAR=0;SRF=19;SRP=44.2683;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|0:45:11,22,0,12:11:434:22,0,12:546,0,488:-39.1101,-4.5572,-33.6366,-42.4214,-40.2592,-78.1549,-2.10463,0,-37.8687,-34.2564 0|0:12:2,8,2,0:2:82:8,2,0:271,79,0:-20.4394,0,-4.4997,-19.3439,-5.31144,-25.5272,-21.0415,-6.90794,-26.1293,-27.8304 0|0:14:6,7,0,0:6:238:7,0,0:179,0,0:-10.3839,0,-17.6872,-12.1901,-19.7944,-31.8586,-12.1901,-19.7944,-31.8586,-31.8586 dDocent_Contig_11321 42 . C T 61.7616 . AB=0.172414;ABP=30.0414;AC=1;AF=0.166667;AN=6;AO=8;CIGAR=1X;DP=106;DPB=106;DPRA=2.15;EPP=20.3821;EPPR=215.815;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=0;PAIREDR=0.183673;PAO=0;PQA=0;PQR=0;PRO=0;QA=303;QR=3862;RO=98;RPL=0;RPP=20.3821;RPPR=215.815;RPR=8;RUN=1;SAF=8;SAP=20.3821;SAR=0;SRF=98;SRP=215.815;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:57:54,3:54:2125:3:121:0,-5.87851,-180.15 0/0:20:20,0:20:773:0:0:0,-6.0206,-69.8773 0/1:29:24,5:24:964:5:182:-8.00007,0,-78.3279 dDocent_Contig_11322 18 . C G 1872.19 . AB=0.0283688;ABP=547.85;AC=0;AF=0;AN=6;AO=8;CIGAR=1X3M1X2M;DP=403;DPB=403;DPRA=0;EPP=20.3821;EPPR=517.685;GTI=0;LEN=1;MEANALT=7.5;MQM=35;MQMR=38.5809;NS=3;NUMALT=3;ODDS=0;PAIRED=0;PAIREDR=0.116183;PAO=0;PQA=0;PQR=0;PRO=0;QA=280;QR=9531;RO=241;RPL=0;RPP=20.3821;RPPR=526.335;RPR=8;RUN=1;SAF=8;SAP=20.3821;SAR=0;SRF=240;SRP=517.685;SRR=1;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|0:202:121,2,20,37:121:4777:2,20,37:70,780,1397:-75.5288,-106.797,-401.482,-92.4736,-382.573,-381.708,0,-290.18,-275.827,-284.199 0|0:80:43,6,7,20:43:1701:6,7,20:210,272,778:-50.2681,-47.7423,-159.251,-59.7946,-157.611,-170.971,0,-97.9055,-109.934,-107.356 0|0:121:77,0,9,28:77:3053:0,9,28:0,352,1098:-66.9453,-90.1246,-283.657,-82.5462,-276.043,-273.333,0,-193.622,-186.01,-185.193 dDocent_Contig_11324 12 . T C 1089.11 . AB=0.357143;ABP=22.8638;AC=3;AF=0.5;AN=6;AO=40;CIGAR=1X9M;DP=112;DPB=112;DPRA=0;EPP=89.8692;EPPR=118.098;GTI=0;LEN=1;MEANALT=2.33333;MQM=60;MQMR=60;NS=3;NUMALT=2;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=1584;QR=2076;RO=53;RPL=0;RPP=89.8692;RPPR=118.098;RPR=40;RUN=1;SAF=40;SAP=89.8692;SAR=0;SRF=53;SRP=118.098;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|1:61:28,14,19:28:1087:14,19:555,766:-54.7148,-17.7912,-102.868,0,-43.9384,-83.5771 0|1:15:3,3,9:3:119:3,9:116,362:-28.9553,-20.8948,-29.7864,0,-0.853993,-7.10202 0|1:36:22,0,12:22:870:0,12:0,456:-30.7441,-37.3668,-108.971,0,-71.5847,-67.9723 dDocent_Contig_11325 8 . A T 219.373 . AB=0.244444;ABP=28.5372;AC=3;AF=0.5;AN=6;AO=11;CIGAR=1X;DP=45;DPB=45;DPRA=0;EPP=26.8965;EPPR=76.8404;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=424;QR=1297;RO=34;RPL=0;RPP=26.8965;RPPR=76.8404;RPR=11;RUN=1;SAF=11;SAP=26.8965;SAR=0;SRF=34;SRP=76.8404;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:19:14,5:14:543:5:192:-11.9304,0,-43.4966 0/1:12:11,1:11:416:1:39:-0.284205,0,-34.1786 0/1:14:9,5:9:338:5:193:-13.5269,0,-26.5565 dDocent_Contig_11326 114 . A C 418.572 . AB=0.222222;ABP=45.2334;AC=4;AF=0.666667;AN=6;AO=21;CIGAR=1X;DP=70;DPB=70;DPRA=0;EPP=48.6112;EPPR=109.412;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=704;QR=1704;RO=49;RPL=0;RPP=48.6112;RPPR=109.412;RPR=21;RUN=1;SAF=0;SAP=48.6112;SAR=21;SRF=0;SRP=109.412;SRR=49;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 1/1:7:0,7:0:0:7:245:-22.3912,-2.10721,0 0/1:20:14,6:14:481:6:200:-12.3063,0,-37.5963 0/1:43:35,8:35:1223:8:259:-10.6825,0,-97.4275 dDocent_Contig_11327 59 . G A 623.795 . AB=0.320988;ABP=25.5561;AC=3;AF=0.5;AN=6;AO=26;CIGAR=1X;DP=81;DPB=81;DPRA=0;EPP=59.4686;EPPR=122.441;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=1013;QR=2159;RO=55;RPL=26;RPP=59.4686;RPPR=122.441;RPR=0;RUN=1;SAF=26;SAP=59.4686;SAR=0;SRF=55;SRP=122.441;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:49:29,20:29:1111:20:770:-54.8638,0,-85.5133 0/1:4:3,1:3:123:1:40:-2.79156,0,-10.2607 0/1:28:23,5:23:925:5:203:-10.2242,0,-75.1244 dDocent_Contig_11328 147 . G A 792.488 . AB=0.588235;ABP=6.45911;AC=4;AF=0.666667;AN=6;AO=31;CIGAR=1X;DP=52;DPB=52;DPRA=0;EPP=70.3259;EPPR=48.6112;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=1079;QR=753;RO=21;RPL=0;RPP=70.3259;RPPR=48.6112;RPR=31;RUN=1;SAF=0;SAP=70.3259;SAR=31;SRF=0;SRP=48.6112;SRR=21;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:23:7,16:7:252:16:561:-43.8957,0,-16.1053 1/1:1:0,1:0:0:1:36:-3.59827,-0.30103,0 0/1:28:14,14:14:501:14:482:-35.277,0,-36.9981 dDocent_Contig_11330 15 . G C 250.982 . AB=0.15;ABP=24.2907;AC=0;AF=0;AN=6;AO=3;CIGAR=1X3M1X;DP=82;DPB=82;DPRA=0;EPP=9.52472;EPPR=70.0157;GTI=0;LEN=1;MEANALT=3;MQM=60;MQMR=59.619;NS=3;NUMALT=3;ODDS=0;PAIRED=0;PAIREDR=0.785714;PAO=0;PQA=0;PQR=0;PRO=0;QA=113;QR=1644;RO=42;RPL=0;RPP=9.52472;RPPR=94.2121;RPR=3;RUN=1;SAF=3;SAP=9.52472;SAR=0;SRF=39;SRP=70.0157;SRR=3;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|0:41:20,0,8,13:20:792:0,8,13:0,180,364:-19.3489,-25.3695,-90.6361,-13.757,-79.0305,-76.6223,0,-65.3286,-53.7524,-61.4152 0|0:20:7,3,4,6:7:272:3,4,6:113,99,163:-9.11564,-1.93002,-23.4267,-4.61813,-17.728,-25.7939,0,-13.1164,-15.8084,-20.5805 0|0:21:15,0,2,4:15:580:0,2,4:0,44,98:-2.03996,-6.55541,-54.3215,-3.7452,-51.5182,-50.9162,0,-47.811,-45.0156,-46.6069 dDocent_Contig_11331 107 . N T 126.898 . AB=0;ABP=0;AC=4;AF=1;AN=4;AO=5;CIGAR=1X;DP=5;DPB=5;DPRA=0;EPP=13.8677;EPPR=0;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=0;NS=2;NUMALT=1;ODDS=0;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=132;QR=0;RO=0;RPL=0;RPP=13.8677;RPPR=0;RPR=5;RUN=1;SAF=0;SAP=13.8677;SAR=5;SRF=0;SRP=0;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 1/1:2:0,2:0:0:2:42:-3.98966,-0.60206,0 ./.:.:.:.:.:.:.:. 1/1:3:0,3:0:0:3:90:-8.39828,-0.90309,0 dDocent_Contig_11332 19 . C T 52.0424 . AB=0.122449;ABP=63.6786;AC=1;AF=0.166667;AN=6;AO=12;CIGAR=1X1M1X3M1X;DP=144;DPB=144;DPRA=8.5;EPP=29.068;EPPR=285.302;GTI=0;LEN=1;MEANALT=1.5;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=0.953846;PAO=0;PQA=0;PQR=0;PRO=0;QA=476;QR=5099;RO=130;RPL=0;RPP=29.068;RPPR=285.302;RPR=12;RUN=1;SAF=12;SAP=29.068;SAR=0;SRF=130;SRP=285.302;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|0:87:81,6:81:3177:6:237:0,-4.48722,-264.34 0|0:8:7,0:7:272:0:0:0,-2.10721,-24.4387 0|1:49:42,6:42:1650:6:239:-7.02813,0,-133.889 dDocent_Contig_11333 15 . T C 476.321 . AB=0.367347;ABP=10.4997;AC=3;AF=0.5;AN=6;AO=18;CIGAR=1X7M;DP=49;DPB=49;DPRA=0;EPP=42.0968;EPPR=59.4686;GTI=0;LEN=1;MEANALT=2;MQM=60;MQMR=60;NS=3;NUMALT=3;ODDS=0;PAIRED=0;PAIREDR=0.730769;PAO=0;PQA=0;PQR=0;PRO=0;QA=724;QR=1020;RO=26;RPL=0;RPP=42.0968;RPPR=59.4686;RPR=18;RUN=1;SAF=18;SAP=42.0968;SAR=0;SRF=26;SRP=59.4686;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|1:23:15,2,2,3:15:587:2,2,3:80,81,118:-5.23422,-3.13351,-50.8642,-8.44287,-50.1158,-56.1046,0,-41.7549,-46.9999,-47.4458 0|1:8:1,0,0,7:1:40:0,0,7:0,0,283:-23.4351,-23.7362,-27.0307,-23.7362,-27.0307,-27.0307,0,-3.69465,-3.69465,-1.58744 0|1:18:10,0,0,8:10:393:0,0,8:0,0,323:-24.0202,-27.0305,-59.3495,-27.0305,-59.3495,-59.3495,0,-32.7175,-32.7175,-30.3093 dDocent_Contig_11334 8 . A C 51.0807 . AB=0.147059;ABP=39.7976;AC=2;AF=0.333333;AN=6;AO=5;CIGAR=1X2M1X;DP=37;DPB=37;DPRA=5.66667;EPP=13.8677;EPPR=72.4974;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=199;QR=1251;RO=32;RPL=0;RPP=13.8677;RPPR=72.4974;RPR=5;RUN=1;SAF=5;SAP=13.8677;SAR=0;SRF=32;SRP=72.4974;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|1:20:18,2:18:702:2:80:-1.57119,0,-57.4914 0|0:3:3,0:3:118:0:0:0,-0.90309,-11.0027 0|1:14:11,3:11:431:3:119:-6.88097,0,-34.9314 dDocent_Contig_11335 18 . A G 45.7794 . AB=0.119048;ABP=55.9529;AC=1;AF=0.166667;AN=6;AO=9;CIGAR=1X;DP=124;DPB=124;DPRA=1.7963;EPP=22.5536;EPPR=244.119;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=0.982609;PAO=0;PQA=0;PQR=0;PRO=0;QA=365;QR=4582;RO=115;RPL=0;RPP=22.5536;RPPR=252.73;RPR=9;RUN=1;SAF=9;SAP=22.5536;SAR=0;SRF=114;SRP=244.119;SRR=1;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:42:37,5:37:1468:5:204:-6.10077,0,-119.724 0/0:55:51,4:51:2022:4:161:0,-1.68117,-167.303 0/0:27:27,0:27:1092:0:0:0,-8.12781,-98.5636 dDocent_Contig_11336 8 . A G 67.271 . AB=0.126437;ABP=108.464;AC=2;AF=0.333333;AN=6;AO=13;CIGAR=1X;DP=123;DPB=123;DPRA=0;EPP=31.2394;EPPR=241.872;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=0.727273;PAO=0;PQA=0;PQR=0;PRO=0;QA=472;QR=4164;RO=110;RPL=0;RPP=31.2394;RPPR=241.872;RPR=13;RUN=1;SAF=13;SAP=31.2394;SAR=0;SRF=110;SRP=241.872;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:74:65,9:65:2488:9:334:-8.13157,0,-201.848 0/0:36:34,2:34:1272:2:76:0,-3.62241,-107.55 0/1:13:11,2:11:404:2:62:-1.97326,0,-32.7897 dDocent_Contig_11337 133 . A T 1083.76 . AB=0.637681;ABP=14.3712;AC=3;AF=0.5;AN=6;AO=44;CIGAR=1X;DP=69;DPB=69;DPRA=0;EPP=98.5551;EPPR=55.1256;GTI=0;LEN=1;MEANALT=1.33333;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=1486;QR=804;RO=24;RPL=0;RPP=98.5551;RPPR=55.1256;RPR=44;RUN=1;SAF=0;SAP=98.5551;SAR=44;SRF=0;SRP=55.1256;SRR=24;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:42:15,27:15:518:27:902:-68.8434,0,-34.3052 0/1:8:2,6:2:70:6:210:-16.8342,0,-4.23909 0/1:19:7,11:7:216:11:374:-28.2203,0,-13.9781 dDocent_Contig_11338 11 . G A 1547.14 . AB=0.327778;ABP=49.3833;AC=3;AF=0.5;AN=6;AO=59;CIGAR=1X;DP=180;DPB=180;DPRA=0;EPP=131.127;EPPR=263.587;GTI=0;LEN=1;MEANALT=1.33333;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=1.38778e-17;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=2373;QR=4765;RO=120;RPL=0;RPP=131.127;RPPR=263.587;RPR=59;RUN=1;SAF=59;SAP=131.127;SAR=0;SRF=120;SRP=263.587;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:124:78,45:78:3121:45:1803:-125.044,0,-243.523 0/1:9:7,2:7:264:2:82:-5.07041,0,-21.4015 0/1:47:35,12:35:1380:12:488:-30.1225,0,-110.301 dDocent_Contig_11341 111 . T A 60.5152 . AB=0.266667;ABP=10.1038;AC=1;AF=0.166667;AN=6;AO=4;CIGAR=1X;DP=47;DPB=47;DPRA=0.9375;EPP=11.6962;EPPR=96.3836;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=134;QR=1468;RO=43;RPL=0;RPP=11.6962;RPPR=96.3836;RPR=4;RUN=1;SAF=0;SAP=11.6962;SAR=4;SRF=0;SRP=96.3836;SRR=43;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:18:18,0:18:624:0:0:0,-5.41854,-56.4857 0/0:14:14,0:14:462:0:0:0,-4.21442,-41.8966 0/1:15:11,4:11:382:4:134:-7.87543,0,-30.1988 dDocent_Contig_11342 54 . T C 406.786 . AB=0.315789;ABP=19.8106;AC=2;AF=0.333333;AN=6;AO=18;CIGAR=1X;DP=58;DPB=58;DPRA=28.5;EPP=42.0968;EPPR=89.8692;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=674;QR=1550;RO=40;RPL=18;RPP=42.0968;RPPR=89.8692;RPR=0;RUN=1;SAF=18;SAP=42.0968;SAR=0;SRF=40;SRP=89.8692;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:40:28,12:28:1076:12:438:-27.7056,0,-85.0936 0/0:1:1,0:1:39:0:0:0,-0.30103,-3.89656 0/1:17:11,6:11:435:6:236:-16.4951,0,-34.3876 dDocent_Contig_11343 73 . T C 494.081 . AB=0.389831;ABP=9.23028;AC=3;AF=0.5;AN=6;AO=23;CIGAR=1X;DP=59;DPB=59;DPRA=0;EPP=52.9542;EPPR=79.0118;GTI=0;LEN=1;MEANALT=1.33333;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=795;QR=1202;RO=35;RPL=23;RPP=52.9542;RPPR=79.0118;RPR=0;RUN=1;SAF=23;SAP=52.9542;SAR=0;SRF=35;SRP=79.0118;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:37:21,16:21:730:16:571:-40.5825,0,-54.8818 0/1:4:3,1:3:106:1:35:-2.29451,0,-8.68504 0/1:18:11,6:11:366:6:189:-11.9861,0,-27.9326 dDocent_Contig_11344 9 . T C 1616.93 . AB=0.0689655;ABP=49.8093;AC=0;AF=0;AN=6;AO=2;CIGAR=3X;DP=94;DPB=94;DPRA=0;EPP=7.35324;EPPR=39.9253;GTI=0;LEN=1;MEANALT=3;MQM=15;MQMR=60;NS=3;NUMALT=3;ODDS=0;PAIRED=0;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=79;QR=668;RO=17;RPL=0;RPP=7.35324;RPPR=39.9253;RPR=2;RUN=1;SAF=2;SAP=7.35324;SAR=0;SRF=17;SRP=39.9253;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|0:39:7,0,27,4:7:279:0,27,4:0,1082,164:-79.0673,-81.1745,-104.161,0,-23.0798,-14.952,-76.0622,-99.0446,-18.0176,-97.8405 0|0:26:3,0,21,2:3:120:0,21,2:0,812,81:-54.9995,-55.9026,-65.7969,0,-9.98412,-3.66249,-52.2868,-62.1809,-6.42611,-61.5789 0|0:29:7,2,12,8:7:269:2,12,8:79,467,328:-33.1458,-33.1696,-54.6742,0,-20.0902,-18.5594,-25.9423,-45.966,-12.88,-45.6322 dDocent_Contig_11347 65 . T G 351.191 . AB=0.310345;ABP=21.1309;AC=2;AF=0.5;AN=4;AO=18;CIGAR=1X;DP=58;DPB=58;DPRA=0;EPP=42.0968;EPPR=89.8692;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=2;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=618;QR=1321;RO=40;RPL=18;RPP=42.0968;RPPR=89.8692;RPR=0;RUN=1;SAF=18;SAP=42.0968;SAR=0;SRF=40;SRP=89.8692;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:32:19,13:19:634:13:449:-31.1022,0,-47.7395 ./.:.:.:.:.:.:.:. 0/1:26:21,5:21:687:5:169:-7.71586,0,-54.3044 dDocent_Contig_11348 9 . T C 510.792 . AB=0.280702;ABP=26.8203;AC=2;AF=0.333333;AN=6;AO=16;CIGAR=1X2M2X3M1D3M;DP=57;DPB=55.6667;DPRA=0;EPP=37.7539;EPPR=52.9542;GTI=0;LEN=1;MEANALT=2;MQM=24;MQMR=60;NS=3;NUMALT=2;ODDS=0;PAIRED=0;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=384;QR=887;RO=23;RPL=0;RPP=37.7539;RPPR=52.9542;RPR=16;RUN=1;SAF=16;SAP=37.7539;SAR=0;SRF=23;SRP=52.9542;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|0:36:11,8,16:11:424:8,16:192,617:-47.443,-38.0997,-70.5071,0,-22.2607,-30.0848 0|1:8:4,4,0:4:155:4,0:96,0:-5.36115,0,-11.9172,-6.56527,-13.1213,-19.388 0|1:13:8,4,1:8:308:4,1:96,40:-3.79538,0,-24.0697,-2.87062,-21.9771,-27.9731 dDocent_Contig_11349 10 . C T 188.66 . AB=0.169231;ABP=64.7803;AC=1;AF=0.166667;AN=6;AO=14;CIGAR=1X;DP=112;DPB=112;DPRA=0;EPP=33.4109;EPPR=215.815;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=0.938776;PAO=0;PQA=0;PQR=0;PRO=0;QA=562;QR=3895;RO=98;RPL=0;RPP=33.4109;RPPR=215.815;RPR=14;RUN=1;SAF=14;SAP=33.4109;SAR=0;SRF=98;SRP=215.815;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:65:54,11:54:2142:11:440:-20.3876,0,-173.386 0/0:21:20,1:20:804:1:40:0,-2.32595,-68.6825 0/0:26:24,2:24:949:2:82:0,-0.0471021,-77.93 dDocent_Contig_11350 1 . N G 73.1023 . AB=0;ABP=0;AC=2;AF=1;AN=2;AO=2;CIGAR=1X;DP=2;DPB=2;DPRA=0;EPP=7.35324;EPPR=0;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=0;NS=1;NUMALT=1;ODDS=5.99146;PAIRED=1;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=77;QR=0;RO=0;RPL=0;RPP=7.35324;RPPR=0;RPR=2;RUN=1;SAF=2;SAP=7.35324;SAR=0;SRF=0;SRP=0;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL ./.:.:.:.:.:.:.:. ./.:.:.:.:.:.:.:. 1/1:2:0,2:0:0:2:77:-7.30914,-0.60206,0 dDocent_Contig_11351 20 . A C 228.198 . AB=0.255814;ABP=25.2805;AC=3;AF=0.5;AN=6;AO=11;CIGAR=1X;DP=43;DPB=43;DPRA=0;EPP=26.8965;EPPR=72.4974;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=445;QR=1285;RO=32;RPL=0;RPP=26.8965;RPPR=72.4974;RPR=11;RUN=1;SAF=11;SAP=26.8965;SAR=0;SRF=32;SRP=72.4974;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:25:19,6:19:758:6:241:-14.5394,0,-61.0148 0/1:6:5,1:5:203:1:41:-2.28839,0,-16.8469 0/1:12:8,4:8:324:4:163:-11.4461,0,-25.9168 dDocent_Contig_11352 43 . T C 499.253 . AB=0.236559;ABP=59.0716;AC=2;AF=0.333333;AN=6;AO=24;CIGAR=1X;DP=119;DPB=119;DPRA=0;EPP=55.1256;EPPR=209.3;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=6.93889e-18;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=973;QR=3777;RO=95;RPL=0;RPP=55.1256;RPPR=209.3;RPR=24;RUN=1;SAF=24;SAP=55.1256;SAR=0;SRF=95;SRP=209.3;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:81:63,18:63:2517:18:733:-41.9103,0,-202.287 0/1:12:8,4:8:314:4:164:-11.5375,0,-25.0122 0/0:26:24,2:24:946:2:76:0,-0.611969,-78.2309 dDocent_Contig_11353 12 . G C 357.976 . AB=0.142857;ABP=196.892;AC=2;AF=0.333333;AN=6;AO=28;CIGAR=1X;DP=260;DPB=260;DPRA=0;EPP=63.8115;EPPR=504.62;GTI=0;LEN=1;MEANALT=1.33333;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=0.987013;PAO=0;PQA=0;PQR=0;PRO=0;QA=1115;QR=9201;RO=231;RPL=0;RPP=63.8115;RPPR=504.62;RPR=28;RUN=1;SAF=28;SAP=63.8115;SAR=0;SRF=231;SRP=504.62;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:153:130,23:130:5173:23:923:-37.3098,0,-419.375 0/1:22:20,2:20:798:2:79:-0.874584,0,-65.5144 0/0:85:81,3:81:3230:3:113:0,-15.1508,-280.213 dDocent_Contig_11356 23 . T C 61.2768 . AB=0.173913;ABP=24.253;AC=1;AF=0.166667;AN=6;AO=4;CIGAR=1X;DP=72;DPB=72;DPRA=0.938776;EPP=11.6962;EPPR=150.67;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=0.955882;PAO=0;PQA=0;PQR=0;PRO=0;QA=161;QR=2695;RO=68;RPL=0;RPP=11.6962;RPPR=150.67;RPR=4;RUN=1;SAF=4;SAP=11.6962;SAR=0;SRF=68;SRP=150.67;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:18:18,0:18:717:0:0:0,-5.41854,-64.8561 0/0:31:31,0:31:1226:0:0:0,-9.33193,-110.612 0/1:23:19,4:19:752:4:161:-7.95158,0,-61.0777 dDocent_Contig_11357 12 . A G 933.247 . AB=0.464789;ABP=3.7749;AC=3;AF=0.5;AN=6;AO=33;CIGAR=1X;DP=71;DPB=71;DPRA=0;EPP=74.6689;EPPR=85.5263;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=1324;QR=1460;RO=38;RPL=0;RPP=74.6689;RPPR=85.5263;RPR=33;RUN=1;SAF=33;SAP=74.6689;SAR=0;SRF=38;SRP=85.5263;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:27:11,16:11:435:16:649:-50.6155,0,-31.3725 0/1:17:7,10:7:257:10:391:-30.4261,0,-18.3614 0/1:27:20,7:20:768:7:284:-17.806,0,-61.3088 dDocent_Contig_11359 10 . C A 228.415 . AB=0.3;ABP=13.4334;AC=1;AF=0.166667;AN=6;AO=9;CIGAR=1X;DP=53;DPB=53;DPRA=2.6087;EPP=22.5536;EPPR=98.5551;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=367;QR=1777;RO=44;RPL=0;RPP=22.5536;RPPR=98.5551;RPR=9;RUN=1;SAF=9;SAP=22.5536;SAR=0;SRF=44;SRP=98.5551;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:30:21,9:21:854:9:367:-24.3644,0,-68.139 0/0:15:15,0:15:609:0:0:0,-4.51545,-55.1482 0/0:8:8,0:8:314:0:0:0,-2.40824,-28.6217 dDocent_Contig_11362 27 . G A 172.888 . AB=0.225;ABP=29.2851;AC=1;AF=0.166667;AN=6;AO=9;CIGAR=1X;DP=62;DPB=62;DPRA=3.63636;EPP=22.5536;EPPR=118.098;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=0.90566;PAO=0;PQA=0;PQR=0;PRO=0;QA=339;QR=2062;RO=53;RPL=0;RPP=22.5536;RPPR=118.098;RPR=9;RUN=1;SAF=9;SAP=22.5536;SAR=0;SRF=53;SRP=118.098;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:40:31,9:31:1200:9:339:-18.8116,0,-96.224 0/0:7:7,0:7:273:0:0:0,-2.10721,-24.9344 0/0:15:15,0:15:589:0:0:0,-4.51545,-53.3399 dDocent_Contig_11363 111 . T G 69.6796 . AB=0.25;ABP=13.8677;AC=2;AF=0.333333;AN=6;AO=5;CIGAR=1X;DP=33;DPB=33;DPRA=0.769231;EPP=13.8677;EPPR=63.8115;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=1.73472e-18;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=175;QR=959;RO=28;RPL=0;RPP=13.8677;RPPR=63.8115;RPR=5;RUN=1;SAF=0;SAP=13.8677;SAR=5;SRF=0;SRP=63.8115;SRR=28;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:16:12,4:12:415:4:140:-8.12845,0,-32.8655 0/1:4:3,1:3:105:1:35:-2.29451,0,-8.59204 0/0:13:13,0:13:439:0:0:0,-3.91339,-39.834 dDocent_Contig_11364 47 . A G 31.5463 . AB=0.1;ABP=44.7026;AC=1;AF=0.166667;AN=6;AO=3;CIGAR=2X3M1X;DP=53;DPB=53;DPRA=2.14286;EPP=9.52472;EPPR=98.736;GTI=0;LEN=1;MEANALT=1;MQM=46;MQMR=60;NS=3;NUMALT=2;ODDS=0;PAIRED=0;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=99;QR=1872;RO=48;RPL=3;RPP=9.52472;RPPR=98.736;RPR=0;RUN=1;SAF=3;SAP=9.52472;SAR=0;SRF=48;SRP=107.241;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|1:30:27,3,0:27:1073:3,0:99,0:-0.0878366,0,-87.8357,-8.21565,-88.7388,-96.6217 0|0:14:14,0,0:14:531:0,0:0,0:0,-4.21442,-48.1287,-4.21442,-48.1287,-48.1287 0|0:9:7,0,2:7:268:0,2:0,81:-4.97646,-7.08367,-29.0558,0,-22.3717,-21.7696 dDocent_Contig_11365 14 . C A 77.6803 . AB=0;ABP=0;AC=2;AF=0.333333;AN=6;AO=2;CIGAR=1X1M1X;DP=26;DPB=26;DPRA=0.166667;EPP=3.0103;EPPR=55.1256;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=0;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=80;QR=942;RO=24;RPL=0;RPP=7.35324;RPPR=55.1256;RPR=2;RUN=1;SAF=1;SAP=3.0103;SAR=1;SRF=24;SRP=55.1256;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|0:13:13,0:13:525:0:0:0,-3.91339,-47.5967 1|1:2:0,2:0:0:2:80:-7.59157,-0.60206,0 0|0:11:11,0:11:417:0:0:0,-3.31133,-37.8723 dDocent_Contig_11366 11 . T A 618.09 . AB=0.531915;ABP=3.42611;AC=3;AF=0.5;AN=6;AO=25;CIGAR=1X;DP=47;DPB=47;DPRA=0;EPP=57.2971;EPPR=50.7827;GTI=0;LEN=1;MEANALT=1;MQM=55.56;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=0.84;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=916;QR=864;RO=22;RPL=0;RPP=57.2971;RPPR=50.7827;RPR=25;RUN=1;SAF=25;SAP=57.2971;SAR=0;SRF=22;SRP=50.7827;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:30:16,14:16:628:14:509:-35.1402,0,-47.8172 0/1:5:1,4:1:41:4:148:-12.1768,0,-2.58942 0/1:12:5,7:5:195:7:259:-19.9792,0,-14.3095 dDocent_Contig_11368 25 . C A 150.488 . AB=0.157895;ABP=80.269;AC=1;AF=0.166667;AN=6;AO=22;CIGAR=1X;DP=309;DPB=309;DPRA=0;EPP=50.7827;EPPR=626.223;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=829;QR=11278;RO=287;RPL=0;RPP=50.7827;RPPR=626.223;RPR=22;RUN=1;SAF=22;SAP=50.7827;SAR=0;SRF=287;SRP=626.223;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:152:144,8:144:5637:8:320:0,-16.5889,-477.999 0/1:76:64,12:64:2525:12:438:-16.8728,0,-204.518 0/0:81:79,2:79:3116:2:71:0,-17.6415,-273.774 dDocent_Contig_11369 68 . T A 365.37 . AB=0.302326;ABP=17.6046;AC=4;AF=0.666667;AN=6;AO=16;CIGAR=1X;DP=46;DPB=46;DPRA=0;EPP=37.7539;EPPR=65.983;GTI=0;LEN=1;MEANALT=1.33333;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=578;QR=1049;RO=29;RPL=16;RPP=37.7539;RPPR=65.983;RPR=0;RUN=1;SAF=16;SAP=37.7539;SAR=0;SRF=29;SRP=65.983;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:27:18,8:18:655:8:292:-18.4347,0,-51.0856 1/1:3:0,3:0:0:3:107:-9.98201,-0.90309,0 0/1:16:11,5:11:394:5:179:-11.643,0,-30.984 dDocent_Contig_11371 8 . A T 255.684 . AB=0.168421;ABP=93.7321;AC=1;AF=0.166667;AN=6;AO=16;CIGAR=1X;DP=135;DPB=135;DPRA=4.75;EPP=37.7539;EPPR=261.416;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=615;QR=4547;RO=119;RPL=0;RPP=37.7539;RPPR=261.416;RPR=16;RUN=1;SAF=16;SAP=37.7539;SAR=0;SRF=119;SRP=261.416;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:95:79,16:79:3002:16:615:-27.0913,0,-241.747 0/0:7:7,0:7:266:0:0:0,-2.10721,-24.301 0/0:33:33,0:33:1279:0:0:0,-9.93399,-115.4 dDocent_Contig_11372 7 . C T 975.701 . AB=0.4875;ABP=3.11887;AC=3;AF=0.5;AN=6;AO=39;CIGAR=1X;DP=80;DPB=80;DPRA=0;EPP=87.6977;EPPR=92.0407;GTI=0;LEN=1;MEANALT=1;MQM=51.8718;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=0.0769231;PAIREDR=0.97561;PAO=0;PQA=0;PQR=0;PRO=0;QA=1478;QR=1559;RO=41;RPL=0;RPP=87.6977;RPPR=92.0407;RPR=39;RUN=1;SAF=39;SAP=87.6977;SAR=0;SRF=41;SRP=92.0407;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:47:17,30:17:642:30:1129:-80.8692,0,-43.96 0/1:8:5,3:5:186:3:116:-8.40946,0,-14.6916 0/1:25:19,6:19:731:6:233:-13.8143,0,-58.5946 dDocent_Contig_11373 17 . C G 218.539 . AB=0.277778;ABP=18.4519;AC=2;AF=0.333333;AN=6;AO=12;CIGAR=1X;DP=67;DPB=67;DPRA=0;EPP=29.068;EPPR=122.441;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=473;QR=2194;RO=55;RPL=0;RPP=29.068;RPPR=122.441;RPR=12;RUN=1;SAF=12;SAP=29.068;SAR=0;SRF=55;SRP=122.441;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:31:29,2:29:1158:2:79:0,-1.83469,-96.9994 0/1:20:17,3:17:671:3:122:-5.35189,0,-54.7009 0/1:16:9,7:9:365:7:272:-20.0248,0,-28.3984 dDocent_Contig_11374 9 . T G 420.732 . AB=0.273973;ABP=35.4039;AC=3;AF=0.5;AN=6;AO=20;CIGAR=1X;DP=73;DPB=73;DPRA=0;EPP=46.4397;EPPR=115.927;GTI=0;LEN=1;MEANALT=1.33333;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=0.903846;PAO=0;PQA=0;PQR=0;PRO=0;QA=761;QR=1981;RO=52;RPL=0;RPP=46.4397;RPPR=115.927;RPR=20;RUN=1;SAF=20;SAP=46.4397;SAR=0;SRF=52;SRP=115.927;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:21:14,6:14:533:6:233:-15.0086,0,-41.9882 0/1:14:10,4:10:382:4:156:-10.2029,0,-30.5201 0/1:38:28,10:28:1066:10:372:-22.3847,0,-84.8028 dDocent_Contig_11375 8 . A G 400.922 . AB=0.333333;ABP=13.8677;AC=3;AF=0.5;AN=6;AO=15;CIGAR=1X1M;DP=54;DPB=54;DPRA=0;EPP=35.5824;EPPR=68.1545;GTI=0;LEN=1;MEANALT=1.5;MQM=60;MQMR=60;NS=3;NUMALT=2;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=581;QR=1138;RO=30;RPL=0;RPP=35.5824;RPPR=68.1545;RPR=15;RUN=1;SAF=15;SAP=35.5824;SAR=0;SRF=30;SRP=68.1545;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|1:35:21,7,7:21:799:7,7:271,272:-16.0309,-0.0907845,-63.511,0,-43.2645,-63.4213 0|1:9:7,2,0:7:262:2,0:74,0:-4.3165,0,-21.2283,-6.42371,-21.8304,-27.8834 0|1:10:2,0,8:2:77:0,8:0,309:-25.1627,-25.7647,-32.0869,0,-6.70708,-4.29884 dDocent_Contig_11376 28 . A T 540.29 . AB=0.391304;ABP=5.3706;AC=4;AF=0.666667;AN=6;AO=18;CIGAR=1X;DP=32;DPB=32;DPRA=0;EPP=42.0968;EPPR=33.4109;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=704;QR=536;RO=14;RPL=0;RPP=42.0968;RPPR=33.4109;RPR=18;RUN=1;SAF=18;SAP=42.0968;SAR=0;SRF=14;SRP=33.4109;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:13:8,5:8:318:5:201:-14.5573,0,-25.0729 1/1:9:0,9:0:0:9:345:-31.405,-2.70927,0 0/1:10:6,4:6:218:4:158:-11.5896,0,-16.9526 dDocent_Contig_11377 13 . A T 359.616 . AB=0.182609;ABP=103.634;AC=2;AF=0.333333;AN=6;AO=22;CIGAR=1X2M;DP=138;DPB=138;DPRA=0;EPP=50.7827;EPPR=222.329;GTI=0;LEN=1;MEANALT=1.66667;MQM=60;MQMR=59.2673;NS=3;NUMALT=2;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=810;QR=3844;RO=101;RPL=0;RPP=50.7827;RPPR=222.329;RPR=22;RUN=1;SAF=22;SAP=50.7827;SAR=0;SRF=101;SRP=222.329;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|1:80:50,14,16:50:1918:14,16:524,589:-33.1045,-5.24622,-157.506,0,-113.565,-151.654 0|0:23:22,0,1:22:813:0,1:0,36:0,-6.62266,-73.119,-3.32541,-70.1819,-69.8809 0|1:35:29,0,5:29:1113:0,5:0,185:-6.37999,-15.1099,-106.444,0,-91.3111,-89.8059 dDocent_Contig_11378 45 . G T 140.147 . AB=0.37037;ABP=6.95112;AC=2;AF=0.5;AN=4;AO=10;CIGAR=1X;DP=27;DPB=27;DPRA=0;EPP=16.9077;EPPR=37.7539;GTI=0;LEN=1;MEANALT=1.5;MQM=32.7;MQMR=60;NS=2;NUMALT=1;ODDS=0;PAIRED=0;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=352;QR=636;RO=16;RPL=0;RPP=24.725;RPPR=37.7539;RPR=10;RUN=1;SAF=1;SAP=16.9077;SAR=9;SRF=16;SRP=37.7539;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:14:10,3:10:392:3:108:-4.65398,0,-31.3377 ./.:.:.:.:.:.:.:. 0/1:13:6,7:6:244:7:244:-13.0592,0,-18.4254 dDocent_Contig_11379 27 . C T 53.3426 . AB=0.2;ABP=14.7363;AC=1;AF=0.166667;AN=6;AO=3;CIGAR=1X;DP=38;DPB=38;DPRA=1.30435;EPP=9.52472;EPPR=76.8404;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=122;QR=1371;RO=34;RPL=0;RPP=9.52472;RPPR=76.8404;RPR=3;RUN=1;SAF=3;SAP=9.52472;SAR=0;SRF=34;SRP=76.8404;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:15:12,3:12:490:3:122:-6.85704,0,-39.9357 0/0:4:4,0:4:162:0:0:0,-1.20412,-14.9667 0/0:19:18,0:18:719:0:0:0,-5.41854,-64.9296 dDocent_Contig_11380 31 . C A 144.63 . AB=0.222222;ABP=27.1378;AC=2;AF=0.333333;AN=6;AO=8;CIGAR=1X;DP=42;DPB=42;DPRA=3;EPP=20.3821;EPPR=76.8404;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=312;QR=1350;RO=34;RPL=0;RPP=20.3821;RPPR=76.8404;RPR=8;RUN=1;SAF=8;SAP=20.3821;SAR=0;SRF=34;SRP=76.8404;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:22:19,3:19:760:3:109:-3.54335,0,-62.0995 0/0:6:6,0:6:224:0:0:0,-1.80618,-20.5132 0/1:14:9,5:9:366:5:203:-14.4384,0,-29.0907 dDocent_Contig_11383 97 . G A 1034.11 . AB=0.655738;ABP=15.8611;AC=2;AF=0.333333;AN=6;AO=40;CIGAR=1X;DP=63;DPB=63;DPRA=15.25;EPP=89.8692;EPPR=52.9542;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=1385;QR=775;RO=23;RPL=40;RPP=89.8692;RPPR=52.9542;RPR=0;RUN=1;SAF=40;SAP=89.8692;SAR=0;SRF=23;SRP=52.9542;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:40:8,32:8:273:32:1107:-87.8972,0,-12.8616 0/0:2:2,0:2:65:0:0:0,-0.60206,-6.17345 0/1:21:13,8:13:437:8:278:-19.0364,0,-33.3323 dDocent_Contig_11384 20 . G A 103.73 . AB=0.1875;ABP=30.1537;AC=2;AF=0.333333;AN=6;AO=7;CIGAR=1X;DP=52;DPB=52;DPRA=0;EPP=18.2106;EPPR=100.727;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=265;QR=1815;RO=45;RPL=0;RPP=18.2106;RPPR=100.727;RPR=7;RUN=1;SAF=7;SAP=18.2106;SAR=0;SRF=45;SRP=100.727;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:20:19,1:19:769:1:25:0,-3.52074,-67.0309 0/1:8:4,4:4:161:4:158:-12.1917,0,-12.467 0/1:24:22,2:22:885:2:82:-0.554958,0,-72.731 dDocent_Contig_11385 14 . G A 944.507 . AB=0.533333;ABP=3.58936;AC=3;AF=0.5;AN=6;AO=32;CIGAR=1X;DP=60;DPB=60;DPRA=0;EPP=72.4974;EPPR=61.6401;GTI=0;LEN=1;MEANALT=1.33333;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=1300;QR=1086;RO=27;RPL=0;RPP=72.4974;RPPR=61.6401;RPR=32;RUN=1;SAF=32;SAP=72.4974;SAR=0;SRF=27;SRP=61.6401;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:42:20,21:20:811:21:854:-64.4468,0,-60.5823 0/1:5:1,4:1:40:4:163:-13.5533,0,-2.49053 0/1:13:6,7:6:235:7:283:-21.9291,0,-17.6066 dDocent_Contig_11386 45 . T A 83.0948 . AB=0.178571;ABP=28.1373;AC=1;AF=0.166667;AN=6;AO=5;CIGAR=1X;DP=48;DPB=48;DPRA=2.8;EPP=13.8677;EPPR=96.3836;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=202;QR=1720;RO=43;RPL=0;RPP=13.8677;RPPR=96.3836;RPR=5;RUN=1;SAF=5;SAP=13.8677;SAR=0;SRF=43;SRP=96.3836;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:18:18,0:18:715:0:0:0,-5.41854,-64.6754 0/0:2:2,0:2:81:0:0:0,-0.60206,-7.68573 0/1:28:23,5:23:924:5:202:-10.133,0,-75.0315 dDocent_Contig_11387 82 . A G 164.764 . AB=0;ABP=0;AC=0;AF=0;AN=6;AO=11;CIGAR=1X2M1X;DP=206;DPB=206;DPRA=0;EPP=26.8965;EPPR=369.989;GTI=0;LEN=1;MEANALT=5;MQM=60;MQMR=60;NS=3;NUMALT=3;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=410;QR=6249;RO=169;RPL=11;RPP=26.8965;RPPR=369.989;RPR=0;RUN=1;SAF=11;SAP=26.8965;SAR=0;SRF=169;SRP=369.989;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|0:144:122,7,11,2:122:4571:7,11,2:268,405,75:0,-14.7218,-387.004,-3.60981,-356.002,-374.686,-30.581,-382.968,-371.854,-404.361 0|0:11:5,0,0,6:5:189:0,0,6:0,0,236:-18.3002,-19.8054,-35.2914,-19.8054,-35.2914,-35.2914,0,-15.8707,-15.8707,-14.0645 0|0:51:42,4,1,2:42:1489:4,1,2:142,37,74:0,-1.06857,-121.175,-9.61361,-119.351,-130.62,-6.58321,-116.324,-124.867,-127.292 dDocent_Contig_11388 174 . C T 63.2932 . AB=0.166667;ABP=31.9633;AC=2;AF=0.5;AN=4;AO=5;CIGAR=1X;DP=30;DPB=30;DPRA=0;EPP=13.8677;EPPR=57.2971;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=2;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=203;QR=994;RO=25;RPL=5;RPP=13.8677;RPPR=57.2971;RPR=0;RUN=1;SAF=0;SAP=13.8677;SAR=5;SRF=0;SRP=57.2971;SRR=25;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:11:9,2:9:355:2:81:-4.3744,0,-28.9982 ./.:.:.:.:.:.:.:. 0/1:19:16,3:16:639:3:122:-5.65292,0,-52.1237 dDocent_Contig_11389 30 . A C 1397.39 . AB=0.111111;ABP=26.6552;AC=0;AF=0;AN=6;AO=2;CIGAR=2M1X9M;DP=90;DPB=87.5;DPRA=0;EPP=7.35324;EPPR=76.8404;GTI=0;LEN=1;MEANALT=3;MQM=60;MQMR=60;NS=3;NUMALT=3;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=81;QR=1339;RO=34;RPL=0;RPP=7.35324;RPPR=76.8404;RPR=2;RUN=1;SAF=2;SAP=7.35324;SAR=0;SRF=34;SRP=76.8404;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|0:57:20,33,4,0:20:793:33,4,0:1281,157,0:-99.2016,0,-55.3459,-92.3101,-52.3689,-156.386,-105.222,-65.2799,-157.59,-170.502 0|0:18:10,4,2,2:10:388:4,2,2:163,80,81:-10.4395,0,-30.6627,-6.86128,-25.2754,-38.1247,-6.77063,-25.1855,-32.0462,-38.0351 0|0:15:4,11,0,0:4:158:11,0,0:442,0,0:-35.6206,0,-10.0852,-36.8247,-13.3965,-49.8248,-36.8247,-13.3965,-49.8248,-49.8248 dDocent_Contig_11390 45 . G A 79.5614 . AB=0;ABP=0;AC=2;AF=0.333333;AN=6;AO=2;CIGAR=1X;DP=46;DPB=46;DPRA=0.0909091;EPP=7.35324;EPPR=98.5551;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=82;QR=1728;RO=44;RPL=0;RPP=7.35324;RPPR=98.5551;RPR=2;RUN=1;SAF=2;SAP=7.35324;SAR=0;SRF=44;SRP=98.5551;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:37:37,0:37:1450:0:0:0,-11.1381,-130.75 0/0:7:7,0:7:278:0:0:0,-2.10721,-25.3904 1/1:2:0,2:0:0:2:82:-7.77968,-0.60206,0 dDocent_Contig_11392 33 . T C 140.338 . AB=0.153846;ABP=70.66;AC=2;AF=0.333333;AN=6;AO=10;CIGAR=1X;DP=165;DPB=165;DPRA=0.325;EPP=24.725;EPPR=339.589;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=404;QR=6155;RO=155;RPL=0;RPP=24.725;RPPR=339.589;RPR=10;RUN=1;SAF=10;SAP=24.725;SAR=0;SRF=155;SRP=339.589;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:100:100,0:100:3996:0:0:0,-30.103,-359.631 0/1:19:16,3:16:636:3:121:-5.56063,0,-51.8561 0/1:46:39,7:39:1523:7:283:-11.996,0,-123.471 dDocent_Contig_11393 66 . C A 2072.92 . AB=0.674157;ABP=26.4573;AC=4;AF=0.666667;AN=6;AO=60;CIGAR=1X3M;DP=89;DPB=89;DPRA=0;EPP=133.299;EPPR=48.6112;GTI=0;LEN=1;MEANALT=1.66667;MQM=60;MQMR=60;NS=3;NUMALT=2;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=2384;QR=833;RO=21;RPL=60;RPP=133.299;RPPR=48.6112;RPR=0;RUN=1;SAF=60;SAP=133.299;SAR=0;SRF=21;SRP=48.6112;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|1:52:16,0,36:16:633:0,36:0,1448:-114.916,-119.733,-171.825,0,-52.4891,-41.652 0|1:15:5,1,9:5:200:1,9:27,339:-26.3595,-25.7465,-41.929,0,-14.476,-13.8739 1|1:22:0,7,15:0:0:7,15:268,597:-71.5395,-49.5531,-47.4459,-22.3737,0,-17.8583 dDocent_Contig_11394 10 . A T 74.8529 . AB=0;ABP=0;AC=2;AF=0.333333;AN=6;AO=2;CIGAR=1X;DP=38;DPB=38;DPRA=0.111111;EPP=7.35324;EPPR=81.1833;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=0;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=77;QR=1405;RO=36;RPL=0;RPP=7.35324;RPPR=81.1833;RPR=2;RUN=1;SAF=2;SAP=7.35324;SAR=0;SRF=36;SRP=81.1833;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:15:15,0:15:582:0:0:0,-4.51545,-52.713 1/1:2:0,2:0:0:2:77:-7.30883,-0.60206,0 0/0:21:21,0:21:823:0:0:0,-6.32163,-74.3831 dDocent_Contig_11395 139 . G A 166.817 . AB=0.583333;ABP=3.73412;AC=1;AF=0.166667;AN=6;AO=7;CIGAR=1X;DP=22;DPB=22;DPRA=2.4;EPP=18.2106;EPPR=35.5824;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=8.67362e-19;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=242;QR=517;RO=15;RPL=0;RPP=18.2106;RPPR=35.5824;RPR=7;RUN=1;SAF=0;SAP=18.2106;SAR=7;SRF=0;SRP=35.5824;SRR=15;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:8:8,0:8:280:0:0:0,-2.40824,-25.54 0/0:2:2,0:2:65:0:0:0,-0.60206,-6.17329 0/1:12:5,7:5:172:7:242:-18.5052,0,-12.2061 dDocent_Contig_11396 39 . C A 96.4855 . AB=0.333333;ABP=5.9056;AC=1;AF=0.166667;AN=6;AO=4;CIGAR=1X;DP=28;DPB=28;DPRA=1.5;EPP=11.6962;EPPR=55.1256;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=8.67362e-19;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=160;QR=971;RO=24;RPL=0;RPP=11.6962;RPPR=55.1256;RPR=4;RUN=1;SAF=4;SAP=11.6962;SAR=0;SRF=24;SRP=55.1256;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:12:8,4:8:327:4:160:-11.1711,0,-26.1877 0/0:2:2,0:2:82:0:0:0,-0.60206,-7.77968 0/0:14:14,0:14:562:0:0:0,-4.21442,-50.9218 dDocent_Contig_11398 93 . T A 140.529 . AB=0.461538;ABP=3.17734;AC=1;AF=0.166667;AN=6;AO=6;CIGAR=1X;DP=62;DPB=62;DPRA=0.530612;EPP=16.0391;EPPR=124.613;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=216;QR=1992;RO=56;RPL=6;RPP=16.0391;RPPR=124.613;RPR=0;RUN=1;SAF=6;SAP=16.0391;SAR=0;SRF=56;SRP=124.613;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:17:17,0:17:607:0:0:0,-5.11751,-54.9619 0/1:13:7,6:7:243:6:216:-15.8768,0,-18.2936 0/0:32:32,0:32:1142:0:0:0,-9.63296,-103.089 dDocent_Contig_11401 7 . C T 54.7411 . AB=0.25;ABP=9.52472;AC=1;AF=0.166667;AN=6;AO=3;CIGAR=1X;DP=92;DPB=92;DPRA=0.3;EPP=9.52472;EPPR=196.271;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=117;QR=3391;RO=89;RPL=0;RPP=9.52472;RPPR=196.271;RPR=3;RUN=1;SAF=3;SAP=9.52472;SAR=0;SRF=89;SRP=196.271;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:65:65,0:65:2477:0:0:0,-19.5669,-223.135 0/1:12:9,3:9:338:3:117:-7.29802,0,-27.1613 0/0:15:15,0:15:576:0:0:0,-4.51545,-52.1822 dDocent_Contig_11402 16 . T G 108.7 . AB=0.263158;ABP=12.2676;AC=1;AF=0.25;AN=4;AO=5;CIGAR=1X;DP=30;DPB=30;DPRA=1.72727;EPP=13.8677;EPPR=57.2971;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=2;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=199;QR=958;RO=25;RPL=0;RPP=13.8677;RPPR=57.2971;RPR=5;RUN=1;SAF=5;SAP=13.8677;SAR=0;SRF=25;SRP=57.2971;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:19:14,5:14:535:5:199:-12.569,0,-42.7716 ./.:.:.:.:.:.:.:. 0/0:11:11,0:11:423:0:0:0,-3.31133,-38.4211 dDocent_Contig_11403 32 . G C 813.339 . AB=0.174825;ABP=265.683;AC=3;AF=0.5;AN=6;AO=50;CIGAR=1X;DP=286;DPB=286;DPRA=0;EPP=111.584;EPPR=515.478;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=1.38778e-17;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=1911;QR=9173;RO=236;RPL=0;RPP=111.584;RPPR=515.478;RPR=50;RUN=1;SAF=50;SAP=111.584;SAR=0;SRF=236;SRP=515.478;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:158:137,21:137:5316:21:813:-25.9213,0,-430.766 0/1:50:31,19:31:1199:19:732:-51.145,0,-93.1411 0/1:78:68,10:68:2658:10:366:-9.79047,0,-215.884 dDocent_Contig_11404 41 . G A 70.9663 . AB=0.235294;ABP=13.3567;AC=2;AF=0.5;AN=4;AO=4;CIGAR=1X;DP=17;DPB=17;DPRA=0;EPP=11.6962;EPPR=31.2394;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=2;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=163;QR=524;RO=13;RPL=0;RPP=11.6962;RPPR=31.2394;RPR=4;RUN=1;SAF=4;SAP=11.6962;SAR=0;SRF=13;SRP=31.2394;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:9:8,1:8:319:1:40:-1.28641,0,-26.3673 ./.:.:.:.:.:.:.:. 0/1:8:5,3:5:205:3:123:-9.05655,0,-16.4268 dDocent_Contig_11405 14 . A T 397.474 . AB=0.0963855;ABP=120.453;AC=1;AF=0.166667;AN=6;AO=8;CIGAR=8M1X5M;DP=95;DPB=93.8571;DPRA=0;EPP=20.3821;EPPR=139.813;GTI=0;LEN=1;MEANALT=3.5;MQM=60;MQMR=60;NS=3;NUMALT=3;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=328;QR=2444;RO=63;RPL=0;RPP=20.3821;RPPR=139.813;RPR=8;RUN=1;SAF=8;SAP=20.3821;SAR=0;SRF=63;SRP=139.813;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|0:59:44,3,10,2:44:1712:3,10,2:111,409,82:-20.5217,-24.6937,-164.465,0,-131.613,-137.683,-26.9975,-158.599,-133.924,-167.077 0|0:12:8,0,3,0:8:307:0,3,0:0,123,0:-7.75142,-10.1597,-35.3403,0,-25.182,-24.2789,-10.1597,-35.3403,-25.182,-35.3403 0|1:24:11,1,5,6:11:425:1,5,6:37,204,246:-16.9971,-17.2843,-51.8776,-3.47538,-35.3444,-36.865,0,-31.8699,-18.0582,-33.0894 dDocent_Contig_11407 14 . C T 263.047 . AB=0.26087;ABP=25.858;AC=2;AF=0.333333;AN=6;AO=12;CIGAR=1X;DP=59;DPB=59;DPRA=1.76923;EPP=29.068;EPPR=105.07;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=477;QR=1876;RO=47;RPL=0;RPP=29.068;RPPR=105.07;RPR=12;RUN=1;SAF=12;SAP=29.068;SAR=0;SRF=47;SRP=105.07;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:21:12,9:12:475:9:362:-26.62,0,-36.7708 0/1:25:22,3:22:876:3:115:-3.19846,0,-71.6229 0/0:13:13,0:13:525:0:0:0,-3.91339,-47.5967 dDocent_Contig_11408 111 . A C 965.432 . AB=0;ABP=0;AC=2;AF=0.333333;AN=6;AO=36;CIGAR=1X2M1X;DP=63;DPB=63;DPRA=4.75;EPP=81.1833;EPPR=44.2683;GTI=0;LEN=1;MEANALT=2.5;MQM=42.9167;MQMR=58.2105;NS=3;NUMALT=2;ODDS=0;PAIRED=0;PAIREDR=0.947368;PAO=0;PQA=0;PQR=0;PRO=0;QA=1113;QR=631;RO=19;RPL=0;RPP=81.1833;RPPR=44.2683;RPR=36;RUN=1;SAF=0;SAP=81.1833;SAR=36;SRF=0;SRP=44.2683;SRR=19;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 1|1:40:0,35,4:0:0:35,4:1081,101:-96.066,-10.5361,0,-88.7433,-3.2091,-87.5392 0|0:6:6,0,0:6:205:0,0:0,0:0,-1.80618,-18.7853,-1.80618,-18.7853,-18.7853 0|0:17:13,1,3:13:426:1,3:32,42:0,-1.30668,-34.7354,-1.98062,-32.988,-34.6398 dDocent_Contig_11409 40 . T C 1936.11 . AB=0.342593;ABP=49.4959;AC=3;AF=0.5;AN=6;AO=74;CIGAR=1X;DP=216;DPB=216;DPRA=0;EPP=163.699;EPPR=311.359;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=2925;QR=5413;RO=142;RPL=0;RPP=163.699;RPPR=311.359;RPR=74;RUN=1;SAF=74;SAP=163.699;SAR=0;SRF=142;SRP=311.359;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:130:73,57:73:2770:57:2238:-162.46,0,-210.322 0/1:23:19,4:19:721:4:161:-7.95179,0,-58.285 0/1:63:50,13:50:1922:13:526:-28.7221,0,-154.23 dDocent_Contig_11410 155 . C T 62.3788 . AB=0.272727;ABP=7.94546;AC=1;AF=0.166667;AN=6;AO=4;CIGAR=1X;DP=22;DPB=22;DPRA=3.16667;EPP=11.6962;EPPR=42.0968;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=141;QR=715;RO=18;RPL=0;RPP=11.6962;RPPR=42.0968;RPR=4;RUN=1;SAF=0;SAP=11.6962;SAR=4;SRF=0;SRP=42.0968;SRR=18;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:8:7,1:7:284:1:19:0,-0.508274,-24.034 0/0:3:3,0:3:108:0:0:0,-0.90309,-10.0725 0/1:11:8,3:8:323:3:122:-8.06116,0,-26.1273 dDocent_Contig_11411 7 . C A 224.52 . AB=0.261905;ABP=23.691;AC=3;AF=0.5;AN=6;AO=11;CIGAR=1X1M1I3M1X1M3D1X1M2X1M;DP=42;DPB=39.9333;DPRA=0;EPP=26.8965;EPPR=52.9542;GTI=0;LEN=1;MEANALT=2;MQM=44.1818;MQMR=60;NS=3;NUMALT=3;ODDS=6.93889e-18;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=428;QR=907;RO=23;RPL=0;RPP=26.8965;RPPR=52.9542;RPR=11;RUN=1;SAF=11;SAP=26.8965;SAR=0;SRF=23;SRP=52.9542;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|1:21:10,4,0,6:10:396:4,0,6:158,0,235:-15.7728,-5.93385,-37.3302,-18.7831,-38.5344,-51.3812,0,-19.7505,-32.596,-30.7898 0|1:9:8,0,0,1:8:314:0,0,1:0,0,38:-1.088,-3.49624,-29.3327,-3.49624,-29.3327,-29.3327,0,-26.2176,-26.2176,-25.9165 0|1:12:5,0,3,4:5:197:0,3,4:0,116,155:-10.1837,-11.6888,-27.9061,-2.14865,-18.3758,-17.4727,0,-16.2122,-6.68664,-15.0081 dDocent_Contig_11412 7 . C T 120.117 . AB=0.225806;ABP=23.254;AC=2;AF=0.333333;AN=6;AO=7;CIGAR=1X;DP=35;DPB=35;DPRA=3.875;EPP=18.2106;EPPR=63.8115;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=0.857143;PAIREDR=0.857143;PAO=0;PQA=0;PQR=0;PRO=0;QA=268;QR=1057;RO=28;RPL=0;RPP=18.2106;RPPR=63.8115;RPR=7;RUN=1;SAF=7;SAP=18.2106;SAR=0;SRF=28;SRP=63.8115;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:21:18,3:18:674:3:114:-4.31059,0,-54.6641 0/0:4:4,0:4:149:0:0:0,-1.20412,-13.7733 0/1:10:6,4:6:234:4:154:-11.2232,0,-18.4208 dDocent_Contig_11413 48 . G A 267.298 . AB=0.642857;ABP=5.49198;AC=1;AF=0.25;AN=4;AO=9;CIGAR=1X;DP=21;DPB=21;DPRA=2;EPP=22.5536;EPPR=29.068;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=2;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=362;QR=486;RO=12;RPL=0;RPP=22.5536;RPPR=29.068;RPR=9;RUN=1;SAF=9;SAP=22.5536;SAR=0;SRF=12;SRP=29.068;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:7:7,0:7:284:0:0:0,-2.10721,-25.9338 ./.:.:.:.:.:.:.:. 0/1:14:5,9:5:202:9:362:-28.7298,0,-14.3477 dDocent_Contig_11414 14 . A T 68.4478 . AB=0.121212;ABP=85.263;AC=2;AF=0.333333;AN=6;AO=8;CIGAR=1X;DP=68;DPB=68;DPRA=16.5;EPP=20.3821;EPPR=133.299;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=0;PAIREDR=0.916667;PAO=0;PQA=0;PQR=0;PRO=0;QA=327;QR=2406;RO=60;RPL=0;RPP=20.3821;RPPR=133.299;RPR=8;RUN=1;SAF=8;SAP=20.3821;SAR=0;SRF=60;SRP=133.299;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:41:37,4:37:1480:4:163:-2.7162,0,-121.102 0/0:2:2,0:2:79:0:0:0,-0.60206,-7.49724 0/1:25:21,4:21:847:4:164:-7.62415,0,-69.0137 dDocent_Contig_11415 107 . N T 430.73 . AB=0;ABP=0;AC=4;AF=1;AN=4;AO=12;CIGAR=1X;DP=12;DPB=12;DPRA=0;EPP=29.068;EPPR=0;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=0;NS=2;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=467;QR=0;RO=0;RPL=0;RPP=29.068;RPPR=0;RPR=12;RUN=1;SAF=0;SAP=29.068;SAR=12;SRF=0;SRP=0;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 1/1:9:0,9:0:0:9:350:-31.8614,-2.70927,0 ./.:.:.:.:.:.:.:. 1/1:3:0,3:0:0:3:117:-10.9104,-0.90309,0 dDocent_Contig_11416 25 . G A 886.869 . AB=0.577778;ABP=5.37479;AC=4;AF=0.666667;AN=6;AO=30;CIGAR=1M7I1X2M1X;DP=49;DPB=91;DPRA=0;EPP=68.1545;EPPR=42.0968;GTI=0;LEN=1;MEANALT=1.33333;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=1164;QR=710;RO=18;RPL=0;RPP=68.1545;RPPR=42.0968;RPR=30;RUN=1;SAF=30;SAP=68.1545;SAR=0;SRF=18;SRP=42.0968;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|1:28:12,15:12:473:15:580:-44.0345,0,-34.4097 1|1:4:0,4:0:0:4:156:-14.4173,-1.20412,0 0|1:17:6,11:6:237:11:428:-33.7579,0,-16.5858 dDocent_Contig_11417 27 . C T 118.097 . AB=0.169811;ABP=53.2;AC=3;AF=0.5;AN=6;AO=9;CIGAR=1X;DP=53;DPB=53;DPRA=0;EPP=22.5536;EPPR=98.5551;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=3.46945e-18;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=357;QR=1732;RO=44;RPL=0;RPP=22.5536;RPPR=98.5551;RPR=9;RUN=1;SAF=9;SAP=22.5536;SAR=0;SRF=44;SRP=98.5551;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:29:25,4:25:982:4:159:-5.96208,0,-79.9489 0/1:9:7,2:7:285:2:81:-4.97646,0,-23.3149 0/1:15:12,3:12:465:3:117:-6.39384,0,-37.6793 dDocent_Contig_11418 31 . G A 772.887 . 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G A 133.771 . AB=0.4375;ABP=3.55317;AC=2;AF=0.333333;AN=6;AO=7;CIGAR=1X;DP=27;DPB=27;DPRA=0.727273;EPP=18.2106;EPPR=46.4397;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=234;QR=674;RO=20;RPL=7;RPP=18.2106;RPPR=46.4397;RPR=0;RUN=1;SAF=7;SAP=18.2106;SAR=0;SRF=20;SRP=46.4397;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:11:11,0:11:372:0:0:0,-3.31133,-33.8069 0/1:5:3,2:3:101:2:65:-4.66814,0,-7.91845 0/1:11:6,5:6:201:5:169:-12.2315,0,-15.1076 dDocent_Contig_11422 53 . T A 3116.67 . AB=0.52451;ABP=4.07475;AC=3;AF=0.5;AN=6;AO=107;CIGAR=1X;DP=204;DPB=204;DPRA=0;EPP=235.358;EPPR=213.643;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=1.38778e-17;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=4198;QR=3754;RO=97;RPL=107;RPP=235.358;RPPR=213.643;RPR=0;RUN=1;SAF=107;SAP=235.358;SAR=0;SRF=97;SRP=213.643;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:149:65,84:65:2496:84:3282:-250.603,0,-179.934 0/1:9:5,4:5:197:4:162:-12.2575,0,-15.3964 0/1:46:27,19:27:1061:19:754:-54.3301,0,-81.9293 dDocent_Contig_11423 32 . C T 41.7285 . AB=0.214286;ABP=12.937;AC=2;AF=0.333333;AN=6;AO=3;CIGAR=1X;DP=21;DPB=21;DPRA=1;EPP=9.52472;EPPR=42.0968;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=123;QR=728;RO=18;RPL=0;RPP=9.52472;RPPR=42.0968;RPR=3;RUN=1;SAF=3;SAP=9.52472;SAR=0;SRF=18;SRP=42.0968;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:7:7,0:7:282:0:0:0,-2.10721,-25.7526 0/1:5:4,1:4:162:1:41:-2.58942,0,-13.4618 0/1:9:7,2:7:284:2:82:-5.07041,0,-23.2247 dDocent_Contig_11424 17 . G A 2706.62 . AB=0.752294;ABP=63.2736;AC=4;AF=0.666667;AN=6;AO=82;CIGAR=3M1X4M;DP=109;DPB=110.25;DPRA=0;EPP=181.071;EPPR=48.6112;GTI=0;LEN=1;MEANALT=2;MQM=60;MQMR=60;NS=3;NUMALT=2;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=3273;QR=823;RO=21;RPL=0;RPP=181.071;RPPR=48.6112;RPR=82;RUN=1;SAF=82;SAP=181.071;SAR=0;SRF=21;SRP=48.6112;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|1:68:15,0,52:15:592:0,52:0,2085:-167.549,-172.065,-220.773,0,-48.975,-33.3214 1|1:9:0,4,5:0:0:4,5:150,201:-29.238,-16.9654,-15.7612,-12.6592,0,-11.1541 0|1:32:6,1,25:6:231:1,25:39,987:-79.3979,-77.9983,-96.66,0,-15.7537,-11.4345 dDocent_Contig_11426 22 . T C 8842.24 . AB=0.834437;ABP=296.404;AC=4;AF=0.666667;AN=6;AO=273;CIGAR=1X;DP=323;DPB=323;DPRA=0;EPP=595.822;EPPR=109.412;GTI=0;LEN=1;MEANALT=1.33333;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=1.38778e-17;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=10871;QR=1947;RO=49;RPL=0;RPP=595.822;RPPR=109.412;RPR=273;RUN=1;SAF=273;SAP=595.822;SAR=0;SRF=49;SRP=109.412;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:213:40,172:40:1588:172:6803:-548.055,0,-79.2406 1/1:21:0,21:0:0:21:839:-75.8223,-6.32163,0 0/1:89:9,80:9:359:80:3229:-263.869,0,-5.87967 dDocent_Contig_11427 40 . T A 277.394 . AB=0.236364;ABP=36.2141;AC=2;AF=0.333333;AN=6;AO=13;CIGAR=1X;DP=96;DPB=96;DPRA=0.670732;EPP=31.2394;EPPR=183.243;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=523;QR=3289;RO=83;RPL=0;RPP=31.2394;RPPR=183.243;RPR=13;RUN=1;SAF=13;SAP=31.2394;SAR=0;SRF=83;SRP=183.243;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:28:19,9:19:754:9:362:-24.5151,0,-59.7493 0/1:27:23,4:23:906:4:161:-6.74709,0,-73.7171 0/0:41:41,0:41:1629:0:0:0,-12.3422,-146.841 dDocent_Contig_11428 16 . G T 359.138 . AB=0.208333;ABP=73.9451;AC=2;AF=0.333333;AN=6;AO=20;CIGAR=1M1I2M1X;DP=127;DPB=132;DPRA=1.54839;EPP=46.4397;EPPR=233.186;GTI=0;LEN=1;MEANALT=1.5;MQM=48;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=762;QR=4222;RO=106;RPL=0;RPP=46.4397;RPPR=233.186;RPR=20;RUN=1;SAF=20;SAP=46.4397;SAR=0;SRF=106;SRP=233.186;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|1:89:71,17:71:2809:17:650:-31.2156,0,-226.033 0|1:7:4,3:4:160:3:112:-8.22115,0,-12.6768 0|0:31:31,0:31:1253:0:0:0,-9.33193,-113.039 dDocent_Contig_11430 20 . T A 711.718 . AB=0.448276;ABP=4.35811;AC=3;AF=0.5;AN=6;AO=26;CIGAR=1X;DP=58;DPB=58;DPRA=0;EPP=59.4686;EPPR=72.4974;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=0.9375;PAO=0;PQA=0;PQR=0;PRO=0;QA=1034;QR=1283;RO=32;RPL=0;RPP=59.4686;RPPR=72.4974;RPR=26;RUN=1;SAF=26;SAP=59.4686;SAR=0;SRF=32;SRP=72.4974;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:22:8,14:8:321:14:555:-43.6693,0,-22.6341 0/1:18:9,9:9:361:9:358:-27.1639,0,-27.4353 0/1:18:15,3:15:601:3:121:-5.86145,0,-49.011 dDocent_Contig_11431 67 . G A 1378.78 . AB=0.563218;ABP=6.03039;AC=3;AF=0.5;AN=6;AO=49;CIGAR=1X;DP=87;DPB=87;DPRA=0;EPP=109.412;EPPR=85.5263;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=1873;QR=1409;RO=38;RPL=49;RPP=109.412;RPPR=85.5263;RPR=0;RUN=1;SAF=49;SAP=109.412;SAR=0;SRF=38;SRP=85.5263;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:36:16,20:16:617:20:759:-57.7967,0,-45.0327 0/1:7:3,4:3:118:4:160:-12.6762,0,-8.89551 0/1:44:19,25:19:674:25:954:-72.9277,0,-47.7302 dDocent_Contig_11432 9 . G A 599.263 . AB=0.125;ABP=42.0968;AC=0;AF=0;AN=6;AO=4;CIGAR=1X3M1X2M;DP=50;DPB=50;DPRA=0;EPP=11.6962;EPPR=37.7539;GTI=0;LEN=1;MEANALT=3;MQM=60;MQMR=60;NS=3;NUMALT=4;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=157;QR=627;RO=16;RPL=0;RPP=11.6962;RPPR=37.7539;RPR=4;RUN=1;SAF=4;SAP=11.6962;SAR=0;SRF=16;SRP=37.7539;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|0:24:7,3,0,8,6:7:277:3,0,8,6:118,0,325,239:-24.7029,-17.1051,-38.9976,-26.8101,-39.9007,-49.6065,0,-13.0915,-22.7976,-20.3893,-7.13131,-20.2212,-29.9266,-3.11597,-28.1204 0|0:8:3,1,0,3,1:3:114:1,0,3,1:39,0,120,41:-8.98158,-6.68126,-15.7197,-9.88467,-16.0207,-19.2262,0,-6.13072,-9.3371,-8.43401,-6.49811,-12.6338,-15.8397,-5.94757,-15.5386 0|0:18:6,0,2,10,0:6:236:0,2,10,0:0,82,407,0:-31.7646,-33.5708,-52.9796,-26.8021,-46.2105,-45.6085,0,-19.4011,-12.6289,-16.3908,-33.5708,-52.9796,-46.2105,-19.4011,-52.9796 dDocent_Contig_11433 7 . C T 111.389 . AB=0.15;ABP=66.8516;AC=1;AF=0.166667;AN=6;AO=13;CIGAR=1X2M1X;DP=146;DPB=146;DPRA=2.54167;EPP=31.2394;EPPR=280.959;GTI=0;LEN=1;MEANALT=3;MQM=49.2308;MQMR=59.3047;NS=3;NUMALT=1;ODDS=6.93889e-18;PAIRED=0;PAIREDR=0.75;PAO=0;PQA=0;PQR=0;PRO=0;QA=500;QR=4864;RO=128;RPL=0;RPP=31.2394;RPPR=280.959;RPR=13;RUN=1;SAF=13;SAP=31.2394;SAR=0;SRF=128;SRP=280.959;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|0:62:54,4:54:2061:4:154:0,-3.70982,-171.544 0|0:24:24,0:24:891:0:0:0,-7.22472,-79.9409 0|1:60:50,9:50:1912:9:346:-12.9628,0,-154.168 dDocent_Contig_11434 31 . G T 733.077 . AB=0.242424;ABP=79.0776;AC=1;AF=0.166667;AN=6;AO=39;CIGAR=1X;DP=246;DPB=246;DPRA=0;EPP=87.6977;EPPR=452.505;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=1550;QR=8183;RO=207;RPL=0;RPP=87.6977;RPPR=452.505;RPR=39;RUN=1;SAF=39;SAP=87.6977;SAR=0;SRF=207;SRP=452.505;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:132:100,32:100:3948:32:1270:-74.8306,0,-315.57 0/0:44:41,3:41:1602:3:119:0,-2.15031,-133.333 0/0:70:66,4:66:2633:4:161:0,-6.19661,-222.224 dDocent_Contig_11436 42 . T G 221.687 . AB=0.470588;ABP=3.13803;AC=1;AF=0.25;AN=4;AO=8;CIGAR=1X;DP=24;DPB=24;DPRA=2.42857;EPP=20.3821;EPPR=37.7539;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=2;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=318;QR=618;RO=16;RPL=0;RPP=20.3821;RPPR=37.7539;RPR=8;RUN=1;SAF=8;SAP=20.3821;SAR=0;SRF=16;SRP=37.7539;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:17:9,8:9:364:8:318:-23.8677,0,-28.0069 ./.:.:.:.:.:.:.:. 0/0:7:7,0:7:254:0:0:0,-2.10721,-23.2005 dDocent_Contig_11437 29 . T A 381.161 . AB=0.375;ABP=8.43898;AC=3;AF=0.5;AN=6;AO=15;CIGAR=1X;DP=40;DPB=40;DPRA=0;EPP=35.5824;EPPR=57.2971;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=0.96;PAO=0;PQA=0;PQR=0;PRO=0;QA=606;QR=1001;RO=25;RPL=0;RPP=35.5824;RPPR=57.2971;RPR=15;RUN=1;SAF=15;SAP=35.5824;SAR=0;SRF=25;SRP=57.2971;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:25:16,9:16:646:9:366:-25.7794,0,-50.9482 0/1:6:3,3:3:119:3:121:-9.47381,0,-9.28883 0/1:9:6,3:6:236:3:119:-8.38574,0,-18.9021 dDocent_Contig_11438 15 . G A 1011.46 . AB=0.382353;ABP=11.1853;AC=3;AF=0.5;AN=6;AO=26;CIGAR=1X3M2X1M2D2M;DP=68;DPB=46.7273;DPRA=0;EPP=59.4686;EPPR=39.9253;GTI=0;LEN=1;MEANALT=2.66667;MQM=60;MQMR=60;NS=3;NUMALT=3;ODDS=1.38778e-17;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=977;QR=659;RO=17;RPL=0;RPP=59.4686;RPPR=39.9253;RPR=26;RUN=1;SAF=26;SAP=59.4686;SAR=0;SRF=17;SRP=39.9253;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 1|0:34:7,0,13,14:7:273:0,13,14:0,490,509:-57.155,-59.2622,-81.7066,-19.0991,-41.5482,-37.6348,-17.7034,-40.1482,0,-35.9338 1|0:16:0,3,8,4:0:0:3,8,4:114,303,154:-37.4843,-28.1352,-27.2321,-12.6448,-3.29822,-10.2365,-24.8385,-15.4892,0,-23.6343 0|1:18:10,0,5,3:10:386:0,5,3:0,184,113:-12.0295,-15.0398,-46.7477,0,-31.7069,-30.2017,-5.77653,-37.4882,-22.449,-36.5851 dDocent_Contig_11440 22 . T C 187.836 . AB=0.307692;ABP=11.3621;AC=2;AF=0.333333;AN=6;AO=8;CIGAR=1X;DP=34;DPB=34;DPRA=1.625;EPP=20.3821;EPPR=59.4686;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=0.875;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=326;QR=1017;RO=26;RPL=0;RPP=20.3821;RPPR=59.4686;RPR=8;RUN=1;SAF=8;SAP=20.3821;SAR=0;SRF=26;SRP=59.4686;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:22:15,7:15:592:7:286:-19.4922,0,-46.9984 0/1:4:3,1:3:109:1:40:-2.79156,0,-8.96397 0/0:8:8,0:8:316:0:0:0,-2.40824,-28.8063 dDocent_Contig_11442 28 . C A 62.8754 . AB=0.118644;ABP=77.5396;AC=1;AF=0.166667;AN=6;AO=7;CIGAR=1X;DP=153;DPB=153;DPRA=1.25532;EPP=18.2106;EPPR=278.103;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=59.5;NS=3;NUMALT=1;ODDS=0;PAIRED=0;PAIREDR=0.431507;PAO=0;PQA=0;PQR=0;PRO=0;QA=280;QR=5782;RO=146;RPL=0;RPP=18.2106;RPPR=320.045;RPR=7;RUN=1;SAF=7;SAP=18.2106;SAR=0;SRF=141;SRP=278.103;SRR=5;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:59:52,7:52:2063:7:280:-7.81042,0,-168.094 0/0:53:53,0:53:2070:0:0:0,-15.9546,-186.432 0/0:41:41,0:41:1649:0:0:0,-12.3422,-148.023 dDocent_Contig_11443 10 . T C 36.6078 . AB=0.285714;ABP=5.80219;AC=1;AF=0.166667;AN=6;AO=2;CIGAR=1X1M1X;DP=26;DPB=26;DPRA=0.736842;EPP=7.35324;EPPR=55.1256;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=80;QR=928;RO=24;RPL=0;RPP=7.35324;RPPR=55.1256;RPR=2;RUN=1;SAF=2;SAP=7.35324;SAR=0;SRF=24;SRP=55.1256;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|0:7:7,0:7:273:0:0:0,-2.10721,-24.9349 0|1:7:5,2:5:194:2:80:-5.48458,0,-15.7247 0|0:12:12,0:12:461:0:0:0,-3.61236,-41.8356 dDocent_Contig_11445 154 . A G 1097.52 . AB=0.37931;ABP=6.67934;AC=4;AF=0.666667;AN=6;AO=38;CIGAR=4M1X;DP=61;DPB=61.8;DPRA=0;EPP=85.5263;EPPR=42.0968;GTI=0;LEN=1;MEANALT=2;MQM=60;MQMR=60;NS=3;NUMALT=2;ODDS=0;PAIRED=0;PAIREDR=0.944444;PAO=0;PQA=0;PQR=0;PRO=0;QA=1386;QR=684;RO=18;RPL=0;RPP=85.5263;RPPR=42.0968;RPR=38;RUN=1;SAF=0;SAP=85.5263;SAR=38;SRF=0;SRP=42.0968;SRR=18;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|1:17:9,1,7:9:343:1,7:35,239:-16.7186,-17.0755,-44.934,0,-25.8645,-26.1068 1|1:32:1,3,27:1:38:3,27:101,1004:-86.9505,-80.3,-82.514,-4.98553,-1.14757,0 0|1:12:8,0,4:8:303:0,4:0,143:-9.60545,-12.0137,-36.8694,0,-25.22,-24.0159 dDocent_Contig_11446 90 . G A 1911.29 . AB=0.684685;ABP=35.8954;AC=3;AF=0.5;AN=6;AO=76;CIGAR=1X;DP=111;DPB=111;DPRA=0;EPP=168.042;EPPR=79.0118;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=2546;QR=1213;RO=35;RPL=76;RPP=168.042;RPPR=79.0118;RPR=0;RUN=1;SAF=76;SAP=168.042;SAR=0;SRF=35;SRP=79.0118;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:72:23,49:23:799:49:1635:-125.756,0,-50.5561 0/1:12:3,9:3:103:9:302:-23.8943,0,-5.99761 0/1:27:9,18:9:311:18:609:-47.0017,0,-20.1974 dDocent_Contig_11447 13 . T C 76.5871 . AB=0.208333;ABP=20.744;AC=2;AF=0.333333;AN=6;AO=6;CIGAR=1X;DP=40;DPB=40;DPRA=0;EPP=16.0391;EPPR=76.8404;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=234;QR=1310;RO=34;RPL=0;RPP=16.0391;RPPR=76.8404;RPR=6;RUN=1;SAF=6;SAP=16.0391;SAR=0;SRF=34;SRP=76.8404;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:16:15,1:15:570:1:38:0,-1.01921,-47.8358 0/1:8:6,2:6:232:2:78:-4.99506,0,-18.8386 0/1:16:13,3:13:508:3:118:-6.18624,0,-41.2515 dDocent_Contig_11448 157 . G A 99.083 . AB=0.444444;ABP=3.25157;AC=1;AF=0.166667;AN=6;AO=4;CIGAR=1X;DP=20;DPB=20;DPRA=1.63636;EPP=11.6962;EPPR=37.7539;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=153;QR=617;RO=16;RPL=0;RPP=11.6962;RPPR=37.7539;RPR=4;RUN=1;SAF=0;SAP=11.6962;SAR=4;SRF=0;SRP=37.7539;SRR=16;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:9:5,4:5:196:4:153:-11.4304,0,-15.3061 0/0:1:1,0:1:39:0:0:0,-0.30103,-3.89656 0/0:10:10,0:10:382:0:0:0,-3.0103,-34.7316 dDocent_Contig_11450 15 . C A 531.558 . AB=0.305556;ABP=26.6552;AC=3;AF=0.5;AN=6;AO=22;CIGAR=1X;DP=72;DPB=72;DPRA=0;EPP=50.7827;EPPR=111.584;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=867;QR=1982;RO=50;RPL=0;RPP=50.7827;RPPR=111.584;RPR=22;RUN=1;SAF=22;SAP=50.7827;SAR=0;SRF=50;SRP=111.584;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:43:37,6:37:1471:6:228:-7.93805,0,-119.696 0/1:11:1,10:1:41:10:398:-32.8671,0,-0.783237 0/1:18:12,6:12:470:6:241:-16.6481,0,-37.2307 dDocent_Contig_11451 28 . G A 209.136 . AB=0.310345;ABP=12.0706;AC=2;AF=0.333333;AN=6;AO=9;CIGAR=1X;DP=39;DPB=39;DPRA=1.45;EPP=22.5536;EPPR=68.1545;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=360;QR=1193;RO=30;RPL=0;RPP=22.5536;RPPR=68.1545;RPR=9;RUN=1;SAF=9;SAP=22.5536;SAR=0;SRF=30;SRP=68.1545;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:19:16,3:16:635:3:122:-5.65292,0,-51.7602 0/0:10:10,0:10:397:0:0:0,-3.0103,-36.0876 0/1:10:4,6:4:161:6:238:-18.7835,0,-11.865 dDocent_Contig_11452 21 . C T 402.584 . AB=0.333333;ABP=13.8677;AC=1;AF=0.166667;AN=6;AO=16;CIGAR=1X;DP=70;DPB=70;DPRA=3;EPP=37.7539;EPPR=120.27;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=3.46945e-18;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=647;QR=2177;RO=54;RPL=0;RPP=37.7539;RPPR=120.27;RPR=16;RUN=1;SAF=16;SAP=37.7539;SAR=0;SRF=54;SRP=120.27;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:45:30,15:30:1216:15:611:-41.7811,0,-96.1643 0/0:10:10,0:10:399:0:0:0,-3.0103,-36.269 0/0:15:14,1:14:562:1:36:0,-0.917175,-47.3223 dDocent_Contig_11453 22 . C T 195.716 . AB=0.333333;ABP=9.52472;AC=2;AF=0.333333;AN=6;AO=9;CIGAR=1X;DP=31;DPB=31;DPRA=3.375;EPP=22.5536;EPPR=50.7827;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=0.222222;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=339;QR=867;RO=22;RPL=0;RPP=22.5536;RPPR=50.7827;RPR=9;RUN=1;SAF=9;SAP=22.5536;SAR=0;SRF=22;SRP=50.7827;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:18:13,5:13:512:5:202:-13.1433,0,-41.0074 0/0:4:4,0:4:156:0:0:0,-1.20412,-14.4168 0/1:9:5,4:5:199:4:137:-9.95101,0,-15.5795 dDocent_Contig_11454 20 . T A 829.185 . AB=0.444444;ABP=4.45795;AC=4;AF=0.666666;AN=6;AO=24;CIGAR=1X3M;DP=54;DPB=54;DPRA=0;EPP=55.1256;EPPR=33.4109;GTI=0;LEN=1;MEANALT=2.66667;MQM=60;MQMR=60;NS=3;NUMALT=2;ODDS=0;PAIRED=0.875;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=956;QR=554;RO=14;RPL=0;RPP=55.1256;RPPR=33.4109;RPR=24;RUN=1;SAF=24;SAP=55.1256;SAR=0;SRF=14;SRP=33.4109;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|1:22:7,8,7:7:279:8,7:323,273:-24.5275,0,-20.5713,-4.20243,-0.545147,-25.0681 1|1:10:0,3,6:0:0:3,6:117,239:-29.3533,-19.7358,-18.8327,-9.66014,0,-7.85396 0|1:22:7,3,11:7:275:3,11:120,444:-34.5212,-28.0243,-49.7342,0,-14.0307,-19.3222 dDocent_Contig_11455 173 . C T 275.107 . AB=0.342857;ABP=10.5174;AC=3;AF=0.5;AN=6;AO=12;CIGAR=1X;DP=35;DPB=35;DPRA=0;EPP=29.068;EPPR=52.9542;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=471;QR=889;RO=23;RPL=12;RPP=29.068;RPPR=52.9542;RPR=0;RUN=1;SAF=0;SAP=29.068;SAR=12;SRF=0;SRP=52.9542;SRR=23;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:20:14,6:14:536:6:232:-15.2262,0,-42.5562 0/1:2:1,1:1:33:1:41:-3.49251,0,-2.69707 0/1:13:8,5:8:320:5:198:-14.2824,0,-25.2519 dDocent_Contig_11456 27 . A G 124.107 . AB=0.148148;ABP=90.1105;AC=3;AF=0.5;AN=6;AO=12;CIGAR=1X;DP=81;DPB=81;DPRA=0;EPP=29.068;EPPR=152.842;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=455;QR=2665;RO=69;RPL=0;RPP=29.068;RPPR=152.842;RPR=12;RUN=1;SAF=12;SAP=29.068;SAR=0;SRF=69;SRP=152.842;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:43:38,5:38:1471:5:200:-5.43525,0,-119.701 0/1:14:12,2:12:453:2:63:-1.76721,0,-36.8924 0/1:24:19,5:19:741:5:192:-10.4209,0,-59.7884 dDocent_Contig_11457 21 . T C 123.908 . AB=0.118421;ABP=99.1265;AC=1;AF=0.166667;AN=6;AO=14;CIGAR=2X;DP=187;DPB=187;DPRA=0;EPP=33.4109;EPPR=365.646;GTI=0;LEN=1;MEANALT=1.5;MQM=60;MQMR=60;NS=3;NUMALT=2;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=567;QR=6569;RO=167;RPL=0;RPP=33.4109;RPPR=365.646;RPR=14;RUN=1;SAF=14;SAP=33.4109;SAR=0;SRF=167;SRP=365.646;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|0:91:86,5,0:86:3385:5,0:202,0:0,-8.83186,-286.162,-25.8886,-287.667,-304.321 0|0:20:17,0,3:17:666:0,3:0,119:-5.07458,-10.1921,-64.952,0,-55.1555,-54.2524 0|1:76:64,9,3:64:2518:9,3:365,120:-10.8389,0,-204.413,-20.221,-197.237,-226.436 dDocent_Contig_11458 169 . T A 52.8707 . AB=0.181818;ABP=22.3561;AC=2;AF=0.333333;AN=6;AO=5;CIGAR=1X;DP=38;DPB=38;DPRA=0;EPP=13.8677;EPPR=74.6689;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=195;QR=1295;RO=33;RPL=5;RPP=13.8677;RPPR=74.6689;RPR=0;RUN=1;SAF=0;SAP=13.8677;SAR=5;SRF=0;SRP=74.6689;SRR=33;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:16:15,1:15:604:1:38:0,-1.01921,-50.9022 0/1:13:10,3:10:383:3:118:-7.08912,0,-30.9057 0/1:9:8,1:8:308:1:39:-1.18729,0,-25.3711 dDocent_Contig_11459 32 . A C 46.633 . AB=0.147059;ABP=39.7976;AC=2;AF=0.333333;AN=6;AO=5;CIGAR=1X;DP=36;DPB=36;DPRA=8.5;EPP=13.8677;EPPR=68.1545;GTI=0;LEN=1;MEANALT=1.5;MQM=45;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=0;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=204;QR=1210;RO=30;RPL=0;RPP=13.8677;RPPR=68.1545;RPR=5;RUN=1;SAF=5;SAP=13.8677;SAR=0;SRF=30;SRP=68.1545;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:21:18,3:18:723:3:123:-4.75088,0,-59.0709 0/0:2:2,0:2:77:0:0:0,-0.60206,-7.3082 0/1:13:10,2:10:410:2:81:-3.42933,0,-33.2413 dDocent_Contig_11460 117 . C T 126.282 . AB=0.333333;ABP=8.07707;AC=2;AF=0.5;AN=4;AO=7;CIGAR=1X;DP=21;DPB=21;DPRA=0;EPP=18.2106;EPPR=33.4109;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=2;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=244;QR=467;RO=14;RPL=0;RPP=18.2106;RPPR=33.4109;RPR=7;RUN=1;SAF=0;SAP=18.2106;SAR=7;SRF=0;SRP=33.4109;SRR=14;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:12:9,3:9:304:3:105:-6.18373,0,-24.0767 ./.:.:.:.:.:.:.:. 0/1:9:5,4:5:163:4:139:-10.1434,0,-12.2826 dDocent_Contig_11461 29 . C T 416.783 . AB=0.301587;ABP=24.5527;AC=3;AF=0.5;AN=6;AO=19;CIGAR=1M2I3X;DP=63;DPB=72.5;DPRA=0;EPP=44.2683;EPPR=96.3836;GTI=0;LEN=1;MEANALT=1.33333;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=724;QR=1650;RO=43;RPL=0;RPP=44.2683;RPPR=96.3836;RPR=19;RUN=1;SAF=19;SAP=44.2683;SAR=0;SRF=43;SRP=96.3836;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|1:19:15,3:15:562:3:116:-5.0026,0,-45.1009 0|1:33:22,11:22:852:11:411:-27.4034,0,-67.0637 0|1:11:6,5:6:236:5:197:-14.795,0,-18.3013 dDocent_Contig_11462 9 . G A 2876.44 . AB=0.105263;ABP=234.444;AC=0;AF=0;AN=6;AO=18;CIGAR=2X;DP=171;DPB=171;DPRA=0;EPP=42.0968;EPPR=126.784;GTI=0;LEN=1;MEANALT=2;MQM=60;MQMR=60;NS=3;NUMALT=2;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=701;QR=2163;RO=57;RPL=0;RPP=42.0968;RPPR=126.784;RPR=18;RUN=1;SAF=18;SAP=42.0968;SAR=0;SRF=57;SRP=126.784;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|0:73:24,6,43:24:909:6,43:235,1681:-130.95,-118.851,-191.56,0,-55.1837,-61.5656 0|0:29:7,2,20:7:259:2,20:73,803:-64.0918,-60.239,-80.8152,0,-15.2281,-15.1696 0|0:69:26,10,33:26:995:10,33:393,1289:-98.125,-73.6255,-152.264,0,-49.3167,-71.7113 dDocent_Contig_11465 74 . T G 780.068 . AB=0.378947;ABP=15.102;AC=3;AF=0.5;AN=6;AO=36;CIGAR=1X;DP=95;DPB=95;DPRA=0;EPP=81.1833;EPPR=131.127;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=1235;QR=2059;RO=59;RPL=36;RPP=81.1833;RPPR=131.127;RPR=0;RUN=1;SAF=36;SAP=81.1833;SAR=0;SRF=59;SRP=131.127;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:59:37,22:37:1304:22:753:-50.3183,0,-99.9007 0/1:14:8,6:8:279:6:204:-14.478,0,-21.2342 0/1:22:14,8:14:476:8:278:-18.7334,0,-36.5426 dDocent_Contig_11467 27 . C T 49.1652 . AB=0.139535;ABP=51.5402;AC=2;AF=0.5;AN=4;AO=6;CIGAR=1X;DP=43;DPB=43;DPRA=0;EPP=16.0391;EPPR=83.3548;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=59.8378;NS=2;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=0.945946;PAO=0;PQA=0;PQR=0;PRO=0;QA=230;QR=1446;RO=37;RPL=0;RPP=16.0391;RPPR=83.3548;RPR=6;RUN=1;SAF=6;SAP=16.0391;SAR=0;SRF=37;SRP=83.3548;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:27:23,4:23:890:4:156:-6.28931,0,-72.2723 0/1:16:14,2:14:556:2:74:-2.20929,0,-45.5561 ./.:.:.:.:.:.:.:. dDocent_Contig_11468 35 . T C 102.928 . AB=0.16;ABP=53.2147;AC=2;AF=0.333333;AN=6;AO=8;CIGAR=1X;DP=71;DPB=71;DPRA=1.19048;EPP=20.3821;EPPR=139.813;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=311;QR=2161;RO=63;RPL=0;RPP=20.3821;RPPR=139.813;RPR=8;RUN=1;SAF=8;SAP=20.3821;SAR=0;SRF=63;SRP=139.813;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:21:16,5:16:545:5:196:-11.692,0,-43.0483 0/0:21:21,0:21:730:0:0:0,-6.32163,-66.0178 0/1:29:26,3:26:886:3:115:-1.99486,0,-71.3147 dDocent_Contig_11470 8 . A C 115.612 . AB=0.25;ABP=16.0391;AC=1;AF=0.166667;AN=6;AO=6;CIGAR=1X;DP=77;DPB=77;DPRA=0.90566;EPP=16.0391;EPPR=155.013;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=225;QR=2664;RO=70;RPL=0;RPP=16.0391;RPPR=155.013;RPR=6;RUN=1;SAF=6;SAP=16.0391;SAR=0;SRF=70;SRP=155.013;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:37:37,0:37:1396:0:0:0,-11.1381,-125.926 0/0:16:15,0:15:578:0:0:0,-4.51545,-51.9729 0/1:24:18,6:18:690:6:225:-13.3851,0,-55.2097 dDocent_Contig_11471 149 . G A 34.6315 . AB=0.173913;ABP=24.253;AC=2;AF=0.333333;AN=6;AO=4;CIGAR=1X;DP=29;DPB=29;DPRA=1.91667;EPP=11.6962;EPPR=57.2971;GTI=0;LEN=1;MEANALT=1;MQM=37;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=0;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=152;QR=900;RO=25;RPL=0;RPP=11.6962;RPPR=57.2971;RPR=4;RUN=1;SAF=0;SAP=11.6962;SAR=4;SRF=0;SRP=57.2971;SRR=25;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:18:16,2:16:572:2:78:-0.511428,0,-46.3894 0/0:6:6,0:6:222:0:0:0,-1.80618,-20.3381 0/1:5:3,2:3:106:2:74:-5.28222,0,-8.38374 dDocent_Contig_11473 150 . T G 638.864 . AB=0.423729;ABP=5.99147;AC=3;AF=0.5;AN=6;AO=25;CIGAR=1X;DP=59;DPB=59;DPRA=0;EPP=48.9587;EPPR=76.8404;GTI=0;LEN=1;MEANALT=1;MQM=46.96;MQMR=60;NS=3;NUMALT=1;ODDS=3.46945e-18;PAIRED=0;PAIREDR=0.941176;PAO=0;PQA=0;PQR=0;PRO=0;QA=983;QR=1346;RO=34;RPL=24;RPP=48.9587;RPPR=76.8404;RPR=1;RUN=1;SAF=0;SAP=57.2971;SAR=25;SRF=0;SRP=76.8404;SRR=34;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:42:22,20:22:872:20:795:-57.4465,0,-66.1472 0/1:10:6,4:6:238:4:154:-9.94058,0,-18.7835 0/1:7:6,1:6:236:1:34:-1.1955,0,-19.5043 dDocent_Contig_11474 14 . C T 1385.03 . AB=0.0526316;ABP=69.0688;AC=0;AF=0;AN=6;AO=2;CIGAR=1X3M1X;DP=254;DPB=254;DPRA=0;EPP=7.35324;EPPR=352.617;GTI=0;LEN=1;MEANALT=3;MQM=39;MQMR=50;NS=3;NUMALT=3;ODDS=0;PAIRED=0;PAIREDR=0.130435;PAO=0;PQA=0;PQR=0;PRO=0;QA=76;QR=6358;RO=161;RPL=0;RPP=7.35324;RPPR=352.617;RPR=2;RUN=1;SAF=2;SAP=7.35324;SAR=0;SRF=161;SRP=352.617;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|0:131:83,7,32,0:83:3289:7,32,0:277,1251,0:-74.9335,-78.8769,-328.752,0,-231.001,-242.407,-99.919,-330.86,-252.04,-351.898 0|0:38:20,0,15,2:20:781:0,15,2:0,552,76:-36.872,-42.8926,-104.708,0,-61.8954,-57.3799,-37.1144,-98.9327,-56.1202,-98.3306 0|0:85:58,6,16,0:58:2288:6,16,0:238,631,0:-32.2206,-31.6066,-210.222,0,-162.364,-175.621,-49.6803,-212.028,-180.437,-230.101 dDocent_Contig_11476 106 . N A 64.6622 . AB=0;ABP=0;AC=2;AF=1;AN=2;AO=2;CIGAR=2X;DP=2;DPB=2;DPRA=0;EPP=7.35324;EPPR=0;GTI=0;LEN=1;MEANALT=1;MQM=41;MQMR=0;NS=1;NUMALT=1;ODDS=5.99146;PAIRED=1;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=70;QR=0;RO=0;RPL=0;RPP=7.35324;RPPR=0;RPR=2;RUN=1;SAF=0;SAP=7.35324;SAR=2;SRF=0;SRP=0;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL .:.:.:.:.:.:.:. .:.:.:.:.:.:.:. 1|1:2:0,2:0:0:2:70:-6.46514,-0.60206,0 dDocent_Contig_11477 27 . A G 63.8409 . AB=0.138889;ABP=43.7857;AC=1;AF=0.166667;AN=6;AO=6;CIGAR=1X;DP=68;DPB=68;DPRA=4.35714;EPP=16.0391;EPPR=137.642;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=242;QR=2465;RO=62;RPL=0;RPP=16.0391;RPPR=137.642;RPR=6;RUN=1;SAF=6;SAP=16.0391;SAR=0;SRF=62;SRP=137.642;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:36:31,5:31:1223:5:204:-7.90695,0,-99.5095 0/0:7:7,0:7:284:0:0:0,-2.10721,-25.934 0/0:25:24,1:24:958:1:38:0,-3.72848,-82.7197 dDocent_Contig_11478 15 . A G 2830.46 . AB=0.0367647;ABP=256.498;AC=0;AF=0;AN=6;AO=5;CIGAR=2X1M2X;DP=151;DPB=151;DPRA=0;EPP=13.8677;EPPR=113.755;GTI=0;LEN=1;MEANALT=2.5;MQM=10.6;MQMR=60;NS=3;NUMALT=2;ODDS=0;PAIRED=0;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=194;QR=2000;RO=51;RPL=0;RPP=13.8677;RPPR=113.755;RPR=5;RUN=1;SAF=5;SAP=13.8677;SAR=0;SRF=51;SRP=113.755;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|0:113:40,2,70:40:1566:2,70:80,2749:-214.233,-225.085,-353.245,0,-127.757,-107.869 0|0:23:7,3,13:7:276:3,13:114,504:-39.5256,-39.6201,-61.4279,0,-20.9279,-18.994 0|0:15:4,0,11:4:158:0,11:0,433:-34.8096,-36.0137,-49.016,0,-13.3965,-10.0852 dDocent_Contig_11479 115 . A G 503.283 . AB=0.137931;ABP=69.053;AC=4;AF=0.666668;AN=6;AO=8;CIGAR=1X2M2X2M1X9M1X1M;DP=103;DPB=103;DPRA=0;EPP=20.3821;EPPR=68.1545;GTI=0;LEN=1;MEANALT=7.5;MQM=60;MQMR=60;NS=3;NUMALT=9;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=277;QR=1083;RO=30;RPL=0;RPP=20.3821;RPPR=68.1545;RPR=8;RUN=1;SAF=0;SAP=20.3821;SAR=8;SRF=0;SRP=68.1545;SRR=30;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|1:30:17,0,1,0,0,1,2,2,0,3:17:614:0,1,0,0,1,2,2,0,3:0,34,0,0,36,71,71,0,100:-2.97037,-8.08788,-58.2064,-5.33091,-55.449,-55.148,-8.08788,-58.2064,-55.449,-58.2064,-8.08788,-58.2064,-55.449,-58.2064,-58.2064,-5.14982,-55.2689,-52.5115,-55.2689,-55.2689,-54.9679,-2.30223,-52.4214,-49.6641,-52.4214,-52.4214,-49.4839,-51.8194,-2.30223,-52.4214,-49.6641,-52.4214,-52.4214,-49.4839,-46.6365,-51.8194,-8.08788,-58.2064,-55.449,-58.2064,-58.2064,-55.2689,-52.4214,-52.4214,-58.2064,0,-50.1155,-47.3583,-50.1155,-50.1155,-47.1781,-44.3308,-44.3308,-50.1155,-49.2124 1|1:45:6,0,3,3,12,5,0,8,3,0:6:218:0,3,3,12,5,0,8,3,0:0,100,105,428,172,0,279,108,0:-37.9762,-39.7824,-57.5887,-31.6888,-49.4953,-48.5922,-31.2386,-49.0452,-40.9518,-48.1421,-4.886,-22.6945,-14.6009,-14.1504,-19.0821,-25.8135,-43.6203,-35.5269,-35.0767,-8.72537,-42.1151,-39.7824,-57.5887,-49.4953,-49.0452,-22.6945,-43.6203,-57.5887,-17.0887,-34.8959,-26.8026,-26.3522,0,-20.9274,-34.8959,-32.4876,-30.9687,-48.7754,-40.682,-40.2318,-13.8804,-34.8069,-48.7754,-26.0823,-47.8723,-39.7824,-57.5887,-49.4953,-49.0452,-22.6945,-43.6203,-57.5887,-34.8959,-48.7754,-57.5887 0|1:28:7,3,6,0,0,3,0,2,0,5:7:251:3,6,0,0,3,0,2,0,5:106,209,0,0,107,0,72,0,177:-14.8877,-8.36196,-27.9321,0,-11.8404,-18.6666,-16.9949,-28.8351,-20.4728,-37.4679,-16.9949,-28.8351,-20.4728,-37.4679,-37.4679,-8.27166,-20.1123,-11.7501,-28.745,-28.745,-27.8419,-16.9949,-28.8351,-20.4728,-37.4679,-37.4679,-28.745,-37.4679,-11.1193,-22.9598,-14.5976,-31.5926,-31.5926,-22.8696,-31.5926,-30.9905,-16.9949,-28.8351,-20.4728,-37.4679,-37.4679,-28.745,-37.4679,-31.5926,-37.4679,-2.57665,-14.4174,-6.0555,-23.0501,-23.0501,-14.3271,-23.0501,-17.1747,-23.0501,-21.5449 dDocent_Contig_11480 9 . G A 133.025 . AB=0.108247;ABP=261.617;AC=1;AF=0.166667;AN=6;AO=25;CIGAR=1X;DP=388;DPB=388;DPRA=2.08667;EPP=57.2971;EPPR=789.083;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=52.9365;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=0.629834;PAO=0;PQA=0;PQR=0;PRO=0;QA=966;QR=13764;RO=362;RPL=0;RPP=57.2971;RPPR=789.083;RPR=25;RUN=1;SAF=25;SAP=57.2971;SAR=0;SRF=362;SRP=789.083;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:194:173,21:173:6537:21:810:-14.8254,0,-479.28 0/0:75:74,0:74:2818:0:0:0,-22.2762,-229.714 0/0:119:115,4:115:4409:4:156:0,-21.4053,-370.737 dDocent_Contig_11481 13 . G A 625.377 . AB=0.106383;ABP=66.2602;AC=0;AF=0;AN=6;AO=5;CIGAR=2X;DP=51;DPB=51;DPRA=0;EPP=13.8677;EPPR=44.2683;GTI=0;LEN=1;MEANALT=2.5;MQM=60;MQMR=60;NS=3;NUMALT=3;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=201;QR=731;RO=19;RPL=0;RPP=13.8677;RPPR=44.2683;RPR=5;RUN=1;SAF=5;SAP=13.8677;SAR=0;SRF=19;SRP=44.2683;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|0:33:13,3,13,4:13:493:3,13,4:119,503,161:-37.2605,-31.3776,-70.8878,0,-30.6074,-36.4909,-27.9022,-58.5195,-27.1316,-67.112 0|0:14:6,2,0,6:6:238:2,0,6:82,0,233:-17.3225,-12.3552,-31.3489,-19.1287,-31.951,-38.7216,0,-12.8104,-19.5818,-17.7756 0|0:4:0,0,3,1:0:0:0,3,1:0,119,40:-13.4547,-13.4547,-13.4547,-3.69465,-3.69465,-2.79156,-10.1585,-10.1585,0,-9.85749 dDocent_Contig_11484 134 . T G 764.836 . AB=0.178571;ABP=53.2644;AC=3;AF=0.5;AN=6;AO=10;CIGAR=1X2M;DP=63;DPB=63;DPRA=0;EPP=24.725;EPPR=50.7827;GTI=0;LEN=1;MEANALT=2.5;MQM=60;MQMR=60;NS=3;NUMALT=2;ODDS=6.93889e-18;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=370;QR=793;RO=22;RPL=0;RPP=24.725;RPPR=50.7827;RPR=10;RUN=1;SAF=0;SAP=24.725;SAR=10;SRF=0;SRP=50.7827;SRR=22;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|1:42:12,24,5:12:441:24,5:824,176:-63.2887,0,-28.8447,-52.5832,-21.7565,-87.1416 0|1:7:5,2,0:5:168:2,0:67,0:-4.25563,0,-13.3416,-5.76078,-13.9436,-19.3692 0|1:14:5,4,5:5:184:4,5:133,194:-14.4613,-5.22962,-19.0611,0,-4.31951,-13.56 dDocent_Contig_11485 31 . T C 58.8891 . AB=0.272727;ABP=7.94546;AC=1;AF=0.166667;AN=6;AO=3;CIGAR=1X;DP=23;DPB=23;DPRA=1.83333;EPP=9.52472;EPPR=46.4397;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=115;QR=812;RO=20;RPL=0;RPP=9.52472;RPPR=46.4397;RPR=3;RUN=1;SAF=3;SAP=9.52472;SAR=0;SRF=20;SRP=46.4397;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:11:8,3:8:324:3:115:-7.41105,0,-26.2175 0/0:1:1,0:1:40:0:0:0,-0.30103,-3.99568 0/0:11:11,0:11:448:0:0:0,-3.31133,-40.676 dDocent_Contig_11486 8 . A T 37.4484 . AB=0.368421;ABP=5.8675;AC=2;AF=0.333333;AN=6;AO=8;CIGAR=2X2M1X1M1X2M1X;DP=38;DPB=38;DPRA=0;EPP=20.3821;EPPR=65.983;GTI=0;LEN=1;MEANALT=1.33333;MQM=20;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=0;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=314;QR=1112;RO=29;RPL=0;RPP=20.3821;RPPR=65.983;RPR=8;RUN=1;SAF=8;SAP=20.3821;SAR=0;SRF=29;SRP=65.983;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|0:19:17,1:17:648:1:38:0,-3.64493,-56.6269 0|1:9:6,3:6:227:3:119:-2.87772,0,-18.0813 0|1:10:6,4:6:237:4:157:-4.37055,0,-18.6934 dDocent_Contig_11487 18 . T C 305.26 . AB=0.153846;ABP=111.25;AC=2;AF=0.333333;AN=6;AO=16;CIGAR=7M2X8M2X3M;DP=126;DPB=121.591;DPRA=2.36364;EPP=37.7539;EPPR=174.557;GTI=0;LEN=1;MEANALT=6;MQM=60;MQMR=60;NS=3;NUMALT=5;ODDS=0;PAIRED=1;PAIREDR=0.658228;PAO=0;PQA=0;PQR=0;PRO=0;QA=633;QR=3059;RO=79;RPL=0;RPP=37.7539;RPPR=174.557;RPR=16;RUN=1;SAF=16;SAP=37.7539;SAR=0;SRF=79;SRP=174.557;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|1:53:38,6,6,0,0,0:38:1475:6,6,0,0,0:233,239,0,0,0:-8.24805,-1.47815,-120.851,0,-102.975,-119.388,-19.6872,-122.657,-121.194,-140.876,-19.6872,-122.657,-121.194,-140.876,-140.876,-19.6872,-122.657,-121.194,-140.876,-140.876,-140.876 0|0:22:19,1,0,0,0,0:19:726:1,0,0,0,0:40,0,0,0,0:0,-2.56879,-61.9511,-5.71957,-62.2521,-65.3603,-5.71957,-62.2521,-65.3603,-65.3603,-5.71957,-62.2521,-65.3603,-65.3603,-65.3603,-5.71957,-62.2521,-65.3603,-65.3603,-65.3603,-65.3603 0|1:51:22,0,10,6,3,6:22:858:0,10,6,3,6:0,394,194,121,244:-25.7961,-32.4187,-102.949,0,-70.5329,-67.5226,-16.7899,-87.3122,-54.8987,-85.506,-22.4424,-92.9732,-60.5573,-77.3374,-92.0702,-12.2866,-82.8194,-50.4028,-67.184,-72.8438,-81.0132 dDocent_Contig_11488 7 . C T 243.56 . AB=0.25;ABP=7.35324;AC=3;AF=0.5;AN=6;AO=8;CIGAR=1X;DP=20;DPB=20;DPRA=1.16667;EPP=20.3821;EPPR=29.068;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=306;QR=456;RO=12;RPL=0;RPP=20.3821;RPPR=29.068;RPR=8;RUN=1;SAF=8;SAP=20.3821;SAR=0;SRF=12;SRP=29.068;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 1/1:6:0,6:0:0:6:228:-20.8835,-1.80618,0 0/0:6:6,0:6:228:0:0:0,-1.80618,-20.8842 0/1:8:6,2:6:228:2:78:-4.99523,0,-18.4757 dDocent_Contig_11489 16 . A G 255.873 . AB=0.245283;ABP=32.8783;AC=3;AF=0.5;AN=6;AO=13;CIGAR=1X3M1X;DP=53;DPB=53;DPRA=0;EPP=31.2394;EPPR=89.8692;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=3.46945e-18;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=510;QR=1578;RO=40;RPL=0;RPP=31.2394;RPPR=89.8692;RPR=13;RUN=1;SAF=13;SAP=31.2394;SAR=0;SRF=40;SRP=89.8692;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|1:35:27,8:27:1063:8:308:-17.5433,0,-85.4296 0|1:4:3,1:3:118:1:40:-2.79156,0,-9.79877 0|1:14:10,4:10:397:4:162:-10.7525,0,-31.8737 dDocent_Contig_11490 7 . C T 40.3089 . AB=0.153846;ABP=30.0702;AC=1;AF=0.166667;AN=6;AO=4;CIGAR=1X;DP=92;DPB=92;DPRA=0.787879;EPP=11.6962;EPPR=194.1;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=0.988636;PAO=0;PQA=0;PQR=0;PRO=0;QA=148;QR=3330;RO=88;RPL=0;RPP=11.6962;RPPR=194.1;RPR=4;RUN=1;SAF=4;SAP=11.6962;SAR=0;SRF=88;SRP=194.1;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:37:37,0:37:1419:0:0:0,-11.1381,-127.991 0/1:26:22,4:22:821:4:148:-5.85476,0,-66.3811 0/0:29:29,0:29:1090:0:0:0,-8.72987,-98.4033 dDocent_Contig_11491 10 . C T 67.9391 . AB=0.428571;ABP=3.32051;AC=1;AF=0.166667;AN=6;AO=3;CIGAR=1X;DP=70;DPB=70;DPRA=0.222222;EPP=9.52472;EPPR=146.327;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=115;QR=2653;RO=66;RPL=0;RPP=9.52472;RPPR=146.327;RPR=3;RUN=1;SAF=3;SAP=9.52472;SAR=0;SRF=66;SRP=146.327;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:49:48,0:48:1927:0:0:0,-14.4494,-173.442 0/1:7:4,3:4:159:3:115:-8.61782,0,-12.5842 0/0:14:14,0:14:567:0:0:0,-4.21442,-51.372 dDocent_Contig_11492 191 . G A 209.386 . AB=0.23913;ABP=30.2009;AC=3;AF=0.5;AN=6;AO=11;CIGAR=2X;DP=46;DPB=46;DPRA=0;EPP=26.8965;EPPR=79.0118;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=3.46945e-18;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=435;QR=1374;RO=35;RPL=11;RPP=26.8965;RPPR=79.0118;RPR=0;RUN=1;SAF=0;SAP=26.8965;SAR=11;SRF=0;SRP=79.0118;SRR=35;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|1:23:18,5:18:711:5:203:-11.7292,0,-57.3927 0|1:3:2,1:2:80:1:40:-3.09259,0,-6.68848 0|1:20:15,5:15:583:5:192:-11.6281,0,-46.7782 dDocent_Contig_11493 7 . C T 276.427 . AB=0.178947;ABP=88.0634;AC=2;AF=0.333333;AN=6;AO=20;CIGAR=1X;DP=164;DPB=164;DPRA=0;EPP=46.4397;EPPR=309.188;GTI=0;LEN=1;MEANALT=1.33333;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=767;QR=5439;RO=141;RPL=0;RPP=46.4397;RPPR=309.188;RPR=20;RUN=1;SAF=20;SAP=46.4397;SAR=0;SRF=141;SRP=309.188;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:72:60,12:60:2318:12:462:-20.2564,0,-187.157 0/1:23:18,5:18:683:5:194:-10.9092,0,-54.8756 0/0:69:63,3:63:2438:3:111:0,-9.87162,-209.28 dDocent_Contig_11494 7 . C T 31.1152 . AB=0.285714;ABP=5.80219;AC=1;AF=0.166667;AN=6;AO=2;CIGAR=1X;DP=17;DPB=17;DPRA=1.4;EPP=7.35324;EPPR=35.5824;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=71;QR=583;RO=15;RPL=0;RPP=7.35324;RPPR=35.5824;RPR=2;RUN=1;SAF=2;SAP=7.35324;SAR=0;SRF=15;SRP=35.5824;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:7:5,2:5:195:2:71:-4.63387,0,-15.817 0/0:7:7,0:7:271:0:0:0,-2.10721,-24.7563 0/0:3:3,0:3:117:0:0:0,-0.90309,-10.9104 dDocent_Contig_11496 8 . A T 2897.52 . AB=0.409639;ABP=20.6699;AC=4;AF=0.666667;AN=6;AO=102;CIGAR=1M1X;DP=249;DPB=249;DPRA=0;EPP=224.5;EPPR=155.013;GTI=0;LEN=1;MEANALT=3;MQM=54.8824;MQMR=60;NS=3;NUMALT=3;ODDS=0;PAIRED=0.794118;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=3932;QR=2675;RO=70;RPL=0;RPP=224.5;RPPR=155.013;RPR=102;RUN=1;SAF=102;SAP=224.5;SAR=0;SRF=70;SRP=155.013;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|1:166:52,48,14,52:52:1986:48,14,52:1846,537,2006:-138.176,-2.26616,-150.769,-109.752,-121.14,-268.486,0,-11.3871,-118.868,-147.291 1|1:15:2,1,4,8:2:73:1,4,8:36,154,306:-31.2069,-28.8733,-34.5335,-19.1627,-22.1882,-23.9198,-6.69737,-9.72216,0,-10.2487 0|1:68:16,8,2,42:16:616:8,2,42:299,78,1620:-125.891,-106.225,-154.396,-124.295,-150.392,-174.272,0,-26.1036,-44.1705,-37.9397 dDocent_Contig_11497 96 . T G 203.137 . AB=0.344828;ABP=9.07545;AC=1;AF=0.166667;AN=6;AO=10;CIGAR=1X;DP=58;DPB=58;DPRA=2;EPP=24.725;EPPR=107.241;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=1.73472e-18;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=336;QR=1609;RO=48;RPL=10;RPP=24.725;RPPR=107.241;RPR=0;RUN=1;SAF=10;SAP=24.725;SAR=0;SRF=48;SRP=107.241;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:29:19,10:19:639:10:336:-21.8365,0,-49.0979 0/0:6:6,0:6:204:0:0:0,-1.80618,-18.6939 0/0:23:23,0:23:766:0:0:0,-6.92369,-69.2516 dDocent_Contig_11498 8 . A T 569.302 . AB=0.566667;ABP=4.16842;AC=4;AF=0.666667;AN=6;AO=20;CIGAR=1X;DP=33;DPB=33;DPRA=0;EPP=46.4397;EPPR=31.2394;GTI=0;LEN=1;MEANALT=1;MQM=59.65;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=0.65;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=760;QR=493;RO=13;RPL=0;RPP=46.4397;RPPR=31.2394;RPR=20;RUN=1;SAF=20;SAP=46.4397;SAR=0;SRF=13;SRP=31.2394;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:17:8,9:8:298:9:334:-25.2881,0,-22.0552 1/1:3:0,3:0:0:3:116:-10.8162,-0.90309,0 0/1:13:5,8:5:195:8:310:-24.3486,0,-14.0108 dDocent_Contig_11499 13 . C T 110.924 . AB=0.193548;ABP=28.2974;AC=1;AF=0.166667;AN=6;AO=6;CIGAR=1X;DP=87;DPB=87;DPRA=1.10714;EPP=16.0391;EPPR=178.9;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=0.987654;PAO=0;PQA=0;PQR=0;PRO=0;QA=243;QR=3226;RO=81;RPL=0;RPP=16.0391;RPPR=178.9;RPR=6;RUN=1;SAF=6;SAP=16.0391;SAR=0;SRF=81;SRP=178.9;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:52:52,0:52:2088:0:0:0,-15.6536,-188.1 0/0:4:4,0:4:162:0:0:0,-1.20412,-14.967 0/1:31:25,6:25:976:6:243:-12.9162,0,-78.7966 dDocent_Contig_11502 51 . T C 614.397 . AB=0.328947;ABP=22.325;AC=3;AF=0.5;AN=6;AO=25;CIGAR=1X;DP=76;DPB=76;DPRA=0;EPP=57.2971;EPPR=113.755;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=0.92;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=986;QR=1988;RO=51;RPL=25;RPP=57.2971;RPPR=113.755;RPR=0;RUN=1;SAF=25;SAP=57.2971;SAR=0;SRF=51;SRP=113.755;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:48:29,19:29:1142:19:750:-53.3782,0,-88.6205 0/1:3:1,2:1:41:2:78:-6.50021,0,-3.19148 0/1:25:21,4:21:805:4:158:-7.0749,0,-65.2459 dDocent_Contig_11504 18 . A C 53.8153 . AB=0.214286;ABP=12.937;AC=1;AF=0.166667;AN=6;AO=3;CIGAR=1X;DP=30;DPB=30;DPRA=1.75;EPP=9.52472;EPPR=59.4686;GTI=0;LEN=1;MEANALT=2;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=0.666667;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=120;QR=1048;RO=26;RPL=0;RPP=9.52472;RPPR=59.4686;RPR=3;RUN=1;SAF=3;SAP=9.52472;SAR=0;SRF=26;SRP=59.4686;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:14:10,3:10:409:3:120:-6.90436,0,-32.8932 0/0:5:5,0:5:195:0:0:0,-1.50515,-17.9215 0/0:11:11,0:11:444:0:0:0,-3.31133,-40.3152 dDocent_Contig_11505 107 . N T 193.288 . AB=0;ABP=0;AC=4;AF=1;AN=4;AO=9;CIGAR=1X;DP=9;DPB=9;DPRA=0;EPP=22.5536;EPPR=0;GTI=0;LEN=1;MEANALT=1;MQM=50.3333;MQMR=0;NS=2;NUMALT=1;ODDS=0;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=210;QR=0;RO=0;RPL=0;RPP=22.5536;RPPR=0;RPR=9;RUN=1;SAF=0;SAP=22.5536;SAR=9;SRF=0;SRP=0;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 1/1:7:0,7:0:0:7:185:-16.6514,-2.10721,0 ./.:.:.:.:.:.:.:. 1/1:2:0,2:0:0:2:25:-2.37496,-0.60206,0 dDocent_Contig_11508 120 . A T 703.815 . AB=0.642857;ABP=10.4553;AC=2;AF=0.333333;AN=6;AO=27;CIGAR=1X;DP=49;DPB=49;DPRA=3;EPP=61.6401;EPPR=50.7827;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=953;QR=768;RO=22;RPL=0;RPP=61.6401;RPPR=50.7827;RPR=27;RUN=1;SAF=0;SAP=61.6401;SAR=27;SRF=0;SRP=50.7827;SRR=22;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:37:11,26:11:385:26:917:-71.7078,0,-23.8482 0/1:5:4,1:4:139:1:36:-2.09312,0,-11.3475 0/0:7:7,0:7:244:0:0:0,-2.10721,-22.3001 dDocent_Contig_11509 62 . A T 110.387 . AB=0.333333;ABP=6.62942;AC=2;AF=0.333333;AN=6;AO=5;CIGAR=1X;DP=21;DPB=21;DPRA=1.25;EPP=13.8677;EPPR=37.7539;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=1.73472e-18;PAIRED=0;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=203;QR=651;RO=16;RPL=5;RPP=13.8677;RPPR=37.7539;RPR=0;RUN=1;SAF=5;SAP=13.8677;SAR=0;SRF=16;SRP=37.7539;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:11:9,2:9:366:2:81:-4.3744,0,-29.9938 0/0:6:6,0:6:244:0:0:0,-1.80618,-22.3388 0/1:4:1,3:1:41:3:122:-10.1684,0,-2.89045 dDocent_Contig_11510 22 . G A 49.6796 . AB=0.666667;ABP=3.73412;AC=1;AF=0.166667;AN=6;AO=2;CIGAR=1X;DP=42;DPB=42;DPRA=0.153846;EPP=7.35324;EPPR=89.8692;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=81;QR=1615;RO=40;RPL=0;RPP=7.35324;RPPR=89.8692;RPR=2;RUN=1;SAF=2;SAP=7.35324;SAR=0;SRF=40;SRP=89.8692;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:24:24,0:24:968:0:0:0,-7.22472,-87.4159 0/1:3:1,2:1:41:2:81:-6.78264,0,-3.19148 0/0:15:15,0:15:606:0:0:0,-4.51545,-54.8786 dDocent_Contig_11511 7 . C G 152.286 . AB=0;ABP=0;AC=0;AF=0;AN=6;AO=5;CIGAR=1X2M5D6M;DP=164;DPB=160.071;DPRA=0;EPP=13.8677;EPPR=333.074;GTI=0;LEN=1;MEANALT=1.5;MQM=60;MQMR=60;NS=3;NUMALT=2;ODDS=0;PAIRED=0.6;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=155;QR=5943;RO=152;RPL=0;RPP=13.8677;RPPR=333.074;RPR=5;RUN=1;SAF=5;SAP=13.8677;SAR=0;SRF=152;SRP=333.074;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|0:111:108,2,0:108:4226:2,0:52,0:0,-28.5201,-375.388,-32.5112,-375.99,-380.066 0|0:10:4,0,6:4:154:0,6:0,219:-17.0525,-18.2567,-30.9084,0,-13.0284,-11.2223 0|0:43:40,3,0:40:1563:3,0:103,0:0,-3.33558,-131.321,-12.0412,-132.224,-140.584 dDocent_Contig_11513 120 . C A 1100.07 . AB=0.235294;ABP=13.3567;AC=1;AF=0.166667;AN=6;AO=4;CIGAR=1X3M1X4M;DP=68;DPB=68;DPRA=0;EPP=11.6962;EPPR=39.9253;GTI=0;LEN=1;MEANALT=3;MQM=60;MQMR=60;NS=3;NUMALT=3;ODDS=6.93889e-18;PAIRED=0;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=137;QR=594;RO=17;RPL=0;RPP=11.6962;RPPR=39.9253;RPR=4;RUN=1;SAF=0;SAP=11.6962;SAR=4;SRF=0;SRP=39.9253;SRR=17;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|0:34:10,0,2,22:10:352:0,2,22:0,71,785:-59.2702,-62.2805,-90.9374,-56.4947,-85.1519,-84.5498,0,-28.6535,-22.8678,-22.0308 1|0:17:1,4,0,11:1:35:4,0,11:137,0,298:-30.3691,-19.5306,-21.1804,-30.6702,-22.3846,-33.5216,-8.26443,0,-11.1128,-7.8015 0|0:17:6,0,0,11:6:207:0,0,11:0,0,353:-25.8911,-27.6972,-44.5262,-27.6972,-44.5262,-44.5262,0,-17.1616,-17.1616,-13.8502 dDocent_Contig_11515 12 . G T 41.3081 . AB=0.157895;ABP=22.325;AC=1;AF=0.166667;AN=6;AO=3;CIGAR=1X;DP=39;DPB=39;DPRA=1.9;EPP=9.52472;EPPR=81.1833;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=122;QR=1417;RO=36;RPL=0;RPP=9.52472;RPPR=81.1833;RPR=3;RUN=1;SAF=3;SAP=9.52472;SAR=0;SRF=36;SRP=81.1833;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:19:16,3:16:632:3:122:-5.65292,0,-51.4891 0/0:1:1,0:1:40:0:0:0,-0.30103,-3.99568 0/0:19:19,0:19:745:0:0:0,-5.71957,-67.3566 dDocent_Contig_11516 15 . C T 39.5361 . AB=0.181818;ABP=22.3561;AC=2;AF=0.333333;AN=6;AO=5;CIGAR=1X;DP=82;DPB=82;DPRA=0;EPP=13.8677;EPPR=170.214;GTI=0;LEN=1;MEANALT=1;MQM=55.2;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=0.8;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=189;QR=3112;RO=77;RPL=0;RPP=13.8677;RPPR=170.214;RPR=5;RUN=1;SAF=5;SAP=13.8677;SAR=0;SRF=77;SRP=170.214;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:60:59,1:59:2388:1:41:0,-14.5811,-211.58 0/1:4:3,1:3:123:1:36:-2.39415,0,-10.2607 0/1:18:15,3:15:601:3:112:-5.02736,0,-49.0094 dDocent_Contig_11519 15 . A C 232.498 . AB=0.255814;ABP=25.2805;AC=2;AF=0.333333;AN=6;AO=11;CIGAR=1X;DP=45;DPB=45;DPRA=10.75;EPP=26.8965;EPPR=76.8404;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=433;QR=1340;RO=34;RPL=0;RPP=26.8965;RPPR=76.8404;RPR=11;RUN=1;SAF=11;SAP=26.8965;SAR=0;SRF=34;SRP=76.8404;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:24:16,8:16:641:8:315:-21.4889,0,-50.8008 0/0:2:2,0:2:78:0:0:0,-0.60206,-7.40347 0/1:19:16,3:16:621:3:118:-5.28332,0,-50.507 dDocent_Contig_11520 40 . T C 267.127 . AB=0.254902;ABP=29.6215;AC=3;AF=0.5;AN=6;AO=13;CIGAR=1X;DP=51;DPB=51;DPRA=0;EPP=31.2394;EPPR=85.5263;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=516;QR=1514;RO=38;RPL=0;RPP=31.2394;RPPR=85.5263;RPR=13;RUN=1;SAF=13;SAP=31.2394;SAR=0;SRF=38;SRP=85.5263;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:28:20,8:20:805:8:315:-20.2839,0,-64.3354 0/1:2:1,1:1:41:1:39:-3.2945,0,-3.49251 0/1:21:17,4:17:668:4:162:-8.64533,0,-54.1209 dDocent_Contig_11522 11 . G T 103.884 . AB=0.227273;ABP=17.2236;AC=1;AF=0.166667;AN=6;AO=5;CIGAR=1X;DP=83;DPB=83;DPRA=0.721311;EPP=13.8677;EPPR=172.385;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=0.987179;PAO=0;PQA=0;PQR=0;PRO=0;QA=205;QR=3081;RO=78;RPL=0;RPP=13.8677;RPPR=172.385;RPR=5;RUN=1;SAF=5;SAP=13.8677;SAR=0;SRF=78;SRP=172.385;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:53:53,0:53:2093:0:0:0,-15.9546,-188.555 0/0:8:8,0:8:322:0:0:0,-2.40824,-29.3483 0/1:22:17,5:17:666:5:205:-12.2123,0,-53.6468 dDocent_Contig_11523 11 . G A 63.5369 . AB=0.3;ABP=6.48466;AC=1;AF=0.166667;AN=6;AO=3;CIGAR=1X2M1X1M1X;DP=119;DPB=119;DPRA=0.183486;EPP=9.52472;EPPR=250.558;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=120;QR=4501;RO=114;RPL=0;RPP=9.52472;RPPR=250.558;RPR=3;RUN=1;SAF=3;SAP=9.52472;SAR=0;SRF=114;SRP=250.558;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|0:79:78,0:78:3080:0:0:0,-23.4803,-276.919 0|1:10:7,3:7:269:3:120:-8.1776,0,-21.5585 0|0:30:29,0:29:1152:0:0:0,-8.72987,-103.567 dDocent_Contig_11524 23 . C A 137.53 . AB=0.166667;ABP=55.1256;AC=2;AF=0.333333;AN=6;AO=9;CIGAR=1X;DP=56;DPB=56;DPRA=13.5;EPP=22.5536;EPPR=105.07;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=364;QR=1823;RO=47;RPL=0;RPP=22.5536;RPPR=105.07;RPR=9;RUN=1;SAF=9;SAP=22.5536;SAR=0;SRF=47;SRP=105.07;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:39:33,6:33:1290:6:241:-10.3261,0,-104.636 0/0:2:2,0:2:79:0:0:0,-0.60206,-7.49724 0/1:15:12,3:12:454:3:123:-6.94934,0,-36.6847 dDocent_Contig_11525 119 . A T 472.286 . AB=0.311475;ABP=21.8416;AC=4;AF=0.666667;AN=6;AO=23;CIGAR=1X;DP=65;DPB=65;DPRA=0;EPP=52.9542;EPPR=94.2121;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=757;QR=1502;RO=42;RPL=0;RPP=52.9542;RPPR=94.2121;RPR=23;RUN=1;SAF=0;SAP=52.9542;SAR=23;SRF=0;SRP=94.2121;SRR=42;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:44:29,15:29:1032:15:483:-30.5327,0,-79.9464 1/1:4:0,4:0:0:4:138:-12.7604,-1.20412,0 0/1:17:13,4:13:470:4:136:-7.45831,0,-37.5225 dDocent_Contig_11526 18 . C T 300.629 . AB=0.392857;ABP=5.80219;AC=1;AF=0.166667;AN=6;AO=11;CIGAR=1X;DP=45;DPB=45;DPRA=3.29412;EPP=26.8965;EPPR=76.8404;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=0;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=444;QR=1324;RO=34;RPL=0;RPP=26.8965;RPPR=76.8404;RPR=11;RUN=1;SAF=11;SAP=26.8965;SAR=0;SRF=34;SRP=76.8404;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:13:13,0:13:515:0:0:0,-3.91339,-46.6933 0/0:4:4,0:4:136:0:0:0,-1.20412,-12.5714 0/1:28:17,11:17:673:11:444:-31.8868,0,-52.4682 dDocent_Contig_11527 9 . G T 113.051 . AB=0.625;ABP=4.09604;AC=1;AF=0.166667;AN=6;AO=5;CIGAR=1X;DP=44;DPB=44;DPRA=0.444444;EPP=13.8677;EPPR=87.6977;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=169;QR=1477;RO=39;RPL=0;RPP=13.8677;RPPR=87.6977;RPR=5;RUN=1;SAF=5;SAP=13.8677;SAR=0;SRF=39;SRP=87.6977;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:10:10,0:10:377:0:0:0,-3.0103,-34.2824 0/0:26:26,0:26:987:0:0:0,-7.82678,-89.1423 0/1:8:3,5:3:113:5:169:-13.129,0,-8.13073 dDocent_Contig_11529 9 . G T 117.098 . AB=0.357143;ABP=5.49198;AC=1;AF=0.25;AN=4;AO=5;CIGAR=1X;DP=20;DPB=20;DPRA=2.33333;EPP=13.8677;EPPR=35.5824;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=2;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=195;QR=578;RO=15;RPL=0;RPP=13.8677;RPPR=35.5824;RPR=5;RUN=1;SAF=5;SAP=13.8677;SAR=0;SRF=15;SRP=35.5824;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL ./.:.:.:.:.:.:.:. 0/0:6:6,0:6:229:0:0:0,-1.80618,-20.9753 0/1:14:9,5:9:349:5:195:-13.7098,0,-27.5563 dDocent_Contig_11530 16 . C T 41.0092 . AB=0.222222;ABP=15.074;AC=1;AF=0.166667;AN=6;AO=11;CIGAR=1X;DP=69;DPB=69;DPRA=0;EPP=26.8965;EPPR=128.956;GTI=0;LEN=1;MEANALT=1;MQM=25.8182;MQMR=59.8793;NS=3;NUMALT=1;ODDS=0;PAIRED=0.272727;PAIREDR=0.965517;PAO=0;PQA=0;PQR=0;PRO=0;QA=444;QR=2339;RO=58;RPL=0;RPP=26.8965;RPPR=128.956;RPR=11;RUN=1;SAF=11;SAP=26.8965;SAR=0;SRF=58;SRP=128.956;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:32:27,5:27:1078:5:200:0,-2.2784,-89.9335 0/0:19:17,2:17:693:2:81:0,-3.63043,-60.6089 0/1:18:14,4:14:568:4:163:-5.92478,0,-46.0434 dDocent_Contig_11531 8 . A C 244.396 . AB=0.642857;ABP=5.49198;AC=1;AF=0.166667;AN=6;AO=10;CIGAR=1X;DP=67;DPB=67;DPRA=0.485294;EPP=24.725;EPPR=124.613;GTI=0;LEN=1;MEANALT=1.5;MQM=52.7;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=0.7;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=379;QR=2162;RO=56;RPL=0;RPP=24.725;RPPR=124.613;RPR=10;RUN=1;SAF=10;SAP=24.725;SAR=0;SRF=56;SRP=124.613;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:34:34,0:34:1308:0:0:0,-10.235,-118.007 0/1:14:5,9:5:193:9:340:-26.2635,0,-13.5269 0/0:19:17,1:17:661:1:39:0,-3.07356,-57.0925 dDocent_Contig_11532 47 . A G 48.4796 . AB=0.1875;ABP=16.582;AC=1;AF=0.166667;AN=6;AO=3;CIGAR=1X;DP=36;DPB=36;DPRA=1.6;EPP=9.52472;EPPR=74.6689;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=120;QR=1316;RO=33;RPL=0;RPP=9.52472;RPPR=74.6689;RPR=3;RUN=1;SAF=3;SAP=9.52472;SAR=0;SRF=33;SRP=74.6689;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:16:13,3:13:510:3:120:-6.37083,0,-41.4303 0/0:8:8,0:8:323:0:0:0,-2.40824,-29.4386 0/0:12:12,0:12:483:0:0:0,-3.61236,-43.8216 dDocent_Contig_11533 107 . N G 79.7138 . AB=0;ABP=0;AC=4;AF=1;AN=4;AO=3;CIGAR=1X;DP=3;DPB=3;DPRA=0;EPP=9.52472;EPPR=0;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=0;NS=2;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=79;QR=0;RO=0;RPL=0;RPP=9.52472;RPPR=0;RPR=3;RUN=1;SAF=0;SAP=9.52472;SAR=3;SRF=0;SRP=0;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 1/1:2:0,2:0:0:2:46:-4.36947,-0.60206,0 ./.:.:.:.:.:.:.:. 1/1:1:0,1:0:0:1:33:-3.29913,-0.30103,0 dDocent_Contig_11534 61 . A G 86.5804 . AB=0.25;ABP=7.35324;AC=1;AF=0.25;AN=4;AO=2;CIGAR=1X3M1X;DP=21;DPB=21;DPRA=0;EPP=7.35324;EPPR=35.5824;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=2;NUMALT=2;ODDS=0;PAIRED=0;PAIREDR=0.733333;PAO=0;PQA=0;PQR=0;PRO=0;QA=79;QR=577;RO=15;RPL=2;RPP=7.35324;RPPR=35.5824;RPR=0;RUN=1;SAF=2;SAP=7.35324;SAR=0;SRF=15;SRP=35.5824;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|0:13:9,0,3:9:351:0,3:0,121:-7.26745,-9.97671,-38.8206,0,-28.8435,-27.9404 .:.:.:.:.:.:.:. 0|1:8:6,2,0:6:226:2,0:79,0:-5.08939,0,-18.2917,-6.89557,-18.8938,-25.3993 dDocent_Contig_11535 46 . C A 363.075 . AB=0.322581;ABP=11.486;AC=4;AF=0.666667;AN=6;AO=13;CIGAR=1X;DP=34;DPB=34;DPRA=0;EPP=31.2394;EPPR=48.6112;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=515;QR=825;RO=21;RPL=0;RPP=31.2394;RPPR=48.6112;RPR=13;RUN=1;SAF=13;SAP=31.2394;SAR=0;SRF=21;SRP=48.6112;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:20:11,9:11:439:9:364:-27.1042,0,-33.844 0/1:11:10,1:10:386:1:36:-0.286945,0,-31.7827 1/1:3:0,3:0:0:3:115:-10.7232,-0.90309,0 dDocent_Contig_11536 111 . C T 33.1855 . AB=0.4;ABP=3.44459;AC=1;AF=0.166667;AN=6;AO=2;CIGAR=1X;DP=33;DPB=33;DPRA=0.357143;EPP=7.35324;EPPR=70.3259;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=70;QR=1068;RO=31;RPL=0;RPP=7.35324;RPPR=70.3259;RPR=2;RUN=1;SAF=0;SAP=7.35324;SAR=2;SRF=0;SRP=70.3259;SRR=31;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:20:20,0:20:695:0:0:0,-6.0206,-62.8735 0/1:5:3,2:3:105:2:70:-5.14225,0,-8.29101 0/0:8:8,0:8:268:0:0:0,-2.40824,-24.4462 dDocent_Contig_11538 31 . C T 193.134 . AB=0.105455;ABP=374.837;AC=2;AF=0.333333;AN=6;AO=29;CIGAR=1X;DP=305;DPB=305;DPRA=4.58333;EPP=65.983;EPPR=602.337;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=0.996377;PAO=0;PQA=0;PQR=0;PRO=0;QA=1166;QR=11046;RO=276;RPL=0;RPP=65.983;RPPR=602.337;RPR=29;RUN=1;SAF=29;SAP=65.983;SAR=0;SRF=276;SRP=602.337;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:186:168,18:168:6743:18:720:-9.13348,0,-550.572 0/0:30:30,0:30:1181:0:0:0,-9.0309,-106.574 0/1:89:78,11:78:3122:11:446:-13.7028,0,-254.258 dDocent_Contig_11543 13 . T C 234.281 . AB=0.150442;ABP=122.941;AC=3;AF=0.5;AN=6;AO=17;CIGAR=1X;DP=113;DPB=113;DPRA=0;EPP=39.9253;EPPR=211.472;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=687;QR=3876;RO=96;RPL=0;RPP=39.9253;RPPR=211.472;RPR=17;RUN=1;SAF=17;SAP=39.9253;SAR=0;SRF=96;SRP=211.472;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:55:49,6:49:1983:6:244:-5.78218,0,-162.099 0/1:29:24,5:24:960:5:203:-9.92319,0,-77.9653 0/1:29:23,6:23:933:6:240:-13.2456,0,-75.5406 dDocent_Contig_11546 21 . C A 6349.93 . AB=0.60597;ABP=35.6861;AC=3;AF=0.5;AN=6;AO=203;CIGAR=3M1D1X;DP=335;DPB=272.8;DPRA=0;EPP=443.819;EPPR=211.472;GTI=0;LEN=1;MEANALT=1.66667;MQM=60;MQMR=60;NS=3;NUMALT=2;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=8122;QR=3789;RO=96;RPL=0;RPP=443.819;RPPR=211.472;RPR=203;RUN=1;SAF=203;SAP=443.819;SAR=0;SRF=96;SRP=211.472;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|1:202:70,103,29:70:2766:103,29:4161,1112:-321.97,0,-196.605,-251.793,-136.361,-470.662 0|1:27:5,22,0:5:203:22,0:883,0:-71.6495,0,-10.5252,-73.1546,-17.1479,-89.8979 0|1:106:21,78,7:21:820:78,7:3078,271:-246.897,0,-43.9256,-230.962,-45.1496,-296.257 dDocent_Contig_11548 12 . G A 90.5484 . AB=0.222222;ABP=21.1059;AC=2;AF=0.333333;AN=6;AO=6;CIGAR=1X2M1X;DP=31;DPB=31;DPRA=3.375;EPP=3.0103;EPPR=57.2971;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=0.666667;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=222;QR=985;RO=25;RPL=0;RPP=16.0391;RPPR=57.2971;RPR=6;RUN=1;SAF=3;SAP=3.0103;SAR=3;SRF=25;SRP=57.2971;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|1:14:11,3:11:436:3:108:-5.85951,0,-35.3805 0|0:4:4,0:4:158:0:0:0,-1.20412,-14.6003 0|1:13:10,3:10:391:3:114:-6.71809,0,-31.633 dDocent_Contig_11549 27 . T C 1166.95 . AB=0.709091;ABP=23.8959;AC=3;AF=0.5;AN=6;AO=39;CIGAR=1X;DP=55;DPB=55;DPRA=0;EPP=87.6977;EPPR=37.7539;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=1530;QR=638;RO=16;RPL=0;RPP=87.6977;RPPR=37.7539;RPR=39;RUN=1;SAF=39;SAP=87.6977;SAR=0;SRF=16;SRP=37.7539;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:33:8,25:8:318:25:969:-77.5653,0,-19.0503 0/1:4:1,3:1:38:3:123:-10.2607,0,-2.59315 0/1:18:7,11:7:282:11:438:-34.3562,0,-20.3341 dDocent_Contig_11551 24 . T C 1566.67 . AB=0.14963;ABP=722.746;AC=3;AF=0.5;AN=6;AO=101;CIGAR=2X1M1X;DP=675;DPB=675;DPRA=0;EPP=222.329;EPPR=1216.86;GTI=0;LEN=1;MEANALT=3;MQM=59.6832;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=0;PAIREDR=0.0411449;PAO=0;PQA=0;PQR=0;PRO=0;QA=4016;QR=22107;RO=559;RPL=0;RPP=222.329;RPPR=1216.86;RPR=101;RUN=1;SAF=101;SAP=222.329;SAR=0;SRF=559;SRP=1216.86;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|1:326:276,45:276:10916:45:1803:-65.4985,0,-884.805 0|1:131:105,21:105:4113:21:820:-35.7902,0,-331.853 0|1:218:178,35:178:7078:35:1393:-60.9017,0,-572.2 dDocent_Contig_11552 19 . A G 433.935 . AB=0.5;ABP=3.0103;AC=3;AF=0.5;AN=6;AO=16;CIGAR=1X;DP=32;DPB=32;DPRA=0;EPP=37.7539;EPPR=37.7539;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=638;QR=643;RO=16;RPL=0;RPP=37.7539;RPPR=37.7539;RPR=16;RUN=1;SAF=16;SAP=37.7539;SAR=0;SRF=16;SRP=37.7539;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:15:7,8:7:283:8:323:-24.9231,0,-21.327 0/1:8:3,5:3:120:5:192:-15.2378,0,-8.77907 0/1:9:6,3:6:240:3:123:-8.75552,0,-19.2646 dDocent_Contig_11553 83 . T C 146.206 . AB=0.28;ABP=13.5202;AC=1;AF=0.166667;AN=6;AO=7;CIGAR=1X;DP=36;DPB=36;DPRA=4.54545;EPP=18.2106;EPPR=63.8115;GTI=0;LEN=1;MEANALT=2;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=0.964286;PAO=0;PQA=0;PQR=0;PRO=0;QA=257;QR=1012;RO=28;RPL=7;RPP=18.2106;RPPR=63.8115;RPR=0;RUN=1;SAF=7;SAP=18.2106;SAR=0;SRF=28;SRP=63.8115;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:25:17,7:17:617:7:257:-16.1434,0,-48.5422 0/0:7:7,0:7:252:0:0:0,-2.10721,-23.0283 0/0:4:4,0:4:143:0:0:0,-1.20412,-13.2214 dDocent_Contig_11554 145 . G A 1202.5 . AB=0.0642857;ABP=233.869;AC=0;AF=0;AN=6;AO=9;CIGAR=3X;DP=140;DPB=140;DPRA=0;EPP=22.5536;EPPR=98.5551;GTI=0;LEN=1;MEANALT=3.66667;MQM=17;MQMR=60;NS=3;NUMALT=3;ODDS=0;PAIRED=0;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=309;QR=1687;RO=44;RPL=0;RPP=22.5536;RPPR=98.5551;RPR=9;RUN=1;SAF=0;SAP=22.5536;SAR=9;SRF=0;SRP=98.5551;SRR=44;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|0:74:29,5,24,16:29:1136:5,24,16:168,935,592:-68.2661,-70.9523,-162.911,0,-87.5421,-86.3604,-73.2812,-160.675,-89.8624,-161.893 0|0:15:6,1,5,1:6:237:1,5,1:32,165,41:-11.61,-12.2106,-31.4648,0,-18.433,-18.1296,-13.2024,-31.5473,-19.4233,-32.4507 0|0:51:9,3,16,23:9:314:3,16,23:109,593,841:-45.8967,-44.9346,-69.5867,0,-21.9194,-20.7776,-40.0474,-61.9247,-17.0416,-58.6536 dDocent_Contig_11555 13 . G T 73.1351 . AB=0.137931;ABP=69.053;AC=3;AF=0.5;AN=6;AO=8;CIGAR=1X;DP=58;DPB=58;DPRA=0;EPP=20.3821;EPPR=111.584;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=313;QR=1924;RO=50;RPL=0;RPP=20.3821;RPPR=111.584;RPR=8;RUN=1;SAF=8;SAP=20.3821;SAR=0;SRF=50;SRP=111.584;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:28:24,4:24:918:4:161:-6.44643,0,-74.4986 0/1:19:17,2:17:651:2:71:-1.02151,0,-53.2047 0/1:11:9,2:9:355:2:81:-4.3744,0,-29.0011 dDocent_Contig_11556 11 . G A 83.4587 . AB=0.135593;ABP=71.062;AC=2;AF=0.333333;AN=6;AO=8;CIGAR=1X;DP=79;DPB=79;DPRA=1.475;EPP=20.3821;EPPR=155.013;GTI=0;LEN=1;MEANALT=1.5;MQM=60;MQMR=59.3;NS=3;NUMALT=1;ODDS=3.46945e-18;PAIRED=1;PAIREDR=0.985714;PAO=0;PQA=0;PQR=0;PRO=0;QA=321;QR=2771;RO=70;RPL=0;RPP=20.3821;RPPR=155.013;RPR=8;RUN=1;SAF=8;SAP=20.3821;SAR=0;SRF=70;SRP=155.013;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:29:24,5:24:949:5:199:-9.55757,0,-76.945 0/0:20:20,0:20:777:0:0:0,-6.0206,-70.1933 0/1:30:26,3:26:1045:3:122:-2.23399,0,-85.1829 dDocent_Contig_11557 16 . T C 882.372 . AB=0.343137;ABP=24.8102;AC=3;AF=0.5;AN=6;AO=35;CIGAR=1X;DP=102;DPB=102;DPRA=0;EPP=79.0118;EPPR=148.499;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=1369;QR=2690;RO=67;RPL=0;RPP=79.0118;RPPR=148.499;RPR=35;RUN=1;SAF=35;SAP=79.0118;SAR=0;SRF=67;SRP=148.499;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:50:33,17:33:1331:17:684:-46.8355,0,-104.995 0/1:7:6,1:6:228:1:40:-1.88847,0,-18.7726 0/1:45:28,17:28:1131:17:645:-44.8249,0,-88.5232 dDocent_Contig_11558 12 . A C 32.4711 . AB=0.2;ABP=10.8276;AC=1;AF=0.166667;AN=6;AO=2;CIGAR=1X;DP=28;DPB=28;DPRA=1.11111;EPP=7.35324;EPPR=59.4686;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=82;QR=1014;RO=26;RPL=0;RPP=7.35324;RPPR=59.4686;RPR=2;RUN=1;SAF=2;SAP=7.35324;SAR=0;SRF=26;SRP=59.4686;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:10:8,2:8:295:2:82:-4.76938,0,-23.8842 0/0:2:2,0:2:81:0:0:0,-0.60206,-7.68573 0/0:16:16,0:16:638:0:0:0,-4.81648,-57.7514 dDocent_Contig_11559 12 . T G 145.5 . AB=0.172414;ABP=57.0725;AC=3;AF=0.5;AN=6;AO=10;CIGAR=1X;DP=58;DPB=58;DPRA=0;EPP=24.725;EPPR=107.241;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=0;PAIREDR=0.916667;PAO=0;PQA=0;PQR=0;PRO=0;QA=404;QR=1944;RO=48;RPL=0;RPP=24.725;RPPR=107.241;RPR=10;RUN=1;SAF=10;SAP=24.725;SAR=0;SRF=48;SRP=107.241;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:29:24,5:24:976:5:202:-9.832,0,-79.4064 0/1:14:12,2:12:485:2:81:-3.47131,0,-39.7868 0/1:15:12,3:12:483:3:121:-6.76475,0,-39.3021 dDocent_Contig_11560 40 . T C 173.871 . AB=0.25;ABP=13.8677;AC=4;AF=0.666667;AN=6;AO=7;CIGAR=1X;DP=22;DPB=22;DPRA=0;EPP=18.2106;EPPR=35.5824;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=1.73472e-18;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=286;QR=584;RO=15;RPL=0;RPP=18.2106;RPPR=35.5824;RPR=7;RUN=1;SAF=7;SAP=18.2106;SAR=0;SRF=15;SRP=35.5824;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:12:9,3:9:345:3:123:-7.85243,0,-27.7894 1/1:2:0,2:0:0:2:81:-7.68573,-0.60206,0 0/1:8:6,2:6:239:2:82:-5.37144,0,-19.4756 dDocent_Contig_11561 24 . T A 84.8382 . AB=0.153846;ABP=43.6001;AC=2;AF=0.333333;AN=6;AO=6;CIGAR=1X;DP=40;DPB=40;DPRA=19.5;EPP=16.0391;EPPR=76.8404;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=235;QR=1185;RO=34;RPL=0;RPP=16.0391;RPPR=76.8404;RPR=6;RUN=1;SAF=6;SAP=16.0391;SAR=0;SRF=34;SRP=76.8404;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:26:21,5:21:738:5:194:-10.0035,0,-58.9051 0/0:1:1,0:1:27:0:0:0,-0.30103,-2.69978 0/1:13:12,1:12:420:1:41:-0.181177,0,-34.2173 dDocent_Contig_11562 21 . A C 106.523 . AB=0.263158;ABP=12.2676;AC=1;AF=0.166667;AN=6;AO=14;CIGAR=1X;DP=232;DPB=232;DPRA=0;EPP=33.4109;EPPR=476.391;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=563;QR=8698;RO=218;RPL=0;RPP=33.4109;RPPR=476.391;RPR=14;RUN=1;SAF=14;SAP=33.4109;SAR=0;SRF=218;SRP=476.391;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:142:134,8:134:5364:8:324:0,-13.2173,-453.076 0/1:19:14,5:14:553:5:198:-12.4762,0,-44.3931 0/0:71:70,1:70:2781:1:41:0,-17.2786,-246.311 dDocent_Contig_11563 98 . N A 97.0363 . AB=0;ABP=0;AC=2;AF=1;AN=2;AO=3;CIGAR=1X;DP=3;DPB=3;DPRA=0;EPP=9.52472;EPPR=0;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=0;NS=1;NUMALT=1;ODDS=6.68461;PAIRED=1;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=104;QR=0;RO=0;RPL=3;RPP=9.52472;RPPR=0;RPR=0;RUN=1;SAF=3;SAP=9.52472;SAR=0;SRF=0;SRP=0;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 1/1:3:0,3:0:0:3:104:-9.70309,-0.90309,0 ./.:.:.:.:.:.:.:. ./.:.:.:.:.:.:.:. dDocent_Contig_11564 10 . T A 206.973 . AB=0.363636;ABP=4.78696;AC=1;AF=0.166667;AN=6;AO=4;CIGAR=1X2M2X;DP=45;DPB=45;DPRA=0.55;EPP=11.6962;EPPR=76.8404;GTI=0;LEN=1;MEANALT=1;MQM=58;MQMR=58.0294;NS=3;NUMALT=2;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=152;QR=1342;RO=34;RPL=0;RPP=11.6962;RPPR=76.8404;RPR=4;RUN=1;SAF=4;SAP=11.6962;SAR=0;SRF=34;SRP=76.8404;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|0:14:8,0,5:8:304:0,5:0,201:-13.4893,-15.8976,-40.662,0,-24.7571,-23.252 0|1:11:7,4,0:7:276:4,0:152,0:-10.7309,0,-21.8977,-12.8381,-23.1018,-35.5551 0|0:20:19,0,1:19:762:0,1:0,41:0,-5.71957,-68.4589,-2.09702,-65.2291,-64.928 dDocent_Contig_11565 26 . T A 794.399 . AB=0.4;ABP=9.52472;AC=3;AF=0.5;AN=6;AO=30;CIGAR=1X;DP=75;DPB=75;DPRA=0;EPP=68.1545;EPPR=100.727;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=0.966667;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=1183;QR=1761;RO=45;RPL=0;RPP=68.1545;RPPR=100.727;RPR=30;RUN=1;SAF=30;SAP=68.1545;SAR=0;SRF=45;SRP=100.727;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:36:21,15:21:817:15:599:-43.4095,0,-62.9948 0/1:26:15,11:15:582:11:420:-30.3167,0,-44.8912 0/1:13:9,4:9:362:4:164:-11.2365,0,-29.0308 dDocent_Contig_11567 40 . C T 35.4985 . AB=0.142857;ABP=26.2761;AC=2;AF=0.333333;AN=6;AO=3;CIGAR=1X;DP=30;DPB=30;DPRA=1.16667;EPP=9.52472;EPPR=61.6401;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=123;QR=1083;RO=27;RPL=0;RPP=9.52472;RPPR=61.6401;RPR=3;RUN=1;SAF=3;SAP=9.52472;SAR=0;SRF=27;SRP=61.6401;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:13:12,1:12:486:1:41:-0.181177,0,-40.1777 0/1:8:6,2:6:238:2:82:-5.37144,0,-19.3835 0/0:9:9,0:9:359:0:0:0,-2.70927,-32.6715 dDocent_Contig_11568 7 . C T 389.021 . AB=0.184211;ABP=35.9253;AC=0;AF=0;AN=6;AO=7;CIGAR=1X2M2X;DP=43;DPB=43;DPRA=0;EPP=18.2106;EPPR=48.6112;GTI=0;LEN=1;MEANALT=2;MQM=27.7143;MQMR=60;NS=3;NUMALT=2;ODDS=0;PAIRED=0.142857;PAIREDR=0.761905;PAO=0;PQA=0;PQR=0;PRO=0;QA=259;QR=807;RO=21;RPL=0;RPP=18.2106;RPPR=48.6112;RPR=7;RUN=1;SAF=7;SAP=18.2106;SAR=0;SRF=21;SRP=48.6112;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|0:26:14,5,7:14:537:5,7:181,285:-19.3821,-13.509,-56.0652,0,-34.0522,-42.0613 0|0:5:1,0,4:1:37:0,4:0,158:-13.0951,-13.3962,-16.4182,0,-3.3968,-2.19268 0|0:12:6,2,4:6:233:2,4:78,164:-11.8636,-10.5707,-29.1017,0,-16.1588,-18.0758 dDocent_Contig_11569 109 . C T 1408.51 . AB=0.471831;ABP=3.98899;AC=3;AF=0.5;AN=6;AO=67;CIGAR=1X;DP=142;DPB=142;DPRA=0;EPP=148.499;EPPR=165.871;GTI=0;LEN=1;MEANALT=1;MQM=59.3134;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=0.910448;PAIREDR=0.973333;PAO=0;PQA=0;PQR=0;PRO=0;QA=2092;QR=2255;RO=75;RPL=0;RPP=148.499;RPPR=165.871;RPR=67;RUN=1;SAF=0;SAP=148.499;SAR=67;SRF=0;SRP=165.871;SRR=75;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:87:44,43:44:1328:43:1340:-94.6908,0,-93.6072 0/1:14:5,9:5:159:9:280:-21.2408,0,-10.4098 0/1:41:26,15:26:768:15:472:-30.4419,0,-57.0581 dDocent_Contig_11570 144 . C T 672.368 . AB=0.166667;ABP=78.288;AC=3;AF=0.5;AN=6;AO=13;CIGAR=6M1X1M;DP=78;DPB=81.875;DPRA=0;EPP=31.2394;EPPR=74.6689;GTI=0;LEN=1;MEANALT=2.33333;MQM=60;MQMR=60;NS=3;NUMALT=2;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=510;QR=1114;RO=33;RPL=0;RPP=31.2394;RPPR=74.6689;RPR=13;RUN=1;SAF=0;SAP=31.2394;SAR=13;SRF=0;SRP=74.6689;SRR=33;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|1:41:23,10,8:23:788:10,8:318,306:-18.6044,0,-60.9322,-0.401856,-38.8348,-61.9829 0|1:8:5,1,2:5:155:1,2:35,81:-5.21081,-3.89153,-15.9647,0,-9.55959,-11.8069 0|1:29:5,20,3:5:171:20,3:629,123:-48.8905,0,-7.83117,-40.2316,-3.67689,-53.2133 dDocent_Contig_11571 12 . T C 171.266 . AB=0.296296;ABP=12.7417;AC=1;AF=0.166667;AN=6;AO=12;CIGAR=1X;DP=111;DPB=111;DPRA=5.05;EPP=29.068;EPPR=217.986;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=458;QR=3921;RO=99;RPL=0;RPP=29.068;RPPR=217.986;RPR=12;RUN=1;SAF=12;SAP=29.068;SAR=0;SRF=99;SRP=217.986;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:74:70,4:70:2771:4:161:0,-7.40094,-234.641 0/0:10:10,0:10:399:0:0:0,-3.0103,-36.2695 0/1:27:19,8:19:751:8:297:-18.9505,0,-59.7868 dDocent_Contig_11572 56 . G A 719.044 . AB=0.391304;ABP=10.0912;AC=3;AF=0.5;AN=6;AO=27;CIGAR=1X;DP=69;DPB=69;DPRA=0;EPP=61.6401;EPPR=94.2121;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=1079;QR=1639;RO=42;RPL=27;RPP=61.6401;RPPR=94.2121;RPR=0;RUN=1;SAF=27;SAP=61.6401;SAR=0;SRF=42;SRP=94.2121;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:35:24,11:24:932:11:440:-29.4196,0,-73.6414 0/1:11:3,8:3:123:8:319:-25.7638,0,-8.15346 0/1:23:15,8:15:584:8:320:-22.244,0,-45.9726 dDocent_Contig_11573 95 . C T 140.521 . AB=0.368421;ABP=5.8675;AC=1;AF=0.166667;AN=6;AO=8;CIGAR=1X;DP=36;DPB=36;DPRA=17.5;EPP=20.3821;EPPR=63.8115;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=269;QR=972;RO=28;RPL=8;RPP=20.3821;RPPR=63.8115;RPR=0;RUN=1;SAF=8;SAP=20.3821;SAR=0;SRF=28;SRP=63.8115;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:19:12,7:12:418:7:233:-15.5741,0,-32.2343 0/0:1:1,0:1:35:0:0:0,-0.30103,-3.49863 0/0:16:15,1:15:519:1:36:0,-1.2182,-43.4403 dDocent_Contig_11574 8 . A C 71.5149 . AB=0.142857;ABP=18.5208;AC=3;AF=0.5;AN=6;AO=4;CIGAR=1X;DP=21;DPB=21;DPRA=1.6;EPP=11.6962;EPPR=39.9253;GTI=0;LEN=1;MEANALT=1;MQM=35.75;MQMR=58.3529;NS=3;NUMALT=1;ODDS=0;PAIRED=0;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=153;QR=649;RO=17;RPL=0;RPP=11.6962;RPPR=39.9253;RPR=4;RUN=1;SAF=4;SAP=11.6962;SAR=0;SRF=17;SRP=39.9253;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:14:12,2:12:465:2:77:-2.29641,0,-37.8632 1/1:2:0,2:0:0:2:76:-6.31,-0.60206,0 0/0:5:5,0:5:184:0:0:0,-1.50515,-16.9171 dDocent_Contig_11575 7 . C A 83.9492 . AB=0.16;ABP=53.2147;AC=3;AF=0.5;AN=6;AO=8;CIGAR=1X;DP=50;DPB=50;DPRA=0;EPP=20.3821;EPPR=94.2121;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=56.381;NS=3;NUMALT=1;ODDS=0;PAIRED=0.625;PAIREDR=0.880952;PAO=0;PQA=0;PQR=0;PRO=0;QA=307;QR=1612;RO=42;RPL=0;RPP=20.3821;RPPR=94.2121;RPR=8;RUN=1;SAF=8;SAP=20.3821;SAR=0;SRF=42;SRP=94.2121;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:18:16,2:16:608:2:77:-1.8906,0,-49.6347 0/1:22:19,3:19:735:3:115:-4.10223,0,-56.3047 0/1:10:7,3:7:269:3:115:-7.71459,0,-21.0664 dDocent_Contig_11578 24 . G A 391.038 . AB=0.0705882;ABP=139.149;AC=0;AF=0;AN=6;AO=6;CIGAR=1M1D1X3M1X3M;DP=95;DPB=95.7;DPRA=0;EPP=16.0391;EPPR=102.898;GTI=0;LEN=1;MEANALT=7;MQM=60;MQMR=60;NS=3;NUMALT=6;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=233;QR=1785;RO=46;RPL=0;RPP=16.0391;RPPR=102.898;RPR=6;RUN=1;SAF=6;SAP=16.0391;SAR=0;SRF=46;SRP=102.898;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|0:61:28,4,12,5,0,4,0:28:1090:4,12,5,0,4,0:153,474,201,0,151,0:-30.5872,-26.4599,-114.846,0,-77.0425,-85.9854,-22.4472,-99.4844,-73.0312,-110.534,-39.016,-116.05,-89.5978,-112.04,-128.605,-26.7802,-103.815,-77.3623,-99.8041,-116.37,-115.166,-39.016,-116.05,-89.5978,-112.04,-128.605,-116.37,-128.605 0|0:10:4,0,0,2,3,0,0:4:153:0,0,2,3,0,0:0,0,72,114,0,0:-8.16319,-9.36731,-21.9309,-9.36731,-21.9309,-21.9309,-3.4956,-16.0609,-16.0609,-15.4588,0,-12.5776,-12.5776,-6.70736,-11.6745,-9.36731,-21.9309,-21.9309,-16.0609,-12.5776,-21.9309,-9.36731,-21.9309,-21.9309,-16.0609,-12.5776,-21.9309,-21.9309 0|0:24:14,2,1,3,0,0,3:14:542:2,1,3,0,0,3:80,40,122,0,0,113:-5.85463,-3.47715,-47.3932,-6.77319,-44.6996,-50.9898,0,-37.9292,-41.225,-43.6176,-10.069,-47.9953,-51.2908,-44.5207,-54.5864,-10.069,-47.9953,-51.2908,-44.5207,-54.5864,-54.5864,-0.815951,-38.7371,-42.0326,-35.2624,-45.3282,-45.3282,-44.4251 dDocent_Contig_11579 38 . G C 221.177 . AB=0.346154;ABP=8.35546;AC=1;AF=0.166667;AN=6;AO=9;CIGAR=1X;DP=57;DPB=57;DPRA=1.67742;EPP=22.5536;EPPR=107.241;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=349;QR=1800;RO=48;RPL=0;RPP=22.5536;RPPR=107.241;RPR=9;RUN=1;SAF=9;SAP=22.5536;SAR=0;SRF=48;SRP=107.241;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:25:25,0:25:941:0:0:0,-7.52575,-84.9956 0/1:26:17,9:17:623:9:349:-23.9416,0,-48.5696 0/0:6:6,0:6:236:0:0:0,-1.80618,-21.6123 dDocent_Contig_11580 28 . T C 1600.71 . AB=0.630952;ABP=15.5221;AC=3;AF=0.5;AN=6;AO=53;CIGAR=1X;DP=84;DPB=84;DPRA=0;EPP=118.098;EPPR=70.3259;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=2110;QR=1261;RO=31;RPL=0;RPP=118.098;RPPR=70.3259;RPR=53;RUN=1;SAF=53;SAP=118.098;SAR=0;SRF=31;SRP=70.3259;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:68:23,45:23:936:45:1787:-140.568,0,-64.0707 0/1:10:6,4:6:244:4:162:-11.9564,0,-19.3285 0/1:6:2,4:2:81:4:161:-13.0687,0,-5.87955 dDocent_Contig_11581 83 . C T 193.605 . AB=0.232143;ABP=37.909;AC=2;AF=0.333333;AN=6;AO=13;CIGAR=1X;DP=64;DPB=64;DPRA=3.5;EPP=31.2394;EPPR=113.755;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=423;QR=1769;RO=51;RPL=13;RPP=31.2394;RPPR=113.755;RPR=0;RUN=1;SAF=13;SAP=31.2394;SAR=0;SRF=51;SRP=113.755;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:38:34,4:34:1177:4:131:-0.67487,0,-94.7975 0/0:8:8,0:8:279:0:0:0,-2.40824,-25.449 0/1:18:9,9:9:313:9:292:-21.1777,0,-23.0885 dDocent_Contig_11582 98 . N G 128.53 . AB=0;ABP=0;AC=2;AF=1;AN=2;AO=4;CIGAR=1X;DP=4;DPB=4;DPRA=0;EPP=11.6962;EPPR=0;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=0;NS=1;NUMALT=1;ODDS=7.37776;PAIRED=1;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=139;QR=0;RO=0;RPL=4;RPP=11.6962;RPPR=0;RPR=0;RUN=1;SAF=4;SAP=11.6962;SAR=0;SRF=0;SRP=0;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL ./.:.:.:.:.:.:.:. 1/1:4:0,4:0:0:4:139:-12.8527,-1.20412,0 ./.:.:.:.:.:.:.:. dDocent_Contig_11583 5 . T A 143.227 . AB=0.388889;ABP=4.9405;AC=1;AF=0.166667;AN=6;AO=12;CIGAR=6I3M1X;DP=196;DPB=214;DPRA=0;EPP=29.068;EPPR=402.561;GTI=0;LEN=1;MEANALT=1;MQM=40;MQMR=43.1304;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=415;QR=6776;RO=184;RPL=0;RPP=29.068;RPPR=402.561;RPR=12;RUN=1;SAF=12;SAP=29.068;SAR=0;SRF=184;SRP=402.561;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|0:127:126,1:126:4637:1:35:0,-34.8501,-364.834 0|1:18:11,7:11:407:7:244:-16.1466,0,-18.0698 0|0:51:47,4:47:1732:4:136:0,-3.15118,-98.7239 dDocent_Contig_11584 40 . A G 162.689 . AB=0.35;ABP=6.91895;AC=1;AF=0.166667;AN=6;AO=7;CIGAR=2X;DP=54;DPB=54;DPRA=1.17647;EPP=18.2106;EPPR=105.07;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=264;QR=1851;RO=47;RPL=0;RPP=18.2106;RPPR=105.07;RPR=7;RUN=1;SAF=7;SAP=18.2106;SAR=0;SRF=47;SRP=105.07;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|0:21:21,0:21:832:0:0:0,-6.32163,-75.1958 0|1:20:13,7:13:506:7:264:-18.0928,0,-39.8664 0|0:13:13,0:13:513:0:0:0,-3.91339,-46.5176 dDocent_Contig_11585 87 . G A 567.13 . AB=0.571429;ABP=4.87156;AC=3;AF=0.5;AN=6;AO=24;CIGAR=1X;DP=42;DPB=42;DPRA=0;EPP=55.1256;EPPR=42.0968;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=3.46945e-18;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=814;QR=607;RO=18;RPL=24;RPP=55.1256;RPPR=42.0968;RPR=0;RUN=1;SAF=24;SAP=55.1256;SAR=0;SRF=18;SRP=42.0968;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:16:7,9:7:237:9:311:-23.5088,0,-16.845 0/1:5:1,4:1:29:4:127:-10.2389,0,-1.39451 0/1:21:10,11:10:341:11:376:-27.8483,0,-24.6987 dDocent_Contig_11586 14 . G A 3862.62 . AB=0.0642202;ABP=362.598;AC=0;AF=0;AN=6;AO=14;CIGAR=1X1M1X1M1X1M1X1M;DP=218;DPB=218.625;DPRA=0;EPP=33.4109;EPPR=31.2394;GTI=0;LEN=1;MEANALT=7.33333;MQM=60;MQMR=60;NS=3;NUMALT=7;ODDS=0;PAIRED=0;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=547;QR=511;RO=13;RPL=0;RPP=33.4109;RPPR=31.2394;RPR=14;RUN=1;SAF=14;SAP=33.4109;SAR=0;SRF=13;SRP=31.2394;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|0:97:0,7,6,0,43,6,5,30:0:0:7,6,0,43,6,5,30:272,235,0,1693,235,181,1207:-238.747,-216.397,-214.29,-219.424,-197.074,-217.618,-238.747,-216.397,-219.424,-238.747,-99.4778,-77.1282,-80.1545,-99.4778,-86.5335,-219.425,-197.075,-200.101,-219.425,-80.1553,-217.619,-223.977,-201.627,-204.653,-223.977,-84.7085,-204.654,-222.471,-139.276,-116.926,-119.952,-139.276,0,-119.953,-124.506,-130.245 0|0:39:7,5,2,4,7,4,0,9:7:273:5,2,4,7,4,0,9:198,80,163,278,162,0,360:-27.9973,-13.8088,-34.7396,-23.5146,-29.6547,-45.3488,-16.6561,-22.7962,-32.5024,-37.8884,-7.21895,-13.3588,-23.0647,-16.2061,-27.5476,-16.7455,-22.8856,-32.5917,-25.7331,-16.2955,-37.9777,-30.1045,-36.2448,-45.9508,-39.0925,-29.6548,-39.1818,-52.5409,-0.450356,-6.59008,-16.2961,-9.43737,0,-9.52675,-22.8862,-20.177 0|0:82:6,2,8,0,34,6,9,11:6:238:2,8,0,34,6,9,11:77,320,0,1344,229,348,435:-124.991,-120.476,-139.466,-100.436,-113.707,-117.62,-126.797,-140.068,-120.029,-146.39,-16.2041,-29.475,-9.43486,-35.7968,-25.5618,-108.012,-121.282,-101.243,-127.604,-17.0119,-125.798,-98.2181,-111.489,-91.4493,-117.81,-7.21798,-99.0251,-115.101,-91.0011,-104.272,-84.2322,-110.594,0,-91.8082,-82.0143,-107.282 dDocent_Contig_11587 16 . C T 2074.08 . AB=0.779221;ABP=55.1538;AC=4;AF=0.666667;AN=6;AO=77;CIGAR=1X;DP=96;DPB=96;DPRA=0;EPP=170.214;EPPR=44.2683;GTI=0;LEN=1;MEANALT=1;MQM=45.5974;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=0.480519;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=3000;QR=741;RO=19;RPL=0;RPP=170.214;RPPR=44.2683;RPR=77;RUN=1;SAF=77;SAP=170.214;SAR=0;SRF=19;SRP=44.2683;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:51:10,41:10:405:41:1605:-109.712,0,-21.4579 1/1:19:2,17:2:55:17:675:-48.7994,-0.496241,0 0/1:26:7,19:7:281:19:720:-52.4194,0,-17.8352 dDocent_Contig_11588 19 . C T 115.488 . AB=0;ABP=0;AC=2;AF=0.333333;AN=6;AO=4;CIGAR=1X;DP=39;DPB=39;DPRA=1;EPP=11.6962;EPPR=79.0118;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=2.1684e-19;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=132;QR=1424;RO=35;RPL=0;RPP=11.6962;RPPR=79.0118;RPR=4;RUN=1;SAF=4;SAP=11.6962;SAR=0;SRF=35;SRP=79.0118;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:23:22,1:22:897:1:10:0,-5.92369,-80.0344 1/1:3:0,3:0:0:3:122:-11.3725,-0.90309,0 0/0:13:13,0:13:527:0:0:0,-3.91339,-47.7757 dDocent_Contig_11589 1 . N G 86.7766 . AB=0;ABP=0;AC=2;AF=1;AN=2;AO=3;CIGAR=1X;DP=3;DPB=3;DPRA=0;EPP=9.52472;EPPR=0;GTI=0;LEN=1;MEANALT=1;MQM=58;MQMR=0;NS=1;NUMALT=1;ODDS=6.68461;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=93;QR=0;RO=0;RPL=0;RPP=9.52472;RPPR=0;RPR=3;RUN=1;SAF=0;SAP=9.52472;SAR=3;SRF=0;SRP=0;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 1/1:3:0,3:0:0:3:93:-8.67712,-0.90309,0 ./.:.:.:.:.:.:.:. ./.:.:.:.:.:.:.:. dDocent_Contig_11591 12 . G C 156.159 . AB=0.0876289;ABP=289.555;AC=3;AF=0.5;AN=6;AO=17;CIGAR=1X4M;DP=194;DPB=194;DPRA=0;EPP=39.9253;EPPR=359.132;GTI=0;LEN=1;MEANALT=1.66667;MQM=60;MQMR=60;NS=3;NUMALT=2;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=687;QR=6378;RO=164;RPL=0;RPP=39.9253;RPPR=359.132;RPR=17;RUN=1;SAF=17;SAP=39.9253;SAR=0;SRF=164;SRP=359.132;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|1:117:101,5,11:101:3935:5,11:200,445:-6.28828,-20.2185,-342.112,0,-306.926,-320.09 0|1:24:22,0,2:22:848:0,2:0,82:-0.554958,-7.17762,-76.7879,0,-70.0177,-69.4156 0|1:53:41,8,4:41:1595:8,4:307,160:-12.8453,0,-128.659,-12.0024,-117.887,-141.88 dDocent_Contig_11592 40 . G A 33.7821 . AB=0.285714;ABP=5.80219;AC=1;AF=0.166667;AN=6;AO=2;CIGAR=1X;DP=31;DPB=31;DPRA=0.583333;EPP=7.35324;EPPR=65.983;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=77;QR=1126;RO=29;RPL=0;RPP=7.35324;RPPR=65.983;RPR=2;RUN=1;SAF=2;SAP=7.35324;SAR=0;SRF=29;SRP=65.983;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:15:15,0:15:589:0:0:0,-4.51545,-53.3469 0/1:7:5,2:5:182:2:77:-5.20193,0,-14.6242 0/0:9:9,0:9:355:0:0:0,-2.70927,-32.3102 dDocent_Contig_11593 125 . G A 148.008 . AB=0.5;ABP=3.0103;AC=1;AF=0.166667;AN=6;AO=7;CIGAR=1X;DP=29;DPB=29;DPRA=1.86667;EPP=18.2106;EPPR=50.7827;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=228;QR=694;RO=22;RPL=0;RPP=18.2106;RPPR=50.7827;RPR=7;RUN=1;SAF=0;SAP=18.2106;SAR=7;SRF=0;SRP=50.7827;SRR=22;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:9:9,0:9:262:0:0:0,-2.70927,-23.865 0/0:6:6,0:6:201:0:0:0,-1.80618,-18.4192 0/1:14:7,7:7:231:7:228:-16.6246,0,-16.8984 dDocent_Contig_11595 12 . T C 166.291 . AB=0.388889;ABP=4.9405;AC=1;AF=0.166667;AN=6;AO=7;CIGAR=1X2M2X;DP=32;DPB=32;DPRA=2.57143;EPP=18.2106;EPPR=57.2971;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=258;QR=960;RO=25;RPL=0;RPP=18.2106;RPPR=57.2971;RPR=7;RUN=1;SAF=7;SAP=18.2106;SAR=0;SRF=25;SRP=57.2971;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|1:18:11,7:11:423:7:258:-18.1519,0,-33.0028 0|0:10:10,0:10:390:0:0:0,-3.0103,-35.4574 0|0:4:4,0:4:147:0:0:0,-1.20412,-13.5886 dDocent_Contig_11596 30 . T C 6507.28 . AB=0.189734;ABP=915.246;AC=1;AF=0.166667;AN=6;AO=207;CIGAR=1X1M1X;DP=1091;DPB=1091;DPRA=0;EPP=452.505;EPPR=1353.67;GTI=0;LEN=1;MEANALT=5.33333;MQM=59.3671;MQMR=59.8457;NS=3;NUMALT=2;ODDS=0;PAIRED=0.990338;PAIREDR=0.998392;PAO=0;PQA=0;PQR=0;PRO=0;QA=8225;QR=24613;RO=622;RPL=0;RPP=452.505;RPPR=1353.67;RPR=207;RUN=1;SAF=207;SAP=452.505;SAR=0;SRF=622;SRP=1353.67;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|0:429:260,69,93:260:10317:69,93:2732,3703:-226.636,-81.1628,-908.63,0,-624.498,-820.245 0|0:239:140,35,61:140:5545:35,61:1396,2449:-159.651,-88.8996,-534.719,0,-343.463,-437.998 0|1:423:222,103,90:222:8751:103,90:4097,3562:-269.964,0,-688.919,-43.6568,-426.789,-736.488 dDocent_Contig_11597 58 . C T 716.303 . AB=0.436364;ABP=4.94488;AC=3;AF=0.5;AN=6;AO=24;CIGAR=8M1X4M;DP=55;DPB=50.7692;DPRA=0;EPP=55.1256;EPPR=52.9542;GTI=0;LEN=1;MEANALT=2.66667;MQM=60;MQMR=60;NS=3;NUMALT=2;ODDS=0;PAIRED=0.0833333;PAIREDR=0.73913;PAO=0;PQA=0;PQR=0;PRO=0;QA=956;QR=901;RO=23;RPL=24;RPP=55.1256;RPPR=52.9542;RPR=0;RUN=1;SAF=24;SAP=55.1256;SAR=0;SRF=23;SRP=52.9542;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|1:32:13,3,16:13:513:3,16:111,636:-48.4701,-43.3074,-84.6141,0,-33.1551,-37.4144 0|1:9:0,2,5:0:0:2,5:66,198:-21.6229,-16.3009,-15.6988,-5.30634,0,-3.80119 0|1:14:10,0,3:10:388:0,3:0,122:-7.05789,-10.0682,-41.9355,0,-31.8685,-30.9654 dDocent_Contig_11598 16 . T C 104.172 . AB=0.227273;ABP=17.2236;AC=1;AF=0.166667;AN=6;AO=6;CIGAR=1X;DP=44;DPB=44;DPRA=2.25;EPP=16.0391;EPPR=85.5263;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=242;QR=1534;RO=38;RPL=0;RPP=16.0391;RPPR=85.5263;RPR=6;RUN=1;SAF=6;SAP=16.0391;SAR=0;SRF=38;SRP=85.5263;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:22:17,5:17:689:5:202:-11.9392,0,-55.7162 0/0:8:8,0:8:322:0:0:0,-2.40824,-29.3481 0/0:14:13,1:13:523:1:40:0,-0.218741,-43.4213 dDocent_Contig_11600 25 . C A 80.6927 . AB=0;ABP=0;AC=2;AF=0.333333;AN=6;AO=2;CIGAR=1X;DP=24;DPB=24;DPRA=0.181818;EPP=7.35324;EPPR=50.7827;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=80;QR=874;RO=22;RPL=0;RPP=7.35324;RPPR=50.7827;RPR=2;RUN=1;SAF=2;SAP=7.35324;SAR=0;SRF=22;SRP=50.7827;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 1/1:2:0,2:0:0:2:80:-7.59179,-0.60206,0 0/0:11:11,0:11:434:0:0:0,-3.31133,-39.414 0/0:11:11,0:11:440:0:0:0,-3.31133,-39.9566 dDocent_Contig_11601 18 . A T 307.077 . AB=0.154362;ABP=157.622;AC=2;AF=0.333333;AN=6;AO=28;CIGAR=1X;DP=238;DPB=238;DPRA=0;EPP=63.8115;EPPR=450.375;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=58.6333;NS=3;NUMALT=1;ODDS=0;PAIRED=0.285714;PAIREDR=0.595238;PAO=0;PQA=0;PQR=0;PRO=0;QA=1072;QR=8165;RO=210;RPL=0;RPP=63.8115;RPPR=459.02;RPR=28;RUN=1;SAF=28;SAP=63.8115;SAR=0;SRF=209;SRP=450.375;SRR=1;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:97:83,14:83:3216:14:531:-18.9315,0,-259.133 0/1:52:43,9:43:1666:9:340:-15.2991,0,-133.169 0/0:89:84,5:84:3283:5:201:0,-8.32078,-272.04 dDocent_Contig_11603 66 . T A 993.767 . AB=0.0588235;ABP=60.4905;AC=0;AF=0;AN=6;AO=2;CIGAR=1X2M1X4M;DP=82;DPB=82;DPRA=0;EPP=7.35324;EPPR=68.1545;GTI=0;LEN=1;MEANALT=3;MQM=60;MQMR=60;NS=3;NUMALT=3;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=32;QR=939;RO=30;RPL=2;RPP=7.35324;RPPR=68.1545;RPR=0;RUN=1;SAF=2;SAP=7.35324;SAR=0;SRF=30;SRP=68.1545;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|0:34:11,2,4,17:11:353:2,4,17:32,132,542:-40.3694,-41.4168,-69.2662,-33.0034,-59.1945,-60.2576,0,-26.2236,-17.8018,-23.3647 0|0:15:6,0,3,6:6:175:0,3,6:0,97,204:-14.7529,-16.559,-30.483,-8.73982,-22.6567,-21.7536,0,-13.9199,-6.08462,-12.1138 0|0:33:13,0,0,20:13:411:0,0,20:0,0,660:-49.7773,-53.6907,-86.7532,-53.6907,-86.7532,-86.7532,0,-33.3841,-33.3841,-27.3635 dDocent_Contig_11604 18 . A T 676.623 . AB=0.161184;ABP=306.131;AC=2;AF=0.333333;AN=6;AO=58;CIGAR=1X;DP=469;DPB=469;DPRA=0;EPP=128.956;EPPR=843.715;GTI=0;LEN=1;MEANALT=2.33333;MQM=49.1724;MQMR=56.8263;NS=3;NUMALT=1;ODDS=0;PAIRED=0.465517;PAIREDR=0.684864;PAO=0;PQA=0;PQR=0;PRO=0;QA=2275;QR=16037;RO=403;RPL=0;RPP=128.956;RPPR=878.114;RPR=58;RUN=1;SAF=58;SAP=128.956;SAR=0;SRF=399;SRP=843.715;SRR=4;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:190:167,23:167:6634:23:875:-16.0723,0,-507.198 0/1:114:83,26:83:3281:26:1034:-55.1129,0,-251.741 0/0:165:153,9:153:6122:9:366:0,-19.4372,-502.08 dDocent_Contig_11605 114 . A G 46.7156 . AB=0.15;ABP=45.5712;AC=1;AF=0.166667;AN=6;AO=6;CIGAR=1X;DP=50;DPB=50;DPRA=8;EPP=16.0391;EPPR=98.5551;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=199;QR=1504;RO=44;RPL=0;RPP=16.0391;RPPR=98.5551;RPR=6;RUN=1;SAF=0;SAP=16.0391;SAR=6;SRF=0;SRP=98.5551;SRR=44;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:40:34,6:34:1168:6:199:-6.19432,0,-93.3838 0/0:6:6,0:6:196:0:0:0,-1.80618,-17.9611 0/0:4:4,0:4:140:0:0:0,-1.20412,-12.9449 dDocent_Contig_11606 15 . G A 47.4254 . AB=0.2;ABP=14.7363;AC=1;AF=0.166667;AN=6;AO=3;CIGAR=1X1M;DP=59;DPB=59;DPRA=0.681818;EPP=9.52472;EPPR=113.755;GTI=0;LEN=1;MEANALT=2;MQM=60;MQMR=60;NS=3;NUMALT=3;ODDS=0;PAIRED=1;PAIREDR=0.490196;PAO=0;PQA=0;PQR=0;PRO=0;QA=120;QR=1989;RO=51;RPL=0;RPP=9.52472;RPPR=113.755;RPR=3;RUN=1;SAF=3;SAP=9.52472;SAR=0;SRF=51;SRP=113.755;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|0:23:21,2,0,0:21:806:2,0,0:79,0,0:0,-2.57293,-68.4996,-6.32163,-69.1016,-72.6079,-6.32163,-69.1016,-72.6079,-72.6079 0|0:21:19,0,2,0:19:749:0,2,0:0,62,0:0,-5.71957,-67.4166,-0.440029,-62.4546,-61.8526,-5.71957,-67.4166,-62.4546,-67.4166 0|1:15:11,0,1,3:11:434:0,1,3:0,41,120:-6.56591,-9.87724,-45.5799,-6.49068,-42.1948,-41.8938,0,-35.6944,-32.309,-34.7913 dDocent_Contig_11607 13 . C A 7768.93 . AB=0.0588235;ABP=261.671;AC=0;AF=0;AN=6;AO=9;CIGAR=8M1X1M;DP=427;DPB=338.8;DPRA=0;EPP=22.5536;EPPR=270.101;GTI=0;LEN=1;MEANALT=4;MQM=60;MQMR=60;NS=3;NUMALT=2;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=355;QR=4744;RO=123;RPL=0;RPP=22.5536;RPPR=270.101;RPR=9;RUN=1;SAF=9;SAP=22.5536;SAR=0;SRF=123;SRP=270.101;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|0:274:66,203,0:66:2561:203,0:7227,0:-568.992,0,-149.326,-588.86,-210.435,-799.287 0|0:43:14,25,2:14:535:25,2:878,78:-67.2141,0,-36.3711,-65.0149,-37.4847,-108.32 0|0:110:43,56,7:43:1648:56,7:1957,277:-146.211,0,-118.385,-136.355,-112.446,-269.51 dDocent_Contig_11608 16 . C T 123.699 . AB=0.179487;ABP=37.8095;AC=1;AF=0.166667;AN=6;AO=7;CIGAR=1X;DP=100;DPB=100;DPRA=1.27869;EPP=18.2106;EPPR=204.957;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=284;QR=3702;RO=93;RPL=0;RPP=18.2106;RPPR=204.957;RPR=7;RUN=1;SAF=7;SAP=18.2106;SAR=0;SRF=93;SRP=204.957;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:52:52,0:52:2058:0:0:0,-15.6536,-185.414 0/0:9:9,0:9:365:0:0:0,-2.70927,-33.2149 0/1:39:32,7:32:1279:7:284:-14.1938,0,-103.638 dDocent_Contig_11610 20 . T C 31.536 . AB=0.2;ABP=10.8276;AC=1;AF=0.166667;AN=6;AO=2;CIGAR=1X;DP=21;DPB=21;DPRA=1.81818;EPP=7.35324;EPPR=44.2683;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=0;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=81;QR=763;RO=19;RPL=0;RPP=7.35324;RPPR=44.2683;RPR=2;RUN=1;SAF=2;SAP=7.35324;SAR=0;SRF=19;SRP=44.2683;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:10:8,2:8:323:2:81:-4.67543,0,-26.4283 0/0:10:10,0:10:401:0:0:0,-3.0103,-36.4488 0/0:1:1,0:1:39:0:0:0,-0.30103,-3.89656 dDocent_Contig_11611 15 . A C 191.036 . AB=0.257143;ABP=20.9405;AC=2;AF=0.333333;AN=6;AO=9;CIGAR=1X;DP=53;DPB=53;DPRA=0.972222;EPP=22.5536;EPPR=98.5551;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=360;QR=1689;RO=44;RPL=0;RPP=22.5536;RPPR=98.5551;RPR=9;RUN=1;SAF=9;SAP=22.5536;SAR=0;SRF=44;SRP=98.5551;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:18:18,0:18:692:0:0:0,-5.41854,-62.6011 0/1:7:3,4:3:122:4:162:-12.8595,0,-9.26528 0/1:28:23,5:23:875:5:198:-9.76693,0,-70.6157 dDocent_Contig_11613 31 . C T 87.3414 . AB=0.153846;ABP=57.1301;AC=2;AF=0.333333;AN=6;AO=8;CIGAR=1X;DP=66;DPB=66;DPRA=1.85714;EPP=20.3821;EPPR=128.956;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=0.375;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=303;QR=2334;RO=58;RPL=0;RPP=20.3821;RPPR=128.956;RPR=8;RUN=1;SAF=8;SAP=20.3821;SAR=0;SRF=58;SRP=128.956;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:41:37,4:37:1485:4:154:-1.88919,0,-121.551 0/1:11:7,4:7:275:4:149:-10.4583,0,-21.8041 0/0:14:14,0:14:574:0:0:0,-4.21442,-52.001 dDocent_Contig_11614 87 . A T 166.102 . AB=0.222222;ABP=39.2015;AC=2;AF=0.333333;AN=6;AO=12;CIGAR=1X;DP=55;DPB=55;DPRA=27;EPP=29.068;EPPR=96.3836;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=3.46945e-18;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=385;QR=1365;RO=43;RPL=12;RPP=29.068;RPPR=96.3836;RPR=0;RUN=1;SAF=12;SAP=29.068;SAR=0;SRF=43;SRP=96.3836;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:35:25,10:25:829:10:315:-18.1189,0,-64.3826 0/1:19:17,2:17:516:2:70:-0.927826,0,-41.0081 0/0:1:1,0:1:20:0:0:0,-0.30103,-1.99996 dDocent_Contig_11615 109 . A G 185.87 . AB=0.305556;ABP=14.8328;AC=2;AF=0.333333;AN=6;AO=11;CIGAR=1X;DP=40;DPB=40;DPRA=4.5;EPP=26.8965;EPPR=65.983;GTI=0;LEN=1;MEANALT=1;MQM=51.3636;MQMR=60;NS=3;NUMALT=1;ODDS=3.46945e-18;PAIRED=0.0909091;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=374;QR=973;RO=29;RPL=0;RPP=26.8965;RPPR=65.983;RPR=11;RUN=1;SAF=0;SAP=26.8965;SAR=11;SRF=0;SRP=65.983;SRR=29;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:24:19,5:19:624:5:174:-8.77196,0,-49.2453 0/1:12:6,6:6:209:6:200:-13.3378,0,-15.5387 0/0:4:4,0:4:140:0:0:0,-1.20412,-12.9449 dDocent_Contig_11616 37 . T C 287.696 . AB=0.186813;ABP=80.539;AC=3;AF=0.5;AN=6;AO=17;CIGAR=1X;DP=91;DPB=91;DPRA=0;EPP=39.9253;EPPR=163.699;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=673;QR=2991;RO=74;RPL=0;RPP=39.9253;RPPR=163.699;RPR=17;RUN=1;SAF=17;SAP=39.9253;SAR=0;SRF=74;SRP=163.699;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:39:32,7:32:1294:7:285:-14.2842,0,-104.984 0/1:29:24,5:24:972:5:193:-9.00967,0,-79.0471 0/1:23:18,5:18:725:5:195:-10.9986,0,-58.6471 dDocent_Contig_11618 69 . A C 138.286 . AB=0.176471;ABP=49.3776;AC=2;AF=0.333333;AN=6;AO=9;CIGAR=1X;DP=59;DPB=59;DPRA=3.1875;EPP=22.5536;EPPR=111.584;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=355;QR=1940;RO=50;RPL=9;RPP=22.5536;RPPR=111.584;RPR=0;RUN=1;SAF=9;SAP=22.5536;SAR=0;SRF=50;SRP=111.584;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:23:18,5:18:709:5:201:-11.5468,0,-57.2133 0/0:8:8,0:8:321:0:0:0,-2.40824,-29.257 0/1:28:24,4:24:910:4:154:-5.80462,0,-73.7865 dDocent_Contig_11619 1 . N G 53.7597 . AB=0;ABP=0;AC=2;AF=1;AN=2;AO=2;CIGAR=1X;DP=2;DPB=2;DPRA=0;EPP=7.35324;EPPR=0;GTI=0;LEN=1;MEANALT=1;MQM=35;MQMR=0;NS=1;NUMALT=1;ODDS=5.99146;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=60;QR=0;RO=0;RPL=0;RPP=7.35324;RPPR=0;RPR=2;RUN=1;SAF=0;SAP=7.35324;SAR=2;SRF=0;SRP=0;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 1/1:2:0,2:0:0:2:60:-5.37488,-0.60206,0 ./.:.:.:.:.:.:.:. ./.:.:.:.:.:.:.:. dDocent_Contig_11620 31 . T A 4109.26 . AB=0.810606;ABP=113.624;AC=4;AF=0.666667;AN=6;AO=127;CIGAR=1X;DP=152;DPB=152;DPRA=0;EPP=278.787;EPPR=57.2971;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=0.984252;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=5039;QR=1006;RO=25;RPL=0;RPP=278.787;RPPR=57.2971;RPR=127;RUN=1;SAF=127;SAP=278.787;SAR=0;SRF=25;SRP=57.2971;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:63:18,45:18:725:45:1798:-143.072,0,-46.6109 1/1:20:0,20:0:0:20:779:-70.4227,-6.0206,0 0/1:69:7,62:7:281:62:2462:-200.954,0,-4.88999 dDocent_Contig_11621 11 . G T 165.198 . AB=0.155844;ABP=82.2267;AC=3;AF=0.5;AN=6;AO=12;CIGAR=1X;DP=77;DPB=77;DPRA=0;EPP=29.068;EPPR=144.156;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=488;QR=2603;RO=65;RPL=0;RPP=29.068;RPPR=144.156;RPR=12;RUN=1;SAF=12;SAP=29.068;SAR=0;SRF=65;SRP=144.156;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:33:26,7:26:1033:7:285:-16.0904,0,-83.3296 0/1:7:6,1:6:235:1:41:-1.98736,0,-19.4126 0/1:37:33,4:33:1335:4:162:-3.82885,0,-109.271 dDocent_Contig_11622 52 . C T 88.835 . AB=0.166667;ABP=37.7539;AC=1;AF=0.166667;AN=6;AO=6;CIGAR=1X;DP=50;DPB=50;DPRA=5.14286;EPP=16.0391;EPPR=98.5551;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=232;QR=1732;RO=44;RPL=6;RPP=16.0391;RPPR=98.5551;RPR=0;RUN=1;SAF=6;SAP=16.0391;SAR=0;SRF=44;SRP=98.5551;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:36:30,6:30:1199:6:232:-10.4062,0,-97.3526 0/0:3:3,0:3:102:0:0:0,-0.90309,-9.51604 0/0:11:11,0:11:431:0:0:0,-3.31133,-39.1387 dDocent_Contig_11623 82 . A G 68.2385 . AB=0;ABP=0;AC=2;AF=0.333333;AN=6;AO=2;CIGAR=1X;DP=26;DPB=26;DPRA=0.166667;EPP=7.35324;EPPR=55.1256;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=70;QR=811;RO=24;RPL=2;RPP=7.35324;RPPR=55.1256;RPR=0;RUN=1;SAF=2;SAP=7.35324;SAR=0;SRF=24;SRP=55.1256;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:15:15,0:15:508:0:0:0,-4.51545,-46.0431 0/0:9:9,0:9:303:0:0:0,-2.70927,-27.597 1/1:2:0,2:0:0:2:70:-6.6474,-0.60206,0 dDocent_Contig_11624 32 . C T 195.53 . AB=0.16092;ABP=89.8942;AC=3;AF=0.5;AN=6;AO=14;CIGAR=1X;DP=87;DPB=87;DPRA=0;EPP=33.4109;EPPR=161.528;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=557;QR=2907;RO=73;RPL=0;RPP=33.4109;RPPR=161.528;RPR=14;RUN=1;SAF=14;SAP=33.4109;SAR=0;SRF=73;SRP=161.528;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:49:41,8:41:1615:8:325:-14.8692,0,-130.839 0/1:11:8,3:8:323:3:113:-7.22469,0,-26.1273 0/1:27:24,3:24:969:3:119:-2.96669,0,-79.3821 dDocent_Contig_11625 7 . C T 150.617 . AB=0.17284;ABP=78.3148;AC=1;AF=0.166667;AN=6;AO=14;CIGAR=1X;DP=171;DPB=171;DPRA=1.8;EPP=33.4109;EPPR=343.931;GTI=0;LEN=1;MEANALT=1;MQM=34.6429;MQMR=48.8153;NS=3;NUMALT=1;ODDS=0;PAIRED=0;PAIREDR=0.178344;PAO=0;PQA=0;PQR=0;PRO=0;QA=539;QR=6007;RO=157;RPL=0;RPP=33.4109;RPPR=343.931;RPR=14;RUN=1;SAF=14;SAP=33.4109;SAR=0;SRF=157;SRP=343.931;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:81:67,14:67:2581:14:539:-16.5845,0,-195.425 0/0:29:29,0:29:1083:0:0:0,-8.72987,-93.3223 0/0:61:61,0:61:2343:0:0:0,-18.3628,-196.601 dDocent_Contig_11626 7 . C T 753.186 . AB=0.529412;ABP=3.3935;AC=2;AF=0.5;AN=4;AO=27;CIGAR=1X;DP=51;DPB=51;DPRA=0;EPP=61.6401;EPPR=55.1256;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=2;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=1025;QR=904;RO=24;RPL=0;RPP=61.6401;RPPR=55.1256;RPR=27;RUN=1;SAF=27;SAP=61.6401;SAR=0;SRF=24;SRP=55.1256;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:40:14,26:14:517:26:986:-77.0093,0,-34.8182 ./.:.:.:.:.:.:.:. 0/1:11:10,1:10:387:1:39:-0.585235,0,-31.8762 dDocent_Contig_11627 9 . C A 10001.7 . AB=0.111396;ABP=1027.44;AC=6;AF=1;AN=6;AO=87;CIGAR=1X14M;DP=781;DPB=803.933;DPRA=0;EPP=191.928;EPPR=33.4109;GTI=0;LEN=1;MEANALT=21.3333;MQM=60;MQMR=60;NS=3;NUMALT=8;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=3335;QR=543;RO=14;RPL=0;RPP=191.928;RPPR=33.4109;RPR=87;RUN=1;SAF=87;SAP=191.928;SAR=0;SRF=14;SRP=33.4109;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 1|1:442:8,41,18,0,52,147,39,28,44:8:312:41,18,0,52,147,39,28,44:1560,668,0,2020,5574,1523,1007,1689:-590.101,-466.787,-480.091,-538.396,-438.32,-558.624,-592.509,-492.433,-564.042,-618.156,-428.784,-328.708,-400.317,-454.43,-438.777,-138.08,-38.0038,-109.613,-163.727,0,-119.475,-467.308,-367.232,-438.841,-492.954,-329.229,-38.524,-481.214,-513.468,-413.392,-485.001,-539.114,-375.389,-84.6857,-413.913,-530.685,-453.868,-353.792,-425.401,-479.514,-315.789,-25.0842,-354.313,-400.473,-466.269 1|1:101:5,11,6,6,9,30,3,4,10:5:192:11,6,6,9,30,3,4,10:403,215,238,347,1141,117,152,384:-108.621,-77.8176,-90.267,-92.5944,-76.0466,-106.549,-90.5329,-73.9849,-88.7617,-104.488,-82.1709,-65.623,-80.3998,-78.3381,-95.2224,-16.5472,0,-14.7766,-12.7141,-4.35236,-23.2774,-100.508,-83.9604,-98.7372,-96.6757,-88.3137,-22.6901,-115.366,-97.6605,-81.1125,-95.8893,-93.8278,-85.4658,-19.8422,-103.803,-112.217,-78.6038,-62.0559,-76.8327,-74.771,-66.4091,-0.785003,-84.7467,-81.8987,-91.3544 1|1:238:1,29,15,0,21,66,32,10,33:1:39:29,15,0,21,66,32,10,33:1116,574,0,805,2530,1233,392,1262:-306.942,-216.617,-211.093,-260.143,-172.722,-258.833,-307.243,-219.823,-263.349,-310.449,-243.592,-156.171,-199.698,-246.798,-240.476,-100.351,-12.9293,-56.4558,-103.556,-39.9055,-83.6885,-206.004,-118.583,-162.11,-209.21,-145.559,-2.31681,-199.577,-275.293,-187.872,-231.398,-278.499,-214.848,-71.6058,-177.26,-275.489,-203.687,-116.266,-159.793,-206.893,-143.242,0,-105.654,-174.943,-196.959 dDocent_Contig_11628 107 . N C 92.3795 . AB=0;ABP=0;AC=2;AF=1;AN=2;AO=3;CIGAR=1X;DP=3;DPB=3;DPRA=0;EPP=9.52472;EPPR=0;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=0;NS=1;NUMALT=1;ODDS=6.68461;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=99;QR=0;RO=0;RPL=0;RPP=9.52472;RPPR=0;RPR=3;RUN=1;SAF=0;SAP=9.52472;SAR=3;SRF=0;SRP=0;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 1/1:3:0,3:0:0:3:99:-9.2374,-0.90309,0 ./.:.:.:.:.:.:.:. ./.:.:.:.:.:.:.:. dDocent_Contig_11629 124 . A G 33.9616 . AB=0.285714;ABP=5.80219;AC=1;AF=0.166667;AN=6;AO=2;CIGAR=1X;DP=16;DPB=16;DPRA=1.55556;EPP=7.35324;EPPR=33.4109;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=74;QR=498;RO=14;RPL=0;RPP=7.35324;RPPR=33.4109;RPR=2;RUN=1;SAF=0;SAP=7.35324;SAR=2;SRF=0;SRP=33.4109;SRR=14;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:7:5,2:5:176:2:74:-4.91867,0,-14.0776 0/0:6:6,0:6:213:0:0:0,-1.80618,-19.5154 0/0:3:3,0:3:109:0:0:0,-0.90309,-10.168 dDocent_Contig_11630 17 . T C 585.97 . AB=0.444444;ABP=3.73412;AC=4;AF=0.666667;AN=6;AO=19;CIGAR=1X;DP=34;DPB=34;DPRA=0;EPP=44.2683;EPPR=35.5824;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=768;QR=599;RO=15;RPL=0;RPP=44.2683;RPPR=35.5824;RPR=19;RUN=1;SAF=19;SAP=44.2683;SAR=0;SRF=15;SRP=35.5824;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:13:6,7:6:246:7:282:-21.839,0,-18.6067 0/1:14:9,5:9:353:5:201:-14.2565,0,-27.9136 1/1:7:0,7:0:0:7:285:-26.0244,-2.10721,0 dDocent_Contig_11631 13 . T C 524.859 . AB=0.384615;ABP=9.02361;AC=3;AF=0.5;AN=6;AO=20;CIGAR=1X;DP=52;DPB=52;DPRA=0;EPP=46.4397;EPPR=72.4974;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=806;QR=1270;RO=32;RPL=0;RPP=46.4397;RPPR=72.4974;RPR=20;RUN=1;SAF=20;SAP=46.4397;SAR=0;SRF=32;SRP=72.4974;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:21:17,4:17:674:4:160:-8.4618,0,-54.6676 0/1:13:10,3:10:395:3:122:-7.4591,0,-31.9948 0/1:18:5,13:5:201:13:524:-42.0878,0,-13.0515 dDocent_Contig_11632 15 . C T 415.548 . AB=0.454545;ABP=3.40511;AC=4;AF=0.666666;AN=6;AO=10;CIGAR=1X1M;DP=33;DPB=33;DPRA=0;EPP=24.725;EPPR=35.5824;GTI=0;LEN=1;MEANALT=2;MQM=60;MQMR=56.8;NS=3;NUMALT=2;ODDS=0;PAIRED=1;PAIREDR=0.866667;PAO=0;PQA=0;PQR=0;PRO=0;QA=404;QR=596;RO=15;RPL=0;RPP=24.725;RPPR=35.5824;RPR=10;RUN=1;SAF=10;SAP=24.725;SAR=0;SRF=15;SRP=35.5824;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|1:11:8,3,0:8:322:3,0:115,0:-7.41245,0,-26.0372,-9.82069,-26.9403,-36.3728 0|1:9:5,0,4:5:201:0,4:0,164:-12.4406,-13.9458,-30.5056,0,-16.9657,-15.7616 1|1:13:2,4,6:2:73:4,6:162,240:-27.2246,-14.4668,-18.5953,-8.06003,0,-11.581 dDocent_Contig_11633 173 . A C 429.508 . AB=0.432432;ABP=4.47751;AC=2;AF=0.5;AN=4;AO=16;CIGAR=1X;DP=37;DPB=37;DPRA=0;EPP=37.7539;EPPR=48.6112;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=2;NUMALT=1;ODDS=0;PAIRED=0.8125;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=634;QR=808;RO=21;RPL=16;RPP=37.7539;RPPR=48.6112;RPR=0;RUN=1;SAF=0;SAP=37.7539;SAR=16;SRF=0;SRP=48.6112;SRR=21;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:19:12,7:12:443:7:283:-20.124,0,-34.4828 ./.:.:.:.:.:.:.:. 0/1:18:9,9:9:365:9:351:-26.5257,0,-27.7963 dDocent_Contig_11634 22 . T C 756.848 . AB=0.388889;ABP=10.7311;AC=3;AF=0.5;AN=6;AO=28;CIGAR=1X;DP=72;DPB=72;DPRA=0;EPP=63.8115;EPPR=98.5551;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=3.46945e-18;PAIRED=0;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=1131;QR=1777;RO=44;RPL=0;RPP=63.8115;RPPR=98.5551;RPR=28;RUN=1;SAF=28;SAP=63.8115;SAR=0;SRF=44;SRP=98.5551;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:42:23,19:23:932:19:765:-56.5276,0,-71.5387 0/1:16:11,5:11:437:5:204:-13.9276,0,-34.865 0/1:14:10,4:10:408:4:162:-10.7525,0,-32.8662 dDocent_Contig_11635 20 . A G 729.795 . AB=0.634146;ABP=9.41879;AC=3;AF=0.5;AN=6;AO=26;CIGAR=1X;DP=41;DPB=41;DPRA=0;EPP=59.4686;EPPR=35.5824;GTI=0;LEN=1;MEANALT=1;MQM=54.1538;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=0;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=1049;QR=611;RO=15;RPL=0;RPP=59.4686;RPPR=35.5824;RPR=26;RUN=1;SAF=26;SAP=59.4686;SAR=0;SRF=15;SRP=35.5824;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:14:6,8:6:243:8:327:-24.9616,0,-18.0338 0/1:20:8,12:8:327:12:478:-33.1747,0,-23.7795 0/1:7:1,6:1:41:6:244:-20.2316,0,-1.98736 dDocent_Contig_11636 13 . A T 107.608 . AB=0.333333;ABP=6.62942;AC=1;AF=0.166667;AN=6;AO=5;CIGAR=1X;DP=47;DPB=47;DPRA=0.9375;EPP=13.8677;EPPR=94.2121;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=186;QR=1669;RO=42;RPL=0;RPP=13.8677;RPPR=94.2121;RPR=5;RUN=1;SAF=5;SAP=13.8677;SAR=0;SRF=42;SRP=94.2121;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:17:17,0:17:681:0:0:0,-5.11751,-61.6202 0/1:15:10,5:10:393:5:186:-12.5847,0,-31.2106 0/0:15:15,0:15:595:0:0:0,-4.51545,-53.8883 dDocent_Contig_11639 26 . A G 180.612 . AB=0.142857;ABP=57.2971;AC=2;AF=0.333334;AN=6;AO=7;CIGAR=1X3M;DP=60;DPB=60;DPRA=2.22727;EPP=18.2106;EPPR=100.727;GTI=0;LEN=1;MEANALT=2.5;MQM=60;MQMR=60;NS=3;NUMALT=3;ODDS=6.93889e-18;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=270;QR=1759;RO=45;RPL=0;RPP=18.2106;RPPR=100.727;RPR=7;RUN=1;SAF=7;SAP=18.2106;SAR=0;SRF=45;SRP=100.727;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|1:31:22,5,2,2:22:878:5,2,2:195,73,79:-9.41054,0,-70.8217,-10.0758,-66.3662,-81.7903,-9.52993,-65.8263,-75.8919,-81.2509 0|0:11:11,0,0,0:11:414:0,0,0:0,0,0:0,-3.31133,-37.6039,-3.31133,-37.6039,-37.6039,-3.31133,-37.6039,-37.6039,-37.6039 0|1:18:12,0,1,5:12:467:0,1,5:0,24,191:-12.1736,-15.7859,-54.1849,-13.9507,-52.3342,-52.0332,0,-38.5158,-36.6684,-37.0107 dDocent_Contig_11640 12 . A T 104.487 . AB=0;ABP=0;AC=4;AF=1;AN=4;AO=3;CIGAR=1X;DP=3;DPB=3;DPRA=0;EPP=9.52472;EPPR=0;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=0;NS=2;NUMALT=1;ODDS=0;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=105;QR=0;RO=0;RPL=0;RPP=9.52472;RPPR=0;RPR=3;RUN=1;SAF=0;SAP=9.52472;SAR=3;SRF=0;SRP=0;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 1/1:1:0,1:0:0:1:35:-3.49863,-0.30103,0 1/1:2:0,2:0:0:2:70:-6.6474,-0.60206,0 ./.:.:.:.:.:.:.:. dDocent_Contig_11641 27 . A C 752.985 . AB=0.122807;ABP=73.4498;AC=4;AF=0.666667;AN=6;AO=7;CIGAR=2M3I2M3I1M1X3M1X;DP=57;DPB=80.3;DPRA=0;EPP=18.2106;EPPR=33.4109;GTI=0;LEN=1;MEANALT=3;MQM=59.8571;MQMR=60;NS=3;NUMALT=4;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=271;QR=553;RO=14;RPL=0;RPP=18.2106;RPPR=33.4109;RPR=7;RUN=1;SAF=7;SAP=18.2106;SAR=0;SRF=14;SRP=33.4109;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|1:20:5,7,3,3,2:5:200:7,3,3,2:273,117,119,79:-20.749,0,-14.3709,-12.6759,-6.90154,-28.251,-12.4729,-6.69817,-19.3737,-28.0485,-15.7525,-9.97725,-22.6529,-22.4503,-31.6287 1|1:5:0,3,0,0,2:0:0:3,0,0,2:115,0,0,75:-15.6824,-6.51804,-5.61495,-15.6824,-6.51804,-15.6824,-15.6824,-6.51804,-15.6824,-15.6824,-9.5384,0,-9.5384,-9.5384,-8.93634 0|1:32:9,15,5,0,3:9:353:15,5,0,3:585,199,0,117:-44.3899,0,-24.5138,-30.7692,-12.7006,-58.2971,-47.0991,-29.0293,-59.8022,-76.131,-37.482,-19.4133,-50.1851,-66.5141,-65.611 dDocent_Contig_11645 14 . G A 530.497 . 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AB=0.535714;ABP=3.32051;AC=2;AF=0.333333;AN=6;AO=15;CIGAR=1X;DP=47;DPB=47;DPRA=0.736842;EPP=35.5824;EPPR=72.4974;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=576;QR=1213;RO=32;RPL=15;RPP=35.5824;RPPR=72.4974;RPR=0;RUN=1;SAF=0;SAP=35.5824;SAR=15;SRF=0;SRP=72.4974;SRR=32;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:21:9,12:9:332:12:459:-35.3374,0,-23.9055 0/0:19:19,0:19:729:0:0:0,-5.71957,-65.9356 0/1:7:4,3:4:152:3:117:-8.80317,0,-11.942 dDocent_Contig_11647 29 . G A 67.7006 . 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AB=0.333333;ABP=6.62942;AC=0;AF=0;AN=6;AO=5;CIGAR=1X1M1X;DP=45;DPB=45;DPRA=0;EPP=13.8677;EPPR=59.4686;GTI=0;LEN=1;MEANALT=2;MQM=9;MQMR=60;NS=3;NUMALT=2;ODDS=0;PAIRED=0;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=174;QR=828;RO=26;RPL=0;RPP=13.8677;RPPR=59.4686;RPR=5;RUN=1;SAF=0;SAP=13.8677;SAR=5;SRF=0;SRP=59.4686;SRR=26;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|0:25:16,0,9:16:504:0,9:0,315:-13.7565,-18.573,-59.1395,0,-40.846,-38.1367 0|0:5:3,0,2:3:92:0,2:0,68:-3.31374,-4.21683,-11.6239,0,-7.68192,-7.07986 0|0:15:7,5,3:7:232:5,3:174,104:-1.27484,-0.884124,-18.2674,0,-16.468,-18.0046 dDocent_Contig_11650 57 . G A 1805.22 . 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AB=0.576923;ABP=8.35546;AC=3;AF=0.5;AN=6;AO=60;CIGAR=1X;DP=104;DPB=104;DPRA=0;EPP=133.299;EPPR=98.5551;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=2406;QR=1665;RO=44;RPL=0;RPP=133.299;RPPR=98.5551;RPR=60;RUN=1;SAF=60;SAP=133.299;SAR=0;SRF=44;SRP=98.5551;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:48:20,28:20:752:28:1114:-86.0972,0,-53.549 0/1:17:8,9:8:302:9:363:-27.9168,0,-22.419 0/1:39:16,23:16:611:23:929:-72.1733,0,-43.5862 dDocent_Contig_11665 67 . C G 494.214 . 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AB=0.277778;ABP=18.4519;AC=3;AF=0.5;AN=6;AO=10;CIGAR=1X8M;DP=36;DPB=36.4444;DPRA=0;EPP=24.725;EPPR=48.6112;GTI=0;LEN=1;MEANALT=1.66667;MQM=51.9;MQMR=60;NS=3;NUMALT=2;ODDS=3.46945e-18;PAIRED=0.9;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=366;QR=816;RO=21;RPL=0;RPP=24.725;RPPR=48.6112;RPR=10;RUN=1;SAF=10;SAP=24.725;SAR=0;SRF=21;SRP=48.6112;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|1:22:11,4,7:11:425:4,7:156,253:-16.7662,-17.4112,-51.1355,0,-32.4288,-33.0015 0|1:6:3,0,2:3:112:0,2:0,74:-5.18374,-6.08683,-15.2665,0,-9.2096,-8.60754 0|1:8:7,0,1:7:279:0,1:0,39:-1.48832,-3.59553,-26.5793,0,-23.3745,-23.0735 dDocent_Contig_11668 45 . A T 714.073 . AB=0.446809;ABP=4.16534;AC=4;AF=0.666667;AN=6;AO=25;CIGAR=1X;DP=51;DPB=51;DPRA=0;EPP=48.9587;EPPR=57.2971;GTI=0;LEN=1;MEANALT=1.33333;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=979;QR=985;RO=25;RPL=1;RPP=48.9587;RPPR=57.2971;RPR=24;RUN=1;SAF=25;SAP=57.2971;SAR=0;SRF=25;SRP=57.2971;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:33:19,13:19:748:13:518:-36.9256,0,-57.6029 1/1:4:0,4:0:0:4:154:-14.2312,-1.20412,0 0/1:14:6,8:6:237:8:307:-23.7733,0,-17.4876 dDocent_Contig_11669 31 . G T 61.6851 . AB=0.3;ABP=6.48466;AC=1;AF=0.166667;AN=6;AO=3;CIGAR=1X;DP=46;DPB=46;DPRA=0.555556;EPP=9.52472;EPPR=96.3836;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=118;QR=1688;RO=43;RPL=0;RPP=9.52472;RPPR=96.3836;RPR=3;RUN=1;SAF=3;SAP=9.52472;SAR=0;SRF=43;SRP=96.3836;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:16:16,0:16:643:0:0:0,-4.81648,-58.202 0/1:10:7,3:7:266:3:118:-7.99242,0,-21.2865 0/0:20:20,0:20:779:0:0:0,-6.0206,-70.4207 dDocent_Contig_11670 7 . C T 564.366 . AB=0.239316;ABP=72.0705;AC=3;AF=0.5;AN=6;AO=28;CIGAR=1X;DP=117;DPB=117;DPRA=0;EPP=63.8115;EPPR=196.271;GTI=0;LEN=1;MEANALT=1;MQM=59;MQMR=52.5393;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=0.898876;PAO=0;PQA=0;PQR=0;PRO=0;QA=1069;QR=3423;RO=89;RPL=0;RPP=63.8115;RPPR=196.271;RPR=28;RUN=1;SAF=28;SAP=63.8115;SAR=0;SRF=89;SRP=196.271;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:52:41,11:41:1593:11:414:-21.9541,0,-120.9 0/1:25:19,6:19:716:6:230:-13.4421,0,-48.2181 0/1:40:29,11:29:1114:11:425:-26.5632,0,-83.3903 dDocent_Contig_11671 142 . C A 149.216 . AB=0.444444;ABP=3.25157;AC=3;AF=0.5;AN=6;AO=5;CIGAR=1X;DP=18;DPB=18;DPRA=0.625;EPP=13.8677;EPPR=31.2394;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=204;QR=529;RO=13;RPL=0;RPP=13.8677;RPPR=31.2394;RPR=5;RUN=1;SAF=0;SAP=13.8677;SAR=5;SRF=0;SRP=31.2394;SRR=13;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:8:8,0:8:325:0:0:0,-2.40824,-29.6196 1/1:1:0,1:0:0:1:41:-4.09457,-0.30103,0 0/1:9:5,4:5:204:4:163:-12.3492,0,-16.0348 dDocent_Contig_11672 38 . T A 70.6959 . AB=0.162162;ABP=39.6906;AC=2;AF=0.333333;AN=6;AO=6;CIGAR=1X;DP=49;DPB=49;DPRA=1.54167;EPP=16.0391;EPPR=96.3836;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=0;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=233;QR=1687;RO=43;RPL=0;RPP=16.0391;RPPR=96.3836;RPR=6;RUN=1;SAF=6;SAP=16.0391;SAR=0;SRF=43;SRP=96.3836;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:30:26,4:26:1028:4:153:-5.10795,0,-83.784 0/1:7:5,2:5:189:2:80:-5.48436,0,-15.2644 0/0:12:12,0:12:470:0:0:0,-3.61236,-42.6413 dDocent_Contig_11673 22 . A C 118.862 . AB=0.194444;ABP=32.2045;AC=2;AF=0.333333;AN=6;AO=9;CIGAR=1X;DP=75;DPB=75;DPRA=0;EPP=22.5536;EPPR=146.327;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=0.888889;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=364;QR=2609;RO=66;RPL=0;RPP=22.5536;RPPR=146.327;RPR=9;RUN=1;SAF=9;SAP=22.5536;SAR=0;SRF=66;SRP=146.327;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:39:37,2:37:1472:2:81:0,-4.05444,-125.044 0/1:12:9,3:9:360:3:120:-7.57533,0,-29.1506 0/1:24:20,4:20:777:4:163:-7.83371,0,-63.0165 dDocent_Contig_11675 14 . T A 1135.6 . AB=0.471264;ABP=3.63429;AC=3;AF=0.5;AN=6;AO=41;CIGAR=1X;DP=87;DPB=87;DPRA=0;EPP=92.0407;EPPR=102.898;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=1603;QR=1842;RO=46;RPL=0;RPP=92.0407;RPPR=102.898;RPR=41;RUN=1;SAF=41;SAP=92.0407;SAR=0;SRF=46;SRP=102.898;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:32:12,20:12:475:20:794:-62.1419,0,-33.4668 0/1:23:7,16:7:282:16:621:-49.2974,0,-18.8289 0/1:32:27,5:27:1085:5:188:-7.64394,0,-88.3043 dDocent_Contig_11678 7 . C T 875.484 . AB=0.112903;ABP=164.4;AC=1;AF=0.166667;AN=6;AO=14;CIGAR=2X3M1X3M1X1M1X2M1X5M;DP=275;DPB=271.4;DPRA=0;EPP=33.4109;EPPR=87.6977;GTI=0;LEN=1;MEANALT=18;MQM=44.4286;MQMR=60;NS=3;NUMALT=9;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=551;QR=1527;RO=39;RPL=0;RPP=33.4109;RPPR=87.6977;RPR=14;RUN=1;SAF=14;SAP=33.4109;SAR=0;SRF=39;SRP=87.6977;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|0:151:21,0,4,10,16,16,11,15,6,10:21:815:0,4,10,16,16,11,15,6,10:0,154,380,513,617,415,589,238,403:-44.3261,-50.6478,-117.613,-38.0405,-105.006,-103.802,-19.4854,-86.4517,-73.8446,-83.4414,-13.4897,-80.4547,-67.8478,-49.2934,-75.6382,0,-66.967,-54.3598,-35.8048,-29.8088,-62.1505,-19.397,-86.3629,-73.7559,-55.2012,-49.205,-35.7163,-83.0516,-2.29675,-69.2638,-56.6566,-38.1016,-32.1055,-18.6164,-38.013,-64.7483,-31.0554,-98.0215,-85.4145,-66.8597,-60.863,-47.3748,-66.771,-49.6715,-96.2154,-17.4258,-84.3924,-71.7853,-53.2304,-47.2339,-33.7453,-53.1417,-36.0421,-64.8003,-81.3821 0|0:38:6,3,3,4,0,6,1,0,2,3:6:237:3,3,4,0,6,1,0,2,3:120,118,119,0,239,39,0,80,115:-17.8801,-10.4733,-29.0792,-10.1853,-20.482,-28.7914,-10.7358,-21.0314,-20.7435,-29.0387,-19.6863,-29.9823,-29.6945,-30.2428,-39.1946,0,-10.2979,-10.0099,-10.5604,-19.511,-17.7048,-16.7057,-27.0018,-26.714,-27.2626,-36.2141,-16.5303,-35.9131,-19.6863,-29.9823,-29.6945,-30.2428,-39.1946,-19.511,-36.2141,-39.1946,-13.0935,-23.39,-23.1022,-23.6511,-32.6025,-12.9181,-29.622,-32.6025,-32.0004,-10.2475,-20.5442,-20.2563,-20.8056,-29.7567,-10.0721,-26.7762,-29.7567,-23.1643,-28.8536 0|1:86:12,11,4,5,0,2,11,9,1,7:12:475:11,4,5,0,2,11,9,1,7:431,157,187,0,80,383,348,40,280:-30.8643,0,-35.789,-21.6012,-26.2251,-59.4967,-19.1642,-23.7881,-45.3887,-56.7586,-34.4766,-39.1004,-60.7008,-58.2637,-73.5758,-27.8854,-32.5093,-54.1099,-51.6728,-66.9849,-66.3828,-5.94308,-10.5672,-32.167,-29.7301,-45.0418,-38.4509,-41.7305,-5.89309,-10.5172,-32.1181,-29.6811,-44.9933,-38.4022,-16.4598,-42.284,-31.181,-35.8048,-57.4054,-54.9683,-70.2803,-63.6894,-41.7464,-41.6978,-69.9793,-11.4096,-16.0336,-37.6345,-35.1974,-50.5097,-43.9187,-21.9759,-21.9267,-47.2142,-48.4025 dDocent_Contig_11679 12 . A C 352.282 . AB=0.236111;ABP=46.5604;AC=3;AF=0.5;AN=6;AO=17;CIGAR=1X;DP=72;DPB=72;DPRA=0;EPP=39.9253;EPPR=122.441;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=681;QR=2177;RO=55;RPL=0;RPP=39.9253;RPPR=122.441;RPR=17;RUN=1;SAF=17;SAP=39.9253;SAR=0;SRF=55;SRP=122.441;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:37:33,4:33:1303:4:160:-3.6459,0,-106.4 0/1:19:11,8:11:431:8:320:-23.4479,0,-33.4179 0/1:16:11,5:11:443:5:201:-13.654,0,-35.4092 dDocent_Contig_11680 41 . T A 332.462 . AB=0.25;ABP=35.5824;AC=2;AF=0.333333;AN=6;AO=15;CIGAR=1X;DP=145;DPB=145;DPRA=0.352941;EPP=35.5824;EPPR=285.302;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=601;QR=5154;RO=130;RPL=0;RPP=35.5824;RPPR=285.302;RPR=15;RUN=1;SAF=15;SAP=35.5824;SAR=0;SRF=130;SRP=285.302;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:85:85,0:85:3392:0:0:0,-25.5875,-305.327 0/1:15:11,4:11:438:4:163:-10.543,0,-35.258 0/1:45:34,11:34:1324:11:438:-26.2261,0,-105.875 dDocent_Contig_11684 7 . C G 254.616 . AB=0;ABP=0;AC=2;AF=0.333333;AN=6;AO=11;CIGAR=1X;DP=39;DPB=39;DPRA=0.8;EPP=26.8965;EPPR=63.8115;GTI=0;LEN=1;MEANALT=1;MQM=59.1818;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=0;PAIREDR=0.964286;PAO=0;PQA=0;PQR=0;PRO=0;QA=317;QR=1057;RO=28;RPL=0;RPP=26.8965;RPPR=63.8115;RPR=11;RUN=1;SAF=11;SAP=26.8965;SAR=0;SRF=28;SRP=63.8115;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:14:13,1:13:504:1:39:0,-0.317855,-41.8125 1/1:10:0,10:0:0:10:278:-25.2848,-3.0103,0 0/0:15:15,0:15:553:0:0:0,-4.51545,-50.0973 dDocent_Contig_11685 12 . C T 254.834 . AB=0.357143;ABP=7.97367;AC=2;AF=0.333333;AN=6;AO=12;CIGAR=1X;DP=62;DPB=62;DPRA=0;EPP=29.068;EPPR=111.584;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=489;QR=2027;RO=50;RPL=0;RPP=29.068;RPPR=111.584;RPR=12;RUN=1;SAF=12;SAP=29.068;SAR=0;SRF=50;SRP=111.584;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:34:32,2:32:1297:2:82:0,-2.45534,-109.211 0/1:5:4,1:4:162:1:40:-2.49053,0,-13.4616 0/1:23:14,9:14:568:9:367:-26.4714,0,-44.538 dDocent_Contig_11687 10 . T C 73.9721 . AB=0.185185;ABP=26.2531;AC=2;AF=0.333333;AN=6;AO=5;CIGAR=1X;DP=32;DPB=32;DPRA=2.7;EPP=13.8677;EPPR=61.6401;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=202;QR=1093;RO=27;RPL=0;RPP=13.8677;RPPR=61.6401;RPR=5;RUN=1;SAF=5;SAP=13.8677;SAR=0;SRF=27;SRP=61.6401;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:8:7,1:7:279:1:41:-1.68633,0,-23.0718 0/0:5:5,0:5:202:0:0:0,-1.50515,-18.5615 0/1:19:15,4:15:612:4:161:-9.15591,0,-49.6976 dDocent_Contig_11689 18 . C T 188.869 . AB=0.163043;ABP=93.7401;AC=2;AF=0.333333;AN=6;AO=18;CIGAR=1X;DP=134;DPB=134;DPRA=0;EPP=42.0968;EPPR=254.901;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=654;QR=4530;RO=116;RPL=0;RPP=42.0968;RPPR=254.901;RPR=18;RUN=1;SAF=18;SAP=42.0968;SAR=0;SRF=116;SRP=254.901;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:73:61,12:61:2357:12:441:-18.0549,0,-190.333 0/1:19:16,3:16:632:3:108:-4.35416,0,-51.4974 0/0:42:39,3:39:1541:3:105:0,-2.84812,-129.151 dDocent_Contig_11690 14 . T C 2714.95 . AB=0.447489;ABP=8.25555;AC=3;AF=0.5;AN=6;AO=98;CIGAR=1X;DP=219;DPB=219;DPRA=0;EPP=215.815;EPPR=259.244;GTI=0;LEN=1;MEANALT=1.33333;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=3796;QR=4706;RO=118;RPL=0;RPP=215.815;RPPR=259.244;RPR=98;RUN=1;SAF=98;SAP=215.815;SAR=0;SRF=118;SRP=259.244;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:122:79,43:79:3136:43:1659:-112.814,0,-245.6 0/1:24:5,19:5:199:19:718:-57.7149,0,-11.062 0/1:73:34,36:34:1371:36:1419:-106.489,0,-102.166 dDocent_Contig_11691 209 . N G 111.105 . AB=0;ABP=0;AC=4;AF=1;AN=4;AO=3;CIGAR=1X;DP=3;DPB=3;DPRA=0;EPP=9.52472;EPPR=0;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=0;NS=2;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=112;QR=0;RO=0;RPL=3;RPP=9.52472;RPPR=0;RPR=0;RUN=1;SAF=0;SAP=9.52472;SAR=3;SRF=0;SRP=0;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 1/1:2:0,2:0:0:2:77:-7.30914,-0.60206,0 1/1:1:0,1:0:0:1:35:-3.49863,-0.30103,0 ./.:.:.:.:.:.:.:. dDocent_Contig_11692 23 . G A 49.8264 . AB=0.170732;ABP=41.6201;AC=3;AF=0.5;AN=6;AO=7;CIGAR=1X;DP=41;DPB=41;DPRA=0;EPP=18.2106;EPPR=76.8404;GTI=0;LEN=1;MEANALT=1;MQM=34.7143;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=0;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=282;QR=1355;RO=34;RPL=0;RPP=18.2106;RPPR=76.8404;RPR=7;RUN=1;SAF=7;SAP=18.2106;SAR=0;SRF=34;SRP=76.8404;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:16:13,3:13:523:3:120:-3.82489,0,-42.6003 0/1:7:6,1:6:238:1:41:-1.21381,0,-19.6853 0/1:18:15,3:15:594:3:121:-4.65521,0,-48.3799 dDocent_Contig_11693 8 . A G 136.515 . AB=0.333333;ABP=8.07707;AC=2;AF=0.333333;AN=6;AO=7;CIGAR=1X;DP=28;DPB=28;DPRA=1.5;EPP=18.2106;EPPR=48.6112;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=253;QR=773;RO=21;RPL=0;RPP=18.2106;RPPR=48.6112;RPR=7;RUN=1;SAF=7;SAP=18.2106;SAR=0;SRF=21;SRP=48.6112;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:4:2,2:2:71:2:78:-6.19935,0,-5.53778 0/1:17:12,5:12:444:5:175:-10.9749,0,-35.1869 0/0:7:7,0:7:258:0:0:0,-2.10721,-23.5733 dDocent_Contig_11694 10 . G A 3073.18 . AB=0.333333;ABP=46.4397;AC=4;AF=0.666667;AN=6;AO=60;CIGAR=1X1M;DP=186;DPB=186;DPRA=0;EPP=133.299;EPPR=102.898;GTI=0;LEN=1;MEANALT=2;MQM=60;MQMR=60;NS=3;NUMALT=2;ODDS=2.77556e-17;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=2380;QR=1788;RO=46;RPL=0;RPP=133.299;RPPR=102.898;RPR=60;RUN=1;SAF=60;SAP=133.299;SAR=0;SRF=46;SRP=102.898;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 1|1:124:29,47,48:29:1124:47,48:1859,1910:-209.178,-64.9322,-143.121,-60.6439,0,-138.533 0|1:6:2,4,0:2:77:4,0:159,0:-12.8862,0,-5.50296,-13.4882,-6.70708,-19.8065 0|1:56:15,29,12:15:587:29,12:1157,470:-90.7767,0,-39.5349,-56.6495,-9.61986,-101.299 dDocent_Contig_11695 9 . A T 500.276 . AB=0.291667;ABP=30.1537;AC=1;AF=0.166667;AN=6;AO=24;CIGAR=1X;DP=132;DPB=132;DPRA=0;EPP=55.1256;EPPR=237.529;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=926;QR=4130;RO=108;RPL=0;RPP=55.1256;RPPR=237.529;RPR=24;RUN=1;SAF=24;SAP=55.1256;SAR=0;SRF=108;SRP=237.529;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:72:51,21:51:1959:21:810:-51.5505,0,-154.879 0/0:35:33,2:33:1245:2:77:0,-3.22691,-105.035 0/0:25:24,1:24:926:1:39:0,-3.62919,-79.759 dDocent_Contig_11696 8 . A T 333.923 . AB=0.242424;ABP=41.044;AC=1;AF=0.166667;AN=6;AO=16;CIGAR=1X;DP=117;DPB=117;DPRA=2.58824;EPP=37.7539;EPPR=222.329;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=605;QR=3903;RO=101;RPL=0;RPP=37.7539;RPPR=222.329;RPR=16;RUN=1;SAF=16;SAP=37.7539;SAR=0;SRF=101;SRP=222.329;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:66:50,16:50:1931:16:605:-34.9151,0,-154.164 0/0:23:23,0:23:884:0:0:0,-6.92369,-79.88 0/0:28:28,0:28:1088:0:0:0,-8.42884,-98.2241 dDocent_Contig_11697 9 . A T 37.0981 . AB=0.108108;ABP=101.724;AC=1;AF=0.166667;AN=6;AO=18;CIGAR=1X;DP=281;DPB=281;DPRA=0;EPP=42.0968;EPPR=574.108;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=59.943;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=0.961977;PAO=0;PQA=0;PQR=0;PRO=0;QA=688;QR=9980;RO=263;RPL=0;RPP=42.0968;RPPR=574.108;RPR=18;RUN=1;SAF=18;SAP=42.0968;SAR=0;SRF=263;SRP=574.108;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:153:146,7:146:5529:7:266:0,-21.7559,-473.296 0/0:54:51,3:51:1923:3:117:0,-5.34524,-162.407 0/1:74:66,8:66:2528:8:305:-5.53363,0,-205.444 dDocent_Contig_11699 15 . G A 670.545 . AB=0.421053;ABP=6.09608;AC=2;AF=0.5;AN=4;AO=24;CIGAR=1X;DP=57;DPB=57;DPRA=0;EPP=55.1256;EPPR=74.6689;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=2;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=969;QR=1330;RO=33;RPL=0;RPP=55.1256;RPPR=74.6689;RPR=24;RUN=1;SAF=24;SAP=55.1256;SAR=0;SRF=33;SRP=74.6689;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:39:18,21:18:730:21:847:-64.7995,0,-54.2847 ./.:.:.:.:.:.:.:. 0/1:18:15,3:15:600:3:122:-5.95395,0,-48.9194 dDocent_Contig_11700 28 . T G 266.879 . AB=0.416667;ABP=4.45795;AC=2;AF=0.333333;AN=6;AO=10;CIGAR=1X;DP=32;DPB=32;DPRA=1.5;EPP=24.725;EPPR=50.7827;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=407;QR=872;RO=22;RPL=0;RPP=24.725;RPPR=50.7827;RPR=10;RUN=1;SAF=10;SAP=24.725;SAR=0;SRF=22;SRP=50.7827;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:19:10,9:10:393:9:366:-27.5856,0,-30.0078 0/0:8:8,0:8:322:0:0:0,-2.40824,-29.3483 0/1:5:4,1:4:157:1:41:-2.58942,0,-13.002 dDocent_Contig_11701 19 . T G 728.79 . AB=0.419355;ABP=6.51267;AC=2;AF=0.333333;AN=6;AO=30;CIGAR=1X;DP=113;DPB=113;DPRA=0;EPP=68.1545;EPPR=183.243;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=6.93889e-18;PAIRED=1;PAIREDR=0.975904;PAO=0;PQA=0;PQR=0;PRO=0;QA=1203;QR=3342;RO=83;RPL=0;RPP=68.1545;RPPR=183.243;RPR=30;RUN=1;SAF=30;SAP=68.1545;SAR=0;SRF=83;SRP=183.243;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:55:30,25:30:1206:25:1006:-74.2799,0,-92.2591 0/1:7:6,1:6:238:1:41:-1.98736,0,-19.6846 0/0:51:47,4:47:1898:4:156:0,-0.936702,-156.603 dDocent_Contig_11702 15 . A T 1567.56 . AB=0.653846;ABP=19.0458;AC=3;AF=0.5;AN=6;AO=51;CIGAR=1X;DP=78;DPB=78;DPRA=0;EPP=113.755;EPPR=61.6401;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=2053;QR=1077;RO=27;RPL=0;RPP=113.755;RPPR=61.6401;RPR=51;RUN=1;SAF=51;SAP=113.755;SAR=0;SRF=27;SRP=61.6401;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:56:18,38:18:713:38:1527:-120.807,0,-47.6381 0/1:5:3,2:3:121:2:82:-6.27453,0,-9.77484 0/1:17:6,11:6:243:11:444:-35.1976,0,-17.1305 dDocent_Contig_11703 15 . A G 171.108 . AB=0.285714;ABP=14.1779;AC=2;AF=0.333333;AN=6;AO=8;CIGAR=1X;DP=48;DPB=48;DPRA=0.7;EPP=20.3821;EPPR=89.8692;GTI=0;LEN=1;MEANALT=1;MQM=49.875;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=0;PAIREDR=0.725;PAO=0;PQA=0;PQR=0;PRO=0;QA=319;QR=1588;RO=40;RPL=0;RPP=20.3821;RPPR=89.8692;RPR=8;RUN=1;SAF=8;SAP=20.3821;SAR=0;SRF=40;SRP=89.8692;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:20:20,0:20:799:0:0:0,-6.0206,-72.2257 0/1:4:2,2:2:68:2:81:-6.42003,0,-5.25051 0/1:24:18,6:18:721:6:238:-14.2135,0,-57.9919 dDocent_Contig_11705 68 . A G 161.15 . AB=0.307692;ABP=11.3621;AC=2;AF=0.333333;AN=6;AO=8;CIGAR=1X;DP=56;DPB=56;DPRA=0.433333;EPP=20.3821;EPPR=107.241;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=297;QR=1791;RO=48;RPL=8;RPP=20.3821;RPPR=107.241;RPR=0;RUN=1;SAF=8;SAP=20.3821;SAR=0;SRF=48;SRP=107.241;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:30:30,0:30:1147:0:0:0,-9.0309,-103.531 0/1:4:2,2:2:76:2:77:-6.10502,0,-6.01055 0/1:22:16,6:16:568:6:220:-13.5328,0,-44.8228 dDocent_Contig_11707 68 . T G 198.253 . AB=0.421053;ABP=4.03889;AC=2;AF=0.333333;AN=6;AO=8;CIGAR=1X;DP=32;DPB=32;DPRA=0.730769;EPP=20.3821;EPPR=55.1256;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=1.73472e-18;PAIRED=0.5;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=314;QR=953;RO=24;RPL=8;RPP=20.3821;RPPR=55.1256;RPR=0;RUN=1;SAF=8;SAP=20.3821;SAR=0;SRF=24;SRP=55.1256;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:13:13,0:13:506:0:0:0,-3.91339,-45.8783 0/1:14:7,7:7:286:7:274:-20.8132,0,-21.9004 0/1:5:4,1:4:161:1:40:-2.49053,0,-13.3703 dDocent_Contig_11709 107 . N A 299.4 . AB=0;ABP=0;AC=4;AF=1;AN=4;AO=10;CIGAR=1X;DP=10;DPB=10;DPRA=0;EPP=24.725;EPPR=0;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=0;NS=2;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=322;QR=0;RO=0;RPL=0;RPP=24.725;RPPR=0;RPR=10;RUN=1;SAF=0;SAP=24.725;SAR=10;SRF=0;SRP=0;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 1/1:2:0,2:0:0:2:71:-6.74206,-0.60206,0 ./.:.:.:.:.:.:.:. 1/1:8:0,8:0:0:8:251:-22.8963,-2.40824,0 dDocent_Contig_11711 14 . T A 80.365 . AB=0.2;ABP=26.4622;AC=3;AF=0.5;AN=6;AO=6;CIGAR=1X;DP=30;DPB=30;DPRA=0;EPP=16.0391;EPPR=55.1256;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=238;QR=968;RO=24;RPL=0;RPP=16.0391;RPPR=55.1256;RPR=6;RUN=1;SAF=6;SAP=16.0391;SAR=0;SRF=24;SRP=55.1256;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:13:11,2:11:445:2:80:-3.67819,0,-36.4921 0/1:7:5,2:5:201:2:80:-5.48436,0,-16.3637 0/1:10:8,2:8:322:2:78:-4.39317,0,-26.3369 dDocent_Contig_11712 13 . T C 93.4214 . 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AB=0.393939;ABP=6.23461;AC=3;AF=0.5;AN=6;AO=13;CIGAR=1X;DP=33;DPB=33;DPRA=0;EPP=31.2394;EPPR=46.4397;GTI=0;LEN=1;MEANALT=1;MQM=33.3846;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=0;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=403;QR=577;RO=20;RPL=0;RPP=31.2394;RPPR=46.4397;RPR=13;RUN=1;SAF=0;SAP=31.2394;SAR=13;SRF=0;SRP=46.4397;SRR=20;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:16:10,6:10:294:6:185:-10.7932,0,-21.933 0/1:9:6,3:6:179:3:86:-4.69706,0,-13.6961 0/1:8:4,4:4:104:4:132:-7.36294,0,-7.21017 dDocent_Contig_11721 116 . T A 337.234 . 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AB=0.101266;ABP=221.202;AC=1;AF=0.166667;AN=6;AO=16;CIGAR=1X1M1X3M1D1X9M3X;DP=158;DPB=155.8;DPRA=0;EPP=37.7539;EPPR=42.0968;GTI=0;LEN=1;MEANALT=16;MQM=48.75;MQMR=60;NS=3;NUMALT=9;ODDS=5.55112e-17;PAIRED=0.875;PAIREDR=1;PAO=4.26786;PQA=146.536;PQR=69;PRO=2;QA=552;QR=700;RO=18;RPL=0;RPP=37.7539;RPPR=42.0968;RPR=16;RUN=1;SAF=16;SAP=37.7539;SAR=0;SRF=18;SRP=42.0968;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 1|0:60:0,4,5,4,10,0,0,6,11,3:0:0:4,5,4,10,0,0,6,11,3:156,143,64,332,0,0,236,428,123:-61.4277,-48.6193,-47.4152,-50.6738,-37.8654,-49.1687,-57.9504,-45.1428,-47.1984,-56.7463,-35.1879,-22.3788,-24.4355,-31.714,-32.1776,-61.4277,-48.6193,-50.6738,-57.9504,-35.1879,-61.4277,-61.4277,-48.6193,-50.6738,-57.9504,-35.1879,-61.4277,-61.4277,-42.3827,-29.5733,-31.6289,-38.9067,-16.1419,-42.3827,-42.3827,-40.5765,-26.2423,-13.4319,-15.4885,-22.7675,0,-26.2423,-26.2423,-7.19416,-22.931,-51.2716,-38.4626,-40.5176,-47.7948,-25.0311,-51.2716,-51.2716,-32.2258,-16.0844,-50.3685 0|0:51:13,0,3,8,2,4,2,2,0,0:13:504:0,3,8,2,4,2,2,0,0:0,93,128,71,156,79,79,0,0:-8.92197,-12.8354,-54.2688,-5.64705,-47.0825,-46.1794,-5.89273,-47.3186,-40.1349,-44.9103,-7.06374,-48.4993,-41.3129,-41.5503,-47.8972,0,-41.4391,-34.2524,-34.4909,-35.6691,-40.235,-6.38209,-47.8182,-40.6317,-40.8689,-42.0484,-34.9879,-47.2161,-6.32831,-47.7645,-40.5779,-40.8152,-41.9947,-34.9341,-41.3135,-47.1624,-12.8354,-54.2688,-47.0825,-47.3186,-48.4993,-41.4391,-47.8182,-47.7645,-54.2688,-12.8354,-54.2688,-47.0825,-47.3186,-48.4993,-41.4391,-47.8182,-47.7645,-54.2688,-54.2688 0|0:47:5,2,2,4,4,4,5,2,3,3:5:196:2,2,4,4,4,5,2,3,3:78,79,64,149,159,186,80,110,123:-13.4196,-8.51094,-24.0328,-8.4318,-18.1422,-23.9537,-11.454,-21.1629,-21.0838,-26.3715,-2.76234,-12.4729,-12.3938,-15.4156,-17.6825,-1.82839,-11.5391,-11.46,-14.4817,-5.79059,-16.7488,0,-9.71067,-9.63153,-12.6539,-3.96222,-3.02828,-14.6192,-8.3319,-18.0423,-17.9632,-20.9839,-12.2939,-11.3601,-9.53163,-23.8538,-6.55895,-16.2692,-16.1901,-19.2115,-10.5209,-9.58712,-7.75875,-16.0902,-21.7797,-4.76763,-14.4783,-14.3991,-17.4203,-8.72974,-7.79592,-5.96744,-14.2992,-12.5262,-19.9889 dDocent_Contig_11726 10 . G A 1090.68 . AB=0.506849;ABP=3.04005;AC=2;AF=0.333333;AN=6;AO=37;CIGAR=1X;DP=78;DPB=78;DPRA=7.3;EPP=83.3548;EPPR=92.0407;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=3.46945e-18;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=1488;QR=1571;RO=41;RPL=0;RPP=83.3548;RPPR=92.0407;RPR=37;RUN=1;SAF=37;SAP=83.3548;SAR=0;SRF=41;SRP=92.0407;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:36:9,27:9:347:27:1083:-86.9185,0,-20.7458 0/0:5:5,0:5:199:0:0:0,-1.50515,-18.2886 0/1:37:27,10:27:1025:10:405:-25.6719,0,-81.3973 dDocent_Contig_11727 38 . A T 104.582 . AB=0.214286;ABP=22.8638;AC=3;AF=0.5;AN=6;AO=6;CIGAR=1X;DP=28;DPB=28;DPRA=0;EPP=16.0391;EPPR=50.7827;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=236;QR=891;RO=22;RPL=0;RPP=16.0391;RPPR=50.7827;RPR=6;RUN=1;SAF=6;SAP=16.0391;SAR=0;SRF=22;SRP=50.7827;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:8:7,1:7:285:1:41:-1.68633,0,-23.6162 0/1:13:12,1:12:484:1:40:-0.0822893,0,-39.9977 0/1:7:3,4:3:122:4:155:-12.2154,0,-9.26528 dDocent_Contig_11728 19 . C T 9023.11 . AB=0.0410095;ABP=583.081;AC=0;AF=0;AN=6;AO=13;CIGAR=1X2M1X2M1X2M1X;DP=382;DPB=382;DPRA=2.43846;EPP=31.2394;EPPR=115.927;GTI=0;LEN=1;MEANALT=10;MQM=46.3077;MQMR=60;NS=3;NUMALT=2;ODDS=0;PAIRED=1;PAIREDR=0.788462;PAO=0;PQA=0;PQR=0;PRO=0;QA=502;QR=2025;RO=52;RPL=0;RPP=31.2394;RPPR=115.927;RPR=13;RUN=1;SAF=13;SAP=31.2394;SAR=0;SRF=52;SRP=115.927;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|0:168:19,5,130:19:747:5,130:186,5142:-417.425,-408.328,-468.268,0,-46.6394,-22.3201 0|0:65:1,0,62:1:37:0,62:0,2446:-216.648,-216.949,-219.975,-15.6152,-18.6639,0 0|0:149:32,8,86:32:1241:8,86:316,3418:-271.761,-256.031,-355.576,0,-76.5941,-76.07 dDocent_Contig_11731 156 . T C 45.2181 . AB=0.214286;ABP=12.937;AC=1;AF=0.166667;AN=6;AO=3;CIGAR=1X;DP=27;DPB=27;DPRA=2.15385;EPP=9.52472;EPPR=55.1256;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=0.958333;PAO=0;PQA=0;PQR=0;PRO=0;QA=110;QR=942;RO=24;RPL=0;RPP=9.52472;RPPR=46.8017;RPR=3;RUN=1;SAF=0;SAP=9.52472;SAR=3;SRF=1;SRP=46.8017;SRR=23;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:14:11,3:11:444:3:110:-6.0445,0,-36.1018 0/0:10:10,0:10:386:0:0:0,-3.0103,-35.0865 0/0:3:3,0:3:112:0:0:0,-0.90309,-10.4457 dDocent_Contig_11732 7 . C G 329.842 . AB=0.375;ABP=8.43898;AC=4;AF=0.666667;AN=6;AO=16;CIGAR=1X;DP=41;DPB=41;DPRA=0;EPP=37.7539;EPPR=57.2971;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=528;QR=972;RO=25;RPL=0;RPP=37.7539;RPPR=57.2971;RPR=16;RUN=1;SAF=16;SAP=37.7539;SAR=0;SRF=25;SRP=57.2971;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:28:18,10:18:700:10:303:-19.129,0,-54.9052 1/1:1:0,1:0:0:1:38:-3.79727,-0.30103,0 0/1:12:7,5:7:272:5:187:-13.5801,0,-21.2349 dDocent_Contig_11733 20 . T C 2764.63 . AB=0.747899;ABP=66.5304;AC=3;AF=0.5;AN=6;AO=89;CIGAR=1X;DP=119;DPB=119;DPRA=0;EPP=196.271;EPPR=68.1545;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=3522;QR=1175;RO=30;RPL=0;RPP=196.271;RPPR=68.1545;RPR=89;RUN=1;SAF=89;SAP=196.271;SAR=0;SRF=30;SRP=68.1545;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:49:8,41:8:308:41:1605:-129.922,0,-13.3245 0/1:27:4,23:4:161:23:908:-73.9034,0,-6.74767 0/1:43:18,25:18:706:25:1009:-78.1602,0,-50.9163 dDocent_Contig_11734 9 . A C 40.6165 . AB=0.176471;ABP=18.4661;AC=1;AF=0.166667;AN=6;AO=4;CIGAR=2X;DP=39;DPB=39;DPRA=4.375;EPP=11.6962;EPPR=79.0118;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=158;QR=1328;RO=35;RPL=0;RPP=11.6962;RPPR=79.0118;RPR=4;RUN=1;SAF=4;SAP=11.6962;SAR=0;SRF=35;SRP=79.0118;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|0:4:4,0:4:155:0:0:0,-1.20412,-14.3247 0|1:17:14,3:14:544:3:118:-5.88538,0,-44.1859 0|0:18:17,1:17:629:1:40:0,-1.42286,-52.9391 dDocent_Contig_11735 15 . A G 291.965 . AB=0.160584;ABP=140.098;AC=3;AF=0.5;AN=6;AO=22;CIGAR=1X;DP=137;DPB=137;DPRA=0;EPP=50.7827;EPPR=252.73;GTI=0;LEN=1;MEANALT=1;MQM=56.8182;MQMR=46.6348;NS=3;NUMALT=1;ODDS=0;PAIRED=0.863636;PAIREDR=0.591304;PAO=0;PQA=0;PQR=0;PRO=0;QA=836;QR=4570;RO=115;RPL=0;RPP=50.7827;RPPR=252.73;RPR=22;RUN=1;SAF=22;SAP=50.7827;SAR=0;SRF=115;SRP=252.73;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:79:66,13:66:2627:13:494:-20.9078,0,-183.515 0/1:20:16,4:16:629:4:144:-7.05372,0,-47.6723 0/1:38:33,5:33:1314:5:198:-6.75794,0,-84.8379 dDocent_Contig_11736 15 . C T 621.865 . AB=0.0816327;ABP=226.495;AC=1;AF=0.166667;AN=6;AO=12;CIGAR=3M1X3M;DP=175;DPB=175;DPRA=0;EPP=29.068;EPPR=79.0118;GTI=0;LEN=1;MEANALT=6.5;MQM=41.3333;MQMR=60;NS=3;NUMALT=5;ODDS=0;PAIRED=0;PAIREDR=0.771429;PAO=0;PQA=0;PQR=0;PRO=0;QA=371;QR=1380;RO=35;RPL=0;RPP=29.068;RPPR=79.0118;RPR=12;RUN=1;SAF=12;SAP=29.068;SAR=0;SRF=35;SRP=79.0118;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|0:64:11,0,5,41,3,1:11:431:0,5,41,3,1:0,186,684,65,41:-34.9573,-38.2686,-73.7509,-31.1654,-66.6521,-65.147,0,-35.5407,-28.4673,-23.1984,-33.8734,-69.3583,-62.2595,-31.1613,-68.4552,-34.8795,-70.3633,-63.2642,-32.1508,-65.9706,-70.0623 0|0:28:4,0,2,18,0,3:4:156:0,2,18,0,3:0,77,261,0,123:-11.9498,-13.1539,-26.0078,-9.45743,-22.3146,-21.7125,0,-12.8392,-9.18035,-7.42071,-13.1539,-26.0078,-22.3146,-12.8392,-26.0078,-2.96804,-15.831,-12.1353,-2.66811,-15.831,-14.9279 0|1:83:20,12,0,30,9,5:20:793:12,0,30,9,5:374,0,435,306,205:-20.8017,0,-61.7153,-26.8223,-65.3277,-92.1387,-4.69449,-43.2101,-69.9993,-60.9684,-3.0734,-41.5868,-68.3998,-46.272,-65.6905,-9.88552,-48.3959,-75.2089,-53.0722,-51.4682,-73.7037 dDocent_Contig_11737 1 . N A 294.416 . AB=0;ABP=0;AC=6;AF=1;AN=6;AO=10;CIGAR=1X;DP=10;DPB=10;DPRA=0;EPP=24.725;EPPR=0;GTI=0;LEN=1;MEANALT=1;MQM=37.6;MQMR=0;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=352;QR=0;RO=0;RPL=0;RPP=24.725;RPPR=0;RPR=10;RUN=1;SAF=10;SAP=24.725;SAR=0;SRF=0;SRP=0;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 1/1:4:0,4:0:0:4:137:-11.7095,-1.20412,0 1/1:4:0,4:0:0:4:141:-10.4348,-1.20412,0 1/1:2:0,2:0:0:2:74:-6.69483,-0.60206,0 dDocent_Contig_11738 128 . T G 938.698 . AB=0.481013;ABP=3.25768;AC=3;AF=0.5;AN=6;AO=38;CIGAR=1X;DP=79;DPB=79;DPRA=0;EPP=85.5263;EPPR=92.0407;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=1358;QR=1379;RO=41;RPL=0;RPP=85.5263;RPPR=92.0407;RPR=38;RUN=1;SAF=0;SAP=85.5263;SAR=38;SRF=0;SRP=92.0407;SRR=41;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:42:17,25:17:560:25:893:-68.0432,0,-38.0655 0/1:5:3,2:3:106:2:58:-4.00274,0,-8.38401 0/1:32:21,11:21:713:11:407:-27.3453,0,-54.8515 dDocent_Contig_11739 36 . G A 4009.45 . AB=0.0517598;ABP=845.924;AC=0;AF=0;AN=6;AO=25;CIGAR=1X2M1X;DP=483;DPB=483;DPRA=0;EPP=57.2971;EPPR=643.595;GTI=0;LEN=1;MEANALT=3.33333;MQM=60;MQMR=60;NS=3;NUMALT=2;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=974;QR=11318;RO=295;RPL=0;RPP=57.2971;RPPR=643.595;RPR=25;RUN=1;SAF=25;SAP=57.2971;SAR=0;SRF=295;SRP=643.595;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|0:278:162,16,95:162:6243:16,95:626,3833:-267.201,-264.503,-772.287,0,-461.138,-484.007 0|0:56:41,4,11:41:1581:4,11:151,430:-23.0131,-22.9837,-151.602,0,-117.459,-126.522 0|0:149:92,5,45:92:3494:5,45:197,1752:-116.254,-127.741,-412.729,0,-270.285,-272.946 dDocent_Contig_11740 98 . N A 298.505 . AB=0;ABP=0;AC=4;AF=1;AN=4;AO=10;CIGAR=1X;DP=10;DPB=10;DPRA=0;EPP=24.725;EPPR=0;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=0;NS=2;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=321;QR=0;RO=0;RPL=10;RPP=24.725;RPPR=0;RPR=0;RUN=1;SAF=10;SAP=24.725;SAR=0;SRF=0;SRP=0;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL ./.:.:.:.:.:.:.:. 1/1:1:0,1:0:0:1:35:-3.49863,-0.30103,0 1/1:9:0,9:0:0:9:286:-26.0496,-2.70927,0 dDocent_Contig_11741 18 . A G 93.2113 . AB=0.285714;ABP=8.59409;AC=1;AF=0.166667;AN=6;AO=4;CIGAR=1X;DP=33;DPB=33;DPRA=1.47368;EPP=11.6962;EPPR=65.983;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=0.793103;PAO=0;PQA=0;PQR=0;PRO=0;QA=163;QR=1159;RO=29;RPL=0;RPP=11.6962;RPPR=65.983;RPR=4;RUN=1;SAF=4;SAP=11.6962;SAR=0;SRF=29;SRP=65.983;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:14:10,4:10:399:4:163:-10.844,0,-32.0538 0/0:10:10,0:10:402:0:0:0,-3.0103,-36.5399 0/0:9:9,0:9:358:0:0:0,-2.70927,-32.5821 dDocent_Contig_11742 19 . T C 69.6425 . AB=0.375;ABP=4.09604;AC=1;AF=0.25;AN=4;AO=3;CIGAR=1X;DP=26;DPB=26;DPRA=0.444444;EPP=9.52472;EPPR=52.9542;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=2;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=122;QR=901;RO=23;RPL=0;RPP=9.52472;RPPR=52.9542;RPR=3;RUN=1;SAF=3;SAP=9.52472;SAR=0;SRF=23;SRP=52.9542;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:18:18,0:18:710:0:0:0,-5.41854,-64.2317 ./.:.:.:.:.:.:.:. 0/1:8:5,3:5:191:3:122:-8.96425,0,-15.1492 dDocent_Contig_11743 20 . G T 200.583 . AB=0.160494;ABP=84.1054;AC=3;AF=0.5;AN=6;AO=13;CIGAR=1X;DP=81;DPB=81;DPRA=0;EPP=31.2394;EPPR=150.67;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=0.985294;PAO=0;PQA=0;PQR=0;PRO=0;QA=527;QR=2686;RO=68;RPL=0;RPP=31.2394;RPPR=150.67;RPR=13;RUN=1;SAF=13;SAP=31.2394;SAR=0;SRF=68;SRP=150.67;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:36:33,3:33:1298:3:123:-0.627708,0,-106.239 0/1:23:17,6:17:681:6:245:-15.5058,0,-54.6958 0/1:22:18,4:18:707:4:159:-8.06929,0,-57.3346 dDocent_Contig_11744 129 . G A 83.8522 . AB=0.192308;ABP=24.391;AC=2;AF=0.333333;AN=6;AO=6;CIGAR=1X;DP=31;DPB=31;DPRA=0;EPP=16.0391;EPPR=57.2971;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=0.96;PAO=0;PQA=0;PQR=0;PRO=0;QA=208;QR=942;RO=25;RPL=0;RPP=16.0391;RPPR=57.2971;RPR=6;RUN=1;SAF=0;SAP=16.0391;SAR=6;SRF=0;SRP=57.2971;SRR=25;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:15:11,4:11:416:4:156:-9.90167,0,-33.2713 0/1:11:10,1:10:371:1:39:-0.585235,0,-30.427 0/0:5:4,1:4:155:1:13:0,-0.205158,-13.0254 dDocent_Contig_11745 7 . C T 31.7198 . AB=0.25;ABP=7.35324;AC=1;AF=0.166667;AN=6;AO=2;CIGAR=2X;DP=18;DPB=18;DPRA=1.6;EPP=7.35324;EPPR=37.7539;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=8.67362e-19;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=78;QR=608;RO=16;RPL=0;RPP=7.35324;RPPR=37.7539;RPR=2;RUN=1;SAF=2;SAP=7.35324;SAR=0;SRF=16;SRP=37.7539;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|0:8:8,0:8:310:0:0:0,-2.40824,-28.2637 0|1:8:6,2:6:223:2:78:-4.99523,0,-18.0199 0|0:2:2,0:2:75:0:0:0,-0.60206,-7.12034 dDocent_Contig_11746 9 . A G 237.271 . AB=0.333333;ABP=10.9724;AC=3;AF=0.5;AN=6;AO=11;CIGAR=1X;DP=33;DPB=33;DPRA=0;EPP=26.8965;EPPR=50.7827;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=418;QR=828;RO=22;RPL=0;RPP=26.8965;RPPR=50.7827;RPR=11;RUN=1;SAF=11;SAP=26.8965;SAR=0;SRF=22;SRP=50.7827;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:10:6,4:6:217:4:151:-10.9467,0,-16.8699 0/1:16:10,6:10:377:6:230:-16.2503,0,-29.4644 0/1:7:6,1:6:234:1:37:-1.59062,0,-19.3239 dDocent_Contig_11747 150 . T C 67.476 . AB=0;ABP=0;AC=0;AF=0;AN=6;AO=2;CIGAR=1X3M4D3M2X3M5D4M1X3M;DP=32;DPB=31.4138;DPRA=3.6;EPP=7.35324;EPPR=55.1256;GTI=0;LEN=1;MEANALT=4;MQM=7;MQMR=60;NS=3;NUMALT=2;ODDS=0;PAIRED=0;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=14;QR=894;RO=24;RPL=2;RPP=7.35324;RPPR=55.1256;RPR=0;RUN=1;SAF=0;SAP=7.35324;SAR=2;SRF=0;SRP=55.1256;SRR=24;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|0:18:13,2,1:13:488:2,1:14,41:0,-3.80128,-43.2704,-0.470362,-40.4847,-40.3459 0|0:5:5,0,0:5:183:0,0:0,0:0,-1.50515,-16.8265,-1.50515,-16.8265,-16.8265 0|0:9:6,0,3:6:223:0,3:0,121:-8.57093,-10.3771,-28.6072,0,-18.6225,-17.7194 dDocent_Contig_11748 11 . A T 3021.03 . AB=0.690323;ABP=51.7774;AC=3;AF=0.5;AN=6;AO=107;CIGAR=1M1X;DP=155;DPB=155;DPRA=0;EPP=235.358;EPPR=105.07;GTI=0;LEN=1;MEANALT=1.33333;MQM=59.3178;MQMR=60;NS=3;NUMALT=1;ODDS=1.38778e-17;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=3930;QR=1831;RO=47;RPL=0;RPP=235.358;RPPR=105.07;RPR=107;RUN=1;SAF=107;SAP=235.358;SAR=0;SRF=47;SRP=105.07;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|1:64:20,44:20:796:44:1634:-127.961,0,-52.6938 0|1:48:15,33:15:572:33:1221:-95.7088,0,-37.3645 0|1:43:12,30:12:463:30:1075:-83.9564,0,-28.974 dDocent_Contig_11749 9 . A G 2154.38 . AB=0.791209;ABP=70.0396;AC=3;AF=0.5;AN=6;AO=72;CIGAR=1X;DP=91;DPB=91;DPRA=0;EPP=159.356;EPPR=44.2683;GTI=0;LEN=1;MEANALT=1;MQM=59.9861;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=0.958333;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=2749;QR=732;RO=19;RPL=0;RPP=159.356;RPPR=44.2683;RPR=72;RUN=1;SAF=72;SAP=159.356;SAR=0;SRF=19;SRP=44.2683;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:51:9,42:9:347:42:1613:-130.078,0,-16.2367 0/1:8:2,6:2:77:6:233:-18.9318,0,-4.9009 0/1:32:8,24:8:308:24:903:-71.9506,0,-18.4493 dDocent_Contig_11751 53 . A T 35.6624 . AB=0.285714;ABP=5.80219;AC=1;AF=0.166667;AN=6;AO=2;CIGAR=1X;DP=58;DPB=58;DPRA=0.27451;EPP=7.35324;EPPR=124.613;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=0;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=79;QR=2197;RO=56;RPL=2;RPP=7.35324;RPPR=124.613;RPR=0;RUN=1;SAF=2;SAP=7.35324;SAR=0;SRF=56;SRP=124.613;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:39:39,0:39:1541:0:0:0,-11.7402,-138.931 0/1:7:5,2:5:197:2:79:-5.39003,0,-15.9983 0/0:12:12,0:12:459:0:0:0,-3.61236,-41.6487 dDocent_Contig_11752 10 . G T 70.7086 . AB=0.122807;ABP=73.4498;AC=1;AF=0.166667;AN=6;AO=7;CIGAR=1X;DP=79;DPB=79;DPRA=5.18182;EPP=18.2106;EPPR=159.356;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=282;QR=2871;RO=72;RPL=0;RPP=18.2106;RPPR=159.356;RPR=7;RUN=1;SAF=7;SAP=18.2106;SAR=0;SRF=72;SRP=159.356;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:57:50,7:50:1998:7:282:-8.59338,0,-162.855 0/0:2:2,0:2:78:0:0:0,-0.60206,-7.4033 0/0:20:20,0:20:795:0:0:0,-6.0206,-71.8675 dDocent_Contig_11753 24 . T A 138.589 . AB=0.259259;ABP=16.6021;AC=3;AF=0.5;AN=6;AO=7;CIGAR=1X2M;DP=27;DPB=27;DPRA=0;EPP=18.2106;EPPR=42.0968;GTI=0;LEN=1;MEANALT=1.33333;MQM=60;MQMR=60;NS=3;NUMALT=2;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=276;QR=710;RO=18;RPL=0;RPP=18.2106;RPPR=42.0968;RPR=7;RUN=1;SAF=7;SAP=18.2106;SAR=0;SRF=18;SRP=42.0968;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|1:11:10,0,1:10:395:0,1:0,41:-0.783237,-3.79354,-36.2837,0,-32.8983,-32.5973 0|1:7:2,2,3:2:80:2,3:77,121:-9.3831,-3.67033,-9.65691,0,-0.282742,-5.69431 0|1:9:6,0,3:6:235:0,3:0,114:-7.92165,-9.72783,-29.0592,0,-19.7149,-18.8118 dDocent_Contig_11754 21 . T C 5712.52 . AB=0.842466;ABP=151.741;AC=4;AF=0.666667;AN=6;AO=174;CIGAR=1X;DP=198;DPB=198;DPRA=0;EPP=380.846;EPPR=55.1256;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=6915;QR=951;RO=24;RPL=0;RPP=380.846;RPPR=55.1256;RPR=174;RUN=1;SAF=174;SAP=380.846;SAR=0;SRF=24;SRP=55.1256;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:103:10,93:10:388:93:3692:-301.281,0,-4.26342 0/1:43:13,30:13:522:30:1192:-94.6039,0,-34.3818 1/1:52:1,51:1:41:51:2031:-178.889,-11.559,0 dDocent_Contig_11755 7 . C A 1884.81 . AB=0.115385;ABP=270.268;AC=4;AF=0.666667;AN=6;AO=24;CIGAR=1X8M;DP=208;DPB=211.778;DPRA=0;EPP=55.1256;EPPR=152.842;GTI=0;LEN=1;MEANALT=4.33333;MQM=60;MQMR=60;NS=3;NUMALT=4;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=929;QR=2672;RO=69;RPL=0;RPP=55.1256;RPPR=152.842;RPR=24;RUN=1;SAF=24;SAP=55.1256;SAR=0;SRF=69;SRP=152.842;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|1:139:47,44,13,20,15:47:1821:44,13,20,15:1722,511,465,579:-126.213,0,-136.388,-98.3225,-107.594,-244.023,-109.154,-118.424,-216.717,-252.729,-92.8029,-102.075,-200.381,-211.199,-237.901 1|1:26:0,12,3,5,5:0:0:12,3,5,5:473,119,105,195:-54.9702,-16.0718,-12.4594,-45.1681,-6.25312,-44.265,-48.4127,-9.54783,-38.6157,-46.9075,-38.9314,0,-29.1261,-32.3837,-37.4262 0|1:43:22,2,6,9,4:22:851:2,6,9,4:78,236,224,155:-12.8202,-13.0785,-82.4135,0,-63.5951,-68.1485,-3.95379,-67.4916,-54.4343,-71.1396,-6.69282,-70.2776,-57.2157,-61.1148,-75.4328 dDocent_Contig_11757 21 . C T 141.696 . AB=0.173077;ABP=51.2838;AC=2;AF=0.333333;AN=6;AO=9;CIGAR=1X;DP=63;DPB=63;DPRA=2.36364;EPP=22.5536;EPPR=111.745;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=0.888889;PAIREDR=0.962963;PAO=0;PQA=0;PQR=0;PRO=0;QA=362;QR=2133;RO=54;RPL=0;RPP=22.5536;RPPR=120.27;RPR=9;RUN=1;SAF=9;SAP=22.5536;SAR=0;SRF=53;SRP=111.745;SRR=1;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:30:26,4:26:1054:4:162:-5.93606,0,-86.1172 0/0:11:11,0:11:421:0:0:0,-3.31133,-38.2349 0/1:22:17,5:17:658:5:200:-11.7564,0,-52.9139 dDocent_Contig_11758 78 . C T 116.942 . AB=0.2;ABP=38.1882;AC=2;AF=0.333333;AN=6;AO=9;CIGAR=2X;DP=47;DPB=47;DPRA=11.25;EPP=22.5536;EPPR=85.5263;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=312;QR=1292;RO=38;RPL=9;RPP=22.5536;RPPR=85.5263;RPR=0;RUN=1;SAF=9;SAP=22.5536;SAR=0;SRF=38;SRP=85.5263;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|1:17:14,3:14:487:3:104:-4.58558,0,-39.0437 0|0:2:2,0:2:59:0:0:0,-0.60206,-5.60359 0|1:28:22,6:22:746:6:208:-10.6308,0,-59.0268 dDocent_Contig_11759 15 . T C 1206.51 . AB=0.443299;ABP=5.71904;AC=3;AF=0.5;AN=6;AO=43;CIGAR=1X;DP=97;DPB=97;DPRA=0;EPP=96.3836;EPPR=120.27;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=0.72093;PAIREDR=0.888889;PAO=0;PQA=0;PQR=0;PRO=0;QA=1715;QR=2141;RO=54;RPL=0;RPP=96.3836;RPPR=120.27;RPR=43;RUN=1;SAF=43;SAP=96.3836;SAR=0;SRF=54;SRP=120.27;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:55:27,28:27:1073:28:1112:-83.8079,0,-80.3002 0/1:19:9,10:9:361:10:403:-30.9103,0,-27.1345 0/1:23:18,5:18:707:5:200:-11.4553,0,-57.029 dDocent_Contig_11760 31 . T G 351.435 . AB=0.3125;ABP=17.6677;AC=3;AF=0.5;AN=6;AO=15;CIGAR=1X;DP=48;DPB=48;DPRA=0;EPP=35.5824;EPPR=74.6689;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=0.133333;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=599;QR=1334;RO=33;RPL=0;RPP=35.5824;RPPR=74.6689;RPR=15;RUN=1;SAF=15;SAP=35.5824;SAR=0;SRF=33;SRP=74.6689;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:31:22,9:22:886:9:367:-24.0633,0,-70.7163 0/1:6:5,1:5:205:1:41:-2.28839,0,-17.0288 0/1:11:6,5:6:243:5:191:-14.2459,0,-18.9368 dDocent_Contig_11761 73 . G A 251.353 . AB=0.434783;ABP=3.86001;AC=2;AF=0.333333;AN=6;AO=10;CIGAR=1X;DP=29;DPB=29;DPRA=1.91667;EPP=24.725;EPPR=44.2683;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=387;QR=723;RO=19;RPL=10;RPP=24.725;RPPR=44.2683;RPR=0;RUN=1;SAF=10;SAP=24.725;SAR=0;SRF=19;SRP=44.2683;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:12:10,2:10:388:2:79:-3.88527,0,-31.6643 0/0:6:6,0:6:218:0:0:0,-1.80618,-19.9717 0/1:11:3,8:3:117:8:308:-24.771,0,-7.59905 dDocent_Contig_11762 8 . A G 216.462 . AB=0.22449;ABP=35.3165;AC=2;AF=0.333333;AN=6;AO=12;CIGAR=1X;DP=84;DPB=84;DPRA=0;EPP=29.068;EPPR=159.356;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=3.46945e-18;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=464;QR=2754;RO=72;RPL=0;RPP=29.068;RPPR=159.356;RPR=12;RUN=1;SAF=12;SAP=29.068;SAR=0;SRF=72;SRP=159.356;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:35:34,1:34:1294:1:39:0,-6.63949,-112.852 0/1:22:20,2:20:765:2:78:-0.780813,0,-62.5552 0/1:27:18,9:18:695:9:347:-23.4615,0,-54.756 dDocent_Contig_11763 29 . T G 1197.01 . AB=0.39823;ABP=13.1759;AC=3;AF=0.5;AN=6;AO=45;CIGAR=1X;DP=113;DPB=113;DPRA=0;EPP=100.727;EPPR=150.67;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=1758;QR=2718;RO=68;RPL=0;RPP=100.727;RPPR=150.67;RPR=45;RUN=1;SAF=45;SAP=100.727;SAR=0;SRF=68;SRP=150.67;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:76:44,32:44:1769:32:1239:-88.9037,0,-136.542 0/1:8:4,4:4:163:4:161:-12.4672,0,-12.6502 0/1:29:20,9:20:786:9:358:-23.8532,0,-62.321 dDocent_Contig_11764 98 . N C 371.478 . AB=0;ABP=0;AC=6;AF=1;AN=6;AO=12;CIGAR=1X;DP=12;DPB=12;DPRA=0;EPP=29.068;EPPR=0;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=0;NS=3;NUMALT=1;ODDS=1.69407e-21;PAIRED=1;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=395;QR=0;RO=0;RPL=12;RPP=29.068;RPPR=0;RPR=0;RUN=1;SAF=12;SAP=29.068;SAR=0;SRF=0;SRP=0;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 1/1:1:0,1:0:0:1:35:-3.49863,-0.30103,0 1/1:5:0,5:0:0:5:171:-15.7266,-1.50515,0 1/1:6:0,6:0:0:6:189:-17.3199,-1.80618,0 dDocent_Contig_11766 17 . C A 35.5117 . AB=0.15;ABP=24.2907;AC=1;AF=0.166667;AN=6;AO=3;CIGAR=1X;DP=41;DPB=41;DPRA=1.90476;EPP=9.52472;EPPR=85.5263;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=119;QR=1532;RO=38;RPL=0;RPP=9.52472;RPPR=85.5263;RPR=3;RUN=1;SAF=3;SAP=9.52472;SAR=0;SRF=38;SRP=85.5263;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:20:17,3:17:682:3:119:-5.0739,0,-55.6892 0/0:6:6,0:6:243:0:0:0,-1.80618,-22.248 0/0:15:15,0:15:607:0:0:0,-4.51545,-54.9657 dDocent_Contig_11767 9 . A T 823.891 . AB=0.0746269;ABP=108.311;AC=0;AF=0;AN=6;AO=5;CIGAR=1X2M2X1M1X;DP=120;DPB=120;DPRA=0;EPP=13.8677;EPPR=141.985;GTI=0;LEN=1;MEANALT=5;MQM=60;MQMR=60;NS=3;NUMALT=3;ODDS=0;PAIRED=0;PAIREDR=0.359375;PAO=0;PQA=0;PQR=0;PRO=0;QA=189;QR=2506;RO=64;RPL=0;RPP=13.8677;RPPR=141.985;RPR=5;RUN=1;SAF=5;SAP=13.8677;SAR=0;SRF=64;SRP=141.985;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|0:67:34,5,9,15:34:1331:5,9,15:189,367,604:-39.5478,-34.297,-142.228,-19.5011,-113.453,-126.232,0,-93.9514,-79.1578,-104.924 0|0:30:16,0,2,10:16:627:0,2,10:0,81,401:-28.2235,-33.0399,-84.5955,-26.3601,-77.9157,-77.3136,0,-51.5537,-44.8733,-48.5434 0|0:23:14,0,0,8:14:548:0,0,8:0,0,298:-20.1407,-24.3551,-69.4246,-24.3551,-69.4246,-69.4246,0,-45.0434,-45.0434,-42.6351 dDocent_Contig_11768 11 . T C 3278.31 . AB=0.553846;ABP=7.92117;AC=3;AF=0.5;AN=6;AO=108;CIGAR=1X;DP=195;DPB=195;DPRA=0;EPP=237.529;EPPR=191.928;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=4341;QR=3495;RO=87;RPL=0;RPP=237.529;RPPR=191.928;RPR=108;RUN=1;SAF=108;SAP=237.529;SAR=0;SRF=87;SRP=191.928;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:140:64,76:64:2570:76:3068:-234.041,0,-189.281 0/1:9:1,8:1:41:8:307:-25.2743,0,-1.3853 0/1:46:22,24:22:884:24:966:-73.3905,0,-66.0216 dDocent_Contig_11769 10 . C T 206.32 . AB=0.173333;ABP=72.5264;AC=3;AF=0.5;AN=6;AO=13;CIGAR=1X;DP=75;DPB=75;DPRA=0;EPP=31.2394;EPPR=137.642;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=59.0323;NS=3;NUMALT=1;ODDS=3.46945e-18;PAIRED=0.923077;PAIREDR=0.983871;PAO=0;PQA=0;PQR=0;PRO=0;QA=512;QR=2205;RO=62;RPL=0;RPP=31.2394;RPPR=137.642;RPR=13;RUN=1;SAF=13;SAP=31.2394;SAR=0;SRF=62;SRP=137.642;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:41:33,8:33:1125:8:323:-17.0964,0,-89.1559 0/1:12:11,1:11:420:1:41:-0.482207,0,-34.5366 0/1:22:18,4:18:660:4:148:-7.05412,0,-52.8925 dDocent_Contig_11770 9 . A C 136.16 . AB=0.151899;ABP=86.1585;AC=3;AF=0.5;AN=6;AO=12;CIGAR=1X;DP=79;DPB=79;DPRA=0;EPP=29.068;EPPR=148.499;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=0.955224;PAO=0;PQA=0;PQR=0;PRO=0;QA=462;QR=2572;RO=67;RPL=0;RPP=29.068;RPPR=148.499;RPR=12;RUN=1;SAF=12;SAP=29.068;SAR=0;SRF=67;SRP=148.499;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:30:27,3:27:1046:3:117:-1.87948,0,-85.4167 0/1:13:9,4:9:347:4:154:-10.3201,0,-27.6763 0/1:36:31,5:31:1179:5:191:-6.72102,0,-95.5688 dDocent_Contig_11771 18 . G A 707.333 . AB=0.0394737;ABP=983.03;AC=0;AF=0;AN=6;AO=21;CIGAR=1X4M;DP=532;DPB=532;DPRA=0;EPP=48.6112;EPPR=834.684;GTI=0;LEN=1;MEANALT=7.66667;MQM=60;MQMR=58.7859;NS=3;NUMALT=3;ODDS=0;PAIRED=1;PAIREDR=0.924282;PAO=0;PQA=0;PQR=0;PRO=0;QA=826;QR=14864;RO=383;RPL=0;RPP=48.6112;RPPR=834.684;RPR=21;RUN=1;SAF=21;SAP=48.6112;SAR=0;SRF=383;SRP=834.684;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|0:275:197,19,38,5:197:7636:19,38,5:753,1489,201:-54.1239,-53.7478,-672.645,0,-564.936,-613.172,-96.8606,-661.8,-608.047,-719.97 0|0:112:84,8,9,5:84:3255:8,9,5:310,347,180:-1.2043,-2.2811,-266.859,0,-242.776,-264.274,-11.8069,-254.583,-252.299,-277.285 0|0:145:102,4,17,11:102:3973:4,17,11:154,667,445:-20.1096,-38.3126,-361.368,0,-311.752,-319.136,-14.1156,-325.88,-287.561,-335.071 dDocent_Contig_11772 35 . T C 1585.05 . AB=0.474576;ABP=3.67278;AC=3;AF=0.5;AN=6;AO=56;CIGAR=1X;DP=118;DPB=118;DPRA=0;EPP=124.613;EPPR=137.642;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=0.875;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=2206;QR=2441;RO=62;RPL=0;RPP=124.613;RPPR=137.642;RPR=56;RUN=1;SAF=56;SAP=124.613;SAR=0;SRF=62;SRP=137.642;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:79:46,33:46:1828:33:1305:-93.9391,0,-140.956 0/1:27:14,13:14:548:13:514:-38.4791,0,-41.5312 0/1:12:2,10:2:65:10:387:-31.5714,0,-2.55921 dDocent_Contig_11773 23 . G C 3386.62 . AB=0.185022;ABP=198.625;AC=1;AF=0.166667;AN=6;AO=42;CIGAR=2X1M;DP=227;DPB=227;DPRA=0;EPP=94.2121;EPPR=131.127;GTI=0;LEN=1;MEANALT=4.33333;MQM=60;MQMR=60;NS=3;NUMALT=3;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=1647;QR=2189;RO=59;RPL=0;RPP=94.2121;RPPR=131.127;RPR=42;RUN=1;SAF=42;SAP=94.2121;SAR=0;SRF=59;SRP=131.127;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|0:130:33,0,20,72:33:1248:0,20,72:0,771,2737:-214.473,-224.407,-326.712,-161.101,-263.406,-257.385,0,-102.307,-38.9978,-80.6329 0|0:23:10,1,5,6:10:363:1,5,6:28,200,244:-17.1271,-17.9281,-47.2467,-3.65816,-31.0679,-31.7759,0,-27.4132,-13.1389,-27.82 1|0:74:16,4,17,34:16:578:4,17,34:146,676,1325:-112.585,-105.476,-151.433,-61.7436,-96.9789,-103.787,-8.51136,-43.7421,0,-45.4325 dDocent_Contig_11774 8 . A G 360.218 . AB=0.518519;ABP=3.09072;AC=2;AF=0.333333;AN=6;AO=14;CIGAR=1X;DP=36;DPB=36;DPRA=1.5;EPP=33.4109;EPPR=50.7827;GTI=0;LEN=1;MEANALT=1;MQM=57.2857;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=0.428571;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=537;QR=824;RO=22;RPL=0;RPP=33.4109;RPPR=50.7827;RPR=14;RUN=1;SAF=14;SAP=33.4109;SAR=0;SRF=22;SRP=50.7827;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:14:6,8:6:219:8:309:-23.9585,0,-15.8477 0/1:13:7,6:7:267:6:228:-15.5861,0,-20.4784 0/0:9:9,0:9:338:0:0:0,-2.70927,-30.7733 dDocent_Contig_11775 36 . C T 53.3417 . AB=0.214286;ABP=12.937;AC=1;AF=0.166667;AN=6;AO=3;CIGAR=1X;DP=50;DPB=50;DPRA=0.777778;EPP=9.52472;EPPR=105.07;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=122;QR=1871;RO=47;RPL=0;RPP=9.52472;RPPR=105.07;RPR=3;RUN=1;SAF=3;SAP=9.52472;SAR=0;SRF=47;SRP=105.07;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:21:21,0:21:837:0:0:0,-6.32163,-75.6428 0/0:15:15,0:15:588:0:0:0,-4.51545,-53.2587 0/1:14:11,3:11:446:3:122:-7.15807,0,-36.2818 dDocent_Contig_11777 117 . G A 46.617 . AB=0.272727;ABP=7.94546;AC=1;AF=0.166667;AN=6;AO=3;CIGAR=1X;DP=39;DPB=39;DPRA=0.785714;EPP=9.52472;EPPR=81.1833;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=105;QR=1232;RO=36;RPL=0;RPP=9.52472;RPPR=81.1833;RPR=3;RUN=1;SAF=0;SAP=9.52472;SAR=3;SRF=0;SRP=81.1833;SRR=36;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:27:27,0:27:918:0:0:0,-8.12781,-82.93 0/0:1:1,0:1:35:0:0:0,-0.30103,-3.49863 0/1:11:8,3:8:279:3:105:-6.48483,0,-22.1377 dDocent_Contig_11778 20 . T C 6501.51 . AB=0.171271;ABP=342.792;AC=5;AF=0.833333;AN=6;AO=62;CIGAR=1X4M1X7M;DP=362;DPB=350.923;DPRA=0;EPP=137.642;EPPR=122.441;GTI=0;LEN=1;MEANALT=9.33333;MQM=60;MQMR=60;NS=3;NUMALT=4;ODDS=0;PAIRED=0.725806;PAIREDR=0.945455;PAO=0;PQA=0;PQR=0;PRO=0;QA=2415;QR=2163;RO=55;RPL=0;RPP=137.642;RPPR=122.441;RPR=62;RUN=1;SAF=62;SAP=137.642;SAR=0;SRF=55;SRP=122.441;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|1:168:35,0,5,94,13:35:1377:0,5,94,13:0,196,3661,472:-290.361,-300.897,-414.169,-284.779,-398.051,-396.546,0,-113.289,-97.1698,-84.9919,-262.366,-375.637,-359.52,-74.7576,-371.724 1|1:76:8,0,0,46,15:8:308:0,0,46,15:0,0,1785,592:-167.677,-170.085,-195.372,-170.085,-195.372,-195.372,-23.4306,-48.7177,-48.7177,-34.8703,-121.374,-146.662,-146.662,0,-142.146 1|1:118:12,9,11,40,34:12:478:9,11,40,34:351,440,1573,1351:-197.637,-172.397,-209.051,-166.677,-177.189,-202.729,-71.8618,-82.3741,-76.6543,-99.1845,-90.025,-100.537,-94.8173,0,-119.154 dDocent_Contig_11779 187 . T C 187.332 . AB=0.290323;ABP=14.8483;AC=3;AF=0.5;AN=6;AO=9;CIGAR=1X;DP=31;DPB=31;DPRA=0;EPP=22.5536;EPPR=50.7827;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=360;QR=877;RO=22;RPL=9;RPP=22.5536;RPPR=50.7827;RPR=0;RUN=1;SAF=0;SAP=22.5536;SAR=9;SRF=0;SRP=50.7827;SRR=22;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:16:12,4:12:484:4:161:-10.059,0,-39.0951 0/1:11:7,4:7:276:4:158:-11.2884,0,-21.8962 0/1:4:3,1:3:117:1:41:-2.89045,0,-9.70558 dDocent_Contig_11780 23 . C T 45.1848 . AB=0.125;ABP=61.6401;AC=2;AF=0.333333;AN=6;AO=6;CIGAR=1X;DP=56;DPB=56;DPRA=3;EPP=16.0391;EPPR=111.584;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=241;QR=1983;RO=50;RPL=0;RPP=16.0391;RPPR=111.584;RPR=6;RUN=1;SAF=6;SAP=16.0391;SAR=0;SRF=50;SRP=111.584;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:16:14,2:14:561:2:80:-2.7751,0,-46.0127 0/1:32:28,4:28:1100:4:161:-5.24252,0,-89.6559 0/0:8:8,0:8:322:0:0:0,-2.40824,-29.3483 dDocent_Contig_11781 20 . C T 269.657 . AB=0.163462;ABP=105.32;AC=2;AF=0.333333;AN=6;AO=18;CIGAR=1X;DP=151;DPB=151;DPRA=0;EPP=42.0968;EPPR=291.816;GTI=0;LEN=1;MEANALT=1;MQM=59.2222;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=0.222222;PAIREDR=0.609023;PAO=0;PQA=0;PQR=0;PRO=0;QA=717;QR=5302;RO=133;RPL=0;RPP=42.0968;RPPR=291.816;RPR=18;RUN=1;SAF=18;SAP=42.0968;SAR=0;SRF=133;SRP=291.816;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:53:46,7:46:1826:7:285:-10.0696,0,-148.593 0/1:51:41,10:41:1621:10:394:-20.4189,0,-130.774 0/0:47:46,1:46:1855:1:38:0,-10.3511,-163.35 dDocent_Contig_11782 15 . T C 95.1597 . AB=0.25;ABP=13.8677;AC=2;AF=0.333333;AN=6;AO=5;CIGAR=1X;DP=33;DPB=33;DPRA=0.769231;EPP=13.8677;EPPR=61.6401;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=1.73472e-18;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=203;QR=1019;RO=27;RPL=0;RPP=13.8677;RPPR=61.6401;RPR=5;RUN=1;SAF=5;SAP=13.8677;SAR=0;SRF=27;SRP=61.6401;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:12:10,2:10:374:2:81:-4.07337,0,-30.3959 0/0:13:12,0:12:457:0:0:0,-3.61236,-41.355 0/1:8:5,3:5:188:3:122:-8.96425,0,-14.8753 dDocent_Contig_11784 15 . G T 31.5295 . AB=0.2;ABP=10.8276;AC=1;AF=0.166667;AN=6;AO=2;CIGAR=1X;DP=32;DPB=32;DPRA=0.909091;EPP=7.35324;EPPR=68.1545;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=0.933333;PAO=0;PQA=0;PQR=0;PRO=0;QA=81;QR=1189;RO=30;RPL=0;RPP=7.35324;RPPR=68.1545;RPR=2;RUN=1;SAF=2;SAP=7.35324;SAR=0;SRF=30;SRP=68.1545;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:10:8,2:8:310:2:81:-4.67543,0,-25.2477 0/0:4:4,0:4:160:0:0:0,-1.20412,-14.7834 0/0:18:18,0:18:719:0:0:0,-5.41854,-65.0334 dDocent_Contig_11785 9 . A G 485.911 . AB=0.0714286;ABP=47.6806;AC=0;AF=0;AN=6;AO=2;CIGAR=1M4D2M1X1M3I3M1X2M1X1M;DP=73;DPB=70.8235;DPRA=0;EPP=7.35324;EPPR=72.7387;GTI=0;LEN=1;MEANALT=5;MQM=21;MQMR=60;NS=3;NUMALT=6;ODDS=0;PAIRED=0;PAIREDR=0.944444;PAO=0;PQA=0;PQR=0;PRO=0;QA=42;QR=1394;RO=36;RPL=0;RPP=7.35324;RPPR=81.1833;RPR=2;RUN=1;SAF=2;SAP=7.35324;SAR=0;SRF=35;SRP=72.7387;SRR=1;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|0:36:18,2,3,0,11,0,1:18:696:2,3,0,11,0,1:56,90,0,403,0,23:-27.6048,-29.1341,-85.7342,-26.6466,-79.9597,-82.9465,-33.0233,-86.3363,-83.8496,-90.2272,0,-53.3953,-50.909,-57.2841,-53.9728,-33.0233,-86.3363,-83.8496,-90.2272,-57.2841,-90.2272,-31.5308,-84.8419,-82.3555,-88.7324,-55.7909,-88.7324,-88.4314 0|0:9:7,0,0,0,2,0,0:7:268:0,0,0,2,0,0:0,0,0,77,0,0:-4.59893,-6.70614,-28.6977,-6.70614,-28.6977,-28.6977,-6.70614,-28.6977,-28.6977,-28.6977,0,-22.3757,-22.3757,-22.3757,-21.7737,-6.70614,-28.6977,-28.6977,-28.6977,-22.3757,-28.6977,-6.70614,-28.6977,-28.6977,-28.6977,-22.3757,-28.6977,-28.6977 0|0:28:11,0,0,3,8,2,3:11:430:0,0,3,8,2,3:0,0,62,306,42,46:-21.9099,-25.2213,-60.6249,-25.2213,-60.6249,-60.6249,-21.3674,-56.7698,-56.7698,-55.8667,0,-35.486,-35.486,-31.6332,-33.0778,-22.5923,-57.9957,-57.9957,-54.1432,-32.8579,-57.3936,-22.7993,-58.1968,-58.1968,-54.3468,-33.0631,-55.5707,-57.2937 dDocent_Contig_11788 9 . A G 339.339 . AB=0.253731;ABP=38.3048;AC=3;AF=0.5;AN=6;AO=17;CIGAR=1X;DP=67;DPB=67;DPRA=0;EPP=39.9253;EPPR=111.584;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=0.705882;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=650;QR=1914;RO=50;RPL=0;RPP=39.9253;RPPR=111.584;RPR=17;RUN=1;SAF=17;SAP=39.9253;SAR=0;SRF=50;SRP=111.584;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:44:31,13:31:1181:13:494:-31.5587,0,-93.3403 0/1:2:1,1:1:39:1:39:-3.2945,0,-3.2945 0/1:21:18,3:18:694:3:117:-4.58875,0,-56.4723 dDocent_Contig_11790 18 . G A 541.245 . AB=0.277108;ABP=38.8265;AC=3;AF=0.5;AN=6;AO=23;CIGAR=1X;DP=83;DPB=83;DPRA=0;EPP=52.9542;EPPR=133.299;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=0.966667;PAO=0;PQA=0;PQR=0;PRO=0;QA=928;QR=2333;RO=60;RPL=0;RPP=52.9542;RPPR=133.299;RPR=23;RUN=1;SAF=23;SAP=52.9542;SAR=0;SRF=60;SRP=133.299;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:45:30,15:30:1170:15:605:-41.2424,0,-92.0238 0/1:24:19,5:19:720:5:200:-11.1546,0,-57.8882 0/1:14:11,3:11:443:3:123:-7.25037,0,-36.0081 dDocent_Contig_11792 40 . C T 79.9634 . AB=0.75;ABP=5.18177;AC=1;AF=0.166667;AN=6;AO=3;CIGAR=1X;DP=25;DPB=25;DPRA=0.380952;EPP=9.52472;EPPR=50.7827;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=118;QR=872;RO=22;RPL=0;RPP=9.52472;RPPR=50.7827;RPR=3;RUN=1;SAF=3;SAP=9.52472;SAR=0;SRF=22;SRP=50.7827;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:13:13,0:13:507:0:0:0,-3.91339,-45.9701 0/0:8:8,0:8:325:0:0:0,-2.40824,-29.6191 0/1:4:1,3:1:40:3:118:-9.79746,0,-2.79156 dDocent_Contig_11794 159 . G T 175.913 . AB=0.357143;ABP=5.49198;AC=3;AF=0.5;AN=6;AO=6;CIGAR=4M1X6M;DP=27;DPB=26.4545;DPRA=0;EPP=16.0391;EPPR=44.2683;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=2;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=240;QR=741;RO=19;RPL=6;RPP=16.0391;RPPR=44.2683;RPR=0;RUN=1;SAF=0;SAP=16.0391;SAR=6;SRF=0;SRP=44.2683;SRR=19;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|1:14:9,0,5:9:356:0,5:0,199:-14.0741,-16.7834,-46.0808,0,-29.6941,-28.1889 0|0:12:10,2,0:10:385:2,0:69,0:-2.92725,0,-31.39,-5.93755,-31.9921,-37.5787 1|1:1:0,0,1:0:0:0,1:0,41:-4.09457,-4.09457,-4.09457,-0.30103,-0.30103,0 dDocent_Contig_11795 54 . C A 692.598 . AB=0.306818;ABP=31.5356;AC=2;AF=0.333333;AN=6;AO=38;CIGAR=1M1X2M;DP=255;DPB=251;DPRA=0;EPP=85.5263;EPPR=452.505;GTI=0;LEN=1;MEANALT=2;MQM=60;MQMR=60;NS=3;NUMALT=2;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=1507;QR=8147;RO=207;RPL=38;RPP=85.5263;RPPR=452.505;RPR=0;RUN=1;SAF=38;SAP=85.5263;SAR=0;SRF=207;SRP=452.505;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|0:167:154,0,11:154:6094:0,11:0,434:0,-46.3586,-547.909,-10.4846,-512.199,-508.887 0|1:8:5,0,3:5:180:0,3:0,115:-8.31414,-9.81929,-24.4899,0,-15.0449,-14.1418 0|1:80:48,8,24:48:1873:8,24:298,958:-64.4686,-54.5397,-206.071,0,-129.578,-146.736 dDocent_Contig_11796 28 . C A 66.7511 . AB=0.132075;ABP=65.3275;AC=2;AF=0.333333;AN=6;AO=7;CIGAR=1X;DP=72;DPB=72;DPRA=1.39474;EPP=18.2106;EPPR=144.156;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=3.46945e-18;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=282;QR=2614;RO=65;RPL=0;RPP=18.2106;RPPR=144.156;RPR=7;RUN=1;SAF=7;SAP=18.2106;SAR=0;SRF=65;SRP=144.156;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:41:36,5:36:1454:5:203:-6.31083,0,-118.765 0/1:12:10,2:10:407:2:79:-3.88527,0,-33.3782 0/0:19:19,0:19:753:0:0:0,-5.71957,-68.0896 dDocent_Contig_11797 33 . G A 272.78 . AB=0.139535;ABP=51.5402;AC=1;AF=0.166667;AN=6;AO=6;CIGAR=1M1X2M;DP=43;DPB=40.25;DPRA=0;EPP=16.0391;EPPR=59.4686;GTI=0;LEN=1;MEANALT=1.66667;MQM=60;MQMR=60;NS=3;NUMALT=2;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=244;QR=1042;RO=26;RPL=0;RPP=16.0391;RPPR=59.4686;RPR=6;RUN=1;SAF=6;SAP=16.0391;SAR=0;SRF=26;SRP=59.4686;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|0:32:18,10,4:18:719:10,4:397,163:-27.2551,0,-56.2022,-19.2233,-45.7637,-77.2398 0|1:2:1,0,1:1:39:0,1:0,41:-3.49251,-3.79354,-6.98951,0,-3.59553,-3.2945 0|0:9:7,1,1:7:284:1,1:40,40:-1.18787,0,-23.1255,0,-20.1321,-23.1255 dDocent_Contig_11798 13 . T C 754.09 . AB=0.481481;ABP=3.17115;AC=3;AF=0.5;AN=6;AO=26;CIGAR=1X;DP=54;DPB=54;DPRA=0;EPP=59.4686;EPPR=63.8115;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=0;PAIREDR=0.857143;PAO=0;PQA=0;PQR=0;PRO=0;QA=1054;QR=1114;RO=28;RPL=0;RPP=59.4686;RPPR=63.8115;RPR=26;RUN=1;SAF=26;SAP=59.4686;SAR=0;SRF=28;SRP=63.8115;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:28:12,16:12:488:16:647:-50.1335,0,-35.8421 0/1:11:10,1:10:384:1:41:-0.783237,0,-31.5968 0/1:15:6,9:6:242:9:366:-28.7897,0,-17.6419 dDocent_Contig_11799 13 . C T 594.563 . AB=0.35;ABP=10.8276;AC=4;AF=0.666666;AN=6;AO=14;CIGAR=1X6M;DP=56;DPB=56;DPRA=0;EPP=33.4109;EPPR=68.1545;GTI=0;LEN=1;MEANALT=1.5;MQM=60;MQMR=60;NS=3;NUMALT=2;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=546;QR=1168;RO=30;RPL=0;RPP=33.4109;RPPR=68.1545;RPR=14;RUN=1;SAF=14;SAP=33.4109;SAR=0;SRF=30;SRP=68.1545;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 1|1:12:2,7,3:2:80:7,3:268,121:-24.7595,-3.38759,-7.86902,-15.3812,0,-21.0719 0|1:16:11,4,0:11:431:4,0:160,0:-10.0527,0,-34.4413,-13.364,-35.6454,-48.8324 0|1:28:17,0,11:17:657:0,11:0,425:-30.1669,-35.2844,-89.2436,0,-54.3452,-51.0338 dDocent_Contig_11800 29 . T C 344.227 . AB=0.382353;ABP=7.09778;AC=2;AF=0.333333;AN=6;AO=13;CIGAR=1X;DP=37;DPB=37;DPRA=5.66667;EPP=31.2394;EPPR=55.1256;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=527;QR=965;RO=24;RPL=0;RPP=31.2394;RPPR=55.1256;RPR=13;RUN=1;SAF=13;SAP=31.2394;SAR=0;SRF=24;SRP=55.1256;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:18:9,9:9:360:9:366:-27.8864,0,-27.3444 0/0:3:3,0:3:119:0:0:0,-0.90309,-11.095 0/1:16:12,4:12:486:4:161:-10.059,0,-39.2743 dDocent_Contig_11801 7 . C T 87.664 . AB=0.12;ABP=128.435;AC=1;AF=0.166667;AN=6;AO=12;CIGAR=1X;DP=192;DPB=192;DPRA=2.17391;EPP=29.068;EPPR=393.875;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=59.9611;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=445;QR=6914;RO=180;RPL=0;RPP=29.068;RPPR=393.875;RPR=12;RUN=1;SAF=12;SAP=29.068;SAR=0;SRF=180;SRP=393.875;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:100:88,12:88:3393:12:445:-10.2893,0,-275.39 0/0:28:28,0:28:1061:0:0:0,-8.42884,-95.7966 0/0:64:64,0:64:2460:0:0:0,-19.2659,-221.603 dDocent_Contig_11802 7 . C T 1427.63 . AB=0.0634921;ABP=107.275;AC=0;AF=0;AN=6;AO=4;CIGAR=1X1M1X2M1X2M2X1M1X;DP=224;DPB=224;DPRA=0;EPP=11.6962;EPPR=213.643;GTI=0;LEN=1;MEANALT=6;MQM=60;MQMR=60;NS=3;NUMALT=6;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=158;QR=3747;RO=97;RPL=0;RPP=11.6962;RPPR=213.643;RPR=4;RUN=1;SAF=4;SAP=11.6962;SAR=0;SRF=97;SRP=213.643;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|0:118:47,0,2,14,3,32,9:47:1811:0,2,14,3,32,9:0,80,539,120,1271,357:-90.4847,-104.633,-253.327,-98.0428,-246.737,-246.135,-60.3828,-209.076,-202.485,-204.861,-94.7478,-243.442,-236.852,-199.19,-242.539,0,-148.694,-142.104,-104.442,-138.809,-139.061,-75.2479,-223.942,-217.352,-179.69,-214.057,-119.309,-221.233 0|0:43:24,0,0,3,2,10,3:24:923:0,0,3,2,10,3:0,0,120,79,401,118:-25.8168,-33.0415,-108.808,-33.0415,-108.808,-108.808,-23.156,-98.9219,-98.9219,-98.0188,-26.5413,-102.307,-102.307,-92.421,-101.705,0,-75.766,-75.766,-65.8795,-69.265,-72.7557,-23.3358,-99.1009,-99.1009,-89.2149,-92.6001,-66.0588,-98.1978 0|0:63:26,4,7,5,6,12,0:26:1013:4,7,5,6,12,0:158,279,193,230,483,0:-31.9843,-26.8091,-108.864,-16.8336,-87.0912,-97.986,-23.9626,-94.2193,-84.2441,-105.716,-20.9366,-91.1929,-81.2177,-88.3458,-102.389,0,-70.2588,-60.2833,-67.4118,-64.3854,-79.6487,-39.8111,-110.068,-100.093,-107.221,-104.195,-83.2611,-123.07 dDocent_Contig_11807 20 . T A 36.2786 . AB=0.125;ABP=42.0968;AC=1;AF=0.166667;AN=6;AO=4;CIGAR=1X;DP=56;DPB=56;DPRA=2.66667;EPP=11.6962;EPPR=115.927;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=0.961538;PAO=0;PQA=0;PQR=0;PRO=0;QA=160;QR=2018;RO=52;RPL=0;RPP=11.6962;RPPR=115.927;RPR=4;RUN=1;SAF=4;SAP=11.6962;SAR=0;SRF=52;SRP=115.927;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:32:28,4:28:1085:4:160:-5.15063,0,-88.312 0/0:8:8,0:8:313:0:0:0,-2.40824,-28.534 0/0:16:16,0:16:620:0:0:0,-4.81648,-56.1321 dDocent_Contig_11809 18 . T C 79.9097 . AB=0.266667;ABP=10.1038;AC=1;AF=0.25;AN=4;AO=4;CIGAR=1X;DP=30;DPB=30;DPRA=1;EPP=11.6962;EPPR=59.4686;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=2;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=0.461538;PAO=0;PQA=0;PQR=0;PRO=0;QA=157;QR=969;RO=26;RPL=0;RPP=11.6962;RPPR=59.4686;RPR=4;RUN=1;SAF=4;SAP=11.6962;SAR=0;SRF=26;SRP=59.4686;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:15:15,0:15:575:0:0:0,-4.51545,-52.0851 0/1:15:11,4:11:394:4:157:-9.99097,0,-31.28 ./.:.:.:.:.:.:.:. dDocent_Contig_11810 21 . T A 537.112 . AB=0.5;ABP=3.0103;AC=3;AF=0.5;AN=6;AO=20;CIGAR=1X;DP=40;DPB=40;DPRA=0;EPP=46.4397;EPPR=46.4397;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=779;QR=793;RO=20;RPL=0;RPP=46.4397;RPPR=46.4397;RPR=20;RUN=1;SAF=20;SAP=46.4397;SAR=0;SRF=20;SRP=46.4397;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:6:1,5:1:41:5:190:-15.6579,0,-2.28839 0/1:19:11,8:11:440:8:316:-23.0862,0,-34.2354 0/1:15:8,7:8:312:7:273:-20.4212,0,-23.924 dDocent_Contig_11812 107 . N A 64.5896 . AB=0;ABP=0;AC=2;AF=1;AN=2;AO=2;CIGAR=1X;DP=2;DPB=2;DPRA=0;EPP=7.35324;EPPR=0;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=0;NS=1;NUMALT=1;ODDS=5.99146;PAIRED=1;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=68;QR=0;RO=0;RPL=0;RPP=7.35324;RPPR=0;RPR=2;RUN=1;SAF=0;SAP=7.35324;SAR=2;SRF=0;SRP=0;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL ./.:.:.:.:.:.:.:. ./.:.:.:.:.:.:.:. 1/1:2:0,2:0:0:2:68:-6.45788,-0.60206,0 dDocent_Contig_11815 26 . G A 3649.62 . AB=0.60101;ABP=20.5576;AC=3;AF=0.5;AN=6;AO=119;CIGAR=1X;DP=198;DPB=198;DPRA=0;EPP=261.416;EPPR=174.557;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=0.991597;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=4771;QR=3159;RO=79;RPL=0;RPP=261.416;RPPR=174.557;RPR=119;RUN=1;SAF=119;SAP=261.416;SAR=0;SRF=79;SRP=174.557;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:132:40,92:40:1586:92:3692:-292.558,0,-103.236 0/1:5:3,2:3:122:2:80:-6.08642,0,-9.86734 0/1:61:36,25:36:1451:25:999:-71.8411,0,-112.476 dDocent_Contig_11816 62 . T C 205.46 . AB=0.156627;ABP=88.0117;AC=1;AF=0.166667;AN=6;AO=14;CIGAR=1X;DP=134;DPB=134;DPRA=66.5;EPP=33.4109;EPPR=263.587;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=59.25;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=539;QR=4771;RO=120;RPL=14;RPP=33.4109;RPPR=263.587;RPR=0;RUN=1;SAF=14;SAP=33.4109;SAR=0;SRF=120;SRP=263.587;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:83:70,13:70:2780:13:519:-22.0681,0,-224.74 0/0:1:1,0:1:41:0:0:0,-0.30103,-4.09457 0/0:50:49,1:49:1950:1:20:0,-13.0515,-173.6 dDocent_Contig_11817 61 . T C 107.4 . AB=0.363636;ABP=4.78696;AC=2;AF=0.333333;AN=6;AO=4;CIGAR=1M2X2M;DP=21;DPB=19.8;DPRA=0;EPP=11.6962;EPPR=33.4109;GTI=0;LEN=1;MEANALT=1.5;MQM=60;MQMR=60;NS=3;NUMALT=2;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=157;QR=547;RO=14;RPL=4;RPP=11.6962;RPPR=33.4109;RPR=0;RUN=1;SAF=4;SAP=11.6962;SAR=0;SRF=14;SRP=33.4109;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|1:3:1,0,2:1:39:0,2:0,75:-6.21571,-6.51674,-9.72762,0,-3.59553,-2.99347 0|0:10:8,2,0:8:310:2,0:82,0:-4.76938,0,-25.25,-7.17762,-25.8521,-32.6247 0|1:8:5,0,2:5:198:0,2:0,82:-5.26301,-6.76816,-23.0558,0,-16.2848,-15.6827 dDocent_Contig_11818 107 . N C 474.718 . AB=0;ABP=0;AC=4;AF=1;AN=4;AO=15;CIGAR=1X;DP=15;DPB=15;DPRA=0;EPP=35.5824;EPPR=0;GTI=0;LEN=1;MEANALT=1;MQM=55;MQMR=0;NS=2;NUMALT=1;ODDS=0;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=517;QR=0;RO=0;RPL=0;RPP=35.5824;RPPR=0;RPR=15;RUN=1;SAF=0;SAP=35.5824;SAR=15;SRF=0;SRP=0;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 1/1:13:0,13:0:0:13:447:-40.5284,-3.91339,0 1/1:2:0,2:0:0:2:70:-6.64179,-0.60206,0 ./.:.:.:.:.:.:.:. dDocent_Contig_11819 7 . C A 239.652 . AB=0.202703;ABP=59.8207;AC=3;AF=0.5;AN=6;AO=15;CIGAR=1X;DP=74;DPB=74;DPRA=0;EPP=35.5824;EPPR=114.344;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=59.3898;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=0.830508;PAO=0;PQA=0;PQR=0;PRO=0;QA=563;QR=2272;RO=59;RPL=0;RPP=35.5824;RPPR=131.127;RPR=15;RUN=1;SAF=15;SAP=35.5824;SAR=0;SRF=57;SRP=114.344;SRR=2;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:46:39,7:39:1499:7:256:-9.54329,0,-121.212 0/1:5:2,3:2:76:3:114:-9.12707,0,-5.70952 0/1:23:18,5:18:697:5:193:-10.8177,0,-56.1356 dDocent_Contig_11820 7 . C A 116.116 . AB=0.357143;ABP=5.49198;AC=1;AF=0.166667;AN=6;AO=5;CIGAR=2X;DP=30;DPB=30;DPRA=1.75;EPP=13.8677;EPPR=57.2971;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=192;QR=969;RO=25;RPL=0;RPP=13.8677;RPPR=57.2971;RPR=5;RUN=1;SAF=5;SAP=13.8677;SAR=0;SRF=25;SRP=57.2971;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|0:13:13,0:13:504:0:0:0,-3.91339,-45.7089 0|0:3:3,0:3:117:0:0:0,-0.90309,-10.9104 0|1:14:9,5:9:348:5:192:-13.4353,0,-27.466 dDocent_Contig_11821 61 . C A 223.634 . AB=0.170455;ABP=86.0198;AC=2;AF=0.333333;AN=6;AO=15;CIGAR=1X;DP=98;DPB=98;DPRA=4.4;EPP=35.5824;EPPR=183.243;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=574;QR=3278;RO=83;RPL=15;RPP=35.5824;RPPR=183.243;RPR=0;RUN=1;SAF=15;SAP=35.5824;SAR=0;SRF=83;SRP=183.243;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:52:46,6:46:1837:6:235:-5.86441,0,-149.889 0/0:10:10,0:10:389:0:0:0,-3.0103,-35.3615 0/1:36:27,9:27:1052:9:339:-20.0218,0,-84.1313 dDocent_Contig_11822 186 . A T 56.1345 . AB=0.222222;ABP=15.074;AC=2;AF=0.5;AN=4;AO=4;CIGAR=1X;DP=18;DPB=18;DPRA=0;EPP=11.6962;EPPR=33.4109;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=2;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=154;QR=560;RO=14;RPL=4;RPP=11.6962;RPPR=33.4109;RPR=0;RUN=1;SAF=0;SAP=11.6962;SAR=4;SRF=0;SRP=33.4109;SRR=14;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:12:9,3:9:356:3:113:-6.92456,0,-28.7861 ./.:.:.:.:.:.:.:. 0/1:6:5,1:5:204:1:41:-2.28839,0,-16.9379 dDocent_Contig_11823 11 . T C 105.93 . AB=0.0754717;ABP=85.9769;AC=3;AF=0.5;AN=6;AO=4;CIGAR=1X2M;DP=55;DPB=55;DPRA=0;EPP=11.6962;EPPR=96.3836;GTI=0;LEN=1;MEANALT=2;MQM=60;MQMR=60;NS=3;NUMALT=2;ODDS=6.93889e-18;PAIRED=0;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=158;QR=1689;RO=43;RPL=0;RPP=11.6962;RPPR=96.3836;RPR=4;RUN=1;SAF=4;SAP=11.6962;SAR=0;SRF=43;SRP=96.3836;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|1:36:28,6,2:28:1099:6,2:230,80:-10.4308,0,-88.5683,-12.2655,-83.7841,-102.053 0|1:2:1,1,0:1:39:1,0:40,0:-3.39362,0,-3.2945,-3.69465,-3.59553,-6.89557 0|1:17:14,1,2:14:551:1,2:39,78:-2.19717,-3.20571,-48.2308,0,-42.1207,-44.7243 dDocent_Contig_11824 11 . T C 1638.04 . AB=0.518519;ABP=3.332;AC=3;AF=0.5;AN=6;AO=56;CIGAR=1X;DP=108;DPB=108;DPRA=0;EPP=124.613;EPPR=115.927;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=6.93889e-18;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=2232;QR=2077;RO=52;RPL=0;RPP=124.613;RPPR=115.927;RPR=56;RUN=1;SAF=56;SAP=124.613;SAR=0;SRF=52;SRP=115.927;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:59:37,22:37:1478:22:873:-61.1081,0,-115.507 0/1:5:2,3:2:81:3:123:-9.95964,0,-6.18058 0/1:44:13,31:13:518:31:1236:-98.2595,0,-33.7192 dDocent_Contig_11825 8 . A T 195.466 . AB=0.152174;ABP=99.688;AC=1;AF=0.166667;AN=6;AO=19;CIGAR=1X;DP=193;DPB=193;DPRA=2.03947;EPP=44.2683;EPPR=380.846;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=57.8276;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=0.908046;PAO=0;PQA=0;PQR=0;PRO=0;QA=731;QR=6651;RO=174;RPL=0;RPP=44.2683;RPPR=380.846;RPR=19;RUN=1;SAF=19;SAP=44.2683;SAR=0;SRF=174;SRP=380.846;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:92:78,14:78:2980:14:538:-21.0694,0,-233.475 0/0:38:38,0:38:1444:0:0:0,-11.4391,-130.229 0/0:63:58,5:58:2227:5:193:0,-1.22353,-179.388 dDocent_Contig_11826 23 . C T 80.7476 . AB=0.266667;ABP=10.1038;AC=1;AF=0.166667;AN=6;AO=7;CIGAR=1X;DP=116;DPB=116;DPRA=2.4;EPP=18.2106;EPPR=239.701;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=270;QR=4255;RO=109;RPL=0;RPP=18.2106;RPPR=239.701;RPR=7;RUN=1;SAF=7;SAP=18.2106;SAR=0;SRF=109;SRP=239.701;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:81:78,3:78:3072:3:114:0,-13.7527,-265.958 0/0:20:20,0:20:774:0:0:0,-6.0206,-69.9797 0/1:15:11,4:11:409:4:156:-9.89867,0,-32.6372 dDocent_Contig_11828 7 . C T 96.8748 . AB=0.238095;ABP=15.5221;AC=1;AF=0.166667;AN=6;AO=11;CIGAR=1X;DP=136;DPB=136;DPRA=0;EPP=26.8965;EPPR=274.444;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=59.664;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=427;QR=4803;RO=125;RPL=0;RPP=26.8965;RPPR=274.444;RPR=11;RUN=1;SAF=11;SAP=26.8965;SAR=0;SRF=125;SRP=274.444;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:76:73,3:73:2806:3:117:0,-11.9679,-239.913 0/1:21:16,5:16:619:5:194:-11.5112,0,-49.7279 0/0:39:36,3:36:1378:3:116:0,-0.922465,-113.483 dDocent_Contig_11831 49 . C T 226.424 . AB=0.191176;ABP=59.3408;AC=2;AF=0.333333;AN=6;AO=13;CIGAR=1X;DP=73;DPB=73;DPRA=6.8;EPP=31.2394;EPPR=133.299;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=3.46945e-18;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=510;QR=2368;RO=60;RPL=0;RPP=31.2394;RPPR=133.299;RPR=13;RUN=1;SAF=13;SAP=31.2394;SAR=0;SRF=60;SRP=133.299;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:48:42,6:42:1676:6:230:-6.61466,0,-136.616 0/0:5:5,0:5:172:0:0:0,-1.50515,-15.804 0/1:20:13,7:13:520:7:280:-19.5506,0,-41.1251 dDocent_Contig_11832 33 . C T 131.193 . AB=0.5;ABP=3.0103;AC=1;AF=0.25;AN=4;AO=5;CIGAR=1X;DP=15;DPB=15;DPRA=2;EPP=13.8677;EPPR=24.725;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=2;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=194;QR=392;RO=10;RPL=0;RPP=13.8677;RPPR=24.725;RPR=5;RUN=1;SAF=5;SAP=13.8677;SAR=0;SRF=10;SRP=24.725;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:10:5,5:5:204:5:194:-14.8182,0,-15.7337 ./.:.:.:.:.:.:.:. 0/0:5:5,0:5:188:0:0:0,-1.50515,-17.2804 dDocent_Contig_11834 11 . G A 4220.19 . AB=0.0621469;ABP=297.754;AC=0;AF=0;AN=6;AO=11;CIGAR=1X2M2X2M1X1M;DP=269;DPB=269.111;DPRA=0;EPP=26.8965;EPPR=157.185;GTI=0;LEN=1;MEANALT=5.5;MQM=46.3636;MQMR=60;NS=3;NUMALT=5;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=424;QR=2737;RO=71;RPL=0;RPP=26.8965;RPPR=157.185;RPR=11;RUN=1;SAF=11;SAP=26.8965;SAR=0;SRF=71;SRP=157.185;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|0:158:54,9,0,0,5,72:54:2081:9,0,0,5,72:345,0,0,202,2870:-220.088,-208.928,-377.087,-236.343,-379.796,-407.212,-236.343,-379.796,-407.212,-407.212,-219.689,-363.142,-390.558,-390.558,-389.053,0,-143.459,-170.874,-170.874,-154.22,-149.2 0|0:19:10,2,2,0,0,5:10:381:2,2,0,0,5:79,81,0,0,197:-13.199,-10.056,-40.6959,-9.52652,-34.6165,-40.1713,-16.2093,-41.298,-40.7734,-47.4547,-16.2093,-41.298,-40.7734,-47.4547,-47.4547,0,-25.0881,-24.5621,-31.2447,-31.2447,-29.7396 0|0:92:7,0,0,6,9,58:7:275:0,0,6,9,58:0,0,244,361,2299:-194.255,-196.362,-218.982,-196.362,-218.982,-218.982,-176.293,-198.912,-198.912,-197.106,-166.617,-189.237,-189.237,-169.167,-186.527,-7.12841,-29.7498,-29.7498,-9.67712,0,-12.29 dDocent_Contig_11836 8 . A G 290.606 . AB=0;ABP=0;AC=4;AF=1;AN=4;AO=11;CIGAR=2X;DP=11;DPB=11;DPRA=0;EPP=26.8965;EPPR=0;GTI=0;LEN=1;MEANALT=1;MQM=30.7273;MQMR=0;NS=2;NUMALT=1;ODDS=0;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=362;QR=0;RO=0;RPL=0;RPP=26.8965;RPPR=0;RPR=11;RUN=1;SAF=11;SAP=26.8965;SAR=0;SRF=0;SRP=0;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 1|1:9:0,9:0:0:9:298:-24.1709,-2.70927,0 .:.:.:.:.:.:.:. 1|1:2:0,2:0:0:2:64:-4.58817,-0.60206,0 dDocent_Contig_11837 68 . G T 30.6661 . AB=0.142857;ABP=26.2761;AC=1;AF=0.166667;AN=6;AO=3;CIGAR=1X;DP=32;DPB=32;DPRA=3.81818;EPP=9.52472;EPPR=65.983;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=117;QR=1100;RO=29;RPL=3;RPP=9.52472;RPPR=65.983;RPR=0;RUN=1;SAF=3;SAP=9.52472;SAR=0;SRF=29;SRP=65.983;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:21:18,3:18:690:3:117:-4.58875,0,-56.1114 0/0:2:2,0:2:77:0:0:0,-0.60206,-7.30914 0/0:9:9,0:9:333:0:0:0,-2.70927,-30.3222 dDocent_Contig_11838 49 . T C 1269.24 . AB=0.716418;ABP=30.2671;AC=3;AF=0.5;AN=6;AO=48;CIGAR=1X;DP=67;DPB=67;DPRA=0;EPP=107.241;EPPR=44.2683;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=1685;QR=657;RO=19;RPL=0;RPP=107.241;RPPR=44.2683;RPR=48;RUN=1;SAF=48;SAP=107.241;SAR=0;SRF=19;SRP=44.2683;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:25:7,18:7:258:18:654:-51.6607,0,-16.0493 0/1:13:6,7:6:212:7:236:-17.6534,0,-15.5108 0/1:29:6,23:6:187:23:795:-63.1327,0,-8.40389 dDocent_Contig_11839 159 . A C 433.73 . AB=0.447368;ABP=3.9246;AC=3;AF=0.5;AN=6;AO=17;CIGAR=1X;DP=38;DPB=38;DPRA=0;EPP=39.9253;EPPR=48.6112;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=658;QR=836;RO=21;RPL=17;RPP=39.9253;RPPR=48.6112;RPR=0;RUN=1;SAF=0;SAP=39.9253;SAR=17;SRF=0;SRP=48.6112;SRR=21;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:14:5,9:5:202:9:337:-26.4593,0,-14.3474 0/1:16:11,5:11:429:5:198:-13.38,0,-34.1458 0/1:8:5,3:5:205:3:123:-9.05655,0,-16.4268 dDocent_Contig_11840 7 . C A 1519.27 . AB=0.0760234;ABP=270;AC=0;AF=0;AN=6;AO=13;CIGAR=2X2M4I1X1M2X1M1X;DP=193;DPB=198.2;DPRA=0;EPP=31.2394;EPPR=187.585;GTI=0;LEN=1;MEANALT=5.5;MQM=29;MQMR=60;NS=3;NUMALT=3;ODDS=0;PAIRED=0;PAIREDR=0.941176;PAO=0;PQA=0;PQR=0;PRO=0;QA=504;QR=3317;RO=85;RPL=0;RPP=31.2394;RPPR=187.585;RPR=13;RUN=1;SAF=13;SAP=31.2394;SAR=0;SRF=85;SRP=187.585;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|0:111:54,3,32,13:54:2107:3,32,13:119,1266,500:-87.9487,-97.3797,-269.676,0,-166.387,-163.58,-63.1647,-229.541,-132.173,-232.454 0|0:22:4,0,5,10:4:153:0,5,10:0,195,390:-34.3217,-35.5258,-48.0784,-19.4981,-32.0502,-30.5451,-3.47791,-16.029,0,-13.0187 0|0:60:27,10,9,13:27:1057:10,9,13:385,348,525:-35.1792,-20.7209,-104.622,-14.7152,-79.0516,-98.9405,0,-64.3491,-58.3594,-83.0331 dDocent_Contig_11841 153 . C T 4790.94 . AB=0.791444;ABP=140.974;AC=4;AF=0.666667;AN=6;AO=151;CIGAR=1X;DP=190;DPB=190;DPRA=0;EPP=330.903;EPPR=85.5263;GTI=0;LEN=1;MEANALT=1.33333;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=5979;QR=1492;RO=38;RPL=0;RPP=330.903;RPPR=85.5263;RPR=151;RUN=1;SAF=0;SAP=330.903;SAR=151;SRF=0;SRP=85.5263;SRR=38;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:129:22,106:22:850:106:4192:-338.642,0,-38.1893 1/1:3:0,3:0:0:3:115:-10.7238,-0.90309,0 0/1:58:16,42:16:642:42:1672:-133.251,0,-40.6546 dDocent_Contig_11842 1 . N C 528.764 . AB=0;ABP=0;AC=4;AF=1;AN=4;AO=18;CIGAR=1X;DP=18;DPB=18;DPRA=0;EPP=42.0968;EPPR=0;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=0;NS=2;NUMALT=1;ODDS=0;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=577;QR=0;RO=0;RPL=0;RPP=42.0968;RPPR=0;RPR=18;RUN=1;SAF=0;SAP=42.0968;SAR=18;SRF=0;SRP=0;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 1/1:14:0,14:0:0:14:437:-39.6303,-4.21442,0 ./.:.:.:.:.:.:.:. 1/1:4:0,4:0:0:4:140:-12.9449,-1.20412,0 dDocent_Contig_11843 67 . G A 163.802 . AB=0.307692;ABP=7.18621;AC=3;AF=0.5;AN=6;AO=6;CIGAR=1X;DP=26;DPB=26;DPRA=0.681818;EPP=16.0391;EPPR=46.4397;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=8.67362e-19;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=234;QR=750;RO=20;RPL=6;RPP=16.0391;RPPR=46.4397;RPR=0;RUN=1;SAF=6;SAP=16.0391;SAR=0;SRF=20;SRP=46.4397;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 1/1:2:0,2:0:0:2:77:-7.3082,-0.60206,0 0/0:11:11,0:11:434:0:0:0,-3.31133,-39.4115 0/1:13:9,4:9:316:4:157:-10.5945,0,-24.8572 dDocent_Contig_11844 28 . G A 123.686 . AB=0.384615;ABP=4.51363;AC=1;AF=0.166667;AN=6;AO=5;CIGAR=1X;DP=22;DPB=22;DPRA=2.88889;EPP=13.8677;EPPR=39.9253;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=197;QR=680;RO=17;RPL=0;RPP=13.8677;RPPR=39.9253;RPR=5;RUN=1;SAF=5;SAP=13.8677;SAR=0;SRF=17;SRP=39.9253;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:7:7,0:7:277:0:0:0,-2.10721,-25.2977 0/0:2:2,0:2:81:0:0:0,-0.60206,-7.68573 0/1:13:8,5:8:322:5:197:-14.1921,0,-25.4345 dDocent_Contig_11845 145 . A G 127.521 . AB=0;ABP=0;AC=2;AF=0.333333;AN=6;AO=4;CIGAR=1X;DP=16;DPB=16;DPRA=0.666667;EPP=11.6962;EPPR=29.068;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=136;QR=406;RO=12;RPL=0;RPP=11.6962;RPPR=29.068;RPR=4;RUN=1;SAF=0;SAP=11.6962;SAR=4;SRF=0;SRP=29.068;SRR=12;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:7:7,0:7:240:0:0:0,-2.10721,-21.9349 0/0:5:5,0:5:166:0:0:0,-1.50515,-15.2672 1/1:4:0,4:0:0:4:136:-12.5759,-1.20412,0 dDocent_Contig_11847 18 . C T 977.143 . 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T C 121.595 . AB=0.32;ABP=10.0459;AC=2;AF=0.333333;AN=6;AO=8;CIGAR=1X;DP=64;DPB=64;DPRA=0.320513;EPP=20.3821;EPPR=124.613;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=251;QR=1995;RO=56;RPL=0;RPP=20.3821;RPPR=124.613;RPR=8;RUN=1;SAF=0;SAP=20.3821;SAR=8;SRF=0;SRP=124.613;SRR=56;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:39:39,0:39:1383:0:0:0,-11.7402,-124.765 0/1:7:3,4:3:109:4:107:-7.78742,0,-8.06088 0/1:18:14,4:14:503:4:144:-7.89499,0,-40.1888 dDocent_Contig_11851 143 . T A 783.381 . AB=0.636364;ABP=10.1169;AC=3;AF=0.5;AN=6;AO=28;CIGAR=1X;DP=44;DPB=44;DPRA=0;EPP=63.8115;EPPR=37.7539;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=1067;QR=607;RO=16;RPL=0;RPP=63.8115;RPPR=37.7539;RPR=28;RUN=1;SAF=0;SAP=63.8115;SAR=28;SRF=0;SRP=37.7539;SRR=16;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:31:10,21:10:382:21:809:-63.799,0,-25.4031 0/1:2:1,1:1:36:1:39:-3.2945,0,-2.99621 0/1:11:5,6:5:189:6:219:-16.746,0,-14.0641 dDocent_Contig_11852 23 . A T 1541.04 . AB=0.490741;ABP=3.09072;AC=3;AF=0.5;AN=6;AO=53;CIGAR=1X;DP=108;DPB=108;DPRA=0;EPP=118.098;EPPR=122.441;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=2124;QR=2169;RO=55;RPL=0;RPP=118.098;RPPR=122.441;RPR=53;RUN=1;SAF=53;SAP=118.098;SAR=0;SRF=55;SRP=122.441;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:67:25,42:25:978:42:1680:-131.253,0,-68.1509 0/1:8:5,3:5:197:3:120:-8.77907,0,-15.6967 0/1:33:25,8:25:994:8:324:-19.5952,0,-79.8212 dDocent_Contig_11853 9 . A G 586.971 . AB=0.383333;ABP=10.1038;AC=3;AF=0.5;AN=6;AO=23;CIGAR=1X3M1X;DP=60;DPB=60;DPRA=0;EPP=52.9542;EPPR=83.3548;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=902;QR=1466;RO=37;RPL=0;RPP=52.9542;RPPR=83.3548;RPR=23;RUN=1;SAF=23;SAP=52.9542;SAR=0;SRF=37;SRP=83.3548;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|1:34:20,14:20:793:14:546:-39.2487,0,-61.4586 0|1:19:14,5:14:551:5:198:-12.478,0,-44.2157 0|1:7:3,4:3:122:4:158:-12.4933,0,-9.26528 dDocent_Contig_11854 98 . N A 220.287 . AB=0;ABP=0;AC=4;AF=1;AN=4;AO=7;CIGAR=3X;DP=7;DPB=7;DPRA=0;EPP=18.2106;EPPR=0;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=0;NS=2;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=234;QR=0;RO=0;RPL=7;RPP=18.2106;RPPR=0;RPR=0;RUN=1;SAF=7;SAP=18.2106;SAR=0;SRF=0;SRP=0;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 1|1:6:0,6:0:0:6:200:-18.3276,-1.80618,0 .:.:.:.:.:.:.:. 1|1:1:0,1:0:0:1:34:-3.39891,-0.30103,0 dDocent_Contig_11855 21 . T G 581.803 . AB=0.214286;ABP=22.8638;AC=2;AF=0.333333;AN=6;AO=6;CIGAR=2M7I8M1X4M1X3M1X;DP=31;DPB=40.8;DPRA=4.66667;EPP=16.0391;EPPR=0;GTI=0;LEN=1;MEANALT=5;MQM=41;MQMR=0;NS=3;NUMALT=4;ODDS=6.93889e-18;PAIRED=1;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=219;QR=0;RO=0;RPL=0;RPP=16.0391;RPPR=0;RPR=6;RUN=1;SAF=6;SAP=16.0391;SAR=0;SRF=0;SRP=0;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 1|0:16:0,2,6,4,4:0:0:2,6,4,4:79,225,154,145:-30.0363,-23.6288,-23.0267,-12.4825,-6.07346,-10.6764,-17.556,-11.1461,0,-16.3519,-18.6909,-12.2832,-1.14537,-6.21092,-17.4868 0|0:3:0,3,0,0,0:0:0:3,0,0,0:118,0,0,0:-10.9221,-0.90309,0,-10.9221,-0.90309,-10.9221,-10.9221,-0.90309,-10.9221,-10.9221,-10.9221,-0.90309,-10.9221,-10.9221,-10.9221 0|1:12:0,2,5,0,2:0:0:2,5,0,2:78,183,0,74:-20.6961,-14.3649,-13.7628,-6.34141,0,-4.83626,-20.6961,-14.3649,-6.34141,-20.6961,-14.9149,-8.58122,-0.556089,-14.9149,-14.3129 dDocent_Contig_11857 107 . N C 104.222 . AB=0;ABP=0;AC=4;AF=1;AN=4;AO=6;CIGAR=1X2M1X;DP=7;DPB=8.5;DPRA=0;EPP=16.0391;EPPR=0;GTI=0;LEN=1;MEANALT=1.5;MQM=18.8333;MQMR=0;NS=2;NUMALT=1;ODDS=0;PAIRED=0;PAIREDR=0;PAO=3;PQA=105;PQR=0;PRO=0;QA=196;QR=0;RO=0;RPL=0;RPP=16.0391;RPPR=0;RPR=6;RUN=1;SAF=0;SAP=16.0391;SAR=6;SRF=0;SRP=0;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 1|1:5:0,5:0:0:5:163:-9.62018,-1.50515,0 .:.:.:.:.:.:.:. 1|1:2:0,1:0:0:1:33:-0.425253,-0.30103,0 dDocent_Contig_11859 75 . G A 410.008 . AB=0.382979;ABP=8.60069;AC=2;AF=0.333333;AN=6;AO=18;CIGAR=1X;DP=55;DPB=55;DPRA=2.9375;EPP=42.0968;EPPR=83.3548;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=636;QR=1306;RO=37;RPL=18;RPP=42.0968;RPPR=83.3548;RPR=0;RUN=1;SAF=18;SAP=42.0968;SAR=0;SRF=37;SRP=83.3548;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:39:22,17:22:793:17:599:-42.4963,0,-59.9522 0/1:8:7,1:7:246:1:37:-1.28959,0,-20.0728 0/0:8:8,0:8:267:0:0:0,-2.40824,-24.3558 dDocent_Contig_11861 57 . T A 162.15 . AB=0.242424;ABP=22.0271;AC=2;AF=0.333333;AN=6;AO=8;CIGAR=1X;DP=37;DPB=37;DPRA=4.125;EPP=20.3821;EPPR=65.983;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=321;QR=1158;RO=29;RPL=8;RPP=20.3821;RPPR=65.983;RPR=0;RUN=1;SAF=8;SAP=20.3821;SAR=0;SRF=29;SRP=65.983;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:18:12,6:12:475:6:245:-17.0109,0,-37.6766 0/0:4:4,0:4:163:0:0:0,-1.20412,-15.0584 0/1:15:13,2:13:520:2:76:-2.69881,0,-42.6309 dDocent_Contig_11862 30 . A G 72.3995 . AB=0.210526;ABP=16.8392;AC=1;AF=0.166667;AN=6;AO=4;CIGAR=1X;DP=113;DPB=113;DPRA=0.404255;EPP=11.6962;EPPR=239.701;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=0.981651;PAO=0;PQA=0;PQR=0;PRO=0;QA=160;QR=4322;RO=109;RPL=0;RPP=11.6962;RPPR=239.701;RPR=4;RUN=1;SAF=4;SAP=11.6962;SAR=0;SRF=109;SRP=239.701;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:56:56,0:56:2215:0:0:0,-16.8577,-199.523 0/1:19:15,4:15:602:4:160:-9.06386,0,-48.7991 0/0:38:38,0:38:1505:0:0:0,-11.4391,-135.696 dDocent_Contig_11863 7 . C A 166.695 . AB=0.243243;ABP=24.1968;AC=2;AF=0.333333;AN=6;AO=10;CIGAR=1X;DP=57;DPB=57;DPRA=0;EPP=24.725;EPPR=105.07;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=379;QR=1798;RO=47;RPL=0;RPP=24.725;RPPR=105.07;RPR=10;RUN=1;SAF=10;SAP=24.725;SAR=0;SRF=47;SRP=105.07;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:27:23,4:23:871:4:149:-5.64452,0,-70.5805 0/1:10:5,5:5:193:5:191:-14.5478,0,-14.7311 0/0:20:19,1:19:734:1:39:0,-2.12404,-62.4947 dDocent_Contig_11864 40 . C A 164.692 . AB=0.266667;ABP=17.1973;AC=2;AF=0.333333;AN=6;AO=8;CIGAR=1X;DP=31;DPB=31;DPRA=15;EPP=20.3821;EPPR=52.9542;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=1.73472e-18;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=314;QR=883;RO=23;RPL=0;RPP=20.3821;RPPR=52.9542;RPR=8;RUN=1;SAF=8;SAP=20.3821;SAR=0;SRF=23;SRP=52.9542;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:18:15,3:15:571:3:122:-5.95395,0,-46.3019 0/0:1:1,0:1:41:0:0:0,-0.30103,-4.09457 0/1:12:7,5:7:271:5:192:-14.0374,0,-21.144 dDocent_Contig_11865 17 . T C 1098.88 . AB=0.376471;ABP=14.2764;AC=3;AF=0.5;AN=6;AO=32;CIGAR=1X1M1X7M;DP=96;DPB=96;DPRA=0;EPP=72.4974;EPPR=55.1256;GTI=0;LEN=1;MEANALT=5;MQM=41.25;MQMR=60;NS=3;NUMALT=4;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=1263;QR=946;RO=24;RPL=0;RPP=72.4974;RPPR=55.1256;RPR=32;RUN=1;SAF=32;SAP=72.4974;SAR=0;SRF=24;SRP=55.1256;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 1|0:52:11,3,22,0,12:11:428:3,22,0,12:115,864,0,488:-68.3805,-62.4114,-96.6794,-5.09452,-30.9826,-33.639,-71.6918,-97.5825,-40.2616,-106.863,-31.4288,-57.3223,0,-66.6031,-62.9908 0|0:11:8,0,0,0,3:8:322:0,0,0,3:0,0,0,120:-7.85559,-10.2638,-36.8048,-10.2638,-36.8048,-36.8048,-10.2638,-36.8048,-36.8048,-36.8048,0,-26.9407,-26.9407,-26.9407,-26.0376 1|1:33:5,8,10,2,7:5:196:8,10,2,7:320,399,81,275:-39.1749,-14.8541,-28.5654,-9.70625,0,-22.8141,-34.008,-24.3014,-19.1525,-49.5249,-18.1098,-8.40261,-3.25544,-27.5569,-32.1219 dDocent_Contig_11866 11 . A G 51.3208 . AB=0.2;ABP=22.5536;AC=2;AF=0.333333;AN=6;AO=6;CIGAR=1X;DP=44;DPB=44;DPRA=0;EPP=16.0391;EPPR=85.5263;GTI=0;LEN=1;MEANALT=1;MQM=35.8333;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=0;PAIREDR=0.789474;PAO=0;PQA=0;PQR=0;PRO=0;QA=226;QR=1511;RO=38;RPL=0;RPP=16.0391;RPPR=85.5263;RPR=6;RUN=1;SAF=0;SAP=16.0391;SAR=6;SRF=38;SRP=85.5263;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:22:19,3:19:763:3:112:-2.89622,0,-62.3675 0/1:3:1,2:1:38:2:78:-5.72333,0,-2.89418 0/0:19:18,1:18:710:1:36:0,-2.81681,-61.3171 dDocent_Contig_11868 26 . A G 105.898 . AB=0.152542;ABP=64.8789;AC=3;AF=0.5;AN=6;AO=9;CIGAR=1X;DP=59;DPB=59;DPRA=0;EPP=22.5536;EPPR=111.584;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=0;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=346;QR=1999;RO=50;RPL=0;RPP=22.5536;RPPR=111.584;RPR=9;RUN=1;SAF=9;SAP=22.5536;SAR=0;SRF=50;SRP=111.584;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:35:29,6:29:1152:6:240:-11.4385,0,-93.4215 0/1:13:11,2:11:443:2:69:-2.63889,0,-36.3123 0/1:11:10,1:10:404:1:37:-0.386499,0,-33.4085 dDocent_Contig_11869 29 . C T 108.21 . AB=0.3125;ABP=7.89611;AC=2;AF=0.333333;AN=6;AO=6;CIGAR=1X;DP=30;DPB=30;DPRA=0;EPP=16.0391;EPPR=55.1256;GTI=0;LEN=1;MEANALT=1;MQM=57.3333;MQMR=59.8333;NS=3;NUMALT=1;ODDS=0;PAIRED=0.833333;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=241;QR=959;RO=24;RPL=0;RPP=16.0391;RPPR=55.1256;RPR=6;RUN=1;SAF=6;SAP=16.0391;SAR=0;SRF=24;SRP=55.1256;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:9:5,4:5:201:4:162:-12.2577,0,-15.754 0/1:7:6,1:6:243:1:41:-1.81637,0,-20.141 0/0:14:13,1:13:515:1:38:0,-0.417151,-42.8956 dDocent_Contig_11870 13 . T A 114.127 . AB=0.205882;ABP=28.557;AC=3;AF=0.5;AN=6;AO=7;CIGAR=1X;DP=34;DPB=34;DPRA=0;EPP=18.2106;EPPR=61.6401;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=0;PAIREDR=0.888889;PAO=0;PQA=0;PQR=0;PRO=0;QA=268;QR=1077;RO=27;RPL=0;RPP=18.2106;RPPR=61.6401;RPR=7;RUN=1;SAF=7;SAP=18.2106;SAR=0;SRF=27;SRP=61.6401;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:9:8,1:8:322:1:28:-0.0904566,0,-26.6391 0/1:8:7,1:7:272:1:41:-1.68633,0,-22.4376 0/1:17:12,5:12:483:5:199:-13.1699,0,-38.7036 dDocent_Contig_11871 16 . G C 412.392 . AB=0.315789;ABP=19.8106;AC=3;AF=0.5;AN=6;AO=18;CIGAR=1X;DP=57;DPB=57;DPRA=0;EPP=42.0968;EPPR=87.6977;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=0.944444;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=698;QR=1535;RO=39;RPL=0;RPP=42.0968;RPPR=87.6977;RPR=18;RUN=1;SAF=18;SAP=42.0968;SAR=0;SRF=39;SRP=87.6977;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:10:5,5:5:204:5:202:-15.5518,0,-15.7337 0/1:28:24,4:24:935:4:153:-5.7111,0,-76.0244 0/1:19:10,9:10:396:9:343:-25.4992,0,-30.2772 dDocent_Contig_11873 1 . N G 76.8682 . AB=0;ABP=0;AC=2;AF=1;AN=2;AO=2;CIGAR=1X;DP=2;DPB=2;DPRA=0;EPP=7.35324;EPPR=0;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=0;NS=1;NUMALT=1;ODDS=5.99146;PAIRED=1;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=81;QR=0;RO=0;RPL=0;RPP=7.35324;RPPR=0;RPR=2;RUN=1;SAF=2;SAP=7.35324;SAR=0;SRF=0;SRP=0;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 1/1:2:0,2:0:0:2:81:-7.68573,-0.60206,0 ./.:.:.:.:.:.:.:. ./.:.:.:.:.:.:.:. dDocent_Contig_11874 8 . A G 1040.32 . AB=0.806452;ABP=28.2974;AC=3;AF=0.5;AN=6;AO=33;CIGAR=1X;DP=45;DPB=45;DPRA=3.25;EPP=74.6689;EPPR=29.068;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=1269;QR=461;RO=12;RPL=0;RPP=74.6689;RPPR=29.068;RPR=33;RUN=1;SAF=33;SAP=74.6689;SAR=0;SRF=12;SRP=29.068;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:31:6,25:6:234:25:959:-77.2909,0,-12.0992 0/0:6:6,0:6:227:0:0:0,-1.80618,-20.7931 1/1:8:0,8:0:0:8:310:-28.2637,-2.40824,0 dDocent_Contig_11875 34 . T A 79.6516 . AB=0.307692;ABP=7.18621;AC=1;AF=0.166667;AN=6;AO=4;CIGAR=1X;DP=27;DPB=27;DPRA=1.85714;EPP=11.6962;EPPR=52.9542;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=145;QR=932;RO=23;RPL=0;RPP=11.6962;RPPR=52.9542;RPR=4;RUN=1;SAF=4;SAP=11.6962;SAR=0;SRF=23;SRP=52.9542;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:13:9,4:9:367:4:145:-9.48786,0,-29.4819 0/0:3:3,0:3:122:0:0:0,-0.90309,-11.3725 0/0:11:11,0:11:443:0:0:0,-3.31133,-40.2253 dDocent_Contig_11876 61 . G C 116.249 . AB=0.15;ABP=66.8516;AC=2;AF=0.333333;AN=6;AO=9;CIGAR=1X;DP=134;DPB=134;DPRA=0.405405;EPP=22.5536;EPPR=274.444;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=360;QR=4945;RO=125;RPL=9;RPP=22.5536;RPPR=274.444;RPR=0;RUN=1;SAF=9;SAP=22.5536;SAR=0;SRF=125;SRP=274.444;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:74:74,0:74:2923:0:0:0,-22.2762,-263.177 0/1:17:15,2:15:605:2:80:-2.47428,0,-49.6709 0/1:43:36,7:36:1417:7:280:-12.6275,0,-114.841 dDocent_Contig_11877 107 . N T 66.4848 . AB=0;ABP=0;AC=2;AF=1;AN=2;AO=2;CIGAR=1X;DP=2;DPB=2;DPRA=0;EPP=7.35324;EPPR=0;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=0;NS=1;NUMALT=1;ODDS=5.99146;PAIRED=1;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=70;QR=0;RO=0;RPL=0;RPP=7.35324;RPPR=0;RPR=2;RUN=1;SAF=0;SAP=7.35324;SAR=2;SRF=0;SRP=0;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 1/1:2:0,2:0:0:2:70:-6.6474,-0.60206,0 ./.:.:.:.:.:.:.:. ./.:.:.:.:.:.:.:. dDocent_Contig_11879 21 . G A 70.4784 . AB=0.375;ABP=4.09604;AC=1;AF=0.166667;AN=6;AO=3;CIGAR=1X;DP=87;DPB=87;DPRA=0.202532;EPP=9.52472;EPPR=185.414;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=121;QR=3348;RO=84;RPL=0;RPP=9.52472;RPPR=185.414;RPR=3;RUN=1;SAF=3;SAP=9.52472;SAR=0;SRF=84;SRP=185.414;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:45:45,0:45:1788:0:0:0,-13.5463,-161.137 0/1:8:5,3:5:202:3:121:-8.87175,0,-16.1538 0/0:34:34,0:34:1358:0:0:0,-10.235,-122.479 dDocent_Contig_11880 30 . A T 106.329 . AB=0;ABP=0;AC=2;AF=1;AN=2;AO=3;CIGAR=2X1M1I2M;DP=3;DPB=3.6;DPRA=0;EPP=9.52472;EPPR=0;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=0;NS=1;NUMALT=1;ODDS=6.68461;PAIRED=1;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=114;QR=0;RO=0;RPL=0;RPP=9.52472;RPPR=0;RPR=3;RUN=1;SAF=3;SAP=9.52472;SAR=0;SRF=0;SRP=0;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 1|1:3:0,3:0:0:3:114:-10.6324,-0.90309,0 .:.:.:.:.:.:.:. .:.:.:.:.:.:.:. dDocent_Contig_11881 9 . A T 272.908 . AB=0.131579;ABP=92.6121;AC=1;AF=0.166667;AN=6;AO=11;CIGAR=1X5M1X3M;DP=109;DPB=109;DPRA=0;EPP=26.8965;EPPR=172.385;GTI=0;LEN=1;MEANALT=2.33333;MQM=60;MQMR=60;NS=3;NUMALT=4;ODDS=0;PAIRED=0;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=418;QR=3068;RO=78;RPL=0;RPP=26.8965;RPPR=172.385;RPR=11;RUN=1;SAF=11;SAP=26.8965;SAR=0;SRF=78;SRP=172.385;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|0:73:49,0,8,12,4:49:1927:0,8,12,4:0,310,484,163:-25.1508,-39.9013,-198.404,-14.4386,-172.937,-170.529,0,-158.506,-133.038,-154.893,-26.4523,-184.956,-159.489,-145.057,-183.752 0|1:3:1,0,2,0,0:1:39:0,2,0,0:0,69,0,0:-5.64823,-5.94926,-9.17009,0,-3.59553,-2.99347,-5.94926,-9.17009,-3.59553,-9.17009,-5.94926,-9.17009,-3.59553,-9.17009,-9.17009 0|0:33:28,2,1,2,0:28:1102:2,1,2,0:71,39,80,0:0,-2.66188,-92.7099,-5.22046,-90.1063,-95.5864,-1.82541,-86.7214,-89.2967,-91.9005,-8.42884,-93.312,-95.8874,-92.5025,-99.0932 dDocent_Contig_11883 125 . T A 62.1293 . AB=0;ABP=0;AC=2;AF=0.333333;AN=6;AO=2;CIGAR=10M1X6M;DP=22;DPB=22;DPRA=0;EPP=7.35324;EPPR=33.4109;GTI=0;LEN=1;MEANALT=2;MQM=60;MQMR=60;NS=3;NUMALT=2;ODDS=0;PAIRED=0.5;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=67;QR=462;RO=14;RPL=0;RPP=7.35324;RPPR=33.4109;RPR=2;RUN=1;SAF=0;SAP=7.35324;SAR=2;SRF=0;SRP=33.4109;SRR=14;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|0:11:8,2,0:8:266:2,0:44,0:-1.01623,0,-21.1117,-3.42447,-21.7137,-25.0554 1|1:3:0,0,2:0:0:0,2:0,67:-6.01817,-6.01817,-6.01817,-0.60206,-0.60206,0 0|0:8:6,1,0:6:196:1,0:27,0:-0.357586,0,-15.636,-2.16377,-15.937,-18.0609 dDocent_Contig_11884 107 . N C 213.571 . AB=0;ABP=0;AC=6;AF=1;AN=6;AO=8;CIGAR=1X;DP=8;DPB=8;DPRA=0;EPP=20.3821;EPPR=0;GTI=0;LEN=1;MEANALT=1;MQM=53.625;MQMR=0;NS=3;NUMALT=1;ODDS=1.69407e-21;PAIRED=0.75;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=247;QR=0;RO=0;RPL=0;RPP=20.3821;RPPR=0;RPR=8;RUN=1;SAF=0;SAP=20.3821;SAR=8;SRF=0;SRP=0;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 1/1:3:0,3:0:0:3:77:-7.18411,-0.90309,0 1/1:4:0,4:0:0:4:136:-10.1712,-1.20412,0 1/1:1:0,1:0:0:1:34:-3.39891,-0.30103,0 dDocent_Contig_11885 13 . G T 240.871 . AB=0.244444;ABP=28.5372;AC=2;AF=0.333333;AN=6;AO=11;CIGAR=2X;DP=55;DPB=55;DPRA=2.25;EPP=26.8965;EPPR=96.3836;GTI=0;LEN=1;MEANALT=1.5;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=450;QR=1597;RO=43;RPL=0;RPP=26.8965;RPPR=96.3836;RPR=11;RUN=1;SAF=11;SAP=26.8965;SAR=0;SRF=43;SRP=96.3836;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|1:24:19,4:19:699:4:164:-7.81675,0,-55.9019 0|1:21:14,7:14:510:7:286:-19.7932,0,-39.9145 0|0:10:10,0:10:388:0:0:0,-3.0103,-35.2774 dDocent_Contig_11887 16 . T A 304.596 . AB=0;ABP=0;AC=6;AF=1;AN=6;AO=9;CIGAR=1X;DP=9;DPB=9;DPRA=0;EPP=22.5536;EPPR=0;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=0;NS=3;NUMALT=1;ODDS=1.69407e-21;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=320;QR=0;RO=0;RPL=0;RPP=22.5536;RPPR=0;RPR=9;RUN=1;SAF=9;SAP=22.5536;SAR=0;SRF=0;SRP=0;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 1/1:6:0,6:0:0:6:211:-19.3322,-1.80618,0 1/1:1:0,1:0:0:1:35:-3.49863,-0.30103,0 1/1:2:0,2:0:0:2:74:-7.02588,-0.60206,0 dDocent_Contig_11888 32 . G A 2097.33 . AB=0.329268;ABP=65.2945;AC=3;AF=0.5;AN=6;AO=81;CIGAR=1X;DP=246;DPB=246;DPRA=0;EPP=178.9;EPPR=361.303;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=3205;QR=6287;RO=165;RPL=0;RPP=178.9;RPPR=361.303;RPR=81;RUN=1;SAF=81;SAP=178.9;SAR=0;SRF=165;SRP=361.303;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:127:72,55:72:2782:55:2192:-159.223,0,-212.26 0/1:24:15,9:15:597:9:349:-24.5435,0,-46.8449 0/1:95:78,17:78:2908:17:664:-31.4893,0,-233.275 dDocent_Contig_11890 199 . C A 86.8035 . AB=0.307692;ABP=7.18621;AC=1;AF=0.166667;AN=6;AO=4;CIGAR=1X;DP=36;DPB=36;DPRA=1.13043;EPP=11.6962;EPPR=72.4974;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=156;QR=1222;RO=32;RPL=4;RPP=11.6962;RPPR=72.4974;RPR=0;RUN=1;SAF=0;SAP=11.6962;SAR=4;SRF=0;SRP=72.4974;SRR=32;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:21:21,0:21:797:0:0:0,-6.32163,-72.0485 0/0:2:2,0:2:78:0:0:0,-0.60206,-7.40347 0/1:13:9,4:9:347:4:156:-10.5039,0,-27.6759 dDocent_Contig_11891 107 . N A 93.312 . AB=0;ABP=0;AC=2;AF=1;AN=2;AO=3;CIGAR=1X;DP=3;DPB=3;DPRA=0;EPP=9.52472;EPPR=0;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=0;NS=1;NUMALT=1;ODDS=6.68461;PAIRED=1;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=100;QR=0;RO=0;RPL=0;RPP=9.52472;RPPR=0;RPR=3;RUN=1;SAF=0;SAP=9.52472;SAR=3;SRF=0;SRP=0;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL ./.:.:.:.:.:.:.:. 1/1:3:0,3:0:0:3:100:-9.33066,-0.90309,0 ./.:.:.:.:.:.:.:. dDocent_Contig_11893 15 . T C 433.545 . AB=0.348837;ABP=11.5447;AC=2;AF=0.333333;AN=6;AO=15;CIGAR=1M2D5M1X7M;DP=46;DPB=43.75;DPRA=7.16667;EPP=35.5824;EPPR=55.1256;GTI=0;LEN=1;MEANALT=2.5;MQM=60;MQMR=60;NS=3;NUMALT=2;ODDS=6.93889e-18;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=534;QR=928;RO=24;RPL=0;RPP=35.5824;RPPR=55.1256;RPR=15;RUN=1;SAF=15;SAP=35.5824;SAR=0;SRF=24;SRP=55.1256;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|1:26:13,10,2:13:503:10,2:350,78:-24.5294,0,-38.3095,-22.0252,-34.9074,-62.7586 0|0:3:0,0,3:0:0:0,3:0,114:-10.6322,-10.6322,-10.6322,-0.90309,-0.90309,0 0|1:17:11,5,1:11:425:5,1:184,39:-11.7153,0,-33.397,-11.8171,-31.696,-46.4341 dDocent_Contig_11895 10 . T C 2187.04 . AB=0.394737;ABP=17.6392;AC=4;AF=0.666666;AN=6;AO=60;CIGAR=1X3M;DP=152;DPB=152;DPRA=0;EPP=133.299;EPPR=74.6689;GTI=0;LEN=1;MEANALT=3.33333;MQM=60;MQMR=60;NS=3;NUMALT=4;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=2340;QR=1322;RO=33;RPL=0;RPP=133.299;RPPR=74.6689;RPR=60;RUN=1;SAF=60;SAP=133.299;SAR=0;SRF=33;SRP=74.6689;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|1:80:17,11,4,11,37:17:681:11,4,11,37:433,160,446,1425:-111.859,-81.3576,-134.15,-103.811,-124.295,-158.71,-80.194,-100.679,-123.132,-132.987,0,-20.4849,-42.9359,-19.3197,-44.9632 1|1:30:4,5,8,0,13:4:157:5,8,0,13:196,317,0,513:-54.1872,-39.2735,-50.6795,-29.2979,-26.0913,-39.801,-55.3913,-52.1847,-42.2093,-68.3027,-13.1834,-9.977,0,-26.0946,-22.1812 0|1:42:12,1,19,0,10:12:484:1,19,0,10:40,751,0,402:-58.181,-58.4982,-98.0952,0,-36.6022,-34.1776,-61.7934,-98.3963,-39.8972,-101.691,-28.664,-65.2682,-6.77048,-68.5634,-65.5531 dDocent_Contig_11896 70 . A T 295.123 . AB=0.318182;ABP=9.32731;AC=3;AF=0.5;AN=6;AO=12;CIGAR=1X;DP=35;DPB=35;DPRA=1.6875;EPP=29.068;EPPR=52.9542;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=411;QR=827;RO=23;RPL=12;RPP=29.068;RPPR=52.9542;RPR=0;RUN=1;SAF=12;SAP=29.068;SAR=0;SRF=23;SRP=52.9542;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:22:15,7:15:534:7:246:-15.8594,0,-41.7705 0/0:8:8,0:8:293:0:0:0,-2.40824,-26.7208 1/1:5:0,5:0:0:5:165:-15.1757,-1.50515,0 dDocent_Contig_11897 7 . A G 87.785 . AB=0.272727;ABP=12.8806;AC=1;AF=0.166667;AN=6;AO=6;CIGAR=1X;DP=74;DPB=74;DPRA=0.846154;EPP=16.0391;EPPR=150.67;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=1.73472e-18;PAIRED=0;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=188;QR=2551;RO=68;RPL=0;RPP=16.0391;RPPR=150.67;RPR=6;RUN=1;SAF=6;SAP=16.0391;SAR=0;SRF=68;SRP=150.67;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:46:46,0:46:1731:0:0:0,-13.8474,-156.044 0/1:22:16,6:16:594:6:188:-10.6024,0,-47.1716 0/0:6:6,0:6:226:0:0:0,-1.80618,-20.7021 dDocent_Contig_11900 8 . T A 78.8079 . AB=0;ABP=0;AC=2;AF=0.333333;AN=6;AO=3;CIGAR=1X2M1X;DP=38;DPB=38;DPRA=0.857143;EPP=9.52472;EPPR=79.0118;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=8.67362e-19;PAIRED=0;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=117;QR=1383;RO=35;RPL=0;RPP=9.52472;RPPR=79.0118;RPR=3;RUN=1;SAF=3;SAP=9.52472;SAR=0;SRF=35;SRP=79.0118;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 1|1:2:0,2:0:0:2:78:-7.4033,-0.60206,0 0|0:14:14,0:14:550:0:0:0,-4.21442,-49.8457 0|0:22:21,1:21:833:1:39:0,-2.7261,-71.3934 dDocent_Contig_11902 41 . G A 218.882 . AB=0.263158;ABP=21.525;AC=2;AF=0.333333;AN=6;AO=11;CIGAR=1X;DP=53;DPB=53;DPRA=0;EPP=26.8965;EPPR=94.2121;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=440;QR=1694;RO=42;RPL=0;RPP=26.8965;RPPR=94.2121;RPR=11;RUN=1;SAF=11;SAP=26.8965;SAR=0;SRF=42;SRP=94.2121;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:26:19,7:19:765:7:281:-17.8352,0,-61.3438 0/1:12:9,3:9:362:3:120:-7.57554,0,-29.3312 0/0:15:14,1:14:567:1:39:0,-0.618885,-47.4759 dDocent_Contig_11903 7 . A C 236.767 . AB=0.297297;ABP=16.2152;AC=2;AF=0.333333;AN=6;AO=13;CIGAR=1X;DP=84;DPB=84;DPRA=0;EPP=31.2394;EPPR=157.185;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=495;QR=2667;RO=71;RPL=0;RPP=31.2394;RPPR=157.185;RPR=13;RUN=1;SAF=13;SAP=31.2394;SAR=0;SRF=71;SRP=157.185;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:47:45,2:45:1697:2:77:0,-6.83927,-145.686 0/1:14:11,3:11:423:3:108:-5.85971,0,-34.2093 0/1:23:15,8:15:547:8:310:-21.3399,0,-42.636 dDocent_Contig_11904 8 . T C 122.126 . AB=0.127451;ABP=125.975;AC=1;AF=0.166667;AN=6;AO=13;CIGAR=1X;DP=187;DPB=187;DPRA=2.4;EPP=31.2394;EPPR=380.846;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=490;QR=6674;RO=174;RPL=0;RPP=31.2394;RPPR=380.846;RPR=13;RUN=1;SAF=13;SAP=31.2394;SAR=0;SRF=174;SRP=380.846;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:102:89,13:89:3425:13:490:-13.7355,0,-277.669 0/0:33:33,0:33:1266:0:0:0,-9.93399,-114.232 0/0:52:52,0:52:1983:0:0:0,-15.6536,-178.711 dDocent_Contig_11905 35 . C T 93.6942 . AB=0.1875;ABP=30.1537;AC=1;AF=0.25;AN=4;AO=7;CIGAR=1X;DP=48;DPB=48;DPRA=0;EPP=18.2106;EPPR=92.0407;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=2;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=0.926829;PAO=0;PQA=0;PQR=0;PRO=0;QA=265;QR=1549;RO=41;RPL=0;RPP=18.2106;RPPR=92.0407;RPR=7;RUN=1;SAF=7;SAP=18.2106;SAR=0;SRF=41;SRP=92.0407;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:32:26,6:26:983:6:226:-11.0681,0,-79.1464 ./.:.:.:.:.:.:.:. 0/0:16:15,1:15:566:1:39:0,-0.919915,-47.3817 dDocent_Contig_11907 14 . C A 248.474 . AB=0.19697;ABP=55.6521;AC=2;AF=0.333333;AN=6;AO=13;CIGAR=1X;DP=86;DPB=86;DPRA=1.65;EPP=31.2394;EPPR=161.528;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=518;QR=2919;RO=73;RPL=0;RPP=31.2394;RPPR=161.528;RPR=13;RUN=1;SAF=13;SAP=31.2394;SAR=0;SRF=73;SRP=161.528;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:44:33,11:33:1327:11:436:-26.35,0,-106.444 0/0:20:20,0:20:797:0:0:0,-6.0206,-72.048 0/1:22:20,2:20:795:2:82:-1.15702,0,-65.2437 dDocent_Contig_11908 21 . G C 59.2646 . AB=0.0957447;ABP=269.87;AC=3;AF=0.5;AN=6;AO=18;CIGAR=1X;DP=188;DPB=188;DPRA=0;EPP=42.0968;EPPR=372.161;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=1.38778e-17;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=730;QR=6794;RO=170;RPL=0;RPP=42.0968;RPPR=372.161;RPR=18;RUN=1;SAF=18;SAP=42.0968;SAR=0;SRF=170;SRP=372.161;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:129:118,11:118:4712:11:446:-1.66163,0,-385.151 0/1:10:9,1:9:357:1:39:-0.886264,0,-29.4808 0/1:49:43,6:43:1725:6:245:-7.679,0,-140.72 dDocent_Contig_11909 57 . T C 221.83 . AB=0.346154;ABP=8.35546;AC=2;AF=0.333333;AN=6;AO=9;CIGAR=1X;DP=29;DPB=29;DPRA=4.33333;EPP=22.5536;EPPR=46.4397;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=364;QR=792;RO=20;RPL=9;RPP=22.5536;RPPR=46.4397;RPR=0;RUN=1;SAF=9;SAP=22.5536;SAR=0;SRF=20;SRP=46.4397;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:19:12,7:12:483:7:282:-20.0332,0,-38.1011 0/1:7:5,2:5:196:2:82:-5.67247,0,-15.9067 0/0:3:3,0:3:113:0:0:0,-0.90309,-10.536 dDocent_Contig_11910 10 . T A 101.929 . AB=0.2;ABP=26.4622;AC=2;AF=0.333333;AN=6;AO=8;CIGAR=1X1M1X;DP=74;DPB=74;DPRA=0;EPP=20.3821;EPPR=146.327;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=325;QR=2635;RO=66;RPL=0;RPP=20.3821;RPPR=146.327;RPR=8;RUN=1;SAF=8;SAP=20.3821;SAR=0;SRF=66;SRP=146.327;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|0:44:42,2:42:1681:2:81:0,-5.55959,-143.833 0|1:5:3,2:3:114:2:82:-6.27453,0,-9.12633 0|1:25:21,4:21:840:4:162:-7.44121,0,-68.3842 dDocent_Contig_11912 12 . G A 232.705 . AB=0.191176;ABP=59.3408;AC=3;AF=0.5;AN=6;AO=13;CIGAR=1X;DP=68;DPB=68;DPRA=0;EPP=31.2394;EPPR=122.441;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=55.8727;NS=3;NUMALT=1;ODDS=3.46945e-18;PAIRED=1;PAIREDR=0.927273;PAO=0;PQA=0;PQR=0;PRO=0;QA=523;QR=2189;RO=55;RPL=0;RPP=31.2394;RPPR=122.441;RPR=13;RUN=1;SAF=13;SAP=31.2394;SAR=0;SRF=55;SRP=122.441;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:24:19,5:19:758:5:201:-11.2458,0,-61.3175 0/1:22:20,2:20:791:2:80:-0.969131,0,-64.8783 0/1:22:16,6:16:640:6:242:-15.5343,0,-40.9288 dDocent_Contig_11913 12 . G A 736.218 . AB=0.117647;ABP=24.5973;AC=0;AF=0;AN=6;AO=2;CIGAR=2X4M2X;DP=79;DPB=80;DPRA=0;EPP=7.35324;EPPR=48.6112;GTI=0;LEN=1;MEANALT=5;MQM=60;MQMR=60;NS=3;NUMALT=6;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=79;QR=813;RO=21;RPL=0;RPP=7.35324;RPPR=48.6112;RPR=2;RUN=1;SAF=2;SAP=7.35324;SAR=0;SRF=21;SRP=48.6112;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|0:17:2,0,2,0,2,7,3:2:79:0,2,0,2,7,3:0,81,0,79,267,122:-24.8948,-25.4968,-32.0031,-18.8102,-25.3177,-24.7156,-25.4968,-32.0031,-25.3177,-32.0031,-18.9894,-25.4968,-18.8102,-25.4968,-24.8948,-3.57149,-10.0831,-3.39188,-10.0831,-3.57149,-7.97588,-15.4215,-21.9298,-15.2422,-21.9298,-15.4215,0,-21.0267 0|0:39:14,3,9,1,0,1,11:14:552:3,9,1,0,1,11:36,307,37,0,40,434:-31.4171,-34.1024,-78.628,-12.4081,-56.3204,-55.1427,-32.6029,-76.5043,-54.8247,-77.7426,-35.6315,-79.5311,-57.852,-78.0436,-81.0711,-32.3336,-76.2353,-54.5556,-74.7472,-77.7747,-77.4737,0,-43.9411,-22.2524,-42.4451,-45.4733,-42.1759,-42.162 0|0:23:5,0,4,2,0,2,8:5:182:0,4,2,0,2,8:0,48,81,0,81,297:-22.8326,-24.3378,-39.2147,-22.3065,-37.1739,-35.9698,-17.6465,-32.5272,-30.489,-31.9252,-24.3378,-39.2147,-37.1739,-32.5272,-39.2147,-17.6465,-32.5272,-30.489,-25.8382,-32.5272,-31.9252,0,-14.8981,-12.8739,-8.20237,-14.8981,-8.20237,-12.4899 dDocent_Contig_11914 32 . G C 937.971 . AB=0.492958;ABP=3.04088;AC=3;AF=0.5;AN=6;AO=35;CIGAR=1M3I1M1X3M5D1M2I4M;DP=71;DPB=71;DPRA=0;EPP=79.0118;EPPR=79.0118;GTI=0;LEN=1;MEANALT=1.33333;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=1330;QR=1125;RO=35;RPL=0;RPP=79.0118;RPPR=79.0118;RPR=35;RUN=1;SAF=35;SAP=79.0118;SAR=0;SRF=0;SRP=79.0118;SRR=35;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|1:43:21,21:21:658:21:793:-58.6909,0,-46.5269 0|1:4:2,2:2:65:2:77:-6.10471,0,-4.96933 0|1:24:12,12:12:402:12:460:-34.5242,0,-29.2794 dDocent_Contig_11915 37 . G C 732.43 . AB=0.353659;ABP=18.2636;AC=3;AF=0.5;AN=6;AO=29;CIGAR=1X;DP=82;DPB=82;DPRA=0;EPP=65.983;EPPR=115.927;GTI=0;LEN=1;MEANALT=1.33333;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=0.923077;PAO=0;PQA=0;PQR=0;PRO=0;QA=1136;QR=2029;RO=52;RPL=0;RPP=65.983;RPPR=115.927;RPR=29;RUN=1;SAF=29;SAP=65.983;SAR=0;SRF=52;SRP=115.927;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:44:31,13:31:1221:13:515:-33.4481,0,-96.9187 0/1:20:7,13:7:284:13:502:-39.4993,0,-19.9134 0/1:18:14,3:14:524:3:119:-5.81844,0,-42.2676 dDocent_Contig_11916 45 . A G 40.5571 . AB=0.285714;ABP=5.80219;AC=1;AF=0.166667;AN=6;AO=2;CIGAR=1X;DP=23;DPB=23;DPRA=0.875;EPP=7.35324;EPPR=48.6112;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=81;QR=847;RO=21;RPL=0;RPP=7.35324;RPPR=48.6112;RPR=2;RUN=1;SAF=2;SAP=7.35324;SAR=0;SRF=21;SRP=48.6112;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:7:5,2:5:203:2:81:-5.57852,0,-16.5458 0/0:6:6,0:6:242:0:0:0,-1.80618,-22.1569 0/0:10:10,0:10:402:0:0:0,-3.0103,-36.5402 dDocent_Contig_11917 14 . A T 55.9591 . AB=0.2;ABP=18.6449;AC=2;AF=0.333333;AN=6;AO=4;CIGAR=1X;DP=49;DPB=49;DPRA=0.344828;EPP=11.6962;EPPR=100.727;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=159;QR=1803;RO=45;RPL=0;RPP=11.6962;RPPR=100.727;RPR=4;RUN=1;SAF=4;SAP=11.6962;SAR=0;SRF=45;SRP=100.727;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:29:29,0:29:1163:0:0:0,-8.72987,-104.948 0/1:5:4,1:4:157:1:39:-2.39141,0,-13.0027 0/1:15:12,3:12:483:3:120:-6.67224,0,-39.3058 dDocent_Contig_11919 106 . N T 262.612 . AB=0;ABP=0;AC=6;AF=1;AN=6;AO=8;CIGAR=2X;DP=8;DPB=8;DPRA=0;EPP=20.3821;EPPR=0;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=0;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=275;QR=0;RO=0;RPL=0;RPP=20.3821;RPPR=0;RPR=8;RUN=1;SAF=0;SAP=20.3821;SAR=8;SRF=0;SRP=0;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 1|1:1:0,1:0:0:1:35:-3.49863,-0.30103,0 1|1:1:0,1:0:0:1:35:-3.49863,-0.30103,0 1|1:6:0,6:0:0:6:205:-18.7852,-1.80618,0 dDocent_Contig_11920 8 . T A 136.476 . AB=0.368421;ABP=5.8675;AC=3;AF=0.5;AN=6;AO=7;CIGAR=1X2M1X;DP=19;DPB=19;DPRA=0;EPP=18.2106;EPPR=29.068;GTI=0;LEN=1;MEANALT=1;MQM=59.5714;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=0.857143;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=264;QR=467;RO=12;RPL=0;RPP=18.2106;RPPR=29.068;RPR=7;RUN=1;SAF=7;SAP=18.2106;SAR=0;SRF=12;SRP=29.068;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|1:9:6,3:6:232:3:114:-7.92056,0,-18.537 0|1:2:1,1:1:39:1:38:-3.19521,0,-3.2945 0|1:8:5,3:5:196:3:112:-8.03839,0,-15.607 dDocent_Contig_11921 98 . N T 67.5163 . AB=0;ABP=0;AC=2;AF=1;AN=2;AO=4;CIGAR=1X;DP=4;DPB=4;DPRA=0;EPP=11.6962;EPPR=0;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=0;NS=1;NUMALT=1;ODDS=7.37776;PAIRED=1;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=73;QR=0;RO=0;RPL=4;RPP=11.6962;RPPR=0;RPR=0;RUN=1;SAF=4;SAP=11.6962;SAR=0;SRF=0;SRP=0;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL ./.:.:.:.:.:.:.:. ./.:.:.:.:.:.:.:. 1/1:4:0,4:0:0:4:73:-6.75136,-1.20412,0 dDocent_Contig_11922 28 . T C 2463.08 . AB=0.710526;ABP=46.8969;AC=3;AF=0.5;AN=6;AO=81;CIGAR=1X2M1X;DP=114;DPB=114;DPRA=0;EPP=178.9;EPPR=63.8115;GTI=0;LEN=1;MEANALT=1.66667;MQM=60;MQMR=60;NS=3;NUMALT=2;ODDS=0;PAIRED=0.950617;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=3162;QR=1099;RO=28;RPL=0;RPP=178.9;RPPR=63.8115;RPR=81;RUN=1;SAF=81;SAP=178.9;SAR=0;SRF=28;SRP=63.8115;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|1:41:14,25,2:14:559:25,2:970,82:-75.4523,0,-38.5051,-72.8969,-39.2613,-118.339 0|1:44:9,35,0:9:350:35,0:1389,0:-112.027,0,-18.6141,-114.737,-29.1502,-143.497 0|1:29:5,21,3:5:190:21,3:803,122:-64.3514,0,-9.24247,-55.7903,-5.49093,-70.4674 dDocent_Contig_11923 11 . T C 157.729 . AB=0.211538;ABP=40.5935;AC=1;AF=0.166667;AN=6;AO=12;CIGAR=1X;DP=95;DPB=95;DPRA=1.19643;EPP=29.068;EPPR=183.243;GTI=0;LEN=1;MEANALT=1;MQM=40.75;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=0;PAIREDR=0.987952;PAO=0;PQA=0;PQR=0;PRO=0;QA=408;QR=3335;RO=83;RPL=0;RPP=29.068;RPPR=183.243;RPR=12;RUN=1;SAF=0;SAP=29.068;SAR=12;SRF=83;SRP=183.243;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:52:41,11:41:1658:11:375:-17.2957,0,-133.787 0/0:15:14,1:14:561:1:33:0,-1.31273,-47.6284 0/0:28:28,0:28:1116:0:0:0,-8.42884,-100.719 dDocent_Contig_11924 107 . N A 375.998 . AB=0;ABP=0;AC=4;AF=1;AN=4;AO=12;CIGAR=1X;DP=12;DPB=12;DPRA=0;EPP=29.068;EPPR=0;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=0;NS=2;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=407;QR=0;RO=0;RPL=0;RPP=29.068;RPPR=0;RPR=12;RUN=1;SAF=0;SAP=29.068;SAR=12;SRF=0;SRP=0;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 1/1:9:0,9:0:0:9:304:-27.6885,-2.70927,0 1/1:3:0,3:0:0:3:103:-9.61002,-0.90309,0 ./.:.:.:.:.:.:.:. dDocent_Contig_11925 24 . T A 613.11 . AB=0.25;ABP=61.6401;AC=2;AF=0.333333;AN=6;AO=27;CIGAR=1X;DP=114;DPB=114;DPRA=9;EPP=61.6401;EPPR=191.928;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=0.896552;PAO=0;PQA=0;PQR=0;PRO=0;QA=1074;QR=3448;RO=87;RPL=0;RPP=61.6401;RPPR=191.928;RPR=27;RUN=1;SAF=27;SAP=61.6401;SAR=0;SRF=87;SRP=191.928;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:73:60,13:60:2408:13:519:-25.0791,0,-194.889 0/0:6:6,0:6:215:0:0:0,-1.80618,-19.6834 0/1:35:21,14:21:825:14:555:-39.7548,0,-64.0261 dDocent_Contig_11926 185 . A T 627.88 . AB=0.59375;ABP=5.45321;AC=4;AF=0.666667;AN=6;AO=21;CIGAR=1X;DP=34;DPB=34;DPRA=0;EPP=48.6112;EPPR=29.068;GTI=0;LEN=1;MEANALT=1.33333;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=832;QR=475;RO=12;RPL=21;RPP=48.6112;RPPR=29.068;RPR=0;RUN=1;SAF=0;SAP=48.6112;SAR=21;SRF=0;SRP=29.068;SRR=12;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:20:6,13:6:229:13:523:-41.362,0,-14.9099 1/1:2:0,2:0:0:2:80:-7.59179,-0.60206,0 0/1:12:6,6:6:246:6:229:-17.3567,0,-18.9078 dDocent_Contig_11927 58 . G A 166.595 . AB=0.219512;ABP=31.0276;AC=2;AF=0.333333;AN=6;AO=10;CIGAR=1X;DP=54;DPB=54;DPRA=0;EPP=24.725;EPPR=98.5551;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=391;QR=1701;RO=44;RPL=10;RPP=24.725;RPPR=98.5551;RPR=0;RUN=1;SAF=10;SAP=24.725;SAR=0;SRF=44;SRP=98.5551;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:22:19,3:19:763:3:118:-4.38006,0,-62.3689 0/1:19:13,6:13:492:6:235:-15.8006,0,-38.8989 0/0:13:12,1:12:446:1:38:0,-0.116121,-36.6757 dDocent_Contig_11928 113 . C T 30.1925 . AB=0.142857;ABP=34.0313;AC=2;AF=0.333333;AN=6;AO=4;CIGAR=1X;DP=48;DPB=48;DPRA=0.7;EPP=11.6962;EPPR=98.5551;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=140;QR=1484;RO=44;RPL=0;RPP=11.6962;RPPR=98.5551;RPR=4;RUN=1;SAF=0;SAP=11.6962;SAR=4;SRF=0;SRP=98.5551;SRR=44;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:22:20,2:20:679:2:70:-0.0247359,0,-54.8055 0/1:6:4,2:4:140:2:70:-4.84122,0,-11.1387 0/0:20:20,0:20:665:0:0:0,-6.0206,-60.1608 dDocent_Contig_11929 114 . G A 601.192 . AB=0.585366;ABP=5.60547;AC=3;AF=0.5;AN=6;AO=24;CIGAR=1X;DP=41;DPB=41;DPRA=0;EPP=55.1256;EPPR=39.9253;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=855;QR=589;RO=17;RPL=0;RPP=55.1256;RPPR=39.9253;RPR=24;RUN=1;SAF=0;SAP=55.1256;SAR=24;SRF=0;SRP=39.9253;SRR=17;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:18:9,9:9:310:9:322:-23.9057,0,-22.8158 0/1:5:2,3:2:70:3:107:-8.47702,0,-5.14225 0/1:18:6,12:6:209:12:426:-33.2592,0,-13.7325 dDocent_Contig_11930 55 . G C 211.37 . AB=0.391304;ABP=5.3706;AC=2;AF=0.5;AN=4;AO=9;CIGAR=1X;DP=23;DPB=23;DPRA=0;EPP=22.5536;EPPR=33.4109;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=2;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=345;QR=563;RO=14;RPL=9;RPP=22.5536;RPPR=33.4109;RPR=0;RUN=1;SAF=9;SAP=22.5536;SAR=0;SRF=14;SRP=33.4109;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:14:8,6:8:322:6:243:-18.0335,0,-25.1339 ./.:.:.:.:.:.:.:. 0/1:9:6,3:6:241:3:102:-6.80239,0,-19.357 dDocent_Contig_11934 15 . A G 392.347 . AB=0.365854;ABP=9.41879;AC=2;AF=0.333333;AN=6;AO=15;CIGAR=1X;DP=47;DPB=47;DPRA=3.41667;EPP=35.5824;EPPR=72.4974;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=604;QR=1290;RO=32;RPL=0;RPP=35.5824;RPPR=72.4974;RPR=15;RUN=1;SAF=15;SAP=35.5824;SAR=0;SRF=32;SRP=72.4974;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:20:11,9:11:446:9:359:-26.6497,0,-34.475 0/0:6:6,0:6:243:0:0:0,-1.80618,-22.248 0/1:21:15,6:15:601:6:245:-16.1078,0,-48.1068 dDocent_Contig_11936 10 . T C 2825.72 . AB=0.43038;ABP=9.66215;AC=2;AF=0.333333;AN=6;AO=68;CIGAR=2X2M1X1M1X;DP=158;DPB=158;DPRA=0;EPP=150.67;EPPR=59.4686;GTI=0;LEN=1;MEANALT=3.66667;MQM=56.3676;MQMR=60;NS=3;NUMALT=4;ODDS=2.77556e-17;PAIRED=0.705882;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=2605;QR=1035;RO=26;RPL=0;RPP=150.67;RPPR=59.4686;RPR=68;RUN=1;SAF=68;SAP=150.67;SAR=0;SRF=26;SRP=59.4686;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|1:103:16,0,35,51,1:16:638:0,35,51,1:0,1346,1935,41:-211.132,-215.948,-268.492,-105.463,-158.008,-147.472,-57.9289,-110.474,0,-95.1212,-212.63,-265.174,-154.69,-107.156,-264.872 0|1:13:0,0,3,8,2:0:0:0,3,8,2:0,119,316,82:-35.6355,-35.6355,-35.6355,-25.8394,-25.8394,-24.9363,-9.78812,-9.78812,0,-7.37988,-28.8649,-28.8649,-19.0678,-3.01469,-28.2628 0|0:42:10,4,14,9,4:10:397:4,14,9,4:160,540,354,162:-41.3273,-31.1562,-62.633,0,-19.4988,-28.4652,-15.4131,-34.9128,-3.75744,-45.3846,-31.1641,-50.6639,-19.5067,-34.9207,-62.6409 dDocent_Contig_11937 125 . T G 162.964 . AB=0.227273;ABP=31.4368;AC=2;AF=0.333333;AN=6;AO=10;CIGAR=1X;DP=49;DPB=49;DPRA=4.4;EPP=24.725;EPPR=87.6977;GTI=0;LEN=1;MEANALT=1;MQM=40;MQMR=60;NS=3;NUMALT=1;ODDS=3.46945e-18;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=356;QR=1346;RO=39;RPL=0;RPP=24.725;RPPR=87.6977;RPR=10;RUN=1;SAF=0;SAP=24.725;SAR=10;SRF=0;SRP=87.6977;SRR=39;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:34:25,9:25:853:9:320:-17.8152,0,-66.8446 0/0:5:5,0:5:174:0:0:0,-1.50515,-16.0015 0/1:10:9,1:9:319:1:36:-0.444191,0,-26.0415 dDocent_Contig_11938 14 . T A 294.875 . AB=0.282609;ABP=21.8927;AC=2;AF=0.333333;AN=6;AO=13;CIGAR=1M1D1M1X;DP=50;DPB=46.75;DPRA=5.75;EPP=31.2394;EPPR=83.3548;GTI=0;LEN=1;MEANALT=1;MQM=49;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=521;QR=1459;RO=37;RPL=0;RPP=31.2394;RPPR=83.3548;RPR=13;RUN=1;SAF=13;SAP=31.2394;SAR=0;SRF=37;SRP=83.3548;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|1:28:18,10:18:707:10:400:-27.3768,0,-55.532 0|0:4:4,0:4:159:0:0:0,-1.20412,-14.6923 0|1:18:15,3:15:593:3:121:-5.63351,0,-48.2935 dDocent_Contig_11939 13 . G A 1101.16 . AB=0.398058;ABP=12.3076;AC=3;AF=0.5;AN=6;AO=41;CIGAR=1X;DP=103;DPB=103;DPRA=0;EPP=92.0407;EPPR=137.642;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=0.967742;PAO=0;PQA=0;PQR=0;PRO=0;QA=1618;QR=2451;RO=62;RPL=0;RPP=92.0407;RPPR=137.642;RPR=41;RUN=1;SAF=41;SAP=92.0407;SAR=0;SRF=62;SRP=137.642;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:57:37,20:37:1463:20:786:-53.8952,0,-114.749 0/1:16:9,7:9:346:7:279:-20.6638,0,-26.6771 0/1:30:16,14:16:642:14:553:-41.0804,0,-49.0841 dDocent_Contig_11940 14 . G A 855.265 . AB=0.0945946;ABP=108.649;AC=0;AF=0;AN=6;AO=7;CIGAR=1X2M1X;DP=121;DPB=121;DPRA=0;EPP=18.2106;EPPR=155.013;GTI=0;LEN=1;MEANALT=3;MQM=60;MQMR=60;NS=3;NUMALT=3;ODDS=1.38778e-17;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=283;QR=2753;RO=70;RPL=0;RPP=18.2106;RPPR=155.013;RPR=7;RUN=1;SAF=7;SAP=18.2106;SAR=0;SRF=70;SRP=155.013;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|0:47:40,0,3,4:40:1576:0,3,4:0,121,164:-1.49889,-13.5401,-143.179,-3.56888,-133.205,-132.302,0,-129.642,-119.667,-128.438 0|0:26:7,1,4,14:7:271:1,4,14:41,159,562:-44.2017,-42.9243,-64.878,-33.2191,-52.0881,-54.2687,0,-18.8653,-9.15768,-18.0365 0|0:48:23,6,3,16:23:906:6,3,16:242,118,629:-44.8042,-31.7772,-104.5,-42.0226,-96.6009,-115.647,0,-54.5745,-64.8192,-69.708 dDocent_Contig_11941 123 . T G 312.363 . 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AB=0.40625;ABP=5.45321;AC=2;AF=0.333333;AN=6;AO=13;CIGAR=1X;DP=46;DPB=46;DPRA=1.14286;EPP=31.2394;EPPR=74.6689;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=525;QR=1334;RO=33;RPL=0;RPP=31.2394;RPPR=74.6689;RPR=13;RUN=1;SAF=13;SAP=31.2394;SAR=0;SRF=33;SRP=74.6689;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:24:13,11:13:530:11:450:-33.6311,0,-40.8219 0/1:8:6,2:6:241:2:75:-4.71135,0,-19.6576 0/0:14:14,0:14:563:0:0:0,-4.21442,-51.0131 dDocent_Contig_11943 98 . N G 164.969 . AB=0;ABP=0;AC=2;AF=1;AN=2;AO=6;CIGAR=1X;DP=6;DPB=6;DPRA=0;EPP=16.0391;EPPR=0;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=0;NS=1;NUMALT=1;ODDS=8.76405;PAIRED=1;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=180;QR=0;RO=0;RPL=6;RPP=16.0391;RPPR=0;RPR=0;RUN=1;SAF=6;SAP=16.0391;SAR=0;SRF=0;SRP=0;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 1/1:6:0,6:0:0:6:180:-16.4969,-1.80618,0 ./.:.:.:.:.:.:.:. ./.:.:.:.:.:.:.:. dDocent_Contig_11944 21 . T A 673.458 . AB=0.571429;ABP=4.87156;AC=3;AF=0.5;AN=6;AO=24;CIGAR=1X;DP=42;DPB=42;DPRA=0;EPP=55.1256;EPPR=42.0968;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=938;QR=727;RO=18;RPL=0;RPP=55.1256;RPPR=42.0968;RPR=24;RUN=1;SAF=24;SAP=55.1256;SAR=0;SRF=18;SRP=42.0968;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:18:5,13:5:204:13:493:-39.2861,0,-13.3255 0/1:7:3,4:3:120:4:160:-12.6757,0,-9.0801 0/1:17:10,7:10:403:7:285:-20.9069,0,-31.512 dDocent_Contig_11945 28 . G T 117.674 . AB=0.3125;ABP=7.89611;AC=1;AF=0.166667;AN=6;AO=5;CIGAR=1X;DP=23;DPB=23;DPRA=4.57143;EPP=13.8677;EPPR=42.0968;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=197;QR=664;RO=18;RPL=0;RPP=13.8677;RPPR=42.0968;RPR=5;RUN=1;SAF=5;SAP=13.8677;SAR=0;SRF=18;SRP=42.0968;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:16:11,5:11:404:5:197:-13.2899,0,-31.885 0/0:5:5,0:5:182:0:0:0,-1.50515,-16.7343 0/0:2:2,0:2:78:0:0:0,-0.60206,-7.40347 dDocent_Contig_11950 123 . A G 43.6862 . AB=0.235294;ABP=13.3567;AC=1;AF=0.166667;AN=6;AO=4;CIGAR=1X;DP=36;DPB=36;DPRA=1.78947;EPP=11.6962;EPPR=72.4974;GTI=0;LEN=1;MEANALT=1;MQM=33;MQMR=60;NS=3;NUMALT=1;ODDS=1.73472e-18;PAIRED=0;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=137;QR=1135;RO=32;RPL=0;RPP=11.6962;RPPR=72.4974;RPR=4;RUN=1;SAF=0;SAP=11.6962;SAR=4;SRF=0;SRP=72.4974;SRR=32;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:18:18,0:18:639:0:0:0,-5.41854,-57.8393 0/0:1:1,0:1:36:0:0:0,-0.30103,-3.59827 0/1:17:13,4:13:460:4:137:-6.19175,0,-36.6181 dDocent_Contig_11951 10 . T G 1371.22 . AB=0.0566038;ABP=93.5156;AC=0;AF=0;AN=6;AO=3;CIGAR=1X2M2X1M1X2M1X5M1X3M;DP=138;DPB=138;DPRA=0;EPP=9.52472;EPPR=52.9542;GTI=0;LEN=1;MEANALT=6;MQM=48;MQMR=60;NS=3;NUMALT=8;ODDS=2.77556e-17;PAIRED=0;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=114;QR=884;RO=23;RPL=0;RPP=9.52472;RPPR=52.9542;RPR=3;RUN=1;SAF=3;SAP=9.52472;SAR=0;SRF=23;SRP=52.9542;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|0:38:15,0,7,2,0,0,0,3,7:15:572:0,7,2,0,0,0,3,7:0,206,58,0,0,0,51,247:-15.6295,-20.145,-67.1071,-3.71096,-50.6868,-48.5796,-15.5269,-62.492,-46.0724,-61.8899,-20.145,-67.1071,-50.6868,-62.492,-67.1071,-20.145,-67.1071,-50.6868,-62.492,-67.1071,-67.1071,-20.145,-67.1071,-50.6868,-62.492,-67.1071,-67.1071,-67.1071,-17.2792,-64.2363,-47.8203,-59.6222,-64.2363,-64.2363,-64.2363,-63.3332,0,-46.9882,-30.567,-42.3729,-46.9882,-46.9882,-46.9882,-44.1203,-44.881 0|0:53:3,5,22,0,0,3,0,5,14:3:115:5,22,0,0,3,0,5,14:182,697,0,0,114,0,132,471:-83.8801,-69.913,-77.8507,-28.7117,-23.2844,-31.5331,-84.7832,-79.3559,-38.1558,-94.2255,-84.7832,-79.3559,-38.1558,-94.2255,-94.2255,-75.5365,-70.109,-28.9079,-84.9791,-84.9791,-84.076,-84.7832,-79.3559,-38.1558,-94.2255,-94.2255,-84.9791,-94.2255,-75.2268,-69.7999,-28.6078,-84.6689,-84.6689,-75.4228,-84.6689,-83.1637,-46.6238,-41.196,0,-56.0676,-56.0676,-46.8198,-56.0676,-46.514,-51.8532 0|0:47:5,0,19,0,4,0,7,4,6:5:197:0,19,0,4,0,7,4,6:0,528,0,58,0,240,64,183:-43.1347,-44.6399,-60.8614,-2.83909,-19.0718,-13.3523,-44.6399,-60.8614,-19.0718,-60.8614,-41.2978,-57.5189,-15.7406,-57.5189,-56.3148,-44.6399,-60.8614,-19.0718,-60.8614,-57.5189,-60.8614,-25.5728,-41.7985,0,-41.7985,-38.4577,-41.7985,-39.6913,-41.1602,-57.3813,-15.6027,-57.3813,-54.0417,-57.3813,-38.32,-56.1772,-29.9783,-46.2026,-4.40985,-46.2026,-42.862,-46.2026,-27.1372,-42.7243,-44.3964 dDocent_Contig_11952 27 . T C 1597.27 . AB=0.708333;ABP=30.1537;AC=4;AF=0.666667;AN=6;AO=52;CIGAR=1X;DP=73;DPB=73;DPRA=0;EPP=115.927;EPPR=48.6112;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=2044;QR=849;RO=21;RPL=0;RPP=115.927;RPPR=48.6112;RPR=52;RUN=1;SAF=52;SAP=115.927;SAR=0;SRF=21;SRP=48.6112;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:38:12,26:12:485:26:1021:-80.743,0,-32.5625 1/1:1:0,1:0:0:1:38:-3.79727,-0.30103,0 0/1:34:9,25:9:364:25:985:-78.7084,0,-22.8894 dDocent_Contig_11954 47 . T C 189.988 . AB=0.470588;ABP=3.13803;AC=2;AF=0.333333;AN=6;AO=8;CIGAR=1X;DP=32;DPB=32;DPRA=0.566667;EPP=20.3821;EPPR=55.1256;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=299;QR=926;RO=24;RPL=0;RPP=20.3821;RPPR=55.1256;RPR=8;RUN=1;SAF=8;SAP=20.3821;SAR=0;SRF=24;SRP=55.1256;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:7:6,1:6:237:1:39:-1.78935,0,-19.5947 0/1:10:3,7:3:117:7:260:-20.7416,0,-7.89828 0/0:15:15,0:15:572:0:0:0,-4.51545,-51.8064 dDocent_Contig_11955 43 . G A 828.182 . AB=0.347826;ABP=21.515;AC=2;AF=0.333333;AN=6;AO=32;CIGAR=5M1X;DP=96;DPB=98;DPRA=11.5;EPP=72.4974;EPPR=135.47;GTI=0;LEN=1;MEANALT=1.5;MQM=60;MQMR=60;NS=3;NUMALT=2;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=1254;QR=2410;RO=61;RPL=0;RPP=72.4974;RPPR=135.47;RPR=32;RUN=1;SAF=32;SAP=72.4974;SAR=0;SRF=61;SRP=135.47;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|1:57:35,0,22:35:1394:0,22:0,868:-61.2722,-71.8083,-186.598,0,-115.186,-108.563 0|0:4:4,0,0:4:159:0,0:0,0:0,-1.20412,-14.692,-1.20412,-14.692,-14.692 0|1:35:22,3,10:22:857:3,10:118,386:-25.0687,-21.9841,-91.5146,0,-60.7218,-67.4175 dDocent_Contig_11956 25 . C A 73.2734 . AB=0.181818;ABP=32.0291;AC=2;AF=0.333333;AN=6;AO=6;CIGAR=1X;DP=64;DPB=64;DPRA=0.532258;EPP=16.0391;EPPR=128.956;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=223;QR=2336;RO=58;RPL=0;RPP=16.0391;RPPR=128.956;RPR=6;RUN=1;SAF=6;SAP=16.0391;SAR=0;SRF=58;SRP=128.956;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:26:22,4:22:889:4:154:-6.40501,0,-72.4902 0/1:7:5,2:5:199:2:69:-4.44468,0,-16.1808 0/0:31:31,0:31:1248:0:0:0,-9.33193,-112.587 dDocent_Contig_11958 110 . G A 1289.56 . AB=0.565217;ABP=6.40913;AC=3;AF=0.5;AN=6;AO=52;CIGAR=1X;DP=92;DPB=92;DPRA=0;EPP=115.927;EPPR=89.8692;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=1791;QR=1372;RO=40;RPL=0;RPP=115.927;RPPR=89.8692;RPR=52;RUN=1;SAF=0;SAP=115.927;SAR=52;SRF=0;SRP=89.8692;SRR=40;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:22:3,19:3:105:19:654:-52.5602,0,-3.1735 0/1:36:21,15:21:730:15:517:-36.0206,0,-55.1858 0/1:34:16,18:16:537:18:620:-45.8882,0,-38.4136 dDocent_Contig_11959 52 . C G 208.198 . AB=0.409091;ABP=4.58955;AC=2;AF=0.333333;AN=6;AO=9;CIGAR=1X;DP=23;DPB=23;DPRA=11;EPP=22.5536;EPPR=33.4109;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=336;QR=516;RO=14;RPL=9;RPP=22.5536;RPPR=33.4109;RPR=0;RUN=1;SAF=9;SAP=22.5536;SAR=0;SRF=14;SRP=33.4109;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:13:8,5:8:305:5:190:-13.5535,0,-23.8953 0/0:1:1,0:1:39:0:0:0,-0.30103,-3.89656 0/1:9:5,4:5:172:4:146:-10.7884,0,-13.1066 dDocent_Contig_11963 21 . C T 70.1316 . AB=0.2;ABP=10.8276;AC=2;AF=0.333333;AN=6;AO=4;CIGAR=1M2I2X2M1X;DP=42;DPB=45.6667;DPRA=0;EPP=3.0103;EPPR=70.3259;GTI=0;LEN=1;MEANALT=2;MQM=26.5;MQMR=60;NS=3;NUMALT=3;ODDS=0;PAIRED=0;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=155;QR=1237;RO=31;RPL=0;RPP=11.6962;RPPR=70.3259;RPR=4;RUN=1;SAF=2;SAP=3.0103;SAR=2;SRF=31;SRP=70.3259;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|1:20:18,2,0,0:18:725:2,0,0:80,0,0:-1.17579,0,-59.5565,-6.59433,-60.1586,-66.3718,-6.59433,-60.1586,-66.3718,-66.3718 0|1:10:3,3,2,2:3:118:3,2,2:118,80,75:-8.81513,0,-8.81513,-3.17247,-3.17247,-12.2858,-4.28658,-4.28658,-7.45373,-13.3908 0|0:12:10,0,0,2:10:394:0,0,2:0,0,80:0,-3.0103,-35.6111,-3.0103,-35.6111,-35.6111,-0.386403,-33.1943,-33.1943,-32.5922 dDocent_Contig_11964 22 . A G 493.812 . AB=0.128205;ABP=49.8362;AC=3;AF=0.5;AN=6;AO=5;CIGAR=1X3M;DP=47;DPB=47;DPRA=0;EPP=13.8677;EPPR=52.9542;GTI=0;LEN=1;MEANALT=2;MQM=60;MQMR=60;NS=3;NUMALT=2;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=202;QR=924;RO=23;RPL=0;RPP=13.8677;RPPR=52.9542;RPR=5;RUN=1;SAF=5;SAP=13.8677;SAR=0;SRF=23;SRP=52.9542;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|1:14:7,5,2:7:279:5,2:198,81:-14.1831,0,-21.4652,-9.60855,-16.2898,-31.9833 0|1:8:6,2,0:6:242:2,0:80,0:-5.18355,0,-19.7491,-6.98973,-20.3511,-26.9405 0|1:25:10,12,3:10:403:12,3:469,121:-35.5374,0,-29.605,-28.5709,-23.243,-60.8909 dDocent_Contig_11966 43 . C T 37.471 . AB=0.115942;ABP=91.4113;AC=2;AF=0.333333;AN=6;AO=8;CIGAR=1X;DP=81;DPB=81;DPRA=2.875;EPP=20.3821;EPPR=161.528;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=0;PAIREDR=0.958904;PAO=0;PQA=0;PQR=0;PRO=0;QA=303;QR=2879;RO=73;RPL=0;RPP=20.3821;RPPR=161.528;RPR=8;RUN=1;SAF=8;SAP=20.3821;SAR=0;SRF=73;SRP=161.528;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:40:35,5:35:1397:5:181:-4.59516,0,-113.945 0/0:12:12,0:12:472:0:0:0,-3.61236,-42.8308 0/1:29:26,3:26:1010:3:122:-2.64262,0,-82.4625 dDocent_Contig_11967 140 . C A 1627.25 . AB=0.572816;ABP=7.75381;AC=4;AF=0.666667;AN=6;AO=62;CIGAR=1X;DP=106;DPB=106;DPRA=0;EPP=137.642;EPPR=98.5551;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=6.93889e-18;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=2181;QR=1577;RO=44;RPL=0;RPP=137.642;RPPR=98.5551;RPR=62;RUN=1;SAF=0;SAP=137.642;SAR=62;SRF=0;SRP=98.5551;SRR=44;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:89:38,51:38:1369:51:1801:-135.581,0,-96.694 1/1:3:0,3:0:0:3:105:-9.79609,-0.90309,0 0/1:14:6,8:6:208:8:275:-20.8697,0,-14.8398 dDocent_Contig_11968 23 . T C 769.172 . AB=0.291667;ABP=39.2015;AC=2;AF=0.333333;AN=6;AO=28;CIGAR=3M1X6M;DP=115;DPB=95.8;DPRA=0;EPP=63.8115;EPPR=139.813;GTI=0;LEN=1;MEANALT=2;MQM=60;MQMR=60;NS=3;NUMALT=2;ODDS=1.38778e-17;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=1141;QR=2460;RO=63;RPL=0;RPP=63.8115;RPPR=139.813;RPR=28;RUN=1;SAF=28;SAP=63.8115;SAR=0;SRF=63;SRP=139.813;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|1:64:33,15,16:33:1284:15,16:506,655:-44.1593,-13.1273,-114.118,0,-64.5709,-100.739 0|0:19:17,2,0:17:671:2,0:78,0:-1.6839,0,-55.0047,-6.80141,-55.6067,-62.018 0|1:32:13,7,12:13:505:7,12:223,486:-36.216,-22.2116,-61.5913,0,-23.6156,-37.9284 dDocent_Contig_11969 28 . C T 240.107 . AB=0.37037;ABP=6.95112;AC=2;AF=0.333333;AN=6;AO=10;CIGAR=1X;DP=43;DPB=43;DPRA=0.84375;EPP=24.725;EPPR=74.6689;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=388;QR=1292;RO=33;RPL=0;RPP=24.725;RPPR=74.6689;RPR=10;RUN=1;SAF=10;SAP=24.725;SAR=0;SRF=33;SRP=74.6689;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:16:16,0:16:624:0:0:0,-4.81648,-56.4893 0/1:16:9,7:9:352:7:272:-20.0286,0,-27.2224 0/1:11:8,3:8:316:3:116:-7.50495,0,-25.4903 dDocent_Contig_11970 106 . N T 104.487 . AB=0;ABP=0;AC=4;AF=1;AN=4;AO=3;CIGAR=2X;DP=3;DPB=3;DPRA=0;EPP=9.52472;EPPR=0;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=0;NS=2;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=105;QR=0;RO=0;RPL=0;RPP=9.52472;RPPR=0;RPR=3;RUN=1;SAF=0;SAP=9.52472;SAR=3;SRF=0;SRP=0;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 1|1:1:0,1:0:0:1:35:-3.49863,-0.30103,0 .:.:.:.:.:.:.:. 1|1:2:0,2:0:0:2:70:-6.6474,-0.60206,0 dDocent_Contig_11971 130 . C T 747.457 . AB=0.507246;ABP=3.04177;AC=3;AF=0.5;AN=6;AO=35;CIGAR=5M1X1M1X;DP=69;DPB=67.875;DPRA=0;EPP=79.0118;EPPR=52.9542;GTI=0;LEN=1;MEANALT=2.33333;MQM=41.5714;MQMR=60;NS=3;NUMALT=2;ODDS=0;PAIRED=0;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=1246;QR=813;RO=23;RPL=0;RPP=79.0118;RPPR=52.9542;RPR=35;RUN=1;SAF=0;SAP=79.0118;SAR=35;SRF=0;SRP=52.9542;SRR=23;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|1:41:13,6,20:13:453:6,20:202,699:-39.9454,-27.4799,-62.5354,0,-20.4772,-30.8205 0|1:6:0,3,3:0:0:3,3:103,109:-16.4964,-8.12221,-7.21912,-8.70693,0,-7.80384 0|1:22:10,0,12:10:360:0,12:0,438:-23.8268,-26.8371,-56.2478,0,-29.734,-26.1216 dDocent_Contig_11972 19 . T G 1288.49 . AB=0.651685;ABP=20.7969;AC=3;AF=0.5;AN=6;AO=58;CIGAR=1X;DP=89;DPB=89;DPRA=0;EPP=128.956;EPPR=70.3259;GTI=0;LEN=1;MEANALT=1;MQM=43.9483;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=0.672414;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=2319;QR=1239;RO=31;RPL=0;RPP=128.956;RPPR=70.3259;RPR=58;RUN=1;SAF=58;SAP=128.956;SAR=0;SRF=31;SRP=70.3259;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:45:19,26:19:764:26:1028:-37.2958,0,-55.533 0/1:21:10,11:10:395:11:439:-30.9106,0,-29.5862 0/1:23:2,21:2:80:21:852:-64.8265,0,-0.6681 dDocent_Contig_11973 27 . T A 414.747 . AB=0.5;ABP=3.0103;AC=2;AF=0.333333;AN=6;AO=17;CIGAR=1M1I2M1X1M3X;DP=46;DPB=48.125;DPRA=1.41667;EPP=39.9253;EPPR=65.983;GTI=0;LEN=1;MEANALT=1;MQM=47.9412;MQMR=60;NS=3;NUMALT=1;ODDS=1.73472e-18;PAIRED=0.823529;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=666;QR=1120;RO=29;RPL=0;RPP=39.9253;RPPR=65.983;RPR=17;RUN=1;SAF=17;SAP=39.9253;SAR=0;SRF=29;SRP=65.983;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|1:31:15,16:15:570:16:629:-42.9919,0,-42.3058 0|1:3:2,1:2:80:1:37:-0.594265,0,-6.6887 0|0:12:12,0:12:470:0:0:0,-3.61236,-42.6502 dDocent_Contig_11974 15 . A T 691.364 . AB=0.242188;ABP=76.9082;AC=3;AF=0.5;AN=6;AO=31;CIGAR=1X;DP=128;DPB=128;DPRA=0;EPP=70.3259;EPPR=213.643;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=0.935484;PAIREDR=0.948454;PAO=0;PQA=0;PQR=0;PRO=0;QA=1245;QR=3820;RO=97;RPL=0;RPP=70.3259;RPPR=213.643;RPR=31;RUN=1;SAF=31;SAP=70.3259;SAR=0;SRF=97;SRP=213.643;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:97:77,20:77:3032:20:816:-44.5538,0,-243.768 0/1:3:1,2:1:31:2:80:-6.6887,0,-2.19636 0/1:28:19,9:19:757:9:349:-23.3333,0,-60.0232 dDocent_Contig_11975 33 . G A 52.6903 . AB=0.666667;ABP=3.73412;AC=1;AF=0.166667;AN=6;AO=2;CIGAR=1X;DP=21;DPB=21;DPRA=0.333333;EPP=7.35324;EPPR=44.2683;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=0;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=81;QR=744;RO=19;RPL=0;RPP=7.35324;RPPR=44.2683;RPR=2;RUN=1;SAF=2;SAP=7.35324;SAR=0;SRF=19;SRP=44.2683;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:3:1,2:1:41:2:81:-6.78264,0,-3.19148 0/0:13:13,0:13:499:0:0:0,-3.91339,-45.2447 0/0:5:5,0:5:204:0:0:0,-1.50515,-18.744 dDocent_Contig_11976 81 . G A 73.1657 . AB=0.25;ABP=11.6962;AC=1;AF=0.166667;AN=6;AO=7;CIGAR=1X;DP=97;DPB=97;DPRA=0;EPP=18.2106;EPPR=198.443;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=262;QR=3346;RO=90;RPL=7;RPP=18.2106;RPPR=198.443;RPR=0;RUN=1;SAF=7;SAP=18.2106;SAR=0;SRF=90;SRP=198.443;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:40:38,2:38:1452:2:74:0,-5.01532,-123.935 0/1:16:12,4:12:447:4:151:-9.14048,0,-35.757 0/0:41:40,1:40:1447:1:37:0,-8.6444,-126.821 dDocent_Contig_11979 74 . G C 32.0702 . AB=0.214286;ABP=12.937;AC=1;AF=0.166667;AN=6;AO=3;CIGAR=1X1M1X;DP=22;DPB=22;DPRA=3.5;EPP=9.52472;EPPR=42.0968;GTI=0;LEN=1;MEANALT=1;MQM=33;MQMR=60;NS=3;NUMALT=1;ODDS=1.73472e-18;PAIRED=0;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=116;QR=690;RO=18;RPL=3;RPP=9.52472;RPPR=42.0968;RPR=0;RUN=1;SAF=0;SAP=9.52472;SAR=3;SRF=18;SRP=42.0968;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|1:14:11,3:11:435:3:116:-4.72922,0,-35.2917 0|0:2:2,0:2:80:0:0:0,-0.60206,-7.59179 0|0:6:5,0:5:175:0:0:0,-1.50515,-15.8093 dDocent_Contig_11980 19 . T G 5026.53 . AB=0.217033;ABP=762.477;AC=3;AF=0.5;AN=6;AO=237;CIGAR=1X;DP=1092;DPB=1092;DPRA=0;EPP=491.921;EPPR=1613.04;GTI=0;LEN=1;MEANALT=2;MQM=59.9662;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=0.734177;PAIREDR=0.758865;PAO=0;PQA=0;PQR=0;PRO=0;QA=9276;QR=29966;RO=846;RPL=0;RPP=517.649;RPPR=1840.08;RPR=237;RUN=1;SAF=234;SAP=491.921;SAR=3;SRF=819;SRP=1613.04;SRR=27;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:456:345,106:345:12314:106:4140:-236.423,0,-971.734 0/1:290:235,53:235:8229:53:2058:-98.3509,0,-653.455 0/1:346:266,78:266:9423:78:3078:-173.401,0,-744.233 dDocent_Contig_11981 62 . C T 1462.79 . AB=0.620253;ABP=12.9331;AC=3;AF=0.5;AN=6;AO=49;CIGAR=1X;DP=79;DPB=79;DPRA=0;EPP=109.412;EPPR=68.1545;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=1940;QR=1175;RO=30;RPL=49;RPP=109.412;RPPR=68.1545;RPR=0;RUN=1;SAF=49;SAP=109.412;SAR=0;SRF=30;SRP=68.1545;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:50:14,36:14:544:36:1435:-114.347,0,-34.2451 0/1:3:2,1:2:82:1:36:-2.69518,0,-6.87659 0/1:26:14,12:14:549:12:469:-34.7313,0,-41.9177 dDocent_Contig_11982 12 . T C 621.22 . AB=0.595745;ABP=6.75262;AC=3;AF=0.5;AN=6;AO=28;CIGAR=1X1M3D1M2X;DP=47;DPB=35.375;DPRA=0;EPP=63.8115;EPPR=37.7539;GTI=0;LEN=1;MEANALT=1.33333;MQM=36.5;MQMR=60;NS=3;NUMALT=2;ODDS=0;PAIRED=0;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=1080;QR=635;RO=16;RPL=0;RPP=63.8115;RPPR=37.7539;RPR=28;RUN=1;SAF=28;SAP=63.8115;SAR=0;SRF=16;SRP=37.7539;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|1:18:8,7,3:8:317:7,3:264,120:-14.1939,0,-23.9831,-6.68641,-16.2041,-31.9285 0|1:15:3,12,0:3:119:12,0:465,0:-33.2702,0,-6.57994,-34.1732,-10.1923,-43.9792 0|1:14:5,9,0:5:199:9,0:351,0:-20.1808,0,-14.0739,-21.686,-16.7832,-38.1074 dDocent_Contig_11983 9 . T C 306.419 . AB=0.433333;ABP=4.16842;AC=3;AF=0.5;AN=6;AO=13;CIGAR=1X;DP=30;DPB=30;DPRA=0;EPP=16.5402;EPPR=39.9253;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=0.153846;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=490;QR=653;RO=17;RPL=0;RPP=31.2394;RPPR=39.9253;RPR=13;RUN=1;SAF=11;SAP=16.5402;SAR=2;SRF=17;SRP=39.9253;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:9:3,6:3:117:6:227:-18.0836,0,-8.20111 0/1:10:5,5:5:191:5:189:-14.3643,0,-14.5478 0/1:11:9,2:9:345:2:74:-3.7141,0,-28.0969 dDocent_Contig_11984 28 . A G 43.0217 . AB=0.114286;ABP=93.4676;AC=2;AF=0.333333;AN=6;AO=8;CIGAR=1X;DP=102;DPB=102;DPRA=1.09375;EPP=20.3821;EPPR=204.957;GTI=0;LEN=1;MEANALT=1.5;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=313;QR=3604;RO=93;RPL=0;RPP=20.3821;RPPR=204.957;RPR=8;RUN=1;SAF=8;SAP=20.3821;SAR=0;SRF=93;SRP=204.957;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:32:32,0:32:1229:0:0:0,-9.63296,-110.888 0/1:30:26,3:26:1028:3:122:-2.23399,0,-83.6784 0/1:40:35,5:35:1347:5:191:-5.51381,0,-109.451 dDocent_Contig_11985 20 . G A 273.263 . AB=0.380952;ABP=5.59539;AC=4;AF=0.666667;AN=6;AO=10;CIGAR=1X;DP=23;DPB=23;DPRA=0;EPP=16.9077;EPPR=31.2394;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=0.8;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=400;QR=513;RO=13;RPL=0;RPP=24.725;RPPR=31.2394;RPR=10;RUN=1;SAF=9;SAP=16.9077;SAR=1;SRF=13;SRP=31.2394;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:8:6,2:6:237:2:82:-5.37144,0,-19.2938 1/1:2:0,2:0:0:2:82:-7.77968,-0.60206,0 0/1:13:7,6:7:276:6:236:-17.6977,0,-21.2958 dDocent_Contig_11986 21 . G C 123.682 . AB=0.384615;ABP=4.51363;AC=1;AF=0.166667;AN=6;AO=5;CIGAR=2X;DP=56;DPB=56;DPRA=0.604651;EPP=13.8677;EPPR=113.755;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=197;QR=2015;RO=51;RPL=0;RPP=13.8677;RPPR=113.755;RPR=5;RUN=1;SAF=5;SAP=13.8677;SAR=0;SRF=51;SRP=113.755;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|0:32:32,0:32:1258:0:0:0,-9.63296,-113.496 0|0:11:11,0:11:434:0:0:0,-3.31133,-39.4142 0|1:13:8,5:8:323:5:197:-14.1921,0,-25.5252 dDocent_Contig_11987 3 . A C 92.3784 . AB=0;ABP=0;AC=2;AF=1;AN=2;AO=3;CIGAR=2I1X1M1X;DP=3;DPB=5;DPRA=0;EPP=9.52472;EPPR=0;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=0;NS=1;NUMALT=1;ODDS=6.68461;PAIRED=1;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=99;QR=0;RO=0;RPL=0;RPP=9.52472;RPPR=0;RPR=3;RUN=1;SAF=3;SAP=9.52472;SAR=0;SRF=0;SRP=0;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL .:.:.:.:.:.:.:. .:.:.:.:.:.:.:. 1|1:3:0,3:0:0:3:99:-9.2373,-0.90309,0 dDocent_Contig_11988 15 . C T 142.087 . AB=0.176471;ABP=49.3776;AC=3;AF=0.5;AN=6;AO=9;CIGAR=1X;DP=51;DPB=51;DPRA=0;EPP=22.5536;EPPR=94.2121;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=35.7857;NS=3;NUMALT=1;ODDS=3.46945e-18;PAIRED=0;PAIREDR=0.47619;PAO=0;PQA=0;PQR=0;PRO=0;QA=360;QR=1700;RO=42;RPL=0;RPP=22.5536;RPPR=94.2121;RPR=9;RUN=1;SAF=9;SAP=22.5536;SAR=0;SRF=42;SRP=94.2121;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:20:15,5:15:603:5:204:-12.7234,0,-26.0991 0/1:12:11,1:11:448:1:41:-0.482207,0,-37.0636 0/1:19:16,3:16:649:3:115:-5.00364,0,-20.1091 dDocent_Contig_11989 33 . G T 233.458 . AB=0.153846;ABP=124.78;AC=2;AF=0.333333;AN=6;AO=18;CIGAR=1X;DP=162;DPB=162;DPRA=1.3;EPP=42.0968;EPPR=313.531;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=682;QR=5626;RO=143;RPL=0;RPP=42.0968;RPPR=313.531;RPR=18;RUN=1;SAF=18;SAP=42.0968;SAR=0;SRF=143;SRP=313.531;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:92:77,15:77:3015:15:564:-23.388,0,-243.742 0/1:25:22,3:22:886:3:118:-3.47583,0,-72.5228 0/0:45:44,0:44:1725:0:0:0,-13.2453,-155.155 dDocent_Contig_11990 11 . C T 218.075 . AB=0.0962963;ABP=194.116;AC=1;AF=0.166667;AN=6;AO=13;CIGAR=1X3M2D1M1X;DP=152;DPB=145;DPRA=3.97059;EPP=31.2394;EPPR=270.101;GTI=0;LEN=1;MEANALT=2.5;MQM=60;MQMR=60;NS=3;NUMALT=2;ODDS=0;PAIRED=0.0769231;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=515;QR=4874;RO=123;RPL=0;RPP=31.2394;RPPR=270.101;RPR=13;RUN=1;SAF=13;SAP=31.2394;SAR=0;SRF=123;SRP=270.101;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|0:52:36,5,11:36:1441:5,11:199,434:-20.6727,-15.1094,-132.35,0,-102.325,-115.4 0|0:17:16,0,1:16:635:0,1:0,40:0,-4.81648,-57.0883,-1.12434,-53.7954,-53.4943 0|1:83:71,8,3:71:2798:8,3:316,110:-4.65717,0,-227.816,-17.0496,-221.239,-246.34 dDocent_Contig_11991 10 . T C 5301.6 . AB=0.0385289;ABP=1059.19;AC=0;AF=0;AN=6;AO=22;CIGAR=1X2M1X2M1X5M1X10M1X1M1X;DP=571;DPB=571;DPRA=0;EPP=50.7827;EPPR=55.1256;GTI=0;LEN=1;MEANALT=36;MQM=55.4545;MQMR=60;NS=3;NUMALT=6;ODDS=2.22045e-16;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=858;QR=931;RO=24;RPL=0;RPP=50.7827;RPPR=55.1256;RPR=22;RUN=1;SAF=22;SAP=50.7827;SAR=0;SRF=24;SRP=55.1256;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|0:292:15,6,11,3,19,72,24:15:592:6,11,3,19,72,24:232,430,119,715,2747,918:-247.38,-232.84,-279.747,-216.633,-246.29,-262.035,-242.099,-271.757,-255.55,-289.909,-193.324,-222.981,-206.775,-232.241,-236.317,-26.5973,-56.2545,-40.0477,-65.5137,-16.7389,-53.6357,-176.585,-206.243,-190.036,-215.502,-166.727,0,-218.073 0|0:76:2,4,7,4,4,14,14:2:72:4,7,4,4,14,14:161,268,88,114,540,545:-82.66,-69.9908,-74.6607,-61.3223,-53.9247,-65.089,-77.6349,-70.2378,-61.5698,-82.3045,-74.2161,-66.8189,-58.1505,-74.4633,-78.8858,-38.9171,-31.5192,-22.8504,-39.1658,-35.7459,-40.5768,-38.4737,-31.0757,-22.4069,-38.7223,-35.3024,0,-40.1334 0|0:203:7,8,4,0,14,54,17:7:267:8,4,0,14,54,17:314,160,0,539,2112,680:-205.643,-181.926,-201.42,-194.585,-190.663,-215.283,-207.75,-203.828,-216.487,-229.652,-163.498,-159.576,-172.235,-185.4,-181.185,-34.1134,-30.1914,-42.8504,-56.0155,-11.7629,-39.7599,-151.735,-147.813,-160.472,-173.637,-129.385,0,-168.52 dDocent_Contig_11992 58 . G A 97.9304 . AB=0.179487;ABP=37.8095;AC=2;AF=0.333333;AN=6;AO=8;CIGAR=1X;DP=52;DPB=52;DPRA=0;EPP=20.3821;EPPR=90.0666;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=307;QR=1711;RO=44;RPL=8;RPP=20.3821;RPPR=90.0666;RPR=0;RUN=1;SAF=8;SAP=20.3821;SAR=0;SRF=44;SRP=98.5551;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:26:21,5:21:807:5:193:-9.91352,0,-65.1206 0/1:13:11,2:11:434:2:77:-3.39575,0,-35.5013 0/0:13:12,1:12:470:1:37:0,-0.215561,-38.953 dDocent_Contig_11994 89 . G A 159.776 . AB=0.32;ABP=10.0459;AC=2;AF=0.333333;AN=6;AO=8;CIGAR=1X;DP=38;DPB=38;DPRA=0.961538;EPP=20.3821;EPPR=68.1545;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=290;QR=1071;RO=30;RPL=8;RPP=20.3821;RPPR=68.1545;RPR=0;RUN=1;SAF=8;SAP=20.3821;SAR=0;SRF=30;SRP=68.1545;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:19:12,7:12:430:7:253:-17.4002,0,-33.3206 0/1:6:5,1:5:176:1:37:-1.89165,0,-14.3789 0/0:13:13,0:13:465:0:0:0,-3.91339,-42.1883 dDocent_Contig_11995 108 . G T 30.0545 . AB=0.272727;ABP=7.94546;AC=2;AF=0.333333;AN=6;AO=3;CIGAR=1X;DP=19;DPB=19;DPRA=0.6875;EPP=9.52472;EPPR=37.7539;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=101;QR=548;RO=16;RPL=0;RPP=9.52472;RPPR=37.7539;RPR=3;RUN=1;SAF=0;SAP=9.52472;SAR=3;SRF=0;SRP=37.7539;SRR=16;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:8:8,0:8:277:0:0:0,-2.40824,-25.267 0/1:2:1,1:1:30:1:32:-2.59725,0,-2.39751 0/1:9:7,2:7:241:2:69:-3.84339,0,-19.3173 dDocent_Contig_11996 39 . A G 219.83 . AB=0.277778;ABP=10.7311;AC=3;AF=0.5;AN=6;AO=8;CIGAR=1X3M1X;DP=27;DPB=27;DPRA=1.75;EPP=20.3821;EPPR=44.2683;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=313;QR=766;RO=19;RPL=0;RPP=20.3821;RPPR=44.2683;RPR=8;RUN=1;SAF=8;SAP=20.3821;SAR=0;SRF=19;SRP=44.2683;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|1:18:13,5:13:523:5:196:-12.5958,0,-41.9993 1|1:3:0,3:0:0:3:117:-10.9099,-0.90309,0 0|0:6:6,0:6:243:0:0:0,-1.80618,-22.248 dDocent_Contig_11997 62 . A G 57.2767 . AB=0.214286;ABP=12.937;AC=1;AF=0.166667;AN=6;AO=3;CIGAR=1X;DP=28;DPB=28;DPRA=2;EPP=9.52472;EPPR=57.2971;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=123;QR=1003;RO=25;RPL=3;RPP=9.52472;RPPR=57.2971;RPR=0;RUN=1;SAF=3;SAP=9.52472;SAR=0;SRF=25;SRP=57.2971;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:14:11,3:11:437:3:123:-7.25037,0,-35.469 0/0:3:3,0:3:121:0:0:0,-0.90309,-11.2802 0/0:11:11,0:11:445:0:0:0,-3.31133,-40.4063 dDocent_Contig_11998 12 . A G 297.582 . AB=0.270833;ABP=24.906;AC=2;AF=0.333333;AN=6;AO=13;CIGAR=1X;DP=57;DPB=57;DPRA=2.66667;EPP=31.2394;EPPR=98.5551;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=522;QR=1732;RO=44;RPL=0;RPP=31.2394;RPPR=98.5551;RPR=13;RUN=1;SAF=13;SAP=31.2394;SAR=0;SRF=44;SRP=98.5551;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:38:27,11:27:1069:11:441:-28.6053,0,-85.0576 0/0:9:9,0:9:357:0:0:0,-2.70927,-32.4909 0/1:10:8,2:8:306:2:81:-4.67543,0,-24.8817 dDocent_Contig_11999 16 . G T 80.2424 . AB=0.4;ABP=3.44459;AC=1;AF=0.166667;AN=6;AO=2;CIGAR=1M1X6M;DP=52;DPB=48.25;DPRA=0.178571;EPP=7.35324;EPPR=98.5551;GTI=0;LEN=1;MEANALT=2;MQM=60;MQMR=60;NS=3;NUMALT=2;ODDS=0;PAIRED=0;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=75;QR=1728;RO=44;RPL=0;RPP=7.35324;RPPR=98.5551;RPR=2;RUN=1;SAF=2;SAP=7.35324;SAR=0;SRF=44;SRP=98.5551;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|0:19:15,4,0:15:590:4,0:127,0:-6.02212,0,-47.7225,-10.5376,-48.9267,-59.131 0|1:5:2,0,2:2:80:0,2:0,75:-5.52493,-6.12699,-12.7238,0,-6.59016,-5.9881 0|0:28:27,1,0:27:1058:1,0:32,0:0,-5.22953,-92.3196,-8.12781,-92.6207,-95.1965 dDocent_Contig_12000 111 . C T 41.3441 . AB=0.222222;ABP=21.1059;AC=2;AF=0.333333;AN=6;AO=6;CIGAR=1X;DP=32;DPB=32;DPRA=2.7;EPP=16.0391;EPPR=59.4686;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=169;QR=837;RO=26;RPL=0;RPP=16.0391;RPPR=59.4686;RPR=6;RUN=1;SAF=0;SAP=16.0391;SAR=6;SRF=0;SRP=59.4686;SRR=26;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:14:11,3:11:330:3:95:-4.64996,0,-25.7762 0/0:5:5,0:5:170:0:0:0,-1.50515,-15.6349 0/1:13:10,3:10:337:3:74:-2.99246,0,-26.7435 dDocent_Contig_12001 98 . G A 39.678 . AB=0.212121;ABP=74.2741;AC=4;AF=0.666667;AN=6;AO=22;CIGAR=3X3M3X2M1X2M;DP=102;DPB=102.214;DPRA=0;EPP=50.7827;EPPR=87.6977;GTI=0;LEN=1;MEANALT=7;MQM=6;MQMR=60;NS=3;NUMALT=3;ODDS=1.38778e-17;PAIRED=0;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=132;QR=1505;RO=39;RPL=0;RPP=50.7827;RPPR=87.6977;RPR=22;RUN=1;SAF=0;SAP=50.7827;SAR=22;SRF=0;SRP=87.6977;SRR=39;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|1:83:31,9,7,19:31:1209:9,7,19:309,147,114:-0.429901,-6.8133,-103.602,0,-96.5664,-97.3954,-9.40998,-105.987,-99.1714,-103.191 1|1:3:0,0,1,1:0:0:0,1,1:0,33,6:-2.78152,-2.78152,-2.78152,-0.30103,-0.30103,0,-2.81076,-2.81076,-0.297652,-2.50973 0|1:16:8,0,3,2:8:296:0,3,2:0,75,12:-2.6729,-5.08114,-29.405,0,-24.3776,-23.4745,-5.07647,-29.3956,-24.3784,-28.7936 dDocent_Contig_12002 10 . T C 232.239 . AB=0.158416;ABP=105.37;AC=2;AF=0.333333;AN=6;AO=16;CIGAR=1X;DP=110;DPB=110;DPRA=5.61111;EPP=37.7539;EPPR=207.129;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=627;QR=3723;RO=94;RPL=0;RPP=37.7539;RPPR=207.129;RPR=16;RUN=1;SAF=16;SAP=37.7539;SAR=0;SRF=94;SRP=207.129;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:70:60,10:60:2379:10:382:-13.6492,0,-193.188 0/0:9:9,0:9:351:0:0:0,-2.70927,-31.9423 0/1:31:25,6:25:993:6:245:-13.0975,0,-80.3333 dDocent_Contig_12003 8 . T A 459.581 . AB=0.0833333;ABP=111.584;AC=0;AF=0;AN=6;AO=6;CIGAR=4X3M1X2M;DP=108;DPB=108;DPRA=0;EPP=16.0391;EPPR=163.699;GTI=0;LEN=1;MEANALT=2.5;MQM=59.1667;MQMR=60;NS=3;NUMALT=3;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=237;QR=2902;RO=74;RPL=0;RPP=16.0391;RPPR=163.699;RPR=6;RUN=1;SAF=6;SAP=16.0391;SAR=0;SRF=74;SRP=163.699;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|0:36:29,1,0,6:29:1136:1,0,6:40,0,244:-11.4025,-16.8405,-109.941,-20.1323,-110.242,-113.535,0,-90.1128,-93.4058,-91.5997 0|0:20:15,0,2,3:15:590:0,2,3:0,78,120:-5.37538,-9.89083,-58.4228,-3.48978,-52.0181,-51.4161,0,-48.5371,-42.1324,-47.634 0|0:52:30,5,4,13:30:1176:5,4,13:196,159,530:-34.703,-27.628,-122.822,-30.6438,-111.236,-126.14,0,-80.5972,-83.6143,-92.7926 dDocent_Contig_12004 108 . G A 679.976 . AB=0.538462;ABP=3.67845;AC=1;AF=0.166667;AN=6;AO=28;CIGAR=1X;DP=83;DPB=83;DPRA=3.35484;EPP=63.8115;EPPR=122.441;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=943;QR=1896;RO=55;RPL=0;RPP=63.8115;RPPR=122.441;RPR=28;RUN=1;SAF=0;SAP=63.8115;SAR=28;SRF=0;SRP=122.441;SRR=55;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:52:24,28:24:832:28:943:-69.5201,0,-59.5453 0/0:2:2,0:2:69:0:0:0,-0.60206,-6.55266 0/0:29:29,0:29:995:0:0:0,-8.72987,-89.8604 dDocent_Contig_12005 15 . T C 523.196 . AB=0.0833333;ABP=39.2015;AC=2;AF=0.333333;AN=6;AO=2;CIGAR=1X3M;DP=42;DPB=42;DPRA=12;EPP=7.35324;EPPR=48.6112;GTI=0;LEN=1;MEANALT=2;MQM=60;MQMR=60;NS=3;NUMALT=2;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=80;QR=819;RO=21;RPL=0;RPP=7.35324;RPPR=48.6112;RPR=2;RUN=1;SAF=2;SAP=7.35324;SAR=0;SRF=21;SRP=48.6112;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|1:24:8,14,2:8:314:14,2:544,80:-42.2783,0,-21.604,-38.0952,-19.227,-63.319 0|0:2:2,0,0:2:76:0,0:0,0:0,-0.60206,-7.21481,-0.60206,-7.21481,-7.21481 0|1:16:11,5,0:11:429:5,0:200,0:-13.5634,0,-34.1475,-16.8748,-35.6526,-52.1309 dDocent_Contig_12006 45 . C T 92.9023 . AB=0.205882;ABP=28.557;AC=1;AF=0.166667;AN=6;AO=7;CIGAR=1M1D9M1X1M;DP=108;DPB=107.385;DPRA=0.918919;EPP=18.2106;EPPR=215.815;GTI=0;LEN=1;MEANALT=1;MQM=37.2857;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=250;QR=3832;RO=98;RPL=0;RPP=18.2106;RPPR=215.815;RPR=7;RUN=1;SAF=7;SAP=18.2106;SAR=0;SRF=98;SRP=215.815;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|0:64:62,0:62:2419:0:0:0,-18.6639,-217.58 0|0:10:9,0:9:349:0:0:0,-2.70927,-31.38 0|1:34:27,7:27:1064:7:250:-11.1141,0,-85.8246 dDocent_Contig_12009 43 . C T 3593.39 . AB=0.204545;ABP=103.095;AC=1;AF=0.166667;AN=6;AO=27;CIGAR=3M1I3M1X;DP=183;DPB=211.857;DPRA=0;EPP=61.6401;EPPR=39.9253;GTI=0;LEN=1;MEANALT=3.5;MQM=60;MQMR=60;NS=3;NUMALT=3;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=1012;QR=641;RO=17;RPL=0;RPP=61.6401;RPPR=39.9253;RPR=27;RUN=1;SAF=27;SAP=61.6401;SAR=0;SRF=17;SRP=39.9253;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 1|0:121:8,20,25,66:8:301:20,25,66:762,938,2414:-247.005,-186.908,-205.551,-172.58,-134.737,-189.718,-52.1671,-14.3243,0,-56.9619 0|0:11:2,5,2,2:2:79:5,2,2:181,74,72:-14.1692,0,-5.00575,-8.71531,-0.459341,-14.6216,-8.89744,-0.643601,-9.35146,-14.8031 0|0:51:7,11,0,32:7:261:11,0,32:425,0,1132:-103.611,-70.8057,-88.8633,-105.718,-92.1746,-127.085,-13.5495,0,-34.9097,-25.2767 dDocent_Contig_12010 10 . T A 76.7409 . AB=0;ABP=0;AC=2;AF=0.333333;AN=6;AO=2;CIGAR=2X;DP=33;DPB=33;DPRA=0.129032;EPP=7.35324;EPPR=70.3259;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=79;QR=1240;RO=31;RPL=0;RPP=7.35324;RPPR=70.3259;RPR=2;RUN=1;SAF=2;SAP=7.35324;SAR=0;SRF=31;SRP=70.3259;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|0:22:22,0:22:889:0:0:0,-6.62266,-80.3184 1|1:2:0,2:0:0:2:79:-7.49763,-0.60206,0 0|0:9:9,0:9:351:0:0:0,-2.70927,-31.9454 dDocent_Contig_12013 24 . G A 824.273 . AB=0.23125;ABP=103.387;AC=2;AF=0.333333;AN=6;AO=37;CIGAR=1X;DP=173;DPB=173;DPRA=6.15385;EPP=83.3548;EPPR=298.331;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=1483;QR=5357;RO=136;RPL=0;RPP=83.3548;RPPR=298.331;RPR=37;RUN=1;SAF=37;SAP=83.3548;SAR=0;SRF=136;SRP=298.331;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:124:103,21:103:4064:21:845:-39.0338,0,-328.424 0/0:13:13,0:13:502:0:0:0,-3.91339,-45.5254 0/1:36:20,16:20:791:16:638:-46.9163,0,-60.6702 dDocent_Contig_12014 35 . T G 160.972 . AB=0.188679;ABP=47.6279;AC=2;AF=0.333333;AN=6;AO=10;CIGAR=1X;DP=77;DPB=77;DPRA=1.10417;EPP=24.725;EPPR=148.499;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=387;QR=2681;RO=67;RPL=0;RPP=24.725;RPPR=148.499;RPR=10;RUN=1;SAF=10;SAP=24.725;SAR=0;SRF=67;SRP=148.499;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:45:37,8:37:1469:8:308:-14.5305,0,-118.904 0/1:8:6,2:6:240:2:79:-5.08939,0,-19.5672 0/0:24:24,0:24:972:0:0:0,-7.22472,-87.7775 dDocent_Contig_12015 10 . T G 86.6956 . AB=0.113636;ABP=117.111;AC=2;AF=0.333333;AN=6;AO=15;CIGAR=1X;DP=150;DPB=150;DPRA=0;EPP=35.5824;EPPR=296.159;GTI=0;LEN=1;MEANALT=1;MQM=59.3333;MQMR=60;NS=3;NUMALT=1;ODDS=6.93889e-18;PAIRED=0.933333;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=605;QR=5366;RO=135;RPL=0;RPP=35.5824;RPPR=296.159;RPR=15;RUN=1;SAF=15;SAP=35.5824;SAR=0;SRF=135;SRP=296.159;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:62:57,5:57:2263:5:200:0,-0.284319,-185.454 0/1:37:34,3:34:1346:3:122:-0.191393,0,-110.267 0/1:51:44,7:44:1757:7:283:-10.4905,0,-142.997 dDocent_Contig_12017 45 . A G 443.681 . AB=0.263158;ABP=40.0396;AC=3;AF=0.5;AN=6;AO=20;CIGAR=1X;DP=76;DPB=76;DPRA=0;EPP=46.4397;EPPR=113.913;GTI=0;LEN=1;MEANALT=1.33333;MQM=60;MQMR=59.3455;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=0.963636;PAO=0;PQA=0;PQR=0;PRO=0;QA=794;QR=2184;RO=55;RPL=0;RPP=46.4397;RPPR=105.701;RPR=20;RUN=1;SAF=20;SAP=46.4397;SAR=0;SRF=54;SRP=113.913;SRR=1;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:40:27,12:27:1077:12:475:-31.2556,0,-85.3861 0/1:7:5,2:5:184:2:79:-5.39003,0,-14.6395 0/1:29:23,6:23:923:6:240:-13.2453,0,-74.6453 dDocent_Contig_12018 18 . T A 118.014 . AB=0.21875;ABP=24.9965;AC=2;AF=0.333333;AN=6;AO=7;CIGAR=1X;DP=45;DPB=45;DPRA=1.23077;EPP=18.2106;EPPR=85.5263;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=269;QR=1532;RO=38;RPL=0;RPP=18.2106;RPPR=85.5263;RPR=7;RUN=1;SAF=7;SAP=18.2106;SAR=0;SRF=38;SRP=85.5263;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:11:8,3:8:322:3:117:-7.59796,0,-26.037 0/0:13:13,0:13:522:0:0:0,-3.91339,-47.328 0/1:21:17,4:17:688:4:152:-7.72633,0,-55.9279 dDocent_Contig_12019 7 . A T 105.757 . AB=0.12987;ABP=94.6352;AC=1;AF=0.166667;AN=6;AO=10;CIGAR=1X;DP=123;DPB=123;DPRA=3.34783;EPP=24.725;EPPR=246.215;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=388;QR=4214;RO=112;RPL=0;RPP=24.725;RPPR=246.215;RPR=10;RUN=1;SAF=10;SAP=24.725;SAR=0;SRF=112;SRP=246.215;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:77:67,10:67:2510:10:388:-12.0986,0,-202.92 0/0:5:5,0:5:191:0:0:0,-1.50515,-17.5581 0/0:41:40,0:40:1513:0:0:0,-12.0412,-136.338 dDocent_Contig_12020 13 . T A 566.117 . AB=0.153846;ABP=273.609;AC=3;AF=0.5;AN=6;AO=40;CIGAR=1X;DP=260;DPB=260;DPRA=0;EPP=89.8692;EPPR=480.734;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=1549;QR=8346;RO=220;RPL=0;RPP=89.8692;RPPR=480.734;RPR=40;RUN=1;SAF=40;SAP=89.8692;SAR=0;SRF=220;SRP=480.734;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:154:140,14:140:5341:14:568:-5.10374,0,-434.32 0/1:22:15,7:15:567:7:248:-16.0283,0,-44.7464 0/1:84:65,19:65:2438:19:733:-41.0024,0,-194.34 dDocent_Contig_12022 26 . T G 1688.66 . AB=0.666667;ABP=23.2774;AC=3;AF=0.5;AN=6;AO=56;CIGAR=1X;DP=84;DPB=84;DPRA=0;EPP=124.613;EPPR=63.8115;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=2208;QR=1120;RO=28;RPL=0;RPP=124.613;RPPR=63.8115;RPR=56;RUN=1;SAF=56;SAP=124.613;SAR=0;SRF=28;SRP=63.8115;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:38:11,27:11:449:27:1076:-85.6867,0,-29.3267 0/1:12:2,10:2:80:10:384:-31.2977,0,-3.97943 0/1:34:15,19:15:591:19:748:-57.4033,0,-43.2888 dDocent_Contig_12023 57 . C T 3600.89 . AB=0.454545;ABP=3.60252;AC=5;AF=0.833333;AN=6;AO=110;CIGAR=1X;DP=135;DPB=135;DPRA=0;EPP=241.872;EPPR=57.2971;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=4415;QR=958;RO=25;RPL=110;RPP=241.872;RPPR=57.2971;RPR=0;RUN=1;SAF=110;SAP=241.872;SAR=0;SRF=25;SRP=57.2971;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 1/1:80:6,74:6:245:74:2999:-247.554,-1.65293,0 1/1:22:1,21:1:41:21:807:-68.8449,-2.52809,0 0/1:33:18,15:18:672:15:609:-45.2131,0,-50.8542 dDocent_Contig_12024 143 . T G 138.058 . AB=0.333333;ABP=7.35324;AC=2;AF=0.333333;AN=6;AO=7;CIGAR=1X;DP=35;DPB=35;DPRA=0;EPP=18.2106;EPPR=63.8115;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=284;QR=1086;RO=28;RPL=0;RPP=18.2106;RPPR=63.8115;RPR=7;RUN=1;SAF=0;SAP=18.2106;SAR=7;SRF=0;SRP=63.8115;SRR=28;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:17:16,1:16:611:1:40:0,-1.12183,-51.3124 0/1:11:9,2:9:359:2:82:-4.46835,0,-29.3618 0/1:7:3,4:3:116:4:162:-12.8597,0,-8.7083 dDocent_Contig_12025 52 . C T 36.959 . AB=0.136364;ABP=53.5464;AC=2;AF=0.333333;AN=6;AO=6;CIGAR=1X;DP=47;DPB=47;DPRA=7.33333;EPP=16.0391;EPPR=92.0407;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=219;QR=1618;RO=41;RPL=6;RPP=16.0391;RPPR=92.0407;RPR=0;RUN=1;SAF=6;SAP=16.0391;SAR=0;SRF=41;SRP=92.0407;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:34:30,4:30:1176:4:140:-2.70338,0,-95.8831 0/0:3:3,0:3:119:0:0:0,-0.90309,-11.095 0/1:10:8,2:8:323:2:79:-4.48694,0,-26.4289 dDocent_Contig_12026 138 . C G 59.2321 . AB=0;ABP=0;AC=2;AF=0.333333;AN=6;AO=6;CIGAR=1X;DP=40;DPB=40;DPRA=0.352941;EPP=16.0391;EPPR=76.8404;GTI=0;LEN=1;MEANALT=1;MQM=11;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=0;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=176;QR=1241;RO=34;RPL=0;RPP=16.0391;RPPR=76.8404;RPR=6;RUN=1;SAF=0;SAP=16.0391;SAR=6;SRF=0;SRP=76.8404;SRR=34;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:6:6,0:6:230:0:0:0,-1.80618,-21.0667 0/0:28:28,0:28:1011:0:0:0,-8.42884,-91.2968 1/1:6:0,6:0:0:6:176:-5.74707,-1.80618,0 dDocent_Contig_12028 21 . G A 276.96 . AB=0.21519;ABP=58.6715;AC=3;AF=0.5;AN=6;AO=17;CIGAR=1X;DP=79;DPB=79;DPRA=0;EPP=39.9253;EPPR=120.83;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=6.93889e-18;PAIRED=0;PAIREDR=0.967742;PAO=0;PQA=0;PQR=0;PRO=0;QA=619;QR=2409;RO=62;RPL=0;RPP=39.9253;RPPR=137.642;RPR=17;RUN=1;SAF=17;SAP=39.9253;SAR=0;SRF=60;SRP=120.83;SRR=2;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:34:23,11:23:878:11:405:-26.5622,0,-69.086 0/1:18:15,3:15:595:3:107:-4.56354,0,-48.4674 0/1:27:24,3:24:936:3:107:-1.85427,0,-76.4036 dDocent_Contig_12029 17 . C A 84.2299 . AB=0.129032;ABP=77.1206;AC=1;AF=0.166667;AN=6;AO=9;CIGAR=1X;DP=99;DPB=99;DPRA=4;EPP=22.5536;EPPR=198.443;GTI=0;LEN=1;MEANALT=1;MQM=56;MQMR=59.8889;NS=3;NUMALT=1;ODDS=0;PAIRED=0.555556;PAIREDR=0.777778;PAO=0;PQA=0;PQR=0;PRO=0;QA=351;QR=3605;RO=90;RPL=0;RPP=22.5536;RPPR=198.443;RPR=9;RUN=1;SAF=9;SAP=22.5536;SAR=0;SRF=90;SRP=198.443;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:62:54,8:54:2154:8:315:-9.94587,0,-175.358 0/0:11:11,0:11:444:0:0:0,-3.31133,-40.3156 0/0:26:25,1:25:1007:1:36:0,-4.2285,-87.3245 dDocent_Contig_12030 18 . A G 32.0933 . AB=0.117647;ABP=46.1843;AC=1;AF=0.166667;AN=6;AO=4;CIGAR=1X;DP=56;DPB=56;DPRA=3.09091;EPP=11.6962;EPPR=115.927;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=0;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=162;QR=2041;RO=52;RPL=0;RPP=11.6962;RPPR=115.927;RPR=4;RUN=1;SAF=4;SAP=11.6962;SAR=0;SRF=52;SRP=115.927;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:34:30,4:30:1152:4:162:-4.73194,0,-93.7112 0/0:8:8,0:8:326:0:0:0,-2.40824,-29.7097 0/0:14:14,0:14:563:0:0:0,-4.21442,-51.0124 dDocent_Contig_12031 22 . G A 636.653 . AB=0.215827;ABP=100.508;AC=2;AF=0.333333;AN=6;AO=31;CIGAR=1X;DP=162;DPB=162;DPRA=0;EPP=70.3259;EPPR=287.473;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=58.8015;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=0.412214;PAO=0;PQA=0;PQR=0;PRO=0;QA=1244;QR=5187;RO=131;RPL=0;RPP=70.3259;RPPR=287.473;RPR=31;RUN=1;SAF=31;SAP=70.3259;SAR=0;SRF=131;SRP=287.473;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:92:69,23:69:2742:23:928:-56.1284,0,-219.13 0/0:23:22,1:22:860:1:40:0,-2.92801,-73.6375 0/1:47:40,7:40:1585:7:276:-11.0598,0,-127.679 dDocent_Contig_12032 77 . T C 31.5605 . AB=0.1875;ABP=16.582;AC=1;AF=0.166667;AN=6;AO=3;CIGAR=1X;DP=54;DPB=54;DPRA=0.842105;EPP=9.52472;EPPR=113.755;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=105;QR=1755;RO=51;RPL=3;RPP=9.52472;RPPR=113.755;RPR=0;RUN=1;SAF=3;SAP=9.52472;SAR=0;SRF=51;SRP=113.755;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:33:33,0:33:1138:0:0:0,-9.93399,-102.727 0/1:16:13,3:13:449:3:105:-4.97961,0,-35.9236 0/0:5:5,0:5:168:0:0:0,-1.50515,-15.4509 dDocent_Contig_12033 20 . T C 285.097 . AB=0.588235;ABP=4.1599;AC=1;AF=0.166667;AN=6;AO=10;CIGAR=1X;DP=51;DPB=51;DPRA=1;EPP=24.725;EPPR=92.0407;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=390;QR=1633;RO=41;RPL=0;RPP=24.725;RPPR=92.0407;RPR=10;RUN=1;SAF=10;SAP=24.725;SAR=0;SRF=41;SRP=92.0407;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:25:25,0:25:994:0:0:0,-7.52575,-89.7519 0/0:9:9,0:9:356:0:0:0,-2.70927,-32.4014 0/1:17:7,10:7:283:10:390:-30.3336,0,-20.7255 dDocent_Contig_12034 163 . A G 47.2808 . AB=0.230769;ABP=11.1951;AC=1;AF=0.166667;AN=6;AO=3;CIGAR=1X;DP=25;DPB=25;DPRA=2.16667;EPP=9.52472;EPPR=50.7827;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=109;QR=786;RO=22;RPL=3;RPP=9.52472;RPPR=50.7827;RPR=0;RUN=1;SAF=0;SAP=9.52472;SAR=3;SRF=0;SRP=50.7827;SRR=22;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:13:10,3:10:363:3:109:-6.25058,0,-29.096 0/0:2:2,0:2:61:0:0:0,-0.60206,-5.79283 0/0:10:10,0:10:362:0:0:0,-3.0103,-32.916 dDocent_Contig_12035 142 . T G 100.481 . AB=0.4;ABP=3.87889;AC=1;AF=0.25;AN=4;AO=4;CIGAR=1X;DP=26;DPB=26;DPRA=0.625;EPP=11.6962;EPPR=50.7827;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=2;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=163;QR=872;RO=22;RPL=0;RPP=11.6962;RPPR=50.7827;RPR=4;RUN=1;SAF=0;SAP=11.6962;SAR=4;SRF=0;SRP=50.7827;SRR=22;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:16:16,0:16:630:0:0:0,-4.81648,-57.03 ./.:.:.:.:.:.:.:. 0/1:10:6,4:6:242:4:163:-12.0481,0,-19.1466 dDocent_Contig_12036 13 . G T 31.3499 . AB=0.142857;ABP=26.2761;AC=1;AF=0.166667;AN=6;AO=3;CIGAR=1X;DP=41;DPB=41;DPRA=2.1;EPP=9.52472;EPPR=85.5263;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=121;QR=1498;RO=38;RPL=0;RPP=9.52472;RPPR=85.5263;RPR=3;RUN=1;SAF=3;SAP=9.52472;SAR=0;SRF=38;SRP=85.5263;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:13:13,0:13:507:0:0:0,-3.91339,-45.9714 0/0:7:7,0:7:271:0:0:0,-2.10721,-24.7542 0/1:21:18,3:18:720:3:121:-4.95857,0,-58.8051 dDocent_Contig_12038 8 . T C 678.916 . AB=0.407407;ABP=7.03155;AC=4;AF=0.666667;AN=6;AO=25;CIGAR=1X;DP=57;DPB=57;DPRA=0;EPP=57.2971;EPPR=72.4974;GTI=0;LEN=1;MEANALT=1;MQM=57.56;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=0.84;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=963;QR=1245;RO=32;RPL=0;RPP=57.2971;RPPR=72.4974;RPR=25;RUN=1;SAF=25;SAP=57.2971;SAR=0;SRF=32;SRP=72.4974;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:26:12,14:12:468:14:541:-41.1525,0,-34.6458 1/1:3:0,3:0:0:3:110:-10.2558,-0.90309,0 0/1:28:20,8:20:777:8:312:-20.006,0,-61.8293 dDocent_Contig_12039 18 . A G 125.157 . AB=0.190476;ABP=37.9607;AC=2;AF=0.333333;AN=6;AO=8;CIGAR=1M4D1X6M1X;DP=42;DPB=36.7692;DPRA=0;EPP=20.3821;EPPR=57.2971;GTI=0;LEN=1;MEANALT=2;MQM=60;MQMR=60;NS=3;NUMALT=3;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=301;QR=984;RO=25;RPL=0;RPP=20.3821;RPPR=57.2971;RPR=8;RUN=1;SAF=8;SAP=20.3821;SAR=0;SRF=25;SRP=57.2971;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|0:25:14,3,4,4:14:552:3,4,4:116,152,157:-8.70163,-3.38835,-47.9067,-0.456044,-36.3487,-44.6712,0,-35.897,-32.9628,-44.2199 0|1:4:3,0,1,0:3:117:0,1,0:0,40,0:-2.79156,-3.69465,-13.3044,0,-10.0068,-9.70579,-3.69465,-13.3044,-10.0068,-13.3044 0|1:13:8,2,3,0:8:315:2,3,0:78,109,0:-6.47652,-2.46238,-27.7961,0,-19.5058,-25.0137,-8.88476,-28.3982,-25.9168,-34.8107 dDocent_Contig_12040 63 . C T 89.2332 . AB=0.294118;ABP=9.26925;AC=2;AF=0.333333;AN=6;AO=5;CIGAR=1X;DP=31;DPB=31;DPRA=0.607143;EPP=13.8677;EPPR=59.4686;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=1.73472e-18;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=187;QR=991;RO=26;RPL=5;RPP=13.8677;RPPR=59.4686;RPR=0;RUN=1;SAF=5;SAP=13.8677;SAR=0;SRF=26;SRP=59.4686;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:14:14,0:14:530:0:0:0,-4.21442,-48.0418 0/1:8:6,2:6:231:2:73:-4.52306,0,-18.7417 0/1:9:6,3:6:230:3:114:-7.92271,0,-18.3574 dDocent_Contig_12041 49 . G C 153.075 . AB=0.333333;ABP=7.35324;AC=1;AF=0.166667;AN=6;AO=6;CIGAR=1M2I1M2X1M1I5M;DP=66;DPB=67.5;DPRA=0.75;EPP=16.0391;EPPR=124.613;GTI=0;LEN=1;MEANALT=3;MQM=60;MQMR=60;NS=3;NUMALT=2;ODDS=3.46945e-18;PAIRED=0;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=240;QR=2204;RO=56;RPL=6;RPP=16.0391;RPPR=124.613;RPR=0;RUN=1;SAF=6;SAP=16.0391;SAR=0;SRF=56;SRP=124.613;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|0:34:33,0,1:33:1313:0,1:0,40:0,-9.93399,-118.044,-6.23934,-114.748,-114.447 0|1:18:9,6,2:9:349:6,2:240,79:-17.1314,0,-26.9376,-13.331,-22.2367,-41.42 0|0:14:14,0,0:14:542:0,0:0,0:0,-4.21442,-49.1177,-4.21442,-49.1177,-49.1177 dDocent_Contig_12042 22 . A G 379.277 . AB=0.149171;ABP=196.511;AC=3;AF=0.5;AN=6;AO=27;CIGAR=1X;DP=181;DPB=181;DPRA=0;EPP=61.6401;EPPR=337.417;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=1076;QR=6111;RO=154;RPL=0;RPP=61.6401;RPPR=337.417;RPR=27;RUN=1;SAF=27;SAP=61.6401;SAR=0;SRF=154;SRP=337.417;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:105:87,18:87:3438:18:711:-32.7042,0,-277.852 0/1:14:12,2:12:488:2:81:-3.47131,0,-40.0571 0/1:62:55,7:55:2185:7:284:-7.27013,0,-178.152 dDocent_Contig_12043 31 . A G 43.143 . AB=0.135135;ABP=45.7942;AC=2;AF=0.333333;AN=6;AO=5;CIGAR=1X;DP=41;DPB=41;DPRA=4.625;EPP=13.8677;EPPR=81.1833;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=0.972222;PAO=0;PQA=0;PQR=0;PRO=0;QA=202;QR=1426;RO=36;RPL=0;RPP=13.8677;RPPR=81.1833;RPR=5;RUN=1;SAF=5;SAP=13.8677;SAR=0;SRF=36;SRP=81.1833;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:22:19,3:19:754:3:120:-4.56465,0,-61.5596 0/0:4:4,0:4:160:0:0:0,-1.20412,-14.7834 0/1:15:13,2:13:512:2:82:-3.26423,0,-41.9095 dDocent_Contig_12044 11 . A C 1688.42 . AB=0.438462;ABP=7.28643;AC=4;AF=0.666667;AN=6;AO=57;CIGAR=1M1D2M2X;DP=130;DPB=116.167;DPRA=0;EPP=126.784;EPPR=102.898;GTI=0;LEN=1;MEANALT=2.66667;MQM=60;MQMR=60;NS=3;NUMALT=2;ODDS=2.77556e-17;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=2246;QR=1793;RO=46;RPL=0;RPP=126.784;RPPR=102.898;RPR=57;RUN=1;SAF=57;SAP=126.784;SAR=0;SRF=46;SRP=102.898;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|1:87:33,17,35:33:1282:17,35:661,1377:-103.341,-58.9557,-159.177,0,-51.0198,-94.8049 0|1:9:7,0,2:7:275:0,2:0,80:-4.88252,-6.98973,-29.6038,0,-23.012,-22.41 1|1:34:6,7,20:6:236:7,20:273,789:-66.1405,-45.5067,-62.8127,-3.02463,0,-16.4184 dDocent_Contig_12046 22 . G T 1508.43 . AB=0.45;ABP=5.61607;AC=3;AF=0.5;AN=6;AO=54;CIGAR=1X;DP=120;DPB=120;DPRA=0;EPP=120.27;EPPR=146.327;GTI=0;LEN=1;MEANALT=1;MQM=59.2222;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=0.944444;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=2148;QR=2522;RO=66;RPL=0;RPP=120.27;RPPR=146.327;RPR=54;RUN=1;SAF=54;SAP=120.27;SAR=0;SRF=66;SRP=146.327;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:54:32,22:32:1231:22:882:-63.4345,0,-94.804 0/1:27:13,14:13:469:14:559:-42.5253,0,-34.4085 0/1:39:21,18:21:822:18:707:-50.4058,0,-62.5599 dDocent_Contig_12047 80 . T A 995.656 . AB=0.142857;ABP=41.7866;AC=0;AF=0;AN=6;AO=5;CIGAR=8M1X13M;DP=85;DPB=81.9091;DPRA=0;EPP=13.8677;EPPR=63.8115;GTI=0;LEN=1;MEANALT=5;MQM=60;MQMR=60;NS=3;NUMALT=3;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=169;QR=940;RO=28;RPL=5;RPP=13.8677;RPPR=63.8115;RPR=0;RUN=1;SAF=5;SAP=13.8677;SAR=0;SRF=28;SRP=63.8115;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|0:50:16,28,4,0:16:539:28,4,0:969,145,0:-73.9566,0,-35.2699,-66.9314,-31.8526,-109.405,-78.7731,-43.6987,-110.609,-122.45 0|0:11:4,0,3,1:4:140:0,3,1:0,105,31:-7.43476,-8.63888,-20.0766,0,-11.5034,-10.6003,-6.13563,-17.5839,-9.00454,-17.2829 0|0:24:8,9,1,4:8:261:9,1,4:320,36,138:-23.6971,0,-18.3775,-23.1662,-18.1462,-43.9389,-14.8902,-9.86503,-33.0254,-34.7603 dDocent_Contig_12048 24 . T C 864.141 . AB=0.133333;ABP=20.5268;AC=0;AF=0;AN=6;AO=2;CIGAR=1X2M1X;DP=56;DPB=56;DPRA=0;EPP=7.35324;EPPR=55.1256;GTI=0;LEN=1;MEANALT=2;MQM=60;MQMR=60;NS=3;NUMALT=2;ODDS=0;PAIRED=0;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=75;QR=936;RO=24;RPL=0;RPP=7.35324;RPPR=55.1256;RPR=2;RUN=1;SAF=2;SAP=7.35324;SAR=0;SRF=24;SRP=55.1256;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|0:15:6,2,7:6:240:2,7:75,280:-21.2768,-16.9452,-36.1136,0,-13.652,-17.6819 0|0:37:17,0,20:17:657:0,20:0,792:-60.4634,-65.5809,-119.532,0,-54.3411,-48.3205 0|0:4:1,0,3:1:39:0,3:0,122:-10.1684,-10.4694,-13.6712,0,-3.59553,-2.69244 dDocent_Contig_12051 48 . T A 712.286 . AB=0.55814;ABP=4.27278;AC=2;AF=0.333333;AN=6;AO=24;CIGAR=1X;DP=57;DPB=57;DPRA=1.53571;EPP=55.1256;EPPR=74.6689;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=966;QR=1317;RO=33;RPL=0;RPP=55.1256;RPPR=74.6689;RPR=24;RUN=1;SAF=24;SAP=55.1256;SAR=0;SRF=33;SRP=74.6689;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:37:18,19:18:719:19:773:-58.7513,0,-53.8973 0/0:14:14,0:14:557:0:0:0,-4.21442,-50.4713 0/1:6:1,5:1:41:5:193:-15.9314,0,-2.28839 dDocent_Contig_12052 92 . C A 407.658 . AB=0.566667;ABP=4.16842;AC=2;AF=0.5;AN=4;AO=17;CIGAR=1X;DP=30;DPB=30;DPRA=0;EPP=39.9253;EPPR=31.2394;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=2;NUMALT=1;ODDS=0;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=587;QR=451;RO=13;RPL=17;RPP=39.9253;RPPR=31.2394;RPR=0;RUN=1;SAF=17;SAP=39.9253;SAR=0;SRF=0;SRP=31.2394;SRR=13;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:20:8,12:8:267:12:419:-32.0239,0,-18.3293 ./.:.:.:.:.:.:.:. 0/1:10:5,5:5:184:5:168:-12.4409,0,-13.9081 dDocent_Contig_12054 8 . T G 51.1975 . AB=0.126984;ABP=79.1497;AC=2;AF=0.333333;AN=6;AO=8;CIGAR=1X;DP=104;DPB=104;DPRA=0.768293;EPP=20.3821;EPPR=211.472;GTI=0;LEN=1;MEANALT=1;MQM=55.625;MQMR=53.6562;NS=3;NUMALT=1;ODDS=0;PAIRED=0.125;PAIREDR=0.229167;PAO=0;PQA=0;PQR=0;PRO=0;QA=295;QR=3704;RO=96;RPL=0;RPP=20.3821;RPPR=211.472;RPR=8;RUN=1;SAF=8;SAP=20.3821;SAR=0;SRF=96;SRP=211.472;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:41:41,0:41:1568:0:0:0,-12.3422,-137.535 0/1:12:9,3:9:344:3:113:-6.91151,0,-27.6507 0/1:51:46,5:46:1792:5:182:-1.36262,0,-142.922 dDocent_Contig_12055 125 . A T 32.7776 . AB=0.25;ABP=7.35324;AC=1;AF=0.25;AN=4;AO=2;CIGAR=1X;DP=14;DPB=14;DPRA=1.33333;EPP=7.35324;EPPR=29.068;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=2;NUMALT=1;ODDS=0;PAIRED=0;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=81;QR=391;RO=12;RPL=0;RPP=7.35324;RPPR=29.068;RPR=2;RUN=1;SAF=2;SAP=7.35324;SAR=0;SRF=0;SRP=29.068;SRR=12;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL ./.:.:.:.:.:.:.:. 0/0:6:6,0:6:186:0:0:0,-1.80618,-17.0459 0/1:8:6,2:6:205:2:81:-5.27749,0,-16.377 dDocent_Contig_12057 3 . A T 239.039 . AB=0;ABP=0;AC=4;AF=1;AN=4;AO=8;CIGAR=2I1X1M1X;DP=8;DPB=13.3333;DPRA=0;EPP=20.3821;EPPR=0;GTI=0;LEN=1;MEANALT=1;MQM=47.625;MQMR=0;NS=2;NUMALT=1;ODDS=0;PAIRED=0.25;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=267;QR=0;RO=0;RPL=0;RPP=20.3821;RPPR=0;RPR=8;RUN=1;SAF=8;SAP=20.3821;SAR=0;SRF=0;SRP=0;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL .:.:.:.:.:.:.:. 1|1:3:0,3:0:0:3:103:-8.72292,-0.90309,0 1|1:5:0,5:0:0:5:164:-14.8796,-1.50515,0 dDocent_Contig_12058 10 . G T 132.688 . AB=0.166667;ABP=49.335;AC=1;AF=0.166667;AN=6;AO=8;CIGAR=1X1M1X2M1D9M;DP=104;DPB=103.467;DPRA=1.71429;EPP=20.3821;EPPR=207.129;GTI=0;LEN=1;MEANALT=2;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=3.46945e-18;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=322;QR=3643;RO=94;RPL=0;RPP=20.3821;RPPR=207.129;RPR=8;RUN=1;SAF=8;SAP=20.3821;SAR=0;SRF=94;SRP=207.129;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|1:48:39,8:39:1509:8:322:-14.7917,0,-121.521 0|0:20:20,0:20:767:0:0:0,-6.0206,-69.3561 0|0:36:35,0:35:1367:0:0:0,-10.536,-123.112 dDocent_Contig_12059 19 . A T 62.2573 . AB=0.146341;ABP=47.552;AC=3;AF=0.5;AN=6;AO=6;CIGAR=1X;DP=41;DPB=41;DPRA=0;EPP=16.0391;EPPR=79.0118;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=246;QR=1409;RO=35;RPL=0;RPP=16.0391;RPPR=79.0118;RPR=6;RUN=1;SAF=6;SAP=16.0391;SAR=0;SRF=35;SRP=79.0118;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:19:17,2:17:682:2:82:-2.06011,0,-55.9897 0/1:9:8,1:8:317:1:41:-1.3853,0,-26.1866 0/1:13:10,3:10:410:3:123:-7.5514,0,-33.3472 dDocent_Contig_12060 173 . G A 79.5792 . AB=0.333333;ABP=5.9056;AC=2;AF=0.333333;AN=6;AO=4;CIGAR=1X;DP=17;DPB=17;DPRA=1.2;EPP=11.6962;EPPR=31.2394;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=160;QR=514;RO=13;RPL=4;RPP=11.6962;RPPR=31.2394;RPR=0;RUN=1;SAF=0;SAP=11.6962;SAR=4;SRF=0;SRP=31.2394;SRR=13;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:7:6,1:6:241:1:40:-1.88847,0,-19.9586 0/0:5:5,0:5:192:0:0:0,-1.50515,-17.6454 0/1:5:2,3:2:81:3:120:-9.68216,0,-6.18058 dDocent_Contig_12062 14 . C G 2591.31 . AB=0.605634;ABP=16.7732;AC=3;AF=0.5;AN=6;AO=86;CIGAR=1X;DP=142;DPB=142;DPRA=0;EPP=189.757;EPPR=124.613;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=3403;QR=2211;RO=56;RPL=0;RPP=189.757;RPPR=124.613;RPR=86;RUN=1;SAF=86;SAP=189.757;SAR=0;SRF=56;SRP=124.613;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:98:35,63:35:1392:63:2490:-194.735,0,-96.0352 0/1:7:1,6:1:39:6:242:-20.0503,0,-1.78935 0/1:37:20,17:20:780:17:671:-49.5767,0,-59.3734 dDocent_Contig_12063 140 . A T 237.752 . AB=0.428571;ABP=3.94093;AC=2;AF=0.333333;AN=6;AO=9;CIGAR=1X;DP=29;DPB=29;DPRA=1.3125;EPP=22.5536;EPPR=46.4397;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=365;QR=774;RO=20;RPL=0;RPP=22.5536;RPPR=46.4397;RPR=9;RUN=1;SAF=0;SAP=22.5536;SAR=9;SRF=0;SRP=46.4397;SRR=20;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:8:8,0:8:306:0:0:0,-2.40824,-27.8958 0/1:6:4,2:4:158:2:81:-5.87955,0,-12.7941 0/1:15:8,7:8:310:7:284:-21.4185,0,-23.7458 dDocent_Contig_12065 114 . A G 108.98 . AB=0.225806;ABP=23.254;AC=1;AF=0.166667;AN=6;AO=7;CIGAR=1X;DP=62;DPB=62;DPRA=2;EPP=18.2106;EPPR=122.441;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=238;QR=1900;RO=55;RPL=0;RPP=18.2106;RPPR=122.441;RPR=7;RUN=1;SAF=0;SAP=18.2106;SAR=7;SRF=0;SRP=122.441;SRR=55;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:31:24,7:24:832:7:238:-12.4208,0,-65.8669 0/0:5:5,0:5:172:0:0:0,-1.50515,-15.8183 0/0:26:26,0:26:896:0:0:0,-7.82678,-80.9552 dDocent_Contig_12066 74 . T G 231.527 . AB=0.289474;ABP=17.6392;AC=4;AF=0.666667;AN=6;AO=12;CIGAR=1X;DP=39;DPB=39;DPRA=0;EPP=29.068;EPPR=61.6401;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=412;QR=972;RO=27;RPL=12;RPP=29.068;RPPR=61.6401;RPR=0;RUN=1;SAF=12;SAP=29.068;SAR=0;SRF=27;SRP=61.6401;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:22:17,5:17:618:5:166:-8.64276,0,-49.331 1/1:1:0,1:0:0:1:37:-3.69783,-0.30103,0 0/1:16:10,6:10:354:6:209:-14.3342,0,-27.3836 dDocent_Contig_12067 8 . T A 1206.53 . AB=0.414414;ABP=10.0725;AC=3;AF=0.5;AN=6;AO=46;CIGAR=1X;DP=111;DPB=111;DPRA=0;EPP=102.898;EPPR=144.156;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=1762;QR=2514;RO=65;RPL=0;RPP=102.898;RPPR=144.156;RPR=46;RUN=1;SAF=46;SAP=102.898;SAR=0;SRF=65;SRP=144.156;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:60:27,33:27:1039:33:1272:-96.709,0,-75.7544 0/1:9:4,5:4:156:5:187:-14.4832,0,-11.708 0/1:42:34,8:34:1319:8:303:-14.9841,0,-106.353 dDocent_Contig_12069 23 . T G 827.884 . AB=0.186047;ABP=76.6384;AC=3;AF=0.5;AN=6;AO=16;CIGAR=1X4M;DP=104;DPB=104;DPRA=0;EPP=37.7539;EPPR=109.412;GTI=0;LEN=1;MEANALT=3;MQM=60;MQMR=60;NS=3;NUMALT=3;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=598;QR=1915;RO=49;RPL=0;RPP=37.7539;RPPR=109.412;RPR=16;RUN=1;SAF=16;SAP=37.7539;SAR=0;SRF=49;SRP=109.412;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|1:72:35,4,20,13:35:1370:4,20,13:156,760,485:-51.776,-49.4875,-160.934,0,-99.8294,-106.632,-22.6104,-122.436,-72.9527,-131.346 0|1:14:3,2,6,3:3:119:2,6,3:77,216,113:-16.7053,-11.2827,-20.4845,0,-3.48057,-7.99607,-8.34658,-11.8265,-0.549027,-17.2478 0|1:18:11,0,7,0:11:426:0,7,0:0,276,0:-19.7909,-23.1022,-58.0909,0,-35.3799,-33.2727,-23.1022,-58.0909,-35.3799,-58.0909 dDocent_Contig_12070 10 . G A 140.902 . AB=0.454545;ABP=3.20771;AC=1;AF=0.166667;AN=6;AO=6;CIGAR=1X1M;DP=45;DPB=45;DPRA=1.75;EPP=16.0391;EPPR=74.6689;GTI=0;LEN=1;MEANALT=2;MQM=59;MQMR=59.8788;NS=3;NUMALT=2;ODDS=3.46945e-18;PAIRED=0;PAIREDR=0.909091;PAO=0;PQA=0;PQR=0;PRO=0;QA=244;QR=1308;RO=33;RPL=0;RPP=16.0391;RPPR=74.6689;RPR=6;RUN=1;SAF=6;SAP=16.0391;SAR=0;SRF=33;SRP=74.6689;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|0:24:20,3,1:20:795:3,1:109,41:0,-0.00804575,-64.5469,-2.59922,-62.0654,-67.8709 0|0:10:10,0,0:10:393:0,0:0,0:0,-3.0103,-35.7206,-3.0103,-35.7206,-35.7206 0|1:11:3,3,5:3:120:3,5:113,203:-15.9126,-10.623,-19.6028,0,-3.77445,-8.44729 dDocent_Contig_12071 25 . G A 681.524 . AB=0.251748;ABP=79.5585;AC=2;AF=0.333333;AN=6;AO=47;CIGAR=1X;DP=289;DPB=289;DPRA=0;EPP=47.41;EPPR=345.101;GTI=0;LEN=1;MEANALT=1.66667;MQM=51.2979;MQMR=59.906;NS=3;NUMALT=1;ODDS=0;PAIRED=0.382979;PAIREDR=0.769231;PAO=0;PQA=0;PQR=0;PRO=0;QA=1678;QR=9093;RO=234;RPL=0;RPP=105.07;RPPR=412.249;RPR=47;RUN=1;SAF=39;SAP=47.41;SAR=8;SRF=213;SRP=345.101;SRR=21;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:146:130,11:130:5092:11:396:0,-7.41844,-422.707 0/1:74:55,19:55:2039:19:640:-34.5113,0,-161.424 0/1:69:49,17:49:1962:17:642:-37.1639,0,-156.498 dDocent_Contig_12072 35 . C T 109.168 . AB=0.25;ABP=7.35324;AC=1;AF=0.166667;AN=6;AO=2;CIGAR=10M1X3M;DP=44;DPB=39.7143;DPRA=0.4;EPP=7.35324;EPPR=83.3548;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=2;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=81;QR=1422;RO=37;RPL=0;RPP=7.35324;RPPR=83.3548;RPR=2;RUN=1;SAF=2;SAP=7.35324;SAR=0;SRF=37;SRP=83.3548;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|0:20:20,0,0:20:759:0,0:0,0:0,-6.0206,-68.6326,-6.0206,-68.6326,-68.6326 0|1:8:6,0,2:6:235:0,2:0,81:-5.27749,-7.08367,-26.3981,0,-19.7156,-19.1136 0|0:16:11,5,0:11:428:5,0:152,0:-9.16215,0,-34.058,-12.4735,-35.5631,-47.7062 dDocent_Contig_12073 15 . C A 471.731 . AB=0.2625;ABP=42.2054;AC=2;AF=0.333333;AN=6;AO=23;CIGAR=1X;DP=112;DPB=112;DPRA=0;EPP=52.9542;EPPR=194.1;GTI=0;LEN=1;MEANALT=1.33333;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=905;QR=3500;RO=88;RPL=0;RPP=52.9542;RPPR=194.1;RPR=23;RUN=1;SAF=23;SAP=52.9542;SAR=0;SRF=88;SRP=194.1;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:61:45,15:45:1782:15:599:-35.8055,0,-142.153 0/0:32:30,2:30:1196:2:81:0,-1.94723,-100.229 0/1:19:13,6:13:522:6:225:-14.8904,0,-41.6071 dDocent_Contig_12075 28 . T A 38.4937 . AB=0.285714;ABP=5.80219;AC=1;AF=0.166667;AN=6;AO=3;CIGAR=1X;DP=33;DPB=33;DPRA=16;EPP=9.52472;EPPR=68.1545;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=123;QR=1178;RO=30;RPL=0;RPP=9.52472;RPPR=68.1545;RPR=3;RUN=1;SAF=3;SAP=9.52472;SAR=0;SRF=30;SRP=68.1545;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:25:24,1:24:945:1:41:0,-3.43118,-81.2611 0/0:1:1,0:1:38:0:0:0,-0.30103,-3.79727 0/1:7:5,2:5:195:2:82:-5.67247,0,-15.8157 dDocent_Contig_12076 56 . T A 214.691 . AB=0.233333;ABP=21.5402;AC=2;AF=0.333333;AN=6;AO=7;CIGAR=1M4I3M1X4M;DP=50;DPB=49.1111;DPRA=0.75;EPP=18.2106;EPPR=68.1545;GTI=0;LEN=1;MEANALT=2.5;MQM=60;MQMR=60;NS=3;NUMALT=3;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=277;QR=1155;RO=30;RPL=7;RPP=18.2106;RPPR=68.1545;RPR=0;RUN=1;SAF=7;SAP=18.2106;SAR=0;SRF=30;SRP=68.1545;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|1:18:11,4,3,0:11:433:4,3,0:158,115,0:-9.69721,0,-34.4249,-3.57473,-26.1925,-38.2917,-13.0085,-35.629,-39.1947,-48.6318 1|0:12:2,3,4,3:2:80:3,4,3:119,154,114:-15.2467,-6.04861,-11.7395,-3.20621,0,-8.59515,-6.50234,-3.29645,-0.456559,-12.1916 0|0:20:17,0,1,0:17:642:0,1,0:0,38,0:0,-5.11751,-57.8103,-1.956,-54.693,-54.392,-5.11751,-57.8103,-54.693,-57.8103 dDocent_Contig_12077 148 . C T 210.872 . AB=0.347826;ABP=7.63648;AC=1;AF=0.25;AN=4;AO=8;CIGAR=1X;DP=31;DPB=31;DPRA=2.875;EPP=20.3821;EPPR=52.9542;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=2;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=326;QR=812;RO=23;RPL=0;RPP=20.3821;RPPR=52.9542;RPR=8;RUN=1;SAF=0;SAP=20.3821;SAR=8;SRF=0;SRP=52.9542;SRR=23;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:23:15,8:15:517:8:326:-22.7862,0,-39.9263 ./.:.:.:.:.:.:.:. 0/0:8:8,0:8:295:0:0:0,-2.40824,-26.9033 dDocent_Contig_12078 28 . C T 191.386 . AB=0.466667;ABP=3.15506;AC=1;AF=0.166667;AN=6;AO=7;CIGAR=1X;DP=54;DPB=54;DPRA=0.769231;EPP=18.2106;EPPR=105.07;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=8.67362e-19;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=279;QR=1844;RO=47;RPL=0;RPP=18.2106;RPPR=105.07;RPR=7;RUN=1;SAF=7;SAP=18.2106;SAR=0;SRF=47;SRP=105.07;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:28:28,0:28:1112:0:0:0,-8.42884,-100.36 0/1:15:8,7:8:289:7:279:-20.9625,0,-21.833 0/0:11:11,0:11:443:0:0:0,-3.31133,-40.2251 dDocent_Contig_12079 10 . G A 206.574 . AB=0.166667;ABP=8.80089;AC=3;AF=0.5;AN=6;AO=7;CIGAR=1X2M1X;DP=20;DPB=20;DPRA=0.75;EPP=18.2106;EPPR=31.2394;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=257;QR=490;RO=13;RPL=0;RPP=18.2106;RPPR=31.2394;RPR=7;RUN=1;SAF=7;SAP=18.2106;SAR=0;SRF=13;SRP=31.2394;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|0:8:8,0:8:299:0:0:0,-2.40824,-27.2628 0|1:6:5,1:5:191:1:34:-1.59273,0,-15.7521 1|1:6:0,6:0:0:6:223:-20.428,-1.80618,0 dDocent_Contig_12080 7 . A C 433.258 . AB=0.472222;ABP=3.25157;AC=3;AF=0.5;AN=6;AO=17;CIGAR=1X;DP=36;DPB=36;DPRA=0;EPP=39.9253;EPPR=44.2683;GTI=0;LEN=1;MEANALT=1;MQM=59.2941;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=651;QR=713;RO=19;RPL=0;RPP=39.9253;RPPR=44.2683;RPR=17;RUN=1;SAF=17;SAP=39.9253;SAR=0;SRF=19;SRP=44.2683;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:15:7,8:7:266:8:312:-23.9295,0,-19.7863 0/1:11:4,7:4:145:7:261:-20.5254,0,-10.0924 0/1:10:8,2:8:302:2:78:-4.39317,0,-24.5266 dDocent_Contig_12081 7 . A G 42.7211 . AB=0.138889;ABP=43.7857;AC=1;AF=0.166667;AN=6;AO=5;CIGAR=1X2M1X;DP=89;DPB=89;DPRA=1.35849;EPP=13.8677;EPPR=181.071;GTI=0;LEN=1;MEANALT=2;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=182;QR=3127;RO=82;RPL=0;RPP=13.8677;RPPR=181.071;RPR=5;RUN=1;SAF=5;SAP=13.8677;SAR=0;SRF=82;SRP=181.071;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|1:36:30,5:30:1148:5:182:-5.79496,0,-92.6752 0|0:17:17,0:17:649:0:0:0,-5.11751,-58.7462 0|0:36:35,0:35:1330:0:0:0,-10.536,-119.87 dDocent_Contig_12083 87 . T G 32.2433 . AB=0.153846;ABP=30.0702;AC=1;AF=0.166667;AN=6;AO=4;CIGAR=2M1X3M;DP=90;DPB=89.3333;DPRA=0.8125;EPP=11.6962;EPPR=181.071;GTI=0;LEN=1;MEANALT=2;MQM=60;MQMR=60;NS=3;NUMALT=2;ODDS=3.46945e-18;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=136;QR=2754;RO=82;RPL=4;RPP=11.6962;RPPR=181.071;RPR=0;RUN=1;SAF=4;SAP=11.6962;SAR=0;SRF=82;SRP=181.071;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|0:44:42,2,0:42:1416:2,0:64,0:0,-7.16663,-121.658,-12.6433,-122.26,-127.416 0|0:20:20,0,0:20:669:0,0:0,0:0,-6.0206,-60.5261,-6.0206,-60.5261,-60.5261 0|1:26:20,2,4:20:669:2,4:57,136:-5.04798,-6.55969,-60.1239,0,-49.693,-53.0116 dDocent_Contig_12084 22 . C T 1065.61 . AB=0.386139;ABP=14.3837;AC=2;AF=0.333333;AN=6;AO=39;CIGAR=1X;DP=130;DPB=130;DPRA=1.74138;EPP=87.6977;EPPR=200.614;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=1554;QR=3654;RO=91;RPL=0;RPP=87.6977;RPPR=200.614;RPR=39;RUN=1;SAF=39;SAP=87.6977;SAR=0;SRF=91;SRP=200.614;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:83:53,30:53:2125:30:1203:-83.5568,0,-166.437 0/1:18:9,9:9:358:9:351:-26.527,0,-27.161 0/0:29:29,0:29:1171:0:0:0,-8.72987,-105.665 dDocent_Contig_12085 26 . G T 384.442 . AB=0.571429;ABP=3.94093;AC=3;AF=0.5;AN=6;AO=12;CIGAR=1X2M;DP=27;DPB=27;DPRA=1.75;EPP=29.068;EPPR=29.068;GTI=0;LEN=1;MEANALT=1.5;MQM=60;MQMR=60;NS=3;NUMALT=2;ODDS=1.73472e-18;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=450;QR=468;RO=12;RPL=0;RPP=29.068;RPPR=29.068;RPR=12;RUN=1;SAF=12;SAP=29.068;SAR=0;SRF=12;SRP=29.068;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 1|1:14:1,3,10:1:35:3,10:114,370:-36.4826,-27.4323,-29.3751,-6.53112,0,-6.36109 0|0:6:6,0,0:6:234:0,0:0,0:0,-1.80618,-21.4305,-1.80618,-21.4305,-21.4305 0|1:7:5,0,2:5:199:0,2:0,80:-5.48436,-6.98951,-23.3741,0,-16.7836,-16.1815 dDocent_Contig_12086 24 . G T 60.1509 . AB=0.135135;ABP=45.7942;AC=1;AF=0.166667;AN=6;AO=5;CIGAR=1X1M1X3M;DP=65;DPB=65;DPRA=2.64286;EPP=13.8677;EPPR=128.956;GTI=0;LEN=1;MEANALT=2;MQM=60;MQMR=60;NS=3;NUMALT=2;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=201;QR=2288;RO=58;RPL=0;RPP=13.8677;RPPR=128.956;RPR=5;RUN=1;SAF=5;SAP=13.8677;SAR=0;SRF=58;SRP=128.956;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|1:37:30,5,2:30:1186:5,2:201,79:-7.53788,0,-96.0914,-10.0698,-91.0956,-107.058 0|0:5:5,0,0:5:199:0,0:0,0:0,-1.50515,-18.2889,-1.50515,-18.2889,-18.2889 0|0:23:23,0,0:23:903:0,0:0,0:0,-6.92369,-81.573,-6.92369,-81.573,-81.573 dDocent_Contig_12087 10 . G A 130.163 . AB=0.3;ABP=9.95901;AC=2;AF=0.333333;AN=6;AO=7;CIGAR=1X;DP=43;DPB=43;DPRA=0;EPP=18.2106;EPPR=81.1833;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=282;QR=1427;RO=36;RPL=0;RPP=18.2106;RPPR=81.1833;RPR=7;RUN=1;SAF=7;SAP=18.2106;SAR=0;SRF=36;SRP=81.1833;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:23:22,1:22:863:1:40:0,-2.92801,-73.9786 0/1:6:3,3:3:119:3:123:-9.65861,0,-9.28832 0/1:14:11,3:11:445:3:119:-6.88059,0,-36.1913 dDocent_Contig_12089 9 . T C 417.178 . AB=0.340426;ABP=13.4056;AC=2;AF=0.333333;AN=6;AO=16;CIGAR=1X1M1X;DP=47;DPB=47;DPRA=0;EPP=37.7539;EPPR=50.7827;GTI=0;LEN=1;MEANALT=2.66667;MQM=60;MQMR=60;NS=3;NUMALT=3;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=611;QR=850;RO=22;RPL=0;RPP=37.7539;RPPR=50.7827;RPR=16;RUN=1;SAF=16;SAP=37.7539;SAR=0;SRF=22;SRP=50.7827;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|1:23:8,12,3,0:8:306:12,3,0:464,123,0:-35.6858,0,-21.4761,-27.9372,-14.9288,-52.1408,-38.0941,-25.0885,-53.0438,-63.1993 0|0:14:9,1,0,2:9:345:1,0,2:37,0,82:-4.08941,-3.77014,-31.7982,-6.79868,-32.0992,-35.1257,0,-25.325,-28.352,-27.7499 0|1:10:5,3,0,2:5:199:3,0,2:110,0,81:-7.46347,0,-15.4782,-8.96862,-16.3813,-25.3628,-2.27424,-9.70011,-18.6799,-18.0778 dDocent_Contig_12090 70 . A G 32.7068 . AB=0.2;ABP=14.7363;AC=1;AF=0.166667;AN=6;AO=3;CIGAR=1X;DP=56;DPB=56;DPRA=0.731707;EPP=9.52472;EPPR=118.098;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=8.67362e-19;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=103;QR=1923;RO=53;RPL=3;RPP=9.52472;RPPR=118.098;RPR=0;RUN=1;SAF=3;SAP=9.52472;SAR=0;SRF=53;SRP=118.098;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:33:33,0:33:1235:0:0:0,-9.93399,-111.445 0/0:8:8,0:8:268:0:0:0,-2.40824,-24.4389 0/1:15:12,3:12:420:3:103:-5.09435,0,-33.6167 dDocent_Contig_12091 107 . N T 53.0656 . AB=0;ABP=0;AC=4;AF=1;AN=4;AO=2;CIGAR=1X3M1X;DP=3;DPB=3;DPRA=2;EPP=7.35324;EPPR=0;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=0;NS=2;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=54;QR=0;RO=0;RPL=0;RPP=7.35324;RPPR=0;RPR=2;RUN=1;SAF=0;SAP=7.35324;SAR=2;SRF=0;SRP=0;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 1|1:1:0,0:0:0:0:0:0,0,0 .:.:.:.:.:.:.:. 1|1:2:0,2:0:0:2:54:-5.12867,-0.60206,0 dDocent_Contig_12093 7 . A G 129.823 . AB=0.243902;ABP=26.3669;AC=2;AF=0.333333;AN=6;AO=10;CIGAR=1X;DP=52;DPB=52;DPRA=1.86364;EPP=24.725;EPPR=94.2121;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=297;QR=1606;RO=42;RPL=0;RPP=24.725;RPPR=94.2121;RPR=10;RUN=1;SAF=10;SAP=24.725;SAR=0;SRF=42;SRP=94.2121;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:32:23,9:23:886:9:265:-14.5007,0,-70.4263 0/0:11:11,0:11:422:0:0:0,-3.31133,-38.3331 0/1:9:8,1:8:298:1:32:-0.490043,0,-24.4649 dDocent_Contig_12094 15 . C G 85.3556 . AB=0.266667;ABP=10.1038;AC=1;AF=0.166667;AN=6;AO=4;CIGAR=1X;DP=48;DPB=48;DPRA=0.909091;EPP=11.6962;EPPR=98.5551;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=161;QR=1749;RO=44;RPL=0;RPP=11.6962;RPPR=98.5551;RPR=4;RUN=1;SAF=4;SAP=11.6962;SAR=0;SRF=44;SRP=98.5551;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:27:27,0:27:1070:0:0:0,-8.12781,-96.5856 0/1:15:11,4:11:438:4:161:-10.3594,0,-35.2582 0/0:6:6,0:6:241:0:0:0,-1.80618,-22.0667 dDocent_Contig_12095 16 . G T 84.9362 . AB=0.166667;ABP=37.7539;AC=2;AF=0.333333;AN=6;AO=6;CIGAR=1X;DP=50;DPB=50;DPRA=1.28571;EPP=16.0391;EPPR=96.3836;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=245;QR=1715;RO=43;RPL=0;RPP=16.0391;RPPR=96.3836;RPR=6;RUN=1;SAF=6;SAP=16.0391;SAR=0;SRF=43;SRP=96.3836;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:20:16,4:16:637:4:163:-9.03783,0,-51.6416 0/0:14:13,0:13:515:0:0:0,-3.91339,-46.2876 0/1:16:14,2:14:563:2:82:-2.9632,0,-46.1973 dDocent_Contig_12096 7 . A G 1572.85 . AB=0.475;ABP=3.66174;AC=2;AF=0.333333;AN=6;AO=57;CIGAR=1X1M1X;DP=120;DPB=120;DPRA=0;EPP=126.784;EPPR=94.2121;GTI=0;LEN=1;MEANALT=2;MQM=41.3509;MQMR=60;NS=3;NUMALT=2;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=1899;QR=1606;RO=42;RPL=0;RPP=126.784;RPPR=94.2121;RPR=57;RUN=1;SAF=57;SAP=126.784;SAR=0;SRF=42;SRP=94.2121;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|0:50:31,6,13:31:1191:6,13:189,491:-30.9607,-26.2343,-122.205,0,-83.7776,-93.9343 1|0:32:0,29,3:0:0:29,3:983,117:-79.6655,-10.0073,-1.27742,-70.0395,0,-69.1365 0|1:38:11,22,5:11:415:22,5:727,192:-51.4325,0,-27.3844,-38.9691,-18.2438,-71.4979 dDocent_Contig_12097 114 . T C 78.3395 . AB=0.4;ABP=3.87889;AC=1;AF=0.166667;AN=6;AO=5;CIGAR=2X;DP=103;DPB=103;DPRA=0.330645;EPP=13.8677;EPPR=215.815;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=172;QR=3356;RO=98;RPL=0;RPP=13.8677;RPPR=215.815;RPR=5;RUN=1;SAF=0;SAP=13.8677;SAR=5;SRF=0;SRP=215.815;SRR=98;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|0:62:62,0:62:2114:0:0:0,-18.6639,-190.535 0|1:10:6,4:6:207:4:137:-9.65786,0,-15.9579 0|0:31:30,1:30:1035:1:35:0,-5.8333,-89.9623 dDocent_Contig_12098 136 . C A 71.078 . AB=0;ABP=0;AC=2;AF=0.333333;AN=6;AO=2;CIGAR=1X;DP=44;DPB=44;DPRA=0.0952381;EPP=3.0103;EPPR=94.2121;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=1.69407e-21;PAIRED=0;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=73;QR=1436;RO=42;RPL=0;RPP=7.35324;RPPR=94.2121;RPR=2;RUN=1;SAF=1;SAP=3.0103;SAR=1;SRF=0;SRP=94.2121;SRR=42;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:37:37,0:37:1262:0:0:0,-11.1381,-113.878 0/0:5:5,0:5:174:0:0:0,-1.50515,-16.002 1/1:2:0,2:0:0:2:73:-6.9313,-0.60206,0 dDocent_Contig_12099 17 . T C 1135.35 . AB=0.349398;ABP=19.3617;AC=4;AF=0.666667;AN=6;AO=29;CIGAR=1X2M;DP=83;DPB=83;DPRA=0;EPP=65.983;EPPR=81.1833;GTI=0;LEN=1;MEANALT=2;MQM=60;MQMR=60;NS=3;NUMALT=2;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=1169;QR=1396;RO=36;RPL=0;RPP=65.983;RPPR=81.1833;RPR=29;RUN=1;SAF=29;SAP=65.983;SAR=0;SRF=36;SRP=81.1833;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|1:46:28,5,13:28:1093:5,13:199,518:-34.2253,-26.2691,-114.602,0,-73.4509,-85.9238 1|1:23:1,11,11:1:39:11,11:445,447:-70.0674,-33.6786,-33.5718,-33.4992,0,-33.3926 0|1:14:7,2,5:7:264:2,5:70,204:-14.7654,-11.1947,-32.2066,0,-15.9645,-20.1477 dDocent_Contig_12101 7 . A C 606.884 . AB=0.4;ABP=10.3933;AC=3;AF=0.5;AN=6;AO=34;CIGAR=1X3M;DP=85;DPB=85;DPRA=0;EPP=76.8404;EPPR=61.6401;GTI=0;LEN=1;MEANALT=3;MQM=33.8824;MQMR=59.1852;NS=3;NUMALT=3;ODDS=0;PAIRED=0.0588235;PAIREDR=0.814815;PAO=0;PQA=0;PQR=0;PRO=0;QA=981;QR=1009;RO=27;RPL=0;RPP=76.8404;RPPR=61.6401;RPR=34;RUN=1;SAF=34;SAP=76.8404;SAR=0;SRF=27;SRP=61.6401;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|1:54:15,2,12,22:15:552:2,12,22:78,467,618:-40.1444,-38.287,-82.8294,-6.24231,-45.0301,-47.7903,0,-38.7554,-6.73173,-38.5025 0|1:11:3,0,0,8:3:112:0,0,8:0,0,213:-14.7052,-15.6083,-24.7677,-15.6083,-24.7677,-24.7677,0,-9.4969,-9.4969,-7.08866 0|1:20:9,6,0,4:9:345:6,0,4:228,0,150:-11.3603,0,-26.5175,-14.0695,-28.3237,-42.4099,-1.99242,-16.2729,-30.3512,-29.147 dDocent_Contig_12103 35 . A G 72.7758 . AB=0.113924;ABP=105.289;AC=1;AF=0.166667;AN=6;AO=11;CIGAR=1X;DP=124;DPB=124;DPRA=3.92857;EPP=26.8965;EPPR=248.387;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=37.354;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=440;QR=4466;RO=113;RPL=0;RPP=26.8965;RPPR=248.387;RPR=11;RUN=1;SAF=11;SAP=26.8965;SAR=0;SRF=113;SRP=248.387;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:79:70,9:70:2762:9:358:-8.80042,0,-170.063 0/0:14:14,0:14:551:0:0:0,-4.21442,-34.8468 0/0:31:29,2:29:1153:2:82:0,-1.55225,-71.7269 dDocent_Contig_12104 17 . T A 424.554 . AB=0.303571;ABP=21.778;AC=2;AF=0.333333;AN=6;AO=17;CIGAR=1X;DP=58;DPB=58;DPRA=14;EPP=39.9253;EPPR=92.0407;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=0.97561;PAO=0;PQA=0;PQR=0;PRO=0;QA=690;QR=1646;RO=41;RPL=0;RPP=39.9253;RPPR=92.0407;RPR=17;RUN=1;SAF=17;SAP=39.9253;SAR=0;SRF=41;SRP=92.0407;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:34:21,13:21:848:13:527:-37.5421,0,-66.3974 0/0:2:2,0:2:82:0:0:0,-0.60206,-7.77968 0/1:22:18,4:18:716:4:163:-8.43577,0,-58.1386 dDocent_Contig_12105 10 . G T 121.403 . AB=0.16129;ABP=64.7922;AC=2;AF=0.333333;AN=6;AO=10;CIGAR=1X;DP=72;DPB=72;DPRA=3.1;EPP=3.0103;EPPR=137.642;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=0;PAIREDR=0.725806;PAO=0;PQA=0;PQR=0;PRO=0;QA=371;QR=2449;RO=62;RPL=0;RPP=24.725;RPPR=137.642;RPR=10;RUN=1;SAF=5;SAP=3.0103;SAR=5;SRF=62;SRP=137.642;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:44:36,8:36:1424:8:294:-13.5633,0,-115.165 0/0:10:10,0:10:391:0:0:0,-3.0103,-35.5463 0/1:18:16,2:16:634:2:77:-1.88966,0,-51.9725 dDocent_Contig_12106 87 . C A 30.3096 . AB=0.285714;ABP=5.80219;AC=1;AF=0.25;AN=4;AO=2;CIGAR=1X;DP=15;DPB=15;DPRA=0.875;EPP=7.35324;EPPR=31.2394;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=2;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=72;QR=457;RO=13;RPL=2;RPP=7.35324;RPPR=31.2394;RPR=0;RUN=1;SAF=2;SAP=7.35324;SAR=0;SRF=13;SRP=31.2394;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:7:5,2:5:177:2:72:-4.72951,0,-14.1698 0/0:8:8,0:8:280:0:0:0,-2.40824,-25.539 ./.:.:.:.:.:.:.:. dDocent_Contig_12107 9 . T A 142.934 . AB=0.241379;ABP=19.8579;AC=1;AF=0.166667;AN=6;AO=8;CIGAR=1X;DP=158;DPB=158;DPRA=0.69697;EPP=20.3821;EPPR=320.103;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=58.8267;NS=3;NUMALT=1;ODDS=0;PAIRED=0;PAIREDR=0.233333;PAO=0;PQA=0;PQR=0;PRO=0;QA=309;QR=5752;RO=150;RPL=0;RPP=20.3821;RPPR=328.731;RPR=8;RUN=1;SAF=8;SAP=20.3821;SAR=0;SRF=149;SRP=320.103;SRR=1;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:63:62,1:62:2384:1:37:0,-15.2671,-211.001 0/1:29:22,7:22:850:7:272:-16.1174,0,-68.0649 0/0:66:66,0:66:2518:0:0:0,-19.868,-225.555 dDocent_Contig_12108 31 . C T 299.453 . AB=0.259259;ABP=30.1939;AC=3;AF=0.5;AN=6;AO=14;CIGAR=1X;DP=54;DPB=54;DPRA=0;EPP=33.4109;EPPR=89.8692;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=562;QR=1579;RO=40;RPL=0;RPP=33.4109;RPPR=89.8692;RPR=14;RUN=1;SAF=14;SAP=33.4109;SAR=0;SRF=40;SRP=89.8692;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:33:28,5:28:1115:5:200:-8.44534,0,-90.6968 0/1:8:4,4:4:149:4:159:-12.2832,0,-11.36 0/1:13:8,5:8:315:5:203:-14.7397,0,-24.7973 dDocent_Contig_12109 136 . T A 159.321 . AB=0.4375;ABP=3.55317;AC=1;AF=0.166667;AN=6;AO=7;CIGAR=1X;DP=55;DPB=55;DPRA=0.820513;EPP=18.2106;EPPR=107.241;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=247;QR=1762;RO=48;RPL=0;RPP=18.2106;RPPR=107.241;RPR=7;RUN=1;SAF=0;SAP=18.2106;SAR=7;SRF=0;SRP=107.241;SRR=48;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:37:37,0:37:1366:0:0:0,-11.1381,-123.238 0/0:2:2,0:2:71:0:0:0,-0.60206,-6.7419 0/1:16:9,7:9:325:7:247:-17.7556,0,-24.779 dDocent_Contig_12111 32 . G T 37.586 . AB=0.148148;ABP=32.0437;AC=2;AF=0.333333;AN=6;AO=4;CIGAR=1X;DP=68;DPB=68;DPRA=0.329268;EPP=11.6962;EPPR=141.985;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=162;QR=2548;RO=64;RPL=0;RPP=11.6962;RPPR=141.985;RPR=4;RUN=1;SAF=4;SAP=11.6962;SAR=0;SRF=64;SRP=141.985;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:41:41,0:41:1647:0:0:0,-12.3422,-148.453 0/1:10:8,2:8:323:2:81:-4.67543,0,-26.4287 0/1:17:15,2:15:578:2:81:-2.56822,0,-47.2303 dDocent_Contig_12112 7 . A G 636.578 . AB=0.176471;ABP=18.4661;AC=0;AF=0;AN=6;AO=3;CIGAR=1X4M1X;DP=64;DPB=64;DPRA=0;EPP=9.52472;EPPR=57.2971;GTI=0;LEN=1;MEANALT=4;MQM=60;MQMR=60;NS=3;NUMALT=4;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=106;QR=946;RO=25;RPL=0;RPP=9.52472;RPPR=57.2971;RPR=3;RUN=1;SAF=3;SAP=9.52472;SAR=0;SRF=25;SRP=57.2971;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|0:32:13,4,3,0,12:13:482:4,3,0,12:160,110,0,484:-35.9938,-26.7261,-64.9443,-30.9214,-57.1591,-69.4382,-39.9072,-66.1484,-70.3413,-79.3307,0,-26.238,-30.4345,-39.4243,-35.812 0|0:15:8,1,1,0,5:8:308:1,1,0,5:40,39,0,200:-14.0701,-13.183,-38.1639,-13.2739,-35.2591,-38.2538,-16.4784,-38.4649,-38.5548,-41.7606,0,-21.985,-22.0753,-25.2815,-23.7763 0|0:17:4,2,2,3,6:4:156:2,2,3,6:79,77,106,246:-19.1167,-13.8191,-26.0404,-13.9995,-20.3208,-26.2203,-11.7,-18.0196,-18.1998,-23.6169,0,-6.32476,-6.50554,-4.20703,-11.0229 dDocent_Contig_12114 38 . T C 164.201 . AB=0.461538;ABP=3.17734;AC=1;AF=0.166667;AN=6;AO=6;CIGAR=1X;DP=35;DPB=35;DPRA=1.18182;EPP=16.0391;EPPR=65.983;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=242;QR=1124;RO=29;RPL=0;RPP=16.0391;RPPR=65.983;RPR=6;RUN=1;SAF=6;SAP=16.0391;SAR=0;SRF=29;SRP=65.983;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:4:4,0:4:157:0:0:0,-1.20412,-14.5088 0/1:13:7,6:7:260:6:242:-18.2439,0,-19.8367 0/0:18:18,0:18:707:0:0:0,-5.41854,-63.9591 dDocent_Contig_12115 25 . A G 366.461 . AB=0.242424;ABP=41.044;AC=2;AF=0.333333;AN=6;AO=16;CIGAR=1X;DP=67;DPB=67;DPRA=33;EPP=37.7539;EPPR=113.755;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=646;QR=2044;RO=51;RPL=0;RPP=37.7539;RPPR=113.755;RPR=16;RUN=1;SAF=16;SAP=37.7539;SAR=0;SRF=51;SRP=113.755;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:43:29,14:29:1176:14:564:-38.158,0,-93.1708 0/0:1:1,0:1:40:0:0:0,-0.30103,-3.99568 0/1:23:21,2:21:828:2:82:-0.855988,0,-67.9122 dDocent_Contig_12116 37 . T A 185.69 . AB=0.272727;ABP=17.8158;AC=3;AF=0.5;AN=6;AO=9;CIGAR=1X;DP=33;DPB=33;DPRA=0;EPP=22.5536;EPPR=55.1256;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=365;QR=965;RO=24;RPL=0;RPP=22.5536;RPPR=55.1256;RPR=9;RUN=1;SAF=9;SAP=22.5536;SAR=0;SRF=24;SRP=55.1256;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:13:8,5:8:322:5:203:-14.7397,0,-25.4345 0/1:12:10,2:10:404:2:81:-4.07337,0,-33.1081 0/1:8:6,2:6:239:2:81:-5.27749,0,-19.4761 dDocent_Contig_12118 192 . T C 69.3914 . AB=0.190476;ABP=20.4855;AC=1;AF=0.166667;AN=6;AO=4;CIGAR=1X;DP=33;DPB=33;DPRA=3.5;EPP=11.6962;EPPR=65.983;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=1.73472e-18;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=160;QR=1156;RO=29;RPL=4;RPP=11.6962;RPPR=65.983;RPR=0;RUN=1;SAF=0;SAP=11.6962;SAR=4;SRF=0;SRP=65.983;SRR=29;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:21:17,4:17:679:4:160:-8.46129,0,-55.1155 0/0:1:1,0:1:41:0:0:0,-0.30103,-4.09457 0/0:11:11,0:11:436:0:0:0,-3.31133,-39.5904 dDocent_Contig_12120 28 . T C 1035.1 . AB=0.474359;ABP=3.45573;AC=3;AF=0.5;AN=6;AO=37;CIGAR=1X;DP=78;DPB=78;DPRA=0;EPP=83.3548;EPPR=92.0407;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=1461;QR=1645;RO=41;RPL=0;RPP=83.3548;RPPR=92.0407;RPR=37;RUN=1;SAF=37;SAP=83.3548;SAR=0;SRF=41;SRP=92.0407;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:41:23,18:23:921:18:724:-53.1435,0,-70.8495 0/1:9:7,2:7:282:2:75:-4.41083,0,-23.0435 0/1:28:11,17:11:442:17:662:-51.4778,0,-31.7061 dDocent_Contig_12121 134 . A G 168.939 . AB=0.28125;ABP=16.3106;AC=2;AF=0.333333;AN=6;AO=9;CIGAR=1X;DP=34;DPB=34;DPRA=8;EPP=22.5536;EPPR=57.2971;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=326;QR=911;RO=25;RPL=0;RPP=22.5536;RPPR=57.2971;RPR=9;RUN=1;SAF=0;SAP=22.5536;SAR=9;SRF=0;SRP=57.2971;SRR=25;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:14:8,6:8:287:6:217:-15.6667,0,-21.9608 0/0:2:2,0:2:74:0:0:0,-0.60206,-7.02588 0/1:18:15,3:15:550:3:109:-4.74946,0,-44.4205 dDocent_Contig_12122 102 . N C 90.6132 . AB=0;ABP=0;AC=4;AF=1;AN=4;AO=1;CIGAR=6X;DP=4;DPB=4;DPRA=0;EPP=5.18177;EPPR=0;GTI=0;LEN=1;MEANALT=1;MQM=42;MQMR=0;NS=2;NUMALT=3;ODDS=0;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=35;QR=0;RO=0;RPL=0;RPP=5.18177;RPPR=0;RPR=1;RUN=1;SAF=1;SAP=5.18177;SAR=0;SRF=0;SRP=0;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL .:.:.:.:.:.:.:. 1|1:3:0,1,2,0:0:0:1,2,0:33,70,0:-7.2555,-4.56804,-4.26701,-2.9981,0,-2.39604,-7.2555,-4.56804,-2.9981,-7.2555 1|1:1:0,0,0,1:0:0:0,0,1:0,0,35:-3.42101,-3.42101,-3.42101,-3.42101,-3.42101,-3.42101,-0.30103,-0.30103,-0.30103,0 dDocent_Contig_12123 132 . C G 426.418 . AB=0.875;ABP=22.5536;AC=1;AF=0.166667;AN=6;AO=14;CIGAR=1X;DP=41;DPB=41;DPRA=1.28;EPP=33.4109;EPPR=61.6401;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=540;QR=1040;RO=27;RPL=0;RPP=33.4109;RPPR=61.6401;RPR=14;RUN=1;SAF=0;SAP=33.4109;SAR=14;SRF=0;SRP=61.6401;SRR=27;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:16:2,14:2:78:14:540:-44.1287,0,-2.58699 0/0:9:9,0:9:340:0:0:0,-2.70927,-30.9542 0/0:16:16,0:16:622:0:0:0,-4.81648,-56.3202 dDocent_Contig_12124 60 . T C 220.927 . AB=0.409091;ABP=4.58955;AC=2;AF=0.333333;AN=6;AO=9;CIGAR=1X;DP=36;DPB=36;DPRA=0.785714;EPP=22.5536;EPPR=61.6401;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=350;QR=1068;RO=27;RPL=9;RPP=22.5536;RPPR=61.6401;RPR=0;RUN=1;SAF=9;SAP=22.5536;SAR=0;SRF=27;SRP=61.6401;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:14:14,0:14:560:0:0:0,-4.21442,-50.7435 0/1:8:4,4:4:158:4:148:-11.2685,0,-12.1922 0/1:14:9,5:9:350:5:202:-14.3471,0,-27.6443 dDocent_Contig_12125 45 . T C 1763.07 . AB=0.130653;ABP=238.806;AC=3;AF=0.5;AN=6;AO=26;CIGAR=1X6M;DP=199;DPB=199;DPRA=0;EPP=59.4686;EPPR=4.08507;GTI=0;LEN=1;MEANALT=2.66667;MQM=60;MQMR=60;NS=3;NUMALT=3;ODDS=0;PAIRED=0.884615;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=1044;QR=3925;RO=99;RPL=26;RPP=59.4686;RPPR=4.08507;RPR=0;RUN=1;SAF=26;SAP=59.4686;SAR=0;SRF=99;SRP=217.986;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|1:98:44,7,31,16:44:1732:7,31,16:276,1220,648:-87.1053,-77.6426,-218.008,0,-119.761,-133.137,-46.9146,-166.681,-89.0339,-184.573 0|1:45:25,0,16,3:25:996:0,16,3:0,616,120:-43.0347,-50.5604,-132.584,0,-82.0185,-77.202,-40.6732,-122.699,-72.1332,-121.796 0|1:56:30,0,19,7:30:1197:0,19,7:0,739,276:-51.6895,-60.7204,-159.308,0,-98.5869,-92.8673,-38.0116,-136.601,-75.8805,-134.494 dDocent_Contig_12126 14 . G A 67.316 . AB=0.235294;ABP=13.3567;AC=2;AF=0.333333;AN=6;AO=4;CIGAR=1X;DP=40;DPB=40;DPRA=0.369565;EPP=11.6962;EPPR=81.1833;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=162;QR=1453;RO=36;RPL=0;RPP=11.6962;RPPR=81.1833;RPR=4;RUN=1;SAF=4;SAP=11.6962;SAR=0;SRF=36;SRP=81.1833;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:23:23,0:23:926:0:0:0,-6.92369,-83.6444 0/1:6:4,2:4:159:2:80:-5.78561,0,-12.8853 0/1:11:9,2:9:368:2:82:-4.46835,0,-30.174 dDocent_Contig_12130 137 . C A 180.947 . AB=0.294118;ABP=15.5282;AC=3;AF=0.5;AN=6;AO=10;CIGAR=1X;DP=34;DPB=34;DPRA=0;EPP=24.725;EPPR=55.1256;GTI=0;LEN=1;MEANALT=1;MQM=45.1;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=381;QR=930;RO=24;RPL=0;RPP=24.725;RPPR=55.1256;RPR=10;RUN=1;SAF=0;SAP=24.725;SAR=10;SRF=0;SRP=55.1256;SRR=24;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:14:12,2:12:443:2:76:-2.85245,0,-35.9817 0/1:5:3,2:3:120:2:80:-4.91419,0,-9.68254 0/1:15:9,6:9:367:6:225:-15.8309,0,-28.8798 dDocent_Contig_12133 8 . T C 917.709 . AB=0.137405;ABP=302.209;AC=2;AF=0.333333;AN=6;AO=36;CIGAR=1X6M;DP=288;DPB=288;DPRA=5.03846;EPP=81.1833;EPPR=443.819;GTI=0;LEN=1;MEANALT=2.5;MQM=60;MQMR=60;NS=3;NUMALT=2;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=1385;QR=7970;RO=203;RPL=0;RPP=81.1833;RPPR=443.819;RPR=36;RUN=1;SAF=36;SAP=81.1833;SAR=0;SRF=203;SRP=443.819;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|1:179:114,36,28:114:4473:36,28:1375,1082:-78.4811,0,-357.029,-23.9261,-278.997,-383.366 0|0:26:25,1,0:25:986:1,0:39,0:0,-3.93022,-85.1502,-7.52575,-85.4512,-88.6569 0|1:83:64,11,8:64:2511:11,8:438,303:-16.8127,0,-203.204,-11.246,-181.676,-215.336 dDocent_Contig_12134 19 . T C 673.639 . AB=0.325581;ABP=25.735;AC=3;AF=0.5;AN=6;AO=28;CIGAR=1X;DP=86;DPB=86;DPRA=0;EPP=63.8115;EPPR=128.956;GTI=0;LEN=1;MEANALT=1;MQM=57.4286;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=0.892857;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=1088;QR=2339;RO=58;RPL=0;RPP=63.8115;RPPR=128.956;RPR=28;RUN=1;SAF=28;SAP=63.8115;SAR=0;SRF=58;SRP=128.956;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:62:46,16:46:1856:16:631:-38.1298,0,-148.579 0/1:6:5,1:5:201:1:38:-1.98305,0,-16.6643 0/1:18:7,11:7:282:11:419:-32.6362,0,-20.3344 dDocent_Contig_12135 9 . T G 1971.62 . AB=0.570248;ABP=8.19671;AC=3;AF=0.5;AN=6;AO=69;CIGAR=1X;DP=121;DPB=121;DPRA=0;EPP=152.842;EPPR=115.927;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=2640;QR=1973;RO=52;RPL=0;RPP=152.842;RPPR=115.927;RPR=69;RUN=1;SAF=69;SAP=152.842;SAR=0;SRF=52;SRP=115.927;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:52:27,25:27:1025:25:959:-70.9698,0,-76.9015 0/1:8:1,7:1:39:7:266:-21.8935,0,-1.48832 0/1:61:24,37:24:909:37:1415:-109.268,0,-63.7629 dDocent_Contig_12136 13 . G A 48.738 . AB=0.666667;ABP=3.73412;AC=1;AF=0.166667;AN=6;AO=5;CIGAR=1X;DP=107;DPB=107;DPRA=1.48148;EPP=13.8677;EPPR=224.5;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=202;QR=4085;RO=102;RPL=0;RPP=13.8677;RPPR=224.5;RPR=5;RUN=1;SAF=5;SAP=13.8677;SAR=0;SRF=102;SRP=224.5;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:77:74,3:74:2970:3:122:0,-11.8068,-256.012 0/1:3:1,2:1:41:2:80:-6.68848,0,-3.19148 0/0:27:27,0:27:1074:0:0:0,-8.12781,-96.9469 dDocent_Contig_12138 52 . A G 44.5068 . AB=0.4;ABP=3.44459;AC=1;AF=0.166667;AN=6;AO=2;CIGAR=1X;DP=23;DPB=23;DPRA=0.555556;EPP=7.35324;EPPR=48.6112;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=82;QR=828;RO=21;RPL=2;RPP=7.35324;RPPR=48.6112;RPR=0;RUN=1;SAF=2;SAP=7.35324;SAR=0;SRF=21;SRP=48.6112;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:13:13,0:13:506:0:0:0,-3.91339,-45.884 0/0:5:5,0:5:200:0:0:0,-1.50515,-18.3793 0/1:5:3,2:3:122:2:82:-6.27453,0,-9.86734 dDocent_Contig_12139 35 . G A 111.95 . AB=0.666667;ABP=4.45795;AC=1;AF=0.166667;AN=6;AO=4;CIGAR=1X1M1X;DP=20;DPB=20;DPRA=0.857143;EPP=11.6962;EPPR=37.7539;GTI=0;LEN=1;MEANALT=1;MQM=54;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=0;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=161;QR=632;RO=16;RPL=0;RPP=11.6962;RPPR=37.7539;RPR=4;RUN=1;SAF=0;SAP=11.6962;SAR=4;SRF=16;SRP=37.7539;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|0:8:8,0:8:315:0:0:0,-2.40824,-28.7147 0|1:6:2,4:2:77:4:161:-13.0188,0,-5.50296 0|0:6:6,0:6:240:0:0:0,-1.80618,-21.976 dDocent_Contig_12141 69 . A G 40.7428 . AB=0.4;ABP=3.44459;AC=1;AF=0.166667;AN=6;AO=2;CIGAR=1X;DP=34;DPB=34;DPRA=0.344828;EPP=7.35324;EPPR=72.4974;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=0;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=78;QR=1200;RO=32;RPL=2;RPP=7.35324;RPPR=72.4974;RPR=0;RUN=1;SAF=2;SAP=7.35324;SAR=0;SRF=32;SRP=72.4974;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:11:11,0:11:404:0:0:0,-3.31133,-36.7009 0/1:5:3,2:3:119:2:78:-5.89815,0,-9.59003 0/0:18:18,0:18:677:0:0:0,-5.41854,-61.2611 dDocent_Contig_12142 12 . A G 634.117 . AB=0.378378;ABP=7.76406;AC=4;AF=0.666667;AN=6;AO=21;CIGAR=1X;DP=44;DPB=44;DPRA=0;EPP=48.6112;EPPR=52.9542;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=3.46945e-18;PAIRED=0.952381;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=855;QR=934;RO=23;RPL=0;RPP=48.6112;RPPR=52.9542;RPR=21;RUN=1;SAF=21;SAP=48.6112;SAR=0;SRF=23;SRP=52.9542;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:16:10,6:10:407:6:246:-17.7036,0,-32.1739 1/1:7:0,7:0:0:7:281:-25.6622,-2.10721,0 0/1:21:13,8:13:527:8:328:-23.5687,0,-41.4555 dDocent_Contig_12143 10 . C T 57.4611 . AB=0.292683;ABP=18.3165;AC=2;AF=0.333333;AN=6;AO=12;CIGAR=3M1I2M1X;DP=41;DPB=43.8333;DPRA=0;EPP=29.068;EPPR=48.6112;GTI=0;LEN=1;MEANALT=2.33333;MQM=18.5;MQMR=46.1429;NS=3;NUMALT=3;ODDS=0;PAIRED=0;PAIREDR=0.571429;PAO=0;PQA=0;PQR=0;PRO=0;QA=468;QR=809;RO=21;RPL=0;RPP=29.068;RPPR=48.6112;RPR=12;RUN=1;SAF=12;SAP=29.068;SAR=0;SRF=21;SRP=48.6112;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|0:15:5,3,4,2:5:193:3,4,2:115,155,78:-4.81232,-2.93114,-17.9399,-0.716272,-13.2799,-15.4325,0,-12.5508,-10.3431,-15.3302 0|1:10:7,0,3,0:7:268:0,3,0:0,117,0:-1.74184,-3.84905,-20.302,0,-16.6598,-15.7567,-3.84905,-20.302,-16.6598,-20.302 0|1:16:9,2,5,0:9:348:2,5,0:77,196,0:-4.35961,-5.3501,-29.6359,0,-23.2653,-23.4579,-7.06888,-30.238,-24.963,-31.9543 dDocent_Contig_12144 10 . C T 370.601 . AB=0.155556;ABP=49.3833;AC=2;AF=0.333333;AN=6;AO=7;CIGAR=1X1M1I3M1X1M;DP=45;DPB=44.1429;DPRA=0;EPP=18.2106;EPPR=57.2971;GTI=0;LEN=1;MEANALT=1.66667;MQM=60;MQMR=60;NS=3;NUMALT=2;ODDS=0;PAIRED=1;PAIREDR=0.8;PAO=0;PQA=0;PQR=0;PRO=0;QA=279;QR=981;RO=25;RPL=0;RPP=18.2106;RPPR=57.2971;RPR=7;RUN=1;SAF=7;SAP=18.2106;SAR=0;SRF=25;SRP=57.2971;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|0:26:18,4,4:18:700:4,4:159,161:-7.85306,-0.183153,-56.4862,0,-44.4187,-56.3071 1|0:12:1,2,9:1:40:2,9:80,359:-32.5593,-26.27,-28.9631,-3.29508,0,-3.88089 0|1:7:6,1,0:6:241:1,0:40,0:-1.88847,0,-19.9591,-3.69465,-20.2601,-23.555 dDocent_Contig_12146 7 . A G 885.239 . AB=0.0759494;ABP=126.399;AC=0;AF=0;AN=6;AO=6;CIGAR=1X3M1X2M1X;DP=84;DPB=84;DPRA=0;EPP=16.0391;EPPR=74.6689;GTI=0;LEN=1;MEANALT=3;MQM=41.6667;MQMR=60;NS=3;NUMALT=3;ODDS=1.38778e-17;PAIRED=0;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=218;QR=1295;RO=33;RPL=0;RPP=16.0391;RPPR=74.6689;RPR=6;RUN=1;SAF=6;SAP=16.0391;SAR=0;SRF=33;SRP=74.6689;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|0:58:23,5,10,20:23:901:5,10,20:179,396,799:-56.1797,-49.5884,-122.177,-31.956,-92.5377,-103.044,0,-60.5912,-42.9606,-68.0854 0|0:5:4,0,1,0:4:158:0,1,0:0,39,0:-2.39141,-3.59553,-16.6014,0,-13.3965,-13.0955,-3.59553,-16.6014,-13.3965,-16.6014 0|0:21:6,1,1,13:6:236:1,1,13:39,40,518:-35.4204,-34.0173,-53.1462,-35.9216,-52.1399,-55.046,0,-16.2856,-18.2049,-15.5815 dDocent_Contig_12147 84 . C T 137.365 . AB=0.333333;ABP=8.07707;AC=2;AF=0.5;AN=4;AO=7;CIGAR=1X;DP=21;DPB=21;DPRA=0;EPP=18.2106;EPPR=33.4109;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=2;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=256;QR=501;RO=14;RPL=7;RPP=18.2106;RPPR=33.4109;RPR=0;RUN=1;SAF=7;SAP=18.2106;SAR=0;SRF=14;SRP=33.4109;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL ./.:.:.:.:.:.:.:. 0/1:11:7,4:7:253:4:148:-10.3706,0,-19.8083 0/1:10:7,3:7:248:3:108:-7.06487,0,-19.6539 dDocent_Contig_12148 107 . N C 122.993 . AB=0;ABP=0;AC=2;AF=1;AN=2;AO=4;CIGAR=1X;DP=4;DPB=4;DPRA=0;EPP=11.6962;EPPR=0;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=0;NS=1;NUMALT=1;ODDS=7.37776;PAIRED=1;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=133;QR=0;RO=0;RPL=0;RPP=11.6962;RPPR=0;RPR=4;RUN=1;SAF=0;SAP=11.6962;SAR=4;SRF=0;SRP=0;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 1/1:4:0,4:0:0:4:133:-12.299,-1.20412,0 ./.:.:.:.:.:.:.:. ./.:.:.:.:.:.:.:. dDocent_Contig_12149 47 . T C 228.664 . AB=0.218182;ABP=40.9518;AC=2;AF=0.333333;AN=6;AO=12;CIGAR=1X;DP=65;DPB=65;DPRA=2.75;EPP=29.068;EPPR=118.098;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=3.46945e-18;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=469;QR=2104;RO=53;RPL=0;RPP=29.068;RPPR=118.098;RPR=12;RUN=1;SAF=12;SAP=29.068;SAR=0;SRF=53;SRP=118.098;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:36:28,8:28:1107:8:311:-17.5088,0,-89.0783 0/1:19:15,4:15:600:4:158:-8.8804,0,-48.6181 0/0:10:10,0:10:397:0:0:0,-3.0103,-36.0868 dDocent_Contig_12150 9 . T C 166.731 . AB=0.147059;ABP=39.7976;AC=0;AF=0;AN=6;AO=5;CIGAR=2X;DP=89;DPB=89;DPRA=1.78947;EPP=13.8677;EPPR=150.67;GTI=0;LEN=1;MEANALT=3;MQM=60;MQMR=60;NS=3;NUMALT=3;ODDS=0;PAIRED=1;PAIREDR=0.852941;PAO=0;PQA=0;PQR=0;PRO=0;QA=192;QR=2591;RO=68;RPL=0;RPP=13.8677;RPPR=150.67;RPR=5;RUN=1;SAF=5;SAP=13.8677;SAR=0;SRF=68;SRP=150.67;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|0:19:18,0,1,0:18:701:0,1,0:0,39,0:0,-5.41854,-63.0345,-1.82301,-59.8285,-59.5275,-5.41854,-63.0345,-59.8285,-63.0345 0|0:34:23,5,5,1:23:865:5,5,1:192,195,39:-9.10796,-0.273063,-69.627,0,-55.1005,-69.3579,-12.8255,-67.9259,-67.6568,-83.387 0|0:36:27,0,6,3:27:1025:0,6,3:0,233,117:-11.017,-19.1448,-103.19,0,-84.0427,-82.2365,-9.52661,-93.5715,-74.4241,-92.6684 dDocent_Contig_12151 14 . C A 114.381 . AB=0.294118;ABP=9.26925;AC=1;AF=0.166667;AN=6;AO=5;CIGAR=1X;DP=75;DPB=75;DPRA=0.586207;EPP=13.8677;EPPR=155.013;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=200;QR=2800;RO=70;RPL=0;RPP=13.8677;RPPR=155.013;RPR=5;RUN=1;SAF=5;SAP=13.8677;SAR=0;SRF=70;SRP=155.013;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:26:26,0:26:1039:0:0:0,-7.82678,-93.797 0/0:32:32,0:32:1278:0:0:0,-9.63296,-115.283 0/1:17:12,5:12:483:5:200:-13.262,0,-38.7032 dDocent_Contig_12152 38 . A T 730.418 . AB=0.229167;ABP=33.5919;AC=2;AF=0.333333;AN=6;AO=11;CIGAR=1M1X7M;DP=121;DPB=140;DPRA=0;EPP=26.8965;EPPR=144.156;GTI=0;LEN=1;MEANALT=4;MQM=60;MQMR=60;NS=3;NUMALT=4;ODDS=0;PAIRED=1;PAIREDR=0.938462;PAO=0;PQA=0;PQR=0;PRO=0;QA=446;QR=2566;RO=65;RPL=0;RPP=26.8965;RPPR=144.156;RPR=11;RUN=1;SAF=11;SAP=26.8965;SAR=0;SRF=65;SRP=144.156;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|0:73:39,19,3,0,10:39:1533:19,3,0,10:746,121,0,403:-49.6087,0,-120.371,-51.3739,-116.116,-176.566,-61.3488,-126.091,-177.469,-187.443,-28.1305,-92.8735,-144.252,-154.227,-151.216 0|1:15:10,1,0,3,1:10:395:1,0,3,1:40,0,122,41:-7.05393,-6.77063,-38.9654,-10.0642,-39.2664,-42.5616,0,-29.201,-32.4964,-31.5933,-6.67916,-35.8815,-39.1767,-29.1111,-38.8757 0|1:33:16,4,2,8,2:16:638:4,2,8,2:161,78,324,82:-21.9021,-13.4492,-64.7851,-20.3086,-59.5784,-72.2458,0,-39.2712,-46.1304,-50.1329,-19.9494,-59.2203,-66.0791,-45.7721,-71.888 dDocent_Contig_12155 65 . C T 59.8217 . AB=0.3;ABP=6.48466;AC=1;AF=0.166667;AN=6;AO=3;CIGAR=1X;DP=32;DPB=32;DPRA=0.909091;EPP=9.52472;EPPR=65.983;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=116;QR=1166;RO=29;RPL=3;RPP=9.52472;RPPR=65.983;RPR=0;RUN=1;SAF=3;SAP=9.52472;SAR=0;SRF=29;SRP=65.983;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:18:18,0:18:732:0:0:0,-5.41854,-66.2042 0/0:4:4,0:4:157:0:0:0,-1.20412,-14.5086 0/1:10:7,3:7:277:3:116:-7.80598,0,-22.2885 dDocent_Contig_12156 49 . T C 669.405 . AB=0.534884;ABP=3.46479;AC=2;AF=0.333333;AN=6;AO=23;CIGAR=1X;DP=50;DPB=50;DPRA=3.07143;EPP=52.9542;EPPR=61.6401;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=919;QR=1047;RO=27;RPL=0;RPP=52.9542;RPPR=61.6401;RPR=23;RUN=1;SAF=23;SAP=52.9542;SAR=0;SRF=27;SRP=61.6401;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:38:18,20:18:691:20:800:-60.8735,0,-51.0723 0/0:7:7,0:7:277:0:0:0,-2.10721,-25.2983 0/1:5:2,3:2:79:3:119:-9.58986,0,-5.99209 dDocent_Contig_12157 35 . T G 1776.62 . AB=0.508197;ABP=3.0815;AC=3;AF=0.5;AN=6;AO=62;CIGAR=1X;DP=122;DPB=122;DPRA=0;EPP=137.642;EPPR=133.299;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=2433;QR=2417;RO=60;RPL=0;RPP=137.642;RPPR=133.299;RPR=62;RUN=1;SAF=62;SAP=137.642;SAR=0;SRF=60;SRP=133.299;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:67:35,32:35:1411:32:1234:-91.1586,0,-107.071 0/1:11:4,7:4:159:7:277:-21.987,0,-11.3801 0/1:44:21,23:21:847:23:922:-70.0394,0,-63.2972 dDocent_Contig_12158 12 . G A 1080.23 . AB=0.469136;ABP=3.68051;AC=3;AF=0.5;AN=6;AO=38;CIGAR=1X;DP=81;DPB=81;DPRA=0;EPP=85.5263;EPPR=96.3836;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=1521;QR=1736;RO=43;RPL=0;RPP=85.5263;RPPR=96.3836;RPR=38;RUN=1;SAF=38;SAP=85.5263;SAR=0;SRF=43;SRP=96.3836;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:31:23,8:23:929:8:325:-20.2875,0,-74.5807 0/1:20:5,15:5:198:15:609:-49.1265,0,-12.1764 0/1:30:15,15:15:609:15:587:-44.1323,0,-46.1165 dDocent_Contig_12159 107 . N A 83.309 . AB=0;ABP=0;AC=2;AF=1;AN=2;AO=3;CIGAR=1X3M1X;DP=3;DPB=3;DPRA=0;EPP=9.52472;EPPR=0;GTI=0;LEN=1;MEANALT=1;MQM=40;MQMR=0;NS=1;NUMALT=1;ODDS=6.68461;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=91;QR=0;RO=0;RPL=0;RPP=9.52472;RPPR=0;RPR=3;RUN=1;SAF=0;SAP=9.52472;SAR=3;SRF=0;SRP=0;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 1|1:3:0,3:0:0:3:91:-8.33035,-0.90309,0 .:.:.:.:.:.:.:. .:.:.:.:.:.:.:. dDocent_Contig_12160 10 . C T 160.079 . AB=0.318182;ABP=9.32731;AC=2;AF=0.333333;AN=6;AO=7;CIGAR=1X;DP=51;DPB=51;DPRA=0.37931;EPP=18.2106;EPPR=98.5551;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=282;QR=1776;RO=44;RPL=0;RPP=18.2106;RPPR=98.5551;RPR=7;RUN=1;SAF=7;SAP=18.2106;SAR=0;SRF=44;SRP=98.5551;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:29:29,0:29:1165:0:0:0,-8.72987,-105.126 0/1:7:4,3:4:163:3:119:-8.9878,0,-12.9512 0/1:15:11,4:11:448:4:163:-10.543,0,-36.1605 dDocent_Contig_12161 1 . N G 76.718 . AB=0;ABP=0;AC=2;AF=1;AN=2;AO=2;CIGAR=1X;DP=2;DPB=2;DPRA=0;EPP=7.35324;EPPR=0;GTI=0;LEN=1;MEANALT=1;MQM=57;MQMR=0;NS=1;NUMALT=1;ODDS=5.99146;PAIRED=1;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=81;QR=0;RO=0;RPL=0;RPP=7.35324;RPPR=0;RPR=2;RUN=1;SAF=2;SAP=7.35324;SAR=0;SRF=0;SRP=0;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL ./.:.:.:.:.:.:.:. 1/1:2:0,2:0:0:2:81:-7.67072,-0.60206,0 ./.:.:.:.:.:.:.:. dDocent_Contig_12162 45 . T G 589.88 . AB=0.184524;ABP=148.24;AC=2;AF=0.333333;AN=6;AO=31;CIGAR=1X;DP=173;DPB=173;DPRA=16.8;EPP=70.3259;EPPR=311.359;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=6.93889e-18;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=1249;QR=5413;RO=142;RPL=0;RPP=70.3259;RPPR=311.359;RPR=31;RUN=1;SAF=31;SAP=70.3259;SAR=0;SRF=142;SRP=311.359;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:104:88,16:88:3356:16:646:-27.1674,0,-270.841 0/0:5:5,0:5:195:0:0:0,-1.50515,-17.9239 0/1:64:49,15:49:1862:15:603:-35.3435,0,-148.556 dDocent_Contig_12163 29 . A G 32.7429 . AB=0.157895;ABP=22.325;AC=1;AF=0.166667;AN=6;AO=3;CIGAR=1X3M1X;DP=62;DPB=62;DPRA=0.883721;EPP=9.52472;EPPR=131.127;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=59.7288;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=0.745763;PAO=0;PQA=0;PQR=0;PRO=0;QA=116;QR=2323;RO=59;RPL=0;RPP=9.52472;RPPR=131.127;RPR=3;RUN=1;SAF=3;SAP=9.52472;SAR=0;SRF=59;SRP=131.127;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|0:14:14,0:14:554:0:0:0,-4.21442,-50.2024 0|0:29:29,0:29:1136:0:0:0,-8.72987,-102.511 0|1:19:16,3:16:633:3:116:-5.09797,0,-51.5876 dDocent_Contig_12164 202 . A G 261.95 . AB=0.478261;ABP=3.10471;AC=2;AF=0.333333;AN=6;AO=12;CIGAR=1X;DP=39;DPB=39;DPRA=0;EPP=29.068;EPPR=61.6401;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=425;QR=976;RO=27;RPL=12;RPP=29.068;RPPR=61.6401;RPR=0;RUN=1;SAF=0;SAP=29.068;SAR=12;SRF=0;SRP=61.6401;SRR=27;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:16:15,1:15:534:1:37:0,-1.11865,-44.693 0/1:13:3,10:3:111:10:351:-28.0118,0,-6.44053 0/1:10:9,1:9:331:1:37:-0.687529,0,-27.1304 dDocent_Contig_12165 124 . G A 73.1934 . AB=0.266667;ABP=10.1038;AC=1;AF=0.166667;AN=6;AO=7;CIGAR=1X1M1X;DP=58;DPB=58;DPRA=0;EPP=18.2106;EPPR=111.584;GTI=0;LEN=1;MEANALT=1.33333;MQM=60;MQMR=58.86;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=0.76;PAO=0;PQA=0;PQR=0;PRO=0;QA=253;QR=1659;RO=50;RPL=0;RPP=18.2106;RPPR=111.584;RPR=7;RUN=1;SAF=0;SAP=18.2106;SAR=7;SRF=0;SRP=111.584;SRR=50;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|0:17:16,1:16:529:1:34:0,-1.7186,-44.5089 0|1:15:10,4:10:305:4:147:-9.14307,0,-23.2947 0|0:26:24,2:24:825:2:72:0,-0.990144,-67.7048 dDocent_Contig_12166 9 . T A 335.613 . AB=0.388889;ABP=6.8707;AC=2;AF=0.5;AN=4;AO=14;CIGAR=1X3M1X2M2X1M2X;DP=36;DPB=36;DPRA=0;EPP=33.4109;EPPR=44.2683;GTI=0;LEN=1;MEANALT=2;MQM=48.7143;MQMR=60;NS=2;NUMALT=2;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=530;QR=747;RO=19;RPL=0;RPP=33.4109;RPPR=44.2683;RPR=14;RUN=1;SAF=14;SAP=33.4109;SAR=0;SRF=19;SRP=44.2683;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|1:25:14,9,2:14:548:9,2:330,79:-22.4871,0,-42.3466,-20.1949,-38.5545,-64.6687 .:.:.:.:.:.:.:. 0|1:11:5,5,0:5:199:5,0:200,0:-14.7731,0,-14.8985,-16.2783,-16.4036,-32.6671 dDocent_Contig_12168 22 . C A 153.677 . AB=0.216216;ABP=28.8919;AC=2;AF=0.333333;AN=6;AO=11;CIGAR=1X;DP=77;DPB=77;DPRA=0;EPP=26.8965;EPPR=146.327;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=3.46945e-18;PAIRED=1;PAIREDR=0.333333;PAO=0;PQA=0;PQR=0;PRO=0;QA=448;QR=2646;RO=66;RPL=0;RPP=26.8965;RPPR=146.327;RPR=11;RUN=1;SAF=11;SAP=26.8965;SAR=0;SRF=66;SRP=146.327;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:40:37,3:37:1500:3:123:0,-0.576411,-123.772 0/1:11:9,2:9:349:2:82:-4.46835,0,-28.4512 0/1:26:20,6:20:797:6:243:-14.4214,0,-64.2182 dDocent_Contig_12170 108 . T A 150.002 . AB=0.411765;ABP=4.1599;AC=1;AF=0.25;AN=4;AO=8;CIGAR=1X;DP=28;DPB=28;DPRA=0;EPP=20.3821;EPPR=46.4397;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=2;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=255;QR=541;RO=20;RPL=0;RPP=20.3821;RPPR=46.4397;RPR=8;RUN=1;SAF=0;SAP=20.3821;SAR=8;SRF=0;SRP=46.4397;SRR=20;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:11:10,1:10:299:1:13:0,-2.01134,-25.9037 ./.:.:.:.:.:.:.:. 0/1:17:10,7:10:242:7:242:-17.0002,0,-16.9019 dDocent_Contig_12172 40 . G A 266.256 . AB=0.220339;ABP=43.0905;AC=2;AF=0.333333;AN=6;AO=15;CIGAR=1X;DP=86;DPB=86;DPRA=0;EPP=35.5824;EPPR=157.185;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=0.901408;PAO=0;PQA=0;PQR=0;PRO=0;QA=596;QR=2727;RO=71;RPL=0;RPP=35.5824;RPPR=157.185;RPR=15;RUN=1;SAF=15;SAP=35.5824;SAR=0;SRF=71;SRP=157.185;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:44:38,6:38:1492:6:239:-8.63948,0,-121.278 0/0:27:25,2:25:917:2:72:0,-1.29117,-75.9727 0/1:15:8,7:8:318:7:285:-21.509,0,-24.4714 dDocent_Contig_12173 9 . T A 111.481 . AB=0.0972222;ABP=104.466;AC=0;AF=0;AN=6;AO=16;CIGAR=3X;DP=267;DPB=267;DPRA=0;EPP=37.7539;EPPR=485.077;GTI=0;LEN=1;MEANALT=4;MQM=30;MQMR=56.964;NS=3;NUMALT=2;ODDS=0;PAIRED=0;PAIREDR=0.5;PAO=0;PQA=0;PQR=0;PRO=0;QA=628;QR=8694;RO=222;RPL=0;RPP=37.7539;RPPR=485.077;RPR=16;RUN=1;SAF=16;SAP=37.7539;SAR=0;SRF=222;SRP=485.077;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|0:113:101,3,4:101:3930:3,4:121,158:0,-20.8327,-341.634,-21.3406,-333.441,-341.799 0|0:72:53,10,7:53:2083:10,7:405,275:-12.972,0,-156.848,-12.2765,-143.193,-169.993 0|0:82:68,4,5:68:2681:4,5:156,195:0,-9.41684,-224.625,-9.33485,-214.674,-224.215 dDocent_Contig_12174 7 . A G 160.89 . AB=0.230769;ABP=11.1951;AC=3;AF=0.5;AN=6;AO=7;CIGAR=1X;DP=24;DPB=24;DPRA=1.21429;EPP=18.2106;EPPR=39.9253;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=232;QR=642;RO=17;RPL=0;RPP=18.2106;RPPR=39.9253;RPR=7;RUN=1;SAF=7;SAP=18.2106;SAR=0;SRF=17;SRP=39.9253;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:13:10,3:10:379:3:90:-4.48276,0,-30.5482 1/1:4:0,4:0:0:4:142:-13.1285,-1.20412,0 0/0:7:7,0:7:263:0:0:0,-2.10721,-24.0284 dDocent_Contig_12175 10 . C T 692.685 . AB=0.130435;ABP=30.2953;AC=2;AF=0.333333;AN=6;AO=3;CIGAR=1X3M1X1M2I3M;DP=68;DPB=72.4444;DPRA=0;EPP=9.52472;EPPR=76.8404;GTI=0;LEN=1;MEANALT=2;MQM=60;MQMR=60;NS=3;NUMALT=4;ODDS=6.93889e-18;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=114;QR=1361;RO=34;RPL=0;RPP=9.52472;RPPR=76.8404;RPR=3;RUN=1;SAF=3;SAP=9.52472;SAR=0;SRF=34;SRP=76.8404;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|0:35:23,0,0,2,10:23:917:0,0,2,10:0,0,82,396:-25.6534,-32.577,-108.096,-32.577,-108.096,-108.096,-25.8066,-101.327,-101.327,-100.725,0,-75.5083,-75.5083,-68.7393,-72.498 1|0:10:0,3,0,3,4:0:0:3,0,3,4:121,0,118,162:-23.3402,-13.365,-12.4619,-23.3402,-13.365,-23.3402,-13.6379,-3.66434,-13.6379,-12.7348,-9.97922,0,-9.97922,-0.278615,-8.7751 0|1:23:11,9,3,0,0:11:444:9,3,0,0:353,114,0,0:-25.7276,0,-33.9111,-19.6947,-27.2781,-55.3997,-29.039,-36.6204,-56.3028,-65.6477,-29.039,-36.6204,-56.3028,-65.6477,-65.6477 dDocent_Contig_12176 119 . A T 434.852 . AB=0.362069;ABP=12.5947;AC=2;AF=0.333333;AN=6;AO=21;CIGAR=1X;DP=62;DPB=62;DPRA=7.25;EPP=48.6112;EPPR=92.0407;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=709;QR=1380;RO=41;RPL=0;RPP=48.6112;RPPR=92.0407;RPR=21;RUN=1;SAF=0;SAP=48.6112;SAR=21;SRF=0;SRP=92.0407;SRR=41;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:35:29,6:29:983:6:208:-8.52359,0,-78.234 0/0:4:4,0:4:119:0:0:0,-1.20412,-11.003 0/1:23:8,15:8:278:15:501:-38.4844,0,-18.4329 dDocent_Contig_12178 21 . C T 108.943 . AB=0.357143;ABP=5.49198;AC=2;AF=0.333333;AN=6;AO=6;CIGAR=1X7M2X;DP=54;DPB=54;DPRA=0;EPP=16.0391;EPPR=98.5551;GTI=0;LEN=1;MEANALT=1.66667;MQM=51;MQMR=60;NS=3;NUMALT=2;ODDS=3.46945e-18;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=238;QR=1703;RO=44;RPL=0;RPP=16.0391;RPPR=98.5551;RPR=6;RUN=1;SAF=6;SAP=16.0391;SAR=0;SRF=44;SRP=98.5551;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|0:40:35,3,1:35:1360:3,1:117,39:0,-1.00896,-111.865,-7.35045,-109.583,-118.807 0|1:7:3,0,4:3:114:0,4:0,161:-12.6549,-13.558,-22.8989,0,-9.72889,-8.52477 0|1:7:6,0,1:6:229:0,1:0,38:-1.67155,-3.47773,-22.2678,0,-19.1684,-18.8674 dDocent_Contig_12181 98 . N A 236.351 . AB=0;ABP=0;AC=6;AF=1;AN=6;AO=7;CIGAR=1X;DP=7;DPB=7;DPRA=0;EPP=18.2106;EPPR=0;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=0;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=246;QR=0;RO=0;RPL=7;RPP=18.2106;RPPR=0;RPR=0;RUN=1;SAF=7;SAP=18.2106;SAR=0;SRF=0;SRP=0;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 1/1:3:0,3:0:0:3:107:-9.98217,-0.90309,0 1/1:1:0,1:0:0:1:31:-3.09945,-0.30103,0 1/1:3:0,3:0:0:3:108:-10.0752,-0.90309,0 dDocent_Contig_12182 10 . C T 33.1964 . AB=0.142857;ABP=26.2761;AC=1;AF=0.166667;AN=6;AO=3;CIGAR=1X;DP=54;DPB=54;DPRA=1.27273;EPP=9.52472;EPPR=113.755;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=123;QR=2061;RO=51;RPL=0;RPP=9.52472;RPPR=113.755;RPR=3;RUN=1;SAF=3;SAP=9.52472;SAR=0;SRF=51;SRP=113.755;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:30:30,0:30:1211:0:0:0,-9.0309,-109.256 0/0:3:3,0:3:123:0:0:0,-0.90309,-11.4648 0/1:21:18,3:18:727:3:123:-5.14316,0,-59.4337 dDocent_Contig_12183 94 . G A 318.544 . AB=0.5;ABP=3.0103;AC=5;AF=0.833333;AN=6;AO=9;CIGAR=1X3M1X;DP=11;DPB=11;DPRA=0;EPP=22.5536;EPPR=0;GTI=0;LEN=1;MEANALT=1.33333;MQM=60;MQMR=0;NS=3;NUMALT=2;ODDS=0;PAIRED=1;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=305;QR=0;RO=0;RPL=9;RPP=22.5536;RPPR=0;RPR=0;RUN=1;SAF=9;SAP=22.5536;SAR=0;SRF=0;SRP=0;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 1|1:5:0,5,0:0:0:5,0:167,0:-15.3595,-1.50515,0,-15.3595,-1.50515,-15.3595 1|1:2:0,2,0:0:0:2,0:69,0:-6.55266,-0.60206,0,-6.55266,-0.60206,-6.55266 1|0:4:0,2,2:0:0:2,2:69,68:-11.464,-5.85582,-5.25376,-5.9506,0,-5.34854 dDocent_Contig_12184 7 . A C 1822.23 . AB=0.488889;ABP=3.15506;AC=3;AF=0.5;AN=6;AO=66;CIGAR=1X;DP=135;DPB=135;DPRA=0;EPP=146.327;EPPR=152.842;GTI=0;LEN=1;MEANALT=1;MQM=59.8788;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=2527;QR=2638;RO=69;RPL=0;RPP=146.327;RPPR=152.842;RPR=66;RUN=1;SAF=66;SAP=146.327;SAR=0;SRF=69;SRP=152.842;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:96:44,52:44:1691:52:1992:-150.621,0,-123.554 0/1:18:10,8:10:379:8:310:-22.845,0,-29.0448 0/1:21:15,6:15:568:6:225:-14.2791,0,-45.1376 dDocent_Contig_12185 173 . A C 43.8502 . AB=0.3;ABP=6.48466;AC=1;AF=0.166667;AN=6;AO=3;CIGAR=1X;DP=26;DPB=26;DPRA=1.25;EPP=9.52472;EPPR=52.9542;GTI=0;LEN=1;MEANALT=1;MQM=46;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=0.666667;PAIREDR=0.913043;PAO=0;PQA=0;PQR=0;PRO=0;QA=114;QR=926;RO=23;RPL=3;RPP=9.52472;RPPR=52.9542;RPR=0;RUN=1;SAF=0;SAP=9.52472;SAR=3;SRF=0;SRP=52.9542;SRR=23;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:15:15,0:15:599:0:0:0,-4.51545,-54.2454 0/0:1:1,0:1:41:0:0:0,-0.30103,-4.09457 0/1:10:7,3:7:286:3:114:-6.20817,0,-23.1045 dDocent_Contig_12186 24 . C G 476.873 . AB=0.465116;ABP=3.46479;AC=3;AF=0.5;AN=6;AO=20;CIGAR=1M4D4M1X;DP=43;DPB=35;DPRA=0;EPP=46.4397;EPPR=52.9542;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=723;QR=901;RO=23;RPL=0;RPP=46.4397;RPPR=52.9542;RPR=20;RUN=1;SAF=20;SAP=46.4397;SAR=0;SRF=23;SRP=52.9542;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|1:17:7,10:7:276:10:355:-27.1666,0,-20.0915 0|1:2:1,1:1:38:1:40:-3.39362,0,-3.19521 0|1:24:15,9:15:587:9:328:-22.6352,0,-45.9459 dDocent_Contig_12187 19 . C A 187.844 . AB=0.1;ABP=30.8051;AC=2;AF=0.5;AN=4;AO=2;CIGAR=4M1I1M1X4M;DP=30;DPB=31.1;DPRA=0;EPP=7.35324;EPPR=44.2683;GTI=0;LEN=1;MEANALT=2;MQM=60;MQMR=60;NS=2;NUMALT=2;ODDS=0;PAIRED=1;PAIREDR=0.894737;PAO=0;PQA=0;PQR=0;PRO=0;QA=81;QR=757;RO=19;RPL=0;RPP=7.35324;RPPR=44.2683;RPR=2;RUN=1;SAF=2;SAP=7.35324;SAR=0;SRF=19;SRP=44.2683;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|1:20:12,6,2:12:478:6,2:236,81:-15.7921,0,-37.5488,-12.7224,-32.6749,-51.4843 .:.:.:.:.:.:.:. 0|1:10:7,3,0:7:279:3,0:104,0:-6.69123,0,-22.4714,-8.79844,-23.3745,-31.811 dDocent_Contig_12188 27 . G A 113.877 . AB=0.26087;ABP=14.4341;AC=2;AF=0.333333;AN=6;AO=6;CIGAR=1X;DP=31;DPB=31;DPRA=1.4375;EPP=16.0391;EPPR=57.2971;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=1.73472e-18;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=234;QR=1003;RO=25;RPL=0;RPP=16.0391;RPPR=57.2971;RPR=6;RUN=1;SAF=6;SAP=16.0391;SAR=0;SRF=25;SRP=57.2971;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:3:1,2:1:40:2:81:-6.78264,0,-3.09259 0/0:8:8,0:8:319:0:0:0,-2.40824,-29.0743 0/1:20:16,4:16:644:4:153:-8.11642,0,-52.2713 dDocent_Contig_12189 50 . A G 141.621 . AB=0.4;ABP=3.87889;AC=3;AF=0.5;AN=6;AO=5;CIGAR=1X;DP=27;DPB=27;DPRA=0.34375;EPP=13.8677;EPPR=50.7827;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=0;PAIREDR=0.954545;PAO=0;PQA=0;PQR=0;PRO=0;QA=199;QR=889;RO=22;RPL=5;RPP=13.8677;RPPR=50.7827;RPR=0;RUN=1;SAF=5;SAP=13.8677;SAR=0;SRF=22;SRP=50.7827;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:16:16,0:16:644:0:0:0,-4.81648,-58.2905 1/1:1:0,1:0:0:1:41:-4.09457,-0.30103,0 0/1:10:6,4:6:245:4:158:-11.5897,0,-19.4192 dDocent_Contig_12190 107 . N A 198.028 . AB=0;ABP=0;AC=4;AF=1;AN=4;AO=6;CIGAR=1X;DP=6;DPB=6;DPRA=0;EPP=16.0391;EPPR=0;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=0;NS=2;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=209;QR=0;RO=0;RPL=0;RPP=16.0391;RPPR=0;RPR=6;RUN=1;SAF=0;SAP=16.0391;SAR=6;SRF=0;SRP=0;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 1/1:5:0,5:0:0:5:174:-16.002,-1.50515,0 ./.:.:.:.:.:.:.:. 1/1:1:0,1:0:0:1:35:-3.49863,-0.30103,0 dDocent_Contig_12191 9 . T A 101.83 . AB=0.0793651;ABP=99.8304;AC=2;AF=0.333334;AN=6;AO=5;CIGAR=1X3M;DP=63;DPB=63;DPRA=0;EPP=13.8677;EPPR=102.898;GTI=0;LEN=1;MEANALT=2.66667;MQM=60;MQMR=60;NS=3;NUMALT=3;ODDS=6.93889e-18;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=193;QR=1765;RO=46;RPL=0;RPP=13.8677;RPPR=102.898;RPR=5;RUN=1;SAF=5;SAP=13.8677;SAR=0;SRF=46;SRP=102.898;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|0:46:36,2,2,5:36:1373:2,2,5:79,78,199:-5.54795,-9.88456,-121.891,-9.975,-116.081,-121.98,0,-106.107,-106.197,-111.103 0|1:11:6,2,1,2:6:234:2,1,2:79,39,74:-4.70209,0,-18.6415,-3.30089,-16.0371,-22.239,-0.465305,-13.1957,-16.492,-19.0957 0|1:6:4,0,2,0:4:158:0,2,0:0,76,0:-5.40849,-6.61261,-19.6245,0,-13.3965,-12.7945,-6.61261,-19.6245,-13.3965,-19.6245 dDocent_Contig_12192 85 . C T 51.9163 . AB=0.375;ABP=4.09604;AC=1;AF=0.166667;AN=6;AO=3;CIGAR=1X;DP=38;DPB=38;DPRA=0.533333;EPP=9.52472;EPPR=79.0118;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=101;QR=1196;RO=35;RPL=3;RPP=9.52472;RPPR=79.0118;RPR=0;RUN=1;SAF=3;SAP=9.52472;SAR=0;SRF=35;SRP=79.0118;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:17:17,0:17:580:0:0:0,-5.11751,-52.5221 0/1:8:5,3:5:171:3:101:-7.01553,0,-13.3184 0/0:13:13,0:13:445:0:0:0,-3.91339,-40.3783 dDocent_Contig_12194 9 . T A 94.6529 . AB=0.333333;ABP=5.9056;AC=1;AF=0.166667;AN=6;AO=4;CIGAR=1X2M1X;DP=24;DPB=24;DPRA=2;EPP=11.6962;EPPR=46.4397;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=158;QR=775;RO=20;RPL=0;RPP=11.6962;RPPR=46.4397;RPR=4;RUN=1;SAF=4;SAP=11.6962;SAR=0;SRF=20;SRP=46.4397;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|1:12:8,4:8:309:4:158:-10.9881,0,-24.5593 0|0:6:6,0:6:227:0:0:0,-1.80618,-20.7909 0|0:6:6,0:6:239:0:0:0,-1.80618,-21.8854 dDocent_Contig_12195 51 . T A 329.649 . AB=0.35;ABP=10.8276;AC=3;AF=0.5;AN=6;AO=14;CIGAR=1X;DP=40;DPB=40;DPRA=0;EPP=33.4109;EPPR=59.4686;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=549;QR=1017;RO=26;RPL=14;RPP=33.4109;RPPR=59.4686;RPR=0;RUN=1;SAF=14;SAP=33.4109;SAR=0;SRF=26;SRP=59.4686;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:19:10,9:10:379:9:358:-26.8626,0,-28.7327 0/1:9:6,3:6:238:3:109:-7.45691,0,-19.0845 0/1:12:10,2:10:400:2:82:-4.16732,0,-32.7467 dDocent_Contig_12197 107 . N A 131.295 . AB=0;ABP=0;AC=2;AF=1;AN=2;AO=4;CIGAR=1X;DP=4;DPB=4;DPRA=0;EPP=11.6962;EPPR=0;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=0;NS=1;NUMALT=1;ODDS=7.37776;PAIRED=1;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=142;QR=0;RO=0;RPL=0;RPP=11.6962;RPPR=0;RPR=4;RUN=1;SAF=0;SAP=11.6962;SAR=4;SRF=0;SRP=0;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL ./.:.:.:.:.:.:.:. ./.:.:.:.:.:.:.:. 1/1:4:0,4:0:0:4:142:-13.1293,-1.20412,0 dDocent_Contig_12198 134 . G A 69.1392 . AB=0.192308;ABP=24.391;AC=2;AF=0.333333;AN=6;AO=5;CIGAR=1X;DP=35;DPB=35;DPRA=1.44444;EPP=13.8677;EPPR=68.1545;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=55.7667;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=0.9;PAO=0;PQA=0;PQR=0;PRO=0;QA=194;QR=1033;RO=30;RPL=0;RPP=13.8677;RPPR=68.1545;RPR=5;RUN=1;SAF=0;SAP=13.8677;SAR=5;SRF=0;SRP=68.1545;SRR=30;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:9:9,0:9:311:0:0:0,-2.70927,-25.1716 0/1:11:8,3:8:278:3:121:-7.96866,0,-22.0466 0/1:15:13,2:13:444:2:73:-2.41585,0,-33.9537 dDocent_Contig_12199 9 . T A 7214.36 . AB=0.0517241;ABP=1217.84;AC=0;AF=0;AN=6;AO=36;CIGAR=2M1X2M;DP=696;DPB=696.2;DPRA=0;EPP=81.1833;EPPR=293.988;GTI=0;LEN=1;MEANALT=19;MQM=52.5278;MQMR=58.9776;NS=3;NUMALT=4;ODDS=0;PAIRED=0;PAIREDR=0.11194;PAO=0;PQA=0;PQR=0;PRO=0;QA=1384;QR=5136;RO=134;RPL=0;RPP=81.1833;RPPR=293.988;RPR=36;RUN=1;SAF=36;SAP=81.1833;SAR=0;SRF=134;SRP=293.988;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|0:205:52,0,13,78,12:52:2004:0,13,78,12:0,499,2360,467:-171.87,-187.524,-352.02,-146.567,-311.066,-307.153,0,-164.492,-123.539,-141.012,-149.813,-314.311,-273.357,-126.784,-310.699 0|0:302:38,33,8,166,10:38:1452:33,8,166,10:1168,295,5324,370:-415.25,-334.703,-443.892,-402.593,-429.731,-519.308,0,-27.1456,-95.0287,-69.1526,-396.643,-423.781,-491.671,-89.0791,-512.756 0|0:189:44,9,5,59,14:44:1680:9,5,59,14:340,195,1908,547:-139.839,-125.504,-260.234,-137.074,-246.934,-273.008,0,-109.858,-121.428,-119.676,-108.479,-218.34,-229.91,-92.8341,-241.705 dDocent_Contig_12200 22 . T C 100.935 . AB=0.150943;ABP=59.0998;AC=2;AF=0.333333;AN=6;AO=8;CIGAR=1X;DP=61;DPB=61;DPRA=3.3125;EPP=20.3821;EPPR=118.098;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=320;QR=2101;RO=53;RPL=0;RPP=20.3821;RPPR=118.098;RPR=8;RUN=1;SAF=8;SAP=20.3821;SAR=0;SRF=53;SRP=118.098;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:38:34,4:34:1346:4:162:-3.52761,0,-109.957 0/0:8:8,0:8:321:0:0:0,-2.40824,-29.257 0/1:15:11,4:11:434:4:158:-10.0845,0,-34.8969 dDocent_Contig_12201 114 . A G 3141.88 . AB=0.690647;ABP=90.7753;AC=3;AF=0.5;AN=6;AO=192;CIGAR=1X;DP=278;DPB=278;DPRA=0;EPP=419.933;EPPR=189.757;GTI=0;LEN=1;MEANALT=1;MQM=24.3542;MQMR=51.9651;NS=3;NUMALT=1;ODDS=1.38778e-17;PAIRED=0;PAIREDR=0.744186;PAO=0;PQA=0;PQR=0;PRO=0;QA=6502;QR=2827;RO=86;RPL=0;RPP=419.933;RPPR=189.757;RPR=192;RUN=1;SAF=0;SAP=419.933;SAR=192;SRF=0;SRP=189.757;SRR=86;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:149:55,94:55:1836:94:3166:-164.167,0,-114.867 0/1:82:19,63:19:585:63:2137:-95.5932,0,-24.3161 0/1:47:12,35:12:406:35:1199:-59.9507,0,-16.3503 dDocent_Contig_12202 181 . C A 54.591 . AB=0.230769;ABP=11.1951;AC=1;AF=0.25;AN=4;AO=3;CIGAR=1X;DP=59;DPB=59;DPRA=0.282609;EPP=9.52472;EPPR=124.613;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=2;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=122;QR=2193;RO=56;RPL=3;RPP=9.52472;RPPR=124.613;RPR=0;RUN=1;SAF=0;SAP=9.52472;SAR=3;SRF=0;SRP=124.613;SRR=56;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:46:46,0:46:1785:0:0:0,-13.8474,-160.863 ./.:.:.:.:.:.:.:. 0/1:13:10,3:10:408:3:122:-7.4591,0,-33.1672 dDocent_Contig_12204 43 . A G 61.4735 . AB=0.173913;ABP=24.253;AC=2;AF=0.333333;AN=6;AO=4;CIGAR=1X;DP=26;DPB=26;DPRA=3.83333;EPP=11.6962;EPPR=50.7827;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=159;QR=877;RO=22;RPL=0;RPP=11.6962;RPPR=50.7827;RPR=4;RUN=1;SAF=4;SAP=11.6962;SAR=0;SRF=22;SRP=50.7827;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:12:11,1:11:440:1:38:-0.184909,0,-36.3432 0/0:3:3,0:3:119:0:0:0,-0.90309,-11.095 0/1:11:8,3:8:318:3:121:-7.96887,0,-25.6744 dDocent_Contig_12206 98 . N G 256.562 . AB=0;ABP=0;AC=6;AF=1;AN=6;AO=8;CIGAR=1X;DP=8;DPB=8;DPRA=0;EPP=20.3821;EPPR=0;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=0;NS=3;NUMALT=1;ODDS=1.69407e-21;PAIRED=0.25;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=269;QR=0;RO=0;RPL=8;RPP=20.3821;RPPR=0;RPR=0;RUN=1;SAF=8;SAP=20.3821;SAR=0;SRF=0;SRP=0;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 1/1:4:0,4:0:0:4:137:-12.6682,-1.20412,0 1/1:3:0,3:0:0:3:103:-9.61002,-0.90309,0 1/1:1:0,1:0:0:1:29:-2.89966,-0.30103,0 dDocent_Contig_12207 23 . C T 112.785 . AB=0.173913;ABP=45.4956;AC=3;AF=0.5;AN=6;AO=8;CIGAR=1X;DP=46;DPB=46;DPRA=0;EPP=20.3821;EPPR=85.5263;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=327;QR=1514;RO=38;RPL=0;RPP=20.3821;RPPR=85.5263;RPR=8;RUN=1;SAF=8;SAP=20.3821;SAR=0;SRF=38;SRP=85.5263;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:29:26,3:26:1025:3:122:-2.64262,0,-83.8117 0/1:5:3,2:3:121:2:82:-6.27453,0,-9.77505 0/1:12:9,3:9:368:3:123:-7.85243,0,-29.873 dDocent_Contig_12209 107 . N A 66.4848 . AB=0;ABP=0;AC=2;AF=1;AN=2;AO=2;CIGAR=1X;DP=2;DPB=2;DPRA=0;EPP=7.35324;EPPR=0;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=0;NS=1;NUMALT=1;ODDS=5.99146;PAIRED=1;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=70;QR=0;RO=0;RPL=0;RPP=7.35324;RPPR=0;RPR=2;RUN=1;SAF=0;SAP=7.35324;SAR=2;SRF=0;SRP=0;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL ./.:.:.:.:.:.:.:. ./.:.:.:.:.:.:.:. 1/1:2:0,2:0:0:2:70:-6.6474,-0.60206,0 dDocent_Contig_12210 7 . A G 140.392 . AB=0.0833333;ABP=93.4883;AC=1;AF=0.166667;AN=6;AO=6;CIGAR=1X1M;DP=88;DPB=88;DPRA=0;EPP=16.0391;EPPR=135.604;GTI=0;LEN=1;MEANALT=3;MQM=60;MQMR=59.4769;NS=3;NUMALT=3;ODDS=0;PAIRED=1;PAIREDR=0.938462;PAO=0;PQA=0;PQR=0;PRO=0;QA=211;QR=2499;RO=65;RPL=0;RPP=16.0391;RPPR=144.156;RPR=6;RUN=1;SAF=6;SAP=16.0391;SAR=0;SRF=64;SRP=135.604;SRR=1;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|0:42:32,3,6,1:32:1238:3,6,1:113,233,39:-9.51791,-9.89462,-110.684,0,-92.4409,-99.8937,-15.9444,-108.381,-98.4939,-117.339 0|1:18:9,3,2,4:9:346:3,2,4:101,74,133:-8.04379,-2.94636,-30.1791,-4.69022,-25.028,-32.2319,0,-20.3373,-22.0852,-26.9352 0|0:28:24,1,2,1:24:915:1,2,1:29,78,39:0,-4.94098,-79.6924,-0.788041,-73.581,-75.2841,-4.01053,-76.7872,-72.6798,-78.7915 dDocent_Contig_12211 66 . T C 607.472 . AB=0.52381;ABP=3.21711;AC=3;AF=0.5;AN=6;AO=22;CIGAR=1X;DP=42;DPB=42;DPRA=0;EPP=50.7827;EPPR=46.4397;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=3.46945e-18;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=865;QR=779;RO=20;RPL=22;RPP=50.7827;RPPR=46.4397;RPR=0;RUN=1;SAF=22;SAP=50.7827;SAR=0;SRF=20;SRP=46.4397;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:26:8,18:8:325:18:716:-56.9403,0,-21.7929 0/1:9:7,2:7:270:2:75:-4.41083,0,-21.951 0/1:7:5,2:5:184:2:74:-4.91822,0,-14.8099 dDocent_Contig_12212 8 . T A 3595.4 . AB=0.0651341;ABP=860.434;AC=0;AF=0;AN=6;AO=34;CIGAR=3X3M1X1M1X3M1X2M;DP=522;DPB=522.4;DPRA=0;EPP=76.8404;EPPR=107.241;GTI=0;LEN=1;MEANALT=23.3333;MQM=60;MQMR=60;NS=3;NUMALT=7;ODDS=0;PAIRED=0.882353;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=1329;QR=1884;RO=48;RPL=0;RPP=76.8404;RPPR=107.241;RPR=34;RUN=1;SAF=34;SAP=76.8404;SAR=0;SRF=48;SRP=107.241;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|0:288:34,49,9,26,0,15,43,39:34:1337:49,9,26,0,15,43,39:1931,348,1032,0,596,1726,1553:-179.734,-31.3415,-126.57,-161.386,-112.738,-268.655,-105.033,-56.3849,-186.429,-207.185,-189.969,-141.32,-271.364,-215.012,-299.947,-140.901,-92.2533,-222.297,-165.945,-250.88,-246.365,-48.6483,0,-130.044,-73.6918,-158.627,-109.56,-145.683,-62.1021,-13.4538,-143.498,-87.1456,-172.081,-123.014,-30.7607,-160.341 0|0:64:12,2,6,5,4,2,8,12:12:467:2,6,5,4,2,8,12:72,236,199,163,79,313,474:-35.3901,-33.1301,-70.906,-19.5884,-52.0942,-56.1605,-22.6154,-55.1213,-41.5798,-59.4887,-25.5572,-58.0632,-44.5217,-47.5488,-62.7316,-32.5012,-65.0068,-51.4654,-54.4926,-57.4345,-70.2773,-13.2673,-45.7732,-32.2316,-35.2587,-38.2005,-45.1444,-49.2374,0,-32.5064,-18.9645,-21.9916,-24.9335,-31.8775,-12.6434,-34.7665 0|0:170:2,13,19,16,0,18,24,24:2:80:13,19,16,0,18,24,24:489,745,644,0,706,961,955:-149.939,-110.488,-113.165,-89.275,-55.8124,-90.1458,-97.4673,-64.0045,-42.7911,-99.2411,-150.541,-117.079,-95.8653,-104.058,-157.132,-92.486,-59.0233,-37.8099,-46.002,-99.0763,-93.6577,-71.7002,-38.2375,-17.0239,-25.216,-78.2905,-20.2349,-71.0658,-72.2513,-38.7886,-17.5751,-25.7672,-78.8416,-20.7861,0,-71.6169 dDocent_Contig_12213 10 . A C 36.5113 . AB=0.101266;ABP=112.106;AC=1;AF=0.166667;AN=6;AO=8;CIGAR=1X;DP=320;DPB=320;DPRA=0.655602;EPP=20.3821;EPPR=673.995;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=321;QR=12333;RO=309;RPL=0;RPP=20.3821;RPPR=673.995;RPR=8;RUN=1;SAF=8;SAP=20.3821;SAR=0;SRF=309;SRP=673.995;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:227:224,0:224:8940:0:0:0,-67.4307,-803.689 0/0:14:14,0:14:546:0:0:0,-4.21442,-49.4813 0/1:79:71,8:71:2847:8:321:-5.47494,0,-232.547 dDocent_Contig_12214 37 . C T 692.938 . AB=0.615385;ABP=7.52028;AC=3;AF=0.5;AN=6;AO=24;CIGAR=1X;DP=39;DPB=39;DPRA=0;EPP=55.1256;EPPR=35.5824;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=948;QR=606;RO=15;RPL=0;RPP=55.1256;RPPR=35.5824;RPR=24;RUN=1;SAF=24;SAP=55.1256;SAR=0;SRF=15;SRP=35.5824;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:12:6,6:6:244:6:240:-18.3637,0,-18.7263 0/1:5:1,4:1:35:4:163:-13.5533,0,-1.99348 0/1:22:8,14:8:327:14:545:-42.7699,0,-23.1774 dDocent_Contig_12215 143 . T G 753.882 . AB=0.210526;ABP=58.3257;AC=2;AF=0.333334;AN=6;AO=16;CIGAR=2M1X2M;DP=76;DPB=70.8;DPRA=0;EPP=37.7539;EPPR=61.6401;GTI=0;LEN=1;MEANALT=2.66667;MQM=60;MQMR=60;NS=3;NUMALT=3;ODDS=1.38778e-17;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=513;QR=854;RO=27;RPL=0;RPP=37.7539;RPPR=61.6401;RPR=16;RUN=1;SAF=0;SAP=37.7539;SAR=16;SRF=0;SRP=61.6401;SRR=27;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|0:46:11,24,3,8:11:353:24,3,8:794,103,237:-60.9154,0,-21.2293,-55.8612,-20.0859,-83.406,-45.3195,-9.54929,-65.3995,-71.3562 0|1:15:6,2,1,6:6:202:2,1,6:68,35,206:-14.9211,-11.2124,-26.9749,-13.8788,-24.7285,-29.9434,0,-10.8474,-13.5146,-14.5575 0|1:15:10,0,3,2:10:299:0,3,2:0,100,70:-5.07377,-8.08407,-31.9495,0,-23.8503,-22.9472,-2.38194,-26.2483,-18.1464,-25.6463 dDocent_Contig_12216 9 . T C 186.559 . AB=0.25;ABP=22.5536;AC=2;AF=0.333333;AN=6;AO=9;CIGAR=1X1M1X;DP=49;DPB=49;DPRA=0;EPP=22.5536;EPPR=79.0118;GTI=0;LEN=1;MEANALT=2;MQM=60;MQMR=60;NS=3;NUMALT=2;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=354;QR=1379;RO=35;RPL=0;RPP=22.5536;RPPR=79.0118;RPR=9;RUN=1;SAF=9;SAP=22.5536;SAR=0;SRF=35;SRP=79.0118;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|1:26:19,5,2:19:750:5,2:194,82:-10.2041,0,-60.1948,-9.14931,-54.9303,-70.2661 0|1:10:4,4,2:4:155:4,2:160,81:-11.9729,0,-11.5183,-6.49622,-6.03748,-18.6219 0|0:13:12,0,1:12:474:0,1:0,40:-0.0822893,-3.69465,-42.695,0,-39.3995,-39.0985 dDocent_Contig_12217 39 . T C 122.561 . AB=0.333333;ABP=6.62942;AC=1;AF=0.25;AN=4;AO=5;CIGAR=1X;DP=21;DPB=21;DPRA=2.5;EPP=13.8677;EPPR=37.7539;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=2;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=201;QR=627;RO=16;RPL=0;RPP=13.8677;RPPR=37.7539;RPR=5;RUN=1;SAF=5;SAP=13.8677;SAR=0;SRF=16;SRP=37.7539;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:15:10,5:10:397:5:201:-13.9551,0,-31.5725 ./.:.:.:.:.:.:.:. 0/0:6:6,0:6:230:0:0:0,-1.80618,-21.0646 dDocent_Contig_12218 8 . T G 37.7521 . AB=0.176471;ABP=18.4661;AC=1;AF=0.166667;AN=6;AO=5;CIGAR=1X;DP=119;DPB=119;DPRA=1.625;EPP=13.8677;EPPR=250.558;GTI=0;LEN=1;MEANALT=1;MQM=57;MQMR=60;NS=3;NUMALT=1;ODDS=3.46945e-18;PAIRED=0;PAIREDR=0.877193;PAO=0;PQA=0;PQR=0;PRO=0;QA=193;QR=4398;RO=114;RPL=0;RPP=13.8677;RPPR=250.558;RPR=5;RUN=1;SAF=5;SAP=13.8677;SAR=0;SRF=114;SRP=250.558;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:74:72,2:72:2775:2:78:0,-14.8792,-242.532 0/0:28:28,0:28:1079:0:0:0,-8.42884,-97.4143 0/1:17:14,3:14:544:3:115:-5.59904,0,-44.1886 dDocent_Contig_12219 10 . A G 318.373 . AB=0.2;ABP=18.6449;AC=4;AF=0.666667;AN=6;AO=11;CIGAR=1X;DP=27;DPB=27;DPRA=0;EPP=26.8965;EPPR=37.7539;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=446;QR=641;RO=16;RPL=0;RPP=26.8965;RPPR=37.7539;RPR=11;RUN=1;SAF=11;SAP=26.8965;SAR=0;SRF=16;SRP=37.7539;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:14:11,3:11:438:3:123:-7.25037,0,-35.5581 1/1:7:0,7:0:0:7:282:-25.7526,-2.10721,0 0/1:6:5,1:5:203:1:41:-2.28839,0,-16.8467 dDocent_Contig_12220 8 . T G 70.292 . AB=0.222222;ABP=15.074;AC=1;AF=0.166667;AN=6;AO=4;CIGAR=1X4M;DP=68;DPB=68;DPRA=0.72;EPP=3.0103;EPPR=137.642;GTI=0;LEN=1;MEANALT=2;MQM=60;MQMR=60;NS=3;NUMALT=2;ODDS=0;PAIRED=0;PAIREDR=0.951613;PAO=0;PQA=0;PQR=0;PRO=0;QA=152;QR=2370;RO=62;RPL=0;RPP=11.6962;RPPR=137.642;RPR=4;RUN=1;SAF=2;SAP=3.0103;SAR=2;SRF=62;SRP=137.642;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|0:38:38,0,0:38:1466:0,0:0,0:0,-11.4391,-132.211,-11.4391,-132.211,-132.211 0|1:18:12,2,4:12:449:2,4:76,152:-8.8531,-6.23535,-42.3955,0,-30.5307,-35.5575 0|0:12:12,0,0:12:455:0,0:0,0:0,-3.61236,-41.2982,-3.61236,-41.2982,-41.2982 dDocent_Contig_12221 19 . G A 253.996 . AB=0.473684;ABP=3.12459;AC=1;AF=0.166667;AN=6;AO=9;CIGAR=2X;DP=53;DPB=53;DPRA=1.11765;EPP=22.5536;EPPR=96.3836;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=362;QR=1678;RO=43;RPL=0;RPP=22.5536;RPPR=96.3836;RPR=9;RUN=1;SAF=9;SAP=22.5536;SAR=0;SRF=43;SRP=96.3836;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|0:25:24,0:24:932:0:0:0,-7.22472,-84.0817 0|0:9:9,0:9:360:0:0:0,-2.70927,-32.7636 0|1:19:10,9:10:386:9:362:-27.2235,0,-29.3767 dDocent_Contig_12222 8 . T A 389.745 . AB=0.183206;ABP=117.203;AC=3;AF=0.5;AN=6;AO=24;CIGAR=1X;DP=131;DPB=131;DPRA=0;EPP=55.1256;EPPR=235.358;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=920;QR=4073;RO=107;RPL=0;RPP=55.1256;RPPR=235.358;RPR=24;RUN=1;SAF=24;SAP=55.1256;SAR=0;SRF=107;SRP=235.358;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:69:56,13:56:2147:13:497:-24.3067,0,-172.686 0/1:24:17,7:17:640:7:273:-17.7133,0,-50.7078 0/1:38:34,4:34:1286:4:150:-2.42623,0,-104.591 dDocent_Contig_12224 9 . T A 2289.51 . AB=0.787234;ABP=70.3721;AC=3;AF=0.5;AN=6;AO=74;CIGAR=1X1M1X;DP=94;DPB=94;DPRA=0;EPP=163.699;EPPR=46.4397;GTI=0;LEN=1;MEANALT=1;MQM=58.8108;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=0.594595;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=2908;QR=776;RO=20;RPL=0;RPP=163.699;RPPR=46.4397;RPR=74;RUN=1;SAF=74;SAP=163.699;SAR=0;SRF=20;SRP=46.4397;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|1:69:10,59:10:382:59:2315:-187.605,0,-13.9601 0|1:7:1,6:1:39:6:237:-19.5924,0,-1.78935 0|1:18:9,9:9:355:9:356:-26.9846,0,-26.8936 dDocent_Contig_12225 12 . G A 679.627 . AB=0.202703;ABP=59.8207;AC=0;AF=0;AN=6;AO=15;CIGAR=1X3M1X;DP=82;DPB=82;DPRA=0;EPP=35.5824;EPPR=92.0407;GTI=0;LEN=1;MEANALT=2;MQM=60;MQMR=60;NS=3;NUMALT=2;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=583;QR=1590;RO=41;RPL=0;RPP=35.5824;RPPR=92.0407;RPR=15;RUN=1;SAF=15;SAP=35.5824;SAR=0;SRF=41;SRP=92.0407;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|0:50:25,10,15:25:977:10,15:384,611:-42.8934,-18.9147,-96.2151,0,-48.814,-75.8103 0|0:8:2,0,6:2:80:0,6:0,222:-17.9222,-18.5243,-25.1219,0,-6.98973,-5.18355 0|0:24:14,5,5:14:533:5,5:199,204:-12.6219,-0.455094,-42.6427,0,-27.3093,-42.1948 dDocent_Contig_12226 9 . T G 1561.62 . AB=0.522523;ABP=3.49937;AC=3;AF=0.5;AN=6;AO=58;CIGAR=1X;DP=111;DPB=111;DPRA=0;EPP=128.956;EPPR=118.098;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=0.320755;PAO=0;PQA=0;PQR=0;PRO=0;QA=2157;QR=2031;RO=53;RPL=0;RPP=128.956;RPPR=118.098;RPR=58;RUN=1;SAF=58;SAP=128.956;SAR=0;SRF=53;SRP=118.098;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:59:26,33:26:999:33:1239:-94.0435,0,-72.4598 0/1:22:10,12:10:389:12:422:-31.6873,0,-28.7457 0/1:30:17,13:17:643:13:496:-35.9545,0,-49.172 dDocent_Contig_12227 35 . T C 923.175 . AB=0.5;ABP=3.0103;AC=3;AF=0.5;AN=6;AO=32;CIGAR=2X;DP=64;DPB=64;DPRA=0;EPP=72.4974;EPPR=72.4974;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=1289;QR=1089;RO=32;RPL=0;RPP=72.4974;RPPR=72.4974;RPR=32;RUN=1;SAF=32;SAP=72.4974;SAR=0;SRF=0;SRP=72.4974;SRR=32;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|1:38:19,19:19:650:19:763:-57.5523,0,-47.3828 0|1:2:1,1:1:34:1:40:-3.39362,0,-2.79685 0|1:24:12,12:12:405:12:486:-36.8663,0,-29.5507 dDocent_Contig_12229 9 . T C 577.472 . AB=0.243243;ABP=66.5699;AC=3;AF=0.5;AN=6;AO=27;CIGAR=1X;DP=111;DPB=111;DPRA=0;EPP=61.6401;EPPR=185.414;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=1042;QR=3228;RO=84;RPL=0;RPP=61.6401;RPPR=185.414;RPR=27;RUN=1;SAF=27;SAP=61.6401;SAR=0;SRF=84;SRP=185.414;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:32:17,15:17:654:15:582:-43.0901,0,-49.5636 0/1:55:45,10:45:1740:10:382:-18.1778,0,-140.299 0/1:24:22,2:22:834:2:78:-0.178753,0,-68.1544 dDocent_Contig_12230 15 . A G 2355.52 . AB=0.0255591;ABP=614.97;AC=0;AF=0;AN=6;AO=8;CIGAR=1X2M2X1M1X5M1X1M1X2M2X1M2X;DP=313;DPB=304.136;DPRA=0;EPP=20.3821;EPPR=61.6401;GTI=0;LEN=1;MEANALT=22.3333;MQM=55;MQMR=60;NS=3;NUMALT=9;ODDS=1.11022e-16;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=319;QR=1071;RO=27;RPL=0;RPP=20.3821;RPPR=61.6401;RPR=8;RUN=1;SAF=8;SAP=20.3821;SAR=0;SRF=27;SRP=61.6401;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|0:194:9,4,4,10,3,35,17,32,12,11:9:356:4,4,10,3,35,17,32,12,11:161,161,397,118,1346,638,1206,441,438:-176.867,-166.307,-194.402,-166.342,-182.372,-194.437,-146.894,-162.924,-162.959,-173.183,-169.87,-185.9,-185.935,-166.487,-198.267,-69.5129,-85.5426,-85.5778,-66.1297,-89.106,-88.2763,-127.326,-143.355,-143.391,-123.943,-146.919,-46.5617,-151.508,-80.7639,-96.7936,-96.8288,-77.3808,-100.357,0,-57.8128,-100.43,-143.533,-159.563,-159.598,-140.15,-163.126,-62.7694,-120.582,-74.0204,-169.22,-143.509,-159.539,-159.574,-140.126,-163.102,-62.7445,-120.557,-73.9956,-136.765,-169.497 0|0:38:4,2,3,0,7,2,0,7,1,2:4:158:2,3,0,7,2,0,7,1,2:78,118,0,271,80,0,275,40,64:-30.6731,-25.4653,-37.8663,-22.1912,-28.7824,-34.2912,-31.8772,-38.4683,-35.1943,-44.8801,-9.61718,-16.2085,-12.9344,-22.6204,-20.5132,-25.2862,-31.8774,-28.6033,-38.2892,-16.0293,-37.6872,-31.8772,-38.4683,-35.1943,-44.8801,-22.6204,-38.2892,-44.8801,-9.25684,-15.8483,-12.5741,-22.2602,0,-15.669,-22.2602,-20.153,-28.5817,-35.1729,-31.8988,-41.5847,-19.3248,-34.9937,-41.5847,-18.9646,-41.2837,-26.7283,-33.3193,-30.0453,-39.7308,-17.472,-33.1401,-39.7308,-17.1117,-36.4355,-39.1288 0|0:81:14,3,1,4,3,10,6,12,3,2:14:557:3,1,4,3,10,6,12,3,2:118,40,163,119,399,221,460,111,76:-33.5341,-28.0422,-73.0041,-34.4616,-70.6203,-80.0255,-24.3001,-60.459,-66.8784,-68.9612,-27.9522,-64.1109,-70.5303,-60.369,-72.9141,-4.88538,-41.0444,-47.4638,-37.3024,-40.9544,-47.7405,-19.6822,-55.8406,-62.2599,-52.0986,-55.7506,-32.6843,-63.7406,0,-36.1586,-42.5779,-32.4166,-36.0686,-13.0022,-27.7986,-42.2525,-28.6702,-64.8287,-71.2481,-61.0868,-64.7387,-41.6723,-56.4684,-36.7865,-73.6319,-31.5171,-67.6757,-74.095,-63.9338,-67.5857,-44.5192,-59.3153,-39.6334,-68.3035,-76.7799 dDocent_Contig_12231 27 . G T 113.217 . AB=0.222222;ABP=21.1059;AC=1;AF=0.166667;AN=6;AO=6;CIGAR=1X;DP=50;DPB=50;DPRA=2.34783;EPP=16.0391;EPPR=98.5551;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=1.73472e-18;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=229;QR=1741;RO=44;RPL=0;RPP=16.0391;RPPR=98.5551;RPR=6;RUN=1;SAF=6;SAP=16.0391;SAR=0;SRF=44;SRP=98.5551;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:27:21,6:21:832:6:229:-12.8439,0,-67.0683 0/0:1:1,0:1:39:0:0:0,-0.30103,-3.89656 0/0:22:22,0:22:870:0:0:0,-6.62266,-78.606 dDocent_Contig_12232 16 . C T 30.9199 . AB=0.0978261;ABP=132.26;AC=1;AF=0.166667;AN=6;AO=10;CIGAR=1X;DP=142;DPB=142;DPRA=11.3333;EPP=24.725;EPPR=289.645;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=392;QR=5289;RO=132;RPL=0;RPP=24.725;RPPR=289.645;RPR=10;RUN=1;SAF=10;SAP=24.725;SAR=0;SRF=132;SRP=289.645;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:92:83,9:83:3342:9:355:-4.6145,0,-273.129 0/0:6:6,0:6:244:0:0:0,-1.80618,-22.3388 0/0:44:43,1:43:1703:1:37:0,-9.54749,-149.798 dDocent_Contig_12233 150 . C A 246.572 . AB=0.210526;ABP=44.4969;AC=2;AF=0.333333;AN=6;AO=12;CIGAR=1X;DP=74;DPB=74;DPRA=1.67647;EPP=29.068;EPPR=137.642;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=484;QR=2380;RO=62;RPL=0;RPP=29.068;RPPR=137.642;RPR=12;RUN=1;SAF=0;SAP=29.068;SAR=12;SRF=0;SRP=137.642;SRR=62;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:47:36,11:36:1352:11:444:-26.1663,0,-107.779 0/1:10:9,1:9:350:1:40:-0.985379,0,-28.8452 0/0:17:17,0:17:678:0:0:0,-5.11751,-61.3496 dDocent_Contig_12234 89 . T G 55.7517 . AB=0.235294;ABP=13.3567;AC=2;AF=0.333333;AN=6;AO=4;CIGAR=1X;DP=21;DPB=21;DPRA=2.125;EPP=11.6962;EPPR=39.9253;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=141;QR=599;RO=17;RPL=4;RPP=11.6962;RPPR=39.9253;RPR=0;RUN=1;SAF=4;SAP=11.6962;SAR=0;SRF=17;SRP=39.9253;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:9:8,1:8:286:1:36:-0.889005,0,-23.3762 0/0:4:4,0:4:142:0:0:0,-1.20412,-13.1292 0/1:8:5,3:5:171:3:105:-7.38792,0,-13.3182 dDocent_Contig_12237 107 . N G 81.1848 . AB=0;ABP=0;AC=2;AF=1;AN=2;AO=3;CIGAR=1X2M1X;DP=3;DPB=3;DPRA=0;EPP=9.52472;EPPR=0;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=0;NS=1;NUMALT=1;ODDS=6.68461;PAIRED=1;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=87;QR=0;RO=0;RPL=0;RPP=9.52472;RPPR=0;RPR=3;RUN=1;SAF=0;SAP=9.52472;SAR=3;SRF=0;SRP=0;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL .:.:.:.:.:.:.:. 1|1:3:0,3:0:0:3:87:-8.11794,-0.90309,0 .:.:.:.:.:.:.:. dDocent_Contig_12238 9 . T C 816.902 . AB=0.3125;ABP=37.211;AC=3;AF=0.5;AN=6;AO=35;CIGAR=1X;DP=112;DPB=112;DPRA=0;EPP=79.0118;EPPR=170.214;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=1332;QR=2943;RO=77;RPL=0;RPP=79.0118;RPPR=170.214;RPR=35;RUN=1;SAF=35;SAP=79.0118;SAR=0;SRF=77;SRP=170.214;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:56:37,19:37:1412:19:720:-48.2699,0,-110.502 0/1:28:19,9:19:727:9:346:-23.0704,0,-57.3308 0/1:28:21,7:21:804:7:266:-15.8729,0,-64.2567 dDocent_Contig_12239 51 . A G 611.587 . AB=0.461538;ABP=3.34437;AC=4;AF=0.666667;AN=6;AO=21;CIGAR=1X;DP=35;DPB=35;DPRA=0;EPP=48.6112;EPPR=33.4109;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=794;QR=541;RO=14;RPL=21;RPP=48.6112;RPPR=33.4109;RPR=0;RUN=1;SAF=21;SAP=48.6112;SAR=0;SRF=14;SRP=33.4109;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:12:7,5:7:276:5:185:-13.3896,0,-21.5952 1/1:9:0,9:0:0:9:362:-32.9442,-2.70927,0 0/1:14:7,7:7:265:7:247:-18.3478,0,-19.993 dDocent_Contig_12240 22 . T A 361.877 . AB=0.275862;ABP=28.3192;AC=3;AF=0.5;AN=6;AO=16;CIGAR=1X;DP=58;DPB=58;DPRA=0;EPP=29.6108;EPPR=94.2121;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=0.8125;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=644;QR=1677;RO=42;RPL=0;RPP=37.7539;RPPR=94.2121;RPR=16;RUN=1;SAF=15;SAP=29.6108;SAR=1;SRF=42;SRP=94.2121;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:35:23,12:23:921:12:483:-33.285,0,-72.6542 0/1:5:3,2:3:122:2:80:-6.08642,0,-9.86734 0/1:18:16,2:16:634:2:81:-2.26719,0,-51.9732 dDocent_Contig_12241 133 . T C 76.3714 . AB=0.171429;ABP=35.8306;AC=1;AF=0.166667;AN=6;AO=6;CIGAR=1X;DP=50;DPB=50;DPRA=4.66667;EPP=16.0391;EPPR=98.5551;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=215;QR=1550;RO=44;RPL=0;RPP=16.0391;RPPR=98.5551;RPR=6;RUN=1;SAF=0;SAP=16.0391;SAR=6;SRF=0;SRP=98.5551;SRR=44;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:35:29,6:29:1017:6:215:-9.16001,0,-81.3042 0/0:7:7,0:7:243:0:0:0,-2.10721,-22.2064 0/0:8:8,0:8:290:0:0:0,-2.40824,-26.4484 dDocent_Contig_12242 47 . A G 410.918 . AB=0.518519;ABP=3.09072;AC=1;AF=0.166667;AN=6;AO=14;CIGAR=1X;DP=39;DPB=39;DPRA=4.5;EPP=33.4109;EPPR=57.2971;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=560;QR=1007;RO=25;RPL=14;RPP=33.4109;RPPR=57.2971;RPR=0;RUN=1;SAF=14;SAP=33.4109;SAR=0;SRF=25;SRP=57.2971;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:27:13,14:13:526:14:560:-42.6145,0,-39.5592 0/0:3:3,0:3:122:0:0:0,-0.90309,-11.3725 0/0:9:9,0:9:359:0:0:0,-2.70927,-32.6726 dDocent_Contig_12243 19 . G A 40.3779 . AB=0.166667;ABP=20.3821;AC=1;AF=0.166667;AN=6;AO=7;CIGAR=1X;DP=168;DPB=168;DPRA=1.77027;EPP=18.2106;EPPR=352.617;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=59.4969;NS=3;NUMALT=1;ODDS=3.46945e-18;PAIRED=0.857143;PAIREDR=0.726708;PAO=0;PQA=0;PQR=0;PRO=0;QA=281;QR=6416;RO=161;RPL=0;RPP=18.2106;RPPR=352.617;RPR=7;RUN=1;SAF=7;SAP=18.2106;SAR=0;SRF=161;SRP=352.617;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:113:109,4:109:4327:4:160:0,-19.2326,-374.413 0/1:18:15,3:15:592:3:121:-5.86166,0,-48.1988 0/0:37:37,0:37:1497:0:0:0,-11.1381,-134.919 dDocent_Contig_12244 62 . C T 66.0646 . AB=0.428571;ABP=3.32051;AC=1;AF=0.166667;AN=6;AO=3;CIGAR=1X;DP=38;DPB=38;DPRA=0.451613;EPP=9.52472;EPPR=79.0118;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=0;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=113;QR=1355;RO=35;RPL=3;RPP=9.52472;RPPR=79.0118;RPR=0;RUN=1;SAF=3;SAP=9.52472;SAR=0;SRF=35;SRP=79.0118;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:16:16,0:16:640:0:0:0,-4.81648,-57.9329 0/1:7:4,3:4:160:3:113:-8.43037,0,-12.6766 0/0:15:15,0:15:555:0:0:0,-4.51545,-50.268 dDocent_Contig_12245 36 . C A 2299.47 . AB=0.698113;ABP=39.1469;AC=3;AF=0.5;AN=6;AO=74;CIGAR=1X;DP=106;DPB=106;DPRA=0;EPP=163.699;EPPR=72.4974;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=2960;QR=1274;RO=32;RPL=0;RPP=163.699;RPPR=72.4974;RPR=74;RUN=1;SAF=74;SAP=163.699;SAR=0;SRF=32;SRP=72.4974;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:60:19,41:19:756:41:1648:-130.486,0,-50.303 0/1:6:5,1:5:197:1:40:-2.1895,0,-16.2998 0/1:40:8,32:8:321:32:1272:-102.709,0,-17.2169 dDocent_Contig_12246 8 . T A 78.9411 . 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AB=0.156863;ABP=55.1682;AC=1;AF=0.166667;AN=6;AO=9;CIGAR=1X;DP=73;DPB=73;DPRA=4.71429;EPP=22.5536;EPPR=141.985;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=0;PAIREDR=0.65625;PAO=0;PQA=0;PQR=0;PRO=0;QA=308;QR=2207;RO=64;RPL=0;RPP=22.5536;RPPR=141.985;RPR=9;RUN=1;SAF=0;SAP=22.5536;SAR=9;SRF=0;SRP=141.985;SRR=64;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:51:43,8:43:1477:8:279:-10.0965,0,-117.873 0/0:7:7,0:7:245:0:0:0,-2.10721,-22.3912 0/0:15:14,1:14:485:1:29:0,-1.61579,-41.0805 dDocent_Contig_12248 7 . A G 38.9882 . 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AB=0.135593;ABP=139.114;AC=3;AF=0.5;AN=6;AO=16;CIGAR=1X;DP=118;DPB=118;DPRA=0;EPP=37.7539;EPPR=224.5;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=637;QR=4032;RO=102;RPL=0;RPP=37.7539;RPPR=224.5;RPR=16;RUN=1;SAF=16;SAP=37.7539;SAR=0;SRF=102;SRP=224.5;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:70:62,8:62:2461:8:325:-8.54733,0,-200.567 0/1:12:9,3:9:353:3:122:-7.76013,0,-28.5144 0/1:36:31,5:31:1218:5:190:-6.62689,0,-99.0551 dDocent_Contig_12264 123 . A T 37.3423 . 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AB=0.125;ABP=51.8684;AC=3;AF=0.5;AN=6;AO=5;CIGAR=1X3M;DP=42;DPB=42;DPRA=0;EPP=13.8677;EPPR=61.6401;GTI=0;LEN=1;MEANALT=2;MQM=60;MQMR=60;NS=3;NUMALT=2;ODDS=6.93889e-18;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=195;QR=1065;RO=27;RPL=0;RPP=13.8677;RPPR=61.6401;RPR=5;RUN=1;SAF=5;SAP=13.8677;SAR=0;SRF=27;SRP=61.6401;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|1:21:14,3,4:14:547:3,4:117,156:-8.6091,-3.20635,-47.2701,0,-35.3498,-43.7628 0|1:2:1,1,0:1:40:1,0:39,0:-3.2945,0,-3.39362,-3.59553,-3.69465,-6.89557 0|1:19:12,6,1:12:478:6,1:236,39:-15.804,0,-37.564,-16.2109,-36.1649,-55.2758 dDocent_Contig_12266 12 . C T 587.905 . AB=0.538462;ABP=3.51141;AC=2;AF=0.333333;AN=6;AO=21;CIGAR=1X2M1X;DP=51;DPB=51;DPRA=1.625;EPP=48.6112;EPPR=68.1545;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=3.46945e-18;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=815;QR=1155;RO=30;RPL=0;RPP=48.6112;RPPR=68.1545;RPR=21;RUN=1;SAF=21;SAP=48.6112;SAR=0;SRF=30;SRP=68.1545;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|1:32:15,17:15:576:17:663:-50.372,0,-42.5437 0|1:7:3,4:3:119:4:152:-11.9414,0,-8.98818 0|0:12:12,0:12:460:0:0:0,-3.61236,-41.7492 dDocent_Contig_12268 16 . G T 135.74 . AB=0.131579;ABP=47.8112;AC=1;AF=0.166667;AN=6;AO=5;CIGAR=1X2M1X;DP=48;DPB=48;DPRA=1.9;EPP=13.8677;EPPR=85.5263;GTI=0;LEN=1;MEANALT=1.5;MQM=60;MQMR=60;NS=3;NUMALT=2;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=197;QR=1505;RO=38;RPL=0;RPP=13.8677;RPPR=85.5263;RPR=5;RUN=1;SAF=5;SAP=13.8677;SAR=0;SRF=38;SRP=85.5263;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|1:28:25,3,0:25:996:3,0:117,0:-2.48086,0,-81.5117,-10.0066,-82.4148,-92.0309 0|0:10:10,0,0:10:390:0,0:0,0:0,-3.0103,-35.4576,-3.0103,-35.4576,-35.4576 0|0:10:3,2,5:3:119:2,5:80,189:-14.5706,-8.87747,-18.0784,0,-3.20279,-8.28891 dDocent_Contig_12269 90 . C T 170.198 . AB=0.177215;ABP=74.504;AC=2;AF=0.333333;AN=6;AO=14;CIGAR=1X;DP=81;DPB=81;DPRA=19.75;EPP=33.4109;EPPR=148.499;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=485;QR=2220;RO=67;RPL=14;RPP=33.4109;RPPR=148.499;RPR=0;RUN=1;SAF=14;SAP=33.4109;SAR=0;SRF=67;SRP=148.499;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:59:48,11:48:1626:11:385:-17.2255,0,-128.865 0/0:2:2,0:2:68:0:0:0,-0.60206,-6.45788 0/1:20:17,3:17:526:3:100:-3.30977,0,-41.6136 dDocent_Contig_12270 104 . N C 47.1088 . AB=0;ABP=0;AC=2;AF=1;AN=2;AO=2;CIGAR=4X;DP=2;DPB=2;DPRA=0;EPP=7.35324;EPPR=0;GTI=0;LEN=1;MEANALT=1;MQM=26;MQMR=0;NS=1;NUMALT=1;ODDS=5.99146;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=62;QR=0;RO=0;RPL=0;RPP=7.35324;RPPR=0;RPR=2;RUN=1;SAF=2;SAP=7.35324;SAR=0;SRF=0;SRP=0;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL .:.:.:.:.:.:.:. 1|1:2:0,2:0:0:2:62:-4.70978,-0.60206,0 .:.:.:.:.:.:.:. dDocent_Contig_12271 12 . C T 42.3369 . AB=0.153846;ABP=30.0702;AC=1;AF=0.166667;AN=6;AO=4;CIGAR=1X;DP=59;DPB=59;DPRA=1.57576;EPP=11.6962;EPPR=122.441;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=147;QR=2196;RO=55;RPL=0;RPP=11.6962;RPPR=122.441;RPR=4;RUN=1;SAF=4;SAP=11.6962;SAR=0;SRF=55;SRP=122.441;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:26:22,4:22:861:4:147:-5.75655,0,-69.9757 0/0:19:19,0:19:770:0:0:0,-5.71957,-69.6205 0/0:14:14,0:14:565:0:0:0,-4.21442,-51.1913 dDocent_Contig_12273 124 . C T 247.695 . AB=0.458333;ABP=3.37221;AC=2;AF=0.333333;AN=6;AO=11;CIGAR=1X;DP=34;DPB=34;DPRA=1.2;EPP=26.8965;EPPR=52.9542;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=387;QR=766;RO=23;RPL=0;RPP=26.8965;RPPR=52.9542;RPR=11;RUN=1;SAF=0;SAP=26.8965;SAR=11;SRF=0;SRP=52.9542;SRR=23;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:14:7,7:7:243:7:246:-18.2658,0,-17.9945 0/1:10:6,4:6:187:4:141:-10.0266,0,-14.1264 0/0:10:10,0:10:336:0:0:0,-3.0103,-30.5664 dDocent_Contig_12275 61 . T C 555.323 . AB=0.478261;ABP=3.19912;AC=3;AF=0.5;AN=6;AO=22;CIGAR=1X4M;DP=46;DPB=46;DPRA=0;EPP=50.7827;EPPR=50.7827;GTI=0;LEN=1;MEANALT=1.33333;MQM=60;MQMR=60;NS=3;NUMALT=2;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=818;QR=850;RO=22;RPL=22;RPP=50.7827;RPPR=50.7827;RPR=0;RUN=1;SAF=22;SAP=50.7827;SAR=0;SRF=22;SRP=50.7827;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|1:23:11,0,12:11:429:0,12:0,441:-33.1029,-36.4142,-71.6884,0,-35.6531,-32.0408 0|1:8:2,0,6:2:79:0,6:0,233:-18.9301,-19.5322,-26.0348,0,-6.89557,-5.08939 0|1:15:9,2,4:9:342:2,4:77,144:-9.02206,-5.40063,-32.858,0,-21.7183,-26.8374 dDocent_Contig_12277 56 . A T 65.6722 . AB=0.178571;ABP=28.1373;AC=1;AF=0.166667;AN=6;AO=7;CIGAR=2X;DP=69;DPB=69;DPRA=16.75;EPP=18.2106;EPPR=137.642;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=264;QR=2440;RO=62;RPL=7;RPP=18.2106;RPPR=137.642;RPR=0;RUN=1;SAF=7;SAP=18.2106;SAR=0;SRF=62;SRP=137.642;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|0:39:37,2:37:1474:2:81:0,-4.05444,-125.225 0|0:2:2,0:2:81:0:0:0,-0.60206,-7.68573 0|1:28:23,5:23:885:5:183:-8.39076,0,-71.5179 dDocent_Contig_12278 12 . A G 405.077 . AB=0.352941;ABP=6.20364;AC=3;AF=0.5;AN=6;AO=13;CIGAR=1X;DP=34;DPB=34;DPRA=1.2;EPP=31.2394;EPPR=48.6112;GTI=0;LEN=1;MEANALT=1;MQM=59.0769;MQMR=60;NS=3;NUMALT=1;ODDS=1.73472e-18;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=516;QR=842;RO=21;RPL=0;RPP=31.2394;RPPR=48.6112;RPR=13;RUN=1;SAF=13;SAP=31.2394;SAR=0;SRF=21;SRP=48.6112;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:17:11,6:11:448:6:240:-16.8581,0,-35.5585 1/1:7:0,7:0:0:7:276:-25.1724,-2.10721,0 0/0:10:10,0:10:394:0:0:0,-3.0103,-35.8155 dDocent_Contig_12280 9 . T A 42.7089 . AB=0.112903;ABP=83.705;AC=2;AF=0.333333;AN=6;AO=7;CIGAR=1X;DP=86;DPB=86;DPRA=1.29167;EPP=10.7656;EPPR=157.625;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=59.6962;NS=3;NUMALT=1;ODDS=0;PAIRED=0;PAIREDR=0.822785;PAO=0;PQA=0;PQR=0;PRO=0;QA=275;QR=3040;RO=79;RPL=0;RPP=18.2106;RPPR=174.557;RPR=7;RUN=1;SAF=6;SAP=10.7656;SAR=1;SRF=77;SRP=157.625;SRR=2;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:57:52,5:52:1994:5:195:-0.765487,0,-162.113 0/1:5:3,2:3:117:2:80:-6.08642,0,-9.40523 0/0:24:24,0:24:929:0:0:0,-7.22472,-83.9262 dDocent_Contig_12281 14 . G A 80.7687 . AB=0.055814;ABP=371.464;AC=1;AF=0.166667;AN=6;AO=12;CIGAR=1X1M1X;DP=215;DPB=215;DPRA=0;EPP=29.068;EPPR=417.762;GTI=0;LEN=1;MEANALT=1.66667;MQM=60;MQMR=60;NS=3;NUMALT=2;ODDS=0;PAIRED=1;PAIREDR=0.984293;PAO=0;PQA=0;PQR=0;PRO=0;QA=471;QR=7484;RO=191;RPL=0;RPP=29.068;RPPR=417.762;RPR=12;RUN=1;SAF=12;SAP=29.068;SAR=0;SRF=191;SRP=417.762;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|0:66:58,1,7:58:2261:1,7:41,286:-6.13859,-20.2141,-205.733,0,-182.432,-183.709 0|0:61:54,2,5:54:2098:2,5:79,202:-0.403571,-10.1608,-181.93,0,-165.878,-170.874 0|1:88:79,9,0:79:3125:9,0:351,0:-5.45745,0,-254.851,-29.2388,-257.56,-286.408 dDocent_Contig_12283 35 . T G 1801.49 . AB=0.592233;ABP=10.621;AC=3;AF=0.5;AN=6;AO=61;CIGAR=1X;DP=103;DPB=103;DPRA=0;EPP=135.47;EPPR=94.2121;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=2397;QR=1596;RO=42;RPL=0;RPP=135.47;RPPR=94.2121;RPR=61;RUN=1;SAF=61;SAP=135.47;SAR=0;SRF=42;SRP=94.2121;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:63:24,39:24:912:39:1547:-120.514,0,-63.4291 0/1:15:3,12:3:119:12:463:-37.5011,0,-6.57994 0/1:25:15,10:15:565:10:387:-27.6569,0,-43.6645 dDocent_Contig_12284 7 . A G 47.0173 . AB=0.181818;ABP=32.0291;AC=2;AF=0.333333;AN=6;AO=6;CIGAR=1X;DP=66;DPB=66;DPRA=0.5;EPP=16.0391;EPPR=133.299;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=0;PAIREDR=0.85;PAO=0;PQA=0;PQR=0;PRO=0;QA=195;QR=2322;RO=60;RPL=0;RPP=16.0391;RPPR=133.299;RPR=6;RUN=1;SAF=6;SAP=16.0391;SAR=0;SRF=60;SRP=133.299;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:33:33,0:33:1274:0:0:0,-9.93399,-114.95 0/1:13:10,3:10:387:3:111:-6.4401,0,-31.2741 0/1:20:17,3:17:661:3:84:-1.81491,0,-53.8065 dDocent_Contig_12285 7 . A T 1546.62 . AB=0.0458716;ABP=198.264;AC=0;AF=0;AN=6;AO=5;CIGAR=1M1X3M1X4M;DP=145;DPB=140.4;DPRA=0;EPP=13.8677;EPPR=135.47;GTI=0;LEN=1;MEANALT=3;MQM=60;MQMR=60;NS=3;NUMALT=4;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=194;QR=2372;RO=61;RPL=0;RPP=13.8677;RPPR=135.47;RPR=5;RUN=1;SAF=5;SAP=13.8677;SAR=0;SRF=61;SRP=135.47;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|0:50:28,4,0,6,12:28:1088:4,0,6,12:155,0,224,460:-29.3279,-25.0213,-113.226,-37.7568,-114.43,-127.164,-19.4212,-96.0929,-108.827,-107.021,0,-76.676,-89.4103,-71.0741,-85.7979 0|0:36:4,0,4,8,20:4:152:0,4,8,20:0,135,308,766:-74.5024,-75.7065,-88.1721,-64.771,-77.236,-76.0318,-50.4152,-62.8813,-51.9464,-60.473,-12.8339,-25.302,-14.3722,0,-19.2814 0|0:59:29,1,0,8,21:29:1132:1,0,8,21:39,0,302,794:-56.3542,-61.8778,-154.641,-65.0841,-154.942,-158.148,-40.3325,-130.191,-133.397,-130.989,0,-89.8606,-93.0665,-68.3173,-86.7449 dDocent_Contig_12286 7 . A C 906.443 . AB=0.236842;ABP=25.8679;AC=0;AF=0;AN=6;AO=9;CIGAR=1M8I1M1X;DP=69;DPB=189;DPRA=0;EPP=22.5536;EPPR=55.1256;GTI=0;LEN=1;MEANALT=2;MQM=60;MQMR=60;NS=3;NUMALT=2;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=352;QR=920;RO=24;RPL=0;RPP=22.5536;RPPR=55.1256;RPR=9;RUN=1;SAF=9;SAP=22.5536;SAR=0;SRF=24;SRP=55.1256;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|0:38:11,9,18:11:424:9,18:352,650:-49.709,-24.0691,-56.1865,0,-5.87066,-29.3958 0|0:6:3,0,3:3:112:0,3:0,108:-8.26795,-9.17104,-18.3478,0,-9.54321,-8.64012 0|0:25:10,0,14:10:384:0,14:0,504:-38.1903,-41.2006,-72.7346,0,-31.6255,-27.411 dDocent_Contig_12287 15 . T C 6653.15 . AB=0.310526;ABP=180.751;AC=5;AF=0.833333;AN=6;AO=177;CIGAR=1X5M1X2M1X;DP=570;DPB=570;DPRA=0;EPP=387.361;EPPR=241.948;GTI=0;LEN=1;MEANALT=9.33333;MQM=47.3051;MQMR=60;NS=3;NUMALT=3;ODDS=0;PAIRED=0.745763;PAIREDR=0.526316;PAO=0;PQA=0;PQR=0;PRO=0;QA=6106;QR=4379;RO=114;RPL=0;RPP=387.361;RPPR=250.558;RPR=177;RUN=1;SAF=177;SAP=387.361;SAR=0;SRF=113;SRP=241.948;SRR=1;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 1|1:276:62,97,80,8:62:2390:97,80,8:3857,2931,322:-307.004,-36.691,-203.746,-92.7189,0,-264.888,-301.333,-208.612,-264.636,-495.173 0|1:134:30,44,30,14:30:1137:44,30,14:1697,923,552:-101.474,0,-79.9954,-41.0174,-23.7659,-125.221,-67.958,-50.6963,-91.7093,-156.98 1|1:160:22,55,67,6:22:852:55,67,6:2164,2252,227:-262.36,-106.882,-160.326,-92.095,0,-141.923,-252.489,-160.389,-145.599,-320.677 dDocent_Contig_12289 18 . A T 2157.48 . AB=0.648148;ABP=23.5991;AC=2;AF=0.333333;AN=6;AO=71;CIGAR=1X;DP=127;DPB=127;DPRA=0;EPP=157.185;EPPR=124.613;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=2833;QR=2260;RO=56;RPL=0;RPP=157.185;RPPR=124.613;RPR=71;RUN=1;SAF=71;SAP=157.185;SAR=0;SRF=56;SRP=124.613;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:82:26,56:26:1050:56:2238:-176.896,0,-70.1045 0/0:19:18,1:18:723:1:41:0,-1.625,-61.3018 0/1:26:12,14:12:487:14:554:-42.3749,0,-36.3547 dDocent_Contig_12290 9 . G A 113.527 . AB=0.333333;ABP=7.35324;AC=2;AF=0.333333;AN=6;AO=6;CIGAR=1X;DP=22;DPB=22;DPRA=2.25;EPP=16.0391;EPPR=11.6962;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=0;PAIREDR=0.75;PAO=0;PQA=0;PQR=0;PRO=0;QA=213;QR=593;RO=16;RPL=0;RPP=16.0391;RPPR=37.7539;RPR=6;RUN=1;SAF=0;SAP=16.0391;SAR=6;SRF=12;SRP=11.6962;SRR=4;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:7:6,1:6:219:1:34:-1.2917,0,-17.953 0/0:4:4,0:4:146:0:0:0,-1.20412,-13.4972 0/1:11:6,5:6:228:5:179:-13.1491,0,-17.5726 dDocent_Contig_12291 13 . T C 2432.22 . AB=0.364017;ABP=41.3972;AC=3;AF=0.5;AN=6;AO=87;CIGAR=4M1X4M;DP=239;DPB=237.333;DPRA=0;EPP=191.928;EPPR=289.645;GTI=0;LEN=1;MEANALT=2.66667;MQM=60;MQMR=60;NS=3;NUMALT=2;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=3500;QR=5198;RO=132;RPL=0;RPP=191.928;RPPR=289.645;RPR=87;RUN=1;SAF=87;SAP=191.928;SAR=0;SRF=132;SRP=289.645;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|1:159:98,12,45:98:3852:12,45:459,1813:-119.938,-111.777,-425,0,-279.184,-303.302 0|1:27:5,1,20:5:198:1,20:37,803:-64.6825,-63.162,-79.1571,0,-13.2863,-10.2892 0|1:53:29,2,22:29:1148:2,22:78,884:-64.1246,-66.4437,-160.325,0,-88.0803,-87.8691 dDocent_Contig_12292 24 . G A 938.187 . AB=0.561404;ABP=4.877;AC=2;AF=0.333333;AN=6;AO=32;CIGAR=4X3M1X;DP=60;DPB=60;DPRA=9.5;EPP=72.4974;EPPR=59.4686;GTI=0;LEN=1;MEANALT=1.5;MQM=59.4375;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=1268;QR=1008;RO=26;RPL=0;RPP=72.4974;RPPR=59.4686;RPR=32;RUN=1;SAF=32;SAP=72.4974;SAR=0;SRF=26;SRP=59.4686;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|1:40:11,28:11:417:28:1109:-87.7664,0,-25.7259 0|0:3:2,0:2:77:0:0:0,-0.60206,-7.02132 0|1:17:13,4:13:514:4:159:-9.57482,0,-41.4917 dDocent_Contig_12293 7 . A T 172.171 . AB=0.204082;ABP=40.2799;AC=2;AF=0.333333;AN=6;AO=10;CIGAR=1X;DP=61;DPB=61;DPRA=2.04167;EPP=24.725;EPPR=113.755;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=385;QR=1943;RO=51;RPL=0;RPP=24.725;RPPR=113.755;RPR=10;RUN=1;SAF=10;SAP=24.725;SAR=0;SRF=51;SRP=113.755;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:32:24,8:24:928:8:309:-18.5401,0,-74.2041 0/0:12:12,0:12:448:0:0:0,-3.61236,-40.6655 0/1:17:15,2:15:567:2:76:-2.0973,0,-46.2531 dDocent_Contig_12294 38 . C A 163.294 . AB=0.461538;ABP=3.17734;AC=1;AF=0.166667;AN=6;AO=6;CIGAR=1X;DP=22;DPB=22;DPRA=2.88889;EPP=16.0391;EPPR=37.7539;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=241;QR=616;RO=16;RPL=0;RPP=16.0391;RPPR=37.7539;RPR=6;RUN=1;SAF=6;SAP=16.0391;SAR=0;SRF=16;SRP=37.7539;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:7:7,0:7:259:0:0:0,-2.10721,-23.6547 0/0:2:2,0:2:81:0:0:0,-0.60206,-7.68573 0/1:13:7,6:7:276:6:241:-18.1529,0,-21.2941 dDocent_Contig_12295 17 . T G 121.354 . AB=0.222222;ABP=21.1059;AC=2;AF=0.5;AN=4;AO=6;CIGAR=1X2M1X;DP=27;DPB=27;DPRA=0;EPP=16.0391;EPPR=39.9253;GTI=0;LEN=1;MEANALT=1.5;MQM=60;MQMR=60;NS=2;NUMALT=2;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=243;QR=682;RO=17;RPL=0;RPP=16.0391;RPPR=39.9253;RPR=6;RUN=1;SAF=6;SAP=16.0391;SAR=0;SRF=17;SRP=39.9253;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|1:19:10,5,4:10:402:5,4:203,144:-13.7575,0,-31.6525,-5.04284,-21.4242,-36.9638 .:.:.:.:.:.:.:. 0|1:8:7,1,0:7:280:1,0:40,0:-1.58744,0,-23.163,-3.69465,-23.4641,-26.7591 dDocent_Contig_12296 168 . G C 33.5992 . AB=0.25;ABP=7.35324;AC=1;AF=0.166667;AN=6;AO=2;CIGAR=1X;DP=23;DPB=23;DPRA=1.06667;EPP=7.35324;EPPR=48.6112;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=0;PAIREDR=0.952381;PAO=0;PQA=0;PQR=0;PRO=0;QA=80;QR=784;RO=21;RPL=2;RPP=7.35324;RPPR=48.6112;RPR=0;RUN=1;SAF=0;SAP=7.35324;SAR=2;SRF=0;SRP=48.6112;SRR=21;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:11:11,0:11:399:0:0:0,-3.31133,-36.2421 0/1:8:6,2:6:228:2:80:-5.18355,0,-18.4744 0/0:4:4,0:4:157:0:0:0,-1.20412,-14.5085 dDocent_Contig_12298 31 . G T 1384.34 . AB=0.444444;ABP=5.9056;AC=1;AF=0.166667;AN=6;AO=48;CIGAR=1X;DP=142;DPB=142;DPRA=6.35294;EPP=107.241;EPPR=207.129;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=6.93889e-18;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=1914;QR=3670;RO=94;RPL=0;RPP=107.241;RPPR=207.129;RPR=48;RUN=1;SAF=48;SAP=107.241;SAR=0;SRF=94;SRP=207.129;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:108:60,48:60:2338:48:1914:-139.957,0,-178.104 0/0:5:5,0:5:198:0:0:0,-1.50515,-18.1971 0/0:29:29,0:29:1134:0:0:0,-8.72987,-102.353 dDocent_Contig_12300 64 . C T 121.137 . AB=0.26087;ABP=14.4341;AC=2;AF=0.333333;AN=6;AO=6;CIGAR=1X;DP=27;DPB=27;DPRA=2.875;EPP=16.0391;EPPR=48.6112;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=242;QR=831;RO=21;RPL=6;RPP=16.0391;RPPR=48.6112;RPR=0;RUN=1;SAF=6;SAP=16.0391;SAR=0;SRF=21;SRP=48.6112;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:12:9,3:9:354:3:119:-7.48303,0,-28.6032 0/0:4:4,0:4:159:0:0:0,-1.20412,-14.6914 0/1:11:8,3:8:318:3:123:-8.15346,0,-25.6727 dDocent_Contig_12301 89 . C T 121.747 . AB=0.5;ABP=3.0103;AC=1;AF=0.166667;AN=6;AO=5;CIGAR=1X;DP=37;DPB=37;DPRA=0.740741;EPP=13.8677;EPPR=72.4974;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=8.67362e-19;PAIRED=1;PAIREDR=0.96875;PAO=0;PQA=0;PQR=0;PRO=0;QA=185;QR=1151;RO=32;RPL=5;RPP=13.8677;RPPR=72.4974;RPR=0;RUN=1;SAF=5;SAP=13.8677;SAR=0;SRF=32;SRP=72.4974;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:16:16,0:16:564:0:0:0,-4.81648,-51.0822 0/1:10:5,5:5:193:5:185:-13.9986,0,-14.7311 0/0:11:11,0:11:394:0:0:0,-3.31133,-35.8013 dDocent_Contig_12302 107 . N C 873.233 . AB=0;ABP=0;AC=6;AF=1;AN=6;AO=28;CIGAR=1X;DP=28;DPB=28;DPRA=0;EPP=63.8115;EPPR=0;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=0;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=954;QR=0;RO=0;RPL=0;RPP=63.8115;RPPR=0;RPR=28;RUN=1;SAF=0;SAP=63.8115;SAR=28;SRF=0;SRP=0;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 1/1:22:0,22:0:0:22:752:-67.9984,-6.62266,0 1/1:3:0,3:0:0:3:103:-9.61002,-0.90309,0 1/1:3:0,3:0:0:3:99:-9.2374,-0.90309,0 dDocent_Contig_12303 143 . G A 124.7 . AB=0.833333;ABP=8.80089;AC=1;AF=0.166667;AN=6;AO=7;CIGAR=1X;DP=58;DPB=58;DPRA=5.3;EPP=18.2106;EPPR=113.755;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=0;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=241;QR=1774;RO=51;RPL=0;RPP=18.2106;RPPR=113.755;RPR=7;RUN=1;SAF=0;SAP=18.2106;SAR=7;SRF=0;SRP=113.755;SRR=51;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:47:45,2:45:1568:2:70:0,-7.50101,-134.767 0/0:5:5,0:5:171:0:0:0,-1.50515,-15.7265 0/1:6:1,5:1:35:5:171:-13.9203,0,-1.69245 dDocent_Contig_12306 10 . T C 4315.27 . AB=0.468153;ABP=5.77651;AC=3;AF=0.5;AN=6;AO=147;CIGAR=1X;DP=314;DPB=314;DPRA=0;EPP=322.217;EPPR=365.646;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=0.993197;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=5900;QR=6484;RO=167;RPL=0;RPP=322.217;RPPR=365.646;RPR=147;RUN=1;SAF=147;SAP=322.217;SAR=0;SRF=167;SRP=365.646;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:202:113,89:113:4370:89:3564:-259.971,0,-332.498 0/1:29:15,14:15:583:14:568:-42.7323,0,-44.076 0/1:83:39,44:39:1531:44:1768:-134.346,0,-113.056 dDocent_Contig_12307 16 . T C 63.1474 . AB=0.145833;ABP=55.3066;AC=1;AF=0.166667;AN=6;AO=12;CIGAR=1X;DP=157;DPB=157;DPRA=0;EPP=29.068;EPPR=317.874;GTI=0;LEN=1;MEANALT=1;MQM=37.4167;MQMR=57.2759;NS=3;NUMALT=1;ODDS=0;PAIRED=0;PAIREDR=0.262069;PAO=0;PQA=0;PQR=0;PRO=0;QA=476;QR=5698;RO=145;RPL=0;RPP=29.068;RPPR=317.874;RPR=12;RUN=1;SAF=12;SAP=29.068;SAR=0;SRF=145;SRP=317.874;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:81:78,3:78:3067:3:111:0,-14.867,-261.855 0/1:48:41,7:41:1603:7:283:-8.13861,0,-130.054 0/0:28:26,2:26:1028:2:82:0,-1.54402,-85.6849 dDocent_Contig_12308 83 . A G 281.654 . AB=0.326087;ABP=15.095;AC=2;AF=0.333333;AN=6;AO=15;CIGAR=1X;DP=47;DPB=47;DPRA=23;EPP=35.5824;EPPR=72.4974;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=3.46945e-18;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=499;QR=1099;RO=32;RPL=15;RPP=35.5824;RPPR=72.4974;RPR=0;RUN=1;SAF=15;SAP=35.5824;SAR=0;SRF=32;SRP=72.4974;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:37:25,12:25:857:12:409:-25.9994,0,-66.3068 0/0:1:1,0:1:35:0:0:0,-0.30103,-3.49863 0/1:9:6,3:6:207:3:90:-5.68813,0,-16.2589 dDocent_Contig_12309 23 . T A 391.725 . AB=0.139785;ABP=107.825;AC=2;AF=0.333333;AN=6;AO=13;CIGAR=1M1D1X4M;DP=93;DPB=87.8571;DPRA=0;EPP=31.2394;EPPR=133.299;GTI=0;LEN=1;MEANALT=2.33333;MQM=60;MQMR=60;NS=3;NUMALT=3;ODDS=0;PAIRED=1;PAIREDR=0.95;PAO=0;PQA=0;PQR=0;PRO=0;QA=513;QR=2351;RO=60;RPL=0;RPP=31.2394;RPPR=133.299;RPR=13;RUN=1;SAF=13;SAP=31.2394;SAR=0;SRF=60;SRP=133.299;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|1:52:37,8,7,0:37:1451:8,7,0:319,277,0:-15.1328,0,-116.913,-3.47486,-96.5229,-120.686,-26.2709,-119.321,-122.793,-145.591 0|0:14:7,1,3,3:7:277:1,3,3:41,116,120:-7.78065,-6.50142,-28.9993,-0.367222,-19.7753,-22.2575,0,-19.414,-13.2752,-21.8965 0|1:27:16,8,3,0:16:623:8,3,0:322,120,0:-21.7238,0,-48.7852,-16.6559,-41.3068,-66.9465,-26.5402,-51.1935,-67.8495,-77.7353 dDocent_Contig_12310 24 . G A 1396.2 . AB=0.635135;ABP=14.748;AC=3;AF=0.5;AN=6;AO=47;CIGAR=1X;DP=74;DPB=74;DPRA=0;EPP=105.07;EPPR=61.6401;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=56.2222;NS=3;NUMALT=1;ODDS=6.93889e-18;PAIRED=1;PAIREDR=0.925926;PAO=0;PQA=0;PQR=0;PRO=0;QA=1849;QR=1083;RO=27;RPL=0;RPP=105.07;RPPR=61.6401;RPR=47;RUN=1;SAF=47;SAP=105.07;SAR=0;SRF=27;SRP=61.6401;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:39:14,25:14:569:25:983:-77.0302,0,-39.8123 0/1:10:5,5:5:195:5:203:-15.6428,0,-14.9101 0/1:25:8,17:8:319:17:663:-52.4699,0,-15.9917 dDocent_Contig_12311 9 . G A 1005.88 . AB=0.242424;ABP=41.044;AC=4;AF=0.666666;AN=6;AO=16;CIGAR=1X4M;DP=66;DPB=66;DPRA=0;EPP=37.7539;EPPR=37.7539;GTI=0;LEN=1;MEANALT=2;MQM=38.25;MQMR=60;NS=3;NUMALT=2;ODDS=0;PAIRED=0.4375;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=543;QR=631;RO=16;RPL=0;RPP=37.7539;RPPR=37.7539;RPR=16;RUN=1;SAF=16;SAP=37.7539;SAR=0;SRF=16;SRP=37.7539;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|1:29:8,20,1:8:316:20,1:786,39:-51.4595,0,-19.9915,-50.7026,-22.8505,-76.4226 1|1:19:2,10,7:2:76:10,7:377,195:-32.0499,-7.41347,-10.6644,-18.9032,0,-23.0399 0|1:18:6,4,8:6:239:4,8:158,309:-22.602,-13.6357,-32.124,0,-8.96069,-17.312 dDocent_Contig_12312 20 . G A 72.9686 . AB=0.171429;ABP=35.8306;AC=2;AF=0.333333;AN=6;AO=6;CIGAR=1X;DP=41;DPB=41;DPRA=2.91667;EPP=16.0391;EPPR=79.0118;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=229;QR=1392;RO=35;RPL=0;RPP=16.0391;RPPR=79.0118;RPR=6;RUN=1;SAF=6;SAP=16.0391;SAR=0;SRF=35;SRP=79.0118;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:21:18,3:18:717:3:109:-3.84438,0,-58.5322 0/1:14:11,3:11:435:3:120:-6.97327,0,-35.2901 0/0:6:6,0:6:240:0:0:0,-1.80618,-21.9757 dDocent_Contig_12314 13 . G A 888.995 . AB=0.55814;ABP=4.27278;AC=4;AF=0.666667;AN=6;AO=29;CIGAR=1X;DP=48;DPB=48;DPRA=0;EPP=65.983;EPPR=44.2683;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=0.965517;PAIREDR=0.947368;PAO=0;PQA=0;PQR=0;PRO=0;QA=1159;QR=765;RO=19;RPL=0;RPP=65.983;RPPR=44.2683;RPR=29;RUN=1;SAF=29;SAP=65.983;SAR=0;SRF=19;SRP=44.2683;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:33:12,21:12:481:21:846:-66.519,0,-33.7048 1/1:5:0,5:0:0:5:202:-18.5619,-1.50515,0 0/1:10:7,3:7:284:3:111:-7.34144,0,-22.9235 dDocent_Contig_12315 26 . A G 104.371 . AB=0.3125;ABP=7.89611;AC=2;AF=0.333333;AN=6;AO=5;CIGAR=1X;DP=26;DPB=26;DPRA=0.8;EPP=13.8677;EPPR=48.6112;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=200;QR=849;RO=21;RPL=0;RPP=13.8677;RPPR=48.6112;RPR=5;RUN=1;SAF=5;SAP=13.8677;SAR=0;SRF=21;SRP=48.6112;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:11:9,2:9:366:2:78:-4.09145,0,-29.9938 0/1:5:2,3:2:81:3:122:-9.86734,0,-6.18058 0/0:10:10,0:10:402:0:0:0,-3.0103,-36.5388 dDocent_Contig_12316 26 . G T 536.045 . AB=0.280488;ABP=37.3302;AC=3;AF=0.5;AN=6;AO=23;CIGAR=1X;DP=82;DPB=82;DPRA=0;EPP=52.9542;EPPR=131.127;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=919;QR=2373;RO=59;RPL=0;RPP=52.9542;RPPR=131.127;RPR=23;RUN=1;SAF=23;SAP=52.9542;SAR=0;SRF=59;SRP=131.127;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:25:17,8:17:684:8:312:-20.9136,0,-54.3621 0/1:22:18,4:18:727:4:164:-8.52724,0,-59.1332 0/1:35:24,11:24:962:11:443:-29.6865,0,-76.3428 dDocent_Contig_12317 67 . A T 202.558 . AB=0.444444;ABP=3.49285;AC=2;AF=0.333333;AN=6;AO=8;CIGAR=1X;DP=26;DPB=26;DPRA=1.125;EPP=20.3821;EPPR=42.0968;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=316;QR=714;RO=18;RPL=8;RPP=20.3821;RPPR=42.0968;RPR=0;RUN=1;SAF=8;SAP=20.3821;SAR=0;SRF=18;SRP=42.0968;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:13:8,5:8:317:5:200:-14.4662,0,-24.9819 0/0:8:8,0:8:319:0:0:0,-2.40824,-29.0772 0/1:5:2,3:2:78:3:116:-9.31255,0,-5.89832 dDocent_Contig_12318 130 . T C 265.45 . AB=0.280702;ABP=26.8203;AC=2;AF=0.333333;AN=6;AO=17;CIGAR=1X;DP=73;DPB=73;DPRA=0;EPP=39.9253;EPPR=124.613;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=3.46945e-18;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=553;QR=1906;RO=56;RPL=0;RPP=39.9253;RPPR=124.613;RPR=17;RUN=1;SAF=0;SAP=39.9253;SAR=17;SRF=0;SRP=124.613;SRR=56;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:48:37,11:37:1256:11:379:-19.9927,0,-98.8909 0/1:9:4,5:4:138:5:139:-10.0751,0,-10.0511 0/0:16:15,1:15:512:1:35:0,-1.31785,-42.9066 dDocent_Contig_12319 37 . T C 125.161 . AB=0.160714;ABP=59.0033;AC=2;AF=0.333333;AN=6;AO=10;CIGAR=1X;DP=82;DPB=82;DPRA=0;EPP=24.725;EPPR=159.356;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=398;QR=2738;RO=72;RPL=0;RPP=24.725;RPPR=159.356;RPR=10;RUN=1;SAF=10;SAP=24.725;SAR=0;SRF=72;SRP=159.356;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:50:43,7:43:1655:7:275:-10.0654,0,-134.154 0/1:6:4,2:4:159:2:82:-5.9735,0,-12.8862 0/0:26:25,1:25:924:1:41:0,-3.73221,-79.376 dDocent_Contig_12320 48 . G C 252.58 . AB=0.416667;ABP=4.45795;AC=1;AF=0.25;AN=4;AO=10;CIGAR=1X;DP=29;DPB=29;DPRA=4.8;EPP=24.725;EPPR=44.2683;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=2;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=376;QR=752;RO=19;RPL=0;RPP=24.725;RPPR=44.2683;RPR=10;RUN=1;SAF=10;SAP=24.725;SAR=0;SRF=19;SRP=44.2683;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:24:14,10:14:549:10:376:-26.9569,0,-42.5244 ./.:.:.:.:.:.:.:. 0/0:5:5,0:5:203:0:0:0,-1.50515,-18.6531 dDocent_Contig_12321 34 . A G 50.3323 . AB=0.1875;ABP=16.582;AC=1;AF=0.166667;AN=6;AO=3;CIGAR=1X;DP=29;DPB=29;DPRA=2.46154;EPP=9.52472;EPPR=59.4686;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=122;QR=1047;RO=26;RPL=0;RPP=9.52472;RPPR=59.4686;RPR=3;RUN=1;SAF=3;SAP=9.52472;SAR=0;SRF=26;SRP=59.4686;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:16:13,3:13:524:3:122:-6.55601,0,-42.691 0/0:4:4,0:4:161:0:0:0,-1.20412,-14.8755 0/0:9:9,0:9:362:0:0:0,-2.70927,-32.9442 dDocent_Contig_12322 25 . A T 47.7938 . AB=0.214286;ABP=12.937;AC=1;AF=0.166667;AN=6;AO=3;CIGAR=1X1M1X;DP=71;DPB=71;DPRA=0.491228;EPP=9.52472;EPPR=150.67;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=0.970588;PAO=0;PQA=0;PQR=0;PRO=0;QA=116;QR=2627;RO=68;RPL=0;RPP=9.52472;RPPR=150.67;RPR=3;RUN=1;SAF=3;SAP=9.52472;SAR=0;SRF=68;SRP=150.67;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|0:39:39,0:39:1524:0:0:0,-11.7402,-137.413 0|0:18:18,0:18:673:0:0:0,-5.41854,-60.8893 0|1:14:11,3:11:430:3:116:-6.60328,0,-34.8385 dDocent_Contig_12323 63 . G A 281.504 . AB=0.272727;ABP=22.751;AC=1;AF=0.166667;AN=6;AO=12;CIGAR=1X;DP=62;DPB=62;DPRA=4.88889;EPP=29.068;EPPR=111.584;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=3.46945e-18;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=473;QR=1980;RO=50;RPL=12;RPP=29.068;RPPR=111.584;RPR=0;RUN=1;SAF=12;SAP=29.068;SAR=0;SRF=50;SRP=111.584;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:44:32,12:32:1277:12:473:-29.6731,0,-101.955 0/0:15:15,0:15:588:0:0:0,-4.51545,-53.2586 0/0:3:3,0:3:115:0:0:0,-0.90309,-10.7232 dDocent_Contig_12326 20 . C T 62.6782 . AB=0.222222;ABP=15.074;AC=2;AF=0.333333;AN=6;AO=5;CIGAR=1X;DP=34;DPB=34;DPRA=0;EPP=13.8677;EPPR=65.983;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=0;PAIREDR=0.758621;PAO=0;PQA=0;PQR=0;PRO=0;QA=201;QR=1156;RO=29;RPL=0;RPP=13.8677;RPPR=65.983;RPR=5;RUN=1;SAF=5;SAP=13.8677;SAR=0;SRF=29;SRP=65.983;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:15:13,2:13:522:2:79:-2.98179,0,-42.8117 0/1:3:1,2:1:40:2:81:-6.78264,0,-3.09259 0/0:16:15,1:15:594:1:41:0,-0.721913,-49.705 dDocent_Contig_12327 45 . T C 41.4962 . AB=0.333333;ABP=4.45795;AC=1;AF=0.166667;AN=6;AO=2;CIGAR=1X;DP=40;DPB=40;DPRA=0.352941;EPP=7.35324;EPPR=85.5263;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=82;QR=1486;RO=38;RPL=0;RPP=7.35324;RPPR=85.5263;RPR=2;RUN=1;SAF=2;SAP=7.35324;SAR=0;SRF=38;SRP=85.5263;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:22:22,0:22:882:0:0:0,-6.62266,-79.6908 0/1:6:4,2:4:158:2:82:-5.9735,0,-12.7938 0/0:12:12,0:12:446:0:0:0,-3.61236,-40.4691 dDocent_Contig_12328 8 . T C 419.374 . AB=0.177305;ABP=130.542;AC=3;AF=0.5;AN=6;AO=25;CIGAR=2X1M1X;DP=141;DPB=141;DPRA=0;EPP=57.2971;EPPR=250.558;GTI=0;LEN=1;MEANALT=1.66667;MQM=60;MQMR=59.6754;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=983;QR=4374;RO=114;RPL=0;RPP=57.2971;RPPR=250.558;RPR=25;RUN=1;SAF=25;SAP=57.2971;SAR=0;SRF=114;SRP=250.558;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|1:87:69,16:69:2654:16:630:-31.19,0,-213.181 0|1:21:18,3:18:693:3:119:-4.77376,0,-56.3801 0|1:33:27,6:27:1027:6:234:-11.4962,0,-82.8032 dDocent_Contig_12329 18 . T A 1239.3 . AB=0.320261;ABP=45.943;AC=3;AF=0.5;AN=6;AO=49;CIGAR=1X;DP=153;DPB=153;DPRA=0;EPP=109.412;EPPR=228.843;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=0.971154;PAO=0;PQA=0;PQR=0;PRO=0;QA=1939;QR=4125;RO=104;RPL=0;RPP=109.412;RPPR=228.843;RPR=49;RUN=1;SAF=49;SAP=109.412;SAR=0;SRF=104;SRP=228.843;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:74:49,25:49:1933:25:1006:-68.5613,0,-151.889 0/1:52:33,19:33:1322:19:734:-50.7307,0,-103.585 0/1:27:22,5:22:870:5:199:-10.1605,0,-70.4875 dDocent_Contig_12331 21 . T C 57.0885 . AB=0.16;ABP=28.1125;AC=1;AF=0.166667;AN=6;AO=6;CIGAR=1X;DP=115;DPB=115;DPRA=0.458333;EPP=16.0391;EPPR=239.701;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=245;QR=4120;RO=109;RPL=0;RPP=16.0391;RPPR=239.701;RPR=6;RUN=1;SAF=6;SAP=16.0391;SAR=0;SRF=109;SRP=239.701;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:60:60,0:60:2245:0:0:0,-18.0618,-202.254 0/1:25:21,4:21:794:4:163:-7.53268,0,-64.2448 0/0:30:28,2:28:1081:2:82:0,-1.25122,-89.8108 dDocent_Contig_12332 112 . G A 302.209 . AB=0.459459;ABP=3.5385;AC=3;AF=0.5;AN=6;AO=17;CIGAR=1X;DP=37;DPB=37;DPRA=0;EPP=39.9253;EPPR=46.4397;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=0.882353;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=510;QR=696;RO=20;RPL=0;RPP=39.9253;RPPR=46.4397;RPR=17;RUN=1;SAF=0;SAP=39.9253;SAR=17;SRF=0;SRP=46.4397;SRR=20;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:24:12,12:12:416:12:345:-24.1063,0,-30.5479 0/1:2:1,1:1:35:1:31:-2.49739,0,-2.89657 0/1:11:7,4:7:245:4:134:-9.08001,0,-19.0799 dDocent_Contig_12333 7 . A G 155.919 . AB=0.097561;ABP=60.6867;AC=1;AF=0.166667;AN=6;AO=9;CIGAR=1M1X3M1X3M2X2M1X4M1D5M;DP=177;DPB=174.75;DPRA=1.65854;EPP=22.5536;EPPR=313.531;GTI=0;LEN=1;MEANALT=4.5;MQM=60;MQMR=60;NS=3;NUMALT=3;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=306;QR=5530;RO=143;RPL=0;RPP=22.5536;RPPR=313.531;RPR=9;RUN=1;SAF=9;SAP=22.5536;SAR=0;SRF=143;SRP=313.531;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|0:95:86,1,5,0:86:3316:1,5,0:36,168,0:0,-22.9445,-295.016,-12.2429,-281.71,-283.142,-25.8886,-295.317,-284.647,-298.254 0|1:41:21,8,4,7:21:813:8,4,7:290,138,124:-17.4158,0,-64.4887,-12.5085,-55.6834,-78.1651,-16.5091,-59.6497,-72.1172,-81.2174 0|0:41:36,0,0,3:36:1401:0,0,3:0,0,53:0,-10.8371,-126.134,-10.8371,-126.134,-126.134,-7.69724,-122.929,-122.929,-122.026 dDocent_Contig_12334 19 . A T 438.48 . AB=0.388889;ABP=6.8707;AC=1;AF=0.166667;AN=6;AO=15;CIGAR=3X;DP=53;DPB=53;DPRA=0;EPP=35.5824;EPPR=74.6689;GTI=0;LEN=1;MEANALT=1.33333;MQM=60;MQMR=60;NS=3;NUMALT=2;ODDS=0;PAIRED=0.933333;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=592;QR=1282;RO=33;RPL=0;RPP=35.5824;RPPR=74.6689;RPR=15;RUN=1;SAF=15;SAP=35.5824;SAR=0;SRF=33;SRP=74.6689;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|1:23:12,11,0:12:461:11,0:435,0:-32.5808,0,-34.9097,-36.1932,-38.221,-74.0246 0|0:17:16,1,0:16:625:1,0:38,0:0,-1.32024,-52.7869,-4.81648,-53.0879,-56.2038 0|0:13:5,3,5:5:196:3,5:119,198:-14.79,-6.4997,-21.7124,0,-6.31798,-14.6097 dDocent_Contig_12335 204 . A T 826.487 . AB=0.478261;ABP=3.29354;AC=3;AF=0.5;AN=6;AO=33;CIGAR=1X;DP=69;DPB=69;DPRA=0;EPP=74.6689;EPPR=81.1833;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=1199;QR=1319;RO=36;RPL=33;RPP=74.6689;RPPR=81.1833;RPR=0;RUN=1;SAF=0;SAP=74.6689;SAR=33;SRF=0;SRP=81.1833;SRR=36;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:38:15,23:15:544:23:835:-64.0336,0,-37.8575 0/1:6:3,3:3:111:3:109:-8.36182,0,-8.54774 0/1:25:18,7:18:664:7:255:-15.7761,0,-52.5685 dDocent_Contig_12336 106 . N A 68.3781 . AB=0;ABP=0;AC=2;AF=1;AN=2;AO=2;CIGAR=2X;DP=2;DPB=2;DPRA=0;EPP=7.35324;EPPR=0;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=0;NS=1;NUMALT=1;ODDS=5.99146;PAIRED=1;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=72;QR=0;RO=0;RPL=0;RPP=7.35324;RPPR=0;RPR=2;RUN=1;SAF=0;SAP=7.35324;SAR=2;SRF=0;SRP=0;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 1|1:2:0,2:0:0:2:72:-6.83672,-0.60206,0 .:.:.:.:.:.:.:. .:.:.:.:.:.:.:. dDocent_Contig_12338 186 . T C 174.998 . AB=0.333333;ABP=8.07707;AC=1;AF=0.166667;AN=6;AO=7;CIGAR=1X3M1X;DP=31;DPB=31;DPRA=4.2;EPP=18.2106;EPPR=50.7827;GTI=0;LEN=1;MEANALT=2;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=1.73472e-18;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=279;QR=847;RO=22;RPL=7;RPP=18.2106;RPPR=50.7827;RPR=0;RUN=1;SAF=0;SAP=18.2106;SAR=7;SRF=0;SRP=50.7827;SRR=22;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|0:9:8,0:8:290:0:0:0,-2.40824,-26.1016 0|1:21:13,7:13:518:7:279:-19.323,0,-40.8268 0|0:1:1,0:1:39:0:0:0,-0.30103,-3.89656 dDocent_Contig_12339 62 . C T 178.641 . AB=0.275862;ABP=15.6647;AC=2;AF=0.333333;AN=6;AO=13;CIGAR=1X;DP=109;DPB=109;DPRA=0;EPP=31.2394;EPPR=209.3;GTI=0;LEN=1;MEANALT=1.33333;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=0.968421;PAO=0;PQA=0;PQR=0;PRO=0;QA=527;QR=3798;RO=95;RPL=13;RPP=31.2394;RPPR=209.3;RPR=0;RUN=1;SAF=13;SAP=31.2394;SAR=0;SRF=95;SRP=209.3;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:80:74,5:74:2973:5:201:0,-5.4524,-249.225 0/1:13:9,4:9:344:4:163:-11.145,0,-27.3991 0/1:16:12,4:12:481:4:163:-10.2419,0,-38.8225 dDocent_Contig_12341 11 . G A 2364.48 . AB=0.326241;ABP=76.9636;AC=3;AF=0.5;AN=6;AO=92;CIGAR=1X3M1X;DP=282;DPB=282;DPRA=0;EPP=202.786;EPPR=406.904;GTI=0;LEN=1;MEANALT=2.33333;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=3617;QR=7289;RO=186;RPL=0;RPP=202.786;RPPR=406.904;RPR=92;RUN=1;SAF=92;SAP=202.786;SAR=0;SRF=186;SRP=406.904;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|1:177:128,46:128:5025:46:1813:-110.663,0,-399.46 0|1:36:16,20:16:604:20:785:-60.1356,0,-43.8543 0|1:69:42,26:42:1660:26:1019:-71.1718,0,-128.802 dDocent_Contig_12342 17 . A G 35.8034 . AB=0.210526;ABP=16.8392;AC=1;AF=0.166667;AN=6;AO=4;CIGAR=1X;DP=65;DPB=65;DPRA=0.826087;EPP=3.0103;EPPR=135.47;GTI=0;LEN=1;MEANALT=1;MQM=31;MQMR=44.8197;NS=3;NUMALT=1;ODDS=1.73472e-18;PAIRED=0;PAIREDR=0.47541;PAO=0;PQA=0;PQR=0;PRO=0;QA=149;QR=2465;RO=61;RPL=0;RPP=11.6962;RPPR=135.47;RPR=4;RUN=1;SAF=2;SAP=3.0103;SAR=2;SRF=61;SRP=135.47;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:29:29,0:29:1173:0:0:0,-8.72987,-89.4212 0/1:19:15,4:15:604:4:149:-5.40414,0,-32.1409 0/0:17:17,0:17:688:0:0:0,-5.11751,-52.7372 dDocent_Contig_12344 22 . C T 174.244 . AB=0.25;ABP=11.6962;AC=1;AF=0.166667;AN=6;AO=4;CIGAR=1X3M1X;DP=33;DPB=33;DPRA=0;EPP=11.6962;EPPR=50.7827;GTI=0;LEN=1;MEANALT=1.5;MQM=60;MQMR=60;NS=3;NUMALT=2;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=159;QR=880;RO=22;RPL=0;RPP=11.6962;RPPR=50.7827;RPR=4;RUN=1;SAF=4;SAP=11.6962;SAR=0;SRF=22;SRP=50.7827;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|0:17:12,0,4:12:478:0,4:0,164:-9.92396,-13.5363,-52.8902,0,-39.3513,-38.1472 0|0:6:3,1,2:3:120:1,2:41,73:-5.03037,-2.53448,-12.1394,0,-6.49106,-9.27556 0|1:10:7,3,0:7:282:3,0:118,0:-7.99242,0,-22.7418,-10.0996,-23.6449,-33.3487 dDocent_Contig_12345 17 . A G 348.972 . AB=0.103448;ABP=42.621;AC=0;AF=0;AN=6;AO=3;CIGAR=1X1M2I3M2D1M6I2M;DP=49;DPB=50.8;DPRA=0;EPP=9.52472;EPPR=70.3259;GTI=0;LEN=1;MEANALT=2;MQM=60;MQMR=60;NS=3;NUMALT=2;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=119;QR=1235;RO=31;RPL=0;RPP=9.52472;RPPR=70.3259;RPR=3;RUN=1;SAF=3;SAP=9.52472;SAR=0;SRF=31;SRP=70.3259;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|0:29:20,3,6:20:796:3,6:119,244:-14.1123,-10.3401,-74.9727,0,-55.7476,-63.7373 0|0:10:4,0,6:4:160:0,6:0,240:-18.9655,-20.1696,-33.35,0,-13.5799,-11.7737 0|0:10:7,0,3:7:279:0,3:0,111:-7.34231,-9.44952,-32.4458,0,-23.3745,-22.4714 dDocent_Contig_12347 31 . C G 44.557 . AB=0.115385;ABP=69.8248;AC=2;AF=0.333333;AN=6;AO=7;CIGAR=1X;DP=71;DPB=71;DPRA=0;EPP=18.2106;EPPR=141.985;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=0.96875;PAO=0;PQA=0;PQR=0;PRO=0;QA=282;QR=2594;RO=64;RPL=0;RPP=18.2106;RPPR=141.985;RPR=7;RUN=1;SAF=7;SAP=18.2106;SAR=0;SRF=64;SRP=141.985;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:47:43,4:43:1746:4:159:-0.543545,0,-143.201 0/1:5:3,2:3:120:2:82:-6.27453,0,-9.68275 0/0:19:18,1:18:728:1:41:0,-1.625,-61.75 dDocent_Contig_12350 8 . T C 49.373 . AB=0.166667;ABP=31.9633;AC=1;AF=0.166667;AN=6;AO=13;CIGAR=1X;DP=174;DPB=174;DPRA=0;EPP=31.2394;EPPR=352.617;GTI=0;LEN=1;MEANALT=1;MQM=45.0769;MQMR=58.9255;NS=3;NUMALT=1;ODDS=0;PAIRED=0.461538;PAIREDR=0.906832;PAO=0;PQA=0;PQR=0;PRO=0;QA=480;QR=6096;RO=161;RPL=0;RPP=31.2394;RPPR=352.617;RPR=13;RUN=1;SAF=13;SAP=31.2394;SAR=0;SRF=161;SRP=352.617;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:104:97,7:97:3701:7:252:0,-10.5188,-309.873 0/1:30:25,5:25:926:5:189:-6.76121,0,-74.6128 0/0:40:39,1:39:1469:1:39:0,-8.49507,-127.331 dDocent_Contig_12351 80 . T C 73.0297 . AB=0.6;ABP=3.44459;AC=1;AF=0.166667;AN=6;AO=3;CIGAR=1X;DP=56;DPB=56;DPRA=0.196078;EPP=9.52472;EPPR=118.098;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=114;QR=2082;RO=53;RPL=3;RPP=9.52472;RPPR=118.098;RPR=0;RUN=1;SAF=3;SAP=9.52472;SAR=0;SRF=53;SRP=118.098;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:29:29,0:29:1166:0:0:0,-8.72987,-105.219 0/1:5:2,3:2:73:3:114:-9.12683,0,-5.42555 0/0:22:22,0:22:843:0:0:0,-6.62266,-76.193 dDocent_Contig_12352 81 . G C 143.94 . AB=0.6;ABP=3.87889;AC=1;AF=0.166667;AN=6;AO=6;CIGAR=1X;DP=37;DPB=37;DPRA=0.740741;EPP=16.0391;EPPR=70.3259;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=8.67362e-19;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=210;QR=1192;RO=31;RPL=6;RPP=16.0391;RPPR=70.3259;RPR=0;RUN=1;SAF=6;SAP=16.0391;SAR=0;SRF=31;SRP=70.3259;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:22:22,0:22:832:0:0:0,-6.62266,-75.1809 0/1:10:4,6:4:159:6:210:-16.2179,0,-11.6817 0/0:5:5,0:5:201:0:0:0,-1.50515,-18.4705 dDocent_Contig_12353 24 . T C 33.5224 . AB=0.176471;ABP=18.4661;AC=1;AF=0.166667;AN=6;AO=3;CIGAR=1X;DP=33;DPB=33;DPRA=2.125;EPP=9.52472;EPPR=68.1545;GTI=0;LEN=1;MEANALT=1;MQM=50.3333;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=108;QR=1195;RO=30;RPL=0;RPP=9.52472;RPPR=68.1545;RPR=3;RUN=1;SAF=3;SAP=9.52472;SAR=0;SRF=30;SRP=68.1545;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:17:14,3:14:555:3:108:-4.87419,0,-45.174 0/0:1:1,0:1:41:0:0:0,-0.30103,-4.09457 0/0:15:15,0:15:599:0:0:0,-4.51545,-54.2466 dDocent_Contig_12354 26 . A G 50.6955 . AB=0.235294;ABP=13.3567;AC=1;AF=0.166667;AN=6;AO=4;CIGAR=1X;DP=54;DPB=54;DPRA=0.918919;EPP=11.6962;EPPR=111.584;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=130;QR=2004;RO=50;RPL=0;RPP=11.6962;RPPR=111.584;RPR=4;RUN=1;SAF=4;SAP=11.6962;SAR=0;SRF=50;SRP=111.584;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:30:30,0:30:1210:0:0:0,-9.0309,-109.174 0/1:17:13,4:13:531:4:130:-6.89344,0,-43.0189 0/0:7:7,0:7:263:0:0:0,-2.10721,-24.0234 dDocent_Contig_12355 16 . A G 100.669 . AB=0.166667;ABP=49.335;AC=3;AF=0.5;AN=6;AO=8;CIGAR=1X;DP=48;DPB=48;DPRA=0;EPP=20.3821;EPPR=89.8692;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=301;QR=1593;RO=40;RPL=0;RPP=20.3821;RPPR=89.8692;RPR=8;RUN=1;SAF=8;SAP=20.3821;SAR=0;SRF=40;SRP=89.8692;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:15:12,3:12:474:3:99:-4.71542,0,-38.4926 0/1:25:23,2:23:920:2:81:-0.159984,0,-75.5815 0/1:8:5,3:5:199:3:121:-8.87196,0,-15.8792 dDocent_Contig_12356 21 . G T 66.2595 . AB=0.05;ABP=143.722;AC=0;AF=0;AN=6;AO=4;CIGAR=3M1X3M;DP=129;DPB=121.857;DPRA=3.26531;EPP=11.6962;EPPR=250.558;GTI=0;LEN=1;MEANALT=3;MQM=60;MQMR=60;NS=3;NUMALT=2;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=160;QR=4510;RO=114;RPL=0;RPP=11.6962;RPPR=250.558;RPR=4;RUN=1;SAF=4;SAP=11.6962;SAR=0;SRF=114;SRP=250.558;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|0:80:65,10,4:65:2580:10,4:342,160:-8.14882,0,-209.379,-14.5228,-199.21,-225.754 0|0:8:8,0,0:8:314:0,0:0,0:0,-2.40824,-28.6253,-2.40824,-28.6253,-28.6253 0|0:41:41,0,0:41:1616:0,0:0,0:0,-12.3422,-145.687,-12.3422,-145.687,-145.687 dDocent_Contig_12357 21 . A G 74.6004 . AB=0.172414;ABP=30.0414;AC=1;AF=0.166667;AN=6;AO=13;CIGAR=1X;DP=262;DPB=262;DPRA=0;EPP=31.2394;EPPR=543.707;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=59.9558;NS=3;NUMALT=1;ODDS=0;PAIRED=0.615385;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=520;QR=10015;RO=249;RPL=0;RPP=31.2394;RPPR=543.707;RPR=13;RUN=1;SAF=13;SAP=31.2394;SAR=0;SRF=249;SRP=543.707;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:180:174,6:174:7004:6:242:0,-32.0284,-607.853 0/1:29:24,5:24:968:5:196:-9.28395,0,-78.6896 0/0:53:51,2:51:2043:2:82:0,-8.17491,-176.273 dDocent_Contig_12358 47 . G C 306.333 . AB=0.4;ABP=5.61607;AC=2;AF=0.5;AN=4;AO=12;CIGAR=1X;DP=30;DPB=30;DPRA=0;EPP=29.068;EPPR=42.0968;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=2;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=463;QR=726;RO=18;RPL=0;RPP=29.068;RPPR=42.0968;RPR=12;RUN=1;SAF=12;SAP=29.068;SAR=0;SRF=18;SRP=42.0968;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:20:9,11:9:366:11:422:-32.3067,0,-27.2843 ./.:.:.:.:.:.:.:. 0/1:10:9,1:9:360:1:41:-1.08427,0,-29.7535 dDocent_Contig_12360 12 . T C 193.994 . AB=0.152174;ABP=99.688;AC=3;AF=0.5;AN=6;AO=14;CIGAR=1X;DP=92;DPB=92;DPRA=0;EPP=33.4109;EPPR=172.385;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=6.93889e-18;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=571;QR=3137;RO=78;RPL=0;RPP=33.4109;RPPR=172.385;RPR=14;RUN=1;SAF=14;SAP=33.4109;SAR=0;SRF=78;SRP=172.385;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:69:62,7:62:2496:7:285:-5.25313,0,-204.007 0/1:17:11,6:11:439:6:245:-17.312,0,-34.7473 0/1:6:5,1:5:202:1:41:-2.28839,0,-16.7559 dDocent_Contig_12361 18 . T C 76.9465 . AB=0.185185;ABP=26.2531;AC=1;AF=0.166667;AN=6;AO=7;CIGAR=1X;DP=150;DPB=150;DPRA=1.0625;EPP=18.2106;EPPR=309.188;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=51.9574;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=0.702128;PAO=0;PQA=0;PQR=0;PRO=0;QA=271;QR=5561;RO=141;RPL=0;RPP=18.2106;RPPR=309.188;RPR=7;RUN=1;SAF=7;SAP=18.2106;SAR=0;SRF=141;SRP=309.188;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:75:73,2:73:2866:2:79:0,-15.0796,-229.277 0/1:27:22,5:22:862:5:192:-9.51856,0,-61.5 0/0:48:46,0:46:1833:0:0:0,-13.8474,-153.91 dDocent_Contig_12362 17 . G A 347.984 . AB=0.195876;ABP=80.9371;AC=3;AF=0.5;AN=6;AO=19;CIGAR=1X1M4I2M;DP=97;DPB=116;DPRA=0;EPP=44.2683;EPPR=172.385;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=760;QR=3050;RO=78;RPL=0;RPP=44.2683;RPPR=172.385;RPR=19;RUN=1;SAF=19;SAP=44.2683;SAR=0;SRF=78;SRP=172.385;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|1:60:50,10:50:1953:10:402:-18.4787,0,-157.92 0|1:9:4,5:4:153:5:200:-15.6709,0,-11.4304 0|1:28:24,4:24:944:4:158:-6.17181,0,-76.8401 dDocent_Contig_12363 7 . A G 57.173 . AB=0;ABP=0;AC=2;AF=0.333333;AN=6;AO=4;CIGAR=1X;DP=22;DPB=22;DPRA=0.444444;EPP=11.6962;EPPR=42.0968;GTI=0;LEN=1;MEANALT=1;MQM=15;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=0;PAIREDR=0.777778;PAO=0;PQA=0;PQR=0;PRO=0;QA=150;QR=679;RO=18;RPL=0;RPP=11.6962;RPPR=42.0968;RPR=4;RUN=1;SAF=4;SAP=11.6962;SAR=0;SRF=18;SRP=42.0968;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:9:9,0:9:341:0:0:0,-2.70927,-31.0449 0/0:9:9,0:9:338:0:0:0,-2.70927,-30.7737 1/1:4:0,4:0:0:4:150:-5.54111,-1.20412,0 dDocent_Contig_12364 71 . C A 30.9511 . AB=0.285714;ABP=5.80219;AC=1;AF=0.166667;AN=6;AO=2;CIGAR=1X;DP=43;DPB=43;DPRA=0.388889;EPP=7.35324;EPPR=92.0407;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=74;QR=1559;RO=41;RPL=2;RPP=7.35324;RPPR=92.0407;RPR=0;RUN=1;SAF=2;SAP=7.35324;SAR=0;SRF=41;SRP=92.0407;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:19:19,0:19:734:0:0:0,-5.71957,-66.391 0/0:17:17,0:17:642:0:0:0,-5.11751,-58.114 0/1:7:5,2:5:183:2:74:-4.91867,0,-14.7195 dDocent_Contig_12365 16 . G T 752.825 . AB=0.295238;ABP=41.2489;AC=3;AF=0.5;AN=6;AO=31;CIGAR=1X;DP=105;DPB=105;DPRA=0;EPP=70.3259;EPPR=163.699;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=1237;QR=2952;RO=74;RPL=0;RPP=70.3259;RPPR=163.699;RPR=31;RUN=1;SAF=31;SAP=70.3259;SAR=0;SRF=74;SRP=163.699;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:71:47,24:47:1869:24:950:-64.4257,0,-147.037 0/1:18:14,4:14:551:4:164:-9.73136,0,-44.5068 0/1:16:13,3:13:532:3:123:-6.64831,0,-43.4097 dDocent_Contig_12366 10 . T G 16395.5 . AB=0;ABP=0;AC=0;AF=0;AN=6;AO=13;CIGAR=1X3M1X;DP=533;DPB=533;DPRA=0.910053;EPP=31.2394;EPPR=37.7539;GTI=0;LEN=1;MEANALT=6.5;MQM=59.0769;MQMR=60;NS=3;NUMALT=2;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=519;QR=628;RO=16;RPL=0;RPP=31.2394;RPPR=37.7539;RPR=13;RUN=1;SAF=13;SAP=31.2394;SAR=0;SRF=16;SRP=37.7539;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|0:204:8,5,179:8:315:5,179:195,7078:-607.701,-594.1,-618.508,-27.9718,-37.8758,0 0|0:189:0,0,180:0:0:0,180:0,7117:-637.78,-637.78,-637.78,-54.1854,-54.1854,0 0|0:140:8,8,118:8:313:8,118:324,4715:-393.594,-369.285,-392.61,-9.78737,-8.79611,0 dDocent_Contig_12367 26 . A T 134.327 . AB=0.416667;ABP=3.73412;AC=1;AF=0.25;AN=4;AO=5;CIGAR=1M1D1X;DP=25;DPB=23.3333;DPRA=0.923077;EPP=13.8677;EPPR=46.4397;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=2;NUMALT=1;ODDS=0;PAIRED=0;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=204;QR=799;RO=20;RPL=0;RPP=13.8677;RPPR=46.4397;RPR=5;RUN=1;SAF=5;SAP=13.8677;SAR=0;SRF=20;SRP=46.4397;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|1:12:7,5:7:283:5:204:-15.1317,0,-22.2312 .:.:.:.:.:.:.:. 0|0:13:13,0:13:516:0:0:0,-3.91339,-46.7862 dDocent_Contig_12368 24 . A C 3473.18 . AB=0.0566038;ABP=184.021;AC=3;AF=0.5;AN=6;AO=6;CIGAR=3M1X;DP=152;DPB=180;DPRA=0;EPP=16.0391;EPPR=74.6689;GTI=0;LEN=1;MEANALT=2.5;MQM=60;MQMR=60;NS=3;NUMALT=2;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=243;QR=1299;RO=33;RPL=0;RPP=16.0391;RPPR=74.6689;RPR=6;RUN=1;SAF=6;SAP=16.0391;SAR=0;SRF=33;SRP=74.6689;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|1:92:15,72,5:15:595:72,5:2825,203:-227.779,0,-27.295,-215.552,-32.2246,-263.023 0|1:14:7,5,1:7:276:5,1:191,40:-13.5491,0,-21.1961,-12.3591,-19.4056,-34.7687 0|1:46:11,35,0:11:428:35,0:1390,0:-111.512,0,-25.02,-114.824,-35.5561,-149.989 dDocent_Contig_12369 21 . A C 55.835 . AB=0.166667;ABP=31.9633;AC=2;AF=0.333333;AN=6;AO=5;CIGAR=1M2I1M1X;DP=38;DPB=41.3333;DPRA=1.875;EPP=13.8677;EPPR=74.6689;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=193;QR=1307;RO=33;RPL=0;RPP=13.8677;RPPR=74.6689;RPR=5;RUN=1;SAF=5;SAP=13.8677;SAR=0;SRF=33;SRP=74.6689;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|1:25:22,3:22:873:3:115:-3.19898,0,-71.3526 0|0:8:8,0:8:323:0:0:0,-2.40824,-29.4392 0|1:5:3,2:3:111:2:78:-5.89832,0,-8.84697 dDocent_Contig_12370 48 . T A 687.962 . AB=0.268293;ABP=22.1298;AC=2;AF=0.333333;AN=6;AO=11;CIGAR=1X1M1X;DP=97;DPB=97;DPRA=0;EPP=26.8965;EPPR=141.985;GTI=0;LEN=1;MEANALT=2;MQM=60;MQMR=60;NS=3;NUMALT=2;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=412;QR=2497;RO=64;RPL=0;RPP=26.8965;RPPR=141.985;RPR=11;RUN=1;SAF=11;SAP=26.8965;SAR=0;SRF=64;SRP=141.985;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|0:56:38,0,18:38:1476:0,18:0,722:-48.4473,-59.8864,-181.148,0,-121.658,-116.239 0|1:11:6,4,1:6:235:4,1:159,40:-11.283,0,-18.1126,-9.79356,-16.0204,-28.8128 0|1:30:20,7,3:20:786:7,3:253,123:-14.5889,0,-62.5261,-10.4427,-54.4788,-74.2109 dDocent_Contig_12371 107 . N G 65.5803 . AB=0;ABP=0;AC=2;AF=1;AN=2;AO=4;CIGAR=1X;DP=4;DPB=4;DPRA=0;EPP=11.6962;EPPR=0;GTI=0;LEN=1;MEANALT=1;MQM=24;MQMR=0;NS=1;NUMALT=1;ODDS=7.37776;PAIRED=1;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=136;QR=0;RO=0;RPL=0;RPP=11.6962;RPPR=0;RPR=4;RUN=1;SAF=0;SAP=11.6962;SAR=4;SRF=0;SRP=0;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 1/1:4:0,4:0:0:4:136:-6.55776,-1.20412,0 ./.:.:.:.:.:.:.:. ./.:.:.:.:.:.:.:. dDocent_Contig_12372 20 . A G 62.4567 . AB=0.166667;ABP=31.9633;AC=1;AF=0.166667;AN=6;AO=5;CIGAR=1X;DP=101;DPB=101;DPRA=0.84507;EPP=13.8677;EPPR=211.472;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=186;QR=3745;RO=96;RPL=0;RPP=13.8677;RPPR=211.472;RPR=5;RUN=1;SAF=5;SAP=13.8677;SAR=0;SRF=96;SRP=211.472;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:66:66,0:66:2584:0:0:0,-19.868,-232.719 0/0:5:5,0:5:184:0:0:0,-1.50515,-16.9156 0/1:30:25,5:25:977:5:186:-8.06953,0,-79.2052 dDocent_Contig_12373 45 . T A 902.683 . AB=0.574074;ABP=5.5839;AC=3;AF=0.5;AN=6;AO=31;CIGAR=2X;DP=54;DPB=54;DPRA=0;EPP=70.3259;EPPR=52.9542;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=1233;QR=896;RO=23;RPL=0;RPP=70.3259;RPPR=52.9542;RPR=31;RUN=1;SAF=31;SAP=70.3259;SAR=0;SRF=23;SRP=52.9542;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|1:22:9,13:9:364:13:513:-39.8948,0,-26.5021 0|1:26:12,14:12:452:14:558:-42.7358,0,-33.1921 0|1:6:2,4:2:80:4:162:-13.1606,0,-5.78561 dDocent_Contig_12374 8 . T C 194.617 . AB=0.310345;ABP=12.0706;AC=3;AF=0.5;AN=6;AO=9;CIGAR=1X;DP=29;DPB=29;DPRA=0;EPP=22.5536;EPPR=46.4397;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=343;QR=764;RO=20;RPL=0;RPP=22.5536;RPPR=46.4397;RPR=9;RUN=1;SAF=9;SAP=22.5536;SAR=0;SRF=20;SRP=46.4397;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:14:8,6:8:311:6:232:-17.0346,0,-24.1399 0/1:12:11,1:11:414:1:39:-0.284205,0,-33.9968 0/1:3:1,2:1:39:2:72:-5.93282,0,-2.99347 dDocent_Contig_12375 10 . T C 955.858 . AB=0.247368;ABP=108.338;AC=3;AF=0.5;AN=6;AO=47;CIGAR=1X;DP=190;DPB=190;DPRA=0;EPP=105.07;EPPR=311.359;GTI=0;LEN=1;MEANALT=1.33333;MQM=45.3191;MQMR=59.8451;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=1898;QR=5512;RO=142;RPL=0;RPP=105.07;RPPR=311.359;RPR=47;RUN=1;SAF=47;SAP=105.07;SAR=0;SRF=142;SRP=311.359;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:122:94,27:94:3640:27:1097:-60.0264,0,-290.95 0/1:10:8,2:8:278:2:76:-2.78698,0,-22.3378 0/1:58:40,18:40:1594:18:725:-38.2723,0,-126.241 dDocent_Contig_12376 90 . G T 861.159 . AB=0.5;ABP=3.0103;AC=2;AF=0.5;AN=4;AO=34;CIGAR=1X;DP=68;DPB=68;DPRA=0;EPP=76.8404;EPPR=76.8404;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=2;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=1218;QR=1150;RO=34;RPL=34;RPP=76.8404;RPPR=76.8404;RPR=0;RUN=1;SAF=34;SAP=76.8404;SAR=0;SRF=34;SRP=76.8404;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:50:25,25:25:835:25:896:-65.9092,0,-60.4046 ./.:.:.:.:.:.:.:. 0/1:18:9,9:9:315:9:322:-23.9057,0,-23.2702 dDocent_Contig_12377 184 . T C 48.6519 . AB=0.148148;ABP=32.0437;AC=1;AF=0.25;AN=4;AO=4;CIGAR=2X;DP=35;DPB=35;DPRA=3.375;EPP=11.6962;EPPR=70.3259;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=2;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=159;QR=1211;RO=31;RPL=4;RPP=11.6962;RPPR=70.3259;RPR=0;RUN=1;SAF=0;SAP=11.6962;SAR=4;SRF=0;SRP=70.3259;SRR=31;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|1:27:23,4:23:896:4:159:-6.56414,0,-72.8169 .:.:.:.:.:.:.:. 0|0:8:8,0:8:315:0:0:0,-2.40824,-28.7152 dDocent_Contig_12379 8 . T C 87.7018 . AB=0.162162;ABP=39.6906;AC=1;AF=0.166667;AN=6;AO=7;CIGAR=2X;DP=61;DPB=61;DPRA=5.6;EPP=18.2106;EPPR=120.27;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=273;QR=2047;RO=54;RPL=0;RPP=18.2106;RPPR=120.27;RPR=7;RUN=1;SAF=7;SAP=18.2106;SAR=0;SRF=54;SRP=120.27;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|1:37:31,6:31:1169:6:234:-10.293,0,-94.3699 0|0:5:5,0:5:188:0:0:0,-1.50515,-17.2835 0|0:19:18,1:18:690:1:39:0,-1.82301,-58.5378 dDocent_Contig_12380 1 . N A 191.291 . AB=0.6;ABP=3.44459;AC=4;AF=1;AN=4;AO=9;CIGAR=1X4M;DP=11;DPB=11;DPRA=0;EPP=22.5536;EPPR=0;GTI=0;LEN=1;MEANALT=1.5;MQM=20.2222;MQMR=0;NS=2;NUMALT=2;ODDS=0;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=182;QR=0;RO=0;RPL=0;RPP=22.5536;RPPR=0;RPR=9;RUN=1;SAF=0;SAP=22.5536;SAR=9;SRF=0;SRP=0;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 1|1:6:0,0,6:0:0:0,6:0,147:-11.8237,-11.8237,-11.8237,-1.80618,-1.80618,0 1|1:5:0,2,3:0:0:2,3:79,35:-8.03834,-1.66086,-1.0588,-6.64289,0,-5.7398 .:.:.:.:.:.:.:. dDocent_Contig_12381 67 . T C 1213.9 . AB=0.688525;ABP=21.8416;AC=3;AF=0.5;AN=6;AO=42;CIGAR=1X;DP=61;DPB=61;DPRA=0;EPP=94.2121;EPPR=44.2683;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=1603;QR=724;RO=19;RPL=42;RPP=94.2121;RPPR=44.2683;RPR=0;RUN=1;SAF=42;SAP=94.2121;SAR=0;SRF=19;SRP=44.2683;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:37:11,26:11:413:26:986:-77.8906,0,-26.3777 0/1:13:3,10:3:117:10:393:-31.8133,0,-6.99699 0/1:11:5,6:5:194:6:224:-17.2089,0,-14.5215 dDocent_Contig_12383 7 . A G 138.08 . AB=0.666667;ABP=3.73412;AC=1;AF=0.166667;AN=6;AO=2;CIGAR=2X1M1X;DP=33;DPB=33;DPRA=0;EPP=7.35324;EPPR=52.9542;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=2;ODDS=0;PAIRED=1;PAIREDR=0.913043;PAO=0;PQA=0;PQR=0;PRO=0;QA=75;QR=879;RO=23;RPL=0;RPP=7.35324;RPPR=52.9542;RPR=2;RUN=1;SAF=2;SAP=7.35324;SAR=0;SRF=23;SRP=52.9542;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|0:21:15,6,0:15:572:6,0:233,0:-11.0819,0,-45.5008,-15.5973,-47.3069,-62.5694 0|1:3:1,0,2:1:39:0,2:0,75:-6.21725,-6.51828,-9.72913,0,-3.59553,-2.99347 0|0:9:7,1,0:7:268:1,0:39,0:-1.09867,0,-21.6867,-3.20588,-21.9877,-25.1943 dDocent_Contig_12384 55 . G C 311.469 . AB=0.52381;ABP=3.1137;AC=2;AF=0.333333;AN=6;AO=11;CIGAR=1X;DP=28;DPB=28;DPRA=1.5;EPP=26.8965;EPPR=39.9253;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=0.909091;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=447;QR=655;RO=17;RPL=11;RPP=26.8965;RPPR=39.9253;RPR=0;RUN=1;SAF=11;SAP=26.8965;SAR=0;SRF=17;SRP=39.9253;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:14:7,7:7:270:7:285:-21.81,0,-20.4457 0/0:7:7,0:7:281:0:0:0,-2.10721,-25.6622 0/1:7:3,4:3:104:4:162:-12.8597,0,-7.59171 dDocent_Contig_12385 12 . T A 64.6955 . AB=0.3;ABP=6.48466;AC=1;AF=0.166667;AN=6;AO=3;CIGAR=1X;DP=34;DPB=34;DPRA=0.833333;EPP=9.52472;EPPR=70.3259;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=0;PAIREDR=0.967742;PAO=0;PQA=0;PQR=0;PRO=0;QA=118;QR=1215;RO=31;RPL=0;RPP=9.52472;RPPR=70.3259;RPR=3;RUN=1;SAF=3;SAP=9.52472;SAR=0;SRF=31;SRP=70.3259;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:10:7,3:7:280:3:118:-7.99242,0,-22.5615 0/0:17:17,0:17:662:0:0:0,-5.11751,-59.9071 0/0:7:7,0:7:273:0:0:0,-2.10721,-24.9355 dDocent_Contig_12386 126 . A T 908.442 . AB=0.493671;ABP=3.03779;AC=3;AF=0.5;AN=6;AO=39;CIGAR=1X;DP=79;DPB=79;DPRA=0;EPP=87.6977;EPPR=89.8692;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=1324;QR=1383;RO=40;RPL=0;RPP=87.6977;RPPR=89.8692;RPR=39;RUN=1;SAF=0;SAP=87.6977;SAR=39;SRF=0;SRP=89.8692;SRR=40;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:52:23,29:23:801:29:978:-72.6721,0,-56.7557 0/1:6:4,2:4:137:2:70:-4.84115,0,-10.8616 0/1:21:13,8:13:445:8:276:-18.8536,0,-34.0542 dDocent_Contig_12387 10 . T C 247.37 . AB=0.25;ABP=7.35324;AC=3;AF=0.5;AN=6;AO=8;CIGAR=1X;DP=20;DPB=20;DPRA=1.16667;EPP=20.3821;EPPR=29.068;GTI=0;LEN=1;MEANALT=1;MQM=56.25;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=0.75;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=313;QR=453;RO=12;RPL=0;RPP=20.3821;RPPR=29.068;RPR=8;RUN=1;SAF=8;SAP=20.3821;SAR=0;SRF=12;SRP=29.068;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:8:6,2:6:231:2:82:-5.10525,0,-18.7476 1/1:6:0,6:0:0:6:231:-21.1544,-1.80618,0 0/0:6:6,0:6:222:0:0:0,-1.80618,-20.3335 dDocent_Contig_12388 106 . N A 72.0062 . AB=0;ABP=0;AC=2;AF=1;AN=2;AO=2;CIGAR=1X6I1X;DP=2;DPB=8;DPRA=0;EPP=7.35324;EPPR=0;GTI=0;LEN=1;MEANALT=1;MQM=54;MQMR=0;NS=1;NUMALT=1;ODDS=5.99146;PAIRED=1;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=76;QR=0;RO=0;RPL=0;RPP=7.35324;RPPR=0;RPR=2;RUN=1;SAF=2;SAP=7.35324;SAR=0;SRF=0;SRP=0;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL .:.:.:.:.:.:.:. 1|1:2:0,2:0:0:2:76:-7.19953,-0.60206,0 .:.:.:.:.:.:.:. dDocent_Contig_12389 20 . G T 151.758 . AB=0.183673;ABP=45.5977;AC=2;AF=0.333333;AN=6;AO=10;CIGAR=1X;DP=78;DPB=78;DPRA=0;EPP=24.725;EPPR=150.67;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=3.46945e-18;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=404;QR=2740;RO=68;RPL=0;RPP=24.725;RPPR=150.67;RPR=10;RUN=1;SAF=10;SAP=24.725;SAR=0;SRF=68;SRP=150.67;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:27:24,3:24:979:3:119:-2.9672,0,-80.277 0/0:29:28,1:28:1117:1:41:0,-4.6353,-96.7184 0/1:22:16,6:16:644:6:244:-15.7162,0,-51.6673 dDocent_Contig_12390 8 . T C 2046.14 . AB=0.149688;ABP=515.717;AC=0;AF=0;AN=6;AO=72;CIGAR=1X3M;DP=481;DPB=481;DPRA=0;EPP=3.49285;EPPR=59.491;GTI=0;LEN=1;MEANALT=4;MQM=60;MQMR=59.9347;NS=3;NUMALT=3;ODDS=0;PAIRED=0;PAIREDR=0.0859107;PAO=0;PQA=0;PQR=0;PRO=0;QA=2663;QR=10741;RO=291;RPL=0;RPP=159.356;RPPR=634.909;RPR=72;RUN=1;SAF=38;SAP=3.49285;SAR=34;SRF=189;SRP=59.491;SRR=102;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|0:180:117,5,27,31:117:4332:5,27,31:190,997,1146:-58.5009,-78.1632,-431.042,-12.1774,-351.003,-358.433,0,-338.826,-272.839,-345.051 0|0:148:74,9,21,39:74:2719:9,21,39:332,783,1441:-95.3068,-90.4323,-309.996,-53.4802,-248.605,-269.433,0,-195.125,-158.174,-210.535 0|0:153:100,1,24,28:100:3690:1,24,28:39,883,1061:-56.3291,-83.2325,-384.691,-14.2406,-312.797,-308.771,0,-298.563,-229.567,-293.333 dDocent_Contig_12391 8 . T A 124.495 . AB=0.5;ABP=3.0103;AC=1;AF=0.166667;AN=6;AO=2;CIGAR=1M3D3M6I1X10M1D2M1X;DP=103;DPB=102.682;DPRA=0.047619;EPP=7.35324;EPPR=183.243;GTI=0;LEN=1;MEANALT=2;MQM=12;MQMR=60;NS=3;NUMALT=4;ODDS=0;PAIRED=0;PAIREDR=1;PAO=1;PQA=40;PQR=0;PRO=0;QA=24;QR=3211;RO=83;RPL=0;RPP=7.35324;RPPR=183.243;RPR=2;RUN=1;SAF=2;SAP=7.35324;SAR=0;SRF=83;SRP=183.243;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|0:84:73,0,5,1,2:73:2846:0,5,1,2:0,182,30,79:0,-21.9752,-255.942,-7.09409,-241.079,-239.574,-19.581,-253.544,-238.682,-253.243,-15.4632,-249.441,-234.578,-247.044,-248.839 1|0:4:0,2,0,2,0:0:0:2,0,2,0:24,0,82,0:-7.68995,-6.77475,-6.17269,-7.68995,-6.77475,-7.68995,-0.835626,0,-0.835626,-0.233566,-7.68995,-6.77475,-7.68995,-0.835626,-7.68995 0|0:15:10,0,3,0,2:10:365:0,3,0,2:0,116,0,79:-6.51231,-9.52261,-39.3223,0,-29.7914,-28.8883,-9.52261,-39.3223,-29.7914,-39.3223,-3.01833,-32.818,-23.2855,-32.818,-32.216 dDocent_Contig_12396 14 . T A 674.552 . AB=0.510638;ABP=3.0565;AC=3;AF=0.5;AN=6;AO=24;CIGAR=1X;DP=47;DPB=47;DPRA=0;EPP=55.1256;EPPR=52.9542;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=956;QR=919;RO=23;RPL=0;RPP=55.1256;RPPR=52.9542;RPR=24;RUN=1;SAF=24;SAP=55.1256;SAR=0;SRF=23;SRP=52.9542;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:26:10,16:10:399:16:643:-50.3753,0,-28.4391 0/1:6:3,3:3:123:3:119:-9.28883,0,-9.65861 0/1:15:10,5:10:397:5:194:-13.314,0,-31.5724 dDocent_Contig_12398 35 . T C 486.045 . AB=0.439024;ABP=4.33437;AC=3;AF=0.5;AN=6;AO=18;CIGAR=1X;DP=41;DPB=41;DPRA=0;EPP=42.0968;EPPR=52.9542;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=726;QR=911;RO=23;RPL=0;RPP=42.0968;RPPR=52.9542;RPR=18;RUN=1;SAF=18;SAP=42.0968;SAR=0;SRF=23;SRP=52.9542;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:20:14,6:14:560:6:243:-16.2276,0,-44.7216 0/1:11:6,5:6:228:5:200:-15.0671,0,-17.5657 0/1:10:3,7:3:123:7:283:-22.8327,0,-8.45449 dDocent_Contig_12399 17 . T G 1215.69 . AB=0.645161;ABP=14.358;AC=3;AF=0.5;AN=6;AO=40;CIGAR=1X;DP=62;DPB=62;DPRA=0;EPP=89.8692;EPPR=50.7827;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=1608;QR=872;RO=22;RPL=0;RPP=89.8692;RPPR=50.7827;RPR=40;RUN=1;SAF=40;SAP=89.8692;SAR=0;SRF=22;SRP=50.7827;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:34:11,23:11:428:23:918:-72.6861,0,-28.6305 0/1:11:4,7:4:159:7:286:-22.8035,0,-11.3806 0/1:17:7,10:7:285:10:404:-31.6025,0,-20.9067 dDocent_Contig_12400 32 . T C 1317.16 . AB=0.559322;ABP=4.81373;AC=3;AF=0.5;AN=6;AO=33;CIGAR=1X1M;DP=67;DPB=67;DPRA=3.6875;EPP=26.7649;EPPR=55.1256;GTI=0;LEN=1;MEANALT=1.5;MQM=60;MQMR=60;NS=3;NUMALT=2;ODDS=0;PAIRED=0.575758;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=1294;QR=962;RO=24;RPL=0;RPP=74.6689;RPPR=55.1256;RPR=33;RUN=1;SAF=26;SAP=26.7649;SAR=7;SRF=24;SRP=55.1256;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|1:32:16,0,16:16:641:0,16:0,634:-47.7617,-52.5782,-105.388,0,-53.2073,-48.3909 0|0:8:8,0,0:8:321:0,0:0,0:0,-2.40824,-29.2587,-2.40824,-29.2587,-29.2587 1|1:27:0,10,17:0:0:10,17:399,660:-87.4772,-54.6135,-51.6032,-33.2583,0,-28.1408 dDocent_Contig_12401 107 . N G 155.087 . AB=0;ABP=0;AC=4;AF=1;AN=4;AO=5;CIGAR=1X;DP=5;DPB=5;DPRA=0;EPP=13.8677;EPPR=0;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=0;NS=2;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=162;QR=0;RO=0;RPL=0;RPP=13.8677;RPPR=0;RPR=5;RUN=1;SAF=0;SAP=13.8677;SAR=5;SRF=0;SRP=0;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 1/1:4:0,4:0:0:4:132:-12.2066,-1.20412,0 1/1:1:0,1:0:0:1:30:-2.99957,-0.30103,0 ./.:.:.:.:.:.:.:. dDocent_Contig_12402 8 . T C 1059.2 . AB=0.148515;ABP=111.39;AC=0;AF=0;AN=6;AO=15;CIGAR=2X;DP=101;DPB=101;DPRA=0;EPP=35.5824;EPPR=102.898;GTI=0;LEN=1;MEANALT=2;MQM=60;MQMR=60;NS=3;NUMALT=2;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=560;QR=1737;RO=46;RPL=0;RPP=35.5824;RPPR=102.898;RPR=15;RUN=1;SAF=15;SAP=35.5824;SAR=0;SRF=46;SRP=102.898;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|0:59:31,8,20:31:1171:8,20:292,760:-53.0038,-38.4884,-132.058,0,-72.1405,-89.9689 0|0:11:2,1,8:2:77:1,8:38,299:-23.8757,-21.3605,-27.3841,0,-3.21084,-3.91746 0|0:31:13,6,12:13:489:6,12:230,468:-34.5614,-19.5993,-57.8505,0,-21.1797,-36.4473 dDocent_Contig_12403 18 . G T 627.089 . AB=0.230769;ABP=84.8581;AC=3;AF=0.5;AN=6;AO=30;CIGAR=1X;DP=130;DPB=130;DPRA=0;EPP=68.1545;EPPR=220.158;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=0.7;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=1181;QR=3821;RO=100;RPL=0;RPP=68.1545;RPPR=220.158;RPR=30;RUN=1;SAF=30;SAP=68.1545;SAR=0;SRF=100;SRP=220.158;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:83:69,14:69:2646:14:551:-24.9491,0,-213.324 0/1:17:6,11:6:234:11:433:-34.207,0,-16.3127 0/1:30:25,5:25:941:5:197:-9.07567,0,-75.9644 dDocent_Contig_12405 33 . C T 333.682 . AB=0.295455;ABP=19.0002;AC=1;AF=0.166667;AN=6;AO=13;CIGAR=1X;DP=70;DPB=70;DPRA=3.38462;EPP=31.2394;EPPR=126.784;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=3.46945e-18;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=531;QR=2268;RO=57;RPL=0;RPP=31.2394;RPPR=126.784;RPR=13;RUN=1;SAF=13;SAP=31.2394;SAR=0;SRF=57;SRP=126.784;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:44:31,13:31:1245:13:531:-34.8911,0,-99.0746 0/0:6:6,0:6:215:0:0:0,-1.80618,-19.6891 0/0:20:20,0:20:808:0:0:0,-6.0206,-73.0352 dDocent_Contig_12406 9 . G A 4360.03 . AB=0.815029;ABP=152.139;AC=4;AF=0.666667;AN=6;AO=141;CIGAR=1X4M;DP=173;DPB=173;DPRA=0;EPP=309.188;EPPR=48.6112;GTI=0;LEN=1;MEANALT=2;MQM=60;MQMR=60;NS=3;NUMALT=2;ODDS=1.38778e-17;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=5376;QR=805;RO=21;RPL=0;RPP=309.188;RPPR=48.6112;RPR=141;RUN=1;SAF=141;SAP=309.188;SAR=0;SRF=21;SRP=48.6112;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|1:103:9,6,87:9:350:6,87:225,3315:-269.216,-253.496,-280.454,0,-10.3459,-2.57954 0|1:46:10,0,36:10:379:0,36:0,1374:-110.098,-113.109,-144.183,0,-31.4535,-20.6165 1|1:24:2,4,18:2:76:4,18:154,687:-62.1758,-50.133,-55.1616,-6.41632,0,-7.22902 dDocent_Contig_12407 9 . G A 69.9114 . AB=0.222222;ABP=15.074;AC=1;AF=0.166667;AN=6;AO=4;CIGAR=1X;DP=75;DPB=75;DPRA=0.631579;EPP=11.6962;EPPR=157.185;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=48.5915;NS=3;NUMALT=1;ODDS=1.73472e-18;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=154;QR=2734;RO=71;RPL=0;RPP=11.6962;RPPR=157.185;RPR=4;RUN=1;SAF=4;SAP=11.6962;SAR=0;SRF=71;SRP=157.185;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:35:35,0:35:1348:0:0:0,-10.536,-104.619 0/0:22:22,0:22:855:0:0:0,-6.62266,-68.7999 0/1:18:14,4:14:531:4:154:-8.81505,0,-40.2133 dDocent_Contig_12408 32 . C T 1017.55 . AB=0.0909091;ABP=66.97;AC=1;AF=0.166667;AN=6;AO=4;CIGAR=1X3M1X;DP=81;DPB=81;DPRA=0;EPP=11.6962;EPPR=81.1833;GTI=0;LEN=1;MEANALT=2;MQM=60;MQMR=60;NS=3;NUMALT=2;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=159;QR=1395;RO=36;RPL=0;RPP=11.6962;RPPR=81.1833;RPR=4;RUN=1;SAF=4;SAP=11.6962;SAR=0;SRF=36;SRP=81.1833;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|0:37:22,0,14:22:861:0,14:0,461:-28.7798,-35.4024,-106.252,0,-71.0916,-66.8771 1|0:13:2,3,8:2:71:3,8:119,294:-26.3682,-17.1622,-22.0438,-4.05328,0,-7.41268 0|0:31:12,1,18:12:463:1,18:40,698:-52.1301,-52.4462,-90.1685,0,-34.711,-32.5886 dDocent_Contig_12409 104 . N A 1068.73 . AB=0;ABP=0;AC=6;AF=1;AN=6;AO=35;CIGAR=4X;DP=36;DPB=36;DPRA=0;EPP=79.0118;EPPR=0;GTI=0;LEN=1;MEANALT=1.33333;MQM=60;MQMR=0;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=1175;QR=0;RO=0;RPL=0;RPP=79.0118;RPPR=0;RPR=35;RUN=1;SAF=0;SAP=79.0118;SAR=35;SRF=0;SRP=0;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 1|1:21:0,20:0:0:20:667:-60.0153,-6.0206,0 1|1:5:0,5:0:0:5:167:-15.3596,-1.50515,0 1|1:10:0,10:0:0:10:341:-31.0207,-3.0103,0 dDocent_Contig_12410 50 . T C 34.276 . AB=0.176471;ABP=33.9218;AC=2;AF=0.333333;AN=6;AO=6;CIGAR=1X4M1D1X1M1X;DP=51;DPB=50;DPRA=1;EPP=16.0391;EPPR=92.0407;GTI=0;LEN=1;MEANALT=2.5;MQM=37.5;MQMR=60;NS=3;NUMALT=2;ODDS=0;PAIRED=0;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=185;QR=1582;RO=41;RPL=3;RPP=3.0103;RPPR=92.0407;RPR=3;RUN=1;SAF=3;SAP=3.0103;SAR=3;SRF=41;SRP=92.0407;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|1:29:21,2,4:21:820:2,4:81,120:-2.52776,-2.13449,-69.0413,0,-60.7906,-66.268 0|1:5:3,0,2:3:116:0,2:0,65:-4.38009,-5.28318,-14.8574,0,-9.91461,-9.31255 0|0:17:17,0,0:17:646:0,0:0,0:0,-5.11751,-58.4722,-5.11751,-58.4722,-58.4722 dDocent_Contig_12411 58 . T C 122.518 . AB=0.21875;ABP=24.9965;AC=2;AF=0.333333;AN=6;AO=7;CIGAR=1X;DP=37;DPB=37;DPRA=3.2;EPP=18.2106;EPPR=68.1545;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=273;QR=1160;RO=30;RPL=7;RPP=18.2106;RPPR=68.1545;RPR=0;RUN=1;SAF=7;SAP=18.2106;SAR=0;SRF=30;SRP=68.1545;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:19:17,2:17:662:2:78:-1.6839,0,-54.1969 0/1:13:8,5:8:313:5:195:-14.0108,0,-24.6199 0/0:5:5,0:5:185:0:0:0,-1.50515,-17.01 dDocent_Contig_12413 20 . A C 319.704 . AB=0.413793;ABP=4.88226;AC=2;AF=0.333333;AN=6;AO=12;CIGAR=1X;DP=30;DPB=30;DPRA=14.5;EPP=3.0103;EPPR=42.0968;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=0;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=483;QR=713;RO=18;RPL=0;RPP=29.068;RPPR=42.0968;RPR=12;RUN=1;SAF=6;SAP=3.0103;SAR=6;SRF=18;SRP=42.0968;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:13:9,4:9:357:4:160:-10.87,0,-28.579 0/1:16:8,8:8:316:8:323:-24.6225,0,-23.9888 0/0:1:1,0:1:40:0:0:0,-0.30103,-3.99568 dDocent_Contig_12414 15 . G A 92.2025 . AB=0.120482;ABP=106.849;AC=1;AF=0.166667;AN=6;AO=12;CIGAR=1X;DP=144;DPB=144;DPRA=4.64286;EPP=29.068;EPPR=289.645;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=474;QR=5097;RO=132;RPL=0;RPP=29.068;RPPR=289.645;RPR=12;RUN=1;SAF=12;SAP=29.068;SAR=0;SRF=132;SRP=289.645;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:83:73,10:73:2827:10:393:-10.7431,0,-229.608 0/0:14:14,0:14:535:0:0:0,-4.21442,-48.4926 0/0:47:45,2:45:1735:2:81:0,-6.46268,-148.714 dDocent_Contig_12417 7 . A C 49.9701 . AB=0.230769;ABP=11.1951;AC=1;AF=0.25;AN=4;AO=4;CIGAR=1X;DP=33;DPB=33;DPRA=0;EPP=11.6962;EPPR=65.983;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=2;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=156;QR=1112;RO=29;RPL=0;RPP=11.6962;RPPR=65.983;RPR=4;RUN=1;SAF=4;SAP=11.6962;SAR=0;SRF=29;SRP=65.983;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:20:19,1:19:737:1:39:0,-2.12404,-62.7647 ./.:.:.:.:.:.:.:. 0/1:13:10,3:10:375:3:117:-6.99699,0,-30.1875 dDocent_Contig_12418 60 . A G 231.386 . AB=0.244444;ABP=28.5372;AC=1;AF=0.166667;AN=6;AO=11;CIGAR=1X2M1X;DP=157;DPB=157;DPRA=0.803571;EPP=26.8965;EPPR=320.045;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=424;QR=5736;RO=146;RPL=11;RPP=26.8965;RPPR=320.045;RPR=0;RUN=1;SAF=11;SAP=26.8965;SAR=0;SRF=146;SRP=320.045;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|0:85:85,0:85:3347:0:0:0,-25.5875,-301.311 0|0:27:27,0:27:1055:0:0:0,-8.12781,-95.2455 0|1:45:34,11:34:1334:11:424:-24.9625,0,-106.789 dDocent_Contig_12419 1 . N G 102.447 . AB=0;ABP=0;AC=2;AF=1;AN=2;AO=3;CIGAR=1X;DP=3;DPB=3;DPRA=0;EPP=9.52472;EPPR=0;GTI=0;LEN=1;MEANALT=1;MQM=47;MQMR=0;NS=1;NUMALT=1;ODDS=6.68461;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=111;QR=0;RO=0;RPL=0;RPP=9.52472;RPPR=0;RPR=3;RUN=1;SAF=0;SAP=9.52472;SAR=3;SRF=0;SRP=0;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 1/1:3:0,3:0:0:3:111:-10.2441,-0.90309,0 ./.:.:.:.:.:.:.:. ./.:.:.:.:.:.:.:. dDocent_Contig_12420 121 . T C 32.4046 . AB=0.5;ABP=3.0103;AC=1;AF=0.166667;AN=6;AO=2;CIGAR=1X;DP=42;DPB=42;DPRA=0.210526;EPP=7.35324;EPPR=89.8692;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=66;QR=1403;RO=40;RPL=0;RPP=7.35324;RPPR=89.8692;RPR=2;RUN=1;SAF=0;SAP=7.35324;SAR=2;SRF=0;SRP=89.8692;SRR=40;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:32:32,0:32:1118:0:0:0,-9.63296,-100.927 0/0:6:6,0:6:214:0:0:0,-1.80618,-19.6078 0/1:4:2,2:2:71:2:66:-5.06406,0,-5.53794 dDocent_Contig_12421 11 . C A 350.285 . AB=0.208791;ABP=70.0396;AC=3;AF=0.5;AN=6;AO=19;CIGAR=1X2M1X;DP=91;DPB=91;DPRA=0;EPP=44.2683;EPPR=159.356;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=742;QR=2824;RO=72;RPL=0;RPP=44.2683;RPPR=159.356;RPR=19;RUN=1;SAF=19;SAP=44.2683;SAR=0;SRF=72;SRP=159.356;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|1:44:32,12:32:1254:12:471:-29.4907,0,-99.8898 0|1:28:25,3:25:974:3:115:-2.29537,0,-79.5363 0|1:19:15,4:15:596:4:156:-8.69755,0,-48.2583 dDocent_Contig_12422 15 . G A 400.899 . AB=0.363636;ABP=10.1169;AC=3;AF=0.5;AN=6;AO=16;CIGAR=1X;DP=44;DPB=44;DPRA=0;EPP=37.7539;EPPR=63.8115;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=641;QR=1125;RO=28;RPL=0;RPP=37.7539;RPPR=63.8115;RPR=16;RUN=1;SAF=16;SAP=37.7539;SAR=0;SRF=28;SRP=63.8115;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:25:17,8:17:685:8:322:-21.8224,0,-54.4534 0/1:5:1,4:1:41:4:160:-13.2783,0,-2.58942 0/1:14:10,4:10:399:4:159:-10.4764,0,-32.0546 dDocent_Contig_12423 29 . G T 46.4855 . AB=0.142857;ABP=34.0313;AC=1;AF=0.166667;AN=6;AO=4;CIGAR=1X;DP=47;DPB=47;DPRA=2.94737;EPP=11.6962;EPPR=96.3836;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=158;QR=1683;RO=43;RPL=0;RPP=11.6962;RPPR=96.3836;RPR=4;RUN=1;SAF=4;SAP=11.6962;SAR=0;SRF=43;SRP=96.3836;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:28:24,4:24:959:4:158:-6.17106,0,-78.1848 0/0:2:2,0:2:82:0:0:0,-0.60206,-7.77968 0/0:17:17,0:17:642:0:0:0,-5.11751,-58.0983 dDocent_Contig_12424 12 . T A 5434.53 . AB=0.0483559;ABP=1835.02;AC=0;AF=0;AN=6;AO=50;CIGAR=1X3M1X2M1X;DP=1034;DPB=1033.88;DPRA=0;EPP=111.584;EPPR=843.392;GTI=0;LEN=1;MEANALT=13;MQM=56.76;MQMR=58.5064;NS=3;NUMALT=6;ODDS=0;PAIRED=0.9;PAIREDR=0.976982;PAO=0;PQA=0;PQR=0;PRO=0;QA=1952;QR=15375;RO=391;RPL=0;RPP=111.584;RPPR=852.056;RPR=50;RUN=1;SAF=50;SAP=111.584;SAR=0;SRF=390;SRP=843.392;SRR=1;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|0:465:170,21,106,21,27,19,69:170:6714:21,106,21,27,19,69:823,4154,847,1028,758,2720:-279.315,-263.144,-809.093,0,-484.929,-520.365,-260.673,-745.599,-482.457,-806.622,-248.372,-733.298,-470.157,-730.826,-792.515,-268.16,-753.087,-489.945,-750.615,-738.314,-814.712,-119.583,-604.509,-341.368,-602.038,-589.737,-609.525,-651.083 0|0:212:75,21,55,6,15,14,16:75:2931:21,55,6,15,14,16:813,2153,239,479,552,636:-152.556,-110.564,-340.854,0,-172.049,-220.061,-155.453,-327.496,-216.938,-390.258,-138.85,-310.89,-200.333,-355.779,-370.942,-129.804,-301.847,-191.289,-346.736,-330.13,-362.201,-124.102,-296.146,-185.587,-341.035,-324.428,-315.386,-355.897 0|0:357:146,8,49,25,29,14,51:146:5730:8,49,25,29,14,51:316,1959,991,899,546,2018:-117.106,-135.087,-599.472,0,-440.83,-452.048,-79.4902,-520.316,-385.234,-538.759,-92.2964,-533.116,-398.036,-477.521,-550.355,-116.72,-557.544,-422.463,-501.949,-514.749,-579.299,-11.2207,-452.045,-316.963,-396.45,-409.251,-433.678,-462.661 dDocent_Contig_12425 1 . N A 481.48 . AB=0;ABP=0;AC=6;AF=1;AN=6;AO=13;CIGAR=1X;DP=13;DPB=13;DPRA=0;EPP=31.2394;EPPR=0;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=0;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=517;QR=0;RO=0;RPL=0;RPP=31.2394;RPPR=0;RPR=13;RUN=1;SAF=13;SAP=31.2394;SAR=0;SRF=0;SRP=0;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 1/1:5:0,5:0:0:5:190:-17.4631,-1.50515,0 1/1:3:0,3:0:0:3:122:-11.3725,-0.90309,0 1/1:5:0,5:0:0:5:205:-18.835,-1.50515,0 dDocent_Contig_12426 53 . C T 74.0029 . AB=0.175;ABP=39.7082;AC=2;AF=0.333333;AN=6;AO=7;CIGAR=1X;DP=56;DPB=56;DPRA=1.25;EPP=18.2106;EPPR=109.412;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=59.449;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=247;QR=1937;RO=49;RPL=7;RPP=18.2106;RPPR=109.412;RPR=0;RUN=1;SAF=7;SAP=18.2106;SAR=0;SRF=49;SRP=109.412;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:31:26,5:26:1042:5:197:-8.77128,0,-84.7139 0/0:16:16,0:16:629:0:0:0,-4.81648,-56.9161 0/1:9:7,2:7:266:2:50:-2.03557,0,-21.5567 dDocent_Contig_12427 7 . A G 66.5421 . AB=0.266667;ABP=10.1038;AC=1;AF=0.166667;AN=6;AO=4;CIGAR=1X;DP=27;DPB=27;DPRA=2.5;EPP=11.6962;EPPR=50.7827;GTI=0;LEN=1;MEANALT=2;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=1.73472e-18;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=139;QR=827;RO=22;RPL=0;RPP=11.6962;RPPR=50.7827;RPR=4;RUN=1;SAF=4;SAP=11.6962;SAR=0;SRF=22;SRP=50.7827;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:7:7,0:7:272:0:0:0,-2.10721,-24.8472 0/0:5:5,0:5:185:0:0:0,-1.50515,-17.0076 0/1:15:10,4:10:370:4:139:-8.47806,0,-29.2962 dDocent_Contig_12429 21 . A C 476.297 . AB=0.26506;ABP=42.8032;AC=3;AF=0.5;AN=6;AO=22;CIGAR=1X;DP=83;DPB=83;DPRA=0;EPP=50.7827;EPPR=135.47;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=856;QR=2425;RO=61;RPL=0;RPP=50.7827;RPPR=135.47;RPR=22;RUN=1;SAF=22;SAP=50.7827;SAR=0;SRF=61;SRP=135.47;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:50:38,12:38:1517:12:468:-27.4211,0,-121.724 0/1:25:20,5:20:795:5:193:-10.2156,0,-64.344 0/1:8:3,5:3:113:5:195:-15.516,0,-8.12778 dDocent_Contig_12430 17 . C A 829.733 . AB=0.0882353;ABP=53.0819;AC=0;AF=0;AN=6;AO=3;CIGAR=1M1X1M;DP=116;DPB=202.333;DPRA=0;EPP=9.52472;EPPR=168.042;GTI=0;LEN=1;MEANALT=2;MQM=60;MQMR=60;NS=3;NUMALT=2;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=122;QR=3029;RO=76;RPL=0;RPP=9.52472;RPPR=168.042;RPR=3;RUN=1;SAF=3;SAP=9.52472;SAR=0;SRF=76;SRP=168.042;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|0:55:36,18,0:36:1449:18,0:673,0:-44.363,0,-114.13,-55.2001,-119.548,-174.642 0|0:27:18,9,0:18:708:9,0:333,0:-22.1894,0,-55.9188,-27.6079,-58.628,-85.8585 0|0:34:22,9,3:22:872:9,3:348,122:-21.9438,0,-69.0541,-18.4983,-61.6989,-89.3744 dDocent_Contig_12431 13 . A G 196.468 . AB=0.166667;ABP=78.288;AC=2;AF=0.333333;AN=6;AO=14;CIGAR=1X;DP=121;DPB=121;DPRA=0;EPP=33.4109;EPPR=226.753;GTI=0;LEN=1;MEANALT=1;MQM=48.6429;MQMR=57.2336;NS=3;NUMALT=1;ODDS=0;PAIRED=0;PAIREDR=0.186916;PAO=0;PQA=0;PQR=0;PRO=0;QA=559;QR=4273;RO=107;RPL=0;RPP=33.4109;RPPR=235.358;RPR=14;RUN=1;SAF=14;SAP=33.4109;SAR=0;SRF=106;SRP=226.753;SRR=1;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:65:54,11:54:2147:11:436:-19.4119,0,-171.961 0/1:13:11,2:11:428:2:82:-3.75522,0,-34.9327 0/0:43:42,1:42:1698:1:41:0,-8.90818,-136.204 dDocent_Contig_12432 124 . T G 30.6322 . AB=0.176471;ABP=18.4661;AC=1;AF=0.166667;AN=6;AO=4;CIGAR=1X;DP=42;DPB=42;DPRA=1.6;EPP=11.6962;EPPR=61.5258;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=52.9737;NS=3;NUMALT=1;ODDS=0;PAIRED=0;PAIREDR=0.605263;PAO=0;PQA=0;PQR=0;PRO=0;QA=139;QR=1257;RO=38;RPL=0;RPP=11.6962;RPPR=85.5263;RPR=4;RUN=1;SAF=0;SAP=11.6962;SAR=4;SRF=3;SRP=61.5258;SRR=35;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:17:14,3:14:461:3:104:-4.58558,0,-36.3073 0/0:15:14,1:14:467:1:35:0,-1.01682,-37.7335 0/0:10:10,0:10:329:0:0:0,-3.0103,-27.8378 dDocent_Contig_12433 21 . G A 73.4085 . AB=0.133333;ABP=160.659;AC=1;AF=0.166667;AN=6;AO=35;CIGAR=1X;DP=494;DPB=494;DPRA=0;EPP=79.0118;EPPR=997.545;GTI=0;LEN=1;MEANALT=1.33333;MQM=30.8571;MQMR=59.0306;NS=3;NUMALT=1;ODDS=0;PAIRED=0;PAIREDR=0.655022;PAO=0;PQA=0;PQR=0;PRO=0;QA=1403;QR=18187;RO=458;RPL=0;RPP=79.0118;RPPR=997.545;RPR=35;RUN=1;SAF=35;SAP=79.0118;SAR=0;SRF=458;SRP=997.545;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:216:205,11:205:8118:11:437:0,-35.8835,-700.452 0/1:135:117,18:117:4639:18:728:-9.16476,0,-376.571 0/0:143:136,6:136:5430:6:238:0,-25.9774,-470.906 dDocent_Contig_12434 10 . G A 4325.52 . AB=0.49505;ABP=3.0748;AC=3;AF=0.5;AN=6;AO=150;CIGAR=1X;DP=303;DPB=303;DPRA=0;EPP=328.731;EPPR=333.074;GTI=0;LEN=1;MEANALT=1.33333;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=5875;QR=6041;RO=152;RPL=0;RPP=328.731;RPPR=333.074;RPR=150;RUN=1;SAF=150;SAP=328.731;SAR=0;SRF=152;SRP=333.074;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:205:95,110:95:3778:110:4294:-324.731,0,-278.32 0/1:18:12,6:12:483:6:237:-16.2835,0,-38.4027 0/1:80:45,34:45:1780:34:1344:-97.0599,0,-136.253 dDocent_Contig_12435 13 . G A 1396.31 . AB=0.520548;ABP=3.27802;AC=4;AF=0.666667;AN=6;AO=38;CIGAR=1X5M;DP=73;DPB=73;DPRA=0;EPP=85.5263;EPPR=31.2394;GTI=0;LEN=1;MEANALT=2.66667;MQM=60;MQMR=60;NS=3;NUMALT=4;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=1491;QR=515;RO=13;RPL=0;RPP=85.5263;RPPR=31.2394;RPR=38;RUN=1;SAF=38;SAP=85.5263;SAR=0;SRF=13;SRP=31.2394;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|1:31:7,0,3,6,15:7:275:0,3,6,15:0,119,236,603:-47.5894,-49.6966,-72.314,-39.9013,-62.5184,-61.6153,-30.2866,-52.9031,-43.1077,-51.0969,0,-22.618,-12.8217,-3.20637,-18.1026 1|1:24:0,4,8,0,12:0:0:4,8,0,12:154,320,0,464:-64.5715,-56.1864,-54.9823,-38.1973,-29.8212,-35.7891,-64.5715,-56.1864,-38.1973,-64.5715,-26.4483,-18.0866,0,-26.4483,-22.8359 0|1:18:6,0,0,1,11:6:240:0,0,1,11:0,0,40,424:-32.9933,-34.7995,-54.5744,-34.7995,-54.5744,-54.5744,-31.5032,-51.2788,-51.2788,-50.9777,0,-19.7705,-19.7705,-16.4754,-16.4592 dDocent_Contig_12436 26 . A G 702.99 . AB=0.117647;ABP=46.1843;AC=0;AF=0;AN=6;AO=4;CIGAR=1M1I3M1X2M1X2M1X5M;DP=45;DPB=37.1875;DPRA=0;EPP=11.6962;EPPR=33.4109;GTI=0;LEN=1;MEANALT=2.5;MQM=33;MQMR=60;NS=3;NUMALT=2;ODDS=0;PAIRED=0;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=132;QR=550;RO=14;RPL=0;RPP=11.6962;RPPR=33.4109;RPR=4;RUN=1;SAF=4;SAP=11.6962;SAR=0;SRF=14;SRP=33.4109;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|0:21:7,3,11:7:273:3,11:99,404:-30.9651,-25.8923,-47.4373,0,-15.3346,-19.1907 0|0:11:6,0,5:6:237:0,5:0,178:-13.0537,-14.8599,-34.3835,0,-19.897,-18.3919 0|0:13:1,1,10:1:40:1,10:33,371:-30.1227,-28.0307,-31.028,0,-0.94677,-0.322989 dDocent_Contig_12437 19 . A T 82.5916 . AB=0.130435;ABP=84.8654;AC=2;AF=0.333333;AN=6;AO=9;CIGAR=1X;DP=76;DPB=76;DPRA=4.92857;EPP=22.5536;EPPR=148.499;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=353;QR=2652;RO=67;RPL=0;RPP=22.5536;RPPR=148.499;RPR=9;RUN=1;SAF=9;SAP=22.5536;SAR=0;SRF=67;SRP=148.499;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:41:35,6:35:1379:6:234:-9.08618,0,-112.023 0/0:7:7,0:7:278:0:0:0,-2.10721,-25.3897 0/1:28:25,3:25:995:3:119:-2.66566,0,-81.4197 dDocent_Contig_12438 17 . T G 31.5305 . AB=0.222222;ABP=9.04217;AC=1;AF=0.166667;AN=6;AO=5;CIGAR=1X;DP=55;DPB=55;DPRA=6.375;EPP=13.8677;EPPR=111.584;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=204;QR=2017;RO=50;RPL=0;RPP=13.8677;RPPR=111.584;RPR=5;RUN=1;SAF=5;SAP=13.8677;SAR=0;SRF=50;SRP=111.584;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:42:39,3:39:1569:3:123:0,-1.17847,-129.976 0/0:4:4,0:4:162:0:0:0,-1.20412,-14.967 0/1:9:7,2:7:286:2:81:-4.97646,0,-23.4055 dDocent_Contig_12439 29 . C T 301.391 . AB=0.236842;ABP=25.8679;AC=3;AF=0.500001;AN=6;AO=9;CIGAR=1X5M;DP=49;DPB=49;DPRA=0;EPP=22.5536;EPPR=42.0968;GTI=0;LEN=1;MEANALT=3.5;MQM=60;MQMR=60;NS=3;NUMALT=5;ODDS=0;PAIRED=0.666667;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=365;QR=711;RO=18;RPL=0;RPP=22.5536;RPPR=42.0968;RPR=9;RUN=1;SAF=9;SAP=22.5536;SAR=0;SRF=18;SRP=42.0968;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|1:15:6,0,4,1,1,3:6:239:0,4,1,1,3:0,160,41,41,123:-8.25454,-10.0607,-29.7643,0,-19.6993,-18.4952,-8.13306,-27.8333,-17.7734,-27.5322,-6.66822,-26.377,-16.3125,-24.4464,-26.076,-0.444034,-20.1649,-10.1037,-18.2355,-16.7762,-19.2618 0|1:11:5,3,1,1,0,0:5:194:3,1,1,0,0:118,40,40,0,0:-2.67046,0,-15.1096,-1.63742,-13.4955,-17.363,-2.23507,-14.0894,-15.733,-17.9542,-4.17561,-16.0126,-17.6641,-18.2552,-20.1868,-4.17561,-16.0126,-17.6641,-18.2552,-20.1868,-20.1868 0|1:23:7,0,3,5,8,0:7:278:0,3,5,8,0:0,115,202,324,0:-24.6575,-26.7648,-49.6642,-19.3122,-42.2098,-41.3067,-14.4613,-37.3555,-29.9074,-35.8503,0,-22.9284,-15.4751,-10.6238,-20.5202,-26.7648,-49.6642,-42.2098,-37.3555,-22.9284,-49.6642 dDocent_Contig_12440 47 . C T 94.3533 . AB=0.294118;ABP=9.26925;AC=2;AF=0.5;AN=4;AO=5;CIGAR=1X;DP=17;DPB=17;DPRA=0;EPP=13.8677;EPPR=29.068;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=2;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=190;QR=480;RO=12;RPL=0;RPP=13.8677;RPPR=29.068;RPR=5;RUN=1;SAF=5;SAP=13.8677;SAR=0;SRF=12;SRP=29.068;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:10:6,4:6:239:4:152:-11.0392,0,-18.8747 0/1:7:6,1:6:241:1:38:-1.69006,0,-19.9597 ./.:.:.:.:.:.:.:. dDocent_Contig_12441 82 . A C 223.718 . AB=0.276596;ABP=23.3852;AC=2;AF=0.333333;AN=6;AO=15;CIGAR=1X;DP=63;DPB=63;DPRA=0;EPP=35.5824;EPPR=105.07;GTI=0;LEN=1;MEANALT=1.33333;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=478;QR=1615;RO=47;RPL=15;RPP=35.5824;RPPR=105.07;RPR=0;RUN=1;SAF=15;SAP=35.5824;SAR=0;SRF=47;SRP=105.07;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:41:29,11:29:991:11:368:-21.0531,0,-77.1092 0/1:6:4,2:4:140:2:70:-4.84122,0,-11.1387 0/0:16:14,2:14:484:2:40:0,-1.01778,-40.091 dDocent_Contig_12442 55 . T C 103.421 . AB=0.444444;ABP=3.25157;AC=1;AF=0.166667;AN=6;AO=4;CIGAR=1X;DP=22;DPB=22;DPRA=1.38462;EPP=11.6962;EPPR=42.0968;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=161;QR=694;RO=18;RPL=4;RPP=11.6962;RPPR=42.0968;RPR=0;RUN=1;SAF=4;SAP=11.6962;SAR=0;SRF=18;SRP=42.0968;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:6:6,0:6:230:0:0:0,-1.80618,-21.067 0/0:7:7,0:7:268:0:0:0,-2.10721,-24.4827 0/1:9:5,4:5:196:4:161:-12.166,0,-15.3056 dDocent_Contig_12443 109 . C A 177.648 . AB=0.294118;ABP=15.5282;AC=2;AF=0.333333;AN=6;AO=10;CIGAR=1X;DP=73;DPB=73;DPRA=0.435897;EPP=24.725;EPPR=139.813;GTI=0;LEN=1;MEANALT=1;MQM=50.8;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=0;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=345;QR=2034;RO=63;RPL=0;RPP=24.725;RPPR=139.813;RPR=10;RUN=1;SAF=0;SAP=24.725;SAR=10;SRF=0;SRP=139.813;SRR=63;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:25:21,4:21:713:4:139:-5.30857,0,-56.9618 0/0:39:39,0:39:1217:0:0:0,-11.7402,-109.808 0/1:9:3,6:3:104:6:206:-15.979,0,-6.99382 dDocent_Contig_12444 119 . C T 78.8143 . AB=0.444444;ABP=3.25157;AC=1;AF=0.166667;AN=6;AO=4;CIGAR=1X;DP=25;DPB=25;DPRA=1.125;EPP=11.6962;EPPR=48.6112;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=8.67362e-19;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=131;QR=727;RO=21;RPL=0;RPP=11.6962;RPPR=48.6112;RPR=4;RUN=1;SAF=0;SAP=11.6962;SAR=4;SRF=0;SRP=48.6112;SRR=21;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:9:5,4:5:175:4:131:-9.40427,0,-13.3844 0/0:11:11,0:11:379:0:0:0,-3.31133,-34.4418 0/0:5:5,0:5:173:0:0:0,-1.50515,-15.9102 dDocent_Contig_12445 10 . G A 822.721 . AB=0.164319;ABP=419.953;AC=3;AF=0.5;AN=6;AO=70;CIGAR=1X;DP=426;DPB=426;DPRA=0;EPP=155.013;EPPR=687.306;GTI=0;LEN=1;MEANALT=1.33333;MQM=37.6143;MQMR=58.4831;NS=3;NUMALT=1;ODDS=0;PAIRED=0.0571429;PAIREDR=0.460452;PAO=0;PQA=0;PQR=0;PRO=0;QA=2696;QR=14090;RO=354;RPL=0;RPP=155.013;RPPR=771.712;RPR=70;RUN=1;SAF=70;SAP=155.013;SAR=0;SRF=344;SRP=687.306;SRR=10;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:219:183,36:183:7321:36:1409:-45.5243,0,-588.516 0/1:105:91,12:91:3557:12:452:-6.00382,0,-286.294 0/1:102:80,22:80:3212:22:835:-36.2668,0,-255.702 dDocent_Contig_12447 162 . C T 37.6511 . AB=0.16;ABP=28.1125;AC=2;AF=0.333333;AN=6;AO=4;CIGAR=1X;DP=29;DPB=29;DPRA=3.125;EPP=11.6962;EPPR=57.2971;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=0.92;PAO=0;PQA=0;PQR=0;PRO=0;QA=156;QR=894;RO=25;RPL=4;RPP=11.6962;RPPR=57.2971;RPR=0;RUN=1;SAF=0;SAP=11.6962;SAR=4;SRF=0;SRP=57.2971;SRR=25;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:13:11,2:11:370:2:78:-3.48991,0,-29.7034 0/0:4:4,0:4:149:0:0:0,-1.20412,-13.7725 0/1:12:10,2:10:375:2:78:-3.79094,0,-30.4885 dDocent_Contig_12450 13 . T A 32.5118 . AB=0.142857;ABP=26.2761;AC=1;AF=0.166667;AN=6;AO=3;CIGAR=1X2M1X;DP=36;DPB=36;DPRA=2.8;EPP=9.52472;EPPR=74.6689;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=0.333333;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=119;QR=1259;RO=33;RPL=0;RPP=9.52472;RPPR=74.6689;RPR=3;RUN=1;SAF=3;SAP=9.52472;SAR=0;SRF=33;SRP=74.6689;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|1:21:18,3:18:690:3:119:-4.77376,0,-56.1107 0|0:5:5,0:5:193:0:0:0,-1.50515,-17.7409 0|0:10:10,0:10:376:0:0:0,-3.0103,-34.1892 dDocent_Contig_12453 13 . C A 64.9585 . AB=0.28;ABP=13.5202;AC=2;AF=0.333333;AN=6;AO=7;CIGAR=1X2M1X;DP=30;DPB=30;DPRA=2.5;EPP=18.2106;EPPR=50.7827;GTI=0;LEN=1;MEANALT=1.5;MQM=28.4286;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=0;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=232;QR=889;RO=22;RPL=0;RPP=18.2106;RPPR=50.7827;RPR=7;RUN=1;SAF=0;SAP=18.2106;SAR=7;SRF=22;SRP=50.7827;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|1:11:7,4:7:285:4:135:-6.87305,0,-22.7131 0|0:5:5,0:5:201:0:0:0,-1.50515,-18.4709 0|1:14:10,3:10:403:3:97:-3.13515,0,-32.3079 dDocent_Contig_12454 48 . A G 138.707 . AB=0.214286;ABP=12.937;AC=3;AF=0.5;AN=6;AO=4;CIGAR=1X4M;DP=40;DPB=40;DPRA=0;EPP=11.6962;EPPR=68.1545;GTI=0;LEN=1;MEANALT=2;MQM=60;MQMR=60;NS=3;NUMALT=2;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=149;QR=1190;RO=30;RPL=4;RPP=11.6962;RPPR=68.1545;RPR=0;RUN=1;SAF=4;SAP=11.6962;SAR=0;SRF=30;SRP=68.1545;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|0:26:24,1,1:24:948:1,1:40,34:0,-3.8998,-81.657,-4.49657,-79.2023,-82.1965 1|1:2:0,1,1:0:0:1,1:40,41:-7.08367,-3.79354,-3.49251,-3.69465,0,-3.39362 0|1:12:6,4,2:6:242:4,2:148,74:-10.2995,0,-18.769,-6.05257,-13.9283,-25.4187 dDocent_Contig_12455 7 . A T 304.297 . AB=0.184783;ABP=82.4107;AC=1;AF=0.166667;AN=6;AO=17;CIGAR=1X;DP=136;DPB=136;DPRA=4.18182;EPP=39.9253;EPPR=261.416;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=58.7227;NS=3;NUMALT=1;ODDS=6.93889e-18;PAIRED=1;PAIREDR=0.966387;PAO=0;PQA=0;PQR=0;PRO=0;QA=659;QR=4554;RO=119;RPL=0;RPP=39.9253;RPPR=261.416;RPR=17;RUN=1;SAF=17;SAP=39.9253;SAR=0;SRF=119;SRP=261.416;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:92:75,17:75:2861:17:659:-31.9525,0,-226.894 0/0:15:15,0:15:575:0:0:0,-4.51545,-48.9981 0/0:29:29,0:29:1118:0:0:0,-8.72987,-100.922 dDocent_Contig_12456 14 . T C 248.249 . AB=0.37037;ABP=6.95112;AC=2;AF=0.333333;AN=6;AO=10;CIGAR=1X;DP=32;DPB=32;DPRA=2.7;EPP=6.48466;EPPR=28.2783;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=0.1;PAIREDR=0.727273;PAO=0;PQA=0;PQR=0;PRO=0;QA=379;QR=849;RO=22;RPL=0;RPP=24.725;RPPR=50.7827;RPR=10;RUN=1;SAF=7;SAP=6.48466;SAR=3;SRF=19;SRP=28.2783;SRR=3;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:15:6,9:6:244:9:339:-26.3442,0,-17.8234 0/1:12:11,1:11:409:1:40:-0.383319,0,-33.5375 0/0:5:5,0:5:196:0:0:0,-1.50515,-18.0114 dDocent_Contig_12457 7 . A G 1225.99 . AB=0.266667;ABP=123.599;AC=3;AF=0.5;AN=6;AO=68;CIGAR=1X;DP=255;DPB=255;DPRA=0;EPP=49.1222;EPPR=347.821;GTI=0;LEN=1;MEANALT=1.33333;MQM=57.5441;MQMR=58.9505;NS=3;NUMALT=1;ODDS=0;PAIRED=0.75;PAIREDR=0.961538;PAO=0;PQA=0;PQR=0;PRO=0;QA=2274;QR=6955;RO=182;RPL=0;RPP=150.67;RPPR=398.218;RPR=68;RUN=1;SAF=53;SAP=49.1222;SAR=15;SRF=176;SRP=347.821;SRR=6;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:143:105,33:105:4004:33:1101:-55.7569,0,-317.525 0/1:36:22,14:22:837:14:485:-33.1348,0,-64.3814 0/1:76:55,21:55:2114:21:688:-39.2306,0,-164.413 dDocent_Contig_12458 1 . N T 870.713 . AB=0;ABP=0;AC=6;AF=1;AN=6;AO=27;CIGAR=1X;DP=27;DPB=27;DPRA=0;EPP=61.6401;EPPR=0;GTI=0;LEN=1;MEANALT=1;MQM=51.963;MQMR=0;NS=3;NUMALT=1;ODDS=0;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=963;QR=0;RO=0;RPL=0;RPP=61.6401;RPPR=0;RPR=27;RUN=1;SAF=0;SAP=61.6401;SAR=27;SRF=0;SRP=0;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 1/1:13:0,13:0:0:13:486:-43.177,-3.91339,0 1/1:1:0,1:0:0:1:39:-3.85861,-0.30103,0 1/1:13:0,13:0:0:13:438:-39.5578,-3.91339,0 dDocent_Contig_12459 60 . A T 236.194 . AB=0.157895;ABP=22.325;AC=3;AF=0.5;AN=6;AO=9;CIGAR=1X1M12D1M;DP=47;DPB=39.8;DPRA=0.568182;EPP=22.5536;EPPR=85.5263;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=0.666667;PAIREDR=0.973684;PAO=0;PQA=0;PQR=0;PRO=0;QA=335;QR=1376;RO=38;RPL=3;RPP=5.18177;RPPR=3.23888;RPR=6;RUN=1;SAF=3;SAP=5.18177;SAR=6;SRF=20;SRP=3.23888;SRR=18;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|0:22:22,0:22:800:0:0:0,-6.62266,-72.3231 1|1:6:0,6:0:0:6:230:-21.0647,-1.80618,0 0|1:19:16,3:16:576:3:105:-4.0764,0,-46.4535 dDocent_Contig_12460 16 . A G 113.241 . AB=0.149254;ABP=74.6041;AC=3;AF=0.5;AN=6;AO=10;CIGAR=1X;DP=67;DPB=67;DPRA=0;EPP=24.725;EPPR=126.784;GTI=0;LEN=1;MEANALT=1;MQM=57.5;MQMR=60;NS=3;NUMALT=1;ODDS=3.46945e-18;PAIRED=0.7;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=394;QR=2270;RO=57;RPL=0;RPP=24.725;RPPR=126.784;RPR=10;RUN=1;SAF=10;SAP=24.725;SAR=0;SRF=57;SRP=126.784;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:24:19,5:19:762:5:193:-10.5144,0,-61.6743 0/1:34:31,3:31:1224:3:120:-0.95229,0,-100.201 0/1:9:7,2:7:284:2:81:-4.31919,0,-23.2241 dDocent_Contig_12461 31 . T C 217.259 . AB=0.290323;ABP=14.8483;AC=1;AF=0.166667;AN=6;AO=12;CIGAR=1X;DP=118;DPB=118;DPRA=1.23529;EPP=29.068;EPPR=233.186;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=0.990566;PAO=0;PQA=0;PQR=0;PRO=0;QA=481;QR=4238;RO=106;RPL=0;RPP=29.068;RPPR=233.186;RPR=12;RUN=1;SAF=12;SAP=29.068;SAR=0;SRF=106;SRP=233.186;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:31:22,9:22:880:9:358:-23.2487,0,-70.1751 0/0:53:50,3:50:1983:3:123:0,-4.4898,-167.196 0/0:34:34,0:34:1375:0:0:0,-10.235,-124.003 dDocent_Contig_12462 9 . G A 340.589 . AB=0.102041;ABP=137.819;AC=1;AF=0.166667;AN=6;AO=10;CIGAR=1M1X7M;DP=98;DPB=98;DPRA=0;EPP=24.725;EPPR=152.842;GTI=0;LEN=1;MEANALT=3.33333;MQM=60;MQMR=58.4348;NS=3;NUMALT=4;ODDS=0;PAIRED=0;PAIREDR=0.376812;PAO=0;PQA=0;PQR=0;PRO=0;QA=377;QR=2693;RO=69;RPL=0;RPP=24.725;RPPR=152.842;RPR=10;RUN=1;SAF=10;SAP=24.725;SAR=0;SRF=69;SRP=152.842;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|0:21:15,0,4,2,0:15:584:0,4,2,0:0,156,78,0:-8.26562,-12.7811,-56.402,0,-43.5766,-42.3725,-6.37933,-49.9883,-37.1619,-49.3863,-12.7811,-56.402,-43.5766,-49.9883,-56.402 0|0:38:25,9,0,2,1:25:958:9,0,2,1:346,0,66,37:-20.8997,0,-75.9368,-28.4254,-78.646,-107.053,-23.099,-73.315,-101.721,-101.119,-25.3989,-75.6193,-104.026,-98.6943,-103.725 0|1:39:29,0,0,6,2:29:1151:0,0,6,2:0,0,233,77:-10.4165,-19.1464,-113.906,-19.1464,-113.906,-113.906,0,-94.7617,-94.7617,-92.9555,-12.8257,-107.586,-107.586,-88.4409,-106.983 dDocent_Contig_12463 10 . C T 115.343 . AB=0.4;ABP=3.44459;AC=2;AF=0.333334;AN=6;AO=2;CIGAR=1X3M;DP=21;DPB=21;DPRA=0.625;EPP=7.35324;EPPR=37.7539;GTI=0;LEN=1;MEANALT=2;MQM=60;MQMR=60;NS=3;NUMALT=2;ODDS=0;PAIRED=0;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=76;QR=639;RO=16;RPL=0;RPP=7.35324;RPPR=37.7539;RPR=2;RUN=1;SAF=2;SAP=7.35324;SAR=0;SRF=16;SRP=37.7539;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|0:9:9,0,0:9:354:0,0:0,0:0,-2.70927,-32.22,-2.70927,-32.22,-32.22 1|1:5:0,3,2:0:0:3,2:117,76:-13.3582,-6.61261,-5.70952,-7.08754,0,-6.48548 0|0:7:7,0,0:7:285:0,0:0,0:0,-2.10721,-26.0244,-2.10721,-26.0244,-26.0244 dDocent_Contig_12464 8 . T G 3355.18 . AB=0.627119;ABP=27.8534;AC=4;AF=0.666667;AN=6;AO=111;CIGAR=1M1X4M;DP=177;DPB=177;DPRA=0;EPP=244.044;EPPR=107.241;GTI=0;LEN=1;MEANALT=3.33333;MQM=59.5135;MQMR=60;NS=3;NUMALT=4;ODDS=0;PAIRED=0.981982;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=4268;QR=1869;RO=48;RPL=0;RPP=244.044;RPPR=107.241;RPR=111;RUN=1;SAF=111;SAP=244.044;SAR=0;SRF=48;SRP=107.241;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|1:87:28,2,0,5,50:28:1086:2,0,5,50:80,0,187,1934:-150.443,-152.811,-241.434,-158.872,-242.036,-248.097,-143.561,-226.724,-232.786,-231.281,0,-83.1726,-89.2335,-73.9227,-74.182 1|1:26:1,2,3,0,20:1:39:2,3,0,20:76,107,0,771:-68.53,-62.7361,-65.3402,-60.1125,-57.224,-62.4155,-68.8311,-65.9423,-63.3186,-72.0373,-5.50078,-2.61296,0,-8.71114,-2.69054 0|1:64:19,0,0,3,41:19:744:0,0,3,41:0,0,109,1563:-122.039,-127.759,-188.941,-127.759,-188.941,-188.941,-118.859,-180.041,-180.041,-179.138,0,-61.1963,-61.1963,-52.2997,-48.8541 dDocent_Contig_12466 12 . G A 389.483 . AB=0.0813008;ABP=190.304;AC=1;AF=0.166667;AN=6;AO=15;CIGAR=1X1M1X;DP=245;DPB=245;DPRA=0;EPP=35.5824;EPPR=426.447;GTI=0;LEN=1;MEANALT=3;MQM=60;MQMR=60;NS=3;NUMALT=2;ODDS=2.77556e-17;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=605;QR=7733;RO=195;RPL=0;RPP=35.5824;RPPR=426.447;RPR=15;RUN=1;SAF=15;SAP=35.5824;SAR=0;SRF=195;SRP=426.447;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|0:122:104,5,8:104:4102:5,8:201,301:0,-14.73,-350.739,-10.2828,-331.191,-345.347 0|0:61:42,3,15:42:1669:3,15:122,589:-33.9785,-36.5544,-173.067,0,-127.333,-132.881 0|1:62:49,7,6:49:1962:7,6:282,242:-8.49264,0,-159.517,-3.29461,-141.676,-163.113 dDocent_Contig_12467 11 . T C 147.671 . AB=0.2;ABP=22.5536;AC=1;AF=0.166667;AN=6;AO=5;CIGAR=2X;DP=41;DPB=41;DPRA=0;EPP=13.8677;EPPR=72.4974;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=2;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=196;QR=1276;RO=32;RPL=0;RPP=13.8677;RPPR=72.4974;RPR=5;RUN=1;SAF=5;SAP=13.8677;SAR=0;SRF=32;SRP=72.4974;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|1:25:20,5,0:20:796:5,0:196,0:-10.4886,0,-64.4325,-16.5092,-65.9376,-82.054 0|0:5:3,0,2:3:121:0,2:0,77:-5.80305,-6.70614,-16.6913,0,-10.3771,-9.77505 0|0:11:9,0,2:9:359:0,2:0,77:-3.99687,-6.70614,-36.2836,0,-29.9646,-29.3625 dDocent_Contig_12468 28 . A C 355.151 . AB=0.189873;ABP=69.0066;AC=2;AF=0.333334;AN=6;AO=15;CIGAR=1X1M1D1M1X;DP=84;DPB=78.4;DPRA=7.9;EPP=35.5824;EPPR=124.613;GTI=0;LEN=1;MEANALT=3;MQM=60;MQMR=60;NS=3;NUMALT=3;ODDS=0;PAIRED=0.733333;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=591;QR=2181;RO=56;RPL=0;RPP=35.5824;RPPR=124.613;RPR=15;RUN=1;SAF=15;SAP=35.5824;SAR=0;SRF=56;SRP=124.613;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|1:48:32,3,11,2:32:1239:3,11,2:117,430,82:-25.7137,-25.7308,-126.597,0,-92.1477,-98.4531,-28.5761,-120.731,-94.9951,-129.745 0|0:5:5,0,0,0:5:196:0,0,0:0,0,0:0,-1.50515,-18.0152,-1.50515,-18.0152,-18.0152,-1.50515,-18.0152,-18.0152,-18.0152 0|1:31:19,6,4,2:19:746:6,4,2:232,161,81:-13.3241,0,-59.5411,-5.77062,-48.0766,-65.9229,-12.3625,-54.6673,-60.4468,-73.1156 dDocent_Contig_12469 27 . A T 590.859 . AB=0.0862069;ABP=89.2702;AC=0;AF=0;AN=6;AO=5;CIGAR=1M8I1M2X3M1X;DP=62;DPB=101.5;DPRA=7.25;EPP=13.8677;EPPR=72.4974;GTI=0;LEN=1;MEANALT=3.5;MQM=59.4;MQMR=60;NS=3;NUMALT=2;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=201;QR=1265;RO=32;RPL=0;RPP=13.8677;RPPR=72.4974;RPR=5;RUN=1;SAF=5;SAP=13.8677;SAR=0;SRF=32;SRP=72.4974;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|0:32:19,10,2:19:750:10,2:385,82:-25.9456,0,-58.7751,-24.8893,-55.0146,-86.0215 0|0:4:4,0,0:4:159:0,0:0,0:0,-1.20412,-14.6923,-1.20412,-14.6923,-14.6923 0|0:26:9,12,3:9:356:12,3:478,119:-36.6631,0,-25.6938,-29.5786,-19.5115,-57.975 dDocent_Contig_12471 16 . T A 438.091 . AB=0.279412;ABP=31.7504;AC=3;AF=0.5;AN=6;AO=19;CIGAR=1X;DP=68;DPB=68;DPRA=0;EPP=44.2683;EPPR=109.412;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=763;QR=1977;RO=49;RPL=0;RPP=44.2683;RPPR=109.412;RPR=19;RUN=1;SAF=19;SAP=44.2683;SAR=0;SRF=49;SRP=109.412;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:47:33,14:33:1330:14:559:-36.5014,0,-105.808 0/1:6:4,2:4:156:2:82:-5.9735,0,-12.6088 0/1:15:12,3:12:491:3:122:-6.85704,0,-40.0255 dDocent_Contig_12473 16 . A G 2331.12 . AB=0.0612245;ABP=166.89;AC=0;AF=0;AN=6;AO=6;CIGAR=2X1M1X6M;DP=170;DPB=170;DPRA=0;EPP=16.0391;EPPR=109.412;GTI=0;LEN=1;MEANALT=4;MQM=60;MQMR=60;NS=3;NUMALT=5;ODDS=0;PAIRED=1;PAIREDR=0.979592;PAO=0;PQA=0;PQR=0;PRO=0;QA=235;QR=1946;RO=49;RPL=0;RPP=16.0391;RPPR=109.412;RPR=6;RUN=1;SAF=6;SAP=16.0391;SAR=0;SRF=49;SRP=109.412;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|0:98:39,0,11,2,6,40:39:1549:0,11,2,6,40:0,434,77,235,1619:-121.759,-133.499,-261.022,-97.791,-225.313,-222.002,-127.178,-254.701,-218.992,-254.099,-114.178,-241.701,-205.992,-235.379,-239.894,0,-127.527,-91.8181,-121.206,-108.206,-115.486 0|0:29:2,4,4,0,0,19:2:78:4,4,0,0,19:159,160,0,0,766:-69.3107,-56.8224,-62.0288,-56.7327,-50.0529,-61.9392,-69.9127,-63.233,-63.1434,-76.3235,-69.9127,-63.233,-63.1434,-76.3235,-76.3235,-6.77245,-0.0908552,0,-13.1823,-13.1823,-7.46274 0|0:43:8,3,9,10,0,13:8:319:3,9,10,0,13:120,359,400,0,524:-47.4611,-39.9842,-65.3518,-20.305,-36.6903,-43.8661,-16.92,-33.3054,-13.6261,-40.1802,-49.8694,-66.2549,-46.5754,-43.1905,-76.1401,-6.67913,-23.0647,-3.38513,0,-32.95,-29.0366 dDocent_Contig_12474 41 . A C 135.053 . AB=0.205882;ABP=28.557;AC=2;AF=0.333333;AN=6;AO=7;CIGAR=1X;DP=49;DPB=49;DPRA=1.13333;EPP=18.2106;EPPR=94.2121;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=287;QR=1682;RO=42;RPL=0;RPP=18.2106;RPPR=94.2121;RPR=7;RUN=1;SAF=7;SAP=18.2106;SAR=0;SRF=42;SRP=94.2121;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:25:19,6:19:765:6:246:-14.9944,0,-61.6444 0/0:15:15,0:15:592:0:0:0,-4.51545,-53.618 0/1:9:8,1:8:325:1:41:-1.3853,0,-26.9102 dDocent_Contig_12475 8 . T G 5066.71 . AB=0.751445;ABP=98.0154;AC=4;AF=0.666667;AN=6;AO=167;CIGAR=1X;DP=213;DPB=213;DPRA=0;EPP=365.646;EPPR=102.898;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=0.982036;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=6361;QR=1748;RO=46;RPL=0;RPP=365.646;RPPR=102.898;RPR=167;RUN=1;SAF=167;SAP=365.646;SAR=0;SRF=46;SRP=102.898;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:118:35,83:35:1324:83:3168:-249.753,0,-83.926 0/1:55:8,47:8:307:47:1797:-145.429,0,-11.435 1/1:40:3,37:3:117:37:1396:-115.012,-1.13082,0 dDocent_Contig_12476 18 . C T 225.559 . AB=0.154545;ABP=117.032;AC=3;AF=0.5;AN=6;AO=17;CIGAR=1X;DP=110;DPB=110;DPRA=0;EPP=39.9253;EPPR=204.957;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=0.935484;PAO=0;PQA=0;PQR=0;PRO=0;QA=667;QR=3677;RO=93;RPL=0;RPP=39.9253;RPPR=204.957;RPR=17;RUN=1;SAF=17;SAP=39.9253;SAR=0;SRF=93;SRP=204.957;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:66:59,7:59:2346:7:271:-4.8812,0,-191.441 0/1:5:4,1:4:152:1:40:-2.49053,0,-12.5428 0/1:39:30,9:30:1179:9:356:-20.6624,0,-94.6524 dDocent_Contig_12477 8 . T C 222.722 . AB=0.224138;ABP=41.348;AC=3;AF=0.5;AN=6;AO=13;CIGAR=1X1M;DP=58;DPB=58;DPRA=0;EPP=31.2394;EPPR=96.3836;GTI=0;LEN=1;MEANALT=1.33333;MQM=60;MQMR=60;NS=3;NUMALT=2;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=488;QR=1628;RO=43;RPL=0;RPP=31.2394;RPPR=96.3836;RPR=13;RUN=1;SAF=13;SAP=31.2394;SAR=0;SRF=43;SRP=96.3836;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|1:29:22,0,7:22:838:0,7:0,264:-15.3897,-22.0124,-90.7532,0,-69.1186,-67.0113 0|1:9:7,0,2:7:257:0,2:0,74:-4.31661,-6.42382,-27.4286,0,-21.3739,-20.7719 0|1:20:14,2,4:14:533:2,4:70,150:-8.08802,-6.61639,-49.7377,0,-38.0552,-42.5416 dDocent_Contig_12478 19 . A T 140.316 . AB=0.195122;ABP=36.112;AC=1;AF=0.166667;AN=6;AO=8;CIGAR=1X;DP=85;DPB=85;DPRA=1.86364;EPP=20.3821;EPPR=170.214;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=306;QR=3052;RO=77;RPL=0;RPP=20.3821;RPPR=170.214;RPR=8;RUN=1;SAF=8;SAP=20.3821;SAR=0;SRF=77;SRP=170.214;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:41:33,8:33:1315:8:306:-15.5545,0,-106.272 0/0:17:17,0:17:675:0:0:0,-5.11751,-61.0802 0/0:27:27,0:27:1062:0:0:0,-8.12781,-95.8674 dDocent_Contig_12480 12 . A T 130.109 . AB=0.149254;ABP=74.6041;AC=2;AF=0.333333;AN=6;AO=11;CIGAR=1X;DP=85;DPB=85;DPRA=0;EPP=26.8965;EPPR=163.699;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=6.93889e-18;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=440;QR=2934;RO=74;RPL=0;RPP=26.8965;RPPR=163.699;RPR=11;RUN=1;SAF=11;SAP=26.8965;SAR=0;SRF=74;SRP=163.699;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:51:46,5:46:1839:5:195:-2.56873,0,-150.366 0/0:18:17,1:17:655:1:41:0,-1.32397,-55.183 0/1:16:11,5:11:440:5:204:-13.9276,0,-35.1362 dDocent_Contig_12482 136 . A G 38.7961 . AB=0.285714;ABP=5.80219;AC=1;AF=0.25;AN=4;AO=2;CIGAR=1X;DP=18;DPB=18;DPRA=0.636364;EPP=7.35324;EPPR=37.7539;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=2;NUMALT=1;ODDS=0;PAIRED=0;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=81;QR=642;RO=16;RPL=0;RPP=7.35324;RPPR=37.7539;RPR=2;RUN=1;SAF=0;SAP=7.35324;SAR=2;SRF=0;SRP=37.7539;SRR=16;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:7:5,2:5:201:2:81:-5.57852,0,-16.3633 ./.:.:.:.:.:.:.:. 0/0:11:11,0:11:441:0:0:0,-3.31133,-40.0457 dDocent_Contig_12484 32 . C T 260.942 . AB=0.2;ABP=69.4574;AC=3;AF=0.5;AN=6;AO=17;CIGAR=1X;DP=85;DPB=85;DPRA=0;EPP=39.9253;EPPR=150.67;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=615;QR=2586;RO=68;RPL=0;RPP=39.9253;RPPR=150.67;RPR=17;RUN=1;SAF=17;SAP=39.9253;SAR=0;SRF=68;SRP=150.67;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:32:29,3:29:1090:3:116:-1.18444,0,-88.7522 0/1:23:14,9:14:544:9:356:-25.4797,0,-42.3799 0/1:30:25,5:25:952:5:143:-4.11479,0,-76.954 dDocent_Contig_12485 118 . G T 100.395 . AB=0.238095;ABP=28.0339;AC=2;AF=0.333333;AN=6;AO=10;CIGAR=1X;DP=45;DPB=45;DPRA=7;EPP=24.725;EPPR=79.0118;GTI=0;LEN=1;MEANALT=1;MQM=59.6;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=285;QR=1179;RO=35;RPL=0;RPP=24.725;RPPR=79.0118;RPR=10;RUN=1;SAF=0;SAP=24.725;SAR=10;SRF=0;SRP=79.0118;SRR=35;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:28:22,6:22:750:6:180:-8.06711,0,-59.3882 0/0:3:3,0:3:95:0:0:0,-0.90309,-8.86398 0/1:14:10,4:10:334:4:105:-5.495,0,-26.1693 dDocent_Contig_12488 8 . T C 337.59 . AB=0.0833333;ABP=39.2015;AC=0;AF=0;AN=6;AO=2;CIGAR=2X3M1D8M1X;DP=47;DPB=45.3333;DPRA=0;EPP=7.35324;EPPR=44.2683;GTI=0;LEN=1;MEANALT=4;MQM=60;MQMR=60;NS=3;NUMALT=5;ODDS=0;PAIRED=0;PAIREDR=0.947368;PAO=0;PQA=0;PQR=0;PRO=0;QA=66;QR=747;RO=19;RPL=0;RPP=7.35324;RPPR=44.2683;RPR=2;RUN=1;SAF=2;SAP=7.35324;SAR=0;SRF=19;SRP=44.2683;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|0:24:11,2,0,0,8,2:11:432:2,0,0,8,2:66,0,0,305,77:-21.4518,-19.4363,-54.3737,-24.7632,-54.9757,-60.3051,-24.7632,-54.9757,-60.3051,-60.3051,0,-30.2305,-35.5571,-35.5571,-33.1489,-18.4378,-48.6533,-53.9822,-53.9822,-29.2341,-53.3802 0|0:8:2,0,4,0,0,0:2:78:0,4,0,0,0:0,109,0,0,0:-6.81481,-7.41687,-13.8521,0,-6.40528,-5.20116,-7.41687,-13.8521,-6.40528,-13.8521,-7.41687,-13.8521,-6.40528,-13.8521,-13.8521,-7.41687,-13.8521,-6.40528,-13.8521,-13.8521,-13.8521 0|0:15:6,0,1,4,3,0:6:237:0,1,4,3,0:0,38,156,108,0:-11.0152,-12.8214,-32.3476,-9.71624,-29.2464,-28.9454,0,-19.5577,-16.455,-18.3536,-4.82003,-24.3507,-21.2498,-11.5605,-23.4476,-12.8214,-32.3476,-29.2464,-19.5577,-24.3507,-32.3476 dDocent_Contig_12492 10 . C A 35.4978 . AB=0.2;ABP=14.7363;AC=1;AF=0.166667;AN=6;AO=3;CIGAR=1X1M2X;DP=99;DPB=99;DPRA=0.357143;EPP=9.52472;EPPR=209.3;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=55.0842;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=0.778947;PAO=0;PQA=0;PQR=0;PRO=0;QA=106;QR=3722;RO=95;RPL=0;RPP=9.52472;RPPR=209.3;RPR=3;RUN=1;SAF=3;SAP=9.52472;SAR=0;SRF=95;SRP=209.3;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|0:66:65,0:65:2562:0:0:0,-19.5669,-226.413 0|1:15:12,3:12:446:3:106:-5.37356,0,-34.2252 0|0:18:18,0:18:714:0:0:0,-5.41854,-63.249 dDocent_Contig_12493 74 . T G 434.771 . AB=0.285714;ABP=36.513;AC=3;AF=0.5;AN=6;AO=24;CIGAR=1X;DP=84;DPB=84;DPRA=0;EPP=55.1256;EPPR=133.299;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=0;PAIREDR=0.766667;PAO=0;PQA=0;PQR=0;PRO=0;QA=802;QR=2145;RO=60;RPL=24;RPP=55.1256;RPPR=133.299;RPR=0;RUN=1;SAF=24;SAP=55.1256;SAR=0;SRF=60;SRP=133.299;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:52:33,19:33:1179:19:625:-40.901,0,-90.7544 0/1:24:20,4:20:734:4:144:-6.08786,0,-59.159 0/1:8:7,1:7:232:1:33:-0.890895,0,-18.796 dDocent_Contig_12495 13 . T C 112.357 . AB=0.160714;ABP=59.0033;AC=3;AF=0.5;AN=6;AO=9;CIGAR=1X;DP=56;DPB=56;DPRA=0;EPP=22.5536;EPPR=105.07;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=359;QR=1891;RO=47;RPL=0;RPP=22.5536;RPPR=105.07;RPR=9;RUN=1;SAF=9;SAP=22.5536;SAR=0;SRF=47;SRP=105.07;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:33:28,5:28:1121:5:201:-8.53711,0,-91.2399 0/1:4:2,2:2:82:2:77:-6.10471,0,-6.57556 0/1:19:17,2:17:688:2:81:-1.96616,0,-56.5283 dDocent_Contig_12496 92 . G A 63.1026 . AB=0.175;ABP=39.7082;AC=2;AF=0.333333;AN=6;AO=7;CIGAR=1X;DP=45;DPB=45;DPRA=4;EPP=10.7656;EPPR=85.5263;GTI=0;LEN=1;MEANALT=1;MQM=53.2857;MQMR=60;NS=3;NUMALT=1;ODDS=3.46945e-18;PAIRED=0.857143;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=244;QR=1313;RO=38;RPL=7;RPP=18.2106;RPPR=85.5263;RPR=0;RUN=1;SAF=6;SAP=10.7656;SAR=1;SRF=38;SRP=85.5263;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:30:24,6:24:832:6:210:-7.82957,0,-66.1678 0/0:5:5,0:5:166:0:0:0,-1.50515,-15.2668 0/1:10:9,1:9:315:1:34:-0.388611,0,-25.6785 dDocent_Contig_12497 11 . A G 589.278 . AB=0.333333;ABP=20.3821;AC=3;AF=0.5;AN=6;AO=24;CIGAR=1X;DP=72;DPB=72;DPRA=0;EPP=55.1256;EPPR=105.07;GTI=0;LEN=1;MEANALT=1.33333;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=946;QR=1856;RO=47;RPL=0;RPP=55.1256;RPPR=105.07;RPR=24;RUN=1;SAF=24;SAP=55.1256;SAR=0;SRF=47;SRP=105.07;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:40:30,10:30:1188:10:400:-24.3155,0,-95.1574 0/1:22:13,8:13:508:8:313:-21.8085,0,-39.3425 0/1:10:4,6:4:160:6:233:-18.3266,0,-11.7731 dDocent_Contig_12499 107 . N T 334.192 . AB=0;ABP=0;AC=6;AF=1;AN=6;AO=11;CIGAR=1X;DP=11;DPB=11;DPRA=0;EPP=26.8965;EPPR=0;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=0;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=355;QR=0;RO=0;RPL=0;RPP=26.8965;RPPR=0;RPR=11;RUN=1;SAF=0;SAP=26.8965;SAR=11;SRF=0;SRP=0;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 1/1:7:0,7:0:0:7:216:-19.7413,-2.10721,0 1/1:2:0,2:0:0:2:70:-6.6474,-0.60206,0 1/1:2:0,2:0:0:2:69:-6.55266,-0.60206,0 dDocent_Contig_12501 57 . A G 264.709 . AB=0.3;ABP=16.9077;AC=1;AF=0.25;AN=4;AO=12;CIGAR=1X;DP=55;DPB=55;DPRA=2.66667;EPP=29.068;EPPR=96.3836;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=2;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=443;QR=1645;RO=43;RPL=12;RPP=29.068;RPPR=96.3836;RPR=0;RUN=1;SAF=12;SAP=29.068;SAR=0;SRF=43;SRP=96.3836;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:40:28,12:28:1052:12:443:-28.1699,0,-82.9407 ./.:.:.:.:.:.:.:. 0/0:15:15,0:15:593:0:0:0,-4.51545,-53.7117 dDocent_Contig_12502 10 . C T 281.059 . AB=0.37931;ABP=6.67934;AC=2;AF=0.333333;AN=6;AO=11;CIGAR=1X;DP=34;DPB=34;DPRA=2.9;EPP=26.8965;EPPR=52.9542;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=0.869565;PAO=0;PQA=0;PQR=0;PRO=0;QA=440;QR=890;RO=23;RPL=0;RPP=26.8965;RPPR=52.9542;RPR=11;RUN=1;SAF=11;SAP=26.8965;SAR=0;SRF=23;SRP=52.9542;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:19:11,8:11:413:8:318:-23.2665,0,-31.7824 0/0:5:5,0:5:201:0:0:0,-1.50515,-18.4711 0/1:10:7,3:7:276:3:122:-8.36219,0,-22.1962 dDocent_Contig_12503 31 . C T 211.322 . AB=0.22449;ABP=35.3165;AC=3;AF=0.5;AN=6;AO=11;CIGAR=1X;DP=49;DPB=49;DPRA=0;EPP=26.8965;EPPR=85.5263;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=434;QR=1532;RO=38;RPL=0;RPP=26.8965;RPPR=85.5263;RPR=11;RUN=1;SAF=11;SAP=26.8965;SAR=0;SRF=38;SRP=85.5263;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:34:26,8:26:1043:8:318:-18.7482,0,-83.9277 0/1:5:3,2:3:121:2:78:-5.89815,0,-9.77505 0/1:10:9,1:9:368:1:38:-0.786969,0,-30.4751 dDocent_Contig_12504 8 . T A 193.791 . AB=0.146341;ABP=47.552;AC=4;AF=0.666667;AN=6;AO=14;CIGAR=1X1M1X4M;DP=49;DPB=49;DPRA=0;EPP=33.4109;EPPR=55.1256;GTI=0;LEN=1;MEANALT=2;MQM=23.2857;MQMR=60;NS=3;NUMALT=2;ODDS=3.46945e-18;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=315;QR=948;RO=24;RPL=0;RPP=33.4109;RPPR=55.1256;RPR=14;RUN=1;SAF=14;SAP=33.4109;SAR=0;SRF=24;SRP=55.1256;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|1:27:18,7,1:18:711:7,1:259,35:-4.27682,0,-56.4247,-6.86158,-55.7152,-65.1933 1|1:8:0,0,8:0:0:0,8:0,104:-7.37294,-7.37294,-7.37294,-2.40824,-2.40824,0 0|1:14:6,3,5:6:237:3,5:119,176:-11.2514,-8.61913,-27.2584,0,-15.2134,-18.1276 dDocent_Contig_12505 49 . T A 92.0997 . AB=0.227273;ABP=17.2236;AC=1;AF=0.25;AN=4;AO=6;CIGAR=1X;DP=37;DPB=37;DPRA=0;EPP=16.0391;EPPR=46.79;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=2;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=0.967742;PAO=0;PQA=0;PQR=0;PRO=0;QA=234;QR=1082;RO=31;RPL=0;RPP=16.0391;RPPR=46.79;RPR=6;RUN=1;SAF=6;SAP=16.0391;SAR=0;SRF=31;SRP=70.3259;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:15:14,1:14:485:1:40:0,-0.519771,-39.9798 ./.:.:.:.:.:.:.:. 0/1:22:17,5:17:597:5:194:-11.2093,0,-47.4312 dDocent_Contig_12508 15 . A T 155.271 . AB=0.666667;ABP=5.18177;AC=1;AF=0.166667;AN=6;AO=6;CIGAR=1X3M2X;DP=53;DPB=53;DPRA=0.409091;EPP=3.0103;EPPR=100.727;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=0;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=219;QR=1780;RO=45;RPL=0;RPP=16.0391;RPPR=100.727;RPR=6;RUN=1;SAF=3;SAP=3.0103;SAR=3;SRF=45;SRP=100.727;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|0:26:25,0:25:986:0:0:0,-7.52575,-88.6439 0|1:9:3,6:3:120:6:219:-17.351,0,-8.47842 0|0:18:17,0:17:674:0:0:0,-5.11751,-60.5837 dDocent_Contig_12509 13 . G A 157.747 . AB=0.173077;ABP=51.2838;AC=1;AF=0.166667;AN=6;AO=14;CIGAR=1X;DP=213;DPB=213;DPRA=0;EPP=33.4109;EPPR=428.619;GTI=0;LEN=1;MEANALT=1.66667;MQM=58.5;MQMR=56.8469;NS=3;NUMALT=1;ODDS=6.93889e-18;PAIRED=0;PAIREDR=0.316327;PAO=0;PQA=0;PQR=0;PRO=0;QA=562;QR=7813;RO=196;RPL=0;RPP=33.4109;RPPR=428.619;RPR=14;RUN=1;SAF=14;SAP=33.4109;SAR=0;SRF=196;SRP=428.619;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:106:102,3:102:4044:3:120:0,-20.8677,-339.543 0/1:52:41,9:41:1632:9:363:-17.5986,0,-131.346 0/0:55:53,2:53:2137:2:79:0,-9.0594,-180.258 dDocent_Contig_12510 10 . A T 1701.81 . AB=0.0526316;ABP=69.0688;AC=0;AF=0;AN=6;AO=2;CIGAR=1M2X;DP=189;DPB=166;DPRA=0;EPP=7.35324;EPPR=257.073;GTI=0;LEN=1;MEANALT=2;MQM=60;MQMR=59.6496;NS=3;NUMALT=2;ODDS=0;PAIRED=1;PAIREDR=0.991453;PAO=0;PQA=0;PQR=0;PRO=0;QA=76;QR=4556;RO=117;RPL=0;RPP=7.35324;RPPR=257.073;RPR=2;RUN=1;SAF=2;SAP=7.35324;SAR=0;SRF=117;SRP=257.073;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|0:108:71,36,0:71:2787:36,0:1328,0:-87.189,0,-217.35,-108.562,-228.187,-336.771 0|0:43:26,17,0:26:989:17,0:631,0:-43.8727,0,-76.3685,-51.6995,-81.486,-132.812 0|0:38:20,16,2:20:780:16,2:617,76:-44.6427,0,-59.3051,-44.4321,-57.8907,-107.945 dDocent_Contig_12511 16 . A G 51.068 . AB=0.148148;ABP=32.0437;AC=1;AF=0.166667;AN=6;AO=4;CIGAR=1X;DP=78;DPB=78;DPRA=1.05882;EPP=11.6962;EPPR=163.699;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=163;QR=2936;RO=74;RPL=0;RPP=11.6962;RPPR=163.699;RPR=4;RUN=1;SAF=4;SAP=11.6962;SAR=0;SRF=74;SRP=163.699;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:47:47,0:47:1878:0:0:0,-14.1484,-169.225 0/0:4:4,0:4:157:0:0:0,-1.20412,-14.5079 0/1:27:23,4:23:901:4:163:-6.93062,0,-73.2647 dDocent_Contig_12512 62 . C A 802.94 . AB=0.461538;ABP=3.84548;AC=3;AF=0.5;AN=6;AO=30;CIGAR=1X;DP=65;DPB=65;DPRA=0;EPP=68.1545;EPPR=76.8404;GTI=0;LEN=1;MEANALT=1.33333;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=1157;QR=1328;RO=34;RPL=30;RPP=68.1545;RPPR=76.8404;RPR=0;RUN=1;SAF=30;SAP=68.1545;SAR=0;SRF=34;SRP=76.8404;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:43:22,20:22:863:20:774:-57.233,0,-65.2354 0/1:13:7,6:7:263:6:229:-17.0607,0,-20.1093 0/1:9:5,4:5:202:4:154:-11.5233,0,-15.8528 dDocent_Contig_12513 22 . T G 102.907 . AB=0.222222;ABP=9.04217;AC=3;AF=0.5;AN=6;AO=4;CIGAR=1M2I1X;DP=20;DPB=24;DPRA=0.611111;EPP=11.6962;EPPR=37.7539;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=153;QR=634;RO=16;RPL=0;RPP=11.6962;RPPR=37.7539;RPR=4;RUN=1;SAF=4;SAP=11.6962;SAR=0;SRF=16;SRP=37.7539;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|1:9:7,2:7:276:2:73:-4.2208,0,-22.4973 0|0:9:9,0:9:358:0:0:0,-2.70927,-32.5834 1|1:2:0,2:0:0:2:80:-7.59157,-0.60206,0 dDocent_Contig_12514 68 . A T 44.6965 . AB=0.5;ABP=3.0103;AC=1;AF=0.166667;AN=6;AO=2;CIGAR=1X;DP=37;DPB=37;DPRA=0.242424;EPP=7.35324;EPPR=79.0118;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=0;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=79;QR=1305;RO=35;RPL=2;RPP=7.35324;RPPR=79.0118;RPR=0;RUN=1;SAF=2;SAP=7.35324;SAR=0;SRF=35;SRP=79.0118;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:22:22,0:22:833:0:0:0,-6.62266,-75.2895 0/1:4:2,2:2:72:2:79:-6.29351,0,-5.63225 0/0:11:11,0:11:400:0:0:0,-3.31133,-36.3423 dDocent_Contig_12515 98 . N G 68.3781 . AB=0;ABP=0;AC=2;AF=1;AN=2;AO=2;CIGAR=2X3I3X2I2X;DP=2;DPB=3.42857;DPRA=0;EPP=7.35324;EPPR=0;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=0;NS=1;NUMALT=1;ODDS=5.99146;PAIRED=1;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=72;QR=0;RO=0;RPL=2;RPP=7.35324;RPPR=0;RPR=0;RUN=1;SAF=0;SAP=7.35324;SAR=2;SRF=0;SRP=0;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL .:.:.:.:.:.:.:. 1|1:2:0,2:0:0:2:72:-6.83672,-0.60206,0 .:.:.:.:.:.:.:. dDocent_Contig_12516 20 . C T 326.248 . AB=0.304348;ABP=18.305;AC=3;AF=0.5;AN=6;AO=14;CIGAR=1X;DP=46;DPB=46;DPRA=0;EPP=33.4109;EPPR=72.4974;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=565;QR=1290;RO=32;RPL=0;RPP=33.4109;RPPR=72.4974;RPR=14;RUN=1;SAF=14;SAP=33.4109;SAR=0;SRF=32;SRP=72.4974;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:19:15,4:15:604:4:157:-8.78761,0,-48.9793 0/1:12:6,6:6:237:6:245:-18.8171,0,-18.089 0/1:15:11,4:11:449:4:163:-10.543,0,-36.2504 dDocent_Contig_12517 98 . N A 96.1051 . AB=0;ABP=0;AC=2;AF=1;AN=2;AO=3;CIGAR=2X;DP=3;DPB=3;DPRA=0;EPP=9.52472;EPPR=0;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=0;NS=1;NUMALT=1;ODDS=6.68461;PAIRED=1;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=103;QR=0;RO=0;RPL=3;RPP=9.52472;RPPR=0;RPR=0;RUN=1;SAF=3;SAP=9.52472;SAR=0;SRF=0;SRP=0;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL .:.:.:.:.:.:.:. .:.:.:.:.:.:.:. 1|1:3:0,3:0:0:3:103:-9.60997,-0.90309,0 dDocent_Contig_12518 17 . T C 669.883 . AB=0.214286;ABP=112.204;AC=3;AF=0.5;AN=6;AO=33;CIGAR=1X;DP=154;DPB=154;DPRA=0;EPP=74.6689;EPPR=265.758;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=6.93889e-18;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=1309;QR=4608;RO=121;RPL=0;RPP=74.6689;RPPR=265.758;RPR=33;RUN=1;SAF=33;SAP=74.6689;SAR=0;SRF=121;SRP=265.758;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:102:89,13:89:3377:13:513:-15.806,0,-273.349 0/1:18:5,13:5:182:13:516:-41.3686,0,-11.313 0/1:34:27,7:27:1049:7:280:-15.3365,0,-84.479 dDocent_Contig_12519 21 . C G 360.741 . AB=0.278689;ABP=28.9612;AC=3;AF=0.5;AN=6;AO=17;CIGAR=1X;DP=61;DPB=61;DPRA=0;EPP=39.9253;EPPR=98.5551;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=3.46945e-18;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=654;QR=1770;RO=44;RPL=0;RPP=39.9253;RPPR=98.5551;RPR=17;RUN=1;SAF=17;SAP=39.9253;SAR=0;SRF=44;SRP=98.5551;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:40:35,5:35:1404:5:188:-5.23471,0,-114.57 0/1:7:4,3:4:162:3:122:-9.26528,0,-12.8595 0/1:14:5,9:5:204:9:344:-27.0969,0,-14.5296 dDocent_Contig_12521 7 . A T 96.1297 . AB=0.0981818;ABP=388.672;AC=1;AF=0.166667;AN=6;AO=38;CIGAR=1X;DP=481;DPB=481;DPRA=0;EPP=85.5263;EPPR=964.973;GTI=0;LEN=1;MEANALT=1;MQM=51.9474;MQMR=52.7494;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=0.916479;PAO=0;PQA=0;PQR=0;PRO=0;QA=1467;QR=16931;RO=443;RPL=0;RPP=85.5263;RPPR=964.973;RPR=38;RUN=1;SAF=38;SAP=85.5263;SAR=0;SRF=443;SRP=964.973;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:275:248,27:248:9480:27:1050:-11.1359,0,-728.492 0/0:106:100,6:100:3849:6:231:0,-11.0505,-308.091 0/0:100:95,5:95:3602:5:186:0,-13.2435,-298.216 dDocent_Contig_12523 21 . A C 3001.29 . AB=0.142857;ABP=88.3181;AC=0;AF=0;AN=6;AO=11;CIGAR=3M1X1M;DP=181;DPB=159.2;DPRA=0;EPP=26.8965;EPPR=135.47;GTI=0;LEN=1;MEANALT=2;MQM=60;MQMR=60;NS=3;NUMALT=2;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=428;QR=2368;RO=61;RPL=0;RPP=26.8965;RPPR=135.47;RPR=11;RUN=1;SAF=11;SAP=26.8965;SAR=0;SRF=61;SRP=135.47;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|0:104:30,74,0:30:1152:74,0:2695,0:-211.428,0,-72.6684,-220.459,-94.9447,-315.026 0|0:17:12,4,1:12:471:4,1:156,41:-9.19444,0,-37.5162,-9.41876,-35.3349,-47.8559 0|0:60:19,31,10:19:745:31,10:1113,387:-85.0293,0,-51.9383,-58.9553,-29.4851,-117.224 dDocent_Contig_12525 98 . N G 63.1794 . AB=0;ABP=0;AC=4;AF=1;AN=4;AO=3;CIGAR=1X;DP=3;DPB=3;DPRA=0;EPP=9.52472;EPPR=0;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=0;NS=2;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=62;QR=0;RO=0;RPL=3;RPP=9.52472;RPPR=0;RPR=0;RUN=1;SAF=3;SAP=9.52472;SAR=0;SRF=0;SRP=0;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 1/1:1:0,1:0:0:1:25:-2.49986,-0.30103,0 1/1:2:0,2:0:0:2:37:-3.51467,-0.60206,0 ./.:.:.:.:.:.:.:. dDocent_Contig_12526 8 . T C 1629.84 . AB=0.460317;ABP=4.73369;AC=3;AF=0.5;AN=6;AO=58;CIGAR=1X1M;DP=126;DPB=126;DPRA=0;EPP=128.956;EPPR=118.098;GTI=0;LEN=1;MEANALT=2;MQM=59.2414;MQMR=60;NS=3;NUMALT=2;ODDS=1.38778e-17;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=2242;QR=1997;RO=53;RPL=0;RPP=128.956;RPPR=118.098;RPR=58;RUN=1;SAF=58;SAP=128.956;SAR=0;SRF=53;SRP=118.098;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|1:79:23,10,44:23:862:10,44:388,1698:-132.446,-107.49,-175.075,0,-38.707,-57.3452 0|1:20:14,0,6:14:531:0,6:0,234:-15.4105,-19.6249,-63.1574,0,-43.9189,-42.1128 0|1:27:16,3,8:16:604:3,8:117,310:-20.6499,-15.848,-64.4405,0,-39.8721,-47.0834 dDocent_Contig_12527 28 . T A 162.082 . AB=0.257143;ABP=20.9405;AC=3;AF=0.5;AN=6;AO=9;CIGAR=8M1X2M1X2M1X;DP=35;DPB=34.8667;DPRA=0;EPP=9.04217;EPPR=30.2953;GTI=0;LEN=1;MEANALT=1.66667;MQM=60;MQMR=60;NS=3;NUMALT=2;ODDS=0;PAIRED=0.666667;PAIREDR=0.826087;PAO=0;PQA=0;PQR=0;PRO=0;QA=344;QR=899;RO=23;RPL=0;RPP=22.5536;RPPR=52.9542;RPR=9;RUN=1;SAF=7;SAP=9.04217;SAR=2;SRF=20;SRP=30.2953;SRR=3;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|1:6:4,0,2:4:157:0,2:0,79:-5.69145,-6.89557,-19.8062,0,-13.3044,-12.7023 0|1:11:7,2,2:7:277:2,2:61,75:-4.08433,-1.85143,-24.0632,0,-18.527,-22.2875 0|1:18:12,0,5:12:465:0,5:0,190:-11.952,-15.5644,-53.7657,0,-38.1871,-36.682 dDocent_Contig_12528 97 . A T 77.878 . AB=0.277778;ABP=10.7311;AC=2;AF=0.333333;AN=6;AO=5;CIGAR=1X;DP=22;DPB=22;DPRA=2.25;EPP=13.8677;EPPR=39.9253;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=178;QR=575;RO=17;RPL=5;RPP=13.8677;RPPR=39.9253;RPR=0;RUN=1;SAF=5;SAP=13.8677;SAR=0;SRF=17;SRP=39.9253;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:10:8,2:8:277:2:73:-3.921,0,-22.2564 0/1:8:5,3:5:161:3:105:-7.38785,0,-12.4 0/0:4:4,0:4:137:0:0:0,-1.20412,-12.6682 dDocent_Contig_12529 171 . T C 69.3197 . AB=0.3;ABP=6.48466;AC=1;AF=0.166667;AN=6;AO=3;CIGAR=1X;DP=21;DPB=21;DPRA=1.81818;EPP=9.52472;EPPR=42.0968;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=123;QR=686;RO=18;RPL=3;RPP=9.52472;RPPR=42.0968;RPR=0;RUN=1;SAF=0;SAP=9.52472;SAR=3;SRF=0;SRP=42.0968;SRR=18;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:10:7,3:7:286:3:123:-8.45449,0,-23.1045 0/0:2:2,0:2:81:0:0:0,-0.60206,-7.68573 0/0:9:9,0:9:319:0:0:0,-2.70927,-29.0372 dDocent_Contig_12530 25 . C A 267.357 . AB=0.0444444;ABP=246.36;AC=0;AF=0;AN=6;AO=6;CIGAR=4M1I1X5M;DP=158;DPB=156.2;DPRA=0;EPP=16.0391;EPPR=276.616;GTI=0;LEN=1;MEANALT=2;MQM=60;MQMR=60;NS=3;NUMALT=3;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=215;QR=4904;RO=126;RPL=0;RPP=16.0391;RPPR=276.616;RPR=6;RUN=1;SAF=6;SAP=16.0391;SAR=0;SRF=126;SRP=276.616;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|0:99:87,2,0,10:87:3392:2,0,10:72,0,373:-4.34109,-24.6594,-302.876,-30.5307,-303.478,-309.351,0,-272.959,-278.832,-275.822 0|0:36:26,4,0,6:26:1001:4,0,6:143,0,223:-10.4293,-6.60311,-87.5924,-18.2561,-88.7965,-100.452,0,-70.5514,-82.2063,-80.4001 0|0:23:13,0,3,7:13:511:0,3,7:0,95,261:-17.4875,-21.4009,-63.4537,-13.7767,-55.8217,-54.9186,0,-42.0938,-34.4671,-39.9866 dDocent_Contig_12531 20 . A G 153.783 . AB=0.139535;ABP=100.07;AC=2;AF=0.333333;AN=6;AO=12;CIGAR=1X1M;DP=95;DPB=95;DPRA=4.77778;EPP=29.068;EPPR=178.9;GTI=0;LEN=1;MEANALT=1.5;MQM=60;MQMR=60;NS=3;NUMALT=2;ODDS=0;PAIRED=0.5;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=487;QR=3167;RO=81;RPL=0;RPP=29.068;RPPR=178.9;RPR=12;RUN=1;SAF=12;SAP=29.068;SAR=0;SRF=81;SRP=178.9;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|1:73:65,0,8:65:2549:0,8:0,326:-7.73468,-27.3016,-236.891,0,-209.995,-207.587 0|0:9:9,0,0:9:341:0,0:0,0:0,-2.70927,-31.0362,-2.70927,-31.0362,-31.0362 0|1:13:7,2,4:7:277:2,4:79,161:-11.1665,-6.77559,-28.9653,0,-16.2961,-21.5924 dDocent_Contig_12532 19 . C G 61.8099 . AB=0.166667;ABP=31.9633;AC=1;AF=0.166667;AN=6;AO=6;CIGAR=2X1M;DP=56;DPB=56;DPRA=8.83333;EPP=16.0391;EPPR=94.2121;GTI=0;LEN=1;MEANALT=2.5;MQM=48.5;MQMR=60;NS=3;NUMALT=2;ODDS=0;PAIRED=0;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=204;QR=1640;RO=42;RPL=0;RPP=16.0391;RPPR=94.2121;RPR=6;RUN=1;SAF=6;SAP=16.0391;SAR=0;SRF=42;SRP=94.2121;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|0:23:20,2,1:20:780:2,1:69,34:0,-0.54568,-64.102,-3.2709,-61.9572,-67.1272 0|0:3:3,0,0:3:121:0,0:0,0:0,-0.90309,-11.2802,-0.90309,-11.2802,-11.2802 0|1:30:19,5,5:19:739:5,5:167,170:-7.96445,-0.541403,-59.7901,0,-47.6207,-59.2562 dDocent_Contig_12534 26 . T A 758.313 . AB=0.154472;ABP=130.562;AC=1;AF=0.166667;AN=6;AO=19;CIGAR=2M1X6M;DP=123;DPB=121.222;DPRA=0;EPP=44.2683;EPPR=126.784;GTI=0;LEN=1;MEANALT=3.66667;MQM=60;MQMR=60;NS=3;NUMALT=3;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=727;QR=2185;RO=57;RPL=0;RPP=44.2683;RPPR=126.784;RPR=19;RUN=1;SAF=19;SAP=44.2683;SAR=0;SRF=57;SRP=126.784;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|0:57:30,5,9,12:30:1162:5,9,12:195,340,480:-30.5184,-23.5197,-117.473,-11.6866,-91.1122,-104.432,0,-79.4344,-67.5979,-91.8519 0|0:44:23,6,5,10:23:879:6,5,10:213,197,395:-25.5909,-15.1778,-85.48,-16.3037,-71.0775,-86.9158,0,-54.7793,-55.9121,-69.112 1|0:22:4,5,5,7:4:144:5,5,7:186,190,274:-25.1863,-11.1658,-21.4073,-10.8028,-7.32304,-21.045,-3.84578,-0.363968,0,-13.4887 dDocent_Contig_12535 8 . T C 1105.19 . AB=0.411765;ABP=9.90792;AC=3;AF=0.5;AN=6;AO=42;CIGAR=1X;DP=102;DPB=102;DPRA=0;EPP=94.2121;EPPR=133.299;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=1619;QR=2306;RO=60;RPL=0;RPP=94.2121;RPPR=133.299;RPR=42;RUN=1;SAF=42;SAP=94.2121;SAR=0;SRF=60;SRP=133.299;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:73:42,31:42:1612:31:1196:-85.9611,0,-123.365 0/1:3:1,2:1:39:2:74:-6.12234,0,-2.99347 0/1:26:17,9:17:655:9:349:-23.9441,0,-51.4593 dDocent_Contig_12536 16 . T G 322.278 . AB=0.174603;ABP=60.9507;AC=2;AF=0.333334;AN=6;AO=11;CIGAR=1X11M;DP=75;DPB=75;DPRA=2.625;EPP=26.8965;EPPR=92.0407;GTI=0;LEN=1;MEANALT=4.5;MQM=60;MQMR=60;NS=3;NUMALT=4;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=440;QR=1563;RO=41;RPL=0;RPP=26.8965;RPPR=92.0407;RPR=11;RUN=1;SAF=11;SAP=26.8965;SAR=0;SRF=41;SRP=92.0407;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|1:33:9,3,2,8,8:9:357:3,2,8,8:120,77,303,319:-23.5657,-16.3887,-44.8755,-19.9531,-39.4567,-48.7404,-1.43977,-20.942,-24.5061,-28.4192,0,-19.505,-23.0693,-4.55547,-26.983 0|0:12:11,1,0,0,0:11:383:1,0,0,0:25,0,0,0:0,-1.1125,-32.2952,-3.31133,-32.5962,-34.5369,-3.31133,-32.5962,-34.5369,-34.5369,-3.31133,-32.5962,-34.5369,-34.5369,-34.5369 0|1:30:21,0,6,0,3:21:823:0,6,0,3:0,226,0,121:-12.1797,-18.5013,-86.1825,0,-67.6669,-65.8607,-18.5013,-86.1825,-67.6669,-86.1825,-8.51842,-76.207,-57.6914,-76.207,-75.3039 dDocent_Contig_12537 55 . G C 1032.47 . AB=0.537313;ABP=3.82055;AC=3;AF=0.5;AN=6;AO=36;CIGAR=1X2M1X;DP=67;DPB=67;DPRA=0;EPP=81.1833;EPPR=70.3259;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=0.944444;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=1421;QR=1158;RO=31;RPL=36;RPP=81.1833;RPPR=70.3259;RPR=0;RUN=1;SAF=36;SAP=81.1833;SAR=0;SRF=31;SRP=70.3259;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|1:28:18,10:18:680:10:392:-27.2072,0,-53.1032 0|1:18:6,12:6:226:12:470:-37.2308,0,-15.2836 0|1:21:7,14:7:252:14:559:-44.3319,0,-16.7037 dDocent_Contig_12538 23 . T A 1730.29 . AB=0.425532;ABP=9.80193;AC=4;AF=0.666667;AN=6;AO=61;CIGAR=1X;DP=142;DPB=142;DPRA=0;EPP=135.47;EPPR=178.9;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=2423;QR=3208;RO=81;RPL=0;RPP=135.47;RPPR=178.9;RPR=61;RUN=1;SAF=61;SAP=135.47;SAR=0;SRF=81;SRP=178.9;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:116:70,46:70:2760:46:1829:-129.898,0,-213.58 1/1:1:0,1:0:0:1:38:-3.79727,-0.30103,0 0/1:25:11,14:11:448:14:556:-42.8561,0,-33.1497 dDocent_Contig_12539 146 . T C 42.7012 . AB=0.176471;ABP=18.4661;AC=1;AF=0.166667;AN=6;AO=3;CIGAR=1X;DP=28;DPB=28;DPRA=3.09091;EPP=9.52472;EPPR=57.2971;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=117;QR=947;RO=25;RPL=0;RPP=9.52472;RPPR=57.2971;RPR=3;RUN=1;SAF=0;SAP=9.52472;SAR=3;SRF=0;SRP=57.2971;SRR=25;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:17:14,3:14:533:3:117:-5.79287,0,-43.1945 0/0:4:4,0:4:148:0:0:0,-1.20412,-13.68 0/0:7:7,0:7:266:0:0:0,-2.10721,-24.3013 dDocent_Contig_12540 74 . C A 37.7108 . AB=0.111111;ABP=144.88;AC=2;AF=0.333333;AN=6;AO=12;CIGAR=1X;DP=129;DPB=129;DPRA=2.57143;EPP=29.068;EPPR=254.901;GTI=0;LEN=1;MEANALT=1.5;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=0.956897;PAO=0;PQA=0;PQR=0;PRO=0;QA=435;QR=4230;RO=116;RPL=12;RPP=29.068;RPPR=254.901;RPR=0;RUN=1;SAF=12;SAP=29.068;SAR=0;SRF=116;SRP=254.901;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:68:60,7:60:2190:7:258:-3.0445,0,-176.798 0/0:21:21,0:21:787:0:0:0,-6.32163,-71.1524 0/1:40:35,5:35:1253:5:177:-4.23569,0,-101.028 dDocent_Contig_12541 8 . T C 329.097 . AB=0.103774;ABP=436.649;AC=1;AF=0.166667;AN=6;AO=46;CIGAR=2M1X2M;DP=534;DPB=546.6;DPRA=0;EPP=102.898;EPPR=738.838;GTI=0;LEN=1;MEANALT=8.33333;MQM=58.4783;MQMR=52.3218;NS=3;NUMALT=3;ODDS=0;PAIRED=0.521739;PAIREDR=0.55198;PAO=0;PQA=0;PQR=0;PRO=0;QA=1769;QR=15383;RO=404;RPL=0;RPP=102.898;RPPR=880.285;RPR=46;RUN=1;SAF=46;SAP=102.898;SAR=0;SRF=387;SRP=738.838;SRR=17;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|1:318:232,18,33,7:232:8863:18,33,7:681,1271,269:-34.4326,-48.6289,-735.732,0,-636.887,-682.594,-82.1875,-719.068,-670.445,-772.601 0|0:84:66,0,5,4:66:2478:0,5,4:0,192,153:0,-19.868,-215.577,-4.11721,-199.827,-198.322,-7.31299,-203.022,-187.272,-201.818 0|0:132:106,1,8,7:106:4042:1,8,7:37,306,257:0,-28.8816,-345.591,-6.78863,-320.781,-321.4,-10.8985,-324.885,-302.801,-325.805 dDocent_Contig_12542 29 . G A 104.842 . AB=0.212121;ABP=26.7649;AC=3;AF=0.5;AN=6;AO=7;CIGAR=1X;DP=33;DPB=33;DPRA=0;EPP=18.2106;EPPR=59.4686;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=275;QR=1047;RO=26;RPL=0;RPP=18.2106;RPPR=59.4686;RPR=7;RUN=1;SAF=7;SAP=18.2106;SAR=0;SRF=26;SRP=59.4686;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:9:7,2:7:282:2:82:-5.07041,0,-23.0428 0/1:17:15,2:15:602:2:82:-2.66217,0,-49.4006 0/1:7:4,3:4:163:3:111:-8.244,0,-12.9512 dDocent_Contig_12543 10 . A T 507.54 . AB=0.434783;ABP=4.70971;AC=3;AF=0.5;AN=6;AO=20;CIGAR=1X2M1X1M1X1M1X;DP=46;DPB=46;DPRA=0;EPP=46.4397;EPPR=52.9542;GTI=0;LEN=1;MEANALT=2;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=770;QR=897;RO=23;RPL=0;RPP=46.4397;RPPR=52.9542;RPR=20;RUN=1;SAF=20;SAP=46.4397;SAR=0;SRF=23;SRP=52.9542;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|1:23:11,11:11:429:11:415:-30.6884,0,-31.953 0|1:8:2,5:2:79:5:197:-15.6006,0,-4.99251 0|1:15:10,4:10:389:4:158:-9.98765,0,-30.7551 dDocent_Contig_12545 14 . A G 139.758 . AB=0.192;ABP=106.008;AC=2;AF=0.333333;AN=6;AO=27;CIGAR=1X;DP=179;DPB=179;DPRA=0;EPP=61.6401;EPPR=333.074;GTI=0;LEN=1;MEANALT=1;MQM=25.7407;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=0;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=1008;QR=5669;RO=152;RPL=0;RPP=61.6401;RPPR=333.074;RPR=27;RUN=1;SAF=27;SAP=61.6401;SAR=0;SRF=152;SRP=333.074;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:111:94,17:94:3495:17:639:-6.8376,0,-281.286 0/1:14:7,7:7:263:7:260:-10.6611,0,-19.8125 0/0:54:51,3:51:1911:3:109:0,-9.00361,-164.991 dDocent_Contig_12546 27 . C A 1376.69 . AB=0.359155;ABP=27.4776;AC=2;AF=0.333333;AN=6;AO=51;CIGAR=1X6M;DP=142;DPB=142;DPRA=0;EPP=113.755;EPPR=168.042;GTI=0;LEN=1;MEANALT=2.33333;MQM=60;MQMR=60;NS=3;NUMALT=3;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=2007;QR=2999;RO=76;RPL=0;RPP=113.755;RPPR=168.042;RPR=51;RUN=1;SAF=51;SAP=113.755;SAR=0;SRF=76;SRP=168.042;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|1:80:44,6,29,0:44:1739:6,29,0:231,1133,0:-80.0334,-82.2342,-223.538,0,-132.204,-134.525,-93.2787,-225.345,-143.255,-236.401 0|0:32:24,0,4,4:24:941:0,4,4:0,153,162:-6.14476,-13.3695,-90.751,-0.825752,-78.1975,-76.9934,0,-77.3909,-64.8374,-76.1868 0|1:30:8,0,18,4:8:319:0,18,4:0,721,159:-56.9923,-59.4005,-85.6711,0,-26.2717,-20.8532,-46.3108,-72.5812,-13.1819,-71.377 dDocent_Contig_12547 9 . G A 1161.61 . AB=0.554054;ABP=4.88833;AC=3;AF=0.5;AN=6;AO=41;CIGAR=1X;DP=74;DPB=74;DPRA=0;EPP=92.0407;EPPR=74.6689;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=1588;QR=1263;RO=33;RPL=0;RPP=92.0407;RPPR=74.6689;RPR=41;RUN=1;SAF=41;SAP=92.0407;SAR=0;SRF=33;SRP=74.6689;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:40:15,25:15:578:25:969:-75.4826,0,-40.3211 0/1:11:3,8:3:117:8:308:-24.7705,0,-7.59905 0/1:23:15,8:15:568:8:311:-21.4306,0,-44.5365 dDocent_Contig_12548 147 . A G 1490.88 . AB=0.0506329;ABP=141.572;AC=0;AF=0;AN=6;AO=4;CIGAR=1X1M1X;DP=85;DPB=85;DPRA=0;EPP=11.6962;EPPR=70.3259;GTI=0;LEN=1;MEANALT=2;MQM=60;MQMR=60;NS=3;NUMALT=2;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=162;QR=1230;RO=31;RPL=0;RPP=11.6962;RPPR=70.3259;RPR=4;RUN=1;SAF=0;SAP=11.6962;SAR=4;SRF=0;SRP=70.3259;SRR=31;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|0:49:13,3,33:13:516:3,33:122,1314:-104.269,-98.1189,-139.692,0,-32.4035,-32.5346 0|0:6:2,0,4:2:81:0,4:0,150:-12.0553,-12.6573,-19.3465,0,-7.08367,-5.87955 0|0:30:16,1,13:16:633:1,13:40,523:-38.2864,-39.808,-91.5981,0,-48.7953,-48.1773 dDocent_Contig_12549 94 . A C 146.606 . AB=0;ABP=0;AC=2;AF=1;AN=2;AO=6;CIGAR=2X1M2I11X1D1M;DP=6;DPB=6.375;DPRA=0;EPP=16.0391;EPPR=0;GTI=0;LEN=1;MEANALT=1;MQM=27;MQMR=0;NS=1;NUMALT=1;ODDS=8.76405;PAIRED=1;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=228;QR=0;RO=0;RPL=0;RPP=16.0391;RPPR=0;RPR=6;RUN=1;SAF=6;SAP=16.0391;SAR=0;SRF=0;SRP=0;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL .:.:.:.:.:.:.:. 1|1:6:0,6:0:0:6:228:-14.6605,-1.80618,0 .:.:.:.:.:.:.:. dDocent_Contig_12551 107 . N A 374.471 . AB=0;ABP=0;AC=4;AF=1;AN=4;AO=14;CIGAR=1X;DP=14;DPB=14;DPRA=0;EPP=33.4109;EPPR=0;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=0;NS=2;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=406;QR=0;RO=0;RPL=0;RPP=33.4109;RPPR=0;RPR=14;RUN=1;SAF=0;SAP=33.4109;SAR=14;SRF=0;SRP=0;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 1/1:12:0,12:0:0:12:340:-30.8772,-3.61236,0 ./.:.:.:.:.:.:.:. 1/1:2:0,2:0:0:2:66:-6.26831,-0.60206,0 dDocent_Contig_12552 28 . A G 155.928 . AB=0.285714;ABP=8.59409;AC=1;AF=0.166667;AN=6;AO=4;CIGAR=6M1X5M;DP=77;DPB=78.5833;DPRA=0.25;EPP=11.6962;EPPR=141.985;GTI=0;LEN=1;MEANALT=2;MQM=60;MQMR=60;NS=3;NUMALT=4;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=161;QR=2512;RO=64;RPL=0;RPP=11.6962;RPPR=141.985;RPR=4;RUN=1;SAF=4;SAP=11.6962;SAR=0;SRF=64;SRP=141.985;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|0:56:52,0,4,0,0:52:2040:0,4,0,0:0,153,0,0:0,-15.6536,-183.422,-2.71973,-170.871,-169.667,-15.6536,-183.422,-170.871,-183.422,-15.6536,-183.422,-170.871,-183.422,-183.422 0|0:7:4,0,0,3,0:4:158:0,0,3,0:0,0,111,0:-8.24636,-9.45048,-22.4664,-9.45048,-22.4664,-22.4664,0,-13.3964,-13.3964,-12.4933,-9.45048,-22.4664,-22.4664,-13.3964,-22.4664 0|1:14:8,2,0,0,4:8:314:2,0,0,4:78,0,0,161:-10.8693,-6.87012,-32.0855,-13.2776,-32.6876,-39.0984,-13.2776,-32.6876,-39.0984,-39.0984,0,-19.415,-25.8261,-25.8261,-24.622 dDocent_Contig_12553 39 . T A 1568.69 . AB=0.529412;ABP=3.7767;AC=3;AF=0.5;AN=6;AO=54;CIGAR=1X;DP=102;DPB=102;DPRA=0;EPP=120.27;EPPR=107.241;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=6.93889e-18;PAIRED=0.388889;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=2135;QR=1885;RO=48;RPL=0;RPP=120.27;RPPR=107.241;RPR=54;RUN=1;SAF=54;SAP=120.27;SAR=0;SRF=48;SRP=107.241;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:67:26,41:26:1020:41:1629:-126.67,0,-71.921 0/1:22:17,5:17:665:5:182:-10.1066,0,-53.5542 0/1:13:5,8:5:200:8:324:-25.6158,0,-14.4662 dDocent_Contig_12555 13 . T G 66.9798 . AB=0.112676;ABP=95.5273;AC=1;AF=0.166667;AN=6;AO=13;CIGAR=1X3M1X1M1X;DP=302;DPB=302;DPRA=0;EPP=31.2394;EPPR=565.422;GTI=0;LEN=1;MEANALT=4.66667;MQM=57.9231;MQMR=55.3861;NS=3;NUMALT=2;ODDS=0;PAIRED=0;PAIREDR=0.0733591;PAO=0;PQA=0;PQR=0;PRO=0;QA=512;QR=10084;RO=259;RPL=0;RPP=31.2394;RPPR=565.422;RPR=13;RUN=1;SAF=13;SAP=31.2394;SAR=0;SRF=259;SRP=565.422;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|0:156:136,3,6:136:5293:3,6:118,243:0,-31.2299,-453.807,-20.8897,-434.672,-442.573 0|1:71:59,8,3:59:2288:8,3:319,120:-8.52189,0,-184.613,-16.3907,-177.136,-202.48 0|0:75:64,2,5:64:2503:2,5:75,194:0,-13.153,-207.327,-3.31125,-191.989,-196.596 dDocent_Contig_12556 35 . A G 41.3702 . AB=0.133333;ABP=38.0434;AC=2;AF=0.333333;AN=6;AO=4;CIGAR=1X;DP=41;DPB=41;DPRA=1.36364;EPP=11.6962;EPPR=83.3548;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=162;QR=1473;RO=37;RPL=0;RPP=11.6962;RPPR=83.3548;RPR=4;RUN=1;SAF=4;SAP=11.6962;SAR=0;SRF=37;SRP=83.3548;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:19:16,3:16:634:3:122:-5.65292,0,-51.6755 0/0:11:11,0:11:438:0:0:0,-3.31133,-39.7756 0/1:11:10,1:10:401:1:40:-0.684349,0,-33.1383 dDocent_Contig_12558 8 . T C 480.319 . AB=0.363636;ABP=11.8936;AC=3;AF=0.5;AN=6;AO=20;CIGAR=1X;DP=55;DPB=55;DPRA=0;EPP=46.4397;EPPR=79.0118;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=767;QR=1345;RO=35;RPL=0;RPP=46.4397;RPPR=79.0118;RPR=20;RUN=1;SAF=20;SAP=46.4397;SAR=0;SRF=35;SRP=79.0118;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:28:15,13:15:579:13:503:-37.1898,0,-44.024 0/1:14:10,4:10:382:4:155:-10.111,0,-30.5198 0/1:13:10,3:10:384:3:109:-6.2539,0,-31.0024 dDocent_Contig_12559 49 . G A 91.4846 . AB=0.193548;ABP=28.2974;AC=2;AF=0.333333;AN=6;AO=6;CIGAR=1X;DP=63;DPB=63;DPRA=0.484375;EPP=16.0391;EPPR=118.251;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=236;QR=2276;RO=57;RPL=0;RPP=16.0391;RPPR=118.251;RPR=6;RUN=1;SAF=6;SAP=16.0391;SAR=0;SRF=57;SRP=126.784;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:32:32,0:32:1281:0:0:0,-9.63296,-115.556 0/1:7:5,2:5:192:2:78:-5.29609,0,-15.5411 0/1:24:20,4:20:803:4:158:-7.37518,0,-65.3612 dDocent_Contig_12560 124 . C A 92.2288 . AB=0.666667;ABP=4.45795;AC=1;AF=0.166667;AN=6;AO=4;CIGAR=1X;DP=26;DPB=26;DPRA=0.6;EPP=11.6962;EPPR=50.7827;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=139;QR=756;RO=22;RPL=0;RPP=11.6962;RPPR=50.7827;RPR=4;RUN=1;SAF=0;SAP=11.6962;SAR=4;SRF=0;SRP=50.7827;SRR=22;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:14:14,0:14:480:0:0:0,-4.21442,-43.5275 0/0:6:6,0:6:207:0:0:0,-1.80618,-18.9681 0/1:6:2,4:2:69:4:139:-11.0465,0,-4.74648 dDocent_Contig_12562 108 . G A 142.25 . AB=0.6;ABP=3.87889;AC=1;AF=0.166667;AN=6;AO=6;CIGAR=1X;DP=43;DPB=43;DPRA=0.606061;EPP=16.0391;EPPR=83.3548;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=8.67362e-19;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=208;QR=1240;RO=37;RPL=0;RPP=16.0391;RPPR=83.3548;RPR=6;RUN=1;SAF=0;SAP=16.0391;SAR=6;SRF=0;SRP=83.3548;SRR=37;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:25:25,0:25:837:0:0:0,-7.52575,-75.6401 0/0:8:8,0:8:270:0:0:0,-2.40824,-24.6295 0/1:10:4,6:4:133:6:208:-16.0489,0,-9.28834 dDocent_Contig_12564 17 . A C 224.165 . AB=0.225806;ABP=23.254;AC=4;AF=0.666667;AN=6;AO=9;CIGAR=1X;DP=33;DPB=33;DPRA=0;EPP=22.5536;EPPR=55.1256;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=362;QR=935;RO=24;RPL=0;RPP=22.5536;RPPR=55.1256;RPR=9;RUN=1;SAF=9;SAP=22.5536;SAR=0;SRF=24;SRP=55.1256;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:19:13,6:13:507:6:242:-16.4374,0,-40.2453 0/1:12:11,1:11:428:1:41:-0.482207,0,-35.2578 1/1:2:0,2:0:0:2:79:-7.49724,-0.60206,0 dDocent_Contig_12566 29 . G A 92.0265 . AB=0.112245;ABP=130.994;AC=1;AF=0.166667;AN=6;AO=11;CIGAR=1X;DP=109;DPB=109;DPRA=17.8182;EPP=26.8965;EPPR=215.815;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=0.94898;PAO=0;PQA=0;PQR=0;PRO=0;QA=443;QR=3857;RO=98;RPL=0;RPP=26.8965;RPPR=215.815;RPR=11;RUN=1;SAF=11;SAP=26.8965;SAR=0;SRF=98;SRP=215.815;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:98:87,11:87:3426:11:443:-10.7253,0,-278.897 0/0:3:3,0:3:119:0:0:0,-0.90309,-11.0945 0/0:8:8,0:8:312:0:0:0,-2.40824,-28.44 dDocent_Contig_12568 10 . A C 1173.57 . AB=0.455556;ABP=4.55446;AC=3;AF=0.5;AN=6;AO=41;CIGAR=1X;DP=90;DPB=90;DPRA=0;EPP=92.0407;EPPR=109.412;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=1655;QR=1926;RO=49;RPL=0;RPP=92.0407;RPPR=109.412;RPR=41;RUN=1;SAF=41;SAP=92.0407;SAR=0;SRF=49;SRP=109.412;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:51:29,22:29:1149:22:891:-65.1417,0,-88.3447 0/1:9:4,5:4:154:5:198:-15.4865,0,-11.524 0/1:30:16,14:16:623:14:566:-42.2517,0,-47.3722 dDocent_Contig_12569 37 . A C 107.348 . AB=0.5;ABP=3.0103;AC=1;AF=0.166667;AN=6;AO=4;CIGAR=1X;DP=94;DPB=94;DPRA=0.186047;EPP=11.6962;EPPR=95.7563;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=0.688889;PAO=0;PQA=0;PQR=0;PRO=0;QA=162;QR=3578;RO=90;RPL=0;RPP=11.6962;RPPR=198.443;RPR=4;RUN=1;SAF=4;SAP=11.6962;SAR=0;SRF=76;SRP=95.7563;SRR=14;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:51:51,0:51:2042:0:0:0,-15.3525,-183.967 0/1:8:4,4:4:156:4:162:-12.5587,0,-12.0073 0/0:35:35,0:35:1380:0:0:0,-10.536,-124.459 dDocent_Contig_12570 28 . A G 74.2396 . AB=0.142857;ABP=57.2971;AC=2;AF=0.333333;AN=6;AO=7;CIGAR=1X3M1X;DP=55;DPB=55;DPRA=4.08333;EPP=18.2106;EPPR=107.241;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=277;QR=1891;RO=48;RPL=0;RPP=18.2106;RPPR=107.241;RPR=7;RUN=1;SAF=7;SAP=18.2106;SAR=0;SRF=48;SRP=107.241;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|1:31:27,4:27:1066:4:156:-5.08502,0,-86.9055 0|0:6:6,0:6:232:0:0:0,-1.80618,-21.2477 0|1:18:15,3:15:593:3:121:-5.86166,0,-48.2895 dDocent_Contig_12571 187 . C T 221.42 . AB=0.218182;ABP=40.9518;AC=3;AF=0.5;AN=6;AO=12;CIGAR=1X;DP=55;DPB=55;DPRA=0;EPP=29.068;EPPR=96.3836;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=478;QR=1699;RO=43;RPL=12;RPP=29.068;RPPR=96.3836;RPR=0;RUN=1;SAF=0;SAP=29.068;SAR=12;SRF=0;SRP=96.3836;SRR=43;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:41:32,9:32:1253:9:355:-19.9692,0,-100.704 0/1:5:4,1:4:160:1:41:-2.58942,0,-13.2783 0/1:9:7,2:7:286:2:82:-5.07041,0,-23.4055 dDocent_Contig_12572 119 . T C 36.6521 . AB=0.214286;ABP=12.937;AC=1;AF=0.166667;AN=6;AO=6;CIGAR=1X;DP=53;DPB=53;DPRA=6.125;EPP=16.0391;EPPR=105.07;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=209;QR=1616;RO=47;RPL=0;RPP=16.0391;RPPR=105.07;RPR=6;RUN=1;SAF=0;SAP=16.0391;SAR=6;SRF=0;SRP=105.07;SRR=47;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:35:32,3:32:1100:3:105:0,-0.739888,-89.5117 0/0:4:4,0:4:140:0:0:0,-1.20412,-12.9449 0/1:14:11,3:11:376:3:104:-5.48867,0,-29.9554 dDocent_Contig_12573 25 . T C 2746.31 . AB=0.801802;ABP=90.8278;AC=3;AF=0.5;AN=6;AO=89;CIGAR=1X;DP=111;DPB=111;DPRA=0;EPP=196.271;EPPR=50.7827;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=3475;QR=869;RO=22;RPL=0;RPP=196.271;RPPR=50.7827;RPR=89;RUN=1;SAF=89;SAP=196.271;SAR=0;SRF=22;SRP=50.7827;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:75:9,66:9:361:66:2593:-210.944,0,-10.2757 0/1:8:4,4:4:161:4:142:-10.7191,0,-12.4667 0/1:28:9,19:9:347:19:740:-58.4909,0,-23.1583 dDocent_Contig_12574 106 . N T 223.913 . AB=0;ABP=0;AC=2;AF=1;AN=2;AO=7;CIGAR=2X;DP=7;DPB=7;DPRA=0;EPP=18.2106;EPPR=0;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=0;NS=1;NUMALT=1;ODDS=9.4572;PAIRED=1;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=245;QR=0;RO=0;RPL=0;RPP=18.2106;RPPR=0;RPR=7;RUN=1;SAF=0;SAP=18.2106;SAR=7;SRF=0;SRP=0;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 1|1:7:0,7:0:0:7:245:-22.3912,-2.10721,0 .:.:.:.:.:.:.:. .:.:.:.:.:.:.:. dDocent_Contig_12575 12 . G A 450.917 . AB=0.0588235;ABP=60.4905;AC=0;AF=0;AN=6;AO=2;CIGAR=2X3M2X;DP=64;DPB=64;DPRA=0;EPP=7.35324;EPPR=68.1545;GTI=0;LEN=1;MEANALT=3;MQM=52;MQMR=60;NS=3;NUMALT=3;ODDS=0;PAIRED=1;PAIREDR=0.766667;PAO=0;PQA=0;PQR=0;PRO=0;QA=78;QR=1184;RO=30;RPL=0;RPP=7.35324;RPPR=68.1545;RPR=2;RUN=1;SAF=2;SAP=7.35324;SAR=0;SRF=30;SRP=68.1545;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|0:34:18,6,2,8:18:715:6,2,8:237,78,320:-20.972,-10.9088,-67.9659,-20.009,-63.394,-78.2879,0,-43.4115,-52.5251,-56.4964 0|0:20:8,7,0,5:8:320:7,0,5:278,0,201:-14.2146,-2.43257,-26.6842,-16.6228,-28.7914,-43.0151,0,-12.2268,-26.4345,-24.9293 0|0:10:4,1,0,5:4:149:1,0,5:39,0,201:-15.4274,-14.0637,-25.9437,-16.6316,-26.2447,-28.8193,0,-9.66454,-12.2356,-10.7304 dDocent_Contig_12577 29 . G C 2504.61 . AB=0.439252;ABP=9.86972;AC=3;AF=0.5;AN=6;AO=94;CIGAR=1X1M;DP=214;DPB=214;DPRA=0;EPP=207.129;EPPR=239.701;GTI=0;LEN=1;MEANALT=2;MQM=43.9255;MQMR=60;NS=3;NUMALT=2;ODDS=0;PAIRED=1;PAIREDR=0.0825688;PAO=0;PQA=0;PQR=0;PRO=0;QA=3709;QR=4078;RO=109;RPL=0;RPP=207.129;RPPR=239.701;RPR=94;RUN=1;SAF=94;SAP=207.129;SAR=0;SRF=109;SRP=239.701;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|1:143:90,7,46:90:3382:7,46:284,1816:-112.765,-123.131,-398.082,0,-260.395,-263.279 0|1:30:6,1,23:6:216:1,23:37,917:-71.8862,-70.6796,-87.9922,0,-14.5975,-10.6888 0|1:41:13,3,25:13:480:3,25:119,976:-71.332,-65.5122,-103.864,0,-29.499,-31.7083 dDocent_Contig_12578 32 . A T 207.042 . AB=0.121622;ABP=95.0338;AC=3;AF=0.5;AN=6;AO=9;CIGAR=1X3M;DP=79;DPB=128;DPRA=0;EPP=22.5536;EPPR=124.613;GTI=0;LEN=1;MEANALT=2.5;MQM=60;MQMR=60;NS=3;NUMALT=2;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=363;QR=2229;RO=56;RPL=0;RPP=22.5536;RPPR=124.613;RPR=9;RUN=1;SAF=9;SAP=22.5536;SAR=0;SRF=56;SRP=124.613;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|1:50:33,8,8:33:1304:8,8:318,322:-16.6057,-0.35965,-105.247,0,-81.1168,-104.891 0|1:5:4,1,0:4:156:1,0:35,0:-1.99348,0,-12.9113,-3.1976,-13.2123,-16.0521 0|1:24:19,4,1:19:769:4,1:160,41:-7.45284,0,-62.1979,-9.78636,-60.0177,-72.8962 dDocent_Contig_12579 87 . G A 35.9293 . AB=0.230769;ABP=11.1951;AC=1;AF=0.166667;AN=6;AO=3;CIGAR=1X;DP=65;DPB=65;DPRA=0.5;EPP=9.52472;EPPR=137.642;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=100;QR=1259;RO=62;RPL=3;RPP=9.52472;RPPR=137.642;RPR=0;RUN=1;SAF=3;SAP=9.52472;SAR=0;SRF=62;SRP=137.642;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:36:36,0:36:725:0:0:0,-10.8371,-65.4439 0/1:13:10,3:10:210:3:100:-5.41673,0,-15.1948 0/0:16:16,0:16:324:0:0:0,-4.81648,-29.3579 dDocent_Contig_12580 43 . G A 962.081 . AB=0.465753;ABP=3.75395;AC=3;AF=0.5;AN=6;AO=34;CIGAR=1X;DP=73;DPB=73;DPRA=0;EPP=76.8404;EPPR=87.6977;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=1363;QR=1554;RO=39;RPL=0;RPP=76.8404;RPPR=87.6977;RPR=34;RUN=1;SAF=34;SAP=76.8404;SAR=0;SRF=39;SRP=87.6977;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:36:11,25:11:438:25:1010:-80.357,0,-28.936 0/1:12:9,3:9:359:3:113:-6.92456,0,-29.061 0/1:25:19,6:19:757:6:240:-14.4494,0,-60.9262 dDocent_Contig_12581 17 . A G 207.204 . AB=0.0540541;ABP=66.922;AC=2;AF=0.333333;AN=6;AO=2;CIGAR=1X2M1X;DP=60;DPB=60;DPRA=3.7;EPP=7.35324;EPPR=105.07;GTI=0;LEN=1;MEANALT=2;MQM=60;MQMR=60;NS=3;NUMALT=2;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=79;QR=1871;RO=47;RPL=0;RPP=7.35324;RPPR=105.07;RPR=2;RUN=1;SAF=2;SAP=7.35324;SAR=0;SRF=47;SRP=105.07;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|1:37:28,7,2:28:1114:7,2:267,79:-13.4647,0,-89.6178,-15.3896,-85.2242,-106.523 0|0:10:10,0,0:10:399:0,0:0,0:0,-3.0103,-36.269,-3.0103,-36.269,-36.269 0|1:13:9,4,0:9:358:4,0:159,0:-10.7786,0,-28.6702,-13.4878,-29.8743,-42.965 dDocent_Contig_12582 58 . T G 507.417 . AB=0.408163;ABP=6.59988;AC=3;AF=0.5;AN=6;AO=20;CIGAR=1X;DP=49;DPB=49;DPRA=0;EPP=46.4397;EPPR=65.983;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=3.46945e-18;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=777;QR=1147;RO=29;RPL=20;RPP=46.4397;RPPR=65.983;RPR=0;RUN=1;SAF=20;SAP=46.4397;SAR=0;SRF=29;SRP=65.983;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:26:17,9:17:681:9:361:-25.0271,0,-53.7916 0/1:14:8,6:8:315:6:231:-16.9397,0,-24.4972 0/1:9:4,5:4:151:5:185:-14.2978,0,-11.2483 dDocent_Contig_12583 14 . A G 629.435 . AB=0.578947;ABP=5.06748;AC=3;AF=0.5;AN=6;AO=22;CIGAR=1X;DP=38;DPB=38;DPRA=0;EPP=50.7827;EPPR=37.7539;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=3.46945e-18;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=873;QR=628;RO=16;RPL=0;RPP=50.7827;RPPR=37.7539;RPR=22;RUN=1;SAF=22;SAP=50.7827;SAR=0;SRF=16;SRP=37.7539;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:28:8,20:8:312:20:792:-63.168,0,-20.014 0/1:3:2,1:2:77:1:41:-3.19148,0,-6.40605 0/1:7:6,1:6:239:1:40:-1.88847,0,-19.778 dDocent_Contig_12584 23 . C T 88.3216 . AB=0.162162;ABP=39.6906;AC=1;AF=0.166667;AN=6;AO=10;CIGAR=1X;DP=108;DPB=108;DPRA=2.34211;EPP=24.725;EPPR=215.815;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=389;QR=3818;RO=98;RPL=0;RPP=24.725;RPPR=215.815;RPR=10;RUN=1;SAF=10;SAP=24.725;SAR=0;SRF=98;SRP=215.815;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:52:48,4:48:1869:4:151:0,-1.69948,-154.475 0/0:19:19,0:19:744:0:0:0,-5.71957,-67.283 0/1:37:31,6:31:1205:6:238:-10.656,0,-97.5877 dDocent_Contig_12585 33 . T C 118.366 . AB=0.3125;ABP=7.89611;AC=1;AF=0.25;AN=4;AO=5;CIGAR=1X;DP=36;DPB=36;DPRA=0.8;EPP=13.8677;EPPR=70.3259;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=2;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=203;QR=1166;RO=31;RPL=0;RPP=13.8677;RPPR=70.3259;RPR=5;RUN=1;SAF=5;SAP=13.8677;SAR=0;SRF=31;SRP=70.3259;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:20:20,0:20:757:0:0:0,-6.0206,-68.4552 ./.:.:.:.:.:.:.:. 0/1:16:11,5:11:409:5:203:-13.8366,0,-32.336 dDocent_Contig_12586 42 . A T 190.624 . AB=0.191489;ABP=41.8658;AC=1;AF=0.25;AN=4;AO=9;CIGAR=1M1X1M;DP=47;DPB=45.3333;DPRA=0;EPP=22.5536;EPPR=74.6689;GTI=0;LEN=1;MEANALT=2.5;MQM=60;MQMR=60;NS=2;NUMALT=2;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=353;QR=1322;RO=33;RPL=0;RPP=22.5536;RPPR=74.6689;RPR=9;RUN=1;SAF=9;SAP=22.5536;SAR=0;SRF=33;SRP=74.6689;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|1:38:27,2,8:27:1081:2,8:82,315:-17.7793,-19.1358,-107.594,0,-82.2859,-86.6465 .:.:.:.:.:.:.:. 0|0:9:6,2,1:6:241:2,1:82,38:-4.9818,0,-19.2758,-3.68138,-16.7645,-23.2337 dDocent_Contig_12589 94 . C A 308.794 . AB=0.464286;ABP=3.32051;AC=1;AF=0.166667;AN=6;AO=13;CIGAR=2X;DP=46;DPB=46;DPRA=3.11111;EPP=31.2394;EPPR=74.6689;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=450;QR=1101;RO=33;RPL=13;RPP=31.2394;RPPR=74.6689;RPR=0;RUN=1;SAF=13;SAP=31.2394;SAR=0;SRF=33;SRP=74.6689;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|1:28:15,13:15:501:13:450:-32.4022,0,-36.9792 0|0:8:8,0:8:282:0:0:0,-2.40824,-25.7218 0|0:10:10,0:10:318:0:0:0,-3.0103,-28.929 dDocent_Contig_12590 70 . A T 82.0848 . AB=0.222222;ABP=15.074;AC=1;AF=0.166667;AN=6;AO=4;CIGAR=1X;DP=41;DPB=41;DPRA=1.56522;EPP=11.6962;EPPR=83.3548;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=164;QR=1441;RO=37;RPL=4;RPP=11.6962;RPPR=83.3548;RPR=0;RUN=1;SAF=4;SAP=11.6962;SAR=0;SRF=37;SRP=83.3548;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:18:14,4:14:535:4:164:-9.73136,0,-43.0593 0/0:9:9,0:9:357:0:0:0,-2.70927,-32.4909 0/0:14:14,0:14:549:0:0:0,-4.21442,-49.7495 dDocent_Contig_12591 84 . A T 42.6377 . AB=0.25;ABP=9.52472;AC=1;AF=0.166667;AN=6;AO=3;CIGAR=1X;DP=68;DPB=68;DPRA=0.428571;EPP=9.52472;EPPR=141.985;GTI=0;LEN=1;MEANALT=2;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=0;PAIREDR=0.78125;PAO=0;PQA=0;PQR=0;PRO=0;QA=104;QR=2158;RO=64;RPL=3;RPP=9.52472;RPPR=141.985;RPR=0;RUN=1;SAF=3;SAP=9.52472;SAR=0;SRF=64;SRP=141.985;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:45:45,0:45:1499:0:0:0,-13.5463,-135.197 0/1:12:8,3:8:271:3:104:-6.08765,0,-21.1131 0/0:11:11,0:11:388:0:0:0,-3.31133,-35.2581 dDocent_Contig_12592 21 . A G 276.162 . AB=0.26;ABP=28.0257;AC=2;AF=0.333333;AN=6;AO=14;CIGAR=1X1M1X3M;DP=63;DPB=63;DPRA=0;EPP=33.4109;EPPR=94.2121;GTI=0;LEN=1;MEANALT=2;MQM=50.3571;MQMR=60;NS=3;NUMALT=2;ODDS=0;PAIRED=0;PAIREDR=0.952381;PAO=0;PQA=0;PQR=0;PRO=0;QA=515;QR=1643;RO=42;RPL=0;RPP=33.4109;RPPR=94.2121;RPR=14;RUN=1;SAF=14;SAP=33.4109;SAR=0;SRF=42;SRP=94.2121;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|1:41:26,10,3:26:1021:10,3:401,117:-24.9467,0,-80.9545,-23.1581,-74.3479,-106.218 0|1:9:4,3,2:4:157:3,2:93,80:-6.16704,0,-12.0047,-0.744562,-6.31512,-13.103 0|0:13:12,1,0:12:465:1,0:21,0:0,-1.81382,-40.0973,-3.61236,-40.3984,-41.9733 dDocent_Contig_12593 26 . A C 64.7803 . AB=0.2;ABP=18.6449;AC=2;AF=0.333333;AN=6;AO=4;CIGAR=1X1M1X;DP=52;DPB=52;DPRA=0.3125;EPP=11.6962;EPPR=107.241;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=159;QR=1928;RO=48;RPL=0;RPP=11.6962;RPPR=107.241;RPR=4;RUN=1;SAF=4;SAP=11.6962;SAR=0;SRF=48;SRP=107.241;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|0:32:32,0:32:1286:0:0:0,-9.63296,-116.009 0|1:9:6,3:6:243:3:118:-8.29324,0,-19.5389 0|1:11:10,1:10:399:1:41:-0.783237,0,-32.9586 dDocent_Contig_12596 15 . G A 3955.31 . AB=0.626214;ABP=31.5135;AC=3;AF=0.5;AN=6;AO=129;CIGAR=1X;DP=206;DPB=206;DPRA=0;EPP=283.13;EPPR=168.042;GTI=0;LEN=1;MEANALT=1.33333;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=5139;QR=3031;RO=76;RPL=0;RPP=283.13;RPPR=168.042;RPR=129;RUN=1;SAF=129;SAP=283.13;SAR=0;SRF=76;SRP=168.042;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:137:62,74:62:2472:74:2944:-223.712,0,-181.274 0/1:18:3,15:3:123:15:591:-48.107,0,-6.04625 0/1:51:11,40:11:436:40:1604:-129.235,0,-24.2403 dDocent_Contig_12597 14 . G A 12779 . AB=0.104135;ABP=891.847;AC=1;AF=0.166667;AN=6;AO=68;CIGAR=1X2M1X;DP=653;DPB=653;DPRA=0;EPP=150.67;EPPR=174.956;GTI=0;LEN=1;MEANALT=7.66667;MQM=59.9118;MQMR=60;NS=3;NUMALT=3;ODDS=0;PAIRED=0.838235;PAIREDR=0.804598;PAO=0;PQA=0;PQR=0;PRO=0;QA=2665;QR=3454;RO=87;RPL=0;RPP=150.67;RPPR=191.928;RPR=68;RUN=1;SAF=68;SAP=150.67;SAR=0;SRF=85;SRP=174.956;SRR=2;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|0:303:52,25,17,173:52:2064:25,17,173:988,680,6766:-535.274,-469.633,-632.003,-499.154,-587.755,-663.932,0,-88.6063,-118.13,-117.825 1|0:195:10,26,3,144:10:400:26,3,144:1007,114,5458:-487.185,-407.475,-432.6,-480.869,-431.101,-512.918,-49.7697,0,-73.3989,-39.3763 0|0:155:25,17,10,88:25:990:17,10,88:670,366,3327:-260.968,-213.375,-289.74,-239.137,-265.501,-317.608,0,-26.3666,-52.1321,-54.996 dDocent_Contig_12598 19 . C A 94.9632 . AB=0.106383;ABP=192.76;AC=2;AF=0.333333;AN=6;AO=15;CIGAR=1X;DP=159;DPB=159;DPRA=3.91667;EPP=35.5824;EPPR=315.702;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=608;QR=5792;RO=144;RPL=0;RPP=35.5824;RPPR=315.702;RPR=15;RUN=1;SAF=15;SAP=35.5824;SAR=0;SRF=144;SRP=315.702;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:80:71,9:71:2875:9:366:-9.22276,0,-234.752 0/0:18:18,0:18:715:0:0:0,-5.41854,-64.6789 0/1:61:55,6:55:2202:6:242:-3.79412,0,-179.985 dDocent_Contig_12599 62 . C T 573.502 . AB=0.621622;ABP=7.76406;AC=3;AF=0.5;AN=6;AO=23;CIGAR=1X;DP=37;DPB=37;DPRA=0;EPP=52.9542;EPPR=31.2394;GTI=0;LEN=1;MEANALT=1.33333;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=806;QR=476;RO=13;RPL=23;RPP=52.9542;RPPR=31.2394;RPR=0;RUN=1;SAF=23;SAP=52.9542;SAR=0;SRF=13;SRP=31.2394;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:24:6,17:6:222:17:586:-46.0537,0,-13.3015 0/1:7:2,5:2:77:5:183:-14.719,0,-5.20193 0/1:6:5,1:5:177:1:37:-1.89165,0,-14.4695 dDocent_Contig_12600 70 . T A 796.015 . AB=0.52459;ABP=3.33068;AC=3;AF=0.5;AN=6;AO=32;CIGAR=1X;DP=61;DPB=61;DPRA=0;EPP=72.4974;EPPR=65.983;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=1136;QR=926;RO=29;RPL=32;RPP=72.4974;RPPR=65.983;RPR=0;RUN=1;SAF=32;SAP=72.4974;SAR=0;SRF=29;SRP=65.983;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:38:10,28:10:313:28:996:-78.5094,0,-17.0342 0/1:8:6,2:6:186:2:73:-4.52306,0,-14.6376 0/1:15:13,2:13:427:2:67:-1.84739,0,-34.2311 dDocent_Contig_12601 21 . C A 1396.85 . AB=0.0555556;ABP=95.6598;AC=0;AF=0;AN=6;AO=3;CIGAR=1X2M1X;DP=155;DPB=155;DPRA=0;EPP=9.52472;EPPR=185.513;GTI=0;LEN=1;MEANALT=4;MQM=49.3333;MQMR=57.2159;NS=3;NUMALT=3;ODDS=0;PAIRED=0;PAIREDR=0.125;PAO=0;PQA=0;PQR=0;PRO=0;QA=118;QR=3483;RO=88;RPL=0;RPP=9.52472;RPPR=177.123;RPR=3;RUN=1;SAF=3;SAP=9.52472;SAR=0;SRF=87;SRP=185.513;SRR=1;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|0:60:30,0,22,8:30:1190:0,22,8:0,890,253:-64.3578,-73.3887,-169.921,0,-96.601,-89.9783,-54.6856,-151.202,-77.889,-148.794 0|0:54:30,3,18,1:30:1171:3,18,1:118,698,30:-48.328,-47.9062,-143.169,0,-86.7284,-90.7622,-55.2355,-141.946,-94.0558,-151.097 0|0:41:28,0,13,0:28:1122:0,13,0:0,498,0:-32.5216,-40.9505,-132.347,0,-91.7821,-87.8687,-40.9505,-132.347,-91.7821,-132.347 dDocent_Contig_12602 110 . C T 59.3548 . AB=0.25;ABP=11.6962;AC=1;AF=0.166667;AN=6;AO=4;CIGAR=1X;DP=32;DPB=32;DPRA=2;EPP=11.6962;EPPR=63.8115;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=8.67362e-19;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=136;QR=978;RO=28;RPL=0;RPP=11.6962;RPPR=63.8115;RPR=4;RUN=1;SAF=0;SAP=11.6962;SAR=4;SRF=0;SRP=63.8115;SRR=28;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:11:11,0:11:386:0:0:0,-3.31133,-35.0764 0/0:5:5,0:5:178:0:0:0,-1.50515,-16.3687 0/1:16:12,4:12:414:4:136:-7.75934,0,-32.7734 dDocent_Contig_12603 8 . T C 166.986 . AB=0.1625;ABP=82.1605;AC=3;AF=0.5;AN=6;AO=13;CIGAR=1X;DP=80;DPB=80;DPRA=0;EPP=31.2394;EPPR=148.499;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=502;QR=2590;RO=67;RPL=0;RPP=31.2394;RPPR=148.499;RPR=13;RUN=1;SAF=13;SAP=31.2394;SAR=0;SRF=67;SRP=148.499;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:35:31,4:31:1202:4:153:-3.60556,0,-97.9397 0/1:26:21,5:21:809:5:193:-9.91458,0,-65.3085 0/1:19:15,4:15:579:4:156:-8.69772,0,-46.7333 dDocent_Contig_12604 10 . T A 575.23 . AB=0.107143;ABP=40.5458;AC=3;AF=0.5;AN=6;AO=3;CIGAR=2X;DP=52;DPB=52;DPRA=0;EPP=9.52472;EPPR=55.1256;GTI=0;LEN=1;MEANALT=2;MQM=24.6667;MQMR=60;NS=3;NUMALT=2;ODDS=3.46945e-18;PAIRED=0;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=112;QR=966;RO=24;RPL=0;RPP=9.52472;RPPR=55.1256;RPR=3;RUN=1;SAF=3;SAP=9.52472;SAR=0;SRF=24;SRP=55.1256;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|1:28:14,11,3:14:565:11,3:439,112:-24.0451,0,-43.4041,-22.8769,-41.3445,-68.597 0|1:9:2,7,0:2:81:7,0:266,0:-19.6754,0,-4.97646,-20.2774,-7.08367,-26.9688 0|1:15:8,7,0:8:320:7,0:281,0:-19.3252,0,-24.6506,-21.7334,-26.7578,-48.1061 dDocent_Contig_12605 11 . T G 171.182 . AB=0.5;ABP=3.0103;AC=1;AF=0.25;AN=4;AO=6;CIGAR=1M1I1X;DP=19;DPB=22;DPRA=1.71429;EPP=16.0391;EPPR=31.2394;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=2;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=245;QR=518;RO=13;RPL=0;RPP=16.0391;RPPR=31.2394;RPR=6;RUN=1;SAF=6;SAP=16.0391;SAR=0;SRF=13;SRP=31.2394;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|1:12:6,6:6:239:6:245:-18.8171,0,-18.2721 .:.:.:.:.:.:.:. 0|0:7:7,0:7:279:0:0:0,-2.10721,-25.4793 dDocent_Contig_12606 48 . A G 31.7521 . AB=0.103448;ABP=82.2316;AC=1;AF=0.166667;AN=6;AO=6;CIGAR=1X;DP=108;DPB=108;DPRA=2.32;EPP=16.0391;EPPR=90.2098;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=3.46945e-18;PAIRED=1;PAIREDR=0.990196;PAO=0;PQA=0;PQR=0;PRO=0;QA=242;QR=4020;RO=102;RPL=6;RPP=16.0391;RPPR=90.2098;RPR=0;RUN=1;SAF=6;SAP=16.0391;SAR=0;SRF=102;SRP=224.5;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:58:52,6:52:2079:6:242:-4.69779,0,-169.836 0/0:8:8,0:8:311:0:0:0,-2.40824,-28.3495 0/0:42:42,0:42:1630:0:0:0,-12.6433,-146.928 dDocent_Contig_12608 106 . N C 109.889 . AB=0;ABP=0;AC=4;AF=1;AN=4;AO=3;CIGAR=3X12I2M;DP=4;DPB=13.6;DPRA=0;EPP=9.52472;EPPR=0;GTI=0;LEN=1;MEANALT=1.5;MQM=60;MQMR=0;NS=2;NUMALT=1;ODDS=0;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=114;QR=0;RO=0;RPL=0;RPP=9.52472;RPPR=0;RPR=3;RUN=1;SAF=3;SAP=9.52472;SAR=0;SRF=0;SRP=0;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 1|1:3:0,2:0:0:2:76:-6.88895,-0.60206,0 .:.:.:.:.:.:.:. 1|1:1:0,1:0:0:1:38:-3.79727,-0.30103,0 dDocent_Contig_12609 129 . T A 486.257 . AB=0.0789474;ABP=61.5258;AC=0;AF=0;AN=6;AO=3;CIGAR=1X1M1X;DP=78;DPB=78;DPRA=0;EPP=9.52472;EPPR=113.755;GTI=0;LEN=1;MEANALT=2;MQM=60;MQMR=60;NS=3;NUMALT=2;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=102;QR=1700;RO=51;RPL=0;RPP=9.52472;RPPR=113.755;RPR=3;RUN=1;SAF=0;SAP=9.52472;SAR=3;SRF=0;SRP=113.755;SRR=51;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|0:38:28,3,7:28:932:3,7:102,250:-11.9639,-12.1245,-86.6259,0,-67.1434,-73.3103 0|0:16:6,0,10:6:193:0,10:0,347:-26.7462,-28.5524,-44.1019,0,-15.8806,-12.8703 0|0:24:17,0,7:17:575:0,7:0,248:-15.4385,-20.556,-67.1584,0,-46.9519,-44.8447 dDocent_Contig_12610 8 . T C 5715.87 . AB=0.577259;ABP=20.7936;AC=3;AF=0.5;AN=6;AO=198;CIGAR=1X;DP=343;DPB=343;DPRA=0;EPP=407.299;EPPR=317.874;GTI=0;LEN=1;MEANALT=1;MQM=59.9697;MQMR=60;NS=3;NUMALT=1;ODDS=1.38778e-17;PAIRED=0.969697;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=7553;QR=5533;RO=145;RPL=0;RPP=432.962;RPPR=317.874;RPR=198;RUN=1;SAF=195;SAP=407.299;SAR=3;SRF=145;SRP=317.874;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:226:88,138:88:3372:138:5251:-404.562,0,-235.587 0/1:55:30,25:30:1135:25:952:-69.437,0,-85.8965 0/1:62:27,35:27:1026:35:1350:-103.11,0,-73.9821 dDocent_Contig_12611 28 . A T 62.3732 . AB=0.25;ABP=9.52472;AC=1;AF=0.166667;AN=6;AO=3;CIGAR=2X;DP=23;DPB=23;DPRA=2.18182;EPP=9.52472;EPPR=46.4397;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=122;QR=797;RO=20;RPL=0;RPP=9.52472;RPPR=46.4397;RPR=3;RUN=1;SAF=3;SAP=9.52472;SAR=0;SRF=20;SRP=46.4397;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|1:12:9,3:9:362:3:122:-7.76013,0,-29.3314 0|0:5:5,0:5:200:0:0:0,-1.50515,-18.3795 0|0:6:6,0:6:235:0:0:0,-1.80618,-21.5209 dDocent_Contig_12612 7 . A T 284.404 . AB=0.228261;ABP=62.0177;AC=3;AF=0.5;AN=6;AO=21;CIGAR=1X;DP=92;DPB=92;DPRA=0;EPP=26.2761;EPPR=152.842;GTI=0;LEN=1;MEANALT=1.66667;MQM=39.381;MQMR=59.8986;NS=3;NUMALT=1;ODDS=0;PAIRED=0;PAIREDR=0.84058;PAO=0;PQA=0;PQR=0;PRO=0;QA=796;QR=2630;RO=69;RPL=0;RPP=48.6112;RPPR=152.842;RPR=21;RUN=1;SAF=18;SAP=26.2761;SAR=3;SRF=69;SRP=152.842;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:50:40,9:40:1528:9:351:-10.4693,0,-122.764 0/1:17:11,5:11:425:5:186:-8.5474,0,-33.4958 0/1:25:18,7:18:677:7:259:-14.9465,0,-53.7211 dDocent_Contig_12613 31 . G T 158.01 . AB=0.25;ABP=18.2106;AC=1;AF=0.166667;AN=6;AO=7;CIGAR=1X;DP=39;DPB=39;DPRA=5.09091;EPP=18.2106;EPPR=72.4974;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=282;QR=1285;RO=32;RPL=0;RPP=18.2106;RPPR=72.4974;RPR=7;RUN=1;SAF=7;SAP=18.2106;SAR=0;SRF=32;SRP=72.4974;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:28:21,7:21:848:7:282:-17.3238,0,-68.2025 0/0:4:4,0:4:164:0:0:0,-1.20412,-15.1499 0/0:7:7,0:7:273:0:0:0,-2.10721,-24.9326 dDocent_Contig_12614 77 . T C 35.9111 . AB=0.214286;ABP=12.937;AC=2;AF=0.333333;AN=6;AO=3;CIGAR=1X;DP=41;DPB=41;DPRA=0.259259;EPP=9.52472;EPPR=85.5263;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=1.73472e-18;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=117;QR=1456;RO=38;RPL=3;RPP=9.52472;RPPR=85.5263;RPR=0;RUN=1;SAF=3;SAP=9.52472;SAR=0;SRF=38;SRP=85.5263;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:27:27,0:27:1040:0:0:0,-8.12781,-93.9001 0/1:4:3,1:3:121:1:40:-2.79156,0,-10.0761 0/1:10:8,2:8:295:2:77:-4.29884,0,-23.8864 dDocent_Contig_12615 34 . T C 3124.52 . AB=0.796748;ABP=97.0898;AC=3;AF=0.5;AN=6;AO=98;CIGAR=2X;DP=123;DPB=123;DPRA=0;EPP=215.815;EPPR=55.1256;GTI=0;LEN=1;MEANALT=1.33333;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=6.93889e-18;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=3937;QR=945;RO=24;RPL=0;RPP=215.815;RPPR=55.1256;RPR=98;RUN=1;SAF=98;SAP=215.815;SAR=0;SRF=24;SRP=55.1256;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|1:75:11,63:11:435:63:2537:-205.774,0,-16.8134 0|1:6:3,3:3:120:3:119:-9.28883,0,-9.38151 0|1:42:10,32:10:390:32:1281:-102.912,0,-22.814 dDocent_Contig_12616 121 . G A 383.181 . AB=0.386364;ABP=7.94546;AC=2;AF=0.333333;AN=6;AO=17;CIGAR=1M1D1M1X4M1X;DP=50;DPB=49.5556;DPRA=0;EPP=39.9253;EPPR=42.0968;GTI=0;LEN=1;MEANALT=2.5;MQM=36.2941;MQMR=57.5556;NS=3;NUMALT=2;ODDS=0;PAIRED=0;PAIREDR=0.944444;PAO=0;PQA=0;PQR=0;PRO=0;QA=561;QR=590;RO=18;RPL=0;RPP=39.9253;RPPR=42.0968;RPR=17;RUN=1;SAF=0;SAP=39.9253;SAR=17;SRF=0;SRP=42.0968;SRR=18;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 1|0:25:5,11,8:5:159:11,8:361,229:-29.6718,-3.78996,-13.307,-14.5622,0,-24.9637 0|0:6:3,0,2:3:96:0,2:0,30:-0.741835,-1.64492,-7.92217,0,-6.34344,-5.74138 0|1:19:10,6,3:10:335:6,3:200,56:-12.161,0,-25.4598,-11.8448,-23.9288,-38.086 dDocent_Contig_12617 20 . T A 1553.75 . AB=0.625;ABP=10.6105;AC=4;AF=0.666667;AN=6;AO=51;CIGAR=1X;DP=73;DPB=73;DPRA=0;EPP=113.755;EPPR=50.7827;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=1985;QR=806;RO=22;RPL=0;RPP=113.755;RPPR=50.7827;RPR=51;RUN=1;SAF=51;SAP=113.755;SAR=0;SRF=22;SRP=50.7827;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:44:16,28:16:589:28:1086:-84.7932,0,-40.0996 1/1:17:1,16:1:39:16:625:-52.6892,-1.22095,0 0/1:12:5,7:5:178:7:274:-21.4152,0,-12.7551 dDocent_Contig_12618 8 . T C 170.473 . AB=0.157303;ABP=93.7974;AC=3;AF=0.5;AN=6;AO=14;CIGAR=1X;DP=89;DPB=89;DPRA=0;EPP=33.4109;EPPR=165.871;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=532;QR=2886;RO=75;RPL=0;RPP=33.4109;RPPR=165.871;RPR=14;RUN=1;SAF=14;SAP=33.4109;SAR=0;SRF=75;SRP=165.871;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:65:59,6:59:2268:6:232:-1.68198,0,-184.772 0/1:10:7,3:7:271:3:113:-7.52867,0,-21.746 0/1:14:9,5:9:347:5:187:-12.977,0,-27.3748 dDocent_Contig_12619 60 . C T 75.8633 . AB=0.266667;ABP=10.1038;AC=2;AF=0.333333;AN=6;AO=4;CIGAR=1X;DP=35;DPB=35;DPRA=0.375;EPP=11.6962;EPPR=70.3259;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=0.967742;PAO=0;PQA=0;PQR=0;PRO=0;QA=163;QR=1240;RO=31;RPL=4;RPP=11.6962;RPPR=70.3259;RPR=0;RUN=1;SAF=4;SAP=11.6962;SAR=0;SRF=31;SRP=70.3259;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:20:20,0:20:804:0:0:0,-6.0206,-72.6764 0/1:7:4,3:4:161:3:123:-9.35758,0,-12.7681 0/1:8:7,1:7:275:1:40:-1.58744,0,-22.7101 dDocent_Contig_12620 142 . T C 946.258 . AB=0.381443;ABP=14.8527;AC=3;AF=0.5;AN=6;AO=37;CIGAR=1X;DP=97;DPB=97;DPRA=0;EPP=83.3548;EPPR=55.1637;GTI=0;LEN=1;MEANALT=1.33333;MQM=60;MQMR=43.4561;NS=3;NUMALT=1;ODDS=6.93889e-18;PAIRED=0;PAIREDR=0.614035;PAO=0;PQA=0;PQR=0;PRO=0;QA=1418;QR=2141;RO=57;RPL=0;RPP=83.3548;RPPR=102.098;RPR=37;RUN=1;SAF=0;SAP=83.3548;SAR=37;SRF=13;SRP=39.6206;SRR=44;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:71:40,28:40:1500:28:1086:-77.3738,0,-79.7412 0/1:10:4,6:4:164:6:215:-16.6788,0,-3.64363 0/1:16:13,3:13:477:3:117:-6.09281,0,-38.4469 dDocent_Contig_12621 12 . T C 858.072 . AB=0.305263;ABP=34.3024;AC=3;AF=0.5;AN=6;AO=29;CIGAR=5M1X;DP=95;DPB=104.333;DPRA=0;EPP=65.983;EPPR=92.0407;GTI=0;LEN=1;MEANALT=3;MQM=60;MQMR=56.9268;NS=3;NUMALT=4;ODDS=0;PAIRED=1;PAIREDR=0.902439;PAO=0;PQA=0;PQR=0;PRO=0;QA=1161;QR=1572;RO=41;RPL=0;RPP=65.983;RPPR=92.0407;RPR=29;RUN=1;SAF=29;SAP=65.983;SAR=0;SRF=41;SRP=92.0407;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|1:60:31,2,5,0,22:31:1198:2,5,0,22:26,200,0,889:-64.0257,-72.1625,-166.913,-56.8786,-151.038,-150.739,-73.3576,-167.515,-152.244,-168.721,0,-94.2153,-78.9359,-95.4166,-88.794 1|1:21:1,11,3,0,5:1:39:11,3,0,5:142,120,0,190:-22.0488,-15.89,-15.788,-12.432,-9.19658,-14.7463,-22.3498,-19.0993,-15.6494,-25.564,-6.71697,-3.50046,0,-9.9372,-8.43205 0|0:14:9,0,0,3,2:9:335:0,0,3,2:0,0,99,82:-5.24542,-7.95469,-35.3795,-7.95469,-35.3795,-35.3795,0,-27.3876,-27.3876,-26.4845,-1.15468,-28.6045,-28.6045,-20.6126,-28.0025 dDocent_Contig_12622 62 . A C 34.127 . AB=0.176471;ABP=18.4661;AC=1;AF=0.166667;AN=6;AO=9;CIGAR=1X;DP=110;DPB=110;DPRA=2.25;EPP=22.5536;EPPR=222.329;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=333;QR=3457;RO=101;RPL=9;RPP=22.5536;RPPR=222.329;RPR=0;RUN=1;SAF=9;SAP=22.5536;SAR=0;SRF=101;SRP=222.329;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:73:67,6:67:2268:6:222:0,-1.63713,-184.025 0/1:17:14,3:14:494:3:111:-5.23641,0,-39.6749 0/0:20:20,0:20:695:0:0:0,-6.0206,-62.8723 dDocent_Contig_12624 11 . G A 408.842 . AB=0.517241;ABP=3.08518;AC=3;AF=0.5;AN=6;AO=15;CIGAR=1X;DP=29;DPB=29;DPRA=0;EPP=35.5824;EPPR=33.4109;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=3.46945e-18;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=600;QR=562;RO=14;RPL=0;RPP=35.5824;RPPR=33.4109;RPR=15;RUN=1;SAF=15;SAP=35.5824;SAR=0;SRF=14;SRP=33.4109;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:11:5,6:5:204:6:242:-18.8456,0,-15.4327 0/1:12:7,5:7:280:5:195:-14.3091,0,-21.9568 0/1:6:2,4:2:78:4:163:-13.2522,0,-5.5966 dDocent_Contig_12625 23 . G A 311.718 . AB=0.302326;ABP=17.6046;AC=2;AF=0.333333;AN=6;AO=13;CIGAR=1X;DP=46;DPB=46;DPRA=7.16667;EPP=31.2394;EPPR=74.6689;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=521;QR=1304;RO=33;RPL=0;RPP=31.2394;RPPR=74.6689;RPR=13;RUN=1;SAF=13;SAP=31.2394;SAR=0;SRF=33;SRP=74.6689;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:22:17,5:17:674:5:204:-12.1214,0,-54.3659 0/0:3:3,0:3:120:0:0:0,-0.90309,-11.1873 0/1:21:13,8:13:510:8:317:-22.5732,0,-39.9192 dDocent_Contig_12626 39 . G C 5351.95 . AB=0.727679;ABP=103.867;AC=5;AF=0.833333;AN=6;AO=163;CIGAR=1X4M;DP=224;DPB=224;DPRA=0;EPP=356.96;EPPR=81.1833;GTI=0;LEN=1;MEANALT=2.66667;MQM=60;MQMR=60;NS=3;NUMALT=2;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=6516;QR=1380;RO=36;RPL=0;RPP=356.96;RPPR=81.1833;RPR=163;RUN=1;SAF=163;SAP=356.96;SAR=0;SRF=36;SRP=81.1833;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|1:131:27,8,92:27:1046:8,92:312,3669:-294.009,-276.491,-360.01,0,-60.2788,-58.2306 1|1:26:4,4,18:4:158:4,18:159,718:-58.0166,-46.1299,-57.927,-0.091681,0,-7.67382 1|1:67:5,9,53:5:176:9,53:352,2129:-188.589,-161.154,-172.764,-14.6566,0,-13.012 dDocent_Contig_12627 14 . C G 396.317 . AB=0.243243;ABP=45.3834;AC=2;AF=0.333333;AN=6;AO=18;CIGAR=1X;DP=106;DPB=106;DPRA=1.15625;EPP=42.0968;EPPR=194.1;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=719;QR=3546;RO=88;RPL=0;RPP=42.0968;RPPR=194.1;RPR=18;RUN=1;SAF=18;SAP=42.0968;SAR=0;SRF=88;SRP=194.1;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:37:30,7:30:1200:7:275:-13.9765,0,-97.1288 0/1:37:26,11:26:1051:11:444:-29.1781,0,-83.7416 0/0:32:32,0:32:1295:0:0:0,-9.63296,-116.808 dDocent_Contig_12628 38 . T C 92.3078 . AB=0.25;ABP=11.6962;AC=1;AF=0.166667;AN=6;AO=4;CIGAR=2M1X;DP=25;DPB=26;DPRA=2.28571;EPP=11.6962;EPPR=42.0968;GTI=0;LEN=1;MEANALT=2;MQM=60;MQMR=60;NS=3;NUMALT=2;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=164;QR=706;RO=18;RPL=0;RPP=11.6962;RPPR=42.0968;RPR=4;RUN=1;SAF=4;SAP=11.6962;SAR=0;SRF=18;SRP=42.0968;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|1:16:10,2,4:10:386:2,4:20,164:-10.7509,-13.1775,-44.2503,0,-31.3092,-30.749 0|0:7:7,0,0:7:280:0,0:0,0:0,-2.10721,-25.5716,-2.10721,-25.5716,-25.5716 0|0:2:1,1,0:1:40:1,0:10,0:-0.119186,0,-3.39362,-0.420216,-3.69465,-3.87902 dDocent_Contig_12629 20 . C A 131.989 . AB=0.113636;ABP=231.212;AC=3;AF=0.5;AN=6;AO=20;CIGAR=1X;DP=176;DPB=176;DPRA=0;EPP=46.4397;EPPR=341.76;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=59.7179;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=780;QR=6213;RO=156;RPL=0;RPP=46.4397;RPPR=341.76;RPR=20;RUN=1;SAF=20;SAP=46.4397;SAR=0;SRF=156;SRP=341.76;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:100:91,9:91:3656:9:349:-1.65853,0,-298.947 0/1:26:22,4:22:887:4:161:-7.04849,0,-70.0539 0/1:50:43,7:43:1670:7:270:-9.61189,0,-135.464 dDocent_Contig_12630 1 . N G 66.4848 . AB=0;ABP=0;AC=2;AF=1;AN=2;AO=2;CIGAR=1X3M1X;DP=2;DPB=2;DPRA=0;EPP=7.35324;EPPR=0;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=0;NS=1;NUMALT=1;ODDS=5.99146;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=70;QR=0;RO=0;RPL=0;RPP=7.35324;RPPR=0;RPR=2;RUN=1;SAF=0;SAP=7.35324;SAR=2;SRF=0;SRP=0;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL .:.:.:.:.:.:.:. 1|1:2:0,2:0:0:2:70:-6.6474,-0.60206,0 .:.:.:.:.:.:.:. dDocent_Contig_12631 14 . G C 120.336 . AB=0.416667;ABP=3.73412;AC=2;AF=0.333333;AN=6;AO=5;CIGAR=1X;DP=23;DPB=23;DPRA=0.545455;EPP=13.8677;EPPR=42.0968;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=0;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=204;QR=734;RO=18;RPL=0;RPP=13.8677;RPPR=42.0968;RPR=5;RUN=1;SAF=5;SAP=13.8677;SAR=0;SRF=18;SRP=42.0968;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:4:1,3:1:41:3:123:-10.2607,0,-2.89045 0/0:11:11,0:11:449:0:0:0,-3.31133,-40.7657 0/1:8:6,2:6:244:2:81:-5.27749,0,-19.9306 dDocent_Contig_12632 8 . T A 88.3141 . AB=0.142857;ABP=72.8076;AC=2;AF=0.333333;AN=6;AO=9;CIGAR=1X3M1X;DP=83;DPB=83;DPRA=1.575;EPP=22.5536;EPPR=161.528;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=340;QR=2853;RO=73;RPL=0;RPP=22.5536;RPPR=161.528;RPR=9;RUN=1;SAF=9;SAP=22.5536;SAR=0;SRF=73;SRP=161.528;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|1:52:46,6:46:1795:6:233:-5.68582,0,-146.136 0|1:11:8,3:8:315:3:107:-6.66843,0,-25.4045 0|0:20:19,0:19:743:0:0:0,-5.71957,-66.94 dDocent_Contig_12633 33 . T G 1784.14 . AB=0.09375;ABP=48.8827;AC=4;AF=0.666667;AN=6;AO=3;CIGAR=2X2M1X3M;DP=83;DPB=83;DPRA=0;EPP=9.52472;EPPR=44.2683;GTI=0;LEN=1;MEANALT=2;MQM=60;MQMR=60;NS=3;NUMALT=3;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=107;QR=753;RO=19;RPL=0;RPP=9.52472;RPPR=44.2683;RPR=3;RUN=1;SAF=3;SAP=9.52472;SAR=0;SRF=19;SRP=44.2683;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|1:40:13,0,25,0:13:517:0,25,0:0,982,0:-76.87,-80.7834,-123.352,0,-42.586,-35.0603,-80.7834,-123.352,-42.586,-123.352 0|1:32:6,0,23,3:6:236:0,23,3:0,884,107:-70.781,-72.5871,-92.0014,0,-19.4362,-12.5125,-63.8682,-83.282,-10.7263,-82.3789 1|1:11:0,2,9,0:0:0:2,9,0:80,356,0:-36.285,-29.6941,-29.092,-6.98973,0,-4.28046,-36.285,-29.6941,-6.98973,-36.285 dDocent_Contig_12634 98 . N G 62.6944 . AB=0;ABP=0;AC=2;AF=1;AN=2;AO=2;CIGAR=1X;DP=2;DPB=2;DPRA=0;EPP=7.35324;EPPR=0;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=0;NS=1;NUMALT=1;ODDS=5.99146;PAIRED=1;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=66;QR=0;RO=0;RPL=2;RPP=7.35324;RPPR=0;RPR=0;RUN=1;SAF=2;SAP=7.35324;SAR=0;SRF=0;SRP=0;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 1/1:2:0,2:0:0:2:66:-6.26836,-0.60206,0 ./.:.:.:.:.:.:.:. ./.:.:.:.:.:.:.:. dDocent_Contig_12635 28 . A G 356.382 . AB=0.368421;ABP=8.7247;AC=2;AF=0.333333;AN=6;AO=15;CIGAR=1X3M1X;DP=52;DPB=52;DPRA=0;EPP=35.5824;EPPR=81.1833;GTI=0;LEN=1;MEANALT=1.33333;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=595;QR=1405;RO=36;RPL=0;RPP=35.5824;RPPR=81.1833;RPR=15;RUN=1;SAF=15;SAP=35.5824;SAR=0;SRF=36;SRP=81.1833;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|1:31:22,9:22:840:9:356:-23.0697,0,-66.5798 0|1:7:2,5:2:80:5:198:-16.0905,0,-5.48458 0|0:14:12,1:12:485:1:41:0,-0.228279,-39.9079 dDocent_Contig_12636 27 . T C 691.945 . AB=0.581395;ABP=5.48477;AC=3;AF=0.5;AN=6;AO=25;CIGAR=1X;DP=43;DPB=43;DPRA=0;EPP=57.2971;EPPR=42.0968;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=962;QR=698;RO=18;RPL=0;RPP=57.2971;RPPR=42.0968;RPR=25;RUN=1;SAF=25;SAP=57.2971;SAR=0;SRF=18;SRP=42.0968;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:18:7,11:7:260:11:419:-32.6397,0,-18.3324 0/1:15:7,8:7:278:8:305:-23.2934,0,-20.8755 0/1:10:4,6:4:160:6:238:-18.7842,0,-11.7737 dDocent_Contig_12637 80 . C T 211.195 . AB=0.342857;ABP=10.5174;AC=3;AF=0.5;AN=6;AO=12;CIGAR=1X;DP=35;DPB=35;DPRA=0;EPP=29.068;EPPR=52.9542;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=402;QR=749;RO=23;RPL=12;RPP=29.068;RPPR=52.9542;RPR=0;RUN=1;SAF=12;SAP=29.068;SAR=0;SRF=23;SRP=52.9542;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:11:8,3:8:269:3:105:-6.48483,0,-21.2261 0/1:12:8,4:8:245:4:134:-8.77852,0,-18.7384 0/1:12:7,5:7:235:5:163:-11.379,0,-17.8661 dDocent_Contig_12638 13 . T G 234.575 . AB=0.344828;ABP=9.07545;AC=3;AF=0.5;AN=6;AO=10;CIGAR=1X;DP=29;DPB=29;DPRA=0;EPP=24.725;EPPR=44.2683;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=0.5;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=406;QR=764;RO=19;RPL=0;RPP=24.725;RPPR=44.2683;RPR=10;RUN=1;SAF=10;SAP=24.725;SAR=0;SRF=19;SRP=44.2683;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:15:9,6:9:360:6:244:-17.8232,0,-28.2467 0/1:4:2,2:2:78:2:82:-6.57556,0,-6.19918 0/1:10:8,2:8:326:2:80:-4.58128,0,-26.6996 dDocent_Contig_12640 70 . A G 48.9473 . AB=0.230769;ABP=11.1951;AC=1;AF=0.166667;AN=6;AO=3;CIGAR=1X;DP=57;DPB=57;DPRA=0.590909;EPP=9.52472;EPPR=120.27;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=8.67362e-19;PAIRED=0.666667;PAIREDR=0.777778;PAO=0;PQA=0;PQR=0;PRO=0;QA=114;QR=2085;RO=54;RPL=3;RPP=9.52472;RPPR=120.27;RPR=0;RUN=1;SAF=3;SAP=9.52472;SAR=0;SRF=54;SRP=120.27;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:39:39,0:39:1497:0:0:0,-11.7402,-134.978 0/1:13:10,3:10:395:3:114:-6.71859,0,-31.9956 0/0:5:5,0:5:193:0:0:0,-1.50515,-17.7415 dDocent_Contig_12641 118 . C A 38.304 . AB=0.5;ABP=3.0103;AC=1;AF=0.166667;AN=6;AO=2;CIGAR=1X;DP=15;DPB=15;DPRA=0.727273;EPP=7.35324;EPPR=16.5402;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=54.6154;NS=3;NUMALT=1;ODDS=0;PAIRED=0;PAIREDR=0.846154;PAO=0;PQA=0;PQR=0;PRO=0;QA=69;QR=456;RO=13;RPL=0;RPP=7.35324;RPPR=31.2394;RPR=2;RUN=1;SAF=0;SAP=7.35324;SAR=2;SRF=2;SRP=16.5402;SRR=11;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:4:2,2:2:74:2:69:-5.34854,0,-3.49555 0/0:5:5,0:5:170:0:0:0,-1.50515,-15.6335 0/0:6:6,0:6:212:0:0:0,-1.80618,-19.4248 dDocent_Contig_12642 29 . T C 1308.38 . AB=0.54878;ABP=4.70511;AC=3;AF=0.5;AN=6;AO=45;CIGAR=1X;DP=82;DPB=82;DPRA=0;EPP=100.727;EPPR=83.3548;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=0.945946;PAO=0;PQA=0;PQR=0;PRO=0;QA=1778;QR=1436;RO=37;RPL=0;RPP=100.727;RPPR=83.3548;RPR=45;RUN=1;SAF=45;SAP=100.727;SAR=0;SRF=37;SRP=83.3548;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:44:23,21:23:890:21:830:-61.7607,0,-67.1695 0/1:35:13,22:13:505:22:866:-67.7146,0,-35.2611 0/1:3:1,2:1:41:2:82:-6.87659,0,-3.19148 dDocent_Contig_12644 12 . G A 123.172 . AB=0;ABP=0;AC=4;AF=1;AN=4;AO=7;CIGAR=1X3M1X;DP=7;DPB=7;DPRA=0;EPP=18.2106;EPPR=0;GTI=0;LEN=1;MEANALT=1;MQM=18.5714;MQMR=0;NS=2;NUMALT=1;ODDS=0;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=259;QR=0;RO=0;RPL=0;RPP=18.2106;RPPR=0;RPR=7;RUN=1;SAF=7;SAP=18.2106;SAR=0;SRF=0;SRP=0;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 1|1:6:0,6:0:0:6:222:-10.4129,-1.80618,0 1|1:1:0,1:0:0:1:37:-1.59665,-0.30103,0 .:.:.:.:.:.:.:. dDocent_Contig_12647 54 . C A 258.331 . AB=0.192308;ABP=67.1523;AC=2;AF=0.5;AN=4;AO=15;CIGAR=1X;DP=78;DPB=78;DPRA=0;EPP=35.5824;EPPR=139.813;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=2;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=581;QR=2483;RO=63;RPL=15;RPP=35.5824;RPPR=139.813;RPR=0;RUN=1;SAF=15;SAP=35.5824;SAR=0;SRF=63;SRP=139.813;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:58:49,9:49:1921:9:337:-13.2138,0,-155.63 ./.:.:.:.:.:.:.:. 0/1:20:14,6:14:562:6:244:-16.3182,0,-44.9 dDocent_Contig_12648 104 . N A 157.477 . AB=0;ABP=0;AC=4;AF=1;AN=4;AO=5;CIGAR=4X;DP=5;DPB=5;DPRA=0;EPP=13.8677;EPPR=0;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=0;NS=2;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=165;QR=0;RO=0;RPL=0;RPP=13.8677;RPPR=0;RPR=5;RUN=1;SAF=0;SAP=13.8677;SAR=5;SRF=0;SRP=0;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 1|1:1:0,1:0:0:1:25:-2.49986,-0.30103,0 .:.:.:.:.:.:.:. 1|1:4:0,4:0:0:4:140:-12.9449,-1.20412,0 dDocent_Contig_12649 13 . C T 177.144 . AB=0.666667;ABP=5.18177;AC=1;AF=0.166667;AN=6;AO=6;CIGAR=1X;DP=55;DPB=55;DPRA=0.391304;EPP=16.0391;EPPR=109.412;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=243;QR=1982;RO=49;RPL=0;RPP=16.0391;RPPR=109.412;RPR=6;RUN=1;SAF=6;SAP=16.0391;SAR=0;SRF=49;SRP=109.412;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:33:33,0:33:1334:0:0:0,-9.93399,-120.317 0/0:13:13,0:13:527:0:0:0,-3.91339,-47.7763 0/1:9:3,6:3:121:6:243:-19.5383,0,-8.57093 dDocent_Contig_12650 7 . A T 125.726 . AB=0.0888889;ABP=69.0713;AC=0;AF=0;AN=6;AO=4;CIGAR=2X1M1X3M1X;DP=49;DPB=49;DPRA=5.625;EPP=11.6962;EPPR=81.1833;GTI=0;LEN=1;MEANALT=2.5;MQM=59;MQMR=60;NS=3;NUMALT=3;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=156;QR=1399;RO=36;RPL=0;RPP=11.6962;RPPR=81.1833;RPR=4;RUN=1;SAF=4;SAP=11.6962;SAR=0;SRF=36;SRP=81.1833;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|0:33:26,3,0,4:26:1015:3,0,4:119,0,163:-5.62673,-3.6649,-86.1864,-13.4535,-87.0894,-96.883,0,-73.6399,-83.4337,-82.2296 0|0:12:6,1,4,1:6:230:1,4,1:37,150,41:-10.4684,-9.25006,-27.8275,0,-15.8484,-17.6686,-8.88455,-24.7417,-15.4851,-27.4663 0|0:4:4,0,0,0:4:154:0,0,0:0,0,0:0,-1.20412,-14.2333,-1.20412,-14.2333,-14.2333,-1.20412,-14.2333,-14.2333,-14.2333 dDocent_Contig_12651 9 . C T 185.237 . AB=0.0731707;ABP=67.8897;AC=0;AF=0;AN=6;AO=3;CIGAR=1X2M1X;DP=71;DPB=71;DPRA=4.55556;EPP=9.52472;EPPR=126.784;GTI=0;LEN=1;MEANALT=2;MQM=36.6667;MQMR=59.9123;NS=3;NUMALT=2;ODDS=0;PAIRED=0;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=118;QR=2194;RO=57;RPL=0;RPP=9.52472;RPPR=126.784;RPR=3;RUN=1;SAF=3;SAP=9.52472;SAR=0;SRF=57;SRP=126.784;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|0:41:30,3,8:30:1168:3,8:118,321:-17.458,-18.1067,-113.188,0,-87.6404,-93.6258 0|0:21:18,0,3:18:677:0,3:0,117:-4.5882,-10.0067,-65.4578,0,-55.8387,-54.9356 0|0:9:9,0,0:9:349:0,0:0,0:0,-2.70927,-31.7618,-2.70927,-31.7618,-31.7618 dDocent_Contig_12652 8 . T C 2132.69 . AB=0.0674157;ABP=147.669;AC=4;AF=0.666667;AN=6;AO=7;CIGAR=1X4M;DP=101;DPB=101;DPRA=0;EPP=18.2106;EPPR=55.1256;GTI=0;LEN=1;MEANALT=2;MQM=60;MQMR=60;NS=3;NUMALT=2;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=262;QR=926;RO=24;RPL=0;RPP=18.2106;RPPR=55.1256;RPR=7;RUN=1;SAF=7;SAP=18.2106;SAR=0;SRF=24;SRP=55.1256;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|1:55:18,34,3:18:692:34,3:1303,115:-101.518,0,-46.5719,-97.4973,-47.3683,-153.401 1|1:12:0,11,1:0:0:11,1:422,32:-38.007,-3.31133,0,-35.4339,-0.413047,-35.1329 0|1:34:6,25,3:6:234:25,3:963,115:-77.267,0,-11.7133,-69.6346,-9.80249,-87.9671 dDocent_Contig_12653 10 . G A 2816.45 . AB=0.679104;ABP=40.3467;AC=3;AF=0.5;AN=6;AO=91;CIGAR=1X;DP=134;DPB=134;DPRA=0;EPP=200.614;EPPR=96.3836;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=3630;QR=1709;RO=43;RPL=0;RPP=200.614;RPPR=96.3836;RPR=91;RUN=1;SAF=91;SAP=200.614;SAR=0;SRF=43;SRP=96.3836;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:99:24,75:24:955:75:2998:-240.098,0,-56.4499 0/1:11:5,6:5:194:6:235:-18.2083,0,-14.5206 0/1:24:14,10:14:560:10:397:-28.8619,0,-43.5159 dDocent_Contig_12654 10 . G A 404.562 . AB=0.636364;ABP=6.56362;AC=2;AF=0.333333;AN=6;AO=14;CIGAR=1X;DP=28;DPB=28;DPRA=1.83333;EPP=33.4109;EPPR=33.4109;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=554;QR=563;RO=14;RPL=0;RPP=33.4109;RPPR=33.4109;RPR=14;RUN=1;SAF=14;SAP=33.4109;SAR=0;SRF=14;SRP=33.4109;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:10:6,4:6:243:4:162:-11.9567,0,-19.2379 0/0:6:6,0:6:241:0:0:0,-1.80618,-22.0658 0/1:12:2,10:2:79:10:392:-32.0205,0,-3.88488 dDocent_Contig_12655 45 . A G 72.775 . AB=0.1875;ABP=16.582;AC=4;AF=0.666667;AN=6;AO=4;CIGAR=1X;DP=17;DPB=17;DPRA=0;EPP=11.6962;EPPR=31.2394;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=0.75;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=152;QR=515;RO=13;RPL=0;RPP=11.6962;RPPR=31.2394;RPR=4;RUN=1;SAF=4;SAP=11.6962;SAR=0;SRF=13;SRP=31.2394;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 1/1:1:0,1:0:0:1:32:-3.19931,-0.30103,0 0/1:9:8,1:8:316:1:39:-1.18729,0,-26.0964 0/1:7:5,2:5:199:2:81:-5.57852,0,-16.1814 dDocent_Contig_12656 77 . T C 894.068 . AB=0.586207;ABP=6.75422;AC=2;AF=0.333333;AN=6;AO=34;CIGAR=3M1X;DP=62;DPB=61.5;DPRA=7.25;EPP=76.8404;EPPR=57.2971;GTI=0;LEN=1;MEANALT=2;MQM=60;MQMR=60;NS=3;NUMALT=2;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=1214;QR=862;RO=25;RPL=34;RPP=76.8404;RPPR=57.2971;RPR=0;RUN=1;SAF=34;SAP=76.8404;SAR=0;SRF=25;SRP=57.2971;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|1:32:12,0,19:12:412:0,19:0,680:-52.1119,-55.7243,-89.1789,0,-33.7069,-27.9873 0|0:4:4,0,0:4:138:0,0:0,0:0,-1.20412,-12.7604,-1.20412,-12.7604,-12.7604 0|1:26:9,2,15:9:312:2,15:70,534:-40.8176,-37.8322,-62.587,0,-19.6617,-20.8422 dDocent_Contig_12657 40 . C T 3144.07 . AB=0.557895;ABP=8.54184;AC=3;AF=0.5;AN=6;AO=106;CIGAR=1X;DP=190;DPB=190;DPRA=0;EPP=233.186;EPPR=108.895;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=4182;QR=3329;RO=84;RPL=0;RPP=233.186;RPPR=108.895;RPR=106;RUN=1;SAF=106;SAP=233.186;SAR=0;SRF=84;SRP=185.414;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:115:41,74:41:1636:74:2937:-229.81,0,-112.846 0/1:34:15,19:15:573:19:754:-57.9461,0,-41.6737 0/1:41:28,13:28:1120:13:491:-32.1742,0,-88.7391 dDocent_Contig_12659 10 . G A 204.975 . AB=0.583333;ABP=3.73412;AC=1;AF=0.166667;AN=6;AO=9;CIGAR=1X;DP=64;DPB=64;DPRA=1.27778;EPP=22.5536;EPPR=122.441;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=364;QR=2154;RO=55;RPL=0;RPP=22.5536;RPPR=122.441;RPR=9;RUN=1;SAF=9;SAP=22.5536;SAR=0;SRF=55;SRP=122.441;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:18:18,0:18:723:0:0:0,-5.41854,-65.396 0/0:34:32,2:32:1233:2:80:0,-2.64323,-103.65 0/1:12:5,7:5:198:7:284:-22.3214,0,-14.5845 dDocent_Contig_12660 24 . G T 347.719 . AB=0.304348;ABP=18.305;AC=2;AF=0.333333;AN=6;AO=15;CIGAR=1X;DP=60;DPB=60;DPRA=0;EPP=35.5824;EPPR=100.727;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=3.46945e-18;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=612;QR=1755;RO=45;RPL=0;RPP=35.5824;RPPR=100.727;RPR=15;RUN=1;SAF=15;SAP=35.5824;SAR=0;SRF=45;SRP=100.727;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:39:27,12:27:1044:12:489:-32.6211,0,-82.5159 0/0:14:13,1:13:511:1:41:0,-0.119853,-42.2373 0/1:7:5,2:5:200:2:82:-5.67247,0,-16.2712 dDocent_Contig_12662 8 . T A 2151.1 . AB=0.0666667;ABP=76.4061;AC=0;AF=0;AN=6;AO=3;CIGAR=3X2M1X1M1X;DP=177;DPB=177;DPRA=0;EPP=9.52472;EPPR=165.871;GTI=0;LEN=1;MEANALT=2;MQM=56;MQMR=60;NS=3;NUMALT=5;ODDS=0;PAIRED=1;PAIREDR=0.946667;PAO=0;PQA=0;PQR=0;PRO=0;QA=120;QR=2940;RO=75;RPL=0;RPP=9.52472;RPPR=165.871;RPR=3;RUN=1;SAF=3;SAP=9.52472;SAR=0;SRF=75;SRP=165.871;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|0:90:37,5,0,2,40,0:37:1452:5,0,2,40,0:202,0,79,1498,0:-109.826,-104.308,-222.229,-120.965,-223.734,-240.389,-114.463,-217.233,-233.888,-233.286,0,-102.77,-119.425,-112.924,-107.384,-120.965,-223.734,-240.389,-233.888,-119.425,-240.389 0|0:45:20,0,3,0,22,0:20:777:0,3,0,22,0:0,120,0,881,0:-66.5162,-72.5368,-136.378,-62.6691,-126.51,-125.607,-72.5368,-136.378,-126.51,-136.378,0,-63.8372,-53.9679,-63.8372,-57.2145,-72.5368,-136.378,-126.51,-136.378,-63.8372,-136.378 0|0:42:18,0,0,3,15,3:18:711:0,0,3,15,3:0,0,117,605,115:-44.2902,-49.7088,-108.218,-49.7088,-108.218,-108.218,-40.0919,-98.6014,-98.6014,-97.6983,0,-58.5207,-58.5207,-48.9034,-54.0053,-40.2812,-98.7902,-98.7902,-89.1734,-49.0925,-97.8871 dDocent_Contig_12663 14 . T G 659.174 . AB=0.589744;ABP=5.73856;AC=2;AF=0.333333;AN=6;AO=23;CIGAR=1X3M1X;DP=59;DPB=59;DPRA=0.975;EPP=52.9542;EPPR=72.4974;GTI=0;LEN=1;MEANALT=1.5;MQM=60;MQMR=60;NS=3;NUMALT=2;ODDS=0;PAIRED=0;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=892;QR=1238;RO=32;RPL=0;RPP=52.9542;RPPR=72.4974;RPR=23;RUN=1;SAF=23;SAP=52.9542;SAR=0;SRF=32;SRP=72.4974;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|1:26:11,13,2:11:411:13,2:510,81:-38.6216,0,-29.7073,-35.2521,-26.9367,-68.2886 0|1:13:3,10,0:3:117:10,0:382,0:-30.8187,0,-6.99682,-31.7217,-10.0071,-41.3411 0|0:20:18,0,1:18:710:0,1:0,40:0,-5.41854,-63.8457,-2.10857,-60.5503,-60.2493 dDocent_Contig_12664 106 . N C 399.75 . AB=0;ABP=0;AC=4;AF=1;AN=4;AO=14;CIGAR=2X;DP=14;DPB=14;DPRA=0;EPP=33.4109;EPPR=0;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=0;NS=2;NUMALT=1;ODDS=0;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=434;QR=0;RO=0;RPL=0;RPP=33.4109;RPPR=0;RPR=14;RUN=1;SAF=14;SAP=33.4109;SAR=0;SRF=0;SRP=0;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 1|1:8:0,8:0:0:8:241:-21.9862,-2.40824,0 .:.:.:.:.:.:.:. 1|1:6:0,6:0:0:6:193:-17.6877,-1.80618,0 dDocent_Contig_12665 17 . C T 414.471 . AB=0.235294;ABP=54.7424;AC=3;AF=0.5;AN=6;AO=20;CIGAR=1X;DP=85;DPB=85;DPRA=0;EPP=46.4397;EPPR=144.156;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=794;QR=2606;RO=65;RPL=0;RPP=46.4397;RPPR=144.156;RPR=20;RUN=1;SAF=20;SAP=46.4397;SAR=0;SRF=65;SRP=144.156;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:41:27,14:27:1091:14:569:-39.21,0,-86.1338 0/1:15:12,3:12:475:3:102:-4.99904,0,-38.5836 0/1:29:26,3:26:1040:3:123:-2.73492,0,-85.1628 dDocent_Contig_12667 10 . G A 12381.7 . AB=0.0880503;ABP=940.485;AC=4;AF=0.666667;AN=6;AO=56;CIGAR=1X3M;DP=636;DPB=636;DPRA=0;EPP=124.613;EPPR=200.614;GTI=0;LEN=1;MEANALT=7;MQM=59.625;MQMR=60;NS=3;NUMALT=4;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=2253;QR=3592;RO=91;RPL=0;RPP=124.613;RPPR=200.614;RPR=56;RUN=1;SAF=56;SAP=124.613;SAR=0;SRF=91;SRP=200.614;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 1|1:288:30,186,6,35,26:30:1188:186,6,35,26:7317,233,1419,1042:-607.731,-19.2007,-60.986,-598.106,-98.3221,-694.078,-499.786,0,-578.908,-587.029,-530.914,-31.1303,-610.037,-511.717,-620.866 0|1:154:37,88,10,11,5:37:1461:88,10,11,5:3499,373,439,202:-272.367,0,-93.7249,-253.031,-89.7439,-370.235,-247.349,-84.0592,-337.089,-364.252,-266.851,-103.561,-356.591,-350.91,-385.56 0|1:194:24,117,15,10,23:24:943:117,15,10,23:4581,578,395,906:-363.594,0,-42.3423,-324.931,-31.6778,-397.978,-338.32,-45.0637,-369.994,-412.872,-296.286,-3.02956,-327.961,-341.349,-366.925 dDocent_Contig_12669 10 . G A 88.3657 . AB=0.285714;ABP=8.59409;AC=1;AF=0.166667;AN=6;AO=7;CIGAR=1X;DP=87;DPB=87;DPRA=1.3913;EPP=18.2106;EPPR=176.728;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=59.725;NS=3;NUMALT=1;ODDS=0;PAIRED=0;PAIREDR=0.2;PAO=0;PQA=0;PQR=0;PRO=0;QA=281;QR=3174;RO=80;RPL=0;RPP=18.2106;RPPR=176.728;RPR=7;RUN=1;SAF=7;SAP=18.2106;SAR=0;SRF=80;SRP=176.728;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:50:47,3:47:1873:3:120:0,-3.86419,-157.585 0/0:23:23,0:23:902:0:0:0,-6.92369,-81.4774 0/1:14:10,4:10:399:4:161:-10.6605,0,-31.6237 dDocent_Contig_12671 12 . C T 1038.91 . AB=0.322835;ABP=37.6342;AC=3;AF=0.5;AN=6;AO=41;CIGAR=1X;DP=127;DPB=127;DPRA=0;EPP=92.0407;EPPR=189.757;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=0.976744;PAO=0;PQA=0;PQR=0;PRO=0;QA=1629;QR=3426;RO=86;RPL=0;RPP=92.0407;RPPR=189.757;RPR=41;RUN=1;SAF=41;SAP=92.0407;SAR=0;SRF=86;SRP=189.757;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:76:51,25:51:2036:25:990:-66.5223,0,-160.556 0/1:21:13,8:13:514:8:319:-22.7553,0,-40.2861 0/1:30:22,8:22:876:8:320:-20.1364,0,-70.1209 dDocent_Contig_12672 63 . T C 499.369 . AB=0.258065;ABP=34.5317;AC=4;AF=0.666667;AN=6;AO=20;CIGAR=1X;DP=66;DPB=66;DPRA=0;EPP=46.4397;EPPR=102.898;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=789;QR=1845;RO=46;RPL=20;RPP=46.4397;RPPR=102.898;RPR=0;RUN=1;SAF=20;SAP=46.4397;SAR=0;SRF=46;SRP=102.898;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:27:15,12:15:604:12:465:-34.0618,0,-46.5714 1/1:4:0,4:0:0:4:163:-15.0584,-1.20412,0 0/1:35:31,4:31:1241:4:161:-4.33885,0,-101.424 dDocent_Contig_12673 87 . C A 77.6163 . AB=0.363636;ABP=4.78696;AC=1;AF=0.166667;AN=6;AO=4;CIGAR=2X;DP=35;DPB=35;DPRA=0.916667;EPP=11.6962;EPPR=68.1545;GTI=0;LEN=1;MEANALT=2;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=1.73472e-18;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=140;QR=1035;RO=30;RPL=4;RPP=11.6962;RPPR=68.1545;RPR=0;RUN=1;SAF=4;SAP=11.6962;SAR=0;SRF=30;SRP=68.1545;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|0:23:23,0:23:798:0:0:0,-6.92369,-72.14 0|0:1:1,0:1:35:0:0:0,-0.30103,-3.49863 0|1:11:6,4:6:202:4:140:-9.58477,0,-15.1525 dDocent_Contig_12674 5 . T C 74.6753 . AB=0;ABP=0;AC=2;AF=1;AN=2;AO=4;CIGAR=1X3I3M2X3M1X;DP=4;DPB=5.6;DPRA=0;EPP=11.6962;EPPR=0;GTI=0;LEN=1;MEANALT=1;MQM=21;MQMR=0;NS=1;NUMALT=1;ODDS=7.37776;PAIRED=0;PAIREDR=0;PAO=1;PQA=39;PQR=0;PRO=0;QA=145;QR=0;RO=0;RPL=0;RPP=11.6962;RPPR=0;RPR=4;RUN=1;SAF=4;SAP=11.6962;SAR=0;SRF=0;SRP=0;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL .:.:.:.:.:.:.:. .:.:.:.:.:.:.:. 1|1:4:0,4:0:0:4:145:-7.46726,-1.20412,0 dDocent_Contig_12675 65 . A G 89.8176 . AB=0.333333;ABP=5.9056;AC=1;AF=0.166667;AN=6;AO=4;CIGAR=1X;DP=26;DPB=26;DPRA=1.71429;EPP=11.6962;EPPR=50.7827;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=156;QR=851;RO=22;RPL=4;RPP=11.6962;RPPR=50.7827;RPR=0;RUN=1;SAF=4;SAP=11.6962;SAR=0;SRF=22;SRP=50.7827;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:13:13,0:13:513:0:0:0,-3.91339,-46.5151 0/0:1:1,0:1:40:0:0:0,-0.30103,-3.99568 0/1:12:8,4:8:298:4:156:-10.8049,0,-23.561 dDocent_Contig_12676 7 . A G 4371.22 . AB=0.32906;ABP=62.401;AC=3;AF=0.5;AN=6;AO=77;CIGAR=1X2M1X;DP=234;DPB=234;DPRA=0;EPP=170.214;EPPR=76.8404;GTI=0;LEN=1;MEANALT=3.66667;MQM=60;MQMR=60;NS=3;NUMALT=3;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=2559;QR=1310;RO=34;RPL=0;RPP=170.214;RPPR=76.8404;RPR=77;RUN=1;SAF=77;SAP=170.214;SAR=0;SRF=34;SRP=76.8404;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 1|0:117:17,6,25,69:17:660:6,25,69:184,862,2787:-240.437,-230.813,-283.239,-175.556,-215.046,-222.261,-15.75,-55.26,0,-49.2286 0|1:41:7,5,21,6:7:273:5,21,6:185,684,241:-53.0712,-40.0401,-60.9855,0,-7.31531,-16.1238,-35.3081,-42.6222,-2.57866,-55.9543 1|0:76:10,3,31,31:10:377:3,31,31:91,1013,1230:-149.136,-144.866,-174.86,-70.3775,-93.9925,-91.9377,-50.8675,-74.4928,0,-72.4414 dDocent_Contig_12677 16 . C T 1274.3 . AB=0.551282;ABP=4.79202;AC=3;AF=0.5;AN=6;AO=43;CIGAR=1X;DP=78;DPB=78;DPRA=0;EPP=96.3836;EPPR=79.0118;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=1726;QR=1414;RO=35;RPL=0;RPP=96.3836;RPPR=79.0118;RPR=43;RUN=1;SAF=43;SAP=96.3836;SAR=0;SRF=35;SRP=79.0118;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:40:26,14:26:1050:14:564:-39.0594,0,-82.7488 0/1:6:1,5:1:41:5:203:-16.8467,0,-2.28839 0/1:32:8,24:8:323:24:959:-76.9775,0,-19.8056 dDocent_Contig_12678 13 . G A 712.601 . AB=0.0967742;ABP=46.79;AC=0;AF=0;AN=6;AO=3;CIGAR=3X2M1X2M1X2M1X;DP=126;DPB=126;DPRA=0;EPP=9.52472;EPPR=152.842;GTI=0;LEN=1;MEANALT=5;MQM=52;MQMR=60;NS=3;NUMALT=6;ODDS=2.77556e-17;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=120;QR=2694;RO=69;RPL=0;RPP=9.52472;RPPR=152.842;RPR=3;RUN=1;SAF=3;SAP=9.52472;SAR=0;SRF=69;SRP=152.842;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|0:82:52,0,1,9,0,18,0:52:2035:0,1,9,0,18,0:0,40,339,0,720,0:-43.6812,-59.3348,-226.663,-56.0391,-223.368,-223.067,-31.5799,-198.907,-195.612,-196.198,-59.3348,-226.663,-223.368,-198.907,-226.663,0,-167.351,-164.056,-139.595,-167.351,-161.933,-59.3348,-226.663,-223.368,-198.907,-226.663,-167.351,-226.663 0|0:13:4,0,3,1,0,4,1:4:159:0,3,1,0,4,1:0,119,34,0,158,41:-11.8002,-13.0043,-26.0974,-3.20586,-16.3007,-15.3976,-10.2566,-23.3478,-13.5524,-23.0467,-13.0043,-26.0974,-16.3007,-23.3478,-26.0974,0,-13.0954,-3.29746,-10.3478,-13.0954,-11.8912,-9.61789,-22.7119,-12.9146,-19.9626,-22.7119,-9.70908,-22.4109 0|0:31:13,2,0,3,3,8,2:13:500:2,0,3,3,8,2:80,0,121,120,307,79:-21.3014,-24.4118,-64.8558,-25.2148,-65.4578,-66.2755,-15.2325,-55.4831,-56.2988,-55.3957,-15.3826,-55.6327,-56.4483,-46.4708,-55.5452,0,-40.2663,-41.0769,-31.0979,-31.2477,-38.6687,-18.7091,-58.9564,-59.7727,-49.7955,-49.9451,-34.5729,-59.1706 dDocent_Contig_12679 17 . G T 57.0877 . AB=0.153846;ABP=30.0702;AC=1;AF=0.166667;AN=6;AO=4;CIGAR=1X;DP=58;DPB=58;DPRA=1.625;EPP=11.6962;EPPR=120.27;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=59.8148;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=163;QR=2124;RO=54;RPL=0;RPP=11.6962;RPPR=120.27;RPR=4;RUN=1;SAF=4;SAP=11.6962;SAR=0;SRF=54;SRP=120.27;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:26:22,4:22:876:4:163:-7.23165,0,-71.3102 0/0:12:12,0:12:476:0:0:0,-3.61236,-43.1911 0/0:20:20,0:20:772:0:0:0,-6.0206,-69.7972 dDocent_Contig_12680 7 . A C 54.4152 . AB=0.16129;ABP=33.9012;AC=1;AF=0.166667;AN=6;AO=5;CIGAR=1X;DP=161;DPB=161;DPRA=0.476923;EPP=13.8677;EPPR=316.203;GTI=0;LEN=1;MEANALT=1;MQM=52;MQMR=54.0769;NS=3;NUMALT=1;ODDS=0;PAIRED=0;PAIREDR=0.615385;PAO=0;PQA=0;PQR=0;PRO=0;QA=181;QR=5961;RO=156;RPL=0;RPP=13.8677;RPPR=341.76;RPR=5;RUN=1;SAF=5;SAP=13.8677;SAR=0;SRF=153;SRP=316.203;SRR=3;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:93:93,0:93:3586:0:0:0,-27.9958,-315.127 0/1:31:26,5:26:975:5:181:-7.26543,0,-64.3442 0/0:37:37,0:37:1400:0:0:0,-11.1381,-110.528 dDocent_Contig_12681 8 . T A 36.0749 . AB=0.166667;ABP=20.3821;AC=1;AF=0.25;AN=4;AO=3;CIGAR=1X;DP=28;DPB=28;DPRA=1.8;EPP=9.52472;EPPR=57.2971;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=2;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=115;QR=965;RO=25;RPL=0;RPP=9.52472;RPPR=57.2971;RPR=3;RUN=1;SAF=3;SAP=9.52472;SAR=0;SRF=25;SRP=57.2971;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:18:15,3:15:584:3:115:-5.30635,0,-47.4847 ./.:.:.:.:.:.:.:. 0/0:10:10,0:10:381:0:0:0,-3.0103,-34.6446 dDocent_Contig_12682 21 . A G 152.636 . AB=0.160714;ABP=59.0033;AC=2;AF=0.333333;AN=6;AO=9;CIGAR=1M1D5M1X3M;DP=68;DPB=66.4545;DPRA=0;EPP=22.5536;EPPR=113.755;GTI=0;LEN=1;MEANALT=2;MQM=60;MQMR=60;NS=3;NUMALT=2;ODDS=6.93889e-18;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=355;QR=1997;RO=51;RPL=0;RPP=22.5536;RPPR=113.755;RPR=9;RUN=1;SAF=9;SAP=22.5536;SAR=0;SRF=51;SRP=113.755;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|1:45:35,6,4:35:1372:6,4:233,133:-8.64165,0,-111.069,-8.44783,-102.129,-120.069 0|0:12:10,0,2:10:389:0,2:0,79:-3.88488,-6.89518,-38.8563,0,-32.3547,-31.7527 0|1:11:6,3,2:6:236:3,2:122,81:-8.25805,0,-18.5011,-3.38573,-12.7221,-22.1877 dDocent_Contig_12684 9 . C T 102.808 . AB=0.162791;ABP=45.4803;AC=2;AF=0.333333;AN=6;AO=7;CIGAR=1X;DP=55;DPB=55;DPRA=1.79167;EPP=18.2106;EPPR=107.241;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=0.857143;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=273;QR=1855;RO=48;RPL=0;RPP=18.2106;RPPR=107.241;RPR=7;RUN=1;SAF=7;SAP=18.2106;SAR=0;SRF=48;SRP=107.241;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:32:26,6:26:1005:6:234:-11.7981,0,-81.1271 0/1:11:10,1:10:386:1:39:-0.585235,0,-31.7853 0/0:12:12,0:12:464:0:0:0,-3.61236,-42.1115 dDocent_Contig_12685 11 . G A 33.5683 . AB=0.148148;ABP=32.0437;AC=2;AF=0.333333;AN=6;AO=4;CIGAR=1X;DP=40;DPB=40;DPRA=1.03846;EPP=11.6962;EPPR=81.1833;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=158;QR=1431;RO=36;RPL=0;RPP=11.6962;RPPR=81.1833;RPR=4;RUN=1;SAF=4;SAP=11.6962;SAR=0;SRF=36;SRP=81.1833;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:14:12,2:12:486:2:78:-3.18888,0,-39.877 0/1:13:11,2:11:417:2:80:-3.6784,0,-33.9542 0/0:13:13,0:13:528:0:0:0,-3.91339,-47.8669 dDocent_Contig_12687 34 . C T 106.26 . AB=0.25;ABP=13.8677;AC=1;AF=0.166667;AN=6;AO=5;CIGAR=1X;DP=39;DPB=39;DPRA=2.10526;EPP=13.8677;EPPR=76.8404;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=201;QR=1353;RO=34;RPL=0;RPP=13.8677;RPPR=76.8404;RPR=5;RUN=1;SAF=5;SAP=13.8677;SAR=0;SRF=34;SRP=76.8404;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:13:13,0:13:519:0:0:0,-3.91339,-47.0571 0/0:6:6,0:6:241:0:0:0,-1.80618,-22.0667 0/1:20:15,5:15:593:5:201:-12.4499,0,-47.6867 dDocent_Contig_12688 152 . C T 66.4976 . AB=0.6;ABP=3.44459;AC=1;AF=0.166667;AN=6;AO=3;CIGAR=1X;DP=21;DPB=21;DPRA=0.625;EPP=9.52472;EPPR=42.0968;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=8.67362e-19;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=107;QR=694;RO=18;RPL=0;RPP=9.52472;RPPR=42.0968;RPR=3;RUN=1;SAF=0;SAP=9.52472;SAR=3;SRF=0;SRP=42.0968;SRR=18;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:8:8,0:8:321:0:0:0,-2.40824,-29.2574 0/1:5:2,3:2:80:3:107:-8.47364,0,-6.08664 0/0:8:8,0:8:293:0:0:0,-2.40824,-26.7111 dDocent_Contig_12689 14 . G A 40.6685 . AB=0.113636;ABP=60.0608;AC=1;AF=0.166667;AN=6;AO=5;CIGAR=1X;DP=109;DPB=109;DPRA=1.35385;EPP=13.8677;EPPR=228.843;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=0.971154;PAO=0;PQA=0;PQR=0;PRO=0;QA=205;QR=4041;RO=104;RPL=0;RPP=13.8677;RPPR=228.843;RPR=5;RUN=1;SAF=5;SAP=13.8677;SAR=0;SRF=104;SRP=228.843;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:44:39,5:39:1503:5:205:-5.58969,0,-122.276 0/0:29:29,0:29:1114:0:0:0,-8.72987,-100.545 0/0:36:36,0:36:1424:0:0:0,-10.8371,-128.413 dDocent_Contig_12690 21 . A G 33.7364 . AB=0.148148;ABP=32.0437;AC=2;AF=0.333333;AN=6;AO=7;CIGAR=1X2M1X;DP=74;DPB=74;DPRA=0;EPP=18.2106;EPPR=148.499;GTI=0;LEN=1;MEANALT=1;MQM=47.1429;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=0.571429;PAIREDR=0.955224;PAO=0;PQA=0;PQR=0;PRO=0;QA=274;QR=2671;RO=67;RPL=0;RPP=18.2106;RPPR=148.499;RPR=7;RUN=1;SAF=7;SAP=18.2106;SAR=0;SRF=67;SRP=148.499;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|0:47:44,3:44:1756:3:116:0,-5.92924,-150.044 0|1:4:3,1:3:119:1:41:-2.89045,0,-9.89127 0|1:23:20,3:20:796:3:117:-3.98622,0,-65.0309 dDocent_Contig_12691 7 . A G 55.6955 . 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T G 612.65 . AB=0.5;ABP=3.0103;AC=2;AF=0.5;AN=4;AO=26;CIGAR=2X;DP=52;DPB=52;DPRA=0;EPP=59.4686;EPPR=57.2971;GTI=0;LEN=1;MEANALT=1.5;MQM=60;MQMR=60;NS=2;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=889;QR=853;RO=25;RPL=26;RPP=59.4686;RPPR=57.2971;RPR=0;RUN=1;SAF=26;SAP=59.4686;SAR=0;SRF=0;SRP=57.2971;SRR=25;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|1:42:20,21:20:680:21:718:-52.2476,0,-48.8268 .:.:.:.:.:.:.:. 0|1:10:5,5:5:173:5:171:-12.7164,0,-12.8999 dDocent_Contig_12696 119 . C G 119.358 . 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AB=0.25;ABP=7.35324;AC=2;AF=0.333334;AN=6;AO=2;CIGAR=1X3M;DP=32;DPB=32;DPRA=0.615385;EPP=7.35324;EPPR=55.1256;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=2;ODDS=0;PAIRED=0;PAIREDR=0.916667;PAO=0;PQA=0;PQR=0;PRO=0;QA=70;QR=777;RO=24;RPL=0;RPP=7.35324;RPPR=55.1256;RPR=2;RUN=1;SAF=0;SAP=7.35324;SAR=2;SRF=0;SRP=55.1256;SRR=24;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|0:13:13,0,0:13:410:0,0:0,0:0,-3.91339,-37.2051,-3.91339,-37.2051,-37.2051 0|1:8:6,0,2:6:196:0,2:0,70:-4.23916,-6.04534,-21.8569,0,-16.1556,-15.5535 0|1:11:5,5,0:5:171:5,0:168,0:-12.1019,0,-12.3762,-13.607,-13.8813,-27.4891 dDocent_Contig_12698 98 . N A 95.1749 . AB=0;ABP=0;AC=2;AF=1;AN=2;AO=3;CIGAR=1X;DP=3;DPB=3;DPRA=0;EPP=9.52472;EPPR=0;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=0;NS=1;NUMALT=1;ODDS=6.68461;PAIRED=1;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=102;QR=0;RO=0;RPL=3;RPP=9.52472;RPPR=0;RPR=0;RUN=1;SAF=3;SAP=9.52472;SAR=0;SRF=0;SRP=0;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 1/1:3:0,3:0:0:3:102:-9.51695,-0.90309,0 ./.:.:.:.:.:.:.:. ./.:.:.:.:.:.:.:. dDocent_Contig_12699 32 . T A 919.737 . AB=0.254545;ABP=60.5741;AC=1;AF=0.166667;AN=6;AO=28;CIGAR=1X1M1X;DP=119;DPB=119;DPRA=6.11111;EPP=63.8115;EPPR=157.185;GTI=0;LEN=1;MEANALT=2;MQM=60;MQMR=60;NS=3;NUMALT=2;ODDS=1.38778e-17;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=1097;QR=2823;RO=71;RPL=0;RPP=63.8115;RPPR=157.185;RPR=28;RUN=1;SAF=28;SAP=63.8115;SAR=0;SRF=71;SRP=157.185;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|0:89:58,12,19:58:2306:12,19:468,758:-44.9693,-23.967,-210.205,0,-151.394,-184.138 0|0:9:9,0,0:9:354:0,0:0,0:0,-2.70927,-32.2212,-2.70927,-32.2212,-32.2212 0|1:21:4,16,1:4:163:16,1:629,40:-50.5272,0,-8.63678,-48.4359,-10.1597,-61.585 dDocent_Contig_12700 7 . A C 37.6836 . AB=0.25;ABP=9.52472;AC=2;AF=0.333333;AN=6;AO=3;CIGAR=1X;DP=19;DPB=19;DPRA=0.857143;EPP=9.52472;EPPR=37.7539;GTI=0;LEN=1;MEANALT=1;MQM=47.3333;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=115;QR=605;RO=16;RPL=0;RPP=9.52472;RPPR=37.7539;RPR=3;RUN=1;SAF=3;SAP=9.52472;SAR=0;SRF=16;SRP=37.7539;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:5:4,1:4:154:1:38:-2.27361,0,-12.7283 0/1:7:5,2:5:183:2:77:-4.94643,0,-14.7184 0/0:7:7,0:7:268:0:0:0,-2.10721,-24.4838 dDocent_Contig_12701 9 . C T 94.7763 . AB=0.227273;ABP=17.2236;AC=1;AF=0.166667;AN=6;AO=6;CIGAR=1X;DP=81;DPB=81;DPRA=0.594595;EPP=16.0391;EPPR=165.871;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=234;QR=2866;RO=75;RPL=0;RPP=16.0391;RPPR=165.871;RPR=6;RUN=1;SAF=6;SAP=16.0391;SAR=0;SRF=75;SRP=165.871;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:37:37,0:37:1426:0:0:0,-11.1381,-128.619 0/1:22:17,5:17:637:5:195:-11.3015,0,-51.0387 0/0:22:21,1:21:803:1:39:0,-2.7261,-68.6978 dDocent_Contig_12703 35 . G A 64.9218 . AB=0.125;ABP=71.4117;AC=2;AF=0.333333;AN=6;AO=9;CIGAR=1X;DP=99;DPB=99;DPRA=0;EPP=22.5536;EPPR=198.443;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=59.9;NS=3;NUMALT=1;ODDS=0;PAIRED=0.888889;PAIREDR=0.944444;PAO=0;PQA=0;PQR=0;PRO=0;QA=358;QR=3593;RO=90;RPL=0;RPP=22.5536;RPPR=198.443;RPR=9;RUN=1;SAF=9;SAP=22.5536;SAR=0;SRF=90;SRP=198.443;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:47:41,6:41:1615:6:242:-8.00803,0,-131.433 0/1:9:8,1:8:322:1:34:-0.689641,0,-26.6395 0/0:43:41,2:41:1656:2:82:0,-5.16461,-141.473 dDocent_Contig_12704 13 . T C 1206.35 . AB=0.304762;ABP=37.7745;AC=4;AF=0.666666;AN=6;AO=32;CIGAR=3M1X9M1X1M;DP=105;DPB=100.8;DPRA=0;EPP=72.4974;EPPR=33.4109;GTI=0;LEN=1;MEANALT=5.33333;MQM=60;MQMR=60;NS=3;NUMALT=7;ODDS=2.77556e-17;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=1218;QR=558;RO=14;RPL=0;RPP=72.4974;RPPR=33.4109;RPR=32;RUN=1;SAF=32;SAP=72.4974;SAR=0;SRF=14;SRP=33.4109;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 1|1:61:8,0,5,12,10,1,4,19:8:320:0,5,12,10,1,4,19:0,191,483,382,40,158,731:-71.0438,-73.4521,-99.8141,-57.7834,-84.1454,-82.6403,-33.6403,-60.0033,-44.3345,-56.3909,-42.1186,-68.4806,-52.8123,-28.6696,-65.4703,-70.1568,-96.5188,-80.8502,-56.708,-65.1854,-96.2178,-60.4504,-86.8125,-71.1439,-47.0014,-55.4791,-83.5173,-85.6084,-13.4493,-39.8114,-24.1436,0,-8.47988,-36.5162,-26.81,-34.0919 1|0:9:0,0,0,4,3,0,0,2:0:0:0,0,4,3,0,0,2:0,0,158,119,0,0,71:-22.8295,-22.8295,-22.8295,-22.8295,-22.8295,-22.8295,-9.82094,-9.82094,-9.82094,-8.61682,-13.0285,-13.0285,-13.0285,0,-12.1254,-22.8295,-22.8295,-22.8295,-9.82094,-13.0285,-22.8295,-22.8295,-22.8295,-22.8295,-9.82094,-13.0285,-22.8295,-22.8295,-17.055,-17.055,-17.055,-4.05399,-7.25821,-17.055,-17.055,-16.4529 0|1:35:6,3,4,1,5,5,0,11:6:238:3,4,1,5,5,0,11:105,159,41,203,188,0,416:-32.2843,-25.5535,-44.2443,-20.9971,-32.055,-39.388,-30.7054,-41.7626,-37.2072,-49.999,-17.3434,-28.4018,-23.8456,-33.554,-35.4339,-18.6945,-29.7523,-25.1962,-34.904,-21.5428,-36.7837,-34.0904,-45.1474,-40.5921,-50.3,-36.939,-38.2889,-53.6848,0,-11.0594,-6.50179,-16.2096,-2.84777,-4.20051,-19.5946,-16.2833 dDocent_Contig_12705 12 . T C 303.331 . AB=0.458333;ABP=3.37221;AC=2;AF=0.333333;AN=6;AO=11;CIGAR=1X;DP=30;DPB=30;DPRA=2;EPP=26.8965;EPPR=44.2683;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=448;QR=747;RO=19;RPL=0;RPP=26.8965;RPPR=44.2683;RPR=11;RUN=1;SAF=11;SAP=26.8965;SAR=0;SRF=19;SRP=44.2683;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:9:5,4:5:199:4:161:-12.1662,0,-15.5791 0/0:6:6,0:6:222:0:0:0,-1.80618,-20.3271 0/1:15:8,7:8:326:7:287:-21.6898,0,-25.1944 dDocent_Contig_12706 14 . C A 238.484 . AB=0.388889;ABP=4.9405;AC=4;AF=0.666667;AN=6;AO=9;CIGAR=1X;DP=20;DPB=20;DPRA=0;EPP=22.5536;EPPR=26.8965;GTI=0;LEN=1;MEANALT=1;MQM=57.6667;MQMR=60;NS=3;NUMALT=1;ODDS=1.73472e-18;PAIRED=0;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=352;QR=449;RO=11;RPL=0;RPP=22.5536;RPPR=26.8965;RPR=9;RUN=1;SAF=9;SAP=22.5536;SAR=0;SRF=11;SRP=26.8965;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:11:6,5:6:246:5:191:-14.2011,0,-19.2088 0/1:7:5,2:5:203:2:82:-5.67247,0,-16.5458 1/1:2:0,2:0:0:2:79:-7.49724,-0.60206,0 dDocent_Contig_12707 191 . A G 805.163 . AB=0.1;ABP=72.4974;AC=0;AF=0;AN=6;AO=5;CIGAR=2X3M1X;DP=51;DPB=51;DPRA=25;EPP=13.8677;EPPR=39.9253;GTI=0;LEN=1;MEANALT=2.5;MQM=60;MQMR=60;NS=3;NUMALT=2;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=179;QR=635;RO=17;RPL=5;RPP=13.8677;RPPR=39.9253;RPR=0;RUN=1;SAF=0;SAP=13.8677;SAR=5;SRF=0;SRP=39.9253;SRR=17;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|0:27:11,3,12:11:408:3,12:109,458:-34.274,-28.6885,-61.1648,0,-24.4882,-29.7744 0|0:1:0,0,1:0:0:0,1:0,39:-3.89656,-3.89656,-3.89656,-0.30103,-0.30103,0 0|0:23:6,2,15:6:227:2,15:70,580:-45.8671,-41.9821,-59.9863,0,-12.9414,-14.1143 dDocent_Contig_12708 10 . C A 83.5032 . AB=0.105263;ABP=157.299;AC=2;AF=0.333333;AN=6;AO=12;CIGAR=1X;DP=130;DPB=130;DPRA=3.5625;EPP=29.068;EPPR=259.244;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=483;QR=4751;RO=118;RPL=0;RPP=29.068;RPPR=259.244;RPR=12;RUN=1;SAF=12;SAP=29.068;SAR=0;SRF=118;SRP=259.244;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:65:57,8:57:2294:8:323:-9.87164,0,-187.046 0/1:49:45,4:45:1819:4:160:-0.0333336,0,-149.167 0/0:16:16,0:16:638:0:0:0,-4.81648,-57.7544 dDocent_Contig_12709 7 . A G 2718.85 . AB=0.514768;ABP=3.45925;AC=3;AF=0.5;AN=6;AO=122;CIGAR=1X;DP=237;DPB=237;DPRA=0;EPP=267.93;EPPR=246.215;GTI=0;LEN=1;MEANALT=1.66667;MQM=60;MQMR=59.0982;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=0.955357;PAO=0;PQA=0;PQR=0;PRO=0;QA=3861;QR=4254;RO=112;RPL=0;RPP=267.93;RPPR=246.215;RPR=122;RUN=1;SAF=122;SAP=267.93;SAR=0;SRF=112;SRP=246.215;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:87:64,23:64:2399:23:648:-32.3869,0,-189.345 0/1:87:15,70:15:581:70:2304:-181.819,0,-26.8576 0/1:63:33,29:33:1274:29:909:-63.2015,0,-95.9023 dDocent_Contig_12710 12 . T C 80.3562 . AB=0.266667;ABP=10.1038;AC=2;AF=0.333333;AN=6;AO=5;CIGAR=1X3M1X;DP=58;DPB=58;DPRA=0;EPP=13.8677;EPPR=118.098;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=198;QR=2099;RO=53;RPL=0;RPP=13.8677;RPPR=118.098;RPR=5;RUN=1;SAF=5;SAP=13.8677;SAR=0;SRF=53;SRP=118.098;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|0:43:42,1:42:1668:1:40:0,-8.94861,-146.355 0|1:4:1,3:1:36:3:118:-9.7986,0,-2.39415 0|1:11:10,1:10:395:1:40:-0.684349,0,-32.5961 dDocent_Contig_12711 8 . T C 229.072 . AB=0.124402;ABP=259.109;AC=3;AF=0.5;AN=6;AO=26;CIGAR=1X;DP=209;DPB=209;DPRA=0;EPP=51.1168;EPPR=400.39;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=59.9126;NS=3;NUMALT=1;ODDS=0;PAIRED=0.884615;PAIREDR=0.907104;PAO=0;PQA=0;PQR=0;PRO=0;QA=999;QR=7039;RO=183;RPL=0;RPP=59.4686;RPPR=400.39;RPR=26;RUN=1;SAF=25;SAP=51.1168;SAR=1;SRF=183;SRP=400.39;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:89:78,11:78:3004:11:427:-11.9933,0,-243.726 0/1:64:58,6:58:2219:6:229:-1.709,0,-180.67 0/1:56:47,9:47:1816:9:343:-14.3684,0,-146.764 dDocent_Contig_12712 22 . A G 79.0442 . AB=0.307692;ABP=7.18621;AC=2;AF=0.333333;AN=6;AO=6;CIGAR=1X;DP=38;DPB=38;DPRA=0;EPP=16.0391;EPPR=56.2114;GTI=0;LEN=1;MEANALT=1;MQM=55.8333;MQMR=57.8438;NS=3;NUMALT=1;ODDS=1.73472e-18;PAIRED=0;PAIREDR=0.9375;PAO=0;PQA=0;PQR=0;PRO=0;QA=208;QR=1241;RO=32;RPL=0;RPP=16.0391;RPPR=72.4974;RPR=6;RUN=1;SAF=0;SAP=16.0391;SAR=6;SRF=30;SRP=56.2114;SRR=2;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:25:23,2:23:884:2:70:0,-0.890229,-72.6637 0/1:9:8,1:8:322:1:33:-0.579961,0,-26.6389 0/1:4:1,3:1:35:3:105:-8.59105,0,-0.879058 dDocent_Contig_12713 18 . G A 909.709 . AB=0.533333;ABP=3.58936;AC=3;AF=0.5;AN=6;AO=32;CIGAR=1M1I1X;DP=60;DPB=76;DPRA=0;EPP=72.4974;EPPR=63.8115;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=1261;QR=1050;RO=28;RPL=0;RPP=72.4974;RPPR=63.8115;RPR=32;RUN=1;SAF=32;SAP=72.4974;SAR=0;SRF=28;SRP=63.8115;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|1:33:15,18:15:558:18:710:-54.2945,0,-40.6222 0|1:16:5,11:5:186:11:433:-34.5084,0,-12.2843 0|1:11:8,3:8:306:3:118:-7.69087,0,-24.5893 dDocent_Contig_12714 98 . N G 1211.22 . AB=0;ABP=0;AC=4;AF=1;AN=4;AO=45;CIGAR=1X;DP=45;DPB=45;DPRA=0;EPP=100.727;EPPR=0;GTI=0;LEN=1;MEANALT=1;MQM=58.5778;MQMR=0;NS=2;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=1338;QR=0;RO=0;RPL=45;RPP=100.727;RPPR=0;RPR=0;RUN=1;SAF=45;SAP=100.727;SAR=0;SRF=0;SRP=0;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 1/1:29:0,29:0:0:29:852:-76.9454,-8.72987,0 ./.:.:.:.:.:.:.:. 1/1:16:0,16:0:0:16:486:-43.8754,-4.81648,0 dDocent_Contig_12717 12 . C T 146.157 . AB=0.269231;ABP=15.0369;AC=2;AF=0.333333;AN=6;AO=8;CIGAR=1X;DP=68;DPB=68;DPRA=0;EPP=20.3821;EPPR=133.299;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=0.983333;PAO=0;PQA=0;PQR=0;PRO=0;QA=320;QR=2406;RO=60;RPL=0;RPP=20.3821;RPPR=133.299;RPR=8;RUN=1;SAF=8;SAP=20.3821;SAR=0;SRF=60;SRP=133.299;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:42:41,1:41:1661:1:40:0,-8.64758,-145.711 0/1:15:11,4:11:424:4:164:-10.6344,0,-33.9907 0/1:11:8,3:8:321:3:116:-7.50418,0,-25.9457 dDocent_Contig_12718 19 . A G 44.714 . AB=0.272727;ABP=7.94546;AC=1;AF=0.166667;AN=6;AO=3;CIGAR=1X;DP=35;DPB=35;DPRA=0.916667;EPP=9.52472;EPPR=72.4974;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=0;PAIREDR=0.59375;PAO=0;PQA=0;PQR=0;PRO=0;QA=103;QR=1253;RO=32;RPL=0;RPP=9.52472;RPPR=72.4974;RPR=3;RUN=1;SAF=3;SAP=9.52472;SAR=0;SRF=32;SRP=72.4974;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:15:15,0:15:577:0:0:0,-4.51545,-52.2575 0/1:11:8,3:8:318:3:103:-6.29529,0,-25.6741 0/0:9:9,0:9:358:0:0:0,-2.70927,-32.5828 dDocent_Contig_12719 49 . G T 108.164 . AB=0.222222;ABP=21.1059;AC=2;AF=0.333333;AN=6;AO=6;CIGAR=1X;DP=41;DPB=41;DPRA=0.964286;EPP=16.0391;EPPR=79.0118;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=241;QR=1381;RO=35;RPL=0;RPP=16.0391;RPPR=79.0118;RPR=6;RUN=1;SAF=6;SAP=16.0391;SAR=0;SRF=35;SRP=79.0118;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:21:18,3:18:710:3:122:-5.05086,0,-57.8988 0/0:14:14,0:14:550:0:0:0,-4.21442,-49.8414 0/1:6:3,3:3:121:3:119:-9.28832,0,-9.47381 dDocent_Contig_12720 25 . G A 37.149 . AB=0.148148;ABP=32.0437;AC=1;AF=0.166667;AN=6;AO=8;CIGAR=1X;DP=98;DPB=98;DPRA=0;EPP=20.3821;EPPR=196.271;GTI=0;LEN=1;MEANALT=1.33333;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=308;QR=3519;RO=89;RPL=0;RPP=20.3821;RPPR=196.271;RPR=8;RUN=1;SAF=8;SAP=20.3821;SAR=0;SRF=89;SRP=196.271;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:55:52,3:52:2055:3:119:0,-5.46164,-174.043 0/0:16:15,1:15:593:1:40:0,-0.820801,-49.7129 0/1:27:22,4:22:871:4:149:-5.5385,0,-70.463 dDocent_Contig_12721 61 . A T 120.946 . AB=0.186047;ABP=39.8243;AC=2;AF=0.333333;AN=6;AO=8;CIGAR=1X;DP=47;DPB=47;DPRA=5.375;EPP=20.3821;EPPR=87.6977;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=3.46945e-18;PAIRED=1;PAIREDR=0.974359;PAO=0;PQA=0;PQR=0;PRO=0;QA=309;QR=1470;RO=39;RPL=8;RPP=20.3821;RPPR=87.6977;RPR=0;RUN=1;SAF=8;SAP=20.3821;SAR=0;SRF=39;SRP=87.6977;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:34:28,6:28:1073:6:231:-10.9229,0,-86.6348 0/0:4:4,0:4:145:0:0:0,-1.20412,-13.4032 0/1:9:7,2:7:252:2:78:-4.6942,0,-20.3144 dDocent_Contig_12722 12 . A G 301.052 . AB=0.0810811;ABP=172.209;AC=0;AF=0;AN=6;AO=13;CIGAR=2X;DP=155;DPB=155;DPRA=0;EPP=31.2394;EPPR=267.93;GTI=0;LEN=1;MEANALT=2.33333;MQM=48;MQMR=57.1475;NS=3;NUMALT=2;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=482;QR=4803;RO=122;RPL=0;RPP=31.2394;RPPR=267.93;RPR=13;RUN=1;SAF=13;SAP=31.2394;SAR=0;SRF=122;SRP=267.93;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|0:51:32,7,11:32:1262:7,11:264,429:-25.6408,-13.936,-114.734,0,-81.5822,-99.6096 0|0:60:51,2,7:51:2016:2,7:80,283:-7.98689,-16.8587,-180.884,0,-158.153,-162.529 0|0:44:39,4,1:39:1525:4,1:138,34:0,-0.622052,-123.907,-8.98265,-122.354,-133.165 dDocent_Contig_12723 107 . N G 59.7311 . AB=0;ABP=0;AC=2;AF=1;AN=2;AO=3;CIGAR=1X;DP=3;DPB=3;DPRA=0;EPP=9.52472;EPPR=0;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=0;NS=1;NUMALT=1;ODDS=6.68461;PAIRED=1;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=64;QR=0;RO=0;RPL=0;RPP=9.52472;RPPR=0;RPR=3;RUN=1;SAF=0;SAP=9.52472;SAR=3;SRF=0;SRP=0;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 1/1:3:0,3:0:0:3:64:-5.97256,-0.90309,0 ./.:.:.:.:.:.:.:. ./.:.:.:.:.:.:.:. dDocent_Contig_12725 8 . T C 228.768 . AB=0.384615;ABP=7.52028;AC=1;AF=0.166667;AN=6;AO=16;CIGAR=1X1M1X2M1X1M1X;DP=60;DPB=60;DPRA=0;EPP=37.7539;EPPR=89.8692;GTI=0;LEN=1;MEANALT=1.66667;MQM=25.1875;MQMR=60;NS=3;NUMALT=2;ODDS=0;PAIRED=0;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=559;QR=1563;RO=40;RPL=0;RPP=37.7539;RPPR=89.8692;RPR=16;RUN=1;SAF=0;SAP=37.7539;SAR=16;SRF=40;SRP=89.8692;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|1:34:20,14,0:20:787:14,0:489,0:-21.0156,0,-60.9184,-27.0362,-65.1329,-91.8624 0|0:21:19,1,0:19:736:1,0:35,0:0,-3.64941,-64.0813,-5.71957,-64.3823,-66.3695 0|0:5:1,1,3:1:40:1,3:35,93:-5.33236,-3.63755,-6.67088,0,-1.44705,-2.46434 dDocent_Contig_12726 93 . T G 2546.73 . AB=0.795699;ABP=73.6415;AC=4;AF=0.666667;AN=6;AO=82;CIGAR=1X;DP=101;DPB=101;DPRA=0;EPP=181.071;EPPR=44.2683;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=0;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=3170;QR=673;RO=19;RPL=82;RPP=181.071;RPPR=44.2683;RPR=0;RUN=1;SAF=0;SAP=181.071;SAR=82;SRF=19;SRP=44.2683;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:67:10,57:10:368:57:2221:-179.935,0,-13.2995 1/1:8:0,8:0:0:8:290:-26.4405,-2.40824,0 0/1:26:9,17:9:305:17:659:-51.8198,0,-19.9498 dDocent_Contig_12727 119 . G T 213.779 . AB=0.117647;ABP=24.5973;AC=0;AF=0;AN=6;AO=2;CIGAR=1X3M1X3M;DP=66;DPB=66;DPRA=0;EPP=7.35324;EPPR=79.0118;GTI=0;LEN=1;MEANALT=3;MQM=25;MQMR=60;NS=3;NUMALT=5;ODDS=0;PAIRED=0;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=50;QR=1214;RO=35;RPL=0;RPP=7.35324;RPPR=79.0118;RPR=2;RUN=1;SAF=0;SAP=7.35324;SAR=2;SRF=0;SRP=79.0118;SRR=35;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|0:31:17,5,0,2,6,1:17:595:5,0,2,6,1:94,0,46,217,19:-12.3729,-11.9211,-58.8589,-17.4904,-60.364,-65.9556,-14.5005,-57.377,-62.9647,-62.3627,0,-42.9467,-48.5329,-45.5429,-46.7268,-16.3567,-59.2304,-64.8199,-61.8296,-47.3979,-64.5188 0|0:18:11,0,0,0,1,5:11:368:0,0,0,1,5:0,0,0,34,125:-5.09415,-8.40548,-38.2753,-8.40548,-38.2753,-38.2753,-8.40548,-38.2753,-38.2753,-38.2753,-5.66362,-35.5507,-35.5507,-35.5507,-35.2497,0,-29.9081,-29.9081,-29.9081,-27.1846,-28.403 0|0:17:7,0,2,0,4,4:7:251:0,2,0,4,4:0,50,0,143,97:-9.43362,-11.5408,-32.0489,-8.19603,-28.7031,-28.101,-11.5408,-32.0489,-28.7031,-32.0489,0,-20.5489,-17.2047,-20.5489,-19.3447,-5.13039,-25.629,-22.2927,-25.629,-14.1355,-24.4249 dDocent_Contig_12728 25 . G A 379.637 . AB=0.424242;ABP=4.65535;AC=2;AF=0.5;AN=4;AO=14;CIGAR=1X;DP=33;DPB=33;DPRA=0;EPP=33.4109;EPPR=44.2683;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=2;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=565;QR=754;RO=19;RPL=0;RPP=33.4109;RPPR=44.2683;RPR=14;RUN=1;SAF=14;SAP=33.4109;SAR=0;SRF=19;SRP=44.2683;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL ./.:.:.:.:.:.:.:. 0/1:11:6,5:6:230:5:203:-15.3417,0,-17.7512 0/1:22:13,9:13:524:9:362:-26.3209,0,-40.8841 dDocent_Contig_12729 107 . N T 551.516 . AB=0;ABP=0;AC=6;AF=1;AN=6;AO=43;CIGAR=1X;DP=43;DPB=43;DPRA=0;EPP=96.3836;EPPR=0;GTI=0;LEN=1;MEANALT=1;MQM=14.093;MQMR=0;NS=3;NUMALT=1;ODDS=0;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=1445;QR=0;RO=0;RPL=0;RPP=96.3836;RPPR=0;RPR=43;RUN=1;SAF=0;SAP=96.3836;SAR=43;SRF=0;SRP=0;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 1/1:25:0,25:0:0:25:833:-30.3454,-7.52575,0 1/1:6:0,6:0:0:6:204:-8.22024,-1.80618,0 1/1:12:0,12:0:0:12:408:-16.1088,-3.61236,0 dDocent_Contig_12731 12 . G A 326.141 . AB=0.40625;ABP=5.45321;AC=3;AF=0.5;AN=6;AO=13;CIGAR=1X;DP=32;DPB=32;DPRA=0;EPP=31.2394;EPPR=44.2683;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=518;QR=760;RO=19;RPL=0;RPP=31.2394;RPPR=44.2683;RPR=13;RUN=1;SAF=13;SAP=31.2394;SAR=0;SRF=19;SRP=44.2683;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:4:2,2:2:82:2:82:-6.57556,0,-6.57556 0/1:17:9,8:9:355:8:316:-23.6855,0,-27.1932 0/1:11:8,3:8:323:3:120:-7.87598,0,-26.1276 dDocent_Contig_12732 24 . T A 283.51 . AB=0.213333;ABP=56.5443;AC=2;AF=0.333333;AN=6;AO=16;CIGAR=1X;DP=103;DPB=103;DPRA=1.33929;EPP=29.6108;EPPR=121.842;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=0.875;PAIREDR=0.816092;PAO=0;PQA=0;PQR=0;PRO=0;QA=597;QR=3302;RO=87;RPL=0;RPP=37.7539;RPPR=191.928;RPR=16;RUN=1;SAF=15;SAP=29.6108;SAR=1;SRF=78;SRP=121.842;SRR=9;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:63:49,14:49:1902:14:517:-27.8932,0,-152.431 0/0:28:28,0:28:1018:0:0:0,-8.42884,-91.9093 0/1:12:10,2:10:382:2:80:-3.97922,0,-31.119 dDocent_Contig_12733 128 . G T 445.378 . AB=0.242105;ABP=57.8914;AC=1;AF=0.166667;AN=6;AO=23;CIGAR=1X;DP=113;DPB=113;DPRA=10.5556;EPP=52.9542;EPPR=198.443;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=826;QR=3194;RO=90;RPL=0;RPP=52.9542;RPPR=198.443;RPR=23;RUN=1;SAF=0;SAP=52.9542;SAR=23;SRF=0;SRP=198.443;SRR=90;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:95:72,23:72:2561:23:826:-46.0607,0,-202.141 0/0:5:5,0:5:174:0:0:0,-1.50515,-16.0014 0/0:13:13,0:13:459:0:0:0,-3.91339,-41.6446 dDocent_Contig_12734 145 . T C 135.173 . AB=0.4;ABP=3.87889;AC=3;AF=0.5;AN=6;AO=5;CIGAR=1X;DP=19;DPB=19;DPRA=0.6875;EPP=13.8677;EPPR=33.4109;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=192;QR=571;RO=14;RPL=0;RPP=13.8677;RPPR=33.4109;RPR=5;RUN=1;SAF=0;SAP=13.8677;SAR=5;SRF=0;SRP=33.4109;SRR=14;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:10:6,4:6:244:4:151:-10.9449,0,-19.3285 1/1:1:0,1:0:0:1:41:-4.09457,-0.30103,0 0/0:8:8,0:8:327:0:0:0,-2.40824,-29.8001 dDocent_Contig_12736 9 . C A 5998.05 . AB=0.0987654;ABP=1248.93;AC=4;AF=0.666667;AN=6;AO=88;CIGAR=1X4M1X4M;DP=891;DPB=891;DPRA=0;EPP=194.1;EPPR=107.241;GTI=0;LEN=1;MEANALT=29.3333;MQM=55.4091;MQMR=59.7292;NS=3;NUMALT=7;ODDS=0;PAIRED=0.943182;PAIREDR=0.708333;PAO=0;PQA=0;PQR=0;PRO=0;QA=3259;QR=1892;RO=48;RPL=0;RPP=194.1;RPPR=107.241;RPR=88;RUN=1;SAF=88;SAP=194.1;SAR=0;SRF=48;SRP=107.241;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 1|0:429:30,33,25,76,28,24,28,44:30:1183:33,25,76,28,24,28,44:1291,984,2934,1107,867,1115,1720:-268.634,-171.533,-258.878,-196.716,-187.863,-286.469,-39.2273,-30.3745,-55.5577,-113.628,-186.659,-177.806,-202.99,-45.5008,-275.509,-207.272,-198.42,-223.603,-66.1145,-213.546,-297.327,-185.852,-176.999,-202.182,-44.6931,-192.125,-212.738,-274.702,-141.158,-132.305,-157.489,0,-147.432,-168.045,-146.624,-225.192 1|0:181:6,20,11,28,14,22,1,23:6:238:20,11,28,14,22,1,23:773,423,1100,546,841,40,897:-140.192,-78.5098,-92.0817,-107.275,-63.379,-123.556,-51.7203,-7.82439,-36.5895,-62.8841,-97.4267,-53.5309,-82.2959,-26.7414,-112.805,-73.7042,-29.8085,-58.5734,-3.01891,-48.7254,-86.674,-138.703,-94.8071,-123.572,-68.0177,-113.724,-90.0015,-157.994,-70.6853,-26.7896,-55.5545,0,-45.7065,-21.9841,-86.9826,-83.3541 1|1:281:12,35,6,33,19,42,11,21:12:471:35,6,33,19,42,11,21:1373,238,1297,616,1551,433,814:-196.502,-87.574,-115.775,-180.522,-106.719,-217.453,-94.2864,-20.483,-113.431,-123.09,-151.411,-77.6079,-170.555,-84.3203,-184.428,-73.803,0,-92.9477,-6.71242,-63.8373,-99.8968,-164.495,-90.6917,-183.64,-97.4042,-154.528,-76.9208,-199.921,-135.103,-61.2996,-154.247,-68.012,-125.136,-47.5288,-138.22,-167.518 dDocent_Contig_12739 12 . C A 281.778 . AB=0.230769;ABP=19.3799;AC=1;AF=0.166667;AN=6;AO=6;CIGAR=2M1X2M1X2M1X;DP=88;DPB=88;DPRA=0;EPP=3.0103;EPPR=55.9529;GTI=0;LEN=1;MEANALT=4;MQM=47.1667;MQMR=60;NS=3;NUMALT=7;ODDS=0;PAIRED=0;PAIREDR=0.666667;PAO=0;PQA=0;PQR=0;PRO=0;QA=224;QR=1607;RO=42;RPL=0;RPP=16.0391;RPPR=94.2121;RPR=6;RUN=1;SAF=3;SAP=3.0103;SAR=3;SRF=37;SRP=55.9529;SRR=5;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|0:29:21,2,0,0,0,0,3,2:21:805:2,0,0,0,0,3,2:73,0,0,0,0,81,71:-0.0355455,-0.387169,-65.9204,-6.35718,-66.5224,-72.4752,-6.35718,-66.5224,-72.4752,-72.4752,-6.35718,-66.5224,-72.4752,-72.4752,-72.4752,-6.35718,-66.5224,-72.4752,-72.4752,-72.4752,-72.4752,0,-60.1516,-66.1034,-66.1034,-66.1034,-66.1034,-65.2003,-0.557952,-60.7381,-66.6908,-66.6908,-66.6908,-66.6908,-60.32,-66.0888 0|0:33:9,0,2,9,4,0,7,0:9:344:0,2,9,4,0,7,0:0,69,204,134,0,246,0:-17.3388,-20.0481,-48.2991,-14.4383,-42.6926,-42.0905,-6.71437,-34.9557,-29.3521,-32.2464,-9.1868,-37.4445,-31.8374,-24.1081,-36.2404,-20.0481,-48.2991,-42.6926,-34.9557,-37.4445,-48.2991,0,-28.2674,-22.6594,-14.9358,-17.4098,-28.2674,-26.1602,-20.0481,-48.2991,-42.6926,-34.9557,-37.4445,-48.2991,-28.2674,-48.2991 0|1:26:12,0,0,0,0,6,6,0:12:458:0,0,0,0,6,6,0:0,0,0,0,224,158,0:-14.3592,-17.9715,-55.5777,-17.9715,-55.5777,-55.5777,-17.9715,-55.5777,-55.5777,-55.5777,-17.9715,-55.5777,-55.5777,-55.5777,-55.5777,0,-37.6412,-37.6412,-37.6412,-37.6412,-35.835,-6.47309,-44.0611,-44.0611,-44.0611,-44.0611,-26.1339,-42.2549,-17.9715,-55.5777,-55.5777,-55.5777,-55.5777,-37.6412,-44.0611,-55.5777 dDocent_Contig_12740 17 . G C 79.8021 . AB=0.166667;ABP=31.9633;AC=1;AF=0.166667;AN=6;AO=5;CIGAR=1X;DP=46;DPB=46;DPRA=3.75;EPP=13.8677;EPPR=92.0407;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=59.7805;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=0.97561;PAO=0;PQA=0;PQR=0;PRO=0;QA=205;QR=1599;RO=41;RPL=0;RPP=13.8677;RPPR=92.0407;RPR=5;RUN=1;SAF=5;SAP=13.8677;SAR=0;SRF=41;SRP=92.0407;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:8:8,0:8:308:0:0:0,-2.40824,-28.0751 0/1:30:25,5:25:979:5:205:-9.80411,0,-79.3501 0/0:8:8,0:8:312:0:0:0,-2.40824,-28.4371 dDocent_Contig_12741 34 . C T 93.6414 . AB=0.0714286;ABP=70.0157;AC=1;AF=0.166667;AN=6;AO=8;CIGAR=2M1X2M;DP=111;DPB=109.6;DPRA=0;EPP=20.3821;EPPR=202.786;GTI=0;LEN=1;MEANALT=3;MQM=60;MQMR=60;NS=3;NUMALT=2;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=318;QR=3566;RO=92;RPL=0;RPP=20.3821;RPPR=202.786;RPR=8;RUN=1;SAF=8;SAP=20.3821;SAR=0;SRF=92;SRP=202.786;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|0:69:60,2,5:60:2347:2,5:58,198:0,-13.4638,-205.846,-1.71425,-190.152,-193.26 0|1:14:12,0,2:12:462:0,2:0,79:-3.28282,-6.89518,-44.8191,0,-38.317,-37.715 0|0:28:20,5,1:20:757:5,1:190,41:-9.59668,0,-60.6004,-12.2257,-58.7197,-74.0005 dDocent_Contig_12744 50 . C A 461.559 . AB=0.298507;ABP=26.6372;AC=3;AF=0.5;AN=6;AO=20;CIGAR=1X1M1X;DP=67;DPB=67;DPRA=0;EPP=46.4397;EPPR=105.07;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=786;QR=1845;RO=47;RPL=20;RPP=46.4397;RPPR=105.07;RPR=0;RUN=1;SAF=20;SAP=46.4397;SAR=0;SRF=47;SRP=105.07;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|1:45:34,11:34:1341:11:427:-25.2357,0,-107.415 0|1:6:4,2:4:160:2:78:-5.59712,0,-12.9778 0|1:16:9,7:9:344:7:281:-20.8459,0,-26.4958 dDocent_Contig_12745 38 . G A 67.2983 . AB=0.190476;ABP=20.4855;AC=1;AF=0.166667;AN=6;AO=4;CIGAR=1X;DP=81;DPB=81;DPRA=0.7;EPP=11.6962;EPPR=170.214;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=161;QR=2994;RO=77;RPL=0;RPP=11.6962;RPPR=170.214;RPR=4;RUN=1;SAF=4;SAP=11.6962;SAR=0;SRF=77;SRP=170.214;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:56:56,0:56:2186:0:0:0,-16.8577,-196.921 0/0:4:4,0:4:160:0:0:0,-1.20412,-14.7836 0/1:21:17,4:17:648:4:161:-8.55364,0,-52.3207 dDocent_Contig_12747 19 . C A 60.0285 . AB=0.333333;ABP=5.18177;AC=1;AF=0.166667;AN=6;AO=5;CIGAR=1X;DP=55;DPB=55;DPRA=1.61538;EPP=13.8677;EPPR=111.584;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=58.68;NS=3;NUMALT=1;ODDS=0;PAIRED=0;PAIREDR=0.76;PAO=0;PQA=0;PQR=0;PRO=0;QA=195;QR=1974;RO=50;RPL=0;RPP=13.8677;RPPR=111.584;RPR=5;RUN=1;SAF=5;SAP=13.8677;SAR=0;SRF=50;SRP=111.584;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:33:31,2:31:1242:2:82:0,-2.15431,-104.272 0/1:9:6,3:6:240:3:113:-7.82675,0,-19.2664 0/0:13:13,0:13:492:0:0:0,-3.91339,-42.2171 dDocent_Contig_12748 154 . T C 107.646 . AB=0.333333;ABP=6.62942;AC=2;AF=0.333333;AN=6;AO=5;CIGAR=1X;DP=30;DPB=30;DPRA=0.5;EPP=13.8677;EPPR=57.2971;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=202;QR=999;RO=25;RPL=0;RPP=13.8677;RPPR=57.2971;RPR=5;RUN=1;SAF=0;SAP=13.8677;SAR=5;SRF=0;SRP=57.2971;SRR=25;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:15:15,0:15:592:0:0:0,-4.51545,-53.6194 0/1:7:6,1:6:246:1:41:-1.98736,0,-20.4129 0/1:8:4,4:4:161:4:161:-12.4667,0,-12.467 dDocent_Contig_12749 15 . A G 3428.04 . AB=0.0780142;ABP=221.097;AC=0;AF=0;AN=6;AO=11;CIGAR=1M5D3M1X2M;DP=188;DPB=119.667;DPRA=0;EPP=26.8965;EPPR=55.1256;GTI=0;LEN=1;MEANALT=4.5;MQM=60;MQMR=60;NS=3;NUMALT=4;ODDS=0;PAIRED=0.818182;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=419;QR=948;RO=24;RPL=0;RPP=26.8965;RPPR=55.1256;RPR=11;RUN=1;SAF=11;SAP=26.8965;SAR=0;SRF=24;SRP=55.1256;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|0:119:11,0,10,12,80:11:435:0,10,12,80:0,380,442,2893:-233.162,-236.473,-272.276,-205.308,-241.111,-238.1,-200.328,-236.131,-204.965,-232.518,-0.334087,-36.1403,-4.97571,0,-12.0579 0|0:22:7,0,1,1,12:7:278:0,1,1,12:0,39,35,424:-32.4048,-34.512,-57.4116,-31.3039,-54.2048,-53.9037,-31.6649,-54.5648,-51.358,-54.2638,0,-22.9014,-19.6956,-20.0582,-19.289 0|0:47:6,4,0,8,28:6:235:4,0,8,28:148,0,286,989:-82.6981,-72.3953,-90.5195,-84.5042,-91.7236,-103.832,-61.186,-68.4063,-80.5147,-78.1064,-3.97534,-11.2007,-23.3077,0,-14.8789 dDocent_Contig_12750 9 . C A 251.27 . AB=0.2;ABP=61.6401;AC=3;AF=0.5;AN=6;AO=15;CIGAR=2X;DP=75;DPB=75;DPRA=0;EPP=35.5824;EPPR=133.299;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=579;QR=2338;RO=60;RPL=0;RPP=35.5824;RPPR=133.299;RPR=15;RUN=1;SAF=15;SAP=35.5824;SAR=0;SRF=60;SRP=133.299;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|1:44:39,5:39:1527:5:198:-4.95243,0,-124.446 0|1:16:13,3:13:512:3:119:-6.27891,0,-41.6123 0|1:15:8,7:8:299:7:262:-19.4184,0,-22.7475 dDocent_Contig_12752 9 . C T 52.7681 . AB=0.166667;ABP=26.1727;AC=1;AF=0.166667;AN=6;AO=10;CIGAR=1X;DP=129;DPB=129;DPRA=0;EPP=24.725;EPPR=261.416;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=35.0252;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=0.478992;PAO=0;PQA=0;PQR=0;PRO=0;QA=384;QR=4653;RO=119;RPL=0;RPP=24.725;RPPR=261.416;RPR=10;RUN=1;SAF=10;SAP=24.725;SAR=0;SRF=119;SRP=261.416;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:79:74,5:74:2919:5:190:0,-6.3142,-131.473 0/1:24:20,4:20:776:4:155:-7.10072,0,-52.2783 0/0:26:25,1:25:958:1:39:0,-3.93022,-51.2394 dDocent_Contig_12753 9 . C T 621.011 . AB=0.470588;ABP=3.3935;AC=3;AF=0.5;AN=6;AO=24;CIGAR=1X;DP=51;DPB=51;DPRA=0;EPP=55.1256;EPPR=61.6401;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=3.46945e-18;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=910;QR=1035;RO=27;RPL=0;RPP=55.1256;RPPR=61.6401;RPR=24;RUN=1;SAF=24;SAP=55.1256;SAR=0;SRF=27;SRP=61.6401;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:20:9,11:9:350:11:409:-31.1322,0,-25.8408 0/1:12:6,6:6:221:6:232:-17.6366,0,-16.6331 0/1:19:12,7:12:464:7:269:-18.8552,0,-36.3921 dDocent_Contig_12754 156 . G A 242.9 . AB=0.5;ABP=3.0103;AC=1;AF=0.25;AN=4;AO=10;CIGAR=1X;DP=26;DPB=26;DPRA=3.33333;EPP=24.725;EPPR=37.7539;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=2;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=352;QR=625;RO=16;RPL=0;RPP=24.725;RPPR=37.7539;RPR=10;RUN=1;SAF=0;SAP=24.725;SAR=10;SRF=0;SRP=37.7539;SRR=16;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:20:10,10:10:391:10:352:-25.989,0,-29.5261 ./.:.:.:.:.:.:.:. 0/0:6:6,0:6:234:0:0:0,-1.80618,-21.4304 dDocent_Contig_12755 59 . T C 103.16 . AB=0.4;ABP=3.87889;AC=1;AF=0.166667;AN=6;AO=8;CIGAR=1X;DP=123;DPB=123;DPRA=0;EPP=20.3821;EPPR=252.73;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=3.46945e-18;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=323;QR=4541;RO=115;RPL=8;RPP=20.3821;RPPR=252.73;RPR=0;RUN=1;SAF=8;SAP=20.3821;SAR=0;SRF=115;SRP=252.73;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:74:73,1:73:2866:1:41:0,-18.1817,-253.963 0/1:10:6,4:6:238:4:164:-12.1396,0,-18.7836 0/0:39:36,3:36:1437:3:118:0,-0.737966,-118.583 dDocent_Contig_12756 20 . A C 1700.93 . AB=0.565657;ABP=6.71716;AC=3;AF=0.5;AN=6;AO=56;CIGAR=1M1X3M;DP=99;DPB=98.4;DPRA=0;EPP=124.613;EPPR=83.3548;GTI=0;LEN=1;MEANALT=1.66667;MQM=60;MQMR=60;NS=3;NUMALT=3;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=2259;QR=1460;RO=37;RPL=0;RPP=124.613;RPPR=83.3548;RPR=56;RUN=1;SAF=56;SAP=124.613;SAR=0;SRF=37;SRP=83.3548;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|1:58:15,3,40,0:15:599:3,40,0:116,1607,0:-127.916,-122.905,-171.337,0,-39.8204,-37.3052,-132.432,-172.24,-49.3464,-181.767 0|1:18:12,0,3,3:12:475:0,3,3:0,121,121:-6.36189,-9.97425,-49.061,0,-39.0857,-38.1826,-0.000211551,-39.0859,-29.1102,-38.1828 0|1:23:10,0,13,0:10:386:0,13,0:0,531,0:-41.2127,-44.223,-75.9092,0,-32.0815,-28.1682,-44.223,-75.9092,-32.0815,-75.9092 dDocent_Contig_12758 38 . C T 210.997 . AB=0.166667;ABP=84.0786;AC=3;AF=0.5;AN=6;AO=14;CIGAR=1X;DP=84;DPB=84;DPRA=0;EPP=33.4109;EPPR=155.013;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=59.6286;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=0.985714;PAO=0;PQA=0;PQR=0;PRO=0;QA=564;QR=2752;RO=70;RPL=0;RPP=33.4109;RPPR=155.013;RPR=14;RUN=1;SAF=14;SAP=33.4109;SAR=0;SRF=70;SRP=155.013;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:30:24,6:24:960:6:240:-12.9442,0,-76.9699 0/1:32:28,4:28:1094:4:162:-5.334,0,-89.1127 0/1:22:18,4:18:698:4:162:-8.3443,0,-56.5084 dDocent_Contig_12759 11 . G A 904.333 . AB=0.584906;ABP=6.32897;AC=2;AF=0.333333;AN=6;AO=31;CIGAR=1X;DP=61;DPB=61;DPRA=3.3125;EPP=70.3259;EPPR=68.1545;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=1214;QR=1184;RO=30;RPL=0;RPP=70.3259;RPPR=68.1545;RPR=31;RUN=1;SAF=31;SAP=70.3259;SAR=0;SRF=30;SRP=68.1545;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:33:13,20:13:517:20:798:-62.2017,0,-36.9405 0/0:8:8,0:8:310:0:0:0,-2.40824,-28.2613 0/1:20:9,11:9:357:11:416:-31.7545,0,-26.4687 dDocent_Contig_12760 93 . T A 2410.72 . AB=0.723684;ABP=36.0395;AC=4;AF=0.666667;AN=6;AO=89;CIGAR=1X;DP=111;DPB=111;DPRA=0;EPP=196.271;EPPR=50.7827;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=3001;QR=757;RO=22;RPL=89;RPP=196.271;RPPR=50.7827;RPR=0;RUN=1;SAF=89;SAP=196.271;SAR=0;SRF=22;SRP=50.7827;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:67:15,52:15:514:52:1756:-138.154,0,-26.4171 0/1:9:6,3:6:208:3:89:-5.59585,0,-16.3504 1/1:35:1,34:1:35:34:1156:-100.844,-7.03742,0 dDocent_Contig_12761 175 . G C 98.5879 . AB=0.181818;ABP=32.0291;AC=2;AF=0.333333;AN=6;AO=7;CIGAR=1X;DP=36;DPB=36;DPRA=0;EPP=18.2106;EPPR=65.983;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=3.46945e-18;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=249;QR=1176;RO=29;RPL=7;RPP=18.2106;RPPR=65.983;RPR=0;RUN=1;SAF=0;SAP=18.2106;SAR=7;SRF=0;SRP=65.983;SRR=29;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:23:18,5:18:732:5:199:-11.3631,0,-59.2799 0/0:3:2,1:2:76:1:9:0,-0.00309299,-6.31426 0/1:10:9,1:9:368:1:41:-1.08427,0,-30.4751 dDocent_Contig_12762 90 . T C 100.067 . AB=0.125;ABP=22.5536;AC=0;AF=0;AN=6;AO=2;CIGAR=2X;DP=33;DPB=33;DPRA=1.88235;EPP=7.35324;EPPR=59.4686;GTI=0;LEN=1;MEANALT=2;MQM=60;MQMR=60;NS=3;NUMALT=2;ODDS=0;PAIRED=1;PAIREDR=0.961538;PAO=0;PQA=0;PQR=0;PRO=0;QA=70;QR=902;RO=26;RPL=2;RPP=7.35324;RPPR=59.4686;RPR=0;RUN=1;SAF=2;SAP=7.35324;SAR=0;SRF=26;SRP=59.4686;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|0:16:9,2,5:9:314:2,5:70,175:-11.5294,-8.54321,-33.4803,0,-19.8433,-24.0338 0|0:4:4,0,0:4:137:0,0:0,0:0,-1.20412,-12.6682,-1.20412,-12.6682,-12.6682 0|0:13:13,0,0:13:451:0,0:0,0:0,-3.91339,-40.9216,-3.91339,-40.9216,-40.9216 dDocent_Contig_12763 107 . N A 220.264 . AB=0;ABP=0;AC=2;AF=1;AN=2;AO=7;CIGAR=1X;DP=7;DPB=7;DPRA=0;EPP=18.2106;EPPR=0;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=0;NS=1;NUMALT=1;ODDS=9.4572;PAIRED=1;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=241;QR=0;RO=0;RPL=0;RPP=18.2106;RPPR=0;RPR=7;RUN=1;SAF=0;SAP=18.2106;SAR=7;SRF=0;SRP=0;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 1/1:7:0,7:0:0:7:241:-22.0264,-2.10721,0 ./.:.:.:.:.:.:.:. ./.:.:.:.:.:.:.:. dDocent_Contig_12764 9 . C G 434.251 . AB=0.205882;ABP=28.557;AC=0;AF=0;AN=6;AO=7;CIGAR=2X3M1D6M1X;DP=82;DPB=77.8462;DPRA=0;EPP=18.2106;EPPR=61.6401;GTI=0;LEN=1;MEANALT=5;MQM=60;MQMR=60;NS=3;NUMALT=8;ODDS=2.77556e-17;PAIRED=0;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=256;QR=1059;RO=27;RPL=0;RPP=18.2106;RPPR=61.6401;RPR=7;RUN=1;SAF=7;SAP=18.2106;SAR=0;SRF=27;SRP=61.6401;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|0:34:13,2,7,0,4,0,0,7,0:13:518:2,7,0,4,0,0,7,0:79,257,0,155,0,0,256,0:-17.0893,-14.4996,-56.5656,0,-36.1657,-40.56,-21.0027,-57.1677,-42.6672,-63.6693,-8.26776,-44.4351,-29.9354,-50.9369,-49.7328,-21.0027,-57.1677,-42.6672,-63.6693,-50.9369,-63.6693,-21.0027,-57.1677,-42.6672,-63.6693,-50.9369,-63.6693,-63.6693,-0.0897187,-36.2551,-21.7575,-42.7566,-30.0248,-42.7566,-42.7566,-40.6493,-21.0027,-57.1677,-42.6672,-63.6693,-50.9369,-63.6693,-63.6693,-42.7566,-63.6693 0|0:16:5,0,5,0,4,1,1,0,0:5:193:0,5,0,4,1,1,0,0:0,188,0,150,39,39,0,0:-13.8961,-15.4012,-31.254,0,-15.8531,-14.3479,-15.4012,-31.254,-15.8531,-31.254,-3.11684,-18.9697,-3.57128,-18.9697,-17.7656,-12.1942,-28.0475,-12.6465,-28.0475,-15.7631,-27.7465,-12.1942,-28.0475,-12.6465,-28.0475,-15.7631,-24.8409,-27.7465,-15.4012,-31.254,-15.8531,-31.254,-18.9697,-28.0475,-28.0475,-31.254,-15.4012,-31.254,-15.8531,-31.254,-18.9697,-28.0475,-28.0475,-31.254,-31.254 0|0:32:9,0,1,2,8,6,4,0,2:9:348:0,1,2,8,6,4,0,2:0,39,70,256,207,152,0,78:-17.8583,-20.5676,-49.161,-17.3599,-45.9541,-45.6531,-14.8731,-43.4672,-40.2603,-42.8652,0,-28.5911,-25.3845,-22.8988,-26.1829,-3.75384,-32.3492,-29.1423,-26.6559,-11.7853,-30.5431,-8.09532,-36.6923,-33.4852,-30.9984,-16.1239,-19.8804,-35.4882,-20.5676,-49.161,-45.9541,-43.4672,-28.5911,-32.3492,-36.6923,-49.161,-14.1519,-42.7472,-39.5402,-37.0533,-22.1778,-25.9352,-30.278,-42.7472,-42.1451 dDocent_Contig_12765 190 . G A 137.832 . AB=0.210526;ABP=30.668;AC=3;AF=0.5;AN=6;AO=8;CIGAR=1X;DP=38;DPB=38;DPRA=0;EPP=20.3821;EPPR=68.1545;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=328;QR=1191;RO=30;RPL=8;RPP=20.3821;RPPR=68.1545;RPR=0;RUN=1;SAF=0;SAP=20.3821;SAR=8;SRF=0;SRP=68.1545;SRR=30;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:23:18,5:18:720:5:205:-11.9113,0,-58.2029 0/1:10:8,2:8:311:2:82:-4.76938,0,-25.3399 0/1:5:4,1:4:160:1:41:-2.58942,0,-13.2783 dDocent_Contig_12766 10 . A G 794.399 . AB=0.538462;ABP=3.67845;AC=3;AF=0.5;AN=6;AO=28;CIGAR=1X2M;DP=52;DPB=52;DPRA=0;EPP=63.8115;EPPR=48.6112;GTI=0;LEN=1;MEANALT=1.66667;MQM=60;MQMR=60;NS=3;NUMALT=2;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=1101;QR=836;RO=21;RPL=0;RPP=63.8115;RPPR=48.6112;RPR=28;RUN=1;SAF=28;SAP=63.8115;SAR=0;SRF=21;SRP=48.6112;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|1:25:9,1,15:9:360:1,15:40,585:-45.5517,-46.7778,-76.1354,0,-28.3598,-25.3195 0|1:8:5,0,3:5:201:0,3:0,114:-8.22185,-9.727,-26.3045,0,-16.9654,-16.0623 0|1:19:7,2,10:7:275:2,10:76,402:-31.1891,-30.3446,-52.3559,0,-19.8248,-19.757 dDocent_Contig_12768 40 . G A 1061.6 . AB=0.666667;ABP=16.0391;AC=3;AF=0.5;AN=6;AO=36;CIGAR=1X;DP=54;DPB=54;DPRA=0;EPP=81.1833;EPPR=39.9253;GTI=0;LEN=1;MEANALT=1.33333;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=1411;QR=667;RO=17;RPL=0;RPP=81.1833;RPPR=39.9253;RPR=36;RUN=1;SAF=36;SAP=81.1833;SAR=0;SRF=17;SRP=39.9253;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:31:5,25:5:198:25:977:-78.8008,0,-8.7672 0/1:12:7,5:7:277:5:194:-14.2171,0,-21.6874 0/1:11:5,6:5:192:6:240:-18.6647,0,-14.337 dDocent_Contig_12769 10 . A T 64.7061 . AB=0.2;ABP=22.5536;AC=1;AF=0.166667;AN=6;AO=7;CIGAR=1X2M1X2M1X;DP=53;DPB=53;DPRA=8.33333;EPP=18.2106;EPPR=102.898;GTI=0;LEN=1;MEANALT=1;MQM=35;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=0;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=279;QR=1791;RO=46;RPL=0;RPP=18.2106;RPPR=102.898;RPR=7;RUN=1;SAF=7;SAP=18.2106;SAR=0;SRF=46;SRP=102.898;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|1:25:20,5:20:786:5:199:-7.9932,0,-63.5384 0|0:3:3,0:3:117:0:0:0,-0.90309,-10.9102 0|0:25:23,2:23:888:2:80:0,-1.10242,-73.814 dDocent_Contig_12770 12 . T C 1335.8 . AB=0.340659;ABP=23.0785;AC=4;AF=0.666667;AN=6;AO=31;CIGAR=1X3M;DP=105;DPB=105;DPRA=0;EPP=70.3259;EPPR=76.8404;GTI=0;LEN=1;MEANALT=2;MQM=60;MQMR=60;NS=3;NUMALT=2;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=1225;QR=1320;RO=34;RPL=0;RPP=70.3259;RPPR=76.8404;RPR=31;RUN=1;SAF=31;SAP=70.3259;SAR=0;SRF=34;SRP=76.8404;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|1:72:24,28,20:24:950:28,20:1078,804:-81.2652,0,-69.7539,-22.2277,-11.9248,-94.3981 0|1:14:6,8,0:6:210:8,0:313,0:-24.3203,0,-15.0258,-26.1265,-17.4341,-43.1932 1|1:19:4,4,11:4:160:4,11:161,421:-33.4131,-21.3426,-33.3234,-0.0914714,0,-9.95923 dDocent_Contig_12771 9 . C T 106.664 . AB=0.148148;ABP=61.0771;AC=1;AF=0.166667;AN=6;AO=9;CIGAR=1X;DP=100;DPB=100;DPRA=1.77273;EPP=22.5536;EPPR=200.614;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=57.7033;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=0.945055;PAO=0;PQA=0;PQR=0;PRO=0;QA=350;QR=3514;RO=91;RPL=0;RPP=22.5536;RPPR=200.614;RPR=9;RUN=1;SAF=9;SAP=22.5536;SAR=0;SRF=91;SRP=200.614;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:54:46,8:46:1782:8:312:-12.1893,0,-143.78 0/0:22:22,0:22:838:0:0:0,-6.62266,-75.7134 0/0:24:23,1:23:894:1:38:0,-3.42745,-76.9279 dDocent_Contig_12773 9 . C T 420.619 . AB=0.164634;ABP=163.223;AC=3;AF=0.5;AN=6;AO=27;CIGAR=1X;DP=164;DPB=164;DPRA=0;EPP=61.6401;EPPR=298.331;GTI=0;LEN=1;MEANALT=1.33333;MQM=60;MQMR=59.75;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=0.985294;PAO=0;PQA=0;PQR=0;PRO=0;QA=1047;QR=5205;RO=136;RPL=0;RPP=61.6401;RPPR=298.331;RPR=27;RUN=1;SAF=27;SAP=61.6401;SAR=0;SRF=136;SRP=298.331;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:97:83,14:83:3190:14:543:-20.0161,0,-257.796 0/1:12:11,1:11:419:1:39:-0.284205,0,-34.4484 0/1:55:42,12:42:1596:12:465:-25.5659,0,-127.27 dDocent_Contig_12774 57 . C T 31.7855 . AB=0.12766;ABP=59.6072;AC=1;AF=0.166667;AN=6;AO=7;CIGAR=1X;DP=107;DPB=107;DPRA=4.36364;EPP=18.2106;EPPR=220.158;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=245;QR=3502;RO=100;RPL=7;RPP=18.2106;RPPR=220.158;RPR=0;RUN=1;SAF=7;SAP=18.2106;SAR=0;SRF=100;SRP=220.158;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:49:48,1:48:1704:1:36:0,-11.1522,-150.047 0/0:11:11,0:11:394:0:0:0,-3.31133,-35.8015 0/1:47:41,6:41:1404:6:209:-5.00217,0,-112.5 dDocent_Contig_12775 62 . G C 1260.15 . AB=0.65625;ABP=16.582;AC=3;AF=0.5;AN=6;AO=42;CIGAR=1X;DP=64;DPB=64;DPRA=0;EPP=94.2121;EPPR=50.7827;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=3.46945e-18;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=1659;QR=868;RO=22;RPL=42;RPP=94.2121;RPPR=50.7827;RPR=0;RUN=1;SAF=42;SAP=94.2121;SAR=0;SRF=22;SRP=50.7827;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:44:14,30:14:554:30:1177:-92.9638,0,-36.9573 0/1:14:7,7:7:280:7:277:-21.0844,0,-21.3573 0/1:6:1,5:1:34:5:205:-17.0288,0,-1.59273 dDocent_Contig_12776 9 . C T 68.9963 . AB=0.119048;ABP=108.895;AC=1;AF=0.166667;AN=6;AO=55;CIGAR=1X;DP=948;DPB=948;DPRA=0;EPP=122.441;EPPR=1942.14;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=2.77556e-17;PAIRED=0.981818;PAIREDR=0.979843;PAO=0;PQA=0;PQR=0;PRO=0;QA=2103;QR=34280;RO=893;RPL=0;RPP=122.441;RPPR=1942.14;RPR=55;RUN=1;SAF=55;SAP=122.441;SAR=0;SRF=893;SRP=1942.14;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:579:543,36:543:20878:36:1382:0,-49.6342,-1753.2 0/1:84:74,10:74:2828:10:374:-8.72354,0,-229.413 0/0:285:276,9:276:10574:9:347:0,-54.2043,-919.671 dDocent_Contig_12777 57 . C T 380.397 . AB=0.369565;ABP=9.80795;AC=2;AF=0.333333;AN=6;AO=17;CIGAR=1X;DP=59;DPB=59;DPRA=1.76923;EPP=39.9253;EPPR=94.2121;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=0.352941;PAIREDR=0.857143;PAO=0;PQA=0;PQR=0;PRO=0;QA=608;QR=1555;RO=42;RPL=5;RPP=9.26925;RPPR=3.83753;RPR=12;RUN=1;SAF=5;SAP=9.26925;SAR=12;SRF=19;SRP=3.83753;SRR=23;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:35:24,11:24:889:11:389:-24.8099,0,-69.7866 0/1:11:5,6:5:184:6:219:-16.7527,0,-13.6044 0/0:13:13,0:13:482:0:0:0,-3.91339,-43.7199 dDocent_Contig_12778 16 . A G 1030.03 . AB=0.336134;ABP=30.765;AC=3;AF=0.5;AN=6;AO=40;CIGAR=1X;DP=119;DPB=119;DPRA=0;EPP=89.8692;EPPR=174.557;GTI=0;LEN=1;MEANALT=1;MQM=58.325;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=0;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=1605;QR=3137;RO=79;RPL=0;RPP=89.8692;RPPR=174.557;RPR=40;RUN=1;SAF=40;SAP=89.8692;SAR=0;SRF=79;SRP=174.557;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:71:46,25:46:1833:25:1015:-70.2201,0,-143.811 0/1:14:10,4:10:407:4:146:-9.27894,0,-32.7756 0/1:34:23,11:23:897:11:444:-29.0268,0,-70.7998 dDocent_Contig_12779 9 . C T 183.202 . AB=0.217391;ABP=34.9215;AC=2;AF=0.333333;AN=6;AO=10;CIGAR=1X;DP=48;DPB=48;DPRA=11.5;EPP=24.725;EPPR=85.5263;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=388;QR=1459;RO=38;RPL=0;RPP=24.725;RPPR=85.5263;RPR=10;RUN=1;SAF=10;SAP=24.725;SAR=0;SRF=38;SRP=85.5263;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:27:24,3:24:922:3:117:-2.78257,0,-75.1674 0/0:2:2,0:2:77:0:0:0,-0.60206,-7.30914 0/1:19:12,7:12:460:7:271:-19.0369,0,-36.0301 dDocent_Contig_12780 17 . A G 380.655 . AB=0.340909;ABP=12.6832;AC=2;AF=0.333333;AN=6;AO=16;CIGAR=1X;DP=58;DPB=58;DPRA=0;EPP=37.7539;EPPR=94.2121;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=641;QR=1665;RO=42;RPL=0;RPP=37.7539;RPPR=94.2121;RPR=16;RUN=1;SAF=16;SAP=37.7539;SAR=0;SRF=42;SRP=94.2121;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:39:27,12:27:1073:12:479:-31.7201,0,-85.1166 0/1:5:2,3:2:82:3:122:-9.86734,0,-6.27453 0/0:14:13,1:13:510:1:40:0,-0.218741,-42.247 dDocent_Contig_12781 139 . T C 534.252 . AB=0.328947;ABP=22.325;AC=3;AF=0.5;AN=6;AO=25;CIGAR=2X;DP=76;DPB=76;DPRA=0;EPP=57.2971;EPPR=111.584;GTI=0;LEN=1;MEANALT=1.33333;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=0;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=896;QR=1889;RO=50;RPL=0;RPP=57.2971;RPPR=111.584;RPR=25;RUN=1;SAF=0;SAP=57.2971;SAR=25;SRF=0;SRP=111.584;SRR=50;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|1:49:35,13:35:1318:13:461:-27.2202,0,-104.307 0|1:8:3,5:3:119:5:183:-14.4186,0,-8.68715 0|1:19:12,7:12:452:7:252:-17.3093,0,-35.305 dDocent_Contig_12782 13 . C G 7456.59 . AB=0.449115;ABP=13.1759;AC=6;AF=1;AN=6;AO=203;CIGAR=2M1X3M1X3M;DP=452;DPB=452;DPRA=0;EPP=426.619;EPPR=44.2683;GTI=0;LEN=1;MEANALT=13.6667;MQM=59.665;MQMR=60;NS=3;NUMALT=7;ODDS=0;PAIRED=0.921182;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=7871;QR=752;RO=19;RPL=0;RPP=443.819;RPPR=44.2683;RPR=203;RUN=1;SAF=201;SAP=426.619;SAR=2;SRF=19;SRP=44.2683;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 1|1:240:9,21,17,11,15,24,101,23:9:355:21,17,11,15,24,101,23:819,665,435,556,938,3923,934:-367.196,-302.583,-325.471,-315.235,-277.122,-339.326,-334.106,-295.993,-308.644,-360.003,-324.728,-286.615,-299.267,-318.137,-349.422,-292.808,-254.695,-267.346,-286.217,-276.839,-314.792,-47.8885,-9.77586,-22.4271,-41.2977,-31.9214,0,-46.6935,-292.871,-254.758,-267.409,-286.28,-276.903,-244.982,-0.0618402,-315.156 1|1:88:2,15,4,5,1,3,49,2:2:79:15,4,5,1,3,49,2:571,154,192,37,118,1879,82:-193.945,-147.715,-149.701,-181.903,-141.572,-187.2,-178.788,-138.457,-172.645,-183.784,-191.521,-151.19,-185.378,-182.264,-197.722,-184.84,-144.509,-178.697,-175.582,-188.315,-190.438,-40.331,0,-34.188,-31.0736,-43.8072,-37.1249,-32.0823,-187.778,-147.447,-181.635,-178.521,-191.254,-184.572,-40.063,-193.678 1|1:124:8,15,3,6,7,3,53,11:8:318:15,3,6,7,3,53,11:589,105,240,278,120,2069,447:-189.931,-143.895,-165.562,-183.842,-161.581,-209.122,-172.568,-150.306,-190.254,-196.945,-170.332,-148.07,-188.017,-176.743,-194.407,-182.454,-160.192,-200.139,-188.866,-186.629,-207.733,-22.2613,0,-39.9482,-28.6732,-26.4374,-38.5588,-32.4896,-155.469,-133.207,-173.155,-161.881,-159.644,-171.767,-11.5734,-178.34 dDocent_Contig_12783 34 . G A 226.935 . AB=0.121053;ABP=239.998;AC=2;AF=0.333333;AN=6;AO=35;CIGAR=1X;DP=387;DPB=387;DPRA=0;EPP=25.4075;EPPR=194.1;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=0.142857;PAIREDR=0.673295;PAO=0;PQA=0;PQR=0;PRO=0;QA=1401;QR=13933;RO=352;RPL=0;RPP=79.0118;RPPR=767.369;RPR=35;RUN=1;SAF=8;SAP=25.4075;SAR=27;SRF=264;SRP=194.1;SRR=88;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:197:185,12:185:7294:12:482:0,-15.5715,-612.39 0/1:67:59,8:59:2317:8:320:-8.99631,0,-188.539 0/1:123:108,15:108:4322:15:599:-17.2201,0,-351.9 dDocent_Contig_12785 18 . A C 161.957 . AB=0.318182;ABP=9.32731;AC=2;AF=0.333333;AN=6;AO=9;CIGAR=1X;DP=57;DPB=57;DPRA=0;EPP=22.5536;EPPR=107.241;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=59.75;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=0.958333;PAO=0;PQA=0;PQR=0;PRO=0;QA=350;QR=1887;RO=48;RPL=0;RPP=22.5536;RPPR=107.241;RPR=9;RUN=1;SAF=9;SAP=22.5536;SAR=0;SRF=48;SRP=107.241;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:35:33,2:33:1277:2:66:0,-4.27032,-108.933 0/1:7:5,2:5:202:2:82:-5.67247,0,-16.387 0/1:15:10,5:10:408:5:202:-14.046,0,-32.5651 dDocent_Contig_12786 28 . A G 2003.76 . AB=0.0566038;ABP=184.021;AC=0;AF=0;AN=6;AO=6;CIGAR=1X3M6D2M1X;DP=168;DPB=152.769;DPRA=0;EPP=16.0391;EPPR=120.27;GTI=0;LEN=1;MEANALT=8;MQM=60;MQMR=60;NS=3;NUMALT=4;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=227;QR=2052;RO=54;RPL=0;RPP=16.0391;RPPR=120.27;RPR=6;RUN=1;SAF=6;SAP=16.0391;SAR=0;SRF=54;SRP=120.27;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|0:106:32,6,16,39,7:32:1239:6,16,39,7:227,612,1565,276:-119.325,-110.355,-210.328,-78.7537,-161.93,-175.716,0,-83.1816,-51.5785,-90.0443,-106.25,-189.427,-157.825,-79.076,-205.922 0|0:11:3,0,1,6,0:3:117:0,1,6,0:0,40,237,0:-18.6318,-19.5349,-29.154,-16.2375,-25.8575,-25.5565,0,-9.6414,-6.33985,-7.83522,-19.5349,-29.154,-25.8575,-9.6414,-29.154 0|0:51:19,0,9,22,1:19:696:0,9,22,1:0,343,893,40:-67.9426,-73.6622,-130.525,-45.5328,-102.39,-99.6806,0,-56.8639,-28.7236,-50.2412,-70.367,-127.23,-99.0945,-53.5678,-126.929 dDocent_Contig_12787 115 . A G 197.839 . AB=0;ABP=0;AC=2;AF=0.333333;AN=6;AO=7;CIGAR=1X;DP=30;DPB=30;DPRA=0.75;EPP=18.2106;EPPR=52.9542;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=57.8261;NS=3;NUMALT=1;ODDS=4.33681e-19;PAIRED=1;PAIREDR=0.956522;PAO=0;PQA=0;PQR=0;PRO=0;QA=232;QR=791;RO=23;RPL=0;RPP=18.2106;RPPR=52.9542;RPR=7;RUN=1;SAF=0;SAP=18.2106;SAR=7;SRF=0;SRP=52.9542;SRR=23;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:12:12,0:12:411:0:0:0,-3.61236,-37.3193 1/1:6:0,6:0:0:6:214:-19.6078,-1.80618,0 0/0:12:11,1:11:380:1:18:0,-1.81239,-30.5507 dDocent_Contig_12788 21 . G A 3964.46 . AB=0.0909091;ABP=226.869;AC=0;AF=0;AN=6;AO=14;CIGAR=1X3M1D16M;DP=215;DPB=207.095;DPRA=0;EPP=33.4109;EPPR=105.07;GTI=0;LEN=1;MEANALT=8;MQM=60;MQMR=60;NS=3;NUMALT=3;ODDS=2.77556e-17;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=516;QR=1855;RO=47;RPL=0;RPP=33.4109;RPPR=105.07;RPR=14;RUN=1;SAF=14;SAP=33.4109;SAR=0;SRF=47;SRP=105.07;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|0:154:20,14,8,102:20:787:14,8,102:516,298,4005:-323.386,-287.226,-347.754,-305.019,-327.58,-367.352,0,-22.5754,-40.369,-34.054 0|0:8:4,0,0,4:4:159:0,0,4:0,0,126:-9.23757,-10.4417,-23.574,-10.4417,-23.574,-23.574,0,-13.4882,-13.4882,-12.2841 0|0:53:23,0,2,24:23:909:0,2,24:0,59,928:-69.3455,-76.2692,-151.084,-71.5707,-146.384,-145.782,0,-74.8691,-70.1712,-67.6444 dDocent_Contig_12790 186 . T C 426.487 . AB=0.444444;ABP=3.9754;AC=3;AF=0.5;AN=6;AO=16;CIGAR=1X;DP=36;DPB=36;DPRA=0;EPP=37.7539;EPPR=46.4397;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=643;QR=790;RO=20;RPL=16;RPP=37.7539;RPPR=46.4397;RPR=0;RUN=1;SAF=0;SAP=37.7539;SAR=16;SRF=0;SRP=46.4397;SRR=20;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:10:3,7:3:123:7:282:-22.7429,0,-8.45449 0/1:12:7,5:7:279:5:198:-14.5847,0,-21.8677 0/1:14:10,4:10:388:4:163:-10.844,0,-31.0574 dDocent_Contig_12792 13 . C G 300.367 . AB=0.4;ABP=4.74748;AC=3;AF=0.5;AN=6;AO=10;CIGAR=1X;DP=34;DPB=34;DPRA=0.916667;EPP=24.725;EPPR=55.1256;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=409;QR=970;RO=24;RPL=0;RPP=24.725;RPPR=55.1256;RPR=10;RUN=1;SAF=10;SAP=24.725;SAR=0;SRF=24;SRP=55.1256;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:20:12,8:12:481:8:327:-23.7795,0,-37.6199 1/1:2:0,2:0:0:2:82:-7.77968,-0.60206,0 0/0:12:12,0:12:489:0:0:0,-3.61236,-44.3611 dDocent_Contig_12793 17 . A C 80.5212 . AB=0.25;ABP=11.6962;AC=1;AF=0.166667;AN=6;AO=4;CIGAR=1X;DP=41;DPB=41;DPRA=1.28;EPP=11.6962;EPPR=83.3548;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=0.25;PAIREDR=0.864865;PAO=0;PQA=0;PQR=0;PRO=0;QA=159;QR=1462;RO=37;RPL=0;RPP=11.6962;RPPR=83.3548;RPR=4;RUN=1;SAF=4;SAP=11.6962;SAR=0;SRF=37;SRP=83.3548;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:22:22,0:22:872:0:0:0,-6.62266,-78.795 0/0:3:3,0:3:120:0:0:0,-0.90309,-11.1877 0/1:16:12,4:12:470:4:159:-9.87585,0,-37.8303 dDocent_Contig_12794 80 . T C 313.632 . AB=0.20354;ABP=89.2735;AC=3;AF=0.5;AN=6;AO=23;CIGAR=1X;DP=113;DPB=113;DPRA=0;EPP=52.9542;EPPR=198.443;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=0.695652;PAIREDR=0.811111;PAO=0;PQA=0;PQR=0;PRO=0;QA=777;QR=2955;RO=90;RPL=23;RPP=52.9542;RPPR=198.443;RPR=0;RUN=1;SAF=23;SAP=52.9542;SAR=0;SRF=90;SRP=198.443;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:63:51,12:51:1671:12:418:-18.989,0,-131.706 0/1:10:5,5:5:165:5:153:-11.0616,0,-12.1654 0/1:40:34,6:34:1119:6:206:-6.83552,0,-88.9664 dDocent_Contig_12795 29 . C T 116.483 . AB=0.162791;ABP=45.4803;AC=1;AF=0.166667;AN=6;AO=9;CIGAR=1X;DP=80;DPB=80;DPRA=3.13636;EPP=22.5536;EPPR=157.185;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=365;QR=2849;RO=71;RPL=0;RPP=22.5536;RPPR=157.185;RPR=9;RUN=1;SAF=9;SAP=22.5536;SAR=0;SRF=71;SRP=157.185;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:43:36,7:36:1462:7:286:-13.1705,0,-118.878 0/0:11:11,0:11:423:0:0:0,-3.31133,-38.4175 0/0:26:24,2:24:964:2:79:0,-0.329535,-79.5618 dDocent_Contig_12796 13 . T C 1117.14 . AB=0.121212;ABP=1072.3;AC=3;AF=0.5;AN=6;AO=104;CIGAR=1X;DP=858;DPB=858;DPRA=0;EPP=228.843;EPPR=1638.13;GTI=0;LEN=1;MEANALT=1.33333;MQM=58.7596;MQMR=59.988;NS=3;NUMALT=1;ODDS=0;PAIRED=0.509615;PAIREDR=0.836653;PAO=0;PQA=0;PQR=0;PRO=0;QA=4167;QR=28943;RO=753;RPL=0;RPP=228.843;RPPR=1638.13;RPR=104;RUN=1;SAF=104;SAP=228.843;SAR=0;SRF=753;SRP=1638.13;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:524:477,46:477:18282:46:1848:-8.5268,0,-1486.75 0/1:107:84,23:84:3209:23:918:-50.6997,0,-256.725 0/1:227:192,35:192:7452:35:1401:-58.0102,0,-602.084 dDocent_Contig_12797 11 . A T 159.482 . AB=0.204082;ABP=40.2799;AC=3;AF=0.5;AN=6;AO=10;CIGAR=1X;DP=49;DPB=49;DPRA=0;EPP=24.725;EPPR=87.6977;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=390;QR=1530;RO=39;RPL=0;RPP=24.725;RPPR=87.6977;RPR=10;RUN=1;SAF=10;SAP=24.725;SAR=0;SRF=39;SRP=87.6977;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:22:18,4:18:688:4:164:-8.52724,0,-55.6115 0/1:14:11,3:11:439:3:107:-5.76198,0,-35.6497 0/1:13:10,3:10:403:3:119:-7.18179,0,-32.7161 dDocent_Contig_12798 14 . G A 105.128 . AB=0.2;ABP=26.4622;AC=1;AF=0.166667;AN=6;AO=6;CIGAR=1X;DP=43;DPB=43;DPRA=4.61538;EPP=16.0391;EPPR=83.3548;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=230;QR=1431;RO=37;RPL=0;RPP=16.0391;RPPR=83.3548;RPR=6;RUN=1;SAF=6;SAP=16.0391;SAR=0;SRF=37;SRP=83.3548;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:30:24,6:24:929:6:230:-12.0356,0,-74.8894 0/0:4:4,0:4:147:0:0:0,-1.20412,-13.5877 0/0:9:9,0:9:355:0:0:0,-2.70927,-32.3111 dDocent_Contig_12799 34 . A T 46.9725 . AB=0.272727;ABP=7.94546;AC=1;AF=0.166667;AN=6;AO=3;CIGAR=2X;DP=32;DPB=32;DPRA=1.04762;EPP=9.52472;EPPR=65.983;GTI=0;LEN=1;MEANALT=1;MQM=37;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=0;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=119;QR=1148;RO=29;RPL=0;RPP=9.52472;RPPR=65.983;RPR=3;RUN=1;SAF=3;SAP=9.52472;SAR=0;SRF=29;SRP=65.983;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|0:15:15,0:15:591:0:0:0,-4.51545,-53.5297 0|1:11:8,3:8:320:3:119:-6.52113,0,-25.8563 0|0:6:6,0:6:237:0:0:0,-1.80618,-21.7026 dDocent_Contig_12800 135 . C T 31.8877 . AB=0;ABP=0;AC=1;AF=0.166667;AN=6;AO=5;CIGAR=1X1M;DP=74;DPB=74;DPRA=0;EPP=13.8677;EPPR=115.83;GTI=0;LEN=1;MEANALT=1;MQM=23.6;MQMR=55.5522;NS=3;NUMALT=2;ODDS=1.73472e-18;PAIRED=0;PAIREDR=0.626866;PAO=0;PQA=0;PQR=0;PRO=0;QA=119;QR=2297;RO=67;RPL=0;RPP=13.8677;RPPR=148.499;RPR=5;RUN=1;SAF=0;SAP=13.8677;SAR=5;SRF=4;SRP=115.83;SRR=63;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|0:49:46,0,3:46:1575:0,3:0,81:0,-13.8474,-140.362,-10.6423,-137.316,-136.413 0|0:18:16,0,2:16:551:0,2:0,38:0,-4.81648,-49.6783,-2.06087,-47.118,-46.5159 0|1:7:5,2,0:5:171:2,0:75,0:-5.01238,0,-13.5999,-6.51753,-14.2019,-20.3543 dDocent_Contig_12802 111 . G A 745.955 . AB=0.134615;ABP=63.3104;AC=4;AF=0.666667;AN=6;AO=7;CIGAR=1X4M;DP=79;DPB=79;DPRA=0;EPP=18.2106;EPPR=48.6112;GTI=0;LEN=1;MEANALT=5;MQM=41.1429;MQMR=60;NS=3;NUMALT=4;ODDS=0;PAIRED=0;PAIREDR=0.952381;PAO=0;PQA=0;PQR=0;PRO=0;QA=241;QR=720;RO=21;RPL=0;RPP=18.2106;RPPR=48.6112;RPR=7;RUN=1;SAF=0;SAP=18.2106;SAR=7;SRF=0;SRP=48.6112;SRR=21;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|1:27:8,12,0,0,5:8:277:12,0,0,5:395,0,0,168:-26.1273,0,-18.9066,-28.5355,-22.5189,-51.0585,-28.5355,-22.5189,-51.0585,-51.0585,-14.9781,-8.97278,-37.5064,-37.5064,-36.0012 1|1:21:3,8,3,5,1:3:102:8,3,5,1:278,102,171,36:-26.0921,-4.92352,-10.7903,-18.7253,-4.92808,-26.0966,-13.7948,0,-13.7993,-20.5633,-24.0564,-10.2591,-24.0609,-19.1298,-32.0299 0|1:31:10,12,2,2,4:10:341:12,2,2,4:404,70,70,140:-27.899,0,-24.0521,-25.2157,-21.9722,-52.2862,-25.248,-22.0044,-47.2275,-52.3183,-19.5146,-16.2726,-41.4951,-41.5273,-45.9841 dDocent_Contig_12804 97 . T G 50.9874 . AB=0.375;ABP=4.09604;AC=1;AF=0.166667;AN=6;AO=3;CIGAR=1X;DP=16;DPB=16;DPRA=2;EPP=9.52472;EPPR=31.2394;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=100;QR=454;RO=13;RPL=3;RPP=9.52472;RPPR=31.2394;RPR=0;RUN=1;SAF=3;SAP=9.52472;SAR=0;SRF=13;SRP=31.2394;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:3:3,0:3:104:0:0:0,-0.90309,-9.7028 0/0:5:5,0:5:176:0:0:0,-1.50515,-16.1852 0/1:8:5,3:5:174:3:100:-6.92242,0,-13.5937 dDocent_Contig_12805 15 . A T 148.89 . AB=0.368421;ABP=5.8675;AC=1;AF=0.166667;AN=6;AO=7;CIGAR=1X;DP=33;DPB=33;DPRA=2.71429;EPP=18.2106;EPPR=59.4686;GTI=0;LEN=1;MEANALT=1;MQM=40;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=0;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=283;QR=1037;RO=26;RPL=0;RPP=18.2106;RPPR=59.4686;RPR=7;RUN=1;SAF=7;SAP=18.2106;SAR=0;SRF=26;SRP=59.4686;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:19:12,7:12:473:7:283:-16.4118,0,-37.1984 0/0:6:6,0:6:245:0:0:0,-1.80618,-22.4295 0/0:8:8,0:8:319:0:0:0,-2.40824,-29.076 dDocent_Contig_12806 106 . N A 126.683 . AB=0;ABP=0;AC=2;AF=1;AN=2;AO=4;CIGAR=2X;DP=4;DPB=4;DPRA=0;EPP=11.6962;EPPR=0;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=0;NS=1;NUMALT=1;ODDS=7.37776;PAIRED=1;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=137;QR=0;RO=0;RPL=0;RPP=11.6962;RPPR=0;RPR=4;RUN=1;SAF=0;SAP=11.6962;SAR=4;SRF=0;SRP=0;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL .:.:.:.:.:.:.:. .:.:.:.:.:.:.:. 1|1:4:0,4:0:0:4:137:-12.6681,-1.20412,0 dDocent_Contig_12807 12 . G A 85.6227 . AB=0.132075;ABP=65.3275;AC=2;AF=0.333333;AN=6;AO=7;CIGAR=2X1M1X3M3X2M2D1M;DP=67;DPB=64.3333;DPRA=0;EPP=18.2106;EPPR=102.898;GTI=0;LEN=1;MEANALT=2.5;MQM=34.4286;MQMR=60;NS=3;NUMALT=3;ODDS=6.93889e-18;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=264;QR=1785;RO=46;RPL=0;RPP=18.2106;RPPR=102.898;RPR=7;RUN=1;SAF=7;SAP=18.2106;SAR=0;SRF=46;SRP=102.898;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|1:36:28,3,4,0:28:1087:3,4,0:111,152,0:-2.34569,-7.16711,-95.6187,0,-85.8099,-88.2564,-10.7745,-96.5218,-89.4605,-100.175 0|0:14:6,8,0,0:6:227:8,0,0:311,0,0:-7.70923,0,-16.5773,-9.51541,-18.9855,-28.2149,-9.51541,-18.9855,-28.2149,-28.2149 0|1:17:12,0,3,2:12:471:0,3,2:0,112,74:-3.96572,-7.57808,-46.3582,0,-38.7676,-37.8645,-1.73313,-40.5324,-32.9445,-39.9304 dDocent_Contig_12809 126 . T C 94.0917 . AB=0.21875;ABP=24.9965;AC=2;AF=0.5;AN=4;AO=7;CIGAR=1X;DP=32;DPB=32;DPRA=0;EPP=18.2106;EPPR=57.2971;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=2;NUMALT=1;ODDS=0;PAIRED=0.714286;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=245;QR=881;RO=25;RPL=0;RPP=18.2106;RPPR=57.2971;RPR=7;RUN=1;SAF=0;SAP=18.2106;SAR=7;SRF=0;SRP=57.2971;SRR=25;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:22:18,4:18:634:4:140:-6.32227,0,-50.7641 ./.:.:.:.:.:.:.:. 0/1:10:7,3:7:247:3:105:-6.78586,0,-19.563 dDocent_Contig_12810 22 . A C 150.823 . AB=0.12844;ABP=133.717;AC=2;AF=0.333333;AN=6;AO=14;CIGAR=1X;DP=129;DPB=129;DPRA=2.725;EPP=33.4109;EPPR=252.73;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=563;QR=4589;RO=115;RPL=0;RPP=33.4109;RPPR=252.73;RPR=14;RUN=1;SAF=14;SAP=33.4109;SAR=0;SRF=115;SRP=252.73;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:48:43,5:43:1723:5:203:-4.20362,0,-140.844 0/1:61:52,9:52:2071:9:360:-14.4007,0,-168.214 0/0:20:20,0:20:795:0:0:0,-6.0206,-71.8665 dDocent_Contig_12811 28 . C T 179.906 . AB=0.164384;ABP=74.4309;AC=2;AF=0.333333;AN=6;AO=12;CIGAR=1X;DP=91;DPB=91;DPRA=2.02778;EPP=29.068;EPPR=172.385;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=475;QR=3049;RO=78;RPL=0;RPP=29.068;RPPR=172.385;RPR=12;RUN=1;SAF=12;SAP=29.068;SAR=0;SRF=78;SRP=172.385;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:46:39,7:39:1510:7:281:-11.8137,0,-122.294 0/0:18:17,0:17:674:0:0:0,-5.11751,-60.7879 0/1:27:22,5:22:865:5:194:-9.6998,0,-70.0362 dDocent_Contig_12812 25 . T C 56.6823 . AB=0.166667;ABP=26.1727;AC=1;AF=0.166667;AN=6;AO=4;CIGAR=1X;DP=51;DPB=51;DPRA=1.77778;EPP=11.6962;EPPR=105.07;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=156;QR=1875;RO=47;RPL=0;RPP=11.6962;RPPR=105.07;RPR=4;RUN=1;SAF=4;SAP=11.6962;SAR=0;SRF=47;SRP=105.07;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:24:20,4:20:800:4:156:-7.19111,0,-65.0927 0/0:17:17,0:17:672:0:0:0,-5.11751,-60.8108 0/0:10:10,0:10:403:0:0:0,-3.0103,-36.6295 dDocent_Contig_12813 9 . C T 688.959 . AB=0.214286;ABP=92.3509;AC=2;AF=0.333333;AN=6;AO=27;CIGAR=1X2M1X;DP=126;DPB=126;DPRA=0;EPP=61.6401;EPPR=187.585;GTI=0;LEN=1;MEANALT=2;MQM=58.8519;MQMR=60;NS=3;NUMALT=2;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=1053;QR=3341;RO=85;RPL=0;RPP=61.6401;RPPR=187.585;RPR=27;RUN=1;SAF=27;SAP=61.6401;SAR=0;SRF=85;SRP=187.585;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|1:54:36,14,4:36:1419:14,4:542,159:-33.6626,0,-112.527,-31.4066,-103.651,-146.952 0|1:42:27,11,4:27:1058:11,4:431,164:-27.2474,0,-83.6738,-21.834,-73.4465,-107.631 0|0:30:22,2,6:22:864:2,6:80,244:-13.5088,-13.5429,-83.993,0,-64.4656,-69.2502 dDocent_Contig_12814 1 . N G 66.4288 . AB=0;ABP=0;AC=2;AF=1;AN=2;AO=2;CIGAR=1X;DP=2;DPB=2;DPRA=0;EPP=7.35324;EPPR=0;GTI=0;LEN=1;MEANALT=1;MQM=55;MQMR=0;NS=1;NUMALT=1;ODDS=5.99146;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=70;QR=0;RO=0;RPL=0;RPP=7.35324;RPPR=0;RPR=2;RUN=1;SAF=0;SAP=7.35324;SAR=2;SRF=0;SRP=0;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 1/1:2:0,2:0:0:2:70:-6.64179,-0.60206,0 ./.:.:.:.:.:.:.:. ./.:.:.:.:.:.:.:. dDocent_Contig_12815 25 . A G 41.6356 . AB=0.12766;ABP=59.6072;AC=2;AF=0.333333;AN=6;AO=6;CIGAR=1X;DP=73;DPB=73;DPRA=0.903846;EPP=16.0391;EPPR=148.499;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=234;QR=2643;RO=67;RPL=0;RPP=16.0391;RPPR=148.499;RPR=6;RUN=1;SAF=6;SAP=16.0391;SAR=0;SRF=67;SRP=148.499;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:33:29,4:29:1140:4:162:-5.03297,0,-92.9497 0/1:14:12,2:12:481:2:72:-2.6199,0,-39.4267 0/0:26:26,0:26:1022:0:0:0,-7.82678,-92.2763 dDocent_Contig_12818 8 . T G 44.6326 . AB=0.142857;ABP=41.7866;AC=1;AF=0.166667;AN=6;AO=5;CIGAR=1X;DP=114;DPB=114;DPRA=0.886076;EPP=13.8677;EPPR=239.701;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=183;QR=4171;RO=109;RPL=0;RPP=13.8677;RPPR=239.701;RPR=5;RUN=1;SAF=5;SAP=13.8677;SAR=0;SRF=109;SRP=239.701;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:74:74,0:74:2817:0:0:0,-22.2762,-253.705 0/0:5:5,0:5:191:0:0:0,-1.50515,-17.5581 0/1:35:30,5:30:1163:5:183:-6.28711,0,-94.4327 dDocent_Contig_12819 32 . C T 660.576 . AB=0.378788;ABP=11.433;AC=2;AF=0.333333;AN=6;AO=25;CIGAR=1M1I1M3X;DP=66;DPB=71.2;DPRA=0;EPP=57.2971;EPPR=79.0118;GTI=0;LEN=1;MEANALT=2;MQM=45.44;MQMR=60;NS=3;NUMALT=2;ODDS=0;PAIRED=0;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=1003;QR=1379;RO=35;RPL=0;RPP=57.2971;RPPR=79.0118;RPR=25;RUN=1;SAF=25;SAP=57.2971;SAR=0;SRF=35;SRP=79.0118;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|1:45:20,20,4:20:784:20,4:800,161:-57.9192,0,-58.4383,-50.669,-51.1886,-113.934 0|0:12:10,1,1:10:398:1,1:40,41:-0.383375,-0.191881,-32.6521,0,-29.568,-32.4777 0|1:9:5,4,0:5:197:4,0:163,0:-11.6556,0,-15.3969,-13.1608,-16.601,-29.3712 dDocent_Contig_12820 7 . A T 84.417 . AB=0.217391;ABP=18.9659;AC=1;AF=0.166667;AN=6;AO=6;CIGAR=1X;DP=60;DPB=60;DPRA=2.22727;EPP=16.0391;EPPR=118.098;GTI=0;LEN=1;MEANALT=1.5;MQM=55.5;MQMR=56.2075;NS=3;NUMALT=1;ODDS=0;PAIRED=0.833333;PAIREDR=0.849057;PAO=0;PQA=0;PQR=0;PRO=0;QA=217;QR=2008;RO=53;RPL=0;RPP=16.0391;RPPR=118.098;RPR=6;RUN=1;SAF=6;SAP=16.0391;SAR=0;SRF=53;SRP=118.098;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:26:24,1:24:909:1:30:0,-4.86312,-78.3557 0/0:11:11,0:11:402:0:0:0,-3.31133,-36.4078 0/1:23:18,5:18:697:5:187:-10.2656,0,-53.8417 dDocent_Contig_12822 85 . C A 421.289 . AB=0.268293;ABP=41.2494;AC=2;AF=0.333333;AN=6;AO=23;CIGAR=1X;DP=94;DPB=94;DPRA=0;EPP=52.9542;EPPR=157.185;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=0.943662;PAO=0;PQA=0;PQR=0;PRO=0;QA=809;QR=2508;RO=71;RPL=23;RPP=52.9542;RPPR=157.185;RPR=0;RUN=1;SAF=23;SAP=52.9542;SAR=0;SRF=71;SRP=157.185;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:72:55,17:55:1950:17:596:-32.2923,0,-154.1 0/0:12:11,1:11:383:1:35:0,-0.113731,-31.305 0/1:10:5,5:5:175:5:178:-13.3584,0,-13.0834 dDocent_Contig_12823 102 . N C 213.922 . AB=0;ABP=0;AC=6;AF=1;AN=6;AO=7;CIGAR=6X;DP=7;DPB=7;DPRA=0;EPP=18.2106;EPPR=0;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=0;NS=3;NUMALT=1;ODDS=0;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=222;QR=0;RO=0;RPL=0;RPP=18.2106;RPPR=0;RPR=7;RUN=1;SAF=7;SAP=18.2106;SAR=0;SRF=0;SRP=0;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 1|1:2:0,2:0:0:2:51:-4.84471,-0.60206,0 1|1:3:0,3:0:0:3:102:-9.5168,-0.90309,0 1|1:2:0,2:0:0:2:69:-6.55266,-0.60206,0 dDocent_Contig_12824 9 . C T 9438.47 . AB=0.0642978;ABP=977.509;AC=0;AF=0;AN=6;AO=38;CIGAR=2X6M1X;DP=591;DPB=591.333;DPRA=0;EPP=85.5263;EPPR=72.4974;GTI=0;LEN=1;MEANALT=10.6667;MQM=53.4211;MQMR=60;NS=3;NUMALT=7;ODDS=0;PAIRED=0.315789;PAIREDR=0.03125;PAO=0.5;PQA=17.5;PQR=0;PRO=0;QA=1428;QR=1258;RO=32;RPL=0;RPP=85.5263;RPPR=72.4974;RPR=38;RUN=1;SAF=38;SAP=85.5263;SAR=0;SRF=32;SRP=72.4974;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|0:266:19,35,31,1,102,7,18,42:19:747:35,31,1,102,7,18,42:1345,1192,37,3890,265,666,1611:-381.297,-276.663,-327.572,-290.088,-241.18,-342.201,-383.989,-335.081,-348.506,-445.133,-70.7249,-21.8172,-35.2425,-129.143,-101.465,-365.29,-316.383,-329.807,-423.708,-110.445,-424.628,-333.202,-284.294,-297.719,-391.62,-78.3567,-372.921,-389.228,-254.846,-205.938,-219.363,-313.264,0,-294.565,-262.477,-303.648 0|0:203:11,20,13,5,90,11,12,38:11:436:20,13,5,90,11,12,38:769,494,183,3419,394,452,1448:-357.774,-297.975,-327.845,-320.857,-293.637,-352.834,-346.403,-319.183,-342.065,-380.788,-82.808,-55.5881,-78.4702,-104.017,-91.6064,-328.958,-301.738,-324.62,-350.166,-86.5726,-361.537,-324.107,-296.887,-319.769,-345.315,-81.7207,-327.87,-356.385,-242.387,-215.167,-238.049,-263.595,0,-246.151,-241.299,-266.839 0|0:122:2,8,9,9,42,6,8,28:2:75:8,9,9,42,6,8,28:311,333,346,1577,234,310,1080:-210.299,-185.877,-189.611,-183.845,-164.963,-187.279,-183.033,-164.151,-162.12,-186.467,-82.4365,-63.5543,-61.5236,-60.7112,-75.9361,-191.667,-172.785,-170.754,-169.942,-69.3445,-196.004,-185.54,-166.658,-164.627,-163.814,-63.2173,-172.448,-189.274,-122.324,-103.442,-101.411,-100.598,0,-109.232,-103.105,-120.038 dDocent_Contig_12825 120 . G T 72.8023 . AB=0.217391;ABP=18.9659;AC=1;AF=0.166667;AN=6;AO=5;CIGAR=1X;DP=34;DPB=34;DPRA=4.18182;EPP=13.8677;EPPR=65.983;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=171;QR=1006;RO=29;RPL=0;RPP=13.8677;RPPR=65.983;RPR=5;RUN=1;SAF=0;SAP=13.8677;SAR=5;SRF=0;SRP=65.983;SRR=29;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:23:18,5:18:623:5:171:-8.80304,0,-49.4714 0/0:6:6,0:6:209:0:0:0,-1.80618,-19.1511 0/0:5:5,0:5:174:0:0:0,-1.50515,-16.002 dDocent_Contig_12826 36 . C G 154.436 . AB=0.145455;ABP=63.0614;AC=0;AF=0;AN=6;AO=8;CIGAR=3M1X1M;DP=57;DPB=50.4;DPRA=13.75;EPP=20.3821;EPPR=85.5263;GTI=0;LEN=1;MEANALT=2;MQM=60;MQMR=60;NS=3;NUMALT=2;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=327;QR=1456;RO=38;RPL=0;RPP=20.3821;RPPR=85.5263;RPR=8;RUN=1;SAF=8;SAP=20.3821;SAR=0;SRF=38;SRP=85.5263;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|0:35:24,6,5:24:930:6,5:220,204:-10.7336,0,-74.5765,-1.10824,-59.5478,-76.0192 0|0:2:2,0,0:2:81:0,0:0,0:0,-0.60206,-7.68573,-0.60206,-7.68573,-7.68573 0|0:20:12,5,3:12:445:5,3:149,123:-8.21783,0,-34.8709,-1.63611,-26.216,-37.1914 dDocent_Contig_12827 9 . C T 84.719 . AB=0.142857;ABP=18.5208;AC=3;AF=0.5;AN=6;AO=5;CIGAR=4X2M1X;DP=29;DPB=29;DPRA=0;EPP=13.8677;EPPR=55.1256;GTI=0;LEN=1;MEANALT=1;MQM=44;MQMR=60;NS=3;NUMALT=1;ODDS=1.73472e-18;PAIRED=0;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=192;QR=940;RO=24;RPL=0;RPP=13.8677;RPPR=55.1256;RPR=5;RUN=1;SAF=5;SAP=13.8677;SAR=0;SRF=24;SRP=55.1256;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 1|1:2:0,2:0:0:2:80:-7.3235,-0.60206,0 0|0:13:12,1:12:461:1:38:0,-0.210699,-38.1356 0|1:14:12,2:12:479:2:74:-2.63802,0,-39.2485 dDocent_Contig_12828 107 . N T 311.371 . AB=0;ABP=0;AC=6;AF=1;AN=6;AO=10;CIGAR=1X;DP=10;DPB=10;DPRA=0;EPP=24.725;EPPR=0;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=0;NS=3;NUMALT=1;ODDS=1.69407e-21;PAIRED=1;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=331;QR=0;RO=0;RPL=0;RPP=24.725;RPPR=0;RPR=10;RUN=1;SAF=0;SAP=24.725;SAR=10;SRF=0;SRP=0;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 1/1:8:0,8:0:0:8:278:-25.358,-2.40824,0 1/1:1:0,1:0:0:1:20:-1.99996,-0.30103,0 1/1:1:0,1:0:0:1:33:-3.29913,-0.30103,0 dDocent_Contig_12829 14 . T C 1336.86 . AB=0.222222;ABP=51.2652;AC=3;AF=0.5;AN=6;AO=16;CIGAR=1X1M;DP=94;DPB=94;DPRA=0;EPP=37.7539;EPPR=85.5263;GTI=0;LEN=1;MEANALT=2;MQM=60;MQMR=60;NS=3;NUMALT=2;ODDS=0;PAIRED=0.5625;PAIREDR=0.921053;PAO=0;PQA=0;PQR=0;PRO=0;QA=635;QR=1541;RO=38;RPL=0;RPP=37.7539;RPPR=85.5263;RPR=16;RUN=1;SAF=16;SAP=37.7539;SAR=0;SRF=38;SRP=85.5263;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|1:52:12,33,7:12:485:33,7:1311,284:-104.308,0,-30.0499,-84.4973,-16.5618,-122.377 0|1:20:8,3,9:8:322:3,9:107,351:-26.4653,-20.1639,-45.8049,0,-17.866,-23.8622 0|1:22:18,4,0:18:734:4,0:163,0:-8.43577,0,-59.7604,-13.8543,-60.9645,-74.4118 dDocent_Contig_12830 21 . C T 96.4308 . AB=0.194444;ABP=32.2045;AC=3;AF=0.5;AN=6;AO=7;CIGAR=1X;DP=36;DPB=36;DPRA=0;EPP=18.2106;EPPR=65.983;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=271;QR=1125;RO=29;RPL=0;RPP=18.2106;RPPR=65.983;RPR=7;RUN=1;SAF=7;SAP=18.2106;SAR=0;SRF=29;SRP=65.983;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:14:11,3:11:438:3:117:-6.69549,0,-35.5609 0/1:14:11,3:11:422:3:114:-6.4178,0,-34.1169 0/1:8:7,1:7:265:1:40:-1.58744,0,-21.7975 dDocent_Contig_12833 48 . G A 41.4962 . AB=0.333333;ABP=4.45795;AC=1;AF=0.166667;AN=6;AO=2;CIGAR=1X;DP=41;DPB=41;DPRA=0.342857;EPP=7.35324;EPPR=87.6977;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=0.923077;PAO=0;PQA=0;PQR=0;PRO=0;QA=82;QR=1537;RO=39;RPL=0;RPP=7.35324;RPPR=87.6977;RPR=2;RUN=1;SAF=2;SAP=7.35324;SAR=0;SRF=39;SRP=87.6977;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:25:25,0:25:1007:0:0:0,-7.52575,-90.9246 0/1:6:4,2:4:161:2:82:-5.9735,0,-13.0691 0/0:10:10,0:10:369:0:0:0,-3.0103,-33.5459 dDocent_Contig_12834 11 . A C 337.391 . AB=0.140449;ABP=202.883;AC=3;AF=0.5;AN=6;AO=25;CIGAR=1X;DP=178;DPB=178;DPRA=0;EPP=57.2971;EPPR=335.246;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=59.3725;NS=3;NUMALT=1;ODDS=1.38778e-17;PAIRED=1;PAIREDR=0.973856;PAO=0;PQA=0;PQR=0;PRO=0;QA=1013;QR=6113;RO=153;RPL=0;RPP=57.2971;RPPR=335.246;RPR=25;RUN=1;SAF=25;SAP=57.2971;SAR=0;SRF=153;SRP=335.246;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:118:103,15:103:4131:15:609:-19.6264,0,-335.856 0/1:28:21,7:21:842:7:285:-17.5956,0,-65.7881 0/1:32:29,3:29:1140:3:119:-1.46154,0,-93.238 dDocent_Contig_12835 9 . A T 909.221 . AB=0.1;ABP=30.8051;AC=0;AF=0;AN=6;AO=2;CIGAR=3M1X1M;DP=90;DPB=81.4;DPRA=0;EPP=7.35324;EPPR=92.0407;GTI=0;LEN=1;MEANALT=4;MQM=60;MQMR=60;NS=3;NUMALT=4;ODDS=1.38778e-17;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=76;QR=1573;RO=41;RPL=0;RPP=7.35324;RPPR=92.0407;RPR=2;RUN=1;SAF=2;SAP=7.35324;SAR=0;SRF=41;SRP=92.0407;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|0:44:19,0,24,0,0:19:730:0,24,0,0:0,906,0,0:-68.5577,-74.2773,-134.208,0,-59.9596,-52.7348,-74.2773,-134.208,-59.9596,-134.208,-74.2773,-134.208,-59.9596,-134.208,-134.208 0|0:20:8,4,5,1,2:8:302:4,5,1,2:126,190,39,76:-13.1889,-5.48872,-29.0352,0,-14.6567,-23.265,-12.3885,-27.0327,-21.5622,-36.8488,-9.3601,-24.0063,-18.5345,-30.9152,-33.5205 0|0:26:14,0,6,6,0:14:541:0,6,6,0:0,229,229,0:-14.5738,-18.7882,-63.2258,0,-44.4384,-42.6322,-0.00123757,-44.4396,-25.6529,-42.6335,-18.7882,-63.2258,-44.4384,-44.4396,-63.2258 dDocent_Contig_12836 29 . T C 55.8875 . AB=0.272727;ABP=7.94546;AC=1;AF=0.166667;AN=6;AO=3;CIGAR=1X;DP=40;DPB=40;DPRA=0.758621;EPP=9.52472;EPPR=83.3548;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=115;QR=1346;RO=37;RPL=0;RPP=9.52472;RPPR=83.3548;RPR=3;RUN=1;SAF=3;SAP=9.52472;SAR=0;SRF=37;SRP=83.3548;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:14:14,0:14:513:0:0:0,-4.21442,-46.5093 0/1:11:8,3:8:297:3:115:-7.41266,0,-23.7728 0/0:15:15,0:15:536:0:0:0,-4.51545,-48.5724 dDocent_Contig_12839 23 . T C 118.012 . AB=0.185185;ABP=26.2531;AC=4;AF=0.666667;AN=6;AO=6;CIGAR=1X;DP=28;DPB=28;DPRA=0;EPP=16.0391;EPPR=50.7827;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=245;QR=834;RO=22;RPL=0;RPP=16.0391;RPPR=50.7827;RPR=6;RUN=1;SAF=6;SAP=16.0391;SAR=0;SRF=22;SRP=50.7827;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:20:16,4:16:604:4:164:-9.1293,0,-48.661 1/1:1:0,1:0:0:1:41:-4.09457,-0.30103,0 0/1:7:6,1:6:230:1:40:-1.88847,0,-18.9573 dDocent_Contig_12840 8 . T C 417.229 . AB=0.875;ABP=12.7819;AC=1;AF=0.166667;AN=6;AO=7;CIGAR=1X2M8D1M;DP=58;DPB=53.3333;DPRA=0;EPP=18.2106;EPPR=83.3548;GTI=0;LEN=1;MEANALT=2;MQM=38.7143;MQMR=60;NS=3;NUMALT=3;ODDS=0;PAIRED=0;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=263;QR=1458;RO=37;RPL=0;RPP=18.2106;RPPR=83.3548;RPR=7;RUN=1;SAF=7;SAP=18.2106;SAR=0;SRF=37;SRP=83.3548;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|0:39:28,0,2,9:28:1112:0,2,9:0,80,366:-21.7751,-30.204,-121.747,-23.8241,-115.365,-114.763,0,-91.5558,-85.1732,-88.8466 1|0:8:0,7,1,0:0:0:7,1,0:263,40,0:-22.8973,-3.57965,-1.47244,-19.6998,0,-19.3987,-22.8973,-3.57965,-19.6998,-22.8973 0|0:11:9,0,1,0:9:346:0,1,0:0,40,0:-0.567188,-3.27646,-31.7451,0,-28.5517,-28.2507,-3.27646,-31.7451,-28.5517,-31.7451 dDocent_Contig_12841 23 . T A 2434.72 . AB=0.632;ABP=21.9282;AC=3;AF=0.5;AN=6;AO=79;CIGAR=1X6M;DP=125;DPB=125;DPRA=0;EPP=174.557;EPPR=68.1545;GTI=0;LEN=1;MEANALT=3;MQM=60;MQMR=60;NS=3;NUMALT=3;ODDS=0;PAIRED=0.987342;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=3133;QR=1171;RO=30;RPL=0;RPP=174.557;RPPR=68.1545;RPR=79;RUN=1;SAF=79;SAP=174.557;SAR=0;SRF=30;SRP=68.1545;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|1:77:16,0,10,51:16:633:0,10,51:0,396,2025:-161.888,-166.704,-218.799,-134.113,-186.208,-183.197,0,-52.0949,-19.5032,-36.7423 0|1:20:5,2,1,12:5:187:2,1,12:79,30,481:-38.155,-33.2287,-47.9305,-37.2682,-46.1391,-52.2696,0,-8.87825,-12.9286,-11.705 0|1:28:9,0,0,16:9:351:0,0,16:0,0,627:-48.9524,-51.6617,-80.5184,-51.6617,-80.5184,-80.5184,0,-28.946,-28.946,-24.1295 dDocent_Contig_12843 111 . G T 426.256 . AB=0.363636;ABP=11.8936;AC=1;AF=0.166667;AN=6;AO=20;CIGAR=1X;DP=109;DPB=109;DPRA=2.03704;EPP=46.4397;EPPR=196.271;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=671;QR=3024;RO=89;RPL=0;RPP=46.4397;RPPR=196.271;RPR=20;RUN=1;SAF=0;SAP=46.4397;SAR=20;SRF=0;SRP=196.271;SRR=89;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:55:35,20:35:1193:20:671:-44.1484,0,-91.1162 0/0:9:9,0:9:310:0:0:0,-2.70927,-28.2341 0/0:45:45,0:45:1521:0:0:0,-13.5463,-137.178 dDocent_Contig_12845 10 . T C 4819.46 . AB=0.805405;ABP=152.889;AC=3;AF=0.5;AN=6;AO=149;CIGAR=1X3M;DP=185;DPB=185;DPRA=0;EPP=326.56;EPPR=72.4974;GTI=0;LEN=1;MEANALT=1.33333;MQM=60;MQMR=60;NS=3;NUMALT=2;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=6020;QR=1271;RO=32;RPL=0;RPP=326.56;RPPR=72.4974;RPR=149;RUN=1;SAF=149;SAP=326.56;SAR=0;SRF=32;SRP=72.4974;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|1:105:10,0,95:10:396:0,95:0,3842:-314.152,-317.163,-349.754,0,-32.9873,-4.3894 0|1:27:13,0,14:13:512:0,14:0,568:-43.3344,-47.2478,-89.3627,0,-42.514,-38.2996 0|1:53:9,4,40:9:363:4,40:156,1610:-129.981,-119.87,-148.589,0,-17.114,-17.8907 dDocent_Contig_12846 36 . T C 110.397 . AB=0.242424;ABP=22.0271;AC=3;AF=0.5;AN=6;AO=8;CIGAR=1X;DP=33;DPB=33;DPRA=0;EPP=20.3821;EPPR=57.2971;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=282;QR=993;RO=25;RPL=0;RPP=20.3821;RPPR=57.2971;RPR=8;RUN=1;SAF=8;SAP=20.3821;SAR=0;SRF=25;SRP=57.2971;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:19:15,4:15:595:4:129:-6.20073,0,-48.1694 0/1:9:6,3:6:241:3:112:-7.73673,0,-19.3574 0/1:5:4,1:4:157:1:41:-2.58942,0,-13.002 dDocent_Contig_12847 53 . T G 134.398 . AB=0.269231;ABP=15.0369;AC=3;AF=0.5;AN=6;AO=7;CIGAR=1X;DP=26;DPB=26;DPRA=0;EPP=18.2106;EPPR=44.2683;GTI=0;LEN=1;MEANALT=1;MQM=55.7143;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=0.714286;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=270;QR=743;RO=19;RPL=7;RPP=18.2106;RPPR=44.2683;RPR=0;RUN=1;SAF=7;SAP=18.2106;SAR=0;SRF=19;SRP=44.2683;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:11:8,3:8:315:3:119:-7.78368,0,-25.4046 0/1:4:1,3:1:38:3:111:-9.1396,0,-2.59315 0/1:11:10,1:10:390:1:40:-0.476244,0,-32.1443 dDocent_Contig_12848 11 . T C 211.431 . AB=0.333333;ABP=9.52472;AC=2;AF=0.333333;AN=6;AO=11;CIGAR=1X3M2X;DP=59;DPB=59;DPRA=0;EPP=26.8965;EPPR=105.07;GTI=0;LEN=1;MEANALT=1.33333;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=436;QR=1856;RO=47;RPL=0;RPP=26.8965;RPPR=105.07;RPR=11;RUN=1;SAF=11;SAP=26.8965;SAR=0;SRF=47;SRP=105.07;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|0:32:29,2:29:1147:2:80:0,-2.13971,-95.9275 0|1:6:3,3:3:120:3:116:-9.01152,0,-9.38172 0|1:21:15,6:15:589:6:240:-15.6544,0,-47.029 dDocent_Contig_12849 92 . T C 57.7474 . AB=0.25;ABP=11.6962;AC=1;AF=0.166667;AN=6;AO=4;CIGAR=1X;DP=32;DPB=32;DPRA=2;EPP=11.6962;EPPR=63.8115;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=131;QR=836;RO=28;RPL=4;RPP=11.6962;RPPR=63.8115;RPR=0;RUN=1;SAF=4;SAP=11.6962;SAR=0;SRF=28;SRP=63.8115;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:16:12,4:12:364:4:131:-7.29753,0,-28.2409 0/0:4:4,0:4:118:0:0:0,-1.20412,-10.9135 0/0:12:12,0:12:354:0:0:0,-3.61236,-32.1496 dDocent_Contig_12851 9 . A G 214.441 . AB=0.4;ABP=4.74748;AC=1;AF=0.166667;AN=6;AO=9;CIGAR=1X2M1X;DP=53;DPB=53;DPRA=1.90909;EPP=22.5536;EPPR=98.5551;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=358;QR=1730;RO=44;RPL=0;RPP=22.5536;RPPR=98.5551;RPR=9;RUN=1;SAF=9;SAP=22.5536;SAR=0;SRF=44;SRP=98.5551;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|1:20:12,8:12:477:8:318:-22.967,0,-37.2622 0|0:11:11,0:11:428:0:0:0,-3.31133,-38.8723 0|0:22:21,1:21:825:1:40:0,-2.62698,-70.5744 dDocent_Contig_12852 38 . G A 1647.66 . AB=0.342541;ABP=41.9888;AC=3;AF=0.5;AN=6;AO=62;CIGAR=1X;DP=181;DPB=181;DPRA=0;EPP=137.642;EPPR=261.416;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=2487;QR=4767;RO=119;RPL=0;RPP=137.642;RPPR=261.416;RPR=62;RUN=1;SAF=62;SAP=137.642;SAR=0;SRF=119;SRP=261.416;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:116:70,46:70:2781:46:1844:-131.248,0,-215.478 0/1:30:23,7:23:933:7:282:-16.7223,0,-75.2408 0/1:35:26,9:26:1053:9:361:-22.318,0,-84.5216 dDocent_Contig_12853 74 . G T 523.964 . AB=0.478261;ABP=3.19912;AC=3;AF=0.5;AN=6;AO=22;CIGAR=1X;DP=46;DPB=46;DPRA=0;EPP=50.7827;EPPR=55.1256;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=767;QR=841;RO=24;RPL=22;RPP=50.7827;RPPR=55.1256;RPR=0;RUN=1;SAF=22;SAP=50.7827;SAR=0;SRF=24;SRP=55.1256;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:21:13,8:13:464:8:282:-19.4,0,-35.7762 0/1:11:1,10:1:36:10:344:-27.9807,0,-0.286945 0/1:14:10,4:10:341:4:141:-8.82268,0,-26.806 dDocent_Contig_12855 145 . C G 195.138 . AB=0.235294;ABP=13.3567;AC=3;AF=0.5;AN=6;AO=7;CIGAR=1X;DP=34;DPB=34;DPRA=0.714286;EPP=18.2106;EPPR=61.6401;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=50.5556;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=0.703704;PAO=0;PQA=0;PQR=0;PRO=0;QA=282;QR=1077;RO=27;RPL=0;RPP=18.2106;RPPR=61.6401;RPR=7;RUN=1;SAF=0;SAP=18.2106;SAR=7;SRF=0;SRP=61.6401;SRR=27;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:17:13,4:13:523:4:162:-9.84924,0,-36.533 1/1:3:0,3:0:0:3:120:-11.1873,-0.90309,0 0/0:14:14,0:14:554:0:0:0,-4.21442,-46.8054 dDocent_Contig_12856 17 . A G 269.729 . AB=0.228571;ABP=25.4075;AC=4;AF=0.666667;AN=6;AO=11;CIGAR=1X;DP=38;DPB=38;DPRA=0;EPP=26.8965;EPPR=61.6401;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=59.037;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=0.962963;PAO=0;PQA=0;PQR=0;PRO=0;QA=443;QR=1000;RO=27;RPL=0;RPP=26.8965;RPPR=61.6401;RPR=11;RUN=1;SAF=11;SAP=26.8965;SAR=0;SRF=27;SRP=61.6401;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:17:13,4:13:464:4:160:-9.66592,0,-36.9633 0/1:18:14,4:14:536:4:160:-9.36489,0,-42.4627 1/1:3:0,3:0:0:3:123:-11.4648,-0.90309,0 dDocent_Contig_12857 107 . N G 153.595 . AB=0;ABP=0;AC=2;AF=1;AN=2;AO=5;CIGAR=1X;DP=5;DPB=5;DPRA=0;EPP=13.8677;EPPR=0;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=0;NS=1;NUMALT=1;ODDS=8.07091;PAIRED=1;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=167;QR=0;RO=0;RPL=0;RPP=13.8677;RPPR=0;RPR=5;RUN=1;SAF=0;SAP=13.8677;SAR=5;SRF=0;SRP=0;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 1/1:5:0,5:0:0:5:167:-15.3593,-1.50515,0 ./.:.:.:.:.:.:.:. ./.:.:.:.:.:.:.:. dDocent_Contig_12858 44 . T G 131.374 . AB=0.25;ABP=16.0391;AC=1;AF=0.166667;AN=6;AO=6;CIGAR=1X;DP=68;DPB=68;DPRA=1.09091;EPP=16.0391;EPPR=129.096;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=59.3065;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=0.983871;PAO=0;PQA=0;PQR=0;PRO=0;QA=239;QR=2429;RO=62;RPL=0;RPP=16.0391;RPPR=137.642;RPR=6;RUN=1;SAF=6;SAP=16.0391;SAR=0;SRF=61;SRP=129.096;SRR=1;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:24:18,6:18:723:6:239:-14.6602,0,-58.1718 0/0:16:16,0:16:600:0:0:0,-4.81648,-52.332 0/0:28:28,0:28:1106:0:0:0,-8.42884,-99.8323 dDocent_Contig_12860 1 . N T 441.782 . AB=0;ABP=0;AC=6;AF=1;AN=6;AO=14;CIGAR=1X;DP=14;DPB=14;DPRA=0;EPP=33.4109;EPPR=0;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=0;NS=3;NUMALT=1;ODDS=0;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=473;QR=0;RO=0;RPL=0;RPP=33.4109;RPPR=0;RPR=14;RUN=1;SAF=0;SAP=33.4109;SAR=14;SRF=0;SRP=0;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 1/1:7:0,7:0:0:7:231:-21.1129,-2.10721,0 1/1:2:0,2:0:0:2:69:-6.55266,-0.60206,0 1/1:5:0,5:0:0:5:173:-15.9102,-1.50515,0 dDocent_Contig_12861 16 . T C 285.019 . AB=0.307692;ABP=15.538;AC=2;AF=0.333333;AN=6;AO=12;CIGAR=1X;DP=43;DPB=43;DPRA=4.875;EPP=29.068;EPPR=70.3259;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=478;QR=1259;RO=31;RPL=0;RPP=29.068;RPPR=70.3259;RPR=12;RUN=1;SAF=12;SAP=29.068;SAR=0;SRF=31;SRP=70.3259;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:25:19,6:19:771:6:238:-14.2652,0,-62.1844 0/0:4:4,0:4:162:0:0:0,-1.20412,-14.967 0/1:14:8,6:8:326:6:240:-17.7594,0,-25.4954 dDocent_Contig_12862 23 . G C 549.031 . AB=0.666667;ABP=8.07707;AC=3;AF=0.5;AN=6;AO=17;CIGAR=1X;DP=30;DPB=30;DPRA=2;EPP=39.9253;EPPR=31.2394;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=689;QR=526;RO=13;RPL=0;RPP=39.9253;RPPR=31.2394;RPR=17;RUN=1;SAF=17;SAP=39.9253;SAR=0;SRF=13;SRP=31.2394;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:21:7,14:7:285:14:566:-44.9609,0,-19.7026 1/1:3:0,3:0:0:3:123:-11.4648,-0.90309,0 0/0:6:6,0:6:241:0:0:0,-1.80618,-22.0663 dDocent_Contig_12863 16 . C T 33.9712 . AB=0.105769;ABP=143.404;AC=0;AF=0;AN=6;AO=16;CIGAR=2M1X4M1X;DP=295;DPB=294.625;DPRA=0;EPP=37.7539;EPPR=426.447;GTI=0;LEN=1;MEANALT=13.5;MQM=18.6875;MQMR=59.6564;NS=3;NUMALT=6;ODDS=0;PAIRED=0;PAIREDR=0.994872;PAO=0;PQA=0;PQR=0;PRO=0;QA=299;QR=7645;RO=195;RPL=0;RPP=37.7539;RPPR=426.447;RPR=16;RUN=1;SAF=16;SAP=37.7539;SAR=0;SRF=195;SRP=426.447;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|0:163:116,10,3,0,5,2,1:116:4536:10,3,0,5,2,1:215,122,0,85,81,40:0,-21.1729,-390.996,-24.8707,-383.962,-396.831,-34.9195,-394.006,-397.734,-407.778,-30.1315,-389.205,-392.932,-402.975,-401.47,-28.2367,-387.327,-391.054,-401.098,-396.296,-400.496,-31.6228,-390.711,-394.439,-404.483,-399.68,-397.803,-404.181 0|0:28:20,0,2,4,0,0,0:20:791:0,2,4,0,0,0:0,81,157,0,0,0:-0.695625,-6.71622,-71.8709,0,-65.1887,-64.5867,-1.56621,-66.6382,-59.9584,-65.4341,-6.71622,-71.8709,-65.1887,-66.6382,-71.8709,-6.71622,-71.8709,-65.1887,-66.6382,-71.8709,-71.8709,-6.71622,-71.8709,-65.1887,-66.6382,-71.8709,-71.8709,-71.8709 0|0:104:59,3,7,0,11,6,6:59:2318:3,7,0,11,6,6:66,279,0,214,102,232:-5.21352,-18.7538,-208.546,0,-186.49,-188.606,-22.9743,-209.449,-190.713,-213.672,-10.0136,-196.47,-177.734,-200.692,-197.38,-17.2259,-203.69,-184.955,-207.913,-194.936,-206.107,-3.90401,-190.391,-171.655,-194.614,-181.635,-188.855,-192.807 dDocent_Contig_12866 107 . N T 66.4848 . AB=0;ABP=0;AC=2;AF=1;AN=2;AO=2;CIGAR=1X;DP=2;DPB=2;DPRA=0;EPP=7.35324;EPPR=0;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=0;NS=1;NUMALT=1;ODDS=5.99146;PAIRED=1;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=70;QR=0;RO=0;RPL=0;RPP=7.35324;RPPR=0;RPR=2;RUN=1;SAF=0;SAP=7.35324;SAR=2;SRF=0;SRP=0;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 1/1:2:0,2:0:0:2:70:-6.6474,-0.60206,0 ./.:.:.:.:.:.:.:. ./.:.:.:.:.:.:.:. dDocent_Contig_12867 42 . A G 368.245 . AB=0.157895;ABP=157.528;AC=2;AF=0.333333;AN=6;AO=37;CIGAR=1X;DP=352;DPB=352;DPRA=0;EPP=83.3548;EPPR=687.024;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=1475;QR=12383;RO=315;RPL=0;RPP=83.3548;RPPR=687.024;RPR=37;RUN=1;SAF=37;SAP=83.3548;SAR=0;SRF=315;SRP=687.024;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:200:187,13:187:7368:13:526:0,-12.5184,-615.081 0/1:60:49,11:49:1887:11:425:-20.5353,0,-151.98 0/1:92:79,13:79:3128:13:524:-19.8121,0,-253.898 dDocent_Contig_12868 78 . C T 372.379 . AB=0.148148;ABP=32.0437;AC=4;AF=0.666667;AN=6;AO=4;CIGAR=2X3M;DP=58;DPB=58;DPRA=6.75;EPP=11.6962;EPPR=81.1833;GTI=0;LEN=1;MEANALT=3;MQM=60;MQMR=60;NS=3;NUMALT=2;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=136;QR=1206;RO=36;RPL=4;RPP=11.6962;RPPR=81.1833;RPR=0;RUN=1;SAF=4;SAP=11.6962;SAR=0;SRF=36;SRP=81.1833;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|1:27:16,6,4:16:540:6,4:205,136:-11.8155,0,-41.9535,-5.60221,-32.7277,-48.1585 1|1:4:0,4,0:0:0:4,0:152,0:-14.0468,-1.20412,0,-14.0468,-1.20412,-14.0468 0|1:27:20,7,0:20:666:7,0:252,0:-14.8983,0,-52.1264,-20.9189,-54.2336,-74.7997 dDocent_Contig_12869 19 . C G 996.654 . AB=0.478261;ABP=3.19912;AC=4;AF=0.666667;AN=6;AO=33;CIGAR=1X;DP=58;DPB=58;DPRA=0;EPP=74.6689;EPPR=57.2971;GTI=0;LEN=1;MEANALT=1;MQM=59.8788;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=1312;QR=990;RO=25;RPL=0;RPP=74.6689;RPPR=57.2971;RPR=33;RUN=1;SAF=33;SAP=74.6689;SAR=0;SRF=25;SRP=57.2971;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:13:8,5:8:327:5:200:-14.4659,0,-25.8867 0/1:33:16,17:16:642:17:673:-50.9654,0,-48.1798 1/1:12:1,11:1:21:11:439:-37.7568,-1.51241,0 dDocent_Contig_12870 75 . T C 275.981 . AB=0.4;ABP=3.87889;AC=3;AF=0.5;AN=6;AO=11;CIGAR=1X;DP=29;DPB=29;DPRA=0.708333;EPP=26.8965;EPPR=42.0968;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=350;QR=673;RO=18;RPL=11;RPP=26.8965;RPPR=42.0968;RPR=0;RUN=1;SAF=11;SAP=26.8965;SAR=0;SRF=18;SRP=42.0968;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 1/1:7:0,7:0:0:7:214:-19.5558,-2.10721,0 0/1:10:6,4:6:232:4:136:-9.56517,0,-18.2386 0/0:12:12,0:12:441:0:0:0,-3.61236,-40.035 dDocent_Contig_12873 107 . N G 66.4848 . AB=0;ABP=0;AC=2;AF=1;AN=2;AO=2;CIGAR=1X;DP=2;DPB=2;DPRA=0;EPP=7.35324;EPPR=0;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=0;NS=1;NUMALT=1;ODDS=5.99146;PAIRED=1;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=70;QR=0;RO=0;RPL=0;RPP=7.35324;RPPR=0;RPR=2;RUN=1;SAF=0;SAP=7.35324;SAR=2;SRF=0;SRP=0;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL ./.:.:.:.:.:.:.:. 1/1:2:0,2:0:0:2:70:-6.6474,-0.60206,0 ./.:.:.:.:.:.:.:. dDocent_Contig_12875 20 . C G 1131.5 . AB=0.615385;ABP=10.5269;AC=3;AF=0.5;AN=6;AO=40;CIGAR=1M1X;DP=65;DPB=65;DPRA=0;EPP=89.8692;EPPR=57.2971;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=58.6;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=0.96;PAO=0;PQA=0;PQR=0;PRO=0;QA=1525;QR=993;RO=25;RPL=0;RPP=89.8692;RPPR=57.2971;RPR=40;RUN=1;SAF=40;SAP=89.8692;SAR=0;SRF=25;SRP=57.2971;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|1:36:13,23:13:517:23:896:-70.1079,0,-36.0362 0|1:16:8,8:8:319:8:284:-21.0737,0,-24.2605 0|1:13:4,9:4:157:9:345:-27.491,0,-9.28812 dDocent_Contig_12876 165 . G A 184.37 . AB=0.857143;ABP=10.7656;AC=1;AF=0.166667;AN=6;AO=6;CIGAR=1X;DP=19;DPB=19;DPRA=1.16667;EPP=16.0391;EPPR=31.2394;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=242;QR=520;RO=13;RPL=6;RPP=16.0391;RPPR=31.2394;RPR=0;RUN=1;SAF=0;SAP=16.0391;SAR=6;SRF=0;SRP=31.2394;SRR=13;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:6:6,0:6:245:0:0:0,-1.80618,-22.4295 0/1:7:1,6:1:40:6:242:-20.0497,0,-1.88847 0/0:6:6,0:6:235:0:0:0,-1.80618,-21.5164 dDocent_Contig_12877 107 . N A 65.5375 . AB=0;ABP=0;AC=2;AF=1;AN=2;AO=2;CIGAR=1X;DP=2;DPB=2;DPRA=0;EPP=7.35324;EPPR=0;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=0;NS=1;NUMALT=1;ODDS=5.99146;PAIRED=1;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=69;QR=0;RO=0;RPL=0;RPP=7.35324;RPPR=0;RPR=2;RUN=1;SAF=0;SAP=7.35324;SAR=2;SRF=0;SRP=0;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 1/1:2:0,2:0:0:2:69:-6.55266,-0.60206,0 ./.:.:.:.:.:.:.:. ./.:.:.:.:.:.:.:. dDocent_Contig_12878 36 . A T 116.479 . AB=0.225806;ABP=23.254;AC=2;AF=0.333333;AN=6;AO=7;CIGAR=1X;DP=49;DPB=49;DPRA=0.861111;EPP=18.2106;EPPR=94.2121;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=0.928571;PAO=0;PQA=0;PQR=0;PRO=0;QA=264;QR=1654;RO=42;RPL=0;RPP=18.2106;RPPR=94.2121;RPR=7;RUN=1;SAF=7;SAP=18.2106;SAR=0;SRF=42;SRP=94.2121;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:26:21,5:21:827:5:184:-9.08413,0,-66.9133 0/1:5:3,2:3:123:2:80:-6.08664,0,-9.95964 0/0:18:18,0:18:704:0:0:0,-5.41854,-63.684 dDocent_Contig_12879 119 . C T 1942.92 . AB=0.744681;ABP=51.8915;AC=4;AF=0.666667;AN=6;AO=74;CIGAR=1X;DP=98;DPB=98;DPRA=0;EPP=163.699;EPPR=55.1256;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=2502;QR=808;RO=24;RPL=0;RPP=163.699;RPPR=55.1256;RPR=74;RUN=1;SAF=0;SAP=163.699;SAR=74;SRF=0;SRP=55.1256;SRR=24;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:72:18,54:18:601:54:1812:-141.672,0,-32.7302 1/1:4:0,4:0:0:4:138:-12.76,-1.20412,0 0/1:22:6,16:6:207:16:552:-43.3825,0,-12.3454 dDocent_Contig_12880 29 . G A 346.433 . AB=0.358974;ABP=9.74743;AC=3;AF=0.5;AN=6;AO=14;CIGAR=1X;DP=39;DPB=39;DPRA=0;EPP=33.4109;EPPR=57.2971;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=564;QR=971;RO=25;RPL=0;RPP=33.4109;RPPR=57.2971;RPR=14;RUN=1;SAF=14;SAP=33.4109;SAR=0;SRF=25;SRP=57.2971;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:20:11,9:11:432:9:364:-27.1044,0,-33.2091 0/1:8:5,3:5:173:3:119:-8.68677,0,-13.4888 0/1:11:9,2:9:366:2:81:-4.3744,0,-29.9938 dDocent_Contig_12881 9 . A G 30.7812 . AB=0.129032;ABP=40.0654;AC=1;AF=0.166667;AN=6;AO=4;CIGAR=1X;DP=104;DPB=104;DPRA=0.849315;EPP=11.6962;EPPR=220.158;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=154;QR=3820;RO=100;RPL=0;RPP=11.6962;RPPR=220.158;RPR=4;RUN=1;SAF=4;SAP=11.6962;SAR=0;SRF=100;SRP=220.158;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:46:46,0:46:1758:0:0:0,-13.8474,-158.476 0/0:27:27,0:27:1041:0:0:0,-8.12781,-93.9983 0/1:31:27,4:27:1021:4:154:-4.90166,0,-82.8649 dDocent_Contig_12882 30 . A C 458.955 . AB=0.125;ABP=51.8684;AC=0;AF=0;AN=6;AO=5;CIGAR=1M4I2M4D1M;DP=57;DPB=57;DPRA=0;EPP=13.8677;EPPR=61.6401;GTI=0;LEN=1;MEANALT=3;MQM=39;MQMR=60;NS=3;NUMALT=3;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=199;QR=1058;RO=27;RPL=0;RPP=13.8677;RPPR=61.6401;RPR=5;RUN=1;SAF=5;SAP=13.8677;SAR=0;SRF=27;SRP=61.6401;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|0:40:16,5,6,13:16:623:5,6,13:199,245,515:-37.5707,-27.5347,-77.2269,-22.1665,-58.5138,-71.5635,0,-36.3486,-30.9819,-47.2895 0|0:3:1,0,0,2:1:39:0,0,2:0,0,81:-6.78264,-7.08367,-10.2846,-7.08367,-10.2846,-10.2846,0,-3.59553,-3.59553,-2.99347 0|0:14:10,0,3,1:10:396:0,3,1:0,122,41:-7.05047,-10.0608,-42.6465,0,-32.5812,-31.6782,-6.67587,-39.2616,-29.1959,-38.9605 dDocent_Contig_12884 107 . N T 54.1547 . AB=0;ABP=0;AC=2;AF=1;AN=2;AO=2;CIGAR=1X;DP=2;DPB=2;DPRA=0;EPP=7.35324;EPPR=0;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=0;NS=1;NUMALT=1;ODDS=5.99146;PAIRED=1;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=57;QR=0;RO=0;RPL=0;RPP=7.35324;RPPR=0;RPR=2;RUN=1;SAF=0;SAP=7.35324;SAR=2;SRF=0;SRP=0;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL ./.:.:.:.:.:.:.:. 1/1:2:0,2:0:0:2:57:-5.41438,-0.60206,0 ./.:.:.:.:.:.:.:. dDocent_Contig_12886 25 . C G 35.2811 . AB=0.15;ABP=24.2907;AC=1;AF=0.166667;AN=6;AO=3;CIGAR=1X;DP=85;DPB=85;DPRA=0.615385;EPP=9.52472;EPPR=172.491;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=0.804878;PAO=0;PQA=0;PQR=0;PRO=0;QA=122;QR=3275;RO=82;RPL=0;RPP=9.52472;RPPR=181.071;RPR=3;RUN=1;SAF=3;SAP=9.52472;SAR=0;SRF=81;SRP=172.491;SRR=1;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:32:32,0:32:1257:0:0:0,-9.63296,-113.394 0/1:20:17,3:17:686:3:122:-5.35189,0,-56.0481 0/0:33:33,0:33:1332:0:0:0,-9.93399,-120.138 dDocent_Contig_12887 163 . C T 66.8833 . AB=0.222222;ABP=15.074;AC=2;AF=0.333333;AN=6;AO=4;CIGAR=1X;DP=24;DPB=24;DPRA=1.5;EPP=11.6962;EPPR=46.4397;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=161;QR=801;RO=20;RPL=4;RPP=11.6962;RPPR=46.4397;RPR=0;RUN=1;SAF=0;SAP=11.6962;SAR=4;SRF=0;SRP=46.4397;SRR=20;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:6:6,0:6:244:0:0:0,-1.80618,-22.3386 0/1:9:6,3:6:235:3:120:-8.47842,0,-18.8089 0/1:9:8,1:8:322:1:41:-1.3853,0,-26.6385 dDocent_Contig_12888 22 . A C 638.558 . AB=0.245763;ABP=69.2586;AC=3;AF=0.5;AN=6;AO=29;CIGAR=1X;DP=118;DPB=118;DPRA=0;EPP=65.983;EPPR=189.757;GTI=0;LEN=1;MEANALT=1.33333;MQM=58.1724;MQMR=59.7791;NS=3;NUMALT=1;ODDS=6.93889e-18;PAIRED=0.862069;PAIREDR=0.988372;PAO=0;PQA=0;PQR=0;PRO=0;QA=1151;QR=3428;RO=86;RPL=0;RPP=65.983;RPPR=189.757;RPR=29;RUN=1;SAF=29;SAP=65.983;SAR=0;SRF=86;SRP=189.757;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:76:52,21:52:2071:21:841:-53.4335,0,-163.995 0/1:19:16,3:16:641:3:114:-4.85472,0,-52.3044 0/1:23:18,5:18:716:5:196:-11.0902,0,-57.8409 dDocent_Contig_12889 32 . C T 51.7694 . AB=0.133333;ABP=55.5599;AC=1;AF=0.166667;AN=6;AO=6;CIGAR=1X;DP=66;DPB=66;DPRA=4.28571;EPP=16.0391;EPPR=133.299;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=221;QR=2383;RO=60;RPL=0;RPP=16.0391;RPPR=133.299;RPR=6;RUN=1;SAF=6;SAP=16.0391;SAR=0;SRF=60;SRP=133.299;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:45:39,6:39:1565:6:221:-6.69977,0,-127.543 0/0:5:5,0:5:190:0:0:0,-1.50515,-17.4628 0/0:16:16,0:16:628:0:0:0,-4.81648,-56.8483 dDocent_Contig_12890 58 . T C 373.836 . AB=0.25;ABP=20.3821;AC=2;AF=0.333334;AN=6;AO=8;CIGAR=1X6M;DP=61;DPB=62.8571;DPRA=2.13333;EPP=20.3821;EPPR=89.8692;GTI=0;LEN=1;MEANALT=2;MQM=60;MQMR=60;NS=3;NUMALT=2;ODDS=6.93889e-18;PAIRED=0;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=324;QR=1524;RO=40;RPL=8;RPP=20.3821;RPPR=89.8692;RPR=0;RUN=1;SAF=8;SAP=20.3821;SAR=0;SRF=40;SRP=89.8692;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|1:32:19,5,8:19:719:5,8:196,324:-21.0048,-10.6112,-68.0139,0,-42.7947,-56.5074 0|1:14:7,7,0:7:262:7,0:264,0:-19.9013,0,-19.7197,-22.0085,-21.8269,-43.4601 0|0:15:14,1,0:14:543:1,0:39,0:0,-0.618885,-45.3158,-4.21442,-45.6168,-48.8228 dDocent_Contig_12891 8 . T G 796.872 . AB=0.46875;ABP=3.55317;AC=3;AF=0.5;AN=6;AO=30;CIGAR=1X;DP=64;DPB=64;DPRA=0;EPP=68.1545;EPPR=76.8404;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=1149;QR=1308;RO=34;RPL=0;RPP=68.1545;RPPR=76.8404;RPR=30;RUN=1;SAF=30;SAP=68.1545;SAR=0;SRF=34;SRP=76.8404;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:33:20,13:20:772:13:498:-35.2331,0,-59.874 0/1:12:3,9:3:109:9:343:-27.6148,0,-6.55521 0/1:19:11,8:11:427:8:308:-22.3622,0,-33.0654 dDocent_Contig_12892 62 . C A 258.055 . AB=0.387097;ABP=6.44263;AC=3;AF=0.5;AN=6;AO=12;CIGAR=1X;DP=31;DPB=31;DPRA=0;EPP=29.068;EPPR=44.2683;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=440;QR=753;RO=19;RPL=12;RPP=29.068;RPPR=44.2683;RPR=0;RUN=1;SAF=12;SAP=29.068;SAR=0;SRF=19;SRP=44.2683;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:14:11,3:11:435:3:115:-6.51031,0,-35.2901 0/1:7:2,5:2:80:5:195:-15.8147,0,-5.48436 0/1:10:6,4:6:238:4:130:-9.00337,0,-18.7836 dDocent_Contig_12893 12 . T C 328.581 . AB=0.235294;ABP=44.396;AC=3;AF=0.5;AN=6;AO=16;CIGAR=1X;DP=68;DPB=68;DPRA=0;EPP=37.7539;EPPR=115.927;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=641;QR=2058;RO=52;RPL=0;RPP=37.7539;RPPR=115.927;RPR=16;RUN=1;SAF=16;SAP=37.7539;SAR=0;SRF=52;SRP=115.927;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:29:19,10:19:763:10:407:-28.2607,0,-60.2631 0/1:16:14,2:14:535:2:77:-2.49172,0,-43.6748 0/1:23:19,4:19:760:4:157:-7.5842,0,-61.7999 dDocent_Contig_12894 82 . A T 582.728 . AB=0.355263;ABP=16.8392;AC=3;AF=0.5;AN=6;AO=27;CIGAR=1X;DP=76;DPB=76;DPRA=0;EPP=61.6401;EPPR=109.412;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=952;QR=1757;RO=49;RPL=27;RPP=61.6401;RPPR=109.412;RPR=0;RUN=1;SAF=27;SAP=61.6401;SAR=0;SRF=49;SRP=109.412;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:57:35,22:35:1268:22:786:-53.9036,0,-97.2627 0/1:8:5,3:5:179:3:94:-6.3624,0,-14.0517 0/1:11:9,2:9:310:2:72:-3.52539,0,-24.9219 dDocent_Contig_12895 18 . G A 2461.3 . AB=0.0526316;ABP=102.098;AC=4;AF=0.666667;AN=6;AO=3;CIGAR=1X1M;DP=98;DPB=98;DPRA=4.38462;EPP=9.52472;EPPR=42.0968;GTI=0;LEN=1;MEANALT=2;MQM=60;MQMR=60;NS=3;NUMALT=2;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=123;QR=711;RO=18;RPL=0;RPP=9.52472;RPPR=42.0968;RPR=3;RUN=1;SAF=3;SAP=9.52472;SAR=0;SRF=18;SRP=42.0968;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|1:57:12,42,3:12:478:42,3:1681,123:-134.854,0,-26.7095,-128.314,-29.1982,-166.772 1|1:13:0,13,0:0:0:13,0:494,0:-44.7962,-3.91339,0,-44.7962,-3.91339,-44.7962 0|1:28:6,22,0:6:233:22,0:868,0:-70.0029,0,-12.9104,-71.8091,-19.5331,-90.9528 dDocent_Contig_12896 130 . G A 791.471 . AB=0.162602;ABP=246.251;AC=3;AF=0.5;AN=6;AO=40;CIGAR=1X5M1X4M;DP=246;DPB=246;DPRA=0;EPP=89.8692;EPPR=92.0407;GTI=0;LEN=1;MEANALT=8.66667;MQM=34.475;MQMR=56.6585;NS=3;NUMALT=7;ODDS=0;PAIRED=0;PAIREDR=0.439024;PAO=0;PQA=0;PQR=0;PRO=0;QA=1314;QR=1528;RO=41;RPL=0;RPP=89.8692;RPPR=92.0407;RPR=40;RUN=1;SAF=0;SAP=89.8692;SAR=40;SRF=0;SRP=92.0407;SRR=41;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|1:131:18,58,2,8,16,0,7,4:18:673:58,2,8,16,0,7,4:527,58,73,478,0,212,135:-29.0921,-18.5854,-56.1062,-30.4319,-69.4893,-84.805,-32.3142,-71.3874,-83.2119,-84.8816,0,-39.0726,-50.9039,-52.7871,-50.1659,-34.5106,-73.566,-85.4071,-87.2898,-54.9823,-89.485,-19.4241,-58.4865,-70.3235,-72.2065,-39.8972,-74.4016,-72.2944,-24.3738,-63.4321,-75.272,-77.1548,-44.8462,-79.3501,-64.2663,-78.146 0|1:49:12,15,3,0,10,0,0,7:12:451:15,3,0,10,0,0,7:111,81,0,323,0,0,198:-20.0119,-21.723,-52.68,-18.0398,-51.6222,-52.6226,-23.6242,-57.1954,-53.5257,-59.1055,0,-33.616,-29.9256,-35.5075,-32.4972,-23.6242,-57.1954,-53.5257,-59.1055,-35.5075,-59.1055,-23.6242,-57.1954,-53.5257,-59.1055,-35.5075,-59.1055,-59.1055,-9.38284,-42.9832,-39.2972,-44.8778,-21.2732,-44.8778,-44.8778,-42.7706 0|1:66:11,16,0,3,14,7,1,11:11:404:16,0,3,14,7,1,11:195,0,24,513,265,32,363:-35.566,-29.5697,-57.7932,-38.8773,-62.6097,-71.9201,-38.3405,-62.0784,-71.3828,-70.4797,0,-23.7541,-33.0584,-32.522,-28.844,-31.1098,-54.8548,-64.1539,-63.6182,-25.2912,-62.0467,-36.5678,-60.3015,-69.6112,-69.074,-30.7488,-61.8451,-69.3102,-12.3222,-36.072,-45.3742,-44.8381,-6.50134,-37.6086,-43.0649,-42.0629 dDocent_Contig_12897 23 . C T 80.1081 . AB=0.125;ABP=81.1833;AC=1;AF=0.166667;AN=6;AO=8;CIGAR=1X3M1X;DP=102;DPB=102;DPRA=3.36842;EPP=20.3821;EPPR=202.786;GTI=0;LEN=1;MEANALT=2;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=317;QR=3630;RO=92;RPL=0;RPP=20.3821;RPPR=202.786;RPR=8;RUN=1;SAF=8;SAP=20.3821;SAR=0;SRF=92;SRP=202.786;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|1:64:55,8:55:2181:8:317:-9.53292,0,-177.116 0|0:1:1,0:1:35:0:0:0,-0.30103,-3.49863 0|0:37:36,0:36:1414:0:0:0,-10.8371,-127.124 dDocent_Contig_12898 18 . T C 140.353 . AB=0.375;ABP=5.18177;AC=2;AF=0.333333;AN=6;AO=6;CIGAR=1X;DP=31;DPB=31;DPRA=0.533333;EPP=16.0391;EPPR=57.2971;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=0.96;PAO=0;PQA=0;PQR=0;PRO=0;QA=240;QR=1010;RO=25;RPL=0;RPP=16.0391;RPPR=57.2971;RPR=6;RUN=1;SAF=6;SAP=16.0391;SAR=0;SRF=25;SRP=57.2971;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:8:5,3:5:203:3:117:-8.50159,0,-16.2448 0/0:15:15,0:15:604:0:0:0,-4.51545,-54.6971 0/1:8:5,3:5:203:3:123:-9.05655,0,-16.2446 dDocent_Contig_12900 38 . A G 43.567 . AB=0.4;ABP=3.44459;AC=1;AF=0.166667;AN=6;AO=2;CIGAR=1X;DP=29;DPB=29;DPRA=0.416667;EPP=7.35324;EPPR=61.6401;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=81;QR=1086;RO=27;RPL=0;RPP=7.35324;RPPR=61.6401;RPR=2;RUN=1;SAF=2;SAP=7.35324;SAR=0;SRF=27;SRP=61.6401;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:15:15,0:15:603:0:0:0,-4.51545,-54.6091 0/1:5:3,2:3:119:2:81:-6.18058,0,-9.58986 0/0:9:9,0:9:364:0:0:0,-2.70927,-33.1244 dDocent_Contig_12901 69 . A C 157.932 . AB=0.258065;ABP=18.771;AC=2;AF=0.333333;AN=6;AO=8;CIGAR=1X;DP=36;DPB=36;DPRA=3.1;EPP=20.3821;EPPR=63.8115;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=0.25;PAIREDR=0.821429;PAO=0;PQA=0;PQR=0;PRO=0;QA=310;QR=1044;RO=28;RPL=8;RPP=20.3821;RPPR=63.8115;RPR=0;RUN=1;SAF=8;SAP=20.3821;SAR=0;SRF=28;SRP=63.8115;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:10:7,3:7:271:3:117:-7.90008,0,-21.7442 0/1:21:16,5:16:592:5:193:-11.4159,0,-47.287 0/0:5:5,0:5:181:0:0:0,-1.50515,-16.6424 dDocent_Contig_12902 106 . N C 66.4848 . AB=0;ABP=0;AC=2;AF=1;AN=2;AO=2;CIGAR=2X;DP=2;DPB=2;DPRA=0;EPP=7.35324;EPPR=0;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=0;NS=1;NUMALT=1;ODDS=5.99146;PAIRED=1;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=70;QR=0;RO=0;RPL=0;RPP=7.35324;RPPR=0;RPR=2;RUN=1;SAF=0;SAP=7.35324;SAR=2;SRF=0;SRP=0;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL .:.:.:.:.:.:.:. .:.:.:.:.:.:.:. 1|1:2:0,2:0:0:2:70:-6.6474,-0.60206,0 dDocent_Contig_12903 61 . C T 170.63 . AB=0.333333;ABP=8.07707;AC=1;AF=0.166667;AN=6;AO=8;CIGAR=1X;DP=52;DPB=52;DPRA=6;EPP=20.3821;EPPR=98.5551;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=315;QR=1736;RO=44;RPL=8;RPP=20.3821;RPPR=98.5551;RPR=0;RUN=1;SAF=8;SAP=20.3821;SAR=0;SRF=44;SRP=98.5551;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:27:26,1:26:1036:1:39:0,-4.23125,-89.6363 0/0:4:4,0:4:158:0:0:0,-1.20412,-14.6 0/1:21:14,7:14:542:7:276:-18.8868,0,-42.7896 dDocent_Contig_12904 161 . A T 167.548 . AB=0.164179;ABP=68.6406;AC=2;AF=0.333333;AN=6;AO=11;CIGAR=1X;DP=71;DPB=71;DPRA=8.375;EPP=26.8965;EPPR=133.299;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=441;QR=2417;RO=60;RPL=11;RPP=26.8965;RPPR=133.299;RPR=0;RUN=1;SAF=0;SAP=26.8965;SAR=11;SRF=0;SRP=133.299;SRR=60;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:44:39,5:39:1576:5:202:-5.31676,0,-128.827 0/0:4:4,0:4:157:0:0:0,-1.20412,-14.5072 0/1:23:17,6:17:684:6:239:-14.9607,0,-54.9656 dDocent_Contig_12906 17 . G T 178.476 . AB=0.35;ABP=6.91895;AC=1;AF=0.166667;AN=6;AO=7;CIGAR=1X;DP=42;DPB=42;DPRA=1.81818;EPP=18.2106;EPPR=79.0118;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=278;QR=1408;RO=35;RPL=0;RPP=18.2106;RPPR=79.0118;RPR=7;RUN=1;SAF=7;SAP=18.2106;SAR=0;SRF=35;SRP=79.0118;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:20:13,7:13:526:7:278:-19.3698,0,-41.6662 0/0:1:1,0:1:40:0:0:0,-0.30103,-3.99568 0/0:21:21,0:21:842:0:0:0,-6.32163,-76.0908 dDocent_Contig_12907 38 . A G 3229.37 . AB=0.780488;ABP=87.0622;AC=4;AF=0.666667;AN=6;AO=101;CIGAR=1X;DP=128;DPB=128;DPRA=0;EPP=222.329;EPPR=61.6401;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=4030;QR=1069;RO=27;RPL=0;RPP=222.329;RPPR=61.6401;RPR=101;RUN=1;SAF=101;SAP=222.329;SAR=0;SRF=27;SRP=61.6401;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:75:14,61:14:552:61:2419:-195.289,0,-27.4454 1/1:5:0,5:0:0:5:199:-18.2886,-1.50515,0 0/1:48:13,35:13:517:35:1412:-112.882,0,-32.4273 dDocent_Contig_12908 32 . T A 144.236 . AB=0.352941;ABP=6.20364;AC=1;AF=0.166667;AN=6;AO=7;CIGAR=1X;DP=48;DPB=48;DPRA=1.9;EPP=18.2106;EPPR=92.0407;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=59.561;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=0.512195;PAO=0;PQA=0;PQR=0;PRO=0;QA=271;QR=1618;RO=41;RPL=0;RPP=18.2106;RPPR=92.0407;RPR=7;RUN=1;SAF=7;SAP=18.2106;SAR=0;SRF=41;SRP=92.0407;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:17:11,6:11:438:6:230:-15.9465,0,-34.657 0/0:10:10,0:10:386:0:0:0,-3.0103,-35.0799 0/0:21:20,1:20:794:1:41:0,-2.22706,-67.6712 dDocent_Contig_12909 71 . G A 896.427 . AB=0.392157;ABP=13.3141;AC=3;AF=0.5;AN=6;AO=40;CIGAR=1X2M8I4M;DP=102;DPB=148.857;DPRA=0;EPP=89.8692;EPPR=135.47;GTI=0;LEN=1;MEANALT=1.33333;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=1388;QR=2138;RO=61;RPL=40;RPP=89.8692;RPPR=135.47;RPR=0;RUN=1;SAF=40;SAP=89.8692;SAR=0;SRF=61;SRP=135.47;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|1:60:36,23:36:1258:23:811:-55.2196,0,-95.4311 0|1:12:9,3:9:326:3:101:-5.81137,0,-26.0747 0|1:30:16,14:16:554:14:476:-34.1345,0,-41.1567 dDocent_Contig_12910 132 . T C 182.591 . AB=0.269231;ABP=15.0369;AC=1;AF=0.166667;AN=6;AO=7;CIGAR=3X;DP=35;DPB=35;DPRA=0;EPP=18.2106;EPPR=33.4109;GTI=0;LEN=1;MEANALT=3;MQM=17.4286;MQMR=60;NS=3;NUMALT=3;ODDS=0;PAIRED=0;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=242;QR=447;RO=14;RPL=0;RPP=18.2106;RPPR=33.4109;RPR=7;RUN=1;SAF=0;SAP=18.2106;SAR=7;SRF=0;SRP=33.4109;SRR=14;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|0:20:8,5,1,6:8:263:5,1,6:173,35,199:-13.757,-11.9187,-31.6656,-13.3083,-30.3217,-34.2996,0,-17.0878,-18.4928,-19.5414 0|0:9:5,0,2,1:5:150:0,2,1:0,69,35:-4.09808,-5.60323,-17.5677,0,-11.9551,-11.3531,-2.75467,-14.7163,-9.10146,-14.4153 1|0:6:1,2,1,2:1:34:2,1,2:69,17,58:-5.91573,-1.85365,-4.03206,-5.01033,-3.43932,-7.47875,-1.58023,0,-3.1659,-3.76109 dDocent_Contig_12911 24 . T C 338.343 . 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AB=0.153846;ABP=30.0702;AC=1;AF=0.166667;AN=6;AO=4;CIGAR=1X3M1X;DP=46;DPB=46;DPRA=2.6;EPP=11.6962;EPPR=92.0407;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=162;QR=1601;RO=41;RPL=0;RPP=11.6962;RPPR=92.0407;RPR=4;RUN=1;SAF=4;SAP=11.6962;SAR=0;SRF=41;SRP=92.0407;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|1:26:22,4:22:860:4:162:-7.13997,0,-69.889 0|0:10:10,0:10:387:0:0:0,-3.0103,-35.1812 0|0:10:9,0:9:354:0:0:0,-2.70927,-32.1 dDocent_Contig_12922 55 . T C 2696.32 . AB=0.38247;ABP=33.1254;AC=3;AF=0.5;AN=6;AO=96;CIGAR=1X2M1X;DP=251;DPB=251;DPRA=0;EPP=211.472;EPPR=274.444;GTI=0;LEN=1;MEANALT=2.33333;MQM=60;MQMR=60;NS=3;NUMALT=2;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=3796;QR=4884;RO=125;RPL=96;RPP=211.472;RPPR=274.444;RPR=0;RUN=1;SAF=96;SAP=211.472;SAR=0;SRF=125;SRP=274.444;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|1:155:80,46,27:80:3143:46,27:1811,1041:-124.897,0,-244.647,-63.5215,-173.035,-313.883 0|1:23:13,9,1:13:497:9,1:354,40:-25.1996,0,-38.0488,-25.8173,-37.4617,-66.2842 0|1:73:32,41,0:32:1244:41,0:1631,0:-125.058,0,-90.2629,-134.691,-102.605,-236.904 dDocent_Contig_12923 21 . G T 277.325 . AB=0.186047;ABP=76.6384;AC=1;AF=0.166667;AN=6;AO=16;CIGAR=1X;DP=129;DPB=129;DPRA=4;EPP=37.7539;EPPR=248.387;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=609;QR=4474;RO=113;RPL=0;RPP=37.7539;RPPR=248.387;RPR=16;RUN=1;SAF=16;SAP=37.7539;SAR=0;SRF=113;SRP=248.387;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:86:70,16:70:2767:16:609:-29.2553,0,-223.26 0/0:18:18,0:18:705:0:0:0,-5.41854,-63.7773 0/0:25:25,0:25:1002:0:0:0,-7.52575,-90.4788 dDocent_Contig_12924 35 . T A 998.039 . AB=0.406593;ABP=9.90651;AC=3;AF=0.5;AN=6;AO=37;CIGAR=1M1D2M1X;DP=91;DPB=83.6;DPRA=0;EPP=83.3548;EPPR=118.098;GTI=0;LEN=1;MEANALT=1.33333;MQM=60;MQMR=59.7736;NS=3;NUMALT=1;ODDS=0;PAIRED=0;PAIREDR=0.943396;PAO=0;PQA=0;PQR=0;PRO=0;QA=1464;QR=2093;RO=53;RPL=0;RPP=83.3548;RPPR=118.098;RPR=37;RUN=1;SAF=37;SAP=83.3548;SAR=0;SRF=53;SRP=118.098;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|1:51:26,25:26:1024:25:987:-73.7792,0,-77.1072 0|1:10:8,2:8:313:2:79:-4.48733,0,-25.4684 0|1:30:19,10:19:756:10:398:-27.0598,0,-59.2456 dDocent_Contig_12925 107 . N T 128.875 . AB=0;ABP=0;AC=4;AF=1;AN=4;AO=4;CIGAR=1X;DP=4;DPB=4;DPRA=0;EPP=11.6962;EPPR=0;GTI=0;LEN=1;MEANALT=1;MQM=54.5;MQMR=0;NS=2;NUMALT=1;ODDS=0;PAIRED=0.75;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=134;QR=0;RO=0;RPL=0;RPP=11.6962;RPPR=0;RPR=4;RUN=1;SAF=0;SAP=11.6962;SAR=4;SRF=0;SRP=0;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 1/1:1:0,1:0:0:1:34:-3.25451,-0.30103,0 ./.:.:.:.:.:.:.:. 1/1:3:0,3:0:0:3:100:-9.33053,-0.90309,0 dDocent_Contig_12926 105 . N T 311.666 . AB=0;ABP=0;AC=6;AF=1;AN=6;AO=10;CIGAR=3X;DP=10;DPB=10;DPRA=0;EPP=24.725;EPPR=0;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=0;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=330;QR=0;RO=0;RPL=0;RPP=24.725;RPPR=0;RPR=10;RUN=1;SAF=0;SAP=24.725;SAR=10;SRF=0;SRP=0;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 1|1:3:0,3:0:0:3:98:-9.14441,-0.90309,0 1|1:1:0,1:0:0:1:34:-3.39891,-0.30103,0 1|1:6:0,6:0:0:6:198:-18.1452,-1.80618,0 dDocent_Contig_12927 14 . A G 349.562 . AB=0.168;ABP=122.684;AC=2;AF=0.333333;AN=6;AO=21;CIGAR=1X;DP=134;DPB=134;DPRA=6.94444;EPP=48.6112;EPPR=248.387;GTI=0;LEN=1;MEANALT=1;MQM=59.0476;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=838;QR=4531;RO=113;RPL=0;RPP=48.6112;RPPR=248.387;RPR=21;RUN=1;SAF=21;SAP=48.6112;SAR=0;SRF=113;SRP=248.387;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:80:67,13:67:2677:13:520:-23.0403,0,-216.962 0/0:9:9,0:9:365:0:0:0,-2.70927,-33.2149 0/1:45:37,8:37:1489:8:318:-15.4387,0,-120.706 dDocent_Contig_12928 56 . A T 177.254 . AB=0.3125;ABP=12.7819;AC=2;AF=0.333333;AN=6;AO=11;CIGAR=1X;DP=53;DPB=53;DPRA=0;EPP=26.8965;EPPR=94.2121;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=375;QR=1636;RO=42;RPL=11;RPP=26.8965;RPPR=94.2121;RPR=0;RUN=1;SAF=11;SAP=26.8965;SAR=0;SRF=42;SRP=94.2121;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:23:17,6:17:671:6:212:-12.4972,0,-53.7958 0/0:21:20,1:20:767:1:39:0,-2.42507,-65.4476 0/1:9:5,4:5:198:4:124:-8.75103,0,-15.4881 dDocent_Contig_12929 52 . G T 72.5682 . 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AB=0.390244;ABP=11.5903;AC=3;AF=0.5;AN=6;AO=32;CIGAR=1X;DP=82;DPB=82;DPRA=0;EPP=72.4974;EPPR=111.584;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=1265;QR=1936;RO=50;RPL=32;RPP=72.4974;RPPR=111.584;RPR=0;RUN=1;SAF=32;SAP=72.4974;SAR=0;SRF=50;SRP=111.584;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:58:33,25:33:1276:25:993:-72.1989,0,-97.6498 0/1:6:4,2:4:144:2:82:-5.9735,0,-11.5068 0/1:18:13,5:13:516:5:190:-12.0436,0,-41.3688 dDocent_Contig_12932 55 . T G 2367.88 . 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AB=0.333333;ABP=7.35324;AC=2;AF=0.333333;AN=6;AO=6;CIGAR=1X;DP=25;DPB=25;DPRA=1.28571;EPP=16.0391;EPPR=44.2683;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=168;QR=641;RO=19;RPL=0;RPP=16.0391;RPPR=44.2683;RPR=6;RUN=1;SAF=0;SAP=16.0391;SAR=6;SRF=0;SRP=44.2683;SRR=19;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:10:7,3:7:242:3:93:-5.6673,0,-19.1065 0/1:8:5,3:5:165:3:75:-4.5892,0,-12.7662 0/0:7:7,0:7:234:0:0:0,-2.10721,-21.3848 dDocent_Contig_12937 10 . T C 166.752 . 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AB=0.804196;ABP=117.946;AC=4;AF=0.666667;AN=6;AO=126;CIGAR=1X;DP=154;DPB=154;DPRA=0;EPP=276.616;EPPR=63.8115;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=4996;QR=1118;RO=28;RPL=0;RPP=276.616;RPPR=63.8115;RPR=126;RUN=1;SAF=126;SAP=276.616;SAR=0;SRF=28;SRP=63.8115;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:110:20,90:20:805:90:3597:-290.638,0,-39.6528 1/1:11:0,11:0:0:11:419:-38.047,-3.31133,0 0/1:33:8,25:8:313:25:980:-78.5575,0,-18.596 dDocent_Contig_12939 8 . T C 1278.28 . AB=0.0471698;ABP=191.805;AC=0;AF=0;AN=6;AO=5;CIGAR=1X2M1X4M;DP=156;DPB=156.625;DPRA=0;EPP=13.8677;EPPR=196.271;GTI=0;LEN=1;MEANALT=3.5;MQM=60;MQMR=60;NS=3;NUMALT=3;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=194;QR=3484;RO=89;RPL=0;RPP=13.8677;RPPR=196.271;RPR=5;RUN=1;SAF=5;SAP=13.8677;SAR=0;SRF=89;SRP=196.271;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|0:90:56,2,7,24:56:2193:2,7,24:78,270,969:-63.0345,-73.4811,-253.194,-57.7235,-231.625,-235.929,0,-173.914,-158.154,-173.101 0|0:16:3,3,2,8:3:118:3,2,8:116,80,325:-25.9107,-17.2898,-26.0909,-20.2237,-20.4043,-29.3269,0,-0.182704,-3.11469,-7.2991 0|0:50:30,0,4,16:30:1173:0,4,16:0,158,647:-44.3197,-53.3506,-149.784,-40.3505,-136.782,-135.578,0,-96.437,-83.4346,-91.6205 dDocent_Contig_12940 52 . C T 207.699 . AB=0.473684;ABP=3.12459;AC=2;AF=0.5;AN=4;AO=9;CIGAR=1X;DP=19;DPB=19;DPRA=0;EPP=22.5536;EPPR=24.725;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=2;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=328;QR=393;RO=10;RPL=9;RPP=22.5536;RPPR=24.725;RPR=0;RUN=1;SAF=9;SAP=22.5536;SAR=0;SRF=10;SRP=24.725;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:12:5,7:5:199:7:267:-20.7788,0,-14.6757 ./.:.:.:.:.:.:.:. 0/1:7:5,2:5:194:2:61:-3.68562,0,-15.7246 dDocent_Contig_12942 55 . G T 608.96 . AB=0.247863;ABP=67.6162;AC=3;AF=0.5;AN=6;AO=29;CIGAR=1X;DP=117;DPB=117;DPRA=0;EPP=65.983;EPPR=194.1;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=1118;QR=3516;RO=88;RPL=29;RPP=65.983;RPPR=194.1;RPR=0;RUN=1;SAF=29;SAP=65.983;SAR=0;SRF=88;SRP=194.1;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:81:65,16:65:2592:16:637:-33.2718,0,-209.03 0/1:15:8,7:8:316:7:272:-20.3241,0,-24.2898 0/1:21:15,6:15:608:6:209:-12.8229,0,-48.7367 dDocent_Contig_12944 10 . T C 301.687 . AB=0.282051;ABP=19.1015;AC=3;AF=0.5;AN=6;AO=11;CIGAR=2X1M;DP=45;DPB=45;DPRA=0;EPP=26.8965;EPPR=68.1545;GTI=0;LEN=1;MEANALT=1.5;MQM=60;MQMR=60;NS=3;NUMALT=2;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=445;QR=1153;RO=30;RPL=0;RPP=26.8965;RPPR=68.1545;RPR=11;RUN=1;SAF=11;SAP=26.8965;SAR=0;SRF=30;SRP=68.1545;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|1:30:18,2,10:18:697:2,10:82,405:-27.9729,-26.6225,-83.2596,0,-50.4597,-54.2199 0|1:6:4,2,0:4:150:2,0:79,0:-5.69145,0,-12.0588,-6.89557,-12.6608,-19.1684 0|1:9:8,0,1:8:306:0,1:0,40:-1.28641,-3.69465,-28.7886,0,-25.4916,-25.1906 dDocent_Contig_12945 11 . A C 2297.39 . AB=0.0809717;ABP=379.712;AC=0;AF=0;AN=6;AO=20;CIGAR=2M2X2M1I2M1X3M;DP=247;DPB=262.5;DPRA=0;EPP=46.4397;EPPR=133.299;GTI=0;LEN=1;MEANALT=9.33333;MQM=60;MQMR=60;NS=3;NUMALT=8;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=775;QR=2300;RO=60;RPL=0;RPP=46.4397;RPPR=133.299;RPR=20;RUN=1;SAF=20;SAP=46.4397;SAR=0;SRF=60;SRP=133.299;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|0:121:31,25,0,2,7,44,4,1,0:31:1194:25,0,2,7,44,4,1,0:973,0,77,261,1703,156,40,0:-130.557,-59.9207,-150.429,-139.889,-157.955,-237.923,-133.567,-151.633,-231.601,-230.999,-118.528,-136.594,-216.561,-210.239,-214.454,0,-18.0656,-98.0347,-91.7123,-76.6735,-84.7894,-127.065,-145.132,-225.099,-218.777,-203.738,-85.211,-223.895,-136.594,-154.66,-234.628,-228.305,-213.266,-94.7394,-221.804,-234.327,-139.889,-157.955,-237.923,-231.601,-216.561,-98.0347,-225.099,-234.628,-237.923 0|0:42:7,0,0,6,0,13,5,3,4:7:268:0,0,6,0,13,5,3,4:0,0,236,0,498,193,108,161:-38.7597,-40.867,-62.8603,-40.867,-62.8603,-62.8603,-21.4514,-43.4452,-43.4452,-41.639,-40.867,-62.8603,-62.8603,-43.4452,-62.8603,0,-21.9933,-21.9933,-2.57722,-21.9933,-18.0799,-25.0166,-47.01,-47.01,-27.5945,-47.01,-6.14279,-45.5049,-32.0575,-54.0505,-54.0505,-34.6355,-54.0505,-13.1844,-38.2004,-53.1474,-27.5952,-49.589,-49.589,-30.1733,-49.589,-8.72094,-33.7383,-40.7792,-48.3849 0|0:84:22,8,6,5,0,23,11,4,0:22:838:8,6,5,0,23,11,4,0:305,239,199,0,884,426,149,0:-65.9451,-47.7289,-114.052,-52.8849,-96.7775,-119.811,-56.1803,-100.073,-105.229,-123.407,-72.5677,-116.46,-121.617,-124.912,-141.299,0,-43.8923,-49.0483,-52.3438,-68.7314,-61.8077,-37.5726,-81.465,-86.6214,-89.9168,-106.304,-33.7359,-102.993,-60.371,-104.263,-109.42,-112.715,-129.102,-56.5346,-94.1072,-127.898,-72.5677,-116.46,-121.617,-124.912,-141.299,-68.7314,-106.304,-129.102,-141.299 dDocent_Contig_12946 11 . A G 73.5208 . AB=0.114583;ABP=126.875;AC=1;AF=0.166667;AN=6;AO=11;CIGAR=1X;DP=170;DPB=170;DPRA=2.59459;EPP=26.8965;EPPR=348.274;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=0.981132;PAO=0;PQA=0;PQR=0;PRO=0;QA=416;QR=6332;RO=159;RPL=0;RPP=26.8965;RPPR=348.274;RPR=11;RUN=1;SAF=11;SAP=26.8965;SAR=0;SRF=159;SRP=348.274;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:96:85,11:85:3402:11:416:-8.87496,0,-277.321 0/0:19:19,0:19:749:0:0:0,-5.71957,-67.7356 0/0:55:55,0:55:2181:0:0:0,-16.5566,-196.466 dDocent_Contig_12949 7 . A G 121.553 . AB=0.222222;ABP=33.1696;AC=3;AF=0.5;AN=6;AO=10;CIGAR=1X;DP=45;DPB=45;DPRA=0;EPP=24.725;EPPR=79.0118;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=3.46945e-18;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=335;QR=1359;RO=35;RPL=0;RPP=24.725;RPPR=79.0118;RPR=10;RUN=1;SAF=10;SAP=24.725;SAR=0;SRF=35;SRP=79.0118;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:20:17,3:17:661:3:88:-2.18632,0,-53.8066 0/1:7:5,2:5:191:2:74:-4.91867,0,-15.4509 0/1:18:13,5:13:507:5:173:-10.4877,0,-40.5609 dDocent_Contig_12952 106 . N G 419.28 . AB=0;ABP=0;AC=6;AF=1;AN=6;AO=25;CIGAR=2X;DP=25;DPB=25;DPRA=0;EPP=57.2971;EPPR=0;GTI=0;LEN=1;MEANALT=1;MQM=19.44;MQMR=0;NS=3;NUMALT=1;ODDS=0;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=841;QR=0;RO=0;RPL=0;RPP=57.2971;RPPR=0;RPR=25;RUN=1;SAF=0;SAP=57.2971;SAR=25;SRF=0;SRP=0;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 1|1:10:0,10:0:0:10:346:-16.6807,-3.0103,0 1|1:11:0,11:0:0:11:366:-17.5171,-3.31133,0 1|1:4:0,4:0:0:4:129:-7.12805,-1.20412,0 dDocent_Contig_12954 168 . C T 171.628 . AB=0.171429;ABP=68.6508;AC=2;AF=0.333333;AN=6;AO=12;CIGAR=1X;DP=75;DPB=75;DPRA=7;EPP=29.068;EPPR=139.813;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=456;QR=2498;RO=63;RPL=12;RPP=29.068;RPPR=139.813;RPR=0;RUN=1;SAF=0;SAP=29.068;SAR=12;SRF=0;SRP=139.813;SRR=63;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:64:56,8:56:2214:8:307:-8.71965,0,-180.162 0/1:6:2,4:2:80:4:149:-11.9659,0,-5.78561 0/0:5:5,0:5:204:0:0:0,-1.50515,-18.744 dDocent_Contig_12956 17 . T C 930.119 . AB=0.321429;ABP=34.0313;AC=2;AF=0.333333;AN=6;AO=38;CIGAR=1X;DP=135;DPB=135;DPRA=0;EPP=85.5263;EPPR=213.643;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=6.93889e-18;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=1511;QR=3875;RO=97;RPL=0;RPP=85.5263;RPPR=213.643;RPR=38;RUN=1;SAF=38;SAP=85.5263;SAR=0;SRF=97;SRP=213.643;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:84:53,31:53:2110:31:1237:-86.3096,0,-164.787 0/1:28:23,5:23:923:5:203:-10.2242,0,-74.946 0/0:23:21,2:21:842:2:71:0,-0.184263,-69.3544 dDocent_Contig_12957 9 . A G 685.194 . AB=0.0606061;ABP=113.69;AC=0;AF=0;AN=6;AO=4;CIGAR=1X1M1X;DP=133;DPB=133;DPRA=1.46667;EPP=11.6962;EPPR=183.243;GTI=0;LEN=1;MEANALT=3;MQM=60;MQMR=58.8313;NS=3;NUMALT=3;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=135;QR=3148;RO=83;RPL=0;RPP=11.6962;RPPR=183.243;RPR=4;RUN=1;SAF=4;SAP=11.6962;SAR=0;SRF=83;SRP=183.243;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|0:45:38,0,5,2:38:1431:0,5,2:0,123,78:0,-11.4391,-128.743,-2.25205,-119.464,-117.959,-4.98462,-122.33,-113.052,-121.728 0|0:66:30,4,29,3:30:1138:4,29,3:135,907,85:-62.382,-60.4706,-152.525,0,-82.3411,-84.5465,-64.7676,-147.084,-86.6361,-157.12 0|0:22:15,0,2,5:15:579:0,2,5:0,41,176:-9.66025,-14.1757,-61.7683,-11.6716,-59.2337,-58.6316,0,-47.7178,-45.1897,-46.2126 dDocent_Contig_12958 91 . T A 614.977 . AB=0.4;ABP=9.09042;AC=1;AF=0.166667;AN=6;AO=28;CIGAR=1X;DP=104;DPB=104;DPRA=4.11765;EPP=63.8115;EPPR=168.042;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=931;QR=2635;RO=76;RPL=28;RPP=63.8115;RPPR=168.042;RPR=0;RUN=1;SAF=28;SAP=63.8115;SAR=0;SRF=76;SRP=168.042;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:70:42,28:42:1466:28:931:-63.0198,0,-111.163 0/0:1:1,0:1:36:0:0:0,-0.30103,-3.59827 0/0:33:33,0:33:1133:0:0:0,-9.93399,-102.273 dDocent_Contig_12959 68 . C G 52.9175 . AB=0.375;ABP=5.18177;AC=1;AF=0.166667;AN=6;AO=7;CIGAR=1X1M1X;DP=32;DPB=32;DPRA=7.5;EPP=18.2106;EPPR=57.2971;GTI=0;LEN=1;MEANALT=1;MQM=27.7143;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=0.285714;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=270;QR=983;RO=25;RPL=7;RPP=18.2106;RPPR=57.2971;RPR=0;RUN=1;SAF=7;SAP=18.2106;SAR=0;SRF=25;SRP=57.2971;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|1:16:10,6:10:399:6:232:-6.81424,0,-31.4534 0|0:2:2,0:2:80:0:0:0,-0.60206,-7.59179 0|0:14:13,1:13:504:1:38:0,-1.64093,-43.1354 dDocent_Contig_12960 10 . T C 1190.57 . AB=0.4;ABP=12.1305;AC=3;AF=0.5;AN=6;AO=42;CIGAR=4M1X1M;DP=105;DPB=94.3333;DPRA=0;EPP=94.2121;EPPR=100.727;GTI=0;LEN=1;MEANALT=2.66667;MQM=59.6667;MQMR=60;NS=3;NUMALT=2;ODDS=0;PAIRED=0.97619;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=1676;QR=1736;RO=45;RPL=0;RPP=94.2121;RPPR=100.727;RPR=42;RUN=1;SAF=42;SAP=94.2121;SAR=0;SRF=45;SRP=100.727;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|1:57:34,8,14:34:1312:8,14:292,553:-35.2952,-23.9689,-129.302,0,-86.2118,-103.57 0|1:17:6,2,9:6:232:2,9:74,364:-28.2333,-24.0001,-42.4474,0,-13.0278,-16.3599 0|1:31:5,6,19:5:192:6,19:222,759:-61.0513,-55.6991,-69.6512,0,-9.03991,-10.1206 dDocent_Contig_12961 30 . C T 92.3042 . AB=0.285714;ABP=8.59409;AC=1;AF=0.166667;AN=6;AO=4;CIGAR=1X;DP=21;DPB=21;DPRA=4;EPP=11.6962;EPPR=39.9253;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=162;QR=680;RO=17;RPL=0;RPP=11.6962;RPPR=39.9253;RPR=4;RUN=1;SAF=4;SAP=11.6962;SAR=0;SRF=17;SRP=39.9253;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:14:10,4:10:405:4:162:-10.7525,0,-32.5956 0/0:6:6,0:6:235:0:0:0,-1.80618,-21.5204 0/0:1:1,0:1:40:0:0:0,-0.30103,-3.99568 dDocent_Contig_12962 107 . N G 91.0625 . AB=0;ABP=0;AC=4;AF=1;AN=4;AO=3;CIGAR=1X;DP=3;DPB=3;DPRA=0;EPP=9.52472;EPPR=0;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=0;NS=2;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=91;QR=0;RO=0;RPL=0;RPP=9.52472;RPPR=0;RPR=3;RUN=1;SAF=0;SAP=9.52472;SAR=3;SRF=0;SRP=0;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 1/1:2:0,2:0:0:2:59:-5.60414,-0.60206,0 ./.:.:.:.:.:.:.:. 1/1:1:0,1:0:0:1:32:-3.19931,-0.30103,0 dDocent_Contig_12963 58 . T A 1871.3 . AB=0.698413;ABP=24.5527;AC=4;AF=0.666667;AN=6;AO=61;CIGAR=1X;DP=81;DPB=81;DPRA=0;EPP=135.47;EPPR=46.4397;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=2363;QR=798;RO=20;RPL=61;RPP=135.47;RPPR=46.4397;RPR=0;RUN=1;SAF=61;SAP=135.47;SAR=0;SRF=20;SRP=46.4397;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:34:14,20:14:562:20:779:-60.1915,0,-40.6887 0/1:29:5,24:5:196:24:923:-74.6389,0,-9.28518 1/1:18:1,17:1:40:17:661:-55.8219,-1.42286,0 dDocent_Contig_12964 44 . T A 814.678 . AB=0.483871;ABP=3.15039;AC=3;AF=0.5;AN=6;AO=30;CIGAR=1X1M1X;DP=62;DPB=62;DPRA=0;EPP=68.1545;EPPR=72.4974;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=3.46945e-18;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=1162;QR=1252;RO=32;RPL=0;RPP=68.1545;RPPR=72.4974;RPR=30;RUN=1;SAF=30;SAP=68.1545;SAR=0;SRF=32;SRP=72.4974;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|1:35:15,20:15:583:20:774:-59.4466,0,-42.2671 0|1:4:2,2:2:82:2:80:-6.38767,0,-6.57556 0|1:23:15,8:15:587:8:308:-21.1563,0,-46.2459 dDocent_Contig_12965 15 . G C 1754.76 . AB=0.591837;ABP=10.1895;AC=3;AF=0.5;AN=6;AO=58;CIGAR=1X;DP=98;DPB=98;DPRA=0;EPP=128.956;EPPR=89.8692;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=6.93889e-18;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=2328;QR=1612;RO=40;RPL=0;RPP=128.956;RPPR=89.8692;RPR=58;RUN=1;SAF=58;SAP=128.956;SAR=0;SRF=40;SRP=89.8692;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:68:32,36:32:1289:36:1444:-109.736,0,-95.8018 0/1:4:1,3:1:41:3:123:-10.2607,0,-2.89045 0/1:26:7,19:7:282:19:761:-60.9838,0,-17.9247 dDocent_Contig_12966 10 . G T 662.393 . AB=0.295455;ABP=34.9902;AC=1;AF=0.166667;AN=6;AO=29;CIGAR=1X;DP=150;DPB=150;DPRA=2.76087;EPP=65.983;EPPR=265.758;GTI=0;LEN=1;MEANALT=1;MQM=59.931;MQMR=59.2893;NS=3;NUMALT=1;ODDS=0;PAIRED=0;PAIREDR=0.165289;PAO=0;PQA=0;PQR=0;PRO=0;QA=1163;QR=4858;RO=121;RPL=0;RPP=65.983;RPPR=265.758;RPR=29;RUN=1;SAF=29;SAP=65.983;SAR=0;SRF=121;SRP=265.758;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:88:62,26:62:2487:26:1044:-67.7618,0,-194.411 0/0:23:23,0:23:907:0:0:0,-6.92369,-81.9364 0/0:39:36,3:36:1464:3:119:0,-0.64685,-119.633 dDocent_Contig_12967 9 . A G 42.702 . AB=0.1875;ABP=16.582;AC=1;AF=0.166667;AN=6;AO=3;CIGAR=1X;DP=73;DPB=73;DPRA=0.561404;EPP=9.52472;EPPR=155.013;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=0.971429;PAO=0;PQA=0;PQR=0;PRO=0;QA=117;QR=2676;RO=70;RPL=0;RPP=9.52472;RPPR=155.013;RPR=3;RUN=1;SAF=3;SAP=9.52472;SAR=0;SRF=70;SRP=155.013;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:54:54,0:54:2066:0:0:0,-16.2556,-186.172 0/0:3:3,0:3:115:0:0:0,-0.90309,-10.7249 0/1:16:13,3:13:495:3:117:-6.0939,0,-40.0803 dDocent_Contig_12968 18 . T C 2231.25 . AB=0.769231;ABP=60.3038;AC=3;AF=0.5;AN=6;AO=70;CIGAR=1X;DP=91;DPB=91;DPRA=0;EPP=155.013;EPPR=48.6112;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=2835;QR=845;RO=21;RPL=0;RPP=155.013;RPPR=48.6112;RPR=70;RUN=1;SAF=70;SAP=155.013;SAR=0;SRF=21;SRP=48.6112;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:60:11,49:11:443:49:1988:-161.043,0,-22.1643 0/1:8:5,3:5:205:3:118:-8.59334,0,-16.4268 0/1:23:5,18:5:197:18:729:-59.0112,0,-11.1812 dDocent_Contig_12969 12 . T G 2132.72 . AB=0.503311;ABP=3.02468;AC=3;AF=0.5;AN=6;AO=76;CIGAR=1X;DP=151;DPB=151;DPRA=0;EPP=168.042;EPPR=165.871;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=2926;QR=2933;RO=75;RPL=0;RPP=168.042;RPPR=165.871;RPR=76;RUN=1;SAF=76;SAP=168.042;SAR=0;SRF=75;SRP=165.871;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:77:42,35:42:1647:35:1335:-97.2479,0,-125.284 0/1:31:18,13:18:688:13:507:-36.6413,0,-52.9146 0/1:43:15,28:15:598:28:1084:-84.9062,0,-41.2156 dDocent_Contig_12970 152 . A G 228.406 . AB=0.346154;ABP=8.35546;AC=1;AF=0.166667;AN=6;AO=9;CIGAR=1X;DP=43;DPB=43;DPRA=3.05882;EPP=22.5536;EPPR=76.8404;GTI=0;LEN=1;MEANALT=1;MQM=59.7778;MQMR=38.9706;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=0.588235;PAO=0;PQA=0;PQR=0;PRO=0;QA=357;QR=1354;RO=34;RPL=0;RPP=22.5536;RPPR=76.8404;RPR=9;RUN=1;SAF=0;SAP=22.5536;SAR=9;SRF=0;SRP=76.8404;SRR=34;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:8:8,0:8:304:0:0:0,-2.40824,-19.4474 0/0:9:9,0:9:358:0:0:0,-2.70927,-26.5727 0/1:26:17,9:17:692:9:357:-24.6645,0,-29.8125 dDocent_Contig_12971 26 . G C 39.6602 . AB=0.230769;ABP=11.1951;AC=1;AF=0.166667;AN=6;AO=3;CIGAR=1X;DP=29;DPB=29;DPRA=1.625;EPP=9.52472;EPPR=59.4686;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=0;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=104;QR=1036;RO=26;RPL=0;RPP=9.52472;RPPR=59.4686;RPR=3;RUN=1;SAF=0;SAP=9.52472;SAR=3;SRF=26;SRP=59.4686;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:13:13,0:13:521:0:0:0,-3.91339,-47.2358 0/1:13:10,3:10:402:3:104:-5.7897,0,-32.6265 0/0:3:3,0:3:113:0:0:0,-0.90309,-10.5384 dDocent_Contig_12973 8 . T C 2874.15 . AB=0.0625;ABP=162.614;AC=0;AF=0;AN=6;AO=6;CIGAR=1X2M1X1M;DP=168;DPB=168;DPRA=0;EPP=16.0391;EPPR=111.584;GTI=0;LEN=1;MEANALT=4;MQM=60;MQMR=60;NS=3;NUMALT=4;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=223;QR=1900;RO=50;RPL=0;RPP=16.0391;RPPR=111.584;RPR=6;RUN=1;SAF=6;SAP=16.0391;SAR=0;SRF=50;SRP=111.584;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|0:72:20,0,2,5,45:20:753:0,2,5,45:0,81,201,1779:-140.36,-146.381,-208.077,-139.701,-201.397,-200.795,-129.816,-191.512,-184.832,-190.007,0,-61.682,-55.0011,-45.114,-48.1357 0|0:38:19,4,1,0,14:19:722:4,1,0,14:152,40,0,545:-39.0659,-32.3228,-90.325,-41.4898,-88.2335,-100.397,-44.7855,-91.5291,-100.698,-103.993,0,-46.744,-55.9128,-59.2087,-54.9943 0|0:58:11,2,6,0,36:11:425:2,6,0,36:71,244,0,1420:-113.512,-111.041,-145.344,-96.6947,-125.818,-129.794,-116.823,-145.946,-131.6,-151.728,0,-29.123,-14.7704,-34.9031,-24.066 dDocent_Contig_12975 56 . G C 150.637 . 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AB=0.0446009;ABP=770.386;AC=0;AF=0;AN=6;AO=19;CIGAR=4M1X9M;DP=426;DPB=350.143;DPRA=0;EPP=44.2683;EPPR=52.9542;GTI=0;LEN=1;MEANALT=8.66667;MQM=60;MQMR=60;NS=3;NUMALT=3;ODDS=0;PAIRED=0;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=768;QR=900;RO=23;RPL=0;RPP=44.2683;RPPR=52.9542;RPR=19;RUN=1;SAF=19;SAP=44.2683;SAR=0;SRF=23;SRP=52.9542;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|0:245:17,177,11,10:17:665:177,11,10:6563,430,406:-520.998,0,-1.39544,-490.763,-19.3242,-542.127,-492.629,-21.1889,-511.952,-544.294 0|0:65:1,51,7,1:1:40:51,7,1:1812,273,41:-162.657,-19.1554,-7.09964,-140.514,0,-141.703,-159.573,-19.0656,-140.425,-162.568 0|0:116:5,83,9,8:5:195:83,9,8:3037,355,321:-255.465,-13.1821,-4.22634,-227.759,0,-241.08,-230.519,-2.7587,-217.338,-244.141 dDocent_Contig_12990 12 . T G 1033.31 . 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G A 10023.7 . AB=0.171093;ABP=2727.01;AC=1;AF=0.166667;AN=6;AO=496;CIGAR=1X1M1X;DP=2899;DPB=2901.67;DPRA=0;EPP=1080.06;EPPR=3674.97;GTI=0;LEN=1;MEANALT=14.6667;MQM=31.373;MQMR=59.8829;NS=3;NUMALT=2;ODDS=0;PAIRED=0.596774;PAIREDR=0.920757;PAO=0;PQA=0;PQR=0;PRO=0;QA=19736;QR=65959;RO=1691;RPL=0;RPP=1080.06;RPPR=3674.97;RPR=496;RUN=1;SAF=496;SAP=1080.06;SAR=0;SRF=1691;SRP=3674.97;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|0:1676:975,287,292:975:38097:287,292:11399,11567:-657.697,-294.029,-3339.31,0,-2474.53,-3043.82 0|1:444:268,85,46:268:10413:85,46:3389,1837:-80.1417,0,-829.983,-9.56391,-704.345,-851.35 0|0:779:448,124,125:448:17449:124,125:4948,4929:-270.054,-116.701,-1513.19,0,-1145.63,-1396.23 dDocent_Contig_12993 21 . A T 223.436 . AB=0;ABP=0;AC=2;AF=0.333333;AN=6;AO=5;CIGAR=3M1X7M;DP=35;DPB=34.8182;DPRA=0;EPP=13.8677;EPPR=48.6112;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=4;ODDS=3.46945e-18;PAIRED=0;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=205;QR=821;RO=21;RPL=0;RPP=13.8677;RPPR=48.6112;RPR=5;RUN=1;SAF=5;SAP=13.8677;SAR=0;SRF=21;SRP=48.6112;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|0:20:15,4,0,0,0:15:585:4,0,0,0:96,0,0,0:-1.69255,0,-46.8728,-6.208,-48.0769,-54.4004,-6.208,-48.0769,-54.4004,-54.4004,-6.208,-48.0769,-54.4004,-54.4004,-54.4004 1|1:5:0,0,0,0,5:0:0:0,0,0,5:0,0,0,205:-18.835,-18.835,-18.835,-18.835,-18.835,-18.835,-18.835,-18.835,-18.835,-18.835,-1.50515,-1.50515,-1.50515,-1.50515,0 0|0:10:6,0,2,2,0:6:236:0,2,2,0:0,78,81,0:-4.96513,-6.77131,-26.2546,-4.8031,-24.2091,-23.607,0,-19.5956,-17.5617,-18.9935,-6.77131,-26.2546,-24.2091,-19.5956,-26.2546 dDocent_Contig_12994 107 . N T 248.291 . AB=0;ABP=0;AC=4;AF=1;AN=4;AO=8;CIGAR=1X;DP=8;DPB=8;DPRA=0;EPP=20.3821;EPPR=0;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=0;NS=2;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=266;QR=0;RO=0;RPL=0;RPP=20.3821;RPPR=0;RPR=8;RUN=1;SAF=0;SAP=20.3821;SAR=8;SRF=0;SRP=0;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 1/1:7:0,7:0:0:7:241:-22.0264,-2.10721,0 ./.:.:.:.:.:.:.:. 1/1:1:0,1:0:0:1:25:-2.49986,-0.30103,0 dDocent_Contig_12995 18 . T C 377.097 . AB=0.207921;ABP=77.8508;AC=3;AF=0.5;AN=6;AO=21;CIGAR=1X;DP=101;DPB=101;DPRA=0;EPP=48.6112;EPPR=176.728;GTI=0;LEN=1;MEANALT=1;MQM=56.5714;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=824;QR=3217;RO=80;RPL=0;RPP=48.6112;RPPR=176.728;RPR=21;RUN=1;SAF=21;SAP=48.6112;SAR=0;SRF=80;SRP=176.728;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:44:34,10:34:1360:10:378:-21.11,0,-109.409 0/1:11:5,6:5:202:6:242:-18.8456,0,-15.2505 0/1:46:41,5:41:1655:5:204:-3.26923,0,-135.326 dDocent_Contig_12996 77 . G T 264.638 . AB=0.363636;ABP=8.34028;AC=2;AF=0.333333;AN=6;AO=12;CIGAR=1X;DP=35;DPB=35;DPRA=8.25;EPP=29.068;EPPR=52.9542;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=436;QR=817;RO=23;RPL=12;RPP=29.068;RPPR=52.9542;RPR=0;RUN=1;SAF=12;SAP=29.068;SAR=0;SRF=23;SRP=52.9542;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:26:16,10:16:567:10:369:-25.7299,0,-43.5326 0/0:2:2,0:2:76:0:0:0,-0.60206,-7.21467 0/1:7:5,2:5:174:2:67:-4.25563,0,-13.8936 dDocent_Contig_12997 13 . T A 66.9041 . AB=0.125;ABP=130.041;AC=2;AF=0.333333;AN=6;AO=14;CIGAR=1X;DP=125;DPB=125;DPRA=0;EPP=33.4109;EPPR=218.69;GTI=0;LEN=1;MEANALT=1;MQM=38;MQMR=29.8378;NS=3;NUMALT=1;ODDS=0;PAIRED=0;PAIREDR=0.144144;PAO=0;PQA=0;PQR=0;PRO=0;QA=524;QR=4184;RO=111;RPL=0;RPP=33.4109;RPPR=244.044;RPR=14;RUN=1;SAF=14;SAP=33.4109;SAR=0;SRF=108;SRP=218.69;SRR=3;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:69:62,7:62:2356:7:263:-1.46712,0,-117.315 0/0:21:20,1:20:740:1:37:0,-2.87549,-37.8298 0/1:35:29,6:29:1088:6:224:-8.47382,0,-50.2892 dDocent_Contig_12998 16 . A T 1713.44 . AB=0.0735294;ABP=217.858;AC=0;AF=0;AN=6;AO=10;CIGAR=2X7M1X1M1X;DP=136;DPB=131;DPRA=0;EPP=24.725;EPPR=115.927;GTI=0;LEN=1;MEANALT=3.66667;MQM=57.6;MQMR=60;NS=3;NUMALT=4;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=395;QR=2051;RO=52;RPL=0;RPP=24.725;RPPR=115.927;RPR=10;RUN=1;SAF=10;SAP=24.725;SAR=0;SRF=52;SRP=115.927;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|0:90:37,37,0,6,3:37:1456:37,0,6,3:1455,0,237,121:-106.738,0,-108.63,-117.876,-119.768,-237.65,-98.4044,-100.297,-218.178,-216.372,-107.901,-109.794,-227.675,-208.204,-226.772 0|0:15:5,7,0,1,2:5:199:7,0,1,2:279,0,39,82:-21.3159,0,-14.2757,-22.821,-16.3829,-39.2071,-19.6161,-13.1784,-36.0018,-35.7008,-16.05,-9.61145,-32.4372,-29.2318,-31.8351 0|0:31:10,16,2,3,0:10:396:16,2,3,0:635,78,119,0:-48.8133,0,-27.7787,-45.4124,-26.1844,-77.4048,-42.0271,-22.7988,-68.2106,-73.7188,-51.8236,-32.5952,-78.0069,-74.6219,-84.4182 dDocent_Contig_13000 64 . C T 103.589 . AB=0.25;ABP=13.8677;AC=1;AF=0.25;AN=4;AO=5;CIGAR=1X;DP=33;DPB=33;DPRA=1.53846;EPP=13.8677;EPPR=63.8115;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=2;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=200;QR=1105;RO=28;RPL=5;RPP=13.8677;RPPR=63.8115;RPR=0;RUN=1;SAF=5;SAP=13.8677;SAR=0;SRF=28;SRP=63.8115;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:13:13,0:13:511:0:0:0,-3.91339,-46.3345 ./.:.:.:.:.:.:.:. 0/1:20:15,5:15:594:5:200:-12.3589,0,-47.776 dDocent_Contig_13001 116 . G A 93.4931 . AB=0.384615;ABP=4.51363;AC=2;AF=0.333333;AN=6;AO=5;CIGAR=1X;DP=20;DPB=20;DPRA=0.928571;EPP=13.8677;EPPR=35.5824;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=175;QR=524;RO=15;RPL=0;RPP=13.8677;RPPR=35.5824;RPR=5;RUN=1;SAF=0;SAP=13.8677;SAR=5;SRF=0;SRP=35.5824;SRR=15;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:7:6,1:6:210:1:35:-1.39142,0,-17.1353 0/1:6:2,4:2:70:4:140:-11.1387,0,-4.84122 0/0:7:7,0:7:244:0:0:0,-2.10721,-22.3001 dDocent_Contig_13002 20 . T A 174.688 . AB=0.296296;ABP=12.7417;AC=2;AF=0.5;AN=4;AO=8;CIGAR=1M1D1M1X;DP=27;DPB=25;DPRA=0;EPP=20.3821;EPPR=44.2683;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=2;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=317;QR=714;RO=19;RPL=0;RPP=20.3821;RPPR=44.2683;RPR=8;RUN=1;SAF=8;SAP=20.3821;SAR=0;SRF=19;SRP=44.2683;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|1:20:14,6:14:531:6:237:-15.6831,0,-42.1138 .:.:.:.:.:.:.:. 0|1:7:5,2:5:183:2:80:-5.48458,0,-14.7181 dDocent_Contig_13003 18 . A C 891.68 . AB=0.607843;ABP=8.16222;AC=3;AF=0.5;AN=6;AO=31;CIGAR=1X;DP=51;DPB=51;DPRA=0;EPP=70.3259;EPPR=46.4397;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=1211;QR=808;RO=20;RPL=0;RPP=70.3259;RPPR=46.4397;RPR=31;RUN=1;SAF=31;SAP=70.3259;SAR=0;SRF=20;SRP=46.4397;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:12:6,6:6:245:6:242:-18.5441,0,-18.8171 0/1:8:5,3:5:200:3:114:-8.22185,0,-15.9711 0/1:31:9,22:9:363:22:855:-67.9249,0,-23.7021 dDocent_Contig_13005 42 . G A 100.813 . AB=0.148936;ABP=53.3238;AC=1;AF=0.166667;AN=6;AO=7;CIGAR=1X;DP=94;DPB=94;DPRA=2;EPP=18.2106;EPPR=191.928;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=282;QR=3434;RO=87;RPL=0;RPP=18.2106;RPPR=191.928;RPR=7;RUN=1;SAF=7;SAP=18.2106;SAR=0;SRF=87;SRP=191.928;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:47:40,7:40:1563:7:282:-11.6042,0,-126.763 0/0:8:8,0:8:319:0:0:0,-2.40824,-29.0751 0/0:39:39,0:39:1552:0:0:0,-11.7402,-139.918 dDocent_Contig_13006 96 . A G 70.4205 . AB=0.214286;ABP=22.8638;AC=2;AF=0.333333;AN=6;AO=6;CIGAR=1X;DP=45;DPB=45;DPRA=0.823529;EPP=16.0391;EPPR=87.6977;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=1.73472e-18;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=203;QR=1337;RO=39;RPL=6;RPP=16.0391;RPPR=87.6977;RPR=0;RUN=1;SAF=6;SAP=16.0391;SAR=0;SRF=39;SRP=87.6977;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:23:20,3:20:681:3:100:-2.40668,0,-54.6859 0/1:5:2,3:2:70:3:103:-8.10482,0,-5.14225 0/0:17:17,0:17:586:0:0:0,-5.11751,-53.0653 dDocent_Contig_13007 72 . G A 1100.65 . AB=0.435897;ABP=5.79424;AC=3;AF=0.5;AN=6;AO=34;CIGAR=1X2M1X;DP=78;DPB=78;DPRA=0;EPP=76.8404;EPPR=42.0968;GTI=0;LEN=1;MEANALT=2;MQM=60;MQMR=60;NS=3;NUMALT=2;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=1106;QR=600;RO=18;RPL=34;RPP=76.8404;RPPR=42.0968;RPR=0;RUN=1;SAF=34;SAP=76.8404;SAR=0;SRF=18;SRP=42.0968;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 1|0:59:13,21,24:13:432:21,24:673,783:-78.5745,-28.2599,-56.8956,-19.2637,0,-46.9985 1|0:3:0,2,1:0:0:2,1:68,34:-8.61386,-3.09788,-2.49582,-5.85587,0,-5.55484 0|1:16:5,11,0:5:168:11,0:365,0:-28.3557,0,-10.6348,-29.8609,-13.9461,-43.4724 dDocent_Contig_13010 22 . G T 1115.82 . AB=0.666667;ABP=16.763;AC=3;AF=0.5;AN=6;AO=38;CIGAR=1M20I3M1X;DP=57;DPB=213;DPRA=0;EPP=85.5263;EPPR=42.0968;GTI=0;LEN=1;MEANALT=1.33333;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=1481;QR=709;RO=18;RPL=0;RPP=85.5263;RPPR=42.0968;RPR=38;RUN=1;SAF=38;SAP=85.5263;SAR=0;SRF=18;SRP=42.0968;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|1:30:9,20:9:355:20:776:-61.0532,0,-23.2016 0|1:5:3,2:3:116:2:80:-6.08664,0,-9.31225 0|1:22:6,16:6:238:16:625:-49.9655,0,-15.1715 dDocent_Contig_13012 8 . T C 166.674 . AB=0.232558;ABP=29.7245;AC=3;AF=0.5;AN=6;AO=10;CIGAR=1X;DP=43;DPB=43;DPRA=0;EPP=24.725;EPPR=74.6689;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=378;QR=1256;RO=33;RPL=0;RPP=24.725;RPPR=74.6689;RPR=10;RUN=1;SAF=10;SAP=24.725;SAR=0;SRF=33;SRP=74.6689;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:25:19,6:19:718:6:226:-13.1758,0,-57.4223 0/1:6:4,2:4:152:2:76:-5.40849,0,-12.243 0/1:12:10,2:10:386:2:76:-3.60231,0,-31.4843 dDocent_Contig_13013 111 . T C 85.9196 . AB=0.16;ABP=53.2147;AC=1;AF=0.166667;AN=6;AO=18;CIGAR=1X;DP=184;DPB=184;DPRA=0;EPP=42.0968;EPPR=361.303;GTI=0;LEN=1;MEANALT=1.33333;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=0.987879;PAO=0;PQA=0;PQR=0;PRO=0;QA=596;QR=5564;RO=165;RPL=0;RPP=42.0968;RPPR=361.303;RPR=18;RUN=1;SAF=0;SAP=42.0968;SAR=18;SRF=0;SRP=361.303;SRR=165;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:104:96,8:96:3223:8:251:0,-8.41099,-267.398 0/0:30:28,2:28:959:2:68:0,-2.57297,-80.1629 0/1:50:41,8:41:1382:8:277:-10.4159,0,-109.841 dDocent_Contig_13014 16 . C A 64.5123 . AB=0.0588235;ABP=175.451;AC=0;AF=0;AN=6;AO=6;CIGAR=2X;DP=117;DPB=117;DPRA=3.4;EPP=16.0391;EPPR=220.158;GTI=0;LEN=1;MEANALT=2;MQM=60;MQMR=60;NS=3;NUMALT=2;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=224;QR=3776;RO=100;RPL=0;RPP=16.0391;RPPR=220.158;RPR=6;RUN=1;SAF=6;SAP=16.0391;SAR=0;SRF=100;SRP=220.158;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|0:65:55,4,6:55:2094:4,6:148,239:-3.14095,-7.6018,-178.143,0,-159.665,-169.965 0|0:15:15,0,0:15:561:0,0:0,0:0,-4.51545,-50.8284,-4.51545,-50.8284,-50.8284 0|0:37:30,2,5:30:1121:2,5:76,193:-6.82282,-9.62252,-100.799,0,-85.5494,-90.2775 dDocent_Contig_13016 50 . G T 100.195 . AB=0.25;ABP=13.8677;AC=1;AF=0.25;AN=4;AO=5;CIGAR=1X;DP=28;DPB=28;DPRA=2.5;EPP=13.8677;EPPR=52.9542;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=2;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=0.913043;PAO=0;PQA=0;PQR=0;PRO=0;QA=193;QR=882;RO=23;RPL=5;RPP=13.8677;RPPR=52.9542;RPR=0;RUN=1;SAF=5;SAP=13.8677;SAR=0;SRF=23;SRP=52.9542;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL ./.:.:.:.:.:.:.:. 0/1:20:15,5:15:578:5:193:-11.7185,0,-46.3363 0/0:8:8,0:8:304:0:0:0,-2.40824,-27.7163 dDocent_Contig_13017 9 . A G 1592.84 . AB=0.385093;ABP=21.4746;AC=3;AF=0.5;AN=6;AO=62;CIGAR=1X;DP=161;DPB=161;DPRA=0;EPP=137.642;EPPR=217.986;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=6.93889e-18;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=2359;QR=3813;RO=99;RPL=0;RPP=137.642;RPPR=217.986;RPR=62;RUN=1;SAF=62;SAP=137.642;SAR=0;SRF=99;SRP=217.986;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:89:60,29:60:2311:29:1100:-72.5086,0,-181.413 0/1:49:26,23:26:1000:23:892:-65.8489,0,-75.5607 0/1:23:13,10:13:502:10:367:-26.4498,0,-38.6044 dDocent_Contig_13019 8 . T C 81.0475 . AB=0.157895;ABP=41.6397;AC=1;AF=0.166667;AN=6;AO=6;CIGAR=1X;DP=67;DPB=67;DPRA=2.62069;EPP=16.0391;EPPR=135.47;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=1.73472e-18;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=230;QR=2366;RO=61;RPL=0;RPP=16.0391;RPPR=135.47;RPR=6;RUN=1;SAF=6;SAP=16.0391;SAR=0;SRF=61;SRP=135.47;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:38:32,6:32:1245:6:230:-9.62762,0,-100.902 0/0:7:7,0:7:273:0:0:0,-2.10721,-24.938 0/0:22:22,0:22:848:0:0:0,-6.62266,-76.6417 dDocent_Contig_13020 52 . T A 245.117 . AB=0.344828;ABP=9.07545;AC=2;AF=0.333333;AN=6;AO=10;CIGAR=1X;DP=31;DPB=31;DPRA=7.25;EPP=24.725;EPPR=48.6112;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=400;QR=832;RO=21;RPL=10;RPP=24.725;RPPR=48.6112;RPR=0;RUN=1;SAF=10;SAP=24.725;SAR=0;SRF=21;SRP=48.6112;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:20:12,8:12:469:8:318:-22.9637,0,-36.5313 0/0:2:2,0:2:81:0:0:0,-0.60206,-7.68573 0/1:9:7,2:7:282:2:82:-5.07041,0,-23.0433 dDocent_Contig_13021 8 . T G 1879.49 . AB=0.376289;ABP=28.7993;AC=3;AF=0.5;AN=6;AO=73;CIGAR=1X;DP=194;DPB=194;DPRA=0;EPP=161.528;EPPR=265.758;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=1.38778e-17;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=2788;QR=4662;RO=121;RPL=0;RPP=161.528;RPPR=265.758;RPR=73;RUN=1;SAF=73;SAP=161.528;SAR=0;SRF=121;SRP=265.758;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:148:92,56:92:3537:56:2127:-147.103,0,-273.897 0/1:9:3,6:3:117:6:234:-18.7218,0,-8.20111 0/1:37:26,11:26:1008:11:427:-27.647,0,-79.892 dDocent_Contig_13022 56 . T C 3196.36 . AB=0.879032;ABP=157.745;AC=4;AF=0.666667;AN=6;AO=136;CIGAR=1X;DP=153;DPB=153;DPRA=0;EPP=298.331;EPPR=39.9253;GTI=0;LEN=1;MEANALT=1;MQM=33.0515;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=4661;QR=681;RO=17;RPL=136;RPP=298.331;RPPR=39.9253;RPR=0;RUN=1;SAF=136;SAP=298.331;SAR=0;SRF=17;SRP=39.9253;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:75:9,66:9:365:66:2281:-156.619,0,-10.6378 1/1:29:2,27:2:82:27:929:-64.3308,-0.950192,0 0/1:49:6,43:6:234:43:1451:-102.209,0,-6.67996 dDocent_Contig_13023 8 . T G 118.872 . AB=0.119658;ABP=150.021;AC=2;AF=0.333333;AN=6;AO=25;CIGAR=1X;DP=342;DPB=342;DPRA=0;EPP=57.2971;EPPR=689.196;GTI=0;LEN=1;MEANALT=1.33333;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=966;QR=12157;RO=316;RPL=0;RPP=57.2971;RPPR=689.196;RPR=25;RUN=1;SAF=25;SAP=57.2971;SAR=0;SRF=316;SRP=689.196;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:225:213,11:213:8208:11:429:0,-28.8547,-699.523 0/1:34:31,3:31:1195:3:111:-0.118468,0,-97.6095 0/1:83:72,11:72:2754:11:426:-13.7092,0,-223.055 dDocent_Contig_13024 41 . T G 1744.77 . AB=0.272152;ABP=145.503;AC=3;AF=0.5;AN=6;AO=86;CIGAR=1X1M1X;DP=316;DPB=316;DPRA=0;EPP=189.757;EPPR=502.449;GTI=0;LEN=1;MEANALT=1;MQM=43.593;MQMR=44.6435;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=0.1;PAO=0;PQA=0;PQR=0;PRO=0;QA=3428;QR=8605;RO=230;RPL=0;RPP=189.757;RPPR=502.449;RPR=86;RUN=1;SAF=86;SAP=189.757;SAR=0;SRF=230;SRP=502.449;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|1:208:149,59:149:5582:59:2365:-125.807,0,-422.332 0|1:35:21,14:21:778:14:549:-36.5709,0,-57.5079 0|1:73:60,13:60:2245:13:514:-17.6222,0,-170.493 dDocent_Contig_13025 107 . N A 535.251 . AB=0;ABP=0;AC=6;AF=1;AN=6;AO=17;CIGAR=1X;DP=17;DPB=17;DPRA=0;EPP=39.9253;EPPR=0;GTI=0;LEN=1;MEANALT=1;MQM=53.7647;MQMR=0;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=579;QR=0;RO=0;RPL=0;RPP=39.9253;RPPR=0;RPR=17;RUN=1;SAF=0;SAP=39.9253;SAR=17;SRF=0;SRP=0;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 1/1:11:0,11:0:0:11:378:-34.3156,-3.31133,0 1/1:3:0,3:0:0:3:100:-9.31999,-0.90309,0 1/1:3:0,3:0:0:3:101:-9.41202,-0.90309,0 dDocent_Contig_13026 107 . N C 533.14 . AB=0;ABP=0;AC=6;AF=1;AN=6;AO=18;CIGAR=1X;DP=18;DPB=18;DPRA=0;EPP=42.0968;EPPR=0;GTI=0;LEN=1;MEANALT=1;MQM=37;MQMR=0;NS=3;NUMALT=1;ODDS=0;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=608;QR=0;RO=0;RPL=0;RPP=42.0968;RPPR=0;RPR=18;RUN=1;SAF=0;SAP=42.0968;SAR=18;SRF=0;SRP=0;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 1/1:10:0,10:0:0:10:330:-28.6254,-3.0103,0 1/1:6:0,6:0:0:6:208:-17.9645,-1.80618,0 1/1:2:0,2:0:0:2:70:-6.24646,-0.60206,0 dDocent_Contig_13027 8 . T C 141.996 . AB=0;ABP=0;AC=2;AF=0.333333;AN=6;AO=2;CIGAR=3X;DP=67;DPB=67;DPRA=0;EPP=7.35324;EPPR=122.441;GTI=0;LEN=1;MEANALT=2;MQM=60;MQMR=52.1636;NS=3;NUMALT=2;ODDS=0;PAIRED=1;PAIREDR=0.8;PAO=0;PQA=0;PQR=0;PRO=0;QA=78;QR=2094;RO=55;RPL=0;RPP=7.35324;RPPR=122.441;RPR=2;RUN=1;SAF=2;SAP=7.35324;SAR=0;SRF=55;SRP=122.441;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|1:30:22,8,0:22:839:8,0:310,0:-15.7112,0,-61.703,-22.3339,-64.1113,-86.1018 0|1:10:9,1,0:9:336:1,0:39,0:-0.886264,0,-27.5273,-3.59553,-27.8283,-31.0359 0|0:27:24,1,2:24:919:1,2:38,78:0,-5.88731,-76.7172,-0.679502,-70.6044,-71.3995 dDocent_Contig_13028 17 . C T 91.1904 . AB=0.101449;ABP=98.2089;AC=1;AF=0.166667;AN=6;AO=7;CIGAR=2M1X3M1X2M;DP=69;DPB=76.1111;DPRA=0;EPP=18.2106;EPPR=102.898;GTI=0;LEN=1;MEANALT=3;MQM=60;MQMR=60;NS=3;NUMALT=3;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=278;QR=1817;RO=46;RPL=0;RPP=18.2106;RPPR=102.898;RPR=7;RUN=1;SAF=7;SAP=18.2106;SAR=0;SRF=46;SRP=102.898;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|0:31:21,6,2,2:21:827:6,2,2:90,77,82:-0.491102,-2.27297,-68.4959,-0.452867,-63.9814,-68.0282,0,-63.5326,-61.8568,-67.5798 0|0:10:7,0,1,2:7:280:0,1,2:0,38,80:-4.49597,-6.60318,-29.6732,-3.49328,-26.5586,-26.2576,0,-23.0827,-19.9687,-22.4807 0|1:28:18,1,4,4:18:710:1,4,4:11,163,160:-8.06924,-12.9486,-71.079,0,-57.9293,-57.2801,-0.272523,-58.1982,-45.299,-57.5489 dDocent_Contig_13029 23 . C A 5397.66 . AB=0.149425;ABP=653.129;AC=1;AF=0.166667;AN=6;AO=91;CIGAR=11M1X8M;DP=609;DPB=628.55;DPRA=0;EPP=200.614;EPPR=196.271;GTI=0;LEN=1;MEANALT=18;MQM=39.7912;MQMR=60;NS=3;NUMALT=5;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=3530;QR=3502;RO=89;RPL=0;RPP=200.614;RPPR=196.271;RPR=91;RUN=1;SAF=91;SAP=200.614;SAR=0;SRF=89;SRP=196.271;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|0:338:46,105,25,6,14,49:46:1820:105,25,6,14,49:3769,747,209,542,1891:-276.092,0,-118.187,-233.119,-92.9775,-375.386,-274.22,-134.076,-367.192,-422.207,-248.586,-108.442,-341.558,-382.66,-394.165,-146.623,-6.48085,-239.597,-280.698,-255.064,-281.667 0|1:59:7,19,3,4,6,17:7:277:19,3,4,6,17:634,113,66,236,656:-72.4552,-26.6824,-43.7712,-65.3097,-40.2386,-87.2134,-70.8073,-45.7429,-84.3606,-92.4077,-56.5944,-31.5242,-70.1495,-75.6469,-77.5957,-25.0657,0,-38.6238,-44.1263,-29.9078,-42.7599 0|0:212:36,74,4,9,7,25:36:1405:74,4,9,7,25:2695,158,356,277,983:-196.741,0,-93.2251,-194.597,-102.52,-308.893,-180.52,-88.4444,-283.04,-293.312,-186.529,-94.4529,-289.048,-274.972,-299.923,-132.958,-40.8841,-235.478,-221.402,-227.411,-240.934 dDocent_Contig_13030 111 . T C 91.9335 . AB=0.333333;ABP=6.62942;AC=2;AF=0.333333;AN=6;AO=5;CIGAR=1X;DP=22;DPB=22;DPRA=1.07143;EPP=13.8677;EPPR=39.9253;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=166;QR=579;RO=17;RPL=0;RPP=13.8677;RPPR=39.9253;RPR=5;RUN=1;SAF=0;SAP=13.8677;SAR=5;SRF=0;SRP=39.9253;SRR=17;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:10:9,1:9:304:1:32:-0.189013,0,-24.6784 0/1:5:1,4:1:35:4:134:-10.8857,0,-1.99348 0/0:7:7,0:7:240:0:0:0,-2.10721,-21.9352 dDocent_Contig_13031 8 . T C 1446.85 . AB=0.424779;ABP=8.56389;AC=4;AF=0.666667;AN=6;AO=48;CIGAR=6M1X5M;DP=113;DPB=113;DPRA=0;EPP=107.241;EPPR=89.8692;GTI=0;LEN=1;MEANALT=2.33333;MQM=60;MQMR=60;NS=3;NUMALT=3;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=1857;QR=1508;RO=40;RPL=0;RPP=107.241;RPPR=89.8692;RPR=48;RUN=1;SAF=48;SAP=107.241;SAR=0;SRF=40;SRP=89.8692;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|1:65:26,0,10,29:26:979:0,10,29:0,389,1122:-84.3374,-92.1642,-172.382,-60.1943,-140.411,-137.401,0,-80.2131,-48.2403,-71.4833 1|1:21:4,0,7,10:4:152:0,7,10:0,270,390:-40.5697,-41.7738,-54.2383,-19.6027,-32.0659,-29.9587,-9.71254,-22.1765,0,-19.1662 0|1:27:10,4,4,9:10:377:4,4,9:157,156,345:-25.3007,-15.3968,-45.0855,-15.4866,-33.4644,-45.175,0,-17.9734,-18.0631,-28.1793 dDocent_Contig_13032 132 . A G 37.7823 . AB=0;ABP=0;AC=2;AF=0.333333;AN=6;AO=2;CIGAR=2X1M1X;DP=16;DPB=16;DPRA=0.285714;EPP=7.35324;EPPR=33.4109;GTI=0;LEN=1;MEANALT=1;MQM=19;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=0;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=78;QR=547;RO=14;RPL=0;RPP=7.35324;RPPR=33.4109;RPR=2;RUN=1;SAF=0;SAP=7.35324;SAR=2;SRF=0;SRP=33.4109;SRR=14;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|0:8:8,0:8:309:0:0:0,-2.40824,-28.1715 1|1:2:0,2:0:0:2:78:-3.60168,-0.60206,0 0|0:6:6,0:6:238:0:0:0,-1.80618,-21.7944 dDocent_Contig_13033 63 . G T 257.797 . AB=0.428571;ABP=3.63072;AC=3;AF=0.5;AN=6;AO=10;CIGAR=1X;DP=31;DPB=31;DPRA=0.692308;EPP=24.725;EPPR=48.6112;GTI=0;LEN=1;MEANALT=1;MQM=43.6;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=351;QR=832;RO=21;RPL=10;RPP=24.725;RPPR=48.6112;RPR=0;RUN=1;SAF=10;SAP=24.725;SAR=0;SRF=21;SRP=48.6112;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:14:8,6:8:314:6:218:-15.3837,0,-24.4087 1/1:4:0,4:0:0:4:133:-11.9188,-1.20412,0 0/0:13:13,0:13:518:0:0:0,-3.91339,-46.9668 dDocent_Contig_13036 16 . C T 722.715 . AB=0.543478;ABP=3.76559;AC=3;AF=0.5;AN=6;AO=25;CIGAR=1X;DP=46;DPB=46;DPRA=0;EPP=57.2971;EPPR=48.6112;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=1006;QR=836;RO=21;RPL=0;RPP=57.2971;RPPR=48.6112;RPR=25;RUN=1;SAF=25;SAP=57.2971;SAR=0;SRF=21;SRP=48.6112;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:25:10,15:10:401:15:601:-46.9011,0,-28.9218 0/1:8:3,5:3:122:5:201:-16.0627,0,-8.96425 0/1:13:8,5:8:313:5:204:-14.8306,0,-24.614 dDocent_Contig_13037 10 . G A 134.269 . AB=0.454545;ABP=3.20771;AC=1;AF=0.166667;AN=6;AO=5;CIGAR=1X2M1X;DP=40;DPB=40;DPRA=0.758621;EPP=13.8677;EPPR=79.0118;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=202;QR=1350;RO=35;RPL=0;RPP=13.8677;RPPR=79.0118;RPR=5;RUN=1;SAF=5;SAP=13.8677;SAR=0;SRF=35;SRP=79.0118;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|0:24:24,0:24:934:0:0:0,-7.22472,-84.3688 0|1:11:6,5:6:222:5:202:-15.2507,0,-17.02 0|0:5:5,0:5:194:0:0:0,-1.50515,-17.8309 dDocent_Contig_13039 121 . G A 33.6612 . AB=0.2;ABP=22.5536;AC=1;AF=0.166667;AN=6;AO=6;CIGAR=3M1X;DP=64;DPB=64;DPRA=1.96154;EPP=16.0391;EPPR=115.927;GTI=0;LEN=1;MEANALT=2;MQM=26;MQMR=32.3077;NS=3;NUMALT=3;ODDS=3.46945e-18;PAIRED=0;PAIREDR=0.346154;PAO=0;PQA=0;PQR=0;PRO=0;QA=215;QR=1767;RO=52;RPL=0;RPP=16.0391;RPPR=115.927;RPR=6;RUN=1;SAF=0;SAP=16.0391;SAR=6;SRF=0;SRP=115.927;SRR=52;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|1:25:17,3,0,5:17:570:3,0,5:104,0,179:-4.88878,-4.28367,-36.8861,-10.0063,-37.7892,-43.5147,0,-27.7885,-33.5139,-32.0087 0|0:26:22,0,3,1:22:757:0,3,1:0,73,36:0,-6.62266,-52.4306,-1.79717,-47.5791,-46.676,-4.61022,-50.4289,-45.5777,-50.1279 0|0:13:13,0,0,0:13:440:0,0,0:0,0,0:0,-3.91339,-29.0137,-3.91339,-29.0137,-29.0137,-3.91339,-29.0137,-29.0137,-29.0137 dDocent_Contig_13040 162 . A G 62.6081 . AB=0.3;ABP=6.48466;AC=1;AF=0.166667;AN=6;AO=3;CIGAR=1X;DP=38;DPB=38;DPRA=0.714286;EPP=9.52472;EPPR=79.0118;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=119;QR=1294;RO=35;RPL=3;RPP=9.52472;RPPR=79.0118;RPR=0;RUN=1;SAF=0;SAP=9.52472;SAR=3;SRF=0;SRP=79.0118;SRR=35;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:20:20,0:20:730:0:0:0,-6.0206,-66.0111 0/1:10:7,3:7:247:3:119:-8.08471,0,-19.5555 0/0:8:8,0:8:317:0:0:0,-2.40824,-28.8963 dDocent_Contig_13041 112 . A C 765.224 . AB=0.46;ABP=3.70517;AC=4;AF=0.666667;AN=6;AO=32;CIGAR=1X;DP=59;DPB=59;DPRA=0;EPP=72.4974;EPPR=61.6401;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=1046;QR=959;RO=27;RPL=0;RPP=72.4974;RPPR=61.6401;RPR=32;RUN=1;SAF=0;SAP=72.4974;SAR=32;SRF=0;SRP=61.6401;SRR=27;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:36:21,15:21:747:15:474:-32.1247,0,-56.7163 1/1:9:0,9:0:0:9:298:-27.1416,-2.70927,0 0/1:14:6,8:6:212:8:274:-20.779,0,-15.2103 dDocent_Contig_13042 63 . C A 837.961 . AB=0.462687;ABP=3.82055;AC=3;AF=0.5;AN=6;AO=31;CIGAR=1X;DP=67;DPB=67;DPRA=0;EPP=70.3259;EPPR=81.1833;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=1205;QR=1402;RO=36;RPL=31;RPP=70.3259;RPPR=81.1833;RPR=0;RUN=1;SAF=31;SAP=70.3259;SAR=0;SRF=36;SRP=81.1833;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:43:24,19:24:923:19:747:-54.6055,0,-70.423 0/1:12:9,3:9:356:3:112:-6.83427,0,-28.7895 0/1:12:3,9:3:123:9:346:-27.8793,0,-7.85243 dDocent_Contig_13044 51 . A C 62.3803 . AB=0.25;ABP=9.52472;AC=1;AF=0.166667;AN=6;AO=3;CIGAR=1X;DP=18;DPB=18;DPRA=4;EPP=9.52472;EPPR=35.5824;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=0;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=122;QR=602;RO=15;RPL=3;RPP=9.52472;RPPR=35.5824;RPR=0;RUN=1;SAF=3;SAP=9.52472;SAR=0;SRF=15;SRP=35.5824;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:12:9,3:9:362:3:122:-7.76013,0,-29.3316 0/0:1:1,0:1:41:0:0:0,-0.30103,-4.09457 0/0:5:5,0:5:199:0:0:0,-1.50515,-18.2887 dDocent_Contig_13045 17 . G A 1238.09 . AB=0.324324;ABP=42.6837;AC=3;AF=0.5;AN=6;AO=48;CIGAR=1X;DP=148;DPB=148;DPRA=0;EPP=107.241;EPPR=211.559;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=59.85;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=0.98;PAO=0;PQA=0;PQR=0;PRO=0;QA=1921;QR=4004;RO=100;RPL=0;RPP=107.241;RPPR=220.158;RPR=48;RUN=1;SAF=48;SAP=107.241;SAR=0;SRF=99;SRP=211.559;SRR=1;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:92:71,21:71:2834:21:849:-49.0267,0,-227.469 0/1:14:7,7:7:283:7:271:-20.5396,0,-21.6287 0/1:42:22,20:22:887:20:801:-59.7654,0,-67.391 dDocent_Contig_13047 28 . A G 83.4476 . AB=0.0833333;ABP=39.2015;AC=1;AF=0.166667;AN=6;AO=2;CIGAR=3M3I3M1X6M4I5M;DP=98;DPB=99.7222;DPRA=0.96;EPP=3.0103;EPPR=109.412;GTI=0;LEN=1;MEANALT=5;MQM=51;MQMR=60;NS=3;NUMALT=2;ODDS=0;PAIRED=0;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=70;QR=1937;RO=49;RPL=0;RPP=7.35324;RPPR=109.412;RPR=2;RUN=1;SAF=1;SAP=3.0103;SAR=1;SRF=49;SRP=109.412;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|0:49:21,0,5:21:827:0,5:0,176:-7.99842,-14.32,-82.3608,0,-68.0384,-66.5332 0|1:24:6,2,0:6:237:2,0:70,0:-3.86726,0,-18.9015,-5.67344,-19.5036,-25.1781 0|0:25:22,0,0:22:873:0,0:0,0:0,-6.62266,-78.5106,-6.62266,-78.5106,-78.5106 dDocent_Contig_13048 15 . G A 602.826 . AB=0.328767;ABP=21.6017;AC=3;AF=0.5;AN=6;AO=24;CIGAR=1X;DP=73;DPB=73;DPRA=0;EPP=55.1256;EPPR=109.412;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=0.979592;PAO=0;PQA=0;PQR=0;PRO=0;QA=963;QR=1919;RO=49;RPL=0;RPP=55.1256;RPPR=109.412;RPR=24;RUN=1;SAF=24;SAP=55.1256;SAR=0;SRF=49;SRP=109.412;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:26:19,7:19:729:7:284:-18.1072,0,-58.0931 0/1:25:12,13:12:484:13:515:-39.1711,0,-36.3859 0/1:22:18,4:18:706:4:164:-8.52724,0,-57.2378 dDocent_Contig_13050 30 . T A 260.265 . AB=0.166667;ABP=20.3821;AC=1;AF=0.166667;AN=6;AO=3;CIGAR=1X3M;DP=34;DPB=34;DPRA=2.25;EPP=9.52472;EPPR=50.7827;GTI=0;LEN=1;MEANALT=2;MQM=60;MQMR=60;NS=3;NUMALT=2;ODDS=3.46945e-18;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=119;QR=868;RO=22;RPL=0;RPP=9.52472;RPPR=50.7827;RPR=3;RUN=1;SAF=3;SAP=9.52472;SAR=0;SRF=22;SRP=50.7827;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|0:8:8,0,0:8:318:0,0:0,0:0,-2.40824,-28.9876,-2.40824,-28.9876,-28.9876 0|1:18:6,9,3:6:239:9,3:360,119:-27.8504,0,-16.9728,-19.8617,-9.8869,-38.6389 0|0:8:8,0,0:8:311:0,0:0,0:0,-2.40824,-28.3487,-2.40824,-28.3487,-28.3487 dDocent_Contig_13051 109 . A T 2168.18 . AB=0.0769231;ABP=43.4331;AC=0;AF=0;AN=6;AO=3;CIGAR=1X2M1X2M;DP=125;DPB=125;DPRA=0;EPP=9.52472;EPPR=52.9542;GTI=0;LEN=1;MEANALT=4;MQM=60;MQMR=60;NS=3;NUMALT=4;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=105;QR=783;RO=23;RPL=0;RPP=9.52472;RPPR=52.9542;RPR=3;RUN=1;SAF=0;SAP=9.52472;SAR=3;SRF=0;SRP=52.9542;SRR=23;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|0:51:11,0,0,20,19:11:366:0,0,20,19:0,0,684,659:-76.1825,-79.4938,-109.111,-79.4938,-109.111,-109.111,-23.9714,-53.5891,-53.5891,-47.5685,-25.9182,-55.5373,-55.5373,0,-49.8177 0|0:26:10,2,0,2,12:10:347:2,0,2,12:70,0,70,421:-31.2526,-28.5676,-56.1721,-34.2629,-56.7741,-62.4697,-28.5676,-51.0786,-56.7741,-56.1721,0,-22.5102,-28.206,-22.5102,-24.5936 0|0:48:2,1,3,2,39:2:70:1,3,2,39:35,99,70,1325:-112.906,-110.66,-116.055,-105.504,-108.352,-110.297,-107.812,-110.66,-105.504,-112.906,-6.04185,-8.89119,-3.74062,-6.04185,0 dDocent_Contig_13052 34 . G T 48.4336 . AB=0.131579;ABP=47.8112;AC=1;AF=0.166667;AN=6;AO=5;CIGAR=1X2M1X;DP=112;DPB=112;DPRA=1.02703;EPP=13.8677;EPPR=235.358;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=197;QR=4131;RO=107;RPL=0;RPP=13.8677;RPPR=235.358;RPR=5;RUN=1;SAF=5;SAP=13.8677;SAR=0;SRF=107;SRP=235.358;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|0:53:53,0:53:2062:0:0:0,-15.9546,-185.798 0|0:21:21,0:21:795:0:0:0,-6.32163,-71.8703 0|1:38:33,5:33:1274:5:197:-6.66726,0,-103.507 dDocent_Contig_13053 11 . T C 253.793 . AB=0.08;ABP=41.3151;AC=0;AF=0;AN=6;AO=2;CIGAR=4M1X3M;DP=36;DPB=28.5;DPRA=3.57143;EPP=7.35324;EPPR=48.6112;GTI=0;LEN=1;MEANALT=3;MQM=60;MQMR=60;NS=3;NUMALT=3;ODDS=0;PAIRED=0;PAIREDR=0.809524;PAO=0;PQA=0;PQR=0;PRO=0;QA=79;QR=819;RO=21;RPL=0;RPP=7.35324;RPPR=48.6112;RPR=2;RUN=1;SAF=2;SAP=7.35324;SAR=0;SRF=21;SRP=48.6112;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|0:25:13,9,2,1:13:507:9,2,1:322,79,41:-22.3115,0,-38.9573,-19.719,-35.1655,-60.8068,-22.8371,-38.2813,-58.0233,-64.2244 0|0:7:7,0,0,0:7:273:0,0,0:0,0,0:0,-2.10721,-24.9375,-2.10721,-24.9375,-24.9375,-2.10721,-24.9375,-24.9375,-24.9375 0|0:4:1,1,0,2:1:39:1,0,2:35,0,82:-6.50686,-3.98002,-6.87827,-6.80789,-7.1793,-10.0138,0,-0.397935,-3.22577,-2.62371 dDocent_Contig_13055 108 . C A 567.895 . AB=0.308511;ABP=32.9489;AC=3;AF=0.5;AN=6;AO=29;CIGAR=1X;DP=94;DPB=94;DPRA=0;EPP=65.983;EPPR=144.156;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=49.4154;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=0.969231;PAO=0;PQA=0;PQR=0;PRO=0;QA=996;QR=2237;RO=65;RPL=0;RPP=65.983;RPPR=144.156;RPR=29;RUN=1;SAF=0;SAP=65.983;SAR=29;SRF=0;SRP=144.156;SRR=65;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:44:32,12:32:1106:12:429:-25.7043,0,-84.8574 0/1:10:4,6:4:135:6:179:-13.3922,0,-9.47328 0/1:40:29,11:29:996:11:388:-23.2159,0,-76.2436 dDocent_Contig_13056 76 . T C 292.225 . AB=0.2;ABP=81.1833;AC=3;AF=0.5;AN=6;AO=20;CIGAR=1X;DP=100;DPB=100;DPRA=0;EPP=46.4397;EPPR=176.728;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=708;QR=2819;RO=80;RPL=20;RPP=46.4397;RPPR=176.728;RPR=0;RUN=1;SAF=20;SAP=46.4397;SAR=0;SRF=80;SRP=176.728;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:67:60,7:60:2118:7:244:-2.12985,0,-170.71 0/1:17:10,7:10:344:7:252:-17.911,0,-26.174 0/1:16:10,6:10:357:6:212:-14.6085,0,-27.6557 dDocent_Contig_13057 59 . C A 84.0187 . AB=0.117647;ABP=24.5973;AC=1;AF=0.166667;AN=6;AO=5;CIGAR=1M1X6M;DP=104;DPB=103.25;DPRA=0;EPP=13.8677;EPPR=181.071;GTI=0;LEN=1;MEANALT=2.5;MQM=60;MQMR=60;NS=3;NUMALT=4;ODDS=0;PAIRED=1;PAIREDR=0.792683;PAO=0;PQA=0;PQR=0;PRO=0;QA=202;QR=3235;RO=82;RPL=5;RPP=13.8677;RPPR=181.071;RPR=0;RUN=1;SAF=5;SAP=13.8677;SAR=0;SRF=82;SRP=181.071;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|0:56:45,1,3,3,4:45:1779:1,3,3,4:40,116,123,157:0,-10.2509,-156.352,-4.02185,-147.125,-149.518,-3.38904,-146.5,-140.268,-148.892,-0.636277,-143.741,-137.509,-136.883,-145.832 0|1:17:15,0,0,2,0:15:593:0,0,2,0:0,0,79,0:-2.37973,-6.89518,-55.6961,-6.89518,-55.6961,-55.6961,0,-49.1955,-49.1955,-48.5935,-6.89518,-55.6961,-55.6961,-49.1955,-55.6961 0|0:31:22,5,0,0,4:22:863:5,0,0,4:196,0,0,162:-9.48795,0,-69.4587,-16.1106,-70.9639,-87.0813,-16.1106,-70.9639,-87.0813,-87.0813,-2.74677,-57.6038,-73.7215,-73.7215,-72.5174 dDocent_Contig_13058 16 . G C 116.393 . AB=0.25;ABP=16.0391;AC=2;AF=0.333333;AN=6;AO=6;CIGAR=1M1I2M1X;DP=41;DPB=42.5;DPRA=0.705882;EPP=16.0391;EPPR=79.0118;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=240;QR=1386;RO=35;RPL=0;RPP=16.0391;RPPR=79.0118;RPR=6;RUN=1;SAF=6;SAP=16.0391;SAR=0;SRF=35;SRP=79.0118;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|0:17:17,0:17:670:0:0:0,-5.11751,-60.6299 0|1:3:2,1:2:79:1:40:-3.09259,0,-6.59454 0|1:21:16,5:16:637:5:200:-12.0581,0,-51.3448 dDocent_Contig_13060 69 . A T 1076.68 . AB=0.488372;ABP=3.1113;AC=2;AF=0.333333;AN=6;AO=42;CIGAR=1X;DP=89;DPB=89;DPRA=14.3333;EPP=94.2121;EPPR=105.07;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=1516;QR=1561;RO=47;RPL=42;RPP=94.2121;RPPR=105.07;RPR=0;RUN=1;SAF=42;SAP=94.2121;SAR=0;SRF=47;SRP=105.07;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:56:34,22:34:1118:22:806:-56.0046,0,-84.0555 0/0:3:3,0:3:106:0:0:0,-0.90309,-9.88916 0/1:30:10,20:10:337:20:710:-55.1861,0,-21.6242 dDocent_Contig_13061 44 . C T 77.6597 . AB=0.6;ABP=3.44459;AC=1;AF=0.166667;AN=6;AO=3;CIGAR=1X;DP=38;DPB=38;DPRA=0.30303;EPP=9.52472;EPPR=79.0118;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=8.67362e-19;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=119;QR=1402;RO=35;RPL=0;RPP=9.52472;RPPR=79.0118;RPR=3;RUN=1;SAF=3;SAP=9.52472;SAR=0;SRF=35;SRP=79.0118;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:19:19,0:19:765:0:0:0,-5.71957,-69.1715 0/1:5:2,3:2:79:3:119:-9.58986,0,-5.99209 0/0:14:14,0:14:558:0:0:0,-4.21442,-50.5623 dDocent_Contig_13062 11 . G A 335.561 . AB=0.181818;ABP=90.0666;AC=2;AF=0.333333;AN=6;AO=18;CIGAR=1X;DP=100;DPB=100;DPRA=49.5;EPP=42.0968;EPPR=181.071;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=6.93889e-18;PAIRED=0.944444;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=735;QR=3259;RO=82;RPL=0;RPP=42.0968;RPPR=181.071;RPR=18;RUN=1;SAF=18;SAP=42.0968;SAR=0;SRF=82;SRP=181.071;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:63:55,8:55:2179:8:326:-10.7448,0,-177.319 0/0:1:1,0:1:40:0:0:0,-0.30103,-3.99568 0/1:36:26,10:26:1040:10:409:-26.3335,0,-83.0502 dDocent_Contig_13063 16 . T C 217.011 . AB=0.292683;ABP=18.3165;AC=1;AF=0.166667;AN=6;AO=12;CIGAR=1X;DP=97;DPB=97;DPRA=1.46429;EPP=29.068;EPPR=179.002;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=57.0353;NS=3;NUMALT=1;ODDS=0;PAIRED=0;PAIREDR=0.482353;PAO=0;PQA=0;PQR=0;PRO=0;QA=395;QR=3361;RO=85;RPL=0;RPP=29.068;RPPR=187.585;RPR=12;RUN=1;SAF=0;SAP=29.068;SAR=12;SRF=84;SRP=179.002;SRR=1;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:43:43,0:43:1709:0:0:0,-12.9443,-146.822 0/0:13:13,0:13:509:0:0:0,-3.91339,-46.1573 0/1:41:29,12:29:1143:12:395:-23.5251,0,-86.9254 dDocent_Contig_13064 134 . C T 582.57 . AB=0.694444;ABP=14.8328;AC=2;AF=0.333333;AN=6;AO=25;CIGAR=1X;DP=43;DPB=43;DPRA=2.57143;EPP=57.2971;EPPR=42.0968;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=3.46945e-18;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=800;QR=628;RO=18;RPL=0;RPP=57.2971;RPPR=42.0968;RPR=25;RUN=1;SAF=0;SAP=57.2971;SAR=25;SRF=0;SRP=42.0968;SRR=18;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:24:8,16:8:280:16:517:-39.6145,0,-18.3153 0/1:12:3,9:3:103:9:283:-22.1653,0,-5.99761 0/0:7:7,0:7:245:0:0:0,-2.10721,-22.3912 dDocent_Contig_13065 107 . N G 335.955 . AB=0;ABP=0;AC=6;AF=1;AN=6;AO=12;CIGAR=1X3I1X;DP=12;DPB=30;DPRA=0;EPP=29.068;EPPR=0;GTI=0;LEN=1;MEANALT=1;MQM=39.1667;MQMR=0;NS=3;NUMALT=1;ODDS=0;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=411;QR=0;RO=0;RPL=0;RPP=29.068;RPPR=0;RPR=12;RUN=1;SAF=12;SAP=29.068;SAR=0;SRF=0;SRP=0;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 1|1:8:0,8:0:0:8:273:-23.3066,-2.40824,0 1|1:3:0,3:0:0:3:103:-6.35219,-0.90309,0 1|1:1:0,1:0:0:1:35:-3.45862,-0.30103,0 dDocent_Contig_13066 31 . G A 2113 . AB=0.71875;ABP=42.9111;AC=3;AF=0.5;AN=6;AO=69;CIGAR=2X2M1X;DP=96;DPB=96;DPRA=0;EPP=152.842;EPPR=61.6401;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=2720;QR=1051;RO=27;RPL=0;RPP=152.842;RPPR=61.6401;RPR=69;RUN=1;SAF=69;SAP=152.842;SAR=0;SRF=27;SRP=61.6401;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|1:48:16,32:16:631:32:1272:-100.299,0,-42.6757 0|1:22:7,15:7:267:15:580:-45.9162,0,-17.7675 0|1:26:4,22:4:153:22:868:-70.6078,0,-6.31234 dDocent_Contig_13067 10 . C T 304.294 . AB=0.192771;ABP=71.0585;AC=2;AF=0.333333;AN=6;AO=16;CIGAR=1X;DP=87;DPB=87;DPRA=10.375;EPP=37.7539;EPPR=157.185;GTI=0;LEN=1;MEANALT=1;MQM=59;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=0.9375;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=647;QR=2738;RO=71;RPL=0;RPP=37.7539;RPPR=157.185;RPR=16;RUN=1;SAF=16;SAP=37.7539;SAR=0;SRF=71;SRP=157.185;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:53:45,8:45:1731:8:321:-13.3029,0,-140.084 0/0:4:4,0:4:158:0:0:0,-1.20412,-14.6 0/1:30:22,8:22:849:8:326:-20.6492,0,-67.692 dDocent_Contig_13069 15 . C G 121.708 . AB=0.173913;ABP=45.4956;AC=2;AF=0.333333;AN=6;AO=8;CIGAR=1X;DP=47;DPB=47;DPRA=23;EPP=20.3821;EPPR=87.6977;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=319;QR=1566;RO=39;RPL=0;RPP=20.3821;RPPR=87.6977;RPR=8;RUN=1;SAF=8;SAP=20.3821;SAR=0;SRF=39;SRP=87.6977;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:28:22,6:22:883:6:237:-13.2731,0,-71.3501 0/0:1:1,0:1:40:0:0:0,-0.30103,-3.99568 0/1:18:16,2:16:643:2:82:-2.36114,0,-52.7854 dDocent_Contig_13071 157 . C T 263.209 . AB=0.387097;ABP=6.44263;AC=3;AF=0.5;AN=6;AO=12;CIGAR=1X;DP=31;DPB=31;DPRA=0;EPP=29.068;EPPR=44.2683;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=422;QR=659;RO=19;RPL=0;RPP=29.068;RPPR=44.2683;RPR=12;RUN=1;SAF=0;SAP=29.068;SAR=12;SRF=0;SRP=44.2683;SRR=19;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:19:11,8:11:401:8:282:-20.0015,0,-30.7119 0/1:8:7,1:7:240:1:37:-1.28959,0,-19.5243 0/1:4:1,3:1:18:3:103:-8.40548,0,-0.595853 dDocent_Contig_13072 60 . T C 767.638 . AB=0.276423;ABP=56.4144;AC=3;AF=0.5;AN=6;AO=34;CIGAR=1X;DP=123;DPB=123;DPRA=0;EPP=76.8404;EPPR=196.271;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=0.647059;PAIREDR=0.988764;PAO=0;PQA=0;PQR=0;PRO=0;QA=1314;QR=3538;RO=89;RPL=34;RPP=76.8404;RPPR=196.271;RPR=0;RUN=1;SAF=34;SAP=76.8404;SAR=0;SRF=89;SRP=196.271;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:88:65,23:65:2580:23:879:-52.9227,0,-205.85 0/1:6:2,4:2:79:4:163:-13.2522,0,-5.69106 0/1:29:22,7:22:879:7:272:-16.1116,0,-70.6881 dDocent_Contig_13074 144 . C A 121.593 . AB=0.170732;ABP=41.6201;AC=1;AF=0.166667;AN=6;AO=7;CIGAR=1X;DP=88;DPB=88;DPRA=1.74468;EPP=18.2106;EPPR=178.9;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=58.6667;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=0.962963;PAO=0;PQA=0;PQR=0;PRO=0;QA=285;QR=3166;RO=81;RPL=0;RPP=18.2106;RPPR=178.9;RPR=7;RUN=1;SAF=0;SAP=18.2106;SAR=7;SRF=0;SRP=178.9;SRR=81;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:41:34,7:34:1328:7:285:-13.6822,0,-106.087 0/0:5:5,0:5:197:0:0:0,-1.50515,-15.3281 0/0:42:42,0:42:1641:0:0:0,-12.6433,-147.937 dDocent_Contig_13075 29 . G T 321.99 . AB=0.319149;ABP=16.3625;AC=3;AF=0.5;AN=6;AO=15;CIGAR=1X;DP=47;DPB=47;DPRA=0;EPP=35.5824;EPPR=72.4974;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=564;QR=1292;RO=32;RPL=0;RPP=35.5824;RPPR=72.4974;RPR=15;RUN=1;SAF=15;SAP=35.5824;SAR=0;SRF=32;SRP=72.4974;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:21:13,8:13:527:8:307:-21.6664,0,-41.4551 0/1:3:2,1:2:82:1:40:-3.09259,0,-6.87659 0/1:23:17,6:17:683:6:217:-12.9514,0,-54.874 dDocent_Contig_13076 19 . T C 49.9742 . AB=0.128205;ABP=49.8362;AC=1;AF=0.166667;AN=6;AO=7;CIGAR=1X;DP=133;DPB=133;DPRA=5.54545;EPP=18.2106;EPPR=276.616;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=284;QR=5080;RO=126;RPL=0;RPP=18.2106;RPPR=276.616;RPR=7;RUN=1;SAF=7;SAP=18.2106;SAR=0;SRF=126;SRP=276.616;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:83:81,2:81:3258:2:82:0,-17.2058,-285.487 0/0:11:11,0:11:447:0:0:0,-3.31133,-40.5861 0/1:39:34,5:34:1375:5:202:-6.82132,0,-112.264 dDocent_Contig_13077 15 . C T 214.757 . AB=0.25;ABP=24.725;AC=2;AF=0.5;AN=4;AO=10;CIGAR=1X;DP=40;DPB=40;DPRA=0;EPP=24.725;EPPR=68.1545;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=2;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=405;QR=1207;RO=30;RPL=0;RPP=24.725;RPPR=68.1545;RPR=10;RUN=1;SAF=10;SAP=24.725;SAR=0;SRF=30;SRP=68.1545;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:29:22,7:22:881:7:283:-17.1135,0,-70.8663 ./.:.:.:.:.:.:.:. 0/1:11:8,3:8:326:3:122:-8.06116,0,-26.3985 dDocent_Contig_13078 21 . A T 107.789 . AB=0.333333;ABP=6.62942;AC=1;AF=0.166667;AN=6;AO=6;CIGAR=1X;DP=32;DPB=32;DPRA=4.83333;EPP=16.0391;EPPR=59.4686;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=0.166667;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=224;QR=1029;RO=26;RPL=0;RPP=16.0391;RPPR=59.4686;RPR=6;RUN=1;SAF=6;SAP=16.0391;SAR=0;SRF=26;SRP=59.4686;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:15:10,5:10:399:5:183:-12.3005,0,-31.7543 0/0:3:3,0:3:119:0:0:0,-0.90309,-11.0952 0/0:14:13,1:13:511:1:41:0,-0.119853,-42.2392 dDocent_Contig_13079 8 . T A 630.878 . AB=0.294737;ABP=37.7767;AC=3;AF=0.5;AN=6;AO=28;CIGAR=1X;DP=95;DPB=95;DPRA=0;EPP=63.8115;EPPR=148.499;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=1068;QR=2564;RO=67;RPL=0;RPP=63.8115;RPPR=148.499;RPR=28;RUN=1;SAF=28;SAP=63.8115;SAR=0;SRF=67;SRP=148.499;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:70:56,14:56:2141:14:538:-27.6929,0,-171.846 0/1:3:2,1:2:74:1:39:-2.99347,0,-6.12234 0/1:22:9,13:9:349:13:491:-37.9098,0,-25.1482 dDocent_Contig_13080 10 . C G 3985.7 . AB=0.0842105;ABP=288.319;AC=1;AF=0.166667;AN=6;AO=16;CIGAR=1M1D1X4M;DP=190;DPB=168.571;DPRA=0;EPP=37.7539;EPPR=85.5263;GTI=0;LEN=1;MEANALT=3;MQM=60;MQMR=60;NS=3;NUMALT=2;ODDS=0;PAIRED=1;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=593;QR=1486;RO=38;RPL=0;RPP=37.7539;RPPR=85.5263;RPR=16;RUN=1;SAF=16;SAP=37.7539;SAR=0;SRF=38;SRP=85.5263;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|0:125:27,5,91:27:1051:5,91:192,3368:-267.372,-259.738,-344.613,0,-70.6258,-58.9928 1|0:28:2,6,20:2:78:6,20:232,715:-70.3076,-51.8465,-56.4549,-12.6415,0,-13.0333 0|0:37:9,5,22:9:357:5,22:169,842:-66.4136,-55.4363,-83.3228,0,-15.7412,-22.7934 dDocent_Contig_13081 48 . A G 59.2837 . AB=0.138889;ABP=43.7857;AC=1;AF=0.166667;AN=6;AO=6;CIGAR=1X;DP=66;DPB=66;DPRA=1.85714;EPP=16.0391;EPPR=133.299;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=3.46945e-18;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=240;QR=2237;RO=60;RPL=0;RPP=16.0391;RPPR=133.299;RPR=6;RUN=1;SAF=6;SAP=16.0391;SAR=0;SRF=60;SRP=133.299;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:36:31,5:31:1134:5:199:-7.45098,0,-91.5031 0/0:14:14,0:14:521:0:0:0,-4.21442,-47.2223 0/0:16:15,1:15:582:1:41:0,-0.721913,-48.6267 dDocent_Contig_13082 11 . C A 137.998 . AB=0.173077;ABP=51.2838;AC=2;AF=0.333333;AN=6;AO=9;CIGAR=1X;DP=62;DPB=62;DPRA=2.6;EPP=22.5536;EPPR=118.098;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=357;QR=2078;RO=53;RPL=0;RPP=22.5536;RPPR=118.098;RPR=9;RUN=1;SAF=9;SAP=22.5536;SAR=0;SRF=53;SRP=118.098;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:46:38,8:38:1474:8:317:-15.0484,0,-119.066 0/1:6:5,1:5:202:1:40:-2.1895,0,-16.7559 0/0:10:10,0:10:402:0:0:0,-3.0103,-36.5399 dDocent_Contig_13085 58 . A G 1400.65 . AB=0.509804;ABP=3.09546;AC=3;AF=0.5;AN=6;AO=52;CIGAR=1X;DP=102;DPB=102;DPRA=0;EPP=115.927;EPPR=111.584;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=1948;QR=1936;RO=50;RPL=52;RPP=115.927;RPPR=111.584;RPR=0;RUN=1;SAF=52;SAP=115.927;SAR=0;SRF=50;SRP=111.584;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:67:35,32:35:1355:32:1215:-89.4742,0,-102.05 0/1:8:2,6:2:81:6:216:-17.3766,0,-5.27749 0/1:27:13,14:13:500:14:517:-38.7367,0,-37.2166 dDocent_Contig_13086 32 . G A 67.8769 . AB=0.192308;ABP=24.391;AC=1;AF=0.166667;AN=6;AO=6;CIGAR=1X2M1D11M1X2M;DP=52;DPB=51.6667;DPRA=1.66667;EPP=16.0391;EPPR=96.3836;GTI=0;LEN=1;MEANALT=2.5;MQM=40;MQMR=60;NS=3;NUMALT=1;ODDS=3.46945e-18;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=220;QR=1645;RO=43;RPL=0;RPP=16.0391;RPPR=96.3836;RPR=6;RUN=1;SAF=6;SAP=16.0391;SAR=0;SRF=43;SRP=96.3836;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|1:26:20,5:20:756:5:185:-8.31013,0,-60.6398 0|0:14:11,1:11:414:1:35:0,-0.517034,-34.3047 0|0:12:12,0:12:475:0:0:0,-3.61236,-43.1028 dDocent_Contig_13087 32 . T C 65.0751 . AB=0.162162;ABP=39.6906;AC=2;AF=0.333333;AN=6;AO=8;CIGAR=1X;DP=63;DPB=63;DPRA=0;EPP=3.0103;EPPR=122.441;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=0.963636;PAO=0;PQA=0;PQR=0;PRO=0;QA=303;QR=2162;RO=55;RPL=0;RPP=20.3821;RPPR=122.441;RPR=8;RUN=1;SAF=4;SAP=3.0103;SAR=4;SRF=55;SRP=122.441;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:27:23,4:23:885:4:152:-5.9196,0,-71.8171 0/1:10:8,2:8:312:2:75:-4.10929,0,-25.4286 0/0:26:24,2:24:965:2:76:0,-0.613243,-79.9317 dDocent_Contig_13089 15 . G A 355.024 . AB=0.117647;ABP=24.5973;AC=0;AF=0;AN=6;AO=2;CIGAR=1X2M1X3M2X2M;DP=28;DPB=28;DPRA=4.25;EPP=7.35324;EPPR=29.068;GTI=0;LEN=1;MEANALT=3;MQM=28;MQMR=60;NS=3;NUMALT=3;ODDS=3.46945e-18;PAIRED=0;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=56;QR=458;RO=12;RPL=0;RPP=7.35324;RPPR=29.068;RPR=2;RUN=1;SAF=2;SAP=7.35324;SAR=0;SRF=12;SRP=29.068;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|0:17:6,2,2,7:6:227:2,2,7:56,82,285:-21.7533,-19.6914,-37.6859,-16.7845,-31.5177,-34.7932,0,-14.7677,-11.8564,-16.53 0|0:7:6,0,0,1:6:231:0,0,1:0,0,41:-1.98736,-3.79354,-22.7389,-3.79354,-22.7389,-22.7389,0,-19.3513,-19.3513,-19.0502 0|0:4:0,0,0,4:0:0:0,0,4:0,0,164:-15.1499,-15.1499,-15.1499,-15.1499,-15.1499,-15.1499,-1.20412,-1.20412,-1.20412,0 dDocent_Contig_13091 8 . T C 770.288 . AB=0.254902;ABP=29.6215;AC=6;AF=1;AN=6;AO=13;CIGAR=1X1M;DP=51;DPB=51;DPRA=0;EPP=31.2394;EPPR=26.8965;GTI=0;LEN=1;MEANALT=2.33333;MQM=60;MQMR=60;NS=3;NUMALT=2;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=507;QR=426;RO=11;RPL=0;RPP=31.2394;RPPR=26.8965;RPR=13;RUN=1;SAF=13;SAP=31.2394;SAR=0;SRF=11;SRP=26.8965;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 1|1:27:5,17,5:5:194:17,5:642,195:-51.1952,-0.0913518,-10.9129,-36.6682,0,-51.1054 1|1:3:0,2,1:0:0:2,1:76,39:-9.82194,-3.59553,-2.99347,-6.61275,0,-6.31172 1|1:21:6,7,7:6:232:7,7:244,273:-21.3999,-3.38727,-20.3346,-0.748613,0,-17.7115 dDocent_Contig_13093 9 . A G 294.216 . AB=0.302326;ABP=17.6046;AC=4;AF=0.666667;AN=6;AO=13;CIGAR=1X2M;DP=43;DPB=43;DPRA=0;EPP=31.2394;EPPR=61.6401;GTI=0;LEN=1;MEANALT=1.66667;MQM=52.4615;MQMR=60;NS=3;NUMALT=2;ODDS=0;PAIRED=0.461538;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=448;QR=1066;RO=27;RPL=0;RPP=31.2394;RPPR=61.6401;RPR=13;RUN=1;SAF=13;SAP=31.2394;SAR=0;SRF=27;SRP=61.6401;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|1:21:13,0,8:13:515:0,8:0,255:-16.4117,-20.3251,-62.7672,0,-42.7856,-40.3774 1|1:3:0,2,1:0:0:2,1:79,39:-10.0998,-3.59553,-2.99347,-6.89557,0,-6.59454 0|1:19:14,1,4:14:551:1,4:40,154:-8.41846,-9.33482,-54.3672,0,-42.0254,-44.1168 dDocent_Contig_13094 26 . G A 1022.51 . AB=0.166667;ABP=101.45;AC=1;AF=0.166667;AN=6;AO=17;CIGAR=1X2M1X;DP=102;DPB=102;DPRA=0;EPP=39.9253;EPPR=107.241;GTI=0;LEN=1;MEANALT=3;MQM=60;MQMR=60;NS=3;NUMALT=4;ODDS=0;PAIRED=1;PAIREDR=0.979167;PAO=0;PQA=0;PQR=0;PRO=0;QA=663;QR=1903;RO=48;RPL=0;RPP=39.9253;RPPR=107.241;RPR=17;RUN=1;SAF=17;SAP=39.9253;SAR=0;SRF=48;SRP=107.241;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|0:54:27,5,0,0,22:27:1067:5,0,0,22:192,0,0,851:-61.7561,-54.1253,-140.427,-69.8839,-141.932,-157.69,-69.8839,-141.932,-157.69,-157.69,0,-72.0538,-87.8111,-87.8111,-81.1885 0|1:26:14,10,0,0,1:14:555:10,0,0,1:390,0,0,40:-27.9028,0,-42.7438,-32.1173,-45.7541,-77.8104,-32.1173,-45.7541,-77.8104,-77.8104,-28.8201,-42.4581,-74.5148,-74.5148,-74.2138 0|0:22:7,2,4,3,6:7:281:2,4,3,6:81,151,121,245:-18.1147,-13.5418,-36.0954,-7.85601,-24.3292,-29.8044,-10.2465,-26.7224,-21.0345,-32.4992,0,-16.478,-10.7911,-13.1825,-21.3522 dDocent_Contig_13097 34 . G A 501.742 . AB=0.154545;ABP=231.054;AC=3;AF=0.5;AN=6;AO=34;CIGAR=1X;DP=220;DPB=220;DPRA=0;EPP=76.8404;EPPR=406.904;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=59.8172;NS=3;NUMALT=1;ODDS=1.38778e-17;PAIRED=1;PAIREDR=0.908602;PAO=0;PQA=0;PQR=0;PRO=0;QA=1343;QR=7433;RO=186;RPL=0;RPP=76.8404;RPPR=406.904;RPR=34;RUN=1;SAF=34;SAP=76.8404;SAR=0;SRF=186;SRP=406.904;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:131:117,14:117:4672:14:539:-9.40938,0,-380.948 0/1:31:25,6:25:1002:6:241:-12.7344,0,-81.1397 0/1:58:44,14:44:1759:14:563:-33.5534,0,-140.936 dDocent_Contig_13098 27 . G C 92.3044 . AB=0.285714;ABP=8.59409;AC=1;AF=0.166667;AN=6;AO=4;CIGAR=1X;DP=20;DPB=20;DPRA=4.66667;EPP=11.6962;EPPR=37.7539;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=0;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=162;QR=639;RO=16;RPL=0;RPP=11.6962;RPPR=37.7539;RPR=4;RUN=1;SAF=4;SAP=11.6962;SAR=0;SRF=16;SRP=37.7539;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:14:10,4:10:397:4:162:-10.7525,0,-31.8722 0/0:1:1,0:1:40:0:0:0,-0.30103,-3.99568 0/0:5:5,0:5:202:0:0:0,-1.50515,-18.5621 dDocent_Contig_13100 107 . N A 103.54 . AB=0;ABP=0;AC=4;AF=1;AN=4;AO=3;CIGAR=1X;DP=3;DPB=3;DPRA=0;EPP=9.52472;EPPR=0;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=0;NS=2;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=104;QR=0;RO=0;RPL=0;RPP=9.52472;RPPR=0;RPR=3;RUN=1;SAF=0;SAP=9.52472;SAR=3;SRF=0;SRP=0;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 1/1:1:0,1:0:0:1:35:-3.49863,-0.30103,0 ./.:.:.:.:.:.:.:. 1/1:2:0,2:0:0:2:69:-6.55266,-0.60206,0 dDocent_Contig_13101 8 . T A 1576.53 . AB=0.654762;ABP=20.4855;AC=3;AF=0.5;AN=6;AO=55;CIGAR=1X;DP=84;DPB=84;DPRA=0;EPP=122.441;EPPR=65.983;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=2083;QR=1111;RO=29;RPL=0;RPP=122.441;RPPR=65.983;RPR=55;RUN=1;SAF=55;SAP=122.441;SAR=0;SRF=29;SRP=65.983;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:44:14,30:14:541:30:1132:-88.9303,0,-35.79 0/1:12:2,10:2:76:10:376:-30.5787,0,-3.60231 0/1:28:13,15:13:494:15:575:-43.6635,0,-36.3761 dDocent_Contig_13103 11 . A C 68.1932 . AB=0.0992366;ABP=185.762;AC=1;AF=0.166667;AN=6;AO=13;CIGAR=1X;DP=200;DPB=200;DPRA=3.7971;EPP=31.2394;EPPR=409.076;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=527;QR=7520;RO=187;RPL=0;RPP=31.2394;RPPR=409.076;RPR=13;RUN=1;SAF=13;SAP=31.2394;SAR=0;SRF=187;SRP=409.076;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:131:118,13:118:4755:13:527:-8.3422,0,-388.403 0/0:18:18,0:18:729:0:0:0,-5.41854,-65.9331 0/0:51:51,0:51:2036:0:0:0,-15.3525,-183.425 dDocent_Contig_13104 8 . T C 1022.85 . AB=0.258278;ABP=79.6446;AC=3;AF=0.5;AN=6;AO=39;CIGAR=1X3M;DP=151;DPB=151;DPRA=0;EPP=87.6977;EPPR=204.957;GTI=0;LEN=1;MEANALT=3;MQM=60;MQMR=60;NS=3;NUMALT=4;ODDS=0;PAIRED=0;PAIREDR=0.924731;PAO=0;PQA=0;PQR=0;PRO=0;QA=1489;QR=3638;RO=93;RPL=0;RPP=87.6977;RPPR=204.957;RPR=39;RUN=1;SAF=39;SAP=87.6977;SAR=0;SRF=93;SRP=204.957;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|1:71:51,9,5,5,1:51:2000:9,5,5,1:344,183,203,38:-12.87,0,-161.773,-13.2763,-149.533,-176.25,-11.4729,-147.739,-161.012,-174.457,-25.1063,-161.366,-174.639,-172.846,-189.288 0|1:43:24,0,19,0,0:24:938:0,19,0,0:0,731,0,0:-53.1768,-60.4015,-137.522,0,-77.508,-71.7885,-60.4015,-137.522,-77.508,-137.522,-60.4015,-137.522,-77.508,-137.522,-137.522 0|1:37:18,1,15,0,2:18:700:1,15,0,2:40,575,0,81:-41.7612,-43.8839,-101.109,0,-54.2202,-53.0003,-47.1797,-101.41,-57.5157,-104.705,-40.4984,-94.7298,-50.8352,-98.0253,-97.4232 dDocent_Contig_13106 110 . A G 69.8409 . AB=0.222222;ABP=21.1059;AC=2;AF=0.333333;AN=6;AO=6;CIGAR=1X;DP=31;DPB=31;DPRA=3.375;EPP=16.0391;EPPR=55.1256;GTI=0;LEN=1;MEANALT=1.5;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=198;QR=749;RO=24;RPL=0;RPP=16.0391;RPPR=55.1256;RPR=6;RUN=1;SAF=0;SAP=16.0391;SAR=6;SRF=0;SRP=55.1256;SRR=24;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:15:11,4:11:336:4:130:-7.50562,0,-26.0207 0/1:12:9,2:9:304:2:68:-2.98658,0,-24.2805 0/0:4:4,0:4:109:0:0:0,-1.20412,-10.0802 dDocent_Contig_13107 10 . C A 274.348 . AB=0.205882;ABP=54.1038;AC=3;AF=0.5;AN=6;AO=14;CIGAR=1X;DP=68;DPB=68;DPRA=0;EPP=33.4109;EPPR=120.27;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=561;QR=2165;RO=54;RPL=0;RPP=33.4109;RPPR=120.27;RPR=14;RUN=1;SAF=14;SAP=33.4109;SAR=0;SRF=54;SRP=120.27;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:38:35,3:35:1417:3:123:-0.0256485,0,-116.341 0/1:6:5,1:5:181:1:38:-1.99109,0,-14.831 0/1:24:14,10:14:567:10:400:-29.1348,0,-44.1467 dDocent_Contig_13108 110 . T C 63.3731 . AB=0.25;ABP=11.6962;AC=1;AF=0.25;AN=4;AO=4;CIGAR=1X;DP=21;DPB=21;DPRA=3.2;EPP=11.6962;EPPR=39.9253;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=2;NUMALT=1;ODDS=0;PAIRED=0;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=139;QR=593;RO=17;RPL=0;RPP=11.6962;RPPR=39.9253;RPR=4;RUN=1;SAF=0;SAP=11.6962;SAR=4;SRF=0;SRP=39.9253;SRR=17;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:16:12,4:12:415:4:139:-8.03621,0,-32.8638 0/0:5:5,0:5:178:0:0:0,-1.50515,-16.3686 ./.:.:.:.:.:.:.:. dDocent_Contig_13110 134 . A C 626.831 . AB=0.482143;ABP=3.16541;AC=3;AF=0.5;AN=6;AO=27;CIGAR=1X;DP=56;DPB=56;DPRA=0;EPP=61.6401;EPPR=65.983;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=934;QR=1004;RO=29;RPL=0;RPP=61.6401;RPPR=65.983;RPR=27;RUN=1;SAF=0;SAP=61.6401;SAR=27;SRF=0;SRP=65.983;SRR=29;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:24:14,10:14:484:10:348:-24.4313,0,-36.6648 0/1:9:3,6:3:105:6:204:-15.9841,0,-7.08689 0/1:23:12,11:12:415:11:382:-27.7905,0,-30.7578 dDocent_Contig_13111 29 . G A 137.238 . AB=0.205882;ABP=28.557;AC=1;AF=0.166667;AN=6;AO=8;CIGAR=1X;DP=55;DPB=55;DPRA=4.08333;EPP=20.3821;EPPR=105.07;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=320;QR=1871;RO=47;RPL=0;RPP=20.3821;RPPR=105.07;RPR=8;RUN=1;SAF=8;SAP=20.3821;SAR=0;SRF=47;SRP=105.07;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:34:27,7:27:1067:7:279:-15.2461,0,-86.0819 0/0:6:6,0:6:238:0:0:0,-1.80618,-21.7918 0/0:15:14,1:14:566:1:41:0,-0.420883,-47.1877 dDocent_Contig_13112 20 . G C 86.47 . AB=0.121951;ABP=104.805;AC=2;AF=0.333333;AN=6;AO=10;CIGAR=1X;DP=87;DPB=87;DPRA=8.2;EPP=24.725;EPPR=170.214;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=401;QR=2981;RO=77;RPL=0;RPP=24.725;RPPR=170.214;RPR=10;RUN=1;SAF=10;SAP=24.725;SAR=0;SRF=77;SRP=170.214;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:58:51,7:51:1970:7:279:-8.02104,0,-160.038 0/0:5:5,0:5:186:0:0:0,-1.50515,-17.0947 0/1:24:21,3:21:825:3:122:-4.14777,0,-67.3405 dDocent_Contig_13114 40 . A G 47.5193 . AB=0.230769;ABP=11.1951;AC=1;AF=0.166667;AN=6;AO=3;CIGAR=2X2M1X;DP=29;DPB=29;DPRA=1.625;EPP=9.52472;EPPR=59.4686;GTI=0;LEN=1;MEANALT=1;MQM=41;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=0;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=120;QR=1011;RO=26;RPL=3;RPP=9.52472;RPPR=59.4686;RPR=0;RUN=1;SAF=0;SAP=9.52472;SAR=3;SRF=26;SRP=59.4686;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|0:4:4,0:4:149:0:0:0,-1.20412,-13.7702 0|1:13:10,3:10:391:3:120:-6.57574,0,-31.6345 0|0:12:12,0:12:471:0:0:0,-3.61236,-42.7418 dDocent_Contig_13115 19 . C T 70.3799 . AB=0.111111;ABP=133.057;AC=2;AF=0.333333;AN=6;AO=11;CIGAR=1X;DP=117;DPB=117;DPRA=2.75;EPP=26.8965;EPPR=233.186;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=439;QR=4240;RO=106;RPL=0;RPP=26.8965;RPPR=233.186;RPR=11;RUN=1;SAF=11;SAP=26.8965;SAR=0;SRF=106;SRP=233.186;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:68:60,8:60:2412:8:316:-8.33268,0,-196.752 0/0:18:18,0:18:705:0:0:0,-5.41854,-63.7669 0/1:31:28,3:28:1123:3:123:-2.13286,0,-92.0169 dDocent_Contig_13116 86 . T A 71.1101 . AB=0.214286;ABP=22.8638;AC=2;AF=0.333333;AN=6;AO=6;CIGAR=1X;DP=40;DPB=40;DPRA=1.16667;EPP=16.0391;EPPR=76.8404;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=1.73472e-18;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=204;QR=1163;RO=34;RPL=6;RPP=16.0391;RPPR=76.8404;RPR=0;RUN=1;SAF=6;SAP=16.0391;SAR=0;SRF=34;SRP=76.8404;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:23:20,3:20:683:3:103:-2.68633,0,-54.8659 0/1:5:2,3:2:68:3:101:-7.91858,0,-4.95278 0/0:12:12,0:12:412:0:0:0,-3.61236,-37.4102 dDocent_Contig_13118 9 . A T 68.7381 . AB=0.210526;ABP=16.8392;AC=1;AF=0.166667;AN=6;AO=7;CIGAR=1X;DP=138;DPB=138;DPRA=0;EPP=18.2106;EPPR=287.473;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=59.9924;NS=3;NUMALT=1;ODDS=0;PAIRED=0.285714;PAIREDR=0.862595;PAO=0;PQA=0;PQR=0;PRO=0;QA=273;QR=4997;RO=131;RPL=0;RPP=18.2106;RPPR=287.473;RPR=7;RUN=1;SAF=7;SAP=18.2106;SAR=0;SRF=131;SRP=287.473;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:93:91,2:91:3481:2:78:0,-20.5923,-306.015 0/1:19:15,4:15:566:4:156:-8.69772,0,-45.561 0/0:26:25,1:25:950:1:39:0,-3.93022,-81.9196 dDocent_Contig_13119 7 . A C 799.338 . AB=0.378049;ABP=13.6028;AC=2;AF=0.333333;AN=6;AO=31;CIGAR=1X3M1I4M;DP=85;DPB=88.875;DPRA=13.6667;EPP=70.3259;EPPR=120.27;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=0.870968;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=1194;QR=2112;RO=54;RPL=0;RPP=70.3259;RPPR=120.27;RPR=31;RUN=1;SAF=31;SAP=70.3259;SAR=0;SRF=54;SRP=120.27;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|1:58:36,22:36:1405:22:849:-59.2729,0,-109.264 0|0:3:3,0:3:118:0:0:0,-0.90309,-11.0029 0|1:24:15,9:15:589:9:345:-24.1836,0,-46.1267 dDocent_Contig_13120 11 . T C 1195.5 . AB=0.357143;ABP=17.9004;AC=4;AF=0.666667;AN=6;AO=41;CIGAR=1X;DP=95;DPB=95;DPRA=0;EPP=92.0407;EPPR=120.27;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=6.93889e-18;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=1637;QR=2155;RO=54;RPL=0;RPP=92.0407;RPPR=120.27;RPR=41;RUN=1;SAF=41;SAP=92.0407;SAR=0;SRF=54;SRP=120.27;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:41:17,24:17:688:24:963:-74.6258,0,-49.9056 1/1:11:0,11:0:0:11:428:-38.8712,-3.31133,0 0/1:43:37,6:37:1467:6:246:-9.57583,0,-119.336 dDocent_Contig_13121 23 . G C 608.53 . AB=0.287356;ABP=37.1798;AC=3;AF=0.5;AN=6;AO=25;CIGAR=1X;DP=87;DPB=87;DPRA=0;EPP=57.2971;EPPR=137.642;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=0.96;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=1012;QR=2451;RO=62;RPL=0;RPP=57.2971;RPPR=137.642;RPR=25;RUN=1;SAF=25;SAP=57.2971;SAR=0;SRF=62;SRP=137.642;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:50:40,10:40:1591:10:405:-21.758,0,-128.371 0/1:8:7,1:7:283:1:41:-1.68633,0,-23.4348 0/1:29:15,14:15:577:14:566:-42.5527,0,-43.532 dDocent_Contig_13124 14 . G T 107.698 . AB=0.166667;ABP=43.5445;AC=1;AF=0.166667;AN=6;AO=7;CIGAR=1X;DP=66;DPB=66;DPRA=3.5;EPP=18.2106;EPPR=131.127;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=273;QR=2354;RO=59;RPL=0;RPP=18.2106;RPPR=131.127;RPR=7;RUN=1;SAF=7;SAP=18.2106;SAR=0;SRF=59;SRP=131.127;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:42:35,7:35:1407:7:273:-12.2926,0,-114.24 0/0:5:5,0:5:197:0:0:0,-1.50515,-18.1059 0/0:19:19,0:19:750:0:0:0,-5.71957,-67.8242 dDocent_Contig_13125 7 . A G 337.877 . AB=0.237113;ABP=61.2371;AC=3;AF=0.5;AN=6;AO=23;CIGAR=1X;DP=97;DPB=97;DPRA=0;EPP=52.9542;EPPR=163.699;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=735;QR=2839;RO=74;RPL=0;RPP=52.9542;RPPR=163.699;RPR=23;RUN=1;SAF=23;SAP=52.9542;SAR=0;SRF=74;SRP=163.699;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:61:43,18:43:1654:18:592:-35.2182,0,-130.758 0/1:20:18,2:18:686:2:72:-0.815771,0,-56.0522 0/1:16:13,3:13:499:3:71:-1.80976,0,-40.4411 dDocent_Contig_13126 98 . N C 41.8095 . AB=0;ABP=0;AC=2;AF=1;AN=2;AO=2;CIGAR=1X;DP=2;DPB=2;DPRA=0;EPP=7.35324;EPPR=0;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=0;NS=1;NUMALT=1;ODDS=5.99146;PAIRED=1;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=44;QR=0;RO=0;RPL=2;RPP=7.35324;RPPR=0;RPR=0;RUN=1;SAF=2;SAP=7.35324;SAR=0;SRF=0;SRP=0;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 1/1:2:0,2:0:0:2:44:-4.17984,-0.60206,0 ./.:.:.:.:.:.:.:. ./.:.:.:.:.:.:.:. dDocent_Contig_13127 11 . T C 621.312 . AB=0.352941;ABP=15.7837;AC=3;AF=0.5;AN=6;AO=24;CIGAR=2X;DP=68;DPB=68;DPRA=0;EPP=55.1256;EPPR=98.5551;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=967;QR=1758;RO=44;RPL=0;RPP=55.1256;RPPR=98.5551;RPR=24;RUN=1;SAF=24;SAP=55.1256;SAR=0;SRF=44;SRP=98.5551;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|1:24:20,4:20:798:4:155:-7.09894,0,-64.9132 0|1:27:14,13:14:571:13:528:-39.7387,0,-43.6041 0|1:17:10,7:10:389:7:284:-20.8165,0,-30.2412 dDocent_Contig_13128 23 . G A 109.509 . AB=0.166667;ABP=43.5445;AC=1;AF=0.166667;AN=6;AO=7;CIGAR=1X;DP=50;DPB=50;DPRA=10.5;EPP=18.2106;EPPR=96.3836;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=275;QR=1713;RO=43;RPL=0;RPP=18.2106;RPPR=96.3836;RPR=7;RUN=1;SAF=7;SAP=18.2106;SAR=0;SRF=43;SRP=96.3836;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:42:35,7:35:1402:7:275:-12.4731,0,-113.794 0/0:1:1,0:1:41:0:0:0,-0.30103,-4.09457 0/0:7:7,0:7:270:0:0:0,-2.10721,-24.6596 dDocent_Contig_13129 23 . G A 31.5322 . AB=0.222222;ABP=9.04217;AC=1;AF=0.166667;AN=6;AO=2;CIGAR=1X;DP=21;DPB=21;DPRA=1.5;EPP=7.35324;EPPR=44.2683;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=81;QR=774;RO=19;RPL=0;RPP=7.35324;RPPR=44.2683;RPR=2;RUN=1;SAF=2;SAP=7.35324;SAR=0;SRF=19;SRP=44.2683;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:10:10,0:10:407:0:0:0,-3.0103,-36.9906 0/0:2:2,0:2:82:0:0:0,-0.60206,-7.77968 0/1:9:7,2:7:285:2:81:-4.97646,0,-23.3151 dDocent_Contig_13131 18 . T C 2334.32 . AB=0.405405;ABP=5.88603;AC=4;AF=0.666667;AN=6;AO=71;CIGAR=1X;DP=96;DPB=96;DPRA=0;EPP=157.185;EPPR=57.2971;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=2872;QR=1016;RO=25;RPL=0;RPP=157.185;RPPR=57.2971;RPR=71;RUN=1;SAF=71;SAP=157.185;SAR=0;SRF=25;SRP=57.2971;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 1/1:59:3,56:3:121:56:2266:-192.813,-6.48078,0 0/1:16:8,8:8:325:8:326:-24.8934,0,-24.8032 0/1:21:14,7:14:570:7:280:-19.2491,0,-45.3203 dDocent_Contig_13133 107 . N C 71.1638 . AB=0;ABP=0;AC=4;AF=1;AN=4;AO=8;CIGAR=1X3I1X2M;DP=12;DPB=21;DPRA=0;EPP=20.3821;EPPR=0;GTI=0;LEN=1;MEANALT=1.5;MQM=10.75;MQMR=0;NS=2;NUMALT=2;ODDS=0;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=86;QR=0;RO=0;RPL=0;RPP=20.3821;RPPR=0;RPR=8;RUN=1;SAF=8;SAP=20.3821;SAR=0;SRF=0;SRP=0;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 1|1:7:0,4,3:0:0:4,3:148,26:-2.52344,-1.20412,0,-1.76335,-0.378777,-0.860264 .:.:.:.:.:.:.:. 1|1:5:0,0,5:0:0:0,5:0,60:-4.26117,-4.26117,-4.26117,-1.50515,-1.50515,0 dDocent_Contig_13134 53 . T G 147.26 . AB=0.15873;ABP=66.7413;AC=2;AF=0.333333;AN=6;AO=10;CIGAR=1X;DP=69;DPB=69;DPRA=5.25;EPP=24.725;EPPR=131.127;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=0.915254;PAO=0;PQA=0;PQR=0;PRO=0;QA=405;QR=2356;RO=59;RPL=10;RPP=24.725;RPPR=131.127;RPR=0;RUN=1;SAF=10;SAP=24.725;SAR=0;SRF=59;SRP=131.127;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:46:40,6:40:1587:6:244:-8.49145,0,-129.221 0/0:6:6,0:6:242:0:0:0,-1.80618,-22.1575 0/1:17:13,4:13:527:4:161:-9.75739,0,-42.6592 dDocent_Contig_13136 13 . T A 602.898 . AB=0.136842;ABP=111.835;AC=1;AF=0.166667;AN=6;AO=13;CIGAR=3M1X3M;DP=113;DPB=120;DPRA=0;EPP=31.2394;EPPR=113.755;GTI=0;LEN=1;MEANALT=3;MQM=60;MQMR=60;NS=3;NUMALT=4;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=501;QR=2014;RO=51;RPL=0;RPP=31.2394;RPPR=113.755;RPR=13;RUN=1;SAF=13;SAP=31.2394;SAR=0;SRF=51;SRP=113.755;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|0:67:28,17,13,6,3:28:1100:17,13,6,3:656,489,220,120:-28.0041,0,-85.3981,-7.38117,-61.4829,-93.9869,-18.5361,-72.6302,-80.0138,-107.253,-26.5393,-80.6279,-88.0122,-99.1711,-116.156 0|1:28:15,3,0,0,10:15:596:3,0,0,10:109,0,0,381:-26.8035,-24.2572,-72.4315,-31.3189,-73.3346,-80.4058,-31.3189,-73.3346,-80.4058,-80.4058,0,-42.0875,-49.152,-49.152,-46.1417 0|0:18:8,5,5,0,0:8:318:5,5,0,0:188,195,0,0:-11.0051,-4.29604,-29.0137,0,-17.1779,-24.7752,-13.4134,-30.5189,-26.2803,-39.6456,-13.4134,-30.5189,-26.2803,-39.6456,-39.6456 dDocent_Contig_13137 29 . A G 565.889 . AB=0.175439;ABP=159.471;AC=2;AF=0.333333;AN=6;AO=30;CIGAR=1X6M;DP=210;DPB=215.714;DPRA=2.19231;EPP=68.1545;EPPR=361.303;GTI=0;LEN=1;MEANALT=2.5;MQM=60;MQMR=60;NS=3;NUMALT=2;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=1190;QR=6471;RO=165;RPL=0;RPP=68.1545;RPPR=361.303;RPR=30;RUN=1;SAF=30;SAP=68.1545;SAR=0;SRF=165;SRP=361.303;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|1:155:116,10,25:116:4559:10,25:394,990:-46.5483,-49.0532,-421.017,0,-342.56,-367.449 0|1:16:11,0,5:11:411:0,5:0,200:-13.5634,-16.8748,-50.5016,0,-34.0182,-32.5131 0|0:39:38,0,0:38:1501:0,0:0,0:0,-11.4391,-134.938,-11.4391,-134.938,-134.938 dDocent_Contig_13138 43 . C T 52.7462 . AB=0.138889;ABP=43.7857;AC=2;AF=0.333333;AN=6;AO=6;CIGAR=1X;DP=54;DPB=54;DPRA=0;EPP=16.0391;EPPR=107.241;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=241;QR=1917;RO=48;RPL=0;RPP=16.0391;RPPR=107.241;RPR=6;RUN=1;SAF=6;SAP=16.0391;SAR=0;SRF=48;SRP=107.241;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:18:17,1:17:667:1:41:0,-1.32397,-56.2652 0/1:13:10,3:10:401:3:118:-7.08819,0,-32.5365 0/1:23:21,2:21:849:2:82:-0.855988,0,-69.7989 dDocent_Contig_13140 86 . A G 189.515 . AB=0.0689655;ABP=49.8093;AC=0;AF=0;AN=6;AO=2;CIGAR=1X3M1X2M2I3M;DP=53;DPB=53.6;DPRA=2.9;EPP=7.35324;EPPR=87.6977;GTI=0;LEN=1;MEANALT=2;MQM=60;MQMR=60;NS=3;NUMALT=2;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=65;QR=1425;RO=39;RPL=2;RPP=7.35324;RPPR=87.6977;RPR=0;RUN=1;SAF=2;SAP=7.35324;SAR=0;SRF=39;SRP=87.6977;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|0:29:20,2,7:20:740:2,7:65,246:-14.0215,-14.8019,-74.7539,0,-55.3391,-58.4739 0|0:10:9,0,0:9:332:0,0:0,0:0,-2.70927,-29.8706,-2.70927,-29.8706,-29.8706 0|0:14:10,0,4:10:353:0,4:0,137:-8.45289,-11.4632,-40.2169,0,-29.0991,-27.895 dDocent_Contig_13142 15 . G A 167.125 . AB=0.157895;ABP=80.269;AC=2;AF=0.333333;AN=6;AO=12;CIGAR=1X;DP=100;DPB=100;DPRA=1.58333;EPP=29.068;EPPR=194.1;GTI=0;LEN=1;MEANALT=1;MQM=54.5;MQMR=58.5227;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=472;QR=3347;RO=88;RPL=0;RPP=29.068;RPPR=194.1;RPR=12;RUN=1;SAF=12;SAP=29.068;SAR=0;SRF=88;SRP=194.1;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:52:44,8:44:1686:8:315:-12.9815,0,-136.071 0/0:24:24,0:24:880:0:0:0,-7.22472,-79.5024 0/1:24:20,4:20:781:4:157:-7.25391,0,-62.5284 dDocent_Contig_13143 9 . A G 219.236 . AB=0.244444;ABP=28.5372;AC=2;AF=0.333333;AN=6;AO=11;CIGAR=1X;DP=50;DPB=50;DPRA=4.5;EPP=26.8965;EPPR=87.6977;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=425;QR=1484;RO=39;RPL=0;RPP=26.8965;RPPR=87.6977;RPR=11;RUN=1;SAF=11;SAP=26.8965;SAR=0;SRF=39;SRP=87.6977;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:36:28,8:28:1071:8:308:-17.2453,0,-85.8588 0/1:9:6,3:6:231:3:117:-8.20111,0,-18.4486 0/0:5:5,0:5:182:0:0:0,-1.50515,-16.7331 dDocent_Contig_13146 39 . G A 227.493 . AB=0.137255;ABP=61.2994;AC=3;AF=0.5;AN=6;AO=11;CIGAR=1X;DP=73;DPB=73;DPRA=1.52778;EPP=26.8965;EPPR=137.642;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=432;QR=2461;RO=62;RPL=0;RPP=26.8965;RPPR=137.642;RPR=11;RUN=1;SAF=11;SAP=26.8965;SAR=0;SRF=62;SRP=137.642;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:51:44,7:44:1746:7:275:-9.7649,0,-142.008 0/0:18:18,0:18:715:0:0:0,-5.41854,-64.6751 1/1:4:0,4:0:0:4:157:-14.5072,-1.20412,0 dDocent_Contig_13147 15 . T A 369.455 . AB=0.130435;ABP=57.5803;AC=0;AF=0;AN=6;AO=6;CIGAR=1X2M1X;DP=92;DPB=92;DPRA=0;EPP=16.0391;EPPR=131.127;GTI=0;LEN=1;MEANALT=3;MQM=60;MQMR=60;NS=3;NUMALT=3;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=239;QR=2341;RO=59;RPL=0;RPP=16.0391;RPPR=131.127;RPR=6;RUN=1;SAF=6;SAP=16.0391;SAR=0;SRF=59;SRP=131.127;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|0:30:18,0,8,4:18:713:0,8,4:0,301,151:-19.237,-24.6556,-83.3513,0,-58.6992,-56.291,-12.2813,-70.979,-46.3287,-69.7749 0|0:46:29,6,7,4:29:1152:6,7,4:239,267,130:-13.172,-2.20796,-95.2687,0,-75.1794,-92.7544,-11.4299,-86.5948,-84.382,-105.072 0|0:16:12,0,4,0:12:476:0,4,0:0,161,0:-10.0584,-13.6708,-52.8497,0,-39.5795,-38.3754,-13.6708,-52.8497,-39.5795,-52.8497 dDocent_Contig_13148 114 . T C 288.654 . AB=0.454545;ABP=3.60252;AC=3;AF=0.5;AN=6;AO=15;CIGAR=1X;DP=33;DPB=33;DPRA=0;EPP=35.5824;EPPR=42.0968;GTI=0;LEN=1;MEANALT=1;MQM=56.8;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=486;QR=606;RO=18;RPL=0;RPP=35.5824;RPPR=42.0968;RPR=15;RUN=1;SAF=0;SAP=35.5824;SAR=15;SRF=0;SRP=42.0968;SRR=18;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:4:2,2:2:63:2:61:-4.58964,0,-4.77965 0/1:15:10,5:10:333:5:166:-10.3864,0,-25.7781 0/1:14:6,8:6:210:8:259:-19.4117,0,-15.028 dDocent_Contig_13149 9 . A T 490.943 . AB=0.328125;ABP=19.4321;AC=2;AF=0.333333;AN=6;AO=21;CIGAR=1X;DP=73;DPB=73;DPRA=3.55556;EPP=48.6112;EPPR=115.927;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=791;QR=1983;RO=52;RPL=0;RPP=48.6112;RPPR=115.927;RPR=21;RUN=1;SAF=21;SAP=48.6112;SAR=0;SRF=52;SRP=115.927;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:28:15,13:15:573:13:500:-36.9189,0,-43.483 0/0:9:9,0:9:345:0:0:0,-2.70927,-31.4083 0/1:36:28,8:28:1065:8:291:-15.6983,0,-85.3197 dDocent_Contig_13150 31 . G A 1190.45 . AB=0.0727273;ABP=90.2245;AC=0;AF=0;AN=6;AO=4;CIGAR=1M2I1M1X1M1I2M;DP=78;DPB=101;DPRA=0;EPP=11.6962;EPPR=72.4974;GTI=0;LEN=1;MEANALT=3;MQM=60;MQMR=60;NS=3;NUMALT=2;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=161;QR=1276;RO=32;RPL=0;RPP=11.6962;RPPR=72.4974;RPR=4;RUN=1;SAF=4;SAP=11.6962;SAR=0;SRF=32;SRP=72.4974;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|0:55:17,4,33:17:677:4,33:161,1301:-101.912,-93.7593,-148.305,0,-42.4752,-45.8113 0|0:3:1,0,2:1:40:0,2:0,80:-6.6887,-6.98973,-10.2848,0,-3.69465,-3.09259 0|0:20:14,0,6:14:559:0,6:0,240:-15.9554,-20.1698,-66.2098,0,-46.4393,-44.6331 dDocent_Contig_13151 95 . G A 118.58 . AB=0.269231;ABP=15.0369;AC=2;AF=0.333333;AN=6;AO=7;CIGAR=1X;DP=29;DPB=29;DPRA=4.33333;EPP=18.2106;EPPR=50.7827;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=239;QR=751;RO=22;RPL=7;RPP=18.2106;RPPR=50.7827;RPR=0;RUN=1;SAF=7;SAP=18.2106;SAR=0;SRF=22;SRP=50.7827;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:18:12,6:12:403:6:205:-13.3667,0,-31.1759 0/0:3:3,0:3:105:0:0:0,-0.90309,-9.79616 0/1:8:7,1:7:243:1:34:-0.990671,0,-19.8006 dDocent_Contig_13152 27 . C A 222.42 . AB=0.164706;ABP=86.0116;AC=2;AF=0.333333;AN=6;AO=14;CIGAR=1X;DP=96;DPB=96;DPRA=3.86364;EPP=33.4109;EPPR=181.071;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=0.853659;PAO=0;PQA=0;PQR=0;PRO=0;QA=562;QR=3312;RO=82;RPL=0;RPP=33.4109;RPPR=181.071;RPR=14;RUN=1;SAF=14;SAP=33.4109;SAR=0;SRF=82;SRP=181.071;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:40:36,4:36:1448:4:159:-2.65055,0,-118.522 0/0:11:11,0:11:447:0:0:0,-3.31133,-40.5855 0/1:45:35,10:35:1417:10:403:-23.0831,0,-114.232 dDocent_Contig_13153 26 . A C 3163.4 . AB=0.0555556;ABP=126.543;AC=0;AF=0;AN=6;AO=4;CIGAR=9M1X2M1X5M;DP=169;DPB=169.333;DPRA=0;EPP=11.6962;EPPR=124.613;GTI=0;LEN=1;MEANALT=3;MQM=60;MQMR=60;NS=3;NUMALT=3;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=152;QR=2211;RO=56;RPL=0;RPP=11.6962;RPPR=124.613;RPR=4;RUN=1;SAF=4;SAP=11.6962;SAR=0;SRF=56;SRP=124.613;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|0:97:29,4,0,64:29:1149:4,0,64:161,0,2585:-204.375,-199.836,-293.205,-213.105,-294.409,-307.678,0,-81.2996,-94.5695,-75.3036 0|0:19:4,2,1,12:4:153:2,1,12:67,40,485:-38.8191,-34.6085,-46.5555,-36.7277,-43.8624,-48.9782,0,-7.15945,-9.26895,-8.95641 0|0:53:23,0,3,26:23:909:0,3,26:0,112,1039:-78.6688,-85.5925,-160.396,-76.4259,-151.228,-150.325,0,-74.8191,-65.6524,-66.9924 dDocent_Contig_13154 98 . N C 82.211 . AB=0;ABP=0;AC=2;AF=1;AN=2;AO=3;CIGAR=7X;DP=3;DPB=3;DPRA=0;EPP=9.52472;EPPR=0;GTI=0;LEN=1;MEANALT=1;MQM=31;MQMR=0;NS=1;NUMALT=1;ODDS=6.68461;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=104;QR=0;RO=0;RPL=0;RPP=9.52472;RPPR=0;RPR=3;RUN=1;SAF=3;SAP=9.52472;SAR=0;SRF=0;SRP=0;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 1|1:3:0,3:0:0:3:104:-8.22056,-0.90309,0 .:.:.:.:.:.:.:. .:.:.:.:.:.:.:. dDocent_Contig_13155 25 . C T 76.9224 . AB=0.112245;ABP=130.994;AC=2;AF=0.333333;AN=6;AO=11;CIGAR=1X;DP=103;DPB=103;DPRA=9.8;EPP=26.8965;EPPR=202.786;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=57.6087;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=444;QR=3699;RO=92;RPL=0;RPP=26.8965;RPPR=202.786;RPR=11;RUN=1;SAF=11;SAP=26.8965;SAR=0;SRF=92;SRP=202.786;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:74:66,8:66:2656:8:325:-7.34284,0,-210.2 0/0:5:5,0:5:200:0:0:0,-1.50515,-18.3795 0/1:24:21,3:21:843:3:119:-3.87029,0,-68.9593 dDocent_Contig_13158 72 . A T 144.887 . AB=0.210526;ABP=16.8392;AC=4;AF=0.666667;AN=6;AO=6;CIGAR=1X;DP=21;DPB=21;DPRA=0;EPP=16.0391;EPPR=35.5824;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=237;QR=517;RO=15;RPL=6;RPP=16.0391;RPPR=35.5824;RPR=0;RUN=1;SAF=6;SAP=16.0391;SAR=0;SRF=15;SRP=35.5824;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:8:5,3:5:185:3:115:-8.31679,0,-14.601 0/1:11:10,1:10:332:1:41:-0.783237,0,-26.8847 1/1:2:0,2:0:0:2:81:-7.68573,-0.60206,0 dDocent_Contig_13159 52 . A G 291.263 . AB=0.307692;ABP=19.7139;AC=3;AF=0.5;AN=6;AO=16;CIGAR=1M1D9M1X3M;DP=52;DPB=51;DPRA=0;EPP=37.7539;EPPR=72.4974;GTI=0;LEN=1;MEANALT=2.33333;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=542;QR=1175;RO=32;RPL=0;RPP=37.7539;RPPR=72.4974;RPR=16;RUN=1;SAF=16;SAP=37.7539;SAR=0;SRF=32;SRP=72.4974;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|1:29:19,8:19:688:8:284:-17.4937,0,-53.8443 0|1:6:3,3:3:111:3:89:-6.497,0,-8.54705 0|1:17:10,5:10:376:5:169:-10.6585,0,-29.2986 dDocent_Contig_13160 16 . T C 207.611 . AB=0.238095;ABP=28.0339;AC=2;AF=0.333333;AN=6;AO=12;CIGAR=1X;DP=77;DPB=77;DPRA=0;EPP=29.068;EPPR=119.301;GTI=0;LEN=1;MEANALT=1;MQM=58.6667;MQMR=57.5846;NS=3;NUMALT=1;ODDS=3.46945e-18;PAIRED=0.916667;PAIREDR=0.707692;PAO=0;PQA=0;PQR=0;PRO=0;QA=485;QR=2613;RO=65;RPL=0;RPP=29.068;RPPR=144.156;RPR=12;RUN=1;SAF=12;SAP=29.068;SAR=0;SRF=62;SRP=119.301;SRR=3;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:35:33,2:33:1335:2:82:0,-2.75637,-112.401 0/1:20:16,4:16:646:4:162:-8.94636,0,-52.3678 0/1:22:16,6:16:632:6:241:-15.3376,0,-48.0035 dDocent_Contig_13161 22 . A C 828.544 . AB=0.056338;ABP=245.787;AC=1;AF=0.166667;AN=6;AO=8;CIGAR=1X3M7D1X;DP=142;DPB=137.333;DPRA=0;EPP=20.3821;EPPR=220.158;GTI=0;LEN=1;MEANALT=2.33333;MQM=60;MQMR=60;NS=3;NUMALT=2;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=307;QR=3886;RO=100;RPL=0;RPP=20.3821;RPPR=220.158;RPR=8;RUN=1;SAF=8;SAP=20.3821;SAR=0;SRF=100;SRP=220.158;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|0:85:54,3,26:54:2096:3,26:119,1044:-69.8683,-76.3262,-247.639,0,-162.514,-164.484 0|1:15:11,4,0:11:431:4,0:150,0:-9.34966,0,-34.6299,-12.661,-35.834,-48.1158 0|0:42:35,1,6:35:1359:1,6:38,239:-9.15937,-16.5815,-127.938,0,-108.558,-109.868 dDocent_Contig_13162 38 . T A 87.7571 . AB=0.181818;ABP=32.0291;AC=3;AF=0.5;AN=6;AO=6;CIGAR=1X;DP=33;DPB=33;DPRA=0;EPP=16.0391;EPPR=61.6401;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=242;QR=1050;RO=27;RPL=0;RPP=16.0391;RPPR=61.6401;RPR=6;RUN=1;SAF=6;SAP=16.0391;SAR=0;SRF=27;SRP=61.6401;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:17:13,4:13:498:4:160:-9.66541,0,-40.04 0/1:11:10,1:10:388:1:41:-0.783237,0,-31.9629 0/1:5:4,1:4:164:1:41:-2.58942,0,-13.6447 dDocent_Contig_13163 28 . C A 51.7542 . AB=0.133333;ABP=55.5599;AC=1;AF=0.166667;AN=6;AO=6;CIGAR=1X;DP=86;DPB=86;DPRA=2.19512;EPP=16.0391;EPPR=176.728;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=221;QR=3103;RO=80;RPL=0;RPP=16.0391;RPPR=176.728;RPR=6;RUN=1;SAF=6;SAP=16.0391;SAR=0;SRF=80;SRP=176.728;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:45:39,6:39:1506:6:221:-6.69829,0,-122.257 0/0:9:9,0:9:353:0:0:0,-2.70927,-32.1323 0/0:32:32,0:32:1244:0:0:0,-9.63296,-112.25 dDocent_Contig_13164 7 . A G 224.74 . AB=0.263158;ABP=12.2676;AC=1;AF=0.166667;AN=6;AO=5;CIGAR=1X3M1X2M1X1M1X1M1X;DP=31;DPB=31;DPRA=0;EPP=13.8677;EPPR=42.0968;GTI=0;LEN=1;MEANALT=2;MQM=21;MQMR=60;NS=3;NUMALT=2;ODDS=0;PAIRED=0;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=193;QR=690;RO=18;RPL=0;RPP=13.8677;RPPR=42.0968;RPR=5;RUN=1;SAF=5;SAP=13.8677;SAR=0;SRF=18;SRP=42.0968;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|0:12:7,0,5:7:266:0,5:0,197:-14.4929,-16.6001,-38.4048,0,-22.1925,-20.6873 1|0:5:0,4,1:0:0:4,1:153,40:-9.86597,-3.69465,-2.49053,-6.5328,0,-6.23177 0|0:14:11,1,2:11:424:1,2:40,82:-3.59016,-5.38404,-39.8784,0,-33.4076,-34.375 dDocent_Contig_13166 7 . A T 7539.02 . AB=0.0629771;ABP=872.279;AC=0;AF=0;AN=6;AO=33;CIGAR=1X1M2X7M1X;DP=524;DPB=524.083;DPRA=0;EPP=74.6689;EPPR=83.5666;GTI=0;LEN=1;MEANALT=18;MQM=60;MQMR=60;NS=3;NUMALT=9;ODDS=0;PAIRED=0.878788;PAIREDR=0.804878;PAO=0.222222;PQA=8.66667;PQR=0;PRO=0;QA=1273;QR=1606;RO=41;RPL=0;RPP=74.6689;RPPR=92.0407;RPR=33;RUN=1;SAF=33;SAP=74.6689;SAR=0;SRF=40;SRP=83.5666;SRR=1;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|0:355:18,5,10,24,13,88,18,11,115,8:18:699:5,10,24,13,88,18,11,115,8:192,382,927,519,3449,704,421,4438,318:-585.005,-574.665,-630.592,-559.375,-601.049,-613.798,-514.288,-555.961,-540.671,-564.496,-547.677,-589.35,-574.061,-528.973,-601.196,-306.817,-348.491,-333.201,-288.114,-321.503,-337.76,-532.541,-574.215,-558.925,-513.838,-547.227,-306.368,-584.556,-556.088,-597.762,-582.472,-537.385,-570.774,-329.915,-555.638,-610.21,-226.174,-267.848,-252.558,-207.471,-240.859,0,-225.724,-249.271,-248.988,-564.247,-605.92,-590.631,-545.543,-578.932,-338.073,-563.797,-587.344,-257.43,-619.271 0|0:60:18,4,5,2,0,3,4,2,13,5:18:707:4,5,2,0,3,4,2,13,5:154,181,77,0,117,159,81,498,198:-35.445,-28.2193,-85.1681,-26.0914,-71.5994,-82.7381,-34.5411,-80.0499,-77.9211,-92.0919,-40.8635,-86.3722,-84.2433,-92.6939,-99.0162,-31.2457,-76.7546,-74.6258,-83.0763,-89.3986,-88.4955,-27.7715,-73.2807,-71.1519,-79.6024,-85.9247,-76.3071,-84.7206,-34.4651,-79.9739,-77.8451,-86.2957,-92.618,-83.0004,-79.5265,-92.0159,0,-45.5091,-43.3809,-51.8308,-58.153,-48.5354,-45.0614,-51.7548,-54.2396,-24.5665,-70.0758,-67.9471,-76.3976,-82.7199,-73.1022,-69.6283,-76.3216,-41.8566,-81.2148 0|0:109:5,4,0,7,7,5,4,12,37,6:5:200:4,0,7,7,5,4,12,37,6:146,0,269,274,193,162,472,1446,244:-138.974,-129.234,-144.506,-140.479,-145.71,-156.955,-118.396,-123.626,-134.872,-132.765,-117.95,-123.181,-134.426,-112.343,-132.319,-124.63,-129.86,-141.106,-119.022,-118.576,-139.6,-127.12,-132.351,-143.596,-121.513,-121.067,-127.747,-142.392,-102.305,-107.535,-118.781,-96.6974,-96.2515,-102.931,-105.422,-115.168,-21.6984,-26.9298,-38.1747,-16.0914,-15.6453,-22.3249,-24.8154,0,-27.0366,-120.352,-125.582,-136.828,-114.744,-114.299,-120.978,-123.469,-98.653,-18.0466,-135.022 dDocent_Contig_13167 20 . C T 113.643 . AB=0.193548;ABP=28.2974;AC=1;AF=0.166667;AN=6;AO=9;CIGAR=1X;DP=76;DPB=76;DPRA=7.1;EPP=14.8328;EPPR=148.499;GTI=0;LEN=1;MEANALT=1;MQM=55;MQMR=60;NS=3;NUMALT=1;ODDS=3.46945e-18;PAIRED=0;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=365;QR=2679;RO=67;RPL=0;RPP=22.5536;RPPR=148.499;RPR=9;RUN=1;SAF=8;SAP=14.8328;SAR=1;SRF=67;SRP=148.499;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:40:37,3:37:1480:3:119:0,-3.00048,-124.404 0/0:5:5,0:5:202:0:0:0,-1.50515,-18.5619 0/1:31:25,6:25:997:6:246:-13.1882,0,-80.6923 dDocent_Contig_13168 12 . C A 133.986 . 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N C 1315.51 . AB=0;ABP=0;AC=6;AF=1;AN=6;AO=45;CIGAR=1X;DP=45;DPB=45;DPRA=0;EPP=100.727;EPPR=0;GTI=0;LEN=1;MEANALT=1;MQM=58.1333;MQMR=0;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=1449;QR=0;RO=0;RPL=0;RPP=100.727;RPPR=0;RPR=45;RUN=1;SAF=0;SAP=100.727;SAR=45;SRF=0;SRP=0;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 1/1:15:0,15:0:0:15:478:-43.3265,-4.51545,0 1/1:8:0,8:0:0:8:258:-23.5358,-2.40824,0 1/1:22:0,22:0:0:22:713:-64.2114,-6.62266,0 dDocent_Contig_13170 26 . T C 350.012 . AB=0.2;ABP=14.7363;AC=1;AF=0.166667;AN=6;AO=3;CIGAR=3M1I2M1X3M1I5M;DP=159;DPB=164.214;DPRA=0;EPP=9.52472;EPPR=215.815;GTI=0;LEN=1;MEANALT=4;MQM=25;MQMR=60;NS=3;NUMALT=6;ODDS=0;PAIRED=0;PAIREDR=0.663265;PAO=0;PQA=0;PQR=0;PRO=0;QA=75;QR=3864;RO=98;RPL=0;RPP=9.52472;RPPR=215.815;RPR=3;RUN=1;SAF=3;SAP=9.52472;SAR=0;SRF=98;SRP=215.815;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|0:106:65,7,12,0,6,0,16:65:2570:7,12,0,6,0,16:189,286,0,237,0,628:-32.1195,-38.6876,-248.122,-32.5754,-231.098,-240.488,-51.6865,-250.229,-244.101,-263.235,-32.1742,-230.73,-224.601,-243.734,-241.928,-51.6865,-250.229,-244.101,-263.235,-243.734,-263.235,0,-198.589,-192.463,-211.593,-192.092,-211.593,-206.777 0|1:15:8,0,2,3,0,1,0:8:309:0,2,3,0,1,0:0,48,75,0,34,0:-2.60311,-5.01135,-30.458,-1.85084,-27.2978,-26.6958,0,-25.4479,-22.2982,-24.5448,-5.01135,-30.458,-27.2978,-25.4479,-30.458,-2.23885,-27.6988,-24.54,-22.6908,-27.6988,-27.3978,-5.01135,-30.458,-27.2978,-25.4479,-30.458,-27.6988,-30.458 0|0:38:25,0,9,0,0,4,0:25:985:0,9,0,0,4,0:0,201,0,0,160,0:-5.71744,-13.2432,-94.3678,-0.431462,-81.461,-78.7517,-13.2432,-94.3678,-81.461,-94.3678,-13.2432,-94.3678,-81.461,-94.3678,-94.3678,0,-81.1819,-68.2804,-81.1819,-81.1819,-79.9777,-13.2432,-94.3678,-81.461,-94.3678,-94.3678,-81.1819,-94.3678 dDocent_Contig_13171 45 . G T 38.9847 . AB=0.1875;ABP=16.582;AC=1;AF=0.166667;AN=6;AO=3;CIGAR=1X;DP=126;DPB=126;DPRA=0.290909;EPP=9.52472;EPPR=270.101;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=113;QR=4810;RO=123;RPL=0;RPP=9.52472;RPPR=270.101;RPR=3;RUN=1;SAF=3;SAP=9.52472;SAR=0;SRF=123;SRP=270.101;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:80:80,0:80:3143:0:0:0,-24.0824,-282.936 0/1:16:13,3:13:508:3:113:-5.72233,0,-41.2478 0/0:30:30,0:30:1159:0:0:0,-9.0309,-104.586 dDocent_Contig_13172 51 . C G 32.4748 . AB=0.222222;ABP=9.04217;AC=1;AF=0.166667;AN=6;AO=2;CIGAR=1X;DP=21;DPB=21;DPRA=1.5;EPP=7.35324;EPPR=44.2683;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=82;QR=766;RO=19;RPL=2;RPP=7.35324;RPPR=44.2683;RPR=0;RUN=1;SAF=2;SAP=7.35324;SAR=0;SRF=19;SRP=44.2683;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:11:11,0:11:446:0:0:0,-3.31133,-40.496 0/0:1:1,0:1:41:0:0:0,-0.30103,-4.09457 0/1:9:7,2:7:279:2:82:-5.07041,0,-22.771 dDocent_Contig_13173 15 . T C 1172.28 . AB=0.476744;ABP=3.41429;AC=3;AF=0.5;AN=6;AO=41;CIGAR=1X;DP=86;DPB=86;DPRA=0;EPP=92.0407;EPPR=100.727;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=1640;QR=1810;RO=45;RPL=0;RPP=92.0407;RPPR=100.727;RPR=41;RUN=1;SAF=41;SAP=92.0407;SAR=0;SRF=45;SRP=100.727;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:57:27,30:27:1083:30:1198:-90.9378,0,-80.5997 0/1:8:6,2:6:246:2:82:-5.37144,0,-20.1119 0/1:21:12,9:12:481:9:360:-26.4416,0,-37.3172 dDocent_Contig_13174 39 . T G 240.226 . AB=0.333333;ABP=7.35324;AC=3;AF=0.5;AN=6;AO=9;CIGAR=1X;DP=29;DPB=29;DPRA=1.3125;EPP=22.5536;EPPR=46.4397;GTI=0;LEN=1;MEANALT=1;MQM=55;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=0.888889;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=361;QR=792;RO=20;RPL=0;RPP=22.5536;RPPR=46.4397;RPR=9;RUN=1;SAF=9;SAP=22.5536;SAR=0;SRF=20;SRP=46.4397;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:18:12,6:12:482:6:242:-14.4499,0,-38.313 0/0:8:8,0:8:310:0:0:0,-2.40824,-28.2624 1/1:3:0,3:0:0:3:119:-11.0954,-0.90309,0 dDocent_Contig_13175 26 . T C 227.985 . AB=0.5;ABP=3.0103;AC=1;AF=0.166667;AN=6;AO=8;CIGAR=1X;DP=33;DPB=33;DPRA=1.88235;EPP=20.3821;EPPR=57.2971;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=323;QR=953;RO=25;RPL=0;RPP=20.3821;RPPR=57.2971;RPR=8;RUN=1;SAF=8;SAP=20.3821;SAR=0;SRF=25;SRP=57.2971;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:16:16,0:16:604:0:0:0,-4.81648,-54.6914 0/0:1:1,0:1:36:0:0:0,-0.30103,-3.59827 0/1:16:8,8:8:313:8:323:-24.6216,0,-23.7184 dDocent_Contig_13176 107 . N A 119.297 . AB=0;ABP=0;AC=2;AF=1;AN=2;AO=4;CIGAR=1X;DP=4;DPB=4;DPRA=0;EPP=11.6962;EPPR=0;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=0;NS=1;NUMALT=1;ODDS=7.37776;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=129;QR=0;RO=0;RPL=0;RPP=11.6962;RPPR=0;RPR=4;RUN=1;SAF=0;SAP=11.6962;SAR=4;SRF=0;SRP=0;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL ./.:.:.:.:.:.:.:. 1/1:4:0,4:0:0:4:129:-11.9294,-1.20412,0 ./.:.:.:.:.:.:.:. dDocent_Contig_13177 10 . A T 42.0365 . AB=0.133333;ABP=38.0434;AC=1;AF=0.166667;AN=6;AO=12;CIGAR=1X;DP=170;DPB=170;DPRA=0;EPP=29.068;EPPR=346.103;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=477;QR=6333;RO=158;RPL=0;RPP=29.068;RPPR=346.103;RPR=12;RUN=1;SAF=12;SAP=29.068;SAR=0;SRF=158;SRP=346.103;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:120:113,7:113:4535:7:277:0,-10.8244,-382.781 0/0:20:19,1:19:766:1:37:0,-2.32277,-65.5636 0/1:30:26,4:26:1032:4:163:-6.02753,0,-84.1421 dDocent_Contig_13178 30 . T A 3111.54 . AB=0.443182;ABP=10.413;AC=3;AF=0.5;AN=6;AO=117;CIGAR=1X;DP=264;DPB=264;DPRA=0;EPP=257.073;EPPR=322.217;GTI=0;LEN=1;MEANALT=1;MQM=55.3419;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=4607;QR=5651;RO=147;RPL=0;RPP=257.073;RPPR=322.217;RPR=117;RUN=1;SAF=117;SAP=257.073;SAR=0;SRF=147;SRP=322.217;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:167:94,73:94:3607:73:2892:-196.282,0,-274.448 0/1:34:9,25:9:349:25:983:-78.5365,0,-21.5347 0/1:63:44,19:44:1695:19:732:-41.8583,0,-133.835 dDocent_Contig_13179 7 . A T 32.8379 . AB=0.285714;ABP=5.80219;AC=1;AF=0.166667;AN=6;AO=3;CIGAR=1X;DP=39;DPB=39;DPRA=1.125;EPP=9.52472;EPPR=81.1833;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=57.8611;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=0.861111;PAO=0;PQA=0;PQR=0;PRO=0;QA=115;QR=1371;RO=36;RPL=0;RPP=9.52472;RPPR=81.1833;RPR=3;RUN=1;SAF=3;SAP=9.52472;SAR=0;SRF=36;SRP=81.1833;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:20:19,1:19:729:1:39:0,-2.12404,-61.6888 0/1:7:5,2:5:188:2:76:-5.10746,0,-15.1767 0/0:12:12,0:12:454:0:0:0,-3.61236,-41.0664 dDocent_Contig_13180 94 . A T 63.6413 . AB=0;ABP=0;AC=2;AF=1;AN=2;AO=2;CIGAR=1X3M1X;DP=2;DPB=2;DPRA=0;EPP=7.35324;EPPR=0;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=0;NS=1;NUMALT=1;ODDS=5.99146;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=67;QR=0;RO=0;RPL=2;RPP=7.35324;RPPR=0;RPR=0;RUN=1;SAF=2;SAP=7.35324;SAR=0;SRF=0;SRP=0;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 1|1:2:0,2:0:0:2:67:-6.36304,-0.60206,0 .:.:.:.:.:.:.:. .:.:.:.:.:.:.:. dDocent_Contig_13181 9 . A T 89.6549 . AB=0.153846;ABP=30.0702;AC=3;AF=0.5;AN=6;AO=6;CIGAR=1X;DP=41;DPB=41;DPRA=0;EPP=16.0391;EPPR=79.0118;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=1.73472e-18;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=233;QR=1357;RO=35;RPL=0;RPP=16.0391;RPPR=79.0118;RPR=6;RUN=1;SAF=6;SAP=16.0391;SAR=0;SRF=35;SRP=79.0118;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:26:22,4:22:852:4:156:-6.59051,0,-69.1758 1/1:1:0,1:0:0:1:39:-3.89656,-0.30103,0 0/0:14:13,1:13:505:1:38:0,-0.417151,-42.0019 dDocent_Contig_13182 20 . C T 37.5469 . AB=0.285714;ABP=5.80219;AC=1;AF=0.166667;AN=6;AO=2;CIGAR=1X;DP=32;DPB=32;DPRA=0.56;EPP=7.35324;EPPR=68.1545;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=81;QR=1202;RO=30;RPL=0;RPP=7.35324;RPPR=68.1545;RPR=2;RUN=1;SAF=2;SAP=7.35324;SAR=0;SRF=30;SRP=68.1545;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:16:16,0:16:654:0:0:0,-4.81648,-59.192 0/0:9:9,0:9:345:0:0:0,-2.70927,-31.4044 0/1:7:5,2:5:203:2:81:-5.57852,0,-16.5456 dDocent_Contig_13184 8 . T C 2172.66 . AB=0.722772;ABP=46.5472;AC=3;AF=0.5;AN=6;AO=73;CIGAR=1X;DP=101;DPB=101;DPRA=0;EPP=161.528;EPPR=61.6401;GTI=0;LEN=1;MEANALT=1.33333;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=2804;QR=1041;RO=27;RPL=0;RPP=161.528;RPPR=61.6401;RPR=73;RUN=1;SAF=73;SAP=161.528;SAR=0;SRF=27;SRP=61.6401;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:56:15,41:15:580:41:1589:-126.419,0,-35.6848 0/1:3:1,2:1:39:2:69:-5.64823,0,-2.99347 0/1:42:11,30:11:422:30:1146:-90.7075,0,-25.6016 dDocent_Contig_13185 14 . G A 6489.4 . AB=0.787879;ABP=74.2741;AC=4;AF=0.666667;AN=6;AO=195;CIGAR=1X;DP=221;DPB=221;DPRA=0;EPP=426.447;EPPR=59.4686;GTI=0;LEN=1;MEANALT=1;MQM=59.9846;MQMR=60;NS=3;NUMALT=1;ODDS=6.93889e-18;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=7786;QR=1035;RO=26;RPL=0;RPP=426.447;RPPR=59.4686;RPR=195;RUN=1;SAF=195;SAP=426.447;SAR=0;SRF=26;SRP=59.4686;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 1/1:122:5,117:5:205:117:4690:-403.149,-17.8907,0 0/1:28:7,21:7:273:21:829:-66.4933,0,-16.505 0/1:71:14,57:14:557:57:2267:-182.821,0,-29.0973 dDocent_Contig_13186 38 . C G 421.612 . AB=0.367347;ABP=10.4997;AC=2;AF=0.333333;AN=6;AO=18;CIGAR=1X;DP=66;DPB=66;DPRA=1.44118;EPP=42.0968;EPPR=107.241;GTI=0;LEN=1;MEANALT=1;MQM=59.5;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=0;PAIREDR=0.541667;PAO=0;PQA=0;PQR=0;PRO=0;QA=664;QR=1926;RO=48;RPL=0;RPP=42.0968;RPPR=107.241;RPR=18;RUN=1;SAF=18;SAP=42.0968;SAR=0;SRF=48;SRP=107.241;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:32:23,9:23:925:9:334:-20.7672,0,-73.9201 0/0:17:17,0:17:675:0:0:0,-5.11751,-61.0816 0/1:17:8,9:8:326:9:330:-24.9168,0,-24.5924 dDocent_Contig_13187 131 . C A 853.822 . AB=0.393443;ABP=15.0424;AC=3;AF=0.5;AN=6;AO=48;CIGAR=1X;DP=122;DPB=122;DPRA=0;EPP=107.241;EPPR=161.528;GTI=0;LEN=1;MEANALT=1.33333;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=1406;QR=2409;RO=73;RPL=0;RPP=107.241;RPPR=161.528;RPR=48;RUN=1;SAF=0;SAP=107.241;SAR=48;SRF=0;SRP=161.528;SRR=73;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:72:39,32:39:1248:32:923:-61.8926,0,-91.1557 0/1:15:12,3:12:413:3:89:-3.79006,0,-32.9851 0/1:35:22,13:22:748:13:394:-25.2201,0,-57.1009 dDocent_Contig_13188 90 . T G 300.353 . AB=0.25;ABP=13.8677;AC=4;AF=0.666667;AN=6;AO=12;CIGAR=1X;DP=27;DPB=27;DPRA=0;EPP=29.068;EPPR=35.5824;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=428;QR=532;RO=15;RPL=12;RPP=29.068;RPPR=35.5824;RPR=0;RUN=1;SAF=12;SAP=29.068;SAR=0;SRF=15;SRP=35.5824;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:12:10,2:10:356:2:73:-3.31894,0,-28.7692 0/1:8:5,3:5:176:3:104:-7.29457,0,-13.7771 1/1:7:0,7:0:0:7:251:-22.9378,-2.10721,0 dDocent_Contig_13191 23 . G A 1820.53 . AB=0.0447761;ABP=123.608;AC=1;AF=0.166667;AN=6;AO=3;CIGAR=1X1M1X;DP=84;DPB=84;DPRA=0;EPP=9.52472;EPPR=50.7827;GTI=0;LEN=1;MEANALT=2;MQM=60;MQMR=60;NS=3;NUMALT=2;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=121;QR=855;RO=22;RPL=0;RPP=9.52472;RPPR=50.7827;RPR=3;RUN=1;SAF=3;SAP=9.52472;SAR=0;SRF=22;SRP=50.7827;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|0:55:16,1,38:16:619:1,38:41,1493:-117.944,-119.375,-169.908,0,-47.4284,-39.3746 1|0:12:1,2,9:1:40:2,9:80,345:-31.2882,-24.996,-27.6907,-3.29508,0,-3.88089 0|0:17:5,0,12:5:196:0,12:0,479:-38.342,-39.8472,-55.9623,0,-16.5088,-12.8964 dDocent_Contig_13193 42 . C T 630.614 . AB=0.522388;ABP=3.30199;AC=3;AF=0.5;AN=6;AO=35;CIGAR=1X;DP=67;DPB=67;DPRA=0;EPP=79.0118;EPPR=72.4974;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=977;QR=1267;RO=32;RPL=0;RPP=79.0118;RPPR=72.4974;RPR=35;RUN=1;SAF=35;SAP=79.0118;SAR=0;SRF=32;SRP=72.4974;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:37:20,17:20:800:17:463:-30.796,0,-61.1764 0/1:14:8,6:8:307:6:169:-11.2736,0,-23.7726 0/1:16:4,12:4:160:12:345:-26.5147,0,-9.96695 dDocent_Contig_13194 91 . T C 511.901 . AB=0.636364;ABP=8.34028;AC=2;AF=0.333333;AN=6;AO=24;CIGAR=1X;DP=73;DPB=73;DPRA=0;EPP=55.1256;EPPR=109.412;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=814;QR=1703;RO=49;RPL=24;RPP=55.1256;RPPR=109.412;RPR=0;RUN=1;SAF=24;SAP=55.1256;SAR=0;SRF=49;SRP=109.412;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:16:4,12:4:140:12:403:-31.778,0,-8.12845 0/1:17:8,9:8:287:9:308:-22.9349,0,-21.059 0/0:40:37,3:37:1276:3:103:0,-2.43123,-105.533 dDocent_Contig_13195 8 . T C 1893.91 . AB=0.611111;ABP=14.5915;AC=3;AF=0.5;AN=6;AO=66;CIGAR=1X3M;DP=108;DPB=108;DPRA=0;EPP=146.327;EPPR=81.1833;GTI=0;LEN=1;MEANALT=2;MQM=55.4242;MQMR=60;NS=3;NUMALT=2;ODDS=0;PAIRED=0.636364;PAIREDR=0.555556;PAO=0;PQA=0;PQR=0;PRO=0;QA=2527;QR=1407;RO=36;RPL=0;RPP=146.327;RPPR=81.1833;RPR=66;RUN=1;SAF=66;SAP=146.327;SAR=0;SRF=36;SRP=81.1833;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|1:62:23,0,35:23:905:0,35:0,1343:-102.093,-109.016,-183.47,0,-74.4582,-63.9221 0|1:20:8,0,12:8:307:0,12:0,464:-35.6745,-38.0828,-63.2828,0,-25.5831,-21.9708 0|1:26:5,2,19:5:195:2,19:76,720:-57.1465,-53.979,-69.409,0,-11.4448,-10.3784 dDocent_Contig_13196 54 . G A 58.4372 . AB=0.25;ABP=9.52472;AC=1;AF=0.166667;AN=6;AO=3;CIGAR=1X;DP=38;DPB=38;DPRA=0.923077;EPP=9.52472;EPPR=79.0118;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=121;QR=1365;RO=35;RPL=3;RPP=9.52472;RPPR=79.0118;RPR=0;RUN=1;SAF=3;SAP=9.52472;SAR=0;SRF=35;SRP=79.0118;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:12:12,0:12:464:0:0:0,-3.61236,-42.1045 0/0:14:14,0:14:545:0:0:0,-4.21442,-49.3885 0/1:12:9,3:9:356:3:121:-7.66763,0,-28.7873 dDocent_Contig_13197 16 . A G 70.032 . AB=0.137255;ABP=61.2994;AC=2;AF=0.333333;AN=6;AO=7;CIGAR=1X;DP=117;DPB=117;DPRA=0.386364;EPP=18.2106;EPPR=239.701;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=279;QR=4345;RO=109;RPL=0;RPP=18.2106;RPPR=239.701;RPR=7;RUN=1;SAF=7;SAP=18.2106;SAR=0;SRF=109;SRP=239.701;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:66:65,0:65:2610:0:0:0,-19.5669,-234.756 0/1:19:16,3:16:621:3:119:-5.37544,0,-50.5052 0/1:32:28,4:28:1114:4:160:-5.15047,0,-90.9158 dDocent_Contig_13198 33 . A T 187.129 . AB=0.4;ABP=4.74748;AC=2;AF=0.333333;AN=6;AO=8;CIGAR=1X;DP=28;DPB=28;DPRA=1.25;EPP=20.3821;EPPR=46.4397;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=306;QR=762;RO=20;RPL=0;RPP=20.3821;RPPR=46.4397;RPR=8;RUN=1;SAF=8;SAP=20.3821;SAR=0;SRF=20;SRP=46.4397;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:8:8,0:8:303:0:0:0,-2.40824,-27.6283 0/1:9:3,6:3:105:6:240:-19.2665,0,-7.08517 0/1:11:9,2:9:354:2:66:-2.95338,0,-28.9095 dDocent_Contig_13199 27 . G A 182.959 . AB=0.204082;ABP=40.2799;AC=2;AF=0.333333;AN=6;AO=11;CIGAR=1X;DP=62;DPB=62;DPRA=0;EPP=26.8965;EPPR=55.1682;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=56.5098;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=0.843137;PAO=0;PQA=0;PQR=0;PRO=0;QA=425;QR=1946;RO=51;RPL=0;RPP=26.8965;RPPR=113.755;RPR=11;RUN=1;SAF=11;SAP=26.8965;SAR=0;SRF=43;SRP=55.1682;SRR=8;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:31:25,6:25:986:6:244:-13.0069,0,-76.3629 0/0:13:12,1:12:452:1:27:0,-1.21361,-38.3084 0/1:18:14,4:14:508:4:154:-8.81178,0,-40.6201 dDocent_Contig_13200 19 . C T 341.751 . AB=0.168;ABP=122.684;AC=3;AF=0.5;AN=6;AO=21;CIGAR=1X;DP=125;DPB=125;DPRA=0;EPP=48.6112;EPPR=228.843;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=846;QR=4136;RO=104;RPL=0;RPP=48.6112;RPPR=228.843;RPR=21;RUN=1;SAF=21;SAP=48.6112;SAR=0;SRF=104;SRP=228.843;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:71:56,15:56:2242:15:601:-33.0542,0,-180.576 0/1:30:27,3:27:1076:3:122:-2.34159,0,-88.1006 0/1:24:21,3:21:818:3:123:-4.24007,0,-66.7023 dDocent_Contig_13201 147 . A T 281.635 . AB=0.216667;ABP=44.8473;AC=4;AF=0.666667;AN=6;AO=14;CIGAR=1M1D2M1X1M2X2M1X2M3I2M;DP=61;DPB=62.8;DPRA=0;EPP=33.4109;EPPR=100.727;GTI=0;LEN=1;MEANALT=1.66667;MQM=59.8571;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=0.857143;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=538;QR=1710;RO=45;RPL=0;RPP=33.4109;RPPR=100.727;RPR=14;RUN=1;SAF=0;SAP=33.4109;SAR=14;SRF=0;SRP=100.727;SRR=45;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|1:39:30,9:30:1131:9:348:-19.9396,0,-90.3372 1|1:1:0,1:0:0:1:38:-3.79727,-0.30103,0 0|1:21:15,4:15:579:4:152:-7.94878,0,-46.3457 dDocent_Contig_13202 115 . T A 706.528 . AB=0.666667;ABP=17.4868;AC=4;AF=0.666667;AN=6;AO=60;CIGAR=4X2M1X3M2X4M;DP=81;DPB=81.0625;DPRA=0;EPP=133.299;EPPR=42.0968;GTI=0;LEN=1;MEANALT=1.66667;MQM=19.9;MQMR=60;NS=3;NUMALT=2;ODDS=3.46945e-18;PAIRED=0;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=1194;QR=594;RO=18;RPL=0;RPP=133.299;RPPR=42.0968;RPR=60;RUN=1;SAF=60;SAP=133.299;SAR=0;SRF=0;SRP=42.0968;SRR=18;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|1:36:10,2,24:10:330:2,24:42,486:-27.0472,-27.4178,-53.5417,0,-24.1904,-19.5799 1|1:21:0,0,20:0:0:0,20:0,384:-29.3211,-29.3211,-29.3211,-6.0206,-6.0206,0 0|1:24:8,0,16:8:264:0,16:0,324:-17.8073,-20.2156,-41.6129,0,-21.6748,-16.8584 dDocent_Contig_13203 14 . T C 228.229 . AB=0.233645;ABP=68.9459;AC=3;AF=0.5;AN=6;AO=25;CIGAR=2X1M1X1M1X3M1X;DP=107;DPB=107;DPRA=0;EPP=57.2971;EPPR=178.9;GTI=0;LEN=1;MEANALT=1.33333;MQM=26.68;MQMR=60;NS=3;NUMALT=1;ODDS=6.93889e-18;PAIRED=0;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=1001;QR=3148;RO=81;RPL=0;RPP=57.2971;RPPR=178.9;RPR=25;RUN=1;SAF=25;SAP=57.2971;SAR=0;SRF=81;SRP=178.9;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|1:55:42,13:42:1631:13:522:-15.06,0,-130.487 0|1:20:13,7:13:513:7:279:-10.4037,0,-40.4982 0|1:32:26,5:26:1004:5:200:-2.86258,0,-81.2186 dDocent_Contig_13204 24 . T G 687.814 . AB=0.534884;ABP=3.46479;AC=4;AF=0.666667;AN=6;AO=24;CIGAR=1X;DP=44;DPB=44;DPRA=0;EPP=55.1256;EPPR=46.4397;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=935;QR=815;RO=20;RPL=0;RPP=55.1256;RPPR=46.4397;RPR=24;RUN=1;SAF=24;SAP=55.1256;SAR=0;SRF=20;SRP=46.4397;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:25:6,19:6:244:19:736:-59.0344,0,-14.8131 1/1:1:0,1:0:0:1:40:-3.99568,-0.30103,0 0/1:18:14,4:14:571:4:159:-9.27341,0,-46.3133 dDocent_Contig_13206 8 . T G 38.1722 . AB=0.133333;ABP=55.5599;AC=2;AF=0.333333;AN=6;AO=6;CIGAR=1X;DP=61;DPB=61;DPRA=1.40625;EPP=16.0391;EPPR=122.441;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=0;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=223;QR=2074;RO=55;RPL=0;RPP=16.0391;RPPR=122.441;RPR=6;RUN=1;SAF=6;SAP=16.0391;SAR=0;SRF=55;SRP=122.441;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:41:36,5:36:1364:5:191:-5.21629,0,-110.703 0/1:4:3,1:3:110:1:32:-1.99519,0,-9.05549 0/0:16:16,0:16:600:0:0:0,-4.81648,-54.3341 dDocent_Contig_13207 6 . C A 297.49 . AB=0.391304;ABP=5.3706;AC=3;AF=0.5;AN=6;AO=12;CIGAR=1X;DP=40;DPB=40;DPRA=0;EPP=29.068;EPPR=63.8115;GTI=0;LEN=1;MEANALT=1;MQM=45.1667;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=0;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=469;QR=1090;RO=28;RPL=0;RPP=29.068;RPPR=63.8115;RPR=12;RUN=1;SAF=0;SAP=29.068;SAR=12;SRF=28;SRP=63.8115;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:23:14,9:14:546:9:349:-23.7821,0,-42.5627 1/1:2:0,2:0:0:2:81:-7.48919,-0.60206,0 0/0:15:14,1:14:544:1:39:0,-0.69445,-45.4851 dDocent_Contig_13208 8 . T A 299.02 . AB=0.302326;ABP=17.6046;AC=2;AF=0.333333;AN=6;AO=13;CIGAR=1X;DP=51;DPB=51;DPRA=2.6875;EPP=31.2394;EPPR=85.5263;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=3.46945e-18;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=507;QR=1465;RO=38;RPL=0;RPP=31.2394;RPPR=85.5263;RPR=13;RUN=1;SAF=13;SAP=31.2394;SAR=0;SRF=38;SRP=85.5263;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:35:27,8:27:1036:8:312:-17.9089,0,-83.0107 0/1:8:3,5:3:117:5:195:-15.516,0,-8.50214 0/0:8:8,0:8:312:0:0:0,-2.40824,-28.4449 dDocent_Contig_13209 46 . G A 346.608 . AB=0.3;ABP=20.3821;AC=3;AF=0.5;AN=6;AO=15;CIGAR=1X;DP=50;DPB=50;DPRA=0;EPP=35.5824;EPPR=79.0118;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=601;QR=1409;RO=35;RPL=0;RPP=35.5824;RPPR=79.0118;RPR=15;RUN=1;SAF=15;SAP=35.5824;SAR=0;SRF=35;SRP=79.0118;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:31:24,7:24:972:7:280:-16.2391,0,-78.4456 0/1:10:4,6:4:159:6:239:-18.874,0,-11.6805 0/1:9:7,2:7:278:2:82:-5.07041,0,-22.6804 dDocent_Contig_13210 126 . A C 253.41 . AB=0.205882;ABP=28.557;AC=4;AF=0.666667;AN=6;AO=11;CIGAR=1X;DP=38;DPB=38;DPRA=0;EPP=26.8965;EPPR=61.6401;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=422;QR=1014;RO=27;RPL=0;RPP=26.8965;RPPR=61.6401;RPR=11;RUN=1;SAF=0;SAP=26.8965;SAR=11;SRF=0;SRP=61.6401;SRR=27;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:26:22,4:22:824:4:156:-6.59051,0,-66.649 1/1:4:0,4:0:0:4:152:-14.0495,-1.20412,0 0/1:8:5,3:5:190:3:114:-8.22374,0,-15.0587 dDocent_Contig_13211 78 . C T 144.133 . AB=0.204082;ABP=40.2799;AC=2;AF=0.333333;AN=6;AO=10;CIGAR=1X;DP=54;DPB=54;DPRA=4.9;EPP=24.725;EPPR=98.5551;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=3.46945e-18;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=355;QR=1522;RO=44;RPL=10;RPP=24.725;RPPR=98.5551;RPR=0;RUN=1;SAF=10;SAP=24.725;SAR=0;SRF=44;SRP=98.5551;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:35:27,8:27:942:8:284:-15.3675,0,-74.5551 0/1:14:12,2:12:409:2:71:-2.52764,0,-32.9221 0/0:5:5,0:5:171:0:0:0,-1.50515,-15.7265 dDocent_Contig_13212 8 . T G 1366.02 . AB=0.614286;ABP=10.9517;AC=4;AF=0.666667;AN=6;AO=47;CIGAR=1X;DP=74;DPB=74;DPRA=0;EPP=105.07;EPPR=61.6401;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=1780;QR=1044;RO=27;RPL=0;RPP=105.07;RPPR=61.6401;RPR=47;RUN=1;SAF=47;SAP=105.07;SAR=0;SRF=27;SRP=61.6401;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:43:11,32:11:423:32:1213:-96.5184,0,-25.4789 1/1:4:0,4:0:0:4:143:-13.2204,-1.20412,0 0/1:27:16,11:16:621:11:424:-30.3864,0,-48.1024 dDocent_Contig_13213 8 . T C 3956.13 . AB=0.195612;ABP=883.421;AC=3;AF=0.5;AN=6;AO=214;CIGAR=1X;DP=1094;DPB=1094;DPRA=0;EPP=467.705;EPPR=1883.59;GTI=0;LEN=1;MEANALT=1.66667;MQM=56.1075;MQMR=58.5763;NS=3;NUMALT=1;ODDS=0;PAIRED=0.995327;PAIREDR=0.984055;PAO=0;PQA=0;PQR=0;PRO=0;QA=8175;QR=33683;RO=878;RPL=0;RPP=467.705;RPPR=1909.56;RPR=214;RUN=1;SAF=214;SAP=467.705;SAR=0;SRF=875;SRP=1883.59;SRR=3;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:401:306,94:306:11726:94:3573:-199.055,0,-931.939 0/1:343:270,72:270:10324:72:2758:-143.77,0,-821.063 0/1:350:302,48:302:11633:48:1844:-58.3104,0,-939.127 dDocent_Contig_13214 75 . C T 448.573 . AB=0.247619;ABP=61.1024;AC=3;AF=0.5;AN=6;AO=26;CIGAR=1X;DP=105;DPB=105;DPRA=0;EPP=59.4686;EPPR=174.557;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=900;QR=2791;RO=79;RPL=26;RPP=59.4686;RPPR=174.557;RPR=0;RUN=1;SAF=26;SAP=59.4686;SAR=0;SRF=79;SRP=174.557;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:77:61,16:61:2154:16:572:-28.6343,0,-170.948 0/1:16:12,4:12:428:4:146:-8.68131,0,-34.0417 0/1:12:6,6:6:209:6:182:-13.0646,0,-15.5378 dDocent_Contig_13216 41 . A G 50.5687 . AB=0.214286;ABP=12.937;AC=1;AF=0.166667;AN=6;AO=3;CIGAR=1X;DP=49;DPB=49;DPRA=0.8;EPP=9.52472;EPPR=102.898;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=119;QR=1824;RO=46;RPL=0;RPP=9.52472;RPPR=102.898;RPR=3;RUN=1;SAF=3;SAP=9.52472;SAR=0;SRF=46;SRP=102.898;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:32:32,0:32:1265:0:0:0,-9.63296,-114.121 0/0:3:3,0:3:121:0:0:0,-0.90309,-11.2802 0/1:14:11,3:11:438:3:119:-6.88059,0,-35.5569 dDocent_Contig_13219 15 . G A 50.9109 . AB=0.12766;ABP=59.6072;AC=1;AF=0.166667;AN=6;AO=10;CIGAR=1X;DP=148;DPB=148;DPRA=0;EPP=24.725;EPPR=294.051;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=55.7391;NS=3;NUMALT=1;ODDS=6.93889e-18;PAIRED=1;PAIREDR=0.565217;PAO=0;PQA=0;PQR=0;PRO=0;QA=388;QR=5347;RO=138;RPL=0;RPP=24.725;RPPR=302.673;RPR=10;RUN=1;SAF=10;SAP=24.725;SAR=0;SRF=137;SRP=294.051;SRR=1;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:68:66,2:66:2540:2:80:0,-12.8785,-220.84 0/0:33:31,2:31:1187:2:78:0,-2.53069,-85.1779 0/1:47:41,6:41:1620:6:230:-6.91499,0,-127.12 dDocent_Contig_13220 10 . A G 1174.76 . AB=0.573529;ABP=6.20364;AC=3;AF=0.5;AN=6;AO=39;CIGAR=1X;DP=68;DPB=68;DPRA=0;EPP=87.6977;EPPR=65.983;GTI=0;LEN=1;MEANALT=1;MQM=54.3333;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=1589;QR=1164;RO=29;RPL=0;RPP=87.6977;RPPR=65.983;RPR=39;RUN=1;SAF=39;SAP=87.6977;SAR=0;SRF=29;SRP=65.983;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:47:17,30:17:681:30:1220:-95.4818,0,-47.4716 0/1:8:4,4:4:157:4:164:-12.6733,0,-12.0994 0/1:13:8,5:8:326:5:205:-14.844,0,-25.7965 dDocent_Contig_13221 9 . A T 916.288 . AB=0.395833;ABP=12.0581;AC=3;AF=0.5;AN=6;AO=38;CIGAR=1X;DP=96;DPB=96;DPRA=0;EPP=85.5263;EPPR=128.956;GTI=0;LEN=1;MEANALT=1;MQM=50.7632;MQMR=58.6897;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=0.913793;PAO=0;PQA=0;PQR=0;PRO=0;QA=1451;QR=2216;RO=58;RPL=0;RPP=85.5263;RPPR=128.956;RPR=38;RUN=1;SAF=38;SAP=85.5263;SAR=0;SRF=58;SRP=128.956;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:49:27,22:27:1024:22:828:-59.7197,0,-75.9413 0/1:19:9,10:9:345:10:389:-24.504,0,-25.6888 0/1:28:22,6:22:847:6:234:-12.9279,0,-68.1241 dDocent_Contig_13222 8 . T G 356.911 . AB=0.162162;ABP=149.731;AC=2;AF=0.333333;AN=6;AO=26;CIGAR=1X;DP=176;DPB=176;DPRA=0;EPP=59.4686;EPPR=328.731;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=1.38778e-17;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=1001;QR=5746;RO=150;RPL=0;RPP=59.4686;RPPR=328.731;RPR=26;RUN=1;SAF=26;SAP=59.4686;SAR=0;SRF=150;SRP=328.731;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:128:108,20:108:4141:20:771:-31.1852,0,-334.23 0/1:20:16,4:16:617:4:152:-8.0286,0,-49.8482 0/0:28:26,2:26:988:2:78:0,-1.02537,-81.8242 dDocent_Contig_13223 49 . A G 151.789 . AB=0.4;ABP=4.31318;AC=1;AF=0.166667;AN=6;AO=6;CIGAR=1X;DP=53;DPB=53;DPRA=0.789474;EPP=16.0391;EPPR=105.07;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=235;QR=1813;RO=47;RPL=0;RPP=16.0391;RPPR=105.07;RPR=6;RUN=1;SAF=6;SAP=16.0391;SAR=0;SRF=47;SRP=105.07;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:34:34,0:34:1316:0:0:0,-10.235,-118.704 0/0:4:4,0:4:161:0:0:0,-1.20412,-14.8755 0/1:15:9,6:9:336:6:235:-17.0027,0,-26.0701 dDocent_Contig_13224 56 . A G 199.186 . AB=0.294118;ABP=15.5282;AC=3;AF=0.5;AN=6;AO=10;CIGAR=1X;DP=34;DPB=34;DPRA=0;EPP=24.725;EPPR=55.1256;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=384;QR=903;RO=24;RPL=10;RPP=24.725;RPPR=55.1256;RPR=0;RUN=1;SAF=10;SAP=24.725;SAR=0;SRF=24;SRP=55.1256;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:14:10,4:10:366:4:156:-10.2029,0,-29.0652 0/1:5:2,3:2:77:3:122:-9.86734,0,-5.80305 0/1:15:12,3:12:460:3:106:-5.37122,0,-37.2349 dDocent_Contig_13225 26 . C T 40.3209 . AB=0.117647;ABP=24.5973;AC=1;AF=0.25;AN=4;AO=2;CIGAR=8M1X11M;DP=24;DPB=24.9;DPRA=0;EPP=7.35324;EPPR=46.4397;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=2;NUMALT=2;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=81;QR=777;RO=20;RPL=0;RPP=7.35324;RPPR=46.4397;RPR=2;RUN=1;SAF=2;SAP=7.35324;SAR=0;SRF=20;SRP=46.4397;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|0:7:5,2,0:5:193:2,0:76,0:-5.1076,0,-15.6341,-6.61275,-16.2362,-22.4675 .:.:.:.:.:.:.:. 0|1:17:15,0,2:15:584:0,2:0,81:-2.56822,-7.08367,-55.0675,0,-48.3866,-47.7845 dDocent_Contig_13226 28 . A T 275.869 . AB=0.333333;ABP=13.1438;AC=3;AF=0.5;AN=6;AO=14;CIGAR=1X1M1X;DP=42;DPB=42;DPRA=0;EPP=5.49198;EPPR=63.8115;GTI=0;LEN=1;MEANALT=1;MQM=48.0714;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=0.571429;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=554;QR=1060;RO=28;RPL=0;RPP=33.4109;RPPR=63.8115;RPR=14;RUN=1;SAF=9;SAP=5.49198;SAR=5;SRF=28;SRP=63.8115;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|1:23:17,6:17:645:6:239:-12.8693,0,-51.4518 0|1:6:4,2:4:152:2:77:-4.51629,0,-12.2415 0|1:13:7,6:7:263:6:238:-15.7237,0,-20.1144 dDocent_Contig_13227 29 . T C 266.151 . AB=0.197368;ABP=63.4687;AC=2;AF=0.333333;AN=6;AO=15;CIGAR=1X;DP=92;DPB=92;DPRA=2.375;EPP=35.5824;EPPR=170.214;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=581;QR=3028;RO=77;RPL=0;RPP=35.5824;RPPR=170.214;RPR=15;RUN=1;SAF=15;SAP=35.5824;SAR=0;SRF=77;SRP=170.214;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:37:31,6:31:1222:6:240:-10.8379,0,-99.1108 0/0:16:16,0:16:626:0:0:0,-4.81648,-56.6733 0/1:39:30,9:30:1180:9:341:-19.3001,0,-94.7374 dDocent_Contig_13228 193 . A G 204.356 . AB=0.583333;ABP=3.73412;AC=1;AF=0.166667;AN=6;AO=7;CIGAR=1X;DP=21;DPB=21;DPRA=2.66667;EPP=18.2106;EPPR=33.4109;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=280;QR=569;RO=14;RPL=7;RPP=18.2106;RPPR=33.4109;RPR=0;RUN=1;SAF=0;SAP=18.2106;SAR=7;SRF=0;SRP=33.4109;SRR=14;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:12:5,7:5:205:7:280:-21.9581,0,-15.2226 0/0:2:2,0:2:82:0:0:0,-0.60206,-7.77968 0/0:7:7,0:7:282:0:0:0,-2.10721,-25.7524 dDocent_Contig_13230 7 . A G 56.5746 . AB=0.0566038;ABP=93.5156;AC=1;AF=0.166667;AN=6;AO=3;CIGAR=1X3M5I11M;DP=87;DPB=93.5333;DPRA=0;EPP=9.52472;EPPR=144.156;GTI=0;LEN=1;MEANALT=2.5;MQM=46;MQMR=60;NS=3;NUMALT=4;ODDS=0;PAIRED=0;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=95;QR=2493;RO=65;RPL=0;RPP=9.52472;RPPR=144.156;RPR=3;RUN=1;SAF=3;SAP=9.52472;SAR=0;SRF=65;SRP=144.156;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|0:47:37,5,0,1,0:37:1414:5,0,1,0:198,0,38,0:-5.1461,0,-114.523,-16.2842,-116.028,-132.3,-13.1678,-112.912,-129.184,-128.883,-16.2842,-116.028,-132.3,-129.184,-132.3 0|1:6:4,0,0,2,0:4:152:0,0,2,0:0,0,57,0:-3.32218,-4.5263,-17.0649,-4.5263,-17.0649,-17.0649,0,-12.8451,-12.8451,-12.243,-4.5263,-17.0649,-17.0649,-12.8451,-17.0649 0|0:34:24,3,3,0,2:24:927:3,3,0,2:120,115,0,82:-2.64592,0,-75.2302,-0.661018,-66.9174,-75.8832,-9.87064,-76.1333,-76.7863,-86.0022,-3.0982,-69.3636,-70.0167,-79.2327,-78.6306 dDocent_Contig_13231 19 . A C 154.755 . AB=0.29771;ABP=49.5726;AC=3;AF=0.5;AN=6;AO=39;CIGAR=2X4M2X2M;DP=131;DPB=130.9;DPRA=0;EPP=87.6977;EPPR=72.4974;GTI=0;LEN=1;MEANALT=9.33333;MQM=14.641;MQMR=60;NS=3;NUMALT=9;ODDS=0;PAIRED=0;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=571;QR=1236;RO=32;RPL=0;RPP=87.6977;RPPR=72.4974;RPR=39;RUN=1;SAF=39;SAP=87.6977;SAR=0;SRF=32;SRP=72.4974;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|1:23:1,3,0,0,2,2,3,1,2,5:1:40:3,0,0,2,2,3,1,2,5:48,0,0,22,46,60,22,12,79:-4.36104,-2.04258,-4.44823,-4.66207,-5.35132,-7.969,-4.66207,-5.35132,-7.969,-7.969,-3.79884,-4.49004,-7.10669,-7.10669,-6.50463,-1.65673,-2.34661,-4.96513,-4.96513,-4.10277,-4.36307,-0.965259,-1.65602,-4.27431,-4.27431,-3.41238,-1.26895,-3.37122,-3.24979,-3.93941,-6.5574,-6.5574,-5.69512,-3.553,-2.86209,-6.25637,-4.6302,-5.32191,-7.93782,-7.93782,-7.07711,-4.93437,-4.24424,-6.52648,-7.33576,-0.385435,-1.07899,-3.69568,-3.69568,-2.83543,-0.690351,0,-2.28356,-3.66793,-2.19053 0|1:67:20,0,1,5,0,0,0,8,1,25:20:769:0,1,5,0,0,0,8,1,25:0,10,86,0,0,0,171,6,367:-12.879,-18.8996,-82.1069,-18.5528,-81.7608,-81.4598,-13.9739,-77.1879,-76.842,-75.6827,-18.8996,-82.1069,-81.7608,-77.1879,-82.1069,-18.8996,-82.1069,-81.7608,-77.1879,-82.1069,-82.1069,-18.8996,-82.1069,-81.7608,-77.1879,-82.1069,-82.1069,-82.1069,-8.06056,-71.2821,-70.9363,-66.364,-71.2821,-71.2821,-71.2821,-68.8738,-18.8811,-82.089,-81.743,-77.1702,-82.089,-82.089,-82.089,-71.2645,-81.7879,0,-63.2469,-62.9033,-58.3383,-63.2469,-63.2469,-63.2469,-52.4364,-63.2318,-55.7212 0|1:41:11,0,4,4,0,0,5,6,0,9:11:427:0,4,4,0,0,5,6,0,9:0,37,80,0,0,97,114,0,125:-3.54031,-6.85164,-41.9997,-5.54721,-40.6992,-39.4951,-1.91726,-37.0738,-35.7756,-35.8697,-6.85164,-41.9997,-40.6992,-37.0738,-41.9997,-6.85164,-41.9997,-40.6992,-37.0738,-41.9997,-41.9997,-0.964999,-36.1237,-34.8262,-31.1992,-36.1237,-36.1237,-34.6185,0,-35.1609,-33.8643,-30.2369,-35.1609,-35.1609,-29.2875,-33.3547,-6.85164,-41.9997,-40.6992,-37.0738,-41.9997,-41.9997,-36.1237,-35.1609,-41.9997,-0.65144,-35.8136,-34.5218,-30.8929,-35.8136,-35.8136,-29.9446,-28.9839,-35.8136,-33.1043 dDocent_Contig_13232 8 . G A 131.157 . AB=0.208333;ABP=38.4777;AC=2;AF=0.333333;AN=6;AO=10;CIGAR=1X;DP=55;DPB=55;DPRA=3.42857;EPP=24.725;EPPR=100.727;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=3.46945e-18;PAIRED=1;PAIREDR=0.711111;PAO=0;PQA=0;PQR=0;PRO=0;QA=338;QR=1718;RO=45;RPL=0;RPP=24.725;RPPR=100.727;RPR=10;RUN=1;SAF=10;SAP=24.725;SAR=0;SRF=45;SRP=100.727;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:25:19,6:19:728:6:189:-9.78877,0,-58.3254 0/1:23:19,4:19:720:4:149:-6.84983,0,-58.206 0/0:7:7,0:7:270:0:0:0,-2.10721,-24.6655 dDocent_Contig_13233 8 . G A 355.518 . AB=0.253521;ABP=40.4758;AC=3;AF=0.5;AN=6;AO=18;CIGAR=1X;DP=71;DPB=71;DPRA=0;EPP=42.0968;EPPR=118.098;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=3.46945e-18;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=682;QR=2028;RO=53;RPL=0;RPP=42.0968;RPPR=118.098;RPR=18;RUN=1;SAF=18;SAP=42.0968;SAR=0;SRF=53;SRP=118.098;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:40:29,11:29:1114:11:425:-26.5634,0,-88.5188 0/1:16:12,4:12:455:4:152:-9.23328,0,-36.4815 0/1:15:12,3:12:459:3:105:-5.27793,0,-37.1432 dDocent_Contig_13235 41 . C T 3910.49 . AB=0.0779817;ABP=340.246;AC=0;AF=0;AN=6;AO=17;CIGAR=2M1X1M1X1M;DP=218;DPB=197.667;DPRA=0;EPP=39.9253;EPPR=89.8692;GTI=0;LEN=1;MEANALT=4.66667;MQM=60;MQMR=60;NS=3;NUMALT=4;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=662;QR=1563;RO=40;RPL=0;RPP=39.9253;RPPR=89.8692;RPR=17;RUN=1;SAF=17;SAP=39.9253;SAR=0;SRF=40;SRP=89.8692;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|0:77:5,4,42,8,16:5:196:4,42,8,16:161,1624,310,582:-162.843,-151.078,-165.992,-31.1474,-33.9952,-34.6242,-138.882,-141.731,-21.7998,-152.593,-117.073,-119.921,0,-107.726,-128.375 0|0:73:21,0,40,3,8:21:833:0,40,3,8:0,1585,112,315:-124.144,-130.465,-199.038,0,-68.5777,-56.5365,-121.297,-189.868,-59.4095,-188.965,-104.553,-173.126,-42.6653,-163.956,-170.717 0|0:68:14,1,35,6,10:14:534:1,35,6,10:40,1383,240,390:-109.586,-110.505,-154.008,0,-40.5055,-33.2648,-94.0292,-134.538,-24.0283,-136.027,-81.7483,-122.256,-11.7478,-105.781,-122.541 dDocent_Contig_13236 31 . T A 82.1337 . AB=0.145455;ABP=63.0614;AC=2;AF=0.333333;AN=6;AO=8;CIGAR=1X;DP=59;DPB=59;DPRA=6.875;EPP=20.3821;EPPR=113.755;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=306;QR=2051;RO=51;RPL=0;RPP=20.3821;RPPR=113.755;RPR=8;RUN=1;SAF=8;SAP=20.3821;SAR=0;SRF=51;SRP=113.755;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:44:38,6:38:1529:6:224:-7.26732,0,-124.602 0/1:11:9,2:9:362:2:82:-4.46835,0,-29.6327 0/0:4:4,0:4:160:0:0:0,-1.20412,-14.7834 dDocent_Contig_13238 8 . G A 1324.79 . AB=0.703125;ABP=25.9465;AC=3;AF=0.5;AN=6;AO=45;CIGAR=1X2M1X1M1X;DP=64;DPB=64;DPRA=0;EPP=100.727;EPPR=44.2683;GTI=0;LEN=1;MEANALT=1;MQM=59.2889;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=0.0888889;PAIREDR=0.947368;PAO=0;PQA=0;PQR=0;PRO=0;QA=1741;QR=732;RO=19;RPL=0;RPP=100.727;RPPR=44.2683;RPR=45;RUN=1;SAF=45;SAP=100.727;SAR=0;SRF=19;SRP=44.2683;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|1:42:12,30:12:461:30:1168:-92.7637,0,-29.1935 0|1:13:5,8:5:194:8:300:-23.4424,0,-13.9195 0|1:9:2,7:2:77:7:273:-21.7959,0,-4.59956 dDocent_Contig_13239 17 . A G 77.5154 . AB=0.0789474;ABP=61.5258;AC=0;AF=0;AN=6;AO=3;CIGAR=2X;DP=113;DPB=113;DPRA=0.253333;EPP=9.52472;EPPR=215.815;GTI=0;LEN=1;MEANALT=2;MQM=60;MQMR=60;NS=3;NUMALT=2;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=119;QR=3894;RO=98;RPL=0;RPP=9.52472;RPPR=215.815;RPR=3;RUN=1;SAF=3;SAP=9.52472;SAR=0;SRF=98;SRP=215.815;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|0:75:69,0,6:69:2735:0,6:0,236:0,-20.7711,-245.885,-0.965717,-226.473,-224.666 0|0:8:4,1,3:4:163:1,3:40,121:-8.77259,-6.68246,-19.8311,0,-10.1597,-12.5502 0|0:30:25,2,3:25:996:2,3:79,121:-2.45346,-3.48192,-84.8903,0,-75.5175,-81.1148 dDocent_Contig_13243 20 . G A 299.895 . AB=0.625;ABP=5.18177;AC=1;AF=0.166667;AN=6;AO=10;CIGAR=1X;DP=44;DPB=44;DPRA=1.14286;EPP=24.725;EPPR=76.8404;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=403;QR=1335;RO=34;RPL=0;RPP=24.725;RPPR=76.8404;RPR=10;RUN=1;SAF=10;SAP=24.725;SAR=0;SRF=34;SRP=76.8404;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:26:26,0:26:1014:0:0:0,-7.82678,-91.5569 0/0:2:2,0:2:81:0:0:0,-0.60206,-7.68573 0/1:16:6,10:6:240:10:403:-31.8131,0,-17.1574 dDocent_Contig_13245 32 . C G 59.5322 . AB=0.428571;ABP=3.32051;AC=1;AF=0.166667;AN=6;AO=4;CIGAR=1X1M2X;DP=23;DPB=23;DPRA=1.41667;EPP=11.6962;EPPR=33.4109;GTI=0;LEN=1;MEANALT=2;MQM=20;MQMR=60;NS=3;NUMALT=2;ODDS=0;PAIRED=0;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=148;QR=558;RO=14;RPL=0;RPP=11.6962;RPPR=33.4109;RPR=4;RUN=1;SAF=4;SAP=11.6962;SAR=0;SRF=14;SRP=33.4109;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|0:6:6,0,0:6:242:0,0:0,0:0,-1.80618,-22.1569,-1.80618,-22.1569,-22.1569 0|0:10:8,0,1:8:316:0,1:0,40:0,-2.40824,-28.4836,-1.01806,-27.0082,-26.7071 0|1:7:0,4,3:0:0:4,3:162,108:-7.70949,-4.64029,-3.43617,-3.23374,0,-2.33065 dDocent_Contig_13246 39 . G C 259.402 . AB=0.28;ABP=13.5202;AC=1;AF=0.166667;AN=6;AO=7;CIGAR=1X2M1X;DP=50;DPB=50;DPRA=6.25;EPP=18.2106;EPPR=85.5263;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=2;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=280;QR=1514;RO=38;RPL=0;RPP=18.2106;RPPR=85.5263;RPR=7;RUN=1;SAF=7;SAP=18.2106;SAR=0;SRF=38;SRP=85.5263;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|0:21:16,0,5:16:637:0,5:0,193:-11.4171,-16.2336,-68.6952,0,-52.8501,-51.345 0|0:4:4,0,0:4:160:0,0:0,0:0,-1.20412,-14.784,-1.20412,-14.784,-14.784 0|1:25:18,7,0:18:717:7,0:280,0:-18.0458,0,-57.3332,-23.4643,-59.4405,-82.5057 dDocent_Contig_13247 36 . A G 427.693 . AB=0.457143;ABP=3.56868;AC=3;AF=0.5;AN=6;AO=16;CIGAR=1X;DP=35;DPB=35;DPRA=0;EPP=37.7539;EPPR=44.2683;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=641;QR=763;RO=19;RPL=0;RPP=37.7539;RPPR=44.2683;RPR=16;RUN=1;SAF=16;SAP=37.7539;SAR=0;SRF=19;SRP=44.2683;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:9:6,3:6:243:3:122:-8.66322,0,-19.5383 0/1:18:9,9:9:361:9:358:-27.1617,0,-27.4353 0/1:8:4,4:4:159:4:161:-12.4672,0,-12.2832 dDocent_Contig_13248 21 . T C 373.562 . AB=0.262295;ABP=32.9481;AC=2;AF=0.333333;AN=6;AO=16;CIGAR=1X;DP=67;DPB=67;DPRA=5.08333;EPP=37.7539;EPPR=113.755;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=650;QR=2037;RO=51;RPL=0;RPP=37.7539;RPPR=113.755;RPR=16;RUN=1;SAF=16;SAP=37.7539;SAR=0;SRF=51;SRP=113.755;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:50:37,13:37:1483:13:527:-32.7256,0,-118.665 0/0:6:6,0:6:242:0:0:0,-1.80618,-22.1575 0/1:11:8,3:8:312:3:123:-8.15346,0,-25.1258 dDocent_Contig_13250 11 . T A 56.7964 . AB=0.16129;ABP=33.9012;AC=2;AF=0.333333;AN=6;AO=7;CIGAR=1X;DP=64;DPB=64;DPRA=0;EPP=18.2106;EPPR=126.784;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=3.46945e-18;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=278;QR=2295;RO=57;RPL=0;RPP=18.2106;RPPR=126.784;RPR=7;RUN=1;SAF=7;SAP=18.2106;SAR=0;SRF=57;SRP=126.784;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:15:12,3:12:487:3:119:-6.57973,0,-39.6656 0/1:16:14,2:14:550:2:78:-2.58682,0,-45.0263 0/0:33:31,2:31:1258:2:81:0,-2.24826,-105.799 dDocent_Contig_13252 7 . A T 48.0942 . AB=0.155556;ABP=49.3833;AC=2;AF=0.333333;AN=6;AO=8;CIGAR=1X;DP=76;DPB=76;DPRA=0;EPP=20.3821;EPPR=150.67;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=271;QR=2579;RO=68;RPL=0;RPP=20.3821;RPPR=150.67;RPR=8;RUN=1;SAF=8;SAP=20.3821;SAR=0;SRF=68;SRP=150.67;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:31:30,1:30:1151:1:35:0,-5.8333,-100.393 0/1:38:33,5:33:1233:5:186:-5.66075,0,-99.826 0/1:7:5,2:5:195:2:50:-2.63952,0,-15.817 dDocent_Contig_13253 25 . G A 1056.46 . AB=0.447059;ABP=5.07959;AC=3;AF=0.5;AN=6;AO=38;CIGAR=1X;DP=85;DPB=85;DPRA=0;EPP=85.5263;EPPR=105.07;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=1508;QR=1873;RO=47;RPL=0;RPP=85.5263;RPPR=105.07;RPR=38;RUN=1;SAF=38;SAP=85.5263;SAR=0;SRF=47;SRP=105.07;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:29:12,17:12:478:17:669:-51.8028,0,-34.6418 0/1:18:11,7:11:448:7:279:-20.061,0,-35.2569 0/1:38:24,14:24:947:14:560:-39.305,0,-74.0891 dDocent_Contig_13254 24 . T A 68.5739 . AB=0.16129;ABP=33.9012;AC=1;AF=0.166667;AN=6;AO=9;CIGAR=2X;DP=224;DPB=224;DPRA=0.482456;EPP=22.5536;EPPR=467.705;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=6.93889e-18;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=353;QR=8491;RO=214;RPL=0;RPP=22.5536;RPPR=467.705;RPR=9;RUN=1;SAF=9;SAP=22.5536;SAR=0;SRF=214;SRP=467.705;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|0:114:113,0:113:4497:0:0:0,-34.0164,-404.25 0|0:79:75,4:75:2969:4:157:0,-9.27418,-252.808 0|1:31:26,5:26:1025:5:196:-8.6813,0,-83.2135 dDocent_Contig_13255 104 . N A 291.224 . AB=0;ABP=0;AC=6;AF=1;AN=6;AO=9;CIGAR=4X;DP=9;DPB=9;DPRA=0;EPP=22.5536;EPPR=0;GTI=0;LEN=1;MEANALT=1;MQM=50.1111;MQMR=0;NS=3;NUMALT=1;ODDS=1.69407e-21;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=307;QR=0;RO=0;RPL=0;RPP=22.5536;RPPR=0;RPR=9;RUN=1;SAF=0;SAP=22.5536;SAR=9;SRF=0;SRP=0;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 1|1:6:0,6:0:0:6:207:-18.9218,-1.80618,0 1|1:1:0,1:0:0:1:35:-3.43613,-0.30103,0 1|1:2:0,2:0:0:2:65:-6.16151,-0.60206,0 dDocent_Contig_13256 8 . G A 43.7549 . AB=0.5;ABP=3.0103;AC=1;AF=0.166667;AN=6;AO=2;CIGAR=1X;DP=28;DPB=28;DPRA=0.333333;EPP=7.35324;EPPR=59.4686;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=78;QR=999;RO=26;RPL=0;RPP=7.35324;RPPR=59.4686;RPR=2;RUN=1;SAF=2;SAP=7.35324;SAR=0;SRF=26;SRP=59.4686;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:17:17,0:17:656:0:0:0,-5.11751,-59.3768 0/0:7:7,0:7:267:0:0:0,-2.10721,-24.393 0/1:4:2,2:2:76:2:78:-6.19935,0,-6.01055 dDocent_Contig_13257 77 . A G 272.4 . AB=0.545455;ABP=3.40511;AC=2;AF=0.333333;AN=6;AO=12;CIGAR=1X;DP=27;DPB=27;DPRA=2.2;EPP=29.068;EPPR=35.5824;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=408;QR=520;RO=15;RPL=12;RPP=29.068;RPPR=35.5824;RPR=0;RUN=1;SAF=12;SAP=29.068;SAR=0;SRF=15;SRP=35.5824;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:14:5,9:5:170:9:307:-23.7473,0,-11.4198 0/0:5:5,0:5:171:0:0:0,-1.50515,-15.7264 0/1:8:5,3:5:179:3:101:-7.01553,0,-14.0522 dDocent_Contig_13258 26 . A G 330.763 . AB=0.5;ABP=3.0103;AC=2;AF=0.333333;AN=6;AO=12;CIGAR=1X;DP=32;DPB=32;DPRA=1.5;EPP=29.068;EPPR=46.4397;GTI=0;LEN=1;MEANALT=1;MQM=54.3333;MQMR=60;NS=3;NUMALT=1;ODDS=1.73472e-18;PAIRED=0.25;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=479;QR=753;RO=20;RPL=0;RPP=29.068;RPPR=46.4397;RPR=12;RUN=1;SAF=12;SAP=29.068;SAR=0;SRF=20;SRP=46.4397;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:16:11,5:11:426:5:205:-13.4272,0,-33.8755 0/1:8:1,7:1:39:7:274:-22.6179,0,-1.48832 0/0:8:8,0:8:288:0:0:0,-2.40824,-26.2556 dDocent_Contig_13259 13 . A G 99.4492 . AB=0.25;ABP=13.8677;AC=2;AF=0.333333;AN=6;AO=5;CIGAR=1X;DP=29;DPB=29;DPRA=1.11111;EPP=13.8677;EPPR=55.1256;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=202;QR=908;RO=24;RPL=0;RPP=13.8677;RPPR=55.1256;RPR=5;RUN=1;SAF=5;SAP=13.8677;SAR=0;SRF=24;SRP=55.1256;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:9:8,1:8:319:1:39:-1.18729,0,-26.3673 0/1:11:7,4:7:258:4:163:-11.7471,0,-20.2543 0/0:9:9,0:9:331:0:0:0,-2.70927,-30.1249 dDocent_Contig_13260 7 . A T 76.3811 . AB=0.181818;ABP=41.702;AC=1;AF=0.166667;AN=6;AO=11;CIGAR=1X;DP=90;DPB=90;DPRA=0;EPP=26.8965;EPPR=174.557;GTI=0;LEN=1;MEANALT=1;MQM=30.8182;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=0;PAIREDR=0.316456;PAO=0;PQA=0;PQR=0;PRO=0;QA=424;QR=2998;RO=79;RPL=0;RPP=26.8965;RPPR=174.557;RPR=11;RUN=1;SAF=11;SAP=26.8965;SAR=0;SRF=79;SRP=174.557;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:44:36,8:36:1385:8:308:-9.1605,0,-111.688 0/0:16:14,2:14:542:2:77:0,-0.470624,-44.7801 0/0:30:29,1:29:1071:1:39:0,-5.6073,-93.2658 dDocent_Contig_13261 121 . A G 802.665 . AB=0.622642;ABP=9.93443;AC=4;AF=0.666667;AN=6;AO=39;CIGAR=1X;DP=59;DPB=59;DPRA=0;EPP=87.6977;EPPR=44.2683;GTI=0;LEN=1;MEANALT=1.33333;MQM=30.6923;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=0;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=1375;QR=679;RO=19;RPL=0;RPP=87.6977;RPPR=44.2683;RPR=39;RUN=1;SAF=0;SAP=87.6977;SAR=39;SRF=0;SRP=44.2683;SRR=19;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:41:9,31:9:324:31:1096:-64.2087,0,-17.1048 1/1:6:0,6:0:0:6:207:-17.3611,-1.80618,0 0/1:12:10,2:10:355:2:72:-2.12203,0,-28.678 dDocent_Contig_13262 11 . G T 174.358 . AB=0.136364;ABP=28.2783;AC=4;AF=0.666667;AN=6;AO=7;CIGAR=1X;DP=26;DPB=26;DPRA=0;EPP=18.2106;EPPR=44.2683;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=280;QR=742;RO=19;RPL=0;RPP=18.2106;RPPR=44.2683;RPR=7;RUN=1;SAF=7;SAP=18.2106;SAR=0;SRF=19;SRP=44.2683;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 1/1:4:0,4:0:0:4:161:-14.8753,-1.20412,0 0/1:10:9,1:9:357:1:38:-0.786969,0,-29.4824 0/1:12:10,2:10:385:2:81:-4.07337,0,-31.3868 dDocent_Contig_13263 49 . G A 534.767 . AB=0.242718;ABP=62.2304;AC=3;AF=0.5;AN=6;AO=25;CIGAR=1X;DP=103;DPB=103;DPRA=0;EPP=57.2971;EPPR=172.385;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=0.96;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=988;QR=3081;RO=78;RPL=0;RPP=57.2971;RPPR=172.385;RPR=25;RUN=1;SAF=25;SAP=57.2971;SAR=0;SRF=78;SRP=172.385;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:74:56,18:56:2197:18:717:-42.5789,0,-175.63 0/1:6:4,2:4:158:2:82:-5.9735,0,-12.7938 0/1:23:18,5:18:726:5:189:-10.4471,0,-58.7413 dDocent_Contig_13264 13 . G A 125.975 . AB=0.230769;ABP=19.3799;AC=1;AF=0.166667;AN=6;AO=6;CIGAR=1X;DP=54;DPB=54;DPRA=1.85714;EPP=16.0391;EPPR=107.241;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=243;QR=1894;RO=48;RPL=0;RPP=16.0391;RPPR=107.241;RPR=6;RUN=1;SAF=6;SAP=16.0391;SAR=0;SRF=48;SRP=107.241;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:22:22,0:22:877:0:0:0,-6.62266,-79.2392 0/0:6:6,0:6:234:0:0:0,-1.80618,-21.4298 0/1:26:20,6:20:783:6:243:-14.4214,0,-62.9531 dDocent_Contig_13266 8 . G A 2812.83 . AB=0.28125;ABP=82.8119;AC=3;AF=0.5;AN=6;AO=54;CIGAR=2X3M;DP=192;DPB=192;DPRA=0;EPP=120.27;EPPR=42.0968;GTI=0;LEN=1;MEANALT=7;MQM=54.963;MQMR=60;NS=3;NUMALT=4;ODDS=0;PAIRED=0;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=1998;QR=694;RO=18;RPL=0;RPP=120.27;RPPR=42.0968;RPR=54;RUN=1;SAF=54;SAP=120.27;SAR=0;SRF=18;SRP=42.0968;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 1|0:84:11,3,4,36,19:11:425:3,4,36,19:110,150,1320,630:-115.924,-110.568,-144.58,-109.647,-135.895,-143.358,-12.6728,-38.9326,-38.013,-36.7649,-71.6389,-97.888,-96.9678,0,-100.836 1|0:45:1,3,2,5,32:1:39:3,2,5,32:90,79,180,923:-79.1455,-73.0627,-75.3681,-74.5713,-71.3961,-77.1777,-65.0232,-61.8478,-63.3563,-66.7268,-11.2238,-8.06569,-9.56412,0,-4.80251 1|0:63:6,5,4,13,33:6:230:5,4,13,33:199,147,498,990:-91.7359,-77.2198,-94.601,-84.0853,-86.6494,-101.766,-53.2486,-55.8133,-62.6804,-68.2246,-21.407,-23.9699,-30.8434,0,-30.3584 dDocent_Contig_13267 11 . C A 56.6861 . AB=0.173913;ABP=24.253;AC=1;AF=0.166667;AN=6;AO=4;CIGAR=1X;DP=58;DPB=58;DPRA=1.31429;EPP=11.6962;EPPR=120.27;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=1.73472e-18;PAIRED=1;PAIREDR=0.962963;PAO=0;PQA=0;PQR=0;PRO=0;QA=156;QR=2121;RO=54;RPL=0;RPP=11.6962;RPPR=120.27;RPR=4;RUN=1;SAF=4;SAP=11.6962;SAR=0;SRF=54;SRP=120.27;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:11:11,0:11:435:0:0:0,-3.31133,-39.505 0/1:23:19,4:19:744:4:156:-7.49251,0,-60.3625 0/0:24:24,0:24:942:0:0:0,-7.22472,-85.0818 dDocent_Contig_13268 8 . G A 2585.21 . AB=0.472906;ABP=4.30463;AC=3;AF=0.5;AN=6;AO=96;CIGAR=1X;DP=203;DPB=203;DPRA=0;EPP=211.472;EPPR=235.358;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=3603;QR=4101;RO=107;RPL=0;RPP=211.472;RPPR=235.358;RPR=96;RUN=1;SAF=96;SAP=211.472;SAR=0;SRF=107;SRP=235.358;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:114:59,55:59:2259:55:2056:-150.954,0,-169.213 0/1:23:6,17:6:234:17:635:-50.5593,0,-14.5074 0/1:66:42,24:42:1608:24:912:-62.5299,0,-125.116 dDocent_Contig_13270 104 . N A 377.338 . AB=0;ABP=0;AC=6;AF=1;AN=6;AO=12;CIGAR=4X;DP=12;DPB=12.5;DPRA=0;EPP=29.068;EPPR=0;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=0;NS=3;NUMALT=1;ODDS=1.73472e-18;PAIRED=1;PAIREDR=0;PAO=2;PQA=70;PQR=0;PRO=0;QA=409;QR=0;RO=0;RPL=0;RPP=29.068;RPPR=0;RPR=12;RUN=1;SAF=0;SAP=29.068;SAR=12;SRF=0;SRP=0;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 1|1:8:0,8:0:0:8:270:-24.6292,-2.40824,0 1|1:2:0,2:0:0:2:70:-6.29753,-0.60206,0 1|1:2:0,2:0:0:2:69:-6.20446,-0.60206,0 dDocent_Contig_13271 11 . C T 59.1218 . AB=0.12766;ABP=59.6072;AC=1;AF=0.166667;AN=6;AO=7;CIGAR=1X;DP=165;DPB=165;DPRA=0.809524;EPP=18.2106;EPPR=337.472;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=54.462;NS=3;NUMALT=1;ODDS=3.46945e-18;PAIRED=1;PAIREDR=0.886076;PAO=0;PQA=0;PQR=0;PRO=0;QA=278;QR=6167;RO=158;RPL=0;RPP=18.2106;RPPR=346.103;RPR=7;RUN=1;SAF=7;SAP=18.2106;SAR=0;SRF=157;SRP=337.472;SRR=1;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:63:63,0:63:2460:0:0:0,-18.9649,-210.466 0/0:55:54,1:54:2105:1:39:0,-12.6601,-163.511 0/1:47:41,6:41:1602:6:239:-7.73609,0,-123.404 dDocent_Contig_13272 30 . T A 109.549 . AB=0.263158;ABP=12.2676;AC=1;AF=0.166667;AN=6;AO=7;CIGAR=1X;DP=51;DPB=51;DPRA=3.75;EPP=18.2106;EPPR=98.5551;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=278;QR=1752;RO=44;RPL=0;RPP=18.2106;RPPR=98.5551;RPR=7;RUN=1;SAF=7;SAP=18.2106;SAR=0;SRF=44;SRP=98.5551;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:19:14,5:14:559:5:198:-12.4769,0,-44.9336 0/0:26:24,2:24:949:2:80:0,-0.235205,-78.1187 0/0:6:6,0:6:244:0:0:0,-1.80618,-22.3388 dDocent_Contig_13273 8 . G C 1430.97 . AB=0.156863;ABP=107.326;AC=1;AF=0.166667;AN=6;AO=16;CIGAR=1X1M1X1M1X2M1X5M;DP=102;DPB=102;DPRA=0;EPP=37.7539;EPPR=46.4397;GTI=0;LEN=1;MEANALT=5.33333;MQM=60;MQMR=60;NS=3;NUMALT=7;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=630;QR=771;RO=20;RPL=0;RPP=37.7539;RPPR=46.4397;RPR=16;RUN=1;SAF=16;SAP=37.7539;SAR=0;SRF=20;SRP=46.4397;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|0:35:12,4,3,5,3,0,2,6:12:470:4,3,5,3,0,2,6:159,121,198,114,0,36,240:-16.1664,-6.68289,-44.1341,-9.80028,-35.3613,-47.552,-3.47627,-29.0382,-32.1552,-40.6271,-10.4301,-35.9901,-39.107,-32.7841,-48.1805,-19.7788,-45.3382,-48.4551,-42.1323,-49.0836,-58.4315,-17.6978,-43.2516,-46.368,-40.0462,-46.9966,-56.3431,-55.741,0,-25.5631,-28.6802,-22.3569,-29.3092,-38.6576,-36.572,-36.8514 0|0:32:8,7,0,4,1,10,0,2:8:301:7,0,4,1,10,0,2:275,0,158,40,378,0,73:-28.5705,-8.35612,-30.9079,-30.9787,-33.0151,-55.6373,-17.975,-20.0105,-42.6338,-41.4297,-27.683,-29.7192,-52.3416,-39.338,-52.0406,0,-2.0327,-24.6557,-11.6518,-21.3599,-21.6454,-30.9787,-33.0151,-55.6373,-42.6338,-52.3416,-24.6557,-55.6373,-25.0167,-27.0525,-49.6746,-36.6711,-46.379,-18.6939,-49.6746,-49.0725 1|0:35:0,5,0,27,1,0,0,1:0:0:5,0,27,1,0,0,1:196,0,1066,24,0,0,39:-103.881,-87.7631,-86.2579,-103.881,-87.7631,-103.881,-16.1501,0,-16.1501,-8.02234,-102.027,-85.9093,-102.027,-14.3102,-101.726,-103.881,-87.7631,-103.881,-16.1501,-102.027,-103.881,-103.881,-87.7631,-103.881,-16.1501,-102.027,-103.881,-103.881,-100.675,-84.5572,-100.675,-12.9418,-98.8209,-100.675,-100.675,-100.374 dDocent_Contig_13274 13 . A G 95.0816 . AB=0.263158;ABP=12.2676;AC=2;AF=0.333333;AN=6;AO=5;CIGAR=1X;DP=53;DPB=53;DPRA=0.279412;EPP=13.8677;EPPR=107.241;GTI=0;LEN=1;MEANALT=1;MQM=57.2;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=0;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=200;QR=1881;RO=48;RPL=0;RPP=13.8677;RPPR=107.241;RPR=5;RUN=1;SAF=5;SAP=13.8677;SAR=0;SRF=48;SRP=107.241;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:34:34,0:34:1343:0:0:0,-10.235,-121.131 0/1:7:4,3:4:152:3:120:-9.0503,0,-11.9421 0/1:12:10,2:10:386:2:80:-3.97922,0,-31.4814 dDocent_Contig_13276 42 . T G 46.5777 . AB=0.5;ABP=3.0103;AC=1;AF=0.166667;AN=6;AO=2;CIGAR=1X;DP=42;DPB=42;DPRA=0.210526;EPP=7.35324;EPPR=89.8692;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=81;QR=1621;RO=40;RPL=0;RPP=7.35324;RPPR=89.8692;RPR=2;RUN=1;SAF=2;SAP=7.35324;SAR=0;SRF=40;SRP=89.8692;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:33:33,0:33:1339:0:0:0,-9.93399,-120.766 0/0:5:5,0:5:202:0:0:0,-1.50515,-18.5621 0/1:4:2,2:2:80:2:81:-6.48161,0,-6.38745 dDocent_Contig_13277 20 . A G 185.299 . AB=0.326923;ABP=16.5402;AC=2;AF=0.333333;AN=6;AO=22;CIGAR=1X;DP=70;DPB=70;DPRA=0;EPP=50.7827;EPPR=107.241;GTI=0;LEN=1;MEANALT=1;MQM=23.2727;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=0.954545;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=881;QR=1914;RO=48;RPL=0;RPP=50.7827;RPPR=107.241;RPR=22;RUN=1;SAF=22;SAP=50.7827;SAR=0;SRF=48;SRP=107.241;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:48:32,16:32:1284:16:635:-19.1432,0,-101.374 0/1:4:3,1:3:115:1:41:-2.89045,0,-9.52061 0/0:18:13,5:13:515:5:205:0,-0.179365,-41.4571 dDocent_Contig_13278 37 . G A 62.3735 . AB=0.25;ABP=9.52472;AC=1;AF=0.166667;AN=6;AO=3;CIGAR=1X;DP=25;DPB=25;DPRA=1.84615;EPP=9.52472;EPPR=50.7827;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=0;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=122;QR=850;RO=22;RPL=0;RPP=9.52472;RPPR=50.7827;RPR=3;RUN=1;SAF=3;SAP=9.52472;SAR=0;SRF=22;SRP=50.7827;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:12:9,3:9:358:3:122:-7.76013,0,-28.9699 0/0:9:9,0:9:338:0:0:0,-2.70927,-30.7684 0/0:4:4,0:4:154:0:0:0,-1.20412,-14.2294 dDocent_Contig_13279 110 . G T 159.585 . AB=0.222222;ABP=9.04217;AC=3;AF=0.5;AN=6;AO=9;CIGAR=1X;DP=25;DPB=25;DPRA=0.888889;EPP=22.5536;EPPR=37.7539;GTI=0;LEN=1;MEANALT=1;MQM=25.3333;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=0;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=302;QR=528;RO=16;RPL=0;RPP=22.5536;RPPR=37.7539;RPR=9;RUN=1;SAF=0;SAP=22.5536;SAR=9;SRF=0;SRP=37.7539;SRR=16;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:9:9,0:9:304:0:0:0,-2.70927,-27.6885 1/1:7:0,7:0:0:7:232:-15.6665,-2.10721,0 0/1:9:7,2:7:224:2:70:-1.96232,0,-17.7639 dDocent_Contig_13280 18 . A T 1777.35 . AB=0.0810811;ABP=172.209;AC=0;AF=0;AN=6;AO=9;CIGAR=1M8I3M1I2M1X2M1X1M5D18M1X2M3D1M;DP=125;DPB=116.293;DPRA=0;EPP=22.5536;EPPR=52.9542;GTI=0;LEN=1;MEANALT=6;MQM=21;MQMR=60;NS=3;NUMALT=3;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=189;QR=904;RO=23;RPL=0;RPP=22.5536;RPPR=52.9542;RPR=9;RUN=1;SAF=9;SAP=22.5536;SAR=0;SRF=23;SRP=52.9542;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|0:93:14,41,27,7:14:550:41,27,7:1419,911,147:-139.676,-28.5684,-61.4894,-70.0647,0,-107.191,-134.667,-64.617,-106.1,-177.807 0|0:14:0,8,5,0:0:0:8,5,0:293,173,0:-38.0015,-14.0458,-11.6375,-23.9509,0,-22.4458,-38.0015,-14.0458,-23.9509,-38.0015 0|0:18:9,2,3,2:9:354:2,3,2:73,102,42:-5.58015,-2.30867,-30.8836,0,-23.2144,-28.2776,-5.68669,-28.8706,-26.568,-34.232 dDocent_Contig_13281 18 . A G 335.919 . AB=0.2;ABP=18.6449;AC=0;AF=0;AN=6;AO=4;CIGAR=1M1I3M1X7M2X1M;DP=54;DPB=43;DPRA=10;EPP=11.6962;EPPR=63.8115;GTI=0;LEN=1;MEANALT=3;MQM=21;MQMR=60;NS=3;NUMALT=2;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=84;QR=1096;RO=28;RPL=0;RPP=11.6962;RPPR=63.8115;RPR=4;RUN=1;SAF=4;SAP=11.6962;SAR=0;SRF=28;SRP=63.8115;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|0:32:22,0,7:22:857:0,7:0,278:-8.09445,-14.7171,-85.2302,0,-70.5215,-68.4143 0|0:2:0,0,1:0:0:0,1:0,39:-3.43882,-3.43882,-3.43882,-0.30103,-0.30103,0 0|0:20:6,4,9:6:239:4,9:84,361:-25.58,-22.1522,-40.6526,0,-14.5981,-17.1073 dDocent_Contig_13283 107 . N A 61.7412 . AB=0;ABP=0;AC=2;AF=1;AN=2;AO=2;CIGAR=1X;DP=2;DPB=2;DPRA=0;EPP=7.35324;EPPR=0;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=0;NS=1;NUMALT=1;ODDS=5.99146;PAIRED=1;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=65;QR=0;RO=0;RPL=0;RPP=7.35324;RPPR=0;RPR=2;RUN=1;SAF=0;SAP=7.35324;SAR=2;SRF=0;SRP=0;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL ./.:.:.:.:.:.:.:. ./.:.:.:.:.:.:.:. 1/1:2:0,2:0:0:2:65:-6.17303,-0.60206,0 dDocent_Contig_13284 91 . A G 322.061 . AB=0.4;ABP=6.48466;AC=3;AF=0.5;AN=6;AO=16;CIGAR=1X;DP=40;DPB=40;DPRA=0;EPP=37.7539;EPPR=55.1256;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=542;QR=824;RO=24;RPL=16;RPP=37.7539;RPPR=55.1256;RPR=0;RUN=1;SAF=16;SAP=37.7539;SAR=0;SRF=24;SRP=55.1256;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:12:10,2:10:354:2:70:-3.03504,0,-28.5878 0/1:15:4,11:4:119:11:383:-30.2895,0,-6.48892 0/1:13:10,3:10:351:3:89:-4.39069,0,-28.0147 dDocent_Contig_13286 49 . G A 421.445 . AB=0.444444;ABP=3.9754;AC=3;AF=0.5;AN=6;AO=16;CIGAR=1X;DP=36;DPB=36;DPRA=0;EPP=37.7539;EPPR=46.4397;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=637;QR=789;RO=20;RPL=0;RPP=37.7539;RPPR=46.4397;RPR=16;RUN=1;SAF=16;SAP=37.7539;SAR=0;SRF=20;SRP=46.4397;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:20:10,10:10:389:10:399:-30.2473,0,-29.3427 0/1:5:4,1:4:161:1:40:-2.49053,0,-13.3703 0/1:11:6,5:6:239:5:198:-14.8851,0,-18.5735 dDocent_Contig_13287 15 . T C 1476.6 . AB=0.352564;ABP=32.4644;AC=3;AF=0.5;AN=6;AO=55;CIGAR=1X;DP=156;DPB=156;DPRA=0;EPP=122.441;EPPR=222.329;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=0.792079;PAO=0;PQA=0;PQR=0;PRO=0;QA=2213;QR=4035;RO=101;RPL=0;RPP=122.441;RPPR=222.329;RPR=55;RUN=1;SAF=55;SAP=122.441;SAR=0;SRF=101;SRP=222.329;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:92:60,32:60:2409:32:1284:-88.1302,0,-189.252 0/1:30:25,5:25:999:5:203:-9.62216,0,-81.1745 0/1:34:16,18:16:627:18:726:-55.4305,0,-46.5241 dDocent_Contig_13290 19 . G T 277.951 . AB=0.5;ABP=3.0103;AC=3;AF=0.5;AN=6;AO=9;CIGAR=1X;DP=22;DPB=22;DPRA=1.33333;EPP=22.5536;EPPR=31.2394;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=364;QR=522;RO=13;RPL=0;RPP=22.5536;RPPR=31.2394;RPR=9;RUN=1;SAF=9;SAP=22.5536;SAR=0;SRF=13;SRP=31.2394;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:14:7,7:7:280:7:282:-21.538,0,-21.3571 0/0:6:6,0:6:242:0:0:0,-1.80618,-22.1569 1/1:2:0,2:0:0:2:82:-7.77968,-0.60206,0 dDocent_Contig_13291 14 . G C 191.711 . AB=0.166667;ABP=31.9633;AC=2;AF=0.333333;AN=6;AO=5;CIGAR=1X2M1X2M1X;DP=35;DPB=35;DPRA=0;EPP=13.8677;EPPR=48.6112;GTI=0;LEN=1;MEANALT=2.5;MQM=60;MQMR=60;NS=3;NUMALT=2;ODDS=0;PAIRED=0;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=203;QR=825;RO=21;RPL=0;RPP=13.8677;RPPR=48.6112;RPR=5;RUN=1;SAF=5;SAP=13.8677;SAR=0;SRF=21;SRP=48.6112;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|1:22:14,4,3:14:556:4,3:163,119:-9.23909,0,-44.5703,-3.6604,-35.9786,-48.5251 0|0:5:1,0,4:1:40:0,4:0,161:-13.3701,-13.6712,-16.9657,0,-3.69465,-2.49053 0|1:8:6,1,0:6:229:1,0:40,0:-1.50877,0,-18.5039,-3.31495,-18.805,-22.1027 dDocent_Contig_13292 23 . G A 202.809 . AB=0.4;ABP=4.74748;AC=2;AF=0.333333;AN=6;AO=8;CIGAR=1X;DP=32;DPB=32;DPRA=0.833333;EPP=20.3821;EPPR=55.1256;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=322;QR=977;RO=24;RPL=0;RPP=20.3821;RPPR=55.1256;RPR=8;RUN=1;SAF=8;SAP=20.3821;SAR=0;SRF=24;SRP=55.1256;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:6:5,1:5:204:1:41:-2.28839,0,-16.9379 0/0:12:12,0:12:488:0:0:0,-3.61236,-44.2713 0/1:14:7,7:7:285:7:281:-21.4466,0,-21.81 dDocent_Contig_13294 147 . C T 137.593 . AB=0.173913;ABP=45.4956;AC=2;AF=0.333333;AN=6;AO=9;CIGAR=1X;DP=59;DPB=59;DPRA=0;EPP=22.5536;EPPR=111.584;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=360;QR=2002;RO=50;RPL=0;RPP=22.5536;RPPR=111.584;RPR=9;RUN=1;SAF=0;SAP=22.5536;SAR=9;SRF=0;SRP=111.584;SRR=50;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:37:34,3:34:1357:3:123:-0.326678,0,-111.251 0/1:9:4,5:4:162:5:199:-15.5791,0,-12.2577 0/0:13:12,1:12:483:1:38:0,-0.116121,-40.0228 dDocent_Contig_13295 19 . G A 87.6751 . AB=0.116279;ABP=112.998;AC=1;AF=0.166667;AN=6;AO=10;CIGAR=1X;DP=163;DPB=163;DPRA=2.23377;EPP=24.725;EPPR=335.246;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=0.973856;PAO=0;PQA=0;PQR=0;PRO=0;QA=398;QR=6047;RO=153;RPL=0;RPP=24.725;RPPR=335.246;RPR=10;RUN=1;SAF=10;SAP=24.725;SAR=0;SRF=153;SRP=335.246;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:86:76,10:76:3038:10:398:-10.2904,0,-247.615 0/0:23:23,0:23:896:0:0:0,-6.92369,-80.9441 0/0:54:54,0:54:2113:0:0:0,-16.2556,-190.354 dDocent_Contig_13296 8 . G A 1163.32 . AB=0.295652;ABP=44.7215;AC=3;AF=0.5;AN=6;AO=34;CIGAR=1M2X12M;DP=115;DPB=118.933;DPRA=0;EPP=76.8404;EPPR=50.7827;GTI=0;LEN=1;MEANALT=4;MQM=60;MQMR=60;NS=3;NUMALT=4;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=1297;QR=864;RO=22;RPL=0;RPP=76.8404;RPPR=50.7827;RPR=34;RUN=1;SAF=34;SAP=76.8404;SAR=0;SRF=22;SRP=50.7827;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|1:62:11,5,0,31,15:11:433:5,0,31,15:108,0,837,575:-65.8208,-62.2747,-96.4113,-69.1321,-97.9165,-104.774,-11.5777,-40.3852,-47.22,-37.888,-21.8942,-50.6958,-57.553,0,-53.0376 0|1:21:4,3,2,6,6:4:159:3,2,6,6:69,54,162,224:-17.1861,-13.9101,-26.1204,-14.6787,-23.3166,-27.1913,-7.26145,-15.9126,-16.6746,-18.5718,0,-8.65715,-9.42428,-2.00795,-11.3298 0|1:32:7,0,1,9,13:7:272:0,1,9,13:0,25,243,498:-38.8465,-40.9537,-63.321,-39.2787,-61.6457,-61.3447,-24.2654,-46.6282,-44.9558,-43.919,0,-22.4099,-20.7348,-5.72423,-18.4965 dDocent_Contig_13297 8 . G A 61.9985 . AB=0.137255;ABP=61.2994;AC=2;AF=0.333333;AN=6;AO=7;CIGAR=2X;DP=57;DPB=57;DPRA=4.25;EPP=18.2106;EPPR=111.584;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=270;QR=1921;RO=50;RPL=0;RPP=18.2106;RPPR=111.584;RPR=7;RUN=1;SAF=7;SAP=18.2106;SAR=0;SRF=50;SRP=111.584;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|1:27:24,3:24:926:3:117:-2.78257,0,-75.5293 0|0:6:6,0:6:230:0:0:0,-1.80618,-21.0669 0|1:24:20,4:20:765:4:153:-6.91689,0,-61.954 dDocent_Contig_13298 52 . A T 324.702 . AB=0.55;ABP=3.44459;AC=1;AF=0.166667;AN=6;AO=11;CIGAR=1X;DP=43;DPB=43;DPRA=1.73913;EPP=26.8965;EPPR=72.4974;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=0.9375;PAO=0;PQA=0;PQR=0;PRO=0;QA=444;QR=1248;RO=32;RPL=11;RPP=26.8965;RPPR=72.4974;RPR=0;RUN=1;SAF=11;SAP=26.8965;SAR=0;SRF=32;SRP=72.4974;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:13:13,0:13:512:0:0:0,-3.91339,-46.4245 0/0:10:10,0:10:372:0:0:0,-3.0103,-33.8186 0/1:20:9,11:9:364:11:444:-34.2941,0,-27.1039 dDocent_Contig_13300 50 . G A 102.177 . AB=0.357143;ABP=5.49198;AC=2;AF=0.333333;AN=6;AO=5;CIGAR=1X;DP=22;DPB=22;DPRA=0.875;EPP=13.8677;EPPR=39.9253;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=1.73472e-18;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=191;QR=651;RO=17;RPL=5;RPP=13.8677;RPPR=39.9253;RPR=0;RUN=1;SAF=5;SAP=13.8677;SAR=0;SRF=17;SRP=39.9253;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:8:8,0:8:310:0:0:0,-2.40824,-28.2596 0/1:3:1,2:1:41:2:81:-6.78264,0,-3.19148 0/1:11:8,3:8:300:3:110:-6.94868,0,-24.0375 dDocent_Contig_13301 30 . C T 56.3251 . AB=0.333333;ABP=5.18177;AC=1;AF=0.166667;AN=6;AO=3;CIGAR=1X;DP=66;DPB=66;DPRA=0.315789;EPP=9.52472;EPPR=139.813;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=109;QR=2512;RO=63;RPL=0;RPP=9.52472;RPPR=139.813;RPR=3;RUN=1;SAF=3;SAP=9.52472;SAR=0;SRF=63;SRP=139.813;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:42:42,0:42:1681:0:0:0,-12.6433,-151.512 0/0:15:15,0:15:589:0:0:0,-4.51545,-53.3481 0/1:9:6,3:6:242:3:109:-7.45642,0,-19.4472 dDocent_Contig_13306 85 . T C 255.318 . AB=0.234375;ABP=42.2325;AC=2;AF=0.333333;AN=6;AO=16;CIGAR=1X;DP=146;DPB=146;DPRA=0;EPP=37.7539;EPPR=285.302;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=565;QR=4555;RO=130;RPL=16;RPP=37.7539;RPPR=285.302;RPR=0;RUN=1;SAF=16;SAP=37.7539;SAR=0;SRF=130;SRP=285.302;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:82:81,1:81:2858:1:36:0,-21.0862,-253.863 0/1:13:11,2:11:384:2:74:-3.11249,0,-30.9814 0/1:51:38,13:38:1313:13:455:-25.9311,0,-103.119 dDocent_Contig_13308 8 . G A 3375.32 . AB=0.443262;ABP=10.8954;AC=3;AF=0.5;AN=6;AO=125;CIGAR=1X;DP=282;DPB=282;DPRA=0;EPP=274.444;EPPR=343.931;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=4746;QR=6035;RO=157;RPL=0;RPP=274.444;RPPR=343.931;RPR=125;RUN=1;SAF=125;SAP=274.444;SAR=0;SRF=157;SRP=343.931;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:178:102,76:102:3918:76:2871:-204.986,0,-299.129 0/1:29:14,15:14:547:15:569:-42.8195,0,-40.8459 0/1:75:41,34:41:1570:34:1306:-95.2487,0,-118.993 dDocent_Contig_13310 8 . G A 471.939 . AB=0.461538;ABP=3.51141;AC=2;AF=0.333333;AN=6;AO=18;CIGAR=1X;DP=43;DPB=43;DPRA=4.875;EPP=42.0968;EPPR=57.2971;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=686;QR=966;RO=25;RPL=0;RPP=42.0968;RPPR=57.2971;RPR=18;RUN=1;SAF=18;SAP=42.0968;SAR=0;SRF=25;SRP=57.2971;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:31:16,15:16:615:15:570:-42.3072,0,-46.3576 0/0:4:4,0:4:156:0:0:0,-1.20412,-14.4173 0/1:8:5,3:5:195:3:116:-8.40946,0,-15.516 dDocent_Contig_13311 7 . A G 78.5745 . AB=0.666667;ABP=4.45795;AC=1;AF=0.166667;AN=6;AO=4;CIGAR=1X;DP=40;DPB=40;DPRA=0.352941;EPP=11.6962;EPPR=81.1833;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=121;QR=1384;RO=36;RPL=0;RPP=11.6962;RPPR=81.1833;RPR=4;RUN=1;SAF=4;SAP=11.6962;SAR=0;SRF=36;SRP=81.1833;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:6:2,4:2:78:4:121:-9.38029,0,-5.59729 0/0:25:25,0:25:965:0:0:0,-7.52575,-87.1645 0/0:9:9,0:9:341:0:0:0,-2.70927,-31.0449 dDocent_Contig_13312 77 . T C 127.629 . AB=0.35;ABP=6.91895;AC=2;AF=0.333333;AN=6;AO=8;CIGAR=1X;DP=56;DPB=56;DPRA=0;EPP=20.3821;EPPR=107.241;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=275;QR=1645;RO=48;RPL=8;RPP=20.3821;RPPR=107.241;RPR=0;RUN=1;SAF=8;SAP=20.3821;SAR=0;SRF=48;SRP=107.241;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:18:12,6:12:414:6:209:-13.7316,0,-32.1714 0/1:2:1,1:1:36:1:31:-2.49739,0,-2.99621 0/0:36:35,1:35:1195:1:35:0,-7.33845,-104.355 dDocent_Contig_13313 27 . A G 518.097 . AB=0.487179;ABP=3.06598;AC=3;AF=0.5;AN=6;AO=19;CIGAR=1X;DP=39;DPB=39;DPRA=0;EPP=44.2683;EPPR=46.4397;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=3.46945e-18;PAIRED=0.894737;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=755;QR=793;RO=20;RPL=0;RPP=44.2683;RPPR=46.4397;RPR=19;RUN=1;SAF=19;SAP=44.2683;SAR=0;SRF=20;SRP=46.4397;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:17:8,9:8:323:9:355:-27.1917,0,-24.3212 0/1:20:11,9:11:430:9:361:-26.8333,0,-33.0287 0/1:2:1,1:1:40:1:39:-3.2945,0,-3.39362 dDocent_Contig_13314 15 . G A 145.509 . AB=0.2;ABP=34.2795;AC=2;AF=0.333333;AN=6;AO=8;CIGAR=1X;DP=57;DPB=57;DPRA=1.17647;EPP=20.3821;EPPR=109.412;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=326;QR=1971;RO=49;RPL=0;RPP=20.3821;RPPR=109.412;RPR=8;RUN=1;SAF=8;SAP=20.3821;SAR=0;SRF=49;SRP=109.412;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:29:24,5:24:968:5:205:-10.1051,0,-78.6907 0/1:11:8,3:8:318:3:121:-7.96866,0,-25.6739 0/0:17:17,0:17:685:0:0:0,-5.11751,-61.9797 dDocent_Contig_13316 30 . C A 528.516 . AB=0.285714;ABP=33.7211;AC=3;AF=0.5;AN=6;AO=22;CIGAR=1M1X1M;DP=77;DPB=75.3333;DPRA=0;EPP=50.7827;EPPR=111.584;GTI=0;LEN=1;MEANALT=1.33333;MQM=60;MQMR=60;NS=3;NUMALT=2;ODDS=6.93889e-18;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=881;QR=1966;RO=50;RPL=0;RPP=50.7827;RPPR=111.584;RPR=22;RUN=1;SAF=22;SAP=50.7827;SAR=0;SRF=50;SRP=111.584;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|1:26:17,0,9:17:653:0,9:0,359:-24.8429,-29.9604,-83.5516,0,-53.9845,-51.2753 0|1:19:10,0,9:10:401:0,9:0,362:-27.2244,-30.2347,-63.2731,0,-33.4396,-30.7303 0|1:32:23,5,4:23:912:5,4:201,160:-6.30419,-1.68597,-75.2436,0,-63.5685,-73.9477 dDocent_Contig_13317 61 . G A 621.698 . AB=0;ABP=0;AC=6;AF=1;AN=6;AO=203;CIGAR=1X2M;DP=269;DPB=269;DPRA=0;EPP=443.819;EPPR=87.6977;GTI=0;LEN=1;MEANALT=3;MQM=7.28079;MQMR=7;NS=3;NUMALT=3;ODDS=6.93889e-18;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=1478;QR=1513;RO=39;RPL=203;RPP=443.819;RPPR=87.6977;RPR=0;RUN=1;SAF=203;SAP=443.819;SAR=0;SRF=39;SRP=87.6977;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 1|1:91:6,8,74,3:6:240:8,74,3:311,551,121:-28.7289,-25.2481,-24.8142,-20.3128,-16.9773,0,-29.5481,-26.2353,-21.2935,-30.6189 1|1:104:23,7,72,2:23:883:7,72,2:276,504,82:-14.3097,-16.3271,-21.7752,-14.1478,-16.7646,0,-20.5752,-23.2243,-21.0171,-27.527 1|1:74:10,0,57,5:10:390:0,57,5:0,423,202:-18.5291,-21.5394,-24.8297,-13.8668,-17.1587,0,-19.8936,-23.1843,-15.5133,-21.6792 dDocent_Contig_13318 58 . G C 57.348 . 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AB=0.125;ABP=32.3252;AC=0;AF=0;AN=6;AO=3;CIGAR=1X2M1X4M1X1M;DP=110;DPB=110;DPRA=0;EPP=9.52472;EPPR=79.0118;GTI=0;LEN=1;MEANALT=6;MQM=60;MQMR=60;NS=3;NUMALT=9;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=118;QR=1374;RO=35;RPL=0;RPP=9.52472;RPPR=79.0118;RPR=3;RUN=1;SAF=3;SAP=9.52472;SAR=0;SRF=35;SRP=79.0118;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|0:59:23,1,0,6,0,0,19,5,0,3:23:909:1,0,6,0,0,19,5,0,3:37,0,230,0,0,741,204,0,122:-53.9972,-57.8941,-132.401,-60.9209,-132.702,-135.728,-42.0462,-113.828,-116.855,-115.049,-60.9209,-132.702,-135.728,-116.855,-135.728,-60.9209,-132.702,-135.728,-116.855,-135.728,-135.728,0,-71.7911,-74.8178,-55.9439,-74.8178,-74.8178,-69.0982,-44.0848,-115.868,-118.895,-100.021,-118.895,-118.895,-57.9828,-117.39,-60.9209,-132.702,-135.728,-116.855,-135.728,-135.728,-74.8178,-118.895,-135.728,-50.8551,-122.637,-125.664,-106.79,-125.664,-125.664,-64.7526,-108.83,-125.664,-124.761 0|0:24:2,5,3,0,3,3,6,0,0,2:2:79:5,3,0,3,3,6,0,0,2:196,118,0,114,114,238,0,0,82:-28.609,-13.0927,-18.0889,-19.5041,-9.88711,-25.1023,-29.211,-19.594,-26.0054,-35.7123,-19.8638,-10.2471,-16.6583,-26.3649,-25.4618,-19.8639,-10.2473,-16.6584,-26.365,-17.0181,-25.4619,-9.61731,0,-6.41159,-16.1188,-6.7718,-6.77191,-14.3126,-29.211,-19.594,-26.0054,-35.7123,-26.3649,-26.365,-16.1188,-35.7123,-29.211,-19.594,-26.0054,-35.7123,-26.3649,-26.365,-16.1188,-35.7123,-35.7123,-22.4411,-12.8238,-19.2354,-28.9425,-19.595,-19.5951,-9.34825,-28.9425,-28.9425,-28.3404 0|0:27:10,2,0,0,0,4,4,0,2,5:10:386:2,0,0,0,4,4,0,2,5:74,0,0,0,146,157,0,66,204:-13.8325,-10.7902,-41.8889,-16.8428,-42.491,-48.5439,-16.8428,-42.491,-48.5439,-48.5439,-16.8428,-42.491,-48.5439,-48.5439,-48.5439,-4.9214,-30.5684,-36.6208,-36.6208,-36.6208,-35.4167,-3.92654,-29.5767,-35.6296,-35.6296,-35.6296,-23.7068,-34.4255,-16.8428,-42.491,-48.5439,-48.5439,-48.5439,-36.6208,-35.6296,-48.5439,-11.5166,-37.1627,-43.2152,-43.2152,-43.2152,-31.2932,-30.3016,-43.2152,-42.6131,0,-25.6535,-31.7068,-31.7068,-31.7068,-19.7833,-18.7908,-31.7068,-26.3785,-30.2016 dDocent_Contig_13321 86 . C T 40.3207 . AB=0.153846;ABP=30.0702;AC=1;AF=0.166667;AN=6;AO=4;CIGAR=1X;DP=94;DPB=94;DPRA=0.764706;EPP=11.6962;EPPR=198.443;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=1.73472e-18;PAIRED=1;PAIREDR=0.988889;PAO=0;PQA=0;PQR=0;PRO=0;QA=148;QR=3246;RO=90;RPL=4;RPP=11.6962;RPPR=198.443;RPR=0;RUN=1;SAF=4;SAP=11.6962;SAR=0;SRF=90;SRP=198.443;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:67:67,0:67:2408:0:0:0,-20.169,-216.962 0/0:1:1,0:1:37:0:0:0,-0.30103,-3.69783 0/1:26:22,4:22:801:4:148:-5.85519,0,-64.5889 dDocent_Contig_13324 85 . A G 295.114 . AB=0.394737;ABP=6.66752;AC=3;AF=0.5;AN=6;AO=15;CIGAR=1X;DP=38;DPB=38;DPRA=0;EPP=35.5824;EPPR=52.9542;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=504;QR=770;RO=23;RPL=15;RPP=35.5824;RPPR=52.9542;RPR=0;RUN=1;SAF=15;SAP=35.5824;SAR=0;SRF=23;SRP=52.9542;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:17:8,9:8:281:9:307:-22.8443,0,-20.5131 0/1:3:1,2:1:29:2:67:-5.45995,0,-1.99657 0/1:18:14,4:14:460:4:130:-6.60253,0,-36.296 dDocent_Contig_13326 28 . A C 93.0842 . AB=0.277778;ABP=10.7311;AC=2;AF=0.333333;AN=6;AO=5;CIGAR=1X3M1X;DP=31;DPB=31;DPRA=0.692308;EPP=13.8677;EPPR=59.4686;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=194;QR=1021;RO=26;RPL=0;RPP=13.8677;RPPR=59.4686;RPR=5;RUN=1;SAF=5;SAP=13.8677;SAR=0;SRF=26;SRP=59.4686;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|0:13:13,0:13:510:0:0:0,-3.91339,-46.2468 0|1:4:3,1:3:120:1:37:-2.49371,0,-9.98378 0|1:14:10,4:10:391:4:157:-10.2935,0,-31.3297 dDocent_Contig_13327 35 . C T 2886.76 . AB=0.267606;ABP=69.6225;AC=3;AF=0.5;AN=6;AO=38;CIGAR=2M1X13M;DP=142;DPB=105.688;DPRA=0;EPP=85.5263;EPPR=44.2683;GTI=0;LEN=1;MEANALT=2.66667;MQM=60;MQMR=60;NS=3;NUMALT=2;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=1504;QR=732;RO=19;RPL=0;RPP=85.5263;RPPR=44.2683;RPR=38;RUN=1;SAF=38;SAP=85.5263;SAR=0;SRF=19;SRP=44.2683;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|1:84:10,47,26:10:384:47,26:1629,1027:-182.355,-53.0122,-70.386,-100.838,0,-124.541 0|1:40:6,26,8:6:232:26,8:906,317:-78.8715,-7.04577,-18.2712,-54.574,0,-71.2291 0|1:18:3,10,4:3:116:10,4:369,160:-32.9728,-3.67687,-10.2131,-20.6812,0,-29.0145 dDocent_Contig_13329 15 . T C 50.4932 . AB=0.272727;ABP=7.94546;AC=2;AF=0.333333;AN=6;AO=3;CIGAR=1X;DP=22;DPB=22;DPRA=0.5;EPP=9.52472;EPPR=44.2683;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=123;QR=760;RO=19;RPL=0;RPP=9.52472;RPPR=44.2683;RPR=3;RUN=1;SAF=3;SAP=9.52472;SAR=0;SRF=19;SRP=44.2683;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:11:11,0:11:437:0:0:0,-3.31133,-39.6852 0/1:8:6,2:6:245:2:82:-5.37144,0,-20.0212 0/1:3:2,1:2:78:1:41:-3.19148,0,-6.50021 dDocent_Contig_13330 8 . G A 129.617 . AB=0.111732;ABP=237.396;AC=1;AF=0.166667;AN=6;AO=27;CIGAR=1X;DP=376;DPB=376;DPRA=0;EPP=61.6401;EPPR=758.683;GTI=0;LEN=1;MEANALT=1.33333;MQM=60;MQMR=59.9799;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=0.939655;PAO=0;PQA=0;PQR=0;PRO=0;QA=1021;QR=13231;RO=348;RPL=0;RPP=61.6401;RPPR=758.683;RPR=27;RUN=1;SAF=27;SAP=61.6401;SAR=0;SRF=348;SRP=758.683;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:179:158,20:158:6024:20:757:-14.4845,0,-488.124 0/0:81:77,4:77:2899:4:153:0,-10.2418,-246.947 0/0:116:113,3:113:4308:3:111:0,-24.5667,-377.432 dDocent_Contig_13331 7 . A G 694.17 . AB=0.0810811;ABP=115.809;AC=0;AF=0;AN=6;AO=6;CIGAR=2X1M1X4M1X4M2I6M;DP=93;DPB=98.2105;DPRA=0;EPP=16.0391;EPPR=96.3836;GTI=0;LEN=1;MEANALT=5;MQM=50;MQMR=60;NS=3;NUMALT=5;ODDS=0;PAIRED=0;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=223;QR=1656;RO=43;RPL=0;RPP=16.0391;RPPR=96.3836;RPR=6;RUN=1;SAF=6;SAP=16.0391;SAR=0;SRF=43;SRP=96.3836;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|0:51:28,0,0,0,2,17:28:1076:0,0,0,2,17:0,0,0,77,674:-47.0866,-55.5154,-143.845,-55.5154,-143.845,-143.845,-55.5154,-143.845,-143.845,-143.845,-49.2149,-137.545,-137.545,-137.545,-136.943,0,-88.3601,-88.3601,-88.3601,-82.0592,-83.2426 0|0:23:4,2,3,4,4,6:4:149:2,3,4,4,6:65,96,118,146,211:-15.968,-11.9265,-23.5258,-9.44058,-16.3974,-20.7389,-8.01757,-14.9738,-12.4892,-19.0132,-5.35374,-12.3123,-9.82656,-8.40372,-16.3535,0,-6.9602,-4.47472,-3.05344,-0.386591,-10.3991 0|0:19:11,0,0,2,0,5:11:431:0,0,2,0,5:0,0,72,0,185:-11.8295,-15.1408,-50.5995,-15.1408,-50.5995,-50.5995,-9.73414,-45.1889,-45.1889,-44.5868,-15.1408,-50.5995,-50.5995,-45.1889,-50.5995,0,-35.4747,-35.4747,-30.0668,-35.4747,-33.9696 dDocent_Contig_13332 13 . C A 184.898 . AB=0.264706;ABP=19.3602;AC=2;AF=0.333333;AN=6;AO=9;CIGAR=1X;DP=52;DPB=52;DPRA=0.944444;EPP=22.5536;EPPR=96.3836;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=0.953488;PAO=0;PQA=0;PQR=0;PRO=0;QA=350;QR=1734;RO=43;RPL=0;RPP=22.5536;RPPR=96.3836;RPR=9;RUN=1;SAF=9;SAP=22.5536;SAR=0;SRF=43;SRP=96.3836;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:22:18,4:18:728:4:162:-8.3443,0,-59.222 0/1:12:7,5:7:281:5:188:-13.6684,0,-22.0496 0/0:18:18,0:18:725:0:0:0,-5.41854,-65.5754 dDocent_Contig_13334 17 . T A 1634.2 . AB=0.710526;ABP=32.268;AC=3;AF=0.5;AN=6;AO=54;CIGAR=1X4M;DP=76;DPB=76;DPRA=0;EPP=120.27;EPPR=39.9253;GTI=0;LEN=1;MEANALT=1.33333;MQM=60;MQMR=60;NS=3;NUMALT=2;ODDS=0;PAIRED=0.555556;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=2108;QR=643;RO=17;RPL=0;RPP=120.27;RPPR=39.9253;RPR=54;RUN=1;SAF=54;SAP=120.27;SAR=0;SRF=17;SRP=39.9253;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|1:40:9,0,31:9:341:0,31:0,1217:-97.7698,-100.479,-128.434,0,-28.3369,-19.005 0|1:22:6,5,11:6:225:5,11:199,421:-32.727,-18.1426,-35.0645,0,-2.02111,-15.106 0|1:14:2,0,12:2:77:0,12:0,470:-38.4332,-39.0352,-45.3567,0,-6.70708,-3.09472 dDocent_Contig_13335 13 . A T 173.773 . AB=0.138614;ABP=117.582;AC=1;AF=0.166667;AN=6;AO=14;CIGAR=1X;DP=152;DPB=152;DPRA=3.96078;EPP=33.4109;EPPR=302.673;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=544;QR=5439;RO=138;RPL=0;RPP=33.4109;RPPR=302.673;RPR=14;RUN=1;SAF=14;SAP=33.4109;SAR=0;SRF=138;SRP=302.673;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:101:87,14:87:3454:14:544:-18.9001,0,-280.511 0/0:8:8,0:8:313:0:0:0,-2.40824,-28.5329 0/0:43:43,0:43:1672:0:0:0,-12.9443,-150.714 dDocent_Contig_13336 8 . G A 2600.56 . AB=0.648936;ABP=21.1213;AC=4;AF=0.666667;AN=6;AO=86;CIGAR=1X;DP=120;DPB=120;DPRA=0;EPP=189.757;EPPR=76.8404;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=6.93889e-18;PAIRED=0.976744;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=3274;QR=1288;RO=34;RPL=0;RPP=189.757;RPPR=76.8404;RPR=86;RUN=1;SAF=86;SAP=189.757;SAR=0;SRF=34;SRP=76.8404;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:65:24,41:24:909:41:1554:-120.565,0,-62.5583 1/1:26:1,25:1:37:25:949:-82.0262,-4.12895,0 0/1:29:9,20:9:342:20:771:-60.9878,0,-22.4064 dDocent_Contig_13337 111 . A T 45.2027 . AB=0.2;ABP=18.6449;AC=2;AF=0.333333;AN=6;AO=4;CIGAR=1X;DP=22;DPB=22;DPRA=5;EPP=11.6962;EPPR=42.0968;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=133;QR=652;RO=18;RPL=0;RPP=11.6962;RPPR=42.0968;RPR=4;RUN=1;SAF=0;SAP=11.6962;SAR=4;SRF=0;SRP=42.0968;SRR=18;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:11:10,1:10:363:1:36:-0.286945,0,-29.7048 0/0:2:2,0:2:72:0:0:0,-0.60206,-6.83672 0/1:9:6,3:6:217:3:97:-6.34101,0,-17.1724 dDocent_Contig_13338 32 . C A 2801.49 . AB=0.590604;ABP=13.6345;AC=4;AF=0.666667;AN=6;AO=88;CIGAR=6M1X4M;DP=149;DPB=154.364;DPRA=0;EPP=194.1;EPPR=76.8404;GTI=0;LEN=1;MEANALT=5;MQM=60;MQMR=60;NS=3;NUMALT=3;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=3489;QR=1324;RO=34;RPL=0;RPP=194.1;RPPR=76.8404;RPR=88;RUN=1;SAF=88;SAP=194.1;SAR=0;SRF=34;SRP=76.8404;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|1:65:22,1,1,41:22:872:1,1,41:35,40,1646:-129.024,-132.8,-204.274,-132.351,-201.28,-203.826,0,-68.9504,-68.5009,-59.454 0|1:42:8,3,6,20:8:315:3,6,20:114,229,767:-60.5427,-53.6013,-78.6161,-44.1628,-60.7318,-68.275,0,-16.5738,-7.13489,-19.903 1|1:42:4,3,6,27:4:137:3,6,27:97,240,1076:-96.1054,-89.4922,-99.7037,-77.5371,-80.8345,-86.846,-8.68366,-11.9836,0,-11.6699 dDocent_Contig_13339 7 . A C 1356.55 . AB=0.376812;ABP=21.2003;AC=3;AF=0.5;AN=6;AO=52;CIGAR=1X;DP=138;DPB=138;DPRA=0;EPP=115.927;EPPR=189.757;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=2019;QR=3274;RO=86;RPL=0;RPP=115.927;RPPR=189.757;RPR=52;RUN=1;SAF=52;SAP=115.927;SAR=0;SRF=86;SRP=189.757;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:94:52,42:52:1982:42:1630:-118.666,0,-150.322 0/1:19:14,5:14:530:5:194:-12.1133,0,-42.3228 0/1:25:20,5:20:762:5:195:-10.3984,0,-61.3804 dDocent_Contig_13340 104 . N T 65.5375 . AB=0;ABP=0;AC=2;AF=1;AN=2;AO=2;CIGAR=4X;DP=2;DPB=2;DPRA=0;EPP=7.35324;EPPR=0;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=0;NS=1;NUMALT=1;ODDS=5.99146;PAIRED=1;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=69;QR=0;RO=0;RPL=0;RPP=7.35324;RPPR=0;RPR=2;RUN=1;SAF=0;SAP=7.35324;SAR=2;SRF=0;SRP=0;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 1|1:2:0,2:0:0:2:69:-6.55266,-0.60206,0 .:.:.:.:.:.:.:. .:.:.:.:.:.:.:. dDocent_Contig_13342 13 . C T 60.4708 . AB=0.142857;ABP=41.7866;AC=1;AF=0.166667;AN=6;AO=5;CIGAR=1X;DP=45;DPB=45;DPRA=7;EPP=13.8677;EPPR=89.8692;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=197;QR=1566;RO=40;RPL=0;RPP=13.8677;RPPR=89.8692;RPR=5;RUN=1;SAF=5;SAP=13.8677;SAR=0;SRF=40;SRP=89.8692;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:35:30,5:30:1172:5:197:-7.56984,0,-95.228 0/0:6:6,0:6:237:0:0:0,-1.80618,-21.7035 0/0:4:4,0:4:157:0:0:0,-1.20412,-14.5079 dDocent_Contig_13343 8 . G A 1602.76 . AB=0.156627;ABP=88.0117;AC=1;AF=0.166667;AN=6;AO=13;CIGAR=1M1X6M;DP=141;DPB=120.75;DPRA=0;EPP=31.2394;EPPR=133.299;GTI=0;LEN=1;MEANALT=3;MQM=60;MQMR=60;NS=3;NUMALT=3;ODDS=0;PAIRED=0.0769231;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=498;QR=2305;RO=60;RPL=0;RPP=31.2394;RPPR=133.299;RPR=13;RUN=1;SAF=13;SAP=31.2394;SAR=0;SRF=60;SRP=133.299;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|0:47:33,12,1,1:33:1269:12,1,1:438,39,25:-25.8871,0,-100.63,-32.6128,-101.036,-136.514,-33.8806,-102.297,-134.869,-137.774 0|1:36:3,16,12,5:3:109:16,12,5:540,459,197:-71.601,-28.7675,-32.8484,-34.8277,0,-40.1177,-56.291,-21.4537,-27.5117,-63.6872 0|0:58:24,26,0,8:24:927:26,0,8:927,0,308:-68.311,0,-68.3091,-75.5357,-76.1359,-151.68,-50.2427,-50.8498,-126.392,-123.984 dDocent_Contig_13344 10 . C T 232.627 . AB=0.183099;ABP=64.9431;AC=1;AF=0.166667;AN=6;AO=17;CIGAR=1X;DP=130;DPB=130;DPRA=0;EPP=39.9253;EPPR=248.387;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=665;QR=4414;RO=113;RPL=0;RPP=39.9253;RPPR=248.387;RPR=17;RUN=1;SAF=17;SAP=39.9253;SAR=0;SRF=113;SRP=248.387;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:71:58,13:58:2316:13:509:-24.7854,0,-187.227 0/0:31:29,2:29:1097:2:77:0,-2.02279,-91.715 0/0:28:26,2:26:1001:2:79:0,-0.931208,-82.8863 dDocent_Contig_13346 107 . N G 64.2442 . AB=0;ABP=0;AC=2;AF=1;AN=2;AO=2;CIGAR=1X;DP=2;DPB=2;DPRA=0;EPP=7.35324;EPPR=0;GTI=0;LEN=1;MEANALT=1;MQM=40;MQMR=0;NS=1;NUMALT=1;ODDS=5.99146;PAIRED=1;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=70;QR=0;RO=0;RPL=0;RPP=7.35324;RPPR=0;RPR=2;RUN=1;SAF=0;SAP=7.35324;SAR=2;SRF=0;SRP=0;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 1/1:2:0,2:0:0:2:70:-6.42333,-0.60206,0 ./.:.:.:.:.:.:.:. ./.:.:.:.:.:.:.:. dDocent_Contig_13347 23 . C A 552.863 . AB=0.194631;ABP=123.695;AC=3;AF=0.5;AN=6;AO=29;CIGAR=1X;DP=149;DPB=149;DPRA=0;EPP=65.983;EPPR=263.587;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=59.775;NS=3;NUMALT=1;ODDS=6.93889e-18;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=1162;QR=4794;RO=120;RPL=0;RPP=65.983;RPPR=263.587;RPR=29;RUN=1;SAF=29;SAP=65.983;SAR=0;SRF=120;SRP=263.587;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:89:71,18:71:2863:18:719:-38.245,0,-230.88 0/1:21:17,4:17:666:4:159:-8.37032,0,-53.9451 0/1:39:32,7:32:1265:7:284:-14.1938,0,-102.371 dDocent_Contig_13348 157 . G C 47.186 . AB=0.230769;ABP=11.1951;AC=1;AF=0.25;AN=4;AO=3;CIGAR=1X;DP=25;DPB=25;DPRA=1.08333;EPP=9.52472;EPPR=50.7827;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=2;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=114;QR=851;RO=22;RPL=0;RPP=9.52472;RPPR=50.7827;RPR=3;RUN=1;SAF=0;SAP=9.52472;SAR=3;SRF=0;SRP=50.7827;SRR=22;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:12:12,0:12:457:0:0:0,-3.61236,-41.4782 ./.:.:.:.:.:.:.:. 0/1:13:10,3:10:394:3:114:-6.71859,0,-31.9061 dDocent_Contig_13351 107 . N T 212.044 . AB=0;ABP=0;AC=2;AF=1;AN=2;AO=7;CIGAR=1X;DP=7;DPB=7;DPRA=0;EPP=18.2106;EPPR=0;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=0;NS=1;NUMALT=1;ODDS=9.4572;PAIRED=1;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=232;QR=0;RO=0;RPL=0;RPP=18.2106;RPPR=0;RPR=7;RUN=1;SAF=0;SAP=18.2106;SAR=7;SRF=0;SRP=0;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 1/1:7:0,7:0:0:7:232:-21.2044,-2.10721,0 ./.:.:.:.:.:.:.:. ./.:.:.:.:.:.:.:. dDocent_Contig_13353 164 . G A 69.5065 . AB=0.15625;ABP=35.8538;AC=1;AF=0.166667;AN=6;AO=5;CIGAR=1X;DP=49;DPB=49;DPRA=3.76471;EPP=13.8677;EPPR=98.5551;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=197;QR=1776;RO=44;RPL=5;RPP=13.8677;RPPR=98.5551;RPR=0;RUN=1;SAF=0;SAP=13.8677;SAR=5;SRF=0;SRP=98.5551;SRR=44;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:32:27,5:27:1086:5:197:-8.47344,0,-88.3937 0/0:4:4,0:4:162:0:0:0,-1.20412,-14.9667 0/0:13:13,0:13:528:0:0:0,-3.91339,-47.8671 dDocent_Contig_13355 107 . N T 979.956 . AB=0.866667;ABP=20.5268;AC=6;AF=1;AN=6;AO=34;CIGAR=1X3M;DP=36;DPB=36;DPRA=0;EPP=76.8404;EPPR=0;GTI=0;LEN=1;MEANALT=1.33333;MQM=60;MQMR=0;NS=3;NUMALT=2;ODDS=0;PAIRED=1;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=1074;QR=0;RO=0;RPL=0;RPP=76.8404;RPPR=0;RPR=34;RUN=1;SAF=0;SAP=76.8404;SAR=34;SRF=0;SRP=0;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 1|1:19:0,0,19:0:0:0,19:0,642:-58.0971,-58.0971,-58.0971,-5.71957,-5.71957,0 1|1:2:0,0,2:0:0:0,2:0,60:-5.69857,-5.69857,-5.69857,-0.60206,-0.60206,0 1|1:15:0,2,13:0:0:2,13:70,372:-35.5486,-29.8446,-29.2425,-6.04534,0,-2.13195 dDocent_Contig_13356 53 . T G 621.309 . AB=0.390625;ABP=9.66043;AC=3;AF=0.5;AN=6;AO=25;CIGAR=1X;DP=64;DPB=64;DPRA=0;EPP=57.2971;EPPR=87.6977;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=941;QR=1505;RO=39;RPL=25;RPP=57.2971;RPPR=87.6977;RPR=0;RUN=1;SAF=25;SAP=57.2971;SAR=0;SRF=39;SRP=87.6977;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:48:25,23:25:957:23:862:-63.4485,0,-71.9875 0/1:10:9,1:9:354:1:40:-0.985379,0,-29.2095 0/1:6:5,1:5:194:1:39:-2.09038,0,-16.0263 dDocent_Contig_13360 8 . G A 178.536 . AB=0.285714;ABP=16.9698;AC=2;AF=0.333333;AN=6;AO=10;CIGAR=1X;DP=47;DPB=47;DPRA=1.45833;EPP=24.725;EPPR=83.3548;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=3.46945e-18;PAIRED=0.1;PAIREDR=0.702703;PAO=0;PQA=0;PQR=0;PRO=0;QA=347;QR=1400;RO=37;RPL=0;RPP=24.725;RPPR=83.3548;RPR=10;RUN=1;SAF=10;SAP=24.725;SAR=0;SRF=37;SRP=83.3548;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:28:21,7:21:785:7:238:-13.3161,0,-62.5423 0/1:7:4,3:4:152:3:109:-8.06036,0,-11.9424 0/0:12:12,0:12:463:0:0:0,-3.61236,-42.0215 dDocent_Contig_13361 118 . C T 33.3576 . AB=0;ABP=0;AC=2;AF=0.333333;AN=6;AO=6;CIGAR=2X;DP=85;DPB=85;DPRA=2.53571;EPP=16.0391;EPPR=165.871;GTI=0;LEN=1;MEANALT=2;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=213;QR=2620;RO=75;RPL=0;RPP=16.0391;RPPR=165.871;RPR=6;RUN=1;SAF=0;SAP=16.0391;SAR=6;SRF=0;SRP=165.871;SRR=75;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|0:69:61,5:61:2145:5:178:0,-3.85959,-176.95 1|1:2:0,1:0:0:1:35:-3.15874,-0.30103,0 0|0:14:14,0:14:475:0:0:0,-4.21442,-43.0725 dDocent_Contig_13362 167 . C T 61.2015 . AB=0;ABP=0;AC=0;AF=0;AN=6;AO=4;CIGAR=2X;DP=55;DPB=55;DPRA=0;EPP=11.6962;EPPR=79.0118;GTI=0;LEN=1;MEANALT=2.5;MQM=18;MQMR=54.5143;NS=3;NUMALT=2;ODDS=0;PAIRED=0;PAIREDR=0.885714;PAO=0;PQA=0;PQR=0;PRO=0;QA=138;QR=1264;RO=35;RPL=4;RPP=11.6962;RPPR=79.0118;RPR=0;RUN=1;SAF=0;SAP=11.6962;SAR=4;SRF=0;SRP=79.0118;SRR=35;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|0:23:18,1,4:18:636:1,4:35,161:0,-4.08534,-55.8121,-4.19059,-54.8493,-54.9474 0|0:6:1,0,5:1:37:0,5:0,186:-7.73524,-8.03627,-11.0903,0,-3.3968,-1.89165 0|0:26:16,3,6:16:591:3,6:103,243:0,-0.865897,-38.4656,-2.92075,-37.455,-39.557 dDocent_Contig_13363 27 . A C 219.289 . AB=0.190476;ABP=55.4358;AC=2;AF=0.333333;AN=6;AO=12;CIGAR=1X;DP=66;DPB=66;DPRA=10.5;EPP=29.068;EPPR=120.27;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=485;QR=2132;RO=54;RPL=0;RPP=29.068;RPPR=120.27;RPR=12;RUN=1;SAF=12;SAP=29.068;SAR=0;SRF=54;SRP=120.27;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:48:38,10:38:1493:10:403:-22.1795,0,-120.163 0/0:3:3,0:3:113:0:0:0,-0.90309,-10.536 0/1:15:13,2:13:526:2:82:-3.26423,0,-43.1713 dDocent_Contig_13365 20 . A T 2654.32 . AB=0.516484;ABP=3.43982;AC=3;AF=0.5;AN=6;AO=94;CIGAR=1X;DP=182;DPB=182;DPRA=0;EPP=207.129;EPPR=194.1;GTI=0;LEN=1;MEANALT=1;MQM=59.9681;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=3610;QR=3403;RO=88;RPL=0;RPP=207.129;RPPR=194.1;RPR=94;RUN=1;SAF=94;SAP=207.129;SAR=0;SRF=88;SRP=194.1;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:107:37,70:37:1431:70:2704:-211.302,0,-96.841 0/1:12:7,5:7:272:5:196:-14.4025,0,-21.234 0/1:63:44,19:44:1700:19:710:-45.2513,0,-134.283 dDocent_Contig_13366 18 . A G 308.729 . AB=0.342105;ABP=11.239;AC=3;AF=0.5;AN=6;AO=13;CIGAR=1X;DP=38;DPB=38;DPRA=0;EPP=31.2394;EPPR=57.2971;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=0;PAIREDR=0.84;PAO=0;PQA=0;PQR=0;PRO=0;QA=518;QR=964;RO=25;RPL=0;RPP=31.2394;RPPR=57.2971;RPR=13;RUN=1;SAF=13;SAP=31.2394;SAR=0;SRF=25;SRP=57.2971;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:17:12,5:12:483:5:193:-12.62,0,-38.7032 0/1:6:5,1:5:174:1:41:-2.28839,0,-14.1887 0/1:15:8,7:8:307:7:284:-21.4185,0,-23.4709 dDocent_Contig_13367 107 . N T 81.1953 . AB=0;ABP=0;AC=2;AF=1;AN=2;AO=3;CIGAR=1X;DP=3;DPB=3;DPRA=0;EPP=9.52472;EPPR=0;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=0;NS=1;NUMALT=1;ODDS=6.68461;PAIRED=1;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=87;QR=0;RO=0;RPL=0;RPP=9.52472;RPPR=0;RPR=3;RUN=1;SAF=0;SAP=9.52472;SAR=3;SRF=0;SRP=0;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL ./.:.:.:.:.:.:.:. 1/1:3:0,3:0:0:3:87:-8.11899,-0.90309,0 ./.:.:.:.:.:.:.:. dDocent_Contig_13368 16 . C A 161.612 . AB=0.384615;ABP=4.51363;AC=3;AF=0.5;AN=6;AO=6;CIGAR=1X;DP=23;DPB=23;DPRA=0.777778;EPP=16.0391;EPPR=39.9253;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=232;QR=688;RO=17;RPL=0;RPP=16.0391;RPPR=39.9253;RPR=6;RUN=1;SAF=6;SAP=16.0391;SAR=0;SRF=17;SRP=39.9253;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:13:8,5:8:323:5:198:-14.2844,0,-25.5252 1/1:1:0,1:0:0:1:34:-3.39891,-0.30103,0 0/0:9:9,0:9:365:0:0:0,-2.70927,-33.2146 dDocent_Contig_13369 120 . A C 97.5434 . AB=0.333333;ABP=6.62942;AC=1;AF=0.166667;AN=6;AO=7;CIGAR=1X;DP=65;DPB=65;DPRA=0;EPP=18.2106;EPPR=128.956;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=240;QR=1959;RO=58;RPL=0;RPP=18.2106;RPPR=128.956;RPR=7;RUN=1;SAF=0;SAP=18.2106;SAR=7;SRF=0;SRP=128.956;SRR=58;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:30:29,1:29:970:1:35:0,-5.53227,-84.104 0/1:15:10,5:10:331:5:175:-11.5782,0,-25.5962 0/0:20:19,1:19:658:1:30:0,-3.02103,-56.5448 dDocent_Contig_13370 8 . G A 305.195 . AB=0.5;ABP=3.0103;AC=1;AF=0.166667;AN=6;AO=11;CIGAR=1X;DP=30;DPB=30;DPRA=5.5;EPP=26.8965;EPPR=44.2683;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=429;QR=736;RO=19;RPL=0;RPP=26.8965;RPPR=44.2683;RPR=11;RUN=1;SAF=11;SAP=26.8965;SAR=0;SRF=19;SRP=44.2683;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:6:6,0:6:234:0:0:0,-1.80618,-21.4311 0/0:2:2,0:2:78:0:0:0,-0.60206,-7.40347 0/1:22:11,11:11:424:11:429:-32.343,0,-31.891 dDocent_Contig_13371 13 . T A 100.419 . AB=0.25;ABP=13.8677;AC=2;AF=0.333333;AN=6;AO=6;CIGAR=1X;DP=37;DPB=37;DPRA=0;EPP=16.0391;EPPR=70.3259;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=0;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=245;QR=1250;RO=31;RPL=0;RPP=16.0391;RPPR=70.3259;RPR=6;RUN=1;SAF=6;SAP=16.0391;SAR=0;SRF=31;SRP=70.3259;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:17:16,1:16:640:1:41:0,-1.02294,-53.8397 0/1:9:8,1:8:325:1:40:-1.28641,0,-26.9104 0/1:11:7,4:7:285:4:164:-11.8386,0,-22.7131 dDocent_Contig_13372 12 . A T 808.367 . AB=0.289474;ABP=46.8969;AC=3;AF=0.5;AN=6;AO=33;CIGAR=1X;DP=114;DPB=114;DPRA=0;EPP=74.6689;EPPR=178.9;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=1329;QR=3215;RO=81;RPL=0;RPP=74.6689;RPPR=178.9;RPR=33;RUN=1;SAF=33;SAP=74.6689;SAR=0;SRF=81;SRP=178.9;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:81:58,23:58:2286:23:925:-59.1683,0,-181.528 0/1:8:5,3:5:200:3:122:-8.96425,0,-15.9717 0/1:25:18,7:18:729:7:282:-18.227,0,-58.4087 dDocent_Contig_13373 36 . T G 581.322 . AB=0.4;ABP=7.78754;AC=3;AF=0.5;AN=6;AO=22;CIGAR=1X;DP=55;DPB=55;DPRA=0;EPP=50.7827;EPPR=74.6689;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=879;QR=1321;RO=33;RPL=0;RPP=50.7827;RPPR=74.6689;RPR=22;RUN=1;SAF=22;SAP=50.7827;SAR=0;SRF=33;SRP=74.6689;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:32:17,15:17:672:15:600:-44.7049,0,-51.1714 0/1:6:4,2:4:164:2:78:-5.59712,0,-13.3437 0/1:17:12,5:12:485:5:201:-13.353,0,-38.8839 dDocent_Contig_13374 8 . G A 202.718 . AB=0.210526;ABP=44.4969;AC=2;AF=0.5;AN=4;AO=12;CIGAR=1X;DP=57;DPB=57;DPRA=0;EPP=29.068;EPPR=100.727;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=2;NUMALT=1;ODDS=0;PAIRED=0.5;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=449;QR=1736;RO=45;RPL=0;RPP=29.068;RPPR=100.727;RPR=12;RUN=1;SAF=12;SAP=29.068;SAR=0;SRF=45;SRP=100.727;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:28:24,4:24:927:4:150:-5.43583,0,-75.3182 ./.:.:.:.:.:.:.:. 0/1:29:21,8:21:809:8:299:-18.5348,0,-64.4051 dDocent_Contig_13375 39 . A T 4068.92 . AB=0.82716;ABP=78.3148;AC=4;AF=0.666667;AN=6;AO=127;CIGAR=1X;DP=146;DPB=146;DPRA=0;EPP=278.787;EPPR=44.2683;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=5020;QR=757;RO=19;RPL=0;RPP=278.787;RPPR=44.2683;RPR=127;RUN=1;SAF=127;SAP=278.787;SAR=0;SRF=19;SRP=44.2683;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 1/1:65:5,60:5:204:60:2373:-194.99,-0.822918,0 0/1:34:3,31:3:120:31:1231:-100.831,0,-0.95267 0/1:47:11,36:11:433:36:1416:-113.534,0,-25.1741 dDocent_Contig_13376 119 . T G 197.576 . AB=0.233333;ABP=40.0701;AC=3;AF=0.5;AN=6;AO=14;CIGAR=1X;DP=60;DPB=60;DPRA=0;EPP=33.4109;EPPR=102.898;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=0.928571;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=470;QR=1523;RO=46;RPL=0;RPP=33.4109;RPPR=102.898;RPR=14;RUN=1;SAF=0;SAP=33.4109;SAR=14;SRF=0;SRP=102.898;SRR=46;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:37:28,9:28:938:9:314:-17.4598,0,-73.5883 0/1:9:6,3:6:196:3:88:-5.50148,0,-15.252 0/1:14:12,2:12:389:2:68:-2.24351,0,-31.1082 dDocent_Contig_13380 24 . T A 97.0883 . AB=0.333333;ABP=8.07707;AC=2;AF=0.333333;AN=6;AO=9;CIGAR=1X;DP=54;DPB=54;DPRA=0;EPP=5.18177;EPPR=92.2337;GTI=0;LEN=1;MEANALT=1;MQM=30.4444;MQMR=59;NS=3;NUMALT=1;ODDS=0;PAIRED=0;PAIREDR=0.955556;PAO=0;PQA=0;PQR=0;PRO=0;QA=355;QR=1700;RO=45;RPL=0;RPP=22.5536;RPPR=100.727;RPR=9;RUN=1;SAF=6;SAP=5.18177;SAR=3;SRF=44;SRP=92.2337;SRR=1;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:33:31,2:31:1155:2:81:0,-4.8402,-99.1255 0/1:3:1,2:1:40:2:78:-4.3291,0,-3.09259 0/1:18:13,5:13:505:5:196:-8.89041,0,-40.0447 dDocent_Contig_13381 69 . G A 593.636 . AB=0.636364;ABP=8.34028;AC=2;AF=0.5;AN=4;AO=21;CIGAR=1X;DP=33;DPB=33;DPRA=0;EPP=48.6112;EPPR=29.068;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=2;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=804;QR=476;RO=12;RPL=21;RPP=48.6112;RPPR=29.068;RPR=0;RUN=1;SAF=21;SAP=48.6112;SAR=0;SRF=12;SRP=29.068;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:25:7,18:7:283:18:710:-56.7027,0,-18.3176 ./.:.:.:.:.:.:.:. 0/1:8:5,3:5:193:3:94:-6.35984,0,-15.3333 dDocent_Contig_13382 30 . C A 100.268 . AB=0.12987;ABP=94.6352;AC=1;AF=0.166667;AN=6;AO=12;CIGAR=1X;DP=162;DPB=162;DPRA=3.35714;EPP=29.068;EPPR=328.731;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=6.93889e-18;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=462;QR=6009;RO=150;RPL=0;RPP=29.068;RPPR=328.731;RPR=12;RUN=1;SAF=12;SAP=29.068;SAR=0;SRF=150;SRP=328.731;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:77:67,10:67:2688:10:382:-11.5497,0,-218.857 0/0:21:21,0:21:845:0:0:0,-6.32163,-76.3611 0/0:64:62,2:62:2476:2:80:0,-11.6741,-215.391 dDocent_Contig_13383 10 . A C 132.242 . AB=0.416667;ABP=3.73412;AC=1;AF=0.25;AN=4;AO=5;CIGAR=1X;DP=19;DPB=19;DPRA=1.71429;EPP=13.8677;EPPR=33.4109;GTI=0;LEN=1;MEANALT=1;MQM=52;MQMR=60;NS=2;NUMALT=1;ODDS=0;PAIRED=0;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=203;QR=559;RO=14;RPL=0;RPP=13.8677;RPPR=33.4109;RPR=5;RUN=1;SAF=5;SAP=13.8677;SAR=0;SRF=14;SRP=33.4109;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:12:7,5:7:278:5:203:-14.9231,0,-21.7785 ./.:.:.:.:.:.:.:. 0/0:7:7,0:7:281:0:0:0,-2.10721,-25.6622 dDocent_Contig_13384 13 . T C 146.831 . AB=0;ABP=0;AC=2;AF=0.333333;AN=6;AO=6;CIGAR=1X;DP=22;DPB=22;DPRA=0.875;EPP=4.45795;EPPR=37.7539;GTI=0;LEN=1;MEANALT=1;MQM=49.5;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=0.666667;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=184;QR=634;RO=16;RPL=0;RPP=16.0391;RPPR=37.7539;RPR=6;RUN=1;SAF=4;SAP=4.45795;SAR=2;SRF=16;SRP=37.7539;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:8:8,0:8:312:0:0:0,-2.40824,-28.4392 1/1:4:0,4:0:0:4:157:-14.5064,-1.20412,0 0/0:10:8,2:8:322:2:27:0,-0.480712,-26.8188 dDocent_Contig_13385 7 . A T 132.428 . AB=0.0675676;ABP=123.204;AC=1;AF=0.166667;AN=6;AO=8;CIGAR=1X3M;DP=130;DPB=130;DPRA=0;EPP=20.3821;EPPR=213.643;GTI=0;LEN=1;MEANALT=3.66667;MQM=52;MQMR=59.2887;NS=3;NUMALT=4;ODDS=0;PAIRED=0;PAIREDR=0.123711;PAO=0;PQA=0;PQR=0;PRO=0;QA=303;QR=3651;RO=97;RPL=0;RPP=20.3821;RPPR=213.643;RPR=8;RUN=1;SAF=8;SAP=20.3821;SAR=0;SRF=97;SRP=213.643;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|0:56:46,2,3,0,4:46:1745:2,3,0,4:78,108,0,156:0,-8.29367,-150.334,-5.04017,-142.126,-146.782,-13.8474,-150.936,-147.685,-156.496,-1.18356,-138.282,-135.031,-143.842,-142.637 0|1:29:18,4,1,3,3:18:675:4,1,3,3:153,39,118,120:-7.11524,0,-54.071,-9.32796,-52.0689,-64.3067,-2.82592,-45.5666,-54.8994,-57.2026,-2.66068,-45.4028,-54.7357,-48.2333,-57.0389 0|0:45:33,2,4,0,6:33:1231:2,4,0,6:77,156,0,238:-9.64985,-13.2621,-113.419,-7.18253,-101.615,-106.733,-19.5838,-114.021,-107.937,-120.344,0,-94.442,-88.3581,-100.765,-98.9587 dDocent_Contig_13386 83 . C A 147.564 . AB=0.4;ABP=5.18177;AC=3;AF=0.5;AN=6;AO=10;CIGAR=1X;DP=25;DPB=25;DPRA=0;EPP=24.725;EPPR=35.5824;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=0.933333;PAO=0;PQA=0;PQR=0;PRO=0;QA=299;QR=511;RO=15;RPL=10;RPP=24.725;RPPR=35.5824;RPR=0;RUN=1;SAF=10;SAP=24.725;SAR=0;SRF=15;SRP=35.5824;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:10:7,3:7:245:3:97:-6.04087,0,-19.3809 0/1:7:3,4:3:96:4:116:-8.62106,0,-6.85077 0/1:8:5,3:5:170:3:86:-5.61728,0,-13.2265 dDocent_Contig_13387 13 . T G 595.703 . AB=0.333333;ABP=19.6583;AC=2;AF=0.333333;AN=6;AO=23;CIGAR=1X;DP=75;DPB=75;DPRA=5.75;EPP=52.9542;EPPR=115.927;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=924;QR=2079;RO=52;RPL=0;RPP=52.9542;RPPR=115.927;RPR=23;RUN=1;SAF=23;SAP=52.9542;SAR=0;SRF=52;SRP=115.927;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:42:27,15:27:1077:15:606:-42.2354,0,-84.5735 0/0:6:6,0:6:237:0:0:0,-1.80618,-21.7003 0/1:27:19,8:19:765:8:318:-20.8578,0,-61.0437 dDocent_Contig_13389 14 . A T 82.5218 . AB=0.6;ABP=3.44459;AC=1;AF=0.166667;AN=6;AO=3;CIGAR=1X;DP=38;DPB=38;DPRA=0.30303;EPP=9.52472;EPPR=79.0118;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=58.8;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=0.942857;PAO=0;PQA=0;PQR=0;PRO=0;QA=121;QR=1395;RO=35;RPL=0;RPP=9.52472;RPPR=79.0118;RPR=3;RUN=1;SAF=3;SAP=9.52472;SAR=0;SRF=35;SRP=79.0118;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:5:2,3:2:81:3:121:-9.77505,0,-6.18058 0/0:17:17,0:17:671:0:0:0,-5.11751,-60.1213 0/0:16:16,0:16:643:0:0:0,-4.81648,-58.204 dDocent_Contig_13390 24 . C A 228.33 . AB=0.148148;ABP=90.1105;AC=3;AF=0.5;AN=6;AO=13;CIGAR=1X;DP=108;DPB=108;DPRA=1.57692;EPP=31.2394;EPPR=204.957;GTI=0;LEN=1;MEANALT=1.5;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=531;QR=3774;RO=93;RPL=0;RPP=31.2394;RPPR=204.957;RPR=13;RUN=1;SAF=13;SAP=31.2394;SAR=0;SRF=93;SRP=204.957;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:81:67,12:67:2733:12:490:-20.2605,0,-221.872 1/1:1:0,1:0:0:1:41:-4.09457,-0.30103,0 0/0:26:26,0:26:1041:0:0:0,-7.82678,-93.9752 dDocent_Contig_13391 11 . A G 110.995 . AB=0.222222;ABP=21.1059;AC=1;AF=0.166667;AN=6;AO=8;CIGAR=1X;DP=121;DPB=121;DPRA=1.05128;EPP=20.3821;EPPR=246.215;GTI=0;LEN=1;MEANALT=1.5;MQM=60;MQMR=59.8482;NS=3;NUMALT=1;ODDS=0;PAIRED=0;PAIREDR=0.821429;PAO=0;PQA=0;PQR=0;PRO=0;QA=307;QR=4386;RO=112;RPL=0;RPP=20.3821;RPPR=246.215;RPR=8;RUN=1;SAF=8;SAP=20.3821;SAR=0;SRF=112;SRP=246.215;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:55:53,2:53:2094:2:76:0,-9.34239,-181.412 0/1:27:20,6:20:771:6:231:-12.9234,0,-61.4638 0/0:39:39,0:39:1521:0:0:0,-11.7402,-137.142 dDocent_Contig_13392 26 . G C 48.5463 . AB=0.173913;ABP=24.253;AC=2;AF=0.333333;AN=6;AO=4;CIGAR=1X;DP=43;DPB=43;DPRA=0.575;EPP=11.6962;EPPR=87.6977;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=0;PAIREDR=0.641026;PAO=0;PQA=0;PQR=0;PRO=0;QA=161;QR=1516;RO=39;RPL=0;RPP=11.6962;RPPR=87.6977;RPR=4;RUN=1;SAF=4;SAP=11.6962;SAR=0;SRF=39;SRP=87.6977;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:20:20,0:20:785:0:0:0,-6.0206,-70.9641 0/1:16:14,2:14:529:2:80:-2.77531,0,-43.1316 0/1:7:5,2:5:202:2:81:-5.57852,0,-16.4547 dDocent_Contig_13394 51 . A C 1029.45 . AB=0.487805;ABP=3.11623;AC=3;AF=0.5;AN=6;AO=40;CIGAR=1X;DP=82;DPB=82;DPRA=0;EPP=89.8692;EPPR=85.7331;GTI=0;LEN=1;MEANALT=1;MQM=45.675;MQMR=59.7619;NS=3;NUMALT=1;ODDS=0;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=1498;QR=1513;RO=42;RPL=0;RPP=89.8692;RPPR=94.2121;RPR=40;RUN=1;SAF=0;SAP=89.8692;SAR=40;SRF=41;SRP=85.7331;SRR=1;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:8:4,4:4:146:4:149:-10.822,0,-11.0895 0/1:42:22,20:22:781:20:743:-53.4095,0,-57.9571 0/1:32:16,16:16:586:16:606:-44.2366,0,-43.444 dDocent_Contig_13395 172 . C A 31.5327 . AB=0.2;ABP=10.8276;AC=1;AF=0.166667;AN=6;AO=2;CIGAR=1X;DP=17;DPB=17;DPRA=2.85714;EPP=7.35324;EPPR=35.5824;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=81;QR=575;RO=15;RPL=2;RPP=7.35324;RPPR=35.5824;RPR=0;RUN=1;SAF=0;SAP=7.35324;SAR=2;SRF=0;SRP=35.5824;SRR=15;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:10:8,2:8:311:2:81:-4.67543,0,-25.3423 0/0:2:2,0:2:76:0:0:0,-0.60206,-7.21467 0/0:5:5,0:5:188:0:0:0,-1.50515,-17.2826 dDocent_Contig_13396 13 . A C 569.421 . AB=0.128947;ABP=457.442;AC=3;AF=0.5;AN=6;AO=49;CIGAR=1X;DP=380;DPB=380;DPRA=0;EPP=109.412;EPPR=721.768;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=59.9094;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=0.978852;PAO=0;PQA=0;PQR=0;PRO=0;QA=1954;QR=13153;RO=331;RPL=0;RPP=109.412;RPPR=721.768;RPR=49;RUN=1;SAF=49;SAP=109.412;SAR=0;SRF=331;SRP=721.768;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:223:203,20:203:8070:20:802:-5.36756,0,-658.667 0/1:57:48,9:48:1905:9:363:-15.8754,0,-154.49 0/1:100:80,20:80:3178:20:789:-41.222,0,-255.994 dDocent_Contig_13398 24 . A T 30.5909 . AB=0.222222;ABP=9.04217;AC=1;AF=0.166667;AN=6;AO=2;CIGAR=2X;DP=21;DPB=21;DPRA=1.5;EPP=7.35324;EPPR=42.0968;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=80;QR=720;RO=18;RPL=0;RPP=7.35324;RPPR=42.0968;RPR=2;RUN=1;SAF=2;SAP=7.35324;SAR=0;SRF=18;SRP=42.0968;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|0:5:4,0:4:162:0:0:0,-1.20412,-14.5662 0|1:9:7,2:7:283:2:80:-4.88252,0,-23.1343 0|0:7:7,0:7:275:0:0:0,-2.10721,-25.1175 dDocent_Contig_13400 135 . A G 32.1247 . AB=0.1875;ABP=16.582;AC=2;AF=0.333333;AN=6;AO=3;CIGAR=1X;DP=45;DPB=45;DPRA=0.275862;EPP=9.52472;EPPR=94.2121;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=108;QR=1481;RO=42;RPL=0;RPP=9.52472;RPPR=94.2121;RPR=3;RUN=1;SAF=0;SAP=9.52472;SAR=3;SRF=0;SRP=94.2121;SRR=42;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:29:29,0:29:1028:0:0:0,-8.72987,-92.8322 0/1:6:4,2:4:132:2:72:-5.03054,0,-10.3995 0/1:10:9,1:9:321:1:36:-0.587975,0,-26.2229 dDocent_Contig_13401 8 . G T 97.7867 . AB=0.227273;ABP=17.2236;AC=1;AF=0.166667;AN=6;AO=5;CIGAR=1X;DP=53;DPB=53;DPRA=1.41935;EPP=13.8677;EPPR=107.241;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=1.73472e-18;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=195;QR=1817;RO=48;RPL=0;RPP=13.8677;RPPR=107.241;RPR=5;RUN=1;SAF=5;SAP=13.8677;SAR=0;SRF=48;SRP=107.241;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:22:17,5:17:643:5:195:-11.3015,0,-51.5834 0/0:7:7,0:7:267:0:0:0,-2.10721,-24.3929 0/0:24:24,0:24:907:0:0:0,-7.22472,-81.9477 dDocent_Contig_13402 19 . A G 427.112 . AB=0.221374;ABP=91.3445;AC=0;AF=0;AN=6;AO=29;CIGAR=2X2M;DP=131;DPB=131;DPRA=0;EPP=65.983;EPPR=163.699;GTI=0;LEN=1;MEANALT=3;MQM=24;MQMR=60;NS=3;NUMALT=4;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=695;QR=2946;RO=74;RPL=0;RPP=65.983;RPPR=163.699;RPR=29;RUN=1;SAF=29;SAP=65.983;SAR=0;SRF=74;SRP=163.699;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|0:94:55,0,23,16,0:55:2190:0,23,16,0:0,551,621,0:-34.2227,-50.7793,-231.177,-14.3876,-194.727,-187.803,0,-180.462,-144.022,-175.646,-50.7793,-231.177,-194.727,-180.462,-231.177 0|0:22:13,3,2,0,4:13:516:3,2,0,4:118,48,0,153:-7.04441,-1.2185,-42.8633,-7.81379,-40.6069,-49.7131,-10.9578,-43.7664,-50.3152,-53.477,0,-32.8237,-39.3769,-42.5339,-41.3298 0|0:15:6,1,4,0,3:6:240:1,4,0,3:40,96,0,119:-6.95787,-5.45665,-24.973,-2.48161,-18.9693,-21.0614,-8.76405,-25.2741,-22.2655,-28.5734,0,-16.5323,-13.541,-19.8332,-18.9301 dDocent_Contig_13404 12 . C T 323.849 . AB=0.283019;ABP=24.6841;AC=3;AF=0.5;AN=6;AO=15;CIGAR=1X;DP=53;DPB=53;DPRA=0;EPP=35.5824;EPPR=85.5263;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=586;QR=1496;RO=38;RPL=0;RPP=35.5824;RPPR=85.5263;RPR=15;RUN=1;SAF=15;SAP=35.5824;SAR=0;SRF=38;SRP=85.5263;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:24:17,7:17:664:7:275:-17.894,0,-52.8706 0/1:7:2,5:2:79:5:192:-15.5405,0,-5.39042 0/1:22:19,3:19:753:3:119:-4.47273,0,-61.4724 dDocent_Contig_13405 14 . C G 4986.8 . AB=0.045977;ABP=158.782;AC=5;AF=0.833334;AN=6;AO=4;CIGAR=1M6I8M1X;DP=220;DPB=326.4;DPRA=0.327068;EPP=11.6962;EPPR=31.2394;GTI=0;LEN=1;MEANALT=5;MQM=60;MQMR=60;NS=3;NUMALT=3;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=140;QR=497;RO=13;RPL=0;RPP=11.6962;RPPR=31.2394;RPR=4;RUN=1;SAF=4;SAP=11.6962;SAR=0;SRF=13;SRP=31.2394;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 1|1:133:5,3,105,0:5:189:3,105,0:104,3885,0:-332.403,-325.457,-340.047,-16.1158,-23.1598,0,-333.909,-340.95,-31.6082,-349.401 1|1:27:0,2,17,1:0:0:2,17,1:78,609,39:-56.0523,-49.6388,-49.0368,-6.413,0,-1.29549,-52.8456,-46.432,-3.20657,-52.5446 0|1:60:8,0,39,3:8:308:0,39,3:0,1414,101:-113.015,-115.423,-140.715,0,-25.2916,-13.5515,-107.242,-132.534,-17.1164,-131.631 dDocent_Contig_13406 17 . C T 209.926 . AB=0.444444;ABP=3.49285;AC=2;AF=0.333333;AN=6;AO=9;CIGAR=2X;DP=35;DPB=35;DPRA=0;EPP=22.5536;EPPR=57.2971;GTI=0;LEN=1;MEANALT=1.33333;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=363;QR=967;RO=25;RPL=0;RPP=22.5536;RPPR=57.2971;RPR=9;RUN=1;SAF=9;SAP=22.5536;SAR=0;SRF=25;SRP=57.2971;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|1:10:6,4:6:233:4:162:-11.9567,0,-18.328 0|1:8:4,4:4:149:4:162:-12.5587,0,-11.3639 0|0:17:15,1:15:585:1:39:0,-1.31947,-49.0842 dDocent_Contig_13407 66 . C A 948.67 . AB=0.397727;ABP=11.0053;AC=3;AF=0.5;AN=6;AO=35;CIGAR=1X;DP=88;DPB=88;DPRA=0;EPP=79.0118;EPPR=118.098;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=1398;QR=2127;RO=53;RPL=35;RPP=79.0118;RPPR=118.098;RPR=0;RUN=1;SAF=35;SAP=79.0118;SAR=0;SRF=53;SRP=118.098;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:46:23,23:23:924:23:919:-69.171,0,-69.6162 0/1:26:18,8:18:716:8:318:-21.16,0,-56.9404 0/1:16:12,4:12:487:4:161:-10.0588,0,-39.365 dDocent_Contig_13409 28 . A T 386.876 . AB=0.222222;ABP=27.1378;AC=4;AF=0.666667;AN=6;AO=14;CIGAR=1X;DP=42;DPB=42;DPRA=0;EPP=33.4109;EPPR=63.8115;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=567;QR=1124;RO=28;RPL=0;RPP=33.4109;RPPR=63.8115;RPR=14;RUN=1;SAF=14;SAP=33.4109;SAR=0;SRF=28;SRP=63.8115;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:22:20,2:20:806:2:82:-1.15702,0,-66.2348 1/1:6:0,6:0:0:6:242:-22.1569,-1.80618,0 0/1:14:8,6:8:318:6:243:-18.0332,0,-24.7696 dDocent_Contig_13410 44 . T C 490.117 . AB=0.193548;ABP=53.5846;AC=2;AF=0.333333;AN=6;AO=12;CIGAR=2X;DP=62;DPB=62;DPRA=0;EPP=29.068;EPPR=83.3548;GTI=0;LEN=1;MEANALT=1.66667;MQM=60;MQMR=60;NS=3;NUMALT=2;ODDS=0;PAIRED=0;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=479;QR=1459;RO=37;RPL=0;RPP=29.068;RPPR=83.3548;RPR=12;RUN=1;SAF=12;SAP=29.068;SAR=0;SRF=37;SRP=83.3548;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|0:38:24,3,11:24:951:3,11:121,435:-28.5651,-25.8139,-103.181,0,-68.2883,-74.9519 0|1:14:10,4,0:10:387:4,0:161,0:-10.6609,0,-30.9678,-13.6712,-32.1719,-45.4454 0|1:10:3,5,2:3:121:5,2:197,77:-15.3086,0,-8.48003,-9.89274,-3.67097,-19.2684 dDocent_Contig_13411 17 . G A 44.3118 . AB=0.166667;ABP=20.3821;AC=1;AF=0.166667;AN=6;AO=3;CIGAR=1X;DP=33;DPB=33;DPRA=2.4;EPP=9.52472;EPPR=68.1545;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=122;QR=1205;RO=30;RPL=0;RPP=9.52472;RPPR=68.1545;RPR=3;RUN=1;SAF=3;SAP=9.52472;SAR=0;SRF=30;SRP=68.1545;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:18:15,3:15:604:3:122:-5.95395,0,-49.2789 0/0:4:4,0:4:153:0:0:0,-1.20412,-14.1405 0/0:11:11,0:11:448:0:0:0,-3.31133,-40.676 dDocent_Contig_13413 114 . G A 489.08 . AB=0.6;ABP=3.44459;AC=1;AF=0.166667;AN=6;AO=3;CIGAR=1X1M2X;DP=52;DPB=52;DPRA=0;EPP=9.52472;EPPR=59.4686;GTI=0;LEN=1;MEANALT=2;MQM=44;MQMR=58.4615;NS=3;NUMALT=2;ODDS=0;PAIRED=0;PAIREDR=0.807692;PAO=0;PQA=0;PQR=0;PRO=0;QA=94;QR=858;RO=26;RPL=0;RPP=9.52472;RPPR=59.4686;RPR=3;RUN=1;SAF=0;SAP=9.52472;SAR=3;SRF=0;SRP=59.4686;SRR=26;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|0:25:12,0,13:12:412:0,13:0,403:-28.6439,-32.2562,-65.717,0,-33.7863,-29.8729 1|0:5:1,3,1:1:31:3,1:94,33:-7.32857,-0.149073,-1.72701,-5.00346,0,-7.19067 0|0:22:13,0,8:13:415:0,8:0,277:-18.0702,-21.9836,-55.3999,0,-33.6398,-31.2316 dDocent_Contig_13415 16 . T G 31.4178 . AB=0;ABP=0;AC=0;AF=0;AN=6;AO=2;CIGAR=2M1X3M;DP=137;DPB=142.333;DPRA=1.2;EPP=7.35324;EPPR=276.616;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=2;ODDS=0;PAIRED=1;PAIREDR=0.992063;PAO=0;PQA=0;PQR=0;PRO=0;QA=82;QR=4988;RO=126;RPL=0;RPP=7.35324;RPPR=276.616;RPR=2;RUN=1;SAF=2;SAP=7.35324;SAR=0;SRF=126;SRP=276.616;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|0:82:74,8,0:74:2917:8,0:322,0:-4.66426,0,-237.967,-26.9405,-240.375,-266.914 0|0:30:28,0,2:28:1115:0,2:0,82:0,-8.42884,-100.231,-1.25122,-93.4618,-92.8597 0|0:25:24,0,0:24:956:0,0:0,0:0,-7.22472,-86.0777,-7.22472,-86.0777,-86.0777 dDocent_Contig_13417 54 . T A 395.77 . AB=0.722222;ABP=10.7311;AC=1;AF=0.25;AN=4;AO=13;CIGAR=1X;DP=24;DPB=24;DPRA=3;EPP=31.2394;EPPR=26.8965;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=2;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=515;QR=448;RO=11;RPL=13;RPP=31.2394;RPPR=26.8965;RPR=0;RUN=1;SAF=13;SAP=31.2394;SAR=0;SRF=11;SRP=26.8965;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:18:5,13:5:203:13:515:-41.276,0,-13.2345 0/0:6:6,0:6:245:0:0:0,-1.80618,-22.4295 ./.:.:.:.:.:.:.:. dDocent_Contig_13418 30 . T A 144.979 . AB=0.375;ABP=5.18177;AC=2;AF=0.333333;AN=6;AO=6;CIGAR=1X;DP=27;DPB=27;DPRA=0.727273;EPP=16.0391;EPPR=48.6112;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=245;QR=838;RO=21;RPL=0;RPP=16.0391;RPPR=48.6112;RPR=6;RUN=1;SAF=6;SAP=16.0391;SAR=0;SRF=21;SRP=48.6112;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:9:6,3:6:241:3:123:-8.75552,0,-19.3572 0/0:11:11,0:11:436:0:0:0,-3.31133,-39.594 0/1:7:4,3:4:161:3:122:-9.26528,0,-12.7677 dDocent_Contig_13419 164 . A G 51.0745 . AB=0.142857;ABP=34.0313;AC=1;AF=0.166667;AN=6;AO=4;CIGAR=1X;DP=40;DPB=40;DPRA=4.66667;EPP=11.6962;EPPR=81.1833;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=1.73472e-18;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=163;QR=1450;RO=36;RPL=4;RPP=11.6962;RPPR=81.1833;RPR=0;RUN=1;SAF=0;SAP=11.6962;SAR=4;SRF=0;SRP=81.1833;SRR=36;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:28:24,4:24:967:4:163:-6.62959,0,-78.892 0/0:1:1,0:1:41:0:0:0,-0.30103,-4.09457 0/0:11:11,0:11:442:0:0:0,-3.31133,-40.1349 dDocent_Contig_13420 24 . T A 50.6422 . AB=0.666667;ABP=3.73412;AC=1;AF=0.166667;AN=6;AO=2;CIGAR=1X;DP=36;DPB=36;DPRA=0.181818;EPP=7.35324;EPPR=76.8404;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=0.882353;PAO=0;PQA=0;PQR=0;PRO=0;QA=82;QR=1343;RO=34;RPL=0;RPP=7.35324;RPPR=76.8404;RPR=2;RUN=1;SAF=2;SAP=7.35324;SAR=0;SRF=34;SRP=76.8404;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:19:19,0:19:750:0:0:0,-5.71957,-67.8175 0/1:3:1,2:1:40:2:82:-6.87659,0,-3.09259 0/0:14:14,0:14:553:0:0:0,-4.21442,-50.111 dDocent_Contig_13423 146 . T G 39.68 . AB=0.148148;ABP=32.0437;AC=1;AF=0.166667;AN=6;AO=4;CIGAR=1X;DP=41;DPB=41;DPRA=3.85714;EPP=11.6962;EPPR=81.1833;GTI=0;LEN=1;MEANALT=2;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=146;QR=1229;RO=36;RPL=0;RPP=11.6962;RPPR=81.1833;RPR=4;RUN=1;SAF=0;SAP=11.6962;SAR=4;SRF=0;SRP=81.1833;SRR=36;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:27:22,4:22:761:4:146:-5.49074,0,-60.8445 0/0:4:4,0:4:130:0:0:0,-1.20412,-12.0213 0/0:10:10,0:10:338:0:0:0,-3.0103,-30.7474 dDocent_Contig_13424 107 . N C 776.057 . AB=0;ABP=0;AC=6;AF=1;AN=6;AO=28;CIGAR=1X;DP=28;DPB=28;DPRA=0;EPP=63.8115;EPPR=0;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=0;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=846;QR=0;RO=0;RPL=0;RPP=63.8115;RPPR=0;RPR=28;RUN=1;SAF=0;SAP=63.8115;SAR=28;SRF=0;SRP=0;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 1/1:17:0,17:0:0:17:536:-48.5396,-5.11751,0 1/1:10:0,10:0:0:10:281:-25.5637,-3.0103,0 1/1:1:0,1:0:0:1:29:-2.89966,-0.30103,0 dDocent_Contig_13425 8 . G A 1283.54 . AB=0.0735294;ABP=110.434;AC=0;AF=0;AN=6;AO=5;CIGAR=1X3M1X3M;DP=192;DPB=192;DPRA=0;EPP=13.8677;EPPR=146.327;GTI=0;LEN=1;MEANALT=11;MQM=47.6;MQMR=59.6364;NS=3;NUMALT=4;ODDS=5.55112e-17;PAIRED=0.6;PAIREDR=0.984848;PAO=0;PQA=0;PQR=0;PRO=0;QA=170;QR=2494;RO=66;RPL=0;RPP=13.8677;RPPR=146.327;RPR=5;RUN=1;SAF=5;SAP=13.8677;SAR=0;SRF=66;SRP=146.327;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|0:43:20,0,8,3,8:20:754:0,8,3,8:0,320,119,323:-20.5945,-26.6151,-88.3944,-0.254681,-62.0318,-59.6236,-16.8195,-78.5978,-52.2349,-77.6947,0,-61.7782,-35.4139,-51.9812,-59.37 0|0:68:20,5,14,1,16:20:736:5,14,1,16:170,545,36,600:-42.0234,-34.8037,-93.469,-3.25441,-50.1869,-59.2141,-45.1069,-92.037,-60.4912,-104.978,0,-46.9296,-15.3813,-57.2333,-55.3539 0|0:81:26,0,14,2,27:26:1004:0,14,2,27:0,558,78,989:-71.1851,-79.0119,-161.105,-33.0519,-115.148,-110.934,-72.5996,-154.692,-108.736,-154.09,0,-82.0875,-36.1316,-75.6756,-73.9597 dDocent_Contig_13427 14 . T C 138.925 . AB=0.146667;ABP=84.3392;AC=2;AF=0.333333;AN=6;AO=11;CIGAR=1X;DP=112;DPB=112;DPRA=1.01351;EPP=26.8965;EPPR=222.329;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=3.46945e-18;PAIRED=1;PAIREDR=0.990099;PAO=0;PQA=0;PQR=0;PRO=0;QA=436;QR=4012;RO=101;RPL=0;RPP=26.8965;RPPR=222.329;RPR=11;RUN=1;SAF=11;SAP=26.8965;SAR=0;SRF=101;SRP=222.329;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:52:45,7:45:1780:7:273:-9.28068,0,-144.753 0/1:23:19,4:19:762:4:163:-8.13474,0,-61.9784 0/0:37:37,0:37:1470:0:0:0,-11.1381,-132.545 dDocent_Contig_13428 26 . C T 368.445 . AB=0.25;ABP=20.3821;AC=2;AF=0.333334;AN=6;AO=8;CIGAR=1X2M;DP=56;DPB=56;DPRA=0;EPP=20.3821;EPPR=74.6689;GTI=0;LEN=1;MEANALT=2.5;MQM=60;MQMR=60;NS=3;NUMALT=3;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=315;QR=1322;RO=33;RPL=0;RPP=20.3821;RPPR=74.6689;RPR=8;RUN=1;SAF=8;SAP=20.3821;SAR=0;SRF=33;SRP=74.6689;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|1:24:18,6,0,0:18:720:6,0,0:237,0,0:-14.4773,0,-57.9023,-19.8958,-59.7085,-79.2085,-19.8958,-59.7085,-79.2085,-79.2085 0|1:14:7,0,5,2:7:284:0,5,2:0,194,81:-13.8203,-15.9275,-39.3555,0,-23.4221,-21.917,-9.24355,-32.6754,-16.7431,-32.0733 0|0:18:8,2,3,5:8:318:2,3,5:76,121,200:-14.0697,-10.2504,-35.8275,-6.50125,-26.4546,-31.7809,0,-19.9542,-16.207,-24.678 dDocent_Contig_13430 7 . A T 81.1816 . AB=0.166667;ABP=37.7539;AC=1;AF=0.166667;AN=6;AO=10;CIGAR=1X;DP=365;DPB=365;DPRA=0;EPP=24.725;EPPR=773.883;GTI=0;LEN=1;MEANALT=1;MQM=46.7;MQMR=58.8394;NS=3;NUMALT=1;ODDS=3.46945e-18;PAIRED=0.7;PAIREDR=0.952113;PAO=0;PQA=0;PQR=0;PRO=0;QA=383;QR=13456;RO=355;RPL=0;RPP=24.725;RPPR=773.883;RPR=10;RUN=1;SAF=10;SAP=24.725;SAR=0;SRF=355;SRP=773.883;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:241:238,3:238:9041:3:117:0,-66.6872,-807.469 0/1:36:30,6:30:1128:6:227:-9.94207,0,-84.1563 0/0:88:87,1:87:3287:1:39:0,-22.5941,-288.226 dDocent_Contig_13431 9 . G T 89.9413 . AB=0.208333;ABP=20.744;AC=1;AF=0.166667;AN=6;AO=5;CIGAR=1X;DP=35;DPB=35;DPRA=4.36364;EPP=13.8677;EPPR=68.1545;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=193;QR=1130;RO=30;RPL=0;RPP=13.8677;RPPR=68.1545;RPR=5;RUN=1;SAF=5;SAP=13.8677;SAR=0;SRF=30;SRP=68.1545;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:24:19,5:19:714:5:193:-10.5166,0,-57.3604 0/0:9:9,0:9:339:0:0:0,-2.70927,-30.8632 0/0:2:2,0:2:77:0:0:0,-0.60206,-7.30914 dDocent_Contig_13432 7 . A G 24794.2 . AB=0.779301;ABP=991.596;AC=3;AF=0.5;AN=6;AO=1137;CIGAR=1X;DP=1459;DPB=1459;DPRA=0;EPP=2351.87;EPPR=521.014;GTI=0;LEN=1;MEANALT=2.66667;MQM=40.2911;MQMR=48.0191;NS=3;NUMALT=1;ODDS=1.11022e-16;PAIRED=0.182938;PAIREDR=0.251908;PAO=0;PQA=0;PQR=0;PRO=0;QA=37431;QR=9948;RO=262;RPL=0;RPP=2471.97;RPPR=571.936;RPR=1137;RUN=1;SAF=1123;SAP=2351.87;SAR=14;SRF=256;SRP=521.014;SRR=6;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:436:88,336:88:3361:336:10888:-728.683,0,-159.078 0/1:581:81,480:81:3057:480:16307:-1101.14,0,-60.3273 0/1:442:93,321:93:3530:321:10236:-655.122,0,-171.04 dDocent_Contig_13434 7 . A G 630.538 . AB=0.434783;ABP=5.55942;AC=3;AF=0.5;AN=6;AO=30;CIGAR=1X1M;DP=69;DPB=69;DPRA=0;EPP=68.1545;EPPR=76.8404;GTI=0;LEN=1;MEANALT=1.66667;MQM=58.6333;MQMR=60;NS=3;NUMALT=2;ODDS=0;PAIRED=0.0333333;PAIREDR=0.647059;PAO=0;PQA=0;PQR=0;PRO=0;QA=974;QR=1298;RO=34;RPL=0;RPP=68.1545;RPPR=76.8404;RPR=30;RUN=1;SAF=30;SAP=68.1545;SAR=0;SRF=34;SRP=76.8404;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|1:17:7,0,10:7:271:0,10:0,294:-21.6243,-23.7315,-46.0322,0,-22.6492,-19.6389 0|1:33:18,3,12:18:685:3,12:111,415:-28.2112,-24.5438,-79.8462,0,-47.1139,-52.581 0|1:19:9,2,8:9:342:2,8:61,265:-18.7412,-16.571,-44.0426,0,-23.2381,-25.701 dDocent_Contig_13435 8 . G A 94.2505 . AB=0.0666667;ABP=51.9408;AC=0;AF=0;AN=6;AO=2;CIGAR=3X;DP=50;DPB=50;DPRA=3;EPP=7.35324;EPPR=89.8692;GTI=0;LEN=1;MEANALT=2;MQM=25;MQMR=60;NS=3;NUMALT=2;ODDS=0;PAIRED=0;PAIREDR=0.65;PAO=0;PQA=0;PQR=0;PRO=0;QA=75;QR=1511;RO=40;RPL=0;RPP=7.35324;RPPR=89.8692;RPR=2;RUN=1;SAF=2;SAP=7.35324;SAR=0;SRF=40;SRP=89.8692;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|0:8:8,0,0:8:309:0,0:0,0:0,-2.40824,-28.1731,-2.40824,-28.1731,-28.1731 0|0:30:20,2,8:20:745:2,8:75,219:-11.2489,-13.4196,-73.8725,0,-57.2537,-58.6891 0|0:12:12,0,0:12:457:0,0:0,0:0,-3.61236,-41.4788,-3.61236,-41.4788,-41.4788 dDocent_Contig_13436 17 . T A 1832.12 . AB=0.590476;ABP=10.476;AC=3;AF=0.5;AN=6;AO=62;CIGAR=1X;DP=105;DPB=105;DPRA=0;EPP=137.642;EPPR=96.3836;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=2438;QR=1726;RO=43;RPL=0;RPP=137.642;RPPR=96.3836;RPR=62;RUN=1;SAF=62;SAP=137.642;SAR=0;SRF=43;SRP=96.3836;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:58:17,41:17:674:41:1642:-130.546,0,-43.5238 0/1:12:7,5:7:284:5:197:-14.4924,0,-22.3214 0/1:35:19,16:19:768:16:599:-43.6963,0,-58.9027 dDocent_Contig_13437 26 . A G 135.005 . AB=0.196429;ABP=47.8357;AC=3;AF=0.5;AN=6;AO=11;CIGAR=1X;DP=56;DPB=56;DPRA=0;EPP=26.8965;EPPR=100.727;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=387;QR=1592;RO=45;RPL=0;RPP=26.8965;RPPR=100.727;RPR=11;RUN=1;SAF=11;SAP=26.8965;SAR=0;SRF=45;SRP=100.727;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:18:14,4:14:501:4:135:-7.06374,0,-40.0038 0/1:28:23,5:23:824:5:176:-7.75422,0,-66.0424 0/1:10:8,2:8:267:2:76:-4.20451,0,-21.3403 dDocent_Contig_13438 107 . N T 98.8971 . AB=0;ABP=0;AC=2;AF=1;AN=2;AO=3;CIGAR=1X;DP=3;DPB=3;DPRA=0;EPP=9.52472;EPPR=0;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=0;NS=1;NUMALT=1;ODDS=6.68461;PAIRED=1;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=106;QR=0;RO=0;RPL=0;RPP=9.52472;RPPR=0;RPR=3;RUN=1;SAF=0;SAP=9.52472;SAR=3;SRF=0;SRP=0;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL ./.:.:.:.:.:.:.:. ./.:.:.:.:.:.:.:. 1/1:3:0,3:0:0:3:106:-9.88916,-0.90309,0 dDocent_Contig_13439 113 . G A 311.388 . AB=0.378378;ABP=7.76406;AC=1;AF=0.166667;AN=6;AO=14;CIGAR=1X;DP=44;DPB=44;DPRA=10.5714;EPP=33.4109;EPPR=68.1545;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=1.73472e-18;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=483;QR=1033;RO=30;RPL=0;RPP=33.4109;RPPR=68.1545;RPR=14;RUN=1;SAF=0;SAP=33.4109;SAR=14;SRF=0;SRP=68.1545;SRR=30;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:37:23,14:23:789:14:483:-32.6608,0,-60.1891 0/0:1:1,0:1:35:0:0:0,-0.30103,-3.49863 0/0:6:6,0:6:209:0:0:0,-1.80618,-19.1511 dDocent_Contig_13440 117 . G A 639.096 . AB=0.491228;ABP=3.0484;AC=3;AF=0.5;AN=6;AO=28;CIGAR=1X;DP=57;DPB=57;DPRA=0;EPP=63.8115;EPPR=65.983;GTI=0;LEN=1;MEANALT=1;MQM=59.7143;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=0;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=951;QR=1000;RO=29;RPL=0;RPP=63.8115;RPPR=65.983;RPR=28;RUN=1;SAF=0;SAP=63.8115;SAR=28;SRF=0;SRP=65.983;SRR=29;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:37:19,18:19:651:18:601:-43.2657,0,-47.7689 0/1:9:6,3:6:205:3:105:-7.08689,0,-16.0754 0/1:11:4,7:4:144:7:245:-19.0799,0,-10.0023 dDocent_Contig_13441 43 . G A 141.861 . AB=0.333333;ABP=7.35324;AC=1;AF=0.166667;AN=6;AO=6;CIGAR=1X;DP=79;DPB=79;DPRA=0.590164;EPP=16.0391;EPPR=161.528;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=234;QR=2902;RO=73;RPL=0;RPP=16.0391;RPPR=161.528;RPR=6;RUN=1;SAF=6;SAP=16.0391;SAR=0;SRF=73;SRP=161.528;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:57:57,0:57:2260:0:0:0,-17.1587,-203.575 0/0:4:4,0:4:161:0:0:0,-1.20412,-14.8755 0/1:18:12,6:12:481:6:234:-16.0099,0,-38.2214 dDocent_Contig_13443 33 . A G 1457.9 . AB=0.125;ABP=22.5536;AC=0;AF=0;AN=6;AO=2;CIGAR=2X3M1X2M1X;DP=92;DPB=92.4444;DPRA=0;EPP=7.35324;EPPR=46.4397;GTI=0;LEN=1;MEANALT=3;MQM=9;MQMR=60;NS=3;NUMALT=4;ODDS=0;PAIRED=0;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=80;QR=758;RO=20;RPL=0;RPP=7.35324;RPPR=46.4397;RPR=2;RUN=1;SAF=2;SAP=7.35324;SAR=0;SRF=20;SRP=46.4397;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|0:43:9,2,0,16,16:9:350:2,0,16,16:67,0,640,632:-73.2604,-70.8207,-98.9799,-75.9697,-99.5819,-104.732,-23.2477,-46.8634,-52.0116,-47.1951,-23.9672,-47.5817,-52.7296,0,-47.9131 0|0:16:1,0,2,3,10:1:39:0,2,3,10:0,80,121,396:-39.2263,-39.5274,-42.7353,-38.5509,-41.7563,-41.1542,-29.5415,-32.7508,-31.7804,-31.8477,-6.85621,-10.0807,-9.16654,0,-7.07044 0|0:33:10,2,0,7,13:10:369:2,0,7,13:82,0,281,509:-38.8264,-35.0673,-64.6293,-41.8367,-65.2313,-72.0009,-18.6811,-42.0737,-48.8439,-46.7367,0,-23.3848,-30.1556,-6.99388,-26.2422 dDocent_Contig_13444 15 . G C 617.553 . AB=0.478261;ABP=3.19912;AC=3;AF=0.5;AN=6;AO=22;CIGAR=1X;DP=46;DPB=46;DPRA=0;EPP=50.7827;EPPR=55.1256;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=883;QR=953;RO=24;RPL=0;RPP=50.7827;RPPR=55.1256;RPR=22;RUN=1;SAF=22;SAP=50.7827;SAR=0;SRF=24;SRP=55.1256;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:34:17,17:17:680:17:687:-51.9247,0,-51.2954 0/1:5:1,4:1:41:4:160:-13.2783,0,-2.58942 0/1:7:6,1:6:232:1:36:-1.49107,0,-19.1391 dDocent_Contig_13445 80 . C T 402.959 . AB=0.333333;ABP=19.6583;AC=2;AF=0.333333;AN=6;AO=23;CIGAR=1X;DP=76;DPB=76;DPRA=4.92857;EPP=52.9542;EPPR=115.927;GTI=0;LEN=1;MEANALT=1.5;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=711;QR=1715;RO=52;RPL=23;RPP=52.9542;RPPR=115.927;RPR=0;RUN=1;SAF=23;SAP=52.9542;SAR=0;SRF=52;SRP=115.927;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:59:37,21:37:1204:21:642:-40.2723,0,-90.8538 0/0:7:7,0:7:237:0:0:0,-2.10721,-21.6617 0/1:10:8,2:8:274:2:69:-3.54236,0,-21.9837 dDocent_Contig_13446 34 . C T 201.987 . AB=0.232558;ABP=29.7245;AC=2;AF=0.333333;AN=6;AO=10;CIGAR=1X;DP=44;DPB=44;DPRA=21.5;EPP=24.725;EPPR=76.8404;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=399;QR=1378;RO=34;RPL=0;RPP=24.725;RPPR=76.8404;RPR=10;RUN=1;SAF=10;SAP=24.725;SAR=0;SRF=34;SRP=76.8404;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:23:19,4:19:771:4:158:-7.67497,0,-62.7865 0/0:1:1,0:1:41:0:0:0,-0.30103,-4.09457 0/1:20:14,6:14:566:6:241:-16.0459,0,-45.2604 dDocent_Contig_13447 36 . C T 59.6365 . AB=0.166667;ABP=26.1727;AC=2;AF=0.333333;AN=6;AO=4;CIGAR=1X3M1X;DP=31;DPB=31;DPRA=1.71429;EPP=11.6962;EPPR=61.6401;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=0.888889;PAO=0;PQA=0;PQR=0;PRO=0;QA=159;QR=1054;RO=27;RPL=0;RPP=11.6962;RPPR=61.6401;RPR=4;RUN=1;SAF=4;SAP=11.6962;SAR=0;SRF=27;SRP=61.6401;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|1:12:9,3:9:351:3:119:-7.48303,0,-28.3375 0|0:7:7,0:7:273:0:0:0,-2.10721,-24.9366 0|1:12:11,1:11:430:1:40:-0.383319,0,-35.4382 dDocent_Contig_13449 136 . G C 160.579 . AB=0.259259;ABP=16.6021;AC=2;AF=0.333333;AN=6;AO=7;CIGAR=1X;DP=30;DPB=30;DPRA=4.5;EPP=18.2106;EPPR=52.9542;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=278;QR=901;RO=23;RPL=0;RPP=18.2106;RPPR=52.9542;RPR=7;RUN=1;SAF=0;SAP=18.2106;SAR=7;SRF=0;SRP=52.9542;SRR=23;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:14:8,6:8:314:6:238:-17.5789,0,-24.4064 0/0:3:3,0:3:116:0:0:0,-0.90309,-10.8163 0/1:13:12,1:12:471:1:40:-0.0822893,0,-38.8257 dDocent_Contig_13450 17 . G T 87.1849 . AB=0.2;ABP=14.7363;AC=3;AF=0.5;AN=6;AO=4;CIGAR=1X1M2I3M2I2M;DP=24;DPB=26.2857;DPRA=1;EPP=11.6962;EPPR=46.4397;GTI=0;LEN=1;MEANALT=1;MQM=55.75;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=0.75;PAIREDR=0.95;PAO=0;PQA=0;PQR=0;PRO=0;QA=157;QR=803;RO=20;RPL=0;RPP=11.6962;RPPR=46.4397;RPR=4;RUN=1;SAF=4;SAP=11.6962;SAR=0;SRF=20;SRP=46.4397;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|1:15:12,3:12:482:3:118:-6.48613,0,-39.2167 0|0:8:8,0:8:321:0:0:0,-2.40824,-29.2585 1|1:1:0,1:0:0:1:39:-3.75448,-0.30103,0 dDocent_Contig_13451 106 . N C 275.051 . AB=0;ABP=0;AC=4;AF=1;AN=4;AO=9;CIGAR=2X;DP=9;DPB=9;DPRA=0;EPP=22.5536;EPPR=0;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=0;NS=2;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=295;QR=0;RO=0;RPL=0;RPP=22.5536;RPPR=0;RPR=9;RUN=1;SAF=0;SAP=22.5536;SAR=9;SRF=0;SRP=0;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 1|1:6:0,6:0:0:6:193:-17.6869,-1.80618,0 .:.:.:.:.:.:.:. 1|1:3:0,3:0:0:3:102:-9.51695,-0.90309,0 dDocent_Contig_13452 79 . A T 96.8462 . AB=0.666667;ABP=4.45795;AC=1;AF=0.166667;AN=6;AO=7;CIGAR=1X;DP=51;DPB=51;DPRA=0;EPP=18.2106;EPPR=90.0666;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=0.931818;PAO=0;PQA=0;PQR=0;PRO=0;QA=239;QR=1530;RO=44;RPL=7;RPP=18.2106;RPPR=98.5551;RPR=0;RUN=1;SAF=7;SAP=18.2106;SAR=0;SRF=43;SRP=90.0666;SRR=1;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:19:17,2:17:587:2:59:0,-0.115975,-47.552 0/1:6:2,4:2:75:4:144:-11.5074,0,-5.31341 0/0:26:25,1:25:868:1:36:0,-4.2285,-74.8391 dDocent_Contig_13453 209 . N G 827.277 . AB=0;ABP=0;AC=6;AF=1;AN=6;AO=24;CIGAR=1X;DP=24;DPB=24;DPRA=0;EPP=55.1256;EPPR=0;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=0;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=902;QR=0;RO=0;RPL=24;RPP=55.1256;RPPR=0;RPR=0;RUN=1;SAF=0;SAP=55.1256;SAR=24;SRF=0;SRP=0;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 1/1:13:0,13:0:0:13:472:-42.8084,-3.91339,0 1/1:8:0,8:0:0:8:313:-28.5316,-2.40824,0 1/1:3:0,3:0:0:3:117:-10.9104,-0.90309,0 dDocent_Contig_13454 90 . C A 692.925 . AB=0.591837;ABP=6.59988;AC=3;AF=0.5;AN=6;AO=29;CIGAR=1X;DP=49;DPB=49;DPRA=0;EPP=65.983;EPPR=46.4397;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=984;QR=693;RO=20;RPL=29;RPP=65.983;RPPR=46.4397;RPR=0;RUN=1;SAF=29;SAP=65.983;SAR=0;SRF=20;SRP=46.4397;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:20:3,17:3:102:17:570:-45.5963,0,-3.4962 0/1:11:9,2:9:312:2:69:-3.24133,0,-25.1047 0/1:18:8,10:8:279:10:345:-25.965,0,-20.0305 dDocent_Contig_13455 36 . T C 416.762 . AB=0.46875;ABP=3.28173;AC=2;AF=0.333333;AN=6;AO=15;CIGAR=1X;DP=35;DPB=35;DPRA=5.33333;EPP=35.5824;EPPR=46.4397;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=601;QR=765;RO=20;RPL=0;RPP=35.5824;RPPR=46.4397;RPR=15;RUN=1;SAF=15;SAP=35.5824;SAR=0;SRF=20;SRP=46.4397;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:20:9,11:9:362:11:438:-33.7529,0,-26.9234 0/0:3:3,0:3:121:0:0:0,-0.90309,-11.28 0/1:12:8,4:8:282:4:163:-11.4461,0,-22.0925 dDocent_Contig_13458 154 . C T 550.509 . AB=0.375;ABP=10.6105;AC=3;AF=0.5;AN=6;AO=21;CIGAR=1X;DP=56;DPB=56;DPRA=0;EPP=48.6112;EPPR=79.0118;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=848;QR=1361;RO=35;RPL=0;RPP=48.6112;RPPR=79.0118;RPR=21;RUN=1;SAF=0;SAP=48.6112;SAR=21;SRF=0;SRP=79.0118;SRR=35;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:30:17,13:17:654:13:527:-38.7459,0,-50.1437 0/1:18:12,6:12:484:6:242:-16.7384,0,-38.4934 0/1:8:6,2:6:223:2:79:-5.08939,0,-18.0134 dDocent_Contig_13459 16 . A G 69.3161 . AB=0.333333;ABP=5.18177;AC=1;AF=0.166667;AN=6;AO=3;CIGAR=1X;DP=65;DPB=65;DPRA=0.321429;EPP=9.52472;EPPR=137.642;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=123;QR=2487;RO=62;RPL=0;RPP=9.52472;RPPR=137.642;RPR=3;RUN=1;SAF=3;SAP=9.52472;SAR=0;SRF=62;SRP=137.642;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:40:40,0:40:1590:0:0:0,-12.0412,-143.333 0/1:9:6,3:6:245:3:123:-8.75552,0,-19.7202 0/0:16:16,0:16:652:0:0:0,-4.81648,-59.0125 dDocent_Contig_13460 10 . C T 54.0406 . AB=0.272727;ABP=7.94546;AC=1;AF=0.166667;AN=6;AO=5;CIGAR=1X;DP=157;DPB=157;DPRA=1.20652;EPP=13.8677;EPPR=330.903;GTI=0;LEN=1;MEANALT=1.5;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=3.46945e-18;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=187;QR=6021;RO=151;RPL=0;RPP=13.8677;RPPR=330.903;RPR=5;RUN=1;SAF=5;SAP=13.8677;SAR=0;SRF=151;SRP=330.903;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:100:97,2:97:3870:2:74:0,-23.1658,-341.254 0/1:11:8,3:8:326:3:113:-7.22797,0,-26.3985 0/0:46:46,0:46:1825:0:0:0,-13.8474,-164.455 dDocent_Contig_13461 59 . G A 40.0235 . AB=0;ABP=0;AC=0;AF=0;AN=6;AO=3;CIGAR=13M1X3M;DP=79;DPB=78.5882;DPRA=11.4;EPP=9.52472;EPPR=133.299;GTI=0;LEN=1;MEANALT=8;MQM=60;MQMR=60;NS=3;NUMALT=3;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=27;QR=2129;RO=60;RPL=3;RPP=9.52472;RPPR=133.299;RPR=0;RUN=1;SAF=3;SAP=9.52472;SAR=0;SRF=60;SRP=133.299;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|0:57:44,1,3,2:44:1558:1,3,2:37,27,14:0,-10.1988,-136.994,-11.732,-135.781,-137.906,-12.5993,-136.646,-138.16,-139.072 0|0:5:4,0,0,0:4:145:0,0,0:0,0,0:0,-1.20412,-13.0851,-1.20412,-13.0851,-13.0851,-1.20412,-13.0851,-13.0851,-13.0851 0|0:17:12,3,0,2:12:426:3,0,2:113,0,15:-5.82594,0,-34.0469,-9.4383,-34.9499,-44.2183,-8.8109,-34.242,-43.5038,-42.9017 dDocent_Contig_13462 11 . T C 168.635 . AB=0.235294;ABP=23.7032;AC=1;AF=0.166667;AN=6;AO=8;CIGAR=1X;DP=66;DPB=66;DPRA=2.125;EPP=20.3821;EPPR=128.956;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=314;QR=2335;RO=58;RPL=0;RPP=20.3821;RPPR=128.956;RPR=8;RUN=1;SAF=8;SAP=20.3821;SAR=0;SRF=58;SRP=128.956;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:34:26,8:26:1051:8:314:-18.3864,0,-84.6449 0/0:10:10,0:10:406:0:0:0,-3.0103,-36.9006 0/0:22:22,0:22:878:0:0:0,-6.62266,-79.3234 dDocent_Contig_13463 135 . T C 737.961 . AB=0.4375;ABP=5.18177;AC=3;AF=0.5;AN=6;AO=28;CIGAR=1X;DP=64;DPB=64;DPRA=0;EPP=55.4358;EPPR=62.6327;GTI=0;LEN=1;MEANALT=1.33333;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=0.964286;PAIREDR=0.942857;PAO=0;PQA=0;PQR=0;PRO=0;QA=1083;QR=1197;RO=35;RPL=0;RPP=63.8115;RPPR=79.0118;RPR=28;RUN=1;SAF=1;SAP=55.4358;SAR=27;SRF=2;SRP=62.6327;SRR=33;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:24:9,15:9:306:15:585:-45.7659,0,-20.6459 0/1:16:13,3:13:447:3:117:-6.0939,0,-35.7431 0/1:24:13,10:13:444:10:381:-27.4591,0,-33.1038 dDocent_Contig_13465 16 . T C 213.977 . AB=0.304348;ABP=10.6577;AC=4;AF=0.666667;AN=6;AO=9;CIGAR=1X;DP=25;DPB=25;DPRA=0;EPP=22.5536;EPPR=37.7539;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=342;QR=633;RO=16;RPL=0;RPP=22.5536;RPPR=37.7539;RPR=9;RUN=1;SAF=9;SAP=22.5536;SAR=0;SRF=16;SRP=37.7539;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:16:11,5:11:433:5:204:-13.9276,0,-34.5056 0/1:7:5,2:5:200:2:81:-5.57852,0,-16.2723 1/1:2:0,2:0:0:2:57:-5.41407,-0.60206,0 dDocent_Contig_13466 77 . G A 104.07 . AB=0.2;ABP=38.1882;AC=2;AF=0.333333;AN=6;AO=12;CIGAR=1X;DP=79;DPB=79;DPRA=0;EPP=29.068;EPPR=148.499;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=399;QR=2176;RO=67;RPL=12;RPP=29.068;RPPR=148.499;RPR=0;RUN=1;SAF=12;SAP=29.068;SAR=0;SRF=67;SRP=148.499;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:34:28,6:28:906:6:197:-7.81741,0,-71.604 0/0:34:31,3:31:994:3:101:0,-0.811193,-80.3315 0/1:11:8,3:8:276:3:101:-6.11227,0,-21.8647 dDocent_Contig_13467 86 . G C 104.644 . AB=0.333333;ABP=7.35324;AC=2;AF=0.333333;AN=6;AO=6;CIGAR=1X;DP=33;DPB=33;DPRA=0.6;EPP=16.0391;EPPR=61.6401;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=208;QR=970;RO=27;RPL=6;RPP=16.0391;RPPR=61.6401;RPR=0;RUN=1;SAF=6;SAP=16.0391;SAR=0;SRF=27;SRP=61.6401;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:15:15,0:15:548:0:0:0,-4.51545,-49.6581 0/1:11:8,3:8:284:3:100:-6.01933,0,-22.5916 0/1:7:4,3:4:138:3:108:-7.96796,0,-10.6532 dDocent_Contig_13469 7 . A G 237.674 . AB=0.262295;ABP=32.9481;AC=3;AF=0.5;AN=6;AO=16;CIGAR=1X;DP=61;DPB=61;DPRA=0;EPP=37.7539;EPPR=100.727;GTI=0;LEN=1;MEANALT=1;MQM=56.25;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=0;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=522;QR=1706;RO=45;RPL=0;RPP=37.7539;RPPR=100.727;RPR=16;RUN=1;SAF=16;SAP=37.7539;SAR=0;SRF=45;SRP=100.727;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:25:15,10:15:577:10:325:-21.7406,0,-44.7465 0/1:19:16,3:16:597:3:98:-3.42476,0,-48.3445 0/1:17:14,3:14:532:3:99:-4.11846,0,-43.1051 dDocent_Contig_13470 27 . T C 64.3007 . AB=0.1;ABP=86.3948;AC=1;AF=0.166667;AN=6;AO=6;CIGAR=5M1X7M;DP=93;DPB=93.2308;DPRA=2.06897;EPP=16.0391;EPPR=174.557;GTI=0;LEN=1;MEANALT=3;MQM=60;MQMR=60;NS=3;NUMALT=2;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=244;QR=3083;RO=79;RPL=0;RPP=16.0391;RPPR=174.557;RPR=6;RUN=1;SAF=6;SAP=16.0391;SAR=0;SRF=79;SRP=174.557;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|1:60:51,1,6:51:1990:1,6:39,244:-4.796,-16.9433,-180.215,0,-160.388,-161.787 0|0:4:2,2,0:2:79:2,0:67,0:-5.15657,0,-6.29351,-5.75863,-6.89557,-12.2895 0|0:29:26,2,0:26:1014:2,0:76,0:0,-1.61371,-84.3403,-7.82678,-84.9423,-91.1745 dDocent_Contig_13471 9 . G A 136.008 . AB=0.625;ABP=4.09604;AC=1;AF=0.166667;AN=6;AO=5;CIGAR=1X;DP=34;DPB=34;DPRA=0.615385;EPP=13.8677;EPPR=65.983;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=57.5172;NS=3;NUMALT=1;ODDS=0;PAIRED=0;PAIREDR=0.793103;PAO=0;PQA=0;PQR=0;PRO=0;QA=194;QR=1094;RO=29;RPL=0;RPP=13.8677;RPPR=65.983;RPR=5;RUN=1;SAF=5;SAP=13.8677;SAR=0;SRF=29;SRP=65.983;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:6:6,0:6:217:0:0:0,-1.80618,-19.8776 0/1:8:3,5:3:115:5:194:-15.4246,0,-5.49793 0/0:20:20,0:20:762:0:0:0,-6.0206,-68.9049 dDocent_Contig_13472 24 . A G 668.822 . AB=0.545455;ABP=3.79993;AC=3;AF=0.5;AN=6;AO=24;CIGAR=1X;DP=44;DPB=44;DPRA=0;EPP=55.1256;EPPR=44.2683;GTI=0;LEN=1;MEANALT=1.33333;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=0.916667;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=923;QR=747;RO=19;RPL=0;RPP=55.1256;RPPR=44.2683;RPR=24;RUN=1;SAF=24;SAP=55.1256;SAR=0;SRF=19;SRP=44.2683;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:16:6,9:6:243:9:348:-26.8518,0,-17.4176 0/1:20:12,8:12:475:8:303:-21.6023,0,-37.078 0/1:8:1,7:1:29:7:272:-22.438,0,-0.491416 dDocent_Contig_13473 61 . A T 1799.69 . AB=0.157895;ABP=22.325;AC=0;AF=0;AN=6;AO=3;CIGAR=1X1M2X4M;DP=75;DPB=77;DPRA=0;EPP=9.52472;EPPR=29.068;GTI=0;LEN=1;MEANALT=2;MQM=60;MQMR=60;NS=3;NUMALT=3;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=121;QR=475;RO=12;RPL=3;RPP=9.52472;RPPR=29.068;RPR=0;RUN=1;SAF=3;SAP=9.52472;SAR=0;SRF=12;SRP=29.068;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|0:46:6,0,0,39:6:238:0,0,39:0,0,1547:-125.521,-127.327,-146.919,-127.327,-146.919,-146.919,0,-19.5806,-19.5806,-7.84044 0|0:10:0,0,2,8:0:0:0,2,8:0,69,306:-31.0884,-31.0884,-31.0884,-25.4922,-25.4922,-24.8901,-5.94851,-5.94851,0,-3.54027 0|0:19:6,3,0,10:6:237:3,0,10:121,0,375:-28.8779,-20.7034,-39.3106,-30.6841,-40.2137,-50.1912,0,-9.52038,-19.4974,-16.4871 dDocent_Contig_13475 14 . G A 39.4529 . AB=0.157895;ABP=22.325;AC=1;AF=0.166667;AN=6;AO=3;CIGAR=1X;DP=47;DPB=47;DPRA=1.35714;EPP=9.52472;EPPR=98.5551;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=120;QR=1742;RO=44;RPL=0;RPP=9.52472;RPPR=98.5551;RPR=3;RUN=1;SAF=3;SAP=9.52472;SAR=0;SRF=44;SRP=98.5551;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:19:16,3:16:629:3:120:-5.46812,0,-51.2186 0/0:16:16,0:16:640:0:0:0,-4.81648,-57.93 0/0:12:12,0:12:473:0:0:0,-3.61236,-42.9192 dDocent_Contig_13476 30 . C T 77.1011 . AB=0.25;ABP=11.6962;AC=1;AF=0.166667;AN=6;AO=4;CIGAR=1X;DP=34;DPB=34;DPRA=1.77778;EPP=11.6962;EPPR=68.1545;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=0;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=152;QR=1179;RO=30;RPL=0;RPP=11.6962;RPPR=68.1545;RPR=4;RUN=1;SAF=4;SAP=11.6962;SAR=0;SRF=30;SRP=68.1545;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:16:12,4:12:472:4:152:-9.23225,0,-38.0116 0/0:17:17,0:17:666:0:0:0,-5.11751,-60.2692 0/0:1:1,0:1:41:0:0:0,-0.30103,-4.09457 dDocent_Contig_13477 27 . A G 41.8627 . AB=0.5;ABP=3.0103;AC=1;AF=0.166667;AN=6;AO=2;CIGAR=1X;DP=36;DPB=36;DPRA=0.25;EPP=7.35324;EPPR=76.8404;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=76;QR=1338;RO=34;RPL=0;RPP=7.35324;RPPR=76.8404;RPR=2;RUN=1;SAF=2;SAP=7.35324;SAR=0;SRF=34;SRP=76.8404;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:24:24,0:24:940:0:0:0,-7.22472,-84.902 0/1:4:2,2:2:78:2:76:-6.01014,0,-6.19866 0/0:8:8,0:8:320:0:0:0,-2.40824,-29.1673 dDocent_Contig_13478 8 . G A 3955.2 . AB=0.125;ABP=188.671;AC=1;AF=0.166667;AN=6;AO=19;CIGAR=1X1M1X;DP=152;DPB=152;DPRA=0;EPP=44.2683;EPPR=39.9253;GTI=0;LEN=1;MEANALT=2;MQM=60;MQMR=60;NS=3;NUMALT=2;ODDS=1.38778e-17;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=717;QR=653;RO=17;RPL=0;RPP=44.2683;RPPR=39.9253;RPR=19;RUN=1;SAF=19;SAP=44.2683;SAR=0;SRF=17;SRP=39.9253;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|0:62:10,8,44:10:390:8,44:306,1740:-140.18,-118.082,-147.732,0,-6.95622,-18.8176 0|0:55:7,3,45:7:263:3,45:115,1802:-146.041,-138.71,-159.351,0,-12.1003,-7.99508 1|0:35:0,8,27:0:0:8,27:296,1094:-114.822,-90.6165,-88.2083,-24.5831,0,-16.4553 dDocent_Contig_13479 19 . T C 351.934 . AB=0.333333;ABP=13.8677;AC=3;AF=0.5;AN=6;AO=15;CIGAR=1X;DP=45;DPB=45;DPRA=0;EPP=35.5824;EPPR=68.1545;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=590;QR=1200;RO=30;RPL=0;RPP=35.5824;RPPR=68.1545;RPR=15;RUN=1;SAF=15;SAP=35.5824;SAR=0;SRF=30;SRP=68.1545;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:14:11,3:11:440:3:113:-6.32396,0,-35.7387 0/1:26:15,11:15:597:11:437:-31.8574,0,-46.2405 0/1:5:4,1:4:163:1:40:-2.49053,0,-13.5533 dDocent_Contig_13480 77 . A G 165.471 . AB=0.25;ABP=24.725;AC=3;AF=0.5;AN=6;AO=10;CIGAR=1X;DP=40;DPB=40;DPRA=0;EPP=24.725;EPPR=68.1545;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=3.46945e-18;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=367;QR=1098;RO=30;RPL=10;RPP=24.725;RPPR=68.1545;RPR=0;RUN=1;SAF=10;SAP=24.725;SAR=0;SRF=30;SRP=68.1545;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:13:10,3:10:367:3:111:-6.44053,0,-29.465 0/1:10:6,4:6:218:4:148:-10.6717,0,-16.9625 0/1:17:14,3:14:513:3:108:-4.95766,0,-41.3931 dDocent_Contig_13481 40 . A C 150.178 . AB=0.233333;ABP=21.5402;AC=1;AF=0.166667;AN=6;AO=7;CIGAR=1X;DP=39;DPB=39;DPRA=6.66667;EPP=18.2106;EPPR=72.4974;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=280;QR=1275;RO=32;RPL=0;RPP=18.2106;RPPR=72.4974;RPR=7;RUN=1;SAF=7;SAP=18.2106;SAR=0;SRF=32;SRP=72.4974;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:30:23,7:23:917:7:280:-16.5403,0,-73.8066 0/0:2:2,0:2:80:0:0:0,-0.60206,-7.59157 0/0:7:7,0:7:278:0:0:0,-2.10721,-25.3876 dDocent_Contig_13482 57 . G A 492.369 . AB=0.365854;ABP=9.41879;AC=4;AF=0.666667;AN=6;AO=18;CIGAR=1X;DP=44;DPB=44;DPRA=0;EPP=42.0968;EPPR=57.2971;GTI=0;LEN=1;MEANALT=1.33333;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=709;QR=991;RO=25;RPL=18;RPP=42.0968;RPPR=57.2971;RPR=0;RUN=1;SAF=18;SAP=42.0968;SAR=0;SRF=25;SRP=57.2971;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:31:19,11:19:752:11:438:-30.6259,0,-58.8617 1/1:3:0,3:0:0:3:121:-11.28,-0.90309,0 0/1:10:6,4:6:239:4:150:-10.8537,0,-18.8736 dDocent_Contig_13483 11 . T A 176.858 . AB=0.275862;ABP=15.6647;AC=2;AF=0.333333;AN=6;AO=8;CIGAR=1X;DP=43;DPB=43;DPRA=1.03571;EPP=20.3821;EPPR=79.0118;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=1.73472e-18;PAIRED=1;PAIREDR=0.885714;PAO=0;PQA=0;PQR=0;PRO=0;QA=324;QR=1360;RO=35;RPL=0;RPP=20.3821;RPPR=79.0118;RPR=8;RUN=1;SAF=8;SAP=20.3821;SAR=0;SRF=35;SRP=79.0118;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:16:10,6:10:398:6:242:-17.3405,0,-31.3603 0/0:14:14,0:14:550:0:0:0,-4.21442,-49.8425 0/1:13:11,2:11:412:2:82:-3.86629,0,-33.5092 dDocent_Contig_13484 144 . A G 45.2643 . AB=0.171429;ABP=35.8306;AC=2;AF=0.333333;AN=6;AO=6;CIGAR=1X;DP=39;DPB=39;DPRA=4.375;EPP=16.0391;EPPR=58.3499;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=57.6061;NS=3;NUMALT=1;ODDS=3.46945e-18;PAIRED=1;PAIREDR=0.939394;PAO=0;PQA=0;PQR=0;PRO=0;QA=199;QR=1193;RO=33;RPL=0;RPP=16.0391;RPPR=74.6689;RPR=6;RUN=1;SAF=0;SAP=16.0391;SAR=6;SRF=2;SRP=58.3499;SRR=31;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:4:4,0:4:147:0:0:0,-1.20412,-13.5899 0/1:26:22,4:22:795:4:126:-3.82475,0,-62.9408 0/1:9:7,2:7:251:2:73:-4.22143,0,-17.8523 dDocent_Contig_13488 12 . T G 739.299 . AB=0.465517;ABP=3.60933;AC=3;AF=0.5;AN=6;AO=27;CIGAR=1X;DP=58;DPB=58;DPRA=0;EPP=61.6401;EPPR=70.3259;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=1065;QR=1094;RO=31;RPL=0;RPP=61.6401;RPPR=70.3259;RPR=27;RUN=1;SAF=27;SAP=61.6401;SAR=0;SRF=31;SRP=70.3259;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:33:19,14:19:666:14:560:-40.8083,0,-50.3284 0/1:7:3,4:3:110:4:149:-11.6654,0,-8.15379 0/1:18:9,9:9:318:9:356:-26.979,0,-23.5405 dDocent_Contig_13489 7 . A C 77.3232 . AB=0.75;ABP=5.18177;AC=1;AF=0.166667;AN=6;AO=6;CIGAR=1X;DP=65;DPB=65;DPRA=0;EPP=16.0391;EPPR=131.127;GTI=0;LEN=1;MEANALT=1;MQM=59.8333;MQMR=59.1186;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=0.966102;PAO=0;PQA=0;PQR=0;PRO=0;QA=230;QR=2264;RO=59;RPL=0;RPP=16.0391;RPPR=131.127;RPR=6;RUN=1;SAF=6;SAP=16.0391;SAR=0;SRF=59;SRP=131.127;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:39:37,2:37:1425:2:78:0,-4.3367,-121.126 0/1:4:1,3:1:38:3:115:-9.52077,0,-2.59315 0/0:22:21,1:21:801:1:37:0,-2.92539,-67.6012 dDocent_Contig_13491 7 . A G 494.452 . AB=0.305556;ABP=14.8328;AC=4;AF=0.666667;AN=6;AO=20;CIGAR=1X;DP=45;DPB=45;DPRA=0;EPP=46.4397;EPPR=55.1256;GTI=0;LEN=1;MEANALT=1.33333;MQM=57.6;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=697;QR=921;RO=24;RPL=0;RPP=46.4397;RPPR=55.1256;RPR=20;RUN=1;SAF=20;SAP=46.4397;SAR=0;SRF=24;SRP=55.1256;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:19:14,4:14:539:4:140:-7.36691,0,-43.3086 1/1:9:0,9:0:0:9:319:-29.0164,-2.70927,0 0/1:17:10,7:10:382:7:238:-16.5848,0,-29.6174 dDocent_Contig_13492 15 . C A 2107.42 . AB=0.319149;ABP=43.067;AC=5;AF=0.833333;AN=6;AO=45;CIGAR=1X2M;DP=141;DPB=141;DPRA=0;EPP=100.727;EPPR=92.0407;GTI=0;LEN=1;MEANALT=2.33333;MQM=60;MQMR=60;NS=3;NUMALT=2;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=1793;QR=1603;RO=41;RPL=0;RPP=100.727;RPPR=92.0407;RPR=45;RUN=1;SAF=45;SAP=100.727;SAR=0;SRF=41;SRP=92.0407;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 1|1:81:21,26,34:21:818:26,34:1028,1344:-121.645,-43.3696,-102.765,-17.3787,0,-74.3655 1|1:12:0,8,4:0:0:8,4:302,162:-38.4927,-13.7628,-11.3546,-25.1253,0,-23.9212 0|1:48:20,19,7:20:785:19,7:755,287:-56.127,0,-58.8255,-38.4562,-40.8527,-100.903 dDocent_Contig_13493 16 . T G 205.574 . AB=0.21519;ABP=58.6715;AC=3;AF=0.5;AN=6;AO=17;CIGAR=1X;DP=79;DPB=79;DPRA=0;EPP=39.9253;EPPR=137.642;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=0;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=541;QR=2500;RO=62;RPL=0;RPP=39.9253;RPPR=137.642;RPR=17;RUN=1;SAF=17;SAP=39.9253;SAR=0;SRF=62;SRP=137.642;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:53:40,13:40:1612:13:409:-21.1603,0,-129.354 0/1:4:3,1:3:120:1:31:-1.89533,0,-9.98357 0/1:22:19,3:19:768:3:101:-2.80117,0,-62.818 dDocent_Contig_13495 33 . T A 262.801 . AB=0.197802;ABP=75.1939;AC=3;AF=0.5;AN=6;AO=18;CIGAR=1X;DP=91;DPB=91;DPRA=0;EPP=42.0968;EPPR=161.528;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=646;QR=2525;RO=73;RPL=0;RPP=42.0968;RPPR=161.528;RPR=18;RUN=1;SAF=18;SAP=42.0968;SAR=0;SRF=73;SRP=161.528;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:38:30,8:30:1065:8:273:-13.4494,0,-84.7053 0/1:31:24,7:24:870:7:251:-13.6035,0,-69.2804 0/1:22:19,3:19:590:3:122:-4.74983,0,-46.7629 dDocent_Contig_13496 19 . T G 84.8789 . AB=0.0645161;ABP=54.0749;AC=0;AF=0;AN=6;AO=2;CIGAR=3M1X10M;DP=61;DPB=57.5714;DPRA=0;EPP=7.35324;EPPR=105.07;GTI=0;LEN=1;MEANALT=3;MQM=60;MQMR=60;NS=3;NUMALT=3;ODDS=0;PAIRED=1;PAIREDR=0.957447;PAO=0;PQA=0;PQR=0;PRO=0;QA=78;QR=1821;RO=47;RPL=0;RPP=7.35324;RPPR=105.07;RPR=2;RUN=1;SAF=2;SAP=7.35324;SAR=0;SRF=47;SRP=105.07;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|0:31:22,2,2,5:22:850:2,2,5:72,78,194:-9.32401,-10.0781,-79.2809,-9.5327,-73.4709,-78.7419,0,-63.9432,-63.4038,-68.3109 0|0:13:12,0,0,1:12:475:0,0,1:0,0,41:-0.181177,-3.79354,-42.8754,-3.79354,-42.8754,-42.8754,0,-39.4902,-39.4902,-39.1892 0|0:17:13,2,0,2:13:496:2,0,2:75,0,79:-2.59713,-0.377147,-40.4536,-6.51052,-41.0557,-47.198,0,-34.5533,-40.6957,-40.0937 dDocent_Contig_13497 12 . C A 246.923 . AB=0.216667;ABP=44.8473;AC=2;AF=0.333333;AN=6;AO=14;CIGAR=1X;DP=82;DPB=82;DPRA=0;EPP=33.4109;EPPR=150.67;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=544;QR=2708;RO=68;RPL=0;RPP=33.4109;RPPR=150.67;RPR=14;RUN=1;SAF=14;SAP=33.4109;SAR=0;SRF=68;SRP=150.67;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:39:31,8:31:1255:8:310:-16.5227,0,-101.477 0/0:22:21,1:21:836:1:38:0,-2.82539,-71.7598 0/1:21:16,5:16:617:5:196:-11.6925,0,-49.5376 dDocent_Contig_13498 35 . A T 478.301 . AB=0.0526316;ABP=69.0688;AC=0;AF=0;AN=6;AO=2;CIGAR=1X2M1X2M2X;DP=68;DPB=68;DPRA=0;EPP=7.35324;EPPR=100.727;GTI=0;LEN=1;MEANALT=3;MQM=44.5;MQMR=60;NS=3;NUMALT=2;ODDS=0;PAIRED=0;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=79;QR=1764;RO=45;RPL=0;RPP=7.35324;RPPR=100.727;RPR=2;RUN=1;SAF=2;SAP=7.35324;SAR=0;SRF=45;SRP=100.727;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|0:38:26,2,9:26:1005:2,9:79,369:-22.6618,-24.6981,-106.621,0,-76.7608,-79.8486 0|0:6:3,0,3:3:120:0,3:0,122:-9.56631,-10.4694,-20.3513,0,-10.2848,-9.38172 0|0:24:16,0,8:16:639:0,8:0,311:-21.1248,-25.9413,-78.5799,0,-53.0305,-50.6222 dDocent_Contig_13500 158 . A C 351.916 . AB=0.483871;ABP=3.08035;AC=3;AF=0.5;AN=6;AO=15;CIGAR=1X;DP=31;DPB=31;DPRA=0;EPP=35.5824;EPPR=37.7539;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=542;QR=540;RO=16;RPL=15;RPP=35.5824;RPPR=37.7539;RPR=0;RUN=1;SAF=0;SAP=35.5824;SAR=15;SRF=0;SRP=37.7539;SRR=16;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:11:3,8:3:96:8:301:-24.1359,0,-5.64625 0/1:14:8,6:8:265:6:204:-14.4783,0,-19.9585 0/1:6:5,1:5:179:1:37:-1.89165,0,-14.654 dDocent_Contig_13501 14 . A G 968.397 . AB=0.443038;ABP=5.23675;AC=2;AF=0.333333;AN=6;AO=35;CIGAR=1M1D2M1X;DP=104;DPB=97;DPRA=1.58;EPP=79.0118;EPPR=152.842;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=3.46945e-18;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=1372;QR=2744;RO=69;RPL=0;RPP=79.0118;RPPR=152.842;RPR=35;RUN=1;SAF=35;SAP=79.0118;SAR=0;SRF=69;SRP=152.842;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|1:33:19,14:19:759:14:554:-40.2706,0,-58.7008 0|1:46:25,21:25:988:21:818:-60.092,0,-75.3776 0|0:25:25,0:25:997:0:0:0,-7.52575,-90.031 dDocent_Contig_13502 106 . N T 279.429 . AB=0.428571;ABP=3.32051;AC=6;AF=1;AN=6;AO=3;CIGAR=5X;DP=16;DPB=16;DPRA=1.75;EPP=9.52472;EPPR=0;GTI=0;LEN=1;MEANALT=2;MQM=60;MQMR=0;NS=3;NUMALT=3;ODDS=0;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=101;QR=0;RO=0;RPL=0;RPP=9.52472;RPPR=0;RPR=3;RUN=1;SAF=0;SAP=9.52472;SAR=3;SRF=0;SRP=0;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 1|1:7:0,0,4,3:0:0:0,4,3:0,137,101:-13.7593,-13.7593,-13.7593,-8.52074,-8.52074,-7.31662,-5.5086,-5.5086,0,-4.60551 1|1:5:0,3,2,0:0:0:3,2,0:86,62,0:-9.67031,-2.76914,-1.86605,-7.12228,0,-6.52022,-9.67031,-2.76914,-7.12228,-9.67031 1|1:4:0,3,0,0:0:0:3,0,0:87,0,0:-7.80613,-0.90309,0,-7.80613,-0.90309,-7.80613,-7.80613,-0.90309,-7.80613,-7.80613 dDocent_Contig_13503 122 . A G 133.867 . AB=0.428571;ABP=3.63072;AC=1;AF=0.166667;AN=6;AO=6;CIGAR=1X;DP=26;DPB=26;DPRA=2.33333;EPP=16.0391;EPPR=46.4397;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=212;QR=704;RO=20;RPL=0;RPP=16.0391;RPPR=46.4397;RPR=6;RUN=1;SAF=0;SAP=16.0391;SAR=6;SRF=0;SRP=46.4397;SRR=20;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:9:9,0:9:319:0:0:0,-2.70927,-29.0516 0/1:14:8,6:8:282:6:212:-15.2104,0,-21.5072 0/0:3:3,0:3:103:0:0:0,-0.90309,-9.6096 dDocent_Contig_13504 8 . G A 89.7591 . AB=0.155172;ABP=62.913;AC=3;AF=0.5;AN=6;AO=9;CIGAR=1X;DP=58;DPB=58;DPRA=0;EPP=22.5536;EPPR=109.412;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=339;QR=1863;RO=49;RPL=0;RPP=22.5536;RPPR=109.412;RPR=9;RUN=1;SAF=9;SAP=22.5536;SAR=0;SRF=49;SRP=109.412;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:30:27,3:27:1026:3:116:-1.7868,0,-83.6161 0/1:25:21,4:21:804:4:148:-6.15509,0,-65.1592 0/1:3:1,2:1:33:2:75:-6.21725,0,-2.39604 dDocent_Contig_13505 8 . G A 437.133 . AB=0.0922131;ABP=1412.72;AC=1;AF=0.166667;AN=6;AO=115;CIGAR=1X1M;DP=1519;DPB=1519;DPRA=0;EPP=252.73;EPPR=2721.69;GTI=0;LEN=1;MEANALT=6;MQM=60;MQMR=59.8435;NS=3;NUMALT=3;ODDS=0;PAIRED=0.913043;PAIREDR=0.936901;PAO=0;PQA=0;PQR=0;PRO=0;QA=4332;QR=47354;RO=1252;RPL=0;RPP=252.73;RPPR=2721.69;RPR=115;RUN=1;SAF=115;SAP=252.73;SAR=0;SRF=1252;SRP=2721.69;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|1:683:559,9,24,69:559:21188:9,24,69:339,913,2605:-45.2233,-185.721,-1919.15,-138.618,-1846.97,-1867.53,0,-1708.36,-1661.25,-1715.36 0|0:293:221,21,22,21:221:8270:21,22,21:797,824,782:-0.952836,-2.17686,-672.075,0,-610.916,-669.596,-3.47657,-614.392,-612.214,-673.373 0|0:543:472,15,19,25:472:17896:15,19,25:566,730,945:0,-95.6987,-1558.51,-82.1549,-1503.1,-1543.77,-64.6268,-1485.57,-1472.03,-1524.43 dDocent_Contig_13506 7 . A G 2943.37 . AB=0.486275;ABP=3.42756;AC=3;AF=0.5;AN=6;AO=124;CIGAR=1X3M;DP=255;DPB=255;DPRA=0;EPP=272.273;EPPR=191.928;GTI=0;LEN=1;MEANALT=5;MQM=55.0565;MQMR=59.4483;NS=3;NUMALT=2;ODDS=0;PAIRED=0.306452;PAIREDR=0.37931;PAO=0;PQA=0;PQR=0;PRO=0;QA=4078;QR=3312;RO=87;RPL=0;RPP=272.273;RPPR=191.928;RPR=124;RUN=1;SAF=124;SAP=272.273;SAR=0;SRF=87;SRP=191.928;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|1:53:37,1,15:37:1417:1,15:33,452:-24.4346,-32.9733,-148.909,0,-113.639,-111.719 0|1:117:25,20,61:25:946:20,61:688,2033:-154.207,-110.85,-182.393,0,-26.7086,-59.2173 0|1:85:25,5,48:25:949:5,48:178,1593:-121.218,-115.424,-191.744,0,-64.5445,-63.4098 dDocent_Contig_13508 28 . G A 671.253 . AB=0.409836;ABP=7.31765;AC=3;AF=0.5;AN=6;AO=25;CIGAR=1X;DP=61;DPB=61;DPRA=0;EPP=57.2971;EPPR=81.1833;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=999;QR=1441;RO=36;RPL=0;RPP=57.2971;RPPR=81.1833;RPR=25;RUN=1;SAF=25;SAP=57.2971;SAR=0;SRF=36;SRP=81.1833;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:41:23,18:23:925:18:717:-52.5123,0,-71.2124 0/1:10:8,2:8:320:2:81:-4.67543,0,-26.1571 0/1:10:5,5:5:196:5:201:-15.4602,0,-15.0028 dDocent_Contig_13509 8 . G A 574.26 . AB=0.26;ABP=53.041;AC=1;AF=0.166667;AN=6;AO=28;CIGAR=1X;DP=159;DPB=159;DPRA=10.8571;EPP=63.8115;EPPR=287.473;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=1055;QR=4982;RO=131;RPL=0;RPP=63.8115;RPPR=287.473;RPR=28;RUN=1;SAF=28;SAP=63.8115;SAR=0;SRF=131;SRP=287.473;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:100:74,26:74:2827:26:986:-58.9489,0,-224.502 0/0:7:7,0:7:266:0:0:0,-2.10721,-24.3017 0/0:52:50,2:50:1889:2:69:0,-9.10223,-163.705 dDocent_Contig_13510 150 . C T 37.6258 . AB=0.133333;ABP=20.5268;AC=1;AF=0.166667;AN=6;AO=2;CIGAR=2X;DP=26;DPB=26;DPRA=7.5;EPP=7.35324;EPPR=33.4109;GTI=0;LEN=1;MEANALT=2;MQM=36;MQMR=60;NS=3;NUMALT=2;ODDS=0;PAIRED=0;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=80;QR=553;RO=14;RPL=0;RPP=7.35324;RPPR=33.4109;RPR=2;RUN=1;SAF=0;SAP=7.35324;SAR=2;SRF=0;SRP=33.4109;SRR=14;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|0:9:6,0,3:6:236:0,3:0,113:-0.182018,-1.9882,-21.5935,0,-19.8051,-18.902 0|0:2:0,0,2:0:0:0,2:0,78:-1.99393,-1.99393,-1.99393,-0.60206,-0.60206,0 0|1:15:8,2,5:8:317:2,5:80,183:-3.27794,0,-25.6719,-2.87063,-23.3968,-27.4976 dDocent_Contig_13512 16 . C T 1425.34 . AB=0.541667;ABP=4.45795;AC=3;AF=0.5;AN=6;AO=52;CIGAR=1X;DP=96;DPB=96;DPRA=0;EPP=115.927;EPPR=98.5551;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=1955;QR=1761;RO=44;RPL=0;RPP=115.927;RPPR=98.5551;RPR=52;RUN=1;SAF=52;SAP=115.927;SAR=0;SRF=44;SRP=98.5551;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:76:29,47:29:1159:47:1764:-136.134,0,-81.7125 0/1:10:8,2:8:321:2:78:-4.39317,0,-26.2473 0/1:10:7,3:7:281:3:113:-7.52867,0,-22.6519 dDocent_Contig_13513 28 . T A 1186.08 . AB=0.604167;ABP=7.5342;AC=4;AF=0.666667;AN=6;AO=39;CIGAR=1X;DP=58;DPB=58;DPRA=0;EPP=87.6977;EPPR=44.2683;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=1506;QR=727;RO=19;RPL=0;RPP=87.6977;RPPR=44.2683;RPR=39;RUN=1;SAF=39;SAP=87.6977;SAR=0;SRF=19;SRP=44.2683;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:30:10,20:10:380:20:759:-59.6007,0,-25.5179 1/1:10:0,10:0:0:10:395:-35.908,-3.0103,0 0/1:18:9,9:9:347:9:352:-26.6221,0,-26.1624 dDocent_Contig_13514 33 . G A 202.98 . AB=0.25;ABP=11.6962;AC=3;AF=0.5;AN=6;AO=4;CIGAR=1X3M;DP=22;DPB=22;DPRA=1.33333;EPP=11.6962;EPPR=31.2394;GTI=0;LEN=1;MEANALT=2;MQM=60;MQMR=60;NS=3;NUMALT=2;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=158;QR=508;RO=13;RPL=0;RPP=11.6962;RPPR=31.2394;RPR=4;RUN=1;SAF=4;SAP=11.6962;SAR=0;SRF=13;SRP=31.2394;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|1:11:7,3,1:7:264:3,1:116,41:-7.40302,0,-20.7019,-6.12036,-18.2168,-27.4462 1|1:5:0,2,3:0:0:2,3:78,117:-16.4178,-10.0062,-9.40414,-6.80124,0,-5.89815 0|0:6:6,0,0:6:244:0,0:0,0:0,-1.80618,-22.3388,-1.80618,-22.3388,-22.3388 dDocent_Contig_13515 17 . G A 64.2469 . AB=0.162162;ABP=39.6906;AC=2;AF=0.333333;AN=6;AO=6;CIGAR=1X2M3I2M;DP=38;DPB=41.6;DPRA=18.5;EPP=16.0391;EPPR=70.3259;GTI=0;LEN=1;MEANALT=1.5;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=227;QR=1251;RO=31;RPL=0;RPP=16.0391;RPPR=70.3259;RPR=6;RUN=1;SAF=6;SAP=16.0391;SAR=0;SRF=31;SRP=70.3259;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|1:25:21,3:21:848:3:114:-3.00561,0,-68.9985 0|0:1:1,0:1:41:0:0:0,-0.30103,-4.09457 0|1:12:9,3:9:362:3:113:-6.92718,0,-29.3322 dDocent_Contig_13516 10 . T G 660.411 . AB=0.339286;ABP=15.5738;AC=2;AF=0.333334;AN=6;AO=19;CIGAR=1M1X2M;DP=56;DPB=52;DPRA=0;EPP=44.2683;EPPR=46.4397;GTI=0;LEN=1;MEANALT=2.66667;MQM=60;MQMR=60;NS=3;NUMALT=3;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=761;QR=785;RO=20;RPL=0;RPP=44.2683;RPPR=46.4397;RPR=19;RUN=1;SAF=19;SAP=44.2683;SAR=0;SRF=20;SRP=46.4397;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|0:18:13,3,0,2:13:512:3,0,2:118,0,82:-5.78226,0,-41.2045,-9.69565,-42.1076,-51.8127,-2.92087,-35.3373,-45.0427,-44.4407 0|0:22:7,5,5,4:7:273:5,5,4:202,181,162:-14.557,0,-20.942,-3.10231,-8.88012,-24.0303,-3.29753,-9.0808,-12.1752,-24.5391 1|1:16:0,0,3,13:0:0:0,3,13:0,111,517:-51.224,-51.224,-51.224,-42.9605,-42.9605,-42.0574,-8.61415,-8.61415,0,-4.70076 dDocent_Contig_13517 108 . C A 87.9516 . AB=0.272727;ABP=12.8806;AC=2;AF=0.333333;AN=6;AO=7;CIGAR=1X;DP=39;DPB=39;DPRA=0;EPP=18.2106;EPPR=72.4974;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=53.4375;NS=3;NUMALT=1;ODDS=0;PAIRED=0;PAIREDR=0.65625;PAO=0;PQA=0;PQR=0;PRO=0;QA=238;QR=1038;RO=32;RPL=0;RPP=18.2106;RPPR=72.4974;RPR=7;RUN=1;SAF=0;SAP=18.2106;SAR=7;SRF=0;SRP=72.4974;SRR=32;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:14:11,3:11:361:3:100:-5.11611,0,-26.933 0/0:17:16,1:16:510:1:35:0,-1.61888,-39.025 0/1:8:5,3:5:167:3:103:-7.20178,0,-12.9511 dDocent_Contig_13518 66 . C T 562.902 . AB=0.516129;ABP=3.08035;AC=4;AF=0.666667;AN=6;AO=19;CIGAR=1X;DP=34;DPB=34;DPRA=0;EPP=44.2683;EPPR=35.5824;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=756;QR=612;RO=15;RPL=19;RPP=44.2683;RPPR=35.5824;RPR=0;RUN=1;SAF=19;SAP=44.2683;SAR=0;SRF=15;SRP=35.5824;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:19:8,11:8:326:11:444:-34.596,0,-23.9903 1/1:3:0,3:0:0:3:114:-10.6318,-0.90309,0 0/1:12:7,5:7:286:5:198:-14.585,0,-22.5025 dDocent_Contig_13519 9 . C T 89.8285 . AB=0.171429;ABP=35.8306;AC=2;AF=0.333333;AN=6;AO=6;CIGAR=1X;DP=55;DPB=55;DPRA=0.875;EPP=16.0391;EPPR=109.412;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=55.0408;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=230;QR=1865;RO=49;RPL=0;RPP=16.0391;RPPR=109.412;RPR=6;RUN=1;SAF=6;SAP=16.0391;SAR=0;SRF=49;SRP=109.412;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:20:20,0:20:762:0:0:0,-6.0206,-68.9083 0/1:12:8,4:8:311:4:156:-10.8049,0,-22.3716 0/1:23:21,2:21:792:2:74:-0.101744,0,-54.9159 dDocent_Contig_13520 118 . T C 47.753 . AB=0.139535;ABP=51.5402;AC=1;AF=0.166667;AN=6;AO=6;CIGAR=1X;DP=69;DPB=69;DPRA=3.30769;EPP=16.0391;EPPR=139.813;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=210;QR=2227;RO=63;RPL=0;RPP=16.0391;RPPR=139.813;RPR=6;RUN=1;SAF=0;SAP=16.0391;SAR=6;SRF=0;SRP=139.813;SRR=63;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:43:37,6:37:1286:6:210:-6.29817,0,-103.094 0/0:12:12,0:12:436:0:0:0,-3.61236,-39.5824 0/0:14:14,0:14:505:0:0:0,-4.21442,-45.7878 dDocent_Contig_13521 11 . G A 3243.41 . AB=0.0271845;ABP=1003.02;AC=0;AF=0;AN=6;AO=14;CIGAR=3M1X;DP=515;DPB=515;DPRA=0;EPP=33.4109;EPPR=528.507;GTI=0;LEN=1;MEANALT=6.33333;MQM=59.5;MQMR=58.405;NS=3;NUMALT=4;ODDS=0;PAIRED=1;PAIREDR=0.942149;PAO=0;PQA=0;PQR=0;PRO=0;QA=554;QR=9423;RO=242;RPL=0;RPP=33.4109;RPPR=528.507;RPR=14;RUN=1;SAF=14;SAP=33.4109;SAR=0;SRF=242;SRP=528.507;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|0:301:130,58,71,21,4:130:5059:58,71,21,4:2272,2732,808,161:-184.688,-36.9914,-431.049,0,-224.685,-390.142,-157.483,-382.17,-345.177,-562.678,-210.552,-435.239,-398.246,-555.73,-620.865 0|0:70:34,7,17,3,6:34:1314:7,17,3,6:262,652,117,232:-43.241,-32.0222,-135.114,0,-83.744,-100.082,-43.8578,-127.603,-95.5809,-148.155,-34.4374,-118.182,-86.1603,-130.019,-137.831 0|0:144:78,9,40,4,4:78:3050:9,40,4,4:350,1541,154,161:-101.935,-96.6513,-341.451,0,-218.742,-235.464,-112.77,-331.516,-234.861,-359.075,-112.145,-330.891,-234.236,-347.01,-358.45 dDocent_Contig_13522 15 . T G 3570.15 . AB=0.0375;ABP=300.285;AC=0;AF=0;AN=6;AO=6;CIGAR=1X1M1X4M;DP=259;DPB=259;DPRA=0;EPP=16.0391;EPPR=79.0118;GTI=0;LEN=1;MEANALT=6;MQM=60;MQMR=56.9429;NS=3;NUMALT=5;ODDS=0;PAIRED=1;PAIREDR=0.857143;PAO=0;PQA=0;PQR=0;PRO=0;QA=233;QR=1375;RO=35;RPL=0;RPP=16.0391;RPPR=79.0118;RPR=6;RUN=1;SAF=6;SAP=16.0391;SAR=0;SRF=35;SRP=79.0118;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|0:74:3,1,6,11,31,22:3:121:1,6,11,31,22:40,229,350,882,866:-124.914,-122.521,-130.144,-113.481,-118.109,-119.599,-100.427,-105.054,-96.0156,-105.039,-63.3671,-67.9928,-58.9622,-45.9138,-61.9572,-54.5411,-59.1702,-50.1288,-37.0689,0,-55.8451 0|0:99:11,0,0,3,39,44:11:433:0,0,3,39,44:0,0,90,864,1685:-155.678,-158.989,-194.62,-158.989,-194.62,-194.62,-152.605,-188.237,-188.237,-187.334,-102.67,-138.294,-138.294,-131.915,-126.554,-20.6252,-56.2832,-56.2832,-49.8968,0,-43.0379 0|0:86:21,5,1,0,22,28:21:821:5,1,0,22,28:193,40,0,632,1075:-81.9454,-72.4136,-137.929,-86.2446,-137.412,-152.962,-88.2671,-139.434,-153.263,-155.286,-43.7388,-94.8982,-108.726,-110.748,-104.125,0,-51.1821,-65.014,-67.0364,-22.5141,-58.6076 dDocent_Contig_13523 7 . A T 158.898 . AB=0.28;ABP=13.5202;AC=1;AF=0.166667;AN=6;AO=8;CIGAR=1X;DP=46;DPB=46;DPRA=11;EPP=20.3821;EPPR=85.5263;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=312;QR=1450;RO=38;RPL=0;RPP=20.3821;RPPR=85.5263;RPR=8;RUN=1;SAF=8;SAP=20.3821;SAR=0;SRF=38;SRP=85.5263;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:25:18,7:18:681:7:273:-17.4123,0,-54.0948 0/0:19:18,1:18:691:1:39:0,-1.82301,-58.6275 0/0:2:2,0:2:78:0:0:0,-0.60206,-7.40347 dDocent_Contig_13524 24 . A C 408.492 . AB=0.320755;ABP=17.8009;AC=3;AF=0.5;AN=6;AO=17;CIGAR=1X;DP=53;DPB=53;DPRA=0;EPP=39.9253;EPPR=81.1833;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=680;QR=1428;RO=36;RPL=0;RPP=39.9253;RPPR=81.1833;RPR=17;RUN=1;SAF=17;SAP=39.9253;SAR=0;SRF=36;SRP=81.1833;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:15:12,3:12:483:3:118:-6.48727,0,-39.3038 0/1:24:17,7:17:676:7:280:-18.3465,0,-53.9451 0/1:14:7,7:7:269:7:282:-21.5383,0,-20.3587 dDocent_Contig_13525 8 . G A 108.156 . AB=0.2;ABP=22.5536;AC=4;AF=0.666667;AN=6;AO=6;CIGAR=1X2M1X;DP=26;DPB=26;DPRA=0;EPP=16.0391;EPPR=46.4397;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=230;QR=784;RO=20;RPL=0;RPP=16.0391;RPPR=46.4397;RPR=6;RUN=1;SAF=6;SAP=16.0391;SAR=0;SRF=20;SRP=46.4397;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|1:10:7,3:7:275:3:112:-7.4357,0,-22.109 1|1:1:0,1:0:0:1:40:-3.99568,-0.30103,0 0|1:15:13,2:13:509:2:78:-2.88802,0,-41.6429 dDocent_Contig_13526 39 . C T 168.689 . AB=0.227273;ABP=17.2236;AC=4;AF=0.666667;AN=6;AO=7;CIGAR=1X;DP=24;DPB=24;DPRA=0;EPP=18.2106;EPPR=39.9253;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=282;QR=679;RO=17;RPL=0;RPP=18.2106;RPPR=39.9253;RPR=7;RUN=1;SAF=7;SAP=18.2106;SAR=0;SRF=17;SRP=39.9253;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:14:10,4:10:398:4:164:-10.9355,0,-31.9623 1/1:2:0,2:0:0:2:78:-7.4033,-0.60206,0 0/1:8:7,1:7:281:1:40:-1.58744,0,-23.2534 dDocent_Contig_13528 23 . A G 90.0195 . AB=0.25;ABP=13.8677;AC=1;AF=0.166667;AN=6;AO=5;CIGAR=1M1I6M1X3M;DP=31;DPB=31.4545;DPRA=3.63636;EPP=13.8677;EPPR=59.4686;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=0;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=180;QR=1010;RO=26;RPL=0;RPP=13.8677;RPPR=59.4686;RPR=5;RUN=1;SAF=5;SAP=13.8677;SAR=0;SRF=26;SRP=59.4686;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|1:20:15,5:15:581:5:180:-10.5246,0,-46.6083 0|0:3:3,0:3:121:0:0:0,-0.90309,-11.2802 0|0:8:8,0:8:308:0:0:0,-2.40824,-28.0804 dDocent_Contig_13529 20 . T C 706.692 . AB=0.29;ABP=41.3151;AC=3;AF=0.5;AN=6;AO=29;CIGAR=1X;DP=100;DPB=100;DPRA=0;EPP=65.983;EPPR=157.185;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=1169;QR=2842;RO=71;RPL=0;RPP=65.983;RPPR=157.185;RPR=29;RUN=1;SAF=29;SAP=65.983;SAR=0;SRF=71;SRP=157.185;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:80:60,20:60:2396:20:805:-48.6837,0,-191.708 0/1:6:2,4:2:81:4:163:-13.2522,0,-5.87955 0/1:14:9,5:9:365:5:201:-14.2561,0,-29.0006 dDocent_Contig_13530 12 . T C 1577.58 . AB=0.58427;ABP=8.49998;AC=3;AF=0.5;AN=6;AO=52;CIGAR=1X;DP=89;DPB=89;DPRA=0;EPP=115.927;EPPR=83.3548;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=2101;QR=1480;RO=37;RPL=0;RPP=115.927;RPPR=83.3548;RPR=52;RUN=1;SAF=52;SAP=115.927;SAR=0;SRF=37;SRP=83.3548;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:52:14,38:14:563:38:1537:-122.912,0,-35.3584 0/1:9:5,4:5:204:4:164:-12.4406,0,-16.0348 0/1:28:18,10:18:713:10:400:-27.9277,0,-56.0646 dDocent_Contig_13531 138 . A T 153.955 . AB=0.411765;ABP=4.1599;AC=2;AF=0.333333;AN=6;AO=7;CIGAR=1X;DP=25;DPB=25;DPRA=1.0625;EPP=18.2106;EPPR=42.0968;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=1.73472e-18;PAIRED=0;PAIREDR=0.944444;PAO=0;PQA=0;PQR=0;PRO=0;QA=259;QR=651;RO=18;RPL=0;RPP=18.2106;RPPR=42.0968;RPR=7;RUN=1;SAF=0;SAP=18.2106;SAR=7;SRF=0;SRP=42.0968;SRR=18;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:8:8,0:8:288:0:0:0,-2.40824,-26.2658 0/1:6:3,3:3:105:3:111:-8.54774,0,-7.98926 0/1:11:7,4:7:258:4:148:-10.3706,0,-20.2638 dDocent_Contig_13532 22 . C G 466.825 . AB=0.382979;ABP=8.60069;AC=3;AF=0.5;AN=6;AO=18;CIGAR=1X;DP=47;DPB=47;DPRA=0;EPP=42.0968;EPPR=63.8115;GTI=0;LEN=1;MEANALT=1.33333;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=0.928571;PAO=0;PQA=0;PQR=0;PRO=0;QA=726;QR=1126;RO=28;RPL=0;RPP=42.0968;RPPR=63.8115;RPR=18;RUN=1;SAF=18;SAP=42.0968;SAR=0;SRF=28;SRP=63.8115;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:18:6,11:6:244:11:448:-35.1492,0,-16.8123 0/1:17:13,4:13:518:4:158:-9.48115,0,-41.8481 0/1:12:9,3:9:364:3:120:-7.57495,0,-29.5118 dDocent_Contig_13533 18 . T C 12841.2 . AB=0.839506;ABP=84.1054;AC=5;AF=0.833333;AN=6;AO=378;CIGAR=1X;DP=403;DPB=403;DPRA=0;EPP=823.827;EPPR=57.2971;GTI=0;LEN=1;MEANALT=1;MQM=59.537;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=15059;QR=1004;RO=25;RPL=0;RPP=823.827;RPPR=57.2971;RPR=378;RUN=1;SAF=378;SAP=823.827;SAR=0;SRF=25;SRP=57.2971;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 1/1:191:9,182:9:361:182:7223:-616.534,-24.6438,0 0/1:81:13,68:13:522:68:2716:-219.881,0,-22.943 1/1:131:3,128:3:121:128:5120:-449.232,-28.1547,0 dDocent_Contig_13534 76 . T C 73.118 . AB=0.4;ABP=3.87889;AC=1;AF=0.25;AN=4;AO=4;CIGAR=1X;DP=20;DPB=20;DPRA=1;EPP=11.6962;EPPR=37.7539;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=2;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=130;QR=553;RO=16;RPL=0;RPP=11.6962;RPPR=37.7539;RPR=4;RUN=1;SAF=0;SAP=11.6962;SAR=4;SRF=0;SRP=37.7539;SRR=16;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:10:6,4:6:207:4:130:-9.01077,0,-15.9578 0/0:10:10,0:10:346:0:0:0,-3.0103,-31.4746 ./.:.:.:.:.:.:.:. dDocent_Contig_13535 158 . T A 72.9665 . AB=0;ABP=0;AC=2;AF=0.333333;AN=6;AO=4;CIGAR=2X;DP=33;DPB=33;DPRA=0;EPP=11.6962;EPPR=65.983;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=0.75;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=138;QR=1056;RO=29;RPL=4;RPP=11.6962;RPPR=65.983;RPR=0;RUN=1;SAF=0;SAP=11.6962;SAR=4;SRF=0;SRP=65.983;SRR=29;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|0:17:16,1:16:579:1:38:0,-1.32024,-48.6444 1|1:2:0,2:0:0:2:75:-7.1201,-0.60206,0 0|0:14:13,1:13:477:1:25:0,-1.71456,-40.7717 dDocent_Contig_13536 12 . T A 170.744 . AB=0.411765;ABP=4.1599;AC=1;AF=0.166667;AN=6;AO=8;CIGAR=1X3M1X;DP=36;DPB=36;DPRA=5.5;EPP=20.3821;EPPR=59.4686;GTI=0;LEN=1;MEANALT=1.5;MQM=41.75;MQMR=60;NS=3;NUMALT=2;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=316;QR=1032;RO=26;RPL=0;RPP=20.3821;RPPR=59.4686;RPR=8;RUN=1;SAF=8;SAP=20.3821;SAR=0;SRF=26;SRP=59.4686;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|1:17:8,7,2:8:315:7,2:276,77:-18.5967,0,-23.8313,-15.0978,-20.0366,-40.4232 0|0:3:3,0,0:3:120:0,0:0,0:0,-0.90309,-11.1879,-0.90309,-11.1879,-11.1879 0|0:16:15,1,0:15:597:1,0:40,0:0,-0.833432,-50.088,-4.51545,-50.3891,-53.6728 dDocent_Contig_13538 7 . A G 30.923 . AB=0;ABP=0;AC=0;AF=0;AN=6;AO=2;CIGAR=1X2M1X2M1X;DP=46;DPB=46;DPRA=0;EPP=7.35324;EPPR=76.8404;GTI=0;LEN=1;MEANALT=4;MQM=34.5;MQMR=60;NS=3;NUMALT=3;ODDS=0;PAIRED=0;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=80;QR=1326;RO=34;RPL=0;RPP=7.35324;RPPR=76.8404;RPR=2;RUN=1;SAF=2;SAP=7.35324;SAR=0;SRF=34;SRP=76.8404;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|0:27:20,2,1,3:20:776:2,1,3:80,38,94:0,-0.630849,-63.8835,-2.88806,-61.3683,-66.4354,-1.38575,-59.8147,-62.0642,-64.2776 0|0:9:8,0,0,1:8:316:0,0,1:0,0,35:-0.789359,-3.1976,-29.2412,-3.1976,-29.2412,-29.2412,0,-26.3984,-26.3984,-26.0974 0|0:10:6,0,2,2:6:234:0,2,2:0,80,80:-4.78398,-6.59016,-25.819,0,-19.2274,-18.6253,0,-19.2274,-12.6347,-18.6253 dDocent_Contig_13539 11 . A G 166.025 . AB=0.545455;ABP=3.20771;AC=1;AF=0.25;AN=4;AO=6;CIGAR=1M1D1M1X;DP=24;DPB=22.5;DPRA=0.846154;EPP=16.0391;EPPR=42.0968;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=2;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=236;QR=693;RO=18;RPL=0;RPP=16.0391;RPPR=42.0968;RPR=6;RUN=1;SAF=6;SAP=16.0391;SAR=0;SRF=18;SRP=42.0968;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|1:11:5,6:5:195:6:236:-18.3015,0,-14.6127 .:.:.:.:.:.:.:. 0|0:13:13,0:13:498:0:0:0,-3.91339,-45.1651 dDocent_Contig_13541 8 . G A 90.8526 . AB=0.217391;ABP=18.9659;AC=1;AF=0.166667;AN=6;AO=9;CIGAR=1X;DP=90;DPB=90;DPRA=3.25;EPP=22.5536;EPPR=178.9;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=350;QR=3109;RO=81;RPL=0;RPP=22.5536;RPPR=178.9;RPR=9;RUN=1;SAF=9;SAP=22.5536;SAR=0;SRF=81;SRP=178.9;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:55:51,4:51:1958:4:156:0,-2.13936,-162.044 0/0:12:12,0:12:462:0:0:0,-3.61236,-41.9306 0/1:23:18,5:18:689:5:194:-10.9092,0,-55.419 dDocent_Contig_13542 29 . T A 41.4962 . AB=0.333333;ABP=4.45795;AC=1;AF=0.166667;AN=6;AO=2;CIGAR=1X;DP=53;DPB=53;DPRA=0.255319;EPP=7.35324;EPPR=113.755;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=0.980392;PAO=0;PQA=0;PQR=0;PRO=0;QA=82;QR=2052;RO=51;RPL=0;RPP=7.35324;RPPR=113.755;RPR=2;RUN=1;SAF=2;SAP=7.35324;SAR=0;SRF=51;SRP=113.755;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:34:34,0:34:1373:0:0:0,-10.235,-123.826 0/1:6:4,2:4:159:2:82:-5.9735,0,-12.8856 0/0:13:13,0:13:520:0:0:0,-3.91339,-47.1457 dDocent_Contig_13543 7 . A G 114.937 . AB=0.166667;ABP=31.9633;AC=2;AF=0.333334;AN=6;AO=5;CIGAR=1X1M;DP=30;DPB=30;DPRA=0;EPP=13.8677;EPPR=46.4397;GTI=0;LEN=1;MEANALT=1.66667;MQM=60;MQMR=60;NS=3;NUMALT=3;ODDS=0;PAIRED=0.8;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=167;QR=760;RO=20;RPL=0;RPP=13.8677;RPPR=46.4397;RPR=5;RUN=1;SAF=5;SAP=13.8677;SAR=0;SRF=20;SRP=46.4397;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|0:13:9,0,3,1:9:344:0,3,1:0,117,34:-6.94569,-9.65496,-37.8849,0,-28.2645,-27.3614,-6.90941,-35.1303,-25.5107,-34.8292 0|1:11:8,2,0,1:8:301:2,0,1:66,0,37:-2.90037,0,-24.0664,-5.30861,-24.6685,-29.9954,-2.26829,-21.6421,-26.9682,-26.6671 0|1:6:3,0,0,3:3:115:0,0,3:0,0,96:-7.1519,-8.05499,-17.5253,-8.05499,-17.5253,-17.5253,0,-9.8218,-9.8218,-8.91871 dDocent_Contig_13544 12 . C T 218.665 . AB=0.315789;ABP=8.61041;AC=0;AF=0;AN=6;AO=6;CIGAR=1X2M1X1M1X3M1X1M1X;DP=71;DPB=71;DPRA=0;EPP=16.0391;EPPR=105.07;GTI=0;LEN=1;MEANALT=2;MQM=15.1667;MQMR=60;NS=3;NUMALT=3;ODDS=0;PAIRED=0;PAIREDR=0.659574;PAO=0;PQA=0;PQR=0;PRO=0;QA=233;QR=1855;RO=47;RPL=0;RPP=16.0391;RPPR=105.07;RPR=6;RUN=1;SAF=6;SAP=16.0391;SAR=0;SRF=47;SRP=105.07;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|0:24:20,0,0,4:20:789:0,0,4:0,0,155:-7.10042,-13.121,-78.0423,-13.121,-78.0423,-78.0423,0,-65.3096,-65.3096,-64.1055 0|0:28:18,0,4,5:18:709:0,4,5:0,162,191:-10.0792,-15.4978,-73.8282,-2.13031,-60.4679,-59.2638,0,-58.3209,-44.9607,-56.8158 0|0:19:9,6,0,4:9:357:6,0,4:233,0,156:-10.2087,-6.68954,-34.2743,-12.918,-36.0805,-42.3752,0,-23.2598,-29.5333,-28.3291 dDocent_Contig_13546 156 . T C 65.9427 . AB=0.375;ABP=4.09604;AC=1;AF=0.25;AN=4;AO=3;CIGAR=1X;DP=19;DPB=19;DPRA=0.727273;EPP=9.52472;EPPR=37.7539;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=2;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=118;QR=634;RO=16;RPL=0;RPP=9.52472;RPPR=37.7539;RPR=3;RUN=1;SAF=0;SAP=9.52472;SAR=3;SRF=0;SRP=37.7539;SRR=16;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:11:11,0:11:433:0:0:0,-3.31133,-39.3232 ./.:.:.:.:.:.:.:. 0/1:8:5,3:5:201:3:118:-8.59427,0,-16.0629 dDocent_Contig_13548 20 . T A 1974.86 . AB=0.605505;ABP=13.5489;AC=3;AF=0.5;AN=6;AO=66;CIGAR=1X;DP=109;DPB=109;DPRA=0;EPP=146.327;EPPR=87.8997;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=0.953488;PAO=0;PQA=0;PQR=0;PRO=0;QA=2610;QR=1720;RO=43;RPL=0;RPP=146.327;RPPR=96.3836;RPR=66;RUN=1;SAF=66;SAP=146.327;SAR=0;SRF=42;SRP=87.8997;SRR=1;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:55:13,42:13:521:42:1658:-132.884,0,-30.6792 0/1:19:6,13:6:239:13:511:-40.616,0,-16.1643 0/1:35:24,11:24:960:11:441:-29.5087,0,-76.1598 dDocent_Contig_13549 8 . G T 553.055 . AB=0.254902;ABP=56.2327;AC=3;AF=0.5;AN=6;AO=26;CIGAR=1X;DP=102;DPB=102;DPRA=0;EPP=59.4686;EPPR=168.042;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=1005;QR=2876;RO=76;RPL=0;RPP=59.4686;RPPR=168.042;RPR=26;RUN=1;SAF=26;SAP=59.4686;SAR=0;SRF=76;SRP=168.042;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:44:36,8:36:1344:8:310:-15.0183,0,-107.995 0/1:22:9,13:9:344:13:502:-38.9059,0,-24.6947 0/1:36:31,5:31:1188:5:193:-6.90428,0,-96.3813 dDocent_Contig_13550 10 . C T 684.277 . AB=0.431034;ABP=5.40641;AC=2;AF=0.333333;AN=6;AO=25;CIGAR=1X;DP=63;DPB=63;DPRA=5.8;EPP=57.2971;EPPR=85.5263;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=0.947368;PAO=0;PQA=0;PQR=0;PRO=0;QA=986;QR=1497;RO=38;RPL=0;RPP=57.2971;RPPR=85.5263;RPR=25;RUN=1;SAF=25;SAP=57.2971;SAR=0;SRF=38;SRP=85.5263;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:41:21,20:21:831:20:802:-60.1539,0,-62.7619 0/0:5:5,0:5:192:0:0:0,-1.50515,-17.6489 0/1:17:12,5:12:474:5:184:-11.7967,0,-37.8912 dDocent_Contig_13551 36 . T A 65.7072 . AB=0.333333;ABP=5.18177;AC=1;AF=0.25;AN=4;AO=5;CIGAR=3X;DP=52;DPB=52;DPRA=0;EPP=13.8677;EPPR=105.07;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=2;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=200;QR=1881;RO=47;RPL=0;RPP=13.8677;RPPR=105.07;RPR=5;RUN=1;SAF=5;SAP=13.8677;SAR=0;SRF=47;SRP=105.07;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|0:43:41,2:41:1640:2:79:0,-5.44666,-140.338 .:.:.:.:.:.:.:. 0|1:9:6,3:6:241:3:121:-8.57072,0,-19.3576 dDocent_Contig_13552 22 . A C 89.2336 . AB=0.157895;ABP=41.6397;AC=1;AF=0.166667;AN=6;AO=6;CIGAR=1X3M1X;DP=78;DPB=78;DPRA=1.9;EPP=16.0391;EPPR=159.356;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=1.73472e-18;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=239;QR=2852;RO=72;RPL=0;RPP=16.0391;RPPR=159.356;RPR=6;RUN=1;SAF=6;SAP=16.0391;SAR=0;SRF=72;SRP=159.356;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|1:38:32,6:32:1261:6:239:-10.4462,0,-102.329 0|0:18:18,0:18:715:0:0:0,-5.41854,-64.6788 0|0:22:22,0:22:876:0:0:0,-6.62266,-79.1535 dDocent_Contig_13553 26 . G C 59.688 . AB=0.173913;ABP=24.253;AC=2;AF=0.333333;AN=6;AO=5;CIGAR=1X;DP=37;DPB=37;DPRA=0;EPP=13.8677;EPPR=70.3259;GTI=0;LEN=1;MEANALT=1.33333;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=0.774194;PAO=0;PQA=0;PQR=0;PRO=0;QA=201;QR=1177;RO=31;RPL=0;RPP=13.8677;RPPR=70.3259;RPR=5;RUN=1;SAF=5;SAP=13.8677;SAR=0;SRF=31;SRP=70.3259;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:12:9,3:9:341:3:119:-7.48214,0,-27.4298 0/0:14:12,1:12:464:1:41:0,-0.228279,-38.0177 0/1:11:10,1:10:372:1:41:-0.783237,0,-30.508 dDocent_Contig_13555 98 . N T 253.58 . AB=0;ABP=0;AC=2;AF=1;AN=2;AO=8;CIGAR=1X;DP=8;DPB=8;DPRA=0;EPP=20.3821;EPPR=0;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=0;NS=1;NUMALT=1;ODDS=10.1503;PAIRED=1;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=278;QR=0;RO=0;RPL=8;RPP=20.3821;RPPR=0;RPR=0;RUN=1;SAF=8;SAP=20.3821;SAR=0;SRF=0;SRP=0;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 1/1:8:0,8:0:0:8:278:-25.3579,-2.40824,0 ./.:.:.:.:.:.:.:. ./.:.:.:.:.:.:.:. dDocent_Contig_13556 12 . A G 2592.52 . AB=0.336117;ABP=114.753;AC=3;AF=0.5;AN=6;AO=161;CIGAR=2M1X1M;DP=479;DPB=479;DPRA=0;EPP=352.617;EPPR=580.622;GTI=0;LEN=1;MEANALT=6;MQM=32.6708;MQMR=34.9737;NS=3;NUMALT=2;ODDS=0;PAIRED=0.832298;PAIREDR=0.808271;PAO=0;PQA=0;PQR=0;PRO=0;QA=4840;QR=10513;RO=266;RPL=0;RPP=352.617;RPPR=580.622;RPR=161;RUN=1;SAF=161;SAP=352.617;SAR=0;SRF=266;SRP=580.622;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|1:235:144,12,66:144:5693:12,66:474,2069:-103.153,-117.338,-444.293,0,-301.421,-310.713 0|1:92:42,1,45:42:1651:1,45:39,1508:-96.9717,-107.262,-207.831,0,-98.5745,-87.3809 0|1:152:80,14,50:80:3169:14,50:553,1263:-64.6495,-57.9238,-243.767,0,-159.258,-175.003 dDocent_Contig_13558 11 . T C 108.484 . AB=0.153846;ABP=57.1301;AC=2;AF=0.333333;AN=6;AO=9;CIGAR=1X;DP=78;DPB=78;DPRA=0;EPP=22.5536;EPPR=152.842;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=365;QR=2773;RO=69;RPL=0;RPP=22.5536;RPPR=152.842;RPR=9;RUN=1;SAF=9;SAP=22.5536;SAR=0;SRF=69;SRP=152.842;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:25:21,4:21:831:4:164:-7.62415,0,-67.574 0/1:27:23,4:23:928:4:161:-6.74709,0,-75.6959 0/0:26:25,1:25:1014:1:40:0,-3.8311,-87.5582 dDocent_Contig_13559 24 . C G 166.881 . AB=0.296296;ABP=12.7417;AC=3;AF=0.5;AN=6;AO=8;CIGAR=1X;DP=27;DPB=27;DPRA=0;EPP=20.3821;EPPR=44.2683;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=324;QR=759;RO=19;RPL=0;RPP=20.3821;RPPR=44.2683;RPR=8;RUN=1;SAF=8;SAP=20.3821;SAR=0;SRF=19;SRP=44.2683;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:12:9,3:9:366:3:122:-7.76013,0,-29.6926 0/1:5:2,3:2:79:3:121:-9.77505,0,-5.99209 0/1:10:8,2:8:314:2:81:-4.67543,0,-25.6099 dDocent_Contig_13560 11 . T A 3269.09 . AB=0.722222;ABP=64.7766;AC=3;AF=0.5;AN=6;AO=104;CIGAR=1X2M1X1M1X;DP=144;DPB=144;DPRA=0;EPP=228.843;EPPR=74.6689;GTI=0;LEN=1;MEANALT=2;MQM=60;MQMR=60;NS=3;NUMALT=2;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=4152;QR=1309;RO=33;RPL=0;RPP=228.843;RPPR=74.6689;RPR=104;RUN=1;SAF=104;SAP=228.843;SAR=0;SRF=33;SRP=74.6689;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|1:86:20,62,3:20:797:62,3:2467,119:-197.117,0,-46.9751,-193.342,-55.8438,-258.069 0|1:5:3,2,0:3:118:2,0:80,0:-6.08664,0,-9.49757,-6.98973,-10.0996,-16.6924 0|1:53:10,40,3:10:394:40,3:1605,123:-129.228,0,-20.3603,-122.086,-22.2456,-153.595 dDocent_Contig_13562 34 . G A 122.779 . AB=0.8;ABP=6.91895;AC=1;AF=0.166667;AN=6;AO=4;CIGAR=1X;DP=37;DPB=37;DPRA=0.3125;EPP=11.6962;EPPR=74.6689;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=163;QR=1299;RO=33;RPL=0;RPP=11.6962;RPPR=74.6689;RPR=4;RUN=1;SAF=4;SAP=11.6962;SAR=0;SRF=33;SRP=74.6689;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:22:22,0:22:870:0:0:0,-6.62266,-78.609 0/0:10:10,0:10:399:0:0:0,-3.0103,-36.2674 0/1:5:1,4:1:30:4:163:-13.5533,0,-1.49442 dDocent_Contig_13563 14 . G A 1116.18 . AB=0.157895;ABP=80.269;AC=5;AF=0.833333;AN=6;AO=12;CIGAR=3M1X;DP=76;DPB=76;DPRA=0;EPP=29.068;EPPR=37.7539;GTI=0;LEN=1;MEANALT=3;MQM=52.75;MQMR=60;NS=3;NUMALT=3;ODDS=0;PAIRED=0.75;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=474;QR=633;RO=16;RPL=0;RPP=29.068;RPPR=37.7539;RPR=12;RUN=1;SAF=12;SAP=29.068;SAR=0;SRF=16;SRP=37.7539;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 1|1:39:7,18,9,5:7:277:18,9,5:708,363,198:-62.5621,-7.13073,-24.5081,-34.7429,0,-54.832,-48.5971,-13.8561,-41.4686,-69.8892 0|1:17:7,3,4,3:7:278:3,4,3:120,161,121:-11.1719,-3.38862,-25.3773,0,-13.006,-21.6906,-4.591,-17.5879,-14.2027,-26.5702 1|1:20:2,12,2,4:2:78:12,2,4:469,80,155:-43.4067,-5.60335,-8.40543,-37.4168,-5.42148,-43.227,-31.9826,0,-31.8026,-37.1899 dDocent_Contig_13565 14 . A G 237.238 . AB=0.322581;ABP=11.486;AC=2;AF=0.333333;AN=6;AO=10;CIGAR=1X;DP=45;DPB=45;DPRA=1.10714;EPP=24.725;EPPR=79.0118;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=398;QR=1360;RO=35;RPL=0;RPP=24.725;RPPR=79.0118;RPR=10;RUN=1;SAF=10;SAP=24.725;SAR=0;SRF=35;SRP=79.0118;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:24:18,6:18:706:6:235:-14.2955,0,-56.6434 0/0:14:14,0:14:539:0:0:0,-4.21442,-48.8489 0/1:7:3,4:3:115:4:163:-12.9512,0,-8.61517 dDocent_Contig_13567 18 . C G 144.693 . AB=0.0555556;ABP=64.7766;AC=2;AF=0.333333;AN=6;AO=2;CIGAR=1X2M1X8M1X3M;DP=54;DPB=54.5625;DPRA=4.5;EPP=7.35324;EPPR=92.0407;GTI=0;LEN=1;MEANALT=3;MQM=60;MQMR=60;NS=3;NUMALT=2;ODDS=0;PAIRED=0;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=80;QR=1592;RO=41;RPL=0;RPP=7.35324;RPPR=92.0407;RPR=2;RUN=1;SAF=2;SAP=7.35324;SAR=0;SRF=41;SRP=92.0407;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|1:36:26,7,2:26:1006:7,2:266,80:-13.9769,0,-80.5185,-15.2095,-76.0349,-97.2422 0|1:10:8,2,0:8:309:2,0:74,0:-4.01384,0,-25.1606,-6.42208,-25.7627,-31.8118 0|0:8:7,0,0:7:277:0,0:0,0:0,-2.10721,-24.918,-2.10721,-24.918,-24.918 dDocent_Contig_13568 23 . G A 1216 . AB=0.5;ABP=3.0103;AC=4;AF=0.666667;AN=6;AO=41;CIGAR=1X;DP=75;DPB=75;DPRA=0;EPP=92.0407;EPPR=76.8404;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=1601;QR=1314;RO=34;RPL=0;RPP=92.0407;RPPR=76.8404;RPR=41;RUN=1;SAF=41;SAP=92.0407;SAR=0;SRF=34;SRP=76.8404;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:60:27,33:27:1056:33:1282:-97.5918,0,-77.2812 1/1:7:0,7:0:0:7:279:-25.4788,-2.10721,0 0/1:8:7,1:7:258:1:40:-1.58744,0,-21.1625 dDocent_Contig_13569 111 . C T 103.122 . AB=0.25;ABP=16.0391;AC=1;AF=0.166667;AN=6;AO=6;CIGAR=1X;DP=47;DPB=47;DPRA=2.08696;EPP=16.0391;EPPR=92.0407;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=208;QR=1420;RO=41;RPL=0;RPP=16.0391;RPPR=92.0407;RPR=6;RUN=1;SAF=0;SAP=16.0391;SAR=6;SRF=0;SRP=92.0407;SRR=41;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:24:18,6:18:626:6:208:-11.8349,0,-49.4417 0/0:3:3,0:3:104:0:0:0,-0.90309,-9.70309 0/0:20:20,0:20:690:0:0:0,-6.0206,-62.4219 dDocent_Contig_13571 9 . C A 7258.44 . AB=0.761468;ABP=67.7361;AC=4;AF=0.666667;AN=6;AO=236;CIGAR=1X;DP=276;DPB=276;DPRA=0;EPP=515.478;EPPR=85.5263;GTI=0;LEN=1;MEANALT=1.66667;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=1.38778e-17;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=8959;QR=1461;RO=38;RPL=0;RPP=515.478;RPPR=85.5263;RPR=236;RUN=1;SAF=236;SAP=515.478;SAR=0;SRF=38;SRP=85.5263;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 1/1:167:13,153:13:491:153:5861:-482.917,-5.82488,0 0/1:22:3,19:3:115:19:699:-56.6108,0,-4.10237 0/1:87:22,64:22:855:64:2399:-189.838,0,-50.9939 dDocent_Contig_13572 31 . A T 72.6653 . AB=0.2;ABP=22.5536;AC=2;AF=0.333333;AN=6;AO=5;CIGAR=1X;DP=29;DPB=29;DPRA=3.125;EPP=13.8677;EPPR=55.1256;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=0.6;PAIREDR=0.791667;PAO=0;PQA=0;PQR=0;PRO=0;QA=195;QR=969;RO=24;RPL=0;RPP=13.8677;RPPR=55.1256;RPR=5;RUN=1;SAF=5;SAP=13.8677;SAR=0;SRF=24;SRP=55.1256;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:17:14,3:14:567:3:114:-5.51171,0,-46.2539 0/0:4:4,0:4:162:0:0:0,-1.20412,-14.967 0/1:8:6,2:6:240:2:81:-5.27749,0,-19.5663 dDocent_Contig_13573 36 . C A 384.988 . AB=0.165468;ABP=138.126;AC=2;AF=0.333333;AN=6;AO=26;CIGAR=1X;DP=235;DPB=235;DPRA=0;EPP=59.4686;EPPR=448.162;GTI=0;LEN=1;MEANALT=1.33333;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=1.38778e-17;PAIRED=1;PAIREDR=0.980488;PAO=0;PQA=0;PQR=0;PRO=0;QA=1044;QR=8173;RO=205;RPL=0;RPP=59.4686;RPPR=448.162;RPR=26;RUN=1;SAF=26;SAP=59.4686;SAR=0;SRF=205;SRP=448.162;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:101:86,15:86:3443:15:605:-24.3838,0,-279.508 0/1:38:30,8:30:1183:8:319:-17.6379,0,-95.3014 0/0:96:89,3:89:3547:3:120:0,-16.907,-308.074 dDocent_Contig_13574 11 . C T 1463.88 . AB=0.175439;ABP=524.545;AC=3;AF=0.5;AN=6;AO=100;CIGAR=1X;DP=570;DPB=570;DPRA=0;EPP=220.158;EPPR=1023.6;GTI=0;LEN=1;MEANALT=1;MQM=39.12;MQMR=39.9468;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=3956;QR=18530;RO=470;RPL=0;RPP=220.158;RPPR=1023.6;RPR=100;RUN=1;SAF=100;SAP=220.158;SAR=0;SRF=470;SRP=1023.6;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:168:128,40:128:5013:40:1587:-80.5544,0,-367.807 0/1:203:167,36:167:6592:36:1423:-51.9966,0,-486.739 0/1:199:175,24:175:6925:24:946:-19.3601,0,-516.782 dDocent_Contig_13576 33 . G A 93.305 . AB=0.2;ABP=22.5536;AC=1;AF=0.166667;AN=6;AO=5;CIGAR=1X;DP=40;DPB=40;DPRA=3.33333;EPP=13.8677;EPPR=79.0118;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=200;QR=1390;RO=35;RPL=0;RPP=13.8677;RPPR=79.0118;RPR=5;RUN=1;SAF=5;SAP=13.8677;SAR=0;SRF=35;SRP=79.0118;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:25:20,5:20:785:5:200:-10.8533,0,-63.4409 0/0:11:11,0:11:444:0:0:0,-3.31133,-40.316 0/0:4:4,0:4:161:0:0:0,-1.20412,-14.8755 dDocent_Contig_13577 112 . T A 31.8697 . AB=0;ABP=0;AC=2;AF=0.333333;AN=6;AO=3;CIGAR=1X1M1I2M;DP=21;DPB=21.75;DPRA=0.333333;EPP=9.52472;EPPR=42.0968;GTI=0;LEN=1;MEANALT=1;MQM=13.6667;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=0;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=41;QR=616;RO=18;RPL=0;RPP=9.52472;RPPR=42.0968;RPR=3;RUN=1;SAF=0;SAP=9.52472;SAR=3;SRF=0;SRP=42.0968;SRR=18;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|0:13:13,0:13:441:0:0:0,-3.91339,-40.0159 0|0:5:5,0:5:175:0:0:0,-1.50515,-16.0937 1|1:3:0,3:0:0:3:41:-3.01037,-0.90309,0 dDocent_Contig_13578 144 . G A 64.6721 . AB=0.6;ABP=3.44459;AC=1;AF=0.166667;AN=6;AO=3;CIGAR=1X3M2I3M;DP=37;DPB=37.8571;DPRA=0.3125;EPP=9.52472;EPPR=76.8404;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=105;QR=1194;RO=34;RPL=0;RPP=9.52472;RPPR=76.8404;RPR=3;RUN=1;SAF=0;SAP=9.52472;SAR=3;SRF=0;SRP=76.8404;SRR=34;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|0:18:18,0:18:614:0:0:0,-5.41854,-55.5807 0|0:14:14,0:14:510:0:0:0,-4.21442,-46.235 0|1:5:2,3:2:70:3:105:-8.29101,0,-5.14225 dDocent_Contig_13579 134 . G T 39.6901 . AB=0.176471;ABP=18.4661;AC=1;AF=0.166667;AN=6;AO=4;CIGAR=1X;DP=64;DPB=64;DPRA=1.78571;EPP=11.6962;EPPR=133.299;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=156;QR=2240;RO=60;RPL=0;RPP=11.6962;RPPR=133.299;RPR=4;RUN=1;SAF=0;SAP=11.6962;SAR=4;SRF=0;SRP=133.299;SRR=60;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:33:32,1:32:1193:1:39:0,-6.03743,-103.763 0/0:14:14,0:14:508:0:0:0,-4.21442,-46.0477 0/1:17:14,3:14:539:3:117:-5.79287,0,-43.7376 dDocent_Contig_13580 37 . C T 129.256 . AB=0.122137;ABP=165.473;AC=2;AF=0.333333;AN=6;AO=16;CIGAR=1X;DP=151;DPB=151;DPRA=3.275;EPP=37.7539;EPPR=296.159;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=613;QR=5316;RO=135;RPL=0;RPP=37.7539;RPPR=296.159;RPR=16;RUN=1;SAF=16;SAP=37.7539;SAR=0;SRF=135;SRP=296.159;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:122:110,12:110:4337:12:464:-5.38507,0,-353.556 0/0:20:20,0:20:793:0:0:0,-6.0206,-71.6863 0/1:9:5,4:5:186:4:149:-11.0634,0,-14.3914 dDocent_Contig_13581 21 . A G 67.921 . AB=0.428571;ABP=3.32051;AC=1;AF=0.166667;AN=6;AO=3;CIGAR=1X;DP=41;DPB=41;DPRA=0.411765;EPP=9.52472;EPPR=85.5263;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=115;QR=1473;RO=38;RPL=0;RPP=9.52472;RPPR=85.5263;RPR=3;RUN=1;SAF=3;SAP=9.52472;SAR=0;SRF=38;SRP=85.5263;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:26:26,0:26:1030:0:0:0,-7.82678,-92.9925 0/0:8:8,0:8:315:0:0:0,-2.40824,-28.7137 0/1:7:4,3:4:128:3:115:-8.616,0,-9.72227 dDocent_Contig_13583 94 . G A 307.698 . AB=0.229885;ABP=58.1457;AC=3;AF=0.5;AN=6;AO=20;CIGAR=1X;DP=87;DPB=87;DPRA=0;EPP=46.4397;EPPR=148.499;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=683;QR=2236;RO=67;RPL=20;RPP=46.4397;RPPR=148.499;RPR=0;RUN=1;SAF=20;SAP=46.4397;SAR=0;SRF=67;SRP=148.499;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:43:30,13:30:973:13:440:-26.9807,0,-74.9208 0/1:18:15,3:15:515:3:105:-4.37762,0,-41.258 0/1:26:22,4:22:748:4:138:-4.93362,0,-59.8099 dDocent_Contig_13584 25 . A T 1576.83 . AB=0.355422;ABP=33.1493;AC=3;AF=0.5;AN=6;AO=59;CIGAR=1X;DP=166;DPB=166;DPRA=0;EPP=131.127;EPPR=235.358;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=2358;QR=4282;RO=107;RPL=0;RPP=131.127;RPPR=235.358;RPR=59;RUN=1;SAF=59;SAP=131.127;SAR=0;SRF=107;SRP=235.358;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:113:86,27:86:3435:27:1076:-63.108,0,-275.181 0/1:6:3,3:3:122:3:122:-9.56631,0,-9.56631 0/1:47:18,29:18:725:29:1160:-90.5311,0,-51.4279 dDocent_Contig_13586 27 . A C 35.4765 . AB=0.25;ABP=7.35324;AC=1;AF=0.166667;AN=6;AO=2;CIGAR=1X;DP=45;DPB=45;DPRA=0.432432;EPP=7.35324;EPPR=96.3836;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=82;QR=1664;RO=43;RPL=0;RPP=7.35324;RPPR=96.3836;RPR=2;RUN=1;SAF=2;SAP=7.35324;SAR=0;SRF=43;SRP=96.3836;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:25:25,0:25:971:0:0:0,-7.52575,-87.6923 0/0:12:12,0:12:457:0:0:0,-3.61236,-41.4766 0/1:8:6,2:6:236:2:82:-5.37144,0,-19.203 dDocent_Contig_13587 8 . G A 237.367 . AB=0.232143;ABP=37.909;AC=3;AF=0.5;AN=6;AO=13;CIGAR=1X;DP=56;DPB=56;DPRA=0;EPP=31.2394;EPPR=96.3836;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=500;QR=1641;RO=43;RPL=0;RPP=31.2394;RPPR=96.3836;RPR=13;RUN=1;SAF=13;SAP=31.2394;SAR=0;SRF=43;SRP=96.3836;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:37:32,5:32:1214:5:194:-6.69473,0,-98.4174 0/1:7:4,3:4:156:3:116:-8.71049,0,-12.3101 0/1:12:7,5:7:271:5:190:-13.8544,0,-21.1441 dDocent_Contig_13588 11 . A G 668.023 . AB=0.52;ABP=3.09716;AC=4;AF=0.666667;AN=6;AO=25;CIGAR=1X;DP=37;DPB=37;DPRA=0;EPP=57.2971;EPPR=29.068;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=59.5833;NS=3;NUMALT=1;ODDS=0;PAIRED=0;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=854;QR=469;RO=12;RPL=0;RPP=57.2971;RPPR=29.068;RPR=25;RUN=1;SAF=0;SAP=57.2971;SAR=25;SRF=12;SRP=29.068;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:10:6,4:6:241:4:132:-9.1961,0,-19.0564 0/1:15:6,9:6:228:9:312:-23.9007,0,-16.3566 1/1:12:0,12:0:0:12:410:-37.2283,-3.61236,0 dDocent_Contig_13589 23 . G A 1657.55 . AB=0.655738;ABP=15.8611;AC=4;AF=0.666667;AN=6;AO=54;CIGAR=1X;DP=76;DPB=76;DPRA=0;EPP=120.27;EPPR=50.7827;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=2111;QR=884;RO=22;RPL=0;RPP=120.27;RPPR=50.7827;RPR=54;RUN=1;SAF=54;SAP=120.27;SAR=0;SRF=22;SRP=50.7827;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:40:11,29:11:448:29:1160:-92.639,0,-28.6348 0/1:21:10,11:10:403:11:398:-29.8246,0,-30.3073 1/1:15:1,14:1:33:14:553:-46.8145,-1.21632,0 dDocent_Contig_13590 35 . A G 79.6483 . AB=0.0909091;ABP=19.0002;AC=3;AF=0.5;AN=6;AO=3;CIGAR=1X;DP=21;DPB=21;DPRA=0.8125;EPP=9.52472;EPPR=42.0968;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=8.67362e-19;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=123;QR=703;RO=18;RPL=0;RPP=9.52472;RPPR=42.0968;RPR=3;RUN=1;SAF=3;SAP=9.52472;SAR=0;SRF=18;SRP=42.0968;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:11:10,1:10:383:1:41:-0.783237,0,-31.5065 1/1:2:0,2:0:0:2:82:-7.77968,-0.60206,0 0/0:8:8,0:8:320:0:0:0,-2.40824,-29.1673 dDocent_Contig_13591 34 . G A 191.857 . AB=0.193548;ABP=28.2974;AC=3;AF=0.5;AN=6;AO=7;CIGAR=1X3M;DP=47;DPB=47;DPRA=0;EPP=18.2106;EPPR=76.8404;GTI=0;LEN=1;MEANALT=1.66667;MQM=60;MQMR=60;NS=3;NUMALT=2;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=279;QR=1303;RO=34;RPL=0;RPP=18.2106;RPPR=76.8404;RPR=7;RUN=1;SAF=7;SAP=18.2106;SAR=0;SRF=34;SRP=76.8404;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|1:22:18,0,4:18:717:0,4:0,156:-7.79229,-13.2108,-72.2603,0,-59.4406,-58.2365 1|1:9:2,5,2:2:75:5,2:182,82:-14.8853,-0.660085,-5.28038,-8.70615,0,-14.2501 0|0:16:14,1,1:14:511:1,1:39,41:0,-1.01844,-42.4127,-0.820439,-39.3267,-42.2332 dDocent_Contig_13594 8 . G A 43.1036 . AB=0.122449;ABP=63.6786;AC=1;AF=0.166667;AN=6;AO=13;CIGAR=1X;DP=224;DPB=224;DPRA=5.1;EPP=31.2394;EPPR=461.191;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=499;QR=8108;RO=211;RPL=0;RPP=31.2394;RPPR=461.191;RPR=13;RUN=1;SAF=13;SAP=31.2394;SAR=0;SRF=211;SRP=461.191;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:155:148,7:148:5710:7:271:0,-21.9032,-489.099 0/0:20:20,0:20:768:0:0:0,-6.0206,-69.4483 0/1:49:43,6:43:1630:6:228:-6.13425,0,-132.217 dDocent_Contig_13595 22 . G A 75.7703 . AB=0.133333;ABP=20.5268;AC=1;AF=0.166667;AN=6;AO=5;CIGAR=1X5M3D2M;DP=54;DPB=51;DPRA=26.5;EPP=13.8677;EPPR=96.3836;GTI=0;LEN=1;MEANALT=1.5;MQM=60;MQMR=60;NS=3;NUMALT=2;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=200;QR=1654;RO=43;RPL=0;RPP=13.8677;RPPR=96.3836;RPR=5;RUN=1;SAF=5;SAP=13.8677;SAR=0;SRF=43;SRP=96.3836;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|0:38:35,0,3:35:1343:0,3:0,119:0,-10.536,-120.752,-0.344125,-110.955,-110.052 0|0:1:1,0,0:1:39:0,0:0,0:0,-0.30103,-3.89656,-0.30103,-3.89656,-3.89656 0|1:15:7,6,2:7:272:6,2:241,81:-9.3988,0,-20.5321,-4.7879,-15.6555,-26.6119 dDocent_Contig_13596 24 . C T 124.212 . AB=0.222222;ABP=21.1059;AC=1;AF=0.25;AN=4;AO=6;CIGAR=1X;DP=35;DPB=35;DPRA=3.375;EPP=16.0391;EPPR=65.983;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=2;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=243;QR=1131;RO=29;RPL=0;RPP=16.0391;RPPR=65.983;RPR=6;RUN=1;SAF=6;SAP=16.0391;SAR=0;SRF=29;SRP=65.983;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:27:21,6:21:833:6:243:-14.1202,0,-67.1561 0/0:8:8,0:8:298:0:0:0,-2.40824,-27.1643 ./.:.:.:.:.:.:.:. dDocent_Contig_13597 12 . T G 2261.53 . AB=0.651786;ABP=25.423;AC=3;AF=0.5;AN=6;AO=73;CIGAR=1X;DP=112;DPB=112;DPRA=0;EPP=161.528;EPPR=85.5263;GTI=0;LEN=1;MEANALT=1.33333;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=6.93889e-18;PAIRED=0.90411;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=2938;QR=1487;RO=38;RPL=0;RPP=161.528;RPPR=85.5263;RPR=73;RUN=1;SAF=73;SAP=161.528;SAR=0;SRF=38;SRP=85.5263;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:81:24,56:24:952:56:2250:-178.334,0,-61.6464 0/1:15:12,3:12:454:3:122:-6.85704,0,-36.6792 0/1:16:2,14:2:81:14:566:-46.465,0,-2.86925 dDocent_Contig_13598 26 . C A 105.329 . AB=0.238095;ABP=15.5221;AC=2;AF=0.333333;AN=6;AO=5;CIGAR=1X;DP=22;DPB=22;DPRA=10.5;EPP=13.8677;EPPR=39.9253;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=203;QR=676;RO=17;RPL=0;RPP=13.8677;RPPR=39.9253;RPR=5;RUN=1;SAF=5;SAP=13.8677;SAR=0;SRF=17;SRP=39.9253;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:10:6,4:6:243:4:163:-12.0481,0,-19.2379 0/0:1:1,0:1:40:0:0:0,-0.30103,-3.99568 0/1:11:10,1:10:393:1:40:-0.684349,0,-32.41 dDocent_Contig_13599 14 . C T 210.649 . AB=0.416667;ABP=3.73412;AC=1;AF=0.166667;AN=6;AO=5;CIGAR=2X;DP=64;DPB=64;DPRA=0.3;EPP=13.8677;EPPR=120.27;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=2;ODDS=0;PAIRED=0;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=185;QR=2167;RO=54;RPL=0;RPP=13.8677;RPPR=120.27;RPR=5;RUN=1;SAF=5;SAP=13.8677;SAR=0;SRF=54;SRP=120.27;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|0:40:40,0,0:40:1611:0,0:0,0:0,-12.0412,-145.222,-12.0412,-145.222,-145.222 0|0:12:7,0,5:7:274:0,5:0,161:-11.1916,-13.2989,-35.8643,0,-22.9161,-21.4109 0|1:12:7,5,0:7:282:5,0:185,0:-13.3961,0,-22.1402,-15.5033,-23.6454,-38.7653 dDocent_Contig_13600 8 . G A 145.539 . AB=0.228571;ABP=25.4075;AC=2;AF=0.333333;AN=6;AO=9;CIGAR=1X3M2X2M1X3M1X2M1I1M1X3M2X;DP=59;DPB=59.1818;DPRA=0;EPP=22.5536;EPPR=102.898;GTI=0;LEN=1;MEANALT=2.33333;MQM=53.4444;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=347;QR=1770;RO=46;RPL=0;RPP=22.5536;RPPR=102.898;RPR=9;RUN=1;SAF=9;SAP=22.5536;SAR=0;SRF=46;SRP=102.898;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|0:24:22,1:22:860:1:39:0,-3.44359,-73.8263 0|1:5:3,1:3:113:1:39:-2.30531,0,-8.97189 0|1:30:21,7:21:797:7:269:-15.7052,0,-63.2579 dDocent_Contig_13601 13 . T C 201.058 . AB=0.538462;ABP=3.17734;AC=1;AF=0.166667;AN=6;AO=7;CIGAR=1X;DP=22;DPB=22;DPRA=2.88889;EPP=18.2106;EPPR=35.5824;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=283;QR=583;RO=15;RPL=0;RPP=18.2106;RPPR=35.5824;RPR=7;RUN=1;SAF=7;SAP=18.2106;SAR=0;SRF=15;SRP=35.5824;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:4:4,0:4:156:0:0:0,-1.20412,-14.417 0/1:13:6,7:6:232:7:283:-21.9296,0,-17.3345 0/0:5:5,0:5:195:0:0:0,-1.50515,-17.924 dDocent_Contig_13602 177 . G T 55.7742 . AB=0.12766;ABP=59.6072;AC=1;AF=0.166667;AN=6;AO=6;CIGAR=1X;DP=61;DPB=61;DPRA=6.71429;EPP=16.0391;EPPR=122.441;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=0.666667;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=232;QR=2117;RO=55;RPL=6;RPP=16.0391;RPPR=122.441;RPR=0;RUN=1;SAF=0;SAP=16.0391;SAR=6;SRF=0;SRP=122.441;SRR=55;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:47:41,6:41:1579:6:232:-7.10012,0,-128.219 0/0:3:3,0:3:114:0:0:0,-0.90309,-10.632 0/0:11:11,0:11:424:0:0:0,-3.31133,-38.514 dDocent_Contig_13603 21 . T C 2707.8 . AB=0.550633;ABP=6.52863;AC=3;AF=0.5;AN=6;AO=87;CIGAR=1X2M1X2M1X;DP=158;DPB=158;DPRA=0;EPP=191.928;EPPR=89.8692;GTI=0;LEN=1;MEANALT=2.66667;MQM=60;MQMR=60;NS=3;NUMALT=2;ODDS=2.77556e-17;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=3415;QR=1561;RO=40;RPL=0;RPP=191.928;RPPR=89.8692;RPR=87;RUN=1;SAF=87;SAP=191.928;SAR=0;SRF=40;SRP=89.8692;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|1:85:21,50,13:21:825:50,13:1978,506:-156.462,0,-52.806,-121.219,-26.2928,-185.16 1|0:21:4,10,6:4:145:10,6:371,235:-36.6416,-7.50646,-16.3233,-18.5168,0,-28.5461 0|1:52:15,27,10:15:591:27,10:1066,391:-83.1988,0,-40.4966,-55.5683,-16.4786,-101.18 dDocent_Contig_13604 15 . G C 1862.09 . AB=0.103226;ABP=214.96;AC=0;AF=0;AN=6;AO=16;CIGAR=4M1X3M1X15M;DP=155;DPB=152.583;DPRA=0;EPP=37.7539;EPPR=94.2121;GTI=0;LEN=1;MEANALT=4.33333;MQM=60;MQMR=60;NS=3;NUMALT=5;ODDS=2.77556e-17;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=645;QR=1631;RO=42;RPL=0;RPP=37.7539;RPPR=94.2121;RPR=16;RUN=1;SAF=16;SAP=37.7539;SAR=0;SRF=42;SRP=94.2121;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|0:75:16,41,2,0,0,10:16:617:41,2,0,0,10:1552,82,0,0,410:-122.389,0,-38.3204,-120.437,-43.8931,-170.501,-127.206,-50.6626,-171.103,-177.872,-127.206,-50.6626,-171.103,-177.872,-177.872,-93.3593,-16.8129,-137.258,-144.027,-144.027,-141.016 0|0:25:6,14,4,0,1,0:6:235:14,4,0,1,0:516,160,0,37,0:-40.3672,0,-15.1079,-28.9865,-6.1379,-47.1126,-42.1734,-19.3224,-48.3167,-61.501,-39.1467,-16.2976,-45.2899,-58.4743,-58.1733,-42.1734,-19.3224,-48.3167,-61.501,-58.4743,-61.501 0|0:55:20,11,10,3,3,6:20:779:11,10,3,3,6:426,403,116,115,241:-28.9727,0,-60.7108,-1.77165,-30.8015,-62.7864,-25.4663,-54.4949,-56.2693,-88.5864,-25.5553,-54.5839,-56.3582,-80.0511,-88.6753,-15.1324,-44.1616,-45.9357,-69.6292,-69.7181,-77.3503 dDocent_Contig_13606 19 . A T 1286.29 . AB=0.0869565;ABP=37.093;AC=0;AF=0;AN=6;AO=2;CIGAR=1X1M1X;DP=92;DPB=92;DPRA=0;EPP=7.35324;EPPR=94.2121;GTI=0;LEN=1;MEANALT=2;MQM=60;MQMR=60;NS=3;NUMALT=2;ODDS=6.93889e-18;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=79;QR=1632;RO=42;RPL=0;RPP=7.35324;RPPR=94.2121;RPR=2;RUN=1;SAF=2;SAP=7.35324;SAR=0;SRF=42;SRP=94.2121;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|0:52:29,0,23:29:1122:0,23:0,835:-59.7991,-68.529,-160.698,0,-92.5421,-85.6184 0|0:23:4,2,17:4:159:2,17:79,642:-51.3885,-46.0898,-58.5826,0,-6.59264,-7.97526 0|0:17:9,0,8:9:351:0,8:0,308:-22.9643,-25.6735,-54.5284,0,-29.2419,-26.8337 dDocent_Contig_13607 27 . C T 31.8882 . AB=0.285714;ABP=5.80219;AC=1;AF=0.166667;AN=6;AO=2;CIGAR=1X;DP=18;DPB=18;DPRA=1.27273;EPP=3.0103;EPPR=37.7539;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=0.625;PAO=0;PQA=0;PQR=0;PRO=0;QA=75;QR=649;RO=16;RPL=0;RPP=7.35324;RPPR=37.7539;RPR=2;RUN=1;SAF=1;SAP=3.0103;SAR=1;SRF=16;SRP=37.7539;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:5:5,0:5:203:0:0:0,-1.50515,-18.6528 0/1:7:5,2:5:202:2:75:-5.01238,0,-16.4547 0/0:6:6,0:6:244:0:0:0,-1.80618,-22.3388 dDocent_Contig_13608 14 . G C 33.2681 . AB=0.125;ABP=42.0968;AC=1;AF=0.166667;AN=6;AO=4;CIGAR=1X;DP=47;DPB=47;DPRA=4.26667;EPP=11.6962;EPPR=96.3836;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=160;QR=1702;RO=43;RPL=0;RPP=11.6962;RPPR=96.3836;RPR=4;RUN=1;SAF=4;SAP=11.6962;SAR=0;SRF=43;SRP=96.3836;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:10:10,0:10:396:0:0:0,-3.0103,-35.9954 0/1:32:28,4:28:1109:4:160:-5.15047,0,-90.4653 0/0:5:5,0:5:197:0:0:0,-1.50515,-18.1059 dDocent_Contig_13609 16 . C A 2737.4 . AB=0.511111;ABP=3.20332;AC=3;AF=0.5;AN=6;AO=92;CIGAR=1X;DP=180;DPB=180;DPRA=0;EPP=202.786;EPPR=194.1;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=3696;QR=3551;RO=88;RPL=0;RPP=202.786;RPPR=194.1;RPR=92;RUN=1;SAF=92;SAP=202.786;SAR=0;SRF=88;SRP=194.1;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:85:42,43:42:1689:43:1735:-130.779,0,-126.646 0/1:14:4,10:4:159:10:405:-32.596,0,-10.4775 0/1:81:42,39:42:1703:39:1556:-115.889,0,-129.104 dDocent_Contig_13610 72 . C T 277.293 . AB=0.5;ABP=3.0103;AC=2;AF=0.333333;AN=6;AO=12;CIGAR=1X;DP=35;DPB=35;DPRA=1.09091;EPP=29.068;EPPR=52.9542;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=420;QR=736;RO=23;RPL=12;RPP=29.068;RPPR=52.9542;RPR=0;RUN=1;SAF=12;SAP=29.068;SAR=0;SRF=23;SRP=52.9542;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:17:7,10:7:224:10:352:-26.9008,0,-15.3567 0/1:7:5,2:5:167:2:68:-4.35072,0,-13.2521 0/0:11:11,0:11:345:0:0:0,-3.31133,-31.3568 dDocent_Contig_13611 107 . N G 66.4848 . AB=0;ABP=0;AC=2;AF=1;AN=2;AO=2;CIGAR=1X;DP=2;DPB=2;DPRA=0;EPP=7.35324;EPPR=0;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=0;NS=1;NUMALT=1;ODDS=5.99146;PAIRED=1;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=70;QR=0;RO=0;RPL=0;RPP=7.35324;RPPR=0;RPR=2;RUN=1;SAF=0;SAP=7.35324;SAR=2;SRF=0;SRP=0;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 1/1:2:0,2:0:0:2:70:-6.6474,-0.60206,0 ./.:.:.:.:.:.:.:. ./.:.:.:.:.:.:.:. dDocent_Contig_13612 8 . G A 2688.63 . AB=0.111111;ABP=50.3001;AC=1;AF=0.166667;AN=6;AO=4;CIGAR=2M1X1M2X2M2X3M1X;DP=146;DPB=148.857;DPRA=0;EPP=11.6962;EPPR=42.0968;GTI=0;LEN=1;MEANALT=5;MQM=59;MQMR=60;NS=3;NUMALT=4;ODDS=2.77556e-17;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=156;QR=704;RO=18;RPL=0;RPP=11.6962;RPPR=42.0968;RPR=4;RUN=1;SAF=4;SAP=11.6962;SAR=0;SRF=18;SRP=42.0968;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 1|0:92:8,28,0,46,10:8:314:28,0,46,10:1088,0,1828,400:-211.657,-124.672,-142.067,-214.065,-150.496,-239.89,-63.5666,0,-89.3919,-75.5445,-181.114,-117.545,-206.939,-56.4393,-203.929 0|0:18:2,4,0,8,4:2:78:4,0,8,4:147,0,310,163:-31.9097,-20.5023,-25.7093,-32.5117,-26.9135,-38.9238,-7.04797,-1.45778,-13.4602,-11.052,-19.0578,-13.4606,-25.4708,0,-24.2667 0|0:36:8,7,4,10,6:8:312:7,4,10,6:276,156,403,236:-30.814,-10.5137,-34.0508,-20.4033,-23.3388,-44.8434,0,-2.93534,-12.8259,-22.6352,-13.8098,-16.7453,-26.635,-6.23183,-37.6479 dDocent_Contig_13613 70 . G A 319.003 . AB=0.6875;ABP=7.89611;AC=1;AF=0.166667;AN=6;AO=11;CIGAR=1X1M1X;DP=35;DPB=35;DPRA=1.68421;EPP=26.8965;EPPR=55.1256;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=8.67362e-19;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=421;QR=898;RO=24;RPL=11;RPP=26.8965;RPPR=55.1256;RPR=0;RUN=1;SAF=11;SAP=26.8965;SAR=0;SRF=24;SRP=55.1256;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|1:16:5,11:5:183:11:421:-33.4232,0,-12.0085 0|0:11:11,0:11:413:0:0:0,-3.31133,-37.5184 0|0:8:8,0:8:302:0:0:0,-2.40824,-27.5371 dDocent_Contig_13614 28 . C T 277.749 . AB=0.213333;ABP=56.5443;AC=2;AF=0.333333;AN=6;AO=20;CIGAR=1X;DP=125;DPB=125;DPRA=0;EPP=46.4397;EPPR=231.015;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=753;QR=4109;RO=105;RPL=0;RPP=46.4397;RPPR=231.015;RPR=20;RUN=1;SAF=20;SAP=46.4397;SAR=0;SRF=105;SRP=231.015;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:50:46,4:46:1806:4:162:0,-0.0847535,-147.783 0/1:42:34,8:34:1322:8:310:-15.616,0,-106.601 0/1:33:25,8:25:981:8:281:-15.6806,0,-78.6513 dDocent_Contig_13615 107 . N G 98.3427 . AB=0;ABP=0;AC=2;AF=1;AN=2;AO=4;CIGAR=1X;DP=4;DPB=4;DPRA=0;EPP=11.6962;EPPR=0;GTI=0;LEN=1;MEANALT=1;MQM=27.5;MQMR=0;NS=1;NUMALT=1;ODDS=7.37776;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=137;QR=0;RO=0;RPL=0;RPP=11.6962;RPPR=0;RPR=4;RUN=1;SAF=0;SAP=11.6962;SAR=4;SRF=0;SRP=0;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL ./.:.:.:.:.:.:.:. ./.:.:.:.:.:.:.:. 1/1:4:0,4:0:0:4:137:-9.834,-1.20412,0 dDocent_Contig_13618 23 . G T 1724.02 . AB=0.128;ABP=153.259;AC=1;AF=0.166667;AN=6;AO=16;CIGAR=2X1M2X;DP=125;DPB=125;DPRA=0;EPP=37.7539;EPPR=111.584;GTI=0;LEN=1;MEANALT=2.33333;MQM=60;MQMR=60;NS=3;NUMALT=2;ODDS=1.38778e-17;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=639;QR=1979;RO=50;RPL=0;RPP=37.7539;RPPR=111.584;RPR=16;RUN=1;SAF=16;SAP=37.7539;SAR=0;SRF=50;SRP=111.584;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|0:76:26,8,42:26:1034:8,42:323,1686:-131.091,-112.29,-195.014,0,-58.5003,-72.4857 0|1:7:4,2,1:4:160:2,1:78,36:-5.22735,0,-12.6101,-3.504,-10.2826,-16.3899 0|0:42:20,6,15:20:785:6,15:238,580:-41.6062,-28.0323,-90.787,0,-44.9611,-60.0385 dDocent_Contig_13620 8 . G A 761.828 . AB=0.432836;ABP=5.63551;AC=3;AF=0.5;AN=6;AO=29;CIGAR=1X;DP=67;DPB=67;DPRA=0;EPP=65.983;EPPR=85.5263;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=0.655172;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=1120;QR=1449;RO=38;RPL=0;RPP=65.983;RPPR=85.5263;RPR=29;RUN=1;SAF=29;SAP=65.983;SAR=0;SRF=38;SRP=85.5263;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:46:24,22:24:917:22:851:-63.0651,0,-68.9996 0/1:5:3,2:3:111:2:78:-5.89832,0,-8.84834 0/1:16:11,5:11:421:5:191:-12.7422,0,-33.4256 dDocent_Contig_13621 10 . T G 9311.14 . AB=0.035124;ABP=911.529;AC=0;AF=0;AN=6;AO=17;CIGAR=2X2M1X1M;DP=484;DPB=484;DPRA=0;EPP=39.9253;EPPR=239.701;GTI=0;LEN=1;MEANALT=5.66667;MQM=47;MQMR=60;NS=3;NUMALT=3;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=665;QR=4311;RO=109;RPL=0;RPP=39.9253;RPPR=239.701;RPR=17;RUN=1;SAF=17;SAP=39.9253;SAR=0;SRF=109;SRP=239.701;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|0:219:45,8,20,138:45:1783:8,20,138:317,804,5514:-440.609,-429.099,-573.447,-387.898,-509.598,-528.634,0,-121.709,-80.5049,-105.224 0|0:112:32,6,0,67:32:1262:6,0,67:233,0,2648:-208.277,-199.139,-301.164,-217.91,-302.97,-321.742,0,-85.0763,-103.847,-83.6782 0|0:153:32,3,16,91:32:1266:3,16,91:115,641,3615:-287.75,-288.39,-391.672,-244.575,-339.767,-343.943,0,-95.1945,-51.3769,-76.7928 dDocent_Contig_13622 8 . G A 290.214 . AB=0.0833333;ABP=39.2015;AC=0;AF=0;AN=6;AO=2;CIGAR=2X;DP=65;DPB=65;DPRA=0;EPP=7.35324;EPPR=96.3836;GTI=0;LEN=1;MEANALT=3;MQM=60;MQMR=60;NS=3;NUMALT=3;ODDS=0;PAIRED=0;PAIREDR=0.372093;PAO=0;PQA=0;PQR=0;PRO=0;QA=77;QR=1616;RO=43;RPL=0;RPP=7.35324;RPPR=96.3836;RPR=2;RUN=1;SAF=2;SAP=7.35324;SAR=0;SRF=43;SRP=96.3836;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|0:24:13,2,3,6:13:494:2,3,6:77,117,225:-14.4979,-12.088,-51.9987,-8.79027,-42.9816,-48.4015,0,-34.1842,-30.8878,-38.7008 0|0:23:17,0,2,4:17:627:0,2,4:0,78,155:-7.6029,-12.7204,-63.9794,-6.30771,-57.5661,-56.964,0,-51.2543,-44.8403,-50.0502 0|0:18:13,0,0,5:13:495:0,0,5:0,0,195:-12.4435,-16.3569,-56.953,-16.3569,-56.953,-56.953,0,-40.9823,-40.9823,-39.4771 dDocent_Contig_13623 30 . T A 1667.55 . AB=0.4;ABP=16.0391;AC=3;AF=0.5;AN=6;AO=60;CIGAR=1X;DP=150;DPB=150;DPRA=0;EPP=133.299;EPPR=196.271;GTI=0;LEN=1;MEANALT=1.33333;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=2406;QR=3569;RO=89;RPL=0;RPP=133.299;RPPR=196.271;RPR=60;RUN=1;SAF=60;SAP=133.299;SAR=0;SRF=89;SRP=196.271;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:105:63,41:63:2526:41:1644:-116.522,0,-195.807 0/1:11:7,4:7:281:4:160:-11.4721,0,-22.3508 0/1:34:19,15:19:762:15:602:-44.2839,0,-58.6662 dDocent_Contig_13624 8 . G A 2995.65 . AB=0.524752;ABP=4.08529;AC=3;AF=0.5;AN=6;AO=106;CIGAR=1X;DP=202;DPB=202;DPRA=0;EPP=233.186;EPPR=211.472;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=4056;QR=3668;RO=96;RPL=0;RPP=233.186;RPPR=211.472;RPR=106;RUN=1;SAF=106;SAP=233.186;SAR=0;SRF=96;SRP=211.472;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:114:67,47:67:2565:47:1802:-128.116,0,-196.729 0/1:28:4,24:4:152:24:921:-74.7777,0,-5.62036 0/1:60:25,35:25:951:35:1333:-102.194,0,-67.8395 dDocent_Contig_13625 28 . C G 77.1434 . AB=0.113636;ABP=117.111;AC=2;AF=0.333333;AN=6;AO=11;CIGAR=1X;DP=148;DPB=148;DPRA=0;EPP=26.8965;EPPR=300.502;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=6.93889e-18;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=448;QR=5494;RO=137;RPL=0;RPP=26.8965;RPPR=300.502;RPR=11;RUN=1;SAF=11;SAP=26.8965;SAR=0;SRF=137;SRP=300.502;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:60:59,1:59:2377:1:41:0,-13.9672,-209.987 0/1:31:26,5:26:1043:5:205:-9.50308,0,-84.8312 0/1:57:52,5:52:2074:5:202:-1.40316,0,-169.682 dDocent_Contig_13626 11 . C A 128.01 . AB=0.177778;ABP=43.5927;AC=2;AF=0.333333;AN=6;AO=8;CIGAR=2M1X;DP=70;DPB=69;DPRA=0.9;EPP=20.3821;EPPR=131.127;GTI=0;LEN=1;MEANALT=1.5;MQM=60;MQMR=60;NS=3;NUMALT=2;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=321;QR=2243;RO=59;RPL=0;RPP=20.3821;RPPR=131.127;RPR=8;RUN=1;SAF=8;SAP=20.3821;SAR=0;SRF=59;SRP=131.127;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|1:23:18,2,3:18:688:2,3:77,121:-4.56661,-3.67003,-59.4989,0,-50.1238,-55.5433 0|0:25:24,1,0:24:901:1,0:35,0:0,-4.02712,-77.9009,-7.22472,-78.2019,-81.0487 0|1:22:17,0,5:17:654:0,5:0,200:-11.7569,-16.8744,-70.5513,0,-54.073,-52.5679 dDocent_Contig_13627 7 . A G 112.097 . AB=0.258065;ABP=18.771;AC=2;AF=0.333333;AN=6;AO=8;CIGAR=1X;DP=51;DPB=51;DPRA=0.775;EPP=20.3821;EPPR=96.3836;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=260;QR=1651;RO=43;RPL=0;RPP=20.3821;RPPR=96.3836;RPR=8;RUN=1;SAF=8;SAP=20.3821;SAR=0;SRF=43;SRP=96.3836;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:20:20,0:20:773:0:0:0,-6.0206,-69.8973 0/1:24:18,6:18:685:6:188:-10.0029,0,-54.7593 0/1:7:5,2:5:193:2:72:-4.72943,0,-15.6343 dDocent_Contig_13628 7 . A G 501.755 . AB=0.468085;ABP=3.42611;AC=3;AF=0.5;AN=6;AO=22;CIGAR=1X;DP=47;DPB=47;DPRA=0;EPP=50.7827;EPPR=48.9587;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=0.5;PAIREDR=0.92;PAO=0;PQA=0;PQR=0;PRO=0;QA=765;QR=953;RO=25;RPL=0;RPP=50.7827;RPPR=57.2971;RPR=22;RUN=1;SAF=22;SAP=50.7827;SAR=0;SRF=24;SRP=48.9587;SRR=1;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:15:7,8:7:271:8:299:-22.7496,0,-20.2409 0/1:21:14,7:14:527:7:251:-16.6081,0,-41.4501 0/1:11:4,7:4:155:7:215:-16.3407,0,-11.0141 dDocent_Contig_13629 85 . T C 233.438 . AB=0.5;ABP=3.0103;AC=2;AF=0.333333;AN=6;AO=12;CIGAR=1X;DP=42;DPB=42;DPRA=0.666667;EPP=29.068;EPPR=68.1545;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=372;QR=1014;RO=30;RPL=12;RPP=29.068;RPPR=68.1545;RPR=0;RUN=1;SAF=12;SAP=29.068;SAR=0;SRF=30;SRP=68.1545;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:16:10,6:10:344:6:199:-13.4199,0,-26.4764 0/1:8:2,6:2:68:6:173:-13.4455,0,-4.04964 0/0:18:18,0:18:602:0:0:0,-5.41854,-54.4958 dDocent_Contig_13631 15 . G A 61.5371 . AB=0.181818;ABP=22.3561;AC=1;AF=0.166667;AN=6;AO=4;CIGAR=1X;DP=80;DPB=80;DPRA=0.758621;EPP=11.6962;EPPR=168.042;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=158;QR=2958;RO=76;RPL=0;RPP=11.6962;RPPR=168.042;RPR=4;RUN=1;SAF=4;SAP=11.6962;SAR=0;SRF=76;SRP=168.042;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:41:41,0:41:1595:0:0:0,-12.3422,-143.78 0/1:22:18,4:18:695:4:158:-7.97761,0,-56.245 0/0:17:17,0:17:668:0:0:0,-5.11751,-60.4489 dDocent_Contig_13632 26 . T A 215.086 . AB=0.117117;ABP=285.693;AC=3;AF=0.5;AN=6;AO=26;CIGAR=1X;DP=222;DPB=222;DPRA=0;EPP=59.4686;EPPR=428.619;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=1.38778e-17;PAIRED=1;PAIREDR=0.989796;PAO=0;PQA=0;PQR=0;PRO=0;QA=1031;QR=7831;RO=196;RPL=0;RPP=59.4686;RPPR=428.619;RPR=26;RUN=1;SAF=26;SAP=59.4686;SAR=0;SRF=196;SRP=428.619;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:123:111,12:111:4413:12:476:-6.16191,0,-360.073 0/1:20:16,4:16:639:4:149:-7.75036,0,-51.8238 0/1:79:69,10:69:2779:10:406:-13.1192,0,-226.43 dDocent_Contig_13633 11 . C T 450.821 . AB=0.548387;ABP=3.64073;AC=3;AF=0.5;AN=6;AO=17;CIGAR=1X;DP=31;DPB=31;DPRA=0;EPP=39.9253;EPPR=33.4109;GTI=0;LEN=1;MEANALT=1;MQM=44.2353;MQMR=60;NS=3;NUMALT=1;ODDS=3.46945e-18;PAIRED=0;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=682;QR=555;RO=14;RPL=0;RPP=39.9253;RPPR=33.4109;RPR=17;RUN=1;SAF=17;SAP=39.9253;SAR=0;SRF=14;SRP=33.4109;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:18:5,13:5:204:13:519:-40.1442,0,-13.3255 0/1:6:4,2:4:163:2:81:-5.34378,0,-13.2522 0/1:7:5,2:5:188:2:82:-5.11684,0,-15.1707 dDocent_Contig_13634 19 . T C 913.391 . AB=0.322581;ABP=19.9618;AC=1;AF=0.166667;AN=6;AO=20;CIGAR=1M5D4M1X1M;DP=81;DPB=58.5;DPRA=0;EPP=46.4397;EPPR=61.6401;GTI=0;LEN=1;MEANALT=2;MQM=60;MQMR=60;NS=3;NUMALT=2;ODDS=0;PAIRED=1;PAIREDR=0.703704;PAO=0;PQA=0;PQR=0;PRO=0;QA=735;QR=1044;RO=27;RPL=0;RPP=46.4397;RPPR=61.6401;RPR=20;RUN=1;SAF=20;SAP=46.4397;SAR=0;SRF=27;SRP=61.6401;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|0:43:14,14,15:14:542:14,15:522,574:-42.8526,-4.33967,-44.647,0,-1.80178,-40.0112 1|0:19:5,6,8:5:190:6,8:213,280:-23.0137,-7.16456,-20.9514,-1.74571,0,-14.9303 0|0:19:8,0,11:8:312:0,11:0,405:-30.9908,-33.399,-59.0545,0,-26.0357,-22.7243 dDocent_Contig_13635 8 . G A 519.169 . AB=0.26506;ABP=42.8032;AC=3;AF=0.5;AN=6;AO=22;CIGAR=1X2M1X;DP=83;DPB=83;DPRA=0;EPP=50.7827;EPPR=102.898;GTI=0;LEN=1;MEANALT=2;MQM=60;MQMR=60;NS=3;NUMALT=2;ODDS=0;PAIRED=1;PAIREDR=0.978261;PAO=0;PQA=0;PQR=0;PRO=0;QA=862;QR=1783;RO=46;RPL=0;RPP=50.7827;RPPR=102.898;RPR=22;RUN=1;SAF=22;SAP=50.7827;SAR=0;SRF=46;SRP=102.898;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|1:52:27,13,11:27:1041:13,11:510,420:-33.8333,0,-81.5822,-7.50572,-51.0429,-89.6804 0|1:11:8,3,0:8:313:3,0:116,0:-7.50637,0,-25.2235,-9.91461,-26.1266,-35.6537 0|1:20:11,6,3:11:429:6,3:236,119:-16.1002,0,-33.4524,-9.61471,-25.4615,-43.9733 dDocent_Contig_13636 18 . T C 4274.52 . AB=0.822086;ABP=149.884;AC=3;AF=0.5;AN=6;AO=134;CIGAR=1X;DP=163;DPB=163;DPRA=0;EPP=293.988;EPPR=65.983;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=6.93889e-18;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=5349;QR=1162;RO=29;RPL=0;RPP=293.988;RPPR=65.983;RPR=134;RUN=1;SAF=134;SAP=293.988;SAR=0;SRF=29;SRP=65.983;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:105:19,86:19:756:86:3423:-276.496,0,-36.7531 0/1:9:4,5:4:162:5:202:-15.8526,0,-12.2577 0/1:49:6,43:6:244:43:1724:-140.626,0,-7.58835 dDocent_Contig_13638 12 . C T 149.883 . AB=0.269231;ABP=15.0369;AC=2;AF=0.333333;AN=6;AO=8;CIGAR=1X;DP=42;DPB=42;DPRA=0;EPP=20.3821;EPPR=76.8404;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=0;PAIREDR=0.823529;PAO=0;PQA=0;PQR=0;PRO=0;QA=322;QR=1365;RO=34;RPL=0;RPP=20.3821;RPPR=76.8404;RPR=8;RUN=1;SAF=8;SAP=20.3821;SAR=0;SRF=34;SRP=76.8404;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:13:9,4:9:364:4:164:-11.2365,0,-29.2112 0/0:16:15,1:15:595:1:38:0,-1.01921,-50.0914 0/1:13:10,3:10:406:3:120:-7.27451,0,-32.9866 dDocent_Contig_13639 52 . T C 41.3015 . AB=0.166667;ABP=20.3821;AC=1;AF=0.166667;AN=6;AO=5;CIGAR=1X;DP=54;DPB=54;DPRA=4.9;EPP=13.8677;EPPR=109.412;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=203;QR=1746;RO=49;RPL=5;RPP=13.8677;RPPR=109.412;RPR=0;RUN=1;SAF=5;SAP=13.8677;SAR=0;SRF=49;SRP=109.412;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:31:29,2:29:1034:2:81:0,-1.6462,-85.6811 0/0:5:5,0:5:167:0:0:0,-1.50515,-15.3579 0/1:18:15,3:15:545:3:122:-5.95395,0,-43.9646 dDocent_Contig_13640 33 . A C 41.4969 . AB=0.333333;ABP=4.45795;AC=1;AF=0.166667;AN=6;AO=2;CIGAR=1X;DP=17;DPB=17;DPRA=1.09091;EPP=7.35324;EPPR=35.5824;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=0;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=82;QR=602;RO=15;RPL=0;RPP=7.35324;RPPR=35.5824;RPR=2;RUN=1;SAF=2;SAP=7.35324;SAR=0;SRF=15;SRP=35.5824;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:5:5,0:5:205:0:0:0,-1.50515,-18.835 0/0:6:6,0:6:237:0:0:0,-1.80618,-21.7026 0/1:6:4,2:4:160:2:82:-5.9735,0,-12.9772 dDocent_Contig_13641 146 . A G 85.7512 . AB=0.238095;ABP=15.5221;AC=2;AF=0.333333;AN=6;AO=7;CIGAR=1X;DP=47;DPB=47;DPRA=0;EPP=18.2106;EPPR=89.8692;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=0.285714;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=278;QR=1608;RO=40;RPL=0;RPP=18.2106;RPPR=89.8692;RPR=7;RUN=1;SAF=0;SAP=18.2106;SAR=7;SRF=0;SRP=89.8692;SRR=40;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:26:24,2:24:967:2:82:0,-0.0471021,-79.5477 0/1:7:4,3:4:160:3:122:-9.26528,0,-12.6762 0/1:14:12,2:12:481:2:74:-2.8096,0,-39.4249 dDocent_Contig_13642 20 . C T 137.54 . AB=0.181818;ABP=12.6832;AC=3;AF=0.5;AN=6;AO=2;CIGAR=1X1M;DP=23;DPB=23;DPRA=0;EPP=7.35324;EPPR=33.4109;GTI=0;LEN=1;MEANALT=2;MQM=60;MQMR=60;NS=3;NUMALT=2;ODDS=3.46945e-18;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=81;QR=561;RO=14;RPL=0;RPP=7.35324;RPPR=33.4109;RPR=2;RUN=1;SAF=2;SAP=7.35324;SAR=0;SRF=14;SRP=33.4109;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|1:11:6,3,2:6:237:3,2:118,81:-7.89373,0,-18.5913,-3.01612,-12.8128,-21.917 0|1:4:2,2,0:2:79:2,0:79,0:-6.29351,0,-6.29351,-6.89557,-6.89557,-13.3965 0|1:8:6,2,0:6:245:2,0:79,0:-5.08939,0,-20.0212,-6.89557,-20.6233,-27.121 dDocent_Contig_13643 168 . A G 34.0828 . AB=0.285714;ABP=5.80219;AC=1;AF=0.25;AN=4;AO=2;CIGAR=1X;DP=13;DPB=13;DPRA=1.16667;EPP=7.35324;EPPR=26.8965;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=2;NUMALT=1;ODDS=0;PAIRED=0;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=76;QR=440;RO=11;RPL=2;RPP=7.35324;RPPR=26.8965;RPR=0;RUN=1;SAF=0;SAP=7.35324;SAR=2;SRF=0;SRP=26.8965;SRR=11;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:7:5,2:5:196:2:76:-5.10705,0,-15.905 ./.:.:.:.:.:.:.:. 0/0:6:6,0:6:244:0:0:0,-1.80618,-22.3388 dDocent_Contig_13644 16 . A C 35.2811 . AB=0.15;ABP=24.2907;AC=1;AF=0.166667;AN=6;AO=3;CIGAR=1X;DP=186;DPB=186;DPRA=0.240964;EPP=9.52472;EPPR=400.39;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=0.994536;PAO=0;PQA=0;PQR=0;PRO=0;QA=122;QR=7172;RO=183;RPL=0;RPP=9.52472;RPPR=400.39;RPR=3;RUN=1;SAF=3;SAP=9.52472;SAR=0;SRF=183;SRP=400.39;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:116:116,0:116:4532:0:0:0,-34.9195,-407.854 0/1:20:17,3:17:656:3:122:-5.35189,0,-53.3494 0/0:50:50,0:50:1984:0:0:0,-15.0515,-178.762 dDocent_Contig_13645 27 . G A 306.605 . 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C T 343.298 . AB=0.22973;ABP=49.9611;AC=2;AF=0.333333;AN=6;AO=23;CIGAR=2X;DP=187;DPB=187;DPRA=0;EPP=52.9542;EPPR=359.132;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=888;QR=6480;RO=164;RPL=0;RPP=52.9542;RPPR=359.132;RPR=23;RUN=1;SAF=23;SAP=52.9542;SAR=0;SRF=164;SRP=359.132;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|0:113:107,6:107:4255:6:228:0,-13.1318,-362.041 0|1:9:7,2:7:281:2:79:-4.78836,0,-22.9529 0|1:65:50,15:50:1944:15:581:-33.0641,0,-155.6 dDocent_Contig_13657 7 . A G 506.358 . AB=0.320513;ABP=24.8364;AC=3;AF=0.5;AN=6;AO=25;CIGAR=1X1M;DP=78;DPB=78;DPRA=0;EPP=57.2971;EPPR=96.3836;GTI=0;LEN=1;MEANALT=2;MQM=60;MQMR=60;NS=3;NUMALT=2;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=844;QR=1642;RO=43;RPL=0;RPP=57.2971;RPPR=96.3836;RPR=25;RUN=1;SAF=25;SAP=57.2971;SAR=0;SRF=43;SRP=96.3836;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|1:36:30,0,6:30:1152:0,6:0,212:-8.58697,-17.6179,-112.209,0,-94.9493,-93.1432 0|1:31:9,8,12:9:342:8,12:275,386:-28.4026,-8.76719,-34.4366,0,-5.74995,-24.4665 0|1:11:4,0,7:4:148:0,7:0,246:-19.1691,-20.3732,-32.4871,0,-12.4769,-10.3697 dDocent_Contig_13659 107 . N T 64.5902 . AB=0;ABP=0;AC=2;AF=1;AN=2;AO=2;CIGAR=1X1M1X;DP=2;DPB=2;DPRA=0;EPP=7.35324;EPPR=0;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=0;NS=1;NUMALT=1;ODDS=5.99146;PAIRED=1;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=68;QR=0;RO=0;RPL=0;RPP=7.35324;RPPR=0;RPR=2;RUN=1;SAF=0;SAP=7.35324;SAR=2;SRF=0;SRP=0;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 1|1:2:0,2:0:0:2:68:-6.45793,-0.60206,0 .:.:.:.:.:.:.:. .:.:.:.:.:.:.:. dDocent_Contig_13662 20 . A G 862.291 . AB=0.239521;ABP=101.429;AC=3;AF=0.5;AN=6;AO=40;CIGAR=1X1M1X;DP=167;DPB=167;DPRA=0;EPP=89.8692;EPPR=278.787;GTI=0;LEN=1;MEANALT=1;MQM=59.575;MQMR=46.2835;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=0.582677;PAO=0;PQA=0;PQR=0;PRO=0;QA=1567;QR=5017;RO=127;RPL=0;RPP=89.8692;RPPR=278.787;RPR=40;RUN=1;SAF=40;SAP=89.8692;SAR=0;SRF=127;SRP=278.787;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|1:57:38,19:38:1513:19:753:-50.9368,0,-112.996 0|1:57:48,9:48:1873:9:339:-13.6681,0,-115.069 0|1:53:41,12:41:1631:12:475:-27.1471,0,-116.589 dDocent_Contig_13664 12 . T G 812.769 . AB=0.0555556;ABP=250.076;AC=0;AF=0;AN=6;AO=8;CIGAR=1X2M1D1X;DP=159;DPB=154.4;DPRA=0;EPP=20.3821;EPPR=128.956;GTI=0;LEN=1;MEANALT=3.5;MQM=19;MQMR=59.5;NS=3;NUMALT=3;ODDS=0;PAIRED=0;PAIREDR=0.706897;PAO=0;PQA=0;PQR=0;PRO=0;QA=314;QR=2234;RO=58;RPL=0;RPP=20.3821;RPPR=128.956;RPR=8;RUN=1;SAF=8;SAP=20.3821;SAR=0;SRF=58;SRP=128.956;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|0:110:35,9,7,56:35:1344:9,7,56:337,275,1244:-69.5004,-65.8835,-173.554,-70.2006,-166.432,-178.471,0,-96.2892,-100.601,-93.5594 0|0:15:6,0,0,8:6:231:0,0,8:0,0,174:-9.31945,-11.1256,-30.0159,-11.1256,-30.0159,-30.0159,0,-19.0018,-19.0018,-16.5935 0|0:34:17,6,1,10:17:659:6,1,10:236,39,209:-7.97984,-3.58729,-56.0135,-11.6923,-56.4188,-65.5992,0,-44.7765,-52.8357,-51.2243 dDocent_Contig_13665 8 . G A 64.5483 . AB=0.5;ABP=3.0103;AC=1;AF=0.5;AN=2;AO=3;CIGAR=1X;DP=6;DPB=6;DPRA=0;EPP=9.52472;EPPR=9.52472;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=1;NUMALT=1;ODDS=14.0064;PAIRED=1;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=110;QR=106;RO=3;RPL=0;RPP=9.52472;RPPR=9.52472;RPR=3;RUN=1;SAF=0;SAP=9.52472;SAR=3;SRF=0;SRP=9.52472;SRR=3;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL ./.:.:.:.:.:.:.:. 0/1:6:3,3:3:106:3:110:-8.45482,0,-8.08292 ./.:.:.:.:.:.:.:. dDocent_Contig_13667 115 . C T 311.778 . AB=0.0412371;ABP=180.332;AC=0;AF=0;AN=6;AO=4;CIGAR=1X3M1X4M;DP=147;DPB=155.889;DPRA=0;EPP=11.6962;EPPR=126.784;GTI=0;LEN=1;MEANALT=10.5;MQM=60;MQMR=53.5789;NS=3;NUMALT=9;ODDS=0;PAIRED=0;PAIREDR=0.333333;PAO=0;PQA=0;PQR=0;PRO=0;QA=137;QR=1898;RO=57;RPL=0;RPP=11.6962;RPPR=126.784;RPR=4;RUN=1;SAF=0;SAP=11.6962;SAR=4;SRF=0;SRP=126.784;SRR=57;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|0:45:19,3,3,4,3,4,2,0,0,0:19:629:3,3,4,3,4,2,0,0,0:104,105,128,103,135,69,0,0,0:-5.22393,-3.02795,-51.4647,-2.3977,-43.8228,-50.8357,-0.63403,-42.0573,-41.4282,-48.7691,-2.57803,-44.0028,-43.3737,-41.6082,-51.0157,0,-41.4245,-40.7954,-39.03,-40.9754,-48.1364,-5.33652,-46.7611,-46.1321,-44.3665,-46.3121,-43.7338,-54.075,-10.9435,-52.3678,-51.7388,-49.9732,-51.9188,-49.3405,-54.6771,-60.2837,-10.9435,-52.3678,-51.7388,-49.9732,-51.9188,-49.3405,-54.6771,-60.2837,-60.2837,-10.9435,-52.3678,-51.7388,-49.9732,-51.9188,-49.3405,-54.6771,-60.2837,-60.2837,-60.2837 0|0:52:25,4,5,1,1,1,0,0,0,7:25:836:4,5,1,1,1,0,0,0,7:136,169,34,34,30,0,0,0,239:-11.8806,-9.01649,-74.5483,-5.70019,-62.0504,-70.9333,-16.6472,-72.994,-69.6799,-83.0808,-16.6472,-72.994,-69.6799,-80.6234,-83.0808,-17.008,-73.3542,-70.0402,-80.9836,-80.9836,-83.441,-19.4063,-75.7524,-72.4384,-83.3818,-83.3818,-83.742,-86.1402,-19.4063,-75.7524,-72.4384,-83.3818,-83.3818,-83.742,-86.1402,-86.1402,-19.4063,-75.7524,-72.4384,-83.3818,-83.3818,-83.742,-86.1402,-86.1402,-86.1402,0,-56.353,-53.0386,-63.9827,-63.9827,-64.3429,-66.7412,-66.7412,-66.7412,-64.634 0|0:50:13,1,7,0,0,1,4,4,4,9:13:433:1,7,0,0,1,4,4,4,9:34,236,0,0,35,139,139,134,292:-19.5627,-20.8755,-54.6843,-4.34469,-35.8561,-36.3493,-23.476,-54.9853,-38.4565,-57.5856,-23.476,-54.9853,-38.4565,-57.5856,-57.5856,-20.6273,-52.1368,-35.6079,-54.7372,-54.7372,-54.4362,-12.1706,-43.6813,-27.1518,-46.2817,-46.2817,-43.4331,-45.0776,-12.6985,-44.2086,-27.6793,-46.809,-46.809,-43.9605,-35.5047,-45.6049,-13.0026,-44.5125,-27.9833,-47.1129,-47.1129,-44.2644,-35.8086,-36.3361,-45.9088,0,-31.511,-14.981,-34.1114,-34.1114,-31.2628,-22.8066,-23.3343,-23.6383,-31.4021 dDocent_Contig_13668 32 . C A 238.599 . AB=0.0909091;ABP=34.9902;AC=0;AF=0;AN=6;AO=2;CIGAR=1M5I1X3M2D3M2X1M1X1M2X1M1X1M1X1M;DP=39;DPB=30.1818;DPRA=5.5;EPP=7.35324;EPPR=35.5824;GTI=0;LEN=1;MEANALT=8;MQM=40;MQMR=60;NS=3;NUMALT=5;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=79;QR=593;RO=15;RPL=0;RPP=7.35324;RPPR=35.5824;RPR=2;RUN=1;SAF=2;SAP=7.35324;SAR=0;SRF=15;SRP=35.5824;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|0:13:9,0,0,0,3,0:9:356:0,0,0,3,0:0,0,0,120,0:-7.17597,-9.88524,-39.1803,-9.88524,-39.1803,-39.1803,-9.88524,-39.1803,-39.1803,-39.1803,0,-29.2941,-29.2941,-29.2941,-28.391,-9.88524,-39.1803,-39.1803,-39.1803,-29.2941,-39.1803 0|0:4:0,0,0,0,0,2:0:0:0,0,0,0,2:0,0,0,0,82:-7.48756,-7.48756,-7.48756,-7.48756,-7.48756,-7.48756,-7.48756,-7.48756,-7.48756,-7.48756,-7.48756,-7.48756,-7.48756,-7.48756,-7.48756,-0.60206,-0.60206,-0.60206,-0.60206,-0.60206,0 0|0:22:6,2,5,2,1,1:6:237:2,5,2,1,1:78,192,79,39,41:-12.7174,-8.12371,-27.0305,0,-13.108,-18.001,-8.51631,-21.6255,-13.5004,-27.4222,-11.3168,-24.4262,-16.3002,-24.818,-30.5241,-11.1373,-24.247,-16.1208,-24.6388,-27.4396,-30.345 dDocent_Contig_13669 110 . A C 218.56 . AB=0.366667;ABP=7.64277;AC=2;AF=0.333333;AN=6;AO=12;CIGAR=1X1M;DP=44;DPB=44;DPRA=0;EPP=29.068;EPPR=65.983;GTI=0;LEN=1;MEANALT=1.66667;MQM=60;MQMR=58.6207;NS=3;NUMALT=2;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=406;QR=943;RO=29;RPL=0;RPP=29.068;RPPR=65.983;RPR=12;RUN=1;SAF=0;SAP=29.068;SAR=12;SRF=0;SRP=65.983;SRR=29;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|1:13:4,2,7:4:137:2,7:62,243:-18.5901,-15.0761,-25.4293,0,-6.27085,-8.87914 0|1:17:12,1,4:12:378:1,4:35,129:-6.78862,-7.78003,-37.8695,0,-27.7659,-29.183 0|0:14:13,0,1:13:428:0,1:0,34:0,-3.91339,-38.4968,-0.815509,-35.738,-35.437 dDocent_Contig_13672 18 . G A 396.14 . AB=0.482759;ABP=3.08518;AC=2;AF=0.333333;AN=6;AO=15;CIGAR=1X;DP=46;DPB=46;DPRA=0;EPP=35.5824;EPPR=70.3259;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=609;QR=1227;RO=31;RPL=0;RPP=35.5824;RPPR=70.3259;RPR=15;RUN=1;SAF=15;SAP=35.5824;SAR=0;SRF=31;SRP=70.3259;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:17:16,1:16:635:1:41:0,-1.02294,-53.388 0/1:21:12,9:12:472:9:366:-26.9829,0,-36.5072 0/1:8:3,5:3:120:5:202:-16.1538,0,-8.77907 dDocent_Contig_13673 20 . T C 69.3161 . AB=0.333333;ABP=5.18177;AC=1;AF=0.166667;AN=6;AO=3;CIGAR=1X;DP=37;DPB=37;DPRA=0.642857;EPP=9.52472;EPPR=76.8404;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=123;QR=1314;RO=34;RPL=0;RPP=9.52472;RPPR=76.8404;RPR=3;RUN=1;SAF=3;SAP=9.52472;SAR=0;SRF=34;SRP=76.8404;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:15:15,0:15:593:0:0:0,-4.51545,-53.7086 0/1:9:6,3:6:235:3:123:-8.75552,0,-18.8098 0/0:13:13,0:13:486:0:0:0,-3.91339,-44.0683 dDocent_Contig_13674 83 . T A 32.2386 . AB=0.4;ABP=3.44459;AC=1;AF=0.166667;AN=6;AO=2;CIGAR=1X;DP=33;DPB=33;DPRA=0.357143;EPP=7.35324;EPPR=70.3259;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=8.67362e-19;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=69;QR=1098;RO=31;RPL=2;RPP=7.35324;RPPR=70.3259;RPR=0;RUN=1;SAF=2;SAP=7.35324;SAR=0;SRF=31;SRP=70.3259;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:14:14,0:14:502:0:0:0,-4.21442,-45.5173 0/0:14:14,0:14:491:0:0:0,-4.21442,-44.5229 0/1:5:3,2:3:105:2:69:-5.04751,0,-8.29101 dDocent_Contig_13675 8 . G A 175.499 . AB=0.333333;ABP=4.45795;AC=1;AF=0.166667;AN=6;AO=2;CIGAR=1X1M1X1M6I2M;DP=26;DPB=29.3333;DPRA=0;EPP=7.35324;EPPR=29.068;GTI=0;LEN=1;MEANALT=2;MQM=32;MQMR=60;NS=3;NUMALT=2;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=64;QR=472;RO=12;RPL=0;RPP=7.35324;RPPR=29.068;RPR=2;RUN=1;SAF=2;SAP=7.35324;SAR=0;SRF=12;SRP=29.068;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|0:9:6,0,2:6:237:0,2:0,68:-3.26988,-5.07606,-24.6687,0,-19.7038,-19.1018 1|0:6:0,2,4:0:0:2,4:64,100:-11.5743,-6.93461,-6.33255,-4.90624,0,-3.70212 0|0:11:6,0,4:6:235:0,4:0,131:-8.21815,-10.0243,-29.3971,0,-19.4285,-18.2244 dDocent_Contig_13678 82 . T C 88.4776 . AB=0.4;ABP=3.87889;AC=1;AF=0.166667;AN=6;AO=4;CIGAR=1X;DP=39;DPB=39;DPRA=0.689655;EPP=11.6962;EPPR=79.0118;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=148;QR=1336;RO=35;RPL=4;RPP=11.6962;RPPR=79.0118;RPR=0;RUN=1;SAF=4;SAP=11.6962;SAR=0;SRF=35;SRP=79.0118;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:18:18,0:18:698:0:0:0,-5.41854,-63.154 0/0:11:11,0:11:416:0:0:0,-3.31133,-37.7878 0/1:10:6,4:6:222:4:148:-10.6717,0,-17.3278 dDocent_Contig_13679 10 . C T 280.397 . AB=0.0555556;ABP=95.6598;AC=0;AF=0;AN=6;AO=3;CIGAR=1X2M1X1M;DP=198;DPB=216;DPRA=0.514286;EPP=9.52472;EPPR=361.303;GTI=0;LEN=1;MEANALT=3;MQM=60;MQMR=60;NS=3;NUMALT=4;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=114;QR=6553;RO=165;RPL=0;RPP=9.52472;RPPR=361.303;RPR=3;RUN=1;SAF=3;SAP=9.52472;SAR=0;SRF=165;SRP=361.303;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|0:105:97,0,0,8,0:97:3838:0,0,8,0:0,0,326,0:0,-29.1999,-345.046,-29.1999,-345.046,-345.046,-1.89828,-318.151,-318.151,-315.742,-29.1999,-345.046,-345.046,-318.151,-345.046 0|0:39:28,0,0,8,3:28:1119:0,0,8,3:0,0,310,110:-17.0524,-25.4812,-117.664,-25.4812,-117.664,-117.664,0,-92.2,-92.2,-89.7918,-16.4991,-108.679,-108.679,-83.2154,-107.776 0|0:54:40,3,3,8,0:40:1596:3,3,8,0:114,114,322,0:-14.5102,-17.2066,-147.746,-17.2059,-139.301,-147.746,0,-122.11,-122.109,-129.049,-26.5514,-148.649,-148.649,-131.457,-157.997 dDocent_Contig_13680 10 . C A 4791.95 . AB=0.508929;ABP=3.16541;AC=3;AF=0.5;AN=6;AO=114;CIGAR=1X3M1X;DP=224;DPB=224;DPRA=0;EPP=250.558;EPPR=61.6401;GTI=0;LEN=1;MEANALT=2.33333;MQM=37.2632;MQMR=60;NS=3;NUMALT=2;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=4502;QR=1086;RO=27;RPL=0;RPP=250.558;RPPR=61.6401;RPR=114;RUN=1;SAF=114;SAP=250.558;SAR=0;SRF=27;SRP=61.6401;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 1|0:121:17,78,26:17:683:78,26:3087,1023:-230.149,-27.8524,-60.6574,-151.108,0,-199.576 1|0:29:2,3,23:2:80:3,23:117,922:-77.8129,-69.37,-75.057,-2.43506,0,-2.10928 1|0:74:8,33,33:8:323:33,33:1298,1322:-176.655,-82.2788,-98.9729,-70.1337,0,-86.8357 dDocent_Contig_13681 38 . G C 75.2474 . AB=0.16129;ABP=33.9012;AC=1;AF=0.166667;AN=6;AO=5;CIGAR=1X;DP=62;DPB=62;DPRA=2;EPP=13.8677;EPPR=126.784;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=200;QR=2280;RO=57;RPL=0;RPP=13.8677;RPPR=126.784;RPR=5;RUN=1;SAF=5;SAP=13.8677;SAR=0;SRF=57;SRP=126.784;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:31:26,5:26:1043:5:200:-9.04761,0,-84.8317 0/0:8:8,0:8:315:0:0:0,-2.40824,-28.7138 0/0:23:23,0:23:922:0:0:0,-6.92369,-83.2862 dDocent_Contig_13682 98 . N G 107.913 . AB=0;ABP=0;AC=2;AF=1;AN=2;AO=3;CIGAR=1X4I3X2I6X;DP=3;DPB=4.8;DPRA=0;EPP=9.52472;EPPR=0;GTI=0;LEN=1;MEANALT=1;MQM=54;MQMR=0;NS=1;NUMALT=1;ODDS=6.68461;PAIRED=1;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=116;QR=0;RO=0;RPL=0;RPP=9.52472;RPPR=0;RPR=3;RUN=1;SAF=3;SAP=9.52472;SAR=0;SRF=0;SRP=0;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL .:.:.:.:.:.:.:. 1|1:3:0,3:0:0:3:116:-10.7907,-0.90309,0 .:.:.:.:.:.:.:. dDocent_Contig_13683 15 . G A 112.02 . AB=0;ABP=0;AC=4;AF=0.666667;AN=6;AO=3;CIGAR=1X;DP=7;DPB=7;DPRA=0.375;EPP=9.52472;EPPR=11.6962;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=0;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=111;QR=163;RO=4;RPL=0;RPP=9.52472;RPPR=11.6962;RPR=3;RUN=1;SAF=3;SAP=9.52472;SAR=0;SRF=4;SRP=11.6962;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:4:4,0:4:163:0:0:0,-1.20412,-15.0584 1/1:2:0,2:0:0:2:74:-7.02588,-0.60206,0 1/1:1:0,1:0:0:1:37:-3.69783,-0.30103,0 dDocent_Contig_13685 12 . A G 252.094 . AB=0.366667;ABP=7.64277;AC=3;AF=0.5;AN=6;AO=11;CIGAR=1X;DP=30;DPB=30;DPRA=0;EPP=26.8965;EPPR=44.2683;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=3.46945e-18;PAIRED=0;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=429;QR=739;RO=19;RPL=0;RPP=26.8965;RPPR=44.2683;RPR=11;RUN=1;SAF=11;SAP=26.8965;SAR=0;SRF=19;SRP=44.2683;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:15:10,5:10:390:5:205:-14.3196,0,-30.9373 0/1:4:3,1:3:119:1:38:-2.59315,0,-9.89089 0/1:11:6,5:6:230:5:186:-13.7842,0,-17.7547 dDocent_Contig_13687 16 . T C 553.071 . AB=0.5;ABP=3.0103;AC=3;AF=0.5;AN=6;AO=20;CIGAR=1X;DP=40;DPB=40;DPRA=0;EPP=46.4397;EPPR=46.4397;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=787;QR=789;RO=20;RPL=0;RPP=46.4397;RPPR=46.4397;RPR=20;RUN=1;SAF=20;SAP=46.4397;SAR=0;SRF=20;SRP=46.4397;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:24:8,16:8:302:16:629:-49.709,0,-20.3041 0/1:6:3,3:3:121:3:117:-9.10373,0,-9.47402 0/1:10:9,1:9:366:1:41:-1.08427,0,-30.2949 dDocent_Contig_13688 7 . A G 75.7997 . AB=0;ABP=0;AC=2;AF=0.333333;AN=6;AO=2;CIGAR=1X;DP=26;DPB=26;DPRA=0.166667;EPP=7.35324;EPPR=55.1256;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=78;QR=932;RO=24;RPL=0;RPP=7.35324;RPPR=55.1256;RPR=2;RUN=1;SAF=2;SAP=7.35324;SAR=0;SRF=24;SRP=55.1256;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:19:19,0:19:738:0:0:0,-5.71957,-66.7511 1/1:2:0,2:0:0:2:78:-7.40347,-0.60206,0 0/0:5:5,0:5:194:0:0:0,-1.50515,-17.8328 dDocent_Contig_13689 11 . C T 505.628 . AB=0.392857;ABP=5.80219;AC=4;AF=0.666667;AN=6;AO=17;CIGAR=1X;DP=34;DPB=34;DPRA=0;EPP=39.9253;EPPR=39.9253;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=1.73472e-18;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=682;QR=683;RO=17;RPL=0;RPP=39.9253;RPPR=39.9253;RPR=17;RUN=1;SAF=17;SAP=39.9253;SAR=0;SRF=17;SRP=39.9253;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:19:10,9:10:403:9:360:-27.0427,0,-30.9099 0/1:9:7,2:7:280:2:81:-4.97646,0,-22.8623 1/1:6:0,6:0:0:6:241:-22.0663,-1.80618,0 dDocent_Contig_13690 32 . C T 84.5277 . AB=0.185185;ABP=26.2531;AC=2;AF=0.333333;AN=6;AO=5;CIGAR=1X;DP=50;DPB=50;DPRA=0.586957;EPP=13.8677;EPPR=100.727;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=201;QR=1793;RO=45;RPL=0;RPP=13.8677;RPPR=100.727;RPR=5;RUN=1;SAF=5;SAP=13.8677;SAR=0;SRF=45;SRP=100.727;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:16:12,4:12:486:4:160:-9.96695,0,-39.2754 0/1:11:10,1:10:404:1:41:-0.783237,0,-33.4087 0/0:23:23,0:23:903:0:0:0,-6.92369,-81.5754 dDocent_Contig_13691 8 . G A 582.857 . AB=0.288889;ABP=37.8504;AC=3;AF=0.5;AN=6;AO=26;CIGAR=1X;DP=90;DPB=90;DPRA=0;EPP=59.4686;EPPR=141.985;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=0.9375;PAO=0;PQA=0;PQR=0;PRO=0;QA=998;QR=2427;RO=64;RPL=0;RPP=59.4686;RPPR=141.985;RPR=26;RUN=1;SAF=26;SAP=59.4686;SAR=0;SRF=64;SRP=141.985;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:51:35,16:35:1316:16:612:-40.0663,0,-103.372 0/1:10:6,4:6:234:4:154:-11.2232,0,-18.4208 0/1:29:23,6:23:877:6:232:-12.5191,0,-70.5195 dDocent_Contig_13692 29 . G C 62.3799 . AB=0.272727;ABP=7.94546;AC=1;AF=0.166667;AN=6;AO=3;CIGAR=1X;DP=28;DPB=28;DPRA=1.29412;EPP=9.52472;EPPR=57.2971;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=0;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=122;QR=1004;RO=25;RPL=0;RPP=9.52472;RPPR=57.2971;RPR=3;RUN=1;SAF=3;SAP=9.52472;SAR=0;SRF=25;SRP=57.2971;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:16:16,0:16:647:0:0:0,-4.81648,-58.5635 0/1:11:8,3:8:317:3:122:-8.06116,0,-25.5798 0/0:1:1,0:1:40:0:0:0,-0.30103,-3.99568 dDocent_Contig_13693 39 . C T 107.484 . AB=0.3;ABP=9.95901;AC=1;AF=0.166667;AN=6;AO=7;CIGAR=1X;DP=45;DPB=45;DPRA=2.3125;EPP=18.2106;EPPR=85.5263;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=0.973684;PAO=0;PQA=0;PQR=0;PRO=0;QA=242;QR=1533;RO=38;RPL=0;RPP=18.2106;RPPR=85.5263;RPR=7;RUN=1;SAF=7;SAP=18.2106;SAR=0;SRF=38;SRP=85.5263;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:17:16,1:16:648:1:39:0,-1.22095,-54.7575 0/1:20:14,6:14:563:6:203:-12.5722,0,-44.9925 0/0:8:8,0:8:322:0:0:0,-2.40824,-29.3478 dDocent_Contig_13694 7 . A G 72.0237 . AB=0;ABP=0;AC=2;AF=0.333333;AN=6;AO=3;CIGAR=1X;DP=42;DPB=42;DPRA=0.454545;EPP=9.52472;EPPR=87.6977;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=113;QR=1449;RO=39;RPL=0;RPP=9.52472;RPPR=87.6977;RPR=3;RUN=1;SAF=3;SAP=9.52472;SAR=0;SRF=39;SRP=87.6977;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:18:17,1:17:638:1:39:0,-1.52198,-53.8554 0/0:22:22,0:22:811:0:0:0,-6.62266,-73.3059 1/1:2:0,2:0:0:2:74:-7.02588,-0.60206,0 dDocent_Contig_13695 4 . T A 127.178 . AB=0;ABP=0;AC=4;AF=1;AN=4;AO=4;CIGAR=5I1X2M1X;DP=7;DPB=12;DPRA=2.5;EPP=11.6962;EPPR=0;GTI=0;LEN=1;MEANALT=2;MQM=60;MQMR=0;NS=2;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=139;QR=0;RO=0;RPL=0;RPP=11.6962;RPPR=0;RPR=4;RUN=1;SAF=4;SAP=11.6962;SAR=0;SRF=0;SRP=0;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 1|1:2:0,0:0:0:0:0:0,0,0 .:.:.:.:.:.:.:. 1|1:5:0,4:0:0:4:139:-12.5401,-1.20412,0 dDocent_Contig_13696 37 . T C 734.41 . AB=0.415385;ABP=7.05258;AC=2;AF=0.333333;AN=6;AO=27;CIGAR=1X;DP=68;DPB=68;DPRA=10.8333;EPP=61.6401;EPPR=92.0407;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=1065;QR=1592;RO=41;RPL=0;RPP=61.6401;RPPR=92.0407;RPR=27;RUN=1;SAF=27;SAP=61.6401;SAR=0;SRF=41;SRP=92.0407;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:45:25,20:25:975:20:793:-58.1404,0,-74.507 0/0:3:3,0:3:120:0:0:0,-0.90309,-11.1877 0/1:20:13,7:13:497:7:272:-18.8233,0,-39.0547 dDocent_Contig_13697 38 . A G 277.597 . AB=0.175824;ABP=86.0751;AC=2;AF=0.333333;AN=6;AO=16;CIGAR=1X;DP=97;DPB=97;DPRA=7.58333;EPP=37.7539;EPPR=176.728;GTI=0;LEN=1;MEANALT=1.5;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=642;QR=3146;RO=80;RPL=0;RPP=37.7539;RPPR=176.728;RPR=16;RUN=1;SAF=16;SAP=37.7539;SAR=0;SRF=80;SRP=176.728;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:49:43,5:43:1677:5:196:-3.4248,0,-136.619 0/0:6:6,0:6:244:0:0:0,-1.80618,-22.3388 0/1:42:31,11:31:1225:11:446:-27.8523,0,-97.8794 dDocent_Contig_13698 71 . G A 154.093 . AB=0.35;ABP=6.91895;AC=2;AF=0.333333;AN=6;AO=7;CIGAR=1X;DP=27;DPB=27;DPRA=1.42857;EPP=18.2106;EPPR=46.4397;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=269;QR=762;RO=20;RPL=7;RPP=18.2106;RPPR=46.4397;RPR=0;RUN=1;SAF=7;SAP=18.2106;SAR=0;SRF=20;SRP=46.4397;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:7:7,0:7:273:0:0:0,-2.10721,-24.9336 0/1:11:9,2:9:335:2:74:-3.71444,0,-27.1853 0/1:9:4,5:4:154:5:195:-15.2149,0,-11.5242 dDocent_Contig_13699 25 . A G 426.047 . AB=0.535714;ABP=3.32051;AC=2;AF=0.333333;AN=6;AO=15;CIGAR=1X;DP=34;DPB=34;DPRA=2.33333;EPP=35.5824;EPPR=44.2683;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=1.73472e-18;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=598;QR=772;RO=19;RPL=0;RPP=35.5824;RPPR=44.2683;RPR=15;RUN=1;SAF=15;SAP=35.5824;SAR=0;SRF=19;SRP=44.2683;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:10:3,7:3:122:7:278:-22.3781,0,-8.36219 0/1:18:10,8:10:407:8:320:-23.7495,0,-31.5719 0/0:6:6,0:6:243:0:0:0,-1.80618,-22.2476 dDocent_Contig_13700 20 . C A 1032.32 . AB=0.435294;ABP=6.10145;AC=3;AF=0.5;AN=6;AO=37;CIGAR=1X;DP=85;DPB=85;DPRA=0;EPP=83.3548;EPPR=107.241;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=1481;QR=1927;RO=48;RPL=0;RPP=83.3548;RPPR=107.241;RPR=37;RUN=1;SAF=37;SAP=83.3548;SAR=0;SRF=48;SRP=107.241;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:44:24,20:24:959:20:802:-59.2459,0,-73.3602 0/1:13:11,2:11:446:2:82:-3.86629,0,-36.5828 0/1:28:13,15:13:522:15:597:-45.6408,0,-38.8978 dDocent_Contig_13701 8 . G A 73.7561 . AB=0;ABP=0;AC=2;AF=0.333333;AN=6;AO=2;CIGAR=1X2M1X1M1X2M1X3M3D1M1X;DP=35;DPB=34.6471;DPRA=0.121212;EPP=7.35324;EPPR=74.6689;GTI=0;LEN=1;MEANALT=1;MQM=43;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=0;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=79;QR=1289;RO=33;RPL=0;RPP=7.35324;RPPR=74.6689;RPR=2;RUN=1;SAF=2;SAP=7.35324;SAR=0;SRF=33;SRP=74.6689;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|0:21:21,0:21:817:0:0:0,-6.32163,-73.8494 1|1:2:0,2:0:0:2:79:-7.19915,-0.60206,0 0|0:12:12,0:12:472:0:0:0,-3.61236,-42.8302 dDocent_Contig_13702 107 . N G 806.36 . AB=0;ABP=0;AC=6;AF=1;AN=6;AO=24;CIGAR=1X;DP=24;DPB=24;DPRA=0;EPP=55.1256;EPPR=0;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=0;NS=3;NUMALT=1;ODDS=0;PAIRED=0.25;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=879;QR=0;RO=0;RPL=0;RPP=55.1256;RPPR=0;RPR=24;RUN=1;SAF=0;SAP=55.1256;SAR=24;SRF=0;SRP=0;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 1/1:14:0,14:0:0:14:517:-46.8721,-4.21442,0 1/1:5:0,5:0:0:5:178:-16.3682,-1.50515,0 1/1:5:0,5:0:0:5:184:-16.9184,-1.50515,0 dDocent_Contig_13703 39 . A G 189.763 . AB=0.0333333;ABP=286.749;AC=0;AF=0;AN=6;AO=5;CIGAR=1M2X3M;DP=150;DPB=148.667;DPRA=0;EPP=13.8677;EPPR=263.587;GTI=0;LEN=1;MEANALT=3;MQM=55;MQMR=60;NS=3;NUMALT=3;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=177;QR=4693;RO=120;RPL=5;RPP=13.8677;RPPR=263.587;RPR=0;RUN=1;SAF=5;SAP=13.8677;SAR=0;SRF=120;SRP=263.587;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|0:75:62,5,2,6:62:2426:5,2,6:197,81,236:-0.746777,-3.20359,-201.159,-12.7485,-196.003,-211.609,0,-183.251,-192.799,-197.653 0|0:29:23,3,2,1:23:886:3,2,1:119,56,41:-2.90909,0,-71.8982,-5.44463,-68.3813,-77.5765,-6.43871,-69.416,-74.7936,-78.9131 0|0:46:35,0,1,9:35:1381:0,1,9:0,40,365:-19.5649,-30.101,-143.719,-26.8148,-140.432,-140.131,0,-113.617,-110.33,-110.908 dDocent_Contig_13704 23 . T A 326.605 . AB=0.183673;ABP=88.1852;AC=1;AF=0.166667;AN=6;AO=34;CIGAR=1X;DP=360;DPB=360;DPRA=0;EPP=76.8404;EPPR=710.91;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=1325;QR=12849;RO=326;RPL=0;RPP=76.8404;RPPR=710.91;RPR=34;RUN=1;SAF=34;SAP=76.8404;SAR=0;SRF=326;SRP=710.91;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:98:80,18:80:3170:18:704:-34.1834,0,-255.876 0/0:183:170,13:170:6651:13:503:0,-9.47756,-552.756 0/0:79:76,3:76:3028:3:118:0,-12.7789,-261.616 dDocent_Contig_13705 81 . C T 766.865 . AB=0.201923;ABP=83.2713;AC=0;AF=0;AN=6;AO=21;CIGAR=1X3M1X;DP=104;DPB=104;DPRA=0;EPP=48.6112;EPPR=105.07;GTI=0;LEN=1;MEANALT=2;MQM=60;MQMR=60;NS=3;NUMALT=2;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=738;QR=1628;RO=47;RPL=21;RPP=48.6112;RPPR=105.07;RPR=0;RUN=1;SAF=21;SAP=48.6112;SAR=0;SRF=47;SRP=105.07;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|0:62:32,14,16:32:1119:14,16:490,531:-33.3117,-3.07,-89.903,0,-51.169,-86.2188 0|0:16:6,3,7:6:205:3,7:107,223:-16.1249,-9.19706,-24.9419,0,-7.89977,-14.5201 0|0:26:9,4,13:9:304:4,13:141,438:-32.7726,-23.9976,-47.4353,0,-13.1461,-20.7179 dDocent_Contig_13708 15 . T A 462.318 . AB=0.485714;ABP=3.07234;AC=2;AF=0.333333;AN=6;AO=17;CIGAR=1X;DP=48;DPB=48;DPRA=1.34615;EPP=39.9253;EPPR=70.3259;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=3.46945e-18;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=662;QR=1117;RO=31;RPL=0;RPP=39.9253;RPPR=70.3259;RPR=17;RUN=1;SAF=17;SAP=39.9253;SAR=0;SRF=31;SRP=70.3259;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:21:13,8:13:481:8:311:-22.027,0,-37.304 0/1:14:5,9:5:151:9:351:-27.7277,0,-9.6718 0/0:13:13,0:13:485:0:0:0,-3.91339,-43.9861 dDocent_Contig_13711 11 . T G 1933.91 . AB=0.570175;ABP=7.88659;AC=3;AF=0.5;AN=6;AO=65;CIGAR=1X;DP=114;DPB=114;DPRA=0;EPP=144.156;EPPR=109.412;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=0.953846;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=2581;QR=1968;RO=49;RPL=0;RPP=144.156;RPPR=109.412;RPR=65;RUN=1;SAF=65;SAP=144.156;SAR=0;SRF=49;SRP=109.412;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:83:32,51:32:1289:51:2012:-156.289,0,-91.29 0/1:3:1,2:1:41:2:79:-6.59415,0,-3.19148 0/1:28:16,12:16:638:12:490:-36.0221,0,-49.3253 dDocent_Contig_13712 68 . A G 276.885 . AB=0.541667;ABP=3.37221;AC=2;AF=0.333333;AN=6;AO=14;CIGAR=1X;DP=48;DPB=48;DPRA=0;EPP=33.4109;EPPR=76.8404;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=454;QR=1183;RO=34;RPL=14;RPP=33.4109;RPPR=76.8404;RPR=0;RUN=1;SAF=14;SAP=33.4109;SAR=0;SRF=34;SRP=76.8404;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:24:23,1:23:807:1:34:0,-3.82581,-69.5507 0/1:11:4,7:4:143:7:224:-17.1627,0,-9.91011 0/1:13:7,6:7:233:6:196:-14.0488,0,-17.383 dDocent_Contig_13713 8 . G A 278.013 . AB=0.307692;ABP=15.538;AC=2;AF=0.333333;AN=6;AO=12;CIGAR=1X;DP=66;DPB=66;DPRA=0.722222;EPP=29.068;EPPR=120.27;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=461;QR=2062;RO=54;RPL=0;RPP=29.068;RPPR=120.27;RPR=12;RUN=1;SAF=12;SAP=29.068;SAR=0;SRF=54;SRP=120.27;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:30:19,11:19:736:11:422:-29.3025,0,-57.5404 0/0:27:27,0:27:1019:0:0:0,-8.12781,-92.0196 0/1:9:8,1:8:307:1:39:-1.18729,0,-25.2819 dDocent_Contig_13716 38 . A G 136.095 . AB=0.233333;ABP=21.5402;AC=2;AF=0.333333;AN=6;AO=7;CIGAR=1X;DP=34;DPB=34;DPRA=3.75;EPP=18.2106;EPPR=61.6401;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=282;QR=1066;RO=27;RPL=0;RPP=18.2106;RPPR=61.6401;RPR=7;RUN=1;SAF=7;SAP=18.2106;SAR=0;SRF=27;SRP=61.6401;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:14:12,2:12:480:2:82:-3.56526,0,-39.3375 0/0:4:4,0:4:159:0:0:0,-1.20412,-14.6917 0/1:16:11,5:11:427:5:200:-13.5631,0,-33.9591 dDocent_Contig_13717 50 . T C 63.3008 . AB=0.173913;ABP=24.253;AC=1;AF=0.166667;AN=6;AO=4;CIGAR=1X;DP=43;DPB=43;DPRA=2.3;EPP=3.0103;EPPR=57.2971;GTI=0;LEN=1;MEANALT=2;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=0;PAIREDR=0.638889;PAO=0;PQA=0;PQR=0;PRO=0;QA=161;QR=1419;RO=36;RPL=4;RPP=11.6962;RPPR=81.1833;RPR=0;RUN=1;SAF=2;SAP=3.0103;SAR=2;SRF=33;SRP=57.2971;SRR=3;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:23:18,4:18:698:4:161:-7.85291,0,-56.1229 0/0:6:5,0:5:204:0:0:0,-1.50515,-18.4426 0/0:14:13,0:13:517:0:0:0,-3.91339,-46.5153 dDocent_Contig_13718 98 . N T 166.462 . AB=0;ABP=0;AC=4;AF=1;AN=4;AO=5;CIGAR=2X;DP=5;DPB=5;DPRA=0;EPP=13.8677;EPPR=0;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=0;NS=2;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=174;QR=0;RO=0;RPL=5;RPP=13.8677;RPPR=0;RPR=0;RUN=1;SAF=5;SAP=13.8677;SAR=0;SRF=0;SRP=0;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL .:.:.:.:.:.:.:. 1|1:4:0,4:0:0:4:140:-12.9449,-1.20412,0 1|1:1:0,1:0:0:1:34:-3.39891,-0.30103,0 dDocent_Contig_13719 20 . G A 86.825 . AB=0.318182;ABP=9.32731;AC=2;AF=0.333333;AN=6;AO=9;CIGAR=1X;DP=49;DPB=49;DPRA=0;EPP=22.5536;EPPR=89.8692;GTI=0;LEN=1;MEANALT=1;MQM=29.3333;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=0;PAIREDR=0.95;PAO=0;PQA=0;PQR=0;PRO=0;QA=367;QR=1606;RO=40;RPL=0;RPP=22.5536;RPPR=89.8692;RPR=9;RUN=1;SAF=9;SAP=22.5536;SAR=0;SRF=40;SRP=89.8692;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:27:25,2:25:997:2:82:0,-2.66824,-84.5637 0/1:10:8,2:8:326:2:81:-1.80304,0,-26.6996 0/1:12:7,5:7:283:5:204:-10.423,0,-22.2306 dDocent_Contig_13720 45 . T C 35.1279 . AB=0.333333;ABP=4.45795;AC=1;AF=0.166667;AN=6;AO=2;CIGAR=2X2M1X;DP=35;DPB=35;DPRA=0.413793;EPP=7.35324;EPPR=72.4974;GTI=0;LEN=1;MEANALT=2;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=76;QR=1253;RO=32;RPL=0;RPP=7.35324;RPPR=72.4974;RPR=2;RUN=1;SAF=2;SAP=7.35324;SAR=0;SRF=32;SRP=72.4974;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|0:13:13,0:13:513:0:0:0,-3.91339,-46.5187 0|1:6:3,2:3:117:2:76:-5.33656,0,-9.0298 0|0:16:16,0:16:623:0:0:0,-4.81648,-56.4074 dDocent_Contig_13721 7 . A C 420.883 . AB=0.434783;ABP=4.70971;AC=2;AF=0.333333;AN=6;AO=21;CIGAR=1X;DP=62;DPB=62;DPRA=0;EPP=48.6112;EPPR=89.8692;GTI=0;LEN=1;MEANALT=1.33333;MQM=43.4762;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=0.47619;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=811;QR=1511;RO=40;RPL=0;RPP=48.6112;RPPR=89.8692;RPR=21;RUN=1;SAF=21;SAP=48.6112;SAR=0;SRF=40;SRP=89.8692;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:40:22,17:22:825:17:657:-36.6923,0,-62.7114 0/1:6:3,3:3:116:3:115:-8.91871,0,-9.01152 0/0:16:15,1:15:570:1:39:0,-0.919915,-47.745 dDocent_Contig_13722 12 . C T 287.581 . AB=0.333333;ABP=11.6962;AC=1;AF=0.166667;AN=6;AO=12;CIGAR=1X;DP=69;DPB=69;DPRA=2.18182;EPP=29.068;EPPR=126.784;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=59.5789;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=0.491228;PAO=0;PQA=0;PQR=0;PRO=0;QA=453;QR=2244;RO=57;RPL=0;RPP=29.068;RPPR=126.784;RPR=12;RUN=1;SAF=12;SAP=29.068;SAR=0;SRF=57;SRP=126.784;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:36:24,12:24:949:12:453:-30.281,0,-74.8723 0/0:7:7,0:7:283:0:0:0,-2.10721,-25.8432 0/0:26:26,0:26:1012:0:0:0,-7.82678,-91.2939 dDocent_Contig_13723 19 . T A 189.556 . AB=0.257143;ABP=20.9405;AC=1;AF=0.166667;AN=6;AO=9;CIGAR=1X;DP=85;DPB=85;DPRA=1.4;EPP=22.5536;EPPR=168.042;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=344;QR=2904;RO=76;RPL=0;RPP=22.5536;RPPR=168.042;RPR=9;RUN=1;SAF=9;SAP=22.5536;SAR=0;SRF=76;SRP=168.042;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:33:33,0:33:1264:0:0:0,-9.93399,-114.044 0/0:17:17,0:17:652:0:0:0,-5.11751,-59.0114 0/1:35:26,9:26:988:9:344:-20.7795,0,-78.6875 dDocent_Contig_13724 22 . G A 369.618 . AB=0.4;ABP=6.05036;AC=2;AF=0.333333;AN=6;AO=14;CIGAR=1X;DP=40;DPB=40;DPRA=3.5;EPP=33.4109;EPPR=59.4686;GTI=0;LEN=1;MEANALT=1;MQM=59.1429;MQMR=60;NS=3;NUMALT=1;ODDS=3.46945e-18;PAIRED=0.928571;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=559;QR=1029;RO=26;RPL=0;RPP=33.4109;RPPR=59.4686;RPR=14;RUN=1;SAF=14;SAP=33.4109;SAR=0;SRF=26;SRP=59.4686;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:31:18,13:18:724:13:519:-37.6703,0,-56.154 0/1:4:3,1:3:113:1:40:-2.79156,0,-9.3319 0/0:5:5,0:5:192:0:0:0,-1.50515,-17.6477 dDocent_Contig_13725 15 . G A 552.903 . AB=0.265957;ABP=47.7334;AC=3;AF=0.5;AN=6;AO=25;CIGAR=1X;DP=94;DPB=94;DPRA=0;EPP=57.2971;EPPR=152.842;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=978;QR=2739;RO=69;RPL=0;RPP=57.2971;RPPR=152.842;RPR=25;RUN=1;SAF=25;SAP=57.2971;SAR=0;SRF=69;SRP=152.842;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:28:23,5:23:902:5:198:-9.76854,0,-73.0488 0/1:43:26,17:26:1034:17:660:-46.7803,0,-80.4082 0/1:23:20,3:20:803:3:120:-4.26362,0,-65.6641 dDocent_Contig_13726 16 . T C 2380.53 . AB=0.332103;ABP=69.3644;AC=3;AF=0.5;AN=6;AO=90;CIGAR=1X;DP=271;DPB=271;DPRA=0;EPP=198.443;EPPR=396.047;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=0.917127;PAO=0;PQA=0;PQR=0;PRO=0;QA=3604;QR=7275;RO=181;RPL=0;RPP=198.443;RPPR=396.047;RPR=90;RUN=1;SAF=90;SAP=198.443;SAR=0;SRF=181;SRP=396.047;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:179:115,64:115:4613:64:2578:-178.259,0,-361.195 0/1:23:15,8:15:595:8:310:-21.329,0,-46.9597 0/1:69:51,18:51:2067:18:716:-43.9884,0,-165.436 dDocent_Contig_13728 8 . G T 46.6489 . AB=0.230769;ABP=11.1951;AC=1;AF=0.166667;AN=6;AO=3;CIGAR=1X;DP=27;DPB=27;DPRA=1.85714;EPP=9.52472;EPPR=55.1256;GTI=0;LEN=1;MEANALT=1;MQM=48;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=0;PAIREDR=0.833333;PAO=0;PQA=0;PQR=0;PRO=0;QA=115;QR=931;RO=24;RPL=0;RPP=9.52472;RPPR=55.1256;RPR=3;RUN=1;SAF=3;SAP=9.52472;SAR=0;SRF=24;SRP=55.1256;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:11:11,0:11:427:0:0:0,-3.31133,-38.785 0/0:3:3,0:3:114:0:0:0,-0.90309,-10.6322 0/1:13:10,3:10:390:3:115:-6.48861,0,-31.5453 dDocent_Contig_13729 7 . A G 52.8503 . AB=0.190476;ABP=20.4855;AC=1;AF=0.166667;AN=6;AO=5;CIGAR=1X2M6I1M1X1M2X;DP=37;DPB=40.75;DPRA=5.66667;EPP=13.8677;EPPR=72.4974;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=0;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=179;QR=1230;RO=32;RPL=0;RPP=13.8677;RPPR=72.4974;RPR=5;RUN=1;SAF=5;SAP=13.8677;SAR=0;SRF=32;SRP=72.4974;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|1:21:17,4:17:666:4:142:-6.80684,0,-53.9539 0|0:13:12,1:12:453:1:37:0,-0.215561,-37.417 0|0:3:3,0:3:111:0:0:0,-0.90309,-10.3532 dDocent_Contig_13730 196 . A T 481.254 . AB=0.2;ABP=34.2795;AC=4;AF=0.666667;AN=6;AO=20;CIGAR=1X;DP=53;DPB=53;DPRA=0;EPP=46.4397;EPPR=72.4974;GTI=0;LEN=1;MEANALT=1.33333;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=0;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=695;QR=1176;RO=32;RPL=20;RPP=46.4397;RPPR=72.4974;RPR=0;RUN=1;SAF=0;SAP=46.4397;SAR=20;SRF=0;SRP=72.4974;SRR=32;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:22:16,6:16:576:6:214:-12.9836,0,-45.5429 1/1:13:0,12:0:0:12:405:-36.5824,-3.61236,0 0/1:18:16,2:16:600:2:76:-1.79613,0,-48.9189 dDocent_Contig_13731 8 . G A 625.629 . AB=0.184783;ABP=161.811;AC=3;AF=0.5;AN=6;AO=34;CIGAR=1X1M;DP=184;DPB=184;DPRA=0;EPP=76.8404;EPPR=280.959;GTI=0;LEN=1;MEANALT=3;MQM=59.6471;MQMR=59.9062;NS=3;NUMALT=3;ODDS=0;PAIRED=0.323529;PAIREDR=0.460938;PAO=0;PQA=0;PQR=0;PRO=0;QA=1300;QR=4876;RO=128;RPL=0;RPP=76.8404;RPPR=280.959;RPR=34;RUN=1;SAF=34;SAP=76.8404;SAR=0;SRF=128;SRP=280.959;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|1:73:50,7,2,14:50:1908:7,2,14:271,77,544:-29.5992,-22.3886,-176.814,-38.3285,-172.599,-194.26,0,-134.27,-150.211,-152.319 0|1:46:29,3,3,9:29:1100:3,3,9:110,117,346:-19.6791,-19.4209,-108.71,-18.7896,-99.9945,-108.082,0,-81.2059,-80.5775,-87.4868 0|1:65:49,5,0,11:49:1868:5,0,11:191,0,410:-18.8075,-17.9551,-169.68,-33.558,-171.185,-186.785,0,-137.623,-153.224,-149.912 dDocent_Contig_13732 82 . G A 251.568 . AB=0.241379;ABP=36.7056;AC=2;AF=0.333333;AN=6;AO=14;CIGAR=1X;DP=67;DPB=67;DPRA=3.22222;EPP=33.4109;EPPR=118.098;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=3.46945e-18;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=505;QR=1992;RO=53;RPL=14;RPP=33.4109;RPPR=118.098;RPR=0;RUN=1;SAF=14;SAP=33.4109;SAR=0;SRF=53;SRP=118.098;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:42:32,10:32:1213:10:363:-20.3677,0,-96.8249 0/0:9:9,0:9:341:0:0:0,-2.70927,-31.0448 0/1:16:12,4:12:438:4:142:-8.31199,0,-34.9471 dDocent_Contig_13733 20 . A G 474.507 . AB=0.425;ABP=4.96463;AC=2;AF=0.333333;AN=6;AO=18;CIGAR=1X;DP=59;DPB=59;DPRA=0;EPP=42.0968;EPPR=92.0407;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=0.97561;PAO=0;PQA=0;PQR=0;PRO=0;QA=733;QR=1616;RO=41;RPL=0;RPP=42.0968;RPPR=92.0407;RPR=18;RUN=1;SAF=18;SAP=42.0968;SAR=0;SRF=41;SRP=92.0407;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:19:18,1:18:725:1:41:0,-1.625,-61.4818 0/1:29:16,13:16:624:13:529:-39.2264,0,-47.764 0/1:11:7,4:7:267:4:163:-11.7471,0,-21.0756 dDocent_Contig_13734 23 . C A 4685.67 . AB=0.892857;ABP=228.223;AC=3;AF=0.5;AN=6;AO=150;CIGAR=1X;DP=168;DPB=168;DPRA=0;EPP=328.731;EPPR=42.0968;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=6.93889e-18;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=5807;QR=718;RO=18;RPL=0;RPP=328.731;RPPR=42.0968;RPR=150;RUN=1;SAF=150;SAP=328.731;SAR=0;SRF=18;SRP=42.0968;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:105:9,96:9:355:96:3721:-303.355,0,-0.704195 0/1:6:1,5:1:41:5:193:-15.9344,0,-2.28839 0/1:57:8,49:8:322:49:1893:-153.43,0,-12.19 dDocent_Contig_13735 48 . C T 277.469 . AB=0.153846;ABP=84.19;AC=3;AF=0.5;AN=6;AO=12;CIGAR=1M3I8M1X3M;DP=90;DPB=94.2308;DPRA=0;EPP=29.068;EPPR=137.642;GTI=0;LEN=1;MEANALT=2.5;MQM=60;MQMR=60;NS=3;NUMALT=2;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=377;QR=2402;RO=62;RPL=0;RPP=29.068;RPPR=137.642;RPR=12;RUN=1;SAF=12;SAP=29.068;SAR=0;SRF=62;SRP=137.642;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|1:69:51,6,11:51:1968:6,11:228,353:-13.0661,-9.70113,-169.547,0,-142.916,-158.302 0|1:9:7,1,1:7:274:1,1:38,24:-1.07917,0,-22.36,-1.39738,-20.821,-23.6351 0|1:12:4,8,0:4:160:8,0:239,0:-18.186,0,-11.1717,-19.3901,-13.5799,-32.6041 dDocent_Contig_13736 8 . G A 9110.52 . AB=0.825826;ABP=310.075;AC=4;AF=0.666667;AN=6;AO=296;CIGAR=1X;DP=354;DPB=354;DPRA=0;EPP=645.766;EPPR=128.956;GTI=0;LEN=1;MEANALT=1;MQM=59.9595;MQMR=60;NS=3;NUMALT=1;ODDS=1.38778e-17;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=11272;QR=2216;RO=58;RPL=0;RPP=645.766;RPPR=128.956;RPR=296;RUN=1;SAF=296;SAP=645.766;SAR=0;SRF=58;SRP=128.956;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:257:46,211:46:1757:211:8032:-645.317,0,-81.0197 1/1:21:0,21:0:0:21:802:-72.505,-6.32163,0 0/1:76:12,64:12:459:64:2438:-196.752,0,-18.7812 dDocent_Contig_13737 41 . G T 260.672 . AB=0.197368;ABP=63.4687;AC=2;AF=0.333333;AN=6;AO=15;CIGAR=1X;DP=95;DPB=95;DPRA=2;EPP=35.5824;EPPR=176.728;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=3.46945e-18;PAIRED=1;PAIREDR=0.5;PAO=0;PQA=0;PQR=0;PRO=0;QA=575;QR=3177;RO=80;RPL=0;RPP=35.5824;RPPR=176.728;RPR=15;RUN=1;SAF=15;SAP=35.5824;SAR=0;SRF=80;SRP=176.728;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:67:55,12:55:2179:12:458:-21.3901,0,-176.122 0/1:9:6,3:6:237:3:117:-8.20002,0,-18.9934 0/0:19:19,0:19:761:0:0:0,-5.71957,-68.8122 dDocent_Contig_13738 94 . G C 78.0762 . AB=0.147541;ABP=68.8308;AC=2;AF=0.333333;AN=6;AO=9;CIGAR=1X;DP=62;DPB=62;DPRA=30.5;EPP=22.5536;EPPR=118.098;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=312;QR=1816;RO=53;RPL=9;RPP=22.5536;RPPR=118.098;RPR=0;RUN=1;SAF=9;SAP=22.5536;SAR=0;SRF=53;SRP=118.098;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:53:45,8:45:1556:8:277:-9.31228,0,-124.38 0/0:1:1,0:1:34:0:0:0,-0.30103,-3.39891 0/1:8:7,1:7:226:1:35:-1.09039,0,-18.2476 dDocent_Contig_13739 8 . G T 113.106 . AB=0.333333;ABP=6.62942;AC=1;AF=0.166667;AN=6;AO=7;CIGAR=1X;DP=74;DPB=74;DPRA=2.14286;EPP=18.2106;EPPR=148.499;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=270;QR=2569;RO=67;RPL=0;RPP=18.2106;RPPR=148.499;RPR=7;RUN=1;SAF=7;SAP=18.2106;SAR=0;SRF=67;SRP=148.499;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:45:43,2:43:1646:2:78:0,-6.14288,-141 0/1:15:10,5:10:384:5:192:-13.1346,0,-30.4007 0/0:14:14,0:14:539:0:0:0,-4.21442,-48.855 dDocent_Contig_13740 11 . A T 232.117 . AB=0.636364;ABP=4.78696;AC=3;AF=0.75;AN=4;AO=9;CIGAR=1X;DP=13;DPB=13;DPRA=0;EPP=22.5536;EPPR=11.6962;GTI=0;LEN=1;MEANALT=1;MQM=41.8889;MQMR=60;NS=2;NUMALT=1;ODDS=0;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=329;QR=146;RO=4;RPL=0;RPP=22.5536;RPPR=11.6962;RPR=9;RUN=1;SAF=9;SAP=22.5536;SAR=0;SRF=0;SRP=11.6962;SRR=4;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL ./.:.:.:.:.:.:.:. 0/1:11:4,7:4:146:7:259:-18.2627,0,-10.1865 1/1:2:0,2:0:0:2:70:-6.6474,-0.60206,0 dDocent_Contig_13741 16 . A C 468.863 . AB=0.358491;ABP=12.2288;AC=3;AF=0.5;AN=6;AO=19;CIGAR=1X;DP=53;DPB=53;DPRA=0;EPP=44.2683;EPPR=76.8404;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=0.631579;PAIREDR=0.705882;PAO=0;PQA=0;PQR=0;PRO=0;QA=740;QR=1364;RO=34;RPL=0;RPP=44.2683;RPPR=76.8404;RPR=19;RUN=1;SAF=19;SAP=44.2683;SAR=0;SRF=34;SRP=76.8404;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:35:22,13:22:879:13:497:-34.5226,0,-68.8803 0/1:9:4,5:4:164:5:202:-15.8528,0,-12.4406 0/1:9:8,1:8:321:1:41:-1.3853,0,-26.5488 dDocent_Contig_13742 9 . A T 326.527 . AB=0.218391;ABP=62.9379;AC=3;AF=0.5;AN=6;AO=19;CIGAR=1X;DP=87;DPB=87;DPRA=0;EPP=44.2683;EPPR=150.67;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=701;QR=2583;RO=68;RPL=0;RPP=44.2683;RPPR=150.67;RPR=19;RUN=1;SAF=19;SAP=44.2683;SAR=0;SRF=68;SRP=150.67;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:46:38,8:38:1446:8:289:-12.5097,0,-116.572 0/1:6:5,1:5:190:1:37:-1.89165,0,-15.6606 0/1:35:25,10:25:947:10:375:-23.5656,0,-75.0081 dDocent_Contig_13743 35 . T G 212.982 . AB=0.346154;ABP=8.35546;AC=1;AF=0.166667;AN=6;AO=9;CIGAR=1X;DP=64;DPB=64;DPRA=1.36842;EPP=22.5536;EPPR=122.441;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=0.854545;PAO=0;PQA=0;PQR=0;PRO=0;QA=340;QR=2137;RO=55;RPL=0;RPP=22.5536;RPPR=122.441;RPR=9;RUN=1;SAF=9;SAP=22.5536;SAR=0;SRF=55;SRP=122.441;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:26:26,0:26:1003:0:0:0,-7.82678,-90.569 0/0:12:12,0:12:454:0:0:0,-3.61236,-41.2003 0/1:26:17,9:17:680:9:340:-23.1221,0,-53.7048 dDocent_Contig_13744 44 . T C 40.9238 . AB=0.5;ABP=3.0103;AC=1;AF=0.166667;AN=6;AO=2;CIGAR=1X;DP=19;DPB=19;DPRA=0.533333;EPP=7.35324;EPPR=39.9253;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=4.33681e-19;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=75;QR=676;RO=17;RPL=0;RPP=7.35324;RPPR=39.9253;RPR=2;RUN=1;SAF=2;SAP=7.35324;SAR=0;SRF=17;SRP=39.9253;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:6:6,0:6:235:0:0:0,-1.80618,-21.5188 0/1:4:2,2:2:81:2:75:-5.91622,0,-6.48161 0/0:9:9,0:9:360:0:0:0,-2.70927,-32.7629 dDocent_Contig_13745 15 . T C 1233.18 . AB=0.398305;ABP=13.61;AC=3;AF=0.5;AN=6;AO=47;CIGAR=1X3M1X;DP=118;DPB=118;DPRA=0;EPP=105.07;EPPR=146.327;GTI=0;LEN=1;MEANALT=1.66667;MQM=58.2766;MQMR=60;NS=3;NUMALT=2;ODDS=0;PAIRED=0.957447;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=1829;QR=2599;RO=66;RPL=0;RPP=105.07;RPPR=146.327;RPR=47;RUN=1;SAF=47;SAP=105.07;SAR=0;SRF=66;SRP=146.327;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|1:61:31,2,28:31:1220:2,28:75,1110:-81.5269,-84.9754,-184.728,0,-94.5017,-91.9565 0|1:16:9,0,7:9:359:0,7:0,267:-18.1004,-20.8096,-50.3987,0,-29.9648,-27.8576 0|1:41:26,3,12:26:1020:3,12:115,452:-29.2132,-28.0485,-111.039,0,-74.9151,-80.2936 dDocent_Contig_13746 108 . C T 88.9976 . AB=0;ABP=0;AC=2;AF=1;AN=2;AO=3;CIGAR=2X1D1M;DP=3;DPB=2.25;DPRA=0;EPP=9.52472;EPPR=0;GTI=0;LEN=1;MEANALT=1;MQM=40;MQMR=0;NS=1;NUMALT=1;ODDS=6.68461;PAIRED=1;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=98;QR=0;RO=0;RPL=0;RPP=9.52472;RPPR=0;RPR=3;RUN=1;SAF=0;SAP=9.52472;SAR=3;SRF=0;SRP=0;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL .:.:.:.:.:.:.:. .:.:.:.:.:.:.:. 1|1:3:0,3:0:0:3:98:-8.89921,-0.90309,0 dDocent_Contig_13747 14 . A C 47.5167 . AB=0.4;ABP=3.44459;AC=1;AF=0.166667;AN=6;AO=2;CIGAR=1X;DP=27;DPB=27;DPRA=0.454545;EPP=7.35324;EPPR=57.2971;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=82;QR=995;RO=25;RPL=0;RPP=7.35324;RPPR=57.2971;RPR=2;RUN=1;SAF=2;SAP=7.35324;SAR=0;SRF=25;SRP=57.2971;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:5:3,2:3:123:2:82:-6.27453,0,-9.95964 0/0:15:15,0:15:600:0:0:0,-4.51545,-54.3371 0/0:7:7,0:7:272:0:0:0,-2.10721,-24.8442 dDocent_Contig_13748 27 . G A 2266.42 . AB=0.0426829;ABP=300.926;AC=0;AF=0;AN=6;AO=7;CIGAR=1X1M1I2M1X3M1X2M;DP=164;DPB=177.273;DPRA=0;EPP=18.2106;EPPR=68.1545;GTI=0;LEN=1;MEANALT=6.33333;MQM=60;MQMR=60;NS=3;NUMALT=5;ODDS=0;PAIRED=0;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=274;QR=1139;RO=30;RPL=0;RPP=18.2106;RPPR=68.1545;RPR=7;RUN=1;SAF=7;SAP=18.2106;SAR=0;SRF=30;SRP=68.1545;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|0:101:20,8,0,3,23,40:20:753:8,0,3,23,40:310,0,115,817,1560:-127.066,-107.618,-166.905,-133.087,-169.314,-194.782,-123.648,-159.875,-185.343,-184.44,-66.5406,-102.766,-128.234,-118.795,-121.31,-4.84737,-41.0766,-66.5468,-57.1076,0,-54.5056 0|0:15:3,2,0,2,1,6:3:112:2,0,2,1,6:79,0,79,39,236:-18.5111,-12.9127,-21.4761,-19.4142,-22.0782,-28.5801,-12.9127,-15.5759,-22.0782,-21.4761,-16.2093,-18.8729,-25.3749,-18.8729,-25.0739,0,-2.66003,-9.16367,-2.66003,-5.95805,-7.35749 0|0:48:7,3,3,2,2,28:7:274:3,3,2,2,28:119,118,80,73,1080:-86.5873,-78.8972,-100.526,-78.9866,-91.7216,-100.616,-82.1033,-94.8383,-94.9277,-104.033,-82.7332,-95.468,-95.5574,-98.6741,-104.663,0,-12.7388,-12.8286,-15.9457,-16.5776,-14.1097 dDocent_Contig_13749 28 . G A 246.583 . AB=0;ABP=0;AC=2;AF=0.333333;AN=6;AO=7;CIGAR=1X;DP=20;DPB=20;DPRA=1.07692;EPP=18.2106;EPPR=31.2394;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=268;QR=509;RO=13;RPL=0;RPP=18.2106;RPPR=31.2394;RPR=7;RUN=1;SAF=7;SAP=18.2106;SAR=0;SRF=13;SRP=31.2394;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:7:7,0:7:270:0:0:0,-2.10721,-24.6578 1/1:7:0,7:0:0:7:268:-24.4821,-2.10721,0 0/0:6:6,0:6:239:0:0:0,-1.80618,-21.8844 dDocent_Contig_13750 121 . G A 30.1771 . AB=0.333333;ABP=4.45795;AC=1;AF=0.166667;AN=6;AO=2;CIGAR=1X2M1X;DP=18;DPB=18;DPRA=1;EPP=7.35324;EPPR=37.7539;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=0;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=70;QR=550;RO=16;RPL=0;RPP=7.35324;RPPR=37.7539;RPR=2;RUN=1;SAF=0;SAP=7.35324;SAR=2;SRF=0;SRP=37.7539;SRR=16;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|0:7:7,0:7:241:0:0:0,-2.10721,-22.0256 0|0:5:5,0:5:166:0:0:0,-1.50515,-15.2671 0|1:6:4,2:4:143:2:70:-4.84115,0,-11.4153 dDocent_Contig_13751 35 . T C 525.036 . AB=0.527778;ABP=3.25157;AC=2;AF=0.333333;AN=6;AO=20;CIGAR=1X;DP=56;DPB=56;DPRA=0;EPP=46.4397;EPPR=81.1833;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=0.95;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=776;QR=1442;RO=36;RPL=0;RPP=46.4397;RPPR=81.1833;RPR=20;RUN=1;SAF=20;SAP=46.4397;SAR=0;SRF=36;SRP=81.1833;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:17:13,4:13:526:4:162:-9.84924,0,-42.5689 0/1:19:4,15:4:161:15:573:-46.1772,0,-9.15533 0/0:20:19,1:19:755:1:41:0,-1.92603,-64.1742 dDocent_Contig_13753 25 . C T 613.527 . AB=0.377049;ABP=11.0198;AC=2;AF=0.333333;AN=6;AO=23;CIGAR=1X;DP=69;DPB=69;DPRA=3.8125;EPP=52.9542;EPPR=102.898;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=917;QR=1789;RO=46;RPL=0;RPP=52.9542;RPPR=102.898;RPR=23;RUN=1;SAF=23;SAP=52.9542;SAR=0;SRF=46;SRP=102.898;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:41:21,20:21:793:20:794:-59.4313,0,-59.3356 0/0:8:8,0:8:316:0:0:0,-2.40824,-28.8048 0/1:20:17,3:17:680:3:123:-5.44419,0,-55.5101 dDocent_Contig_13755 29 . G T 174.403 . AB=0.242424;ABP=22.0271;AC=1;AF=0.166667;AN=6;AO=9;CIGAR=1X3M3I2X;DP=76;DPB=80.5;DPRA=4.92857;EPP=22.5536;EPPR=148.499;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=357;QR=2470;RO=67;RPL=0;RPP=22.5536;RPPR=148.499;RPR=9;RUN=1;SAF=9;SAP=22.5536;SAR=0;SRF=67;SRP=148.499;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|1:33:25,8:25:923:8:317:-18.9631,0,-73.4504 0|0:7:7,0:7:231:0:0:0,-2.10721,-21.109 0|0:36:35,1:35:1316:1:40:0,-6.8414,-114.732 dDocent_Contig_13756 9 . A G 680.653 . AB=0.172932;ABP=126.588;AC=3;AF=0.5;AN=6;AO=23;CIGAR=1X4M;DP=133;DPB=133;DPRA=0;EPP=52.9542;EPPR=185.414;GTI=0;LEN=1;MEANALT=1.66667;MQM=37.8261;MQMR=60;NS=3;NUMALT=2;ODDS=1.38778e-17;PAIRED=0.0869565;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=817;QR=3307;RO=84;RPL=0;RPP=52.9542;RPPR=185.414;RPR=23;RUN=1;SAF=23;SAP=52.9542;SAR=0;SRF=84;SRP=185.414;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|1:113:70,25,17:70:2749:25,17:978,589:-59.3778,0,-218.623,-36.9336,-182.617,-257.91 0|1:5:3,0,2:3:120:0,2:0,75:-5.09273,-5.99582,-15.9125,0,-10.2848,-9.68275 0|1:15:11,0,4:11:438:0,4:0,153:-9.11745,-12.4288,-48.5176,0,-36.4651,-35.261 dDocent_Contig_13757 8 . G A 279.915 . AB=0.25;ABP=33.4109;AC=3;AF=0.5;AN=6;AO=14;CIGAR=1X;DP=56;DPB=56;DPRA=0;EPP=33.4109;EPPR=94.2121;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=546;QR=1590;RO=42;RPL=0;RPP=33.4109;RPPR=94.2121;RPR=14;RUN=1;SAF=14;SAP=33.4109;SAR=0;SRF=42;SRP=94.2121;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:26:16,10:16:600:10:390:-27.632,0,-46.5063 0/1:6:5,1:5:184:1:39:-2.09038,0,-15.1104 0/1:24:21,3:21:806:3:117:-3.68566,0,-65.64 dDocent_Contig_13758 8 . G A 77.3022 . AB=0.166667;ABP=14.5915;AC=1;AF=0.166667;AN=6;AO=2;CIGAR=1X3M2X1M1X;DP=27;DPB=27;DPRA=6;EPP=7.35324;EPPR=50.7827;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=2;ODDS=1.73472e-18;PAIRED=0;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=78;QR=853;RO=22;RPL=0;RPP=7.35324;RPPR=50.7827;RPR=2;RUN=1;SAF=2;SAP=7.35324;SAR=0;SRF=22;SRP=50.7827;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|1:12:10,2,0:10:382:2,0:78,0:-3.79094,0,-31.1207,-6.80124,-31.7228,-38.1357 0|0:2:2,0,0:2:78:0,0:0,0:0,-0.60206,-7.4033,-0.60206,-7.4033,-7.4033 0|0:13:10,0,3:10:393:0,3:0,122:-7.4591,-10.4694,-42.7844,0,-32.718,-31.8149 dDocent_Contig_13759 121 . T A 140.757 . AB=0.388889;ABP=4.9405;AC=2;AF=0.333333;AN=6;AO=8;CIGAR=1X;DP=35;DPB=35;DPRA=0;EPP=20.3821;EPPR=53.2759;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=58.2222;NS=3;NUMALT=1;ODDS=1.73472e-18;PAIRED=0.125;PAIREDR=0.962963;PAO=0;PQA=0;PQR=0;PRO=0;QA=271;QR=924;RO=27;RPL=0;RPP=20.3821;RPPR=61.6401;RPR=8;RUN=1;SAF=0;SAP=20.3821;SAR=8;SRF=1;SRP=53.2759;SRR=26;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:17:16,1:16:565:1:34:0,-1.7186,-45.3363 0/1:9:3,6:3:103:6:203:-15.8926,0,-6.90053 0/1:9:8,1:8:256:1:34:-0.689641,0,-20.6406 dDocent_Contig_13760 43 . G A 593.427 . AB=0.290698;ABP=35.7339;AC=3;AF=0.5;AN=6;AO=25;CIGAR=1X;DP=86;DPB=86;DPRA=0;EPP=57.2971;EPPR=133.299;GTI=0;LEN=1;MEANALT=1.33333;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=994;QR=2382;RO=60;RPL=0;RPP=57.2971;RPPR=133.299;RPR=25;RUN=1;SAF=25;SAP=57.2971;SAR=0;SRF=60;SRP=133.299;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:53:39,14:39:1537:14:552:-34.0604,0,-122.614 0/1:4:1,3:1:40:3:122:-10.1684,0,-2.79156 0/1:29:20,8:20:805:8:320:-20.6141,0,-64.2338 dDocent_Contig_13762 15 . T G 2460.47 . AB=0.518987;ABP=3.50507;AC=3;AF=0.5;AN=6;AO=82;CIGAR=1X2M;DP=158;DPB=158;DPRA=0;EPP=181.071;EPPR=161.528;GTI=0;LEN=1;MEANALT=1.33333;MQM=60;MQMR=60;NS=3;NUMALT=2;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=3273;QR=2909;RO=73;RPL=0;RPP=181.071;RPPR=161.528;RPR=82;RUN=1;SAF=82;SAP=181.071;SAR=0;SRF=73;SRP=161.528;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|1:103:44,0,59:44:1768:0,59:0,2341:-179.839,-193.084,-338.777,0,-146.092,-128.331 0|1:11:6,3,2:6:235:3,2:121,82:-8.16411,0,-18.4067,-3.19949,-12.5371,-21.9131 0|1:44:23,0,21:23:906:0,21:0,850:-63.5671,-70.4908,-145.014,0,-74.9223,-68.6006 dDocent_Contig_13763 20 . A C 59.3659 . AB=0.25;ABP=9.52472;AC=1;AF=0.166667;AN=6;AO=3;CIGAR=1X;DP=25;DPB=25;DPRA=1.84615;EPP=9.52472;EPPR=50.7827;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=8.67362e-19;PAIRED=0;PAIREDR=0.772727;PAO=0;PQA=0;PQR=0;PRO=0;QA=122;QR=876;RO=22;RPL=0;RPP=9.52472;RPPR=50.7827;RPR=3;RUN=1;SAF=3;SAP=9.52472;SAR=0;SRF=22;SRP=50.7827;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:11:11,0:11:437:0:0:0,-3.31133,-39.6839 0/0:2:2,0:2:79:0:0:0,-0.60206,-7.49763 0/1:12:9,3:9:360:3:122:-7.76013,0,-29.1512 dDocent_Contig_13765 18 . C T 103.254 . AB=0.238095;ABP=15.5221;AC=1;AF=0.166667;AN=6;AO=5;CIGAR=1X;DP=83;DPB=83;DPRA=0.677419;EPP=13.8677;EPPR=172.385;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=0.948718;PAO=0;PQA=0;PQR=0;PRO=0;QA=201;QR=3082;RO=78;RPL=0;RPP=13.8677;RPPR=172.385;RPR=5;RUN=1;SAF=5;SAP=13.8677;SAR=0;SRF=78;SRP=172.385;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:36:36,0:36:1416:0:0:0,-10.8371,-127.686 0/1:21:16,5:16:630:5:201:-12.1493,0,-50.7095 0/0:26:26,0:26:1036:0:0:0,-7.82678,-93.5353 dDocent_Contig_13766 34 . C T 126.769 . AB=0.210526;ABP=30.668;AC=2;AF=0.333333;AN=6;AO=9;CIGAR=1X;DP=53;DPB=53;DPRA=0;EPP=22.5536;EPPR=98.5551;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=337;QR=1766;RO=44;RPL=0;RPP=22.5536;RPPR=98.5551;RPR=9;RUN=1;SAF=9;SAP=22.5536;SAR=0;SRF=44;SRP=98.5551;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:15:14,1:14:562:1:38:0,-0.718181,-47.1216 0/1:14:10,4:10:405:4:147:-9.37503,0,-32.596 0/1:24:20,4:20:799:4:152:-6.82448,0,-65.0003 dDocent_Contig_13767 7 . A G 261.799 . AB=0.32;ABP=17.0814;AC=3;AF=0.5;AN=6;AO=16;CIGAR=1X;DP=50;DPB=50;DPRA=0;EPP=37.7539;EPPR=76.8404;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=509;QR=1276;RO=34;RPL=0;RPP=37.7539;RPPR=76.8404;RPR=16;RUN=1;SAF=16;SAP=37.7539;SAR=0;SRF=34;SRP=76.8404;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:17:14,3:14:518:3:81:-2.43864,0,-41.832 0/1:16:7,9:7:258:9:303:-22.7752,0,-18.7573 0/1:17:13,4:13:500:4:125:-6.43915,0,-40.2302 dDocent_Contig_13769 34 . C T 96.8864 . AB=0.208333;ABP=20.744;AC=1;AF=0.166667;AN=6;AO=5;CIGAR=2X;DP=41;DPB=41;DPRA=2.66667;EPP=13.8677;EPPR=70.3259;GTI=0;LEN=1;MEANALT=2;MQM=60;MQMR=60;NS=3;NUMALT=2;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=198;QR=1216;RO=31;RPL=0;RPP=13.8677;RPPR=70.3259;RPR=5;RUN=1;SAF=5;SAP=13.8677;SAR=0;SRF=31;SRP=70.3259;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|0:9:9,0,0:9:337:0,0:0,0:0,-2.70927,-30.6724,-2.70927,-30.6724,-30.6724 0|1:24:16,5,3:16:639:5,3:198,121:-11.4752,0,-51.1215,-6.31496,-42.652,-58.0444 0|0:8:6,0,1:6:240:0,1:0,39:-1.42957,-3.23575,-23.0353,0,-19.8294,-19.5284 dDocent_Contig_13770 1 . N T 537.024 . AB=0;ABP=0;AC=2;AF=1;AN=2;AO=15;CIGAR=1X;DP=15;DPB=15;DPRA=0;EPP=35.5824;EPPR=0;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=0;NS=1;NUMALT=1;ODDS=15.0024;PAIRED=0.4;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=593;QR=0;RO=0;RPL=0;RPP=35.5824;RPPR=0;RPR=15;RUN=1;SAF=15;SAP=35.5824;SAR=0;SRF=0;SRP=0;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 1/1:15:0,15:0:0:15:593:-53.7024,-4.51545,0 ./.:.:.:.:.:.:.:. ./.:.:.:.:.:.:.:. dDocent_Contig_13771 14 . A C 224.614 . AB=0.333333;ABP=9.52472;AC=2;AF=0.5;AN=4;AO=9;CIGAR=1X;DP=27;DPB=27;DPRA=0;EPP=22.5536;EPPR=42.0968;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=2;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=365;QR=725;RO=18;RPL=0;RPP=22.5536;RPPR=42.0968;RPR=9;RUN=1;SAF=9;SAP=22.5536;SAR=0;SRF=18;SRP=42.0968;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:18:10,8:10:400:8:324:-24.1107,0,-30.9382 0/1:9:8,1:8:325:1:41:-1.3853,0,-26.9104 ./.:.:.:.:.:.:.:. dDocent_Contig_13773 29 . T C 508.932 . AB=0.545455;ABP=3.60252;AC=2;AF=0.333333;AN=6;AO=18;CIGAR=1X;DP=40;DPB=40;DPRA=2.35714;EPP=42.0968;EPPR=50.7827;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=1.73472e-18;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=706;QR=873;RO=22;RPL=0;RPP=42.0968;RPPR=50.7827;RPR=18;RUN=1;SAF=18;SAP=42.0968;SAR=0;SRF=22;SRP=50.7827;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:7:7,0:7:283:0:0:0,-2.10721,-25.843 0/1:8:7,1:7:270:1:41:-1.68633,0,-22.2522 0/1:25:8,17:8:320:17:665:-52.6519,0,-21.6415 dDocent_Contig_13774 43 . C T 74.5125 . AB=0.152174;ABP=51.3492;AC=3;AF=0.5;AN=6;AO=7;CIGAR=1X;DP=46;DPB=46;DPRA=0;EPP=18.2106;EPPR=87.6977;GTI=0;LEN=1;MEANALT=1;MQM=57.7143;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=0.857143;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=277;QR=1558;RO=39;RPL=0;RPP=18.2106;RPPR=87.6977;RPR=7;RUN=1;SAF=7;SAP=18.2106;SAR=0;SRF=39;SRP=87.6977;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:33:29,4:29:1150:4:160:-4.84944,0,-93.8426 0/1:4:2,2:2:81:2:77:-6.10471,0,-6.48161 0/1:9:8,1:8:327:1:40:-1.1452,0,-27.0908 dDocent_Contig_13775 23 . T A 1274.12 . AB=0.295082;ABP=69.7564;AC=3;AF=0.5;AN=6;AO=54;CIGAR=2X1M1X1M;DP=183;DPB=183;DPRA=0;EPP=120.27;EPPR=244.044;GTI=0;LEN=1;MEANALT=3.33333;MQM=53.1852;MQMR=60;NS=3;NUMALT=2;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=2066;QR=4389;RO=111;RPL=0;RPP=120.27;RPPR=244.044;RPR=54;RUN=1;SAF=54;SAP=120.27;SAR=0;SRF=111;SRP=244.044;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|1:99:64,0,26:64:2536:0,26:0,1001:-61.7484,-81.0144,-289.752,0,-208.73,-200.903 0|1:27:19,3,4:19:755:3,4:121,149:-6.26024,-3.96525,-65.2392,0,-54.1759,-60.9939 0|1:57:28,3,24:28:1098:3,24:117,916:-64.9263,-65.4539,-154.85,0,-82.4178,-83.0933 dDocent_Contig_13776 125 . C T 213.923 . AB=0.261905;ABP=23.691;AC=2;AF=0.333333;AN=6;AO=14;CIGAR=1X;DP=76;DPB=76;DPRA=0;EPP=33.4109;EPPR=137.642;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=3.46945e-18;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=499;QR=2203;RO=62;RPL=0;RPP=33.4109;RPPR=137.642;RPR=14;RUN=1;SAF=0;SAP=33.4109;SAR=14;SRF=0;SRP=137.642;SRR=62;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:34:31,3:31:1090:3:104:0,-0.532203,-88.6977 0/1:22:20,2:20:713:2:74:-0.403216,0,-57.8728 0/1:20:11,9:11:400:9:321:-23.2121,0,-30.3239 dDocent_Contig_13777 8 . C T 37.4541 . AB=0.666667;ABP=3.73412;AC=1;AF=0.166667;AN=6;AO=2;CIGAR=1X;DP=48;DPB=48;DPRA=0.133333;EPP=7.35324;EPPR=102.898;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=68;QR=1772;RO=46;RPL=0;RPP=7.35324;RPPR=102.898;RPR=2;RUN=1;SAF=2;SAP=7.35324;SAR=0;SRF=46;SRP=102.898;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:20:20,0:20:767:0:0:0,-6.0206,-69.3581 0/1:3:1,2:1:39:2:68:-5.55479,0,-2.99347 0/0:25:25,0:25:966:0:0:0,-7.52575,-87.2524 dDocent_Contig_13778 7 . A G 2679.63 . AB=0.398374;ABP=25.0781;AC=2;AF=0.333333;AN=6;AO=98;CIGAR=2X3M;DP=246;DPB=246;DPRA=0;EPP=215.815;EPPR=72.4974;GTI=0;LEN=1;MEANALT=4;MQM=21.4898;MQMR=60;NS=3;NUMALT=4;ODDS=0;PAIRED=0;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=2054;QR=1214;RO=32;RPL=0;RPP=215.815;RPPR=72.4974;RPR=98;RUN=1;SAF=98;SAP=215.815;SAR=0;SRF=32;SRP=72.4974;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|0:100:23,7,5,18,46:23:867:7,5,18,46:277,35,337,1338:-95.0279,-79.1387,-148.114,-101.47,-149.739,-171.04,-81.2793,-129.549,-151.877,-146.937,0,-48.3077,-70.6516,-50.4816,-57.2766 1|0:84:1,0,6,60,14:1:39:0,6,60,14:0,42,1308,325:-102.935,-103.236,-106.445,-102.652,-105.861,-104.055,-19.2599,-22.475,-21.9245,-4.41317,-80.8034,-84.0123,-83.4303,0,-79.7979 1|0:62:8,0,0,20,34:8:308:0,0,20,34:0,0,409,1026:-75.4493,-77.8575,-103.165,-77.8575,-103.165,-103.165,-52.1405,-77.4485,-77.4485,-71.4279,-0.260407,-25.6092,-25.6092,0,-15.3742 dDocent_Contig_13780 13 . G A 41.0947 . AB=0.333333;ABP=4.45795;AC=1;AF=0.166667;AN=6;AO=4;CIGAR=1X;DP=49;DPB=49;DPRA=1.95;EPP=11.6962;EPPR=100.727;GTI=0;LEN=1;MEANALT=1;MQM=53;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=0;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=164;QR=1783;RO=45;RPL=0;RPP=11.6962;RPPR=100.727;RPR=4;RUN=1;SAF=4;SAP=11.6962;SAR=0;SRF=45;SRP=100.727;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:33:31,2:31:1214:2:82:0,-2.19447,-101.792 0/1:6:4,2:4:160:2:82:-5.93334,0,-12.9778 0/0:10:10,0:10:409:0:0:0,-3.0103,-37.1706 dDocent_Contig_13781 52 . T C 734.232 . AB=0.444444;ABP=4.69922;AC=3;AF=0.5;AN=6;AO=28;CIGAR=1X;DP=63;DPB=63;DPRA=0;EPP=63.8115;EPPR=79.0118;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=1076;QR=1375;RO=35;RPL=28;RPP=63.8115;RPPR=79.0118;RPR=0;RUN=1;SAF=28;SAP=63.8115;SAR=0;SRF=35;SRP=79.0118;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:27:11,16:11:419:16:623:-48.2683,0,-29.9243 0/1:15:13,2:13:527:2:81:-3.17028,0,-43.2617 0/1:21:11,10:11:429:10:372:-27.4979,0,-32.6347 dDocent_Contig_13782 148 . T C 343.897 . AB=0.326087;ABP=15.095;AC=3;AF=0.5;AN=6;AO=15;CIGAR=2X;DP=46;DPB=46;DPRA=0;EPP=35.5824;EPPR=68.1545;GTI=0;LEN=1;MEANALT=1.33333;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=582;QR=1132;RO=30;RPL=0;RPP=35.5824;RPPR=68.1545;RPR=15;RUN=1;SAF=0;SAP=35.5824;SAR=15;SRF=0;SRP=68.1545;SRR=30;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|1:25:22,3:22:833:3:116:-3.29195,0,-67.7672 0|1:6:1,4:1:38:4:156:-12.7542,0,-2.05226 0|1:15:7,8:7:261:8:310:-23.7483,0,-19.33 dDocent_Contig_13783 64 . G C 1099.39 . AB=0.321918;ABP=43.2272;AC=3;AF=0.5;AN=6;AO=47;CIGAR=1X;DP=146;DPB=146;DPRA=0;EPP=105.07;EPPR=217.986;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=0.893617;PAIREDR=0.969697;PAO=0;PQA=0;PQR=0;PRO=0;QA=1761;QR=3771;RO=99;RPL=47;RPP=105.07;RPPR=217.986;RPR=0;RUN=1;SAF=47;SAP=105.07;SAR=0;SRF=99;SRP=217.986;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:65:53,12:53:2016:12:462:-22.3615,0,-162.079 0/1:19:15,4:15:554:4:124:-5.74163,0,-44.4622 0/1:62:31,31:31:1201:31:1175:-87.3592,0,-89.7063 dDocent_Contig_13786 65 . G A 94.6847 . AB=0.277778;ABP=10.7311;AC=2;AF=0.333333;AN=6;AO=5;CIGAR=1X;DP=26;DPB=26;DPRA=1.125;EPP=13.8677;EPPR=48.6112;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=196;QR=822;RO=21;RPL=5;RPP=13.8677;RPPR=48.6112;RPR=0;RUN=1;SAF=5;SAP=13.8677;SAR=0;SRF=21;SRP=48.6112;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:12:10,2:10:391:2:82:-4.16732,0,-31.9298 0/0:8:8,0:8:311:0:0:0,-2.40824,-28.3529 0/1:6:3,3:3:120:3:114:-8.82304,0,-9.38113 dDocent_Contig_13787 20 . T C 1063.09 . AB=0.162162;ABP=76.3709;AC=1;AF=0.166667;AN=6;AO=12;CIGAR=9M1X6M;DP=82;DPB=85.375;DPRA=0;EPP=29.068;EPPR=52.9542;GTI=0;LEN=1;MEANALT=4;MQM=60;MQMR=60;NS=3;NUMALT=4;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=486;QR=906;RO=23;RPL=0;RPP=29.068;RPPR=52.9542;RPR=12;RUN=1;SAF=12;SAP=29.068;SAR=0;SRF=23;SRP=52.9542;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|0:44:15,6,16,6,1:15:589:6,16,6,1:231,611,223,41:-45.5997,-31.1483,-77.7884,0,-29.4824,-43.6313,-31.8668,-61.3462,-30.2011,-78.5055,-46.7301,-76.2098,-45.0629,-76.927,-94.8748 0|0:8:2,0,5,0,0:2:80:0,5,0,0:0,187,0,0:-14.6892,-15.2913,-21.8868,0,-6.59016,-5.08501,-15.2913,-21.8868,-6.59016,-21.8868,-15.2913,-21.8868,-6.59016,-21.8868,-21.8868 0|1:30:6,1,11,1,11:6:237:1,11,1,11:39,439,39,445:-51.5428,-50.1436,-69.3441,-17.1957,-33.491,-33.385,-50.1436,-66.4397,-33.491,-69.3441,-16.6558,-32.9523,0,-32.9523,-32.8465 dDocent_Contig_13788 8 . C G 1539.68 . AB=0.569892;ABP=6.95631;AC=3;AF=0.5;AN=6;AO=53;CIGAR=1X2M;DP=93;DPB=93;DPRA=0;EPP=118.098;EPPR=74.6689;GTI=0;LEN=1;MEANALT=2.66667;MQM=60;MQMR=60;NS=3;NUMALT=2;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=2048;QR=1274;RO=33;RPL=0;RPP=118.098;RPPR=74.6689;RPR=53;RUN=1;SAF=53;SAP=118.098;SAR=0;SRF=33;SRP=74.6689;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|1:37:17,3,15:17:658:3,15:116,576:-42.1613,-37.7502,-90.9009,0,-44.5237,-49.5364 0|1:20:2,0,18:2:76:0,18:0,696:-56.9536,-57.5557,-63.7879,0,-6.61261,-1.19407 0|1:36:14,1,20:14:540:1,20:38,776:-59.5483,-60.6465,-104.69,0,-41.2303,-38.3259 dDocent_Contig_13789 74 . C G 201.097 . AB=0.173469;ABP=93.769;AC=3;AF=0.5;AN=6;AO=17;CIGAR=1X;DP=98;DPB=98;DPRA=0;EPP=39.9253;EPPR=178.9;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=589;QR=2914;RO=81;RPL=17;RPP=39.9253;RPPR=178.9;RPR=0;RUN=1;SAF=17;SAP=39.9253;SAR=0;SRF=81;SRP=178.9;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:69:62,7:62:2237:7:237:-0.886306,0,-180.814 0/1:8:6,2:6:211:2:65:-3.76529,0,-16.9239 0/1:21:13,8:13:466:8:287:-19.8539,0,-35.9555 dDocent_Contig_13790 14 . G T 161.973 . AB=0.181818;ABP=12.6832;AC=1;AF=0.166667;AN=6;AO=2;CIGAR=6M1X3M1X1M;DP=35;DPB=34;DPRA=0;EPP=7.35324;EPPR=50.7827;GTI=0;LEN=1;MEANALT=3;MQM=54;MQMR=60;NS=3;NUMALT=3;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=82;QR=866;RO=22;RPL=0;RPP=7.35324;RPPR=50.7827;RPR=2;RUN=1;SAF=2;SAP=7.35324;SAR=0;SRF=22;SRP=50.7827;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|0:12:9,0,3,0:9:358:0,3,0:0,57,0:-0.872435,-3.5817,-33.2369,0,-29.8747,-28.9716,-3.5817,-33.2369,-29.8747,-33.2369 0|0:12:6,0,0,5:6:234:0,0,5:0,0,203:-15.049,-16.8551,-36.0934,-16.8551,-36.0934,-36.0934,0,-19.3375,-19.3375,-17.8324 0|1:11:7,2,1,1:7:274:2,1,1:82,18,40:-4.66017,0,-22.018,-5.7796,-21.5958,-27.9994,-3.45256,-19.3207,-25.0049,-25.7306 dDocent_Contig_13792 55 . G A 273.316 . AB=0.342857;ABP=10.5174;AC=2;AF=0.333333;AN=6;AO=12;CIGAR=3X;DP=74;DPB=74;DPRA=0.448718;EPP=29.068;EPPR=131.127;GTI=0;LEN=1;MEANALT=2;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=3.46945e-18;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=454;QR=2257;RO=59;RPL=12;RPP=29.068;RPPR=131.127;RPR=0;RUN=1;SAF=12;SAP=29.068;SAR=0;SRF=59;SRP=131.127;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|0:39:38,0:38:1479:0:0:0,-11.4391,-133.012 0|1:12:4,7:4:157:7:270:-20.9469,0,-10.7912 0|1:23:17,5:17:621:5:184:-9.90759,0,-49.2061 dDocent_Contig_13793 1 . N G 50332 . AB=0;ABP=0;AC=6;AF=1;AN=6;AO=1642;CIGAR=1X;DP=1642;DPB=1642;DPRA=0;EPP=3551.22;EPPR=0;GTI=0;LEN=1;MEANALT=1;MQM=58.1778;MQMR=0;NS=3;NUMALT=1;ODDS=1.69407e-21;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=56065;QR=0;RO=0;RPL=0;RPP=3568.57;RPPR=0;RPR=1642;RUN=1;SAF=2;SAP=3551.22;SAR=1640;SRF=0;SRP=0;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 1/1:851:0,851:0:0:851:29008:-2601.85,-256.177,0 1/1:213:0,213:0:0:213:7308:-657,-64.1194,0 1/1:578:0,578:0:0:578:19749:-1773.88,-173.995,0 dDocent_Contig_13794 19 . G A 68.6098 . AB=0.357143;ABP=5.49198;AC=2;AF=0.333333;AN=6;AO=5;CIGAR=1X;DP=20;DPB=20;DPRA=1.16667;EPP=13.8677;EPPR=35.5824;GTI=0;LEN=1;MEANALT=1;MQM=48;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=0;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=156;QR=608;RO=15;RPL=0;RPP=13.8677;RPPR=35.5824;RPR=5;RUN=1;SAF=0;SAP=13.8677;SAR=5;SRF=15;SRP=35.5824;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:10:7,3:7:285:3:81:-4.53666,0,-23.0141 0/1:4:2,2:2:79:2:75:-5.84673,0,-6.29312 0/0:6:6,0:6:244:0:0:0,-1.80618,-22.3388 dDocent_Contig_13795 107 . N C 387.57 . AB=0.692308;ABP=15.538;AC=6;AF=1;AN=6;AO=35;CIGAR=1X3M;DP=47;DPB=47;DPRA=0;EPP=79.0118;EPPR=0;GTI=0;LEN=1;MEANALT=2.33333;MQM=15.4571;MQMR=0;NS=3;NUMALT=3;ODDS=0;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=513;QR=0;RO=0;RPL=0;RPP=79.0118;RPPR=0;RPR=35;RUN=1;SAF=0;SAP=79.0118;SAR=35;SRF=0;SRP=0;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 1|1:21:0,4,3,14:0:0:4,3,14:126,102,248:-21.0071,-14.8404,-13.6363,-16.2907,-10.1205,-15.3877,-6.1566,0,-1.44514,-1.94218 1|1:8:0,0,0,8:0:0:0,0,8:0,0,146:-11.4284,-11.4284,-11.4284,-11.4284,-11.4284,-11.4284,-2.40824,-2.40824,-2.40824,0 1|1:18:0,2,3,13:0:0:2,3,13:68,97,119:-8.42985,-5.27799,-4.67593,-3.72826,-0.570323,-2.82517,-4.68072,-1.54125,0,-0.767329 dDocent_Contig_13796 12 . C A 195.927 . AB=0.196429;ABP=47.8357;AC=3;AF=0.5;AN=6;AO=11;CIGAR=1X;DP=56;DPB=56;DPRA=0;EPP=26.8965;EPPR=100.727;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=432;QR=1811;RO=45;RPL=0;RPP=26.8965;RPPR=100.727;RPR=11;RUN=1;SAF=11;SAP=26.8965;SAR=0;SRF=45;SRP=100.727;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:37:34,3:34:1365:3:120:-0.0495804,0,-111.965 0/1:12:6,6:6:245:6:234:-17.8178,0,-18.8171 0/1:7:5,2:5:201:2:78:-5.29609,0,-16.3628 dDocent_Contig_13797 25 . A G 147.047 . AB=0.3;ABP=9.95901;AC=1;AF=0.166667;AN=6;AO=6;CIGAR=1X;DP=51;DPB=51;DPRA=1.29032;EPP=16.0391;EPPR=100.727;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=243;QR=1799;RO=45;RPL=0;RPP=16.0391;RPPR=100.727;RPR=6;RUN=1;SAF=6;SAP=16.0391;SAR=0;SRF=45;SRP=100.727;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:20:14,6:14:558:6:243:-16.2276,0,-44.541 0/0:8:8,0:8:317:0:0:0,-2.40824,-28.8929 0/0:23:23,0:23:924:0:0:0,-6.92369,-83.465 dDocent_Contig_13799 68 . C T 173.81 . AB=0.75;ABP=7.35324;AC=1;AF=0.166667;AN=6;AO=6;CIGAR=1X;DP=56;DPB=56;DPRA=0.333333;EPP=3.0103;EPPR=94.907;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=0;PAIREDR=0.92;PAO=0;PQA=0;PQR=0;PRO=0;QA=236;QR=1872;RO=50;RPL=6;RPP=16.0391;RPPR=111.584;RPR=0;RUN=1;SAF=3;SAP=3.0103;SAR=3;SRF=48;SRP=94.907;SRR=2;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:33:33,0:33:1252:0:0:0,-9.93399,-112.968 0/1:8:2,6:2:71:6:236:-19.2042,0,-4.33366 0/0:15:15,0:15:549:0:0:0,-4.51545,-49.7487 dDocent_Contig_13801 98 . N A 190.597 . AB=0;ABP=0;AC=2;AF=1;AN=2;AO=6;CIGAR=1X;DP=6;DPB=6;DPRA=0;EPP=16.0391;EPPR=0;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=0;NS=1;NUMALT=1;ODDS=8.76405;PAIRED=1;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=208;QR=0;RO=0;RPL=6;RPP=16.0391;RPPR=0;RPR=0;RUN=1;SAF=6;SAP=16.0391;SAR=0;SRF=0;SRP=0;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL ./.:.:.:.:.:.:.:. ./.:.:.:.:.:.:.:. 1/1:6:0,6:0:0:6:208:-19.0596,-1.80618,0 dDocent_Contig_13802 127 . G A 102.515 . AB=0;ABP=0;AC=2;AF=0.333333;AN=6;AO=3;CIGAR=1X;DP=15;DPB=15;DPRA=0.5;EPP=9.52472;EPPR=29.068;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=108;QR=414;RO=12;RPL=0;RPP=9.52472;RPPR=29.068;RPR=3;RUN=1;SAF=0;SAP=9.52472;SAR=3;SRF=0;SRP=29.068;SRR=12;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:7:7,0:7:245:0:0:0,-2.10721,-22.3912 1/1:3:0,3:0:0:3:108:-10.0752,-0.90309,0 0/0:5:5,0:5:169:0:0:0,-1.50515,-15.543 dDocent_Contig_13803 32 . T G 193.067 . AB=0.1;ABP=30.8051;AC=1;AF=0.166667;AN=6;AO=8;CIGAR=2X2M1X;DP=87;DPB=87;DPRA=0;EPP=20.3821;EPPR=152.842;GTI=0;LEN=1;MEANALT=2;MQM=25;MQMR=60;NS=3;NUMALT=2;ODDS=0;PAIRED=0;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=317;QR=2685;RO=69;RPL=0;RPP=20.3821;RPPR=152.842;RPR=8;RUN=1;SAF=8;SAP=20.3821;SAR=0;SRF=69;SRP=152.842;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|0:67:58,6,3:58:2256:6,3:243,123:0,-5.93842,-189.496,-7.25394,-181.149,-191.861 1|0:4:0,1,3:0:0:1,3:40,121:-12.2752,-10.3769,-10.0759,-2.18549,0,-1.2824 0|0:16:11,1,4:11:429:1,4:34,158:-9.80971,-11.2482,-46.207,0,-33.5055,-34.1921 dDocent_Contig_13805 23 . A G 745.517 . AB=0.402778;ABP=8.92153;AC=3;AF=0.5;AN=6;AO=29;CIGAR=1X;DP=72;DPB=72;DPRA=0;EPP=65.983;EPPR=96.3836;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=0.862069;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=1119;QR=1717;RO=43;RPL=0;RPP=65.983;RPPR=96.3836;RPR=29;RUN=1;SAF=29;SAP=65.983;SAR=0;SRF=43;SRP=96.3836;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:40:22,18:22:887:18:709:-52.0964,0,-68.0956 0/1:12:6,6:6:230:6:226:-17.0823,0,-17.4515 0/1:20:15,5:15:600:5:184:-10.8959,0,-48.3153 dDocent_Contig_13806 129 . A G 1074.56 . AB=0.539474;ABP=4.03889;AC=3;AF=0.5;AN=6;AO=41;CIGAR=1X;DP=76;DPB=76;DPRA=0;EPP=92.0407;EPPR=79.0118;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=1499;QR=1307;RO=35;RPL=0;RPP=92.0407;RPPR=79.0118;RPR=41;RUN=1;SAF=0;SAP=92.0407;SAR=41;SRF=0;SRP=79.0118;SRR=35;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:35:16,19:16:591:19:689:-51.7896,0,-42.9844 0/1:33:14,19:14:535:19:717:-54.9244,0,-38.5599 0/1:8:5,3:5:181:3:93:-6.26533,0,-14.2316 dDocent_Contig_13807 45 . G C 881.19 . AB=0.608696;ABP=7.73089;AC=4;AF=0.666667;AN=6;AO=29;CIGAR=1X;DP=47;DPB=47;DPRA=0;EPP=65.983;EPPR=42.0968;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=1160;QR=713;RO=18;RPL=0;RPP=65.983;RPPR=42.0968;RPR=29;RUN=1;SAF=29;SAP=65.983;SAR=0;SRF=18;SRP=42.0968;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:30:8,22:8:316:22:880:-70.4776,0,-19.774 0/1:16:10,6:10:397:6:239:-17.0689,0,-31.2684 1/1:1:0,1:0:0:1:41:-4.09457,-0.30103,0 dDocent_Contig_13808 64 . T C 3930.51 . AB=0.273973;ABP=262.159;AC=3;AF=0.5;AN=6;AO=160;CIGAR=1X;DP=584;DPB=584;DPRA=0;EPP=350.446;EPPR=921.543;GTI=0;LEN=1;MEANALT=1.33333;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=0.992908;PAO=0;PQA=0;PQR=0;PRO=0;QA=6377;QR=16770;RO=423;RPL=160;RPP=350.446;RPPR=921.543;RPR=0;RUN=1;SAF=160;SAP=350.446;SAR=0;SRF=423;SRP=921.543;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:71:49,22:49:1958:22:889:-58.9437,0,-155.04 0/1:485:352,132:352:13919:132:5248:-326.083,0,-1105.61 0/1:28:22,6:22:893:6:240:-13.547,0,-72.2474 dDocent_Contig_13809 16 . T A 749.665 . AB=0.529412;ABP=3.3935;AC=3;AF=0.5;AN=6;AO=27;CIGAR=1X;DP=51;DPB=51;DPRA=0;EPP=61.6401;EPPR=55.1256;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=3.46945e-18;PAIRED=0.925926;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=1053;QR=956;RO=24;RPL=0;RPP=61.6401;RPPR=55.1256;RPR=27;RUN=1;SAF=27;SAP=61.6401;SAR=0;SRF=24;SRP=55.1256;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:23:6,17:6:234:17:660:-52.7981,0,-14.5038 0/1:16:11,5:11:443:5:194:-13.0153,0,-35.4092 0/1:12:7,5:7:279:5:199:-14.676,0,-21.8692 dDocent_Contig_13810 25 . C T 183.047 . AB=0.296296;ABP=12.7417;AC=1;AF=0.166667;AN=6;AO=9;CIGAR=1X;DP=86;DPB=86;DPRA=1.03571;EPP=22.5536;EPPR=170.214;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=3.46945e-18;PAIRED=0;PAIREDR=0.441558;PAO=0;PQA=0;PQR=0;PRO=0;QA=350;QR=3060;RO=77;RPL=0;RPP=22.5536;RPPR=170.214;RPR=9;RUN=1;SAF=9;SAP=22.5536;SAR=0;SRF=77;SRP=170.214;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:28:28,0:28:1094:0:0:0,-8.42884,-98.7461 0/0:31:30,1:30:1198:1:40:0,-5.33625,-104.101 0/1:27:19,8:19:768:8:310:-20.1286,0,-61.3127 dDocent_Contig_13811 11 . C T 33.1577 . AB=0.113208;ABP=71.8828;AC=2;AF=0.333333;AN=6;AO=6;CIGAR=1X;DP=61;DPB=61;DPRA=3.3125;EPP=16.0391;EPPR=122.441;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=57.5455;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=0.909091;PAO=0;PQA=0;PQR=0;PRO=0;QA=245;QR=2186;RO=55;RPL=0;RPP=16.0391;RPPR=122.441;RPR=6;RUN=1;SAF=6;SAP=16.0391;SAR=0;SRF=55;SRP=122.441;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:32:29,3:29:1160:3:123:-1.83183,0,-91.4642 0/1:21:18,3:18:714:3:122:-5.05086,0,-58.2595 0/0:8:8,0:8:312:0:0:0,-2.40824,-28.4406 dDocent_Contig_13812 64 . G T 72.2033 . AB=0.25;ABP=11.6962;AC=2;AF=0.333333;AN=6;AO=4;CIGAR=1X;DP=19;DPB=19;DPRA=2.66667;EPP=11.6962;EPPR=35.5824;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=164;QR=572;RO=15;RPL=4;RPP=11.6962;RPPR=35.5824;RPR=0;RUN=1;SAF=4;SAP=11.6962;SAR=0;SRF=15;SRP=35.5824;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:9:7,2:7:260:2:82:-5.07041,0,-21.0375 0/0:3:3,0:3:110:0:0:0,-0.90309,-10.2572 0/1:7:5,2:5:202:2:82:-5.67247,0,-16.4547 dDocent_Contig_13813 20 . C T 35.9019 . AB=0.106667;ABP=103.796;AC=2;AF=0.333333;AN=6;AO=8;CIGAR=1X;DP=95;DPB=95;DPRA=1.875;EPP=20.3821;EPPR=191.928;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=59.4253;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=0.942529;PAO=0;PQA=0;PQR=0;PRO=0;QA=319;QR=3476;RO=87;RPL=0;RPP=20.3821;RPPR=191.928;RPR=8;RUN=1;SAF=8;SAP=20.3821;SAR=0;SRF=87;SRP=191.928;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:45:40,5:40:1597:5:202:-5.01552,0,-130.414 0/0:20:20,0:20:802:0:0:0,-6.0206,-72.3614 0/1:30:27,3:27:1077:3:117:-1.87768,0,-88.1384 dDocent_Contig_13814 198 . T G 63.5381 . AB=0.210526;ABP=16.8392;AC=1;AF=0.25;AN=4;AO=4;CIGAR=1X;DP=26;DPB=26;DPRA=2.71429;EPP=11.6962;EPPR=50.7827;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=2;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=149;QR=842;RO=22;RPL=4;RPP=11.6962;RPPR=50.7827;RPR=0;RUN=1;SAF=0;SAP=11.6962;SAR=4;SRF=0;SRP=50.7827;SRR=22;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:19:15,4:15:578:4:149:-8.05276,0,-46.6432 ./.:.:.:.:.:.:.:. 0/0:7:7,0:7:264:0:0:0,-2.10721,-24.1179 dDocent_Contig_13815 30 . G A 375.347 . AB=0.301887;ABP=21.0786;AC=3;AF=0.5;AN=6;AO=16;CIGAR=1X;DP=53;DPB=53;DPRA=0;EPP=37.7539;EPPR=83.3548;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=0.891892;PAO=0;PQA=0;PQR=0;PRO=0;QA=638;QR=1482;RO=37;RPL=0;RPP=37.7539;RPPR=83.3548;RPR=16;RUN=1;SAF=16;SAP=37.7539;SAR=0;SRF=37;SRP=83.3548;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:19:8,11:8:323:11:441:-34.3245,0,-23.7194 0/1:8:7,1:7:283:1:40:-1.58744,0,-23.4353 0/1:26:22,4:22:876:4:157:-6.6804,0,-71.3195 dDocent_Contig_13818 159 . A T 726.15 . AB=0.415385;ABP=7.05258;AC=3;AF=0.5;AN=6;AO=27;CIGAR=1X;DP=65;DPB=65;DPRA=0;EPP=61.6401;EPPR=85.5263;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=1059;QR=1481;RO=38;RPL=27;RPP=61.6401;RPPR=85.5263;RPR=0;RUN=1;SAF=0;SAP=61.6401;SAR=27;SRF=0;SRP=85.5263;SRR=38;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:34:11,23:11:442:23:902:-71.2482,0,-29.8999 0/1:9:7,2:7:259:2:80:-4.88252,0,-20.9463 0/1:22:20,2:20:780:2:77:-0.68554,0,-63.8893 dDocent_Contig_13819 15 . G A 49.3792 . AB=0.272727;ABP=7.94546;AC=2;AF=0.333333;AN=6;AO=3;CIGAR=1X;DP=17;DPB=17;DPRA=0.916667;EPP=9.52472;EPPR=33.4109;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=0.666667;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=121;QR=557;RO=14;RPL=0;RPP=9.52472;RPPR=33.4109;RPR=3;RUN=1;SAF=3;SAP=9.52472;SAR=0;SRF=14;SRP=33.4109;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:8:7,1:7:285:1:41:-1.68633,0,-23.6162 0/0:6:6,0:6:231:0:0:0,-1.80618,-21.1557 0/1:3:1,2:1:41:2:80:-6.6887,0,-3.19148 dDocent_Contig_13820 8 . C A 75.6774 . AB=0.21875;ABP=24.9965;AC=2;AF=0.333333;AN=6;AO=7;CIGAR=1X;DP=44;DPB=44;DPRA=1.33333;EPP=18.2106;EPPR=83.3548;GTI=0;LEN=1;MEANALT=1;MQM=32.5714;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=0.142857;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=256;QR=1421;RO=37;RPL=0;RPP=18.2106;RPPR=83.3548;RPR=7;RUN=1;SAF=7;SAP=18.2106;SAR=0;SRF=37;SRP=83.3548;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:12:12,0:12:464:0:0:0,-3.61236,-42.1115 0/1:12:7,5:7:269:5:182:-9.38946,0,-20.9623 0/1:20:18,2:18:688:2:74:-0.180625,0,-56.2314 dDocent_Contig_13821 24 . G A 38.2747 . AB=0.173913;ABP=24.253;AC=3;AF=0.5;AN=6;AO=4;CIGAR=1X;DP=23;DPB=23;DPRA=0;EPP=11.6962;EPPR=44.2683;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=1.73472e-18;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=151;QR=737;RO=19;RPL=0;RPP=11.6962;RPPR=44.2683;RPR=4;RUN=1;SAF=4;SAP=11.6962;SAR=0;SRF=19;SRP=44.2683;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:12:11,1:11:416:1:41:-0.482207,0,-34.1603 0/1:8:6,2:6:241:2:69:-4.1443,0,-19.6584 0/1:3:2,1:2:80:1:41:-3.19148,0,-6.6887 dDocent_Contig_13822 15 . T A 643.297 . AB=0.4;ABP=8.22183;AC=3;AF=0.5;AN=6;AO=24;CIGAR=2X2M1X;DP=60;DPB=60;DPRA=0;EPP=55.1256;EPPR=76.8404;GTI=0;LEN=1;MEANALT=1.66667;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=0.916667;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=964;QR=1352;RO=34;RPL=0;RPP=55.1256;RPPR=76.8404;RPR=24;RUN=1;SAF=24;SAP=55.1256;SAR=0;SRF=34;SRP=76.8404;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|1:40:22,17:22:869:17:683:-49.6519,0,-66.373 0|1:7:4,3:4:160:3:121:-9.17299,0,-12.6766 0|1:13:8,4:8:323:4:160:-11.0277,0,-25.7109 dDocent_Contig_13824 42 . T C 524.343 . AB=0.34375;ABP=16.582;AC=3;AF=0.5;AN=6;AO=22;CIGAR=1X;DP=64;DPB=64;DPRA=0;EPP=50.7827;EPPR=94.2121;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=846;QR=1668;RO=42;RPL=0;RPP=50.7827;RPPR=94.2121;RPR=22;RUN=1;SAF=22;SAP=50.7827;SAR=0;SRF=42;SRP=94.2121;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:36:25,11:25:998:11:428:-28.0332,0,-79.2822 0/1:17:10,7:10:390:7:257:-18.3599,0,-30.3323 0/1:11:7,4:7:280:4:161:-11.5642,0,-22.2604 dDocent_Contig_13826 25 . T G 78.7559 . AB=0.148936;ABP=53.3238;AC=1;AF=0.166667;AN=6;AO=8;CIGAR=1X;DP=86;DPB=86;DPRA=1.29167;EPP=20.3821;EPPR=163.811;GTI=0;LEN=1;MEANALT=1;MQM=55.625;MQMR=59.2179;NS=3;NUMALT=1;ODDS=3.46945e-18;PAIRED=0.75;PAIREDR=0.974359;PAO=0;PQA=0;PQR=0;PRO=0;QA=299;QR=3084;RO=78;RPL=0;RPP=20.3821;RPPR=172.385;RPR=8;RUN=1;SAF=8;SAP=20.3821;SAR=0;SRF=77;SRP=163.811;SRR=1;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:47:40,7:40:1561:7:258:-9.39797,0,-125.402 0/0:15:14,1:14:555:1:41:0,-0.456839,-46.2353 0/0:24:24,0:24:968:0:0:0,-7.22472,-87.4207 dDocent_Contig_13827 77 . G A 80.1223 . AB=0.175;ABP=39.7082;AC=2;AF=0.333333;AN=6;AO=7;CIGAR=1X;DP=46;DPB=46;DPRA=3.33333;EPP=18.2106;EPPR=87.6977;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=51;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=0.820513;PAO=0;PQA=0;PQR=0;PRO=0;QA=254;QR=1383;RO=39;RPL=7;RPP=18.2106;RPPR=87.6977;RPR=0;RUN=1;SAF=7;SAP=18.2106;SAR=0;SRF=39;SRP=87.6977;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:21:18,3:18:645:3:110:-3.93937,0,-45.3553 0/0:6:6,0:6:204:0:0:0,-1.80618,-12.4557 0/1:19:15,4:15:534:4:144:-7.59405,0,-40.8588 dDocent_Contig_13828 25 . T G 149.265 . AB=0.428571;ABP=3.63072;AC=2;AF=0.333333;AN=6;AO=6;CIGAR=1X;DP=21;DPB=21;DPRA=1;EPP=16.0391;EPPR=35.5824;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=243;QR=596;RO=15;RPL=0;RPP=16.0391;RPPR=35.5824;RPR=6;RUN=1;SAF=6;SAP=16.0391;SAR=0;SRF=15;SRP=35.5824;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:7:7,0:7:276:0:0:0,-2.10721,-25.2067 0/1:3:1,2:1:41:2:82:-6.87659,0,-3.19148 0/1:11:7,4:7:279:4:161:-11.5636,0,-22.17 dDocent_Contig_13829 9 . T C 137.921 . AB=0.118812;ABP=257.954;AC=3;AF=0.5;AN=6;AO=24;CIGAR=1X;DP=202;DPB=202;DPRA=0;EPP=55.1256;EPPR=380.895;GTI=0;LEN=1;MEANALT=1;MQM=54.6667;MQMR=53.3202;NS=3;NUMALT=1;ODDS=0;PAIRED=0.458333;PAIREDR=0.151685;PAO=0;PQA=0;PQR=0;PRO=0;QA=900;QR=6773;RO=178;RPL=0;RPP=55.1256;RPPR=389.532;RPR=24;RUN=1;SAF=24;SAP=55.1256;SAR=0;SRF=177;SRP=380.895;SRR=1;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:101:90,11:90:3435:11:404:-6.25903,0,-262.483 0/1:34:29,5:29:1097:5:189:-6.12414,0,-84.8903 0/1:67:59,8:59:2241:8:307:-6.93183,0,-178.835 dDocent_Contig_13830 98 . N G 288.858 . AB=0;ABP=0;AC=4;AF=1;AN=4;AO=9;CIGAR=1X;DP=9;DPB=9;DPRA=0;EPP=22.5536;EPPR=0;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=0;NS=2;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=310;QR=0;RO=0;RPL=9;RPP=22.5536;RPPR=0;RPR=0;RUN=1;SAF=9;SAP=22.5536;SAR=0;SRF=0;SRP=0;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL ./.:.:.:.:.:.:.:. 1/1:8:0,8:0:0:8:275:-25.085,-2.40824,0 1/1:1:0,1:0:0:1:35:-3.49863,-0.30103,0 dDocent_Contig_13832 7 . A G 255.056 . AB=0.416667;ABP=4.45795;AC=1;AF=0.166667;AN=6;AO=14;CIGAR=1X1M;DP=103;DPB=103;DPRA=0;EPP=33.4109;EPPR=191.928;GTI=0;LEN=1;MEANALT=1.33333;MQM=60;MQMR=60;NS=3;NUMALT=2;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=501;QR=3324;RO=87;RPL=0;RPP=33.4109;RPPR=191.928;RPR=14;RUN=1;SAF=14;SAP=33.4109;SAR=0;SRF=87;SRP=191.928;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|0:46:44,0,2:44:1677:0,2:0,44:0,-13.2453,-150.963,-9.66842,-147.613,-147.011 0|1:24:14,0,10:14:537:0,10:0,380:-27.3295,-31.5439,-75.6236,0,-44.4609,-41.4506 0|0:33:29,2,2:29:1110:2,2:57,77:0,-4.25342,-94.7419,-2.35759,-89.0214,-92.9394 dDocent_Contig_13833 45 . C T 235.308 . AB=0.0821918;ABP=113.696;AC=2;AF=0.333333;AN=6;AO=6;CIGAR=4M1X4M;DP=73;DPB=74.1111;DPRA=0;EPP=16.0391;EPPR=124.613;GTI=0;LEN=1;MEANALT=2;MQM=60;MQMR=60;NS=3;NUMALT=2;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=242;QR=2177;RO=56;RPL=0;RPP=16.0391;RPPR=124.613;RPR=6;RUN=1;SAF=6;SAP=16.0391;SAR=0;SRF=56;SRP=124.613;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|0:36:26,9,1:26:998:9,1:345,41:-20.4591,0,-79.179,-24.8992,-78.5032,-106.512 0|1:9:8,0,1:8:305:0,1:0,41:-1.3853,-3.79354,-28.7837,0,-25.3965,-25.0954 0|1:28:22,1,4:22:874:1,4:38,160:-6.56077,-10.0706,-81.7205,0,-68.8411,-70.7528 dDocent_Contig_13834 69 . T C 1295.56 . AB=0.133333;ABP=38.0434;AC=3;AF=0.5;AN=6;AO=4;CIGAR=1X1M;DP=71;DPB=71;DPRA=0;EPP=11.6962;EPPR=42.0968;GTI=0;LEN=1;MEANALT=2;MQM=60;MQMR=60;NS=3;NUMALT=2;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=141;QR=645;RO=18;RPL=4;RPP=11.6962;RPPR=42.0968;RPR=0;RUN=1;SAF=4;SAP=11.6962;SAR=0;SRF=18;SRP=42.0968;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|1:41:9,31,0:9:329:31,0:1128,0:-89.4185,0,-17.5488,-92.1278,-26.8807,-119.013 0|1:19:7,10,2:7:244:10,2:358,73:-27.0813,0,-16.8199,-23.2229,-13.8621,-42.4599 0|1:11:2,7,2:2:72:7,2:236,68:-18.52,0,-3.7776,-13.6056,-0.379014,-18.8835 dDocent_Contig_13835 16 . T C 67.6392 . AB=0.16129;ABP=33.9012;AC=2;AF=0.5;AN=4;AO=5;CIGAR=1X;DP=31;DPB=31;DPRA=0;EPP=13.8677;EPPR=59.4686;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=2;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=199;QR=1048;RO=26;RPL=0;RPP=13.8677;RPPR=59.4686;RPR=5;RUN=1;SAF=5;SAP=13.8677;SAR=0;SRF=26;SRP=59.4686;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL ./.:.:.:.:.:.:.:. 0/1:22:20,2:20:803:2:76:-0.591597,0,-65.9628 0/1:9:6,3:6:245:3:123:-8.75552,0,-19.7202 dDocent_Contig_13836 12 . G A 66.7115 . AB=0.190476;ABP=20.4855;AC=1;AF=0.25;AN=4;AO=4;CIGAR=1X;DP=31;DPB=31;DPRA=2.1;EPP=11.6962;EPPR=61.6401;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=2;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=159;QR=1070;RO=27;RPL=0;RPP=11.6962;RPPR=61.6401;RPR=4;RUN=1;SAF=4;SAP=11.6962;SAR=0;SRF=27;SRP=61.6401;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:21:17,4:17:665:4:159:-8.37012,0,-53.8545 ./.:.:.:.:.:.:.:. 0/0:10:10,0:10:405:0:0:0,-3.0103,-36.8104 dDocent_Contig_13837 45 . T G 2912.1 . AB=0.766667;ABP=77.1299;AC=3;AF=0.5;AN=6;AO=92;CIGAR=1X;DP=120;DPB=120;DPRA=0;EPP=202.786;EPPR=63.8115;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=3688;QR=1116;RO=28;RPL=0;RPP=202.786;RPPR=63.8115;RPR=92;RUN=1;SAF=92;SAP=202.786;SAR=0;SRF=28;SRP=63.8115;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:82:18,64:18:709:64:2589:-208.447,0,-39.4452 0/1:19:2,17:2:81:17:681:-55.8988,0,-1.96616 0/1:19:8,11:8:326:11:418:-32.2367,0,-23.9903 dDocent_Contig_13838 1 . N G 425.278 . AB=0;ABP=0;AC=4;AF=1;AN=4;AO=12;CIGAR=1X;DP=12;DPB=12;DPRA=0;EPP=29.068;EPPR=0;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=0;NS=2;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=461;QR=0;RO=0;RPL=0;RPP=29.068;RPPR=0;RPR=12;RUN=1;SAF=12;SAP=29.068;SAR=0;SRF=0;SRP=0;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 1/1:11:0,11:0:0:11:422:-38.3291,-3.31133,0 ./.:.:.:.:.:.:.:. 1/1:1:0,1:0:0:1:39:-3.89656,-0.30103,0 dDocent_Contig_13839 158 . C A 66.3073 . AB=0.5;ABP=3.0103;AC=1;AF=0.166667;AN=6;AO=3;CIGAR=1X;DP=49;DPB=49;DPRA=0.27907;EPP=9.52472;EPPR=102.898;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=0;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=110;QR=1547;RO=46;RPL=3;RPP=9.52472;RPPR=102.898;RPR=0;RUN=1;SAF=0;SAP=9.52472;SAR=3;SRF=0;SRP=102.898;SRR=46;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:28:28,0:28:960:0:0:0,-8.42884,-86.7025 0/0:15:15,0:15:497:0:0:0,-4.51545,-45.0435 0/1:6:3,3:3:90:3:110:-8.45463,0,-6.5921 dDocent_Contig_13840 26 . C T 1575.25 . AB=0.488372;ABP=3.1618;AC=3;AF=0.5;AN=6;AO=63;CIGAR=1X;DP=129;DPB=129;DPRA=0;EPP=139.813;EPPR=146.327;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=2233;QR=2574;RO=66;RPL=0;RPP=139.813;RPPR=146.327;RPR=63;RUN=1;SAF=63;SAP=139.813;SAR=0;SRF=66;SRP=146.327;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:61:29,32:29:1155:32:1180:-88.1305,0,-85.8666 0/1:17:6,11:6:239:11:345:-26.2327,0,-16.7673 0/1:51:31,20:31:1180:20:708:-48.6847,0,-91.1144 dDocent_Contig_13842 26 . C T 608.172 . AB=0.25;ABP=59.4686;AC=2;AF=0.333333;AN=6;AO=26;CIGAR=1X;DP=114;DPB=114;DPRA=5.2;EPP=59.4686;EPPR=194.1;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=0.961538;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=1055;QR=3543;RO=88;RPL=0;RPP=59.4686;RPPR=194.1;RPR=26;RUN=1;SAF=26;SAP=59.4686;SAR=0;SRF=88;SRP=194.1;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:94:70,24:70:2829:24:973:-59.5705,0,-226.406 0/0:10:10,0:10:396:0:0:0,-3.0103,-35.9951 0/1:10:8,2:8:318:2:82:-4.76938,0,-25.9756 dDocent_Contig_13843 1 . N G 404.723 . AB=0;ABP=0;AC=4;AF=1;AN=4;AO=11;CIGAR=1X;DP=11;DPB=11;DPRA=0;EPP=26.8965;EPPR=0;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=0;NS=2;NUMALT=1;ODDS=0;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=438;QR=0;RO=0;RPL=0;RPP=26.8965;RPPR=0;RPR=11;RUN=1;SAF=11;SAP=26.8965;SAR=0;SRF=0;SRP=0;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 1/1:5:0,5:0:0:5:195:-17.923,-1.50515,0 1/1:6:0,6:0:0:6:243:-22.2482,-1.80618,0 ./.:.:.:.:.:.:.:. dDocent_Contig_13844 137 . C T 471.103 . AB=0.551724;ABP=3.68421;AC=1;AF=0.166667;AN=6;AO=16;CIGAR=1X;DP=38;DPB=38;DPRA=6.44444;EPP=37.7539;EPPR=50.7827;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=637;QR=807;RO=22;RPL=0;RPP=37.7539;RPPR=50.7827;RPR=16;RUN=1;SAF=0;SAP=37.7539;SAR=16;SRF=0;SRP=50.7827;SRR=22;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:7:7,0:7:257:0:0:0,-2.10721,-23.4818 0/1:29:13,16:13:472:16:637:-48.9338,0,-34.0832 0/0:2:2,0:2:78:0:0:0,-0.60206,-7.40347 dDocent_Contig_13845 207 . A C 89.8842 . AB=0.25;ABP=7.35324;AC=3;AF=0.5;AN=6;AO=4;CIGAR=2X;DP=17;DPB=17;DPRA=0.714286;EPP=11.6962;EPPR=31.2394;GTI=0;LEN=1;MEANALT=1;MQM=40;MQMR=7;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=133;QR=502;RO=13;RPL=4;RPP=11.6962;RPPR=31.2394;RPR=0;RUN=1;SAF=0;SAP=11.6962;SAR=4;SRF=0;SRP=31.2394;SRR=13;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 1|1:2:0,2:0:0:2:66:-6.11995,-0.60206,0 0|1:8:6,2:6:222:2:67:-3.78931,0,-1.43677 0|0:7:7,0:7:280:0:0:0,-2.10721,-4.47885 dDocent_Contig_13846 14 . A T 58.4372 . AB=0.25;ABP=9.52472;AC=1;AF=0.166667;AN=6;AO=3;CIGAR=1X;DP=84;DPB=84;DPRA=0.333333;EPP=9.52472;EPPR=123.353;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=55.5679;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=0.765432;PAO=0;PQA=0;PQR=0;PRO=0;QA=121;QR=3136;RO=81;RPL=0;RPP=9.52472;RPPR=178.9;RPR=3;RUN=1;SAF=3;SAP=9.52472;SAR=0;SRF=74;SRP=123.353;SRR=7;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:46:46,0:46:1796:0:0:0,-13.8474,-158.937 0/1:12:9,3:9:339:3:121:-7.66763,0,-25.8964 0/0:26:26,0:26:1001:0:0:0,-7.82678,-88.6479 dDocent_Contig_13847 39 . C T 95.9589 . AB=0.145833;ABP=55.3066;AC=2;AF=0.333333;AN=6;AO=7;CIGAR=1X;DP=81;DPB=81;DPRA=0.727273;EPP=18.2106;EPPR=163.699;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=284;QR=2971;RO=74;RPL=0;RPP=18.2106;RPPR=163.699;RPR=7;RUN=1;SAF=7;SAP=18.2106;SAR=0;SRF=74;SRP=163.699;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:37:31,6:31:1250:6:243:-11.1101,0,-101.631 0/1:11:10,1:10:407:1:41:-0.783237,0,-33.6787 0/0:33:33,0:33:1314:0:0:0,-9.93399,-118.525 dDocent_Contig_13848 36 . A T 766.241 . AB=0.352941;ABP=18.977;AC=3;AF=0.5;AN=6;AO=30;CIGAR=1X;DP=85;DPB=85;DPRA=0;EPP=68.1545;EPPR=122.441;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=1185;QR=2073;RO=55;RPL=0;RPP=68.1545;RPPR=122.441;RPR=30;RUN=1;SAF=30;SAP=68.1545;SAR=0;SRF=55;SRP=122.441;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:67:42,25:42:1579:25:989:-69.1399,0,-122.214 0/1:3:1,2:1:39:2:82:-6.87659,0,-2.99347 0/1:15:12,3:12:455:3:114:-6.11603,0,-36.7821 dDocent_Contig_13849 40 . G A 279.526 . AB=0.162393;ABP=118.841;AC=3;AF=0.5;AN=6;AO=19;CIGAR=1X;DP=117;DPB=117;DPRA=0;EPP=44.2683;EPPR=215.815;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=751;QR=3823;RO=98;RPL=0;RPP=44.2683;RPPR=215.815;RPR=19;RUN=1;SAF=19;SAP=44.2683;SAR=0;SRF=98;SRP=215.815;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:80:70,10:70:2722:10:404:-12.6374,0,-221.024 0/1:15:9,6:9:359:6:228:-16.3657,0,-28.1571 0/1:22:19,3:19:742:3:119:-4.47184,0,-60.4818 dDocent_Contig_13851 12 . A T 233.855 . AB=0.166667;ABP=89.8692;AC=3;AF=0.5;AN=6;AO=15;CIGAR=1X;DP=90;DPB=90;DPRA=0;EPP=35.5824;EPPR=165.871;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=609;QR=2889;RO=75;RPL=0;RPP=35.5824;RPPR=165.871;RPR=15;RUN=1;SAF=15;SAP=35.5824;SAR=0;SRF=75;SRP=165.871;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:44:38,6:38:1501:6:245:-9.18415,0,-122.089 0/1:17:15,2:15:602:2:80:-2.47407,0,-49.4006 0/1:29:22,7:22:786:7:284:-17.2041,0,-62.3087 dDocent_Contig_13852 8 . C T 77.769 . AB=0.25;ABP=11.6962;AC=1;AF=0.166667;AN=6;AO=4;CIGAR=1X;DP=69;DPB=69;DPRA=0.603774;EPP=11.6962;EPPR=144.156;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=0;PAIREDR=0.984615;PAO=0;PQA=0;PQR=0;PRO=0;QA=156;QR=2485;RO=65;RPL=0;RPP=11.6962;RPPR=144.156;RPR=4;RUN=1;SAF=4;SAP=11.6962;SAR=0;SRF=65;SRP=144.156;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:37:37,0:37:1404:0:0:0,-11.1381,-126.64 0/1:16:12,4:12:460:4:156:-9.60081,0,-36.9336 0/0:16:16,0:16:621:0:0:0,-4.81648,-56.2301 dDocent_Contig_13853 18 . G A 97.2521 . AB=0.1875;ABP=30.1537;AC=1;AF=0.166667;AN=6;AO=6;CIGAR=1X;DP=57;DPB=57;DPRA=2.56;EPP=16.0391;EPPR=113.755;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=228;QR=1985;RO=51;RPL=0;RPP=16.0391;RPPR=113.755;RPR=6;RUN=1;SAF=6;SAP=16.0391;SAR=0;SRF=51;SRP=113.755;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:32:26,6:26:1006:6:228:-11.2481,0,-81.1963 0/0:13:13,0:13:507:0:0:0,-3.91339,-45.9696 0/0:12:12,0:12:472:0:0:0,-3.61236,-42.8297 dDocent_Contig_13854 115 . C T 1862.51 . AB=0.193798;ABP=108.066;AC=4;AF=0.666667;AN=6;AO=25;CIGAR=1X6M;DP=129;DPB=129;DPRA=0;EPP=57.2971;EPPR=50.7827;GTI=0;LEN=1;MEANALT=3.66667;MQM=58.6;MQMR=60;NS=3;NUMALT=3;ODDS=0;PAIRED=0.44;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=770;QR=732;RO=22;RPL=0;RPP=57.2971;RPPR=50.7827;RPR=25;RUN=1;SAF=0;SAP=57.2971;SAR=25;SRF=0;SRP=50.7827;SRR=22;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 1|1:80:11,49,1,15:11:372:49,1,15:1646,28,489:-137.32,-9.31556,-24.732,-138.684,-37.5365,-168.543,-101.152,0,-129.365,-126.797 0|1:16:5,6,0,5:5:168:6,0,5:184,0,141:-13.2242,0,-11.8312,-14.7294,-13.6374,-28.3525,-3.5704,-2.4945,-17.1943,-15.6892 0|1:33:6,17,4,5:6:192:17,4,5:548,124,140:-41.2293,0,-10.3642,-34.1669,-6.61534,-48.4344,-31.95,-4.39945,-38.554,-45.9163 dDocent_Contig_13855 9 . T A 217.697 . AB=0.149606;ABP=138.445;AC=3;AF=0.5;AN=6;AO=19;CIGAR=1X;DP=127;DPB=127;DPRA=0;EPP=44.2683;EPPR=237.529;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=0.972222;PAO=0;PQA=0;PQR=0;PRO=0;QA=716;QR=4121;RO=108;RPL=0;RPP=44.2683;RPPR=237.529;RPR=19;RUN=1;SAF=19;SAP=44.2683;SAR=0;SRF=108;SRP=237.529;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:93:81,12:81:3101:12:451:-12.9404,0,-251.249 0/1:16:12,4:12:450:4:154:-9.41711,0,-36.0279 0/1:18:15,3:15:570:3:111:-4.93495,0,-46.2206 dDocent_Contig_13856 10 . G A 95.293 . AB=0;ABP=0;AC=0;AF=0;AN=6;AO=10;CIGAR=1M1X6M;DP=195;DPB=195.25;DPRA=0;EPP=24.725;EPPR=335.246;GTI=0;LEN=1;MEANALT=5.5;MQM=22.8;MQMR=46.9869;NS=3;NUMALT=7;ODDS=1.38778e-17;PAIRED=0;PAIREDR=0.359477;PAO=0;PQA=0;PQR=0;PRO=0;QA=209;QR=6014;RO=153;RPL=0;RPP=24.725;RPPR=335.246;RPR=10;RUN=1;SAF=10;SAP=24.725;SAR=0;SRF=153;SRP=335.246;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|0:113:98,0,0,7,0,1,0,2:98:3856:0,0,7,0,1,0,2:0,0,161,0,38,0,81:0,-29.5009,-296.163,-29.5009,-296.163,-296.163,-18.5896,-285.202,-285.202,-283.095,-29.5009,-296.163,-296.163,-285.202,-296.163,-26.6474,-293.315,-293.315,-282.354,-293.315,-293.014,-29.5009,-296.163,-296.163,-285.202,-296.163,-293.315,-296.163,-22.8017,-289.483,-289.483,-278.521,-289.483,-286.634,-289.483,-288.881 0|0:37:21,3,2,0,2,6,0,2:21:817:3,2,0,2,6,0,2:118,78,0,78,223,0,80:-11.353,-14.0325,-73.5018,-11.2803,-68.0166,-71.0785,-17.6746,-74.4049,-71.6805,-78.0696,-11.255,-67.9914,-65.2659,-71.6553,-71.0533,0,-56.7457,-54.0175,-60.4074,-53.9923,-58.6012,-17.6746,-74.4049,-71.6805,-78.0696,-71.6553,-60.4074,-78.0696,-11.0752,-67.8123,-65.0869,-71.4764,-65.0617,-53.8132,-71.4764,-70.8743 0|0:45:34,0,0,3,0,2,3,1:34:1341:0,0,3,0,2,3,1:0,0,48,0,47,115,41:0,-10.235,-113.488,-10.235,-113.488,-113.488,-7.66506,-110.884,-110.884,-109.981,-10.235,-113.488,-113.488,-110.884,-113.488,-6.84636,-110.096,-110.096,-107.494,-110.096,-109.494,-0.750923,-104.047,-104.047,-101.444,-104.047,-100.656,-103.144,-6.8361,-110.103,-110.103,-107.499,-110.103,-106.711,-100.661,-109.802 dDocent_Contig_13858 8 . C T 32.7212 . AB=0.131579;ABP=47.8112;AC=2;AF=0.333333;AN=6;AO=5;CIGAR=1X;DP=52;DPB=52;DPRA=1.35714;EPP=13.8677;EPPR=105.07;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=194;QR=1819;RO=47;RPL=0;RPP=13.8677;RPPR=105.07;RPR=5;RUN=1;SAF=5;SAP=13.8677;SAR=0;SRF=47;SRP=105.07;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:14:12,2:12:460:2:77:-3.09472,0,-37.5358 0/1:24:21,3:21:816:3:117:-3.68566,0,-66.5404 0/0:14:14,0:14:543:0:0:0,-4.21442,-49.216 dDocent_Contig_13859 8 . C T 77.7334 . AB=0.108333;ABP=162.903;AC=2;AF=0.333333;AN=6;AO=15;CIGAR=1X3M1X;DP=144;DPB=144;DPRA=0;EPP=35.5824;EPPR=274.444;GTI=0;LEN=1;MEANALT=2;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=582;QR=4879;RO=125;RPL=0;RPP=35.5824;RPPR=274.444;RPR=15;RUN=1;SAF=15;SAP=35.5824;SAR=0;SRF=125;SRP=274.444;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|1:103:91,9:91:3564:9:348:-1.18335,0,-290.346 0|1:17:13,4:13:494:4:159:-9.57482,0,-39.687 0|0:24:21,2:21:821:2:75:0,-0.188036,-67.0875 dDocent_Contig_13861 55 . G C 36.5156 . AB=0.285714;ABP=8.59409;AC=2;AF=0.333333;AN=6;AO=4;CIGAR=1X;DP=23;DPB=23;DPRA=0.777778;EPP=3.0103;EPPR=44.2683;GTI=0;LEN=1;MEANALT=1;MQM=35;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=0.5;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=158;QR=731;RO=19;RPL=4;RPP=11.6962;RPPR=44.2683;RPR=0;RUN=1;SAF=2;SAP=3.0103;SAR=2;SRF=19;SRP=44.2683;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:11:8,3:8:321:3:121:-5.17254,0,-25.9468 0/1:3:2,1:2:69:1:37:-0.0961309,0,-5.64649 0/0:9:9,0:9:341:0:0:0,-2.70927,-31.0405 dDocent_Contig_13864 115 . T C 88.3065 . AB=0.1875;ABP=16.582;AC=0;AF=0;AN=6;AO=3;CIGAR=2X2M1X3M;DP=60;DPB=60;DPRA=1.14286;EPP=9.52472;EPPR=65.983;GTI=0;LEN=1;MEANALT=6;MQM=6.66667;MQMR=55.6207;NS=3;NUMALT=4;ODDS=6.93889e-18;PAIRED=0;PAIREDR=0.724138;PAO=0;PQA=0;PQR=0;PRO=0;QA=20;QR=1039;RO=29;RPL=0;RPP=9.52472;RPPR=65.983;RPR=3;RUN=1;SAF=0;SAP=9.52472;SAR=3;SRF=0;SRP=65.983;SRR=29;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|0:30:16,0,0,9,5:16:572:0,0,9,5:0,0,308,141:-5.05583,-9.87231,-56.3195,-9.87231,-56.3195,-56.3195,-1.45151,-47.8833,-47.8833,-45.1741,0,-46.4919,-46.4919,-38.0762,-44.9868 0|0:14:10,0,0,1,0:10:359:0,0,1,0:0,0,37,0:0,-3.0103,-32.2868,-3.0103,-32.2868,-32.2868,-2.16195,-31.433,-31.433,-31.132,-3.0103,-32.2868,-32.2868,-31.433,-32.2868 0|0:16:3,3,2,2,4:3:108:3,2,2,4:20,74,74,116:-7.29246,-8.0137,-15.7783,-4.85196,-13.3509,-12.9251,-6.28586,-14.7848,-11.6226,-14.356,0,-8.51782,-5.34894,-6.78428,-7.48633 dDocent_Contig_13865 31 . C T 181.581 . AB=0.416667;ABP=3.73412;AC=2;AF=0.333333;AN=6;AO=5;CIGAR=1X3M13D3M1X;DP=32;DPB=28.2857;DPRA=0;EPP=13.8677;EPPR=48.6112;GTI=0;LEN=1;MEANALT=1.5;MQM=60;MQMR=60;NS=3;NUMALT=2;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=193;QR=806;RO=21;RPL=0;RPP=13.8677;RPPR=48.6112;RPR=5;RUN=1;SAF=5;SAP=13.8677;SAR=0;SRF=21;SRP=48.6112;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|0:20:15,0,4:15:573:0,4:0,164:-9.22844,-13.7439,-60.7702,0,-47.2254,-46.0213 0|1:3:1,2,0:1:40:2,0:80,0:-6.6887,0,-3.09259,-6.98973,-3.69465,-10.2848 0|1:9:5,3,0:5:193:3,0:113,0:-7.75227,0,-14.9515,-9.25742,-15.8546,-25.1118 dDocent_Contig_13867 44 . G C 1229.6 . AB=0.111111;ABP=97.59;AC=0;AF=0;AN=6;AO=8;CIGAR=2X2M1X;DP=94;DPB=94;DPRA=0;EPP=20.3821;EPPR=70.3259;GTI=0;LEN=1;MEANALT=3.5;MQM=60;MQMR=60;NS=3;NUMALT=4;ODDS=1.38778e-17;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=302;QR=1186;RO=31;RPL=0;RPP=20.3821;RPPR=70.3259;RPR=8;RUN=1;SAF=8;SAP=20.3821;SAR=0;SRF=31;SRP=70.3259;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|0:58:16,7,5,30,0:16:615:7,5,30,0:281,184,1190,0:-93.1397,-74.8001,-123.179,-82.9189,-110.247,-131.898,0,-27.3267,-35.4496,-41.4556,-97.9561,-125.286,-133.403,-50.4865,-148.442 0|0:14:5,3,3,2,1:5:193:3,3,2,1:123,118,78,40:-8.65259,0,-14.9432,-0.453818,-6.13842,-15.3933,-3.74867,-9.43475,-9.88581,-18.9899,-6.86252,-12.5503,-13.0008,-16.2964,-22.4063 0|0:22:10,1,0,9,2:10:378:1,0,9,2:40,0,360,81:-26.642,-26.3573,-57.0293,-29.6523,-57.3303,-60.6259,0,-27.6681,-30.9646,-28.2553,-22.9723,-50.6496,-53.9453,-24.2816,-53.3432 dDocent_Contig_13870 12 . C A 267.322 . AB=0.0714286;ABP=70.0157;AC=1;AF=0.166667;AN=6;AO=3;CIGAR=1X1M1X4M;DP=77;DPB=77;DPRA=0;EPP=9.52472;EPPR=115.927;GTI=0;LEN=1;MEANALT=2.5;MQM=60;MQMR=60;NS=3;NUMALT=4;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=116;QR=2005;RO=52;RPL=0;RPP=9.52472;RPPR=115.927;RPR=3;RUN=1;SAF=3;SAP=9.52472;SAR=0;SRF=52;SRP=115.927;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|0:31:19,1,3,5,3:19:748:1,3,5,3:39,121,184,123:-9.3084,-11.822,-73.0544,-5.04903,-63.3799,-65.6827,0,-58.3172,-51.5477,-60.0176,-4.86884,-63.2012,-56.4312,-51.3688,-65.504 0|1:11:9,2,0,0,0:9:348:2,0,0,0:77,0,0,0:-3.99781,0,-28.3666,-6.70708,-28.9687,-35.2908,-6.70708,-28.9687,-35.2908,-35.2908,-6.70708,-28.9687,-35.2908,-35.2908,-35.2908 0|0:35:24,0,1,8,2:24:909:0,1,8,2:0,40,318,82:-18.9474,-26.1721,-100.674,-22.877,-97.379,-97.0779,0,-74.4922,-71.1964,-72.0839,-19.4018,-93.9048,-90.6092,-67.7218,-93.3028 dDocent_Contig_13871 62 . T C 937.875 . AB=0.25;ABP=18.2106;AC=1;AF=0.166667;AN=6;AO=7;CIGAR=1M1D1M2X3M;DP=54;DPB=49.375;DPRA=0;EPP=18.2106;EPPR=39.9253;GTI=0;LEN=1;MEANALT=2;MQM=60;MQMR=60;NS=3;NUMALT=2;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=274;QR=650;RO=17;RPL=7;RPP=18.2106;RPPR=39.9253;RPR=0;RUN=1;SAF=7;SAP=18.2106;SAR=0;SRF=17;SRP=39.9253;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 1|0:28:5,7,16:5:196:7,16:274,645:-58.0784,-37.0575,-51.0652,-6.4114,0,-17.7127 0|0:13:4,0,9:4:152:0,9:0,341:-27.1307,-28.3349,-40.7994,0,-12.8439,-10.1346 0|0:13:8,0,5:8:302:0,5:0,196:-14.1013,-16.5096,-41.2488,0,-25.1253,-23.6201 dDocent_Contig_13872 15 . T C 195.31 . AB=0.272727;ABP=17.8158;AC=2;AF=0.333333;AN=6;AO=9;CIGAR=1M1D1M1X;DP=37;DPB=34.75;DPRA=4.125;EPP=22.5536;EPPR=63.8115;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=358;QR=1103;RO=28;RPL=0;RPP=22.5536;RPPR=63.8115;RPR=9;RUN=1;SAF=9;SAP=22.5536;SAR=0;SRF=28;SRP=63.8115;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|1:23:16,7:16:625:7:276:-18.2842,0,-49.6602 0|0:4:4,0:4:159:0:0:0,-1.20412,-14.6921 0|1:10:8,2:8:319:2:82:-4.76938,0,-26.066 dDocent_Contig_13873 98 . N A 109.109 . AB=0;ABP=0;AC=2;AF=1;AN=2;AO=3;CIGAR=1X;DP=3;DPB=3;DPRA=0;EPP=9.52472;EPPR=0;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=0;NS=1;NUMALT=1;ODDS=6.68461;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=117;QR=0;RO=0;RPL=3;RPP=9.52472;RPPR=0;RPR=0;RUN=1;SAF=0;SAP=9.52472;SAR=3;SRF=0;SRP=0;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 1/1:3:0,3:0:0:3:117:-10.9104,-0.90309,0 ./.:.:.:.:.:.:.:. ./.:.:.:.:.:.:.:. dDocent_Contig_13874 98 . N A 94.2065 . AB=0;ABP=0;AC=4;AF=1;AN=4;AO=4;CIGAR=1X;DP=4;DPB=4;DPRA=0;EPP=11.6962;EPPR=0;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=0;NS=2;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=96;QR=0;RO=0;RPL=4;RPP=11.6962;RPPR=0;RPR=0;RUN=1;SAF=4;SAP=11.6962;SAR=0;SRF=0;SRP=0;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 1/1:2:0,2:0:0:2:60:-5.69897,-0.60206,0 ./.:.:.:.:.:.:.:. 1/1:2:0,2:0:0:2:36:-3.41948,-0.60206,0 dDocent_Contig_13875 27 . A C 115.488 . AB=0;ABP=0;AC=2;AF=0.333333;AN=6;AO=3;CIGAR=1X;DP=27;DPB=27;DPRA=0.25;EPP=9.52472;EPPR=55.1256;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=122;QR=932;RO=24;RPL=0;RPP=9.52472;RPPR=55.1256;RPR=3;RUN=1;SAF=3;SAP=9.52472;SAR=0;SRF=24;SRP=55.1256;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:12:12,0:12:472:0:0:0,-3.61236,-42.8293 1/1:3:0,3:0:0:3:122:-11.3725,-0.90309,0 0/0:12:12,0:12:460:0:0:0,-3.61236,-41.7451 dDocent_Contig_13876 107 . N A 65.5375 . AB=0;ABP=0;AC=2;AF=1;AN=2;AO=2;CIGAR=1X;DP=2;DPB=2;DPRA=0;EPP=7.35324;EPPR=0;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=0;NS=1;NUMALT=1;ODDS=5.99146;PAIRED=1;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=69;QR=0;RO=0;RPL=0;RPP=7.35324;RPPR=0;RPR=2;RUN=1;SAF=0;SAP=7.35324;SAR=2;SRF=0;SRP=0;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL ./.:.:.:.:.:.:.:. ./.:.:.:.:.:.:.:. 1/1:2:0,2:0:0:2:69:-6.55266,-0.60206,0 dDocent_Contig_13877 131 . T A 3256.35 . AB=0.811594;ABP=61.1995;AC=4;AF=0.666667;AN=6;AO=121;CIGAR=1X1M1X;DP=138;DPB=138;DPRA=0;EPP=265.758;EPPR=39.9253;GTI=0;LEN=1;MEANALT=1;MQM=59.9669;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=0;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=4015;QR=582;RO=17;RPL=0;RPP=265.758;RPPR=39.9253;RPR=121;RUN=1;SAF=0;SAP=265.758;SAR=121;SRF=0;SRP=39.9253;SRR=17;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 1|1:69:4,65:4:133:65:2133:-179.935,-8.47231,0 0|1:35:7,28:7:242:28:944:-74.7324,0,-11.5817 0|1:34:6,28:6:207:28:938:-74.4906,0,-8.73316 dDocent_Contig_13879 20 . T A 193.282 . AB=0.151163;ABP=93.9091;AC=2;AF=0.333333;AN=6;AO=13;CIGAR=1M1X1M;DP=108;DPB=118;DPRA=1.95455;EPP=31.2394;EPPR=194.1;GTI=0;LEN=1;MEANALT=2.5;MQM=60;MQMR=60;NS=3;NUMALT=2;ODDS=0;PAIRED=1;PAIREDR=0.977273;PAO=0;PQA=0;PQR=0;PRO=0;QA=518;QR=3517;RO=88;RPL=0;RPP=31.2394;RPPR=194.1;RPR=13;RUN=1;SAF=13;SAP=31.2394;SAR=0;SRF=88;SRP=194.1;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|1:73:59,3,10:59:2360:3,10:112,398:-15.0181,-23.6138,-217.108,0,-185.244,-191.403 0|1:13:7,3,3:7:280:3,3:87,120:-7.83291,-3.07314,-25.2348,0,-16.2527,-22.2385 0|0:22:22,0,0:22:877:0,0:0,0:0,-6.62266,-79.2403,-6.62266,-79.2403,-79.2403 dDocent_Contig_13880 13 . G A 45.4217 . AB=0.222222;ABP=15.074;AC=2;AF=0.333333;AN=6;AO=4;CIGAR=1X;DP=25;DPB=25;DPRA=1.28571;EPP=11.6962;EPPR=48.6112;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=142;QR=834;RO=21;RPL=0;RPP=11.6962;RPPR=48.6112;RPR=4;RUN=1;SAF=4;SAP=11.6962;SAR=0;SRF=21;SRP=48.6112;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:11:9,2:9:367:2:72:-3.52299,0,-30.0839 0/0:7:7,0:7:275:0:0:0,-2.10721,-25.1157 0/1:7:5,2:5:192:2:70:-4.5373,0,-15.5375 dDocent_Contig_13881 7 . A C 113.877 . AB=0;ABP=0;AC=2;AF=0.333333;AN=6;AO=3;CIGAR=1X;DP=17;DPB=17;DPRA=0.428571;EPP=9.52472;EPPR=33.4109;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=117;QR=538;RO=14;RPL=0;RPP=9.52472;RPPR=33.4109;RPR=3;RUN=1;SAF=3;SAP=9.52472;SAR=0;SRF=14;SRP=33.4109;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 1/1:3:0,3:0:0:3:117:-10.9104,-0.90309,0 0/0:7:7,0:7:269:0:0:0,-2.10721,-24.5746 0/0:7:7,0:7:269:0:0:0,-2.10721,-24.5746 dDocent_Contig_13882 11 . C A 6275.03 . AB=0.893401;ABP=267.831;AC=4;AF=0.666667;AN=6;AO=191;CIGAR=1X;DP=212;DPB=212;DPRA=0;EPP=417.762;EPPR=48.6112;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=7666;QR=842;RO=21;RPL=0;RPP=417.762;RPPR=48.6112;RPR=191;RUN=1;SAF=191;SAP=417.762;SAR=0;SRF=21;SRP=48.6112;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:119:12,107:12:489:107:4298:-350.941,0,-8.53874 1/1:15:0,15:0:0:15:612:-55.4171,-4.51545,0 0/1:78:9,69:9:353:69:2756:-224.668,0,-8.64706 dDocent_Contig_13883 56 . T C 85.248 . AB=0.176471;ABP=33.9218;AC=2;AF=0.333333;AN=6;AO=6;CIGAR=1X;DP=40;DPB=40;DPRA=2.83333;EPP=16.0391;EPPR=76.8404;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=3.46945e-18;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=239;QR=1130;RO=34;RPL=6;RPP=16.0391;RPPR=76.8404;RPR=0;RUN=1;SAF=6;SAP=16.0391;SAR=0;SRF=34;SRP=76.8404;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:22:19,3:19:632:3:119:-4.47184,0,-50.5646 0/0:6:6,0:6:184:0:0:0,-1.80618,-16.8575 0/1:12:9,3:9:314:3:120:-7.57533,0,-24.9819 dDocent_Contig_13885 13 . G A 162.115 . AB=0.166667;ABP=20.3821;AC=1;AF=0.166667;AN=6;AO=3;CIGAR=1X2M1X;DP=35;DPB=35;DPRA=6;EPP=9.52472;EPPR=55.1256;GTI=0;LEN=1;MEANALT=2;MQM=60;MQMR=60;NS=3;NUMALT=2;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=121;QR=950;RO=24;RPL=0;RPP=9.52472;RPPR=55.1256;RPR=3;RUN=1;SAF=3;SAP=9.52472;SAR=0;SRF=24;SRP=55.1256;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|1:18:12,3,3:12:484:3,3:121,109:-6.38178,0,-39.0251,-1.11397,-31.0361,-40.1073 0|0:3:3,0,0:3:111:0,0:0,0:0,-0.90309,-10.3505,-0.90309,-10.3505,-10.3505 0|0:14:9,0,5:9:355:0,5:0,191:-13.3413,-16.0505,-45.2668,0,-29.6024,-28.0972 dDocent_Contig_13887 70 . T C 623.966 . AB=0.487805;ABP=3.06326;AC=4;AF=0.666667;AN=6;AO=22;CIGAR=1X;DP=43;DPB=43;DPRA=0;EPP=50.7827;EPPR=48.6112;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=858;QR=841;RO=21;RPL=22;RPP=50.7827;RPPR=48.6112;RPR=0;RUN=1;SAF=22;SAP=50.7827;SAR=0;SRF=21;SRP=48.6112;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:28:14,14:14:568:14:567:-42.9438,0,-43.0337 1/1:2:0,2:0:0:2:70:-6.64622,-0.60206,0 0/1:13:7,6:7:273:6:221:-16.329,0,-21.0246 dDocent_Contig_13888 28 . A T 115.723 . AB=0.384615;ABP=4.51363;AC=1;AF=0.166667;AN=6;AO=5;CIGAR=1X;DP=76;DPB=76;DPRA=0.412698;EPP=13.8677;EPPR=157.185;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=185;QR=2790;RO=71;RPL=0;RPP=13.8677;RPPR=157.185;RPR=5;RUN=1;SAF=5;SAP=13.8677;SAR=0;SRF=71;SRP=157.185;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:13:8,5:8:326:5:185:-13.0951,0,-25.7963 0/0:43:43,0:43:1658:0:0:0,-12.9443,-149.451 0/0:20:20,0:20:806:0:0:0,-6.0206,-72.8565 dDocent_Contig_13889 30 . T G 607.611 . AB=0.363636;ABP=13.6703;AC=3;AF=0.5;AN=6;AO=24;CIGAR=1X;DP=66;DPB=66;DPRA=0;EPP=55.1256;EPPR=94.2121;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=945;QR=1638;RO=42;RPL=0;RPP=55.1256;RPPR=94.2121;RPR=24;RUN=1;SAF=24;SAP=55.1256;SAR=0;SRF=42;SRP=94.2121;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:19:13,6:13:508:6:241:-16.3462,0,-40.3404 0/1:26:23,3:23:886:3:120:-3.36053,0,-72.2177 0/1:21:6,15:6:244:15:584:-46.5709,0,-16.0172 dDocent_Contig_13891 108 . A G 1169.77 . AB=0.30102;ABP=70.4146;AC=3;AF=0.5;AN=6;AO=59;CIGAR=1X;DP=196;DPB=196;DPRA=0;EPP=131.127;EPPR=300.502;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=0;PAIREDR=0.408759;PAO=0;PQA=0;PQR=0;PRO=0;QA=2006;QR=4758;RO=137;RPL=0;RPP=131.127;RPPR=300.502;RPR=59;RUN=1;SAF=0;SAP=131.127;SAR=59;SRF=0;SRP=300.502;SRR=137;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:110:83,27:83:2894:27:913:-49.3678,0,-227.584 0/1:34:23,11:23:806:11:379:-24.2071,0,-62.6243 0/1:52:31,21:31:1058:21:714:-48.9249,0,-79.8695 dDocent_Contig_13892 55 . T G 63.5532 . AB=0.142857;ABP=49.5419;AC=2;AF=0.333333;AN=6;AO=6;CIGAR=1X1M1X1M1X;DP=55;DPB=55;DPRA=1.61538;EPP=16.0391;EPPR=105.07;GTI=0;LEN=1;MEANALT=1.5;MQM=60;MQMR=60;NS=3;NUMALT=2;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=231;QR=1847;RO=47;RPL=6;RPP=16.0391;RPPR=105.07;RPR=0;RUN=1;SAF=6;SAP=16.0391;SAR=0;SRF=47;SRP=105.07;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|1:31:28,3,0:28:1122:3,0:110,0:-0.927514,0,-91.9345,-9.35635,-92.8376,-101.824 0|0:13:13,0,0:13:492:0,0:0,0:0,-3.91339,-44.6194,-3.91339,-44.6194,-44.6194 0|1:11:6,3,2:6:233:3,2:121,81:-8.16707,0,-18.2264,-3.29343,-12.4461,-21.8233 dDocent_Contig_13893 26 . G A 377.915 . AB=0.288462;ABP=23.2217;AC=1;AF=0.166667;AN=6;AO=15;CIGAR=1X;DP=64;DPB=64;DPRA=8.66667;EPP=35.5824;EPPR=109.412;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=607;QR=1972;RO=49;RPL=0;RPP=35.5824;RPPR=109.412;RPR=15;RUN=1;SAF=15;SAP=35.5824;SAR=0;SRF=49;SRP=109.412;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:52:37,15:37:1493:15:607:-39.3142,0,-118.958 0/0:3:3,0:3:121:0:0:0,-0.90309,-11.28 0/0:9:9,0:9:358:0:0:0,-2.70927,-32.5816 dDocent_Contig_13895 38 . A G 739.76 . AB=0.25;ABP=9.52472;AC=1;AF=0.166667;AN=6;AO=3;CIGAR=1X3M1X2M;DP=49;DPB=49.1429;DPRA=0;EPP=3.73412;EPPR=44.2683;GTI=0;LEN=1;MEANALT=3;MQM=29.3333;MQMR=60;NS=3;NUMALT=3;ODDS=0;PAIRED=1;PAIREDR=0.947368;PAO=0;PQA=0;PQR=0;PRO=0;QA=88;QR=756;RO=19;RPL=1;RPP=3.73412;RPPR=44.2683;RPR=2;RUN=1;SAF=3;SAP=9.52472;SAR=0;SRF=19;SRP=44.2683;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|0:24:7,0,0,16:7:274:0,0,16:0,0,631:-49.8029,-51.9102,-74.4385,-51.9102,-74.4385,-74.4385,0,-22.5219,-22.5219,-17.7054 1|0:12:1,3,7,1:1:40:3,7,1:88,282,38:-25.8259,-19.9584,-22.3504,-2.81338,0,-4.02268,-23.0087,-20.1394,-2.99691,-26.0063 0|0:13:11,0,0,2:11:442:0,0,2:0,0,82:-3.86629,-7.17762,-43.5947,-7.17762,-43.5947,-43.5947,0,-36.8253,-36.8253,-36.2232 dDocent_Contig_13896 113 . A T 96.3454 . AB=0.275862;ABP=15.6647;AC=3;AF=0.5;AN=6;AO=8;CIGAR=1X;DP=29;DPB=29;DPRA=0;EPP=20.3821;EPPR=48.6112;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=255;QR=710;RO=21;RPL=0;RPP=20.3821;RPPR=48.6112;RPR=8;RUN=1;SAF=0;SAP=20.3821;SAR=8;SRF=0;SRP=48.6112;SRR=21;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:18:14,4:14:470:4:139:-7.43415,0,-37.2028 0/1:4:2,2:2:70:2:63:-4.77971,0,-5.44328 0/1:7:5,2:5:170:2:53:-2.92646,0,-13.5275 dDocent_Contig_13897 113 . T G 234.079 . AB=0.157895;ABP=22.325;AC=1;AF=0.166667;AN=6;AO=3;CIGAR=3M1X4M;DP=41;DPB=42.375;DPRA=2.375;EPP=9.52472;EPPR=57.2971;GTI=0;LEN=1;MEANALT=3;MQM=60;MQMR=60;NS=3;NUMALT=2;ODDS=3.46945e-18;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=103;QR=850;RO=25;RPL=0;RPP=9.52472;RPPR=57.2971;RPR=3;RUN=1;SAF=0;SAP=9.52472;SAR=3;SRF=0;SRP=57.2971;SRR=25;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|1:19:14,1,3:14:472:1,3:33,103:-4.15722,-5.70545,-43.6543,0,-35.5906,-37.3552 0|0:8:0,6,0:0:0:6,0:199,0:-17.9361,-1.80618,0,-17.9361,-1.80618,-17.9361 0|0:14:11,3,0:11:378:3,0:97,0:-4.83615,0,-30.137,-8.14748,-31.0401,-38.86 dDocent_Contig_13898 119 . T G 2090.08 . AB=0.853448;ABP=128.881;AC=4;AF=0.666667;AN=6;AO=164;CIGAR=1X;DP=190;DPB=190;DPRA=0;EPP=333.551;EPPR=48.6112;GTI=0;LEN=1;MEANALT=1.66667;MQM=18.3293;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=0;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=5638;QR=731;RO=21;RPL=0;RPP=359.132;RPPR=48.6112;RPR=164;RUN=1;SAF=3;SAP=333.551;SAR=161;SRF=0;SRP=48.6112;SRR=21;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 1/1:74:6,65:6:210:65:2248:-84.0325,-2.41352,0 0/1:48:6,42:6:210:42:1435:-51.4561,0,-4.79302 0/1:68:9,57:9:311:57:1955:-77.0422,0,-8.21579 dDocent_Contig_13899 17 . C T 771.704 . AB=0.142857;ABP=103.829;AC=1;AF=0.166667;AN=6;AO=13;CIGAR=1X2M1X;DP=93;DPB=93;DPRA=0;EPP=31.2394;EPPR=113.755;GTI=0;LEN=1;MEANALT=2.5;MQM=37.7692;MQMR=60;NS=3;NUMALT=2;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=528;QR=2007;RO=51;RPL=0;RPP=31.2394;RPPR=113.755;RPR=13;RUN=1;SAF=13;SAP=31.2394;SAR=0;SRF=51;SRP=113.755;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|0:48:23,4,20:23:901:4,20:163,811:-60.149,-63.191,-136.064,0,-70.3789,-68.2461 0|0:2:1,0,1:1:41:0,1:0,41:-3.49251,-3.79354,-7.17762,0,-3.79354,-3.49251 0|1:43:27,9,7:27:1065:9,7:365,287:-19.0424,0,-84.8983,-3.46404,-63.9158,-88.9953 dDocent_Contig_13900 17 . C T 201.481 . AB=0.0714286;ABP=92.3509;AC=0;AF=0;AN=6;AO=8;CIGAR=2X1M1X4M;DP=170;DPB=170;DPRA=0;EPP=20.3821;EPPR=272.273;GTI=0;LEN=1;MEANALT=5.5;MQM=60;MQMR=60;NS=3;NUMALT=4;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=323;QR=4897;RO=124;RPL=0;RPP=20.3821;RPPR=272.273;RPR=8;RUN=1;SAF=8;SAP=20.3821;SAR=0;SRF=124;SRP=272.273;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|0:105:85,3,0,4,4:85:3365:3,0,4,4:121,0,164,154:0,-15.6196,-291.688,-25.5875,-292.591,-302.553,-12.0407,-279.054,-289.016,-287.812,-12.9425,-279.95,-289.913,-276.375,-288.708 0|0:9:1,0,6,0,2:1:40:0,6,0,2:0,238,0,81:-9.18271,-9.48374,-12.7995,-3.38902,-6.68246,-4.87628,-9.48374,-12.7995,-6.68246,-12.7995,-2.74091,-6.07166,0,-6.07166,-5.4696 0|0:56:38,5,0,4,8:38:1492:5,0,4,8:199,0,159,315:-14.4877,-10.862,-132.075,-25.9268,-133.581,-148.646,-12.8293,-120.489,-135.554,-134.35,0,-107.668,-122.733,-109.641,-120.325 dDocent_Contig_13901 128 . G A 36.0015 . AB=0.184211;ABP=35.9253;AC=1;AF=0.166667;AN=6;AO=13;CIGAR=1X;DP=153;DPB=153;DPRA=2.23214;EPP=31.2394;EPPR=307.016;GTI=0;LEN=1;MEANALT=1;MQM=28;MQMR=41.2143;NS=3;NUMALT=1;ODDS=0;PAIRED=0;PAIREDR=0.257143;PAO=0;PQA=0;PQR=0;PRO=0;QA=419;QR=4615;RO=140;RPL=0;RPP=31.2394;RPPR=307.016;RPR=13;RUN=1;SAF=0;SAP=31.2394;SAR=13;SRF=0;SRP=307.016;SRR=140;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:87:81,6:81:2633:6:191:0,-11.916,-175.447 0/0:28:28,0:28:907:0:0:0,-8.42884,-74.2574 0/1:38:31,7:31:1075:7:228:-5.42395,0,-77.8985 dDocent_Contig_13902 13 . T C 569.256 . AB=0.555556;ABP=3.9754;AC=2;AF=0.333333;AN=6;AO=20;CIGAR=1X;DP=44;DPB=44;DPRA=2.25;EPP=46.4397;EPPR=55.1256;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=784;QR=943;RO=24;RPL=0;RPP=46.4397;RPPR=55.1256;RPR=20;RUN=1;SAF=20;SAP=46.4397;SAR=0;SRF=24;SRP=55.1256;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:23:14,9:14:557:9:362:-26.0207,0,-43.5482 0/0:8:8,0:8:314:0:0:0,-2.40824,-28.6237 0/1:13:2,11:2:72:11:422:-34.4108,0,-2.92093 dDocent_Contig_13903 71 . C A 150.012 . AB=0.210526;ABP=16.8392;AC=3;AF=0.5;AN=6;AO=4;CIGAR=6M1X1M1I1M1X2M;DP=39;DPB=39.6667;DPRA=0;EPP=11.6962;EPPR=55.1256;GTI=0;LEN=1;MEANALT=2;MQM=60;MQMR=60;NS=3;NUMALT=3;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=154;QR=921;RO=24;RPL=4;RPP=11.6962;RPPR=55.1256;RPR=0;RUN=1;SAF=4;SAP=11.6962;SAR=0;SRF=24;SRP=55.1256;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|1:16:11,3,0,2:11:424:3,0,2:104,0,68:-5.14318,0,-33.9522,-8.45451,-34.8553,-43.2999,-2.94164,-29.3468,-37.789,-37.187 0|1:4:3,1,0,0:3:114:1,0,0:39,0,0:-2.69244,0,-9.4281,-3.59553,-9.72913,-12.9375,-3.59553,-9.72913,-12.9375,-12.9375 0|1:19:10,5,4,0:10:383:5,4,0:191,154,0:-12.6596,0,-29.9256,-3.0238,-18.7854,-33.2525,-15.6699,-31.4307,-34.4566,-47.1019 dDocent_Contig_13904 10 . A G 41.5074 . AB=0.333333;ABP=4.45795;AC=1;AF=0.166667;AN=6;AO=3;CIGAR=1X;DP=26;DPB=26;DPRA=1.66667;EPP=9.52472;EPPR=52.9542;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=123;QR=921;RO=23;RPL=0;RPP=9.52472;RPPR=52.9542;RPR=3;RUN=1;SAF=3;SAP=9.52472;SAR=0;SRF=23;SRP=52.9542;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:6:6,0:6:241:0:0:0,-1.80618,-22.0663 0/1:6:4,2:4:162:2:82:-5.9735,0,-13.1608 0/0:14:13,1:13:518:1:41:0,-0.119853,-42.8696 dDocent_Contig_13905 9 . T A 111.634 . AB=0.194444;ABP=32.2045;AC=2;AF=0.333333;AN=6;AO=7;CIGAR=1X;DP=49;DPB=49;DPRA=1.38462;EPP=18.2106;EPPR=94.2121;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=0.97619;PAO=0;PQA=0;PQR=0;PRO=0;QA=269;QR=1617;RO=42;RPL=0;RPP=18.2106;RPPR=94.2121;RPR=7;RUN=1;SAF=7;SAP=18.2106;SAR=0;SRF=42;SRP=94.2121;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:31:28,3:28:1074:3:113:-1.20704,0,-87.6344 0/1:5:1,4:1:39:4:156:-12.9121,0,-2.39141 0/0:13:13,0:13:504:0:0:0,-3.91339,-45.7089 dDocent_Contig_13906 10 . A T 166.529 . AB=0.296296;ABP=12.7417;AC=3;AF=0.5;AN=6;AO=8;CIGAR=1X;DP=27;DPB=27;DPRA=0;EPP=20.3821;EPPR=44.2683;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=0.375;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=312;QR=765;RO=19;RPL=0;RPP=20.3821;RPPR=44.2683;RPR=8;RUN=1;SAF=8;SAP=20.3821;SAR=0;SRF=19;SRP=44.2683;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:5:1,4:1:40:4:151:-12.4513,0,-2.49053 0/1:12:9,3:9:363:3:121:-7.66763,0,-29.4219 0/1:10:9,1:9:362:1:40:-0.985379,0,-29.9333 dDocent_Contig_13907 24 . T A 2876.91 . AB=0.497462;ABP=3.02132;AC=3;AF=0.5;AN=6;AO=98;CIGAR=1X;DP=197;DPB=197;DPRA=0;EPP=215.815;EPPR=217.986;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=3908;QR=3931;RO=99;RPL=0;RPP=215.815;RPPR=217.986;RPR=98;RUN=1;SAF=98;SAP=215.815;SAR=0;SRF=99;SRP=217.986;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:111:65,46:65:2581:46:1845:-132.845,0,-199 0/1:19:8,11:8:322:11:443:-34.5063,0,-23.6286 0/1:67:26,41:26:1028:41:1620:-125.863,0,-72.6446 dDocent_Contig_13908 126 . G A 60.2354 . AB=0.133333;ABP=20.5268;AC=3;AF=0.5;AN=6;AO=4;CIGAR=1X1M1X;DP=23;DPB=23;DPRA=1.41667;EPP=11.6962;EPPR=44.2683;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=126;QR=751;RO=19;RPL=0;RPP=11.6962;RPPR=44.2683;RPR=4;RUN=1;SAF=0;SAP=11.6962;SAR=4;SRF=0;SRP=44.2683;SRR=19;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|1:15:13,2:13:516:2:70:-2.13195,0,-42.2716 0|0:6:6,0:6:235:0:0:0,-1.80618,-21.5182 1|1:2:0,2:0:0:2:56:-5.31865,-0.60206,0 dDocent_Contig_13909 30 . T C 93.8292 . AB=0.117647;ABP=46.1843;AC=4;AF=0.666667;AN=6;AO=6;CIGAR=1X;DP=36;DPB=36;DPRA=0;EPP=16.0391;EPPR=65.983;GTI=0;LEN=1;MEANALT=1.33333;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=237;QR=1063;RO=29;RPL=0;RPP=16.0391;RPPR=65.983;RPR=6;RUN=1;SAF=6;SAP=16.0391;SAR=0;SRF=29;SRP=65.983;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:20:17,2:17:613:2:78:-1.28088,0,-49.3667 1/1:2:0,2:0:0:2:78:-7.40278,-0.60206,0 0/1:14:12,2:12:450:2:81:-3.47131,0,-36.6321 dDocent_Contig_13910 43 . A G 51.0042 . AB=0.117647;ABP=67.7713;AC=1;AF=0.166667;AN=6;AO=6;CIGAR=1M11D1M2X1M1X;DP=74;DPB=70.1176;DPRA=4.43478;EPP=16.0391;EPPR=150.67;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=240;QR=2657;RO=68;RPL=0;RPP=16.0391;RPPR=150.67;RPR=6;RUN=1;SAF=6;SAP=16.0391;SAR=0;SRF=68;SRP=150.67;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|1:51:45,6:45:1769:6:240:-6.62329,0,-144.096 0|0:9:9,0:9:334:0:0:0,-2.70927,-30.4072 0|0:14:14,0:14:554:0:0:0,-4.21442,-50.205 dDocent_Contig_13911 12 . G A 1648.55 . AB=0.571429;ABP=7.04303;AC=4;AF=0.666667;AN=6;AO=52;CIGAR=1X5M1X;DP=91;DPB=91;DPRA=0;EPP=115.927;EPPR=70.3259;GTI=0;LEN=1;MEANALT=2.33333;MQM=60;MQMR=60;NS=3;NUMALT=2;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=2061;QR=1242;RO=31;RPL=0;RPP=115.927;RPPR=70.3259;RPR=52;RUN=1;SAF=52;SAP=115.927;SAR=0;SRF=31;SRP=70.3259;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|1:45:18,1,25:18:724:1,25:40,985:-75.5964,-77.7196,-137.088,0,-56.3734,-52.1426 0|1:16:12,2,2:12:478:2,2:80,81:-3.06927,-0.0939437,-38.8473,0,-32.7693,-38.7576 1|1:30:1,4,25:1:40:4,25:161,995:-91.5994,-78.6305,-80.7215,-9.97671,0,-5.74555 dDocent_Contig_13912 9 . T A 521.266 . AB=0.0645161;ABP=54.0749;AC=3;AF=0.5;AN=6;AO=2;CIGAR=3M2X3M1X;DP=129;DPB=140.556;DPRA=0;EPP=7.35324;EPPR=198.443;GTI=0;LEN=1;MEANALT=3;MQM=60;MQMR=60;NS=3;NUMALT=3;ODDS=0;PAIRED=0;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=75;QR=3498;RO=90;RPL=0;RPP=7.35324;RPPR=198.443;RPR=2;RUN=1;SAF=2;SAP=7.35324;SAR=0;SRF=90;SRP=198.443;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|1:72:53,14,2,0:53:2054:14,2,0:554,78,0:-29.7515,0,-164.655,-39.2904,-162.457,-207.455,-45.7061,-168.869,-208.057,-214.469 0|1:31:22,4,3,2:22:862:4,3,2:159,115,75:-6.47618,0,-69.6903,-3.66227,-61.4565,-73.6455,-6.95894,-64.7521,-68.4063,-77.2421 0|1:26:15,8,1,0:15:582:8,1,0:315,39,0:-21.4218,0,-45.4304,-22.7309,-44.6324,-70.2492,-25.9372,-47.8387,-70.5502,-73.7562 dDocent_Contig_13913 47 . T C 320.862 . AB=0.428571;ABP=4.25114;AC=2;AF=0.333333;AN=6;AO=12;CIGAR=2X;DP=37;DPB=37;DPRA=1.55556;EPP=29.068;EPPR=57.2971;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=477;QR=867;RO=25;RPL=12;RPP=29.068;RPPR=57.2971;RPR=0;RUN=1;SAF=12;SAP=29.068;SAR=0;SRF=25;SRP=57.2971;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|1:21:10,11:10:348:11:439:-33.5434,0,-25.332 0|1:7:6,1:6:204:1:38:-1.69006,0,-16.5829 0|0:9:9,0:9:315:0:0:0,-2.70927,-28.6864 dDocent_Contig_13915 52 . A C 97.4085 . AB=0.193548;ABP=28.2974;AC=1;AF=0.166667;AN=6;AO=6;CIGAR=6M1X2M;DP=34;DPB=32.4444;DPRA=5.16667;EPP=16.0391;EPPR=57.2971;GTI=0;LEN=1;MEANALT=2;MQM=48;MQMR=60;NS=3;NUMALT=2;ODDS=0;PAIRED=0.333333;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=244;QR=979;RO=25;RPL=6;RPP=16.0391;RPPR=57.2971;RPR=0;RUN=1;SAF=6;SAP=16.0391;SAR=0;SRF=25;SRP=57.2971;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|0:17:12,2,2:12:470:2,2:77,81:-2.70885,0,-38.0469,-0.0561359,-32.382,-38.1014 0|0:3:3,0,0:3:112:0,0:0,0:0,-0.90309,-10.4446,-0.90309,-10.4446,-10.4446 0|1:14:10,0,4:10:397:0,4:0,163:-10.4217,-13.432,-46.1157,0,-33.0796,-31.8755 dDocent_Contig_13916 27 . C T 248.811 . AB=0.27907;ABP=21.2406;AC=3;AF=0.5;AN=6;AO=12;CIGAR=1X;DP=43;DPB=43;DPRA=0;EPP=29.068;EPPR=70.3259;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=0.916667;PAIREDR=0.967742;PAO=0;PQA=0;PQR=0;PRO=0;QA=469;QR=1240;RO=31;RPL=0;RPP=29.068;RPPR=70.3259;RPR=12;RUN=1;SAF=12;SAP=29.068;SAR=0;SRF=31;SRP=70.3259;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:12:10,2:10:392:2:78:-3.79042,0,-32.0205 0/1:17:9,8:9:363:8:315:-23.5973,0,-27.9157 0/1:14:12,2:12:485:2:76:-2.99984,0,-39.7859 dDocent_Contig_13919 18 . T G 184.322 . AB=0.243902;ABP=26.3669;AC=2;AF=0.333333;AN=6;AO=10;CIGAR=1X2M1X;DP=92;DPB=92;DPRA=0.401961;EPP=24.725;EPPR=178.9;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=373;QR=3205;RO=81;RPL=0;RPP=24.725;RPPR=178.9;RPR=10;RUN=1;SAF=10;SAP=24.725;SAR=0;SRF=81;SRP=178.9;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|0:51:50,0:50:1965:0:0:0,-15.0515,-176.654 0|1:9:3,6:3:119:6:217:-17.1707,0,-8.38612 0|1:32:28,4:28:1121:4:156:-4.78416,0,-91.543 dDocent_Contig_13920 181 . G A 558.672 . AB=0.612903;ABP=6.44263;AC=2;AF=0.333333;AN=6;AO=20;CIGAR=1X;DP=45;DPB=45;DPRA=0;EPP=46.4397;EPPR=57.2971;GTI=0;LEN=1;MEANALT=1;MQM=58.45;MQMR=59.28;NS=3;NUMALT=1;ODDS=0;PAIRED=0.95;PAIREDR=0.96;PAO=0;PQA=0;PQR=0;PRO=0;QA=809;QR=1003;RO=25;RPL=20;RPP=46.4397;RPPR=57.2971;RPR=0;RUN=1;SAF=0;SAP=46.4397;SAR=20;SRF=0;SRP=57.2971;SRR=25;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:26:9,17:9:366:17:691:-53.5859,0,-25.4784 0/1:5:3,2:3:122:2:77:-5.80305,0,-9.86734 0/0:14:13,1:13:515:1:41:0,-0.119853,-42.3733 dDocent_Contig_13921 8 . C A 81.8793 . AB=0.238095;ABP=15.5221;AC=2;AF=0.333333;AN=6;AO=5;CIGAR=1X;DP=46;DPB=46;DPRA=0.42;EPP=13.8677;EPPR=92.0407;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=192;QR=1585;RO=41;RPL=0;RPP=13.8677;RPPR=92.0407;RPR=5;RUN=1;SAF=5;SAP=13.8677;SAR=0;SRF=41;SRP=92.0407;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:25:25,0:25:967:0:0:0,-7.52575,-87.3433 0/1:4:2,2:2:76:2:76:-6.01055,0,-6.01055 0/1:17:14,3:14:542:3:116:-5.70019,0,-44.0079 dDocent_Contig_13922 31 . C A 516.587 . AB=0.431818;ABP=4.78696;AC=3;AF=0.5;AN=6;AO=19;CIGAR=1X;DP=44;DPB=44;DPRA=0;EPP=44.2683;EPPR=55.1256;GTI=0;LEN=1;MEANALT=1.33333;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=3.46945e-18;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=771;QR=969;RO=24;RPL=0;RPP=44.2683;RPPR=55.1256;RPR=19;RUN=1;SAF=19;SAP=44.2683;SAR=0;SRF=24;SRP=55.1256;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:12:9,3:9:366:3:122:-7.76013,0,-29.6922 0/1:3:1,2:1:39:2:81:-6.78264,0,-2.99347 0/1:29:14,14:14:564:14:568:-42.6243,0,-42.2644 dDocent_Contig_13924 10 . A T 257.844 . AB=0.354839;ABP=8.68415;AC=3;AF=0.5;AN=6;AO=11;CIGAR=1X2M1X2M1X3M;DP=31;DPB=31;DPRA=0;EPP=26.8965;EPPR=39.9253;GTI=0;LEN=1;MEANALT=1.66667;MQM=60;MQMR=60;NS=3;NUMALT=2;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=432;QR=665;RO=17;RPL=0;RPP=26.8965;RPPR=39.9253;RPR=11;RUN=1;SAF=11;SAP=26.8965;SAR=0;SRF=17;SRP=39.9253;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|1:12:10,0,2:10:388:0,2:0,78:-3.79094,-6.80124,-38.6789,0,-32.267,-31.665 0|1:8:2,2,3:2:79:2,3:78,120:-9.29145,-3.48275,-9.38248,0,-0.0926758,-5.6025 0|1:11:5,0,6:5:198:0,6:0,234:-18.1194,-19.6246,-35.9243,0,-16.6926,-14.8864 dDocent_Contig_13928 32 . G A 231.426 . AB=0.310345;ABP=12.0706;AC=1;AF=0.166667;AN=6;AO=9;CIGAR=1X;DP=41;DPB=41;DPRA=4.83333;EPP=22.5536;EPPR=72.4974;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=1.73472e-18;PAIRED=0.777778;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=367;QR=1257;RO=32;RPL=0;RPP=22.5536;RPPR=72.4974;RPR=9;RUN=1;SAF=9;SAP=22.5536;SAR=0;SRF=32;SRP=72.4974;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:29:20,9:20:799:9:367:-24.6654,0,-63.4967 0/0:7:7,0:7:279:0:0:0,-2.10721,-25.48 0/0:5:5,0:5:179:0:0:0,-1.50515,-16.4577 dDocent_Contig_13929 73 . C A 925.129 . AB=0.423529;ABP=7.3277;AC=3;AF=0.5;AN=6;AO=36;CIGAR=1X;DP=85;DPB=85;DPRA=0;EPP=81.1833;EPPR=109.412;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=6.93889e-18;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=1362;QR=1843;RO=49;RPL=36;RPP=81.1833;RPPR=109.412;RPR=0;RUN=1;SAF=36;SAP=81.1833;SAR=0;SRF=49;SRP=109.412;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:52:29,23:29:1095:23:879:-63.7769,0,-83.1951 0/1:12:9,3:9:349:3:117:-7.29755,0,-28.157 0/1:21:11,10:11:399:10:366:-26.9614,0,-29.9307 dDocent_Contig_13930 12 . C T 68.8603 . AB=0.375;ABP=4.09604;AC=1;AF=0.166667;AN=6;AO=3;CIGAR=1X2M1I11M;DP=17;DPB=17.2143;DPRA=1.77778;EPP=9.52472;EPPR=33.4109;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=0;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=116;QR=541;RO=14;RPL=0;RPP=9.52472;RPPR=33.4109;RPR=3;RUN=1;SAF=3;SAP=9.52472;SAR=0;SRF=14;SRP=33.4109;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|1:8:5,3:5:190:3:116:-8.40854,0,-15.0582 0|0:7:7,0:7:273:0:0:0,-2.10721,-24.937 0|0:2:2,0:2:78:0:0:0,-0.60206,-7.4033 dDocent_Contig_13931 9 . T C 118.11 . AB=0.169492;ABP=58.9901;AC=2;AF=0.333333;AN=6;AO=11;CIGAR=5X;DP=87;DPB=87;DPRA=0;EPP=26.8965;EPPR=143.013;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=3.46945e-18;PAIRED=0;PAIREDR=0.736842;PAO=0;PQA=0;PQR=0;PRO=0;QA=393;QR=2902;RO=76;RPL=0;RPP=26.8965;RPPR=168.042;RPR=11;RUN=1;SAF=11;SAP=26.8965;SAR=0;SRF=73;SRP=143.013;SRR=3;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|1:36:32,4:32:1215:4:133:-1.45652,0,-98.8046 0|0:28:27,1:27:1037:1:36:0,-4.83056,-90.039 0|1:23:17,6:17:650:6:224:-13.5953,0,-51.9122 dDocent_Contig_13932 9 . T G 267.511 . AB=0.07;ABP=163.612;AC=2;AF=0.333333;AN=6;AO=7;CIGAR=1X1M2X6M;DP=100;DPB=99.6;DPRA=0;EPP=18.2106;EPPR=128.956;GTI=0;LEN=1;MEANALT=4.33333;MQM=47;MQMR=60;NS=3;NUMALT=5;ODDS=0;PAIRED=1;PAIREDR=0.87931;PAO=0;PQA=0;PQR=0;PRO=0;QA=274;QR=2281;RO=58;RPL=0;RPP=18.2106;RPPR=128.956;RPR=7;RUN=1;SAF=7;SAP=18.2106;SAR=0;SRF=58;SRP=128.956;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|1:29:19,4,3,0,3,0:19:750:4,3,0,3,0:160,115,0,119,0:-7.38491,0,-60.5139,-3.82959,-52.4393,-64.6368,-13.1045,-61.718,-65.5399,-74.8189,-3.30654,-51.9218,-55.7441,-65.0228,-64.1198,-13.1045,-61.718,-65.5399,-74.8189,-65.0228,-74.8189 0|1:22:13,5,1,0,1,2:13:507:5,1,0,1,2:173,40,0,41,82:-10.0706,0,-40.1555,-10.7535,-38.4328,-52.1377,-13.984,-41.6606,-52.4387,-55.667,-10.5952,-38.2755,-49.0532,-52.2817,-51.9806,-7.20502,-34.8903,-45.6676,-48.8962,-45.5105,-48.2941 0|0:49:26,0,3,4,7,7:26:1024:0,3,4,7,7:0,119,153,275,184:-14.8184,-22.6451,-106.923,-13.0283,-97.3135,-96.4104,-10.0815,-94.369,-84.7597,-93.1649,0,-84.3016,-74.6918,-71.7471,-82.1944,-9.58442,-93.8451,-84.2373,-81.2933,-71.2271,-91.7379 dDocent_Contig_13934 1 . N A 104.064 . AB=0;ABP=0;AC=4;AF=1;AN=4;AO=3;CIGAR=1X1M12I2M;DP=4;DPB=16;DPRA=0;EPP=9.52472;EPPR=0;GTI=0;LEN=1;MEANALT=1.5;MQM=53.3333;MQMR=0;NS=2;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=109;QR=0;RO=0;RPL=0;RPP=9.52472;RPPR=0;RPR=3;RUN=1;SAF=3;SAP=9.52472;SAR=0;SRF=0;SRP=0;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 1|1:1:0,1:0:0:1:32:-3.13615,-0.30103,0 1|1:3:0,2:0:0:2:77:-6.9674,-0.60206,0 .:.:.:.:.:.:.:. dDocent_Contig_13935 11 . C T 220.829 . AB=0.147826;ABP=126.898;AC=3;AF=0.5;AN=6;AO=17;CIGAR=1X;DP=115;DPB=115;DPRA=0;EPP=39.9253;EPPR=215.815;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=679;QR=3945;RO=98;RPL=0;RPP=39.9253;RPPR=215.815;RPR=17;RUN=1;SAF=17;SAP=39.9253;SAR=0;SRF=98;SRP=215.815;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:73:63,10:63:2541:10:404:-14.7449,0,-206.836 0/1:15:12,3:12:490:3:114:-6.11377,0,-39.9357 0/1:27:23,4:23:914:4:161:-6.74709,0,-74.4349 dDocent_Contig_13936 157 . T C 67.6823 . AB=0.2;ABP=10.8276;AC=3;AF=0.5;AN=6;AO=4;CIGAR=1X;DP=27;DPB=27;DPRA=0;EPP=11.6962;EPPR=52.9542;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=0;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=157;QR=849;RO=23;RPL=0;RPP=11.6962;RPPR=52.9542;RPR=4;RUN=1;SAF=0;SAP=11.6962;SAR=4;SRF=0;SRP=52.9542;SRR=23;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:16:15,1:15:548:1:40:0,-0.820801,-45.6445 1/1:1:0,1:0:0:1:39:-3.89656,-0.30103,0 0/1:10:8,2:8:301:2:78:-4.393,0,-24.4359 dDocent_Contig_13937 37 . C G 193.519 . AB=0.538462;ABP=3.17734;AC=1;AF=0.166667;AN=6;AO=7;CIGAR=1X;DP=23;DPB=23;DPRA=2.6;EPP=18.2106;EPPR=35.5824;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=270;QR=608;RO=15;RPL=0;RPP=18.2106;RPPR=35.5824;RPR=7;RUN=1;SAF=7;SAP=18.2106;SAR=0;SRF=15;SRP=35.5824;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:9:9,0:9:363:0:0:0,-2.70927,-33.0341 0/0:1:0,0:0:0:0:0:0,0,0 0/1:13:6,7:6:245:7:270:-20.7487,0,-18.5161 dDocent_Contig_13938 56 . C G 30.3135 . AB=0.666667;ABP=3.73412;AC=1;AF=0.166667;AN=6;AO=2;CIGAR=3X;DP=26;DPB=26;DPRA=0.26087;EPP=7.35324;EPPR=55.1256;GTI=0;LEN=1;MEANALT=1;MQM=31;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=0;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=77;QR=959;RO=24;RPL=0;RPP=7.35324;RPPR=55.1256;RPR=2;RUN=1;SAF=0;SAP=7.35324;SAR=2;SRF=24;SRP=55.1256;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|0:8:8,0:8:312:0:0:0,-2.40824,-28.4379 0|1:3:1,2:1:41:2:77:-4.84563,0,-3.19148 0|0:15:15,0:15:606:0:0:0,-4.51545,-54.879 dDocent_Contig_13939 34 . A T 50.8795 . AB=0.666667;ABP=3.73412;AC=1;AF=0.166667;AN=6;AO=3;CIGAR=1X;DP=65;DPB=65;DPRA=1.30556;EPP=9.52472;EPPR=137.642;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=58.3387;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=123;QR=2421;RO=62;RPL=0;RPP=9.52472;RPPR=137.642;RPR=3;RUN=1;SAF=3;SAP=9.52472;SAR=0;SRF=62;SRP=137.642;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:44:43,1:43:1683:1:41:0,-9.15075,-147.38 0/1:3:1,2:1:35:2:82:-6.87659,0,-2.59554 0/0:18:18,0:18:703:0:0:0,-5.41854,-63.513 dDocent_Contig_13940 72 . A T 46.3805 . AB=0.230769;ABP=11.1951;AC=1;AF=0.166667;AN=6;AO=3;CIGAR=1X;DP=30;DPB=30;DPRA=1.52941;EPP=9.52472;EPPR=61.6401;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=108;QR=965;RO=27;RPL=3;RPP=9.52472;RPPR=61.6401;RPR=0;RUN=1;SAF=3;SAP=9.52472;SAR=0;SRF=27;SRP=61.6401;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:13:10,3:10:363:3:108:-6.16074,0,-29.0998 0/0:14:14,0:14:497:0:0:0,-4.21442,-45.0608 0/0:3:3,0:3:105:0:0:0,-0.90309,-9.795 dDocent_Contig_13941 15 . G A 2097.32 . AB=0.0865385;ABP=157.435;AC=2;AF=0.333334;AN=6;AO=9;CIGAR=1X5M1X3M;DP=139;DPB=140.8;DPRA=0;EPP=22.5536;EPPR=29.068;GTI=0;LEN=1;MEANALT=8;MQM=60;MQMR=60;NS=3;NUMALT=7;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=346;QR=467;RO=12;RPL=0;RPP=22.5536;RPPR=29.068;RPR=9;RUN=1;SAF=9;SAP=22.5536;SAR=0;SRF=12;SRP=29.068;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 1|0:72:6,1,26,7,18,4,3,5:6:233:1,26,7,18,4,3,5:40,979,266,680,153,115,191:-115.004,-113.515,-132.36,-36.5896,-52.4412,-47.91,-94.9972,-110.849,-33.9241,-112.037,-61.072,-76.9236,0,-58.4063,-74.8006,-104.254,-120.106,-43.1811,-101.588,-67.6634,-122.197,-107.371,-123.223,-46.2979,-104.705,-70.7803,-113.962,-125.615,-101.139,-116.99,-40.0658,-98.4731,-64.5481,-107.73,-110.847,-118.781 0|0:35:6,0,3,0,6,4,4,12:6:234:0,3,0,6,4,4,12:0,102,0,221,155,157,462:-36.1312,-37.9374,-57.1745,-29.6695,-48.906,-48.0029,-37.9374,-57.1745,-48.906,-57.1745,-19.8682,-39.1051,-30.8378,-39.1051,-37.299,-25.202,-44.4396,-36.1715,-44.4396,-26.3704,-43.2355,-25.0229,-44.2607,-35.9925,-44.2607,-26.1913,-31.5254,-43.0566,0,-19.2394,-10.9727,-19.2394,-1.17088,-6.50337,-6.32405,-15.627 1|0:32:0,3,3,2,18,0,2,3:0:0:3,3,2,18,0,2,3:118,110,80,664,0,79,116:-64.0027,-54.2943,-53.3912,-55.0128,-45.3043,-54.1097,-57.411,-47.7023,-48.421,-56.8089,-9.70855,0,-0.72302,-3.11614,-4.29001,-64.0027,-54.2943,-55.0128,-57.411,-9.70855,-64.0027,-57.5005,-47.7918,-48.5106,-50.9086,-3.20617,-57.5005,-56.8984,-54.4734,-44.7647,-45.4835,-47.8814,-0.180209,-54.4734,-47.971,-53.5703 dDocent_Contig_13942 17 . C T 31.5362 . AB=0.2;ABP=10.8276;AC=1;AF=0.166667;AN=6;AO=2;CIGAR=1X;DP=17;DPB=17;DPRA=2.85714;EPP=7.35324;EPPR=35.5824;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=0;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=81;QR=589;RO=15;RPL=0;RPP=7.35324;RPPR=35.5824;RPR=2;RUN=1;SAF=2;SAP=7.35324;SAR=0;SRF=15;SRP=35.5824;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:10:8,2:8:310:2:81:-4.67543,0,-25.2464 0/0:6:6,0:6:239:0:0:0,-1.80618,-21.8848 0/0:1:1,0:1:40:0:0:0,-0.30103,-3.99568 dDocent_Contig_13944 20 . T A 38.6325 . AB=0.4;ABP=3.87889;AC=0;AF=0;AN=6;AO=9;CIGAR=1X3M1I9M;DP=38;DPB=38.8462;DPRA=0;EPP=22.5536;EPPR=59.4686;GTI=0;LEN=1;MEANALT=1.66667;MQM=16;MQMR=60;NS=3;NUMALT=2;ODDS=0;PAIRED=0;PAIREDR=0.961538;PAO=0;PQA=0;PQR=0;PRO=0;QA=144;QR=1005;RO=26;RPL=0;RPP=22.5536;RPPR=59.4686;RPR=9;RUN=1;SAF=9;SAP=22.5536;SAR=0;SRF=26;SRP=59.4686;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|0:19:16,3,0:16:621:3,0:48,0:0,-2.06708,-52.5738,-4.81648,-53.4769,-56.0552 0|0:9:7,2,0:7:272:2,0:32,0:0,-0.230798,-22.3681,-2.10721,-22.9702,-24.6589 0|0:10:3,4,2:3:112:4,2:64,81:-5.68615,-3.25168,-11.2023,0,-5.87246,-8.63649 dDocent_Contig_13945 33 . T A 923.91 . AB=0.294574;ABP=50.2945;AC=3;AF=0.5;AN=6;AO=38;CIGAR=1X1M;DP=129;DPB=129;DPRA=0;EPP=85.5263;EPPR=185.414;GTI=0;LEN=1;MEANALT=2;MQM=58.7895;MQMR=60;NS=3;NUMALT=2;ODDS=0;PAIRED=0.684211;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=1499;QR=3312;RO=84;RPL=0;RPP=85.5263;RPPR=185.414;RPR=38;RUN=1;SAF=38;SAP=85.5263;SAR=0;SRF=84;SRP=185.414;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|1:78:55,5,18:55:2187:5,18:204,698:-40.7413,-40.5272,-219.089,0,-163.284,-174.633 0|1:15:4,1,10:4:163:1,10:35,406:-32.2102,-30.5716,-43.7187,0,-10.6567,-10.4827 0|1:36:25,1,10:25:962:1,10:41,395:-24.9623,-29.1026,-107.756,0,-75.5529,-75.9276 dDocent_Contig_13946 14 . C A 560.933 . AB=0.215385;ABP=94.4794;AC=3;AF=0.5;AN=6;AO=28;CIGAR=1X;DP=130;DPB=130;DPRA=0;EPP=63.8115;EPPR=160.463;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=0.911765;PAO=0;PQA=0;PQR=0;PRO=0;QA=1107;QR=3982;RO=102;RPL=0;RPP=63.8115;RPPR=224.5;RPR=28;RUN=1;SAF=28;SAP=63.8115;SAR=0;SRF=94;SRP=160.463;SRR=8;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:28:15,13:15:602:13:515:-38.2685,0,-46.0899 0/1:63:57,6:57:2224:6:235:-2.55653,0,-181.384 0/1:39:30,9:30:1156:9:357:-20.7527,0,-92.5912 dDocent_Contig_13947 8 . C T 620.532 . AB=0.28125;ABP=42.9111;AC=2;AF=0.333333;AN=6;AO=27;CIGAR=1X;DP=120;DPB=120;DPRA=2;EPP=61.6401;EPPR=204.957;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=0.935484;PAO=0;PQA=0;PQR=0;PRO=0;QA=1042;QR=3574;RO=93;RPL=0;RPP=61.6401;RPPR=204.957;RPR=27;RUN=1;SAF=27;SAP=61.6401;SAR=0;SRF=93;SRP=204.957;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:55:33,22:33:1276:22:848:-60.0854,0,-98.5737 0/0:24:24,0:24:912:0:0:0,-7.22472,-82.3965 0/1:41:36,5:36:1386:5:194:-5.49061,0,-112.681 dDocent_Contig_13948 92 . G A 192.395 . AB=0.322581;ABP=11.486;AC=2;AF=0.333333;AN=6;AO=11;CIGAR=1X;DP=76;DPB=76;DPRA=0;EPP=26.8965;EPPR=144.156;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=0.984615;PAO=0;PQA=0;PQR=0;PRO=0;QA=384;QR=2226;RO=65;RPL=11;RPP=26.8965;RPPR=144.156;RPR=0;RUN=1;SAF=11;SAP=26.8965;SAR=0;SRF=65;SRP=144.156;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:45:44,1:44:1513:1:35:0,-10.0477,-132.967 0/1:12:9,3:9:295:3:104:-6.09073,0,-23.2572 0/1:19:12,7:12:418:7:245:-16.6717,0,-32.2343 dDocent_Contig_13949 16 . A G 280.418 . AB=0.166667;ABP=20.3821;AC=1;AF=0.166667;AN=6;AO=3;CIGAR=1M3D1X1M1X1M1X;DP=32;DPB=31;DPRA=0;EPP=9.52472;EPPR=42.0968;GTI=0;LEN=1;MEANALT=1.5;MQM=45;MQMR=60;NS=3;NUMALT=2;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=114;QR=710;RO=18;RPL=0;RPP=9.52472;RPPR=42.0968;RPR=3;RUN=1;SAF=3;SAP=9.52472;SAR=0;SRF=18;SRP=42.0968;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|0:14:5,0,9:5:201:0,9:0,348:-27.4621,-28.9673,-45.5371,0,-16.966,-14.2567 0|0:16:12,2,2:12:469:2,2:78,81:-3.07892,-0.460626,-38.405,0,-32.3259,-37.9651 0|1:2:1,1,0:1:40:1,0:36,0:-2.94646,0,-3.39362,-3.24749,-3.69465,-6.56492 dDocent_Contig_13950 90 . G T 94.0701 . AB=0.571429;ABP=3.32051;AC=1;AF=0.166667;AN=6;AO=4;CIGAR=1X;DP=39;DPB=39;DPRA=0.4375;EPP=11.6962;EPPR=79.0118;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=141;QR=1178;RO=35;RPL=4;RPP=11.6962;RPPR=79.0118;RPR=0;RUN=1;SAF=4;SAP=11.6962;SAR=0;SRF=35;SRP=79.0118;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:7:3,4:3:104:4:141:-10.9299,0,-7.59588 0/0:21:21,0:21:697:0:0:0,-6.32163,-63.0408 0/0:11:11,0:11:377:0:0:0,-3.31133,-34.2606 dDocent_Contig_13951 8 . C G 116.224 . AB=0.285714;ABP=5.80219;AC=1;AF=0.166667;AN=6;AO=2;CIGAR=1X3M1X1M;DP=66;DPB=66;DPRA=0.2;EPP=7.35324;EPPR=113.755;GTI=0;LEN=1;MEANALT=1;MQM=31;MQMR=60;NS=3;NUMALT=4;ODDS=0;PAIRED=0;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=62;QR=1945;RO=51;RPL=0;RPP=7.35324;RPPR=113.755;RPR=2;RUN=1;SAF=0;SAP=7.35324;SAR=2;SRF=51;SRP=113.755;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|0:35:32,0,0,2,0:32:1230:0,0,2,0:0,0,76,0:0,-9.63296,-110.605,-9.63296,-110.605,-110.605,-3.4133,-104.373,-104.373,-103.77,-9.63296,-110.605,-110.605,-104.373,-110.605 0|1:7:5,0,2,0,0:5:175:0,2,0,0:0,62,0,0:-3.21116,-4.71631,-19.0023,0,-14.5858,-13.9838,-4.71631,-19.0023,-14.5858,-19.0023,-4.71631,-19.0023,-14.5858,-19.0023,-19.0023 0|0:24:14,5,0,0,5:14:540:5,0,0,5:196,0,0,183:-11.9163,0,-42.8528,-16.1307,-44.358,-60.4781,-16.1307,-44.358,-60.4781,-60.4781,-1.1913,-29.4108,-45.5302,-45.5302,-44.025 dDocent_Contig_13952 9 . G A 50.2207 . AB=0.138889;ABP=43.7857;AC=1;AF=0.25;AN=4;AO=5;CIGAR=1X;DP=43;DPB=43;DPRA=5.14286;EPP=13.8677;EPPR=85.5263;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=2;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=0.947368;PAO=0;PQA=0;PQR=0;PRO=0;QA=191;QR=1458;RO=38;RPL=0;RPP=13.8677;RPPR=85.5263;RPR=5;RUN=1;SAF=5;SAP=13.8677;SAR=0;SRF=38;SRP=85.5263;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:36:31,5:31:1188:5:191:-6.72102,0,-96.3801 ./.:.:.:.:.:.:.:. 0/0:7:7,0:7:270:0:0:0,-2.10721,-24.6655 dDocent_Contig_13953 7 . A G 221.006 . AB=0.333333;ABP=11.6962;AC=2;AF=0.333333;AN=6;AO=13;CIGAR=1X;DP=69;DPB=69;DPRA=0;EPP=31.2394;EPPR=120.27;GTI=0;LEN=1;MEANALT=1.66667;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=425;QR=2079;RO=54;RPL=0;RPP=31.2394;RPPR=120.27;RPR=13;RUN=1;SAF=13;SAP=31.2394;SAR=0;SRF=54;SRP=120.27;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:33:32,1:32:1234:1:32:0,-6.73468,-108.154 0/1:29:17,10:17:651:10:320:-20.7998,0,-50.6239 0/1:7:5,2:5:194:2:73:-4.82349,0,-15.7256 dDocent_Contig_13954 9 . G T 223.876 . AB=0.209677;ABP=48.4011;AC=3;AF=0.5;AN=6;AO=13;CIGAR=2X;DP=62;DPB=62;DPRA=0;EPP=31.2394;EPPR=109.412;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=505;QR=1873;RO=49;RPL=0;RPP=31.2394;RPPR=109.412;RPR=13;RUN=1;SAF=13;SAP=31.2394;SAR=0;SRF=49;SRP=109.412;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|1:25:20,5:20:769:5:189:-9.84799,0,-62.013 0|1:18:13,5:13:502:5:198:-12.7792,0,-40.11 0|1:19:16,3:16:602:3:118:-5.28315,0,-48.7966 dDocent_Contig_13955 8 . C T 1453.14 . AB=0.172973;ABP=174.862;AC=0;AF=0;AN=6;AO=32;CIGAR=1X5M;DP=185;DPB=175.167;DPRA=0;EPP=72.4974;EPPR=207.129;GTI=0;LEN=1;MEANALT=2.66667;MQM=60;MQMR=58.8511;NS=3;NUMALT=3;ODDS=0;PAIRED=0.96875;PAIREDR=0.925532;PAO=0;PQA=0;PQR=0;PRO=0;QA=1235;QR=3648;RO=94;RPL=0;RPP=72.4974;RPPR=207.129;RPR=32;RUN=1;SAF=32;SAP=72.4974;SAR=0;SRF=94;SRP=207.129;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|0:133:70,0,36,26:70:2713:0,36,26:0,1387,1010:-92.8019,-113.874,-330.73,0,-216.854,-206.017,-30.8765,-247.733,-133.856,-239.906 0|0:14:6,0,7,1:6:231:0,7,1:0,275,32:-20.8765,-22.6827,-41.6501,0,-19.0224,-16.9152,-20.1134,-39.0767,-16.4533,-38.7757 0|0:38:18,2,13,5:18:704:2,13,5:73,517,193:-37.1586,-36.6168,-93.8968,0,-51.9304,-53.9783,-26.7283,-78.6493,-42.0415,-83.1057 dDocent_Contig_13958 8 . C T 442.839 . AB=0.343137;ABP=24.8102;AC=3;AF=0.5;AN=6;AO=35;CIGAR=2X;DP=102;DPB=102;DPRA=0;EPP=79.0118;EPPR=148.499;GTI=0;LEN=1;MEANALT=1;MQM=25.8;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=0;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=1334;QR=2553;RO=67;RPL=0;RPP=79.0118;RPPR=148.499;RPR=35;RUN=1;SAF=35;SAP=79.0118;SAR=0;SRF=67;SRP=148.499;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|1:61:46,15:46:1744:15:578:-18.0304,0,-138.854 0|1:21:8,13:8:308:13:495:-20.9099,0,-21.7607 0|1:20:13,7:13:501:7:261:-10.8666,0,-39.4174 dDocent_Contig_13961 41 . T C 406.826 . AB=0.388889;ABP=6.8707;AC=4;AF=0.666667;AN=6;AO=15;CIGAR=1X1M1X;DP=37;DPB=37;DPRA=0;EPP=35.5824;EPPR=50.7827;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=599;QR=889;RO=22;RPL=0;RPP=35.5824;RPPR=50.7827;RPR=15;RUN=1;SAF=15;SAP=35.5824;SAR=0;SRF=22;SRP=50.7827;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|1:19:8,11:8:322:11:442:-34.4168,0,-23.6289 1|1:1:0,1:0:0:1:40:-3.99568,-0.30103,0 0|1:17:14,3:14:567:3:117:-5.79219,0,-46.2556 dDocent_Contig_13962 132 . G A 52.0085 . AB=0.190476;ABP=20.4855;AC=1;AF=0.25;AN=4;AO=4;CIGAR=1X;DP=33;DPB=33;DPRA=1.75;EPP=11.6962;EPPR=65.983;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=2;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=143;QR=956;RO=29;RPL=0;RPP=11.6962;RPPR=65.983;RPR=4;RUN=1;SAF=0;SAP=11.6962;SAR=4;SRF=0;SRP=65.983;SRR=29;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:21:17,4:17:566:4:143:-6.89982,0,-44.9314 ./.:.:.:.:.:.:.:. 0/0:12:12,0:12:390:0:0:0,-3.61236,-35.4129 dDocent_Contig_13963 19 . T A 192.401 . AB=0.150685;ABP=80.3802;AC=1;AF=0.166667;AN=6;AO=11;CIGAR=4M1X6M1X;DP=87;DPB=85.3333;DPRA=2.60714;EPP=26.8965;EPPR=155.013;GTI=0;LEN=1;MEANALT=2;MQM=60;MQMR=60;NS=3;NUMALT=2;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=422;QR=2709;RO=70;RPL=0;RPP=26.8965;RPPR=155.013;RPR=11;RUN=1;SAF=11;SAP=26.8965;SAR=0;SRF=70;SRP=155.013;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|1:60:50,0,9:50:1930:0,9:0,343:-13.3286,-28.3801,-186.895,0,-158.759,-156.05 0|0:13:7,4,2:7:272:4,2:142,79:-9.43413,0,-21.1421,-5.0271,-15.8438,-26.7975 0|0:14:13,1,0:13:507:1,0:33,0:0,-0.915285,-42.6781,-3.91339,-42.9791,-45.6431 dDocent_Contig_13964 9 . G A 1564.11 . AB=0.482759;ABP=3.23494;AC=2;AF=0.333333;AN=6;AO=42;CIGAR=2X;DP=127;DPB=127;DPRA=0;EPP=94.2121;EPPR=131.127;GTI=0;LEN=1;MEANALT=2;MQM=60;MQMR=60;NS=3;NUMALT=2;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=1614;QR=2241;RO=59;RPL=0;RPP=94.2121;RPPR=131.127;RPR=42;RUN=1;SAF=42;SAP=94.2121;SAR=0;SRF=59;SRP=131.127;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|1:74:28,37,9:28:1074:37,9:1416,341:-107.766,0,-77.0196,-88.242,-60.2057,-173.687 1|0:13:2,5,6:2:77:5,6:198,223:-27.6145,-11.9085,-16.7291,-9.98552,0,-14.4986 0|0:40:29,0,11:29:1090:0,11:0,425:-26.554,-35.2839,-124.572,0,-89.6716,-86.3603 dDocent_Contig_13965 25 . T A 131.238 . AB=0.352941;ABP=6.20364;AC=2;AF=0.333333;AN=6;AO=6;CIGAR=1X1M1X1M2X3M1X2M1X1M1X;DP=26;DPB=26;DPRA=0.944444;EPP=16.0391;EPPR=44.2683;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=233;QR=719;RO=19;RPL=0;RPP=16.0391;RPPR=44.2683;RPR=6;RUN=1;SAF=6;SAP=16.0391;SAR=0;SRF=19;SRP=44.2683;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|0:9:8,0:8:308:0:0:0,-2.40824,-27.9588 0|1:3:1,2:1:35:2:78:-6.50038,0,-2.59554 0|1:14:10,4:10:376:4:155:-10.111,0,-29.9754 dDocent_Contig_13966 34 . T C 182.059 . AB=0.4375;ABP=3.55317;AC=1;AF=0.166667;AN=6;AO=7;CIGAR=1X;DP=45;DPB=45;DPRA=1.10345;EPP=18.2106;EPPR=85.5263;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=272;QR=1495;RO=38;RPL=0;RPP=18.2106;RPPR=85.5263;RPR=7;RUN=1;SAF=7;SAP=18.2106;SAR=0;SRF=38;SRP=85.5263;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:24:24,0:24:946:0:0:0,-7.22472,-85.4447 0/0:5:5,0:5:203:0:0:0,-1.50515,-18.6531 0/1:16:9,7:9:346:7:272:-20.0297,0,-26.6788 dDocent_Contig_13968 150 . C T 1753.78 . AB=0.135922;ABP=121.598;AC=0;AF=0;AN=6;AO=14;CIGAR=3M1X2M1X;DP=103;DPB=103.857;DPRA=0;EPP=33.4109;EPPR=61.6401;GTI=0;LEN=1;MEANALT=2.66667;MQM=60;MQMR=60;NS=3;NUMALT=3;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=531;QR=982;RO=27;RPL=0;RPP=33.4109;RPPR=61.6401;RPR=14;RUN=1;SAF=0;SAP=33.4109;SAR=14;SRF=0;SRP=61.6401;SRR=27;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|0:60:12,0,10,37:12:436:0,10,37:0,390,1459:-116.441,-120.054,-155.652,-87.996,-123.594,-120.584,0,-35.6041,-3.52633,-24.466 0|0:17:5,3,1,8:5:174:3,1,8:115,33,322:-25.0542,-17.1235,-30.3497,-23.8968,-28.5883,-37.7262,0,-4.68224,-11.4688,-11.7253 0|0:26:10,0,3,13:10:372:0,3,13:0,108,515:-39.4052,-42.4155,-72.8546,-33.6113,-64.0465,-63.1434,0,-30.4549,-21.6466,-26.5415 dDocent_Contig_13969 7 . A G 355.058 . AB=0.2;ABP=104.635;AC=2;AF=0.333333;AN=6;AO=26;CIGAR=2X;DP=139;DPB=139;DPRA=7.22222;EPP=59.4686;EPPR=241.872;GTI=0;LEN=1;MEANALT=2;MQM=60;MQMR=59.7818;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=0.990909;PAO=0;PQA=0;PQR=0;PRO=0;QA=857;QR=4169;RO=110;RPL=0;RPP=59.4686;RPPR=241.872;RPR=26;RUN=1;SAF=26;SAP=59.4686;SAR=0;SRF=110;SRP=241.872;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|1:87:67,19:67:2517:19:655:-33.1572,0,-200.633 0|0:9:9,0:9:345:0:0:0,-2.70927,-31.0356 0|1:43:34,7:34:1307:7:202:-5.87149,0,-105.334 dDocent_Contig_13970 9 . G A 307.553 . AB=0.444444;ABP=3.73412;AC=2;AF=0.333333;AN=6;AO=12;CIGAR=1X;DP=35;DPB=35;DPRA=1.6875;EPP=29.068;EPPR=52.9542;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=463;QR=839;RO=23;RPL=0;RPP=29.068;RPPR=52.9542;RPR=12;RUN=1;SAF=12;SAP=29.068;SAR=0;SRF=23;SRP=52.9542;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:19:9,10:9:345:10:386:-29.377,0,-25.6893 0/0:8:8,0:8:260:0:0:0,-2.40824,-23.7103 0/1:8:6,2:6:234:2:77:-4.9009,0,-19.0229 dDocent_Contig_13971 18 . A G 153.877 . AB=0.105263;ABP=28.7251;AC=0;AF=0;AN=6;AO=2;CIGAR=2X1M1D10M;DP=40;DPB=39.6429;DPRA=2.375;EPP=7.35324;EPPR=44.2683;GTI=0;LEN=1;MEANALT=7;MQM=41;MQMR=60;NS=3;NUMALT=5;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=75;QR=746;RO=19;RPL=0;RPP=7.35324;RPPR=44.2683;RPR=2;RUN=1;SAF=2;SAP=7.35324;SAR=0;SRF=19;SRP=44.2683;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|0:13:10,0,3,0,0,0:10:394:0,3,0,0,0:0,83,0,0,0:-2.99321,-6.00351,-38.5317,0,-32.8088,-31.9057,-6.00351,-38.5317,-32.8088,-38.5317,-6.00351,-38.5317,-32.8088,-38.5317,-38.5317,-6.00351,-38.5317,-32.8088,-38.5317,-38.5317,-38.5317 0|0:19:2,2,4,3,2,4:2:80:2,4,3,2,4:80,121,118,75,162:-15.8926,-9.89816,-15.8926,-7.91598,-7.91598,-13.3051,-6.77921,-6.77921,-4.79919,-12.4733,-10.6355,-10.6355,-8.65419,-7.51698,-16.6294,-3.12017,-3.12017,-1.14181,0,-3.85839,-8.51472 0|0:8:7,0,0,0,0,0:7:272:0,0,0,0,0:0,0,0,0,0:0,-2.10721,-24.4556,-2.10721,-24.4556,-24.4556,-2.10721,-24.4556,-24.4556,-24.4556,-2.10721,-24.4556,-24.4556,-24.4556,-24.4556,-2.10721,-24.4556,-24.4556,-24.4556,-24.4556,-24.4556 dDocent_Contig_13972 95 . G C 70.6587 . AB=0.163265;ABP=51.2702;AC=2;AF=0.333333;AN=6;AO=8;CIGAR=1X;DP=66;DPB=66;DPRA=1.44118;EPP=20.3821;EPPR=128.956;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=266;QR=2002;RO=58;RPL=8;RPP=20.3821;RPPR=128.956;RPR=0;RUN=1;SAF=8;SAP=20.3821;SAR=0;SRF=58;SRP=128.956;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:42:35,7:35:1207:7:232:-8.5613,0,-96.2914 0/0:17:17,0:17:586:0:0:0,-5.11751,-53.0655 0/1:7:6,1:6:209:1:34:-1.2917,0,-17.0438 dDocent_Contig_13973 35 . G A 103.678 . AB=0.5;ABP=3.0103;AC=1;AF=0.166667;AN=6;AO=4;CIGAR=1X;DP=18;DPB=18;DPRA=1.6;EPP=11.6962;EPPR=33.4109;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=8.67362e-19;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=158;QR=535;RO=14;RPL=0;RPP=11.6962;RPPR=33.4109;RPR=4;RUN=1;SAF=4;SAP=11.6962;SAR=0;SRF=14;SRP=33.4109;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:5:5,0:5:190:0:0:0,-1.50515,-17.4638 0/1:8:4,4:4:142:4:158:-12.1917,0,-10.7137 0/0:5:5,0:5:203:0:0:0,-1.50515,-18.6531 dDocent_Contig_13974 36 . T A 1254.75 . AB=0.106383;ABP=382.51;AC=2;AF=0.333334;AN=6;AO=30;CIGAR=3M1X1M;DP=282;DPB=282;DPRA=0;EPP=68.1545;EPPR=330.903;GTI=0;LEN=1;MEANALT=5.66667;MQM=60;MQMR=60;NS=3;NUMALT=4;ODDS=5.55112e-17;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=1190;QR=5814;RO=151;RPL=0;RPP=68.1545;RPPR=330.903;RPR=30;RUN=1;SAF=30;SAP=68.1545;SAR=0;SRF=151;SRP=330.903;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|0:125:58,14,29,8,11:58:2225:14,29,8,11:517,1114,324,433:-73.978,-49.159,-227.556,0,-140.332,-173.882,-64.7186,-205.052,-155.894,-244.926,-55.8184,-196.152,-146.993,-211.715,-235.122 0|1:72:39,15,2,5,7:39:1493:15,2,5,7:561,79,204,282:-34.1805,0,-117.981,-39.4194,-115.996,-161.324,-29.0861,-105.664,-145.093,-150.089,-22.6739,-99.2515,-138.681,-128.349,-143.075 0|1:85:54,3,4,8,12:54:2096:3,4,8,12:110,160,322,475:-22.8396,-30.1067,-201.413,-25.9137,-189.136,-196.922,-12.5536,-175.777,-171.587,-182.359,0,-163.223,-159.032,-145.673,-168.601 dDocent_Contig_13975 15 . A C 61.4511 . AB=0.272727;ABP=7.94546;AC=1;AF=0.166667;AN=6;AO=3;CIGAR=2X;DP=37;DPB=37;DPRA=0.846154;EPP=9.52472;EPPR=76.8404;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=121;QR=1368;RO=34;RPL=0;RPP=9.52472;RPPR=76.8404;RPR=3;RUN=1;SAF=3;SAP=9.52472;SAR=0;SRF=34;SRP=76.8404;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|0:24:24,0:24:968:0:0:0,-7.22472,-87.4198 0|0:2:2,0:2:78:0:0:0,-0.60206,-7.40278 0|1:11:8,3:8:322:3:121:-7.96866,0,-26.037 dDocent_Contig_13976 21 . T A 35935.7 . AB=0.0625;ABP=3381.28;AC=0;AF=0;AN=6;AO=127;CIGAR=1X2M1X3M1X3M;DP=2032;DPB=2032;DPRA=0;EPP=278.787;EPPR=33.4109;GTI=0;LEN=1;MEANALT=42.3333;MQM=59.5197;MQMR=60;NS=3;NUMALT=4;ODDS=4.44089e-16;PAIRED=0.716535;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=4963;QR=541;RO=14;RPL=0;RPP=278.787;RPPR=33.4109;RPR=127;RUN=1;SAF=127;SAP=278.787;SAR=0;SRF=14;SRP=33.4109;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|0:907:5,54,37,286,262:5:190:54,37,286,262:2102,1416,10781,9936:-1670.56,-1499.86,-1499.19,-1556.06,-1399.43,-1560.5,-794.357,-637.732,-693.93,-723.844,-862.128,-705.503,-761.701,0,-798.84 0|0:619:2,45,32,198,150:2:79:45,32,198,150:1756,1209,7331,5616:-1046.28,-902.541,-895.496,-948.121,-810.284,-944.989,-451.243,-313.405,-358.985,-398.14,-589.134,-451.296,-496.876,0,-550.48 0|0:506:7,28,32,162,135:7:272:28,32,162,135:1105,1222,6133,5059:-882.251,-793.435,-807.357,-784.555,-715.982,-797.273,-387.769,-319.196,-310.317,-361.354,-474.236,-405.664,-396.784,0,-455.948 dDocent_Contig_13977 14 . C A 176.708 . AB=0.266667;ABP=17.1973;AC=2;AF=0.333333;AN=6;AO=8;CIGAR=1X;DP=55;DPB=55;DPRA=0.6;EPP=20.3821;EPPR=102.898;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=327;QR=1805;RO=46;RPL=0;RPP=20.3821;RPPR=102.898;RPR=8;RUN=1;SAF=8;SAP=20.3821;SAR=0;SRF=46;SRP=102.898;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:14:8,6:8:322:6:245:-18.2151,0,-25.1328 0/0:25:24,0:24:914:0:0:0,-7.22472,-82.1628 0/1:16:14,2:14:569:2:82:-2.9632,0,-46.7358 dDocent_Contig_13978 59 . T C 49.638 . AB=0.109375;ABP=87.8334;AC=1;AF=0.166667;AN=6;AO=7;CIGAR=1X;DP=101;DPB=101;DPRA=3.45946;EPP=18.2106;EPPR=207.129;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=282;QR=3639;RO=94;RPL=7;RPP=18.2106;RPPR=207.129;RPR=0;RUN=1;SAF=7;SAP=18.2106;SAR=0;SRF=94;SRP=207.129;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:64:57,7:57:2220:7:282:-6.48667,0,-180.706 0/0:8:8,0:8:300:0:0:0,-2.40824,-27.3516 0/0:29:29,0:29:1119:0:0:0,-8.72987,-100.985 dDocent_Contig_13979 55 . A T 66.7715 . AB=0.375;ABP=4.09604;AC=1;AF=0.166667;AN=6;AO=5;CIGAR=1X;DP=76;DPB=76;DPRA=0.527027;EPP=13.8677;EPPR=155.013;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=0.985714;PAO=0;PQA=0;PQR=0;PRO=0;QA=195;QR=2792;RO=70;RPL=5;RPP=13.8677;RPPR=155.013;RPR=0;RUN=1;SAF=5;SAP=13.8677;SAR=0;SRF=70;SRP=155.013;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:37:36,0:36:1434:0:0:0,-10.8371,-128.902 0/0:31:29,2:29:1161:2:78:0,-1.92863,-97.3676 0/1:8:5,3:5:197:3:117:-8.50105,0,-15.6973 dDocent_Contig_13980 10 . T C 2659.92 . AB=0.0970874;ABP=148.246;AC=2;AF=0.333333;AN=6;AO=10;CIGAR=1X1M1X4M;DP=103;DPB=103;DPRA=0;EPP=24.725;EPPR=24.725;GTI=0;LEN=1;MEANALT=2.33333;MQM=60;MQMR=60;NS=3;NUMALT=3;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=392;QR=391;RO=10;RPL=0;RPP=24.725;RPPR=24.725;RPR=10;RUN=1;SAF=10;SAP=24.725;SAR=0;SRF=10;SRP=24.725;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|0:73:5,1,6,61:5:194:1,6,61:40,244,2400:-200.083,-198.293,-213.931,-181.461,-194.104,-195.593,-4.20321,-16.8395,0,-1.77192 1|0:15:0,2,0,13:0:0:2,0,13:78,0,525:-50.0932,-43.6834,-43.0814,-50.0932,-43.6834,-50.0932,-6.80124,0,-6.80124,-2.88785 0|1:15:5,7,0,3:5:197:7,0,3:274,0,121:-21.0168,0,-14.0946,-22.5219,-16.2019,-38.7292,-12.5441,-6.22414,-28.7528,-27.8498 dDocent_Contig_13981 8 . C T 144.431 . AB=0.113095;ABP=221.45;AC=1;AF=0.166667;AN=6;AO=26;CIGAR=1X;DP=542;DPB=542;DPRA=3.80159;EPP=59.4686;EPPR=1123.49;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=59.9535;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=0.996124;PAO=0;PQA=0;PQR=0;PRO=0;QA=1015;QR=19814;RO=516;RPL=0;RPP=59.4686;RPPR=1123.49;RPR=26;RUN=1;SAF=26;SAP=59.4686;SAR=0;SRF=516;SRP=1123.49;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:311:304,7:304:11653:7:276:0,-68.4105,-1023.09 0/0:63:63,0:63:2409:0:0:0,-18.9649,-216.584 0/1:168:149,19:149:5752:19:739:-16.267,0,-467.059 dDocent_Contig_13982 67 . A G 136.524 . AB=0.243243;ABP=24.1968;AC=3;AF=0.5;AN=6;AO=9;CIGAR=1X3M1X;DP=37;DPB=37;DPRA=0;EPP=22.5536;EPPR=63.8115;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=311;QR=1058;RO=28;RPL=9;RPP=22.5536;RPPR=63.8115;RPR=0;RUN=1;SAF=9;SAP=22.5536;SAR=0;SRF=28;SRP=63.8115;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|1:20:18,2:18:686:2:71:-0.721459,0,-56.0534 0|1:4:2,2:2:77:2:71:-5.53794,0,-6.10502 0|1:13:8,5:8:295:5:169:-11.6297,0,-22.9899 dDocent_Contig_13983 28 . T C 175.392 . AB=0.15942;ABP=72.5289;AC=1;AF=0.166667;AN=6;AO=11;CIGAR=7M1X8M;DP=112;DPB=107.625;DPRA=3.2093;EPP=26.8965;EPPR=209.3;GTI=0;LEN=1;MEANALT=3;MQM=60;MQMR=60;NS=3;NUMALT=2;ODDS=6.93889e-18;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=426;QR=3720;RO=95;RPL=0;RPP=26.8965;RPPR=209.3;RPR=11;RUN=1;SAF=11;SAP=26.8965;SAR=0;SRF=95;SRP=209.3;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|1:69:53,4,11:53:2065:4,11:131,426:-19.0621,-24.4588,-192.974,0,-159.192,-166.449 0|0:8:8,0,0:8:316:0,0:0,0:0,-2.40824,-28.8065,-2.40824,-28.8065,-28.8065 0|0:35:34,1,0:34:1339:1,0:40,0:0,-6.54037,-116.79,-10.235,-117.091,-120.387 dDocent_Contig_13984 16 . A G 1089.63 . AB=0.275641;ABP=71.2168;AC=3;AF=0.5;AN=6;AO=43;CIGAR=6M1X;DP=156;DPB=157;DPRA=0;EPP=96.3836;EPPR=215.815;GTI=0;LEN=1;MEANALT=2.33333;MQM=60;MQMR=60;NS=3;NUMALT=3;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=1741;QR=3784;RO=98;RPL=0;RPP=96.3836;RPPR=215.815;RPR=43;RUN=1;SAF=43;SAP=96.3836;SAR=0;SRF=98;SRP=215.815;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|1:104:59,7,4,33:59:2297:7,4,33:268,149,1336:-92.4162,-88.1892,-274.855,-97.9826,-264.766,-285.552,0,-166.797,-176.591,-178.853 0|1:30:25,0,0,5:25:941:0,0,5:0,0,201:-9.43962,-16.9654,-94.0421,-16.9654,-94.0421,-94.0421,0,-77.474,-77.474,-75.9689 0|1:22:14,0,3,5:14:546:0,3,5:0,116,204:-12.6302,-16.8446,-61.7191,-7.32457,-52.1922,-51.2891,0,-44.8835,-35.3561,-43.3784 dDocent_Contig_13985 13 . T C 1529.68 . AB=0.509615;ABP=3.09382;AC=3;AF=0.5;AN=6;AO=53;CIGAR=1X;DP=104;DPB=104;DPRA=0;EPP=118.098;EPPR=113.755;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=0.849057;PAIREDR=0.980392;PAO=0;PQA=0;PQR=0;PRO=0;QA=2098;QR=1972;RO=51;RPL=0;RPP=118.098;RPPR=113.755;RPR=53;RUN=1;SAF=53;SAP=118.098;SAR=0;SRF=51;SRP=113.755;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:36:17,19:17:662:19:742:-56.2574,0,-49.073 0/1:42:24,18:24:913:18:719:-52.3958,0,-69.831 0/1:26:10,16:10:397:16:637:-49.838,0,-28.2615 dDocent_Contig_13986 7 . A C 148.323 . AB=0.269231;ABP=15.0369;AC=1;AF=0.166667;AN=6;AO=9;CIGAR=1X;DP=71;DPB=71;DPRA=2.72727;EPP=22.5536;EPPR=137.642;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=344;QR=2352;RO=62;RPL=0;RPP=22.5536;RPPR=137.642;RPR=9;RUN=1;SAF=9;SAP=22.5536;SAR=0;SRF=62;SRP=137.642;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:34:32,2:32:1212:2:76:0,-3.02035,-102.152 0/0:11:11,0:11:417:0:0:0,-3.31133,-37.8813 0/1:26:19,7:19:723:7:268:-16.6562,0,-57.5724 dDocent_Contig_13988 11 . T A 273.162 . AB=0.175258;ABP=91.8616;AC=3;AF=0.5;AN=6;AO=17;CIGAR=1X;DP=97;DPB=97;DPRA=0;EPP=39.9253;EPPR=174.557;GTI=0;LEN=1;MEANALT=1.33333;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=675;QR=2816;RO=79;RPL=0;RPP=39.9253;RPPR=174.557;RPR=17;RUN=1;SAF=17;SAP=39.9253;SAR=0;SRF=79;SRP=174.557;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:66:53,13:53:1916:13:514:-26.7389,0,-152.826 0/1:17:14,2:14:468:2:80:-2.58858,0,-37.5256 0/1:14:12,2:12:432:2:81:-3.47131,0,-35.0023 dDocent_Contig_13990 9 . G A 46.9999 . AB=0.16;ABP=28.1125;AC=1;AF=0.166667;AN=6;AO=7;CIGAR=1X;DP=82;DPB=82;DPRA=0;EPP=18.2106;EPPR=165.871;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=268;QR=2894;RO=75;RPL=0;RPP=18.2106;RPPR=165.871;RPR=7;RUN=1;SAF=7;SAP=18.2106;SAR=0;SRF=75;SRP=165.871;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:31:30,1:30:1154:1:39:0,-5.43537,-100.261 0/1:25:21,4:21:815:4:152:-6.52345,0,-66.1496 0/0:26:24,2:24:925:2:77:0,-0.517638,-76.2568 dDocent_Contig_13994 30 . G C 833.22 . AB=0.272;ABP=59.4512;AC=2;AF=0.333333;AN=6;AO=34;CIGAR=1X1M1X;DP=125;DPB=125;DPRA=0;EPP=76.8404;EPPR=189.757;GTI=0;LEN=1;MEANALT=1.66667;MQM=60;MQMR=60;NS=3;NUMALT=2;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=1344;QR=3147;RO=86;RPL=0;RPP=76.8404;RPPR=189.757;RPR=34;RUN=1;SAF=34;SAP=76.8404;SAR=0;SRF=86;SRP=189.757;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|1:79:54,25,0:54:1969:25,0:998,0:-66.338,0,-153.663,-82.5936,-161.189,-243.395 0|1:27:20,6,1:20:754:6,1:230,40:-12.8411,0,-59.9603,-15.5643,-58.4704,-77.0467 0|0:19:12,3,4:12:424:3,4:116,161:-9.66574,-3.75747,-37.3392,0,-24.9609,-33.2908 dDocent_Contig_13996 10 . G A 155.272 . AB=0.304348;ABP=10.6577;AC=2;AF=0.333333;AN=6;AO=7;CIGAR=1X;DP=36;DPB=36;DPRA=0.884615;EPP=18.2106;EPPR=65.983;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=280;QR=1159;RO=29;RPL=0;RPP=18.2106;RPPR=65.983;RPR=7;RUN=1;SAF=7;SAP=18.2106;SAR=0;SRF=29;SRP=65.983;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:12:7,5:7:281:5:199:-14.6751,0,-22.0498 0/0:13:13,0:13:511:0:0:0,-3.91339,-46.3293 0/1:11:9,2:9:367:2:81:-4.3744,0,-30.0839 dDocent_Contig_13997 60 . T C 465.208 . AB=0.189873;ABP=69.0066;AC=2;AF=0.333333;AN=6;AO=15;CIGAR=1X1M3I4M;DP=79;DPB=86.5;DPRA=0;EPP=35.5824;EPPR=109.412;GTI=0;LEN=1;MEANALT=1.66667;MQM=60;MQMR=60;NS=3;NUMALT=2;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=526;QR=1729;RO=49;RPL=15;RPP=35.5824;RPPR=109.412;RPR=0;RUN=1;SAF=15;SAP=35.5824;SAR=0;SRF=49;SRP=109.412;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|1:38:32,6,0:32:1133:6,0:213,0:-8.07728,0,-90.8384,-17.7102,-92.6445,-110 0|0:14:11,1,2:11:385:1,2:35,72:-2.57015,-3.03706,-34.0507,0,-28.4753,-30.721 1|0:27:6,8,13:6:211:8,13:278,463:-41.3589,-20.5662,-35.3325,-5.42203,0,-18.6863 dDocent_Contig_13998 8 . C A 65.8556 . AB=0.375;ABP=4.09604;AC=1;AF=0.166667;AN=6;AO=6;CIGAR=1X;DP=74;DPB=74;DPRA=0;EPP=16.0391;EPPR=150.67;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=232;QR=2603;RO=68;RPL=0;RPP=16.0391;RPPR=150.67;RPR=6;RUN=1;SAF=6;SAP=16.0391;SAR=0;SRF=68;SRP=150.67;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:34:33,1:33:1259:1:39:0,-6.33846,-109.7 0/0:32:30,2:30:1151:2:77:0,-2.32382,-96.5812 0/1:8:5,3:5:193:3:116:-8.40946,0,-15.3331 dDocent_Contig_14001 28 . T A 193.498 . AB=0.243243;ABP=24.1968;AC=1;AF=0.166667;AN=6;AO=9;CIGAR=1X;DP=75;DPB=75;DPRA=1.94737;EPP=9.04217;EPPR=146.327;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=0.555556;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=355;QR=2635;RO=66;RPL=0;RPP=22.5536;RPPR=146.327;RPR=9;RUN=1;SAF=7;SAP=9.04217;SAR=2;SRF=66;SRP=146.327;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:29:29,0:29:1153:0:0:0,-8.72987,-104.048 0/1:37:28,9:28:1115:9:355:-21.1737,0,-89.4983 0/0:9:9,0:9:367:0:0:0,-2.70927,-33.3953 dDocent_Contig_14002 8 . C T 69.7095 . AB=0.155556;ABP=49.3833;AC=3;AF=0.5;AN=6;AO=7;CIGAR=1X;DP=45;DPB=45;DPRA=0;EPP=18.2106;EPPR=85.5263;GTI=0;LEN=1;MEANALT=1;MQM=57.1429;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=268;QR=1478;RO=38;RPL=0;RPP=18.2106;RPPR=85.5263;RPR=7;RUN=1;SAF=7;SAP=18.2106;SAR=0;SRF=38;SRP=85.5263;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:21:19,2:19:739:2:77:-0.987512,0,-60.5194 0/1:7:5,2:5:193:2:78:-5.05834,0,-15.6341 0/1:17:14,3:14:546:3:113:-5.42146,0,-44.3689 dDocent_Contig_14003 9 . G A 30.6578 . AB=0.157895;ABP=22.325;AC=1;AF=0.166667;AN=6;AO=3;CIGAR=1M18I3M1X;DP=45;DPB=55.8;DPRA=1.46154;EPP=9.52472;EPPR=94.2121;GTI=0;LEN=1;MEANALT=1;MQM=40;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=119;QR=1596;RO=42;RPL=0;RPP=9.52472;RPPR=94.2121;RPR=3;RUN=1;SAF=3;SAP=9.52472;SAR=0;SRF=42;SRP=94.2121;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|1:19:16,3:16:610:3:119:-4.58826,0,-49.5198 0|0:6:6,0:6:223:0:0:0,-1.80618,-20.4279 0|0:20:20,0:20:763:0:0:0,-6.0206,-68.9992 dDocent_Contig_14004 110 . G T 837.745 . AB=0.617021;ABP=8.60069;AC=4;AF=0.666667;AN=6;AO=32;CIGAR=1X;DP=50;DPB=50;DPRA=0;EPP=72.4974;EPPR=42.0968;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=1116;QR=574;RO=18;RPL=0;RPP=72.4974;RPPR=42.0968;RPR=32;RUN=1;SAF=0;SAP=72.4974;SAR=32;SRF=0;SRP=42.0968;SRR=18;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:36:9,27:9:282:27:944:-74.4376,0,-14.8475 1/1:3:0,3:0:0:3:104:-9.70302,-0.90309,0 0/1:11:9,2:9:292:2:68:-3.14638,0,-23.2843 dDocent_Contig_14009 180 . A G 35.282 . AB=0.15;ABP=24.2907;AC=1;AF=0.166667;AN=6;AO=4;CIGAR=1X;DP=75;DPB=75;DPRA=8.875;EPP=11.6962;EPPR=157.185;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=0.943662;PAO=0;PQA=0;PQR=0;PRO=0;QA=163;QR=2453;RO=71;RPL=4;RPP=11.6962;RPPR=157.185;RPR=0;RUN=1;SAF=0;SAP=11.6962;SAR=4;SRF=0;SRP=157.185;SRR=71;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:51:50,1:50:1715:1:41:0,-11.258,-150.52 0/0:4:4,0:4:137:0:0:0,-1.20412,-12.6634 0/1:20:17,3:17:601:3:122:-5.35189,0,-48.3906 dDocent_Contig_14010 11 . C T 42.2554 . AB=0.101266;ABP=112.106;AC=1;AF=0.166667;AN=6;AO=8;CIGAR=1X;DP=105;DPB=105;DPRA=6.07692;EPP=20.3821;EPPR=213.643;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=0;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=324;QR=3805;RO=97;RPL=0;RPP=20.3821;RPPR=213.643;RPR=8;RUN=1;SAF=8;SAP=20.3821;SAR=0;SRF=97;SRP=213.643;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:79:71,8:71:2768:8:324:-5.74803,0,-225.453 0/0:2:2,0:2:78:0:0:0,-0.60206,-7.4033 0/0:24:24,0:24:959:0:0:0,-7.22472,-86.6118 dDocent_Contig_14011 72 . G A 1809.68 . AB=0.539474;ABP=4.03889;AC=4;AF=0.666667;AN=6;AO=68;CIGAR=1X;DP=104;DPB=104;DPRA=0;EPP=150.67;EPPR=81.1833;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=2329;QR=1201;RO=36;RPL=68;RPP=150.67;RPPR=81.1833;RPR=0;RUN=1;SAF=68;SAP=150.67;SAR=0;SRF=36;SRP=81.1833;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:63:27,36:27:922:36:1243:-93.2031,0,-64.3252 0/1:13:8,5:8:247:5:181:-12.7301,0,-18.6205 1/1:28:1,27:1:32:27:905:-78.5578,-5.22953,0 dDocent_Contig_14012 18 . C T 678.784 . AB=0.225352;ABP=96.0472;AC=2;AF=0.333333;AN=6;AO=33;CIGAR=1X;DP=202;DPB=202;DPRA=0;EPP=74.6689;EPPR=369.989;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=1302;QR=6758;RO=169;RPL=0;RPP=74.6689;RPPR=369.989;RPR=33;RUN=1;SAF=33;SAP=74.6689;SAR=0;SRF=169;SRP=369.989;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:109:81,28:81:3236:28:1106:-67.0114,0,-258.495 0/1:33:29,4:29:1159:4:155:-4.38927,0,-94.6571 0/0:60:59,1:59:2363:1:41:0,-13.9672,-208.722 dDocent_Contig_14013 181 . A G 317.685 . AB=0.275862;ABP=28.3192;AC=3;AF=0.5;AN=6;AO=16;CIGAR=1X;DP=58;DPB=58;DPRA=0;EPP=37.7539;EPPR=94.2121;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=593;QR=1595;RO=42;RPL=16;RPP=37.7539;RPPR=94.2121;RPR=0;RUN=1;SAF=0;SAP=37.7539;SAR=16;SRF=0;SRP=94.2121;SRR=42;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:26:23,3:23:858:3:120:-3.36112,0,-69.699 0/1:7:1,6:1:39:6:228:-18.7739,0,-1.78935 0/1:25:18,7:18:698:7:245:-14.8594,0,-55.6265 dDocent_Contig_14014 1 . N A 2893.01 . AB=0.037037;ABP=354.869;AC=6;AF=1;AN=6;AO=7;CIGAR=1X1M11I2M;DP=367;DPB=1350.25;DPRA=0;EPP=18.2106;EPPR=0;GTI=0;LEN=1;MEANALT=10.5;MQM=60;MQMR=0;NS=3;NUMALT=5;ODDS=0;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=183;PRO=5;QA=265;QR=0;RO=0;RPL=0;RPP=18.2106;RPPR=0;RPR=7;RUN=1;SAF=7;SAP=18.2106;SAR=0;SRF=0;SRP=0;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 1|1:178:0,4,80,11,8,0:0:0:4,80,11,8,0:150,1538,277,311,0:-119.812,-108.138,-106.934,-25.5629,-13.8904,-1.4805,-99.3946,-87.7209,-5.15536,-96.0832,-94.248,-82.5742,0,-73.8304,-91.8398,-119.812,-108.138,-25.5629,-99.3946,-94.248,-119.812 1|1:93:0,6,40,10,0,4:0:0:6,40,10,0,4:184,806,379,0,148:-80.9865,-67.5252,-65.719,-30.3817,-16.9247,-18.3405,-50.6067,-37.1439,0,-47.5964,-80.9865,-67.5252,-30.3817,-50.6067,-80.9865,-68.873,-55.4112,-18.268,-38.4918,-68.873,-67.6689 1|1:96:0,3,53,9,0,3:0:0:3,53,9,0,3:110,1046,341,0,117:-93.4643,-84.7026,-83.7995,-27.9155,-19.1562,-11.9609,-65.5445,-56.782,0,-62.8352,-93.4643,-84.7026,-27.9155,-65.5445,-93.4643,-83.8422,-75.0802,-18.2945,-55.9214,-83.8422,-82.9391 dDocent_Contig_14015 8 . C T 67.6836 . AB=0.15625;ABP=35.8538;AC=1;AF=0.166667;AN=6;AO=5;CIGAR=1X;DP=70;DPB=70;DPRA=1.68421;EPP=13.8677;EPPR=144.156;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=195;QR=2505;RO=65;RPL=0;RPP=13.8677;RPPR=144.156;RPR=5;RUN=1;SAF=5;SAP=13.8677;SAR=0;SRF=65;SRP=144.156;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:32:27,5:27:1040:5:195:-8.29124,0,-84.2751 0/0:9:9,0:9:348:0:0:0,-2.70927,-31.6803 0/0:29:29,0:29:1117:0:0:0,-8.72987,-100.832 dDocent_Contig_14016 8 . C A 190.482 . AB=0.257143;ABP=20.9405;AC=1;AF=0.166667;AN=6;AO=13;CIGAR=1X;DP=136;DPB=136;DPRA=5.68182;EPP=31.2394;EPPR=270.101;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=498;QR=4763;RO=123;RPL=0;RPP=31.2394;RPPR=270.101;RPR=13;RUN=1;SAF=13;SAP=31.2394;SAR=0;SRF=123;SRP=270.101;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:90:86,4:86:3326:4:153:0,-12.9511,-285.332 0/0:11:11,0:11:429:0:0:0,-3.31133,-38.9656 0/1:35:26,9:26:1008:9:345:-20.8721,0,-80.494 dDocent_Contig_14017 8 . C T 5116.68 . AB=0.0890411;ABP=431.356;AC=1;AF=0.166667;AN=6;AO=26;CIGAR=1X2M2X2M;DP=340;DPB=340;DPRA=0;EPP=59.4686;EPPR=141.985;GTI=0;LEN=1;MEANALT=8.5;MQM=60;MQMR=60;NS=3;NUMALT=5;ODDS=0;PAIRED=0.884615;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=1018;QR=2457;RO=64;RPL=0;RPP=59.4686;RPPR=141.985;RPR=26;RUN=1;SAF=26;SAP=59.4686;SAR=0;SRF=64;SRP=141.985;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 1|0:192:11,40,21,17,0,84:11:423:40,21,17,0,84:1555,820,663,0,3374:-366.235,-241.766,-264.452,-302.135,-209.082,-330.54,-315.05,-221.997,-282.366,-344.659,-369.546,-276.493,-336.862,-349.776,-404.273,-93.0545,0,-60.3698,-73.2842,-127.781,-102.495 0|0:48:21,2,0,1,3,19:21:803:2,0,1,3,19:79,0,39,122,768:-57.0167,-56.8374,-122.122,-63.3383,-122.724,-129.225,-60.1326,-119.518,-126.019,-125.718,-53.2736,-112.659,-119.161,-115.955,-118.257,0,-59.3963,-65.8984,-62.6922,-55.8321,-60.1788 0|0:100:32,20,5,2,0,33:32:1231:20,5,2,0,33:774,198,79,0,1315:-93.9394,-39.9916,-135.039,-87.2744,-124.762,-186.837,-97.071,-134.559,-181.841,-197.537,-103.572,-141.06,-188.342,-198.139,-204.64,0,-37.4867,-84.7691,-94.5657,-101.067,-91.133 dDocent_Contig_14018 71 . G A 167.952 . AB=0.173913;ABP=66.7383;AC=4;AF=0.666667;AN=6;AO=15;CIGAR=1X;DP=72;DPB=72;DPRA=0;EPP=35.5824;EPPR=126.784;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=3.46945e-18;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=434;QR=1925;RO=57;RPL=15;RPP=35.5824;RPPR=126.784;RPR=0;RUN=1;SAF=15;SAP=35.5824;SAR=0;SRF=57;SRP=126.784;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:52:46,6:46:1571:6:180:-0.84348,0,-126.027 1/1:3:0,3:0:0:3:87:-8.11899,-0.90309,0 0/1:17:11,6:11:354:6:167:-10.189,0,-27.0553 dDocent_Contig_14019 9 . G A 188.154 . AB=0.28125;ABP=16.3106;AC=2;AF=0.333333;AN=6;AO=9;CIGAR=1X;DP=51;DPB=51;DPRA=0.842105;EPP=22.5536;EPPR=94.2121;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=0.928571;PAO=0;PQA=0;PQR=0;PRO=0;QA=347;QR=1592;RO=42;RPL=0;RPP=22.5536;RPPR=94.2121;RPR=9;RUN=1;SAF=9;SAP=22.5536;SAR=0;SRF=42;SRP=94.2121;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:25:18,7:18:685:7:271:-17.2307,0,-54.456 0/1:7:5,2:5:193:2:76:-5.10746,0,-15.6341 0/0:19:19,0:19:714:0:0:0,-5.71957,-64.5883 dDocent_Contig_14020 107 . N C 709.086 . AB=0;ABP=0;AC=6;AF=1;AN=6;AO=24;CIGAR=1X;DP=24;DPB=24;DPRA=0;EPP=55.1256;EPPR=0;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=0;NS=3;NUMALT=1;ODDS=1.69407e-21;PAIRED=1;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=772;QR=0;RO=0;RPL=0;RPP=55.1256;RPPR=0;RPR=24;RUN=1;SAF=0;SAP=55.1256;SAR=24;SRF=0;SRP=0;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 1/1:14:0,14:0:0:14:452:-40.99,-4.21442,0 1/1:3:0,3:0:0:3:101:-9.42373,-0.90309,0 1/1:7:0,7:0:0:7:219:-20.0176,-2.10721,0 dDocent_Contig_14021 181 . G T 522.058 . AB=0.517241;ABP=3.08518;AC=4;AF=0.666667;AN=6;AO=18;CIGAR=1X;DP=32;DPB=32;DPRA=0;EPP=42.0968;EPPR=33.4109;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=0;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=704;QR=567;RO=14;RPL=18;RPP=42.0968;RPPR=33.4109;RPR=0;RUN=1;SAF=0;SAP=42.0968;SAR=18;SRF=0;SRP=33.4109;SRR=14;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:20:7,13:7:282:13:513:-40.4937,0,-19.732 1/1:3:0,3:0:0:3:110:-10.2582,-0.90309,0 0/1:9:7,2:7:285:2:81:-4.97646,0,-23.3151 dDocent_Contig_14022 126 . A C 235.163 . AB=0.375;ABP=5.18177;AC=2;AF=0.333333;AN=6;AO=9;CIGAR=2X1M;DP=53;DPB=53;DPRA=0;EPP=3.25157;EPPR=89.8692;GTI=0;LEN=1;MEANALT=1.33333;MQM=36.4444;MQMR=60;NS=3;NUMALT=2;ODDS=0;PAIRED=0;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=313;QR=1372;RO=40;RPL=0;RPP=22.5536;RPPR=89.8692;RPR=9;RUN=1;SAF=4;SAP=3.25157;SAR=5;SRF=0;SRP=89.8692;SRR=40;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|0:37:34,0,3:34:1175:0,3:0,90:0,-10.235,-105.781,-3.58039,-99.4019,-98.4989 0|1:8:0,4,4:0:0:4,4:139,149:-22.988,-11.8839,-10.6798,-11.452,0,-10.2479 0|1:8:6,0,2:6:197:0,2:0,74:-4.04989,-5.85607,-21.7659,0,-16.2469,-15.6448 dDocent_Contig_14023 29 . A T 55.1496 . AB=0.153846;ABP=43.6001;AC=1;AF=0.166667;AN=6;AO=6;CIGAR=1X;DP=76;DPB=76;DPRA=2.10811;EPP=3.0103;EPPR=155.013;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=0;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=205;QR=2774;RO=70;RPL=0;RPP=16.0391;RPPR=155.013;RPR=6;RUN=1;SAF=3;SAP=3.0103;SAR=3;SRF=70;SRP=155.013;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:39:33,6:33:1321:6:205:-7.0378,0,-107.414 0/0:5:5,0:5:202:0:0:0,-1.50515,-18.5619 0/0:32:32,0:32:1251:0:0:0,-9.63296,-112.861 dDocent_Contig_14024 155 . C T 253.45 . AB=0.375;ABP=7.35324;AC=2;AF=0.333333;AN=6;AO=12;CIGAR=1X;DP=38;DPB=38;DPRA=2.66667;EPP=29.068;EPPR=59.4686;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=1.73472e-18;PAIRED=0;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=420;QR=945;RO=26;RPL=0;RPP=29.068;RPPR=59.4686;RPR=12;RUN=1;SAF=0;SAP=29.068;SAR=12;SRF=0;SRP=59.4686;SRR=26;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:25:15,10:15:544:10:340:-23.3834,0,-41.7561 0/0:6:6,0:6:203:0:0:0,-1.80618,-18.6006 0/1:7:5,2:5:198:2:80:-5.48436,0,-16.0902 dDocent_Contig_14025 15 . A C 45.0282 . AB=0.135135;ABP=45.7942;AC=2;AF=0.333333;AN=6;AO=10;CIGAR=1X;DP=147;DPB=147;DPRA=0;EPP=24.725;EPPR=300.502;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=56.9489;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=0.919708;PAO=0;PQA=0;PQR=0;PRO=0;QA=406;QR=5393;RO=137;RPL=0;RPP=24.725;RPPR=300.502;RPR=10;RUN=1;SAF=10;SAP=24.725;SAR=0;SRF=137;SRP=300.502;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:110:105,5:105:4142:5:202:0,-14.5518,-344.6 0/1:9:7,2:7:286:2:81:-4.97646,0,-23.4055 0/1:28:25,3:25:965:3:123:-3.03595,0,-70.4721 dDocent_Contig_14026 54 . G C 121.113 . AB=0.156863;ABP=55.1682;AC=1;AF=0.166667;AN=6;AO=8;CIGAR=1X;DP=67;DPB=67;DPRA=6.375;EPP=20.3821;EPPR=131.127;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=0.75;PAIREDR=0.966102;PAO=0;PQA=0;PQR=0;PRO=0;QA=318;QR=2344;RO=59;RPL=8;RPP=20.3821;RPPR=131.127;RPR=0;RUN=1;SAF=8;SAP=20.3821;SAR=0;SRF=59;SRP=131.127;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:51:43,8:43:1708:8:318:-13.6341,0,-138.597 0/0:5:5,0:5:200:0:0:0,-1.50515,-18.3795 0/0:11:11,0:11:436:0:0:0,-3.31133,-39.5949 dDocent_Contig_14027 74 . T C 64.6937 . AB=0.6;ABP=3.44459;AC=1;AF=0.166667;AN=6;AO=3;CIGAR=1X;DP=19;DPB=19;DPRA=0.714286;EPP=9.52472;EPPR=37.7539;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=105;QR=462;RO=16;RPL=3;RPP=9.52472;RPPR=37.7539;RPR=0;RUN=1;SAF=3;SAP=9.52472;SAR=0;SRF=16;SRP=37.7539;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:9:9,0:9:258:0:0:0,-2.70927,-23.5035 0/1:5:2,3:2:56:3:105:-8.29101,0,-3.8142 0/0:5:5,0:5:148:0:0:0,-1.50515,-13.6139 dDocent_Contig_14028 21 . T G 7107.04 . AB=0.78125;ABP=178.9;AC=6;AF=1;AN=6;AO=200;CIGAR=1X7M;DP=256;DPB=238.25;DPRA=0;EPP=437.305;EPPR=37.7539;GTI=0;LEN=1;MEANALT=3;MQM=60;MQMR=60;NS=3;NUMALT=2;ODDS=0;PAIRED=0.9;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=8014;QR=636;RO=16;RPL=0;RPP=437.305;RPPR=37.7539;RPR=200;RUN=1;SAF=200;SAP=437.305;SAR=0;SRF=16;SRP=37.7539;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 1|1:153:8,14,128:8:320:14,128:556,5118:-438.554,-395.19,-417.336,-19.4117,0,-7.24178 1|1:30:2,3,25:2:80:3,25:118,1010:-85.7829,-76.6793,-82.366,-3.11007,0,-2.17712 1|1:73:6,18,47:6:236:18,47:701,1886:-191.803,-136,-149.994,-38.207,0,-43.4748 dDocent_Contig_14029 122 . C G 80.2067 . AB=0.666667;ABP=4.45795;AC=1;AF=0.166667;AN=6;AO=4;CIGAR=1X;DP=24;DPB=24;DPRA=0.666667;EPP=11.6962;EPPR=44.2683;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=126;QR=656;RO=19;RPL=0;RPP=11.6962;RPPR=44.2683;RPR=4;RUN=1;SAF=0;SAP=11.6962;SAR=4;SRF=0;SRP=44.2683;SRR=19;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:12:12,0:12:412:0:0:0,-3.61236,-37.4098 0/1:6:2,4:2:70:4:126:-9.84433,0,-4.84122 0/0:6:5,0:5:174:0:0:0,-1.50515,-15.6441 dDocent_Contig_14030 106 . N T 227.399 . AB=0;ABP=0;AC=2;AF=1;AN=2;AO=13;CIGAR=2X;DP=13;DPB=13;DPRA=0;EPP=31.2394;EPPR=0;GTI=0;LEN=1;MEANALT=1;MQM=20;MQMR=0;NS=1;NUMALT=1;ODDS=13.6161;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=430;QR=0;RO=0;RPL=0;RPP=31.2394;RPPR=0;RPR=13;RUN=1;SAF=0;SAP=31.2394;SAR=13;SRF=0;SRP=0;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 1|1:13:0,13:0:0:13:430:-22.7399,-3.91339,0 .:.:.:.:.:.:.:. .:.:.:.:.:.:.:. dDocent_Contig_14031 92 . G T 869.44 . AB=0.163636;ABP=57.0602;AC=2;AF=0.333333;AN=6;AO=9;CIGAR=2M1X1M1X;DP=69;DPB=69;DPRA=0;EPP=22.5536;EPPR=35.5824;GTI=0;LEN=1;MEANALT=3;MQM=60;MQMR=60;NS=3;NUMALT=4;ODDS=1.38778e-17;PAIRED=0.222222;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=310;QR=501;RO=15;RPL=9;RPP=22.5536;RPPR=35.5824;RPR=0;RUN=1;SAF=9;SAP=22.5536;SAR=0;SRF=15;SRP=35.5824;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|1:32:5,19,0,4,4:5:169:19,0,4,4:643,0,140,135:-50.6221,0,-7.978,-52.1272,-13.6976,-65.8267,-40.7345,-2.30287,-54.4343,-53.2301,-41.1857,-2.75742,-54.885,-43.4924,-53.6809 0|0:23:8,1,0,5,9:8:268:1,0,5,9:34,0,170,310:-22.775,-22.4255,-43.8259,-25.1833,-44.1269,-46.8849,-11.3948,-30.3371,-33.0951,-31.5899,0,-18.9432,-21.7014,-7.91004,-18.9922 1|0:14:2,4,3,0,5:2:64:4,3,0,5:132,105,0,174:-19.0677,-9.00327,-12.9498,-11.1241,-5.60772,-15.3737,-19.6698,-14.1539,-16.2768,-24.8229,-5.51691,0,-2.11821,-10.6692,-9.16403 dDocent_Contig_14032 9 . G C 641.413 . AB=0.666667;ABP=10.2485;AC=4;AF=0.666667;AN=6;AO=22;CIGAR=1X;DP=32;DPB=32;DPRA=0;EPP=50.7827;EPPR=24.725;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=840;QR=389;RO=10;RPL=0;RPP=50.7827;RPPR=24.725;RPR=22;RUN=1;SAF=22;SAP=50.7827;SAR=0;SRF=10;SRP=24.725;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:23:5,18:5:194:18:685:-55.0583,0,-10.9092 0/1:7:5,2:5:195:2:77:-5.20193,0,-15.817 1/1:2:0,2:0:0:2:78:-7.40347,-0.60206,0 dDocent_Contig_14034 189 . A T 38.4374 . AB=0.153846;ABP=30.0702;AC=2;AF=0.333333;AN=6;AO=6;CIGAR=1X;DP=55;DPB=55;DPRA=0;EPP=16.0391;EPPR=109.412;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=241;QR=1943;RO=49;RPL=6;RPP=16.0391;RPPR=109.412;RPR=0;RUN=1;SAF=0;SAP=16.0391;SAR=6;SRF=0;SRP=109.412;SRR=49;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:12:10,2:10:399:2:82:-4.16732,0,-32.6562 0/1:14:12,2:12:479:2:78:-3.18888,0,-39.2468 0/0:29:27,2:27:1065:2:81:0,-1.04414,-88.4549 dDocent_Contig_14035 27 . C T 246.732 . AB=0.344828;ABP=9.07545;AC=2;AF=0.333333;AN=6;AO=10;CIGAR=1X;DP=80;DPB=80;DPRA=0.284314;EPP=24.725;EPPR=155.013;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=1.73472e-18;PAIRED=1;PAIREDR=0.9;PAO=0;PQA=0;PQR=0;PRO=0;QA=397;QR=2811;RO=70;RPL=0;RPP=24.725;RPPR=155.013;RPR=10;RUN=1;SAF=10;SAP=24.725;SAR=0;SRF=70;SRP=155.013;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:51:51,0:51:2036:0:0:0,-15.3525,-183.424 0/1:9:8,1:8:325:1:40:-1.28641,0,-26.9104 0/1:20:11,9:11:450:9:357:-26.47,0,-34.8352 dDocent_Contig_14037 13 . A C 529.867 . AB=0.542857;ABP=3.56868;AC=3;AF=0.5;AN=6;AO=19;CIGAR=1X;DP=35;DPB=35;DPRA=0;EPP=44.2683;EPPR=37.7539;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=754;QR=649;RO=16;RPL=0;RPP=44.2683;RPPR=37.7539;RPR=19;RUN=1;SAF=19;SAP=44.2683;SAR=0;SRF=16;SRP=37.7539;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:18:10,8:10:404:8:318:-23.5672,0,-31.3017 0/1:6:1,5:1:41:5:198:-16.3912,0,-2.28839 0/1:11:5,6:5:204:6:238:-18.4824,0,-15.4327 dDocent_Contig_14039 16 . G T 180.894 . AB=0.35;ABP=6.91895;AC=1;AF=0.166667;AN=6;AO=7;CIGAR=1X;DP=29;DPB=29;DPRA=4.44444;EPP=18.2106;EPPR=50.7827;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=284;QR=892;RO=22;RPL=0;RPP=18.2106;RPPR=50.7827;RPR=7;RUN=1;SAF=7;SAP=18.2106;SAR=0;SRF=22;SRP=50.7827;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:5:5,0:5:202:0:0:0,-1.50515,-18.5621 0/1:20:13,7:13:527:7:284:-19.9132,0,-41.7562 0/0:4:4,0:4:163:0:0:0,-1.20412,-15.0584 dDocent_Contig_14040 13 . A T 374.304 . AB=0.0625;ABP=82.8119;AC=0;AF=0;AN=6;AO=3;CIGAR=2X2M1X1M1X1M;DP=103;DPB=103;DPRA=0;EPP=9.52472;EPPR=137.642;GTI=0;LEN=1;MEANALT=4;MQM=60;MQMR=60;NS=3;NUMALT=6;ODDS=1.38778e-17;PAIRED=0;PAIREDR=0.854839;PAO=0;PQA=0;PQR=0;PRO=0;QA=121;QR=2426;RO=62;RPL=0;RPP=9.52472;RPPR=137.642;RPR=3;RUN=1;SAF=3;SAP=9.52472;SAR=0;SRF=62;SRP=137.642;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|0:48:33,7,0,3,3,0,2:33:1301:7,0,3,3,0,2:278,0,117,121,0,78:-12.9533,0,-104.929,-22.8873,-107.036,-129.923,-13.2716,-97.4196,-120.306,-119.403,-12.9112,-97.0615,-119.948,-110.331,-119.045,-22.8873,-107.036,-129.923,-120.306,-119.948,-129.923,-16.4766,-100.625,-123.512,-113.895,-113.537,-123.512,-122.91 0|0:29:18,4,0,2,0,0,5:18:699:4,0,2,0,0,5:158,0,79,0,0,204:-11.4187,-3.83868,-60.057,-16.8373,-61.2611,-74.2633,-10.338,-54.7603,-67.7626,-67.1605,-16.8373,-61.2611,-74.2633,-67.7626,-74.2633,-16.8373,-61.2611,-74.2633,-67.7626,-74.2633,-74.2633,0,-44.4259,-57.4288,-50.9278,-57.4288,-57.4288,-55.9237 0|0:26:11,4,2,7,0,2,0:11:426:4,2,7,0,2,0:159,80,267,0,82,0:-18.5812,-8.79945,-42.5884,-15.3012,-37.2012,-49.6919,0,-21.8941,-28.3954,-32.8792,-21.8926,-43.7925,-50.294,-34.9864,-56.885,-15.1217,-37.0222,-43.524,-28.2163,-50.1152,-49.5131,-21.8926,-43.7925,-50.294,-34.9864,-56.885,-50.1152,-56.885 dDocent_Contig_14041 20 . A G 1308.57 . AB=0.255507;ABP=120.872;AC=3;AF=0.5;AN=6;AO=58;CIGAR=1X;DP=227;DPB=227;DPRA=0;EPP=128.956;EPPR=369.989;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=2264;QR=6676;RO=169;RPL=0;RPP=128.956;RPPR=369.989;RPR=58;RUN=1;SAF=58;SAP=128.956;SAR=0;SRF=169;SRP=369.989;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:146:102,44:102:4043:44:1716:-110.706,0,-319.933 0/1:18:15,3:15:602:3:122:-5.95395,0,-49.1008 0/1:63:52,11:52:2031:11:426:-19.7199,0,-164.031 dDocent_Contig_14042 55 . G C 138.297 . AB=0.272727;ABP=12.8806;AC=1;AF=0.166667;AN=6;AO=6;CIGAR=1X;DP=35;DPB=35;DPRA=3.38462;EPP=16.0391;EPPR=65.983;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=240;QR=1156;RO=29;RPL=6;RPP=16.0391;RPPR=65.983;RPR=0;RUN=1;SAF=6;SAP=16.0391;SAR=0;SRF=29;SRP=65.983;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:22:16,6:16:631:6:240:-15.3524,0,-50.4994 0/0:3:3,0:3:118:0:0:0,-0.90309,-11.0027 0/0:10:10,0:10:407:0:0:0,-3.0103,-36.9904 dDocent_Contig_14043 25 . T A 339.691 . AB=0.454545;ABP=3.20771;AC=3;AF=0.5;AN=6;AO=11;CIGAR=1X;DP=40;DPB=40;DPRA=0.369565;EPP=26.8965;EPPR=65.983;GTI=0;LEN=1;MEANALT=1;MQM=48;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=429;QR=1148;RO=29;RPL=0;RPP=26.8965;RPPR=65.983;RPR=11;RUN=1;SAF=11;SAP=26.8965;SAR=0;SRF=29;SRP=65.983;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:23:23,0:23:909:0:0:0,-6.92369,-82.1112 1/1:6:0,6:0:0:6:230:-20.7823,-1.80618,0 0/1:11:6,5:6:239:5:199:-14.7096,0,-18.5726 dDocent_Contig_14044 17 . A C 558.782 . AB=0.434783;ABP=4.70971;AC=2;AF=0.333333;AN=6;AO=20;CIGAR=1X;DP=52;DPB=52;DPRA=3.83333;EPP=46.4397;EPPR=70.3259;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=0.95;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=806;QR=1241;RO=31;RPL=0;RPP=46.4397;RPPR=70.3259;RPR=20;RUN=1;SAF=20;SAP=46.4397;SAR=0;SRF=31;SRP=70.3259;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:26:21,5:21:835:5:196:-10.1846,0,-67.6365 0/0:6:5,0:5:201:0:0:0,-1.50515,-18.0624 0/1:20:5,15:5:205:15:610:-49.2164,0,-12.8144 dDocent_Contig_14045 175 . G T 44.5063 . AB=0.4;ABP=3.44459;AC=1;AF=0.166667;AN=6;AO=2;CIGAR=1X;DP=54;DPB=54;DPRA=0.204082;EPP=7.35324;EPPR=115.927;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=82;QR=1988;RO=52;RPL=2;RPP=7.35324;RPPR=115.927;RPR=0;RUN=1;SAF=0;SAP=7.35324;SAR=2;SRF=0;SRP=115.927;SRR=52;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:11:11,0:11:426:0:0:0,-3.31133,-38.6919 0/0:38:38,0:38:1441:0:0:0,-11.4391,-129.956 0/1:5:3,2:3:121:2:82:-6.27453,0,-9.77505 dDocent_Contig_14046 11 . T C 30.1864 . AB=0.136364;ABP=28.2783;AC=1;AF=0.166667;AN=6;AO=4;CIGAR=1X;DP=70;DPB=70;DPRA=0.958333;EPP=11.6962;EPPR=121.454;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=0.863636;PAO=0;PQA=0;PQR=0;PRO=0;QA=164;QR=2655;RO=66;RPL=0;RPP=11.6962;RPPR=146.327;RPR=4;RUN=1;SAF=4;SAP=11.6962;SAR=0;SRF=63;SRP=121.454;SRR=3;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:24:23,1:23:918:1:41:0,-3.13015,-78.8308 0/1:22:19,3:19:763:3:123:-4.84213,0,-62.3676 0/0:24:24,0:24:974:0:0:0,-7.22472,-87.9563 dDocent_Contig_14047 32 . G A 98.42 . AB=0.227273;ABP=17.2236;AC=1;AF=0.166667;AN=6;AO=9;CIGAR=1X;DP=103;DPB=103;DPRA=0;EPP=22.5536;EPPR=207.129;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=349;QR=3702;RO=94;RPL=0;RPP=22.5536;RPPR=207.129;RPR=9;RUN=1;SAF=9;SAP=22.5536;SAR=0;SRF=94;SRP=207.129;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:38:37,1:37:1444:1:41:0,-7.34457,-126.11 0/0:43:40,3:40:1579:3:109:0,-2.77898,-132.188 0/1:22:17,5:17:679:5:199:-11.6659,0,-54.8173 dDocent_Contig_14048 18 . T A 379.538 . AB=0.466667;ABP=3.29983;AC=2;AF=0.333333;AN=6;AO=14;CIGAR=1X;DP=58;DPB=58;DPRA=0.535714;EPP=33.4109;EPPR=98.5551;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=553;QR=1741;RO=44;RPL=0;RPP=33.4109;RPPR=98.5551;RPR=14;RUN=1;SAF=14;SAP=33.4109;SAR=0;SRF=44;SRP=98.5551;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:28:28,0:28:1102:0:0:0,-8.42884,-99.4669 0/1:13:4,9:4:155:9:355:-28.3985,0,-10.4116 0/1:17:12,5:12:484:5:198:-13.0783,0,-38.7934 dDocent_Contig_14049 11 . T A 63.3392 . AB=0.166667;ABP=26.1727;AC=2;AF=0.333333;AN=6;AO=4;CIGAR=1X;DP=39;DPB=39;DPRA=0.8;EPP=11.6962;EPPR=79.0118;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=0;PAIREDR=0.685714;PAO=0;PQA=0;PQR=0;PRO=0;QA=164;QR=1397;RO=35;RPL=0;RPP=11.6962;RPPR=79.0118;RPR=4;RUN=1;SAF=4;SAP=11.6962;SAR=0;SRF=35;SRP=79.0118;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:12:9,3:9:353:3:123:-7.85243,0,-28.5148 0/1:12:11,1:11:446:1:41:-0.482207,0,-36.8832 0/0:15:15,0:15:598:0:0:0,-4.51545,-54.1574 dDocent_Contig_14050 84 . C G 192.387 . AB=0.34375;ABP=9.79615;AC=2;AF=0.333333;AN=6;AO=12;CIGAR=1X;DP=57;DPB=57;DPRA=0;EPP=29.068;EPPR=100.727;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=0.916667;PAIREDR=0.933333;PAO=0;PQA=0;PQR=0;PRO=0;QA=388;QR=1504;RO=45;RPL=12;RPP=29.068;RPPR=100.727;RPR=0;RUN=1;SAF=12;SAP=29.068;SAR=0;SRF=45;SRP=100.727;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:25:24,1:24:786:1:35:0,-4.02712,-67.5442 0/1:18:12,6:12:404:6:208:-13.6411,0,-31.2664 0/1:14:9,5:9:314:5:145:-9.12053,0,-24.3835 dDocent_Contig_14051 89 . T C 650.25 . AB=0.305556;ABP=38.4777;AC=3;AF=0.5;AN=6;AO=33;CIGAR=1X;DP=108;DPB=108;DPRA=0;EPP=74.6689;EPPR=165.871;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=6.93889e-18;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=1134;QR=2578;RO=75;RPL=33;RPP=74.6689;RPPR=165.871;RPR=0;RUN=1;SAF=33;SAP=74.6689;SAR=0;SRF=75;SRP=165.871;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:63:50,13:50:1712:13:453:-22.1379,0,-135.402 0/1:25:21,4:21:727:4:140:-5.41918,0,-58.2263 0/1:20:4,16:4:139:16:541:-42.9907,0,-6.83209 dDocent_Contig_14053 98 . N A 69.056 . AB=0;ABP=0;AC=2;AF=1;AN=2;AO=3;CIGAR=1X;DP=3;DPB=3;DPRA=0;EPP=9.52472;EPPR=0;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=0;NS=1;NUMALT=1;ODDS=6.68461;PAIRED=1;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=74;QR=0;RO=0;RPL=3;RPP=9.52472;RPPR=0;RPR=0;RUN=1;SAF=3;SAP=9.52472;SAR=0;SRF=0;SRP=0;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 1/1:3:0,3:0:0:3:74:-6.90506,-0.90309,0 ./.:.:.:.:.:.:.:. ./.:.:.:.:.:.:.:. dDocent_Contig_14054 13 . G A 204.121 . AB=0.538462;ABP=3.17734;AC=1;AF=0.25;AN=4;AO=7;CIGAR=1X;DP=18;DPB=18;DPRA=2.6;EPP=18.2106;EPPR=26.8965;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=2;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=285;QR=445;RO=11;RPL=0;RPP=18.2106;RPPR=26.8965;RPR=7;RUN=1;SAF=7;SAP=18.2106;SAR=0;SRF=11;SRP=26.8965;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:13:6,7:6:240:7:285:-22.111,0,-18.0621 ./.:.:.:.:.:.:.:. 0/0:5:5,0:5:205:0:0:0,-1.50515,-18.835 dDocent_Contig_14055 34 . T C 2651.25 . AB=0.57485;ABP=11.1371;AC=3;AF=0.5;AN=6;AO=96;CIGAR=1X;DP=167;DPB=167;DPRA=0;EPP=202.876;EPPR=148.499;GTI=0;LEN=1;MEANALT=1.66667;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=0.989583;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=3545;QR=1211;RO=67;RPL=0;RPP=211.472;RPPR=148.499;RPR=96;RUN=1;SAF=95;SAP=202.876;SAR=1;SRF=67;SRP=148.499;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:120:45,73:45:788:73:2752:-212.25,0,-35.5041 0/1:5:2,3:2:56:3:117:-9.40414,0,-3.81276 0/1:42:20,20:20:367:20:676:-48.992,0,-21.0815 dDocent_Contig_14056 31 . C T 47.7027 . AB=0.5;ABP=3.0103;AC=1;AF=0.166667;AN=6;AO=2;CIGAR=1X;DP=22;DPB=22;DPRA=0.444444;EPP=7.35324;EPPR=46.4397;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=79;QR=807;RO=20;RPL=0;RPP=7.35324;RPPR=46.4397;RPR=2;RUN=1;SAF=2;SAP=7.35324;SAR=0;SRF=20;SRP=46.4397;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:4:2,2:2:82:2:79:-6.29312,0,-6.57556 0/0:7:7,0:7:281:0:0:0,-2.10721,-25.6611 0/0:11:11,0:11:444:0:0:0,-3.31133,-40.3151 dDocent_Contig_14058 13 . G C 411.901 . AB=0.288136;ABP=26.0132;AC=2;AF=0.333333;AN=6;AO=17;CIGAR=1X;DP=65;DPB=65;DPRA=4.91667;EPP=39.9253;EPPR=107.241;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=686;QR=1897;RO=48;RPL=0;RPP=39.9253;RPPR=107.241;RPR=17;RUN=1;SAF=17;SAP=39.9253;SAR=0;SRF=48;SRP=107.241;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:35:23,12:23:910:12:483:-33.2848,0,-71.6738 0/0:6:6,0:6:236:0:0:0,-1.80618,-21.6123 0/1:24:19,5:19:751:5:203:-11.4281,0,-60.6902 dDocent_Contig_14059 63 . G C 1443.4 . AB=0.458716;ABP=4.62396;AC=4;AF=0.666667;AN=6;AO=50;CIGAR=1X3M;DP=109;DPB=109;DPRA=0;EPP=111.584;EPPR=107.241;GTI=0;LEN=1;MEANALT=2;MQM=60;MQMR=60;NS=3;NUMALT=2;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=1954;QR=1791;RO=48;RPL=50;RPP=111.584;RPPR=107.241;RPR=0;RUN=1;SAF=50;SAP=111.584;SAR=0;SRF=48;SRP=107.241;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|1:71:30,4,37:30:1134:4,37:152,1479:-112.81,-109.377,-201.115,0,-80.4843,-81.8122 1|1:6:0,1,5:0:0:1,5:39,181:-18.3447,-15.1341,-14.8331,-3.59553,0,-2.09038 0|1:32:18,6,8:18:657:6,8:229,294:-18.6041,-5.22834,-57.093,0,-34.8678,-51.2519 dDocent_Contig_14060 9 . C G 49.6153 . AB=0.114754;ABP=81.6461;AC=1;AF=0.166667;AN=6;AO=11;CIGAR=1X;DP=173;DPB=173;DPRA=1.10185;EPP=26.8965;EPPR=243.695;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=54.8827;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=0.660494;PAO=0;PQA=0;PQR=0;PRO=0;QA=426;QR=6133;RO=162;RPL=0;RPP=26.8965;RPPR=354.789;RPR=11;RUN=1;SAF=11;SAP=26.8965;SAR=0;SRF=148;SRP=243.695;SRR=14;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:61:54,7:54:2045:7:272:-6.4844,0,-160.774 0/0:54:54,0:54:2035:0:0:0,-16.2556,-179.078 0/0:58:54,4:54:2053:4:154:0,-3.22628,-153.632 dDocent_Contig_14061 209 . N G 185.243 . AB=0;ABP=0;AC=4;AF=1;AN=4;AO=5;CIGAR=1X;DP=5;DPB=5;DPRA=0;EPP=13.8677;EPPR=0;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=0;NS=2;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=194;QR=0;RO=0;RPL=5;RPP=13.8677;RPPR=0;RPR=0;RUN=1;SAF=0;SAP=13.8677;SAR=5;SRF=0;SRP=0;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL ./.:.:.:.:.:.:.:. 1/1:4:0,4:0:0:4:155:-14.3254,-1.20412,0 1/1:1:0,1:0:0:1:39:-3.89656,-0.30103,0 dDocent_Contig_14062 123 . C T 104.267 . AB=0.191489;ABP=41.8658;AC=3;AF=0.5;AN=6;AO=9;CIGAR=1M1X4M;DP=47;DPB=47;DPRA=0;EPP=14.8328;EPPR=68.1545;GTI=0;LEN=1;MEANALT=2;MQM=36.6667;MQMR=60;NS=3;NUMALT=4;ODDS=0;PAIRED=0.111111;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=276;QR=989;RO=30;RPL=1;RPP=14.8328;RPPR=68.1545;RPR=8;RUN=1;SAF=0;SAP=22.5536;SAR=9;SRF=0;SRP=68.1545;SRR=30;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|1:27:18,0,3,4,2:18:592:0,3,4,2:0,41,119,70:-3.17662,-8.59516,-56.5033,-6.65536,-54.5239,-53.6208,0,-47.9423,-45.9684,-46.7382,-2.86666,-50.8036,-48.8258,-42.2423,-50.2016 0|1:9:4,3,0,2,0:4:134:3,0,2,0:102,0,58,0:-7.11778,0,-9.99907,-8.3219,-10.9022,-19.1861,-4.2773,-6.85057,-15.1266,-14.5246,-8.3219,-10.9022,-19.1861,-15.1266,-19.1861 0|1:11:8,0,0,3,0:8:263:0,0,3,0:0,0,99,0:-5.64541,-8.05365,-29.3152,-8.05365,-29.3152,-29.3152,0,-21.5838,-21.5838,-20.6807,-8.05365,-29.3152,-29.3152,-21.5838,-29.3152 dDocent_Contig_14064 170 . A G 1649.9 . AB=0.710526;ABP=32.268;AC=3;AF=0.5;AN=6;AO=54;CIGAR=1X;DP=76;DPB=76;DPRA=0;EPP=120.27;EPPR=50.7827;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=2137;QR=888;RO=22;RPL=54;RPP=120.27;RPPR=50.7827;RPR=0;RUN=1;SAF=0;SAP=120.27;SAR=54;SRF=0;SRP=50.7827;SRR=22;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:59:13,46:13:525:46:1809:-145.263,0,-29.8354 0/1:12:8,4:8:325:4:164:-11.5375,0,-26.0073 0/1:5:1,4:1:38:4:164:-13.6447,0,-2.29212 dDocent_Contig_14065 107 . N A 55.1043 . AB=0;ABP=0;AC=2;AF=1;AN=2;AO=2;CIGAR=1X;DP=2;DPB=2;DPRA=0;EPP=7.35324;EPPR=0;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=0;NS=1;NUMALT=1;ODDS=5.99146;PAIRED=1;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=58;QR=0;RO=0;RPL=0;RPP=7.35324;RPPR=0;RPR=2;RUN=1;SAF=0;SAP=7.35324;SAR=2;SRF=0;SRP=0;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 1/1:2:0,2:0:0:2:58:-5.50935,-0.60206,0 ./.:.:.:.:.:.:.:. ./.:.:.:.:.:.:.:. dDocent_Contig_14066 16 . T G 220.992 . AB=0.244444;ABP=28.5372;AC=2;AF=0.333333;AN=6;AO=11;CIGAR=1X;DP=73;DPB=73;DPRA=0.803571;EPP=26.8965;EPPR=137.642;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=427;QR=2488;RO=62;RPL=0;RPP=26.8965;RPPR=137.642;RPR=11;RUN=1;SAF=11;SAP=26.8965;SAR=0;SRF=62;SRP=137.642;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:32:26,6:26:1058:6:232:-11.613,0,-85.8738 0/0:28:28,0:28:1105:0:0:0,-8.42884,-99.7345 0/1:13:8,5:8:325:5:195:-14.0091,0,-25.706 dDocent_Contig_14067 72 . C T 1188.25 . AB=0.373134;ABP=21.7433;AC=3;AF=0.5;AN=6;AO=50;CIGAR=1X;DP=134;DPB=134;DPRA=0;EPP=111.584;EPPR=185.414;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=1819;QR=3077;RO=84;RPL=50;RPP=111.584;RPPR=185.414;RPR=0;RUN=1;SAF=50;SAP=111.584;SAR=0;SRF=84;SRP=185.414;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:83:51,32:51:1896:32:1179:-81.4179,0,-145.906 0/1:28:20,8:20:737:8:294:-18.3814,0,-58.2272 0/1:23:13,10:13:444:10:346:-24.5491,0,-33.3598 dDocent_Contig_14068 84 . A T 185.844 . AB=0.285714;ABP=16.9698;AC=2;AF=0.333333;AN=6;AO=10;CIGAR=1X;DP=61;DPB=61;DPRA=0.673077;EPP=24.725;EPPR=113.755;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=355;QR=1756;RO=51;RPL=10;RPP=24.725;RPPR=113.755;RPR=0;RUN=1;SAF=10;SAP=24.725;SAR=0;SRF=51;SRP=113.755;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:26:26,0:26:889:0:0:0,-7.82678,-80.3237 0/1:9:3,6:3:104:6:216:-17.0812,0,-6.99375 0/1:26:22,4:22:763:4:139:-5.02591,0,-61.1643 dDocent_Contig_14070 30 . C T 225.618 . AB=0.183099;ABP=64.9431;AC=2;AF=0.333333;AN=6;AO=13;CIGAR=1X;DP=81;DPB=81;DPRA=3.55;EPP=31.2394;EPPR=150.67;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=518;QR=2677;RO=68;RPL=0;RPP=31.2394;RPPR=150.67;RPR=13;RUN=1;SAF=13;SAP=31.2394;SAR=0;SRF=68;SRP=150.67;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:30:27,3:27:1074:3:120:-2.157,0,-87.9215 0/0:10:10,0:10:379:0:0:0,-3.0103,-34.4539 0/1:41:31,10:31:1224:10:398:-23.837,0,-98.0949 dDocent_Contig_14071 11 . T C 332.445 . AB=0.25;ABP=35.5824;AC=2;AF=0.333333;AN=6;AO=15;CIGAR=1X;DP=72;DPB=72;DPRA=2.5;EPP=35.5824;EPPR=126.784;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=601;QR=2240;RO=57;RPL=0;RPP=35.5824;RPPR=126.784;RPR=15;RUN=1;SAF=15;SAP=35.5824;SAR=0;SRF=57;SRP=126.784;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:45:36,9:36:1416:9:360:-19.2165,0,-114.161 0/0:12:12,0:12:478:0:0:0,-3.61236,-43.3716 0/1:15:9,6:9:346:6:241:-17.5509,0,-26.9808 dDocent_Contig_14072 8 . C T 78.9872 . AB=0.126582;ABP=98.6925;AC=2;AF=0.333333;AN=6;AO=14;CIGAR=1X;DP=196;DPB=196;DPRA=0;EPP=33.4109;EPPR=398.218;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=533;QR=7003;RO=182;RPL=0;RPP=33.4109;RPPR=398.218;RPR=14;RUN=1;SAF=14;SAP=33.4109;SAR=0;SRF=182;SRP=398.218;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:117:113,4:113:4342:4:153:0,-21.0789,-376.701 0/1:36:30,6:30:1153:6:224:-9.68161,0,-93.2311 0/1:43:39,4:39:1508:4:156:-1.473,0,-123.047 dDocent_Contig_14074 28 . G T 100.149 . AB=0.333333;ABP=5.9056;AC=1;AF=0.166667;AN=6;AO=4;CIGAR=1X;DP=21;DPB=21;DPRA=2.66667;EPP=11.6962;EPPR=39.9253;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=0;PAIREDR=0.941176;PAO=0;PQA=0;PQR=0;PRO=0;QA=164;QR=674;RO=17;RPL=0;RPP=11.6962;RPPR=39.9253;RPR=4;RUN=1;SAF=4;SAP=11.6962;SAR=0;SRF=17;SRP=39.9253;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:12:8,4:8:325:4:164:-11.5375,0,-26.0073 0/0:6:6,0:6:226:0:0:0,-1.80618,-20.6977 0/0:3:3,0:3:123:0:0:0,-0.90309,-11.4648 dDocent_Contig_14075 54 . G A 555.21 . AB=0.285714;ABP=36.513;AC=3;AF=0.5;AN=6;AO=24;CIGAR=1X;DP=84;DPB=84;DPRA=0;EPP=55.1256;EPPR=133.299;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=947;QR=2400;RO=60;RPL=24;RPP=55.1256;RPPR=133.299;RPR=0;RUN=1;SAF=24;SAP=55.1256;SAR=0;SRF=60;SRP=133.299;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:54:40,14:40:1595:14:547:-33.3134,0,-127.529 0/1:5:3,2:3:119:2:81:-6.18058,0,-9.58986 0/1:25:17,8:17:686:8:319:-21.5499,0,-54.5419 dDocent_Contig_14076 13 . T G 256.668 . AB=0.375;ABP=4.09604;AC=4;AF=0.666667;AN=6;AO=3;CIGAR=1X2M1X;DP=29;DPB=29;DPRA=0;EPP=9.52472;EPPR=35.5824;GTI=0;LEN=1;MEANALT=3;MQM=60;MQMR=60;NS=3;NUMALT=3;ODDS=0;PAIRED=0;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=121;QR=600;RO=15;RPL=0;RPP=9.52472;RPPR=35.5824;RPR=3;RUN=1;SAF=3;SAP=9.52472;SAR=0;SRF=15;SRP=35.5824;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|1:12:9,1,2,0:9:361:1,2,0:40,74,0:-3.32308,-2.72731,-32.1958,0,-26.4502,-29.1431,-6.03235,-32.4968,-29.7451,-35.7923 1|1:8:0,4,0,3:0:0:4,0,3:157,0,121:-22.8757,-9.9693,-8.76518,-22.8757,-9.9693,-22.8757,-12.8987,0,-12.8987,-11.9956 0|1:9:6,0,2,0:6:239:0,2,0:0,80,0:-4.98369,-6.78987,-26.536,0,-19.9361,-19.334,-6.78987,-26.536,-19.9361,-26.536 dDocent_Contig_14077 76 . G T 130.289 . AB=0;ABP=0;AC=2;AF=0.333333;AN=6;AO=4;CIGAR=1X;DP=23;DPB=23;DPRA=0.421053;EPP=11.6962;EPPR=44.2683;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=139;QR=622;RO=19;RPL=4;RPP=11.6962;RPPR=44.2683;RPR=0;RUN=1;SAF=4;SAP=11.6962;SAR=0;SRF=19;SRP=44.2683;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:10:10,0:10:311:0:0:0,-3.0103,-28.2932 0/0:9:9,0:9:311:0:0:0,-2.70927,-28.3252 1/1:4:0,4:0:0:4:139:-12.8527,-1.20412,0 dDocent_Contig_14078 23 . A C 910.039 . AB=0.392857;ABP=11.386;AC=2;AF=0.333333;AN=6;AO=34;CIGAR=1X;DP=110;DPB=110;DPRA=0;EPP=76.8404;EPPR=168.042;GTI=0;LEN=1;MEANALT=1;MQM=59.8824;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=0.986842;PAO=0;PQA=0;PQR=0;PRO=0;QA=1365;QR=3004;RO=76;RPL=0;RPP=76.8404;RPPR=168.042;RPR=34;RUN=1;SAF=34;SAP=76.8404;SAR=0;SRF=76;SRP=168.042;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:61:32,29:32:1268:29:1167:-86.9458,0,-96.0258 0/1:23:19,4:19:746:4:157:-7.58095,0,-60.5384 0/0:26:25,1:25:990:1:41:0,-3.73221,-85.2997 dDocent_Contig_14079 115 . C T 56.5695 . AB=0.375;ABP=4.09604;AC=1;AF=0.166667;AN=6;AO=3;CIGAR=1X;DP=29;DPB=29;DPRA=0.761905;EPP=9.52472;EPPR=59.4686;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=106;QR=859;RO=26;RPL=0;RPP=9.52472;RPPR=59.4686;RPR=3;RUN=1;SAF=0;SAP=9.52472;SAR=3;SRF=0;SRP=59.4686;SRR=26;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:13:13,0:13:438:0:0:0,-3.91339,-39.7431 0/1:8:5,3:5:144:3:106:-7.48086,0,-10.8359 0/0:8:8,0:8:277:0:0:0,-2.40824,-25.267 dDocent_Contig_14080 44 . A G 51.9383 . AB=0.25;ABP=9.52472;AC=1;AF=0.166667;AN=6;AO=3;CIGAR=1X;DP=56;DPB=56;DPRA=0.545455;EPP=9.52472;EPPR=118.098;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=114;QR=2113;RO=53;RPL=0;RPP=9.52472;RPPR=118.098;RPR=3;RUN=1;SAF=3;SAP=9.52472;SAR=0;SRF=53;SRP=118.098;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:37:37,0:37:1483:0:0:0,-11.1381,-133.715 0/0:7:7,0:7:269:0:0:0,-2.10721,-24.5678 0/1:12:9,3:9:361:3:114:-7.01773,0,-29.2406 dDocent_Contig_14082 45 . C T 379.171 . AB=0.269841;ABP=31.9977;AC=2;AF=0.333333;AN=6;AO=17;CIGAR=1X;DP=101;DPB=101;DPRA=0.828947;EPP=39.9253;EPPR=185.414;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=0.705882;PAIREDR=0.809524;PAO=0;PQA=0;PQR=0;PRO=0;QA=655;QR=3351;RO=84;RPL=0;RPP=39.9253;RPPR=185.414;RPR=17;RUN=1;SAF=17;SAP=39.9253;SAR=0;SRF=84;SRP=185.414;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:54:38,16:38:1529:16:615:-39.4128,0,-121.593 0/0:38:38,0:38:1524:0:0:0,-11.4391,-137.404 0/1:9:8,1:8:298:1:40:-1.28641,0,-24.4609 dDocent_Contig_14083 44 . C T 226.134 . AB=0.22;ABP=37.059;AC=2;AF=0.333333;AN=6;AO=11;CIGAR=1X;DP=68;DPB=68;DPRA=1.38889;EPP=4.78696;EPPR=87.1644;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=0.272727;PAIREDR=0.894737;PAO=0;PQA=0;PQR=0;PRO=0;QA=449;QR=2298;RO=57;RPL=8;RPP=7.94546;RPPR=80.1547;RPR=3;RUN=1;SAF=7;SAP=4.78696;SAR=4;SRF=56;SRP=118.251;SRR=1;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:28:25,3:25:1007:3:123:-3.03595,0,-82.4952 0/1:22:14,8:14:558:8:326:-23.0872,0,-43.9391 0/0:18:18,0:18:733:0:0:0,-5.41854,-66.2935 dDocent_Contig_14084 17 . T A 1054.78 . AB=0.447059;ABP=5.07959;AC=3;AF=0.5;AN=6;AO=38;CIGAR=1X;DP=85;DPB=85;DPRA=0;EPP=85.5263;EPPR=105.07;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=1506;QR=1863;RO=47;RPL=0;RPP=85.5263;RPPR=105.07;RPR=38;RUN=1;SAF=38;SAP=85.5263;SAR=0;SRF=47;SRP=105.07;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:52:32,20:32:1257:20:797:-56.3949,0,-97.7397 0/1:10:6,4:6:242:4:164:-12.1396,0,-19.1472 0/1:23:9,14:9:364:14:545:-42.4662,0,-26.2005 dDocent_Contig_14085 26 . G T 111.514 . AB=0.144578;ABP=94.0813;AC=3;AF=0.5;AN=6;AO=12;CIGAR=2X1M1X;DP=83;DPB=83;DPRA=0;EPP=29.068;EPPR=155.013;GTI=0;LEN=1;MEANALT=1.33333;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=451;QR=2769;RO=70;RPL=0;RPP=29.068;RPPR=155.013;RPR=12;RUN=1;SAF=12;SAP=29.068;SAR=0;SRF=70;SRP=155.013;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|1:34:30,4:30:1201:4:149:-3.53421,0,-98.1339 0|1:30:25,4:25:979:4:144:-4.25432,0,-79.3676 0|1:19:15,4:15:589:4:158:-8.8807,0,-47.6262 dDocent_Contig_14086 15 . T C 193.868 . AB=0.0666667;ABP=51.9408;AC=1;AF=0.166667;AN=6;AO=2;CIGAR=2M3X6M1X3M2D1X4M1X4M;DP=39;DPB=38.8889;DPRA=0;EPP=7.35324;EPPR=55.1256;GTI=0;LEN=1;MEANALT=4;MQM=60;MQMR=60;NS=3;NUMALT=4;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=78;QR=921;RO=24;RPL=0;RPP=7.35324;RPPR=55.1256;RPR=2;RUN=1;SAF=2;SAP=7.35324;SAR=0;SRF=24;SRP=55.1256;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|0:30:18,7,2,2,1:18:699:7,2,2,1:266,80,78,40:-16.385,0,-55.3166,-15.2107,-50.8327,-72.0412,-15.3911,-51.0121,-66.2313,-72.2203,-18.5072,-54.1283,-69.3477,-69.5269,-75.6378 0|1:2:1,0,1,0,0:1:35:0,1,0,0:0,40,0,0:-3.39362,-3.69465,-6.51753,0,-3.1976,-2.89657,-3.69465,-6.51753,-3.1976,-6.51753,-3.69465,-6.51753,-3.1976,-6.51753,-6.51753 0|0:7:5,0,0,0,2:5:187:0,0,0,2:0,0,0,76:-5.10705,-6.6122,-21.9199,-6.6122,-21.9199,-21.9199,-6.6122,-21.9199,-21.9199,-21.9199,0,-15.6857,-15.6857,-15.6857,-15.0836 dDocent_Contig_14087 38 . C A 270.512 . AB=0.27907;ABP=21.2406;AC=2;AF=0.333333;AN=6;AO=13;CIGAR=1X;DP=58;DPB=58;DPRA=0;EPP=31.2394;EPPR=100.727;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=0;PAIREDR=0.533333;PAO=0;PQA=0;PQR=0;PRO=0;QA=513;QR=1754;RO=45;RPL=0;RPP=31.2394;RPPR=100.727;RPR=13;RUN=1;SAF=13;SAP=31.2394;SAR=0;SRF=45;SRP=100.727;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:40:29,11:29:1131:11:434:-27.3732,0,-90.0302 0/0:15:14,1:14:544:1:38:0,-0.718181,-45.499 0/1:3:2,1:2:79:1:41:-3.19148,0,-6.59415 dDocent_Contig_14088 8 . C T 968.963 . AB=0.117209;ABP=1371.2;AC=3;AF=0.5;AN=6;AO=126;CIGAR=1X;DP=1075;DPB=1075;DPRA=0;EPP=276.616;EPPR=2052.88;GTI=0;LEN=1;MEANALT=2;MQM=55.6587;MQMR=59.4576;NS=3;NUMALT=1;ODDS=0;PAIRED=0.68254;PAIREDR=0.716102;PAO=0;PQA=0;PQR=0;PRO=0;QA=4825;QR=36021;RO=944;RPL=0;RPP=276.616;RPPR=2052.88;RPR=126;RUN=1;SAF=126;SAP=276.616;SAR=0;SRF=944;SRP=2052.88;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:473:425,47:425:16216:47:1801:-19.4874,0,-1314.4 0/1:219:183,33:183:6964:33:1250:-43.3611,0,-561.067 0/1:383:336,46:336:12841:46:1774:-39.5708,0,-1038.96 dDocent_Contig_14090 10 . C A 1841.76 . AB=0.420382;ABP=11.6547;AC=3;AF=0.5;AN=6;AO=66;CIGAR=1X;DP=157;DPB=157;DPRA=0;EPP=146.327;EPPR=191.928;GTI=0;LEN=1;MEANALT=1.33333;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=0.701149;PAO=0;PQA=0;PQR=0;PRO=0;QA=2614;QR=3500;RO=87;RPL=0;RPP=146.327;RPPR=191.928;RPR=66;RUN=1;SAF=66;SAP=146.327;SAR=0;SRF=87;SRP=191.928;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:93:41,48:41:1662:48:1911:-144.994,0,-122.601 0/1:52:40,12:40:1594:12:483:-28.1671,0,-128.043 0/1:12:6,6:6:244:6:220:-16.5378,0,-18.7265 dDocent_Contig_14091 10 . C T 248.69 . AB=0.344828;ABP=9.07545;AC=2;AF=0.333333;AN=6;AO=11;CIGAR=1X;DP=42;DPB=42;DPRA=0;EPP=26.8965;EPPR=70.3259;GTI=0;LEN=1;MEANALT=1;MQM=59.9091;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=0;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=443;QR=1252;RO=31;RPL=0;RPP=26.8965;RPPR=70.3259;RPR=11;RUN=1;SAF=11;SAP=26.8965;SAR=0;SRF=31;SRP=70.3259;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:20:14,6:14:565:6:245:-16.4089,0,-45.1691 0/1:9:5,4:5:200:4:159:-11.9817,0,-15.6698 0/0:13:12,1:12:487:1:39:0,-0.0168255,-40.2845 dDocent_Contig_14092 15 . C T 576.91 . AB=0.212766;ABP=36.6912;AC=1;AF=0.166667;AN=6;AO=10;CIGAR=2X3M1X;DP=197;DPB=197;DPRA=0.364341;EPP=24.725;EPPR=330.903;GTI=0;LEN=1;MEANALT=4;MQM=34;MQMR=60;NS=3;NUMALT=3;ODDS=0;PAIRED=0;PAIREDR=0.84106;PAO=0;PQA=0;PQR=0;PRO=0;QA=390;QR=5707;RO=151;RPL=0;RPP=24.725;RPPR=330.903;RPR=10;RUN=1;SAF=10;SAP=24.725;SAR=0;SRF=151;SRP=330.903;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|0:47:12,9,10,14:12:468:9,10,14:281,390,545:-40.881,-23.6915,-59.4631,-18.0417,-35.7301,-53.5165,0,-17.6993,-12.0483,-34.2861 0|0:129:128,0,0,1:128:4805:0,0,1:0,0,35:0,-38.5318,-432.139,-38.5318,-432.139,-432.139,-35.3436,-429.3,-429.3,-428.999 0|1:21:11,9,0,1:11:434:9,0,1:317,0,40:-20.3329,0,-32.9961,-23.6442,-35.7054,-59.3839,-20.3681,-32.4361,-56.1132,-55.8122 dDocent_Contig_14094 29 . C T 52.4187 . AB=0.2;ABP=14.7363;AC=1;AF=0.166667;AN=6;AO=3;CIGAR=1X;DP=40;DPB=40;DPRA=1.2;EPP=9.52472;EPPR=83.3548;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=121;QR=1470;RO=37;RPL=0;RPP=9.52472;RPPR=83.3548;RPR=3;RUN=1;SAF=3;SAP=9.52472;SAR=0;SRF=37;SRP=83.3548;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:15:12,3:12:467:3:121:-6.76475,0,-37.8611 0/0:13:13,0:13:520:0:0:0,-3.91339,-47.1453 0/0:12:12,0:12:483:0:0:0,-3.61236,-43.8211 dDocent_Contig_14095 19 . A G 1414.17 . 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AB=0.344262;ABP=15.8611;AC=3;AF=0.5;AN=6;AO=21;CIGAR=1X1M;DP=61;DPB=61;DPRA=0;EPP=48.6112;EPPR=83.3548;GTI=0;LEN=1;MEANALT=1.66667;MQM=35.6667;MQMR=49.4595;NS=3;NUMALT=2;ODDS=0;PAIRED=0.761905;PAIREDR=0.837838;PAO=0;PQA=0;PQR=0;PRO=0;QA=645;QR=1479;RO=37;RPL=0;RPP=48.6112;RPPR=83.3548;RPR=21;RUN=1;SAF=0;SAP=48.6112;SAR=21;SRF=0;SRP=83.3548;SRR=37;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|1:19:13,0,6:13:522:0,6:0,109:-2.96472,-6.87811,-42.368,0,-35.704,-33.8978 0|1:29:20,0,8:20:794:0,8:0,251:-13.2546,-19.2752,-72.3347,0,-53.0416,-50.6334 0|1:13:4,2,7:4:163:2,7:64,285:-21.8267,-18.7655,-31.6143,0,-9.28921,-11.4301 dDocent_Contig_14099 80 . T C 95.9162 . AB=0.222222;ABP=21.1059;AC=1;AF=0.166667;AN=6;AO=6;CIGAR=1X;DP=46;DPB=46;DPRA=2.84211;EPP=16.0391;EPPR=89.8692;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=210;QR=1361;RO=40;RPL=6;RPP=16.0391;RPPR=89.8692;RPR=0;RUN=1;SAF=6;SAP=16.0391;SAR=0;SRF=40;SRP=89.8692;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:27:21,6:21:704:6:210:-11.1145,0,-55.5413 0/0:5:5,0:5:178:0:0:0,-1.50515,-16.3686 0/0:14:14,0:14:479:0:0:0,-4.21442,-43.4373 dDocent_Contig_14100 29 . C A 531.607 . AB=0.0869565;ABP=37.093;AC=3;AF=0.5;AN=6;AO=2;CIGAR=2X4M1I1M3X6M;DP=41;DPB=40.6875;DPRA=0;EPP=7.35324;EPPR=31.2394;GTI=0;LEN=1;MEANALT=5;MQM=60;MQMR=60;NS=3;NUMALT=4;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=80;QR=520;RO=13;RPL=0;RPP=7.35324;RPPR=31.2394;RPR=2;RUN=1;SAF=2;SAP=7.35324;SAR=0;SRF=13;SRP=31.2394;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|1:23:7,1,3,9,2:7:280:1,3,9,2:38,119,360,80:-27.5499,-26.5419,-49.3062,-19.8619,-39.8121,-42.0245,0,-19.9517,-13.2716,-20.3575,-23.0668,-43.0171,-36.3373,-16.4764,-45.5306 0|1:8:0,2,0,6,0:0:0:2,0,6,0:76,0,239,0:-26.3075,-20.0792,-19.4771,-26.3075,-20.0792,-26.3075,-6.61261,0,-6.61261,-4.80643,-26.3075,-20.0792,-26.3075,-6.61261,-26.3075 0|1:10:6,2,0,2,0:6:240:2,0,2,0:66,0,80,0:-4.81888,-1.32606,-20.4945,-6.62506,-21.0965,-26.4165,0,-14.5064,-19.8228,-19.2208,-6.62506,-21.0965,-26.4165,-19.8228,-26.4165 dDocent_Contig_14101 26 . A G 122.783 . 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A C 1125.69 . AB=0.0902256;ABP=196.99;AC=0;AF=0;AN=6;AO=12;CIGAR=7M1X1M1X3M;DP=133;DPB=135.231;DPRA=0;EPP=29.068;EPPR=107.241;GTI=0;LEN=1;MEANALT=4;MQM=60;MQMR=60;NS=3;NUMALT=3;ODDS=0;PAIRED=1;PAIREDR=0.979167;PAO=0;PQA=0;PQR=0;PRO=0;QA=480;QR=1892;RO=48;RPL=0;RPP=29.068;RPPR=107.241;RPR=12;RUN=1;SAF=12;SAP=29.068;SAR=0;SRF=48;SRP=107.241;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|0:65:30,10,5,15:30:1175:10,5,15:399,203,585:-39.0421,-15.2105,-108.816,-31.3287,-95.0828,-126.44,0,-63.751,-79.8692,-92.0975 0|0:18:4,6,2,6:4:159:6,2,6:242,76,237:-25.1589,-6.40938,-17.6964,-20.1332,-13.2727,-32.6219,-6.86314,0,-13.7252,-18.1481 0|0:50:14,12,5,19:14:558:12,5,19:477,201,710:-53.8909,-18.8293,-61.1763,-41.5389,-48.2225,-85.9909,0,-6.68296,-29.3878,-40.2327 dDocent_Contig_14106 87 . T C 47.0423 . 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AB=0.311111;ABP=30.9017;AC=3;AF=0.5;AN=6;AO=28;CIGAR=1X;DP=90;DPB=90;DPRA=0;EPP=63.8115;EPPR=137.642;GTI=0;LEN=1;MEANALT=1;MQM=57.1429;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=0;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=1082;QR=2351;RO=62;RPL=0;RPP=63.8115;RPPR=137.642;RPR=28;RUN=1;SAF=28;SAP=63.8115;SAR=0;SRF=62;SRP=137.642;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:45:30,15:30:1132:15:585:-39.4357,0,-88.6299 0/1:14:9,5:9:341:5:195:-13.5321,0,-26.8316 0/1:31:23,8:23:878:8:302:-18.1942,0,-70.0059 dDocent_Contig_14108 26 . G A 2174.78 . 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AB=0.428571;ABP=7.66346;AC=3;AF=0.5;AN=6;AO=45;CIGAR=1X1M;DP=105;DPB=105;DPRA=0;EPP=100.727;EPPR=128.956;GTI=0;LEN=1;MEANALT=1.33333;MQM=58.4;MQMR=58.9655;NS=3;NUMALT=2;ODDS=0;PAIRED=0.244444;PAIREDR=0.862069;PAO=0;PQA=0;PQR=0;PRO=0;QA=1702;QR=2244;RO=58;RPL=0;RPP=100.727;RPPR=128.956;RPR=45;RUN=1;SAF=45;SAP=100.727;SAR=0;SRF=58;SRP=128.956;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|1:62:34,0,28:34:1315:0,28:0,1067:-77.672,-87.907,-195.725,0,-108.201,-99.7717 0|1:12:5,0,7:5:193:0,7:0,252:-19.4129,-20.918,-36.7672,0,-16.2239,-14.1167 0|1:31:19,2,10:19:736:2,10:78,383:-25.1975,-24.5033,-84.348,0,-54.0259,-57.4276 dDocent_Contig_14110 155 . G C 105.516 . AB=0.2;ABP=30.3709;AC=3;AF=0.5;AN=6;AO=7;CIGAR=1X;DP=35;DPB=35;DPRA=0;EPP=18.2106;EPPR=63.8115;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=260;QR=1095;RO=28;RPL=0;RPP=18.2106;RPPR=63.8115;RPR=7;RUN=1;SAF=0;SAP=18.2106;SAR=7;SRF=0;SRP=63.8115;SRR=28;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:10:6,4:6:240:4:163:-12.0481,0,-18.9654 0/1:14:12,2:12:464:2:56:-1.10448,0,-37.8941 0/1:11:10,1:10:391:1:41:-0.783237,0,-32.2307 dDocent_Contig_14111 107 . N A 1248.79 . AB=0.7;ABP=9.95901;AC=6;AF=1;AN=6;AO=45;CIGAR=1X4M;DP=53;DPB=53;DPRA=0;EPP=100.727;EPPR=0;GTI=0;LEN=1;MEANALT=2.33333;MQM=60;MQMR=0;NS=3;NUMALT=2;ODDS=0;PAIRED=0.533333;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=1319;QR=0;RO=0;RPL=0;RPP=100.727;RPPR=0;RPR=45;RUN=1;SAF=0;SAP=100.727;SAR=45;SRF=0;SRP=0;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 1|1:18:0,1,16:0:0:1,16:34,458:-41.1657,-38.4049,-38.1038,-4.81648,-2.05849,0 1|1:15:0,0,15:0:0:0,15:0,427:-38.709,-38.709,-38.709,-4.51545,-4.51545,0 1|1:20:0,5,14:0:0:5,14:147,434:-46.5272,-34.8099,-33.3047,-11.6835,0,-7.46909 dDocent_Contig_14112 37 . G A 195.829 . AB=0.117117;ABP=285.693;AC=2;AF=0.333333;AN=6;AO=31;CIGAR=1X;DP=283;DPB=283;DPRA=0;EPP=18.771;EPPR=550.221;GTI=0;LEN=1;MEANALT=1;MQM=52.8387;MQMR=60;NS=3;NUMALT=1;ODDS=1.38778e-17;PAIRED=0.354839;PAIREDR=0.992063;PAO=0;PQA=0;PQR=0;PRO=0;QA=1222;QR=9984;RO=252;RPL=4;RPP=40.0654;RPPR=550.221;RPR=27;RUN=1;SAF=27;SAP=40.0654;SAR=4;SRF=252;SRP=550.221;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:154:135,19:135:5325:19:742:-18.6546,0,-432.748 0/0:61:56,5:56:2220:5:199:0,-1.38033,-182.996 0/1:68:61,7:61:2439:7:281:-4.45054,0,-199.189 dDocent_Contig_14113 64 . G A 75.2584 . AB=0.266667;ABP=10.1038;AC=1;AF=0.166667;AN=6;AO=4;CIGAR=1X;DP=63;DPB=63;DPRA=0.625;EPP=11.6962;EPPR=131.127;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=0.677966;PAO=0;PQA=0;PQR=0;PRO=0;QA=150;QR=2252;RO=59;RPL=2;RPP=3.0103;RPPR=7.46366;RPR=2;RUN=1;SAF=2;SAP=3.0103;SAR=2;SRF=35;SRP=7.46366;SRR=24;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:20:20,0:20:771:0:0:0,-6.0206,-69.7122 0/1:15:11,4:11:422:4:150:-9.34975,0,-33.8148 0/0:28:28,0:28:1059:0:0:0,-8.42884,-95.613 dDocent_Contig_14114 42 . C T 34.597 . AB=0.114286;ABP=48.239;AC=1;AF=0.166667;AN=6;AO=4;CIGAR=1M1X3M;DP=70;DPB=70.6;DPRA=1.2069;EPP=11.6962;EPPR=139.813;GTI=0;LEN=1;MEANALT=2;MQM=60;MQMR=60;NS=3;NUMALT=2;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=162;QR=2511;RO=63;RPL=0;RPP=11.6962;RPPR=139.813;RPR=4;RUN=1;SAF=4;SAP=11.6962;SAR=0;SRF=63;SRP=139.813;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|0:29:29,0,0:29:1153:0,0:0,0:0,-8.72987,-104.055,-8.72987,-104.055,-104.055 0|0:6:5,1,0:5:199:1,0:41,0:-2.28839,0,-16.4824,-3.79354,-16.7834,-20.1695 0|1:35:29,2,4:29:1159:2,4:82,162:-4.62495,-6.58501,-101.443,0,-88.6861,-94.2508 dDocent_Contig_14115 35 . G A 49.3504 . AB=0.105263;ABP=157.299;AC=3;AF=0.5;AN=6;AO=12;CIGAR=1X;DP=114;DPB=114;DPRA=0;EPP=29.068;EPPR=224.5;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=484;QR=4094;RO=102;RPL=0;RPP=29.068;RPPR=224.5;RPR=12;RUN=1;SAF=12;SAP=29.068;SAR=0;SRF=102;SRP=224.5;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:61:55,6:55:2224:6:240:-3.61232,0,-181.958 0/1:11:9,2:9:365:2:81:-4.3744,0,-29.9032 0/1:42:38,4:38:1505:4:163:-2.41517,0,-123.045 dDocent_Contig_14116 95 . A G 242.401 . AB=0.545455;ABP=3.20771;AC=3;AF=0.5;AN=6;AO=10;CIGAR=1X;DP=25;DPB=25;DPRA=0.75;EPP=24.725;EPPR=35.5824;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=316;QR=525;RO=15;RPL=10;RPP=24.725;RPPR=35.5824;RPR=0;RUN=1;SAF=10;SAP=24.725;SAR=0;SRF=15;SRP=35.5824;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:11:5,6:5:175:6:177:-12.9102,0,-12.782 1/1:4:0,4:0:0:4:139:-12.8527,-1.20412,0 0/0:10:10,0:10:350:0:0:0,-3.0103,-31.8365 dDocent_Contig_14117 112 . T A 113.091 . AB=0.217391;ABP=34.9215;AC=3;AF=0.5;AN=6;AO=10;CIGAR=1X;DP=46;DPB=46;DPRA=0;EPP=24.725;EPPR=81.1833;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=328;QR=1211;RO=36;RPL=0;RPP=24.725;RPPR=81.1833;RPR=10;RUN=1;SAF=0;SAP=24.725;SAR=10;SRF=0;SRP=81.1833;SRR=36;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:27:20,7:20:651:7:223:-12.2547,0,-50.7674 0/1:4:3,1:3:105:1:35:-2.29451,0,-8.59204 0/1:15:13,2:13:455:2:70:-2.13195,0,-36.7684 dDocent_Contig_14118 111 . A C 120.271 . AB=0.222222;ABP=9.04217;AC=3;AF=0.5;AN=6;AO=5;CIGAR=1X;DP=20;DPB=20;DPRA=0.75;EPP=13.8677;EPPR=35.5824;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=173;QR=516;RO=15;RPL=0;RPP=13.8677;RPPR=35.5824;RPR=5;RUN=1;SAF=0;SAP=13.8677;SAR=5;SRF=0;SRP=35.5824;SRR=15;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:8:8,0:8:275:0:0:0,-2.40824,-25.0848 1/1:3:0,3:0:0:3:103:-9.60997,-0.90309,0 0/1:9:7,2:7:241:2:70:-3.93813,0,-19.3172 dDocent_Contig_14120 25 . A T 256.673 . AB=0.333333;ABP=10.9724;AC=3;AF=0.5;AN=6;AO=11;CIGAR=1X;DP=33;DPB=33;DPRA=0;EPP=26.8965;EPPR=50.7827;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=0;PAIREDR=0.909091;PAO=0;PQA=0;PQR=0;PRO=0;QA=444;QR=893;RO=22;RPL=0;RPP=26.8965;RPPR=50.7827;RPR=11;RUN=1;SAF=11;SAP=26.8965;SAR=0;SRF=22;SRP=50.7827;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:11:6,5:6:245:5:201:-15.1596,0,-19.1181 0/1:9:5,4:5:203:4:163:-12.3492,0,-15.9438 0/1:13:11,2:11:445:2:80:-3.6784,0,-36.4923 dDocent_Contig_14121 10 . A T 373.599 . AB=0.508197;ABP=3.0459;AC=3;AF=0.5;AN=6;AO=31;CIGAR=1X2M1X;DP=61;DPB=61;DPRA=0;EPP=28.2974;EPPR=59.7581;GTI=0;LEN=1;MEANALT=1;MQM=21.871;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=0;PAIREDR=0.833333;PAO=0;PQA=0;PQR=0;PRO=0;QA=1193;QR=1166;RO=30;RPL=0;RPP=70.3259;RPPR=68.1545;RPR=31;RUN=1;SAF=25;SAP=28.2974;SAR=6;SRF=29;SRP=59.7581;SRR=1;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|1:32:14,18:14:556:18:698:-26.5143,0,-40.7519 0|1:8:5,3:5:188:3:114:-4.56028,0,-14.8748 0|1:21:11,10:11:422:10:381:-11.8078,0,-32.0107 dDocent_Contig_14123 31 . A C 51.5336 . AB=0.153846;ABP=16.5402;AC=3;AF=0.5;AN=6;AO=3;CIGAR=1X;DP=82;DPB=82;DPRA=0.102941;EPP=9.52472;EPPR=174.557;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=109;QR=3135;RO=79;RPL=0;RPP=9.52472;RPPR=174.557;RPR=3;RUN=1;SAF=3;SAP=9.52472;SAR=0;SRF=79;SRP=174.557;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:68:68,0:68:2690:0:0:0,-20.47,-242.224 1/1:1:0,1:0:0:1:41:-4.09457,-0.30103,0 0/1:13:11,2:11:445:2:68:-2.54124,0,-36.4923 dDocent_Contig_14124 85 . A G 202.327 . AB=0.27027;ABP=19.9713;AC=2;AF=0.333333;AN=6;AO=10;CIGAR=3M1X;DP=48;DPB=49.5;DPRA=0;EPP=24.725;EPPR=79.0118;GTI=0;LEN=1;MEANALT=1.5;MQM=60;MQMR=60;NS=3;NUMALT=2;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=377;QR=1324;RO=35;RPL=10;RPP=24.725;RPPR=79.0118;RPR=0;RUN=1;SAF=10;SAP=24.725;SAR=0;SRF=35;SRP=79.0118;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|1:20:15,2,3:15:575:2,3:73,117:-5.11709,-3.67805,-50.2642,0,-41.2475,-46.3067 0|1:17:10,0,7:10:380:0,7:0,260:-18.6356,-21.6459,-52.8142,0,-31.543,-29.4358 0|0:11:10,1,0:10:369:1,0:36,0:-0.286945,0,-30.2482,-3.29724,-30.5492,-33.4859 dDocent_Contig_14127 7 . A G 46.9461 . AB=0.666667;ABP=3.73412;AC=1;AF=0.166667;AN=6;AO=2;CIGAR=1X;DP=20;DPB=20;DPRA=0.352941;EPP=7.35324;EPPR=42.0968;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=0.944444;PAO=0;PQA=0;PQR=0;PRO=0;QA=78;QR=690;RO=18;RPL=0;RPP=7.35324;RPPR=42.0968;RPR=2;RUN=1;SAF=2;SAP=7.35324;SAR=0;SRF=18;SRP=42.0968;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:12:12,0:12:461:0:0:0,-3.61236,-41.8405 0/1:3:1,2:1:38:2:78:-6.50038,0,-2.89418 0/0:5:5,0:5:191:0:0:0,-1.50515,-17.5585 dDocent_Contig_14128 39 . C T 122.329 . AB=0.183673;ABP=45.5977;AC=2;AF=0.333333;AN=6;AO=9;CIGAR=1X;DP=56;DPB=56;DPRA=3.5;EPP=22.5536;EPPR=105.07;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=331;QR=1797;RO=47;RPL=0;RPP=22.5536;RPPR=105.07;RPR=9;RUN=1;SAF=9;SAP=22.5536;SAR=0;SRF=47;SRP=105.07;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:45:38,7:38:1455:7:256:-9.84022,0,-117.668 0/0:7:7,0:7:273:0:0:0,-2.10721,-24.9364 0/1:4:2,2:2:69:2:75:-5.91547,0,-5.3472 dDocent_Contig_14130 11 . C T 232.561 . AB=0.333333;ABP=9.52472;AC=2;AF=0.333334;AN=6;AO=9;CIGAR=1X1M;DP=83;DPB=83;DPRA=1.17391;EPP=22.5536;EPPR=155.013;GTI=0;LEN=1;MEANALT=2;MQM=60;MQMR=60;NS=3;NUMALT=2;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=366;QR=2838;RO=70;RPL=0;RPP=22.5536;RPPR=155.013;RPR=9;RUN=1;SAF=9;SAP=22.5536;SAR=0;SRF=70;SRP=155.013;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|1:33:30,3,0:30:1221:3,0:109,0:-0.229,0,-100.224,-9.2599,-101.127,-110.02 0|1:27:17,1,9:17:684:1,9:40,366:-25.0776,-26.9007,-82.9686,0,-53.079,-53.6647 0|0:23:23,0,0:23:933:0,0:0,0:0,-6.92369,-84.2721,-6.92369,-84.2721,-84.2721 dDocent_Contig_14131 111 . T A 812.45 . AB=0.1875;ABP=70.8688;AC=2;AF=0.333333;AN=6;AO=15;CIGAR=1X1M1X2M;DP=80;DPB=80.2;DPRA=0;EPP=35.5824;EPPR=59.4686;GTI=0;LEN=1;MEANALT=3.66667;MQM=60;MQMR=60;NS=3;NUMALT=4;ODDS=1.38778e-17;PAIRED=0;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=518;QR=873;RO=26;RPL=0;RPP=35.5824;RPPR=59.4686;RPR=15;RUN=1;SAF=0;SAP=35.5824;SAR=15;SRF=0;SRP=59.4686;SRR=26;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|1:25:15,6,0,2,2:15:513:6,0,2,2:210,0,68,70:-12.583,0,-39.8419,-17.0984,-41.6481,-58.737,-12.1302,-36.6753,-53.7636,-53.1615,-11.4009,-35.9514,-53.0409,-48.0676,-52.4388 0|0:39:3,4,11,17,3:3:104:4,11,17,3:135,351,570,104:-62.526,-52.4854,-59.7369,-35.1607,-32.6728,-40.3051,-19.8033,-17.3158,0,-23.1419,-54.9735,-52.4854,-35.1607,-19.8033,-62.526 0|1:16:8,5,0,1,2:8:256:5,0,1,2:173,0,34,69:-11.6589,0,-19.111,-14.0671,-20.6161,-34.6823,-11.5834,-18.1294,-32.1955,-31.8945,-8.46012,-15.0057,-29.0745,-26.5878,-28.4725 dDocent_Contig_14132 11 . C T 141.758 . AB=0.212121;ABP=26.7649;AC=1;AF=0.166667;AN=6;AO=8;CIGAR=1X;DP=121;DPB=121;DPRA=0.543103;EPP=20.3821;EPPR=246.215;GTI=0;LEN=1;MEANALT=1.5;MQM=60;MQMR=59.125;NS=3;NUMALT=1;ODDS=3.46945e-18;PAIRED=0;PAIREDR=0.276786;PAO=0;PQA=0;PQR=0;PRO=0;QA=323;QR=4507;RO=112;RPL=0;RPP=20.3821;RPPR=246.215;RPR=8;RUN=1;SAF=8;SAP=20.3821;SAR=0;SRF=112;SRP=246.215;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:58:58,0:58:2329:0:0:0,-17.4597,-208.487 0/1:33:25,7:25:1013:7:285:-15.9997,0,-81.439 0/0:30:29,1:29:1165:1:38:0,-5.23363,-99.7129 dDocent_Contig_14134 24 . C T 933.22 . AB=0.833333;ABP=37.7539;AC=3;AF=0.5;AN=6;AO=32;CIGAR=1X;DP=45;DPB=45;DPRA=2.71429;EPP=72.4974;EPPR=31.2394;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=1167;QR=523;RO=13;RPL=0;RPP=72.4974;RPPR=31.2394;RPR=32;RUN=1;SAF=32;SAP=72.4974;SAR=0;SRF=13;SRP=31.2394;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:36:6,30:6:246:30:1093:-87.8197,0,-11.683 0/0:7:7,0:7:277:0:0:0,-2.10721,-25.2981 1/1:2:0,2:0:0:2:74:-7.02486,-0.60206,0 dDocent_Contig_14136 15 . C T 191.045 . AB=0.363636;ABP=6.56362;AC=1;AF=0.166667;AN=6;AO=8;CIGAR=1X;DP=37;DPB=37;DPRA=2.93333;EPP=20.3821;EPPR=63.8115;GTI=0;LEN=1;MEANALT=2;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=300;QR=1113;RO=28;RPL=0;RPP=20.3821;RPPR=63.8115;RPR=8;RUN=1;SAF=8;SAP=20.3821;SAR=0;SRF=28;SRP=63.8115;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:22:13,8:13:530:8:300:-20.6273,0,-41.3157 0/0:4:4,0:4:141:0:0:0,-1.20412,-13.0333 0/0:11:11,0:11:442:0:0:0,-3.31133,-40.1349 dDocent_Contig_14137 56 . T A 71.639 . AB=0.428571;ABP=3.32051;AC=1;AF=0.166667;AN=6;AO=3;CIGAR=1X;DP=36;DPB=36;DPRA=0.482759;EPP=3.73412;EPPR=74.6689;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=0.333333;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=119;QR=1281;RO=33;RPL=3;RPP=9.52472;RPPR=74.6689;RPR=0;RUN=1;SAF=1;SAP=3.73412;SAR=2;SRF=33;SRP=74.6689;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:17:17,0:17:648:0:0:0,-5.11751,-58.6434 0/0:12:12,0:12:474:0:0:0,-3.61236,-43.0097 0/1:7:4,3:4:159:3:119:-8.9878,0,-12.5847 dDocent_Contig_14138 9 . C A 1285.28 . 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T G 1323.67 . AB=0.213058;ABP=211.121;AC=3;AF=0.5;AN=6;AO=62;CIGAR=1X;DP=291;DPB=291;DPRA=0;EPP=137.642;EPPR=489.42;GTI=0;LEN=1;MEANALT=1.66667;MQM=60;MQMR=59.9375;NS=3;NUMALT=1;ODDS=0;PAIRED=0.983871;PAIREDR=0.8125;PAO=0;PQA=0;PQR=0;PRO=0;QA=2487;QR=8892;RO=224;RPL=0;RPP=137.642;RPPR=489.42;RPR=62;RUN=1;SAF=62;SAP=137.642;SAR=0;SRF=224;SRP=489.42;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:162:117,41:117:4659:41:1644:-100.242,0,-371.282 0/1:59:52,6:52:2031:6:245:-4.56051,0,-165.074 0/1:70:55,15:55:2202:15:598:-33.0862,0,-177.282 dDocent_Contig_14140 11 . A G 452.55 . AB=0.517241;ABP=3.08518;AC=1;AF=0.166667;AN=6;AO=16;CIGAR=1X;DP=46;DPB=46;DPRA=11;EPP=37.7539;EPPR=68.1545;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=654;QR=1173;RO=30;RPL=0;RPP=37.7539;RPPR=68.1545;RPR=16;RUN=1;SAF=16;SAP=37.7539;SAR=0;SRF=30;SRP=68.1545;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:29:14,15:14:545:15:613:-46.7769,0,-40.6563 0/0:2:2,0:2:81:0:0:0,-0.60206,-7.68573 0/0:15:14,1:14:547:1:41:0,-0.420883,-45.4661 dDocent_Contig_14141 55 . C T 205.429 . AB=0.136364;ABP=28.2783;AC=1;AF=0.166667;AN=6;AO=3;CIGAR=1X3M1X1M;DP=38;DPB=38;DPRA=0;EPP=9.52472;EPPR=57.2971;GTI=0;LEN=1;MEANALT=1.5;MQM=60;MQMR=60;NS=3;NUMALT=3;ODDS=0;PAIRED=0.666667;PAIREDR=0.92;PAO=0;PQA=0;PQR=0;PRO=0;QA=120;QR=985;RO=25;RPL=3;RPP=9.52472;RPPR=57.2971;RPR=0;RUN=1;SAF=3;SAP=9.52472;SAR=0;SRF=25;SRP=57.2971;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|0:16:8,0,2,6:8:313:0,2,6:0,79,242:-17.5464,-19.9547,-45.6847,-13.4562,-39.1843,-38.5823,0,-25.732,-19.2307,-23.9259 0|0:17:14,1,0,2:14:552:1,0,2:40,0,80:-2.37553,-3.29487,-48.4051,-6.58995,-48.7061,-52.0015,0,-42.1155,-45.4109,-44.8089 0|1:5:3,2,0,0:3:120:2,0,0:80,0,0:-6.08664,0,-9.68275,-6.98973,-10.2848,-16.875,-6.98973,-10.2848,-16.875,-16.875 dDocent_Contig_14142 26 . A T 763.125 . AB=0.363636;ABP=15.4469;AC=2;AF=0.333333;AN=6;AO=28;CIGAR=1X;DP=79;DPB=79;DPRA=19.25;EPP=63.8115;EPPR=113.755;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=1137;QR=2063;RO=51;RPL=0;RPP=63.8115;RPPR=113.755;RPR=28;RUN=1;SAF=28;SAP=63.8115;SAR=0;SRF=51;SRP=113.755;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:45:34,11:34:1375:11:449:-27.2195,0,-110.458 0/0:2:2,0:2:82:0:0:0,-0.60206,-7.77968 0/1:32:15,17:15:606:17:688:-52.6155,0,-45.2446 dDocent_Contig_14143 12 . G C 2299.67 . AB=0.654867;ABP=26.5506;AC=2;AF=0.333333;AN=6;AO=74;CIGAR=1X;DP=118;DPB=118;DPRA=11.3;EPP=163.699;EPPR=98.5551;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=2954;QR=1781;RO=44;RPL=0;RPP=163.699;RPPR=98.5551;RPR=74;RUN=1;SAF=74;SAP=163.699;SAR=0;SRF=44;SRP=98.5551;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:90:37,53:37:1497:53:2112:-163.167,0,-107.877 0/0:5:5,0:5:202:0:0:0,-1.50515,-18.5615 0/1:23:2,21:2:82:21:842:-69.169,0,-0.855988 dDocent_Contig_14144 17 . C G 70.1365 . AB=0.151515;ABP=37.8197;AC=1;AF=0.166667;AN=6;AO=5;CIGAR=1X;DP=63;DPB=63;DPRA=2.2;EPP=13.8677;EPPR=128.956;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=1.73472e-18;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=201;QR=2346;RO=58;RPL=0;RPP=13.8677;RPPR=128.956;RPR=5;RUN=1;SAF=5;SAP=13.8677;SAR=0;SRF=58;SRP=128.956;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:33:28,5:28:1135:5:201:-8.53653,0,-92.4942 0/0:18:18,0:18:720:0:0:0,-5.41854,-65.126 0/0:12:12,0:12:491:0:0:0,-3.61236,-44.541 dDocent_Contig_14145 15 . A T 1145.49 . AB=0.382716;ABP=12.6881;AC=1;AF=0.166667;AN=6;AO=31;CIGAR=1X2M1X;DP=102;DPB=102;DPRA=0;EPP=70.3259;EPPR=85.5263;GTI=0;LEN=1;MEANALT=2;MQM=60;MQMR=60;NS=3;NUMALT=2;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=1195;QR=1440;RO=38;RPL=0;RPP=70.3259;RPPR=85.5263;RPR=31;RUN=1;SAF=31;SAP=70.3259;SAR=0;SRF=38;SRP=85.5263;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|1:81:28,31,22:28:1066:31,22:1195,844:-89.6979,0,-78.1015,-28.852,-18.1567,-109.662 0|0:8:3,0,5:3:115:0,5:0,169:-13.1293,-14.0323,-23.4882,0,-9.82194,-8.31679 0|0:13:7,0,6:7:259:0,6:0,231:-17.2443,-19.3515,-40.5316,0,-21.5579,-19.7517 dDocent_Contig_14146 18 . G C 599.01 . AB=0.202899;ABP=108.815;AC=1;AF=0.166667;AN=6;AO=39;CIGAR=1X;DP=300;DPB=300;DPRA=0;EPP=87.6977;EPPR=561.079;GTI=0;LEN=1;MEANALT=1.66667;MQM=60;MQMR=56.2257;NS=3;NUMALT=1;ODDS=0;PAIRED=0;PAIREDR=0.190661;PAO=0;PQA=0;PQR=0;PRO=0;QA=1576;QR=10230;RO=257;RPL=0;RPP=87.6977;RPPR=561.079;RPR=39;RUN=1;SAF=39;SAP=87.6977;SAR=0;SRF=257;SRP=561.079;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:138:110,28:110:4384:28:1141:-61.4239,0,-343.037 0/0:77:70,5:70:2755:5:197:0,-4.87225,-215.912 0/0:85:77,6:77:3091:6:238:0,-3.59614,-250.706 dDocent_Contig_14147 25 . T A 917.114 . AB=0.508197;ABP=3.0459;AC=1;AF=0.166667;AN=6;AO=31;CIGAR=1X;DP=99;DPB=99;DPRA=3.21053;EPP=70.3259;EPPR=150.67;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=3.46945e-18;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=1237;QR=2723;RO=68;RPL=0;RPP=70.3259;RPPR=150.67;RPR=31;RUN=1;SAF=31;SAP=70.3259;SAR=0;SRF=68;SRP=150.67;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:61:30,31:30:1204:31:1237:-93.2343,0,-90.2703 0/0:13:13,0:13:531:0:0:0,-3.91339,-48.1364 0/0:25:25,0:25:988:0:0:0,-7.52575,-89.2178 dDocent_Contig_14149 106 . N A 225.858 . AB=0;ABP=0;AC=4;AF=1;AN=4;AO=7;CIGAR=2X;DP=7;DPB=7;DPRA=0;EPP=18.2106;EPPR=0;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=0;NS=2;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=240;QR=0;RO=0;RPL=0;RPP=18.2106;RPPR=0;RPR=7;RUN=1;SAF=0;SAP=18.2106;SAR=7;SRF=0;SRP=0;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL .:.:.:.:.:.:.:. 1|1:6:0,6:0:0:6:205:-18.785,-1.80618,0 1|1:1:0,1:0:0:1:35:-3.49863,-0.30103,0 dDocent_Contig_14150 30 . G T 83.5315 . AB=0.266667;ABP=10.1038;AC=1;AF=0.166667;AN=6;AO=4;CIGAR=1M1I1M1X2M1X2M5X;DP=60;DPB=60.3077;DPRA=0.666667;EPP=11.6962;EPPR=124.613;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=159;QR=2196;RO=56;RPL=0;RPP=11.6962;RPPR=124.613;RPR=4;RUN=1;SAF=4;SAP=11.6962;SAR=0;SRF=56;SRP=124.613;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|0:42:42,0:42:1637:0:0:0,-12.6433,-147.577 0|0:3:3,0:3:119:0:0:0,-0.90309,-11.0954 0|1:15:11,4:11:440:4:159:-10.1769,0,-35.4411 dDocent_Contig_14152 54 . G T 92.803 . AB=0.133333;ABP=20.5268;AC=0;AF=0;AN=6;AO=4;CIGAR=6M2X;DP=54;DPB=53.375;DPRA=6.25;EPP=11.6962;EPPR=98.5551;GTI=0;LEN=1;MEANALT=2;MQM=60;MQMR=60;NS=3;NUMALT=2;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=140;QR=1480;RO=44;RPL=4;RPP=11.6962;RPPR=98.5551;RPR=0;RUN=1;SAF=4;SAP=11.6962;SAR=0;SRF=44;SRP=98.5551;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|0:35:32,0,2:32:1078:0,2:0,71:0,-9.63296,-97.0586,-3.65124,-91.2719,-90.6699 0|0:4:4,0,0:4:134:0,0:0,0:0,-1.20412,-12.3903,-1.20412,-12.3903,-12.3903 0|0:15:8,5,2:8:268:5,2:167,69:-11.104,0,-20.1909,-7.9034,-16.0884,-29.006 dDocent_Contig_14153 13 . A C 336.58 . AB=0.119266;ABP=277.492;AC=3;AF=0.5;AN=6;AO=26;CIGAR=1X3M;DP=218;DPB=218;DPRA=0;EPP=59.4686;EPPR=334.851;GTI=0;LEN=1;MEANALT=2.66667;MQM=60;MQMR=59.8977;NS=3;NUMALT=2;ODDS=0;PAIRED=0.615385;PAIREDR=0.681818;PAO=0;PQA=0;PQR=0;PRO=0;QA=1038;QR=7005;RO=176;RPL=0;RPP=59.4686;RPPR=385.189;RPR=26;RUN=1;SAF=26;SAP=59.4686;SAR=0;SRF=170;SRP=334.851;SRR=6;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|1:89:71,9,7:71:2844:9,7:366,285:-8.74616,0,-231.645,-6.58669,-210.843,-238.823 0|1:79:63,3,13:63:2485:3,13:110,509:-22.9503,-34.5185,-238.066,0,-197.122,-200.617 0|1:50:42,1,6:42:1676:1,6:41,244:-7.48446,-16.7431,-154.423,0,-134.597,-136.175 dDocent_Contig_14154 9 . C A 89.2869 . AB=0.227273;ABP=17.2236;AC=1;AF=0.166667;AN=6;AO=5;CIGAR=1X;DP=98;DPB=98;DPRA=0.578947;EPP=13.8677;EPPR=196.365;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=59.2688;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=0.817204;PAO=0;PQA=0;PQR=0;PRO=0;QA=189;QR=3551;RO=93;RPL=0;RPP=13.8677;RPPR=204.957;RPR=5;RUN=1;SAF=5;SAP=13.8677;SAR=0;SRF=92;SRP=196.365;SRR=1;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:38:38,0:38:1461:0:0:0,-11.4391,-131.766 0/1:22:17,5:17:648:5:189:-10.7526,0,-49.7307 0/0:38:38,0:38:1442:0:0:0,-11.4391,-130.058 dDocent_Contig_14155 14 . A G 185.499 . AB=0.346154;ABP=8.35546;AC=3;AF=0.5;AN=6;AO=9;CIGAR=1X;DP=26;DPB=26;DPRA=0;EPP=22.5536;EPPR=39.9253;GTI=0;LEN=1;MEANALT=1;MQM=42;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=0;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=359;QR=681;RO=17;RPL=0;RPP=22.5536;RPPR=39.9253;RPR=9;RUN=1;SAF=9;SAP=22.5536;SAR=0;SRF=17;SRP=39.9253;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:16:9,7:9:361:7:279:-19.3412,0,-28.0376 0/1:4:3,1:3:120:1:40:-2.58345,0,-9.98378 0/1:6:5,1:5:200:1:40:-1.98139,0,-16.5729 dDocent_Contig_14158 84 . C T 682.024 . AB=0.467742;ABP=3.57068;AC=2;AF=0.333333;AN=6;AO=29;CIGAR=1X;DP=63;DPB=63;DPRA=31;EPP=65.983;EPPR=76.8404;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=997;QR=1145;RO=34;RPL=29;RPP=65.983;RPPR=76.8404;RPR=0;RUN=1;SAF=29;SAP=65.983;SAR=0;SRF=34;SRP=76.8404;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:51:27,24:27:901:24:822:-58.9422,0,-66.0419 0/0:1:1,0:1:35:0:0:0,-0.30103,-3.49863 0/1:11:6,5:6:209:5:175:-12.7824,0,-15.8397 dDocent_Contig_14159 14 . A T 1010.86 . AB=0.0952381;ABP=152.428;AC=0;AF=0;AN=6;AO=10;CIGAR=1X2M1X1M1X4M;DP=105;DPB=105;DPRA=0;EPP=24.725;EPPR=57.2971;GTI=0;LEN=1;MEANALT=4.33333;MQM=31.5;MQMR=60;NS=3;NUMALT=5;ODDS=2.77556e-17;PAIRED=0.4;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=270;QR=981;RO=25;RPL=0;RPP=24.725;RPPR=57.2971;RPR=10;RUN=1;SAF=10;SAP=24.725;SAR=0;SRF=25;SRP=57.2971;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|0:68:15,4,4,4,33,6:15:595:4,4,4,33,6:154,157,156,868,232:-60.6872,-52.5516,-100.351,-55.8935,-92.2473,-103.691,-52.6862,-89.0412,-92.3817,-100.486,0,-36.3464,-39.6927,-36.4811,-39.0569,-46.1397,-82.4963,-85.8371,-82.6308,-29.9381,-93.339 0|0:14:2,0,0,3,9,0:2:71:0,0,3,9,0:0,0,57,363,0:-29.5021,-30.1042,-35.8895,-30.1042,-35.8895,-35.8895,-26.7433,-32.5181,-32.5181,-31.615,0,-5.86139,-5.86139,-2.55661,-3.15212,-30.1042,-35.8895,-35.8895,-32.5181,-5.86139,-35.8895 0|0:23:8,3,2,3,7,0:8:315:3,2,3,7,0:117,79,57,235,0:-16.4095,-9.18226,-34.2309,-12.3068,-28.6285,-37.6523,-15.4356,-31.7437,-34.8626,-40.4613,0,-16.3316,-19.4528,-22.5805,-23.8512,-18.8178,-35.134,-38.2544,-41.3644,-25.9585,-44.7584 dDocent_Contig_14161 84 . G T 394.602 . AB=0.357143;ABP=12.937;AC=3;AF=0.5;AN=6;AO=20;CIGAR=1X;DP=56;DPB=56;DPRA=0;EPP=46.4397;EPPR=81.1833;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=676;QR=1261;RO=36;RPL=20;RPP=46.4397;RPPR=81.1833;RPR=0;RUN=1;SAF=20;SAP=46.4397;SAR=0;SRF=36;SRP=81.1833;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:27:19,8:19:678:8:287:-18.0487,0,-53.2212 0/1:10:7,3:7:247:3:106:-6.8788,0,-19.5631 0/1:19:10,9:10:336:9:283:-20.0556,0,-24.8462 dDocent_Contig_14162 13 . C T 189.661 . AB=0.363636;ABP=6.56362;AC=2;AF=0.333333;AN=6;AO=8;CIGAR=1M13I1M2X;DP=37;DPB=63;DPRA=0.733333;EPP=20.3821;EPPR=65.983;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=1.73472e-18;PAIRED=1;PAIREDR=0.965517;PAO=0;PQA=0;PQR=0;PRO=0;QA=315;QR=1148;RO=29;RPL=0;RPP=20.3821;RPPR=65.983;RPR=8;RUN=1;SAF=8;SAP=20.3821;SAR=0;SRF=29;SRP=65.983;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|0:15:15,0:15:593:0:0:0,-4.51545,-53.708 0|1:13:11,2:11:439:2:78:-3.48991,0,-35.9506 0|1:9:3,6:3:116:6:237:-18.9944,0,-8.10701 dDocent_Contig_14164 122 . G A 89.6885 . AB=0.277778;ABP=10.7311;AC=1;AF=0.166667;AN=6;AO=5;CIGAR=1X;DP=30;DPB=30;DPRA=3;EPP=13.8677;EPPR=57.2971;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=1.73472e-18;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=173;QR=867;RO=25;RPL=0;RPP=13.8677;RPPR=57.2971;RPR=5;RUN=1;SAF=0;SAP=13.8677;SAR=5;SRF=0;SRP=57.2971;SRR=25;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:18:13,5:13:454:5:173:-10.4917,0,-35.7748 0/0:7:7,0:7:239:0:0:0,-2.10721,-21.8436 0/0:5:5,0:5:174:0:0:0,-1.50515,-16.002 dDocent_Contig_14166 20 . A G 169.936 . AB=0.461538;ABP=3.17734;AC=1;AF=0.166667;AN=6;AO=6;CIGAR=1X;DP=21;DPB=21;DPRA=3.25;EPP=16.0391;EPPR=35.5824;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=0;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=245;QR=607;RO=15;RPL=0;RPP=16.0391;RPPR=35.5824;RPR=6;RUN=1;SAF=6;SAP=16.0391;SAR=0;SRF=15;SRP=35.5824;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:13:7,6:7:282:6:245:-18.5161,0,-21.8398 0/0:6:6,0:6:243:0:0:0,-1.80618,-22.2476 0/0:2:2,0:2:82:0:0:0,-0.60206,-7.77968 dDocent_Contig_14167 18 . G C 1237.17 . AB=0.283333;ABP=76.4061;AC=3;AF=0.5;AN=6;AO=51;CIGAR=1X;DP=180;DPB=180;DPRA=0;EPP=113.755;EPPR=283.13;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=0.992248;PAO=0;PQA=0;PQR=0;PRO=0;QA=2027;QR=5130;RO=129;RPL=0;RPP=113.755;RPPR=283.13;RPR=51;RUN=1;SAF=51;SAP=113.755;SAR=0;SRF=129;SRP=283.13;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:85:62,23:62:2466:23:918:-57.3385,0,-196.49 0/1:15:12,3:12:477:3:123:-6.94934,0,-38.7636 0/1:80:55,25:55:2187:25:986:-64.9519,0,-172.921 dDocent_Contig_14170 71 . A C 100.606 . AB=0.181818;ABP=32.0291;AC=1;AF=0.166667;AN=6;AO=9;CIGAR=1X;DP=81;DPB=81;DPRA=0;EPP=22.5536;EPPR=159.356;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=355;QR=2821;RO=72;RPL=9;RPP=22.5536;RPPR=159.356;RPR=0;RUN=1;SAF=9;SAP=22.5536;SAR=0;SRF=72;SRP=159.356;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:33:27,6:27:1069:6:235:-11.5833,0,-86.5686 0/0:20:19,1:19:744:1:40:0,-2.02492,-63.2869 0/0:28:26,2:26:1008:2:80:0,-0.837049,-83.4114 dDocent_Contig_14171 46 . G A 674.41 . AB=0.145299;ABP=130.867;AC=3;AF=0.5;AN=6;AO=17;CIGAR=1X1M;DP=117;DPB=117;DPRA=0;EPP=39.9253;EPPR=176.728;GTI=0;LEN=1;MEANALT=2.33333;MQM=60;MQMR=60;NS=3;NUMALT=2;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=674;QR=3127;RO=80;RPL=0;RPP=39.9253;RPPR=176.728;RPR=17;RUN=1;SAF=17;SAP=39.9253;SAR=0;SRF=80;SRP=176.728;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|1:77:54,17,5:54:2123:17,5:686,200:-40.2992,0,-169.502,-40.0801,-158.144,-213.191 0|1:9:7,1,1:7:264:1,1:41,33:-1.31664,0,-21.3734,-0.795432,-19.0121,-22.0992 0|1:31:19,1,11:19:740:1,11:38,441:-30.6312,-33.236,-93.7402,0,-57.7053,-57.51 dDocent_Contig_14172 14 . A G 335.73 . AB=0.228571;ABP=25.4075;AC=5;AF=0.833334;AN=6;AO=8;CIGAR=1M1X;DP=35;DPB=35;DPRA=0;EPP=20.3821;EPPR=24.725;GTI=0;LEN=1;MEANALT=3;MQM=58.75;MQMR=60;NS=3;NUMALT=4;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=323;QR=401;RO=10;RPL=0;RPP=20.3821;RPPR=24.725;RPR=8;RUN=1;SAF=8;SAP=20.3821;SAR=0;SRF=10;SRP=24.725;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|1:9:5,0,2,1,1:5:202:0,2,1,1:0,81,40,40:-5.14128,-6.64643,-23.3012,0,-16.6562,-16.0542,-3.35186,-20.0065,-13.3616,-19.7054,-3.35186,-20.0065,-13.3616,-16.7119,-19.7054 1|1:8:0,3,3,0,2:0:0:3,3,0,2:121,106,0,81:-18.473,-8.5729,-7.66981,-9.88767,0,-8.98458,-18.473,-8.5729,-9.88767,-18.473,-11.8056,-1.89184,-3.22566,-11.8056,-11.2035 1|1:18:5,0,5,3,5:5:199:0,5,3,5:0,202,121,202:-15.3355,-16.8406,-33.224,-0.272396,-16.655,-15.1499,-6.88569,-23.2688,-6.69965,-22.3657,-0.186556,-16.5696,0,-6.61405,-15.0645 dDocent_Contig_14173 107 . N A 333.155 . AB=0;ABP=0;AC=4;AF=1;AN=4;AO=10;CIGAR=1X;DP=10;DPB=10;DPRA=0;EPP=24.725;EPPR=0;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=0;NS=2;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=359;QR=0;RO=0;RPL=0;RPP=24.725;RPPR=0;RPR=10;RUN=1;SAF=0;SAP=24.725;SAR=10;SRF=0;SRP=0;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 1/1:9:0,9:0:0:9:323:-29.4151,-2.70927,0 ./.:.:.:.:.:.:.:. 1/1:1:0,1:0:0:1:36:-3.59827,-0.30103,0 dDocent_Contig_14174 39 . G T 393.675 . AB=0.347826;ABP=12.2627;AC=3;AF=0.5;AN=6;AO=16;CIGAR=1X2M5I2M;DP=46;DPB=68;DPRA=0;EPP=37.7539;EPPR=52.9542;GTI=0;LEN=1;MEANALT=2.33333;MQM=60;MQMR=60;NS=3;NUMALT=2;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=629;QR=873;RO=23;RPL=0;RPP=37.7539;RPPR=52.9542;RPR=16;RUN=1;SAF=16;SAP=37.7539;SAR=0;SRF=23;SRP=52.9542;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|1:28:11,12,4:11:432:12,4:471,149:-35.4797,0,-31.9716,-26.5939,-23.3864,-60.9319 0|1:7:4,2,1:4:157:2,1:79,38:-5.30676,0,-12.3204,-3.39933,-9.80844,-16.0092 0|1:11:8,2,1:8:284:2,1:79,38:-4.10264,0,-22.506,-3.39933,-19.9888,-26.1967 dDocent_Contig_14175 36 . T C 321.878 . AB=0.428571;ABP=4.25114;AC=2;AF=0.5;AN=4;AO=12;CIGAR=1X;DP=28;DPB=28;DPRA=0;EPP=29.068;EPPR=37.7539;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=2;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=484;QR=537;RO=16;RPL=0;RPP=29.068;RPPR=37.7539;RPR=12;RUN=1;SAF=12;SAP=29.068;SAR=0;SRF=16;SRP=37.7539;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:17:8,9:8:250:9:362:-27.8256,0,-17.6888 ./.:.:.:.:.:.:.:. 0/1:11:8,3:8:287:3:122:-8.06116,0,-22.8632 dDocent_Contig_14176 22 . G A 209.092 . AB=0.1625;ABP=82.1605;AC=1;AF=0.166667;AN=6;AO=14;CIGAR=1X;DP=144;DPB=144;DPRA=1.1;EPP=33.4109;EPPR=285.302;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=551;QR=5237;RO=130;RPL=0;RPP=33.4109;RPPR=285.302;RPR=14;RUN=1;SAF=14;SAP=33.4109;SAR=0;SRF=130;SRP=285.302;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:80:67,13:67:2704:13:513:-22.4321,0,-219.387 0/0:19:18,1:18:733:1:38:0,-1.9223,-62.4964 0/0:45:45,0:45:1800:0:0:0,-13.5463,-162.209 dDocent_Contig_14177 107 . N G 295.173 . AB=0;ABP=0;AC=6;AF=1;AN=6;AO=16;CIGAR=1X;DP=16;DPB=16;DPRA=0;EPP=37.7539;EPPR=0;GTI=0;LEN=1;MEANALT=1;MQM=27.0625;MQMR=0;NS=3;NUMALT=1;ODDS=0;PAIRED=0.3125;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=522;QR=0;RO=0;RPL=0;RPP=37.7539;RPPR=0;RPR=16;RUN=1;SAF=0;SAP=37.7539;SAR=16;SRF=0;SRP=0;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 1/1:5:0,5:0:0:5:173:-6.42306,-1.50515,0 1/1:7:0,7:0:0:7:231:-17.5356,-2.10721,0 1/1:4:0,4:0:0:4:118:-4.9565,-1.20412,0 dDocent_Contig_14178 21 . T C 86.3896 . AB=0.16;ABP=53.2147;AC=3;AF=0.5;AN=6;AO=8;CIGAR=1X;DP=50;DPB=50;DPRA=0;EPP=20.3821;EPPR=94.2121;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=304;QR=1698;RO=42;RPL=0;RPP=20.3821;RPPR=94.2121;RPR=8;RUN=1;SAF=8;SAP=20.3821;SAR=0;SRF=42;SRP=94.2121;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:16:13,3:13:524:3:122:-6.55601,0,-42.6876 0/1:7:5,2:5:199:2:81:-5.57852,0,-16.1795 0/1:27:24,3:24:975:3:101:-1.28868,0,-79.919 dDocent_Contig_14179 27 . G A 372.324 . AB=0.0714286;ABP=70.0157;AC=0;AF=0;AN=6;AO=3;CIGAR=1X2M1X3M1X5M4X6M;DP=48;DPB=37.5652;DPRA=3.5;EPP=9.52472;EPPR=52.9542;GTI=0;LEN=1;MEANALT=3;MQM=9.66667;MQMR=60;NS=3;NUMALT=5;ODDS=0;PAIRED=0;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=29;QR=896;RO=23;RPL=0;RPP=9.52472;RPPR=52.9542;RPR=3;RUN=1;SAF=3;SAP=9.52472;SAR=0;SRF=23;SRP=52.9542;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|0:25:10,4,1,0,8,2:10:383:4,1,0,8,2:52,13,0,287,80:-20.4043,-21.0469,-51.2939,-22.8192,-51.903,-53.9883,-23.4146,-52.498,-54.2893,-54.8882,0,-29.177,-30.9517,-31.5471,-29.1388,-16.8056,-45.9038,-47.6927,-48.2911,-24.9439,-47.689 0|0:17:13,0,2,2,0,0:13:513:0,2,2,0,0:0,16,76,0,0:-2.48222,-6.39561,-48.7428,-6.19809,-48.422,-47.8199,0,-42.5066,-42.1914,-41.9046,-6.39561,-48.7428,-48.422,-42.5066,-48.7428,-6.39561,-48.7428,-48.422,-42.5066,-48.7428,-48.7428 0|0:6:0,0,0,0,6,0:0:0:0,0,0,6,0:0,0,0,195,0:-17.8234,-17.8234,-17.8234,-17.8234,-17.8234,-17.8234,-17.8234,-17.8234,-17.8234,-17.8234,-1.80618,-1.80618,-1.80618,-1.80618,0,-17.8234,-17.8234,-17.8234,-17.8234,-1.80618,-17.8234 dDocent_Contig_14182 30 . T C 170.337 . AB=0.304348;ABP=10.6577;AC=1;AF=0.166667;AN=6;AO=7;CIGAR=1X;DP=49;DPB=49;DPRA=1.76923;EPP=18.2106;EPPR=94.2121;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=279;QR=1684;RO=42;RPL=0;RPP=18.2106;RPPR=94.2121;RPR=7;RUN=1;SAF=7;SAP=18.2106;SAR=0;SRF=42;SRP=94.2121;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:23:16,7:16:636:7:279:-18.5566,0,-50.6478 0/0:10:10,0:10:401:0:0:0,-3.0103,-36.4494 0/0:16:16,0:16:647:0:0:0,-4.81648,-58.563 dDocent_Contig_14183 30 . A G 387.417 . AB=0.0645161;ABP=207.269;AC=1;AF=0.166667;AN=6;AO=8;CIGAR=2X3M2X3M;DP=124;DPB=124;DPRA=0;EPP=20.3821;EPPR=159.356;GTI=0;LEN=1;MEANALT=4.66667;MQM=55.875;MQMR=60;NS=3;NUMALT=5;ODDS=0;PAIRED=0;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=308;QR=2821;RO=72;RPL=0;RPP=20.3821;RPPR=159.356;RPR=8;RUN=1;SAF=8;SAP=20.3821;SAR=0;SRF=72;SRP=159.356;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|1:73:40,8,7,0,13,4:40:1567:8,7,0,13,4:308,263,0,514,152:-30.2669,-19.3928,-145.838,-20.7634,-126.703,-147.514,-42.3081,-148.246,-149.621,-171.165,0,-105.948,-107.322,-128.867,-124.953,-29.9168,-135.856,-137.231,-158.775,-116.476,-157.571 0|0:29:15,1,5,2,3,3:15:594:1,5,2,3,3:40,200,78,121,115:-11.9641,-13.5543,-62.1439,0,-45.9686,-47.3897,-10.0862,-56.0515,-42.5013,-58.3758,-6.50235,-52.4697,-38.9192,-49.0026,-54.4931,-7.05214,-53.0165,-39.4664,-49.5494,-45.9676,-55.0397 0|0:22:17,0,2,0,1,1:17:660:0,2,0,1,1:0,79,0,41,41:-1.38293,-6.50044,-60.7222,0,-54.2207,-53.6187,-6.50044,-60.7222,-54.2207,-60.7222,-3.11778,-57.342,-50.8404,-57.342,-57.041,-3.11778,-57.342,-50.8404,-57.342,-53.9617,-57.041 dDocent_Contig_14184 119 . G A 54.8181 . AB=0.25;ABP=11.6962;AC=2;AF=0.333333;AN=6;AO=4;CIGAR=1X;DP=42;DPB=42;DPRA=0.307692;EPP=11.6962;EPPR=85.5263;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=145;QR=1350;RO=38;RPL=0;RPP=11.6962;RPPR=85.5263;RPR=4;RUN=1;SAF=0;SAP=11.6962;SAR=4;SRF=0;SRP=85.5263;SRR=38;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:26:26,0:26:922:0:0:0,-7.82678,-83.2978 0/1:4:3,1:3:107:1:36:-2.39415,0,-8.77805 0/1:12:9,3:9:321:3:109:-6.55573,0,-25.6211 dDocent_Contig_14186 88 . T G 88.3988 . AB=0.25;ABP=18.2106;AC=2;AF=0.333333;AN=6;AO=8;CIGAR=3X;DP=52;DPB=52;DPRA=0;EPP=20.3821;EPPR=98.5551;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=258;QR=1494;RO=44;RPL=8;RPP=20.3821;RPPR=98.5551;RPR=0;RUN=1;SAF=8;SAP=20.3821;SAR=0;SRF=44;SRP=98.5551;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|1:15:11,4:11:367:4:132:-7.69113,0,-28.8376 0|0:24:23,1:23:783:1:34:0,-3.82581,-67.3873 0|1:13:10,3:10:344:3:92:-4.67133,0,-27.3796 dDocent_Contig_14188 58 . T C 705.599 . AB=0.375;ABP=8.43898;AC=4;AF=0.666667;AN=6;AO=26;CIGAR=1X;DP=52;DPB=52;DPRA=0;EPP=59.4686;EPPR=59.4686;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=985;QR=803;RO=26;RPL=26;RPP=59.4686;RPPR=59.4686;RPR=0;RUN=1;SAF=26;SAP=59.4686;SAR=0;SRF=26;SRP=59.4686;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:24:19,5:19:556:5:202:-11.3374,0,-43.0907 0/1:16:6,10:6:211:10:380:-29.7338,0,-14.512 1/1:12:1,11:1:36:11:403:-33.0102,-0.0140851,0 dDocent_Contig_14189 45 . T C 103.759 . AB=0.2;ABP=26.4622;AC=2;AF=0.333333;AN=6;AO=8;CIGAR=1X;DP=69;DPB=69;DPRA=0;EPP=20.3821;EPPR=135.47;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=328;QR=2449;RO=61;RPL=0;RPP=20.3821;RPPR=135.47;RPR=8;RUN=1;SAF=8;SAP=20.3821;SAR=0;SRF=61;SRP=135.47;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:9:7,2:7:285:2:82:-5.07041,0,-23.3151 0/0:39:37,2:37:1493:2:82:0,-3.96049,-126.833 0/1:21:17,4:17:671:4:164:-8.82827,0,-54.395 dDocent_Contig_14190 27 . A G 68.4239 . AB=0;ABP=0;AC=2;AF=0.333333;AN=6;AO=2;CIGAR=1X;DP=16;DPB=16;DPRA=0.285714;EPP=7.35324;EPPR=33.4109;GTI=0;LEN=1;MEANALT=1;MQM=45.5;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=0.5;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=78;QR=566;RO=14;RPL=0;RPP=7.35324;RPPR=33.4109;RPR=2;RUN=1;SAF=2;SAP=7.35324;SAR=0;SRF=14;SRP=33.4109;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:5:5,0:5:204:0:0:0,-1.50515,-18.744 1/1:2:0,2:0:0:2:78:-6.66589,-0.60206,0 0/0:9:9,0:9:362:0:0:0,-2.70927,-32.9435 dDocent_Contig_14192 9 . A G 292.939 . AB=0.197674;ABP=71.2854;AC=3;AF=0.5;AN=6;AO=17;CIGAR=1X;DP=86;DPB=86;DPRA=0;EPP=39.9253;EPPR=150.67;GTI=0;LEN=1;MEANALT=1.33333;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=0.823529;PAIREDR=0.764706;PAO=0;PQA=0;PQR=0;PRO=0;QA=663;QR=2599;RO=68;RPL=0;RPP=39.9253;RPPR=150.67;RPR=17;RUN=1;SAF=17;SAP=39.9253;SAR=0;SRF=68;SRP=150.67;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:38:29,8:29:1118:8:312:-16.9172,0,-89.394 0/1:11:6,5:6:230:5:195:-14.6129,0,-17.755 0/1:37:33,4:33:1251:4:156:-3.27918,0,-101.746 dDocent_Contig_14193 43 . G A 1240.9 . AB=0.575342;ABP=6.60959;AC=3;AF=0.5;AN=6;AO=42;CIGAR=1X;DP=73;DPB=73;DPRA=0;EPP=94.2121;EPPR=70.3259;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=0.809524;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=1673;QR=1238;RO=31;RPL=0;RPP=94.2121;RPPR=70.3259;RPR=42;RUN=1;SAF=42;SAP=94.2121;SAR=0;SRF=31;SRP=70.3259;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:36:11,25:11:441:25:1004:-79.8203,0,-29.2083 0/1:12:3,9:3:123:9:357:-28.8778,0,-7.85243 0/1:25:17,8:17:674:8:312:-20.9151,0,-53.4611 dDocent_Contig_14195 133 . C T 35.767 . AB=0.666667;ABP=3.73412;AC=1;AF=0.166667;AN=6;AO=2;CIGAR=1X;DP=27;DPB=27;DPRA=0.25;EPP=7.35324;EPPR=57.2971;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=66;QR=858;RO=25;RPL=0;RPP=7.35324;RPPR=57.2971;RPR=2;RUN=1;SAF=0;SAP=7.35324;SAR=2;SRF=0;SRP=57.2971;SRR=25;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:15:15,0:15:516:0:0:0,-4.51545,-46.7671 0/0:9:9,0:9:307:0:0:0,-2.70927,-27.9618 0/1:3:1,2:1:35:2:66:-5.36522,0,-2.59554 dDocent_Contig_14196 11 . G A 147.435 . AB=0.272727;ABP=7.94546;AC=1;AF=0.166667;AN=6;AO=3;CIGAR=1X3M1X;DP=40;DPB=40;DPRA=0;EPP=9.52472;EPPR=65.983;GTI=0;LEN=1;MEANALT=2;MQM=60;MQMR=60;NS=3;NUMALT=2;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=118;QR=1130;RO=29;RPL=0;RPP=9.52472;RPPR=65.983;RPR=3;RUN=1;SAF=3;SAP=9.52472;SAR=0;SRF=29;SRP=65.983;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|0:18:14,0,4:14:545:0,4:0,150:-8.44386,-12.6583,-57.4583,0,-45.1778,-43.9737 0|1:11:6,3,2:6:225:3,2:118,73:-7.91719,0,-17.534,-3.77078,-12.4757,-21.5862 0|0:11:9,0,2:9:360:0,2:0,76:-3.90348,-6.61275,-36.2843,0,-30.0549,-29.4528 dDocent_Contig_14197 56 . T C 1022.95 . AB=0.170886;ABP=151.66;AC=3;AF=0.5;AN=6;AO=27;CIGAR=1X4M;DP=158;DPB=166.4;DPRA=0;EPP=61.6401;EPPR=241.872;GTI=0;LEN=1;MEANALT=1.66667;MQM=59.1111;MQMR=60;NS=3;NUMALT=2;ODDS=0;PAIRED=0.962963;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=1068;QR=4125;RO=110;RPL=27;RPP=61.6401;RPPR=241.872;RPR=0;RUN=1;SAF=27;SAP=61.6401;SAR=0;SRF=110;SRP=241.872;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|1:102:81,19,2:81:3045:19,2:722,79:-34.811,0,-243.714,-52.6924,-242.933,-301.539 0|1:6:4,0,2:4:147:0,2:0,82:-5.9735,-7.17762,-19.1674,0,-12.3851,-11.7831 0|1:50:25,2,23:25:933:2,23:78,907:-67.0336,-68.148,-143.917,0,-69.9533,-69.4424 dDocent_Contig_14198 11 . G T 186.011 . AB=0.388889;ABP=4.9405;AC=1;AF=0.166667;AN=6;AO=7;CIGAR=2X;DP=33;DPB=33;DPRA=2.4;EPP=18.2106;EPPR=59.4686;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=0;PAIREDR=0.923077;PAO=0;PQA=0;PQR=0;PRO=0;QA=283;QR=1007;RO=26;RPL=0;RPP=18.2106;RPPR=59.4686;RPR=7;RUN=1;SAF=7;SAP=18.2106;SAR=0;SRF=26;SRP=59.4686;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|0:12:12,0:12:461:0:0:0,-3.61236,-41.8308 0|1:18:11,7:11:425:7:283:-20.4248,0,-33.1783 0|0:3:3,0:3:121:0:0:0,-0.90309,-11.2802 dDocent_Contig_14199 10 . T A 217.633 . AB=0.0898876;ABP=133.03;AC=1;AF=0.166667;AN=6;AO=8;CIGAR=2X1M1X;DP=112;DPB=112;DPRA=0;EPP=20.3821;EPPR=61.9184;GTI=0;LEN=1;MEANALT=4;MQM=60;MQMR=50.9872;NS=3;NUMALT=4;ODDS=0;PAIRED=1;PAIREDR=0.782051;PAO=0;PQA=0;PQR=0;PRO=0;QA=318;QR=2970;RO=78;RPL=0;RPP=20.3821;RPPR=172.385;RPR=8;RUN=1;SAF=8;SAP=20.3821;SAR=0;SRF=62;SRP=61.9184;SRR=16;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|1:59:45,1,7,3,3:45:1689:1,7,3,3:40,278,116,117:-9.34435,-19.5951,-140.107,0,-117.514,-118.703,-13.3643,-130.877,-111.279,-133.27,-13.274,-130.788,-111.189,-124.553,-133.181 0|0:23:12,4,0,4,3:12:467:4,0,4,3:149,0,135,117:-8.58734,0,-34.6696,-12.1997,-35.8737,-48.0704,-1.27855,-24.9441,-37.1396,-35.9355,-2.57254,-26.2511,-38.449,-27.5185,-37.546 0|0:30:21,1,1,2,5:21:814:1,1,2,5:39,40,76,191:-9.34658,-12.4616,-75.056,-12.3712,-72.0609,-74.9664,-9.43658,-69.1235,-69.0339,-71.728,0,-59.6835,-59.5939,-56.6565,-61.3851 dDocent_Contig_14200 37 . A G 70.3783 . AB=0.190476;ABP=20.4855;AC=1;AF=0.25;AN=4;AO=4;CIGAR=1X;DP=32;DPB=32;DPRA=1.90909;EPP=11.6962;EPPR=63.8115;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=2;NUMALT=1;ODDS=0;PAIRED=0;PAIREDR=0.785714;PAO=0;PQA=0;PQR=0;PRO=0;QA=163;QR=1127;RO=28;RPL=0;RPP=11.6962;RPPR=63.8115;RPR=4;RUN=1;SAF=4;SAP=11.6962;SAR=0;SRF=28;SRP=63.8115;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:21:17,4:17:691:4:163:-8.7368,0,-56.1972 ./.:.:.:.:.:.:.:. 0/0:11:11,0:11:436:0:0:0,-3.31133,-39.5915 dDocent_Contig_14201 125 . A G 794.926 . AB=0.409091;ABP=9.32731;AC=3;AF=0.5;AN=6;AO=36;CIGAR=1X;DP=88;DPB=88;DPRA=0;EPP=81.1833;EPPR=115.927;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=0;PAIREDR=0.865385;PAO=0;PQA=0;PQR=0;PRO=0;QA=1228;QR=1765;RO=52;RPL=0;RPP=81.1833;RPPR=115.927;RPR=36;RUN=1;SAF=0;SAP=81.1833;SAR=36;SRF=0;SRP=115.927;SRR=52;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:29:17,12:17:578:12:403:-27.8639,0,-43.6114 0/1:15:6,9:6:201:9:314:-24.0825,0,-13.9031 0/1:44:29,15:29:986:15:511:-33.0691,0,-75.8033 dDocent_Contig_14202 25 . T G 105.773 . AB=0.571429;ABP=3.32051;AC=1;AF=0.166667;AN=6;AO=4;CIGAR=1X;DP=27;DPB=27;DPRA=0.7;EPP=11.6962;EPPR=52.9542;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=0;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=157;QR=889;RO=23;RPL=0;RPP=11.6962;RPPR=52.9542;RPR=4;RUN=1;SAF=4;SAP=11.6962;SAR=0;SRF=23;SRP=52.9542;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:14:14,0:14:530:0:0:0,-4.21442,-48.0314 0/1:7:3,4:3:122:4:157:-12.4012,0,-9.26528 0/0:6:6,0:6:237:0:0:0,-1.80618,-21.7026 dDocent_Contig_14203 14 . A G 2167.91 . AB=0.493333;ABP=3.06821;AC=3;AF=0.5;AN=6;AO=74;CIGAR=1X;DP=150;DPB=150;DPRA=0;EPP=163.699;EPPR=168.042;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=2962;QR=3002;RO=76;RPL=0;RPP=163.699;RPPR=168.042;RPR=74;RUN=1;SAF=74;SAP=163.699;SAR=0;SRF=76;SRP=168.042;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:81:40,41:40:1576:41:1625:-122.093,0,-117.695 0/1:24:13,11:13:512:11:445:-33.181,0,-39.2009 0/1:45:23,22:23:914:22:892:-67.0403,0,-69.0164 dDocent_Contig_14204 119 . C A 35.6354 . AB=0.2;ABP=18.6449;AC=2;AF=0.5;AN=4;AO=4;CIGAR=1X;DP=20;DPB=20;DPRA=0;EPP=11.6962;EPPR=37.7539;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=2;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=0.9375;PAO=0;PQA=0;PQR=0;PRO=0;QA=126;QR=556;RO=16;RPL=0;RPP=11.6962;RPPR=37.7539;RPR=4;RUN=1;SAF=0;SAP=11.6962;SAR=4;SRF=0;SRP=37.7539;SRR=16;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:12:9,3:9:315:3:95:-5.25185,0,-25.0764 0/1:8:7,1:7:241:1:31:-0.691214,0,-19.6183 ./.:.:.:.:.:.:.:. dDocent_Contig_14205 16 . T C 2310.06 . AB=0.785714;ABP=52.644;AC=4;AF=0.666667;AN=6;AO=71;CIGAR=1X;DP=86;DPB=86;DPRA=0;EPP=157.185;EPPR=35.5824;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=2830;QR=604;RO=15;RPL=0;RPP=157.185;RPPR=35.5824;RPR=71;RUN=1;SAF=71;SAP=157.185;SAR=0;SRF=15;SRP=35.5824;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:49:9,40:9:367:40:1589:-128.49,0,-18.6446 1/1:16:0,16:0:0:16:642:-58.1127,-4.81648,0 0/1:21:6,15:6:237:15:599:-47.9255,0,-15.3795 dDocent_Contig_14206 25 . G C 139.029 . AB=0;ABP=0;AC=0;AF=0;AN=6;AO=2;CIGAR=1X1M1X5M1X;DP=43;DPB=43;DPRA=27;EPP=7.35324;EPPR=76.8404;GTI=0;LEN=1;MEANALT=2;MQM=27;MQMR=60;NS=3;NUMALT=2;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=54;QR=1339;RO=34;RPL=0;RPP=7.35324;RPPR=76.8404;RPR=2;RUN=1;SAF=2;SAP=7.35324;SAR=0;SRF=34;SRP=76.8404;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|0:27:24,2,1:24:950:2,1:54,40:0,-3.59449,-81.2031,-4.15334,-78.7781,-82.182 0|0:15:9,0,6:9:350:0,6:0,230:-15.7253,-18.4346,-47.2085,0,-29.1501,-27.3439 0|0:1:1,0,0:1:39:0,0:0,0:0,-0.30103,-3.89656,-0.30103,-3.89656,-3.89656 dDocent_Contig_14207 108 . C T 32.3684 . AB=0.1875;ABP=16.582;AC=1;AF=0.166667;AN=6;AO=3;CIGAR=1X;DP=40;DPB=40;DPRA=1.33333;EPP=9.52472;EPPR=83.3548;GTI=0;LEN=1;MEANALT=1;MQM=42;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=0;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=105;QR=1186;RO=37;RPL=0;RPP=9.52472;RPPR=83.3548;RPR=3;RUN=1;SAF=0;SAP=9.52472;SAR=3;SRF=0;SRP=83.3548;SRR=37;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:16:13,3:13:375:3:105:-4.75937,0,-29.2128 0/0:4:4,0:4:137:0:0:0,-1.20412,-12.6682 0/0:20:20,0:20:674:0:0:0,-6.0206,-60.9772 dDocent_Contig_14208 59 . T C 75.5273 . AB=0.131148;ABP=75.0961;AC=1;AF=0.166667;AN=6;AO=8;CIGAR=1X;DP=84;DPB=84;DPRA=5.30435;EPP=20.3821;EPPR=168.042;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=301;QR=2951;RO=76;RPL=8;RPP=20.3821;RPPR=168.042;RPR=0;RUN=1;SAF=8;SAP=20.3821;SAR=0;SRF=76;SRP=168.042;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:61:53,8:53:2041:8:301:-9.0756,0,-165.525 0/0:7:7,0:7:280:0:0:0,-2.10721,-25.5719 0/0:16:16,0:16:630:0:0:0,-4.81648,-57.0314 dDocent_Contig_14211 16 . G A 30.568 . AB=0.15;ABP=24.2907;AC=2;AF=0.333333;AN=6;AO=3;CIGAR=3M1X;DP=39;DPB=41.25;DPRA=0.526316;EPP=9.52472;EPPR=74.6689;GTI=0;LEN=1;MEANALT=2;MQM=22;MQMR=60;NS=3;NUMALT=2;ODDS=0;PAIRED=0;PAIREDR=0.969697;PAO=0;PQA=0;PQR=0;PRO=0;QA=120;QR=1310;RO=33;RPL=0;RPP=9.52472;RPPR=74.6689;RPR=3;RUN=1;SAF=3;SAP=9.52472;SAR=0;SRF=33;SRP=74.6689;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|1:12:10,1,1:10:400:1,1:39,41:-0.0427563,0,-32.8131,-1.45152,-31.4564,-34.1327 0|1:8:4,2,2:4:160:2,2:79,79:-4.87845,0,-12.6981,-2.81316,-10.0168,-15.4125 0|0:19:19,0,0:19:750:0,0:0,0:0,-5.71957,-67.8234,-5.71957,-67.8234,-67.8234 dDocent_Contig_14212 11 . C A 6423.37 . AB=0.0703125;ABP=618.826;AC=1;AF=0.166667;AN=6;AO=27;CIGAR=1X2M1X4M1X;DP=384;DPB=385.778;DPRA=0;EPP=61.6401;EPPR=39.9253;GTI=0;LEN=1;MEANALT=15.6667;MQM=59.7407;MQMR=60;NS=3;NUMALT=5;ODDS=0;PAIRED=0;PAIREDR=0.941176;PAO=0;PQA=0;PQR=0;PRO=0;QA=1049;QR=669;RO=17;RPL=0;RPP=61.6401;RPPR=39.9253;RPR=27;RUN=1;SAF=27;SAP=61.6401;SAR=0;SRF=17;SRP=39.9253;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|0:186:11,14,15,95,3,12:11:431:14,15,95,3,12:559,573,3612,116,472:-300.876,-258.144,-289.373,-257.196,-246.596,-288.124,-11.5478,-0.94649,0,-18.3941,-294.694,-284.094,-283.146,-37.4988,-329.234,-265.514,-254.913,-253.965,-8.31684,-291.464,-297.344 1|0:86:0,9,8,44,0,4:0:0:9,8,44,0,4:345,313,1686,0,156:-165.676,-137.364,-134.655,-140.279,-111.967,-137.871,-28.3141,0,-2.91493,-15.0688,-165.676,-137.364,-140.279,-28.3141,-165.676,-152.853,-124.541,-127.456,-15.4901,-152.853,-151.649 0|0:112:6,4,4,55,10,6:6:238:4,4,55,10,6:145,159,2095,400,239:-181.292,-171.284,-189.672,-170.076,-177.855,-188.464,-12.6745,-20.4544,-19.2453,-15.7103,-150.831,-158.609,-157.401,0,-167.413,-163.499,-171.278,-170.07,-12.6684,-150.825,-181.286 dDocent_Contig_14213 8 . C A 4047.46 . AB=0.43695;ABP=14.7846;AC=3;AF=0.5;AN=6;AO=149;CIGAR=1X;DP=341;DPB=341;DPRA=0;EPP=326.56;EPPR=419.933;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=5691;QR=7360;RO=192;RPL=0;RPP=326.56;RPPR=419.933;RPR=149;RUN=1;SAF=149;SAP=326.56;SAR=0;SRF=192;SRP=419.933;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:203:118,85:118:4522:85:3258:-232.254,0,-345.922 0/1:29:13,16:13:491:16:612:-46.6898,0,-35.8052 0/1:109:61,48:61:2347:48:1821:-131.325,0,-178.628 dDocent_Contig_14217 7 . A G 1421.8 . AB=0.125;ABP=61.6401;AC=1;AF=0.166667;AN=6;AO=6;CIGAR=1X2M3X;DP=73;DPB=73.3333;DPRA=0;EPP=16.0391;EPPR=42.0968;GTI=0;LEN=1;MEANALT=3;MQM=60;MQMR=60;NS=3;NUMALT=2;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=198;QR=702;RO=18;RPL=0;RPP=16.0391;RPPR=42.0968;RPR=6;RUN=1;SAF=6;SAP=16.0391;SAR=0;SRF=18;SRP=42.0968;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 1|0:48:5,6,35:5:194:6,35:198,1391:-113.072,-98.5819,-112.714,-0.0217114,0,-5.44005 0|0:11:6,0,5:6:233:0,5:0,192:-14.3378,-16.144,-35.2921,0,-19.5337,-18.0286 0|0:14:7,0,7:7:275:0,7:0,267:-20.1729,-22.2801,-44.9054,0,-23.012,-20.9048 dDocent_Contig_14218 14 . T C 835.787 . AB=0.0779221;ABP=122.159;AC=3;AF=0.5;AN=6;AO=6;CIGAR=1X2M1X;DP=88;DPB=88;DPRA=0;EPP=16.0391;EPPR=102.898;GTI=0;LEN=1;MEANALT=3.5;MQM=60;MQMR=60;NS=3;NUMALT=2;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=236;QR=1788;RO=46;RPL=0;RPP=16.0391;RPPR=102.898;RPR=6;RUN=1;SAF=6;SAP=16.0391;SAR=0;SRF=46;SRP=102.898;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|1:32:12,14,4:12:465:14,4:549,157:-41.5323,0,-33.9806,-32.2331,-25.2827,-69.2266 0|1:45:28,13,2:28:1087:13,2:509,79:-33.4159,0,-85.3795,-35.3441,-82.7919,-124.044 0|1:11:6,5,0:6:236:5,0:190,0:-14.1533,0,-18.3004,-15.9595,-19.8056,-35.3794 dDocent_Contig_14219 72 . T C 792.181 . AB=0.604167;ABP=7.5342;AC=3;AF=0.5;AN=6;AO=29;CIGAR=1X;DP=48;DPB=48;DPRA=0;EPP=65.983;EPPR=44.2683;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=3.46945e-18;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=1089;QR=721;RO=19;RPL=29;RPP=65.983;RPPR=44.2683;RPR=0;RUN=1;SAF=29;SAP=65.983;SAR=0;SRF=19;SRP=44.2683;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:26:9,17:9:332:17:645:-50.5562,0,-22.3938 0/1:7:1,6:1:41:6:219:-17.955,0,-1.98736 0/1:15:9,6:9:348:6:225:-16.0954,0,-27.1646 dDocent_Contig_14220 9 . A T 1285.91 . AB=0.717391;ABP=21.8927;AC=4;AF=0.666667;AN=6;AO=42;CIGAR=1X;DP=55;DPB=55;DPRA=0;EPP=94.2121;EPPR=31.2394;GTI=0;LEN=1;MEANALT=1;MQM=59.4762;MQMR=58.3077;NS=3;NUMALT=1;ODDS=0;PAIRED=0;PAIREDR=0.769231;PAO=0;PQA=0;PQR=0;PRO=0;QA=1611;QR=486;RO=13;RPL=0;RPP=94.2121;RPPR=31.2394;RPR=42;RUN=1;SAF=42;SAP=94.2121;SAR=0;SRF=13;SRP=31.2394;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:12:5,7:5:191:7:259:-20.0522,0,-13.9457 1/1:9:0,9:0:0:9:349:-31.7425,-2.70927,0 0/1:34:8,26:8:295:26:1003:-80.3192,0,-16.5882 dDocent_Contig_14223 18 . T C 135.176 . AB=0.416667;ABP=3.73412;AC=1;AF=0.166667;AN=6;AO=5;CIGAR=1X;DP=33;DPB=33;DPRA=1.14286;EPP=13.8677;EPPR=63.8115;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=203;QR=1131;RO=28;RPL=0;RPP=13.8677;RPPR=63.8115;RPR=5;RUN=1;SAF=5;SAP=13.8677;SAR=0;SRF=28;SRP=63.8115;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:12:7,5:7:281:5:203:-15.0405,0,-22.0487 0/0:13:13,0:13:524:0:0:0,-3.91339,-47.5071 0/0:8:8,0:8:326:0:0:0,-2.40824,-29.7099 dDocent_Contig_14224 22 . C G 90.1205 . AB=0.152542;ABP=64.8789;AC=3;AF=0.5;AN=6;AO=9;CIGAR=1X;DP=59;DPB=59;DPRA=0;EPP=22.5536;EPPR=111.584;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=3.46945e-18;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=339;QR=1982;RO=50;RPL=0;RPP=22.5536;RPPR=111.584;RPR=9;RUN=1;SAF=9;SAP=22.5536;SAR=0;SRF=50;SRP=111.584;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:30:25,5:25:1000:5:177:-7.24166,0,-81.2628 0/1:20:17,3:17:661:3:121:-5.25939,0,-53.7964 0/1:9:8,1:8:321:1:41:-1.3853,0,-26.5481 dDocent_Contig_14225 22 . G A 633.039 . AB=0.413043;ABP=6.03148;AC=4;AF=0.666667;AN=6;AO=22;CIGAR=1X;DP=49;DPB=49;DPRA=0;EPP=50.7827;EPPR=61.6401;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=884;QR=1076;RO=27;RPL=0;RPP=50.7827;RPPR=61.6401;RPR=22;RUN=1;SAF=22;SAP=50.7827;SAR=0;SRF=27;SRP=61.6401;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:30:18,12:18:718:12:482:-34.6994,0,-55.9152 1/1:3:0,3:0:0:3:122:-11.3725,-0.90309,0 0/1:16:9,7:9:358:7:280:-20.7547,0,-27.7648 dDocent_Contig_14228 8 . C T 160.458 . AB=0.411765;ABP=4.1599;AC=2;AF=0.333333;AN=6;AO=7;CIGAR=1X;DP=33;DPB=33;DPRA=0.53125;EPP=18.2106;EPPR=59.4686;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=266;QR=1013;RO=26;RPL=0;RPP=18.2106;RPPR=59.4686;RPR=7;RUN=1;SAF=7;SAP=18.2106;SAR=0;SRF=26;SRP=59.4686;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:16:16,0:16:624:0:0:0,-4.81648,-56.5002 0/1:6:4,2:4:155:2:78:-5.59729,0,-12.5193 0/1:11:6,5:6:234:5:188:-13.9714,0,-18.1198 dDocent_Contig_14229 63 . G A 105.986 . AB=0.238095;ABP=15.5221;AC=1;AF=0.166667;AN=6;AO=5;CIGAR=1X;DP=54;DPB=54;DPRA=1.27273;EPP=13.8677;EPPR=109.412;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=0.938776;PAO=0;PQA=0;PQR=0;PRO=0;QA=204;QR=1883;RO=49;RPL=5;RPP=13.8677;RPPR=109.412;RPR=0;RUN=1;SAF=5;SAP=13.8677;SAR=0;SRF=49;SRP=109.412;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:29:29,0:29:1111:0:0:0,-8.72987,-100.268 0/0:4:4,0:4:136:0:0:0,-1.20412,-12.5707 0/1:21:16,5:16:636:5:204:-12.4224,0,-51.2458 dDocent_Contig_14231 30 . A T 178.868 . AB=0.285714;ABP=14.1779;AC=2;AF=0.333333;AN=6;AO=10;CIGAR=1X;DP=79;DPB=79;DPRA=0;EPP=24.725;EPPR=152.842;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=398;QR=2727;RO=69;RPL=0;RPP=24.725;RPPR=152.842;RPR=10;RUN=1;SAF=10;SAP=24.725;SAR=0;SRF=69;SRP=152.842;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:51:49,2:49:1938:2:75:0,-8.23373,-167.501 0/1:6:3,3:3:122:3:119:-9.28832,0,-9.56631 0/1:22:17,5:17:667:5:204:-12.1214,0,-53.7333 dDocent_Contig_14232 22 . T A 202.911 . AB=0.205128;ABP=32.4644;AC=3;AF=0.5;AN=6;AO=8;CIGAR=1X3M;DP=39;DPB=39;DPRA=0;EPP=20.3821;EPPR=61.6401;GTI=0;LEN=1;MEANALT=1.66667;MQM=60;MQMR=60;NS=3;NUMALT=2;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=327;QR=1067;RO=27;RPL=0;RPP=20.3821;RPPR=61.6401;RPR=8;RUN=1;SAF=8;SAP=20.3821;SAR=0;SRF=27;SRP=61.6401;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|1:17:14,1,2:14:563:1,2:38,82:-2.57356,-3.68138,-49.7715,0,-43.3034,-45.8164 0|1:14:10,3,1:10:398:3,1:120,41:-6.86753,0,-31.8573,-6.49127,-29.3752,-38.9599 0|1:8:3,0,5:3:106:0,5:0,204:-16.3358,-17.2389,-25.8465,0,-8.98101,-7.47586 dDocent_Contig_14233 1 . N G 61.7185 . AB=0;ABP=0;AC=2;AF=1;AN=2;AO=2;CIGAR=1X;DP=2;DPB=2;DPRA=0;EPP=7.35324;EPPR=0;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=0;NS=1;NUMALT=1;ODDS=5.99146;PAIRED=1;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=65;QR=0;RO=0;RPL=0;RPP=7.35324;RPPR=0;RPR=2;RUN=1;SAF=2;SAP=7.35324;SAR=0;SRF=0;SRP=0;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 1/1:2:0,2:0:0:2:65:-6.17077,-0.60206,0 ./.:.:.:.:.:.:.:. ./.:.:.:.:.:.:.:. dDocent_Contig_14234 52 . G A 248.83 . AB=0.233333;ABP=21.5402;AC=4;AF=0.666667;AN=6;AO=10;CIGAR=1X;DP=33;DPB=33;DPRA=0;EPP=24.725;EPPR=52.9542;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=1.73472e-18;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=403;QR=907;RO=23;RPL=10;RPP=24.725;RPPR=52.9542;RPR=0;RUN=1;SAF=10;SAP=24.725;SAR=0;SRF=23;SRP=52.9542;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:20:17,3:17:668:3:121:-5.2596,0,-54.4299 1/1:3:0,3:0:0:3:122:-11.3725,-0.90309,0 0/1:10:6,4:6:239:4:160:-11.7735,0,-18.8742 dDocent_Contig_14235 95 . T C 78.1547 . AB=0;ABP=0;AC=2;AF=1;AN=2;AO=3;CIGAR=1X2M1X;DP=3;DPB=9.25;DPRA=0;EPP=9.52472;EPPR=0;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=0;NS=1;NUMALT=1;ODDS=6.68461;PAIRED=1;PAIREDR=0;PAO=9;PQA=311;PQR=0;PRO=0;QA=87;QR=0;RO=0;RPL=3;RPP=9.52472;RPPR=0;RPR=0;RUN=1;SAF=3;SAP=9.52472;SAR=0;SRF=0;SRP=0;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL .:.:.:.:.:.:.:. .:.:.:.:.:.:.:. 1|1:3:0,3:0:0:3:87:-7.81492,-0.90309,0 dDocent_Contig_14236 8 . C T 130.507 . AB=0.114754;ABP=81.6461;AC=2;AF=0.333333;AN=6;AO=7;CIGAR=1X1M1X;DP=61;DPB=61;DPRA=0;EPP=18.2106;EPPR=107.241;GTI=0;LEN=1;MEANALT=1.66667;MQM=52;MQMR=60;NS=3;NUMALT=2;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=268;QR=1839;RO=48;RPL=0;RPP=18.2106;RPPR=107.241;RPR=7;RUN=1;SAF=7;SAP=18.2106;SAR=0;SRF=48;SRP=107.241;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|0:31:23,2,5:23:879:2,5:78,203:-9.82729,-10.3754,-81.8784,0,-65.7341,-70.6091 0|1:8:6,2,0:6:229:2,0:75,0:-4.68635,0,-18.5671,-6.49253,-19.1691,-25.2863 0|1:22:19,3,0:19:731:3,0:115,0:-4.05842,0,-59.4987,-9.77799,-60.4018,-69.7979 dDocent_Contig_14238 28 . G A 1263.47 . AB=0.494505;ABP=3.03416;AC=3;AF=0.5;AN=6;AO=45;CIGAR=1X;DP=91;DPB=91;DPRA=0;EPP=100.727;EPPR=102.898;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=0.978261;PAO=0;PQA=0;PQR=0;PRO=0;QA=1758;QR=1824;RO=46;RPL=0;RPP=100.727;RPPR=102.898;RPR=45;RUN=1;SAF=45;SAP=100.727;SAR=0;SRF=46;SRP=102.898;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:54:34,20:34:1343:20:778:-54.0756,0,-104.873 0/1:17:2,15:2:81:15:585:-47.8691,0,-2.56822 0/1:20:10,10:10:400:10:395:-29.8873,0,-30.3384 dDocent_Contig_14239 36 . C T 184.467 . AB=0.134454;ABP=141.127;AC=2;AF=0.333333;AN=6;AO=16;CIGAR=1X;DP=122;DPB=122;DPRA=19.8333;EPP=37.7539;EPPR=233.186;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=634;QR=4240;RO=106;RPL=0;RPP=37.7539;RPPR=233.186;RPR=16;RUN=1;SAF=16;SAP=37.7539;SAR=0;SRF=106;SRP=233.186;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:100:87,13:87:3484:13:514:-16.5013,0,-283.493 0/0:3:3,0:3:112:0:0:0,-0.90309,-10.4446 0/1:19:16,3:16:644:3:120:-5.46812,0,-52.5733 dDocent_Contig_14241 14 . A T 62.3725 . AB=0.272727;ABP=7.94546;AC=1;AF=0.166667;AN=6;AO=3;CIGAR=1X;DP=49;DPB=49;DPRA=0.578947;EPP=9.52472;EPPR=102.898;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=122;QR=1853;RO=46;RPL=0;RPP=9.52472;RPPR=102.898;RPR=3;RUN=1;SAF=3;SAP=9.52472;SAR=0;SRF=46;SRP=102.898;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:21:21,0:21:846:0:0:0,-6.32163,-76.4528 0/1:11:8,3:8:323:3:122:-8.06116,0,-26.1268 0/0:17:17,0:17:684:0:0:0,-5.11751,-61.8904 dDocent_Contig_14242 35 . G A 96.49 . AB=0.8;ABP=6.91895;AC=1;AF=0.166667;AN=6;AO=4;CIGAR=1X;DP=24;DPB=24;DPRA=0.526316;EPP=3.0103;EPPR=46.4397;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=0;PAIREDR=0.9;PAO=0;PQA=0;PQR=0;PRO=0;QA=140;QR=784;RO=20;RPL=0;RPP=11.6962;RPPR=46.4397;RPR=4;RUN=1;SAF=2;SAP=3.0103;SAR=2;SRF=20;SRP=46.4397;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:12:12,0:12:467:0:0:0,-3.61236,-42.379 0/1:5:1,4:1:41:4:140:-11.4371,0,-2.58942 0/0:7:7,0:7:276:0:0:0,-2.10721,-25.2084 dDocent_Contig_14243 182 . G A 294.653 . AB=0.423077;ABP=4.34659;AC=2;AF=0.5;AN=4;AO=11;CIGAR=1X;DP=26;DPB=26;DPRA=0;EPP=26.8965;EPPR=35.5824;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=2;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=447;QR=597;RO=15;RPL=11;RPP=26.8965;RPPR=35.5824;RPR=0;RUN=1;SAF=0;SAP=26.8965;SAR=11;SRF=0;SRP=35.5824;SRR=15;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:18:9,9:9:353:9:366:-27.8866,0,-26.7089 ./.:.:.:.:.:.:.:. 0/1:8:6,2:6:244:2:81:-5.27749,0,-19.9306 dDocent_Contig_14244 7 . A G 1004.75 . AB=0.304762;ABP=37.7745;AC=1;AF=0.166667;AN=6;AO=32;CIGAR=1X2M1X;DP=116;DPB=116;DPRA=0;EPP=72.4974;EPPR=105.07;GTI=0;LEN=1;MEANALT=2.5;MQM=60;MQMR=60;NS=3;NUMALT=2;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=1060;QR=1818;RO=47;RPL=0;RPP=72.4974;RPPR=105.07;RPR=32;RUN=1;SAF=32;SAP=72.4974;SAR=0;SRF=47;SRP=105.07;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|1:89:36,29,23:36:1391:29,23:956,919:-66.3926,0,-105.515,-1.5048,-38.5446,-108.862 0|0:11:7,0,4:7:271:0,4:0,160:-11.4721,-13.5793,-35.8335,0,-22.6491,-21.445 0|0:16:4,3,9:4:156:3,9:104,356:-28.1292,-20.8935,-32.8122,0,-4.41473,-10.1389 dDocent_Contig_14245 15 . G T 233.279 . AB=0.128205;ABP=190.314;AC=2;AF=0.333333;AN=6;AO=21;CIGAR=1X;DP=193;DPB=193;DPRA=0;EPP=48.6112;EPPR=376.504;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=0.959302;PAO=0;PQA=0;PQR=0;PRO=0;QA=850;QR=6606;RO=172;RPL=0;RPP=48.6112;RPPR=376.504;RPR=21;RUN=1;SAF=21;SAP=48.6112;SAR=0;SRF=172;SRP=376.504;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:141:123,18:123:4743:18:730:-23.5788,0,-384.381 0/1:15:13,2:13:492:2:82:-3.26423,0,-40.1024 0/0:37:36,1:36:1371:1:38:0,-7.34084,-119.854 dDocent_Contig_14246 84 . C T 259.591 . AB=0.25;ABP=33.4109;AC=3;AF=0.5;AN=6;AO=14;CIGAR=1X;DP=56;DPB=56;DPRA=0;EPP=33.4109;EPPR=94.2121;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=504;QR=1403;RO=42;RPL=14;RPP=33.4109;RPPR=94.2121;RPR=0;RUN=1;SAF=14;SAP=33.4109;SAR=0;SRF=42;SRP=94.2121;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:29:20,9:20:666:9:325:-20.8664,0,-51.5227 0/1:15:11,4:11:380:4:142:-8.61382,0,-30.0175 0/1:12:11,1:11:357:1:37:-0.0854694,0,-28.8307 dDocent_Contig_14247 23 . A T 759.004 . AB=0.166667;ABP=49.335;AC=1;AF=0.166667;AN=6;AO=8;CIGAR=1M4D1X12M;DP=95;DPB=84.2222;DPRA=0;EPP=20.3821;EPPR=52.9542;GTI=0;LEN=1;MEANALT=5;MQM=60;MQMR=60;NS=3;NUMALT=6;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=321;QR=846;RO=23;RPL=0;RPP=20.3821;RPPR=52.9542;RPR=8;RUN=1;SAF=8;SAP=20.3821;SAR=0;SRF=23;SRP=52.9542;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|0:47:8,14,0,5,3,9,7:8:300:14,0,5,3,9,7:530,0,198,116,347,251:-44.9654,-3.92366,-24.284,-47.3736,-28.4984,-71.9472,-31.0738,-12.1974,-55.6481,-54.143,-37.845,-18.9693,-62.4188,-46.1194,-61.5157,-18.877,0,-43.4516,-27.1513,-33.9227,-40.7423,-26.9072,-8.03205,-51.4803,-35.181,-41.9519,-22.9847,-49.3731 1|0:26:5,1,7,7,0,5,0:5:194:1,7,7,0,5,0:38,280,258,0,184,0:-26.7224,-25.1103,-40.7535,-5.1452,-17.9776,-18.9881,-7.13644,-19.9654,0,-20.9752,-28.2275,-41.0545,-21.0953,-23.0824,-44.1715,-13.1847,-26.0129,-6.04994,-8.04119,-29.1299,-27.6248,-28.2275,-41.0545,-21.0953,-23.0824,-44.1715,-29.1299,-44.1715 0|0:22:10,0,1,3,0,4,3:10:352:0,1,3,0,4,3:0,41,118,0,155,114:-9.73528,-12.7456,-41.393,-9.3572,-38.0064,-37.7054,-3.02864,-31.6807,-28.2934,-30.7776,-12.7456,-41.393,-38.0064,-31.6807,-41.393,0,-28.6533,-25.2658,-18.9382,-28.6533,-27.4492,-3.39032,-32.0401,-28.6529,-22.3261,-32.0401,-19.2981,-31.137 dDocent_Contig_14248 17 . C T 161.376 . AB=0.106227;ABP=370.689;AC=2;AF=0.333333;AN=6;AO=29;CIGAR=1X;DP=314;DPB=314;DPRA=3.32927;EPP=65.983;EPPR=621.88;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=1.38778e-17;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=1124;QR=11393;RO=285;RPL=0;RPP=65.983;RPPR=621.88;RPR=29;RUN=1;SAF=29;SAP=65.983;SAR=0;SRF=285;SRP=621.88;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:222:200,22:200:8072:22:854:-10.3475,0,-659.174 0/0:41:41,0:41:1598:0:0:0,-12.3422,-144.059 0/1:51:44,7:44:1723:7:270:-9.313,0,-139.938 dDocent_Contig_14249 16 . G T 93.3711 . AB=0.117647;ABP=110.945;AC=1;AF=0.166667;AN=6;AO=13;CIGAR=1X;DP=152;DPB=152;DPRA=0;EPP=31.2394;EPPR=304.845;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=507;QR=5576;RO=139;RPL=0;RPP=31.2394;RPPR=304.845;RPR=13;RUN=1;SAF=13;SAP=31.2394;SAR=0;SRF=139;SRP=304.845;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:85:75,10:75:3004:10:401:-10.86,0,-244.858 0/0:34:33,1:33:1323:1:41:0,-6.14045,-115.234 0/0:33:31,2:31:1249:2:65:0,-3.76425,-106.506 dDocent_Contig_14250 17 . G A 106.436 . AB=0.1875;ABP=30.1537;AC=1;AF=0.25;AN=4;AO=7;CIGAR=1X;DP=50;DPB=50;DPRA=0;EPP=18.2106;EPPR=96.3836;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=2;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=280;QR=1714;RO=43;RPL=0;RPP=18.2106;RPPR=96.3836;RPR=7;RUN=1;SAF=7;SAP=18.2106;SAR=0;SRF=43;SRP=96.3836;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:32:26,6:26:1045:6:240:-12.3425,0,-84.7086 ./.:.:.:.:.:.:.:. 0/0:18:17,1:17:669:1:40:0,-1.42286,-56.542 dDocent_Contig_14251 17 . A C 46.6291 . AB=0.1875;ABP=16.582;AC=1;AF=0.166667;AN=6;AO=3;CIGAR=1X;DP=28;DPB=28;DPRA=2.66667;EPP=9.52472;EPPR=57.2971;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=118;QR=983;RO=25;RPL=0;RPP=9.52472;RPPR=57.2971;RPR=3;RUN=1;SAF=3;SAP=9.52472;SAR=0;SRF=25;SRP=57.2971;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:16:13,3:13:517:3:118:-6.18572,0,-42.059 0/0:7:7,0:7:282:0:0:0,-2.10721,-25.7515 0/0:5:5,0:5:184:0:0:0,-1.50515,-16.9128 dDocent_Contig_14252 21 . T G 393.741 . AB=0.215054;ABP=68.5981;AC=3;AF=0.5;AN=6;AO=20;CIGAR=1X;DP=93;DPB=93;DPRA=0;EPP=46.4397;EPPR=161.528;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=796;QR=2895;RO=73;RPL=0;RPP=46.4397;RPPR=161.528;RPR=20;RUN=1;SAF=20;SAP=46.4397;SAR=0;SRF=73;SRP=161.528;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:61:46,15:46:1817:15:599:-35.8845,0,-145.367 0/1:25:21,4:21:837:4:156:-6.89069,0,-68.119 0/1:7:6,1:6:241:1:41:-1.98736,0,-19.958 dDocent_Contig_14253 8 . C A 241.182 . AB=0.205882;ABP=28.557;AC=3;AF=0.5;AN=6;AO=7;CIGAR=1X1M;DP=49;DPB=49;DPRA=0;EPP=18.2106;EPPR=70.3259;GTI=0;LEN=1;MEANALT=2;MQM=60;MQMR=60;NS=3;NUMALT=2;ODDS=6.93889e-18;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=272;QR=1192;RO=31;RPL=0;RPP=18.2106;RPPR=70.3259;RPR=7;RUN=1;SAF=7;SAP=18.2106;SAR=0;SRF=31;SRP=70.3259;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|1:34:21,6,7:21:809:6,7:234,272:-16.0294,-3.11509,-67.7361,0,-47.1897,-64.3188 0|1:8:6,2,0:6:228:2,0:77,0:-4.9009,0,-18.4762,-6.70708,-19.0783,-25.4019 0|1:7:4,3,0:4:155:3,0:116,0:-8.71049,0,-12.2182,-9.91461,-13.1213,-22.6492 dDocent_Contig_14254 118 . A T 102.196 . AB=0.2;ABP=14.7363;AC=3;AF=0.5;AN=6;AO=5;CIGAR=1X;DP=27;DPB=27;DPRA=0.85;EPP=13.8677;EPPR=50.7827;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=173;QR=677;RO=22;RPL=0;RPP=13.8677;RPPR=50.7827;RPR=5;RUN=1;SAF=0;SAP=13.8677;SAR=5;SRF=0;SRP=50.7827;SRR=22;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:15:12,3:12:373:3:103:-5.09457,0,-29.3561 1/1:2:0,2:0:0:2:70:-6.6474,-0.60206,0 0/0:10:10,0:10:304:0:0:0,-3.0103,-27.6565 dDocent_Contig_14255 37 . A C 129.752 . AB=0.2;ABP=14.7363;AC=3;AF=0.5;AN=6;AO=3;CIGAR=1X2M1X;DP=38;DPB=38;DPRA=0;EPP=9.52472;EPPR=59.4686;GTI=0;LEN=1;MEANALT=2;MQM=60;MQMR=60;NS=3;NUMALT=3;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=117;QR=1017;RO=26;RPL=0;RPP=9.52472;RPPR=59.4686;RPR=3;RUN=1;SAF=3;SAP=9.52472;SAR=0;SRF=26;SRP=59.4686;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|1:12:8,3,0,1:8:318:3,0,1:120,0,33:-7.52903,0,-25.3363,-9.93727,-26.2394,-36.1269,-7.2865,-23.5787,-33.4644,-33.1634 0|1:11:7,2,0,2:7:275:2,0,2:81,0,80:-4.57442,0,-22.0113,-6.68163,-22.6133,-29.2944,-0.0939437,-16.0216,-22.7034,-22.1014 0|1:15:11,1,3,0:11:424:1,3,0:41,117,0:-6.29099,-6.21328,-40.7205,0,-31.4034,-33.8864,-9.60232,-41.0216,-34.7895,-44.4072 dDocent_Contig_14256 13 . T A 169.28 . AB=0.257143;ABP=20.9405;AC=3;AF=0.5;AN=6;AO=9;CIGAR=1X;DP=35;DPB=35;DPRA=0;EPP=22.5536;EPPR=59.4686;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=352;QR=1044;RO=26;RPL=0;RPP=22.5536;RPPR=59.4686;RPR=9;RUN=1;SAF=9;SAP=22.5536;SAR=0;SRF=26;SRP=59.4686;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:25:18,7:18:721:7:271:-17.2278,0,-57.6909 0/1:3:2,1:2:78:1:40:-3.09259,0,-6.50021 0/1:7:6,1:6:245:1:41:-1.98736,0,-20.3223 dDocent_Contig_14257 86 . C T 2541.2 . AB=0.613497;ABP=21.248;AC=3;AF=0.5;AN=6;AO=100;CIGAR=1X;DP=163;DPB=163;DPRA=0;EPP=220.158;EPPR=139.813;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=6.93889e-18;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=3420;QR=2180;RO=63;RPL=100;RPP=220.158;RPPR=139.813;RPR=0;RUN=1;SAF=100;SAP=220.158;SAR=0;SRF=63;SRP=139.813;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:121:43,78:43:1502:78:2671:-204.219,0,-99.0522 0/1:14:5,9:5:171:9:306:-23.6559,0,-11.512 0/1:28:15,13:15:507:13:443:-31.7678,0,-37.5231 dDocent_Contig_14260 8 . C G 107.723 . AB=0.24;ABP=17.6895;AC=2;AF=0.333333;AN=6;AO=6;CIGAR=1X;DP=38;DPB=38;DPRA=0.961538;EPP=16.0391;EPPR=70.3259;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=234;QR=1192;RO=31;RPL=0;RPP=16.0391;RPPR=70.3259;RPR=6;RUN=1;SAF=6;SAP=16.0391;SAR=0;SRF=31;SRP=70.3259;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:17:13,4:13:502:4:156:-9.29978,0,-40.411 0/1:8:6,2:6:230:2:78:-4.99523,0,-18.6581 0/0:13:12,0:12:460:0:0:0,-3.61236,-41.3599 dDocent_Contig_14261 70 . G A 44.4002 . AB=0.166667;ABP=26.1727;AC=2;AF=0.333333;AN=6;AO=4;CIGAR=1X;DP=36;DPB=36;DPRA=1;EPP=11.6962;EPPR=72.4974;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=160;QR=1289;RO=32;RPL=4;RPP=11.6962;RPPR=72.4974;RPR=0;RUN=1;SAF=4;SAP=11.6962;SAR=0;SRF=32;SRP=72.4974;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:12:12,0:12:477:0:0:0,-3.61236,-43.2778 0/1:13:11,2:11:445:2:78:-3.48939,0,-36.4923 0/1:11:9,2:9:367:2:82:-4.46835,0,-30.0839 dDocent_Contig_14262 46 . G A 221.838 . AB=0.117647;ABP=67.7713;AC=0;AF=0;AN=6;AO=6;CIGAR=1X1M1X;DP=54;DPB=54;DPRA=8.5;EPP=16.0391;EPPR=83.3548;GTI=0;LEN=1;MEANALT=2;MQM=60;MQMR=60;NS=3;NUMALT=2;ODDS=0;PAIRED=1;PAIREDR=0.756757;PAO=0;PQA=0;PQR=0;PRO=0;QA=230;QR=1463;RO=37;RPL=0;RPP=16.0391;RPPR=83.3548;RPR=6;RUN=1;SAF=6;SAP=16.0391;SAR=0;SRF=37;SRP=83.3548;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|0:3:3,0,0:3:121:0,0:0,0:0,-0.90309,-11.28,-0.90309,-11.28,-11.28 0|0:37:27,5,5:27:1063:5,5:190,195:-7.90574,-0.457871,-86.3986,0,-71.8757,-85.9491 0|0:14:7,1,6:7:279:1,6:40,241:-17.7529,-16.5653,-39.2388,0,-19.6797,-21.1687 dDocent_Contig_14263 119 . A G 72.0782 . AB=0.285714;ABP=8.59409;AC=1;AF=0.166667;AN=6;AO=4;CIGAR=1X;DP=24;DPB=24;DPRA=2.8;EPP=11.6962;EPPR=46.4397;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=140;QR=636;RO=20;RPL=0;RPP=11.6962;RPPR=46.4397;RPR=4;RUN=1;SAF=0;SAP=11.6962;SAR=4;SRF=0;SRP=46.4397;SRR=20;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:14:10,4:10:327:4:140:-8.73051,0,-25.5347 0/0:3:3,0:3:97:0:0:0,-0.90309,-9.05098 0/0:7:7,0:7:212:0:0:0,-2.10721,-19.3782 dDocent_Contig_14264 9 . A T 36.7915 . AB=0.333333;ABP=4.45795;AC=1;AF=0.166667;AN=6;AO=2;CIGAR=1M2D1M1X;DP=29;DPB=28.2;DPRA=0.521739;EPP=7.35324;EPPR=61.6401;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=77;QR=1040;RO=27;RPL=0;RPP=7.35324;RPPR=61.6401;RPR=2;RUN=1;SAF=2;SAP=7.35324;SAR=0;SRF=27;SRP=61.6401;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|0:14:14,0:14:541:0:0:0,-4.21442,-49.0359 0|0:9:9,0:9:347:0:0:0,-2.70927,-31.5898 0|1:6:4,2:4:152:2:77:-5.50296,0,-12.2437 dDocent_Contig_14265 24 . A C 103.309 . AB=0.166667;ABP=43.5445;AC=3;AF=0.5;AN=6;AO=7;CIGAR=1X;DP=42;DPB=42;DPRA=0;EPP=18.2106;EPPR=79.0118;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=284;QR=1406;RO=35;RPL=0;RPP=18.2106;RPPR=79.0118;RPR=7;RUN=1;SAF=7;SAP=18.2106;SAR=0;SRF=35;SRP=79.0118;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:23:18,5:18:723:5:203:-11.7294,0,-58.4721 0/1:12:11,1:11:446:1:40:-0.383319,0,-36.8832 0/1:7:6,1:6:237:1:41:-1.98736,0,-19.5939 dDocent_Contig_14266 12 . A T 336.246 . AB=0.419355;ABP=4.76149;AC=2;AF=0.333333;AN=6;AO=13;CIGAR=1X1M1X;DP=33;DPB=33;DPRA=7.75;EPP=31.2394;EPPR=46.4397;GTI=0;LEN=1;MEANALT=1;MQM=57.5385;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=0.846154;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=510;QR=789;RO=20;RPL=0;RPP=31.2394;RPPR=46.4397;RPR=13;RUN=1;SAF=13;SAP=31.2394;SAR=0;SRF=20;SRP=46.4397;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|1:16:8,8:8:312:8:310:-23.2827,0,-23.627 0|0:2:2,0:2:81:0:0:0,-0.60206,-7.68573 0|1:15:10,5:10:396:5:200:-13.8645,0,-31.4834 dDocent_Contig_14267 29 . C G 50.6243 . AB=0.136364;ABP=28.2783;AC=1;AF=0.166667;AN=6;AO=3;CIGAR=4M1X3M;DP=70;DPB=70.25;DPRA=0.578947;EPP=9.52472;EPPR=144.156;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=2;ODDS=0;PAIRED=0;PAIREDR=0.523077;PAO=0;PQA=0;PQR=0;PRO=0;QA=118;QR=2514;RO=65;RPL=0;RPP=9.52472;RPPR=144.156;RPR=3;RUN=1;SAF=3;SAP=9.52472;SAR=0;SRF=65;SRP=144.156;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|0:38:38,0,0:38:1471:0,0:0,0:0,-11.4391,-132.646,-11.4391,-132.646,-132.646 0|0:10:8,2,0:8:293:2,0:76,0:-4.20396,0,-23.7055,-6.6122,-24.3076,-30.5429 0|1:22:19,0,3:19:750:0,3:0,118:-4.37985,-10.0994,-71.8142,0,-62.1079,-61.2048 dDocent_Contig_14268 11 . T C 374.446 . AB=0.4;ABP=6.05036;AC=2;AF=0.333333;AN=6;AO=17;CIGAR=1X;DP=90;DPB=90;DPRA=0;EPP=39.9253;EPPR=161.528;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=0.986301;PAO=0;PQA=0;PQR=0;PRO=0;QA=686;QR=2754;RO=73;RPL=0;RPP=39.9253;RPPR=161.528;RPR=17;RUN=1;SAF=17;SAP=39.9253;SAR=0;SRF=73;SRP=161.528;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:55:52,3:52:1953:3:122:0,-5.18416,-164.64 0/1:17:14,3:14:538:3:120:-6.07039,0,-43.6469 0/1:18:7,11:7:263:11:444:-34.8971,0,-18.606 dDocent_Contig_14269 12 . T C 209.431 . AB=0.321429;ABP=10.7656;AC=2;AF=0.333333;AN=6;AO=11;CIGAR=1X;DP=61;DPB=61;DPRA=0;EPP=26.8965;EPPR=111.584;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=438;QR=1856;RO=50;RPL=0;RPP=26.8965;RPPR=111.584;RPR=11;RUN=1;SAF=11;SAP=26.8965;SAR=0;SRF=50;SRP=111.584;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:33:31,2:31:1149:2:81:0,-2.24826,-96.0281 0/1:10:8,2:8:294:2:82:-4.76938,0,-23.8002 0/1:18:11,7:11:413:7:275:-19.6964,0,-32.1018 dDocent_Contig_14270 8 . C T 31878.6 . AB=0.822603;ABP=1322.8;AC=3;AF=0.5;AN=6;AO=1201;CIGAR=1X;DP=1460;DPB=1460;DPRA=0;EPP=2610.95;EPPR=552.393;GTI=0;LEN=1;MEANALT=1.66667;MQM=44.2898;MQMR=51.3123;NS=3;NUMALT=1;ODDS=1.11022e-16;PAIRED=0.890092;PAIREDR=0.968379;PAO=0;PQA=0;PQR=0;PRO=0;QA=45953;QR=9730;RO=253;RPL=0;RPP=2610.95;RPPR=552.393;RPR=1201;RUN=1;SAF=1201;SAP=2610.95;SAR=0;SRF=253;SRP=552.393;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:872:138,730:138:5289:730:27902:-1955.91,0,-200.804 0/1:187:29,158:29:1110:158:6052:-426.642,0,-42.1553 0/1:401:86,313:86:3331:313:11999:-810.833,0,-169.876 dDocent_Contig_14271 96 . C T 197.071 . AB=0;ABP=0;AC=4;AF=1;AN=4;AO=6;CIGAR=1X1M1X;DP=6;DPB=6;DPRA=0;EPP=16.0391;EPPR=0;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=0;NS=2;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=208;QR=0;RO=0;RPL=6;RPP=16.0391;RPPR=0;RPR=0;RUN=1;SAF=6;SAP=16.0391;SAR=0;SRF=0;SRP=0;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 1|1:4:0,4:0:0:4:139:-12.8527,-1.20412,0 .:.:.:.:.:.:.:. 1|1:2:0,2:0:0:2:69:-6.55266,-0.60206,0 dDocent_Contig_14272 58 . G A 36.4032 . AB=0.2;ABP=14.7363;AC=1;AF=0.166667;AN=6;AO=3;CIGAR=1X;DP=36;DPB=36;DPRA=1.42857;EPP=9.52472;EPPR=74.6689;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=107;QR=1300;RO=33;RPL=3;RPP=9.52472;RPPR=74.6689;RPR=0;RUN=1;SAF=3;SAP=9.52472;SAR=0;SRF=33;SRP=74.6689;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:10:10,0:10:398:0:0:0,-3.0103,-36.1793 0/0:11:11,0:11:426:0:0:0,-3.31133,-38.6875 0/1:15:12,3:12:476:3:107:-5.46413,0,-38.6737 dDocent_Contig_14273 191 . A G 188.417 . AB=0.380952;ABP=5.59539;AC=3;AF=0.5;AN=6;AO=8;CIGAR=1X;DP=21;DPB=21;DPRA=0;EPP=20.3821;EPPR=31.2394;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=326;QR=526;RO=13;RPL=8;RPP=20.3821;RPPR=31.2394;RPR=0;RUN=1;SAF=0;SAP=20.3821;SAR=8;SRF=0;SRP=31.2394;SRR=13;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:7:6,1:6:244:1:41:-1.98736,0,-20.2316 0/1:9:6,3:6:241:3:121:-8.57072,0,-19.3559 0/1:5:1,4:1:41:4:164:-13.6447,0,-2.58942 dDocent_Contig_14274 96 . T C 232.937 . AB=0.392857;ABP=5.80219;AC=2;AF=0.333333;AN=6;AO=11;CIGAR=1X;DP=46;DPB=46;DPRA=0.777778;EPP=26.8965;EPPR=79.0118;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=1.73472e-18;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=384;QR=1181;RO=35;RPL=11;RPP=26.8965;RPPR=79.0118;RPR=0;RUN=1;SAF=11;SAP=26.8965;SAR=0;SRF=35;SRP=79.0118;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:24:15,9:15:519:9:314:-21.3732,0,-39.814 0/1:4:2,2:2:67:2:70:-5.44328,0,-5.15892 0/0:18:18,0:18:595:0:0:0,-5.41854,-53.8611 dDocent_Contig_14275 13 . C T 107.347 . AB=0.0724638;ABP=112.56;AC=0;AF=0;AN=6;AO=5;CIGAR=2X2M3D1X2M2I10M2X2M2D2M2X1M1X;DP=74;DPB=72.3438;DPRA=6.9;EPP=13.8677;EPPR=65.983;GTI=0;LEN=1;MEANALT=9.5;MQM=24;MQMR=60;NS=3;NUMALT=9;ODDS=0;PAIRED=0;PAIREDR=0.413793;PAO=0;PQA=0;PQR=0;PRO=0;QA=120;QR=1118;RO=29;RPL=0;RPP=13.8677;RPPR=65.983;RPR=5;RUN=1;SAF=5;SAP=13.8677;SAR=0;SRF=29;SRP=65.983;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|0:44:22,2,0,3,0,1,3,0,0,0:22:847:2,0,3,0,1,3,0,0,0:48,0,122,0,35,107,0,0,0:-3.46122,-6.91278,-75.9037,-10.0839,-76.5057,-79.6776,0,-66.4371,-69.6088,-68.7057,-10.0839,-76.5057,-79.6776,-69.6088,-79.6776,-7.2326,-73.6576,-76.8295,-66.7605,-76.8295,-76.5284,-1.35012,-67.7832,-70.9547,-60.8853,-70.9547,-68.1065,-70.0517,-10.0839,-76.5057,-79.6776,-69.6088,-79.6776,-76.8295,-70.9547,-79.6776,-10.0839,-76.5057,-79.6776,-69.6088,-79.6776,-76.8295,-70.9547,-79.6776,-79.6776,-10.0839,-76.5057,-79.6776,-69.6088,-79.6776,-76.8295,-70.9547,-79.6776,-79.6776,-79.6776 0|0:5:2,0,0,0,0,0,0,0,0,0:2:79:0,0,0,0,0,0,0,0,0:0,0,0,0,0,0,0,0,0:0,-0.60206,-7.15954,-0.60206,-7.15954,-7.15954,-0.60206,-7.15954,-7.15954,-7.15954,-0.60206,-7.15954,-7.15954,-7.15954,-7.15954,-0.60206,-7.15954,-7.15954,-7.15954,-7.15954,-7.15954,-0.60206,-7.15954,-7.15954,-7.15954,-7.15954,-7.15954,-7.15954,-0.60206,-7.15954,-7.15954,-7.15954,-7.15954,-7.15954,-7.15954,-7.15954,-0.60206,-7.15954,-7.15954,-7.15954,-7.15954,-7.15954,-7.15954,-7.15954,-7.15954,-0.60206,-7.15954,-7.15954,-7.15954,-7.15954,-7.15954,-7.15954,-7.15954,-7.15954,-7.15954 0|0:25:5,3,2,0,3,2,0,3,4,2:5:192:3,2,0,3,2,0,3,4,2:72,80,0,120,68,0,116,150,82:-10.7821,-7.54702,-22.4048,-5.69254,-16.7162,-20.8581,-12.2872,-23.3079,-21.4601,-28.0534,-2.39479,-13.4203,-11.569,-18.1633,-17.2602,-6.77335,-17.7964,-15.9461,-22.5395,-12.6492,-21.9374,-12.2872,-23.3079,-21.4601,-28.0534,-18.1633,-22.5395,-28.0534,-2.75623,-13.7815,-11.9301,-18.5242,-8.63278,-13.0103,-18.5242,-17.6211,0,-11.0269,-9.17391,-15.7681,-5.8765,-10.2544,-15.7681,-6.23781,-14.5639,-5.51344,-16.5373,-14.6873,-21.2813,-11.39,-15.7672,-21.2813,-11.7511,-8.99487,-20.6792 dDocent_Contig_14276 11 . 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AB=0.259259;ABP=16.6021;AC=2;AF=0.333333;AN=6;AO=8;CIGAR=1X;DP=39;DPB=39;DPRA=0;EPP=20.3821;EPPR=70.3259;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=3.46945e-18;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=278;QR=1068;RO=31;RPL=0;RPP=20.3821;RPPR=70.3259;RPR=8;RUN=1;SAF=0;SAP=20.3821;SAR=8;SRF=0;SRP=70.3259;SRR=31;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:21:17,4:17:586:4:139:-6.53106,0,-46.7437 0/1:6:3,3:3:105:3:104:-7.89691,0,-7.98998 0/0:12:11,1:11:377:1:35:0,-0.113731,-30.7619 dDocent_Contig_14279 10 . G T 317.431 . AB=0.180952;ABP=95.8459;AC=3;AF=0.5;AN=6;AO=19;CIGAR=1X;DP=105;DPB=105;DPRA=0;EPP=44.2683;EPPR=189.757;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=750;QR=3342;RO=86;RPL=0;RPP=44.2683;RPPR=189.757;RPR=19;RUN=1;SAF=19;SAP=44.2683;SAR=0;SRF=86;SRP=189.757;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:30:21,9:21:832:9:346:-22.4606,0,-66.16 0/1:43:36,7:36:1375:7:281:-12.7168,0,-111.065 0/1:32:29,3:29:1135:3:123:-1.83183,0,-92.8005 dDocent_Contig_14280 30 . A T 217.425 . AB=0.421053;ABP=4.03889;AC=1;AF=0.166667;AN=6;AO=8;CIGAR=1X;DP=26;DPB=26;DPRA=5.42857;EPP=20.3821;EPPR=42.0968;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=318;QR=715;RO=18;RPL=0;RPP=20.3821;RPPR=42.0968;RPR=8;RUN=1;SAF=8;SAP=20.3821;SAR=0;SRF=18;SRP=42.0968;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:19:11,8:11:439:8:318:-23.265,0,-34.1455 0/0:2:2,0:2:82:0:0:0,-0.60206,-7.77968 0/0:5:5,0:5:194:0:0:0,-1.50515,-17.8314 dDocent_Contig_14282 40 . C G 1178.23 . AB=0.461538;ABP=4.17955;AC=3;AF=0.5;AN=6;AO=42;CIGAR=1X4M;DP=91;DPB=91;DPRA=0;EPP=62.7775;EPPR=102.898;GTI=0;LEN=1;MEANALT=1.33333;MQM=60;MQMR=60;NS=3;NUMALT=2;ODDS=0;PAIRED=0.904762;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=1658;QR=1766;RO=46;RPL=4;RPP=62.7775;RPPR=102.898;RPR=38;RUN=1;SAF=42;SAP=94.2121;SAR=0;SRF=46;SRP=102.898;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|1:33:16,0,17:16:636:0,17:0,659:-49.6894,-54.5059,-106.874,0,-52.7603,-47.6428 0|1:32:18,3,11:18:669:3,11:118,435:-30.3804,-26.0932,-79.9164,0,-45.0133,-51.4112 0|1:26:12,0,14:12:461:0,14:0,564:-43.2764,-46.8887,-84.715,0,-38.2186,-34.0042 dDocent_Contig_14283 59 . A G 332.722 . AB=0.325581;ABP=14.3727;AC=3;AF=0.5;AN=6;AO=14;CIGAR=1X;DP=43;DPB=43;DPRA=0;EPP=33.4109;EPPR=65.983;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=0.827586;PAO=0;PQA=0;PQR=0;PRO=0;QA=562;QR=1130;RO=29;RPL=14;RPP=33.4109;RPPR=65.983;RPR=0;RUN=1;SAF=14;SAP=33.4109;SAR=0;SRF=29;SRP=65.983;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:20:15,5:15:578:5:202:-12.5415,0,-46.3306 0/1:2:1,1:1:38:1:40:-3.39362,0,-3.19521 0/1:21:13,8:13:514:8:320:-22.8451,0,-40.2828 dDocent_Contig_14284 15 . T C 4358.22 . AB=0.694175;ABP=70.4735;AC=3;AF=0.5;AN=6;AO=143;CIGAR=1X1M2X;DP=206;DPB=206;DPRA=0;EPP=313.531;EPPR=137.642;GTI=0;LEN=1;MEANALT=1.33333;MQM=58.6014;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=0;PAIREDR=0.419355;PAO=0;PQA=0;PQR=0;PRO=0;QA=5592;QR=2401;RO=62;RPL=0;RPP=313.531;RPPR=137.642;RPR=143;RUN=1;SAF=143;SAP=313.531;SAR=0;SRF=62;SRP=137.642;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|1:140:37,102:37:1431:102:3974:-315.094,0,-86.8365 0|1:12:6,6:6:232:6:237:-18.0911,0,-17.6366 0|1:54:19,35:19:738:35:1381:-108.16,0,-50.4933 dDocent_Contig_14285 26 . T A 1741.31 . AB=0.531532;ABP=3.96888;AC=3;AF=0.5;AN=6;AO=59;CIGAR=1X;DP=111;DPB=111;DPRA=0;EPP=131.127;EPPR=115.927;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=2357;QR=2083;RO=52;RPL=0;RPP=131.127;RPPR=115.927;RPR=59;RUN=1;SAF=59;SAP=131.127;SAR=0;SRF=52;SRP=115.927;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:52:26,26:26:1047:26:1041:-78.3277,0,-78.8688 0/1:34:11,23:11:443:23:935:-74.2163,0,-29.9907 0/1:25:15,10:15:593:10:381:-27.1096,0,-46.1823 dDocent_Contig_14286 40 . A C 499.331 . AB=0.514286;ABP=3.07234;AC=2;AF=0.333333;AN=6;AO=18;CIGAR=1X;DP=78;DPB=78;DPRA=0.406977;EPP=42.0968;EPPR=133.299;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=703;QR=2287;RO=60;RPL=0;RPP=42.0968;RPPR=133.299;RPR=18;RUN=1;SAF=18;SAP=42.0968;SAR=0;SRF=60;SRP=133.299;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:43:43,0:43:1645:0:0:0,-12.9443,-148.314 0/1:24:11,13:11:415:13:506:-38.661,0,-30.4723 0/1:11:6,5:6:227:5:197:-14.7951,0,-17.4808 dDocent_Contig_14287 29 . T C 240.714 . AB=0.357143;ABP=10.4553;AC=2;AF=0.333333;AN=6;AO=15;CIGAR=1X;DP=46;DPB=46;DPRA=5.25;EPP=4.31318;EPPR=51.9408;GTI=0;LEN=1;MEANALT=1.5;MQM=30.9333;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=0;PAIREDR=0.8;PAO=0;PQA=0;PQR=0;PRO=0;QA=575;QR=1055;RO=30;RPL=0;RPP=35.5824;RPPR=68.1545;RPR=15;RUN=1;SAF=9;SAP=4.31318;SAR=6;SRF=28;SRP=51.9408;SRR=2;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:22:13,9:13:473:9:348:-19.2147,0,-36.2857 0/1:20:13,6:13:444:6:227:-8.37945,0,-34.4683 0/0:4:4,0:4:138:0:0:0,-1.20412,-12.7601 dDocent_Contig_14288 69 . C T 145.41 . AB=0.4;ABP=4.31318;AC=1;AF=0.166667;AN=6;AO=6;CIGAR=1X;DP=61;DPB=61;DPRA=0.652174;EPP=16.0391;EPPR=122.441;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=228;QR=2131;RO=55;RPL=6;RPP=16.0391;RPPR=122.441;RPR=0;RUN=1;SAF=6;SAP=16.0391;SAR=0;SRF=55;SRP=122.441;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:41:41,0:41:1611:0:0:0,-12.3422,-145.229 0/0:5:5,0:5:158:0:0:0,-1.50515,-14.5295 0/1:15:9,6:9:362:6:228:-16.3649,0,-28.4282 dDocent_Contig_14289 20 . G A 1404.7 . AB=0.335443;ABP=40.1727;AC=2;AF=0.333333;AN=6;AO=53;CIGAR=1X;DP=180;DPB=180;DPRA=3.59091;EPP=118.098;EPPR=278.787;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=2122;QR=5022;RO=127;RPL=0;RPP=118.098;RPPR=278.787;RPR=53;RUN=1;SAF=53;SAP=118.098;SAR=0;SRF=127;SRP=278.787;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:117:79,38:79:3112:38:1528:-102.539,0,-244.935 0/0:22:22,0:22:871:0:0:0,-6.62266,-78.6995 0/1:41:26,15:26:1039:15:594:-41.4539,0,-81.4592 dDocent_Contig_14290 13 . G A 98.646 . AB=0.363636;ABP=4.78696;AC=1;AF=0.25;AN=4;AO=4;CIGAR=1X;DP=24;DPB=24;DPRA=0.846154;EPP=11.6962;EPPR=46.4397;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=2;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=161;QR=793;RO=20;RPL=0;RPP=11.6962;RPPR=46.4397;RPR=4;RUN=1;SAF=4;SAP=11.6962;SAR=0;SRF=20;SRP=46.4397;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL ./.:.:.:.:.:.:.:. 0/1:11:7,4:7:269:4:161:-11.5636,0,-21.2568 0/0:13:13,0:13:524:0:0:0,-3.91339,-47.5069 dDocent_Contig_14291 17 . T C 200.516 . AB=0.212766;ABP=36.6912;AC=1;AF=0.166667;AN=6;AO=12;CIGAR=1X;DP=90;DPB=90;DPRA=0;EPP=29.068;EPPR=172.385;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=58.4872;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=0.512821;PAO=0;PQA=0;PQR=0;PRO=0;QA=475;QR=3082;RO=78;RPL=0;RPP=29.068;RPPR=172.385;RPR=12;RUN=1;SAF=12;SAP=29.068;SAR=0;SRF=78;SRP=172.385;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:47:37,10:37:1453:10:393:-21.5743,0,-113.985 0/0:17:16,1:16:634:1:41:0,-1.02294,-52.8155 0/0:26:25,1:25:995:1:41:0,-3.73221,-85.7521 dDocent_Contig_14292 23 . G A 78.16 . AB=0.210526;ABP=16.8392;AC=1;AF=0.166667;AN=6;AO=4;CIGAR=1X;DP=34;DPB=34;DPRA=2.53333;EPP=11.6962;EPPR=68.1545;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=0.933333;PAO=0;PQA=0;PQR=0;PRO=0;QA=163;QR=1201;RO=30;RPL=0;RPP=11.6962;RPPR=68.1545;RPR=4;RUN=1;SAF=4;SAP=11.6962;SAR=0;SRF=30;SRP=68.1545;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:19:15,4:15:605:4:163:-9.33886,0,-49.0668 0/0:6:6,0:6:237:0:0:0,-1.80618,-21.7024 0/0:9:9,0:9:359:0:0:0,-2.70927,-32.6722 dDocent_Contig_14293 105 . N G 60.7974 . AB=0;ABP=0;AC=2;AF=1;AN=2;AO=2;CIGAR=3X;DP=2;DPB=2;DPRA=0;EPP=7.35324;EPPR=0;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=0;NS=1;NUMALT=1;ODDS=5.99146;PAIRED=1;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=64;QR=0;RO=0;RPL=0;RPP=7.35324;RPPR=0;RPR=2;RUN=1;SAF=0;SAP=7.35324;SAR=2;SRF=0;SRP=0;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 1|1:2:0,2:0:0:2:64:-6.07866,-0.60206,0 .:.:.:.:.:.:.:. .:.:.:.:.:.:.:. dDocent_Contig_14294 20 . T G 1555.22 . AB=0.447154;ABP=5.99387;AC=3;AF=0.5;AN=6;AO=55;CIGAR=1X;DP=123;DPB=123;DPRA=0;EPP=122.441;EPPR=148.499;GTI=0;LEN=1;MEANALT=1.33333;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=2188;QR=2632;RO=67;RPL=0;RPP=122.441;RPPR=148.499;RPR=55;RUN=1;SAF=55;SAP=122.441;SAR=0;SRF=67;SRP=148.499;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:85:50,34:50:1956:34:1338:-95.2714,0,-150.848 0/1:24:14,10:14:557:10:400:-29.1326,0,-43.2445 0/1:14:3,11:3:119:11:450:-36.6414,0,-6.88059 dDocent_Contig_14295 75 . C A 770.715 . AB=0.5;ABP=3.0103;AC=3;AF=0.5;AN=6;AO=28;CIGAR=1X;DP=56;DPB=56;DPRA=0;EPP=63.8115;EPPR=63.8115;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=1093;QR=1097;RO=28;RPL=28;RPP=63.8115;RPPR=63.8115;RPR=0;RUN=1;SAF=28;SAP=63.8115;SAR=0;SRF=28;SRP=63.8115;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:34:14,20:14:550:20:791:-61.2778,0,-39.5983 0/1:3:2,1:2:79:1:39:-2.99347,0,-6.59454 0/1:19:12,7:12:468:7:263:-18.3086,0,-36.753 dDocent_Contig_14296 17 . C T 81.0245 . AB=0.75;ABP=5.18177;AC=1;AF=0.166667;AN=6;AO=3;CIGAR=1X;DP=32;DPB=32;DPRA=0.285714;EPP=9.52472;EPPR=65.983;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=119;QR=1160;RO=29;RPL=0;RPP=9.52472;RPPR=65.983;RPR=3;RUN=1;SAF=3;SAP=9.52472;SAR=0;SRF=29;SRP=65.983;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:21:21,0:21:838:0:0:0,-6.32163,-75.7317 0/1:4:1,3:1:38:3:119:-9.89089,0,-2.59315 0/0:7:7,0:7:284:0:0:0,-2.10721,-25.934 dDocent_Contig_14297 17 . C T 239.768 . AB=0.214286;ABP=22.8638;AC=1;AF=0.166667;AN=6;AO=6;CIGAR=1M1X2M1X2M1X6M1I3M1X2M1X2M1X;DP=70;DPB=68.0417;DPRA=0;EPP=16.0391;EPPR=89.8692;GTI=0;LEN=1;MEANALT=3;MQM=24;MQMR=60;NS=3;NUMALT=5;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=144;QR=1570;RO=40;RPL=0;RPP=16.0391;RPPR=89.8692;RPR=6;RUN=1;SAF=6;SAP=16.0391;SAR=0;SRF=40;SRP=89.8692;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|0:37:21,3,4,5,3,0:21:823:3,4,5,3,0:117,155,194,117,0:-9.61819,-6.40665,-73.1838,-3.31099,-61.4579,-69.7867,0,-58.1477,-55.0517,-66.1755,-6.32206,-64.4698,-61.3737,-58.0635,-73.0997,-15.9398,-74.0869,-70.9908,-67.6807,-74.0028,-83.6199 0|0:5:0,0,1,4,0,0:0:0:0,1,4,0,0:0,39,153,0,0:-16.1162,-16.1162,-16.1162,-12.9362,-12.9362,-12.6352,-3.56578,-3.56578,0,-2.36166,-16.1162,-16.1162,-12.9362,-3.56578,-16.1162,-16.1162,-16.1162,-12.9362,-3.56578,-16.1162,-16.1162 0|1:28:19,2,0,0,0,6:19:747:2,0,0,0,6:77,0,0,0,144:-3.70367,-3.11822,-64.0795,-9.42324,-64.6816,-70.9555,-9.42324,-64.6816,-70.9555,-70.9555,-9.42324,-64.6816,-70.9555,-70.9555,-70.9555,0,-55.1905,-61.4612,-61.4612,-61.4612,-59.655 dDocent_Contig_14298 126 . A G 114.929 . AB=0.195122;ABP=36.112;AC=1;AF=0.166667;AN=6;AO=8;CIGAR=1X;DP=63;DPB=63;DPRA=3.72727;EPP=20.3821;EPPR=122.441;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=278;QR=1828;RO=55;RPL=0;RPP=20.3821;RPPR=122.441;RPR=8;RUN=1;SAF=0;SAP=20.3821;SAR=8;SRF=0;SRP=122.441;SRR=55;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:41:33,8:33:1076:8:278:-13.0157,0,-84.7934 0/0:5:5,0:5:174:0:0:0,-1.50515,-16.002 0/0:17:17,0:17:578:0:0:0,-5.11751,-52.342 dDocent_Contig_14299 108 . A G 42.4722 . AB=0.533333;ABP=3.87889;AC=1;AF=0.166667;AN=6;AO=84;CIGAR=1X;DP=185;DPB=185;DPRA=0;EPP=185.414;EPPR=220.158;GTI=0;LEN=1;MEANALT=1.33333;MQM=6.59524;MQMR=24.16;NS=3;NUMALT=1;ODDS=0;PAIRED=0;PAIREDR=0.18;PAO=0;PQA=0;PQR=0;PRO=0;QA=2847;QR=3440;RO=100;RPL=0;RPP=185.414;RPPR=220.158;RPR=84;RUN=1;SAF=0;SAP=185.414;SAR=84;SRF=0;SRP=220.158;SRR=100;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:71:44,27:44:1507:27:930:0,-8.8208,-66.2157 0/0:24:15,9:15:512:9:300:0,-3.12885,-25.2905 0/1:90:41,48:41:1421:48:1617:-6.0711,0,-41.3763 dDocent_Contig_14302 7 . A C 84.0269 . AB=0.125;ABP=100.727;AC=1;AF=0.166667;AN=6;AO=10;CIGAR=1X;DP=123;DPB=123;DPRA=3.72093;EPP=24.725;EPPR=248.387;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=3.46945e-18;PAIRED=1;PAIREDR=0.884956;PAO=0;PQA=0;PQR=0;PRO=0;QA=374;QR=4325;RO=113;RPL=0;RPP=24.725;RPPR=248.387;RPR=10;RUN=1;SAF=10;SAP=24.725;SAR=0;SRF=113;SRP=248.387;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:80:70,10:70:2686:10:374:-9.92557,0,-217.848 0/0:11:11,0:11:414:0:0:0,-3.31133,-37.6092 0/0:32:32,0:32:1225:0:0:0,-9.63296,-110.545 dDocent_Contig_14303 69 . C A 33.9913 . AB=0.113208;ABP=71.8828;AC=2;AF=0.333333;AN=6;AO=6;CIGAR=2X3M2X;DP=53;DPB=53;DPRA=0;EPP=16.0391;EPPR=94.2121;GTI=0;LEN=1;MEANALT=2;MQM=41.6667;MQMR=60;NS=3;NUMALT=2;ODDS=0;PAIRED=0.666667;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=224;QR=1506;RO=42;RPL=6;RPP=16.0391;RPPR=94.2121;RPR=0;RUN=1;SAF=6;SAP=16.0391;SAR=0;SRF=42;SRP=94.2121;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|1:40:33,4,2:33:1192:4,2:149,74:-0.332266,0,-96.0837,-4.19955,-91.2333,-100.918 0|1:2:1,1,0:1:36:1,0:39,0:-3.28717,0,-2.99621,-3.5882,-3.29724,-6.51107 0|0:11:8,1,2:8:278:1,2:36,72:-3.6067,-5.03902,-27.3297,0,-21.7534,-22.1754 dDocent_Contig_14304 8 . C T 509.555 . AB=0.22807;ABP=76.2308;AC=3;AF=0.5;AN=6;AO=26;CIGAR=1X;DP=114;DPB=114;DPRA=0;EPP=59.4686;EPPR=194.1;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=0.943182;PAO=0;PQA=0;PQR=0;PRO=0;QA=997;QR=3390;RO=88;RPL=0;RPP=59.4686;RPPR=194.1;RPR=26;RUN=1;SAF=26;SAP=59.4686;SAR=0;SRF=88;SRP=194.1;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:59:42,17:42:1617:17:658:-41.7963,0,-128.033 0/1:13:9,4:9:342:4:146:-9.58389,0,-27.2229 0/1:42:37,5:37:1431:5:193:-5.0981,0,-116.425 dDocent_Contig_14306 10 . C T 64.3832 . AB=0.16129;ABP=33.9012;AC=2;AF=0.333333;AN=6;AO=5;CIGAR=1X2M1X;DP=40;DPB=40;DPRA=1.72222;EPP=13.8677;EPPR=76.8404;GTI=0;LEN=1;MEANALT=1.5;MQM=53;MQMR=59.4118;NS=3;NUMALT=1;ODDS=3.46945e-18;PAIRED=0;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=193;QR=1336;RO=34;RPL=0;RPP=13.8677;RPPR=76.8404;RPR=5;RUN=1;SAF=5;SAP=13.8677;SAR=0;SRF=34;SRP=76.8404;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|1:21:17,4:17:663:4:155:-7.95297,0,-53.6821 0|1:10:8,1:8:318:1:38:-0.758562,0,-25.7336 0|0:9:9,0:9:355:0:0:0,-2.70927,-32.3127 dDocent_Contig_14307 26 . A C 2088.52 . AB=0.026738;ABP=730.605;AC=0;AF=0;AN=6;AO=10;CIGAR=1X3M3X2M3X;DP=490;DPB=490;DPRA=0;EPP=24.725;EPPR=188.309;GTI=0;LEN=1;MEANALT=35.5;MQM=28.5;MQMR=59.9444;NS=3;NUMALT=5;ODDS=0;PAIRED=0;PAIREDR=0.194444;PAO=0;PQA=0;PQR=0;PRO=0;QA=398;QR=4202;RO=108;RPL=0;RPP=24.725;RPPR=144.88;RPR=10;RUN=1;SAF=10;SAP=24.725;SAR=0;SRF=102;SRP=188.309;SRR=6;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|0:165:38,9,26,15,12,6:38:1490:9,26,15,12,6:359,1000,572,459,237:-70.6338,-63.349,-183.18,0,-103.822,-114.719,-35.5327,-139.352,-76.0065,-153.561,-66.3189,-170.133,-106.791,-142.32,-185.244,-62.5781,-166.396,-103.051,-138.582,-169.363,-183.314 0|0:209:39,1,5,10,13,36:39:1516:1,5,10,13,36:39,200,395,520,1418:-94.4159,-103.266,-227.535,-89.68,-211.36,-212.745,-73.8431,-195.523,-181.938,-195.403,-67.5899,-189.27,-175.684,-159.847,-188.247,0,-121.68,-108.094,-92.2577,-86.0045,-113.733 0|0:116:31,0,2,18,9,7:31:1196:0,2,18,9,7:0,82,715,347,270:-49.3251,-58.6571,-156.879,-51.8873,-150.11,-149.508,0,-98.2289,-91.4594,-92.8103,-43.6433,-141.862,-135.093,-83.2133,-139.153,-36.5459,-134.77,-128.001,-76.1185,-119.753,-132.663 dDocent_Contig_14308 8 . C A 117.411 . AB=0.125;ABP=42.0968;AC=4;AF=0.666667;AN=6;AO=8;CIGAR=2X3M1X;DP=37;DPB=37;DPRA=0;EPP=20.3821;EPPR=59.4686;GTI=0;LEN=1;MEANALT=2;MQM=32.5;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=0;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=315;QR=1011;RO=26;RPL=0;RPP=20.3821;RPPR=59.4686;RPR=8;RUN=1;SAF=8;SAP=20.3821;SAR=0;SRF=26;SRP=59.4686;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|1:17:14,2:14:552:2:79:-0.75798,0,-45.0422 0|1:15:12,2:12:459:2:78:-1.69066,0,-37.3116 1|1:5:0,4:0:0:4:158:-11.4921,-1.20412,0 dDocent_Contig_14309 7 . A G 53.6063 . AB=0.315789;ABP=8.61041;AC=2;AF=0.333333;AN=6;AO=6;CIGAR=1X;DP=37;DPB=37;DPRA=0.527778;EPP=16.0391;EPPR=70.3259;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=156;QR=1180;RO=31;RPL=0;RPP=16.0391;RPPR=70.3259;RPR=6;RUN=1;SAF=6;SAP=16.0391;SAR=0;SRF=31;SRP=70.3259;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:18:18,0:18:685:0:0:0,-5.41854,-61.9835 0/1:5:3,2:3:108:2:70:-5.1416,0,-8.56898 0/1:14:10,4:10:387:4:86:-3.73917,0,-30.9731 dDocent_Contig_14312 100 . N A 174.786 . AB=0;ABP=0;AC=6;AF=1;AN=6;AO=5;CIGAR=2X9I6X;DP=5;DPB=10.625;DPRA=0;EPP=13.8677;EPPR=0;GTI=0;LEN=1;MEANALT=1;MQM=52.2;MQMR=0;NS=3;NUMALT=1;ODDS=1.69407e-21;PAIRED=0.8;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=193;QR=0;RO=0;RPL=0;RPP=13.8677;RPPR=0;RPR=5;RUN=1;SAF=5;SAP=13.8677;SAR=0;SRF=0;SRP=0;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 1|1:1:0,1:0:0:1:39:-2.38653,-0.30103,0 1|1:3:0,3:0:0:3:116:-10.8154,-0.90309,0 1|1:1:0,1:0:0:1:38:-3.79727,-0.30103,0 dDocent_Contig_14313 7 . A C 86.791 . AB=0.166667;ABP=37.7539;AC=1;AF=0.166667;AN=6;AO=9;CIGAR=1X;DP=96;DPB=96;DPRA=3.86364;EPP=22.5536;EPPR=189.757;GTI=0;LEN=1;MEANALT=1.5;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=0.988372;PAO=0;PQA=0;PQR=0;PRO=0;QA=348;QR=3288;RO=86;RPL=0;RPP=22.5536;RPPR=189.757;RPR=9;RUN=1;SAF=9;SAP=22.5536;SAR=0;SRF=86;SRP=189.757;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:49:45,3:45:1727:3:115:0,-3.9853,-145 0/0:11:11,0:11:413:0:0:0,-3.31133,-37.5196 0/1:36:30,6:30:1148:6:233:-10.503,0,-92.7829 dDocent_Contig_14314 23 . G T 287.448 . AB=0.230769;ABP=43.9342;AC=3;AF=0.5;AN=6;AO=15;CIGAR=1X;DP=65;DPB=65;DPRA=0;EPP=35.5824;EPPR=109.412;GTI=0;LEN=1;MEANALT=1.33333;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=584;QR=1964;RO=49;RPL=0;RPP=35.5824;RPPR=109.412;RPR=15;RUN=1;SAF=15;SAP=35.5824;SAR=0;SRF=49;SRP=109.412;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:22:19,3:19:771:3:120:-4.56465,0,-63.0871 0/1:16:8,8:8:313:8:301:-22.6243,0,-23.7141 0/1:27:22,4:22:880:4:163:-7.07825,0,-71.5818 dDocent_Contig_14315 102 . N C 1272.06 . AB=0.694444;ABP=14.8328;AC=6;AF=1;AN=6;AO=43;CIGAR=6X5I2M;DP=55;DPB=89.25;DPRA=0;EPP=96.3836;EPPR=0;GTI=0;LEN=1;MEANALT=2.66667;MQM=39.8372;MQMR=0;NS=3;NUMALT=3;ODDS=0;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=1377;QR=0;RO=0;RPL=0;RPP=96.3836;RPPR=0;RPR=43;RUN=1;SAF=43;SAP=96.3836;SAR=0;SRF=0;SRP=0;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 1|1:19:0,0,0,18:0:0:0,0,18:0,0,579:-49.6624,-49.6624,-49.6624,-49.6624,-49.6624,-49.6624,-5.41854,-5.41854,-5.41854,0 1|1:22:0,2,4,15:0:0:2,4,15:64,142,477:-47.371,-42.2603,-41.6582,-36.2202,-31.1084,-35.0161,-11.1598,-6.05507,0,-6.64432 1|1:14:0,0,4,10:0:0:0,4,10:0,119,321:-33.6954,-33.6954,-33.6954,-24.7542,-24.7542,-23.55,-9.22984,-9.22984,0,-6.21954 dDocent_Contig_14316 51 . A T 34.4002 . AB=0.333333;ABP=4.45795;AC=1;AF=0.166667;AN=6;AO=2;CIGAR=1X;DP=38;DPB=38;DPRA=0.375;EPP=7.35324;EPPR=81.1833;GTI=0;LEN=1;MEANALT=1;MQM=42;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=0;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=78;QR=1380;RO=36;RPL=2;RPP=7.35324;RPPR=81.1833;RPR=0;RUN=1;SAF=2;SAP=7.35324;SAR=0;SRF=36;SRP=81.1833;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:15:15,0:15:606:0:0:0,-4.51545,-54.8784 0/1:6:4,2:4:117:2:78:-5.26377,0,-9.00902 0/0:17:17,0:17:657:0:0:0,-5.11751,-59.4621 dDocent_Contig_14318 31 . A C 377.914 . AB=0.45;ABP=3.87889;AC=3;AF=0.5;AN=6;AO=18;CIGAR=1X;DP=40;DPB=40;DPRA=0;EPP=42.0968;EPPR=50.7827;GTI=0;LEN=1;MEANALT=1;MQM=33.2222;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=0;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=726;QR=871;RO=22;RPL=0;RPP=42.0968;RPPR=50.7827;RPR=18;RUN=1;SAF=18;SAP=42.0968;SAR=0;SRF=22;SRP=50.7827;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:25:9,16:9:356:16:644:-39.2802,0,-24.8767 0/1:7:6,1:6:238:1:41:-1.21381,0,-19.6858 0/1:8:7,1:7:277:1:41:-0.912779,0,-22.8915 dDocent_Contig_14319 167 . C G 36.6077 . AB=0.285714;ABP=5.80219;AC=1;AF=0.166667;AN=6;AO=2;CIGAR=1X;DP=31;DPB=31;DPRA=0.583333;EPP=7.35324;EPPR=65.983;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=0.931034;PAO=0;PQA=0;PQR=0;PRO=0;QA=80;QR=1127;RO=29;RPL=2;RPP=7.35324;RPPR=65.983;RPR=0;RUN=1;SAF=0;SAP=7.35324;SAR=2;SRF=0;SRP=65.983;SRR=29;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:16:16,0:16:606:0:0:0,-4.81648,-54.873 0/1:7:5,2:5:199:2:80:-5.48458,0,-16.1817 0/0:8:8,0:8:322:0:0:0,-2.40824,-29.3483 dDocent_Contig_14321 65 . A G 116.863 . AB=0.222222;ABP=21.1059;AC=1;AF=0.166667;AN=6;AO=6;CIGAR=1X;DP=42;DPB=42;DPRA=3.6;EPP=16.0391;EPPR=81.1833;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=233;QR=1336;RO=36;RPL=6;RPP=16.0391;RPPR=81.1833;RPR=0;RUN=1;SAF=6;SAP=16.0391;SAR=0;SRF=36;SRP=81.1833;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:27:21,6:21:795:6:233:-13.209,0,-63.7342 0/0:12:12,0:12:426:0:0:0,-3.61236,-38.6646 0/0:3:3,0:3:115:0:0:0,-0.90309,-10.7249 dDocent_Contig_14322 18 . C T 1531.27 . AB=0.116279;ABP=112.998;AC=4;AF=0.666667;AN=6;AO=10;CIGAR=2M1D1X;DP=86;DPB=71.75;DPRA=0;EPP=24.725;EPPR=65.983;GTI=0;LEN=1;MEANALT=2;MQM=56.1;MQMR=60;NS=3;NUMALT=2;ODDS=6.93889e-18;PAIRED=1;PAIREDR=0.0344828;PAO=0;PQA=0;PQR=0;PRO=0;QA=400;QR=1150;RO=29;RPL=0;RPP=24.725;RPPR=65.983;RPR=10;RUN=1;SAF=10;SAP=24.725;SAR=0;SRF=29;SRP=65.983;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|1:43:14,27,2:14:552:27,2:1067,73:-83.6163,0,-37.3145,-81.8954,-39.5087,-126.709 1|1:8:1,2,5:1:34:2,5:81,204:-20.31,-13.9314,-16.0769,-3.98579,0,-5.21709 0|1:35:14,18,3:14:564:18,3:716,123:-54.7233,0,-41.0621,-48.7886,-36.332,-94.3741 dDocent_Contig_14323 30 . G C 228.216 . AB=0.409091;ABP=4.58955;AC=2;AF=0.333333;AN=6;AO=10;CIGAR=1X;DP=36;DPB=36;DPRA=0;EPP=24.725;EPPR=59.4686;GTI=0;LEN=1;MEANALT=1;MQM=55.5;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=0.1;PAIREDR=0.884615;PAO=0;PQA=0;PQR=0;PRO=0;QA=400;QR=1033;RO=26;RPL=0;RPP=24.725;RPPR=59.4686;RPR=10;RUN=1;SAF=10;SAP=24.725;SAR=0;SRF=26;SRP=59.4686;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:14:13,1:13:517:1:40:0,-0.993393,-43.6545 0/1:4:1,3:1:38:3:121:-9.84419,0,-2.59315 0/1:18:12,6:12:478:6:239:-16.4647,0,-37.9499 dDocent_Contig_14324 10 . C A 1857.75 . AB=0.8;ABP=69.4574;AC=3;AF=0.5;AN=6;AO=68;CIGAR=1X;DP=85;DPB=85;DPRA=0;EPP=150.67;EPPR=37.7539;GTI=0;LEN=1;MEANALT=1.33333;MQM=38.8088;MQMR=59;NS=3;NUMALT=1;ODDS=0;PAIRED=0.102941;PAIREDR=0.875;PAO=0;PQA=0;PQR=0;PRO=0;QA=2734;QR=647;RO=16;RPL=0;RPP=150.67;RPPR=37.7539;RPR=68;RUN=1;SAF=68;SAP=150.67;SAR=0;SRF=16;SRP=37.7539;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:37:7,30:7:284:30:1206:-85.6942,0,-14.7959 0/1:6:1,4:1:41:4:156:-10.3578,0,-2.33471 0/1:42:8,34:8:322:34:1372:-95.1832,0,-16.6635 dDocent_Contig_14325 131 . T A 726.186 . AB=0.421053;ABP=7.12467;AC=3;AF=0.5;AN=6;AO=32;CIGAR=1X;DP=76;DPB=76;DPRA=0;EPP=72.4974;EPPR=98.5551;GTI=0;LEN=1;MEANALT=1;MQM=40;MQMR=40;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=1179;QR=1572;RO=44;RPL=0;RPP=72.4974;RPPR=98.5551;RPR=32;RUN=1;SAF=0;SAP=72.4974;SAR=32;SRF=0;SRP=98.5551;SRR=44;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:33:22,11:22:798:11:391:-23.6985,0,-59.106 0/1:5:2,3:2:65:3:117:-8.70399,0,-4.47706 0/1:38:20,18:20:709:18:671:-45.7386,0,-50.1617 dDocent_Contig_14326 46 . A T 96.7455 . AB=0.166667;ABP=14.5915;AC=1;AF=0.166667;AN=6;AO=2;CIGAR=1X3M1X;DP=19;DPB=19;DPRA=3.42857;EPP=7.35324;EPPR=35.5824;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=2;ODDS=0;PAIRED=0;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=77;QR=605;RO=15;RPL=0;RPP=7.35324;RPPR=35.5824;RPR=2;RUN=1;SAF=0;SAP=7.35324;SAR=2;SRF=15;SRP=35.5824;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|0:5:5,0,0:5:203:0,0:0,0:0,-1.50515,-18.6531,-1.50515,-18.6531,-18.6531 0|0:2:0,0,2:0:0:0,2:0,79:-7.49724,-7.49724,-7.49724,-0.60206,-0.60206,0 0|1:12:10,2,0:10:402:2,0:77,0:-3.69647,0,-32.9283,-6.70677,-33.5304,-39.8496 dDocent_Contig_14327 61 . T G 697.662 . AB=0.52;ABP=3.18402;AC=3;AF=0.5;AN=6;AO=26;CIGAR=2X;DP=50;DPB=50;DPRA=0;EPP=59.4686;EPPR=55.1256;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=992;QR=934;RO=24;RPL=26;RPP=59.4686;RPPR=55.1256;RPR=0;RUN=1;SAF=26;SAP=59.4686;SAR=0;SRF=24;SRP=55.1256;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|1:25:13,12:13:510:12:469:-35.0358,0,-38.723 0|1:10:2,8:2:78:8:302:-24.522,0,-4.393 0|1:15:9,6:9:346:6:221:-15.7307,0,-26.9833 dDocent_Contig_14328 10 . C A 219.769 . AB=0.16;ABP=28.1125;AC=2;AF=0.333334;AN=6;AO=4;CIGAR=1X1M1X3M1X;DP=31;DPB=31;DPRA=0;EPP=11.6962;EPPR=37.7539;GTI=0;LEN=1;MEANALT=2;MQM=44;MQMR=60;NS=3;NUMALT=3;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=160;QR=620;RO=16;RPL=0;RPP=11.6962;RPPR=37.7539;RPR=4;RUN=1;SAF=4;SAP=11.6962;SAR=0;SRF=16;SRP=37.7539;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|0:18:10,0,2,5:10:380:0,2,5:0,79,199:-13.3822,-16.3925,-47.5434,-10.1349,-41.2824,-40.6803,0,-31.1535,-24.8919,-29.6484 0|1:7:5,0,2,0:5:199:0,2,0:0,81,0:-5.28194,-6.78709,-23.1793,0,-16.7836,-16.1815,-6.78709,-23.1793,-16.7836,-23.1793 1|0:6:1,2,0,2:1:41:2,0,2:76,0,77:-8.8351,-2.93808,-5.73252,-9.13613,-6.33458,-12.5273,-2.80212,0,-6.19984,-5.59778 dDocent_Contig_14329 26 . T A 4191.34 . AB=0.658537;ABP=47.7638;AC=3;AF=0.5;AN=6;AO=135;CIGAR=1X;DP=205;DPB=205;DPRA=0;EPP=296.159;EPPR=155.013;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=5397;QR=2717;RO=70;RPL=0;RPP=296.159;RPPR=155.013;RPR=135;RUN=1;SAF=135;SAP=296.159;SAR=0;SRF=70;SRP=155.013;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:120:40,80:40:1575:80:3194:-251.401,0,-105.876 0/1:41:24,17:24:913:17:686:-49.7276,0,-70.1383 0/1:44:6,38:6:229:38:1517:-123.529,0,-7.72876 dDocent_Contig_14330 8 . C G 133.904 . AB=0.212121;ABP=26.7649;AC=1;AF=0.166667;AN=6;AO=7;CIGAR=1X;DP=45;DPB=45;DPRA=5.5;EPP=18.2106;EPPR=85.5263;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=1.73472e-18;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=272;QR=1477;RO=38;RPL=0;RPP=18.2106;RPPR=85.5263;RPR=7;RUN=1;SAF=7;SAP=18.2106;SAR=0;SRF=38;SRP=85.5263;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:33:26,7:26:1012:7:272:-14.9132,0,-81.4556 0/0:5:5,0:5:193:0:0:0,-1.50515,-17.7414 0/0:7:7,0:7:272:0:0:0,-2.10721,-24.8472 dDocent_Contig_14331 48 . C A 221.099 . AB=0.277778;ABP=18.4519;AC=2;AF=0.333333;AN=6;AO=10;CIGAR=1X;DP=47;DPB=47;DPRA=1.63636;EPP=24.725;EPPR=83.3548;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=0.891892;PAO=0;PQA=0;PQR=0;PRO=0;QA=394;QR=1473;RO=37;RPL=0;RPP=24.725;RPPR=83.3548;RPR=10;RUN=1;SAF=10;SAP=24.725;SAR=0;SRF=37;SRP=83.3548;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:30:21,9:21:833:9:358:-23.5512,0,-66.2544 0/0:11:11,0:11:439:0:0:0,-3.31133,-39.865 0/1:6:5,1:5:201:1:36:-1.79209,0,-16.6643 dDocent_Contig_14332 123 . A G 69.3534 . AB=0.0769231;ABP=43.4331;AC=1;AF=0.166667;AN=6;AO=3;CIGAR=2X2M;DP=48;DPB=48;DPRA=3.5;EPP=9.52472;EPPR=81.1833;GTI=0;LEN=1;MEANALT=2;MQM=60;MQMR=60;NS=3;NUMALT=3;ODDS=0;PAIRED=0;PAIREDR=0.638889;PAO=0;PQA=0;PQR=0;PRO=0;QA=104;QR=1249;RO=36;RPL=0;RPP=9.52472;RPPR=81.1833;RPR=3;RUN=1;SAF=0;SAP=9.52472;SAR=3;SRF=0;SRP=81.1833;SRR=36;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|1:26:15,4,5,2:15:519:4,5,2:133,161,70:-8.4572,-2.20962,-43.1935,0,-31.4232,-40.6775,-7.27294,-38.7013,-36.4865,-48.8601 0|0:6:6,0,0,0:6:208:0,0,0:0,0,0:0,-1.80618,-19.0596,-1.80618,-19.0596,-19.0596,-1.80618,-19.0596,-19.0596,-19.0596 0|0:16:15,0,0,1:15:522:0,0,1:0,0,34:0,-4.51545,-46.9695,-4.51545,-46.9695,-46.9695,-1.41757,-44.212,-44.212,-43.911 dDocent_Contig_14333 165 . G A 45.6395 . AB=0.142857;ABP=34.0313;AC=1;AF=0.25;AN=4;AO=4;CIGAR=1X;DP=39;DPB=39;DPRA=2.54545;EPP=11.6962;EPPR=76.8404;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=2;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=159;QR=1345;RO=34;RPL=4;RPP=11.6962;RPPR=76.8404;RPR=0;RUN=1;SAF=0;SAP=11.6962;SAR=4;SRF=0;SRP=76.8404;SRR=34;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:28:24,4:24:940:4:159:-6.26291,0,-76.4742 ./.:.:.:.:.:.:.:. 0/0:11:10,0:10:405:0:0:0,-3.0103,-36.6915 dDocent_Contig_14335 14 . G A 138.943 . AB=0.545455;ABP=3.20771;AC=1;AF=0.166667;AN=6;AO=7;CIGAR=1X;DP=40;DPB=40;DPRA=1.16667;EPP=18.2106;EPPR=74.6689;GTI=0;LEN=1;MEANALT=1;MQM=39.4286;MQMR=56.9091;NS=3;NUMALT=1;ODDS=0;PAIRED=0;PAIREDR=0.454545;PAO=0;PQA=0;PQR=0;PRO=0;QA=269;QR=1330;RO=33;RPL=0;RPP=18.2106;RPPR=74.6689;RPR=7;RUN=1;SAF=7;SAP=18.2106;SAR=0;SRF=33;SRP=74.6689;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:17:16,1:16:652:1:38:0,-1.72991,-55.6252 0/1:11:5,6:5:202:6:231:-15.7182,0,-11.0879 0/0:12:12,0:12:476:0:0:0,-3.61236,-43.19 dDocent_Contig_14336 13 . C G 51.4622 . AB=0.112676;ABP=95.5273;AC=1;AF=0.166667;AN=6;AO=10;CIGAR=1X;DP=358;DPB=358;DPRA=1.44565;EPP=24.725;EPPR=754.34;GTI=0;LEN=1;MEANALT=1.5;MQM=58;MQMR=49.1387;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=0.945087;PAO=0;PQA=0;PQR=0;PRO=0;QA=379;QR=13825;RO=346;RPL=0;RPP=24.725;RPPR=754.34;RPR=10;RUN=1;SAF=10;SAP=24.725;SAR=0;SRF=346;SRP=754.34;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:195:193,2:193:7726:2:67:0,-52.622,-590.742 0/1:71:62,8:62:2480:8:312:-6.97012,0,-189.669 0/0:92:91,0:91:3619:0:0:0,-27.3937,-299.326 dDocent_Contig_14337 130 . A G 1097.68 . AB=0.432432;ABP=7.41193;AC=3;AF=0.5;AN=6;AO=48;CIGAR=3M1X8M;DP=111;DPB=110.333;DPRA=0;EPP=107.241;EPPR=72.4974;GTI=0;LEN=1;MEANALT=6.33333;MQM=53.9792;MQMR=60;NS=3;NUMALT=5;ODDS=0;PAIRED=0;PAIREDR=0.8125;PAO=0;PQA=0;PQR=0;PRO=0;QA=1565;QR=999;RO=32;RPL=0;RPP=107.241;RPPR=72.4974;RPR=48;RUN=1;SAF=0;SAP=107.241;SAR=48;SRF=0;SRP=72.4974;SRR=32;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|1:52:18,1,1,3,3,23:18:559:1,1,3,3,23:5,32,104,51,767:-56.708,-62.1897,-106.767,-59.5569,-104.498,-104.137,-53.8662,-98.8087,-96.1787,-97.8451,-59.2568,-104.193,-101.563,-95.8732,-103.229,0,-44.9788,-42.3444,-36.6517,-42.046,-37.9911 0|1:14:3,0,3,0,1,6:3:101:0,3,0,1,6:0,92,0,17,163:-11.1436,-12.0467,-20.2493,-4.67851,-12.8918,-11.9887,-12.0467,-20.2493,-12.8918,-20.2493,-11.0958,-19.2973,-11.9417,-19.2973,-18.9962,0,-8.21909,-0.855216,-8.21909,-7.27685,-6.41291 0|1:45:11,5,1,0,6,19:11:339:5,1,0,6,19:25,32,0,99,635:-47.4198,-51.0415,-76.736,-48.1595,-75.671,-75.0672,-50.7312,-78.2411,-75.3682,-77.9389,-45.2482,-72.7621,-69.8816,-72.452,-70.6458,0,-27.5826,-24.693,-27.2669,-21.7821,-21.5473 dDocent_Contig_14340 43 . A T 356.526 . AB=0.325581;ABP=14.3727;AC=1;AF=0.166667;AN=6;AO=14;CIGAR=1M1X;DP=50;DPB=56;DPRA=12.2857;EPP=33.4109;EPPR=72.4974;GTI=0;LEN=1;MEANALT=2;MQM=60;MQMR=60;NS=3;NUMALT=2;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=544;QR=1180;RO=32;RPL=0;RPP=33.4109;RPPR=72.4974;RPR=14;RUN=1;SAF=14;SAP=33.4109;SAR=0;SRF=32;SRP=72.4974;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|1:43:25,4,14:25:921:4,14:155,544:-37.1739,-31.966,-106.057,0,-62.5549,-71.077 0|0:1:1,0,0:1:36:0,0:0,0:0,-0.30103,-3.59827,-0.30103,-3.59827,-3.59827 0|0:6:6,0,0:6:223:0,0:0,0:0,-1.80618,-20.4285,-1.80618,-20.4285,-20.4285 dDocent_Contig_14341 107 . N G 120.743 . AB=0;ABP=0;AC=6;AF=1;AN=6;AO=8;CIGAR=1X;DP=8;DPB=8;DPRA=0;EPP=20.3821;EPPR=0;GTI=0;LEN=1;MEANALT=1;MQM=17.375;MQMR=0;NS=3;NUMALT=1;ODDS=0;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=223;QR=0;RO=0;RPL=0;RPP=20.3821;RPPR=0;RPR=8;RUN=1;SAF=0;SAP=20.3821;SAR=8;SRF=0;SRP=0;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 1/1:2:0,2:0:0:2:41:-2.8896,-0.60206,0 1/1:4:0,4:0:0:4:118:-5.11853,-1.20412,0 1/1:2:0,2:0:0:2:64:-3.58801,-0.60206,0 dDocent_Contig_14342 110 . G T 68.2385 . AB=0;ABP=0;AC=2;AF=0.333333;AN=6;AO=2;CIGAR=1X;DP=25;DPB=25;DPRA=0.173913;EPP=7.35324;EPPR=52.9542;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=0;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=70;QR=788;RO=23;RPL=0;RPP=7.35324;RPPR=52.9542;RPR=2;RUN=1;SAF=0;SAP=7.35324;SAR=2;SRF=0;SRP=52.9542;SRR=23;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:14:14,0:14:475:0:0:0,-4.21442,-43.0747 1/1:2:0,2:0:0:2:70:-6.6474,-0.60206,0 0/0:9:9,0:9:313:0:0:0,-2.70927,-28.507 dDocent_Contig_14344 125 . C T 157.083 . AB=0.277778;ABP=10.7311;AC=3;AF=0.5;AN=6;AO=7;CIGAR=1X;DP=27;DPB=27;DPRA=1.42857;EPP=18.2106;EPPR=46.4397;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=0;PAIREDR=0.9;PAO=0;PQA=0;PQR=0;PRO=0;QA=244;QR=674;RO=20;RPL=0;RPP=18.2106;RPPR=46.4397;RPR=7;RUN=1;SAF=0;SAP=18.2106;SAR=7;SRF=0;SRP=46.4397;SRR=20;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:18:13,5:13:435:5:174:-10.5834,0,-34.0537 1/1:2:0,2:0:0:2:70:-6.6474,-0.60206,0 0/0:7:7,0:7:239:0:0:0,-2.10721,-21.8439 dDocent_Contig_14346 18 . C A 501.665 . AB=0.382979;ABP=8.60069;AC=2;AF=0.333333;AN=6;AO=18;CIGAR=1X;DP=57;DPB=57;DPRA=2.35;EPP=42.0968;EPPR=87.6977;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=3.46945e-18;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=732;QR=1584;RO=39;RPL=0;RPP=42.0968;RPPR=87.6977;RPR=18;RUN=1;SAF=18;SAP=42.0968;SAR=0;SRF=39;SRP=87.6977;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:36:19,17:19:774:17:691:-51.6807,0,-59.1419 0/0:10:10,0:10:403:0:0:0,-3.0103,-36.6304 0/1:11:10,1:10:407:1:41:-0.783237,0,-33.6791 dDocent_Contig_14347 14 . G T 71.098 . AB=0.307692;ABP=7.18621;AC=2;AF=0.333333;AN=6;AO=4;CIGAR=1X;DP=18;DPB=18;DPRA=1.3;EPP=11.6962;EPPR=33.4109;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=1.73472e-18;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=153;QR=554;RO=14;RPL=0;RPP=11.6962;RPPR=33.4109;RPR=4;RUN=1;SAF=4;SAP=11.6962;SAR=0;SRF=14;SRP=33.4109;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:11:8,3:8:325:3:113:-7.22748,0,-26.3083 0/1:2:1,1:1:40:1:40:-3.39362,0,-3.39362 0/0:5:5,0:5:189:0:0:0,-1.50515,-17.3714 dDocent_Contig_14349 26 . C T 177.931 . AB=0.285714;ABP=14.1779;AC=2;AF=0.333333;AN=6;AO=8;CIGAR=1X;DP=85;DPB=85;DPRA=0.245614;EPP=20.3821;EPPR=170.214;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=0.987013;PAO=0;PQA=0;PQR=0;PRO=0;QA=322;QR=3056;RO=77;RPL=0;RPP=20.3821;RPPR=170.214;RPR=8;RUN=1;SAF=8;SAP=20.3821;SAR=0;SRF=77;SRP=170.214;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:57:57,0:57:2250:0:0:0,-17.1587,-202.675 0/1:4:2,2:2:82:2:79:-6.29312,0,-6.57556 0/1:24:18,6:18:724:6:243:-15.0229,0,-58.2619 dDocent_Contig_14350 59 . G A 227.284 . AB=0.3125;ABP=12.7819;AC=3;AF=0.5;AN=6;AO=10;CIGAR=1X;DP=32;DPB=32;DPRA=0;EPP=24.725;EPPR=50.7827;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=404;QR=878;RO=22;RPL=10;RPP=24.725;RPPR=50.7827;RPR=0;RUN=1;SAF=10;SAP=24.725;SAR=0;SRF=22;SRP=50.7827;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:16:10,6:10:405:6:244:-17.5223,0,-31.9939 0/1:9:6,3:6:239:3:122:-8.66322,0,-19.1746 0/1:7:6,1:6:234:1:38:-1.69006,0,-19.3218 dDocent_Contig_14353 106 . N G 65.5375 . AB=0;ABP=0;AC=2;AF=1;AN=2;AO=2;CIGAR=2X;DP=2;DPB=2;DPRA=0;EPP=7.35324;EPPR=0;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=0;NS=1;NUMALT=1;ODDS=5.99146;PAIRED=1;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=69;QR=0;RO=0;RPL=0;RPP=7.35324;RPPR=0;RPR=2;RUN=1;SAF=0;SAP=7.35324;SAR=2;SRF=0;SRP=0;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL .:.:.:.:.:.:.:. .:.:.:.:.:.:.:. 1|1:2:0,2:0:0:2:69:-6.55266,-0.60206,0 dDocent_Contig_14354 15 . C T 1188.94 . AB=0.627119;ABP=11.2913;AC=4;AF=0.666667;AN=6;AO=39;CIGAR=1X;DP=61;DPB=61;DPRA=0;EPP=87.6977;EPPR=50.7827;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=1546;QR=889;RO=22;RPL=0;RPP=87.6977;RPPR=50.7827;RPR=39;RUN=1;SAF=39;SAP=87.6977;SAR=0;SRF=22;SRP=50.7827;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:36:14,22:14:565:22:873:-68.0367,0,-40.3549 1/1:2:0,2:0:0:2:82:-7.77968,-0.60206,0 0/1:23:8,15:8:324:15:591:-46.6005,0,-22.6055 dDocent_Contig_14355 14 . C A 2249.33 . AB=0.741573;ABP=48.1232;AC=4;AF=0.666667;AN=6;AO=70;CIGAR=1X;DP=93;DPB=93;DPRA=0;EPP=155.013;EPPR=52.9542;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=0.971429;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=2826;QR=906;RO=23;RPL=0;RPP=155.013;RPPR=52.9542;RPR=70;RUN=1;SAF=70;SAP=155.013;SAR=0;SRF=23;SRP=52.9542;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:56:17,39:17:672:39:1575:-125.124,0,-43.9499 1/1:4:0,4:0:0:4:164:-15.1499,-1.20412,0 0/1:33:6,27:6:234:27:1087:-88.1813,0,-11.493 dDocent_Contig_14359 53 . G A 69.8214 . AB=0.263158;ABP=12.2676;AC=1;AF=0.166667;AN=6;AO=5;CIGAR=1X;DP=57;DPB=57;DPRA=1;EPP=13.8677;EPPR=115.927;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=158;QR=1998;RO=52;RPL=5;RPP=13.8677;RPPR=115.927;RPR=0;RUN=1;SAF=5;SAP=13.8677;SAR=0;SRF=52;SRP=115.927;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:36:36,0:36:1359:0:0:0,-10.8371,-122.566 0/0:2:2,0:2:81:0:0:0,-0.60206,-7.68573 0/1:19:14,5:14:558:5:158:-8.80568,0,-44.8411 dDocent_Contig_14360 37 . A T 109.444 . AB=0.571429;ABP=3.32051;AC=1;AF=0.166667;AN=6;AO=5;CIGAR=1M1D1X;DP=48;DPB=46.3333;DPRA=1.21429;EPP=13.8677;EPPR=96.3836;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=1.73472e-18;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=202;QR=1663;RO=43;RPL=0;RPP=13.8677;RPPR=96.3836;RPR=5;RUN=1;SAF=5;SAP=13.8677;SAR=0;SRF=43;SRP=96.3836;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|0:27:26,1:26:1011:1:41:0,-4.03324,-87.1956 0|1:7:3,4:3:122:4:161:-12.7683,0,-9.26528 0|0:14:14,0:14:530:0:0:0,-4.21442,-48.0314 dDocent_Contig_14361 19 . G A 565.537 . AB=0.0894309;ABP=183.101;AC=1;AF=0.166667;AN=6;AO=11;CIGAR=1X2M1X3M;DP=123;DPB=123;DPRA=0;EPP=26.8965;EPPR=168.042;GTI=0;LEN=1;MEANALT=3.66667;MQM=60;MQMR=60;NS=3;NUMALT=4;ODDS=0;PAIRED=1;PAIREDR=0.947368;PAO=0;PQA=0;PQR=0;PRO=0;QA=426;QR=2954;RO=76;RPL=0;RPP=26.8965;RPPR=168.042;RPR=11;RUN=1;SAF=11;SAP=26.8965;SAR=0;SRF=76;SRP=168.042;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|0:47:34,2,1,2,8:34:1300:2,1,2,8:81,39,79,320:-16.1257,-19.6805,-125.723,-23.1556,-123.119,-129.498,-19.8605,-119.824,-123.298,-125.902,0,-99.9629,-103.437,-100.142,-104.235 0|1:34:22,5,2,2,3:22:864:5,2,2,3:188,79,79,117:-8.77138,0,-69.5579,-8.89125,-64.562,-79.3584,-8.89125,-64.562,-73.4591,-79.3584,-5.77555,-61.4463,-70.3433,-70.3433,-75.9415 0|0:42:20,0,0,7,13:20:790:0,0,7,13:0,0,268,524:-37.1795,-43.2001,-108.207,-43.2001,-108.207,-108.207,-21.2152,-86.2183,-86.2183,-84.1111,0,-65.0128,-65.0128,-43.0246,-61.0994 dDocent_Contig_14362 86 . C T 342.844 . AB=0.240506;ABP=49.2159;AC=2;AF=0.333333;AN=6;AO=19;CIGAR=1X;DP=86;DPB=86;DPRA=5.64286;EPP=44.2683;EPPR=148.499;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=663;QR=2282;RO=67;RPL=19;RPP=44.2683;RPPR=148.499;RPR=0;RUN=1;SAF=19;SAP=44.2683;SAR=0;SRF=67;SRP=148.499;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:49:33,16:33:1117:16:558:-35.7989,0,-86.0838 0/0:7:7,0:7:243:0:0:0,-2.10721,-22.2088 0/1:30:27,3:27:922:3:105:-0.765262,0,-74.2609 dDocent_Contig_14363 12 . T C 177.445 . AB=0.2;ABP=42.0968;AC=2;AF=0.333333;AN=6;AO=10;CIGAR=1X;DP=161;DPB=161;DPRA=0.225225;EPP=24.725;EPPR=330.903;GTI=0;LEN=1;MEANALT=1;MQM=43;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=0.927152;PAO=0;PQA=0;PQR=0;PRO=0;QA=396;QR=5488;RO=151;RPL=0;RPP=24.725;RPPR=330.903;RPR=10;RUN=1;SAF=10;SAP=24.725;SAR=0;SRF=151;SRP=330.903;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:111:111,0:111:4025:0:0:0,-33.4143,-362.369 0/1:15:8,7:8:278:7:275:-19.566,0,-20.841 0/1:35:32,3:32:1185:3:121:-0.229699,0,-96.4117 dDocent_Contig_14364 107 . N G 1274.14 . AB=0;ABP=0;AC=6;AF=1;AN=6;AO=43;CIGAR=1X;DP=43;DPB=43;DPRA=0;EPP=96.3836;EPPR=0;GTI=0;LEN=1;MEANALT=1;MQM=54.9535;MQMR=0;NS=3;NUMALT=1;ODDS=0;PAIRED=0.837209;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=1429;QR=0;RO=0;RPL=0;RPP=96.3836;RPPR=0;RPR=43;RUN=1;SAF=0;SAP=96.3836;SAR=43;SRF=0;SRP=0;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 1/1:16:0,16:0:0:16:542:-46.8119,-4.81648,0 1/1:5:0,5:0:0:5:164:-14.7583,-1.50515,0 1/1:22:0,22:0:0:22:723:-65.3662,-6.62266,0 dDocent_Contig_14365 9 . A T 203.964 . AB=0.134752;ABP=166.394;AC=2;AF=0.333333;AN=6;AO=20;CIGAR=1X;DP=158;DPB=158;DPRA=0;EPP=46.4397;EPPR=302.673;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=754;QR=5231;RO=138;RPL=0;RPP=46.4397;RPPR=302.673;RPR=20;RUN=1;SAF=20;SAP=46.4397;SAR=0;SRF=138;SRP=302.673;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:91:77,14:77:2943:14:544:-21.9125,0,-237.649 0/0:17:16,1:16:599:1:39:0,-1.22095,-50.3501 0/1:50:45,5:45:1689:5:171:-0.669726,0,-137.213 dDocent_Contig_14367 56 . T G 1317.38 . AB=0.47;ABP=3.79203;AC=4;AF=0.666667;AN=6;AO=47;CIGAR=1X1M;DP=100;DPB=100;DPRA=0;EPP=105.07;EPPR=98.5551;GTI=0;LEN=1;MEANALT=2;MQM=60;MQMR=60;NS=3;NUMALT=2;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=1757;QR=1702;RO=44;RPL=47;RPP=105.07;RPPR=98.5551;RPR=0;RUN=1;SAF=47;SAP=105.07;SAR=0;SRF=44;SRP=98.5551;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|1:62:36,4,22:36:1392:4,22:157,868:-60.5801,-58.5049,-171.628,0,-101.414,-107.704 1|1:6:0,2,4:0:0:2,4:77,117:-15.9673,-9.61414,-9.01208,-6.70708,0,-5.50296 0|1:32:8,3,21:8:310:3,21:103,772:-60.7135,-54.7627,-79.3334,0,-17.1503,-19.1787 dDocent_Contig_14368 113 . T C 311.059 . AB=0.310345;ABP=21.1309;AC=3;AF=0.5;AN=6;AO=18;CIGAR=1X;DP=58;DPB=58;DPRA=0;EPP=42.0968;EPPR=89.8692;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=590;QR=1379;RO=40;RPL=0;RPP=42.0968;RPPR=89.8692;RPR=18;RUN=1;SAF=0;SAP=42.0968;SAR=18;SRF=0;SRP=89.8692;SRR=40;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:33:23,10:23:796:10:315:-18.7216,0,-62.0255 0/1:4:2,2:2:64:2:70:-5.44328,0,-4.87425 0/1:21:15,6:15:519:6:205:-12.4636,0,-40.7171 dDocent_Contig_14371 81 . C T 240.25 . AB=0.392857;ABP=5.80219;AC=2;AF=0.333333;AN=6;AO=11;CIGAR=1X;DP=29;DPB=29;DPRA=14;EPP=26.8965;EPPR=42.0968;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=392;QR=626;RO=18;RPL=11;RPP=26.8965;RPPR=42.0968;RPR=0;RUN=1;SAF=11;SAP=26.8965;SAR=0;SRF=18;SRP=42.0968;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:17:10,7:10:349:7:250:-17.7292,0,-26.6284 0/0:1:1,0:1:36:0:0:0,-0.30103,-3.59827 0/1:11:7,4:7:241:4:142:-9.81788,0,-18.715 dDocent_Contig_14372 133 . C T 80.9468 . AB=0.8;ABP=6.91895;AC=1;AF=0.166667;AN=6;AO=4;CIGAR=1X3M6I1M1X;DP=26;DPB=30;DPRA=0.47619;EPP=11.6962;EPPR=50.7827;GTI=0;LEN=1;MEANALT=1;MQM=33;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=0;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=135;QR=740;RO=22;RPL=0;RPP=11.6962;RPPR=50.7827;RPR=4;RUN=1;SAF=0;SAP=11.6962;SAR=4;SRF=0;SRP=50.7827;SRR=22;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|0:11:11,0:11:373:0:0:0,-3.31133,-33.8981 0|1:5:1,4:1:34:4:135:-9.71163,0,-1.89376 0|0:10:10,0:10:333:0:0:0,-3.0103,-30.2941 dDocent_Contig_14373 16 . T C 326.26 . AB=0.0666667;ABP=51.9408;AC=0;AF=0;AN=6;AO=2;CIGAR=2X;DP=51;DPB=51;DPRA=3;EPP=7.35324;EPPR=81.1833;GTI=0;LEN=1;MEANALT=2;MQM=60;MQMR=60;NS=3;NUMALT=2;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=76;QR=1431;RO=36;RPL=0;RPP=7.35324;RPPR=81.1833;RPR=2;RUN=1;SAF=2;SAP=7.35324;SAR=0;SRF=36;SRP=81.1833;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|0:30:19,2,9:19:757:2,9:76,365:-24.4017,-23.8941,-85.6237,0,-56.1229,-59.6437 0|0:10:10,0,0:10:391:0,0:0,0:0,-3.0103,-35.5441,-3.0103,-35.5441,-35.5441 0|0:11:7,0,4:7:283:0,4:0,163:-11.7471,-13.8543,-37.1846,0,-23.7362,-22.532 dDocent_Contig_14374 176 . A T 171.257 . AB=0.32;ABP=10.0459;AC=2;AF=0.333333;AN=6;AO=8;CIGAR=1X;DP=29;DPB=29;DPRA=3.125;EPP=20.3821;EPPR=48.6112;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=305;QR=844;RO=21;RPL=8;RPP=20.3821;RPPR=48.6112;RPR=0;RUN=1;SAF=0;SAP=20.3821;SAR=8;SRF=0;SRP=48.6112;SRR=21;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:15:9,6:9:366:6:233:-16.8223,0,-28.7895 0/0:4:4,0:4:159:0:0:0,-1.20412,-14.6914 0/1:10:8,2:8:319:2:72:-3.82402,0,-26.0671 dDocent_Contig_14375 15 . T C 909.614 . AB=0.393258;ABP=11.8182;AC=3;AF=0.5;AN=6;AO=35;CIGAR=1X1M1X1M1X;DP=89;DPB=89;DPRA=0;EPP=79.0118;EPPR=120.27;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=1358;QR=2089;RO=54;RPL=0;RPP=79.0118;RPPR=120.27;RPR=35;RUN=1;SAF=35;SAP=79.0118;SAR=0;SRF=54;SRP=120.27;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|1:60:36,24:36:1382:24:923:-65.3145,0,-106.585 0|1:8:4,4:4:155:4:157:-12.1007,0,-11.917 0|1:21:14,7:14:552:7:278:-19.0691,0,-43.7033 dDocent_Contig_14376 16 . T C 162.498 . AB=0.195652;ABP=40.0197;AC=2;AF=0.333333;AN=6;AO=9;CIGAR=1X;DP=52;DPB=52;DPRA=3.83333;EPP=22.5536;EPPR=96.3836;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=3.46945e-18;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=365;QR=1735;RO=43;RPL=0;RPP=22.5536;RPPR=96.3836;RPR=9;RUN=1;SAF=9;SAP=22.5536;SAR=0;SRF=43;SRP=96.3836;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:34:29,5:29:1176:5:203:-8.41804,0,-95.8804 0/0:6:6,0:6:241:0:0:0,-1.80618,-22.0661 0/1:12:8,4:8:318:4:162:-11.3546,0,-25.3725 dDocent_Contig_14378 92 . G A 207.205 . AB=0.37037;ABP=6.95112;AC=2;AF=0.333333;AN=6;AO=11;CIGAR=1X;DP=40;DPB=40;DPRA=0;EPP=26.8965;EPPR=65.983;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=387;QR=994;RO=29;RPL=11;RPP=26.8965;RPPR=65.983;RPR=0;RUN=1;SAF=11;SAP=26.8965;SAR=0;SRF=29;SRP=65.983;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:9:4,5:4:125:5:175:-13.3844,0,-8.84875 0/1:18:13,5:13:437:5:177:-10.8584,0,-34.2325 0/0:13:12,1:12:432:1:35:0,-0.414761,-35.7226 dDocent_Contig_14379 79 . G T 82.8447 . AB=0.142857;ABP=88.3181;AC=2;AF=0.333333;AN=6;AO=11;CIGAR=1X2M2I5M;DP=94;DPB=96.75;DPRA=2.26471;EPP=26.8965;EPPR=181.071;GTI=0;LEN=1;MEANALT=1.5;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=381;QR=2790;RO=82;RPL=11;RPP=26.8965;RPPR=181.071;RPR=0;RUN=1;SAF=11;SAP=26.8965;SAR=0;SRF=82;SRP=181.071;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|1:47:40,6:40:1371:6:213:-5.387,0,-109.571 0|0:17:17,0:17:572:0:0:0,-5.11751,-51.8002 0|1:30:25,5:25:847:5:168:-6.42028,0,-67.5135 dDocent_Contig_14380 20 . C T 2098.75 . AB=0.546154;ABP=5.41562;AC=1;AF=0.166667;AN=6;AO=71;CIGAR=1X;DP=167;DPB=167;DPRA=7.02703;EPP=157.185;EPPR=211.472;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=2782;QR=3755;RO=96;RPL=0;RPP=157.185;RPPR=211.472;RPR=71;RUN=1;SAF=71;SAP=157.185;SAR=0;SRF=96;SRP=211.472;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:130:59,71:59:2325:71:2782:-211.398,0,-170.297 0/0:3:3,0:3:117:0:0:0,-0.90309,-10.9102 0/0:34:34,0:34:1313:0:0:0,-10.235,-118.453 dDocent_Contig_14382 21 . C A 94.2281 . AB=0.230769;ABP=19.3799;AC=2;AF=0.333333;AN=6;AO=6;CIGAR=1X3M1X2M1X;DP=38;DPB=38;DPRA=1.08333;EPP=16.0391;EPPR=72.4974;GTI=0;LEN=1;MEANALT=1;MQM=53;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=0;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=223;QR=1258;RO=32;RPL=0;RPP=16.0391;RPPR=72.4974;RPR=6;RUN=1;SAF=6;SAP=16.0391;SAR=0;SRF=32;SRP=72.4974;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|1:22:19,3:19:749:3:106:-3.24193,0,-61.1093 0|0:12:12,0:12:470:0:0:0,-3.61236,-42.6513 0|1:4:1,3:1:39:3:117:-9.66762,0,-2.69244 dDocent_Contig_14383 11 . C A 336.984 . AB=0.318182;ABP=15.6443;AC=3;AF=0.5;AN=6;AO=14;CIGAR=1X;DP=44;DPB=44;DPRA=0;EPP=33.4109;EPPR=68.1545;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=570;QR=1206;RO=30;RPL=0;RPP=33.4109;RPPR=68.1545;RPR=14;RUN=1;SAF=14;SAP=33.4109;SAR=0;SRF=30;SRP=68.1545;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:27:21,6:21:847:6:243:-14.1202,0,-68.4127 0/1:3:2,1:2:81:1:41:-3.19148,0,-6.78264 0/1:14:7,7:7:278:7:286:-21.9004,0,-21.1731 dDocent_Contig_14384 118 . C G 44.6683 . AB=0.666667;ABP=3.73412;AC=1;AF=0.166667;AN=6;AO=3;CIGAR=1X;DP=38;DPB=38;DPRA=0.857143;EPP=9.52472;EPPR=79.0118;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=105;QR=1136;RO=35;RPL=0;RPP=9.52472;RPPR=79.0118;RPR=3;RUN=1;SAF=0;SAP=9.52472;SAR=3;SRF=0;SRP=79.0118;SRR=35;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:21:20,1:20:638:1:35:0,-2.823,-54.2222 0/1:3:1,2:1:24:2:70:-5.74431,0,-1.4968 0/0:14:14,0:14:474:0:0:0,-4.21442,-42.984 dDocent_Contig_14385 143 . C A 2072.37 . AB=0.496552;ABP=3.02528;AC=3;AF=0.5;AN=6;AO=72;CIGAR=1X;DP=145;DPB=145;DPRA=0;EPP=159.356;EPPR=161.528;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=6.93889e-18;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=2839;QR=2895;RO=73;RPL=0;RPP=159.356;RPPR=161.528;RPR=72;RUN=1;SAF=0;SAP=159.356;SAR=72;SRF=0;SRP=161.528;SRR=73;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:85:46,39:46:1815:39:1510:-110.543,0,-137.981 0/1:13:11,2:11:432:2:81:-3.77234,0,-35.3183 0/1:47:16,31:16:648:31:1248:-98.4425,0,-44.5053 dDocent_Contig_14386 18 . C A 127.238 . AB=0.214286;ABP=22.8638;AC=1;AF=0.166667;AN=6;AO=7;CIGAR=2M1X5M2I1X3M;DP=74;DPB=71.4167;DPRA=6.9;EPP=18.2106;EPPR=126.784;GTI=0;LEN=1;MEANALT=4;MQM=60;MQMR=60;NS=3;NUMALT=3;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=260;QR=2237;RO=57;RPL=0;RPP=18.2106;RPPR=126.784;RPR=7;RUN=1;SAF=7;SAP=18.2106;SAR=0;SRF=57;SRP=126.784;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|0:41:37,0,1,1:37:1455:0,1,1:0,28,41:0,-11.1381,-130.884,-8.93432,-128.668,-128.367,-7.7258,-127.499,-125.283,-127.198 0|0:5:5,0,0,0:5:198:0,0,0:0,0,0:0,-1.50515,-18.1978,-1.50515,-18.1978,-18.1978,-1.50515,-18.1978,-18.1978,-18.1978 0|1:28:15,4,6,2:15:584:4,6,2:158,232,80:-14.5476,-6.06224,-52.8662,0,-35.013,-46.2028,-12.4692,-47.4788,-41.4174,-59.8724 dDocent_Contig_14388 7 . A G 653.744 . AB=0.233129;ABP=103.844;AC=3;AF=0.5;AN=6;AO=38;CIGAR=1X4M;DP=163;DPB=163;DPRA=0;EPP=85.5263;EPPR=250.558;GTI=0;LEN=1;MEANALT=3.33333;MQM=58.8421;MQMR=57.5175;NS=3;NUMALT=2;ODDS=0;PAIRED=0.973684;PAIREDR=0.982456;PAO=0;PQA=0;PQR=0;PRO=0;QA=1298;QR=4362;RO=114;RPL=0;RPP=85.5263;RPPR=250.558;RPR=38;RUN=1;SAF=38;SAP=85.5263;SAR=0;SRF=114;SRP=250.558;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|1:87:69,0,14:69:2630:0,14:0,472:-17.3771,-38.1482,-247.896,0,-209.732,-205.517 0|1:27:14,3,9:14:541:3,9:113,309:-20.9151,-17.1149,-57.7002,0,-33.5218,-38.8222 0|1:49:31,0,15:31:1191:0,15:0,517:-32.6051,-41.937,-136.727,0,-94.7534,-90.238 dDocent_Contig_14389 50 . T A 449.179 . AB=0.189394;ABP=113.624;AC=3;AF=0.5;AN=6;AO=25;CIGAR=1X;DP=132;DPB=132;DPRA=0;EPP=57.2971;EPPR=235.358;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=59.3271;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=0.981308;PAO=0;PQA=0;PQR=0;PRO=0;QA=990;QR=4193;RO=107;RPL=25;RPP=57.2971;RPPR=235.358;RPR=0;RUN=1;SAF=25;SAP=57.2971;SAR=0;SRF=107;SRP=235.358;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:77:62,15:62:2406:15:599:-31.0702,0,-193.525 0/1:19:16,3:16:625:3:113:-4.81822,0,-50.8597 0/1:36:29,7:29:1162:7:278:-14.5522,0,-90.9472 dDocent_Contig_14391 18 . C A 102.569 . AB=0.333333;ABP=3.73412;AC=5;AF=0.833333;AN=6;AO=4;CIGAR=1X;DP=6;DPB=6;DPRA=0;EPP=3.0103;EPPR=3.0103;GTI=0;LEN=1;MEANALT=1;MQM=35;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=143;QR=81;RO=2;RPL=0;RPP=11.6962;RPPR=7.35324;RPR=4;RUN=1;SAF=2;SAP=3.0103;SAR=2;SRF=1;SRP=3.0103;SRR=1;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:3:2,1:2:81:1:35:-1.55564,0,-6.78264 1/1:2:0,2:0:0:2:74:-6.68337,-0.60206,0 1/1:1:0,1:0:0:1:34:-3.04619,-0.30103,0 dDocent_Contig_14392 107 . N C 121.1 . AB=0;ABP=0;AC=4;AF=1;AN=4;AO=4;CIGAR=1X;DP=4;DPB=4;DPRA=0;EPP=11.6962;EPPR=0;GTI=0;LEN=1;MEANALT=1;MQM=40;MQMR=0;NS=2;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=128;QR=0;RO=0;RPL=0;RPP=11.6962;RPPR=0;RPR=4;RUN=1;SAF=0;SAP=11.6962;SAR=4;SRF=0;SRP=0;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 1/1:1:0,1:0:0:1:25:-2.48652,-0.30103,0 ./.:.:.:.:.:.:.:. 1/1:3:0,3:0:0:3:103:-9.32038,-0.90309,0 dDocent_Contig_14393 18 . G A 1064.97 . AB=0.331683;ABP=52.7177;AC=3;AF=0.5;AN=6;AO=67;CIGAR=1X;DP=202;DPB=202;DPRA=0;EPP=148.499;EPPR=296.159;GTI=0;LEN=1;MEANALT=1;MQM=30.7164;MQMR=59.8148;NS=3;NUMALT=1;ODDS=0;PAIRED=0.0597015;PAIREDR=0.918519;PAO=0;PQA=0;PQR=0;PRO=0;QA=2624;QR=5399;RO=135;RPL=0;RPP=148.499;RPPR=296.159;RPR=67;RUN=1;SAF=67;SAP=148.499;SAR=0;SRF=135;SRP=296.159;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:122:81,41:81:3256:41:1605:-72.7989,0,-256.175 0/1:23:10,13:10:396:13:513:-26.429,0,-29.0732 0/1:57:44,13:44:1747:13:506:-12.7916,0,-140.29 dDocent_Contig_14394 82 . A G 687.413 . AB=0.526316;ABP=3.35316;AC=3;AF=0.5;AN=6;AO=30;CIGAR=1X;DP=57;DPB=57;DPRA=0;EPP=68.1545;EPPR=61.6401;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=1005;QR=914;RO=27;RPL=30;RPP=68.1545;RPPR=61.6401;RPR=0;RUN=1;SAF=30;SAP=68.1545;SAR=0;SRF=27;SRP=61.6401;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:33:18,15:18:606:15:503:-35.6561,0,-44.9242 0/1:16:7,9:7:238:9:306:-23.0542,0,-16.9363 0/1:8:2,6:2:70:6:196:-15.5532,0,-4.23916 dDocent_Contig_14395 10 . A G 131.598 . AB=0.416667;ABP=3.73412;AC=1;AF=0.25;AN=4;AO=5;CIGAR=1X;DP=24;DPB=24;DPRA=1;EPP=13.8677;EPPR=44.2683;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=2;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=201;QR=767;RO=19;RPL=0;RPP=13.8677;RPPR=44.2683;RPR=5;RUN=1;SAF=5;SAP=13.8677;SAR=0;SRF=19;SRP=44.2683;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:12:7,5:7:284:5:201:-14.8587,0,-22.3211 ./.:.:.:.:.:.:.:. 0/0:12:12,0:12:483:0:0:0,-3.61236,-43.8207 dDocent_Contig_14397 8 . C T 1250.65 . AB=0.111111;ABP=38.4777;AC=3;AF=0.5;AN=6;AO=3;CIGAR=2X20M;DP=96;DPB=89.6818;DPRA=0;EPP=9.52472;EPPR=92.0407;GTI=0;LEN=1;MEANALT=4;MQM=60;MQMR=60;NS=3;NUMALT=3;ODDS=0;PAIRED=1;PAIREDR=1;PAO=3.5;PQA=138.25;PQR=138.25;PRO=3.5;QA=109;QR=1609;RO=41;RPL=0;RPP=9.52472;RPPR=92.0407;RPR=3;RUN=1;SAF=3;SAP=9.52472;SAR=0;SRF=41;SRP=92.0407;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|1:63:26,35,0,0:26:1026:35,0,0:1338,0,0:-101.728,0,-73.6663,-109.555,-84.2023,-193.976,-109.555,-84.2023,-193.976,-193.976 0|1:6:2,3,0,0:2:78:3,0,0:117,0,0:-9.03795,0,-5.52838,-9.64001,-6.43147,-16.0541,-9.64001,-6.43147,-16.0541,-16.0541 0|1:27:13,8,2,3:13:505:8,2,3:291,79,109:-19.8219,0,-39.0717,-17.2475,-34.9941,-58.1442,-14.8394,-32.5845,-49.8478,-55.4312 dDocent_Contig_14399 36 . T A 50.6727 . AB=0.16;ABP=28.1125;AC=2;AF=0.333333;AN=6;AO=4;CIGAR=1X;DP=27;DPB=27;DPRA=6.25;EPP=11.6962;EPPR=52.9542;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=0.869565;PAO=0;PQA=0;PQR=0;PRO=0;QA=163;QR=894;RO=23;RPL=0;RPP=11.6962;RPPR=52.9542;RPR=4;RUN=1;SAF=4;SAP=11.6962;SAR=0;SRF=23;SRP=52.9542;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:16:13,3:13:493:3:122:-6.55601,0,-39.88 0/0:2:2,0:2:81:0:0:0,-0.60206,-7.68573 0/1:9:8,1:8:320:1:41:-1.3853,0,-26.4568 dDocent_Contig_14400 14 . T A 48.7925 . AB=0.666667;ABP=3.73412;AC=1;AF=0.166667;AN=6;AO=2;CIGAR=1X3M2I2M;DP=116;DPB=116.667;DPRA=0.0530973;EPP=7.35324;EPPR=250.558;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=80;QR=4506;RO=114;RPL=0;RPP=7.35324;RPPR=250.558;RPR=2;RUN=1;SAF=2;SAP=7.35324;SAR=0;SRF=114;SRP=250.558;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|0:99:99,0:99:3910:0:0:0,-29.802,-351.921 0|0:14:14,0:14:557:0:0:0,-4.21442,-50.4738 0|1:3:1,2:1:39:2:80:-6.6887,0,-2.99347 dDocent_Contig_14401 90 . A G 426.75 . AB=0.842105;ABP=22.325;AC=1;AF=0.166667;AN=6;AO=16;CIGAR=1X;DP=30;DPB=30;DPRA=3.45455;EPP=37.7539;EPPR=33.4109;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=551;QR=486;RO=14;RPL=16;RPP=37.7539;RPPR=33.4109;RPR=0;RUN=1;SAF=16;SAP=37.7539;SAR=0;SRF=14;SRP=33.4109;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:19:3,16:3:105:16:551:-44.1966,0,-4.07659 0/0:5:5,0:5:172:0:0:0,-1.50515,-15.8185 0/0:6:6,0:6:209:0:0:0,-1.80618,-19.1511 dDocent_Contig_14403 35 . A G 556.181 . AB=0.310811;ABP=26.0162;AC=2;AF=0.333333;AN=6;AO=23;CIGAR=1X;DP=85;DPB=85;DPRA=3.36364;EPP=52.9542;EPPR=137.642;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=897;QR=2488;RO=62;RPL=0;RPP=52.9542;RPPR=137.642;RPR=23;RUN=1;SAF=23;SAP=52.9542;SAR=0;SRF=62;SRP=137.642;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:60:47,13:47:1896:13:490:-26.3648,0,-152.779 0/0:11:11,0:11:432:0:0:0,-3.31133,-39.2322 0/1:14:4,10:4:160:10:407:-32.7762,0,-10.5694 dDocent_Contig_14404 8 . C T 1285.42 . AB=0.476821;ABP=3.71495;AC=3;AF=0.5;AN=6;AO=72;CIGAR=1X;DP=151;DPB=151;DPRA=0;EPP=159.356;EPPR=174.557;GTI=0;LEN=1;MEANALT=1;MQM=33.2917;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=0.263889;PAIREDR=0.746835;PAO=0;PQA=0;PQR=0;PRO=0;QA=2740;QR=3050;RO=79;RPL=0;RPP=159.356;RPPR=174.557;RPR=72;RUN=1;SAF=72;SAP=159.356;SAR=0;SRF=79;SRP=174.557;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:91:52,39:52:2003:39:1481:-74.6236,0,-153.112 0/1:26:13,13:13:503:13:503:-25.299,0,-37.792 0/1:34:14,20:14:544:20:756:-34.1423,0,-39.0711 dDocent_Contig_14405 11 . A G 232.937 . AB=0.346154;ABP=8.35546;AC=1;AF=0.166667;AN=6;AO=9;CIGAR=1X;DP=65;DPB=65;DPRA=1.33333;EPP=22.5536;EPPR=124.613;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=362;QR=2221;RO=56;RPL=0;RPP=22.5536;RPPR=124.613;RPR=9;RUN=1;SAF=9;SAP=22.5536;SAR=0;SRF=56;SRP=124.613;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:28:28,0:28:1127:0:0:0,-8.42884,-101.713 0/0:11:11,0:11:431:0:0:0,-3.31133,-39.1427 0/1:26:17,9:17:663:9:362:-25.1176,0,-52.1702 dDocent_Contig_14406 123 . A G 92.2274 . AB=0.666667;ABP=4.45795;AC=1;AF=0.166667;AN=6;AO=4;CIGAR=1X;DP=48;DPB=48;DPRA=0.285714;EPP=11.6962;EPPR=98.5551;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=139;QR=1553;RO=44;RPL=0;RPP=11.6962;RPPR=98.5551;RPR=4;RUN=1;SAF=0;SAP=11.6962;SAR=4;SRF=0;SRP=98.5551;SRR=44;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:29:29,0:29:1021:0:0:0,-8.72987,-92.202 0/1:6:2,4:2:72:4:139:-11.0465,0,-5.03054 0/0:13:13,0:13:460:0:0:0,-3.91339,-41.7351 dDocent_Contig_14407 12 . G C 2365.85 . AB=0.66087;ABP=28.8603;AC=3;AF=0.5;AN=6;AO=76;CIGAR=1X;DP=115;DPB=115;DPRA=0;EPP=168.042;EPPR=87.6977;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=3065;QR=1527;RO=39;RPL=0;RPP=168.042;RPPR=87.6977;RPR=76;RUN=1;SAF=76;SAP=168.042;SAR=0;SRF=39;SRP=87.6977;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:69:23,46:23:901:46:1854:-146.291,0,-60.629 0/1:21:5,16:5:201:16:639:-51.5209,0,-12.1495 0/1:25:11,14:11:425:14:572:-44.2958,0,-31.0713 dDocent_Contig_14408 47 . G T 265.609 . AB=0.324324;ABP=12.9286;AC=3;AF=0.5;AN=6;AO=12;CIGAR=1X;DP=37;DPB=37;DPRA=0;EPP=29.068;EPPR=57.2971;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=468;QR=975;RO=25;RPL=0;RPP=29.068;RPPR=57.2971;RPR=12;RUN=1;SAF=12;SAP=29.068;SAR=0;SRF=25;SRP=57.2971;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:18:14,4:14:561:4:154:-8.81313,0,-45.4139 0/1:11:5,6:5:200:6:243:-18.9363,0,-15.0686 0/1:8:6,2:6:214:2:71:-4.33366,0,-17.1874 dDocent_Contig_14410 26 . C T 88.1928 . AB=0.145833;ABP=55.3066;AC=2;AF=0.333333;AN=6;AO=7;CIGAR=1X;DP=61;DPB=61;DPRA=1.84615;EPP=18.2106;EPPR=120.27;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=3.46945e-18;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=269;QR=2103;RO=54;RPL=0;RPP=18.2106;RPPR=120.27;RPR=7;RUN=1;SAF=7;SAP=18.2106;SAR=0;SRF=54;SRP=120.27;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:35:29,6:29:1137:6:228:-10.34,0,-92.081 0/1:13:12,1:12:453:1:41:-0.181177,0,-37.1927 0/0:13:13,0:13:513:0:0:0,-3.91339,-46.5132 dDocent_Contig_14411 51 . T C 1966.38 . AB=0.75;ABP=44.2683;AC=4;AF=0.666667;AN=6;AO=64;CIGAR=1X;DP=83;DPB=83;DPRA=0;EPP=141.985;EPPR=44.2683;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=2468;QR=753;RO=19;RPL=64;RPP=141.985;RPPR=44.2683;RPR=0;RUN=1;SAF=64;SAP=141.985;SAR=0;SRF=19;SRP=44.2683;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:58:14,44:14:563:44:1704:-136.123,0,-33.5531 0/1:18:5,13:5:190:13:486:-38.6473,0,-12.045 1/1:7:0,7:0:0:7:278:-25.3905,-2.10721,0 dDocent_Contig_14412 123 . A C 142.002 . AB=0.363636;ABP=4.78696;AC=3;AF=0.5;AN=6;AO=7;CIGAR=1X;DP=25;DPB=25;DPRA=0;EPP=18.2106;EPPR=42.0968;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=1.73472e-18;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=234;QR=523;RO=18;RPL=0;RPP=18.2106;RPPR=42.0968;RPR=7;RUN=1;SAF=0;SAP=18.2106;SAR=7;SRF=0;SRP=42.0968;SRR=18;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 1/1:2:0,2:0:0:2:68:-6.45788,-0.60206,0 0/0:12:11,1:11:336:1:30:0,-0.612793,-27.5393 0/1:11:7,4:7:187:4:136:-9.26453,0,-13.7825 dDocent_Contig_14413 180 . G C 66.0843 . AB=0.428571;ABP=3.32051;AC=1;AF=0.166667;AN=6;AO=3;CIGAR=1M6I3M2X1M1X;DP=37;DPB=39.25;DPRA=0.466667;EPP=9.52472;EPPR=76.8404;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=113;QR=1135;RO=34;RPL=3;RPP=9.52472;RPPR=76.8404;RPR=0;RUN=1;SAF=0;SAP=9.52472;SAR=3;SRF=0;SRP=76.8404;SRR=34;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|0:20:20,0:20:675:0:0:0,-6.0206,-61.0664 0|1:7:4,3:4:125:3:113:-8.43233,0,-9.4516 0|0:10:10,0:10:335:0:0:0,-3.0103,-30.475 dDocent_Contig_14415 15 . C A 2938.61 . AB=0.736842;ABP=67.8116;AC=3;AF=0.5;AN=6;AO=98;CIGAR=2X;DP=133;DPB=133;DPRA=0;EPP=215.815;EPPR=79.0118;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=3762;QR=1360;RO=35;RPL=0;RPP=215.815;RPPR=79.0118;RPR=98;RUN=1;SAF=98;SAP=215.815;SAR=0;SRF=35;SRP=79.0118;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|1:98:27,71:27:1051:71:2723:-215.725,0,-65.3926 0|1:12:2,10:2:77:10:382:-31.1156,0,-3.69678 0|1:23:6,17:6:232:17:657:-52.5398,0,-14.3254 dDocent_Contig_14417 35 . C A 536.955 . AB=0.416667;ABP=5.9056;AC=3;AF=0.5;AN=6;AO=20;CIGAR=1X;DP=48;DPB=48;DPRA=0;EPP=46.4397;EPPR=63.8115;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=806;QR=1109;RO=28;RPL=0;RPP=46.4397;RPPR=63.8115;RPR=20;RUN=1;SAF=20;SAP=46.4397;SAR=0;SRF=28;SRP=63.8115;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:12:9,3:9:352:3:122:-7.76013,0,-28.4265 0/1:25:11,14:11:432:14:562:-43.3971,0,-31.7055 0/1:11:8,3:8:325:3:122:-8.06116,0,-26.3083 dDocent_Contig_14418 12 . A G 1837.07 . AB=0.242424;ABP=98.0945;AC=1;AF=0.166667;AN=6;AO=40;CIGAR=1X1M1X2M1X;DP=165;DPB=165;DPRA=0;EPP=89.8692;EPPR=120.27;GTI=0;LEN=1;MEANALT=3.33333;MQM=54.65;MQMR=60;NS=3;NUMALT=3;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=1584;QR=2147;RO=54;RPL=0;RPP=89.8692;RPPR=120.27;RPR=40;RUN=1;SAF=40;SAP=89.8692;SAR=0;SRF=54;SRP=120.27;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|0:87:32,8,18,27:32:1276:8,18,27:319,708,1087:-79.9586,-64.3239,-166.999,-31.621,-111.436,-131.285,0,-79.8193,-47.1159,-96.9595 1|0:25:6,1,9,9:6:232:1,9,9:35,359,368:-38.9363,-37.9429,-56.693,-11.3341,-27.5842,-27.6742,-10.3667,-26.6203,0,-26.7107 0|0:53:16,0,13,23:16:639:0,13,23:0,517,913:-70.3354,-75.1519,-127.783,-32.8436,-85.4748,-81.5614,0,-52.6322,-10.3251,-45.7085 dDocent_Contig_14419 10 . A C 74.4176 . AB=0.375;ABP=4.09604;AC=1;AF=0.166667;AN=6;AO=3;CIGAR=1X;DP=16;DPB=16;DPRA=2;EPP=9.52472;EPPR=31.2394;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=122;QR=510;RO=13;RPL=0;RPP=9.52472;RPPR=31.2394;RPR=3;RUN=1;SAF=3;SAP=9.52472;SAR=0;SRF=13;SRP=31.2394;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:8:5,3:5:200:3:122:-8.96425,0,-15.9708 0/0:2:2,0:2:74:0:0:0,-0.60206,-7.02402 0/0:6:6,0:6:236:0:0:0,-1.80618,-21.6088 dDocent_Contig_14420 135 . T C 87.1149 . AB=0.272727;ABP=12.8806;AC=1;AF=0.166667;AN=6;AO=10;CIGAR=1X;DP=129;DPB=129;DPRA=0;EPP=24.725;EPPR=257.073;GTI=0;LEN=1;MEANALT=1.66667;MQM=33;MQMR=58.7778;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=0.940171;PAO=0;PQA=0;PQR=0;PRO=0;QA=363;QR=4392;RO=117;RPL=0;RPP=24.725;RPPR=257.073;RPR=10;RUN=1;SAF=0;SAP=24.725;SAR=10;SRF=0;SRP=257.073;SRR=117;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:84:81,2:81:3059:2:74:0,-19.2101,-266.515 0/1:22:15,6:15:554:6:215:-10.5352,0,-43.6685 0/0:23:21,2:21:779:2:74:0,-0.930099,-64.1863 dDocent_Contig_14421 8 . C T 115.817 . AB=0.147059;ABP=76.5849;AC=2;AF=0.333333;AN=6;AO=10;CIGAR=1X;DP=71;DPB=71;DPRA=11.3333;EPP=24.725;EPPR=135.47;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=3.46945e-18;PAIRED=1;PAIREDR=0.95082;PAO=0;PQA=0;PQR=0;PRO=0;QA=387;QR=2350;RO=61;RPL=0;RPP=24.725;RPPR=135.47;RPR=10;RUN=1;SAF=10;SAP=24.725;SAR=0;SRF=61;SRP=135.47;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:47:40,7:40:1533:7:271:-10.6079,0,-124.093 0/0:3:3,0:3:116:0:0:0,-0.90309,-10.8177 0/1:21:18,3:18:701:3:116:-4.49607,0,-57.1025 dDocent_Contig_14422 15 . T A 93.8966 . AB=0.275;ABP=20.5992;AC=2;AF=0.333334;AN=6;AO=12;CIGAR=5M1I1M2X;DP=48;DPB=50.125;DPRA=0;EPP=29.068;EPPR=70.3259;GTI=0;LEN=1;MEANALT=1.66667;MQM=22.5;MQMR=60;NS=3;NUMALT=2;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=474;QR=1199;RO=31;RPL=0;RPP=29.068;RPPR=70.3259;RPR=12;RUN=1;SAF=12;SAP=29.068;SAR=0;SRF=31;SRP=70.3259;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|1:36:23,4,9:23:882:4,9:156,357:-10.1081,-5.30003,-76.5812,0,-60.7138,-69.6977 0|1:4:1,1,2:1:40:1,2:40,76:-2.75106,0,-3.07731,-1.10115,-1.4507,-3.81165 0|0:8:7,0,1:7:277:0,1:0,41:0,-2.10721,-25.1195,-0.909295,-24.1021,-23.8011 dDocent_Contig_14423 49 . G T 151.904 . AB=0.1375;ABP=94.3207;AC=2;AF=0.333333;AN=6;AO=11;CIGAR=1X;DP=94;DPB=94;DPRA=2.85714;EPP=26.8965;EPPR=178.9;GTI=0;LEN=1;MEANALT=1.5;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=450;QR=3180;RO=81;RPL=0;RPP=26.8965;RPPR=178.9;RPR=11;RUN=1;SAF=11;SAP=26.8965;SAR=0;SRF=81;SRP=178.9;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:62:55,5:55:2161:5:205:-0.367285,0,-176.207 0/1:18:12,6:12:481:6:245:-17.0109,0,-38.2223 0/0:14:14,0:14:538:0:0:0,-4.21442,-48.7651 dDocent_Contig_14425 12 . T A 2070.53 . AB=0.15534;ABP=109.286;AC=1;AF=0.166667;AN=6;AO=16;CIGAR=4M1X2M2D5M1X5M;DP=103;DPB=97.8;DPRA=0;EPP=37.7539;EPPR=35.5824;GTI=0;LEN=1;MEANALT=3.66667;MQM=60;MQMR=60;NS=3;NUMALT=3;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=627;QR=590;RO=15;RPL=0;RPP=37.7539;RPPR=35.5824;RPR=16;RUN=1;SAF=16;SAP=37.7539;SAR=0;SRF=15;SRP=35.5824;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|0:47:9,1,9,27:9:355:1,9,27:35,349,1018:-80.7295,-80.5916,-109.504,-54.7622,-81.1312,-81.269,0,-26.3796,-0.54337,-21.0983 1|0:15:0,2,4,8:0:0:2,4,8:74,156,305:-37.9236,-31.869,-31.267,-25.0922,-19.0351,-23.8881,-12.8828,-6.81888,0,-10.4746 0|0:41:6,1,3,31:6:235:1,3,31:38,122,1168:-93.8836,-92.5732,-111.598,-85.624,-101.834,-104.047,0,-16.204,-9.2507,-9.98697 dDocent_Contig_14426 65 . A G 88.8345 . AB=0.263158;ABP=12.2676;AC=2;AF=0.333333;AN=6;AO=5;CIGAR=2X;DP=55;DPB=55;DPRA=0.263889;EPP=13.8677;EPPR=111.584;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=193;QR=1847;RO=50;RPL=5;RPP=13.8677;RPPR=111.584;RPR=0;RUN=1;SAF=5;SAP=13.8677;SAR=0;SRF=50;SRP=111.584;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|0:36:36,0:36:1322:0:0:0,-10.8371,-119.255 0|1:8:5,3:5:181:3:117:-8.50105,0,-14.2333 0|1:11:9,2:9:344:2:76:-3.90348,0,-28.0067 dDocent_Contig_14427 119 . C A 31.7162 . AB=0.25;ABP=7.35324;AC=1;AF=0.166667;AN=6;AO=4;CIGAR=1X;DP=80;DPB=80;DPRA=1.23913;EPP=11.6962;EPPR=163.699;GTI=0;LEN=1;MEANALT=1.5;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=156;QR=2738;RO=74;RPL=0;RPP=11.6962;RPPR=163.699;RPR=4;RUN=1;SAF=0;SAP=11.6962;SAR=4;SRF=0;SRP=163.699;SRR=74;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:49:45,2:45:1656:2:78:0,-7.12714,-141.916 0/1:8:6,2:6:217:2:78:-4.99523,0,-17.4718 0/0:23:23,0:23:865:0:0:0,-6.92369,-78.1689 dDocent_Contig_14428 43 . T C 40.7966 . AB=0.230769;ABP=11.1951;AC=2;AF=0.333333;AN=6;AO=3;CIGAR=1X;DP=19;DPB=19;DPRA=1.08333;EPP=9.52472;EPPR=37.7539;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=0;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=119;QR=648;RO=16;RPL=0;RPP=9.52472;RPPR=37.7539;RPR=3;RUN=1;SAF=3;SAP=9.52472;SAR=0;SRF=16;SRP=37.7539;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:6:6,0:6:244:0:0:0,-1.80618,-22.3388 0/1:9:7,2:7:285:2:78:-4.69351,0,-23.3151 0/1:4:3,1:3:119:1:41:-2.89045,0,-9.89089 dDocent_Contig_14429 20 . G T 635.361 . AB=0.565217;ABP=3.86001;AC=4;AF=0.666667;AN=6;AO=21;CIGAR=1X;DP=31;DPB=31;DPRA=0;EPP=48.6112;EPPR=24.725;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=810;QR=399;RO=10;RPL=0;RPP=48.6112;RPPR=24.725;RPR=21;RUN=1;SAF=21;SAP=48.6112;SAR=0;SRF=10;SRP=24.725;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:13:5,8:5:195:8:309:-24.2533,0,-14.007 1/1:8:0,8:0:0:8:299:-27.2545,-2.40824,0 0/1:10:5,5:5:204:5:202:-15.5512,0,-15.7337 dDocent_Contig_14430 122 . T C 673.105 . AB=0.131579;ABP=47.8112;AC=0;AF=0;AN=6;AO=5;CIGAR=1X3M1X;DP=60;DPB=60;DPRA=0;EPP=13.8677;EPPR=57.2971;GTI=0;LEN=1;MEANALT=2;MQM=60;MQMR=60;NS=3;NUMALT=2;ODDS=6.93889e-18;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=153;QR=833;RO=25;RPL=0;RPP=13.8677;RPPR=57.2971;RPR=5;RUN=1;SAF=0;SAP=13.8677;SAR=5;SRF=0;SRP=57.2971;SRR=25;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|0:17:7,0,10:7:233:0,10:0,318:-23.8118,-25.9191,-44.7818,0,-19.1894,-16.1791 0|0:5:3,0,2:3:102:0,2:0,68:-4.95273,-5.85582,-14.1297,0,-8.61381,-8.01175 0|0:38:15,5,18:15:498:5,18:153,600:-44.0687,-36.3284,-75.1136,0,-28.0553,-34.8918 dDocent_Contig_14431 116 . A T 38.0883 . AB=0.5;ABP=3.0103;AC=1;AF=0.166667;AN=6;AO=2;CIGAR=1X;DP=34;DPB=34;DPRA=0.266667;EPP=7.35324;EPPR=72.4974;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=72;QR=1140;RO=32;RPL=0;RPP=7.35324;RPPR=72.4974;RPR=2;RUN=1;SAF=0;SAP=7.35324;SAR=2;SRF=0;SRP=72.4974;SRR=32;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:24:24,0:24:853:0:0:0,-7.22472,-77.0909 0/1:4:2,2:2:71:2:72:-5.6326,0,-5.53794 0/0:6:6,0:6:216:0:0:0,-1.80618,-19.7905 dDocent_Contig_14432 84 . C T 139.996 . AB=0.35;ABP=6.91895;AC=1;AF=0.166667;AN=6;AO=7;CIGAR=1X;DP=30;DPB=30;DPRA=4;EPP=18.2106;EPPR=52.9542;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=239;QR=788;RO=23;RPL=7;RPP=18.2106;RPPR=52.9542;RPR=0;RUN=1;SAF=7;SAP=18.2106;SAR=0;SRF=23;SRP=52.9542;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:7:7,0:7:237:0:0:0,-2.10721,-21.6614 0/0:3:3,0:3:101:0:0:0,-0.90309,-9.42361 0/1:20:13,7:13:450:7:239:-15.8233,0,-34.8106 dDocent_Contig_14433 16 . A T 1748.55 . AB=0.0989011;ABP=130.173;AC=0;AF=0;AN=6;AO=9;CIGAR=1X3M1X;DP=158;DPB=158;DPRA=0;EPP=22.5536;EPPR=185.414;GTI=0;LEN=1;MEANALT=2;MQM=60;MQMR=60;NS=3;NUMALT=2;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=353;QR=3327;RO=84;RPL=0;RPP=22.5536;RPPR=185.414;RPR=9;RUN=1;SAF=9;SAP=22.5536;SAR=0;SRF=84;SRP=185.414;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|0:91:39,9,43:39:1534:9,43:353,1683:-126.635,-109.345,-232.806,0,-97.1407,-113.226 0|0:14:8,0,6:8:319:0,6:0,202:-14.2872,-16.6954,-43.0019,0,-26.6694,-24.8632 0|0:53:37,0,16:37:1474:0,16:0,612:-39.4561,-50.5942,-171.981,0,-121.774,-116.958 dDocent_Contig_14434 12 . T C 88.6695 . AB=0.266667;ABP=10.1038;AC=1;AF=0.166667;AN=6;AO=4;CIGAR=2X;DP=25;DPB=25;DPRA=3;EPP=11.6962;EPPR=42.0968;GTI=0;LEN=1;MEANALT=2;MQM=60;MQMR=60;NS=3;NUMALT=2;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=159;QR=734;RO=18;RPL=0;RPP=11.6962;RPPR=42.0968;RPR=4;RUN=1;SAF=4;SAP=11.6962;SAR=0;SRF=18;SRP=42.0968;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|0:8:8,0,0:8:326:0,0:0,0:0,-2.40824,-29.7097,-2.40824,-29.7097,-29.7097 0|0:2:2,0,0:2:82:0,0:0,0:0,-0.60206,-7.77968,-0.60206,-7.77968,-7.77968 0|1:15:8,4,3:8:326:4,3:159,115:-10.6901,0,-25.708,-3.66803,-17.4823,-29.6662 dDocent_Contig_14437 13 . C T 969.641 . AB=0.0521739;ABP=203.333;AC=0;AF=0;AN=6;AO=6;CIGAR=3M1X1M;DP=115;DPB=115;DPRA=0;EPP=16.0391;EPPR=98.5551;GTI=0;LEN=1;MEANALT=4.66667;MQM=60;MQMR=59.7955;NS=3;NUMALT=5;ODDS=0;PAIRED=1;PAIREDR=0.977273;PAO=0;PQA=0;PQR=0;PRO=0;QA=237;QR=1687;RO=44;RPL=0;RPP=16.0391;RPPR=98.5551;RPR=6;RUN=1;SAF=6;SAP=16.0391;SAR=0;SRF=44;SRP=98.5551;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|0:35:21,0,0,9,3,2:21:794:0,0,9,3,2:0,0,359,121,74:-23.0095,-29.3311,-94.3974,-29.3311,-94.3974,-94.3974,0,-65.0672,-65.0672,-62.3579,-19.4407,-84.5074,-84.5074,-55.1761,-83.6043,-23.2827,-88.3459,-88.3459,-59.0158,-78.4559,-87.7439 0|0:45:10,0,3,15,11,3:10:384:0,3,15,11,3:0,120,590,442,122:-48.3901,-51.4004,-82.8941,-42.98,-74.4728,-73.5697,-4.00659,-35.5002,-27.0805,-30.9848,-15.9013,-47.396,-38.9754,0,-44.0846,-41.3351,-72.8292,-64.4081,-25.4345,-37.3303,-71.9261 0|0:35:13,3,0,11,6,1:13:509:3,0,11,6,1:115,0,434,238,41:-31.0874,-27.3127,-68.2629,-35.0008,-69.166,-76.8575,0,-34.1747,-41.8633,-38.5519,-15.711,-49.8804,-57.5706,-22.575,-55.7645,-31.6152,-65.7813,-73.4726,-38.478,-54.1856,-73.1716 dDocent_Contig_14439 61 . C T 204.454 . AB=0.294118;ABP=15.5282;AC=2;AF=0.333333;AN=6;AO=10;CIGAR=1X;DP=57;DPB=57;DPRA=0.73913;EPP=24.725;EPPR=105.07;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=1.73472e-18;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=366;QR=1867;RO=47;RPL=10;RPP=24.725;RPPR=105.07;RPR=0;RUN=1;SAF=10;SAP=24.725;SAR=0;SRF=47;SRP=105.07;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:23:23,0:23:900:0:0:0,-6.92369,-81.2996 0/1:21:19,2:19:764:2:79:-1.17561,0,-62.7586 0/1:13:5,8:5:203:8:287:-22.2481,0,-14.7397 dDocent_Contig_14440 15 . G C 66.5451 . AB=0.333333;ABP=5.18177;AC=1;AF=0.166667;AN=6;AO=3;CIGAR=1X;DP=109;DPB=109;DPRA=0.18;EPP=9.52472;EPPR=233.186;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=120;QR=4270;RO=106;RPL=0;RPP=9.52472;RPPR=233.186;RPR=3;RUN=1;SAF=3;SAP=9.52472;SAR=0;SRF=106;SRP=233.186;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:70:70,0:70:2825:0:0:0,-21.0721,-254.349 0/1:9:6,3:6:236:3:120:-8.47842,0,-18.9022 0/0:30:30,0:30:1209:0:0:0,-9.0309,-109.08 dDocent_Contig_14441 9 . T A 255.54 . AB=0.102564;ABP=56.5176;AC=3;AF=0.5;AN=6;AO=4;CIGAR=1X4M2X2M;DP=70;DPB=63.3333;DPRA=0;EPP=11.6962;EPPR=79.0118;GTI=0;LEN=1;MEANALT=2;MQM=37;MQMR=60;NS=3;NUMALT=2;ODDS=6.93889e-18;PAIRED=0;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=148;QR=1364;RO=35;RPL=0;RPP=11.6962;RPPR=79.0118;RPR=4;RUN=1;SAF=4;SAP=11.6962;SAR=0;SRF=35;SRP=79.0118;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|1:39:21,14,4:21:817:14,4:547,148:-10.0042,0,-62.9672,-5.25446,-56.1571,-71.3257 0|1:7:2,5,0:2:80:5,0:197,0:-9.27745,0,-5.48458,-9.87951,-6.98973,-16.5131 0|1:24:12,11,0:12:467:11,0:424,0:-11.7951,0,-35.0865,-15.4075,-38.3978,-53.8784 dDocent_Contig_14442 11 . T C 4804.34 . AB=0.107843;ABP=139.26;AC=5;AF=0.833334;AN=6;AO=11;CIGAR=1X2M;DP=165;DPB=165;DPRA=0.809524;EPP=26.8965;EPPR=26.8965;GTI=0;LEN=1;MEANALT=2.5;MQM=54.5455;MQMR=60;NS=3;NUMALT=2;ODDS=0;PAIRED=0.636364;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=437;QR=432;RO=11;RPL=0;RPP=26.8965;RPPR=26.8965;RPR=11;RUN=1;SAF=11;SAP=26.8965;SAR=0;SRF=11;SRP=26.8965;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 1|1:66:5,54,7:5:199:54,7:2125,276:-179.215,-5.92203,-6.05652,-158.403,0,-172.682 0|1:36:6,25,4:6:233:25,4:978,161:-78.6072,0,-11.6228,-67.1427,-5.8701,-85.0838 1|1:63:0,63,0:0:0:63,0:2511,0:-226.134,-18.9649,0,-226.134,-18.9649,-226.134 dDocent_Contig_14444 31 . G A 238.99 . AB=0.322581;ABP=11.486;AC=2;AF=0.333333;AN=6;AO=10;CIGAR=1X;DP=62;DPB=62;DPRA=0.5;EPP=24.725;EPPR=115.927;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=400;QR=2015;RO=52;RPL=0;RPP=24.725;RPPR=115.927;RPR=10;RUN=1;SAF=10;SAP=24.725;SAR=0;SRF=52;SRP=115.927;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:31:31,0:31:1205:0:0:0,-9.33193,-108.725 0/1:15:9,6:9:338:6:244:-17.8234,0,-26.2516 0/1:16:12,4:12:472:4:156:-9.59847,0,-38.0129 dDocent_Contig_14447 50 . C T 423.753 . AB=0.277778;ABP=18.4519;AC=3;AF=0.5;AN=6;AO=10;CIGAR=1X2M1X;DP=36;DPB=36;DPRA=0;EPP=24.725;EPPR=33.4109;GTI=0;LEN=1;MEANALT=1.66667;MQM=60;MQMR=60;NS=3;NUMALT=2;ODDS=6.93889e-18;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=395;QR=552;RO=14;RPL=10;RPP=24.725;RPPR=33.4109;RPR=0;RUN=1;SAF=10;SAP=24.725;SAR=0;SRF=14;SRP=33.4109;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 1|0:22:5,6,11:5:196:6,11:241,430:-37.5898,-19.2319,-33.5431,-3.75183,0,-16.5532 0|1:6:4,2,0:4:156:2,0:80,0:-5.78561,0,-12.6106,-6.98973,-13.2127,-19.8062 0|1:8:5,2,1:5:200:2,1:74,41:-4.522,0,-15.8647,-2.62984,-13.081,-18.8251 dDocent_Contig_14448 17 . C T 63.4521 . AB=0.142857;ABP=34.0313;AC=1;AF=0.166667;AN=6;AO=5;CIGAR=2X1M1X2M1X2M1X1M1I9M3I2M;DP=82;DPB=82.9091;DPRA=1.36364;EPP=13.8677;EPPR=152.842;GTI=0;LEN=1;MEANALT=3;MQM=60;MQMR=60;NS=3;NUMALT=3;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=200;QR=2705;RO=69;RPL=0;RPP=13.8677;RPPR=152.842;RPR=5;RUN=1;SAF=5;SAP=13.8677;SAR=0;SRF=69;SRP=152.842;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|1:28:18,4,1,4:18:712:4,1,4:160,41,159:-7.76445,0,-57.3927,-9.79736,-55.2121,-68.0922,-0.092345,-45.5067,-55.3032,-57.4838 0|0:22:22,0,0,0:22:839:0,0,0:0,0,0:0,-6.62266,-75.8244,-6.62266,-75.8244,-75.8244,-6.62266,-75.8244,-75.8244,-75.8244 0|0:32:29,1,2,0:29:1154:1,2,0:40,81,0:0,-5.43644,-100.15,-2.04741,-93.7719,-96.465,-8.72987,-100.451,-97.067,-103.747 dDocent_Contig_14449 106 . N A 346.771 . AB=0;ABP=0;AC=4;AF=1;AN=4;AO=10;CIGAR=2X;DP=13;DPB=13;DPRA=3.33333;EPP=24.725;EPPR=0;GTI=0;LEN=1;MEANALT=1;MQM=39.3;MQMR=0;NS=2;NUMALT=2;ODDS=0;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=326;QR=0;RO=0;RPL=0;RPP=24.725;RPPR=0;RPR=10;RUN=1;SAF=0;SAP=24.725;SAR=10;SRF=0;SRP=0;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 1|1:3:0,3,0:0:0:3,0:90,0:-8.02717,-0.90309,0,-8.02717,-0.90309,-8.02717 1|1:10:0,0,10:0:0:0,10:0,326:-26.3484,-26.3484,-26.3484,-3.0103,-3.0103,0 .:.:.:.:.:.:.:. dDocent_Contig_14452 7 . A T 830.062 . AB=0.301724;ABP=42.621;AC=2;AF=0.333333;AN=6;AO=35;CIGAR=1X;DP=124;DPB=124;DPRA=7.25;EPP=79.0118;EPPR=196.271;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=57.7528;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=0.955056;PAO=0;PQA=0;PQR=0;PRO=0;QA=1342;QR=3411;RO=89;RPL=0;RPP=79.0118;RPPR=196.271;RPR=35;RUN=1;SAF=35;SAP=79.0118;SAR=0;SRF=89;SRP=196.271;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:87:60,27:60:2293:27:1034:-67.1771,0,-172.653 0/0:8:8,0:8:306:0:0:0,-2.40824,-25.7104 0/1:29:21,8:21:812:8:308:-19.3519,0,-64.6753 dDocent_Contig_14453 55 . A G 36.2075 . AB=0.142857;ABP=26.2761;AC=1;AF=0.166667;AN=6;AO=3;CIGAR=1X;DP=32;DPB=32;DPRA=3.81818;EPP=9.52472;EPPR=65.983;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=123;QR=1151;RO=29;RPL=3;RPP=9.52472;RPPR=65.983;RPR=0;RUN=1;SAF=3;SAP=9.52472;SAR=0;SRF=29;SRP=65.983;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:21:18,3:18:717:3:123:-5.14316,0,-58.5305 0/0:2:2,0:2:82:0:0:0,-0.60206,-7.77968 0/0:9:9,0:9:352:0:0:0,-2.70927,-32.0334 dDocent_Contig_14454 20 . C T 264.759 . AB=0.244898;ABP=30.7077;AC=2;AF=0.333333;AN=6;AO=12;CIGAR=1X;DP=75;DPB=75;DPRA=0.942308;EPP=29.068;EPPR=139.813;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=488;QR=2520;RO=63;RPL=0;RPP=29.068;RPPR=139.813;RPR=12;RUN=1;SAF=12;SAP=29.068;SAR=0;SRF=63;SRP=139.813;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:43:32,11:32:1294:11:447:-27.6416,0,-103.775 0/1:6:5,1:5:196:1:41:-2.28839,0,-16.2071 0/0:26:26,0:26:1030:0:0:0,-7.82678,-92.9858 dDocent_Contig_14455 16 . A T 53.1815 . AB=0.151515;ABP=37.8197;AC=2;AF=0.333333;AN=6;AO=5;CIGAR=1M4D1M1X;DP=35;DPB=32.1429;DPRA=8.25;EPP=13.8677;EPPR=68.1545;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=200;QR=1141;RO=30;RPL=0;RPP=13.8677;RPPR=68.1545;RPR=5;RUN=1;SAF=5;SAP=13.8677;SAR=0;SRF=30;SRP=68.1545;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|1:22:19,3:19:719:3:123:-4.84213,0,-58.4108 0|0:2:2,0:2:78:0:0:0,-0.60206,-7.4033 0|1:11:9,2:9:344:2:77:-3.99687,0,-28.0053 dDocent_Contig_14457 190 . G A 176.857 . AB=0.225;ABP=29.2851;AC=2;AF=0.333333;AN=6;AO=9;CIGAR=2X;DP=41;DPB=41;DPRA=20;EPP=22.5536;EPPR=68.1545;GTI=0;LEN=1;MEANALT=1.5;MQM=60;MQMR=60;NS=3;NUMALT=2;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=358;QR=1181;RO=30;RPL=9;RPP=22.5536;RPPR=68.1545;RPR=0;RUN=1;SAF=0;SAP=22.5536;SAR=9;SRF=0;SRP=68.1545;SRR=30;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|1:22:19,3,0:19:756:3,0:115,0:-4.10055,0,-61.7365,-9.82012,-62.6396,-72.0748 0|0:1:1,0,0:1:41:0,0:0,0:0,-0.30103,-4.09457,-0.30103,-4.09457,-4.09457 0|1:18:10,6,2:10:384:6,2:243,66:-17.1054,0,-29.7791,-15.3456,-26.8029,-46.246 dDocent_Contig_14458 71 . T G 242.232 . AB=0.244898;ABP=30.7077;AC=2;AF=0.333333;AN=6;AO=12;CIGAR=1X;DP=101;DPB=101;DPRA=0.471154;EPP=29.068;EPPR=196.271;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=59.764;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=464;QR=3370;RO=89;RPL=12;RPP=29.068;RPPR=196.271;RPR=0;RUN=1;SAF=12;SAP=29.068;SAR=0;SRF=89;SRP=196.271;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:52:52,0:52:2029:0:0:0,-15.6536,-182.817 0/1:13:8,5:8:295:5:193:-13.8269,0,-22.9812 0/1:36:29,7:29:1046:7:271:-13.9192,0,-83.5982 dDocent_Contig_14459 45 . T C 523.418 . AB=0.271605;ABP=39.7109;AC=2;AF=0.333333;AN=6;AO=22;CIGAR=4M1X2M;DP=81;DPB=80.2857;DPRA=0;EPP=50.7827;EPPR=115.927;GTI=0;LEN=1;MEANALT=2;MQM=60;MQMR=59.2308;NS=3;NUMALT=3;ODDS=6.93889e-18;PAIRED=1;PAIREDR=0.788462;PAO=0;PQA=0;PQR=0;PRO=0;QA=885;QR=2017;RO=52;RPL=0;RPP=50.7827;RPPR=115.927;RPR=22;RUN=1;SAF=22;SAP=50.7827;SAR=0;SRF=52;SRP=115.927;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|1:52:33,4,0,15:33:1274:4,0,15:138,0,599:-39.4442,-38.1792,-141.556,-49.3782,-142.76,-153.967,0,-93.42,-104.626,-100.11 0|0:11:6,1,2,2:6:235:1,2,2:35,82,82:-4.96993,-3.94029,-22.9513,0,-16.4814,-18.722,0,-16.4814,-12.5505,-18.722 0|1:18:13,0,0,5:13:508:0,0,5:0,0,204:-13.3255,-17.2389,-58.9694,-17.2389,-58.9694,-58.9694,0,-42.1332,-42.1332,-40.6281 dDocent_Contig_14460 12 . A C 67.1432 . AB=0.116883;ABP=101.178;AC=2;AF=0.333333;AN=6;AO=9;CIGAR=1X;DP=169;DPB=169;DPRA=0.418478;EPP=22.5536;EPPR=350.446;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=363;QR=6369;RO=160;RPL=0;RPP=22.5536;RPPR=350.446;RPR=9;RUN=1;SAF=9;SAP=22.5536;SAR=0;SRF=160;SRP=350.446;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:92:92,0:92:3662:0:0:0,-27.6948,-329.588 0/1:10:7,3:7:277:3:123:-8.45449,0,-22.2885 0/1:67:61,6:61:2430:6:240:-1.80483,0,-198.67 dDocent_Contig_14462 8 . A G 579.331 . AB=0.513514;ABP=3.12768;AC=3;AF=0.5;AN=6;AO=38;CIGAR=1X;DP=74;DPB=74;DPRA=0;EPP=85.5263;EPPR=81.1833;GTI=0;LEN=1;MEANALT=1;MQM=25.1053;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=0;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=1492;QR=1377;RO=36;RPL=0;RPP=85.5263;RPPR=81.1833;RPR=38;RUN=1;SAF=38;SAP=85.5263;SAR=0;SRF=36;SRP=81.1833;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:41:14,27:14:536:27:1064:-47.1863,0,-36.242 0/1:7:3,4:3:117:4:160:-7.09087,0,-8.80317 0/1:26:19,7:19:724:7:268:-9.17875,0,-57.6643 dDocent_Contig_14463 100 . N A 91.4472 . AB=0;ABP=0;AC=2;AF=1;AN=2;AO=3;CIGAR=4X;DP=3;DPB=3;DPRA=0;EPP=9.52472;EPPR=0;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=0;NS=1;NUMALT=1;ODDS=6.68461;PAIRED=1;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=98;QR=0;RO=0;RPL=3;RPP=9.52472;RPPR=0;RPR=0;RUN=1;SAF=3;SAP=9.52472;SAR=0;SRF=0;SRP=0;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 1|1:3:0,3:0:0:3:98:-9.14417,-0.90309,0 .:.:.:.:.:.:.:. .:.:.:.:.:.:.:. dDocent_Contig_14465 172 . A G 112.708 . AB=0;ABP=0;AC=2;AF=0.333333;AN=6;AO=3;CIGAR=1X;DP=30;DPB=30;DPRA=0.222222;EPP=9.52472;EPPR=61.6401;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=119;QR=1082;RO=27;RPL=3;RPP=9.52472;RPPR=61.6401;RPR=0;RUN=1;SAF=0;SAP=9.52472;SAR=3;SRF=0;SRP=61.6401;SRR=27;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:14:14,0:14:566:0:0:0,-4.21442,-51.2823 1/1:3:0,3:0:0:3:119:-11.0945,-0.90309,0 0/0:13:13,0:13:516:0:0:0,-3.91339,-46.7852 dDocent_Contig_14466 7 . A G 133.894 . AB=0.28125;ABP=16.3106;AC=3;AF=0.5;AN=6;AO=9;CIGAR=1X;DP=32;DPB=32;DPRA=0;EPP=22.5536;EPPR=52.9542;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=306;QR=886;RO=23;RPL=0;RPP=22.5536;RPPR=52.9542;RPR=9;RUN=1;SAF=9;SAP=22.5536;SAR=0;SRF=23;SRP=52.9542;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:10:7,3:7:271:3:85:-4.92035,0,-21.746 0/1:5:3,2:3:113:2:74:-5.52073,0,-9.03382 0/1:17:13,4:13:502:4:147:-8.47099,0,-40.411 dDocent_Contig_14467 13 . T C 1289.84 . AB=0.547945;ABP=4.46786;AC=4;AF=0.666667;AN=6;AO=43;CIGAR=1X;DP=76;DPB=76;DPRA=0;EPP=96.3836;EPPR=74.6689;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=3.46945e-18;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=1705;QR=1305;RO=33;RPL=0;RPP=96.3836;RPPR=74.6689;RPR=43;RUN=1;SAF=43;SAP=96.3836;SAR=0;SRF=33;SRP=74.6689;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:46:20,26:20:786:26:1033:-79.42,0,-57.2098 1/1:3:0,3:0:0:3:123:-11.4648,-0.90309,0 0/1:27:13,14:13:519:14:549:-41.6215,0,-38.9292 dDocent_Contig_14468 56 . T C 33.4336 . AB=0.142857;ABP=26.2761;AC=1;AF=0.166667;AN=6;AO=3;CIGAR=1X;DP=38;DPB=38;DPRA=2.47059;EPP=9.52472;EPPR=79.0118;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=120;QR=1313;RO=35;RPL=3;RPP=9.52472;RPPR=79.0118;RPR=0;RUN=1;SAF=3;SAP=9.52472;SAR=0;SRF=35;SRP=79.0118;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:21:18,3:18:679:3:120:-4.86568,0,-55.1176 0/0:2:2,0:2:78:0:0:0,-0.60206,-7.40278 0/0:15:15,0:15:556:0:0:0,-4.51545,-50.3715 dDocent_Contig_14469 23 . T C 2314.86 . AB=0.760417;ABP=59.5591;AC=3;AF=0.5;AN=6;AO=73;CIGAR=1X;DP=96;DPB=96;DPRA=0;EPP=161.528;EPPR=52.9542;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=2930;QR=908;RO=23;RPL=0;RPP=161.528;RPPR=52.9542;RPR=73;RUN=1;SAF=73;SAP=161.528;SAR=0;SRF=23;SRP=52.9542;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:74:16,58:16:632:58:2333:-187.848,0,-34.9308 0/1:9:1,8:1:34:8:315:-26.0043,0,-0.689641 0/1:13:6,7:6:242:7:282:-21.8392,0,-18.2439 dDocent_Contig_14470 21 . T C 1255.39 . AB=0.460674;ABP=4.20583;AC=4;AF=0.666667;AN=6;AO=41;CIGAR=1X1M1D3M;DP=89;DPB=79.6667;DPRA=0;EPP=92.0407;EPPR=74.6689;GTI=0;LEN=1;MEANALT=2;MQM=60;MQMR=60;NS=3;NUMALT=2;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=1660;QR=1286;RO=33;RPL=0;RPP=92.0407;RPPR=74.6689;RPR=41;RUN=1;SAF=41;SAP=92.0407;SAR=0;SRF=33;SRP=74.6689;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 1|1:28:6,7,15:6:233:7,15:280,607:-52.1792,-30.9213,-47.953,-3.93358,0,-18.5564 0|1:22:15,0,6:15:587:0,6:0,243:-15.6971,-20.2126,-68.4871,0,-48.4429,-46.6367 0|1:39:12,7,20:12:466:7,20:277,810:-63.1859,-44.0044,-80.1778,0,-15.4833,-32.2616 dDocent_Contig_14471 98 . N A 58.3963 . AB=0;ABP=0;AC=2;AF=1;AN=2;AO=2;CIGAR=2X;DP=2;DPB=5.5;DPRA=0;EPP=7.35324;EPPR=0;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=0;NS=1;NUMALT=1;ODDS=5.99146;PAIRED=1;PAIREDR=0;PAO=2;PQA=69;PQR=0;PRO=0;QA=65;QR=0;RO=0;RPL=2;RPP=7.35324;RPPR=0;RPR=0;RUN=1;SAF=2;SAP=7.35324;SAR=0;SRF=0;SRP=0;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 1|1:2:0,2:0:0:2:65:-5.83855,-0.60206,0 .:.:.:.:.:.:.:. .:.:.:.:.:.:.:. dDocent_Contig_14472 7 . A G 918.741 . AB=0.203883;ABP=81.4574;AC=2;AF=0.333333;AN=6;AO=21;CIGAR=1X3M1X;DP=103;DPB=103;DPRA=0;EPP=40.3389;EPPR=111.584;GTI=0;LEN=1;MEANALT=2.33333;MQM=49.8095;MQMR=60;NS=3;NUMALT=2;ODDS=0;PAIRED=0.428571;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=759;QR=1899;RO=50;RPL=0;RPP=48.6112;RPPR=111.584;RPR=21;RUN=1;SAF=20;SAP=40.3389;SAR=1;SRF=50;SRP=111.584;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|0:54:31,5,17:31:1171:5,17:189,677:-46.418,-40.3715,-134.83,0,-80.5907,-90.8561 1|0:15:3,5,7:3:113:5,7:166,280:-24.5908,-13.118,-20.8691,-3.08187,0,-10.2598 0|1:34:16,11,7:16:615:11,7:404,283:-26.388,0,-47.1622,-7.85122,-27.1355,-56.2521 dDocent_Contig_14473 11 . G C 14254.6 . AB=0.706056;ABP=252.685;AC=3;AF=0.5;AN=6;AO=478;CIGAR=1X2M;DP=677;DPB=677;DPRA=0;EPP=1040.97;EPPR=302.673;GTI=0;LEN=1;MEANALT=5.66667;MQM=53.2971;MQMR=51.7029;NS=3;NUMALT=2;ODDS=0;PAIRED=0.949791;PAIREDR=0.188406;PAO=0;PQA=0;PQR=0;PRO=0;QA=18208;QR=5391;RO=138;RPL=0;RPP=1040.97;RPPR=302.673;RPR=478;RUN=1;SAF=478;SAP=1040.97;SAR=0;SRF=138;SRP=302.673;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|1:384:41,16,306:41:1607:16,306:620,11766:-941.81,-903.239,-1028.41,0,-79.0797,-37.8784 0|1:171:62,7,98:62:2400:7,98:267,3627:-273.111,-269.869,-443.88,0,-154.196,-146.603 0|1:122:35,8,74:35:1384:8,74:298,2815:-216.062,-202.206,-308.716,0,-84.5276,-86.6425 dDocent_Contig_14475 22 . G T 267.066 . AB=0.220339;ABP=43.0905;AC=1;AF=0.166667;AN=6;AO=15;CIGAR=1M2D1M1X;DP=291;DPB=285.2;DPRA=0.610687;EPP=35.5824;EPPR=593.651;GTI=0;LEN=1;MEANALT=1.5;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=590;QR=10653;RO=272;RPL=0;RPP=35.5824;RPPR=593.651;RPR=15;RUN=1;SAF=15;SAP=35.5824;SAR=0;SRF=272;SRP=593.651;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|1:59:45,13:45:1780:13:508:-28.2295,0,-142.602 0|0:131:128,0:128:5040:0:0:0,-38.5318,-453.229 0|0:101:99,2:99:3833:2:82:0,-22.6244,-337.248 dDocent_Contig_14480 180 . C A 1210.61 . AB=0.365854;ABP=22.2358;AC=3;AF=0.5;AN=6;AO=45;CIGAR=1X;DP=123;DPB=123;DPRA=0;EPP=100.727;EPPR=172.385;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=1807;QR=3087;RO=78;RPL=45;RPP=100.727;RPPR=172.385;RPR=0;RUN=1;SAF=0;SAP=100.727;SAR=45;SRF=0;SRP=172.385;SRR=78;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:96:56,40:56:2208:40:1614:-116.583,0,-169.99 0/1:8:6,2:6:242:2:81:-5.27749,0,-19.7487 0/1:19:16,3:16:637:3:112:-4.72322,0,-51.9418 dDocent_Contig_14481 32 . A T 90.6993 . AB=0.444444;ABP=3.25157;AC=1;AF=0.166667;AN=6;AO=4;CIGAR=1X;DP=27;DPB=27;DPRA=1;EPP=3.0103;EPPR=52.9542;GTI=0;LEN=1;MEANALT=1;MQM=46;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=0;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=150;QR=885;RO=23;RPL=4;RPP=11.6962;RPPR=52.9542;RPR=0;RUN=1;SAF=2;SAP=3.0103;SAR=2;SRF=23;SRP=52.9542;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:14:14,0:14:530:0:0:0,-4.21442,-48.0368 0/1:9:5,4:5:193:4:150:-10.8938,0,-15.0312 0/0:4:4,0:4:162:0:0:0,-1.20412,-14.967 dDocent_Contig_14482 15 . C A 2840.13 . AB=0.17037;ABP=130.419;AC=0;AF=0;AN=6;AO=23;CIGAR=2X2M8I1X;DP=135;DPB=171.8;DPRA=0;EPP=52.9542;EPPR=42.0968;GTI=0;LEN=1;MEANALT=2.33333;MQM=19;MQMR=60;NS=3;NUMALT=3;ODDS=0;PAIRED=0;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=896;QR=719;RO=18;RPL=0;RPP=52.9542;RPPR=42.0968;RPR=23;RUN=1;SAF=23;SAP=52.9542;SAR=0;SRF=18;SRP=42.0968;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|0:64:11,5,7,41:11:441:5,7,41:204,278,1644:-132.225,-118.701,-153.532,-125.724,-145.222,-159.947,0,-19.5368,-26.6125,-24.0453 0|0:6:1,0,2,3:1:37:0,2,3:0,79,121:-9.80116,-10.1022,-13.1379,-7.37644,-10.3952,-9.79313,0,-3.08707,-0.396136,-2.18398 0|0:65:6,0,14,45:6:241:0,14,45:0,539,1808:-147.339,-149.145,-169.009,-129.538,-149.397,-145.183,0,-19.9226,-0.413197,-6.37625 dDocent_Contig_14484 10 . T C 748.647 . AB=0.15625;ABP=101.541;AC=1;AF=0.166667;AN=6;AO=15;CIGAR=1X3M1X;DP=112;DPB=112;DPRA=0;EPP=35.5824;EPPR=148.499;GTI=0;LEN=1;MEANALT=2;MQM=60;MQMR=60;NS=3;NUMALT=2;ODDS=1.38778e-17;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=599;QR=2638;RO=67;RPL=0;RPP=35.5824;RPPR=148.499;RPR=15;RUN=1;SAF=15;SAP=35.5824;SAR=0;SRF=67;SRP=148.499;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|1:64:39,13,12:39:1537:13,12:523,489:-31.3602,0,-122.526,-2.75616,-86.0949,-125.588 0|0:16:6,0,10:6:237:0,10:0,383:-30.0003,-31.8064,-51.3132,0,-19.8968,-16.8865 0|0:32:22,2,8:22:864:2,8:76,312:-19.0268,-19.419,-89.8748,0,-64.8361,-68.6593 dDocent_Contig_14485 98 . N G 774.634 . AB=0;ABP=0;AC=6;AF=1;AN=6;AO=25;CIGAR=1X;DP=25;DPB=25;DPRA=0;EPP=57.2971;EPPR=0;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=0;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=843;QR=0;RO=0;RPL=25;RPP=57.2971;RPPR=0;RPR=0;RUN=1;SAF=25;SAP=57.2971;SAR=0;SRF=0;SRP=0;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 1/1:9:0,9:0:0:9:297:-27.0518,-2.70927,0 1/1:4:0,4:0:0:4:139:-12.8527,-1.20412,0 1/1:12:0,12:0:0:12:407:-36.9568,-3.61236,0 dDocent_Contig_14486 1 . N G 74.0438 . AB=0;ABP=0;AC=2;AF=1;AN=2;AO=2;CIGAR=1X;DP=2;DPB=2;DPRA=0;EPP=7.35324;EPPR=0;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=0;NS=1;NUMALT=1;ODDS=5.99146;PAIRED=1;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=78;QR=0;RO=0;RPL=0;RPP=7.35324;RPPR=0;RPR=2;RUN=1;SAF=2;SAP=7.35324;SAR=0;SRF=0;SRP=0;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL ./.:.:.:.:.:.:.:. 1/1:2:0,2:0:0:2:78:-7.4033,-0.60206,0 ./.:.:.:.:.:.:.:. dDocent_Contig_14489 57 . G C 302.243 . AB=0.333333;ABP=12.42;AC=3;AF=0.5;AN=6;AO=13;CIGAR=1X;DP=39;DPB=39;DPRA=0;EPP=31.2394;EPPR=59.4686;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=515;QR=987;RO=26;RPL=13;RPP=31.2394;RPPR=59.4686;RPR=0;RUN=1;SAF=13;SAP=31.2394;SAR=0;SRF=26;SRP=59.4686;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:17:14,3:14:537:3:118:-5.88469,0,-43.5499 0/1:13:7,6:7:269:6:236:-17.6963,0,-20.6589 0/1:9:5,4:5:181:4:161:-12.1662,0,-13.9282 dDocent_Contig_14490 39 . T A 580.939 . AB=0.272727;ABP=42.4916;AC=3;AF=0.5;AN=6;AO=24;CIGAR=1X1M1X3M;DP=88;DPB=88;DPRA=0;EPP=55.1256;EPPR=98.5551;GTI=0;LEN=1;MEANALT=3.33333;MQM=60;MQMR=60;NS=3;NUMALT=3;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=928;QR=1774;RO=44;RPL=0;RPP=55.1256;RPPR=98.5551;RPR=24;RUN=1;SAF=24;SAP=55.1256;SAR=0;SRF=44;SRP=98.5551;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|1:32:15,1,8,8:15:605:1,8,8:40,318,311:-21.6703,-22.8903,-72.4647,0,-46.5837,-47.4706,-0.634794,-47.2138,-24.3284,-48.1006 0|1:29:15,1,3,9:15:607:1,3,9:38,120,338:-23.1522,-24.5513,-74.3112,-17.7776,-64.7263,-66.9392,0,-46.9416,-40.172,-47.3477 0|1:27:14,3,3,7:14:562:3,3,7:118,120,279:-18.7619,-13.2714,-58.6783,-13.0904,-49.6962,-58.4984,0,-36.6068,-36.4266,-44.2046 dDocent_Contig_14491 30 . C T 466.828 . AB=0.111111;ABP=50.3001;AC=0;AF=0;AN=6;AO=4;CIGAR=1X1M1X;DP=47;DPB=47;DPRA=0;EPP=11.6962;EPPR=57.2971;GTI=0;LEN=1;MEANALT=2;MQM=60;MQMR=60;NS=3;NUMALT=2;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=156;QR=995;RO=25;RPL=0;RPP=11.6962;RPPR=57.2971;RPR=4;RUN=1;SAF=4;SAP=11.6962;SAR=0;SRF=25;SRP=57.2971;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|0:24:12,1,11:12:483:1,11:36,441:-32.7588,-33.4371,-72.9443,0,-36.9122,-36.535 0|0:12:4,3,5:4:157:3,5:120,203:-15.542,-6.8633,-18.8663,0,-3.01957,-11.4027 0|0:11:9,0,2:9:355:0,2:0,76:-3.90293,-6.6122,-35.829,0,-29.5991,-28.9971 dDocent_Contig_14494 18 . C T 48.4907 . AB=0.2;ABP=14.7363;AC=1;AF=0.166667;AN=6;AO=4;CIGAR=1X;DP=33;DPB=33;DPRA=5;EPP=11.6962;EPPR=42.621;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=57.1379;NS=3;NUMALT=1;ODDS=1.73472e-18;PAIRED=1;PAIREDR=0.862069;PAO=0;PQA=0;PQR=0;PRO=0;QA=161;QR=1138;RO=29;RPL=0;RPP=11.6962;RPPR=65.983;RPR=4;RUN=1;SAF=4;SAP=11.6962;SAR=0;SRF=26;SRP=42.621;SRR=3;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:15:14,1:14:547:1:41:0,-0.420883,-44.5358 0/0:3:3,0:3:123:0:0:0,-0.90309,-11.4648 0/1:15:12,3:12:468:3:120:-6.67224,0,-37.8647 dDocent_Contig_14495 111 . A T 108.64 . AB=0.25;ABP=20.3821;AC=3;AF=0.5;AN=6;AO=8;CIGAR=1X;DP=32;DPB=32;DPRA=0;EPP=20.3821;EPPR=55.1256;GTI=0;LEN=1;MEANALT=1;MQM=44.125;MQMR=60;NS=3;NUMALT=1;ODDS=1.73472e-18;PAIRED=0;PAIREDR=0.791667;PAO=0;PQA=0;PQR=0;PRO=0;QA=286;QR=855;RO=24;RPL=0;RPP=20.3821;RPPR=55.1256;RPR=8;RUN=1;SAF=0;SAP=20.3821;SAR=8;SRF=0;SRP=55.1256;SRR=24;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:15:13,2:13:465:2:71:-2.22661,0,-37.6728 0/1:11:10,1:10:356:1:36:-0.286945,0,-29.0703 0/1:6:1,5:1:34:5:179:-11.6276,0,-1.59273 dDocent_Contig_14496 21 . T C 485.747 . AB=0.4;ABP=3.87889;AC=3;AF=0.5;AN=6;AO=15;CIGAR=1X;DP=26;DPB=26;DPRA=2.1;EPP=35.5824;EPPR=26.8965;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=8.67362e-19;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=582;QR=430;RO=11;RPL=0;RPP=35.5824;RPPR=26.8965;RPR=15;RUN=1;SAF=15;SAP=35.5824;SAR=0;SRF=11;SRP=26.8965;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:5:5,0:5:202:0:0:0,-1.50515,-18.5621 0/1:10:6,4:6:228:4:155:-11.3148,0,-17.8702 1/1:11:0,11:0:0:11:427:-38.7827,-3.31133,0 dDocent_Contig_14499 14 . G A 709.281 . AB=0.325581;ABP=25.735;AC=3;AF=0.5;AN=6;AO=28;CIGAR=1X;DP=86;DPB=86;DPRA=0;EPP=63.8115;EPPR=128.956;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=59.3793;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=1125;QR=2310;RO=58;RPL=0;RPP=63.8115;RPPR=128.956;RPR=28;RUN=1;SAF=28;SAP=63.8115;SAR=0;SRF=58;SRP=128.956;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:45:29,16:29:1149:16:637:-44.1157,0,-90.1349 0/1:16:8,8:8:324:8:325:-24.8026,0,-24.5914 0/1:25:21,4:21:837:4:163:-7.53268,0,-68.0818 dDocent_Contig_14500 114 . C T 32.069 . AB=0.333333;ABP=4.45795;AC=1;AF=0.166667;AN=6;AO=5;CIGAR=1X;DP=103;DPB=103;DPRA=1.56;EPP=13.8677;EPPR=215.815;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=1.73472e-18;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=180;QR=3389;RO=98;RPL=0;RPP=13.8677;RPPR=215.815;RPR=5;RUN=1;SAF=0;SAP=13.8677;SAR=5;SRF=0;SRP=215.815;SRR=98;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:72:69,3:69:2387:3:108:0,-11.599,-205.01 0/1:6:4,2:4:144:2:72:-5.03054,0,-11.5074 0/0:25:25,0:25:858:0:0:0,-7.52575,-77.5307 dDocent_Contig_14501 53 . C T 97.9059 . AB=0.0857143;ABP=55.1877;AC=0;AF=0;AN=6;AO=3;CIGAR=1X1M1X;DP=68;DPB=68;DPRA=0;EPP=9.52472;EPPR=124.613;GTI=0;LEN=1;MEANALT=2;MQM=60;MQMR=60;NS=3;NUMALT=2;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=115;QR=2212;RO=56;RPL=3;RPP=9.52472;RPPR=124.613;RPR=0;RUN=1;SAF=3;SAP=9.52472;SAR=0;SRF=56;SRP=124.613;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|0:35:29,3,3:29:1157:3,3:115,117:-0.890643,-0.186695,-94.578,0,-85.8648,-94.3974 0|0:10:6,0,4:6:230:0,4:0,158:-11.5884,-13.3945,-32.2606,0,-19.256,-18.0519 0|0:23:21,0,2:21:825:0,2:0,81:-0.762044,-7.08367,-74.9254,0,-68.2452,-67.6431 dDocent_Contig_14502 92 . T A 174.513 . AB=0.421053;ABP=4.03889;AC=1;AF=0.166667;AN=6;AO=8;CIGAR=1X2M1X;DP=35;DPB=35;DPRA=2.375;EPP=20.3821;EPPR=59.4686;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=1.73472e-18;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=274;QR=905;RO=26;RPL=8;RPP=20.3821;RPPR=59.4686;RPR=0;RUN=1;SAF=8;SAP=20.3821;SAR=0;SRF=26;SRP=59.4686;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|0:15:14,0:14:490:0:0:0,-4.21442,-44.2861 0|0:1:1,0:1:36:0:0:0,-0.30103,-3.59827 0|1:19:11,8:11:379:8:274:-19.2745,0,-28.7225 dDocent_Contig_14504 61 . A G 91.4507 . AB=0.285714;ABP=8.59409;AC=1;AF=0.25;AN=4;AO=4;CIGAR=1X;DP=20;DPB=20;DPRA=2.33333;EPP=11.6962;EPPR=37.7539;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=2;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=163;QR=636;RO=16;RPL=4;RPP=11.6962;RPPR=37.7539;RPR=0;RUN=1;SAF=4;SAP=11.6962;SAR=0;SRF=16;SRP=37.7539;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:14:10,4:10:407:4:163:-10.844,0,-32.7762 ./.:.:.:.:.:.:.:. 0/0:6:6,0:6:229:0:0:0,-1.80618,-20.9755 dDocent_Contig_14505 47 . T A 2514.81 . AB=0.757009;ABP=64.4001;AC=3;AF=0.5;AN=6;AO=81;CIGAR=1X;DP=107;DPB=107;DPRA=0;EPP=178.9;EPPR=59.4686;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=3204;QR=1038;RO=26;RPL=0;RPP=178.9;RPPR=59.4686;RPR=81;RUN=1;SAF=81;SAP=178.9;SAR=0;SRF=26;SRP=59.4686;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:72:16,56:16:642:56:2213:-177.664,0,-36.4374 0/1:8:4,4:4:154:4:155:-11.9144,0,-11.8229 0/1:27:6,21:6:242:21:836:-67.4255,0,-14.0286 dDocent_Contig_14506 26 . C A 1967.61 . AB=0.0833333;ABP=39.2015;AC=0;AF=0;AN=6;AO=2;CIGAR=1X1M1X3M1X4M1X;DP=94;DPB=94;DPRA=0;EPP=7.35324;EPPR=50.7827;GTI=0;LEN=1;MEANALT=3;MQM=36;MQMR=60;NS=3;NUMALT=3;ODDS=0;PAIRED=0;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=65;QR=859;RO=22;RPL=0;RPP=7.35324;RPPR=50.7827;RPR=2;RUN=1;SAF=2;SAP=7.35324;SAR=0;SRF=22;SRP=50.7827;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|0:59:15,1,0,42:15:581:1,0,42:39,0,1635:-129.84,-131.576,-179.003,-134.355,-179.304,-182.084,0,-44.961,-47.7385,-35.0952 0|0:11:2,0,0,8:2:79:0,0,8:0,0,312:-25.0949,-25.697,-32.2,-25.697,-32.2,-32.2,0,-6.5441,-6.5441,-4.13586 0|0:24:5,2,2,15:5:199:2,2,15:79,65,593:-47.3486,-43.2698,-59.0569,-43.9565,-54.7611,-59.7426,0,-10.8444,-11.5375,-11.9111 dDocent_Contig_14507 64 . T C 47.7719 . AB=0.2;ABP=14.7363;AC=1;AF=0.166667;AN=6;AO=3;CIGAR=1X;DP=34;DPB=34;DPRA=1.57895;EPP=9.52472;EPPR=70.3259;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=8.67362e-19;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=116;QR=1199;RO=31;RPL=3;RPP=9.52472;RPPR=70.3259;RPR=0;RUN=1;SAF=3;SAP=9.52472;SAR=0;SRF=31;SRP=70.3259;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:15:12,3:12:470:3:116:-6.30006,0,-38.1331 0/0:11:11,0:11:421:0:0:0,-3.31133,-38.2367 0/0:8:8,0:8:308:0:0:0,-2.40824,-28.0788 dDocent_Contig_14508 41 . T C 132.563 . AB=0.181818;ABP=12.6832;AC=3;AF=0.5;AN=6;AO=2;CIGAR=1X1M;DP=24;DPB=24;DPRA=0;EPP=7.35324;EPPR=39.9253;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=2;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=81;QR=579;RO=17;RPL=0;RPP=7.35324;RPPR=39.9253;RPR=2;RUN=1;SAF=2;SAP=7.35324;SAR=0;SRF=17;SRP=39.9253;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|1:9:6,3,0:6:212:3,0:114,0:-7.92254,0,-16.7145,-9.72872,-17.6176,-26.9755 0|1:11:9,0,2:9:295:0,2:0,81:-4.3744,-7.08367,-30.8524,0,-24.1592,-23.5572 0|1:4:2,2,0:2:72:2,0:81,0:-6.48161,0,-5.63252,-7.08367,-6.23458,-12.9361 dDocent_Contig_14509 57 . G A 201.976 . AB=0.538462;ABP=3.17734;AC=1;AF=0.166667;AN=6;AO=10;CIGAR=1X;DP=70;DPB=70;DPRA=0;EPP=24.725;EPPR=133.299;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=404;QR=2356;RO=60;RPL=10;RPP=24.725;RPPR=133.299;RPR=0;RUN=1;SAF=10;SAP=24.725;SAR=0;SRF=60;SRP=133.299;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:43:41,2:41:1610:2:80:0,-5.3525,-137.545 0/0:14:13,1:13:500:1:40:0,-0.218741,-41.3436 0/1:13:6,7:6:246:7:284:-22.0206,0,-18.6067 dDocent_Contig_14510 71 . T A 600.221 . AB=0.491228;ABP=3.0484;AC=3;AF=0.5;AN=6;AO=28;CIGAR=1X2M2X;DP=57;DPB=57;DPRA=0;EPP=63.8115;EPPR=63.8115;GTI=0;LEN=1;MEANALT=1.33333;MQM=43.1429;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=0;PAIREDR=0.821429;PAO=0;PQA=0;PQR=0;PRO=0;QA=921;QR=987;RO=28;RPL=0;RPP=63.8115;RPPR=4.25114;RPR=28;RUN=1;SAF=0;SAP=63.8115;SAR=28;SRF=16;SRP=4.25114;SRR=12;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|1:33:16,16:16:573:16:521:-36.5987,0,-41.9249 0|1:14:10,4:10:345:4:135:-8.17757,0,-27.1689 0|1:10:2,8:2:69:8:265:-20.7646,0,-3.54236 dDocent_Contig_14511 171 . G T 279.273 . AB=0.55;ABP=3.44459;AC=2;AF=0.333333;AN=6;AO=11;CIGAR=1X;DP=38;DPB=38;DPRA=0.555556;EPP=26.8965;EPPR=59.4686;GTI=0;LEN=1;MEANALT=1.5;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=407;QR=996;RO=26;RPL=11;RPP=26.8965;RPPR=59.4686;RPR=0;RUN=1;SAF=0;SAP=26.8965;SAR=11;SRF=0;SRP=59.4686;SRR=26;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:18:18,0:18:690:0:0:0,-5.41854,-62.4307 0/1:12:2,9:2:72:9:333:-26.8255,0,-3.29844 0/1:8:6,2:6:234:2:74:-4.61719,0,-19.0225 dDocent_Contig_14512 101 . N C 36.7829 . AB=0;ABP=0;AC=2;AF=1;AN=2;AO=5;CIGAR=7X3M1I1M1X3M1X1M1X;DP=5;DPB=5.27778;DPRA=0;EPP=13.8677;EPPR=0;GTI=0;LEN=1;MEANALT=1;MQM=8;MQMR=0;NS=1;NUMALT=1;ODDS=8.07091;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=187;QR=0;RO=0;RPL=0;RPP=13.8677;RPPR=0;RPR=5;RUN=1;SAF=5;SAP=13.8677;SAR=0;SRF=0;SRP=0;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 1|1:5:0,5:0:0:5:187:-3.67806,-1.50515,0 .:.:.:.:.:.:.:. .:.:.:.:.:.:.:. dDocent_Contig_14513 17 . A G 244.787 . AB=0.13245;ABP=180.194;AC=1;AF=0.166667;AN=6;AO=46;CIGAR=1X;DP=502;DPB=502;DPRA=0;EPP=102.898;EPPR=991.03;GTI=0;LEN=1;MEANALT=1.33333;MQM=59.6739;MQMR=59.3275;NS=3;NUMALT=1;ODDS=0;PAIRED=0.0217391;PAIREDR=0.463736;PAO=0;PQA=0;PQR=0;PRO=0;QA=1786;QR=18193;RO=455;RPL=0;RPP=102.898;RPPR=991.03;RPR=46;RUN=1;SAF=46;SAP=102.898;SAR=0;SRF=455;SRP=991.03;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:260:242,18:242:9672:18:706:0,-14.4031,-803.988 0/0:91:83,8:83:3323:8:285:0,-1.41612,-272.98 0/1:151:130,20:130:5198:20:795:-26.3025,0,-421.61 dDocent_Contig_14514 23 . C T 105.305 . AB=0.138462;ABP=76.807;AC=2;AF=0.333333;AN=6;AO=9;CIGAR=1X;DP=81;DPB=81;DPRA=2.03125;EPP=22.5536;EPPR=159.356;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=365;QR=2896;RO=72;RPL=0;RPP=22.5536;RPPR=159.356;RPR=9;RUN=1;SAF=9;SAP=22.5536;SAR=0;SRF=72;SRP=159.356;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:31:27,4:27:1095:4:163:-5.7265,0,-89.5014 0/0:16:16,0:16:646:0:0:0,-4.81648,-58.4725 0/1:34:29,5:29:1155:5:202:-8.32685,0,-93.9948 dDocent_Contig_14515 15 . A T 717.948 . AB=0.446809;ABP=4.16534;AC=4;AF=0.666667;AN=6;AO=24;CIGAR=1X4M;DP=50;DPB=50;DPRA=0;EPP=55.1256;EPPR=52.9542;GTI=0;LEN=1;MEANALT=1.33333;MQM=60;MQMR=60;NS=3;NUMALT=2;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=976;QR=906;RO=23;RPL=0;RPP=55.1256;RPPR=52.9542;RPR=24;RUN=1;SAF=24;SAP=55.1256;SAR=0;SRF=23;SRP=52.9542;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|1:33:17,0,16:17:680:0,16:0,651:-48.9889,-54.1065,-110.118,0,-56.4147,-51.5982 1|1:3:0,0,3:0:0:0,3:0,123:-11.4648,-11.4648,-11.4648,-0.90309,-0.90309,0 0|1:14:6,3,5:6:226:3,5:113,202:-14.8636,-7.42003,-25.0187,0,-9.25657,-17.0113 dDocent_Contig_14516 7 . A T 4615.94 . AB=0.593284;ABP=23.2666;AC=3;AF=0.5;AN=6;AO=159;CIGAR=1X;DP=268;DPB=268;DPRA=0;EPP=348.274;EPPR=237.529;GTI=0;LEN=1;MEANALT=1.33333;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=1.38778e-17;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=6079;QR=4132;RO=108;RPL=0;RPP=348.274;RPPR=237.529;RPR=159;RUN=1;SAF=159;SAP=348.274;SAR=0;SRF=108;SRP=237.529;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:166:72,93:72:2756:93:3568:-271.25,0,-198.233 0/1:14:4,10:4:154:10:387:-30.9731,0,-10.019 0/1:88:32,56:32:1222:56:2124:-164.894,0,-83.7851 dDocent_Contig_14519 9 . T A 825.403 . AB=0.363636;ABP=4.78696;AC=0;AF=0;AN=6;AO=4;CIGAR=1X1M1X3M1X;DP=51;DPB=51;DPRA=0;EPP=11.6962;EPPR=37.7539;GTI=0;LEN=1;MEANALT=2;MQM=13;MQMR=60;NS=3;NUMALT=3;ODDS=0;PAIRED=0;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=156;QR=640;RO=16;RPL=0;RPP=11.6962;RPPR=37.7539;RPR=4;RUN=1;SAF=4;SAP=11.6962;SAR=0;SRF=16;SRP=37.7539;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|0:26:7,0,2,16:7:280:0,2,16:0,58,644:-50.8982,-53.0054,-76.0746,-48.9436,-72.0088,-71.4068,0,-23.131,-19.0823,-18.3145 0|0:11:2,4,0,5:2:80:4,0,5:156,0,197:-15.413,-12.6569,-18.0468,-16.0151,-19.2509,-22.6284,0,-3.38778,-6.68005,-5.1749 0|0:14:7,0,0,7:7:280:0,0,7:0,0,285:-21.7518,-23.859,-46.9215,-23.859,-46.9215,-46.9215,0,-23.4651,-23.4651,-21.3579 dDocent_Contig_14520 10 . T C 65.0232 . AB=0.121212;ABP=85.263;AC=1;AF=0.166667;AN=6;AO=10;CIGAR=1X;DP=151;DPB=151;DPRA=3.94118;EPP=24.725;EPPR=309.188;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=388;QR=5694;RO=141;RPL=0;RPP=24.725;RPPR=309.188;RPR=10;RUN=1;SAF=10;SAP=24.725;SAR=0;SRF=141;SRP=309.188;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:66:58,8:58:2335:8:306:-8.0252,0,-190.432 0/0:17:17,0:17:695:0:0:0,-5.11751,-62.8772 0/0:68:66,2:66:2664:2:82:0,-12.6904,-232.096 dDocent_Contig_14521 17 . T G 468.752 . AB=0.0731707;ABP=132.769;AC=1;AF=0.166667;AN=6;AO=6;CIGAR=2M1X8M;DP=82;DPB=99.5455;DPRA=0;EPP=16.0391;EPPR=118.098;GTI=0;LEN=1;MEANALT=2.33333;MQM=60;MQMR=60;NS=3;NUMALT=2;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=240;QR=2080;RO=53;RPL=0;RPP=16.0391;RPPR=118.098;RPR=6;RUN=1;SAF=6;SAP=16.0391;SAR=0;SRF=53;SRP=118.098;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|0:50:29,17,2:29:1145:17,2:632,79:-42.9639,0,-89.0947,-45.1908,-87.7112,-138.814 0|0:8:3,3,2:3:117:3,2:103,79:-7.42771,0,-8.71112,-1.80962,-3.11163,-10.848 0|1:24:21,1,2:21:818:1,2:39,82:-0.459731,-3.58208,-70.4876,0,-64.0187,-66.6225 dDocent_Contig_14522 123 . G A 45.6598 . AB=0.184211;ABP=35.9253;AC=2;AF=0.5;AN=4;AO=7;CIGAR=1X;DP=38;DPB=38;DPRA=0;EPP=5.80219;EPPR=70.3259;GTI=0;LEN=1;MEANALT=1;MQM=35.5714;MQMR=60;NS=2;NUMALT=1;ODDS=0;PAIRED=0.285714;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=256;QR=1096;RO=31;RPL=0;RPP=18.2106;RPPR=70.3259;RPR=7;RUN=1;SAF=5;SAP=5.80219;SAR=2;SRF=0;SRP=70.3259;SRR=31;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:18:13,5:13:464:5:185:-6.25366,0,-36.6792 ./.:.:.:.:.:.:.:. 0/1:20:18,2:18:632:2:71:-0.721459,0,-51.1866 dDocent_Contig_14524 195 . T A 72.8966 . AB=0.235294;ABP=13.3567;AC=1;AF=0.166667;AN=6;AO=4;CIGAR=1X;DP=24;DPB=24;DPRA=4.85714;EPP=11.6962;EPPR=46.4397;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=1.73472e-18;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=154;QR=788;RO=20;RPL=4;RPP=11.6962;RPPR=46.4397;RPR=0;RUN=1;SAF=0;SAP=11.6962;SAR=4;SRF=0;SRP=46.4397;SRR=20;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:6:6,0:6:241:0:0:0,-1.80618,-22.0663 0/0:1:1,0:1:41:0:0:0,-0.30103,-4.09457 0/1:17:13,4:13:506:4:154:-9.11281,0,-40.7607 dDocent_Contig_14525 52 . A G 207.313 . AB=0.2;ABP=46.0055;AC=2;AF=0.333333;AN=6;AO=12;CIGAR=1X;DP=69;DPB=69;DPRA=0;EPP=29.068;EPPR=126.784;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=3.46945e-18;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=486;QR=2292;RO=57;RPL=12;RPP=29.068;RPPR=126.784;RPR=0;RUN=1;SAF=12;SAP=29.068;SAR=0;SRF=57;SRP=126.784;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:47:38,9:38:1528:9:364:-18.9755,0,-123.608 0/1:8:6,2:6:238:2:81:-5.27749,0,-19.385 0/0:14:13,1:13:526:1:41:0,-0.119853,-43.5922 dDocent_Contig_14527 12 . C T 31.1771 . AB=0.121212;ABP=44.1367;AC=1;AF=0.166667;AN=6;AO=5;CIGAR=1X;DP=75;DPB=75;DPRA=2.17857;EPP=13.8677;EPPR=155.013;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=202;QR=2822;RO=70;RPL=0;RPP=13.8677;RPPR=155.013;RPR=5;RUN=1;SAF=5;SAP=13.8677;SAR=0;SRF=70;SRP=155.013;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:28:27,1:27:1077:1:41:0,-4.33427,-93.125 0/1:33:29,4:29:1175:4:161:-4.94128,0,-96.0916 0/0:14:14,0:14:570:0:0:0,-4.21442,-51.642 dDocent_Contig_14528 74 . G C 42.6596 . AB=0.181818;ABP=22.3561;AC=2;AF=0.333333;AN=6;AO=4;CIGAR=1X;DP=23;DPB=23;DPRA=11;EPP=11.6962;EPPR=44.2683;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=151;QR=713;RO=19;RPL=4;RPP=11.6962;RPPR=44.2683;RPR=0;RUN=1;SAF=4;SAP=11.6962;SAR=0;SRF=19;SRP=44.2683;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:7:6,1:6:241:1:38:-1.69006,0,-19.9593 0/0:1:1,0:1:39:0:0:0,-0.30103,-3.89656 0/1:15:12,3:12:433:3:113:-6.02352,0,-34.7857 dDocent_Contig_14529 17 . G A 185.998 . AB=0.196078;ABP=43.9277;AC=2;AF=0.333333;AN=6;AO=14;CIGAR=1X;DP=120;DPB=120;DPRA=0;EPP=33.4109;EPPR=233.186;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=565;QR=4267;RO=106;RPL=0;RPP=33.4109;RPPR=233.186;RPR=14;RUN=1;SAF=14;SAP=33.4109;SAR=0;SRF=106;SRP=233.186;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:69:65,4:65:2611:4:161:0,-5.89617,-220.237 0/1:9:8,1:8:322:1:41:-1.3853,0,-26.6392 0/1:42:33,9:33:1334:9:363:-20.3899,0,-107.672 dDocent_Contig_14531 10 . T A 389.393 . AB=0.65;ABP=6.91895;AC=1;AF=0.166667;AN=6;AO=13;CIGAR=1X;DP=36;DPB=36;DPRA=2.5;EPP=31.2394;EPPR=52.9542;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=516;QR=924;RO=23;RPL=0;RPP=31.2394;RPPR=52.9542;RPR=13;RUN=1;SAF=13;SAP=31.2394;SAR=0;SRF=23;SRP=52.9542;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:12:12,0:12:479:0:0:0,-3.61236,-43.4586 0/0:4:4,0:4:164:0:0:0,-1.20412,-15.1499 0/1:20:7,13:7:281:13:516:-40.7631,0,-19.6411 dDocent_Contig_14534 52 . C A 869.292 . AB=0.465517;ABP=3.60933;AC=2;AF=0.333333;AN=6;AO=27;CIGAR=3M1X2M;DP=65;DPB=57;DPRA=0;EPP=61.6401;EPPR=59.4686;GTI=0;LEN=1;MEANALT=2;MQM=60;MQMR=60;NS=3;NUMALT=2;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=1070;QR=1041;RO=26;RPL=27;RPP=61.6401;RPPR=59.4686;RPR=0;RUN=1;SAF=27;SAP=61.6401;SAR=0;SRF=26;SRP=59.4686;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|1:44:17,6,21:17:681:6,21:230,831:-63.2802,-49.5257,-103.825,0,-37.246,-49.7946 0|0:7:3,4,0:3:120:4,0:144,0:-11.2022,0,-9.08069,-12.1053,-10.2848,-22.0077 0|1:14:6,2,6:6:240:2,6:54,239:-17.9696,-15.5511,-34.7204,0,-15.6434,-18.0615 dDocent_Contig_14535 13 . A G 364.994 . AB=0.253968;ABP=36.1339;AC=2;AF=0.5;AN=4;AO=16;CIGAR=1X;DP=63;DPB=63;DPRA=0;EPP=37.7539;EPPR=105.07;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=2;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=649;QR=1891;RO=47;RPL=0;RPP=37.7539;RPPR=105.07;RPR=16;RUN=1;SAF=16;SAP=37.7539;SAR=0;SRF=47;SRP=105.07;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:48:34,14:34:1364:14:567:-36.9225,0,-108.568 ./.:.:.:.:.:.:.:. 0/1:15:13,2:13:527:2:82:-3.26423,0,-43.2613 dDocent_Contig_14537 18 . G A 96.8105 . AB=0.175;ABP=39.7082;AC=2;AF=0.333333;AN=6;AO=7;CIGAR=1X;DP=49;DPB=49;DPRA=2.22222;EPP=18.2106;EPPR=85.7331;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=0.952381;PAO=0;PQA=0;PQR=0;PRO=0;QA=272;QR=1661;RO=42;RPL=0;RPP=18.2106;RPPR=94.2121;RPR=7;RUN=1;SAF=7;SAP=18.2106;SAR=0;SRF=41;SRP=85.7331;SRR=1;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:30:25,5:25:970:5:190:-8.43431,0,-78.5616 0/0:9:9,0:9:365:0:0:0,-2.70927,-33.2151 0/1:10:8,2:8:326:2:82:-4.76938,0,-26.6996 dDocent_Contig_14538 121 . T C 79.0694 . AB=0.214286;ABP=22.8638;AC=2;AF=0.333333;AN=6;AO=7;CIGAR=1X1M1X3M1X;DP=59;DPB=59;DPRA=0;EPP=18.2106;EPPR=115.927;GTI=0;LEN=1;MEANALT=1;MQM=38;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=0;PAIREDR=0.980769;PAO=0;PQA=0;PQR=0;PRO=0;QA=273;QR=1852;RO=52;RPL=0;RPP=18.2106;RPPR=115.927;RPR=7;RUN=1;SAF=7;SAP=18.2106;SAR=0;SRF=0;SRP=115.927;SRR=52;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|0:31:30,1:30:1070:1:39:0,-5.7858,-93.0665 0|1:7:5,2:5:178:2:78:-4.63043,0,-14.2615 0|1:21:17,4:17:604:4:156:-6.79905,0,-48.3696 dDocent_Contig_14539 60 . G T 313.846 . AB=0.309524;ABP=16.2459;AC=2;AF=0.333333;AN=6;AO=13;CIGAR=1X;DP=62;DPB=62;DPRA=1.05;EPP=31.2394;EPPR=109.412;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=512;QR=1851;RO=49;RPL=13;RPP=31.2394;RPPR=109.412;RPR=0;RUN=1;SAF=13;SAP=31.2394;SAR=0;SRF=49;SRP=109.412;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:20:20,0:20:739:0:0:0,-6.0206,-66.8212 0/1:10:9,1:9:339:1:40:-0.985379,0,-27.8518 0/1:32:20,12:20:773:12:472:-33.1947,0,-60.2559 dDocent_Contig_14540 125 . T A 272.222 . AB=0.342105;ABP=11.239;AC=2;AF=0.333333;AN=6;AO=13;CIGAR=1X;DP=42;DPB=42;DPRA=4.75;EPP=31.2394;EPPR=65.983;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=461;QR=1018;RO=29;RPL=0;RPP=31.2394;RPPR=65.983;RPR=13;RUN=1;SAF=0;SAP=31.2394;SAR=13;SRF=0;SRP=65.983;SRR=29;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:27:17,10:17:589:10:353:-23.9811,0,-45.2059 0/0:4:4,0:4:143:0:0:0,-1.20412,-13.2214 0/1:11:8,3:8:286:3:108:-6.76384,0,-22.7742 dDocent_Contig_14541 23 . A T 234.364 . AB=0.0852273;ABP=266.005;AC=1;AF=0.166667;AN=6;AO=15;CIGAR=1X2M2X;DP=176;DPB=176;DPRA=0;EPP=35.5824;EPPR=315.702;GTI=0;LEN=1;MEANALT=2;MQM=59.9333;MQMR=60;NS=3;NUMALT=2;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=604;QR=5681;RO=144;RPL=0;RPP=35.5824;RPPR=315.702;RPR=15;RUN=1;SAF=15;SAP=35.5824;SAR=0;SRF=144;SRP=315.702;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|1:97:82,10,5:82:3232:10,5:401,191:-8.36634,0,-262.898,-17.392,-250.244,-281.778 0|0:14:10,1,3:10:398:1,3:40,116:-6.50737,-6.21928,-38.6987,0,-29.4747,-31.8668 0|0:65:52,4,9:52:2051:4,9:163,361:-14.0855,-16.2898,-183.827,0,-155.287,-166.026 dDocent_Contig_14542 40 . C G 129.139 . AB=0.210526;ABP=30.668;AC=2;AF=0.333333;AN=6;AO=11;CIGAR=2X;DP=84;DPB=84;DPRA=0;EPP=26.8965;EPPR=155.013;GTI=0;LEN=1;MEANALT=1.66667;MQM=41.9091;MQMR=60;NS=3;NUMALT=2;ODDS=0;PAIRED=0;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=421;QR=2807;RO=70;RPL=0;RPP=26.8965;RPPR=155.013;RPR=11;RUN=1;SAF=11;SAP=26.8965;SAR=0;SRF=70;SRP=155.013;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|0:46:42,3,1:42:1687:3,1:116,40:0,-6.43804,-144.542,-9.31502,-142.151,-148.145 0|1:12:5,5,2:5:200:5,2:201,82:-14.7348,0,-14.9626,-9.46755,-9.69677,-25.3428 0|1:26:23,3,0:23:920:3,0:104,0:-0.317945,0,-75.2777,-7.24164,-76.1808,-83.119 dDocent_Contig_14543 150 . A G 578.629 . AB=0.4;ABP=7.78754;AC=3;AF=0.5;AN=6;AO=22;CIGAR=1X;DP=55;DPB=55;DPRA=0;EPP=50.7827;EPPR=74.6689;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=876;QR=1306;RO=33;RPL=0;RPP=50.7827;RPPR=74.6689;RPR=22;RUN=1;SAF=0;SAP=50.7827;SAR=22;SRF=0;SRP=74.6689;SRR=33;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:34:21,13:21:838:13:516:-36.5459,0,-65.4948 0/1:7:4,3:4:160:3:119:-8.98797,0,-12.6762 0/1:14:8,6:8:308:6:241:-17.8519,0,-23.8619 dDocent_Contig_14544 75 . G A 139.504 . AB=0.25;ABP=18.2106;AC=4;AF=0.666667;AN=6;AO=8;CIGAR=1X;DP=29;DPB=29;DPRA=0;EPP=20.3821;EPPR=48.6112;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=272;QR=700;RO=21;RPL=8;RPP=20.3821;RPPR=48.6112;RPR=0;RUN=1;SAF=8;SAP=20.3821;SAR=0;SRF=21;SRP=48.6112;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:16:14,2:14:474:2:68:-1.6414,0,-38.1678 1/1:1:0,1:0:0:1:33:-3.29913,-0.30103,0 0/1:12:7,5:7:226:5:171:-12.1143,0,-17.0439 dDocent_Contig_14545 12 . T A 180.284 . AB=0.35;ABP=6.91895;AC=1;AF=0.166667;AN=6;AO=7;CIGAR=1X;DP=30;DPB=30;DPRA=4;EPP=18.2106;EPPR=52.9542;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=280;QR=909;RO=23;RPL=0;RPP=18.2106;RPPR=52.9542;RPR=7;RUN=1;SAF=7;SAP=18.2106;SAR=0;SRF=23;SRP=52.9542;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:20:13,7:13:515:7:280:-19.551,0,-40.6777 0/0:2:2,0:2:81:0:0:0,-0.60206,-7.68573 0/0:8:8,0:8:313:0:0:0,-2.40824,-28.5314 dDocent_Contig_14547 15 . G A 127.649 . AB=0.190476;ABP=37.9607;AC=2;AF=0.333333;AN=6;AO=11;CIGAR=1X;DP=93;DPB=93;DPRA=0;EPP=26.8965;EPPR=181.071;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=433;QR=3099;RO=82;RPL=0;RPP=26.8965;RPPR=181.071;RPR=11;RUN=1;SAF=11;SAP=26.8965;SAR=0;SRF=82;SRP=181.071;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:51:48,3:48:1804:3:120:0,-4.16484,-151.434 0/1:8:6,2:6:231:2:80:-5.18333,0,-18.7498 0/1:34:28,6:28:1064:6:233:-11.1044,0,-85.8337 dDocent_Contig_14548 30 . G A 228.046 . AB=0.344828;ABP=9.07545;AC=3;AF=0.5;AN=6;AO=10;CIGAR=1X;DP=29;DPB=29;DPRA=0;EPP=24.725;EPPR=36.0395;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=57.0526;NS=3;NUMALT=1;ODDS=1.73472e-18;PAIRED=1;PAIREDR=0.894737;PAO=0;PQA=0;PQR=0;PRO=0;QA=381;QR=747;RO=19;RPL=0;RPP=24.725;RPPR=28.7251;RPR=10;RUN=1;SAF=10;SAP=24.725;SAR=0;SRF=18;SRP=36.0395;SRR=1;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:9:8,1:8:324:1:30:-0.290296,0,-24.7497 0/1:15:8,7:8:310:7:271:-20.238,0,-23.7442 0/1:5:3,2:3:113:2:80:-6.08664,0,-9.03087 dDocent_Contig_14549 40 . T G 1476.54 . AB=0.615385;ABP=12.0303;AC=2;AF=0.333333;AN=6;AO=48;CIGAR=1X;DP=79;DPB=79;DPRA=39;EPP=107.241;EPPR=70.3259;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=1934;QR=1253;RO=31;RPL=0;RPP=107.241;RPPR=70.3259;RPR=48;RUN=1;SAF=48;SAP=107.241;SAR=0;SRF=31;SRP=70.3259;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:57:22,35:22:890:35:1407:-109.721,0,-63.2469 0/0:1:1,0:1:37:0:0:0,-0.30103,-3.69783 0/1:21:8,13:8:326:13:527:-41.4551,0,-23.3882 dDocent_Contig_14550 41 . A G 66.6286 . AB=0.190476;ABP=20.4855;AC=1;AF=0.166667;AN=6;AO=4;CIGAR=1X;DP=38;DPB=38;DPRA=2.47059;EPP=11.6962;EPPR=76.8404;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=0;PAIREDR=0.764706;PAO=0;PQA=0;PQR=0;PRO=0;QA=157;QR=1364;RO=34;RPL=0;RPP=11.6962;RPPR=76.8404;RPR=4;RUN=1;SAF=4;SAP=11.6962;SAR=0;SRF=34;SRP=76.8404;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:21:17,4:17:680:4:157:-8.18555,0,-55.2097 0/0:3:3,0:3:123:0:0:0,-0.90309,-11.4648 0/0:14:14,0:14:561:0:0:0,-4.21442,-50.8313 dDocent_Contig_14551 26 . T A 2185.83 . AB=0.239295;ABP=237.382;AC=3;AF=0.5;AN=6;AO=95;CIGAR=1X;DP=397;DPB=397;DPRA=0;EPP=209.3;EPPR=658.795;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=3809;QR=11962;RO=302;RPL=0;RPP=209.3;RPPR=658.795;RPR=95;RUN=1;SAF=95;SAP=209.3;SAR=0;SRF=302;SRP=658.795;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:262:202,60:202:8007:60:2406:-137.821,0,-641.347 0/1:25:21,4:21:837:4:159:-7.16569,0,-68.1173 0/1:110:79,31:79:3118:31:1244:-79.1188,0,-247.597 dDocent_Contig_14552 76 . G A 232.921 . AB=0.357143;ABP=7.97367;AC=3;AF=0.5;AN=6;AO=10;CIGAR=1X;DP=28;DPB=28;DPRA=0;EPP=24.725;EPPR=42.0968;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=401;QR=707;RO=18;RPL=10;RPP=24.725;RPPR=42.0968;RPR=0;RUN=1;SAF=10;SAP=24.725;SAR=0;SRF=18;SRP=42.0968;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:14:8,6:8:327:6:243:-18.0338,0,-25.5857 0/1:4:2,2:2:77:2:80:-6.38745,0,-6.10408 0/1:10:8,2:8:303:2:78:-4.39317,0,-24.6161 dDocent_Contig_14553 17 . A G 3182.73 . AB=0.0299145;ABP=452.152;AC=0;AF=0;AN=6;AO=7;CIGAR=1X1M1X3M1X;DP=329;DPB=329;DPRA=0;EPP=18.2106;EPPR=428.619;GTI=0;LEN=1;MEANALT=3.5;MQM=60;MQMR=60;NS=3;NUMALT=3;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=280;QR=7732;RO=196;RPL=0;RPP=18.2106;RPPR=428.619;RPR=7;RUN=1;SAF=7;SAP=18.2106;SAR=0;SRF=196;SRP=428.619;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|0:201:123,5,1,71:123:4870:5,1,71:200,40,2795:-192.861,-213.412,-612.734,-226.592,-610.944,-627.118,0,-384.348,-397.528,-379.45 0|0:33:19,2,3,9:19:735:2,3,9:80,112,355:-23.4932,-22.621,-82.388,-20.0489,-73.823,-79.5108,0,-53.7812,-51.206,-57.6634 0|0:95:54,0,4,37:54:2127:0,4,37:0,161,1500:-107.443,-123.698,-298.674,-110.429,-285.404,-284.2,0,-174.974,-161.704,-163.836 dDocent_Contig_14554 14 . G T 3121.42 . AB=0.15873;ABP=194.203;AC=0;AF=0;AN=6;AO=30;CIGAR=2X;DP=189;DPB=189;DPRA=0;EPP=68.1545;EPPR=124.613;GTI=0;LEN=1;MEANALT=2;MQM=60;MQMR=60;NS=3;NUMALT=2;ODDS=2.77556e-17;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=1192;QR=2228;RO=56;RPL=0;RPP=68.1545;RPPR=124.613;RPR=30;RUN=1;SAF=30;SAP=68.1545;SAR=0;SRF=56;SRP=124.613;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|0:99:31,14,54:31:1246:14,54:555,2140:-166.803,-130.454,-228.921,0,-57.0035,-86.4271 0|0:37:8,3,26:8:324:3,26:121,1022:-81.6359,-74.0689,-99.885,0,-16.7438,-18.8909 0|0:53:17,13,23:17:658:13,23:516,904:-69.2261,-31.8658,-81.9916,0,-11.5555,-47.1125 dDocent_Contig_14555 17 . T A 39.2677 . AB=0.12;ABP=65.7224;AC=2;AF=0.333333;AN=6;AO=6;CIGAR=1X1M1X;DP=62;DPB=62;DPRA=2.08333;EPP=16.0391;EPPR=124.613;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=239;QR=2186;RO=56;RPL=0;RPP=16.0391;RPPR=124.613;RPR=6;RUN=1;SAF=6;SAP=16.0391;SAR=0;SRF=56;SRP=124.613;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|1:20:17,3:17:673:3:122:-5.35189,0,-54.8788 0|1:30:27,3:27:1036:3:117:-1.87901,0,-84.5084 0|0:12:12,0:12:477:0:0:0,-3.61236,-43.2802 dDocent_Contig_14556 13 . G T 103.166 . AB=0.2;ABP=34.2795;AC=3;AF=0.5;AN=6;AO=8;CIGAR=1X;DP=40;DPB=40;DPRA=0;EPP=20.3821;EPPR=72.4974;GTI=0;LEN=1;MEANALT=1;MQM=44;MQMR=58.2812;NS=3;NUMALT=1;ODDS=0;PAIRED=0;PAIREDR=0.96875;PAO=0;PQA=0;PQR=0;PRO=0;QA=308;QR=1278;RO=32;RPL=0;RPP=20.3821;RPPR=72.4974;RPR=8;RUN=1;SAF=8;SAP=20.3821;SAR=0;SRF=32;SRP=72.4974;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:20:17,3:17:672:3:107:-3.68642,0,-51.6241 0/1:10:7,3:7:283:3:119:-7.70506,0,-22.8331 0/1:10:8,2:8:323:2:82:-4.4445,0,-26.4289 dDocent_Contig_14557 19 . T A 481.974 . AB=0.339286;ABP=15.5738;AC=2;AF=0.333333;AN=6;AO=19;CIGAR=1X;DP=63;DPB=63;DPRA=4;EPP=44.2683;EPPR=98.5551;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=754;QR=1764;RO=44;RPL=0;RPP=44.2683;RPPR=98.5551;RPR=19;RUN=1;SAF=19;SAP=44.2683;SAR=0;SRF=44;SRP=98.5551;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:32:22,10:22:891:10:393:-26.0914,0,-70.8619 0/0:7:7,0:7:259:0:0:0,-2.10721,-23.6547 0/1:24:15,9:15:614:9:361:-25.629,0,-48.3717 dDocent_Contig_14558 36 . T A 184.631 . AB=0.285714;ABP=14.1779;AC=1;AF=0.166667;AN=6;AO=9;CIGAR=1X;DP=45;DPB=45;DPRA=22;EPP=22.5536;EPPR=81.1833;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=351;QR=1442;RO=36;RPL=0;RPP=22.5536;RPPR=81.1833;RPR=9;RUN=1;SAF=9;SAP=22.5536;SAR=0;SRF=36;SRP=81.1833;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:16:15,1:15:591:1:36:0,-1.2182,-49.9268 0/0:1:1,0:1:38:0:0:0,-0.30103,-3.79727 0/1:28:20,8:20:813:8:315:-20.2862,0,-65.0564 dDocent_Contig_14559 113 . A G 150.112 . AB=0.75;ABP=7.35324;AC=1;AF=0.166667;AN=6;AO=7;CIGAR=1X;DP=48;DPB=48;DPRA=3.5;EPP=18.2106;EPPR=92.0407;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=58.7317;NS=3;NUMALT=1;ODDS=0;PAIRED=0;PAIREDR=0.95122;PAO=0;PQA=0;PQR=0;PRO=0;QA=245;QR=1414;RO=41;RPL=0;RPP=18.2106;RPPR=92.0407;RPR=7;RUN=1;SAF=0;SAP=18.2106;SAR=7;SRF=0;SRP=92.0407;SRR=41;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:34:33,1:33:1134:1:35:0,-6.73639,-98.8689 0/1:8:2,6:2:70:6:210:-16.8342,0,-4.2353 0/0:6:6,0:6:210:0:0:0,-1.80618,-17.3157 dDocent_Contig_14560 12 . T G 37.4329 . AB=0.111111;ABP=97.59;AC=2;AF=0.333333;AN=6;AO=10;CIGAR=1X;DP=158;DPB=158;DPRA=0;EPP=24.725;EPPR=324.388;GTI=0;LEN=1;MEANALT=1;MQM=59.6;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=0.986486;PAO=0;PQA=0;PQR=0;PRO=0;QA=394;QR=5431;RO=148;RPL=0;RPP=24.725;RPPR=324.388;RPR=10;RUN=1;SAF=10;SAP=24.725;SAR=0;SRF=148;SRP=324.388;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:86:84,2:84:3126:2:81:0,-18.2028,-273.836 0/1:10:8,2:8:268:2:78:-4.393,0,-21.4325 0/1:62:56,6:56:2037:6:235:-2.85267,0,-164.907 dDocent_Contig_14561 28 . T A 1359.32 . AB=0.417391;ABP=9.82684;AC=3;AF=0.5;AN=6;AO=48;CIGAR=1X5M;DP=115;DPB=113.333;DPRA=0;EPP=107.241;EPPR=126.784;GTI=0;LEN=1;MEANALT=1.33333;MQM=60;MQMR=60;NS=3;NUMALT=2;ODDS=0;PAIRED=0.958333;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=1916;QR=2209;RO=57;RPL=0;RPP=107.241;RPPR=126.784;RPR=48;RUN=1;SAF=48;SAP=107.241;SAR=0;SRF=57;SRP=126.784;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|1:74:31,10,33:31:1191:10,33:395,1328:-100.12,-76.9497,-171.696,0,-65.2507,-87.8232 0|1:4:3,0,1:3:117:0,1:0,40:-2.79156,-3.69465,-13.3044,0,-10.0068,-9.70579 0|1:37:23,0,14:23:901:0,14:0,548:-38.5201,-45.4438,-119.529,0,-74.4767,-70.2623 dDocent_Contig_14562 144 . A T 68.4028 . AB=0.333333;ABP=5.9056;AC=1;AF=0.166667;AN=6;AO=5;CIGAR=1X;DP=34;DPB=34;DPRA=0.5;EPP=13.8677;EPPR=65.983;GTI=0;LEN=1;MEANALT=1;MQM=34.2;MQMR=54.0345;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=173;QR=1003;RO=29;RPL=0;RPP=13.8677;RPPR=65.983;RPR=5;RUN=1;SAF=0;SAP=13.8677;SAR=5;SRF=0;SRP=65.983;SRR=29;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:17:17,0:17:587:0:0:0,-5.11751,-49.6086 0/0:5:4,1:4:136:1:35:0,-0.00933531,-10.7144 0/1:12:8,4:8:280:4:138:-8.66278,0,-21.9276 dDocent_Contig_14563 32 . C G 189.31 . AB=0.4375;ABP=3.55317;AC=1;AF=0.166667;AN=6;AO=7;CIGAR=1X;DP=35;DPB=35;DPRA=1.68421;EPP=18.2106;EPPR=63.8115;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=280;QR=1124;RO=28;RPL=0;RPP=18.2106;RPPR=63.8115;RPR=7;RUN=1;SAF=7;SAP=18.2106;SAR=0;SRF=28;SRP=63.8115;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:16:16,0:16:637:0:0:0,-4.81648,-57.6632 0/1:16:9,7:9:364:7:280:-20.7547,0,-28.3077 0/0:3:3,0:3:123:0:0:0,-0.90309,-11.4648 dDocent_Contig_14564 12 . C A 233.275 . AB=0.297297;ABP=16.2152;AC=3;AF=0.5;AN=6;AO=11;CIGAR=1X;DP=37;DPB=37;DPRA=0;EPP=26.8965;EPPR=59.4686;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=431;QR=1022;RO=26;RPL=0;RPP=26.8965;RPPR=59.4686;RPR=11;RUN=1;SAF=11;SAP=26.8965;SAR=0;SRF=26;SRP=59.4686;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:2:1,1:1:41:1:32:-2.59725,0,-3.49251 0/1:18:16,2:16:630:2:80:-2.17304,0,-51.6116 0/1:17:9,8:9:351:8:319:-23.9599,0,-26.8288 dDocent_Contig_14565 9 . T C 142.079 . AB=0.14;ABP=115.579;AC=3;AF=0.5;AN=6;AO=14;CIGAR=1M1X2M;DP=100;DPB=99.5;DPRA=0;EPP=33.4109;EPPR=178.9;GTI=0;LEN=1;MEANALT=2;MQM=60;MQMR=59.8519;NS=3;NUMALT=3;ODDS=0;PAIRED=1;PAIREDR=0.987654;PAO=0;PQA=0;PQR=0;PRO=0;QA=532;QR=3108;RO=81;RPL=0;RPP=33.4109;RPPR=178.9;RPR=14;RUN=1;SAF=14;SAP=33.4109;SAR=0;SRF=81;SRP=178.9;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|1:64:56,0,0,7:56:2149:0,0,7:0,0,273:-5.64448,-22.5022,-198.856,-22.5022,-198.856,-198.856,0,-176.414,-176.414,-174.307 0|1:5:4,0,0,1:4:148:0,0,1:0,0,39:-2.39141,-3.59553,-15.6868,-3.59553,-15.6868,-15.6868,0,-12.477,-12.477,-12.176 0|1:31:21,2,2,6:21:811:2,2,6:78,80,220:-11.6397,-11.5465,-77.5601,-11.3657,-71.5707,-77.381,0,-60.1882,-60.0089,-64.794 dDocent_Contig_14567 24 . T A 504.088 . AB=0.489796;ABP=3.05462;AC=3;AF=0.5;AN=6;AO=24;CIGAR=1X;DP=49;DPB=49;DPRA=0;EPP=55.1256;EPPR=48.9587;GTI=0;LEN=1;MEANALT=1;MQM=36.0417;MQMR=58.56;NS=3;NUMALT=1;ODDS=0;PAIRED=0;PAIREDR=0.64;PAO=0;PQA=0;PQR=0;PRO=0;QA=951;QR=1002;RO=25;RPL=0;RPP=55.1256;RPPR=57.2971;RPR=24;RUN=1;SAF=24;SAP=55.1256;SAR=0;SRF=24;SRP=48.9587;SRR=1;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:22:8,14:8:318:14:561:-37.0113,0,-22.3627 0/1:18:14,4:14:561:4:148:-3.06723,0,-44.9634 0/1:9:3,6:3:123:6:242:-15.8409,0,-8.75552 dDocent_Contig_14568 17 . A T 78.4238 . AB=0.235294;ABP=13.3567;AC=1;AF=0.166667;AN=6;AO=4;CIGAR=1X;DP=159;DPB=159;DPRA=0.239437;EPP=11.6962;EPPR=339.589;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=160;QR=6197;RO=155;RPL=0;RPP=11.6962;RPPR=339.589;RPR=4;RUN=1;SAF=4;SAP=11.6962;SAR=0;SRF=155;SRP=339.589;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:88:88,0:88:3522:0:0:0,-26.4906,-317.015 0/1:17:13,4:13:522:4:160:-9.66629,0,-42.2088 0/0:54:54,0:54:2153:0:0:0,-16.2556,-193.937 dDocent_Contig_14569 12 . T C 1519.38 . AB=0.657534;ABP=18.746;AC=4;AF=0.666667;AN=6;AO=48;CIGAR=1X3M;DP=73;DPB=73;DPRA=0;EPP=107.241;EPPR=37.7539;GTI=0;LEN=1;MEANALT=2;MQM=60;MQMR=60;NS=3;NUMALT=2;ODDS=6.93889e-18;PAIRED=0;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=1909;QR=635;RO=16;RPL=0;RPP=107.241;RPPR=37.7539;RPR=48;RUN=1;SAF=48;SAP=107.241;SAR=0;SRF=16;SRP=37.7539;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|1:40:7,7,26:7:278:7,26:276,1028:-82.4808,-61.8801,-82.6602,0,-0.181701,-15.0616 1|1:11:0,1,10:0:0:1,10:40,402:-36.7897,-33.5285,-33.2274,-3.65758,0,-0.647281 0|1:22:9,1,12:9:357:1,12:39,479:-36.7467,-36.2508,-65.3362,0,-26.1882,-25.781 dDocent_Contig_14570 17 . G C 224.118 . AB=0.428571;ABP=3.94093;AC=2;AF=0.333333;AN=6;AO=9;CIGAR=1X;DP=31;DPB=31;DPRA=1.05;EPP=22.5536;EPPR=50.7827;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=350;QR=879;RO=22;RPL=0;RPP=22.5536;RPPR=50.7827;RPR=9;RUN=1;SAF=9;SAP=22.5536;SAR=0;SRF=22;SRP=50.7827;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:10:10,0:10:401:0:0:0,-3.0103,-36.4499 0/1:9:7,2:7:274:2:81:-4.97646,0,-22.3179 0/1:12:5,7:5:204:7:269:-20.9581,0,-15.1317 dDocent_Contig_14571 11 . C T 774.732 . AB=0.1;ABP=30.8051;AC=0;AF=0;AN=6;AO=2;CIGAR=3X1M1X1M2X2M1X1M1X1M1X3M1I2M1X;DP=56;DPB=56.0952;DPRA=0;EPP=7.35324;EPPR=37.7539;GTI=0;LEN=1;MEANALT=3;MQM=60;MQMR=60;NS=3;NUMALT=4;ODDS=1.38778e-17;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=74;QR=629;RO=16;RPL=0;RPP=7.35324;RPPR=37.7539;RPR=2;RUN=1;SAF=2;SAP=7.35324;SAR=0;SRF=16;SRP=37.7539;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|0:20:6,2,0,10,2:6:240:2,0,10,2:74,0,382,66:-29.5521,-25.3051,-44.4824,-31.3582,-45.0844,-51.1368,0,-13.7492,-19.8004,-16.7901,-26.0324,-39.758,-45.8096,-14.4799,-45.2075 0|0:13:0,0,0,7,4:0:0:0,0,7,4:0,0,267,155:-34.652,-34.652,-34.652,-34.652,-34.652,-34.652,-12.7512,-12.7512,-12.7512,-10.644,-21.9157,-21.9157,-21.9157,0,-20.7116 0|0:23:10,0,2,7,2:10:389:0,2,7,2:0,80,266,78:-18.792,-21.8023,-53.771,-15.2099,-47.1797,-46.5777,0,-31.9634,-25.372,-29.8561,-15.3908,-47.3597,-40.7683,-25.5525,-46.7577 dDocent_Contig_14572 26 . C G 151.21 . AB=0.25;ABP=20.3821;AC=2;AF=0.333333;AN=6;AO=8;CIGAR=1X;DP=39;DPB=39;DPRA=2.28571;EPP=20.3821;EPPR=70.3259;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=1.73472e-18;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=306;QR=1222;RO=31;RPL=0;RPP=20.3821;RPPR=70.3259;RPR=8;RUN=1;SAF=8;SAP=20.3821;SAR=0;SRF=31;SRP=70.3259;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:7:7,0:7:279:0:0:0,-2.10721,-25.4808 0/1:21:18,3:18:711:3:116:-4.49388,0,-57.9918 0/1:11:6,5:6:232:5:190:-14.1495,0,-17.9365 dDocent_Contig_14573 12 . C T 269.594 . AB=0.0740741;ABP=45.5551;AC=0;AF=0;AN=6;AO=2;CIGAR=1X2M1X;DP=35;DPB=35;DPRA=5.4;EPP=7.35324;EPPR=48.6112;GTI=0;LEN=1;MEANALT=3;MQM=18;MQMR=60;NS=3;NUMALT=2;ODDS=3.46945e-18;PAIRED=0;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=78;QR=827;RO=21;RPL=0;RPP=7.35324;RPPR=48.6112;RPR=2;RUN=1;SAF=2;SAP=7.35324;SAR=0;SRF=21;SRP=48.6112;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|0:27:14,2,10:14:550:2,10:78,385:-27.5699,-29.1803,-73.8342,0,-42.8209,-42.4195 0|0:3:2,0,1:2:80:0,1:0,38:-2.89418,-3.49624,-10.0996,0,-6.98973,-6.6887 0|0:5:5,0,0:5:197:0,0:0,0:0,-1.50515,-18.1066,-1.50515,-18.1066,-18.1066 dDocent_Contig_14574 24 . T A 263.593 . AB=0.137255;ABP=61.2994;AC=0;AF=0;AN=6;AO=7;CIGAR=7M1X3M1X;DP=56;DPB=54.9167;DPRA=0;EPP=18.2106;EPPR=81.1833;GTI=0;LEN=1;MEANALT=2;MQM=60;MQMR=60;NS=3;NUMALT=2;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=281;QR=1426;RO=36;RPL=0;RPP=18.2106;RPPR=81.1833;RPR=7;RUN=1;SAF=7;SAP=18.2106;SAR=0;SRF=36;SRP=81.1833;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|0:36:22,6,8:22:870:6,8:244,311:-18.9224,-5.41095,-75.2075,0,-51.4603,-69.1809 0|0:5:3,0,2:3:121:0,2:0,81:-6.18058,-7.08367,-17.0569,0,-10.3771,-9.77505 0|0:15:11,1,3:11:435:1,3:37,122:-6.7792,-7.0726,-42.561,0,-32.7964,-34.9182 dDocent_Contig_14576 25 . A C 43.6794 . AB=0.173913;ABP=24.253;AC=2;AF=0.333333;AN=6;AO=4;CIGAR=1X;DP=24;DPB=24;DPRA=11.5;EPP=11.6962;EPPR=46.4397;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=0;PAIREDR=0.85;PAO=0;PQA=0;PQR=0;PRO=0;QA=156;QR=773;RO=20;RPL=0;RPP=11.6962;RPPR=46.4397;RPR=4;RUN=1;SAF=4;SAP=11.6962;SAR=0;SRF=20;SRP=46.4397;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:1:1,0:1:41:0:0:0,-0.30103,-4.09457 0/1:13:11,2:11:409:2:75:-3.20541,0,-33.234 0/1:10:8,2:8:323:2:81:-4.67543,0,-26.4283 dDocent_Contig_14577 36 . A G 440.009 . AB=0.444444;ABP=3.9754;AC=2;AF=0.333333;AN=6;AO=17;CIGAR=1X;DP=72;DPB=72;DPRA=0;EPP=39.9253;EPPR=122.441;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=3.46945e-18;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=680;QR=2204;RO=55;RPL=0;RPP=39.9253;RPPR=122.441;RPR=17;RUN=1;SAF=17;SAP=39.9253;SAR=0;SRF=55;SRP=122.441;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:36:35,1:35:1397:1:40:0,-6.8414,-121.986 0/1:4:3,1:3:119:1:41:-2.89045,0,-9.89089 0/1:32:17,15:17:688:15:599:-44.6151,0,-52.6166 dDocent_Contig_14578 125 . G A 225.914 . AB=0.342857;ABP=10.5174;AC=3;AF=0.5;AN=6;AO=12;CIGAR=1X3M1X;DP=35;DPB=35;DPRA=0;EPP=29.068;EPPR=52.9542;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=0.5;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=418;QR=787;RO=23;RPL=0;RPP=29.068;RPPR=52.9542;RPR=12;RUN=1;SAF=0;SAP=29.068;SAR=12;SRF=0;SRP=52.9542;SRR=23;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|1:11:8,3:8:270:3:105:-6.48483,0,-21.318 0|1:11:8,3:8:274:3:104:-6.39176,0,-21.6823 0|1:13:7,6:7:243:6:209:-15.2377,0,-18.2954 dDocent_Contig_14579 33 . C A 48.7731 . AB=0.190476;ABP=20.4855;AC=2;AF=0.333333;AN=6;AO=4;CIGAR=2X;DP=29;DPB=29;DPRA=1.3125;EPP=11.6962;EPPR=57.2971;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=0.88;PAO=0;PQA=0;PQR=0;PRO=0;QA=155;QR=1002;RO=25;RPL=0;RPP=11.6962;RPPR=57.2971;RPR=4;RUN=1;SAF=4;SAP=11.6962;SAR=0;SRF=25;SRP=57.2971;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|1:14:12,2:12:475:2:78:-3.18888,0,-38.8874 0|0:8:8,0:8:323:0:0:0,-2.40824,-29.439 0|1:7:5,2:5:204:2:77:-5.20193,0,-16.6368 dDocent_Contig_14580 7 . A G 880.993 . AB=0.380952;ABP=15.9357;AC=3;AF=0.5;AN=6;AO=40;CIGAR=2X1M1X;DP=105;DPB=105;DPRA=0;EPP=89.8692;EPPR=122.441;GTI=0;LEN=1;MEANALT=2.33333;MQM=60;MQMR=59.6364;NS=3;NUMALT=2;ODDS=1.38778e-17;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=1355;QR=2118;RO=55;RPL=0;RPP=89.8692;RPPR=122.441;RPR=40;RUN=1;SAF=40;SAP=89.8692;SAR=0;SRF=55;SRP=122.441;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|1:58:24,27,7:24:920:27,7:916,273:-67.0026,0,-67.3755,-51.7757,-53.0607,-125.198 0|1:10:8,2,0:8:312:2,0:74,0:-4.01547,0,-25.4346,-6.42371,-26.0367,-32.0866 0|1:37:23,11,0:23:886:11,0:365,0:-22.6028,0,-69.2658,-29.5265,-72.5771,-102.086 dDocent_Contig_14581 143 . A G 57.7047 . AB=0.375;ABP=4.09604;AC=1;AF=0.166667;AN=6;AO=3;CIGAR=1X;DP=15;DPB=15;DPRA=2.28571;EPP=9.52472;EPPR=29.068;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=0;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=104;QR=418;RO=12;RPL=0;RPP=9.52472;RPPR=29.068;RPR=3;RUN=1;SAF=0;SAP=9.52472;SAR=3;SRF=0;SRP=29.068;SRR=12;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:8:5,3:5:174:3:104:-7.29294,0,-13.5937 0/0:2:2,0:2:69:0:0:0,-0.60206,-6.55266 0/0:5:5,0:5:175:0:0:0,-1.50515,-16.0937 dDocent_Contig_14583 14 . T C 283.837 . AB=0.1375;ABP=185.631;AC=1;AF=0.166667;AN=6;AO=37;CIGAR=1X;DP=409;DPB=409;DPRA=0;EPP=83.3548;EPPR=808.627;GTI=0;LEN=1;MEANALT=1.33333;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=1.38778e-17;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=1479;QR=14880;RO=371;RPL=0;RPP=83.3548;RPPR=808.627;RPR=37;RUN=1;SAF=37;SAP=83.3548;SAR=0;SRF=371;SRP=808.627;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:191:179,12:179:7149:12:490:0,-13.0456,-598.608 0/0:58:55,3:55:2217:3:123:0,-5.99495,-188.229 0/1:160:137,22:137:5514:22:866:-30.2076,0,-448.045 dDocent_Contig_14584 25 . T G 649.839 . AB=0.271845;ABP=49.581;AC=2;AF=0.333333;AN=6;AO=30;CIGAR=1X;DP=169;DPB=169;DPRA=0;EPP=68.1545;EPPR=304.845;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=1180;QR=5526;RO=139;RPL=0;RPP=68.1545;RPPR=304.845;RPR=30;RUN=1;SAF=30;SAP=68.1545;SAR=0;SRF=139;SRP=304.845;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:86:61,25:61:2435:25:975:-62.1595,0,-193.403 0/1:17:14,3:14:555:3:123:-6.34728,0,-45.1738 0/0:66:64,2:64:2536:2:82:0,-12.0883,-220.589 dDocent_Contig_14585 17 . C T 440.428 . AB=0.103077;ABP=892.499;AC=2;AF=0.333333;AN=6;AO=74;CIGAR=1M1X;DP=737;DPB=737;DPRA=0;EPP=163.699;EPPR=1420.98;GTI=0;LEN=1;MEANALT=2.33333;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=0.987749;PAO=0;PQA=0;PQR=0;PRO=0;QA=2951;QR=25880;RO=653;RPL=0;RPP=163.699;RPPR=1420.98;RPR=74;RUN=1;SAF=74;SAP=163.699;SAR=0;SRF=653;SRP=1420.98;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|1:407:359,40:359:14229:40:1595:-23.2884,0,-1159.08 0|0:87:80,7:80:3157:7:279:0,-0.708834,-258.733 0|1:243:214,27:214:8494:27:1077:-24.277,0,-691.051 dDocent_Contig_14586 117 . C T 32.7088 . AB=0.2;ABP=14.7363;AC=1;AF=0.166667;AN=6;AO=4;CIGAR=1X;DP=40;DPB=40;DPRA=2;EPP=11.6962;EPPR=81.1833;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=138;QR=1236;RO=36;RPL=0;RPP=11.6962;RPPR=81.1833;RPR=4;RUN=1;SAF=0;SAP=11.6962;SAR=4;SRF=0;SRP=81.1833;SRR=36;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:17:16,1:16:548:1:35:0,-1.61888,-46.1462 0/0:8:8,0:8:276:0:0:0,-2.40824,-25.1759 0/1:15:12,3:12:412:3:103:-5.09452,0,-32.8943 dDocent_Contig_14587 9 . T C 750.213 . AB=0.1875;ABP=30.1537;AC=4;AF=0.666667;AN=6;AO=6;CIGAR=1X4M;DP=65;DPB=65;DPRA=0;EPP=16.0391;EPPR=59.4686;GTI=0;LEN=1;MEANALT=3;MQM=52.5;MQMR=58.6923;NS=3;NUMALT=3;ODDS=0;PAIRED=0;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=232;QR=1009;RO=26;RPL=0;RPP=16.0391;RPPR=59.4686;RPR=6;RUN=1;SAF=6;SAP=16.0391;SAR=0;SRF=26;SRP=59.4686;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|1:33:13,17,0,3:13:498:17,0,3:667,0,123:-49.3393,0,-35.4454,-53.2527,-40.5629,-93.8372,-43.0963,-30.4052,-83.6824,-82.7793 0|1:23:12,5,3,3:12:472:5,3,3:199,116,121:-12.4167,0,-37.3665,-6.61165,-29.4624,-44.5645,-9.72779,-32.5586,-39.1526,-47.655 1|1:9:1,4,3,1:1:39:4,3,1:160,116,36:-18.7882,-6.31859,-8.32238,-9.56813,0,-11.8721,-16.1552,-6.59451,-9.84255,-19.0604 dDocent_Contig_14588 30 . T G 1540.29 . AB=0.671053;ABP=22.325;AC=3;AF=0.5;AN=6;AO=51;CIGAR=1X;DP=76;DPB=76;DPRA=0;EPP=113.755;EPPR=57.2971;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=6.93889e-18;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=2016;QR=998;RO=25;RPL=0;RPP=113.755;RPPR=57.2971;RPR=51;RUN=1;SAF=51;SAP=113.755;SAR=0;SRF=25;SRP=57.2971;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:25:10,15:10:397:15:601:-46.9038,0,-28.5628 0/1:31:10,21:10:399:21:834:-66.0446,0,-26.9371 0/1:20:5,15:5:202:15:581:-46.6034,0,-12.5415 dDocent_Contig_14589 1 . N G 76.8682 . AB=0;ABP=0;AC=2;AF=1;AN=2;AO=2;CIGAR=1X;DP=2;DPB=2;DPRA=0;EPP=7.35324;EPPR=0;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=0;NS=1;NUMALT=1;ODDS=5.99146;PAIRED=1;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=81;QR=0;RO=0;RPL=0;RPP=7.35324;RPPR=0;RPR=2;RUN=1;SAF=2;SAP=7.35324;SAR=0;SRF=0;SRP=0;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 1/1:2:0,2:0:0:2:81:-7.68573,-0.60206,0 ./.:.:.:.:.:.:.:. ./.:.:.:.:.:.:.:. dDocent_Contig_14590 30 . G T 105.06 . AB=0.157895;ABP=22.325;AC=1;AF=0.166667;AN=6;AO=3;CIGAR=1X3M1X;DP=74;DPB=74;DPRA=0;EPP=9.52472;EPPR=128.956;GTI=0;LEN=1;MEANALT=4;MQM=60;MQMR=60;NS=3;NUMALT=2;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=119;QR=2302;RO=58;RPL=0;RPP=9.52472;RPPR=128.956;RPR=3;RUN=1;SAF=3;SAP=9.52472;SAR=0;SRF=58;SRP=128.956;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|0:52:46,0,5:46:1820:0,5:0,203:-2.89997,-16.7473,-166.521,0,-149.777,-148.272 0|1:19:11,3,3:11:441:3,3:119,119:-6.48422,0,-35.4334,-0.000374854,-26.5416,-35.4338 0|0:3:1,0,2:1:41:0,2:0,78:-6.49969,-6.80072,-10.1914,0,-3.79354,-3.19148 dDocent_Contig_14593 24 . A T 252.191 . AB=0.173469;ABP=93.769;AC=3;AF=0.5;AN=6;AO=17;CIGAR=1X;DP=98;DPB=98;DPRA=0;EPP=39.9253;EPPR=178.9;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=59.5185;NS=3;NUMALT=1;ODDS=0;PAIRED=0;PAIREDR=0.419753;PAO=0;PQA=0;PQR=0;PRO=0;QA=657;QR=3221;RO=81;RPL=0;RPP=39.9253;RPPR=178.9;RPR=17;RUN=1;SAF=17;SAP=39.9253;SAR=0;SRF=81;SRP=178.9;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:54:44,10:44:1762:10:378:-18.1098,0,-141.09 0/1:8:6,2:6:238:2:79:-5.08939,0,-19.3841 0/1:36:31,5:31:1221:5:200:-7.54263,0,-99.3248 dDocent_Contig_14594 35 . C T 470.296 . AB=0.0833333;ABP=57.2971;AC=0;AF=0;AN=6;AO=3;CIGAR=2X;DP=48;DPB=48;DPRA=9;EPP=9.52472;EPPR=61.6401;GTI=0;LEN=1;MEANALT=2;MQM=60;MQMR=60;NS=3;NUMALT=2;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=115;QR=1083;RO=27;RPL=0;RPP=9.52472;RPPR=61.6401;RPR=3;RUN=1;SAF=3;SAP=9.52472;SAR=0;SRF=27;SRP=61.6401;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|0:36:22,3,11:22:880:3,11:115,426:-28.3716,-25.5564,-97.1486,0,-63.0648,-69.1901 0|0:4:0,0,4:0:0:0,4:0,145:-13.4016,-13.4016,-13.4016,-1.20412,-1.20412,0 0|0:8:5,0,3:5:203:0,3:0,120:-8.77907,-10.2842,-27.0303,0,-17.1479,-16.2448 dDocent_Contig_14595 13 . C T 33.1457 . AB=0.166667;ABP=20.3821;AC=1;AF=0.166667;AN=6;AO=4;CIGAR=1X;DP=37;DPB=37;DPRA=3.2;EPP=11.6962;EPPR=74.6689;GTI=0;LEN=1;MEANALT=1;MQM=45.5;MQMR=59.3333;NS=3;NUMALT=1;ODDS=0;PAIRED=0;PAIREDR=0.969697;PAO=0;PQA=0;PQR=0;PRO=0;QA=153;QR=1345;RO=33;RPL=0;RPP=11.6962;RPPR=74.6689;RPR=4;RUN=1;SAF=4;SAP=11.6962;SAR=0;SRF=33;SRP=74.6689;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:18:15,3:15:614:3:112:-4.8363,0,-50.1779 0/0:5:5,0:5:204:0:0:0,-1.50515,-18.744 0/0:14:13,1:13:527:1:41:0,-0.211736,-43.4036 dDocent_Contig_14596 8 . A T 147.886 . AB=0.228571;ABP=25.4075;AC=3;AF=0.5;AN=6;AO=8;CIGAR=1X2M;DP=35;DPB=35;DPRA=0;EPP=20.3821;EPPR=50.7827;GTI=0;LEN=1;MEANALT=1.33333;MQM=60;MQMR=60;NS=3;NUMALT=2;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=296;QR=841;RO=22;RPL=0;RPP=20.3821;RPPR=50.7827;RPR=8;RUN=1;SAF=8;SAP=20.3821;SAR=0;SRF=22;SRP=50.7827;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|1:10:9,0,1:9:351:0,1:0,39:-0.886264,-3.59553,-32.4484,0,-29.2426,-28.9415 0|1:4:2,0,2:2:71:0,2:0,74:-5.82131,-6.42337,-12.2006,0,-6.13952,-5.53746 0|1:21:11,5,5:11:419:5,5:192,183:-12.4586,0,-32.8735,-0.826613,-19.431,-33.6877 dDocent_Contig_14598 11 . A C 131.264 . AB=0.183673;ABP=45.5977;AC=3;AF=0.5;AN=6;AO=9;CIGAR=1X;DP=49;DPB=49;DPRA=0;EPP=22.5536;EPPR=89.8692;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=3.46945e-18;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=358;QR=1615;RO=40;RPL=0;RPP=22.5536;RPPR=89.8692;RPR=9;RUN=1;SAF=9;SAP=22.5536;SAR=0;SRF=40;SRP=89.8692;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:18:15,3:15:598:3:118:-5.58397,0,-48.7386 0/1:15:11,4:11:446:4:159:-10.1769,0,-35.9807 0/1:16:14,2:14:571:2:81:-2.86925,0,-46.9154 dDocent_Contig_14599 89 . G C 41.5313 . AB=0.190476;ABP=20.4855;AC=1;AF=0.166667;AN=6;AO=5;CIGAR=1X;DP=110;DPB=110;DPRA=0.695652;EPP=13.8677;EPPR=231.015;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=1.73472e-18;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=167;QR=3532;RO=105;RPL=5;RPP=13.8677;RPPR=231.015;RPR=0;RUN=1;SAF=5;SAP=13.8677;SAR=0;SRF=105;SRP=231.015;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:46:46,0:46:1577:0:0:0,-13.8474,-142.223 0/1:21:17,4:17:552:4:133:-5.97701,0,-43.6663 0/0:43:42,1:42:1403:1:34:0,-9.54538,-123.161 dDocent_Contig_14600 11 . A G 264.472 . AB=0.258065;ABP=18.771;AC=3;AF=0.5;AN=6;AO=10;CIGAR=1X;DP=42;DPB=42;DPRA=1.83333;EPP=24.725;EPPR=72.4974;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=406;QR=1297;RO=32;RPL=0;RPP=24.725;RPPR=72.4974;RPR=10;RUN=1;SAF=10;SAP=24.725;SAR=0;SRF=32;SRP=72.4974;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:31:23,8:23:930:8:326:-20.3779,0,-74.6708 1/1:2:0,2:0:0:2:80:-7.59179,-0.60206,0 0/0:9:9,0:9:367:0:0:0,-2.70927,-33.3953 dDocent_Contig_14601 59 . G A 789.024 . AB=0.396825;ABP=8.83536;AC=4;AF=0.666666;AN=6;AO=25;CIGAR=1X4M;DP=72;DPB=72;DPRA=0;EPP=57.2971;EPPR=83.3548;GTI=0;LEN=1;MEANALT=2;MQM=60;MQMR=60;NS=3;NUMALT=2;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=914;QR=1403;RO=37;RPL=25;RPP=57.2971;RPPR=83.3548;RPR=0;RUN=1;SAF=25;SAP=57.2971;SAR=0;SRF=37;SRP=83.3548;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|1:53:28,2,23:28:1061:2,23:69,841:-60.3044,-63.1291,-149.523,0,-81.4166,-80.0964 0|1:9:8,1,0:8:306:1,0:36,0:-0.889005,0,-25.1881,-3.29724,-25.4892,-28.4241 1|1:10:1,7,2:1:36:7,2:239,73:-22.1078,-3.03199,-3.86054,-16.4391,0,-18.7768 dDocent_Contig_14602 9 . T G 163.154 . 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AB=0.285714;ABP=5.80219;AC=1;AF=0.166667;AN=6;AO=2;CIGAR=1X;DP=48;DPB=48;DPRA=0.341463;EPP=7.35324;EPPR=102.898;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=76;QR=1691;RO=46;RPL=2;RPP=7.35324;RPPR=102.898;RPR=0;RUN=1;SAF=2;SAP=7.35324;SAR=0;SRF=46;SRP=102.898;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:24:24,0:24:914:0:0:0,-7.22472,-82.5733 0/1:7:5,2:5:185:2:76:-5.1076,0,-14.9011 0/0:17:17,0:17:592:0:0:0,-5.11751,-53.6029 dDocent_Contig_14605 7 . A C 823.491 . 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T A 817.115 . 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A T 841.125 . AB=0.256944;ABP=76.9007;AC=3;AF=0.5;AN=6;AO=37;CIGAR=1X;DP=144;DPB=144;DPRA=0;EPP=83.3548;EPPR=20.0777;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=0.891892;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=1466;QR=4303;RO=107;RPL=37;RPP=83.3548;RPPR=20.0777;RPR=0;RUN=1;SAF=37;SAP=83.3548;SAR=0;SRF=107;SRP=235.358;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:74:58,16:58:2344:16:645:-36.1084,0,-188.835 0/1:33:22,11:22:881:11:429:-29.0287,0,-69.6649 0/1:37:27,10:27:1078:10:392:-24.4982,0,-86.1666 dDocent_Contig_14610 145 . C T 1251.19 . AB=0.608696;ABP=10.0912;AC=3;AF=0.5;AN=6;AO=42;CIGAR=1X;DP=69;DPB=69;DPRA=0;EPP=94.2121;EPPR=61.6401;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=1671;QR=1072;RO=27;RPL=0;RPP=94.2121;RPPR=61.6401;RPR=42;RUN=1;SAF=0;SAP=94.2121;SAR=42;SRF=0;SRP=61.6401;SRR=27;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:41:18,23:18:719:23:907:-69.59,0,-52.6897 0/1:2:1,1:1:38:1:38:-3.19521,0,-3.19521 0/1:26:8,18:8:315:18:726:-57.8389,0,-20.8869 dDocent_Contig_14612 43 . C T 663.956 . AB=0.384615;ABP=6.01695;AC=4;AF=0.666667;AN=6;AO=23;CIGAR=1X;DP=39;DPB=39;DPRA=0;EPP=52.9542;EPPR=37.7539;GTI=0;LEN=1;MEANALT=1;MQM=59.3913;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=0.956522;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=853;QR=648;RO=16;RPL=0;RPP=52.9542;RPPR=37.7539;RPR=23;RUN=1;SAF=23;SAP=52.9542;SAR=0;SRF=16;SRP=37.7539;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:14:7,7:7:286:7:243:-17.9129,0,-21.9004 0/1:12:9,3:9:362:3:117:-7.29755,0,-29.3318 1/1:13:0,13:0:0:13:493:-44.708,-3.91339,0 dDocent_Contig_14613 118 . C G 344.134 . AB=0.274194;ABP=30.4689;AC=1;AF=0.166667;AN=6;AO=17;CIGAR=1X;DP=82;DPB=82;DPRA=6.2;EPP=39.9253;EPPR=144.156;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=603;QR=2189;RO=65;RPL=0;RPP=39.9253;RPPR=144.156;RPR=17;RUN=1;SAF=0;SAP=39.9253;SAR=17;SRF=0;SRP=144.156;SRR=65;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:62:45,17:45:1507:17:603:-35.9362,0,-117.253 0/0:4:4,0:4:138:0:0:0,-1.20412,-12.7604 0/0:16:16,0:16:544:0:0:0,-4.81648,-49.2825 dDocent_Contig_14614 126 . T A 42.9945 . AB=0.172414;ABP=30.0414;AC=2;AF=0.333333;AN=6;AO=6;CIGAR=1X;DP=47;DPB=47;DPRA=0;EPP=16.0391;EPPR=92.0407;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=210;QR=1303;RO=41;RPL=0;RPP=16.0391;RPPR=92.0407;RPR=6;RUN=1;SAF=0;SAP=16.0391;SAR=6;SRF=0;SRP=92.0407;SRR=41;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:23:20,3:20:647:3:106:-2.96547,0,-51.6113 0/0:18:17,1:17:527:1:34:0,-2.01963,-44.3283 0/1:6:4,2:4:129:2:70:-4.84122,0,-10.1229 dDocent_Contig_14615 143 . C A 45.9696 . AB=0.666667;ABP=3.73412;AC=1;AF=0.166667;AN=6;AO=2;CIGAR=2X3M2X1M1X1M2X1M1X;DP=15;DPB=15;DPRA=0.5;EPP=7.35324;EPPR=29.068;GTI=0;LEN=1;MEANALT=1;MQM=47;MQMR=60;NS=3;NUMALT=1;ODDS=8.67362e-19;PAIRED=0;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=78;QR=410;RO=12;RPL=0;RPP=7.35324;RPPR=29.068;RPR=2;RUN=1;SAF=2;SAP=7.35324;SAR=0;SRF=0;SRP=29.068;SRR=12;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|0:5:5,0:5:171:0:0:0,-1.50515,-15.7266 0|1:3:1,2:1:35:2:78:-6.38553,0,-2.59554 0|0:7:6,0:6:204:0:0:0,-1.80618,-18.3455 dDocent_Contig_14617 7 . A T 844.619 . AB=0.612245;ABP=8.37251;AC=2;AF=0.333333;AN=6;AO=30;CIGAR=1X;DP=54;DPB=54;DPRA=4.9;EPP=68.1545;EPPR=55.1256;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=3.46945e-18;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=1134;QR=934;RO=24;RPL=0;RPP=68.1545;RPPR=55.1256;RPR=30;RUN=1;SAF=30;SAP=68.1545;SAR=0;SRF=24;SRP=55.1256;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:25:6,19:6:233:19:724:-57.9645,0,-13.8143 0/0:5:5,0:5:195:0:0:0,-1.50515,-17.9242 0/1:24:13,11:13:506:11:410:-30.0202,0,-38.6646 dDocent_Contig_14618 98 . N T 58.9002 . AB=0;ABP=0;AC=2;AF=1;AN=2;AO=2;CIGAR=1X;DP=2;DPB=2;DPRA=0;EPP=7.35324;EPPR=0;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=0;NS=1;NUMALT=1;ODDS=5.99146;PAIRED=1;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=62;QR=0;RO=0;RPL=2;RPP=7.35324;RPPR=0;RPR=0;RUN=1;SAF=2;SAP=7.35324;SAR=0;SRF=0;SRP=0;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 1/1:2:0,2:0:0:2:62:-5.88894,-0.60206,0 ./.:.:.:.:.:.:.:. ./.:.:.:.:.:.:.:. dDocent_Contig_14619 10 . C T 130.042 . AB=0.25;ABP=18.2106;AC=2;AF=0.333333;AN=6;AO=8;CIGAR=1X;DP=58;DPB=58;DPRA=0;EPP=20.3821;EPPR=111.584;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=310;QR=1998;RO=50;RPL=0;RPP=20.3821;RPPR=111.584;RPR=8;RUN=1;SAF=8;SAP=20.3821;SAR=0;SRF=50;SRP=111.584;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:30:29,1:29:1152:1:41:0,-4.93633,-99.8622 0/1:11:7,4:7:281:4:149:-10.4569,0,-22.3497 0/1:17:14,3:14:565:3:120:-6.07018,0,-46.075 dDocent_Contig_14621 17 . C T 386.62 . AB=0.253521;ABP=40.4758;AC=3;AF=0.5;AN=6;AO=18;CIGAR=1X;DP=71;DPB=71;DPRA=0;EPP=42.0968;EPPR=118.098;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=716;QR=2105;RO=53;RPL=0;RPP=42.0968;RPPR=118.098;RPR=18;RUN=1;SAF=18;SAP=42.0968;SAR=0;SRF=53;SRP=118.098;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:33:26,7:26:1050:7:283:-15.9094,0,-84.856 0/1:14:8,6:8:313:6:230:-16.8474,0,-24.3199 0/1:24:19,5:19:742:5:203:-11.4281,0,-59.8743 dDocent_Contig_14622 107 . N A 671.022 . AB=0;ABP=0;AC=6;AF=1;AN=6;AO=23;CIGAR=1X;DP=23;DPB=23;DPRA=0;EPP=52.9542;EPPR=0;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=0;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=730;QR=0;RO=0;RPL=0;RPP=52.9542;RPPR=0;RPR=23;RUN=1;SAF=0;SAP=52.9542;SAR=23;SRF=0;SRP=0;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 1/1:9:0,9:0:0:9:261:-23.7723,-2.70927,0 1/1:4:0,4:0:0:4:125:-11.5598,-1.20412,0 1/1:10:0,10:0:0:10:344:-31.2929,-3.0103,0 dDocent_Contig_14623 25 . G A 306.746 . AB=0.153285;ABP=146.058;AC=3;AF=0.5;AN=6;AO=21;CIGAR=1X;DP=137;DPB=137;DPRA=0;EPP=48.6112;EPPR=254.901;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=6.93889e-18;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=848;QR=4605;RO=116;RPL=0;RPP=48.6112;RPPR=254.901;RPR=21;RUN=1;SAF=21;SAP=48.6112;SAR=0;SRF=116;SRP=254.901;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:79:67,12:67:2667:12:483:-20.0384,0,-216.368 0/1:10:7,3:7:256:3:121:-8.2699,0,-20.3721 0/1:48:42,6:42:1682:6:244:-7.88918,0,-137.155 dDocent_Contig_14624 70 . C T 78.8686 . AB=0.205882;ABP=28.557;AC=2;AF=0.333333;AN=6;AO=7;CIGAR=1X;DP=37;DPB=37;DPRA=5.66667;EPP=18.2106;EPPR=68.1545;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=233;QR=1026;RO=30;RPL=7;RPP=18.2106;RPPR=68.1545;RPR=0;RUN=1;SAF=7;SAP=18.2106;SAR=0;SRF=30;SRP=68.1545;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:25:20,5:20:677:5:161:-7.28102,0,-53.718 0/0:3:3,0:3:104:0:0:0,-0.90309,-9.70302 0/1:9:7,2:7:245:2:72:-4.12745,0,-19.682 dDocent_Contig_14625 48 . A G 90.9997 . AB=0.140625;ABP=74.8046;AC=3;AF=0.5;AN=6;AO=9;CIGAR=1X;DP=64;DPB=64;DPRA=0;EPP=22.5536;EPPR=122.441;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=0.444444;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=350;QR=2139;RO=55;RPL=0;RPP=22.5536;RPPR=122.441;RPR=9;RUN=1;SAF=9;SAP=22.5536;SAR=0;SRF=55;SRP=122.441;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:26:22,4:22:853:4:148:-5.85,0,-69.2611 0/1:23:21,2:21:809:2:81:-0.762044,0,-66.2082 0/1:15:12,3:12:477:3:121:-6.76454,0,-38.7653 dDocent_Contig_14626 28 . C G 133.108 . AB=0.277778;ABP=18.4519;AC=3;AF=0.5;AN=6;AO=10;CIGAR=1X;DP=36;DPB=36;DPRA=0;EPP=24.725;EPPR=59.4686;GTI=0;LEN=1;MEANALT=1;MQM=33.2;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=0.1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=397;QR=1053;RO=26;RPL=0;RPP=24.725;RPPR=59.4686;RPR=10;RUN=1;SAF=10;SAP=24.725;SAR=0;SRF=26;SRP=59.4686;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:14:7,7:7:282:7:281:-14.696,0,-21.5371 0/1:7:6,1:6:245:1:41:-1.98736,0,-20.3223 0/1:15:13,2:13:526:2:75:-1.16775,0,-43.1717 dDocent_Contig_14628 7 . A G 58.6583 . AB=0.185185;ABP=26.2531;AC=1;AF=0.166667;AN=6;AO=10;CIGAR=1X;DP=217;DPB=217;DPRA=0;EPP=24.725;EPPR=426.825;GTI=0;LEN=1;MEANALT=1;MQM=59.7;MQMR=57.1594;NS=3;NUMALT=1;ODDS=0;PAIRED=0.5;PAIREDR=0.835749;PAO=0;PQA=0;PQR=0;PRO=0;QA=321;QR=7909;RO=207;RPL=0;RPP=24.725;RPPR=452.505;RPR=10;RUN=1;SAF=10;SAP=24.725;SAR=0;SRF=204;SRP=426.825;SRR=3;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:113:111,2:111:4247:2:54:0,-28.887,-359.557 0/1:27:22,5:22:845:5:172:-7.68974,0,-68.2447 0/0:77:74,3:74:2817:3:95:0,-14.3165,-233.004 dDocent_Contig_14629 10 . C T 199.822 . AB=0.192982;ABP=49.6779;AC=2;AF=0.333333;AN=6;AO=13;CIGAR=1X;DP=86;DPB=86;DPRA=0;EPP=31.2394;EPPR=161.528;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=525;QR=2946;RO=73;RPL=0;RPP=31.2394;RPPR=161.528;RPR=13;RUN=1;SAF=13;SAP=31.2394;SAR=0;SRF=73;SRP=161.528;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:40:31,9:31:1252:9:361:-20.8123,0,-100.904 0/1:17:15,2:15:598:2:82:-2.66217,0,-49.0394 0/0:29:27,2:27:1096:2:82:0,-0.950192,-91.1431 dDocent_Contig_14631 9 . T C 101.601 . AB=0.235294;ABP=13.3567;AC=1;AF=0.166667;AN=6;AO=4;CIGAR=1X1M1X3M1X2M1X;DP=47;DPB=47;DPRA=0;EPP=11.6962;EPPR=79.0118;GTI=0;LEN=1;MEANALT=1;MQM=30;MQMR=60;NS=3;NUMALT=4;ODDS=6.93889e-18;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=158;QR=1369;RO=35;RPL=0;RPP=11.6962;RPPR=79.0118;RPR=4;RUN=1;SAF=4;SAP=11.6962;SAR=0;SRF=35;SRP=79.0118;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|0:23:18,0,3,0,2:18:702:0,3,0,2:0,123,0,78:-4.74559,-10.1641,-67.8577,0,-57.7028,-56.7998,-10.1641,-67.8577,-57.7028,-67.8577,-3.76046,-61.4463,-51.2913,-61.4463,-60.8443 0|0:7:4,0,0,2,1:4:159:0,0,2,1:0,0,77,37:-5.12821,-6.33233,-19.4334,-6.33233,-19.4334,-19.4334,0,-13.113,-13.113,-12.5109,-3.31028,-16.4097,-16.4097,-10.0914,-16.1086 0|1:17:13,4,0,0,0:13:508:4,0,0,0:158,0,0,0:-5.80869,0,-40.9497,-9.72208,-42.1538,-51.5582,-9.72208,-42.1538,-51.5582,-51.5582,-9.72208,-42.1538,-51.5582,-51.5582,-51.5582 dDocent_Contig_14632 69 . C A 30.9511 . AB=0.285714;ABP=5.80219;AC=1;AF=0.166667;AN=6;AO=4;CIGAR=1X;DP=65;DPB=65;DPRA=2;EPP=11.6962;EPPR=135.47;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=148;QR=2183;RO=61;RPL=4;RPP=11.6962;RPPR=135.47;RPR=0;RUN=1;SAF=4;SAP=11.6962;SAR=0;SRF=61;SRP=135.47;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:45:43,2:43:1539:2:74:0,-6.52047,-131.771 0/1:7:5,2:5:183:2:74:-4.91867,0,-14.719 0/0:13:13,0:13:461:0:0:0,-3.91339,-41.8224 dDocent_Contig_14634 21 . T C 107.622 . AB=0.176471;ABP=33.9218;AC=1;AF=0.166667;AN=6;AO=6;CIGAR=1X;DP=82;DPB=82;DPRA=1.41667;EPP=16.0391;EPPR=168.042;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=246;QR=3053;RO=76;RPL=0;RPP=16.0391;RPPR=168.042;RPR=6;RUN=1;SAF=6;SAP=16.0391;SAR=0;SRF=76;SRP=168.042;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:34:28,6:28:1123:6:246:-12.2851,0,-91.1185 0/0:14:14,0:14:550:0:0:0,-4.21442,-49.837 0/0:34:34,0:34:1380:0:0:0,-10.235,-124.451 dDocent_Contig_14635 12 . T C 247.689 . AB=0.434783;ABP=3.86001;AC=2;AF=0.333333;AN=6;AO=10;CIGAR=1X2M1X;DP=35;DPB=35;DPRA=0.958333;EPP=24.725;EPPR=57.2971;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=383;QR=983;RO=25;RPL=0;RPP=24.725;RPPR=57.2971;RPR=10;RUN=1;SAF=10;SAP=24.725;SAR=0;SRF=25;SRP=57.2971;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|0:12:12,0:12:468:0:0:0,-3.61236,-42.4698 0|1:7:4,3:4:160:3:121:-9.17299,0,-12.6766 0|1:16:9,7:9:355:7:262:-19.1188,0,-27.4957 dDocent_Contig_14636 54 . G T 105.462 . AB=0.1875;ABP=30.1537;AC=1;AF=0.166667;AN=6;AO=6;CIGAR=1X;DP=49;DPB=49;DPRA=3.76471;EPP=16.0391;EPPR=96.3836;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=237;QR=1730;RO=43;RPL=6;RPP=16.0391;RPPR=96.3836;RPR=0;RUN=1;SAF=6;SAP=16.0391;SAR=0;SRF=43;SRP=96.3836;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:32:26,6:26:1046:6:237:-12.0687,0,-84.7966 0/0:2:2,0:2:78:0:0:0,-0.60206,-7.4033 0/0:15:15,0:15:606:0:0:0,-4.51545,-54.8784 dDocent_Contig_14637 107 . N A 491.724 . AB=0;ABP=0;AC=6;AF=1;AN=6;AO=20;CIGAR=1X;DP=20;DPB=20;DPRA=0;EPP=46.4397;EPPR=0;GTI=0;LEN=1;MEANALT=1;MQM=52.25;MQMR=0;NS=3;NUMALT=1;ODDS=0;PAIRED=0.8;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=554;QR=0;RO=0;RPL=0;RPP=46.4397;RPPR=0;RPR=20;RUN=1;SAF=0;SAP=46.4397;SAR=20;SRF=0;SRP=0;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 1/1:6:0,6:0:0:6:172:-15.7644,-1.80618,0 1/1:2:0,2:0:0:2:57:-5.41438,-0.60206,0 1/1:12:0,12:0:0:12:325:-27.5161,-3.61236,0 dDocent_Contig_14638 125 . A T 34.5706 . AB=0.1875;ABP=16.582;AC=1;AF=0.166667;AN=6;AO=3;CIGAR=1X1M1X;DP=27;DPB=27;DPRA=2.90909;EPP=9.52472;EPPR=55.1256;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=0;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=105;QR=824;RO=24;RPL=0;RPP=9.52472;RPPR=55.1256;RPR=3;RUN=1;SAF=0;SAP=9.52472;SAR=3;SRF=0;SRP=55.1256;SRR=24;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|1:16:13,3:13:448:3:105:-4.97968,0,-35.8336 0|0:4:4,0:4:137:0:0:0,-1.20412,-12.6682 0|0:7:7,0:7:239:0:0:0,-2.10721,-21.8439 dDocent_Contig_14639 107 . N G 127.607 . AB=0;ABP=0;AC=2;AF=1;AN=2;AO=4;CIGAR=1X;DP=4;DPB=4;DPRA=0;EPP=11.6962;EPPR=0;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=0;NS=1;NUMALT=1;ODDS=7.37776;PAIRED=1;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=138;QR=0;RO=0;RPL=0;RPP=11.6962;RPPR=0;RPR=4;RUN=1;SAF=0;SAP=11.6962;SAR=4;SRF=0;SRP=0;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL ./.:.:.:.:.:.:.:. ./.:.:.:.:.:.:.:. 1/1:4:0,4:0:0:4:138:-12.7604,-1.20412,0 dDocent_Contig_14641 50 . G A 1362.06 . AB=0.429825;ABP=7.88659;AC=3;AF=0.5;AN=6;AO=49;CIGAR=1X;DP=114;DPB=114;DPRA=0;EPP=109.412;EPPR=144.156;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=0.830769;PAO=0;PQA=0;PQR=0;PRO=0;QA=1945;QR=2590;RO=65;RPL=49;RPP=109.412;RPPR=144.156;RPR=0;RUN=1;SAF=49;SAP=109.412;SAR=0;SRF=65;SRP=144.156;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:48:23,25:23:923:25:990:-74.9488,0,-68.9213 0/1:16:9,7:9:361:7:277:-20.4824,0,-28.0365 0/1:50:33,17:33:1306:17:678:-46.2972,0,-102.755 dDocent_Contig_14642 44 . G A 3484.34 . AB=0.71519;ABP=66.5602;AC=3;AF=0.5;AN=6;AO=113;CIGAR=1X;DP=158;DPB=158;DPRA=0;EPP=248.387;EPPR=92.2337;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=0.955556;PAO=0;PQA=0;PQR=0;PRO=0;QA=4453;QR=1770;RO=45;RPL=0;RPP=248.387;RPPR=84.1269;RPR=113;RUN=1;SAF=113;SAP=248.387;SAR=0;SRF=44;SRP=92.2337;SRR=1;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:78:11,67:11:426:67:2640:-214.264,0,-15.2066 0/1:16:9,7:9:352:7:273:-20.1164,0,-27.2205 0/1:64:25,39:25:992:39:1540:-119.576,0,-70.3139 dDocent_Contig_14643 41 . C T 50.4931 . AB=0.173913;ABP=24.253;AC=2;AF=0.333333;AN=6;AO=4;CIGAR=1X;DP=29;DPB=29;DPRA=1.91667;EPP=11.6962;EPPR=57.2971;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=0.5;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=163;QR=1019;RO=25;RPL=0;RPP=11.6962;RPPR=57.2971;RPR=4;RUN=1;SAF=4;SAP=11.6962;SAR=0;SRF=25;SRP=57.2971;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:17:15,2:15:612:2:82:-2.66217,0,-50.2994 0/0:6:6,0:6:244:0:0:0,-1.80618,-22.3388 0/1:6:4,2:4:163:2:81:-5.87955,0,-13.2522 dDocent_Contig_14645 8 . A T 2885.51 . AB=0.08;ABP=194.534;AC=5;AF=0.833333;AN=6;AO=10;CIGAR=1X8M;DP=161;DPB=160.667;DPRA=0;EPP=24.725;EPPR=63.8115;GTI=0;LEN=1;MEANALT=4;MQM=60;MQMR=60;NS=3;NUMALT=3;ODDS=0;PAIRED=0.9;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=381;QR=1106;RO=28;RPL=0;RPP=24.725;RPPR=63.8115;RPR=10;RUN=1;SAF=10;SAP=24.725;SAR=0;SRF=28;SRP=63.8115;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 1|1:84:13,26,31,7:13:513:26,31,7:1033,1190,269:-136.592,-55.4538,-89.8403,-42.8387,0,-75.7181,-118.423,-75.5842,-62.9682,-158.528 0|1:36:10,3,22,0:10:394:3,22,0:116,867,0:-68.3283,-61.8118,-93.3236,0,-22.8948,-25.7985,-71.3386,-94.2267,-32.4211,-103.754 1|1:41:5,9,24,3:5:199:9,24,3:357,944,112:-89.1534,-61.2695,-74.9475,-13.0035,0,-22.1671,-81.4902,-68.4886,-20.2259,-96.9738 dDocent_Contig_14646 118 . C A 105.491 . AB=0.212121;ABP=26.7649;AC=2;AF=0.333333;AN=6;AO=7;CIGAR=1X;DP=37;DPB=37;DPRA=4.125;EPP=18.2106;EPPR=68.1545;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=249;QR=976;RO=30;RPL=0;RPP=18.2106;RPPR=68.1545;RPR=7;RUN=1;SAF=0;SAP=18.2106;SAR=7;SRF=0;SRP=68.1545;SRR=30;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:20:18,2:18:598:2:72:-0.816123,0,-48.1115 0/0:4:4,0:4:141:0:0:0,-1.20412,-13.0371 0/1:13:8,5:8:237:5:177:-12.3636,0,-17.7053 dDocent_Contig_14648 38 . T A 83.1008 . AB=0.230769;ABP=11.1951;AC=1;AF=0.166667;AN=6;AO=3;CIGAR=18M1X3M;DP=36;DPB=35.4545;DPRA=2.6;EPP=9.52472;EPPR=68.1545;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=2;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=121;QR=1170;RO=30;RPL=0;RPP=9.52472;RPPR=68.1545;RPR=3;RUN=1;SAF=3;SAP=9.52472;SAR=0;SRF=30;SRP=68.1545;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|0:18:15,3,0:15:589:3,0:106,0:-4.46556,0,-47.9324,-8.98101,-48.8355,-57.457 0|0:5:5,0,0:5:190:0,0:0,0:0,-1.50515,-17.4662,-1.50515,-17.4662,-17.4662 0|1:13:10,0,3:10:391:0,3:0,121:-7.36681,-10.3771,-42.5142,0,-32.5371,-31.634 dDocent_Contig_14649 32 . T G 748.703 . AB=0.585366;ABP=5.60547;AC=4;AF=0.666667;AN=6;AO=25;CIGAR=1X;DP=42;DPB=42;DPRA=0;EPP=57.2971;EPPR=39.9253;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=996;QR=681;RO=17;RPL=0;RPP=57.2971;RPPR=39.9253;RPR=25;RUN=1;SAF=25;SAP=57.2971;SAR=0;SRF=17;SRP=39.9253;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:17:8,9:8:324:9:353:-27.0127,0,-24.4117 1/1:1:0,1:0:0:1:40:-3.99568,-0.30103,0 0/1:24:9,15:9:357:15:603:-47.3841,0,-25.2658 dDocent_Contig_14650 43 . A G 43.7763 . AB=0.181818;ABP=22.3561;AC=2;AF=0.333333;AN=6;AO=4;CIGAR=1X;DP=26;DPB=26;DPRA=2.75;EPP=5.18177;EPPR=50.7827;GTI=0;LEN=1;MEANALT=1;MQM=59.5;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=153;QR=884;RO=22;RPL=1;RPP=5.18177;RPPR=50.7827;RPR=3;RUN=1;SAF=4;SAP=11.6962;SAR=0;SRF=22;SRP=50.7827;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:13:11,2:11:443:2:82:-3.86629,0,-36.3114 0/1:9:7,2:7:285:2:71:-4.0308,0,-23.3151 0/0:4:4,0:4:156:0:0:0,-1.20412,-14.4141 dDocent_Contig_14651 8 . A G 129.807 . AB=0.15625;ABP=68.6973;AC=2;AF=0.333333;AN=6;AO=10;CIGAR=1X;DP=176;DPB=176;DPRA=0.285714;EPP=24.725;EPPR=363.475;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=0.6;PAIREDR=0.879518;PAO=0;PQA=0;PQR=0;PRO=0;QA=388;QR=6336;RO=166;RPL=0;RPP=24.725;RPPR=363.475;RPR=10;RUN=1;SAF=10;SAP=24.725;SAR=0;SRF=166;SRP=363.475;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:112:112,0:112:4279:0:0:0,-33.7154,-385.186 0/1:35:28,7:28:1066:7:272:-14.3112,0,-85.7101 0/1:29:26,3:26:991:3:116:-2.08783,0,-80.7721 dDocent_Contig_14652 41 . C T 221.409 . AB=0.294118;ABP=15.5282;AC=3;AF=0.5;AN=6;AO=10;CIGAR=1X;DP=34;DPB=34;DPRA=0;EPP=24.725;EPPR=55.1256;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=408;QR=946;RO=24;RPL=0;RPP=24.725;RPPR=55.1256;RPR=10;RUN=1;SAF=10;SAP=24.725;SAR=0;SRF=24;SRP=55.1256;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:12:7,5:7:285:5:205:-15.2226,0,-22.412 0/1:14:12,2:12:457:2:82:-3.56526,0,-37.2533 0/1:8:5,3:5:204:3:121:-8.87196,0,-16.3358 dDocent_Contig_14653 115 . A T 58.4279 . AB=0.375;ABP=4.09604;AC=1;AF=0.166667;AN=6;AO=3;CIGAR=1X;DP=57;DPB=57;DPRA=0.326531;EPP=9.52472;EPPR=120.27;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=36.8519;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=0.685185;PAO=0;PQA=0;PQR=0;PRO=0;QA=108;QR=1914;RO=54;RPL=0;RPP=9.52472;RPPR=120.27;RPR=3;RUN=1;SAF=0;SAP=9.52472;SAR=3;SRF=0;SRP=120.27;SRR=54;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:36:36,0:36:1277:0:0:0,-10.8371,-80.821 0/1:8:5,3:5:179:3:108:-7.66669,0,-6.31825 0/0:13:13,0:13:458:0:0:0,-3.91339,-33.7834 dDocent_Contig_14656 14 . T C 2170.8 . AB=0.605042;ABP=14.4151;AC=3;AF=0.5;AN=6;AO=72;CIGAR=1X;DP=119;DPB=119;DPRA=0;EPP=159.356;EPPR=105.07;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=2861;QR=1872;RO=47;RPL=0;RPP=159.356;RPPR=105.07;RPR=72;RUN=1;SAF=72;SAP=159.356;SAR=0;SRF=47;SRP=105.07;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:65:27,38:27:1093:38:1516:-117.115,0,-79.0882 0/1:5:1,4:1:41:4:160:-13.2778,0,-2.58942 0/1:49:19,30:19:738:30:1185:-92.175,0,-51.9911 dDocent_Contig_14658 107 . N A 268.56 . AB=0;ABP=0;AC=6;AF=1;AN=6;AO=8;CIGAR=1X;DP=8;DPB=8;DPRA=0;EPP=20.3821;EPPR=0;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=0;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=280;QR=0;RO=0;RPL=0;RPP=20.3821;RPPR=0;RPR=8;RUN=1;SAF=0;SAP=20.3821;SAR=8;SRF=0;SRP=0;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 1/1:2:0,2:0:0:2:72:-6.83672,-0.60206,0 1/1:5:0,5:0:0:5:172:-15.8181,-1.50515,0 1/1:1:0,1:0:0:1:36:-3.59827,-0.30103,0 dDocent_Contig_14659 55 . T A 616.495 . AB=0.295918;ABP=38.4629;AC=3;AF=0.5;AN=6;AO=29;CIGAR=1X;DP=98;DPB=98;DPRA=0;EPP=65.983;EPPR=152.842;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=1045;QR=2616;RO=69;RPL=29;RPP=65.983;RPPR=152.842;RPR=0;RUN=1;SAF=29;SAP=65.983;SAR=0;SRF=69;SRP=152.842;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:59:36,23:36:1393:23:845:-58.6134,0,-107.89 0/1:12:9,3:9:347:3:109:-6.55564,0,-27.9775 0/1:27:24,3:24:876:3:91:-0.363164,0,-71.0341 dDocent_Contig_14660 14 . G A 48.7893 . AB=0.125;ABP=51.8684;AC=1;AF=0.166667;AN=6;AO=23;CIGAR=1X;DP=313;DPB=313;DPRA=0;EPP=52.9542;EPPR=628.394;GTI=0;LEN=1;MEANALT=1.66667;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=0.956522;PAIREDR=0.993056;PAO=0;PQA=0;PQR=0;PRO=0;QA=911;QR=11488;RO=288;RPL=0;RPP=52.9542;RPPR=628.394;RPR=23;RUN=1;SAF=23;SAP=52.9542;SAR=0;SRF=288;SRP=628.394;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:178:164,13:164:6515:13:507:0,-7.72046,-540.092 0/1:40:35,5:35:1407:5:204:-6.70283,0,-114.842 0/0:95:89,5:89:3566:5:200:0,-10.3171,-302.578 dDocent_Contig_14661 9 . T G 120.271 . AB=0.24;ABP=17.6895;AC=1;AF=0.25;AN=4;AO=7;CIGAR=1X;DP=42;DPB=42;DPRA=0;EPP=18.2106;EPPR=76.8404;GTI=0;LEN=1;MEANALT=1.5;MQM=60;MQMR=60;NS=2;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=272;QR=1312;RO=34;RPL=0;RPP=18.2106;RPPR=76.8404;RPR=7;RUN=1;SAF=7;SAP=18.2106;SAR=0;SRF=34;SRP=76.8404;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:25:18,6:18:692:6:233:-13.7259,0,-54.9991 ./.:.:.:.:.:.:.:. 0/0:17:16,1:16:620:1:39:0,-1.22095,-52.243 dDocent_Contig_14662 53 . T A 2253.72 . AB=0.534351;ABP=4.35297;AC=4;AF=0.666667;AN=6;AO=76;CIGAR=1X4M;DP=137;DPB=137;DPRA=0;EPP=168.042;EPPR=111.584;GTI=0;LEN=1;MEANALT=1.66667;MQM=60;MQMR=60;NS=3;NUMALT=3;ODDS=0;PAIRED=0.947368;PAIREDR=0.88;PAO=0;PQA=0;PQR=0;PRO=0;QA=2939;QR=1973;RO=50;RPL=76;RPP=168.042;RPPR=87.0897;RPR=0;RUN=1;SAF=76;SAP=168.042;SAR=0;SRF=47;SRP=87.0897;SRR=3;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|1:92:40,0,52,0:40:1579:0,52,0:0,2015,0:-153.868,-165.909,-295.834,0,-130.316,-114.662,-165.909,-295.834,-130.316,-295.834 1|1:6:0,0,6,0:0:0:0,6,0:0,231,0:-21.1547,-21.1547,-21.1547,-1.80618,-1.80618,0,-21.1547,-21.1547,-1.80618,-21.1547 0|1:39:10,4,18,7:10:394:4,18,7:160,693,279:-53.8714,-43.6999,-74.9114,0,-19.2307,-26.9932,-33.9044,-53.1388,-9.43613,-64.2133 dDocent_Contig_14663 9 . T C 39.5297 . AB=0.130435;ABP=84.8654;AC=3;AF=0.5;AN=6;AO=9;CIGAR=1X6M1X1M1X;DP=75;DPB=75;DPRA=0;EPP=22.5536;EPPR=133.299;GTI=0;LEN=1;MEANALT=1.5;MQM=34;MQMR=60;NS=3;NUMALT=3;ODDS=0;PAIRED=0;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=306;QR=2330;RO=60;RPL=0;RPP=22.5536;RPPR=133.299;RPR=9;RUN=1;SAF=9;SAP=22.5536;SAR=0;SRF=60;SRP=133.299;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|1:43:35,0,3,5:35:1364:0,3,5:0,69,170:-1.97324,-12.5093,-124.711,-8.05343,-120.227,-119.324,0,-112.278,-107.796,-110.773 0|1:6:3,2,1,0:3:116:2,1,0:80,23,0:-3.71296,0,-9.06596,-3.14592,-8.21558,-12.433,-4.61605,-9.66802,-12.734,-14.2086 0|1:26:22,0,0,4:22:850:0,0,4:0,0,136:-3.63973,-10.2624,-80.1368,-10.2624,-80.1368,-80.1368,0,-70.1961,-70.1961,-68.992 dDocent_Contig_14664 14 . A T 54.851 . AB=0.10101;ABP=139.901;AC=1;AF=0.166667;AN=6;AO=11;CIGAR=1X;DP=147;DPB=147;DPRA=1.72727;EPP=26.8965;EPPR=298.331;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=439;QR=5428;RO=136;RPL=0;RPP=26.8965;RPPR=298.331;RPR=11;RUN=1;SAF=11;SAP=26.8965;SAR=0;SRF=136;SRP=298.331;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:99:89,10:89:3572:10:405:-7.00787,0,-291.703 0/0:15:14,1:14:546:1:34:0,-1.11654,-46.0823 0/0:33:33,0:33:1310:0:0:0,-9.93399,-118.167 dDocent_Contig_14665 13 . T C 44.5063 . AB=0.4;ABP=3.44459;AC=1;AF=0.166667;AN=6;AO=2;CIGAR=1X;DP=32;DPB=32;DPRA=0.37037;EPP=7.35324;EPPR=68.1545;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=8.67362e-19;PAIRED=1;PAIREDR=0.7;PAO=0;PQA=0;PQR=0;PRO=0;QA=82;QR=1210;RO=30;RPL=0;RPP=7.35324;RPPR=68.1545;RPR=2;RUN=1;SAF=2;SAP=7.35324;SAR=0;SRF=30;SRP=68.1545;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:14:14,0:14:565:0:0:0,-4.21442,-51.1925 0/0:13:13,0:13:522:0:0:0,-3.91339,-47.3264 0/1:5:3,2:3:123:2:82:-6.27453,0,-9.95964 dDocent_Contig_14666 13 . G T 105.844 . AB=0.0595238;ABP=144.57;AC=1;AF=0.166667;AN=6;AO=5;CIGAR=2X1M18D5M;DP=109;DPB=104.038;DPRA=0;EPP=13.8677;EPPR=189.757;GTI=0;LEN=1;MEANALT=4;MQM=60;MQMR=60;NS=3;NUMALT=3;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=200;QR=3352;RO=86;RPL=0;RPP=13.8677;RPPR=189.757;RPR=5;RUN=1;SAF=5;SAP=13.8677;SAR=0;SRF=86;SRP=189.757;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|0:50:41,1,6,0:41:1580:1,6,0:38,222,0:-5.86457,-15.086,-144.547,0,-126.692,-128.002,-18.2068,-144.848,-129.808,-147.965 0|0:25:22,0,3,0:22:859:0,3,0:0,121,0:-3.75445,-10.3771,-80.9798,0,-71.004,-70.1009,-10.3771,-80.9798,-71.004,-80.9798 0|1:34:23,4,4,2:23:913:4,4,2:162,155,81:-6.45354,0,-73.9918,-0.634547,-62.462,-74.6187,-6.69071,-68.5154,-69.1425,-81.2741 dDocent_Contig_14667 19 . T A 157.256 . AB=0.368421;ABP=5.8675;AC=2;AF=0.333333;AN=6;AO=7;CIGAR=1X;DP=27;DPB=27;DPRA=1.1875;EPP=18.2106;EPPR=46.4397;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=1.73472e-18;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=269;QR=804;RO=20;RPL=0;RPP=18.2106;RPPR=46.4397;RPR=7;RUN=1;SAF=7;SAP=18.2106;SAR=0;SRF=20;SRP=46.4397;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:11:9,2:9:366:2:81:-4.3744,0,-29.9932 0/0:8:8,0:8:322:0:0:0,-2.40824,-29.3478 0/1:8:3,5:3:116:5:188:-14.8734,0,-8.40804 dDocent_Contig_14668 61 . G T 176.505 . AB=0.266667;ABP=17.1973;AC=2;AF=0.333333;AN=6;AO=8;CIGAR=1X;DP=31;DPB=31;DPRA=15;EPP=20.3821;EPPR=52.9542;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=1.73472e-18;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=321;QR=889;RO=23;RPL=8;RPP=20.3821;RPPR=52.9542;RPR=0;RUN=1;SAF=8;SAP=20.3821;SAR=0;SRF=23;SRP=52.9542;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:22:15,7:15:598:7:282:-19.1303,0,-47.5377 0/0:1:1,0:1:40:0:0:0,-0.30103,-3.99568 0/1:8:7,1:7:251:1:39:-1.48832,0,-20.5249 dDocent_Contig_14669 68 . T C 874.292 . AB=0.637931;ABP=12.5947;AC=3;AF=0.5;AN=6;AO=37;CIGAR=1X;DP=58;DPB=58;DPRA=0;EPP=83.3548;EPPR=48.6112;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=3.46945e-18;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=1216;QR=729;RO=21;RPL=37;RPP=83.3548;RPPR=48.6112;RPR=0;RUN=1;SAF=37;SAP=83.3548;SAR=0;SRF=21;SRP=48.6112;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:38:13,25:13:448:25:801:-60.9458,0,-29.2108 0/1:10:5,5:5:176:5:172:-12.8078,0,-13.1751 0/1:10:3,7:3:105:7:243:-19.1986,0,-6.78586 dDocent_Contig_14670 9 . T G 218.922 . AB=0.184211;ABP=68.8402;AC=2;AF=0.333333;AN=6;AO=16;CIGAR=1X;DP=93;DPB=93;DPRA=0;EPP=37.7539;EPPR=165.871;GTI=0;LEN=1;MEANALT=1.33333;MQM=56.9375;MQMR=43.3467;NS=3;NUMALT=1;ODDS=0;PAIRED=0.9375;PAIREDR=0.613333;PAO=0;PQA=0;PQR=0;PRO=0;QA=604;QR=2872;RO=75;RPL=0;RPP=37.7539;RPPR=165.871;RPR=16;RUN=1;SAF=16;SAP=37.7539;SAR=0;SRF=75;SRP=165.871;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:45:33,10:33:1254:10:371:-20.4208,0,-82.4091 0/0:17:15,2:15:580:2:78:0,-0.371375,-43.6285 0/1:31:27,4:27:1038:4:155:-4.99351,0,-51.1057 dDocent_Contig_14671 152 . A T 38.4128 . AB=0.146341;ABP=47.552;AC=3;AF=0.5;AN=6;AO=6;CIGAR=1X;DP=41;DPB=41;DPRA=0;EPP=16.0391;EPPR=79.0118;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=219;QR=1377;RO=35;RPL=0;RPP=16.0391;RPPR=79.0118;RPR=6;RUN=1;SAF=0;SAP=16.0391;SAR=6;SRF=0;SRP=79.0118;SRR=35;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:25:22,3:22:885:3:99:-1.70594,0,-72.4336 0/1:7:5,2:5:197:2:81:-5.57852,0,-15.9983 0/1:9:8,1:8:295:1:39:-1.18729,0,-24.1796 dDocent_Contig_14672 28 . T G 350.405 . AB=0.291667;ABP=21.1059;AC=1;AF=0.166667;AN=6;AO=16;CIGAR=1X;DP=92;DPB=92;DPRA=0;EPP=37.7539;EPPR=168.042;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=0.875;PAIREDR=0.986842;PAO=0;PQA=0;PQR=0;PRO=0;QA=626;QR=3070;RO=76;RPL=0;RPP=37.7539;RPPR=168.042;RPR=16;RUN=1;SAF=16;SAP=37.7539;SAR=0;SRF=76;SRP=168.042;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:48:34,14:34:1376:14:563:-36.5633,0,-109.644 0/0:12:11,1:11:439:1:22:0,-1.41243,-37.6649 0/0:32:31,1:31:1255:1:41:0,-5.53839,-109.123 dDocent_Contig_14673 42 . G C 862.728 . AB=0.482143;ABP=3.16541;AC=4;AF=0.666667;AN=6;AO=30;CIGAR=1X;DP=59;DPB=59;DPRA=0;EPP=68.1545;EPPR=65.983;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=1173;QR=1145;RO=29;RPL=0;RPP=68.1545;RPPR=65.983;RPR=30;RUN=1;SAF=30;SAP=68.1545;SAR=0;SRF=29;SRP=65.983;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:38:16,22:16:639:22:851:-65.4645,0,-46.4049 1/1:3:0,3:0:0:3:120:-11.1877,-0.90309,0 0/1:18:13,5:13:506:5:202:-13.1433,0,-40.4642 dDocent_Contig_14677 24 . A T 67.2148 . AB=0.135593;ABP=71.062;AC=3;AF=0.5;AN=6;AO=8;CIGAR=1X;DP=59;DPB=59;DPRA=0;EPP=20.3821;EPPR=113.755;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=320;QR=2052;RO=51;RPL=0;RPP=20.3821;RPPR=113.755;RPR=8;RUN=1;SAF=8;SAP=20.3821;SAR=0;SRF=51;SRP=113.755;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:41:37,4:37:1488:4:163:-2.7162,0,-121.819 0/1:3:1,2:1:40:2:76:-6.31117,0,-3.09259 0/1:15:13,2:13:524:2:81:-3.17028,0,-42.9918 dDocent_Contig_14679 8 . A C 111.123 . AB=0.109375;ABP=87.8334;AC=2;AF=0.333333;AN=6;AO=7;CIGAR=1X2M4D1X2M2X;DP=64;DPB=62.0833;DPRA=0;EPP=18.2106;EPPR=118.098;GTI=0;LEN=1;MEANALT=1.33333;MQM=60;MQMR=60;NS=3;NUMALT=2;ODDS=0;PAIRED=1;PAIREDR=1;PAO=5;PQA=190;PQR=0;PRO=0;QA=270;QR=2081;RO=53;RPL=0;RPP=18.2106;RPPR=118.098;RPR=7;RUN=1;SAF=7;SAP=18.2106;SAR=0;SRF=53;SRP=118.098;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|0:28:23,1,4:23:904:1,4:37,149:-5.27093,-9.16827,-83.2366,0,-71.343,-73.1652 0|1:8:7,1,0:7:272:1,0:40,0:-1.58744,0,-22.4385,-3.69465,-22.7396,-26.0361 0|1:28:23,5,0:23:905:5,0:193,0:-9.31146,0,-73.3351,-16.2352,-74.8403,-90.6884 dDocent_Contig_14681 8 . A G 44.6126 . AB=0.166667;ABP=31.9633;AC=2;AF=0.333333;AN=6;AO=5;CIGAR=1X;DP=56;DPB=56;DPRA=0.576923;EPP=13.8677;EPPR=113.755;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=181;QR=1927;RO=51;RPL=0;RPP=13.8677;RPPR=113.755;RPR=5;RUN=1;SAF=5;SAP=13.8677;SAR=0;SRF=51;SRP=113.755;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:26:26,0:26:986:0:0:0,-7.82678,-89.0509 0/1:19:16,3:16:594:3:103:-3.88896,0,-48.0662 0/1:11:9,2:9:347:2:78:-4.09214,0,-28.2785 dDocent_Contig_14682 18 . G A 49.331 . AB=0.109589;ABP=99.6557;AC=2;AF=0.333333;AN=6;AO=10;CIGAR=1X;DP=109;DPB=109;DPRA=0;EPP=24.725;EPPR=215.815;GTI=0;LEN=1;MEANALT=1.33333;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=397;QR=3908;RO=98;RPL=0;RPP=24.725;RPPR=215.815;RPR=10;RUN=1;SAF=10;SAP=24.725;SAR=0;SRF=98;SRP=215.815;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:62:54,7:54:2151:7:276:-6.44727,0,-175.004 0/1:11:10,1:10:394:1:41:-0.783237,0,-32.5014 0/0:36:34,2:34:1363:2:80:0,-3.2455,-115.331 dDocent_Contig_14683 95 . T C 455.363 . AB=0.425532;ABP=5.27418;AC=3;AF=0.5;AN=6;AO=20;CIGAR=1X;DP=47;DPB=47;DPRA=0;EPP=46.4397;EPPR=61.6401;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=713;QR=969;RO=27;RPL=20;RPP=46.4397;RPPR=61.6401;RPR=0;RUN=1;SAF=20;SAP=46.4397;SAR=0;SRF=27;SRP=61.6401;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:21:16,5:16:569:5:175:-9.77193,0,-45.221 0/1:15:8,7:8:292:7:251:-18.4221,0,-22.1153 0/1:11:3,8:3:108:8:287:-22.8652,0,-6.76384 dDocent_Contig_14684 10 . A G 110.774 . AB=0.0789474;ABP=61.5258;AC=1;AF=0.166667;AN=6;AO=3;CIGAR=1X2M;DP=46;DPB=46;DPRA=0;EPP=9.52472;EPPR=79.0118;GTI=0;LEN=1;MEANALT=2;MQM=60;MQMR=60;NS=3;NUMALT=3;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=121;QR=1355;RO=35;RPL=0;RPP=9.52472;RPPR=79.0118;RPR=3;RUN=1;SAF=3;SAP=9.52472;SAR=0;SRF=35;SRP=79.0118;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|0:30:23,0,2,5:23:906:0,2,5:0,80,201:-9.64156,-16.5652,-91.0848,-9.97585,-84.4945,-83.8924,0,-74.5197,-67.9292,-73.0145 0|0:8:7,0,0,1:7:270:0,0,1:0,0,41:-1.68633,-3.79354,-25.941,-3.79354,-25.941,-25.941,0,-22.5539,-22.5539,-22.2529 0|1:8:5,2,1,0:5:179:2,1,0:78,41,0:-4.89324,0,-13.9465,-3.0077,-11.1558,-17.2755,-6.39839,-14.5485,-17.5765,-20.9659 dDocent_Contig_14685 98 . N A 66.4848 . AB=0;ABP=0;AC=2;AF=1;AN=2;AO=2;CIGAR=1X;DP=2;DPB=2;DPRA=0;EPP=7.35324;EPPR=0;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=0;NS=1;NUMALT=1;ODDS=5.99146;PAIRED=1;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=70;QR=0;RO=0;RPL=2;RPP=7.35324;RPPR=0;RPR=0;RUN=1;SAF=2;SAP=7.35324;SAR=0;SRF=0;SRP=0;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL ./.:.:.:.:.:.:.:. ./.:.:.:.:.:.:.:. 1/1:2:0,2:0:0:2:70:-6.6474,-0.60206,0 dDocent_Contig_14686 108 . A G 65.7283 . AB=0.25;ABP=13.8677;AC=2;AF=0.333333;AN=6;AO=5;CIGAR=1X2M1X;DP=23;DPB=24;DPRA=3.33333;EPP=13.8677;EPPR=37.7539;GTI=0;LEN=1;MEANALT=1.5;MQM=47.2;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=0;PAIREDR=1;PAO=4;PQA=140;PQR=0;PRO=0;QA=173;QR=551;RO=16;RPL=0;RPP=13.8677;RPPR=37.7539;RPR=5;RUN=1;SAF=0;SAP=13.8677;SAR=5;SRF=0;SRP=37.7539;SRR=16;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|1:10:8,2:8:276:2:69:-3.53007,0,-22.1657 0|0:3:2,0:2:69:0:0:0,-0.60206,-6.20446 0|1:10:6,3:6:206:3:104:-6.56103,0,-15.8836 dDocent_Contig_14688 49 . A C 54.406 . AB=0.269231;ABP=27.0635;AC=4;AF=0.666667;AN=6;AO=15;CIGAR=1X;DP=53;DPB=53;DPRA=0;EPP=35.5824;EPPR=85.5263;GTI=0;LEN=1;MEANALT=1;MQM=19.4;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=0.666667;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=600;QR=1503;RO=38;RPL=15;RPP=35.5824;RPPR=85.5263;RPR=0;RUN=1;SAF=15;SAP=35.5824;SAR=0;SRF=38;SRP=85.5263;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:40:31,9:31:1219:9:363:-3.06882,0,-97.9455 1/1:1:0,1:0:0:1:40:-1.49867,-0.30103,0 0/1:12:7,5:7:284:5:197:-4.37808,0,-22.3216 dDocent_Contig_14690 10 . A T 982.45 . AB=0.416667;ABP=8.07707;AC=3;AF=0.5;AN=6;AO=35;CIGAR=1X1M1X2M1X;DP=84;DPB=84;DPRA=0;EPP=79.0118;EPPR=94.2121;GTI=0;LEN=1;MEANALT=2;MQM=60;MQMR=60;NS=3;NUMALT=2;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=1403;QR=1669;RO=42;RPL=0;RPP=79.0118;RPPR=94.2121;RPR=35;RUN=1;SAF=35;SAP=79.0118;SAR=0;SRF=42;SRP=94.2121;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|1:64:32,25,4:32:1273:25,4:1001,144:-72.8475,0,-97.303,-70.8226,-93.1697,-174.429 0|1:7:4,3,0:4:158:3,0:120,0:-9.08069,0,-12.4928,-10.2848,-13.3959,-23.2832 0|1:13:6,7,0:6:238:7,0:282,0:-21.8398,0,-17.8803,-23.646,-19.9875,-43.2343 dDocent_Contig_14691 160 . G A 117.37 . AB=0.225806;ABP=23.254;AC=2;AF=0.333333;AN=6;AO=7;CIGAR=1X;DP=34;DPB=34;DPRA=5.16667;EPP=18.2106;EPPR=61.6401;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=265;QR=1091;RO=27;RPL=7;RPP=18.2106;RPPR=61.6401;RPR=0;RUN=1;SAF=0;SAP=18.2106;SAR=7;SRF=0;SRP=61.6401;SRR=27;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:15:11,4:11:446:4:149:-9.2585,0,-35.9802 0/0:3:3,0:3:119:0:0:0,-0.90309,-11.0945 0/1:16:13,3:13:526:3:116:-6.00122,0,-42.8705 dDocent_Contig_14693 82 . T G 490.486 . AB=0.5;ABP=3.0103;AC=3;AF=0.5;AN=6;AO=20;CIGAR=1X;DP=40;DPB=40;DPRA=0;EPP=46.4397;EPPR=46.4397;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=728;QR=750;RO=20;RPL=20;RPP=46.4397;RPPR=46.4397;RPR=0;RUN=1;SAF=20;SAP=46.4397;SAR=0;SRF=20;SRP=46.4397;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:19:10,9:10:381:9:330:-24.3304,0,-28.9248 0/1:3:2,1:2:80:1:39:-2.99347,0,-6.68848 0/1:18:8,10:8:289:10:359:-27.2332,0,-20.9384 dDocent_Contig_14694 110 . C G 157.976 . AB=0.264706;ABP=19.3602;AC=2;AF=0.333333;AN=6;AO=9;CIGAR=1X;DP=36;DPB=36;DPRA=8.5;EPP=22.5536;EPPR=61.6401;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=315;QR=904;RO=27;RPL=0;RPP=22.5536;RPPR=61.6401;RPR=9;RUN=1;SAF=0;SAP=22.5536;SAR=9;SRF=0;SRP=61.6401;SRR=27;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:17:10,7:10:346:7:245:-17.2737,0,-26.357 0/0:2:2,0:2:69:0:0:0,-0.60206,-6.55266 0/1:17:15,2:15:489:2:70:-1.52989,0,-39.2027 dDocent_Contig_14695 26 . T C 83.3342 . AB=0.235294;ABP=13.3567;AC=1;AF=0.25;AN=4;AO=4;CIGAR=1X;DP=27;DPB=27;DPRA=1.7;EPP=11.6962;EPPR=52.9542;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=2;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=164;QR=915;RO=23;RPL=0;RPP=11.6962;RPPR=52.9542;RPR=4;RUN=1;SAF=4;SAP=11.6962;SAR=0;SRF=23;SRP=52.9542;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:17:13,4:13:529:4:164:-10.0324,0,-42.8391 0/0:10:10,0:10:386:0:0:0,-3.0103,-35.0866 ./.:.:.:.:.:.:.:. dDocent_Contig_14696 11 . G A 1201.72 . AB=0.546667;ABP=4.429;AC=3;AF=0.5;AN=6;AO=41;CIGAR=1X;DP=75;DPB=75;DPRA=0;EPP=92.0407;EPPR=76.8404;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=1636;QR=1352;RO=34;RPL=0;RPP=92.0407;RPPR=76.8404;RPR=41;RUN=1;SAF=41;SAP=92.0407;SAR=0;SRF=34;SRP=76.8404;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:51:21,30:21:834:30:1195:-92.474,0,-60.0205 0/1:10:2,8:2:78:8:321:-26.2467,0,-4.39248 0/1:14:11,3:11:440:3:120:-6.97327,0,-35.741 dDocent_Contig_14697 11 . G A 469.161 . AB=0.154229;ABP=211.742;AC=3;AF=0.5;AN=6;AO=31;CIGAR=1X;DP=201;DPB=201;DPRA=0;EPP=70.3259;EPPR=363.526;GTI=0;LEN=1;MEANALT=1;MQM=57.5484;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=0;PAIREDR=0.970588;PAO=0;PQA=0;PQR=0;PRO=0;QA=1245;QR=6849;RO=170;RPL=0;RPP=70.3259;RPPR=372.161;RPR=31;RUN=1;SAF=31;SAP=70.3259;SAR=0;SRF=169;SRP=363.526;SRR=1;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:72:61,11:61:2466:11:441:-18.3109,0,-200.4 0/1:62:55,7:55:2204:7:278:-6.69694,0,-179.867 0/1:67:54,13:54:2179:13:526:-27.4311,0,-176.107 dDocent_Contig_14698 13 . A T 32.6084 . AB=0.129032;ABP=40.0654;AC=1;AF=0.166667;AN=6;AO=4;CIGAR=1X;DP=117;DPB=117;DPRA=0.72093;EPP=11.6962;EPPR=248.387;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=0.973451;PAO=0;PQA=0;PQR=0;PRO=0;QA=156;QR=4364;RO=113;RPL=0;RPP=11.6962;RPPR=248.387;RPR=4;RUN=1;SAF=4;SAP=11.6962;SAR=0;SRF=113;SRP=248.387;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:65:65,0:65:2509:0:0:0,-19.5669,-225.988 0/0:21:21,0:21:821:0:0:0,-6.32163,-74.2121 0/1:31:27,4:27:1034:4:156:-5.08451,0,-84.0324 dDocent_Contig_14699 14 . C T 457.721 . AB=0.414634;ABP=5.60547;AC=2;AF=0.333333;AN=6;AO=17;CIGAR=1X;DP=62;DPB=62;DPRA=0.97619;EPP=39.9253;EPPR=100.727;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=56.3556;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=0.466667;PAO=0;PQA=0;PQR=0;PRO=0;QA=677;QR=1736;RO=45;RPL=0;RPP=39.9253;RPPR=100.727;RPR=17;RUN=1;SAF=17;SAP=39.9253;SAR=0;SRF=45;SRP=100.727;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:25:11,14:11:435:14:565:-43.6677,0,-31.7971 0/0:21:21,0:21:790:0:0:0,-6.32163,-71.3166 0/1:16:13,3:13:511:3:112:-5.62724,0,-41.3695 dDocent_Contig_14700 44 . G T 36.6055 . AB=0.285714;ABP=5.80219;AC=1;AF=0.166667;AN=6;AO=2;CIGAR=1X;DP=66;DPB=66;DPRA=0.237288;EPP=7.35324;EPPR=141.985;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=80;QR=2401;RO=64;RPL=0;RPP=7.35324;RPPR=141.985;RPR=2;RUN=1;SAF=2;SAP=7.35324;SAR=0;SRF=64;SRP=141.985;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:44:44,0:44:1647:0:0:0,-13.2453,-148.482 0/0:15:15,0:15:565:0:0:0,-4.51545,-51.188 0/1:7:5,2:5:189:2:80:-5.48436,0,-15.2678 dDocent_Contig_14701 11 . G C 43.6786 . AB=0.116279;ABP=58.0041;AC=1;AF=0.166667;AN=6;AO=5;CIGAR=1X;DP=75;DPB=75;DPRA=2.6875;EPP=13.8677;EPPR=155.013;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=205;QR=2815;RO=70;RPL=0;RPP=13.8677;RPPR=155.013;RPR=5;RUN=1;SAF=5;SAP=13.8677;SAR=0;SRF=70;SRP=155.013;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:43:38,5:38:1525:5:205:-5.89072,0,-124.542 0/0:10:10,0:10:404:0:0:0,-3.0103,-36.7196 0/0:22:22,0:22:886:0:0:0,-6.62266,-80.048 dDocent_Contig_14702 26 . C G 63.9965 . AB=0.0512821;ABP=71.2168;AC=0;AF=0;AN=6;AO=2;CIGAR=2M1X;DP=139;DPB=155;DPRA=0.78;EPP=7.35324;EPPR=280.959;GTI=0;LEN=1;MEANALT=2;MQM=60;MQMR=60;NS=3;NUMALT=2;ODDS=0;PAIRED=1;PAIREDR=0.929688;PAO=0;PQA=0;PQR=0;PRO=0;QA=16;QR=4516;RO=128;RPL=0;RPP=7.35324;RPPR=280.959;RPR=2;RUN=1;SAF=2;SAP=7.35324;SAR=0;SRF=128;SRP=280.959;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|0:68:66,1,0:66:2391:1,0:41,0:0,-16.3192,-211.466,-19.868,-211.767,-215.152 0|0:32:31,1,0:31:1038:1,0:39,0:0,-5.7364,-89.8044,-9.33193,-90.1054,-93.313 0|0:39:31,6,2:31:1087:6,2:213,16:-8.22356,0,-86.8855,-16.7862,-87.8701,-104.618 dDocent_Contig_14703 13 . T A 182.715 . AB=0.333333;ABP=8.80089;AC=2;AF=0.333333;AN=6;AO=8;CIGAR=1X;DP=45;DPB=45;DPRA=0.571429;EPP=20.3821;EPPR=83.3548;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=314;QR=1466;RO=37;RPL=0;RPP=20.3821;RPPR=83.3548;RPR=8;RUN=1;SAF=8;SAP=20.3821;SAR=0;SRF=37;SRP=83.3548;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:16:13,3:13:512:3:120:-6.37083,0,-41.6078 0/1:8:3,5:3:116:5:194:-15.4235,0,-8.4093 0/0:21:21,0:21:838:0:0:0,-6.32163,-75.7338 dDocent_Contig_14704 114 . A G 268.369 . AB=0.333333;ABP=13.8677;AC=3;AF=0.5;AN=6;AO=15;CIGAR=1X;DP=45;DPB=45;DPRA=0;EPP=35.5824;EPPR=68.1545;GTI=0;LEN=1;MEANALT=1;MQM=40;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=514;QR=939;RO=30;RPL=0;RPP=35.5824;RPPR=68.1545;RPR=15;RUN=1;SAF=0;SAP=35.5824;SAR=15;SRF=0;SRP=68.1545;SRR=30;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:24:16,8:16:507:8:271:-16.7662,0,-38.7108 0/1:4:3,1:3:96:1:35:-2.17658,0,-7.75384 0/1:17:11,6:11:336:6:208:-13.33,0,-25.4212 dDocent_Contig_14705 9 . T C 2080.96 . AB=0.435028;ABP=9.50018;AC=3;AF=0.5;AN=6;AO=77;CIGAR=1X2M;DP=177;DPB=177;DPRA=0;EPP=170.214;EPPR=202.786;GTI=0;LEN=1;MEANALT=1.33333;MQM=60;MQMR=60;NS=3;NUMALT=2;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=2933;QR=3492;RO=92;RPL=0;RPP=170.214;RPPR=202.786;RPR=77;RUN=1;SAF=77;SAP=170.214;SAR=0;SRF=92;SRP=202.786;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|1:126:67,8,51:67:2533:8,51:315,1957:-140.457,-134.71,-339.925,0,-181.697,-192.26 0|1:11:4,0,7:4:158:0,7:0,259:-20.3508,-21.5549,-34.5657,0,-13.3964,-11.2892 0|1:40:21,0,19:21:801:0,19:0,717:-52.8113,-59.1329,-124.847,0,-66.0931,-60.3735 dDocent_Contig_14706 9 . T C 48.8331 . AB=0.127273;ABP=69.3784;AC=2;AF=0.333333;AN=6;AO=7;CIGAR=1X;DP=112;DPB=112;DPRA=0.482456;EPP=18.2106;EPPR=231.015;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=269;QR=4051;RO=105;RPL=0;RPP=18.2106;RPPR=231.015;RPR=7;RUN=1;SAF=7;SAP=18.2106;SAR=0;SRF=105;SRP=231.015;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:57:57,0:57:2204:0:0:0,-17.1587,-198.58 0/1:31:27,4:27:1032:4:152:-4.71727,0,-83.8576 0/1:24:21,3:21:815:3:117:-3.68566,0,-66.4505 dDocent_Contig_14707 43 . A G 63.6981 . AB=0.190476;ABP=20.4855;AC=1;AF=0.25;AN=4;AO=4;CIGAR=1X;DP=63;DPB=63;DPRA=0.5;EPP=11.6962;EPPR=98.7391;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=2;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=0.864407;PAO=0;PQA=0;PQR=0;PRO=0;QA=159;QR=2364;RO=59;RPL=0;RPP=11.6962;RPPR=71.062;RPR=4;RUN=1;SAF=4;SAP=11.6962;SAR=0;SRF=55;SRP=98.7391;SRR=4;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:42:42,0:42:1692:0:0:0,-12.6433,-152.502 ./.:.:.:.:.:.:.:. 0/1:21:17,4:17:672:4:159:-8.36981,0,-54.4905 dDocent_Contig_14709 19 . T G 127.615 . AB=0.545455;ABP=3.20771;AC=1;AF=0.166667;AN=6;AO=7;CIGAR=2M1X2M;DP=74;DPB=78.8;DPRA=4.78571;EPP=18.2106;EPPR=144.156;GTI=0;LEN=1;MEANALT=1.5;MQM=36.4286;MQMR=60;NS=3;NUMALT=2;ODDS=3.46945e-18;PAIRED=0;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=244;QR=2519;RO=65;RPL=0;RPP=18.2106;RPPR=144.156;RPR=7;RUN=1;SAF=0;SAP=18.2106;SAR=7;SRF=65;SRP=144.156;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|0:56:55,0,1:55:2128:0,1:0,38:0,-16.5566,-191.38,-13.3587,-188.533,-188.232 0|1:11:3,2,6:3:120:2,6:69,206:-14.5854,-9.87665,-19.1862,0,-4.33421,-8.11188 0|0:7:7,0,0:7:271:0,0:0,0:0,-2.10721,-24.7534,-2.10721,-24.7534,-24.7534 dDocent_Contig_14710 64 . C T 45.8493 . AB=0.210526;ABP=16.8392;AC=2;AF=0.333333;AN=6;AO=5;CIGAR=1X;DP=72;DPB=72;DPRA=0;EPP=13.8677;EPPR=148.499;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=185;QR=2660;RO=67;RPL=5;RPP=13.8677;RPPR=148.499;RPR=0;RUN=1;SAF=5;SAP=13.8677;SAR=0;SRF=67;SRP=148.499;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:53:52,1:52:2058:1:40:0,-11.9589,-181.413 0/1:5:3,2:3:118:2:76:-5.70952,0,-9.49757 0/1:14:12,2:12:484:2:69:-2.33615,0,-39.6967 dDocent_Contig_14712 146 . G T 371.167 . AB=0.65;ABP=6.91895;AC=2;AF=0.333333;AN=6;AO=13;CIGAR=1X;DP=26;DPB=26;DPRA=1.66667;EPP=31.2394;EPPR=31.2394;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=510;QR=521;RO=13;RPL=0;RPP=31.2394;RPPR=31.2394;RPR=13;RUN=1;SAF=0;SAP=31.2394;SAR=13;SRF=0;SRP=31.2394;SRR=13;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:3:2,1:2:82:1:41:-3.19148,0,-6.87659 0/0:6:6,0:6:239:0:0:0,-1.80618,-21.8844 0/1:17:5,12:5:200:12:469:-37.4388,0,-13.2624 dDocent_Contig_14713 103 . N C 162.321 . AB=0;ABP=0;AC=6;AF=1;AN=6;AO=5;CIGAR=5X;DP=5;DPB=5;DPRA=0;EPP=13.8677;EPPR=0;GTI=0;LEN=1;MEANALT=1;MQM=56;MQMR=0;NS=3;NUMALT=1;ODDS=1.69407e-21;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=164;QR=0;RO=0;RPL=0;RPP=13.8677;RPPR=0;RPR=5;RUN=1;SAF=5;SAP=13.8677;SAR=0;SRF=0;SRP=0;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 1|1:1:0,1:0:0:1:35:-3.49863,-0.30103,0 1|1:3:0,3:0:0:3:95:-8.85573,-0.90309,0 1|1:1:0,1:0:0:1:34:-3.39891,-0.30103,0 dDocent_Contig_14715 14 . T G 485.278 . AB=0.403846;ABP=7.18621;AC=2;AF=0.333333;AN=6;AO=21;CIGAR=1X3M1X2M1X;DP=82;DPB=82;DPRA=0.866667;EPP=48.6112;EPPR=135.47;GTI=0;LEN=1;MEANALT=1;MQM=52.1905;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=0.904762;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=793;QR=2416;RO=61;RPL=0;RPP=48.6112;RPPR=135.47;RPR=21;RUN=1;SAF=21;SAP=48.6112;SAR=0;SRF=61;SRP=135.47;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|0:30:30,0:30:1181:0:0:0,-9.0309,-106.573 0|1:32:24,8:24:956:8:313:-14.5876,0,-76.7132 0|1:20:7,13:7:279:13:480:-37.4631,0,-19.4603 dDocent_Contig_14716 18 . T G 1026.77 . AB=0.336134;ABP=30.765;AC=2;AF=0.333333;AN=6;AO=43;CIGAR=1X;DP=157;DPB=157;DPRA=0;EPP=96.3836;EPPR=250.558;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=1693;QR=4585;RO=114;RPL=0;RPP=96.3836;RPPR=250.558;RPR=43;RUN=1;SAF=43;SAP=96.3836;SAR=0;SRF=114;SRP=250.558;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:67:44,23:44:1756:23:911:-62.1258,0,-138.085 0/0:38:35,3:35:1414:3:122:0,-0.066647,-116.137 0/1:52:35,17:35:1415:17:660:-44.0726,0,-111.946 dDocent_Contig_14717 7 . A C 36.5924 . AB=0.101695;ABP=165.613;AC=2;AF=0.333333;AN=6;AO=13;CIGAR=1X;DP=149;DPB=149;DPRA=0;EPP=31.2394;EPPR=298.331;GTI=0;LEN=1;MEANALT=1;MQM=58.1538;MQMR=58.0441;NS=3;NUMALT=1;ODDS=0;PAIRED=0.769231;PAIREDR=0.404412;PAO=0;PQA=0;PQR=0;PRO=0;QA=506;QR=5193;RO=136;RPL=0;RPP=31.2394;RPPR=298.331;RPR=13;RUN=1;SAF=13;SAP=31.2394;SAR=0;SRF=136;SRP=298.331;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:95:86,9:86:3289:9:350:-3.18451,0,-261.238 0/1:23:20,3:20:773:3:117:-3.98669,0,-62.9545 0/0:31:30,1:30:1131:1:39:0,-5.43537,-97.9305 dDocent_Contig_14718 20 . T G 12657.7 . AB=0.0654206;ABP=178.534;AC=0;AF=0;AN=6;AO=7;CIGAR=1X2M1X1M2X1M2X;DP=797;DPB=797;DPRA=0;EPP=18.2106;EPPR=472.048;GTI=0;LEN=1;MEANALT=12;MQM=21;MQMR=60;NS=3;NUMALT=2;ODDS=0;PAIRED=0;PAIREDR=0.0555556;PAO=0;PQA=0;PQR=0;PRO=0;QA=271;QR=8355;RO=216;RPL=0;RPP=18.2106;RPPR=472.048;RPR=7;RUN=1;SAF=7;SAP=18.2106;SAR=0;SRF=216;SRP=472.048;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|0:439:115,0,237:115:4412:0,237:0,9300:-729.979,-764.597,-1126.7,0,-362.109,-290.765 0|0:107:34,7,53:34:1317:7,53:271,2080:-160.846,-160.025,-266.102,0,-97.1765,-92.2718 0|0:251:67,0,122:67:2626:0,122:0,4865:-380.473,-400.642,-616.582,0,-215.961,-179.235 dDocent_Contig_14719 14 . G C 612.46 . AB=0.202381;ABP=67.6375;AC=3;AF=0.5;AN=6;AO=21;CIGAR=6M1X11M;DP=88;DPB=85.3333;DPRA=0;EPP=48.6112;EPPR=115.927;GTI=0;LEN=1;MEANALT=2.33333;MQM=60;MQMR=60;NS=3;NUMALT=3;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=835;QR=2055;RO=52;RPL=0;RPP=48.6112;RPPR=115.927;RPR=21;RUN=1;SAF=21;SAP=48.6112;SAR=0;SRF=52;SRP=115.927;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|1:50:34,2,3,11:34:1348:2,3,11:77,120,447:-26.6417,-30.5568,-140.91,-26.9923,-131.627,-137.046,0,-104.642,-101.078,-107.652 1|1:4:0,0,0,4:0:0:0,0,4:0,0,159:-14.6908,-14.6908,-14.6908,-14.6908,-14.6908,-14.6908,-1.20412,-1.20412,-1.20412,0 0|0:34:18,9,1,6:18:707:9,1,6:351,41,229:-23.436,0,-55.4437,-25.469,-54.7681,-83.3192,-10.0769,-39.3743,-64.8405,-66.419 dDocent_Contig_14721 144 . A G 132.351 . AB=0.375;ABP=5.18177;AC=2;AF=0.333333;AN=6;AO=6;CIGAR=1X;DP=27;DPB=27;DPRA=0.727273;EPP=16.0391;EPPR=48.6112;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=231;QR=815;RO=21;RPL=0;RPP=16.0391;RPPR=48.6112;RPR=6;RUN=1;SAF=0;SAP=16.0391;SAR=6;SRF=0;SRP=48.6112;SRR=21;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:11:11,0:11:425:0:0:0,-3.31133,-38.6036 0/1:12:7,5:7:273:5:194:-14.2202,0,-21.3253 0/1:4:3,1:3:117:1:37:-2.49371,0,-9.70609 dDocent_Contig_14724 27 . T C 325.421 . AB=0.220588;ABP=49.1222;AC=2;AF=0.333333;AN=6;AO=15;CIGAR=4M1X4M;DP=75;DPB=74.4444;DPRA=4.85714;EPP=35.5824;EPPR=120.27;GTI=0;LEN=1;MEANALT=2;MQM=60;MQMR=60;NS=3;NUMALT=2;ODDS=0;PAIRED=0.733333;PAIREDR=0.740741;PAO=0;PQA=0;PQR=0;PRO=0;QA=604;QR=2097;RO=54;RPL=0;RPP=35.5824;RPPR=120.27;RPR=15;RUN=1;SAF=15;SAP=35.5824;SAR=0;SRF=54;SRP=120.27;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|1:53:38,5,9:38:1495:5,9:187,360:-18.2415,-14.3707,-135.855,0,-107.706,-120.308 0|0:7:7,0,0:7:268:0,0:0,0:0,-2.10721,-24.4829,-2.10721,-24.4829,-24.4829 0|1:15:9,0,6:9:334:0,6:0,244:-17.8234,-20.5326,-47.8383,0,-27.6977,-25.8915 dDocent_Contig_14725 31 . T A 129.04 . AB=0.454545;ABP=3.20771;AC=1;AF=0.166667;AN=6;AO=5;CIGAR=1X;DP=55;DPB=55;DPRA=0.5;EPP=13.8677;EPPR=111.584;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=8.67362e-19;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=193;QR=1992;RO=50;RPL=0;RPP=13.8677;RPPR=111.584;RPR=5;RUN=1;SAF=5;SAP=13.8677;SAR=0;SRF=50;SRP=111.584;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:11:6,5:6:244:5:193:-14.4269,0,-19.0275 0/0:30:30,0:30:1197:0:0:0,-9.0309,-108.005 0/0:14:14,0:14:551:0:0:0,-4.21442,-49.9327 dDocent_Contig_14726 71 . C T 779.254 . AB=0.5625;ABP=4.6389;AC=2;AF=0.333333;AN=6;AO=27;CIGAR=1X;DP=50;DPB=50;DPRA=12;EPP=61.6401;EPPR=52.9542;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=1058;QR=801;RO=23;RPL=27;RPP=61.6401;RPPR=52.9542;RPR=0;RUN=1;SAF=27;SAP=61.6401;SAR=0;SRF=23;SRP=52.9542;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:37:15,22:15:491:22:866:-67.1118,0,-33.345 0/0:2:2,0:2:80:0:0:0,-0.60206,-7.59157 0/1:11:6,5:6:230:5:192:-14.3361,0,-17.7543 dDocent_Contig_14727 52 . G A 110.43 . AB=0.3125;ABP=7.89611;AC=1;AF=0.25;AN=4;AO=5;CIGAR=1X;DP=26;DPB=26;DPRA=1.6;EPP=13.8677;EPPR=48.6112;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=2;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=191;QR=821;RO=21;RPL=5;RPP=13.8677;RPPR=48.6112;RPR=0;RUN=1;SAF=5;SAP=13.8677;SAR=0;SRF=21;SRP=48.6112;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:16:11,5:11:427:5:191:-12.742,0,-33.9637 ./.:.:.:.:.:.:.:. 0/0:10:10,0:10:394:0:0:0,-3.0103,-35.8151 dDocent_Contig_14728 1 . N G 48.0265 . AB=0;ABP=0;AC=2;AF=1;AN=2;AO=4;CIGAR=1X;DP=4;DPB=4;DPRA=0;EPP=11.6962;EPPR=0;GTI=0;LEN=1;MEANALT=1;MQM=13;MQMR=0;NS=1;NUMALT=1;ODDS=7.37776;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=144;QR=0;RO=0;RPL=0;RPP=11.6962;RPPR=0;RPR=4;RUN=1;SAF=0;SAP=11.6962;SAR=4;SRF=0;SRP=0;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 1/1:4:0,4:0:0:4:144:-4.80237,-1.20412,0 ./.:.:.:.:.:.:.:. ./.:.:.:.:.:.:.:. dDocent_Contig_14729 190 . C T 180.963 . AB=0.275862;ABP=15.6647;AC=2;AF=0.333333;AN=6;AO=8;CIGAR=1X;DP=36;DPB=36;DPRA=2.07143;EPP=20.3821;EPPR=61.6401;GTI=0;LEN=1;MEANALT=1.5;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=326;QR=1064;RO=27;RPL=8;RPP=20.3821;RPPR=61.6401;RPR=0;RUN=1;SAF=0;SAP=20.3821;SAR=8;SRF=0;SRP=61.6401;SRR=27;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:23:15,7:15:585:7:286:-19.3449,0,-46.2292 0/0:7:7,0:7:274:0:0:0,-2.10721,-25.0249 0/1:6:5,1:5:205:1:40:-2.1895,0,-17.0288 dDocent_Contig_14730 148 . A T 103.252 . AB=0.238095;ABP=15.5221;AC=1;AF=0.166667;AN=6;AO=7;CIGAR=1X;DP=57;DPB=57;DPRA=9;EPP=18.2106;EPPR=111.584;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=282;QR=2014;RO=50;RPL=0;RPP=18.2106;RPPR=111.584;RPR=7;RUN=1;SAF=0;SAP=18.2106;SAR=7;SRF=0;SRP=111.584;SRR=50;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:33:31,2:31:1258:2:81:0,-2.24826,-105.798 0/0:3:3,0:3:119:0:0:0,-0.90309,-11.095 0/1:21:16,5:16:637:5:201:-12.1489,0,-51.3426 dDocent_Contig_14731 26 . C A 1390.13 . AB=0.179245;ABP=97.7357;AC=3;AF=0.5;AN=6;AO=19;CIGAR=1M3D2X2M2X1M;DP=106;DPB=87.1818;DPRA=0;EPP=44.2683;EPPR=81.1833;GTI=0;LEN=1;MEANALT=2.33333;MQM=46.6316;MQMR=60;NS=3;NUMALT=2;ODDS=0;PAIRED=0;PAIREDR=0.888889;PAO=0;PQA=0;PQR=0;PRO=0;QA=722;QR=1383;RO=36;RPL=0;RPP=44.2683;RPPR=81.1833;RPR=19;RUN=1;SAF=19;SAP=44.2683;SAR=0;SRF=36;SRP=81.1833;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|1:44:19,18,6:19:724:18,6:693,221:-51.1257,0,-53.9696,-39.0061,-41.5479,-96.578 0|1:34:10,16,8:10:382:16,8:617,309:-47.658,0,-26.5245,-25.9866,-6.65869,-54.915 0|1:28:7,16,5:7:277:16,5:625,192:-45.7523,0,-17.9925,-32.4263,-7.38622,-53.7281 dDocent_Contig_14732 16 . C T 402.747 . AB=0.159236;ABP=161.362;AC=2;AF=0.333333;AN=6;AO=25;CIGAR=1X;DP=178;DPB=178;DPRA=3.7381;EPP=57.2971;EPPR=335.246;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=59.4248;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=0.986928;PAO=0;PQA=0;PQR=0;PRO=0;QA=1004;QR=6059;RO=153;RPL=0;RPP=57.2971;RPPR=335.246;RPR=25;RUN=1;SAF=25;SAP=57.2971;SAR=0;SRF=153;SRP=335.246;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:94:80,14:80:3191:14:556:-22.0865,0,-254.459 0/0:21:21,0:21:831:0:0:0,-6.32163,-75.1014 0/1:63:52,11:52:2037:11:448:-21.7111,0,-164.553 dDocent_Contig_14733 70 . G A 64.2103 . AB=0;ABP=0;AC=2;AF=0.5;AN=4;AO=2;CIGAR=1X;DP=3;DPB=3;DPRA=2;EPP=7.35324;EPPR=5.18177;GTI=0;LEN=1;MEANALT=1;MQM=40;MQMR=40;NS=2;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=70;QR=37;RO=1;RPL=2;RPP=7.35324;RPPR=5.18177;RPR=0;RUN=1;SAF=2;SAP=7.35324;SAR=0;SRF=1;SRP=5.18177;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:1:1,0:1:37:0:0:0,-0.30103,-3.52359 1/1:2:0,2:0:0:2:70:-6.41934,-0.60206,0 ./.:.:.:.:.:.:.:. dDocent_Contig_14734 17 . G A 172.601 . AB=0.666667;ABP=5.18177;AC=1;AF=0.166667;AN=6;AO=7;CIGAR=1X;DP=53;DPB=53;DPRA=0.761905;EPP=18.2106;EPPR=102.898;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=277;QR=1830;RO=46;RPL=0;RPP=18.2106;RPPR=102.898;RPR=7;RUN=1;SAF=7;SAP=18.2106;SAR=0;SRF=46;SRP=102.898;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:23:22,1:22:877:1:39:0,-3.02713,-75.3451 0/1:9:3,6:3:122:6:238:-19.084,0,-8.66322 0/0:21:21,0:21:831:0:0:0,-6.32163,-75.1041 dDocent_Contig_14735 26 . T G 43.0961 . AB=0.0990099;ABP=144.07;AC=1;AF=0.166667;AN=6;AO=10;CIGAR=1X;DP=369;DPB=369;DPRA=0.753731;EPP=24.725;EPPR=782.569;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=402;QR=14314;RO=359;RPL=0;RPP=24.725;RPPR=782.569;RPR=10;RUN=1;SAF=10;SAP=24.725;SAR=0;SRF=359;SRP=782.569;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:244:244,0:244:9698:0:0:0,-73.4513,-872.219 0/0:24:24,0:24:966:0:0:0,-7.22472,-87.2406 0/1:101:91,10:91:3650:10:402:-6.1335,0,-298.106 dDocent_Contig_14736 10 . A T 942.816 . AB=0.458333;ABP=4.09604;AC=3;AF=0.5;AN=6;AO=33;CIGAR=1X;DP=72;DPB=72;DPRA=0;EPP=74.6689;EPPR=87.6977;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=1338;QR=1556;RO=39;RPL=0;RPP=74.6689;RPPR=87.6977;RPR=33;RUN=1;SAF=33;SAP=74.6689;SAR=0;SRF=39;SRP=87.6977;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:31:16,15:16:644:15:609:-45.8157,0,-48.9616 0/1:8:4,4:4:153:4:158:-12.1911,0,-11.7306 0/1:33:19,14:19:759:14:571:-41.7977,0,-58.692 dDocent_Contig_14737 209 . N G 110.957 . AB=0;ABP=0;AC=2;AF=1;AN=2;AO=3;CIGAR=1X;DP=3;DPB=3;DPRA=0;EPP=9.52472;EPPR=0;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=0;NS=1;NUMALT=1;ODDS=6.68461;PAIRED=1;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=119;QR=0;RO=0;RPL=3;RPP=9.52472;RPPR=0;RPR=0;RUN=1;SAF=0;SAP=9.52472;SAR=3;SRF=0;SRP=0;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 1/1:3:0,3:0:0:3:119:-11.0952,-0.90309,0 ./.:.:.:.:.:.:.:. ./.:.:.:.:.:.:.:. dDocent_Contig_14738 10 . A G 880.647 . AB=0.358696;ABP=18.9659;AC=2;AF=0.333333;AN=6;AO=33;CIGAR=1X;DP=98;DPB=98;DPRA=7.66667;EPP=74.6689;EPPR=144.156;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=0.939394;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=1318;QR=2616;RO=65;RPL=0;RPP=74.6689;RPPR=144.156;RPR=33;RUN=1;SAF=33;SAP=74.6689;SAR=0;SRF=65;SRP=144.156;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:59:38,21:38:1530:21:841:-58.2409,0,-120.179 0/0:6:6,0:6:245:0:0:0,-1.80618,-22.4295 0/1:33:21,12:21:841:12:477:-33.3467,0,-66.0653 dDocent_Contig_14739 64 . G A 48.8276 . AB=0.153846;ABP=30.0702;AC=1;AF=0.166667;AN=6;AO=4;CIGAR=1X;DP=35;DPB=35;DPRA=5.77778;EPP=11.6962;EPPR=70.3259;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=154;QR=1227;RO=31;RPL=4;RPP=11.6962;RPPR=70.3259;RPR=0;RUN=1;SAF=4;SAP=11.6962;SAR=0;SRF=31;SRP=70.3259;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:26:22,4:22:868:4:154:-6.40489,0,-70.6031 0/0:1:1,0:1:41:0:0:0,-0.30103,-4.09457 0/0:8:8,0:8:318:0:0:0,-2.40824,-28.9872 dDocent_Contig_14740 7 . A G 2081.46 . AB=0.0705882;ABP=139.149;AC=0;AF=0;AN=6;AO=6;CIGAR=1M1X8M1X;DP=111;DPB=111.636;DPRA=0;EPP=16.0391;EPPR=68.1545;GTI=0;LEN=1;MEANALT=2;MQM=60;MQMR=60;NS=3;NUMALT=4;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=169;QR=1155;RO=30;RPL=0;RPP=16.0391;RPPR=68.1545;RPR=6;RUN=1;SAF=6;SAP=16.0391;SAR=0;SRF=30;SRP=68.1545;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|0:46:15,0,0,1,30:15:576:0,0,1,30:0,0,39,1206:-94.878,-99.3934,-146.666,-99.3934,-146.666,-146.666,-96.1879,-143.46,-143.46,-143.159,0,-47.2726,-47.2726,-44.0664,-38.2417 0|0:26:5,5,2,0,14:5:193:5,2,0,14:196,77,0,550:-43.873,-42.9067,-57.2505,-39.0489,-52.4339,-54.3124,-45.3781,-58.7557,-54.9144,-61.2412,0,-13.5184,-9.59162,-15.9385,-11.7241 0|0:39:10,0,0,5,24:10:386:0,0,5,24:0,0,130,946:-74.918,-77.9283,-109.632,-77.9283,-109.632,-109.632,-67.7599,-99.4577,-99.4577,-97.9525,0,-31.784,-31.784,-21.6345,-24.5593 dDocent_Contig_14741 11 . A C 146.986 . AB=0.333333;ABP=8.07707;AC=3;AF=0.5;AN=6;AO=7;CIGAR=1X2M1X;DP=21;DPB=21;DPRA=0;EPP=18.2106;EPPR=31.2394;GTI=0;LEN=1;MEANALT=1.33333;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=3.46945e-18;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=274;QR=512;RO=13;RPL=0;RPP=18.2106;RPPR=31.2394;RPR=7;RUN=1;SAF=7;SAP=18.2106;SAR=0;SRF=13;SRP=31.2394;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|1:6:1,5:1:40:5:194:-16.0239,0,-2.1895 0|1:8:6,1:6:240:1:40:-1.4889,0,-19.4692 0|1:7:6,1:6:232:1:40:-1.88847,0,-19.1408 dDocent_Contig_14742 104 . N A 79.4935 . AB=0;ABP=0;AC=4;AF=1;AN=4;AO=3;CIGAR=4X3I2M;DP=3;DPB=4.5;DPRA=0;EPP=9.52472;EPPR=0;GTI=0;LEN=1;MEANALT=1;MQM=29.6667;MQMR=0;NS=2;NUMALT=1;ODDS=0;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=87;QR=0;RO=0;RPL=0;RPP=9.52472;RPPR=0;RPR=3;RUN=1;SAF=3;SAP=9.52472;SAR=0;SRF=0;SRP=0;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 1|1:1:0,1:0:0:1:33:-3.08764,-0.30103,0 .:.:.:.:.:.:.:. 1|1:2:0,2:0:0:2:54:-4.55887,-0.60206,0 dDocent_Contig_14743 84 . G A 102.387 . AB=0.357143;ABP=5.49198;AC=1;AF=0.166667;AN=6;AO=5;CIGAR=1X;DP=43;DPB=43;DPRA=0.965517;EPP=13.8677;EPPR=85.5263;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=177;QR=1273;RO=38;RPL=5;RPP=13.8677;RPPR=85.5263;RPR=0;RUN=1;SAF=5;SAP=13.8677;SAR=0;SRF=38;SRP=85.5263;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:18:18,0:18:607:0:0:0,-5.41854,-54.9478 0/0:11:11,0:11:368:0:0:0,-3.31133,-33.4421 0/1:14:9,5:9:298:5:177:-12.0626,0,-22.9267 dDocent_Contig_14744 22 . A G 439.33 . AB=0.326923;ABP=16.5402;AC=2;AF=0.5;AN=4;AO=17;CIGAR=7M1X1M;DP=52;DPB=48.1111;DPRA=0;EPP=39.9253;EPPR=65.983;GTI=0;LEN=1;MEANALT=2;MQM=60;MQMR=60;NS=2;NUMALT=2;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=682;QR=1146;RO=29;RPL=0;RPP=39.9253;RPPR=65.983;RPR=17;RUN=1;SAF=17;SAP=39.9253;SAR=0;SRF=29;SRP=65.983;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|1:34:14,5,15:14:547:5,15:158,600:-45.2722,-36.8002,-80.2593,0,-32.3358,-40.5081 .:.:.:.:.:.:.:. 0|1:18:15,0,2:15:599:0,2:0,82:-2.25271,-6.76816,-56.0951,0,-49.3258,-48.7238 dDocent_Contig_14746 55 . T C 684.738 . AB=0.575;ABP=4.96463;AC=2;AF=0.333333;AN=6;AO=23;CIGAR=1X;DP=42;DPB=42;DPRA=10;EPP=52.9542;EPPR=44.2683;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=926;QR=724;RO=19;RPL=23;RPP=52.9542;RPPR=44.2683;RPR=0;RUN=1;SAF=23;SAP=52.9542;SAR=0;SRF=19;SRP=44.2683;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:26:8,18:8:305:18:730:-58.1973,0,-19.9818 0/0:2:2,0:2:78:0:0:0,-0.60206,-7.4033 0/1:14:9,5:9:341:5:196:-13.799,0,-26.8299 dDocent_Contig_14747 17 . G A 746.547 . AB=0.541667;ABP=3.73412;AC=3;AF=0.5;AN=6;AO=26;CIGAR=1X;DP=48;DPB=48;DPRA=0;EPP=59.4686;EPPR=50.7827;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=1035;QR=862;RO=22;RPL=0;RPP=59.4686;RPPR=50.7827;RPR=26;RUN=1;SAF=26;SAP=59.4686;SAR=0;SRF=22;SRP=50.7827;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:21:5,16:5:199:16:635:-51.1632,0,-11.9658 0/1:19:10,9:10:389:9:359:-26.9492,0,-29.6458 0/1:8:7,1:7:274:1:41:-1.68633,0,-22.6141 dDocent_Contig_14749 14 . T G 867.417 . AB=0.412698;ABP=7.18091;AC=4;AF=0.666667;AN=6;AO=30;CIGAR=5M1X;DP=67;DPB=63.5;DPRA=0;EPP=68.1545;EPPR=68.1545;GTI=0;LEN=1;MEANALT=1.66667;MQM=60;MQMR=60;NS=3;NUMALT=2;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=1187;QR=1183;RO=30;RPL=0;RPP=68.1545;RPPR=68.1545;RPR=30;RUN=1;SAF=30;SAP=68.1545;SAR=0;SRF=30;SRP=68.1545;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|1:40:20,6,14:20:786:6,14:225,548:-39.0408,-26.6405,-89.4857,0,-46.2426,-60.4498 1|1:4:0,0,4:0:0:0,4:0,162:-14.967,-14.967,-14.967,-1.20412,-1.20412,0 0|1:23:10,1,12:10:397:1,12:40,477:-36.2567,-35.9717,-68.3537,0,-29.3851,-29.0681 dDocent_Contig_14750 121 . G A 143.278 . AB=0.133333;ABP=20.5268;AC=0;AF=0;AN=6;AO=3;CIGAR=1X3M1X3M;DP=31;DPB=30.875;DPRA=0;EPP=9.52472;EPPR=33.4109;GTI=0;LEN=1;MEANALT=3.5;MQM=42.3333;MQMR=60;NS=3;NUMALT=3;ODDS=0;PAIRED=0;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=96;QR=469;RO=14;RPL=0;RPP=9.52472;RPPR=33.4109;RPR=3;RUN=1;SAF=0;SAP=9.52472;SAR=3;SRF=0;SRP=33.4109;SRR=14;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|0:11:9,1,0,0:9:304:1,0,0:27,0,0:0,-0.66861,-25.0209,-2.70927,-25.3219,-27.3868,-2.70927,-25.3219,-27.3868,-27.3868 0|0:5:0,0,1,4:0:0:0,1,4:0,35,134:-11.447,-11.447,-11.447,-10.3433,-10.3433,-10.0423,-1.29367,-1.29367,0,-0.0895523 0|0:15:5,2,3,3:5:165:2,3,3:69,106,82:-4.43146,-0.360112,-13.1373,-2.57297,-10.3685,-15.0263,0,-7.80757,-10.0114,-12.4701 dDocent_Contig_14751 34 . A G 93.5804 . AB=0.208333;ABP=20.744;AC=1;AF=0.166667;AN=6;AO=5;CIGAR=1X;DP=39;DPB=39;DPRA=3.2;EPP=13.8677;EPPR=76.8404;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=197;QR=1377;RO=34;RPL=0;RPP=13.8677;RPPR=76.8404;RPR=5;RUN=1;SAF=5;SAP=13.8677;SAR=0;SRF=34;SRP=76.8404;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:24:19,5:19:770:5:197:-10.8802,0,-62.3945 0/0:1:1,0:1:41:0:0:0,-0.30103,-4.09457 0/0:14:14,0:14:566:0:0:0,-4.21442,-51.282 dDocent_Contig_14752 19 . G T 502.005 . AB=0.5;ABP=3.0103;AC=3;AF=0.5;AN=6;AO=18;CIGAR=1X;DP=36;DPB=36;DPRA=0;EPP=42.0968;EPPR=42.0968;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=727;QR=715;RO=18;RPL=0;RPP=42.0968;RPPR=42.0968;RPR=18;RUN=1;SAF=18;SAP=42.0968;SAR=0;SRF=18;SRP=42.0968;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:17:7,10:7:283:10:408:-31.9629,0,-20.7255 0/1:11:5,6:5:201:6:237:-18.389,0,-15.1592 0/1:8:6,2:6:231:2:82:-5.37144,0,-18.745 dDocent_Contig_14753 24 . T C 907.49 . AB=0.596154;ABP=7.18621;AC=3;AF=0.5;AN=6;AO=31;CIGAR=1X;DP=52;DPB=52;DPRA=0;EPP=70.3259;EPPR=48.6112;GTI=0;LEN=1;MEANALT=1;MQM=59.2258;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=1234;QR=844;RO=21;RPL=0;RPP=70.3259;RPPR=48.6112;RPR=31;RUN=1;SAF=31;SAP=70.3259;SAR=0;SRF=21;SRP=48.6112;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:26:12,14:12:478:14:571:-43.9051,0,-35.5415 0/1:10:2,8:2:79:8:307:-24.7811,0,-4.48733 0/1:16:7,9:7:287:9:356:-27.5852,0,-21.3887 dDocent_Contig_14754 24 . T A 50.4428 . AB=0.5;ABP=3.0103;AC=1;AF=0.166667;AN=6;AO=3;CIGAR=1X1M1X;DP=24;DPB=24;DPRA=0.666667;EPP=9.52472;EPPR=48.6112;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=93;QR=811;RO=21;RPL=0;RPP=9.52472;RPPR=48.6112;RPR=3;RUN=1;SAF=3;SAP=9.52472;SAR=0;SRF=21;SRP=48.6112;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|0:12:12,0:12:462:0:0:0,-3.61236,-41.9262 0|0:6:6,0:6:231:0:0:0,-1.80618,-21.1561 0|1:6:3,3:3:118:3:93:-6.86816,0,-9.19671 dDocent_Contig_14755 45 . C T 62.8222 . AB=0.136364;ABP=53.5464;AC=2;AF=0.5;AN=4;AO=6;CIGAR=1X;DP=44;DPB=44;DPRA=0;EPP=16.0391;EPPR=85.5263;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=2;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=239;QR=1490;RO=38;RPL=0;RPP=16.0391;RPPR=85.5263;RPR=6;RUN=1;SAF=6;SAP=16.0391;SAR=0;SRF=38;SRP=85.5263;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:34:31,3:31:1214:3:118:-0.767487,0,-99.3033 ./.:.:.:.:.:.:.:. 0/1:10:7,3:7:276:3:121:-8.26969,0,-22.1978 dDocent_Contig_14756 9 . T C 168.892 . AB=0.444444;ABP=3.25157;AC=1;AF=0.166667;AN=6;AO=4;CIGAR=2X2M1X3M;DP=54;DPB=54;DPRA=0.290323;EPP=11.6962;EPPR=94.2121;GTI=0;LEN=1;MEANALT=3;MQM=34;MQMR=60;NS=3;NUMALT=3;ODDS=0;PAIRED=0;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=136;QR=1611;RO=42;RPL=0;RPP=11.6962;RPPR=94.2121;RPR=4;RUN=1;SAF=4;SAP=11.6962;SAR=0;SRF=42;SRP=94.2121;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|0:31:30,0,0,0:30:1154:0,0,0:0,0,0:0,-9.0309,-103.839,-9.0309,-103.839,-103.839,-9.0309,-103.839,-103.839,-103.839 1|0:9:2,4,2,1:2:78:4,2,1:136,80,41:-9.48232,-0.185014,-5.38737,-3.47429,0,-9.30108,-6.69035,-3.20444,-6.50864,-12.8135 0|0:14:10,0,0,4:10:379:0,0,4:0,0,163:-10.844,-13.8543,-44.9064,-13.8543,-44.9064,-44.9064,0,-31.451,-31.451,-30.2469 dDocent_Contig_14758 106 . N A 96.7539 . AB=0;ABP=0;AC=4;AF=1;AN=4;AO=3;CIGAR=2X;DP=3;DPB=3;DPRA=0;EPP=9.52472;EPPR=0;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=0;NS=2;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=97;QR=0;RO=0;RPL=0;RPP=9.52472;RPPR=0;RPR=3;RUN=1;SAF=0;SAP=9.52472;SAR=3;SRF=0;SRP=0;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 1|1:1:0,1:0:0:1:32:-3.19931,-0.30103,0 1|1:2:0,2:0:0:2:65:-6.17329,-0.60206,0 .:.:.:.:.:.:.:. dDocent_Contig_14759 11 . A C 3041.54 . AB=0.0944882;ABP=184.405;AC=0;AF=0;AN=6;AO=12;CIGAR=2X;DP=146;DPB=146;DPRA=0;EPP=29.068;EPPR=83.3548;GTI=0;LEN=1;MEANALT=2;MQM=60;MQMR=60;NS=3;NUMALT=2;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=480;QR=1502;RO=37;RPL=0;RPP=29.068;RPPR=83.3548;RPR=12;RUN=1;SAF=12;SAP=29.068;SAR=0;SRF=37;SRP=83.3548;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|0:86:22,11,53:22:892:11,53:439,2132:-169.078,-139.547,-209.796,0,-37.4106,-57.6088 0|0:19:2,0,17:2:82:0,17:0,667:-54.6416,-55.2436,-62.0136,0,-7.17762,-2.06011 0|0:41:13,1,27:13:528:1,27:41,1089:-85.8457,-86.3748,-129.621,0,-40.1585,-35.415 dDocent_Contig_14761 49 . C A 36.6423 . AB=0.666667;ABP=3.73412;AC=1;AF=0.166667;AN=6;AO=2;CIGAR=1X;DP=27;DPB=27;DPRA=0.25;EPP=7.35324;EPPR=57.2971;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=67;QR=1003;RO=25;RPL=0;RPP=7.35324;RPPR=57.2971;RPR=2;RUN=1;SAF=2;SAP=7.35324;SAR=0;SRF=25;SRP=57.2971;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:18:18,0:18:723:0:0:0,-5.41854,-65.3943 0/0:6:6,0:6:244:0:0:0,-1.80618,-22.3388 0/1:3:1,2:1:36:2:67:-5.45975,0,-2.69518 dDocent_Contig_14762 90 . G C 840.207 . AB=0.39;ABP=13.5202;AC=3;AF=0.5;AN=6;AO=39;CIGAR=1X;DP=100;DPB=100;DPRA=0;EPP=87.6977;EPPR=133.299;GTI=0;LEN=1;MEANALT=1.33333;MQM=59;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=0.974359;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=1324;QR=2045;RO=60;RPL=39;RPP=87.6977;RPPR=133.299;RPR=0;RUN=1;SAF=39;SAP=87.6977;SAR=0;SRF=60;SRP=133.299;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:78:47,30:47:1602:30:1020:-68.8506,0,-121.215 0/1:7:4,3:4:132:3:103:-7.50276,0,-10.0992 0/1:15:9,6:9:311:6:201:-13.1902,0,-23.8097 dDocent_Contig_14764 113 . C T 39.6602 . AB=0.230769;ABP=11.1951;AC=1;AF=0.166667;AN=6;AO=3;CIGAR=1X;DP=31;DPB=31;DPRA=1.44444;EPP=9.52472;EPPR=63.8115;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=104;QR=989;RO=28;RPL=0;RPP=9.52472;RPPR=63.8115;RPR=3;RUN=1;SAF=0;SAP=9.52472;SAR=3;SRF=0;SRP=63.8115;SRR=28;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:15:15,0:15:537:0:0:0,-4.51545,-48.6654 0/0:3:3,0:3:93:0:0:0,-0.90309,-8.67784 0/1:13:10,3:10:359:3:104:-5.7897,0,-28.7402 dDocent_Contig_14765 8 . A T 1195.83 . AB=0.159681;ABP=507.004;AC=3;AF=0.5;AN=6;AO=80;CIGAR=1X;DP=501;DPB=501;DPRA=0;EPP=176.728;EPPR=917.2;GTI=0;LEN=1;MEANALT=1;MQM=56.4625;MQMR=59.9311;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=0.992874;PAO=0;PQA=0;PQR=0;PRO=0;QA=3063;QR=16148;RO=421;RPL=0;RPP=176.728;RPPR=917.2;RPR=80;RUN=1;SAF=80;SAP=176.728;SAR=0;SRF=421;SRP=917.2;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:234:200,34:200:7688:34:1312:-47.5303,0,-621.281 0/1:88:65,23:65:2480:23:864:-51.4992,0,-196.91 0/1:179:156,23:156:5980:23:887:-26.076,0,-484.262 dDocent_Contig_14766 9 . T G 4052.76 . AB=0.606987;ABP=25.7776;AC=3;AF=0.5;AN=6;AO=139;CIGAR=1X2M;DP=229;DPB=229;DPRA=0;EPP=304.845;EPPR=185.414;GTI=0;LEN=1;MEANALT=2;MQM=58.7626;MQMR=60;NS=3;NUMALT=2;ODDS=0;PAIRED=0.913669;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=5321;QR=3302;RO=84;RPL=0;RPP=304.845;RPPR=185.414;RPR=139;RUN=1;SAF=139;SAP=304.845;SAR=0;SRF=84;SRP=185.414;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|1:130:43,0,86:43:1681:0,86:0,3298:-257.243,-270.188,-408.394,0,-138.215,-112.326 0|1:30:12,0,18:12:469:0,18:0,680:-52.3865,-55.9989,-94.561,0,-38.9471,-33.5285 0|1:69:29,4,35:29:1152:4,35:147,1343:-101.169,-97.8825,-191.531,0,-82.8976,-84.3762 dDocent_Contig_14768 16 . C T 74.2357 . AB=0.2;ABP=18.6449;AC=1;AF=0.166667;AN=6;AO=4;CIGAR=1X;DP=33;DPB=33;DPRA=3.07692;EPP=11.6962;EPPR=65.983;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=162;QR=1144;RO=29;RPL=0;RPP=11.6962;RPPR=65.983;RPR=4;RUN=1;SAF=4;SAP=11.6962;SAR=0;SRF=29;SRP=65.983;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:20:16,4:16:649:4:162:-8.94636,0,-52.7225 0/0:4:4,0:4:135:0:0:0,-1.20412,-12.4815 0/0:9:9,0:9:360:0:0:0,-2.70927,-32.7623 dDocent_Contig_14769 13 . T C 79.8312 . AB=0.131148;ABP=75.0961;AC=2;AF=0.333333;AN=6;AO=12;CIGAR=1X;DP=134;DPB=134;DPRA=0;EPP=29.068;EPPR=267.93;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=6.93889e-18;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=483;QR=4907;RO=122;RPL=0;RPP=29.068;RPPR=267.93;RPR=12;RUN=1;SAF=12;SAP=29.068;SAR=0;SRF=122;SRP=267.93;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:73:69,4:69:2806:4:160:0,-7.19176,-237.847 0/1:20:16,4:16:625:4:160:-8.76283,0,-50.5611 0/1:41:37,4:37:1476:4:163:-2.7162,0,-120.743 dDocent_Contig_14770 16 . C T 1391.9 . AB=0.0508475;ABP=106.394;AC=0;AF=0;AN=6;AO=3;CIGAR=1X2M1D3M1X3M1X6M1X;DP=179;DPB=172.053;DPRA=0;EPP=9.52472;EPPR=131.127;GTI=0;LEN=1;MEANALT=7;MQM=60;MQMR=60;NS=3;NUMALT=6;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=119;QR=2312;RO=59;RPL=0;RPP=9.52472;RPPR=131.127;RPR=3;RUN=1;SAF=3;SAP=9.52472;SAR=0;SRF=59;SRP=131.127;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|0:94:37,0,15,18,0,19,3:37:1439:0,15,18,0,19,3:0,583,687,0,720,87:-47.8934,-59.0315,-177.284,-11.1652,-129.42,-124.904,-2.67023,-120.924,-73.0602,-115.506,-59.0315,-177.284,-129.42,-120.924,-177.284,0,-118.253,-70.3896,-61.8943,-118.253,-112.534,-52.1144,-170.365,-122.502,-114.006,-170.365,-111.335,-169.462 0|0:26:2,0,1,11,3,5,4:2:80:0,1,11,3,5,4:0,40,408,114,186,147:-41.4033,-42.0053,-48.5976,-38.7091,-45.3015,-45.0004,-8.62657,-15.2201,-11.9235,-11.9088,-32.6562,-39.2488,-35.9525,-5.87145,-38.3457,-26.7825,-33.3752,-30.0789,0,-24.0263,-31.87,-29.9895,-36.582,-33.2858,-3.20701,-27.2333,-21.3602,-35.3779 0|0:59:20,3,3,20,3,1,8:20:793:3,3,20,3,1,8:119,119,750,113,39,261:-55.4158,-51.638,-116.023,-51.638,-107.128,-116.023,0,-55.4977,-55.4977,-59.2746,-52.1767,-107.667,-107.667,-56.0365,-116.561,-58.2299,-113.72,-113.72,-62.0891,-114.258,-123.216,-40.3792,-95.8661,-95.8661,-44.2408,-96.4044,-102.457,-103.255 dDocent_Contig_14771 28 . T G 1272.77 . AB=0.362637;ABP=17.9243;AC=3;AF=0.5;AN=6;AO=33;CIGAR=2X3M1X;DP=91;DPB=91;DPRA=0;EPP=74.6689;EPPR=65.983;GTI=0;LEN=1;MEANALT=2.33333;MQM=60;MQMR=60;NS=3;NUMALT=2;ODDS=0;PAIRED=0.878788;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=1265;QR=1127;RO=29;RPL=0;RPP=74.6689;RPPR=65.983;RPR=33;RUN=1;SAF=33;SAP=74.6689;SAR=0;SRF=29;SRP=65.983;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 1|0:60:14,24,21:14:541:24,21:918,830:-94.9898,-23.8805,-61.0898,-30.8954,0,-69.0114 0|1:18:13,5,0:13:506:5,0:192,0:-12.2306,0,-40.4696,-16.144,-41.9748,-57.7336 1|0:13:2,4,6:2:80:4,6:155,243:-25.5793,-13.4534,-18.8389,-6.13469,0,-10.9221 dDocent_Contig_14772 32 . C A 889.609 . AB=0.596154;ABP=7.18621;AC=3;AF=0.5;AN=6;AO=31;CIGAR=1M8D2X3M1X;DP=52;DPB=35.4667;DPRA=0;EPP=70.3259;EPPR=46.4397;GTI=0;LEN=1;MEANALT=1.33333;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=1208;QR=791;RO=20;RPL=0;RPP=70.3259;RPPR=46.4397;RPR=31;RUN=1;SAF=31;SAP=70.3259;SAR=0;SRF=20;SRP=46.4397;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|1:36:8,27:8:316:27:1056:-84.3941,0,-17.8624 0|1:8:5,3:5:200:3:112:-8.03705,0,-15.9719 0|1:8:7,1:7:275:1:40:-1.58744,0,-22.7104 dDocent_Contig_14775 112 . T C 129.067 . AB=0.470588;ABP=3.13803;AC=1;AF=0.25;AN=4;AO=9;CIGAR=1X;DP=29;DPB=29;DPRA=0;EPP=22.5536;EPPR=46.4397;GTI=0;LEN=1;MEANALT=1;MQM=30.1111;MQMR=60;NS=2;NUMALT=1;ODDS=0;PAIRED=0;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=310;QR=691;RO=20;RPL=0;RPP=22.5536;RPPR=46.4397;RPR=9;RUN=1;SAF=0;SAP=22.5536;SAR=9;SRF=0;SRP=46.4397;SRR=20;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:17:9,8:9:313:8:275:-14.6054,0,-23.3895 0/0:12:11,1:11:378:1:35:0,-1.06373,-31.8031 ./.:.:.:.:.:.:.:. dDocent_Contig_14776 18 . C T 296.573 . AB=0.625;ABP=5.18177;AC=1;AF=0.166667;AN=6;AO=10;CIGAR=1X3M1X;DP=38;DPB=38;DPRA=1.45455;EPP=24.725;EPPR=63.8115;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=396;QR=1115;RO=28;RPL=0;RPP=24.725;RPPR=63.8115;RPR=10;RUN=1;SAF=10;SAP=24.725;SAR=0;SRF=28;SRP=63.8115;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|1:16:6,10:6:243:10:396:-31.1801,0,-17.4317 0|0:4:4,0:4:158:0:0:0,-1.20412,-14.6003 0|0:18:18,0:18:714:0:0:0,-5.41854,-64.5888 dDocent_Contig_14777 32 . A G 62.9805 . AB=0.5;ABP=3.0103;AC=1;AF=0.166667;AN=6;AO=3;CIGAR=1X1M6I2M1X3M1X1M2X;DP=28;DPB=29.5;DPRA=0.545455;EPP=9.52472;EPPR=50.7827;GTI=0;LEN=1;MEANALT=2;MQM=45;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=0;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=109;QR=857;RO=22;RPL=3;RPP=9.52472;RPPR=50.7827;RPR=0;RUN=1;SAF=0;SAP=9.52472;SAR=3;SRF=22;SRP=50.7827;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|0:10:9,0:9:356:0:0:0,-2.70927,-32.0039 0|1:6:2,3:2:65:3:109:-8.12122,0,-4.29098 0|0:12:11,0:11:436:0:0:0,-3.31133,-39.1863 dDocent_Contig_14779 195 . A G 152.834 . AB=0.357143;ABP=5.49198;AC=3;AF=0.5;AN=6;AO=6;CIGAR=1X;DP=21;DPB=21;DPRA=1.25;EPP=16.0391;EPPR=35.5824;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=226;QR=549;RO=15;RPL=6;RPP=16.0391;RPPR=35.5824;RPR=0;RUN=1;SAF=0;SAP=16.0391;SAR=6;SRF=0;SRP=35.5824;SRR=15;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:14:9,5:9:343:5:195:-13.706,0,-27.0117 1/1:1:0,1:0:0:1:31:-3.09945,-0.30103,0 0/0:6:6,0:6:206:0:0:0,-1.80618,-18.8683 dDocent_Contig_14780 8 . A T 156.363 . AB=0.466667;ABP=3.15506;AC=1;AF=0.166667;AN=6;AO=7;CIGAR=1X;DP=29;DPB=29;DPRA=2.14286;EPP=18.2106;EPPR=50.7827;GTI=0;LEN=1;MEANALT=1;MQM=38.8571;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=0.571429;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=265;QR=832;RO=22;RPL=0;RPP=18.2106;RPPR=50.7827;RPR=7;RUN=1;SAF=7;SAP=18.2106;SAR=0;SRF=22;SRP=50.7827;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:15:8,7:8:296:7:265:-17.159,0,-22.4746 0/0:11:11,0:11:419:0:0:0,-3.31133,-38.0621 0/0:3:3,0:3:117:0:0:0,-0.90309,-10.9104 dDocent_Contig_14783 19 . A T 247.933 . AB=0.289474;ABP=17.6392;AC=1;AF=0.166667;AN=6;AO=13;CIGAR=2X;DP=81;DPB=81;DPRA=2.875;EPP=31.2394;EPPR=150.67;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=3.46945e-18;PAIRED=1;PAIREDR=0.955882;PAO=0;PQA=0;PQR=0;PRO=0;QA=499;QR=2682;RO=68;RPL=0;RPP=31.2394;RPPR=150.67;RPR=13;RUN=1;SAF=13;SAP=31.2394;SAR=0;SRF=68;SRP=150.67;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|0:31:29,2:29:1132:2:80:0,-1.74035,-94.5748 0|0:12:12,0:12:463:0:0:0,-3.61236,-42.0146 0|1:38:27,11:27:1087:11:419:-26.6172,0,-86.6789 dDocent_Contig_14784 34 . C G 45.3143 . AB=0.142857;ABP=34.0313;AC=1;AF=0.166667;AN=6;AO=4;CIGAR=1X;DP=78;DPB=78;DPRA=1.12;EPP=11.6962;EPPR=163.699;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=160;QR=2947;RO=74;RPL=0;RPP=11.6962;RPPR=163.699;RPR=4;RUN=1;SAF=4;SAP=11.6962;SAR=0;SRF=74;SRP=163.699;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:48:48,0:48:1920:0:0:0,-14.4494,-173.001 0/0:2:2,0:2:76:0:0:0,-0.60206,-7.21426 0/1:28:24,4:24:951:4:160:-6.35496,0,-77.4617 dDocent_Contig_14786 61 . A G 632.268 . AB=0.641026;ABP=9.74743;AC=3;AF=0.5;AN=6;AO=25;CIGAR=1X;DP=39;DPB=39;DPRA=0;EPP=57.2971;EPPR=33.4109;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=883;QR=489;RO=14;RPL=25;RPP=57.2971;RPPR=33.4109;RPR=0;RUN=1;SAF=25;SAP=57.2971;SAR=0;SRF=14;SRP=33.4109;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:21:6,15:6:213:15:533:-41.9815,0,-13.1943 0/1:5:2,3:2:70:3:105:-8.29082,0,-5.14197 0/1:13:6,7:6:206:7:245:-18.4773,0,-14.9629 dDocent_Contig_14788 10 . T C 6225.23 . AB=0.738676;ABP=145.019;AC=3;AF=0.5;AN=6;AO=212;CIGAR=1X;DP=287;DPB=287;DPRA=0;EPP=17.8009;EPPR=4.50892;GTI=0;LEN=1;MEANALT=2;MQM=59.6321;MQMR=57.0423;NS=3;NUMALT=1;ODDS=0;PAIRED=0.533019;PAIREDR=0.450704;PAO=0;PQA=0;PQR=0;PRO=0;QA=7931;QR=2590;RO=71;RPL=0;RPP=463.362;RPPR=157.185;RPR=212;RUN=1;SAF=125;SAP=17.8009;SAR=87;SRF=39;SRP=4.50892;SRR=32;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:167:38,128:38:1441:128:4846:-385.499,0,-79.542 0/1:46:11,35:11:381:35:1270:-100.731,0,-20.718 0/1:74:22,49:22:768:49:1815:-141.817,0,-47.2764 dDocent_Contig_14790 1 . N G 55.1043 . AB=0;ABP=0;AC=2;AF=1;AN=2;AO=2;CIGAR=1X;DP=2;DPB=2;DPRA=0;EPP=7.35324;EPPR=0;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=0;NS=1;NUMALT=1;ODDS=5.99146;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=58;QR=0;RO=0;RPL=0;RPP=7.35324;RPPR=0;RPR=2;RUN=1;SAF=0;SAP=7.35324;SAR=2;SRF=0;SRP=0;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 1/1:2:0,2:0:0:2:58:-5.50935,-0.60206,0 ./.:.:.:.:.:.:.:. ./.:.:.:.:.:.:.:. dDocent_Contig_14791 48 . T G 323.273 . AB=0.297872;ABP=19.6891;AC=3;AF=0.5;AN=6;AO=14;CIGAR=1X;DP=47;DPB=47;DPRA=0;EPP=33.4109;EPPR=44.1367;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=565;QR=1278;RO=33;RPL=0;RPP=33.4109;RPPR=44.1367;RPR=14;RUN=1;SAF=14;SAP=33.4109;SAR=0;SRF=33;SRP=74.6689;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:19:15,4:15:578:4:162:-9.24739,0,-46.639 0/1:12:10,2:10:392:2:80:-3.97922,0,-32.0256 0/1:16:8,8:8:308:8:323:-24.6221,0,-23.2629 dDocent_Contig_14792 15 . T C 1673.07 . AB=0.585106;ABP=8.9241;AC=3;AF=0.5;AN=6;AO=55;CIGAR=1X;DP=94;DPB=94;DPRA=0;EPP=122.441;EPPR=87.6977;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=2224;QR=1519;RO=39;RPL=0;RPP=122.441;RPPR=87.6977;RPR=55;RUN=1;SAF=55;SAP=122.441;SAR=0;SRF=39;SRP=87.6977;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:48:19,29:19:765:29:1178:-91.8447,0,-54.723 0/1:40:16,24:16:591:24:966:-75.1999,0,-41.476 0/1:6:4,2:4:163:2:80:-5.78539,0,-13.2522 dDocent_Contig_14793 11 . T C 236.351 . AB=0.322581;ABP=11.486;AC=2;AF=0.333333;AN=6;AO=10;CIGAR=1X;DP=68;DPB=68;DPRA=0.418919;EPP=24.725;EPPR=128.956;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=397;QR=2254;RO=58;RPL=0;RPP=24.725;RPPR=128.956;RPR=10;RUN=1;SAF=10;SAP=24.725;SAR=0;SRF=58;SRP=128.956;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:37:37,0:37:1440:0:0:0,-11.1381,-129.867 0/1:20:13,7:13:508:7:275:-19.0968,0,-40.0455 0/1:11:8,3:8:306:3:122:-8.06116,0,-24.5879 dDocent_Contig_14794 8 . A G 255.651 . AB=0.233333;ABP=40.0701;AC=0;AF=0;AN=6;AO=14;CIGAR=1X1M2X;DP=62;DPB=62;DPRA=0;EPP=33.4109;EPPR=76.8404;GTI=0;LEN=1;MEANALT=2.5;MQM=12;MQMR=60;NS=3;NUMALT=2;ODDS=6.93889e-18;PAIRED=0;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=545;QR=1295;RO=34;RPL=0;RPP=33.4109;RPPR=76.8404;RPR=14;RUN=1;SAF=14;SAP=33.4109;SAR=0;SRF=34;SRP=76.8404;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|0:30:20,4,5:20:761:4,5:158,193:-9.92821,-12.1174,-73.3266,0,-58.6796,-61.0641 0|0:2:1,0,1:1:37:0,1:0,41:-3.49251,-3.79354,-6.80072,0,-3.3968,-3.09577 0|0:30:13,10,7:13:497:10,7:387,262:-17.6512,-14.8396,-52.6148,0,-34.1721,-38.8269 dDocent_Contig_14795 28 . C T 59.3622 . AB=0.25;ABP=9.52472;AC=1;AF=0.166667;AN=6;AO=3;CIGAR=1X;DP=78;DPB=78;DPRA=0.363636;EPP=9.52472;EPPR=165.871;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=122;QR=2981;RO=75;RPL=0;RPP=9.52472;RPPR=165.871;RPR=3;RUN=1;SAF=3;SAP=9.52472;SAR=0;SRF=75;SRP=165.871;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:34:34,0:34:1357:0:0:0,-10.235,-122.383 0/1:12:9,3:9:348:3:122:-7.76013,0,-28.0581 0/0:32:32,0:32:1276:0:0:0,-9.63296,-115.102 dDocent_Contig_14796 29 . A G 178.134 . AB=0.192308;ABP=45.7716;AC=3;AF=0.5;AN=6;AO=10;CIGAR=1X;DP=52;DPB=52;DPRA=0;EPP=16.9077;EPPR=94.2121;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=0.8;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=400;QR=1663;RO=42;RPL=2;RPP=10.8276;RPPR=94.2121;RPR=8;RUN=1;SAF=9;SAP=16.9077;SAR=1;SRF=42;SRP=94.2121;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:24:21,3:21:825:3:121:-4.05548,0,-67.3364 0/1:15:9,6:9:351:6:238:-17.2773,0,-27.4329 0/1:13:12,1:12:487:1:41:-0.181177,0,-40.2677 dDocent_Contig_14798 120 . G A 101.045 . AB=0.333333;ABP=4.45795;AC=1;AF=0.166667;AN=6;AO=2;CIGAR=1X2M1X;DP=34;DPB=34;DPRA=0;EPP=7.35324;EPPR=59.4686;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=2;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=67;QR=905;RO=26;RPL=0;RPP=7.35324;RPPR=59.4686;RPR=2;RUN=1;SAF=0;SAP=7.35324;SAR=2;SRF=0;SRP=59.4686;SRR=26;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|0:12:9,0,3:9:305:0,3:0,103:-5.99724,-8.70651,-33.4324,0,-25.068,-24.1649 0|1:6:4,2,0:4:147:2,0:67,0:-4.55696,0,-11.7837,-5.76108,-12.3858,-17.8011 0|0:16:13,0,3:13:453:0,3:0,106:-5.07262,-8.98601,-45.8212,0,-37.1874,-36.2844 dDocent_Contig_14799 47 . G A 69.3932 . AB=0.2;ABP=18.6449;AC=1;AF=0.166667;AN=6;AO=4;CIGAR=1X;DP=40;DPB=40;DPRA=2;EPP=11.6962;EPPR=81.1833;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=160;QR=1361;RO=36;RPL=0;RPP=11.6962;RPPR=81.1833;RPR=4;RUN=1;SAF=4;SAP=11.6962;SAR=0;SRF=36;SRP=81.1833;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:6:6,0:6:232:0:0:0,-1.80618,-21.2469 0/0:14:14,0:14:515:0:0:0,-4.21442,-46.6772 0/1:20:16,4:16:614:4:160:-8.7632,0,-49.5772 dDocent_Contig_14800 52 . C A 747.766 . AB=0.260163;ABP=64.4647;AC=2;AF=0.333333;AN=6;AO=32;CIGAR=1X;DP=133;DPB=133;DPRA=6.15;EPP=72.4974;EPPR=222.329;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=6.93889e-18;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=1274;QR=4027;RO=101;RPL=32;RPP=72.4974;RPPR=222.329;RPR=0;RUN=1;SAF=32;SAP=72.4974;SAR=0;SRF=101;SRP=222.329;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:92:64,28:64:2563:28:1116:-73.0327,0,-203.103 0/0:10:10,0:10:379:0:0:0,-3.0103,-34.449 0/1:31:27,4:27:1085:4:158:-5.26673,0,-88.6044 dDocent_Contig_14801 42 . G A 34.5374 . AB=0.25;ABP=7.35324;AC=1;AF=0.166667;AN=6;AO=3;CIGAR=1X;DP=44;DPB=44;DPRA=0.794118;EPP=9.52472;EPPR=92.0407;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=1.73472e-18;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=113;QR=1646;RO=41;RPL=0;RPP=9.52472;RPPR=92.0407;RPR=3;RUN=1;SAF=3;SAP=9.52472;SAR=0;SRF=41;SRP=92.0407;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:17:17,0:17:677:0:0:0,-5.11751,-61.2579 0/1:8:6,2:6:240:2:81:-5.27749,0,-19.5672 0/0:19:18,1:18:729:1:32:0,-2.52026,-62.7356 dDocent_Contig_14802 187 . G T 65.5965 . AB=0.25;ABP=11.6962;AC=2;AF=0.333333;AN=6;AO=4;CIGAR=1X;DP=25;DPB=25;DPRA=0.888889;EPP=11.6962;EPPR=48.6112;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=157;QR=846;RO=21;RPL=4;RPP=11.6962;RPPR=48.6112;RPR=0;RUN=1;SAF=0;SAP=11.6962;SAR=4;SRF=0;SRP=48.6112;SRR=21;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:11:9,2:9:361:2:82:-4.46835,0,-29.5394 0/1:5:3,2:3:122:2:75:-5.61365,0,-9.86734 0/0:9:9,0:9:363:0:0:0,-2.70927,-33.0347 dDocent_Contig_14803 26 . G A 3536.97 . AB=0.358396;ABP=72.5029;AC=3;AF=0.5;AN=6;AO=143;CIGAR=1X;DP=399;DPB=399;DPRA=0;EPP=271.62;EPPR=391.466;GTI=0;LEN=1;MEANALT=1;MQM=47.8741;MQMR=39.0391;NS=3;NUMALT=1;ODDS=0;PAIRED=0;PAIREDR=0.0625;PAO=0;PQA=0;PQR=0;PRO=0;QA=5604;QR=9906;RO=256;RPL=0;RPP=313.531;RPPR=550.255;RPR=143;RUN=1;SAF=138;SAP=271.62;SAR=5;SRF=236;SRP=398.761;SRR=20;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:141:86,55:86:3355:55:2167:-143.929,0,-173.555 0/1:122:84,38:84:3207:38:1468:-87.421,0,-187.741 0/1:136:86,50:86:3344:50:1969:-127.871,0,-211.586 dDocent_Contig_14804 16 . T A 733.428 . AB=0.405797;ABP=8.32883;AC=3;AF=0.5;AN=6;AO=28;CIGAR=1X;DP=69;DPB=69;DPRA=0;EPP=63.8115;EPPR=92.0407;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=1095;QR=1599;RO=41;RPL=0;RPP=63.8115;RPPR=92.0407;RPR=28;RUN=1;SAF=28;SAP=63.8115;SAR=0;SRF=41;SRP=92.0407;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:26:21,5:21:825:5:200:-10.5526,0,-66.7392 0/1:30:10,20:10:377:20:775:-61.0386,0,-25.2456 0/1:13:10,3:10:397:3:120:-7.27451,0,-32.1723 dDocent_Contig_14805 13 . G T 64.8476 . AB=0.142857;ABP=49.5419;AC=2;AF=0.333333;AN=6;AO=7;CIGAR=1X;DP=64;DPB=64;DPRA=0;EPP=18.2106;EPPR=126.784;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=273;QR=2246;RO=57;RPL=0;RPP=18.2106;RPPR=126.784;RPR=7;RUN=1;SAF=7;SAP=18.2106;SAR=0;SRF=57;SRP=126.784;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:36:32,4:32:1267:4:163:-4.22135,0,-103.464 0/0:22:21,1:21:818:1:30:0,-3.62309,-70.9307 0/1:6:4,2:4:161:2:80:-5.78539,0,-13.0691 dDocent_Contig_14806 38 . C T 424.528 . AB=0.328125;ABP=19.4321;AC=3;AF=0.5;AN=6;AO=21;CIGAR=7M1X3M;DP=71;DPB=69.6364;DPRA=0;EPP=48.6112;EPPR=61.6401;GTI=0;LEN=1;MEANALT=3;MQM=60;MQMR=60;NS=3;NUMALT=3;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=377;QR=1001;RO=27;RPL=0;RPP=48.6112;RPPR=61.6401;RPR=21;RUN=1;SAF=21;SAP=48.6112;SAR=0;SRF=27;SRP=61.6401;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|1:33:16,11,6,0:16:590:11,6,0:304,107,0:-19.2922,0,-45.0782,-16.3196,-40.6178,-62.8192,-24.1086,-48.3895,-64.6254,-72.4213 1|0:7:1,2,0,4:1:37:2,0,4:52,0,138:-11.9076,-8.15948,-10.5894,-12.2087,-11.1915,-15.2433,-0.940664,0,-4.00428,-2.80016 0|1:31:10,2,15,3:10:374:2,15,3:43,270,90:-16.7381,-16.4784,-46.5669,0,-27.465,-26.2024,-12.5359,-39.9689,-23.5276,-42.3312 dDocent_Contig_14808 72 . A G 309.87 . AB=0.5;ABP=3.0103;AC=3;AF=0.5;AN=6;AO=17;CIGAR=1X;DP=34;DPB=34;DPRA=0;EPP=39.9253;EPPR=37.7539;GTI=0;LEN=1;MEANALT=1.33333;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=504;QR=535;RO=16;RPL=17;RPP=39.9253;RPPR=37.7539;RPR=0;RUN=1;SAF=17;SAP=39.9253;SAR=0;SRF=16;SRP=37.7539;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:21:10,11:10:331:11:319:-22.6732,0,-23.7907 0/1:7:5,2:5:170:2:66:-4.1611,0,-13.5276 0/1:6:1,4:1:34:4:119:-9.19295,0,-1.56884 dDocent_Contig_14809 48 . C G 233.588 . AB=0.222222;ABP=39.2015;AC=2;AF=0.5;AN=4;AO=12;CIGAR=1X;DP=54;DPB=54;DPRA=0;EPP=29.068;EPPR=94.2121;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=2;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=473;QR=1646;RO=42;RPL=0;RPP=29.068;RPPR=94.2121;RPR=12;RUN=1;SAF=12;SAP=29.068;SAR=0;SRF=42;SRP=94.2121;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:37:31,6:31:1227:6:245:-11.2914,0,-99.5683 ./.:.:.:.:.:.:.:. 0/1:17:11,6:11:419:6:228:-15.7664,0,-32.9443 dDocent_Contig_14810 15 . C A 73.3333 . AB=0.266667;ABP=10.1038;AC=2;AF=0.333333;AN=6;AO=4;CIGAR=1X;DP=21;DPB=21;DPRA=1.25;EPP=11.6962;EPPR=39.9253;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=0.5;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=162;QR=685;RO=17;RPL=0;RPP=11.6962;RPPR=39.9253;RPR=4;RUN=1;SAF=4;SAP=11.6962;SAR=0;SRF=17;SRP=39.9253;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:10:8,2:8:324:2:80:-4.58128,0,-26.5189 0/1:5:3,2:3:121:2:82:-6.27453,0,-9.77505 0/0:6:6,0:6:240:0:0:0,-1.80618,-21.9758 dDocent_Contig_14811 11 . G T 631.681 . AB=0.217105;ABP=108.67;AC=3;AF=0.5;AN=6;AO=33;CIGAR=1X;DP=152;DPB=152;DPRA=0;EPP=74.6689;EPPR=261.416;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=1260;QR=4606;RO=119;RPL=0;RPP=74.6689;RPPR=261.416;RPR=33;RUN=1;SAF=33;SAP=74.6689;SAR=0;SRF=119;SRP=261.416;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:97:74,23:74:2870:23:885:-50.7646,0,-229.262 0/1:6:3,3:3:112:3:118:-9.19654,0,-8.63955 0/1:49:42,7:42:1624:7:257:-8.72984,0,-131.67 dDocent_Contig_14812 103 . N C 301.073 . AB=0;ABP=0;AC=6;AF=1;AN=6;AO=17;CIGAR=6X1M1X;DP=17;DPB=17;DPRA=0;EPP=39.9253;EPPR=0;GTI=0;LEN=1;MEANALT=1;MQM=20.4118;MQMR=0;NS=3;NUMALT=1;ODDS=0;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=587;QR=0;RO=0;RPL=0;RPP=39.9253;RPPR=0;RPR=17;RUN=1;SAF=17;SAP=39.9253;SAR=0;SRF=0;SRP=0;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 1|1:9:0,9:0:0:9:314:-14.4972,-2.70927,0 1|1:4:0,4:0:0:4:137:-6.77665,-1.20412,0 1|1:4:0,4:0:0:4:136:-8.35614,-1.20412,0 dDocent_Contig_14813 139 . A C 1045.26 . AB=0.684211;ABP=19.8106;AC=2;AF=0.333333;AN=6;AO=39;CIGAR=1X;DP=60;DPB=60;DPRA=9.5;EPP=87.6977;EPPR=48.6112;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=1384;QR=741;RO=21;RPL=0;RPP=87.6977;RPPR=48.6112;RPR=39;RUN=1;SAF=0;SAP=87.6977;SAR=39;SRF=0;SRP=48.6112;SRR=21;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:46:9,37:9:319:37:1317:-104.985,0,-15.204 0/1:11:9,2:9:321:2:67:-3.05151,0,-25.9221 0/0:3:3,0:3:101:0:0:0,-0.90309,-9.42353 dDocent_Contig_14814 62 . T C 768.383 . AB=0.583333;ABP=5.9056;AC=3;AF=0.5;AN=6;AO=28;CIGAR=1X;DP=48;DPB=48;DPRA=0;EPP=63.8115;EPPR=46.4397;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=1064;QR=758;RO=20;RPL=28;RPP=63.8115;RPPR=46.4397;RPR=0;RUN=1;SAF=28;SAP=63.8115;SAR=0;SRF=20;SRP=46.4397;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:27:10,17:10:376:17:652:-50.888,0,-26.0633 0/1:13:5,8:5:190:8:301:-23.5275,0,-13.552 0/1:8:5,3:5:192:3:111:-7.94568,0,-15.2415 dDocent_Contig_14815 114 . A T 83.5851 . AB=0.285714;ABP=16.9698;AC=3;AF=0.5;AN=6;AO=10;CIGAR=1X;DP=35;DPB=35;DPRA=0;EPP=24.725;EPPR=57.2971;GTI=0;LEN=1;MEANALT=1;MQM=25.7;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=0;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=355;QR=907;RO=25;RPL=0;RPP=24.725;RPPR=57.2971;RPR=10;RUN=1;SAF=0;SAP=24.725;SAR=10;SRF=0;SRP=57.2971;SRR=25;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:21:17,4:17:621:4:145:-5.08482,0,-49.9029 0/1:3:2,1:2:70:1:36:-0.394847,0,-5.74403 0/1:11:6,5:6:216:5:174:-6.79287,0,-16.4787 dDocent_Contig_14817 8 . A T 184.399 . AB=0.3125;ABP=7.89611;AC=3;AF=0.5;AN=6;AO=7;CIGAR=1X;DP=24;DPB=24;DPRA=1.5;EPP=18.2106;EPPR=39.9253;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=267;QR=641;RO=17;RPL=0;RPP=18.2106;RPPR=39.9253;RPR=7;RUN=1;SAF=7;SAP=18.2106;SAR=0;SRF=17;SRP=39.9253;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 1/1:2:0,2:0:0:2:78:-7.40347,-0.60206,0 0/1:16:11,5:11:412:5:189:-12.5589,0,-32.6104 0/0:6:6,0:6:229:0:0:0,-1.80618,-20.9753 dDocent_Contig_14818 130 . T C 1247.58 . AB=0.738462;ABP=35.1147;AC=3;AF=0.5;AN=6;AO=48;CIGAR=1X;DP=65;DPB=65;DPRA=0;EPP=107.241;EPPR=39.9253;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=1654;QR=586;RO=17;RPL=0;RPP=107.241;RPPR=39.9253;RPR=48;RUN=1;SAF=0;SAP=107.241;SAR=48;SRF=0;SRP=39.9253;SRR=17;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:43:8,35:8:278:35:1198:-95.1795,0,-12.4137 0/1:6:3,3:3:98:3:105:-7.98998,0,-7.338 0/1:16:6,10:6:210:10:351:-27.1117,0,-14.426 dDocent_Contig_14819 8 . A C 31.2449 . AB=0.106195;ABP=155.225;AC=1;AF=0.166667;AN=6;AO=13;CIGAR=1X;DP=699;DPB=699;DPRA=1.2475;EPP=31.2394;EPPR=1451.4;GTI=0;LEN=1;MEANALT=2;MQM=48.6923;MQMR=47.0492;NS=3;NUMALT=1;ODDS=0;PAIRED=0.0769231;PAIREDR=0.321908;PAO=0;PQA=0;PQR=0;PRO=0;QA=500;QR=25415;RO=671;RPL=0;RPP=31.2394;RPPR=1460.07;RPR=13;RUN=1;SAF=13;SAP=31.2394;SAR=0;SRF=670;SRP=1451.4;SRR=1;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:386:377,1:377:14305:1:36:0,-110.976,-1127.03 0/1:113:101,12:101:3798:12:464:-4.94807,0,-247.898 0/0:200:193,0:193:7312:0:0:0,-58.0988,-586.91 dDocent_Contig_14820 79 . A G 148.65 . AB=0.6;ABP=3.87889;AC=1;AF=0.166667;AN=6;AO=6;CIGAR=1X;DP=51;DPB=51;DPRA=0.487805;EPP=16.0391;EPPR=100.727;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=8.67362e-19;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=215;QR=1655;RO=45;RPL=6;RPP=16.0391;RPPR=100.727;RPR=0;RUN=1;SAF=6;SAP=16.0391;SAR=0;SRF=45;SRP=100.727;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:33:33,0:33:1216:0:0:0,-9.93399,-109.746 0/0:8:8,0:8:293:0:0:0,-2.40824,-26.7214 0/1:10:4,6:4:146:6:215:-16.6889,0,-10.4874 dDocent_Contig_14821 67 . A G 230.417 . AB=0.3125;ABP=7.89611;AC=3;AF=0.5;AN=6;AO=8;CIGAR=1X;DP=60;DPB=60;DPRA=0.231707;EPP=20.3821;EPPR=115.927;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=318;QR=2031;RO=52;RPL=8;RPP=20.3821;RPPR=115.927;RPR=0;RUN=1;SAF=8;SAP=20.3821;SAR=0;SRF=52;SRP=115.927;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:41:41,0:41:1587:0:0:0,-12.3422,-143.068 0/1:16:11,5:11:444:5:201:-13.654,0,-35.4993 1/1:3:0,3:0:0:3:117:-10.9104,-0.90309,0 dDocent_Contig_14822 27 . C T 35.2792 . AB=0.1875;ABP=16.582;AC=1;AF=0.166667;AN=6;AO=3;CIGAR=1X;DP=30;DPB=30;DPRA=2.28571;EPP=9.52472;EPPR=61.6401;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=109;QR=1059;RO=27;RPL=0;RPP=9.52472;RPPR=61.6401;RPR=3;RUN=1;SAF=3;SAP=9.52472;SAR=0;SRF=27;SRP=61.6401;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:10:10,0:10:400:0:0:0,-3.0103,-36.3577 0/0:4:4,0:4:155:0:0:0,-1.20412,-14.3227 0/1:16:13,3:13:504:3:109:-5.35161,0,-40.8835 dDocent_Contig_14823 199 . C G 309.191 . AB=0.318182;ABP=15.6443;AC=3;AF=0.5;AN=6;AO=14;CIGAR=1X2M;DP=44;DPB=44;DPRA=0;EPP=33.4109;EPPR=55.1256;GTI=0;LEN=1;MEANALT=1.66667;MQM=60;MQMR=60;NS=3;NUMALT=3;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=522;QR=892;RO=24;RPL=14;RPP=33.4109;RPPR=55.1256;RPR=0;RUN=1;SAF=0;SAP=33.4109;SAR=14;SRF=0;SRP=55.1256;SRR=24;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|1:9:5,0,0,4:5:188:0,0,4:0,0,132:-9.49307,-10.9982,-26.4273,-10.9982,-26.4273,-26.4273,0,-15.7793,-15.7793,-14.5752 0|1:29:18,4,2,5:18:667:4,2,5:147,72,195:-10.6221,-4.02744,-57.388,-10.1696,-52.7185,-64.1337,0,-42.5586,-48.7027,-53.0714 0|1:6:1,0,0,5:1:37:0,0,5:0,0,195:-16.118,-16.419,-19.4428,-16.419,-19.4428,-19.4428,0,-3.3968,-3.3968,-1.89165 dDocent_Contig_14824 13 . T C 131.258 . AB=0.416667;ABP=3.73412;AC=1;AF=0.166667;AN=6;AO=5;CIGAR=1X;DP=64;DPB=64;DPRA=0.461538;EPP=13.8677;EPPR=131.127;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=202;QR=2356;RO=59;RPL=0;RPP=13.8677;RPPR=131.127;RPR=5;RUN=1;SAF=5;SAP=13.8677;SAR=0;SRF=59;SRP=131.127;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:25:25,0:25:1000:0:0:0,-7.52575,-90.298 0/0:27:27,0:27:1073:0:0:0,-8.12781,-96.8609 0/1:12:7,5:7:283:5:202:-14.9497,0,-22.2312 dDocent_Contig_14825 102 . N C 46.6311 . AB=0;ABP=0;AC=2;AF=1;AN=2;AO=2;CIGAR=5X4I1X;DP=2;DPB=3.33333;DPRA=0;EPP=7.35324;EPPR=0;GTI=0;LEN=1;MEANALT=1;MQM=25;MQMR=0;NS=1;NUMALT=1;ODDS=5.99146;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=69;QR=0;RO=0;RPL=0;RPP=7.35324;RPPR=0;RPR=2;RUN=1;SAF=2;SAP=7.35324;SAR=0;SRF=0;SRP=0;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL .:.:.:.:.:.:.:. .:.:.:.:.:.:.:. 1|1:2:0,2:0:0:2:69:-4.66202,-0.60206,0 dDocent_Contig_14826 26 . T C 107.838 . AB=0.175;ABP=39.7082;AC=2;AF=0.5;AN=4;AO=7;CIGAR=1X;DP=40;DPB=40;DPRA=0;EPP=18.2106;EPPR=74.6689;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=2;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=286;QR=1341;RO=33;RPL=0;RPP=18.2106;RPPR=74.6689;RPR=7;RUN=1;SAF=7;SAP=18.2106;SAR=0;SRF=33;SRP=74.6689;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:24:21,3:21:854:3:122:-4.14777,0,-69.9447 ./.:.:.:.:.:.:.:. 0/1:16:12,4:12:487:4:164:-10.3334,0,-39.365 dDocent_Contig_14829 6 . C A 49.8346 . AB=0.185185;ABP=26.2531;AC=2;AF=0.333333;AN=6;AO=5;CIGAR=3I3M1X1M1X;DP=40;DPB=42.5;DPRA=1.03846;EPP=13.8677;EPPR=79.0118;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=1.73472e-18;PAIRED=0;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=177;QR=1303;RO=35;RPL=0;RPP=13.8677;RPPR=79.0118;RPR=5;RUN=1;SAF=5;SAP=13.8677;SAR=0;SRF=35;SRP=79.0118;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|1:17:14,3:14:529:3:106:-4.77165,0,-42.8372 0|0:13:13,0:13:478:0:0:0,-3.91339,-43.3608 0|1:10:8,2:8:296:2:71:-3.73176,0,-23.9823 dDocent_Contig_14832 104 . N C 123.917 . AB=0;ABP=0;AC=2;AF=1;AN=2;AO=4;CIGAR=4X;DP=4;DPB=4;DPRA=0;EPP=11.6962;EPPR=0;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=0;NS=1;NUMALT=1;ODDS=7.37776;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=134;QR=0;RO=0;RPL=0;RPP=11.6962;RPPR=0;RPR=4;RUN=1;SAF=4;SAP=11.6962;SAR=0;SRF=0;SRP=0;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL .:.:.:.:.:.:.:. .:.:.:.:.:.:.:. 1|1:4:0,4:0:0:4:134:-12.3914,-1.20412,0 dDocent_Contig_14834 94 . A G 190.331 . AB=0.384615;ABP=6.01695;AC=1;AF=0.166667;AN=6;AO=11;CIGAR=1X;DP=44;DPB=44;DPRA=6.83333;EPP=26.8965;EPPR=74.6689;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=347;QR=1095;RO=33;RPL=11;RPP=26.8965;RPPR=74.6689;RPR=0;RUN=1;SAF=11;SAP=26.8965;SAR=0;SRF=33;SRP=74.6689;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:26:16,10:16:546:10:312:-20.5557,0,-41.637 0/0:3:3,0:3:100:0:0:0,-0.90309,-9.33037 0/0:15:14,1:14:449:1:35:0,-1.01682,-37.2187 dDocent_Contig_14835 19 . T C 431.031 . AB=0.390244;ABP=7.30028;AC=2;AF=0.333333;AN=6;AO=20;CIGAR=1X;DP=96;DPB=96;DPRA=0;EPP=46.4397;EPPR=168.042;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=811;QR=3034;RO=76;RPL=0;RPP=46.4397;RPPR=168.042;RPR=20;RUN=1;SAF=20;SAP=46.4397;SAR=0;SRF=76;SRP=168.042;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:55:51,4:51:2036:4:164:0,-1.40675,-168.274 0/1:21:13,8:13:520:8:324:-23.2076,0,-40.8261 0/1:20:12,8:12:478:8:323:-23.4184,0,-37.3483 dDocent_Contig_14836 27 . G A 4404.55 . AB=0.666667;ABP=16.0391;AC=4;AF=0.666667;AN=6;AO=139;CIGAR=1X1M;DP=168;DPB=168;DPRA=0;EPP=304.845;EPPR=52.9542;GTI=0;LEN=1;MEANALT=2.33333;MQM=60;MQMR=60;NS=3;NUMALT=2;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=5452;QR=870;RO=23;RPL=0;RPP=304.845;RPPR=52.9542;RPR=139;RUN=1;SAF=139;SAP=304.845;SAR=0;SRF=23;SRP=52.9542;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 1|1:114:9,1,103:9:346:1,103:40,4065:-334.336,-333.75,-361.851,-2.61991,-27.7098,0 0|1:20:10,2,8:10:383:2,8:80,324:-23.7101,-20.1312,-50.9483,0,-24.8242,-29.009 0|1:34:4,2,28:4:141:2,28:81,1063:-85.9179,-80.4412,-91.3126,0,-4.7454,-3.01314 dDocent_Contig_14837 178 . T C 36.5883 . AB=0.2;ABP=14.7363;AC=2;AF=0.333333;AN=6;AO=4;CIGAR=1X;DP=36;DPB=36;DPRA=0;EPP=11.6962;EPPR=72.4974;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=1.73472e-18;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=162;QR=1257;RO=32;RPL=4;RPP=11.6962;RPPR=72.4974;RPR=0;RUN=1;SAF=0;SAP=11.6962;SAR=4;SRF=0;SRP=72.4974;SRR=32;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:21:20,1:20:814:1:41:0,-2.22706,-69.4791 0/1:3:2,1:2:81:1:41:-3.19148,0,-6.78264 0/1:12:10,2:10:362:2:80:-3.97943,0,-29.2974 dDocent_Contig_14838 9 . G T 37.9652 . AB=0.142857;ABP=34.0313;AC=1;AF=0.166667;AN=6;AO=7;CIGAR=1X;DP=128;DPB=128;DPRA=2.54762;EPP=18.2106;EPPR=265.758;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=269;QR=4627;RO=121;RPL=0;RPP=18.2106;RPPR=265.758;RPR=7;RUN=1;SAF=7;SAP=18.2106;SAR=0;SRF=121;SRP=265.758;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:79:76,3:76:2923:3:117:0,-12.871,-252.326 0/1:28:24,4:24:901:4:152:-5.62036,0,-72.9779 0/0:21:21,0:21:803:0:0:0,-6.32163,-72.5945 dDocent_Contig_14840 13 . G A 235.479 . AB=0.2;ABP=53.8228;AC=2;AF=0.333333;AN=6;AO=17;CIGAR=1X;DP=142;DPB=142;DPRA=0;EPP=39.9253;EPPR=274.444;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=673;QR=4978;RO=125;RPL=0;RPP=39.9253;RPPR=274.444;RPR=17;RUN=1;SAF=17;SAP=39.9253;SAR=0;SRF=125;SRP=274.444;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:77:73,4:73:2919:4:163:0,-8.12088,-247.752 0/1:25:18,7:18:716:7:277:-17.7742,0,-57.2409 0/1:40:34,6:34:1343:6:233:-9.29656,0,-109.087 dDocent_Contig_14842 11 . A G 199.885 . AB=0.22449;ABP=35.3165;AC=2;AF=0.333333;AN=6;AO=13;CIGAR=1X;DP=94;DPB=94;DPRA=0;EPP=31.2394;EPPR=153.807;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=59.9136;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=0.716049;PAO=0;PQA=0;PQR=0;PRO=0;QA=495;QR=3076;RO=81;RPL=0;RPP=31.2394;RPPR=178.9;RPR=13;RUN=1;SAF=13;SAP=31.2394;SAR=0;SRF=78;SRP=153.807;SRR=3;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:45:43,2:43:1670:2:78:0,-6.14288,-143.148 0/1:20:16,4:16:597:4:156:-8.39614,0,-48.0423 0/1:29:22,7:22:809:7:261:-15.1152,0,-64.3899 dDocent_Contig_14843 93 . A G 32.0686 . AB=0.132075;ABP=65.3275;AC=2;AF=0.333333;AN=6;AO=7;CIGAR=1X;DP=142;DPB=142;DPRA=0.297753;EPP=18.2106;EPPR=296.159;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=244;QR=4774;RO=135;RPL=7;RPP=18.2106;RPPR=296.159;RPR=0;RUN=1;SAF=7;SAP=18.2106;SAR=0;SRF=135;SRP=296.159;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:89:89,0:89:3142:0:0:0,-26.7917,-283.005 0/1:17:14,3:14:494:3:108:-4.95766,0,-39.6758 0/1:36:32,4:32:1138:4:136:-1.73861,0,-91.8928 dDocent_Contig_14844 66 . G A 785.477 . AB=0.651163;ABP=11.5447;AC=3;AF=0.5;AN=6;AO=28;CIGAR=1X3M1X;DP=43;DPB=43;DPRA=0;EPP=63.8115;EPPR=35.5824;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=3.46945e-18;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=1066;QR=541;RO=15;RPL=28;RPP=63.8115;RPPR=35.5824;RPR=0;RUN=1;SAF=28;SAP=63.8115;SAR=0;SRF=15;SRP=35.5824;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|1:31:6,25:6:216:25:954:-76.8399,0,-10.4568 0|1:9:7,2:7:253:2:77:-4.59956,0,-20.4097 0|1:3:2,1:2:72:1:35:-2.59554,0,-5.93355 dDocent_Contig_14845 107 . N C 283.917 . AB=0;ABP=0;AC=4;AF=1;AN=4;AO=9;CIGAR=1X;DP=10;DPB=10;DPRA=0;EPP=22.5536;EPPR=0;GTI=0;LEN=1;MEANALT=1.5;MQM=59.1111;MQMR=0;NS=2;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=309;QR=0;RO=0;RPL=0;RPP=22.5536;RPPR=0;RPR=9;RUN=1;SAF=0;SAP=22.5536;SAR=9;SRF=0;SRP=0;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 1/1:8:0,7:0:0:7:243:-21.8222,-2.10721,0 1/1:2:0,2:0:0:2:66:-6.26793,-0.60206,0 ./.:.:.:.:.:.:.:. dDocent_Contig_14846 78 . C T 80.1389 . AB=0.217391;ABP=18.9659;AC=1;AF=0.166667;AN=6;AO=5;CIGAR=1X;DP=34;DPB=34;DPRA=4.18182;EPP=13.8677;EPPR=65.983;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=0.4;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=179;QR=1102;RO=29;RPL=5;RPP=13.8677;RPPR=65.983;RPR=0;RUN=1;SAF=5;SAP=13.8677;SAR=0;SRF=29;SRP=65.983;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:23:18,5:18:690:5:179:-9.5367,0,-55.5073 0/0:5:5,0:5:193:0:0:0,-1.50515,-17.7414 0/0:6:6,0:6:219:0:0:0,-1.80618,-20.0641 dDocent_Contig_14848 7 . A C 533.806 . AB=0.4375;ABP=4.6389;AC=3;AF=0.5;AN=6;AO=21;CIGAR=1X;DP=48;DPB=48;DPRA=0;EPP=48.6112;EPPR=61.6401;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=0.904762;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=803;QR=1026;RO=27;RPL=0;RPP=48.6112;RPPR=61.6401;RPR=21;RUN=1;SAF=21;SAP=48.6112;SAR=0;SRF=27;SRP=61.6401;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:23:8,15:8:301:15:576:-45.2572,0,-20.5215 0/1:4:2,2:2:78:2:76:-6.01055,0,-6.19935 0/1:21:17,4:17:647:4:151:-7.63572,0,-52.2424 dDocent_Contig_14850 7 . A T 278.432 . AB=0.265306;ABP=26.4533;AC=2;AF=0.333333;AN=6;AO=13;CIGAR=1X;DP=57;DPB=57;DPRA=3.0625;EPP=31.2394;EPPR=98.5551;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=504;QR=1699;RO=44;RPL=0;RPP=31.2394;RPPR=98.5551;RPR=13;RUN=1;SAF=13;SAP=31.2394;SAR=0;SRF=44;SRP=98.5551;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:34:23,11:23:889:11:426:-28.4597,0,-70.0932 0/1:15:13,2:13:500:2:78:-2.88802,0,-40.8327 0/0:8:8,0:8:310:0:0:0,-2.40824,-28.2636 dDocent_Contig_14851 40 . G A 112.006 . AB=0.263158;ABP=12.2676;AC=1;AF=0.166667;AN=6;AO=5;CIGAR=1X;DP=57;DPB=57;DPRA=1;EPP=13.8677;EPPR=115.927;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=204;QR=2075;RO=52;RPL=0;RPP=13.8677;RPPR=115.927;RPR=5;RUN=1;SAF=5;SAP=13.8677;SAR=0;SRF=52;SRP=115.927;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:14:14,0:14:562:0:0:0,-4.21442,-50.922 0/0:24:24,0:24:957:0:0:0,-7.22472,-86.4288 0/1:19:14,5:14:556:5:204:-13.0245,0,-44.66 dDocent_Contig_14852 93 . T C 91.481 . AB=0.26087;ABP=14.4341;AC=1;AF=0.166667;AN=6;AO=6;CIGAR=1X;DP=44;DPB=44;DPRA=2.19048;EPP=16.0391;EPPR=85.5263;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=192;QR=1193;RO=38;RPL=6;RPP=16.0391;RPPR=85.5263;RPR=0;RUN=1;SAF=6;SAP=16.0391;SAR=0;SRF=38;SRP=85.5263;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:23:17,6:17:533:6:192:-10.6706,0,-41.3489 0/0:2:2,0:2:59:0:0:0,-0.60206,-5.60384 0/0:19:19,0:19:601:0:0:0,-5.71957,-54.3937 dDocent_Contig_14853 15 . A G 39.9268 . AB=0.153846;ABP=30.0702;AC=3;AF=0.5;AN=6;AO=4;CIGAR=1X;DP=26;DPB=26;DPRA=0;EPP=11.6962;EPPR=50.7827;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=0;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=162;QR=886;RO=22;RPL=0;RPP=11.6962;RPPR=50.7827;RPR=4;RUN=1;SAF=4;SAP=11.6962;SAR=0;SRF=22;SRP=50.7827;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:12:11,1:11:441:1:41:-0.482207,0,-36.4312 0/1:9:7,2:7:283:2:81:-4.97646,0,-23.1341 0/1:5:4,1:4:162:1:40:-2.49053,0,-13.4618 dDocent_Contig_14854 22 . C T 44.5604 . AB=0.105882;ABP=117.69;AC=2;AF=0.333333;AN=6;AO=10;CIGAR=1X;DP=104;DPB=104;DPRA=0;EPP=24.725;EPPR=207.129;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=59.4043;NS=3;NUMALT=1;ODDS=0;PAIRED=0;PAIREDR=0.393617;PAO=0;PQA=0;PQR=0;PRO=0;QA=405;QR=3790;RO=94;RPL=0;RPP=24.725;RPPR=207.129;RPR=10;RUN=1;SAF=10;SAP=24.725;SAR=0;SRF=94;SRP=207.129;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:68:61,7:61:2480:7:283:-5.37313,0,-202.545 0/0:19:18,1:18:713:1:41:0,-1.625,-60.3808 0/1:17:15,2:15:597:2:81:-2.56822,0,-48.9481 dDocent_Contig_14855 25 . G A 198.027 . AB=0.444444;ABP=3.49285;AC=2;AF=0.333333;AN=6;AO=9;CIGAR=1X;DP=31;DPB=31;DPRA=0;EPP=22.5536;EPPR=50.7827;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=348;QR=886;RO=22;RPL=0;RPP=22.5536;RPPR=50.7827;RPR=9;RUN=1;SAF=9;SAP=22.5536;SAR=0;SRF=22;SRP=50.7827;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:13:12,1:12:488:1:37:0,-0.215561,-40.5735 0/1:7:4,3:4:161:3:119:-8.98797,0,-12.7681 0/1:11:6,5:6:237:5:192:-14.3367,0,-18.389 dDocent_Contig_14856 11 . T G 1810.54 . AB=0.287938;ABP=103.397;AC=2;AF=0.333333;AN=6;AO=75;CIGAR=1X;DP=274;DPB=274;DPRA=0;EPP=165.871;EPPR=435.133;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=1.38778e-17;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=2946;QR=7112;RO=199;RPL=0;RPP=165.871;RPPR=435.133;RPR=75;RUN=1;SAF=75;SAP=165.871;SAR=0;SRF=199;SRP=435.133;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:173:125,48:125:4468:48:1889:-118.131,0,-350.175 0/0:17:16,1:16:571:1:41:0,-1.02294,-47.6244 0/1:84:58,26:58:2073:26:1016:-66.4458,0,-161.535 dDocent_Contig_14857 9 . G C 202.934 . AB=0.446809;ABP=4.16534;AC=3;AF=0.5;AN=6;AO=21;CIGAR=1X;DP=47;DPB=47;DPRA=0;EPP=5.59539;EPPR=59.4686;GTI=0;LEN=1;MEANALT=1;MQM=27.5714;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=0;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=711;QR=1005;RO=26;RPL=0;RPP=48.6112;RPPR=59.4686;RPR=21;RUN=1;SAF=8;SAP=5.59539;SAR=13;SRF=26;SRP=59.4686;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:17:14,3:14:545:3:117:-5.79287,0,-44.2788 0/1:13:4,9:4:153:9:288:-10.3377,0,-10.2282 0/1:17:8,9:8:307:9:306:-9.68571,0,-22.8737 dDocent_Contig_14858 31 . T G 61.3259 . AB=0;ABP=0;AC=2;AF=0.333333;AN=6;AO=2;CIGAR=1M5I2M3D3M5I1X2M1X;DP=14;DPB=15.0769;DPRA=0.333333;EPP=3.0103;EPPR=29.068;GTI=0;LEN=1;MEANALT=1;MQM=32;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=0;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=80;QR=461;RO=12;RPL=0;RPP=7.35324;RPPR=29.068;RPR=2;RUN=1;SAF=1;SAP=3.0103;SAR=1;SRF=12;SRP=29.068;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|0:6:6,0:6:233:0:0:0,-1.80618,-21.3399 0|0:6:6,0:6:228:0:0:0,-1.80618,-20.8832 1|1:2:0,2:0:0:2:80:-5.95609,-0.60206,0 dDocent_Contig_14859 158 . T C 309.575 . AB=0.347826;ABP=12.2627;AC=4;AF=0.666667;AN=6;AO=17;CIGAR=1X2M;DP=47;DPB=47;DPRA=0;EPP=39.9253;EPPR=63.8115;GTI=0;LEN=1;MEANALT=1.33333;MQM=35.8824;MQMR=60;NS=3;NUMALT=2;ODDS=0;PAIRED=0;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=571;QR=1098;RO=28;RPL=17;RPP=39.9253;RPPR=63.8115;RPR=0;RUN=1;SAF=0;SAP=39.9253;SAR=17;SRF=0;SRP=63.8115;SRR=28;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|1:36:23,2,11:23:900:2,11:79,384:-21.5599,-21.9714,-95.4135,0,-67.4928,-70.6827 1|1:1:0,0,1:0:0:0,1:0,7:-0.699449,-0.699449,-0.699449,-0.30103,-0.30103,0 0|1:10:5,0,5:5:198:0,5:0,180:-12.1652,-13.6704,-29.9995,0,-16.6919,-15.1868 dDocent_Contig_14860 48 . A G 46.2355 . AB=0.25;ABP=9.52472;AC=2;AF=0.333333;AN=6;AO=3;CIGAR=1X;DP=32;DPB=32;DPRA=0.3;EPP=9.52472;EPPR=65.983;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=1.73472e-18;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=118;QR=1161;RO=29;RPL=0;RPP=9.52472;RPPR=65.983;RPR=3;RUN=1;SAF=3;SAP=9.52472;SAR=0;SRF=29;SRP=65.983;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:20:20,0:20:813:0:0:0,-6.0206,-73.485 0/1:3:1,2:1:41:2:77:-6.40511,0,-3.19148 0/1:9:8,1:8:307:1:41:-1.3853,0,-25.2787 dDocent_Contig_14861 10 . G A 1068.14 . AB=0.458824;ABP=4.26209;AC=3;AF=0.5;AN=6;AO=39;CIGAR=1X;DP=85;DPB=85;DPRA=0;EPP=87.6977;EPPR=102.898;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=1521;QR=1821;RO=46;RPL=0;RPP=87.6977;RPPR=102.898;RPR=39;RUN=1;SAF=39;SAP=87.6977;SAR=0;SRF=46;SRP=102.898;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:65:33,32:33:1297:32:1246:-92.8419,0,-97.4309 0/1:5:3,2:3:122:2:81:-6.18058,0,-9.86734 0/1:15:10,5:10:402:5:194:-13.3148,0,-32.0239 dDocent_Contig_14862 11 . T A 248.851 . AB=0.296296;ABP=12.7417;AC=2;AF=0.333334;AN=6;AO=8;CIGAR=2M1D1M1X3M;DP=65;DPB=58.5;DPRA=0.931034;EPP=20.3821;EPPR=79.0118;GTI=0;LEN=1;MEANALT=3;MQM=53;MQMR=60;NS=3;NUMALT=3;ODDS=0;PAIRED=0;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=306;QR=1295;RO=35;RPL=0;RPP=20.3821;RPPR=79.0118;RPR=8;RUN=1;SAF=8;SAP=20.3821;SAR=0;SRF=35;SRP=79.0118;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|0:29:25,0,4,0:25:937:0,4,0:0,52,0:0,-7.52575,-84.5069,-4.9929,-82.1127,-80.9086,-7.52575,-84.5069,-82.1127,-84.5069 0|1:9:1,0,8,0:1:35:0,8,0:0,105,0:-4.75283,-5.05386,-7.92911,0,-3.1976,-0.789359,-5.05386,-7.92911,-3.1976,-7.92911 0|1:27:9,3,7,8:9:323:3,7,8:114,91,306:-22.4357,-22.5617,-48.0399,-20.9715,-44.7654,-45.2256,0,-23.8736,-22.2767,-24.0503 dDocent_Contig_14864 172 . G T 440.431 . AB=0.393939;ABP=6.23461;AC=4;AF=0.666667;AN=6;AO=18;CIGAR=1X;DP=40;DPB=40;DPRA=0;EPP=42.0968;EPPR=50.7827;GTI=0;LEN=1;MEANALT=1;MQM=59.9444;MQMR=51.3182;NS=3;NUMALT=1;ODDS=3.46945e-18;PAIRED=1;PAIREDR=0.818182;PAO=0;PQA=0;PQR=0;PRO=0;QA=640;QR=830;RO=22;RPL=18;RPP=42.0968;RPPR=50.7827;RPR=0;RUN=1;SAF=0;SAP=42.0968;SAR=18;SRF=0;SRP=50.7827;SRR=22;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:17:8,9:8:318:9:351:-26.8303,0,-23.8699 1/1:7:2,5:2:40:5:192:-16.5841,-1.0415,0 0/1:16:12,4:12:472:4:97:-4.15031,0,-33.751 dDocent_Contig_14865 33 . G C 881.293 . AB=0.442857;ABP=4.99565;AC=2;AF=0.333333;AN=6;AO=33;CIGAR=1X;DP=95;DPB=95;DPRA=0;EPP=74.6689;EPPR=137.642;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=0.967742;PAO=0;PQA=0;PQR=0;PRO=0;QA=1321;QR=2466;RO=62;RPL=0;RPP=74.6689;RPPR=137.642;RPR=33;RUN=1;SAF=33;SAP=74.6689;SAR=0;SRF=62;SRP=137.642;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:56:32,24:32:1275:24:963:-70.1129,0,-98.162 0/0:25:23,2:23:917:2:76:0,-0.312213,-75.6209 0/1:14:7,7:7:274:7:282:-21.5385,0,-20.8079 dDocent_Contig_14866 8 . A G 34.8359 . AB=0.176471;ABP=18.4661;AC=2;AF=0.333333;AN=6;AO=3;CIGAR=1X;DP=21;DPB=21;DPRA=2.125;EPP=9.52472;EPPR=42.0968;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=0.777778;PAO=0;PQA=0;PQR=0;PRO=0;QA=117;QR=686;RO=18;RPL=0;RPP=9.52472;RPPR=42.0968;RPR=3;RUN=1;SAF=3;SAP=9.52472;SAR=0;SRF=18;SRP=42.0968;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:4:4,0:4:149:0:0:0,-1.20412,-13.7723 0/1:10:9,1:9:343:1:39:-0.886264,0,-28.217 0/1:7:5,2:5:194:2:78:-5.29626,0,-15.7256 dDocent_Contig_14867 18 . T C 241.738 . AB=0.289474;ABP=17.6392;AC=3;AF=0.5;AN=6;AO=11;CIGAR=1X;DP=38;DPB=38;DPRA=0;EPP=26.8965;EPPR=61.6401;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=444;QR=1062;RO=27;RPL=0;RPP=26.8965;RPPR=61.6401;RPR=11;RUN=1;SAF=11;SAP=26.8965;SAR=0;SRF=27;SRP=61.6401;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:13:10,3:10:401:3:120:-7.27392,0,-32.5347 0/1:3:1,2:1:40:2:82:-6.87659,0,-3.09259 0/1:22:16,6:16:621:6:242:-15.5347,0,-49.5979 dDocent_Contig_14869 7 . A T 305.392 . AB=0.162602;ABP=124.63;AC=1;AF=0.166667;AN=6;AO=22;CIGAR=1X;DP=202;DPB=202;DPRA=1.37037;EPP=50.7827;EPPR=393.875;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=842;QR=6837;RO=180;RPL=0;RPP=50.7827;RPPR=393.875;RPR=22;RUN=1;SAF=22;SAP=50.7827;SAR=0;SRF=180;SRP=393.875;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:123:103,20:103:3934:20:764:-32.061,0,-317.137 0/0:25:23,2:23:867:2:78:0,-0.122277,-70.9465 0/0:54:54,0:54:2036:0:0:0,-16.2556,-183.478 dDocent_Contig_14870 12 . A G 148.923 . AB=0.16;ABP=78.317;AC=2;AF=0.333333;AN=6;AO=13;CIGAR=1X2M1X;DP=126;DPB=126;DPRA=0;EPP=31.2394;EPPR=237.529;GTI=0;LEN=1;MEANALT=2;MQM=60;MQMR=60;NS=3;NUMALT=2;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=475;QR=4092;RO=108;RPL=0;RPP=31.2394;RPPR=237.529;RPR=13;RUN=1;SAF=13;SAP=31.2394;SAR=0;SRF=108;SRP=237.529;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|0:51:49,1,1:49:1877:1,1:37,38:0,-11.7284,-165.472,-11.629,-162.657,-165.382 0|1:30:24,6,0:24:915:6,0:218,0:-10.9382,0,-73.6349,-18.163,-75.4411,-93.2374 0|1:45:35,6,3:35:1300:6,3:220,91:-7.47693,0,-104.622,-10.7527,-99.1556,-116.232 dDocent_Contig_14871 17 . C T 270.813 . AB=0.107969;ABP=522.294;AC=3;AF=0.5;AN=6;AO=42;CIGAR=1X;DP=389;DPB=389;DPRA=0;EPP=94.2121;EPPR=756.511;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=0.97619;PAIREDR=0.778098;PAO=0;PQA=0;PQR=0;PRO=0;QA=1652;QR=13523;RO=347;RPL=0;RPP=94.2121;RPPR=756.511;RPR=42;RUN=1;SAF=42;SAP=94.2121;SAR=0;SRF=347;SRP=756.511;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:123:108,15:108:4292:15:585:-15.9598,0,-349.229 0/1:160:144,16:144:5578:16:629:-8.77789,0,-453.746 0/1:106:95,11:95:3653:11:438:-7.86653,0,-296.921 dDocent_Contig_14872 9 . G T 94.9096 . AB=0.363636;ABP=4.78696;AC=1;AF=0.166667;AN=6;AO=4;CIGAR=1X;DP=24;DPB=24;DPRA=1.69231;EPP=11.6962;EPPR=46.4397;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=155;QR=748;RO=20;RPL=0;RPP=11.6962;RPPR=46.4397;RPR=4;RUN=1;SAF=4;SAP=11.6962;SAR=0;SRF=20;SRP=46.4397;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:11:7,4:7:259:4:155:-11.0138,0,-20.3524 0/0:6:6,0:6:218:0:0:0,-1.80618,-19.9675 0/0:7:7,0:7:271:0:0:0,-2.10721,-24.7563 dDocent_Contig_14873 9 . G A 141.253 . AB=0.333333;ABP=7.35324;AC=1;AF=0.166667;AN=6;AO=6;CIGAR=1X;DP=35;DPB=35;DPRA=2.11765;EPP=16.0391;EPPR=65.983;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=230;QR=1118;RO=29;RPL=0;RPP=16.0391;RPPR=65.983;RPR=6;RUN=1;SAF=6;SAP=16.0391;SAR=0;SRF=29;SRP=65.983;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:18:12,6:12:467:6:230:-15.6478,0,-36.9638 0/0:2:2,0:2:78:0:0:0,-0.60206,-7.40347 0/0:15:15,0:15:573:0:0:0,-4.51545,-51.9107 dDocent_Contig_14874 48 . A G 249.799 . AB=0.529412;ABP=3.13803;AC=2;AF=0.333333;AN=6;AO=9;CIGAR=1X;DP=23;DPB=23;DPRA=1.41667;EPP=22.5536;EPPR=33.4109;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=365;QR=540;RO=14;RPL=0;RPP=22.5536;RPPR=33.4109;RPR=9;RUN=1;SAF=9;SAP=22.5536;SAR=0;SRF=14;SRP=33.4109;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:10:5,5:5:177:5:202:-15.5516,0,-13.2567 0/1:7:3,4:3:123:4:163:-12.9512,0,-9.35758 0/0:6:6,0:6:240:0:0:0,-1.80618,-21.9757 dDocent_Contig_14875 169 . C T 40.4911 . AB=0.153846;ABP=30.0702;AC=1;AF=0.166667;AN=6;AO=4;CIGAR=1X;DP=44;DPB=44;DPRA=2.88889;EPP=11.6962;EPPR=73.366;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=0;PAIREDR=0.95;PAO=0;PQA=0;PQR=0;PRO=0;QA=145;QR=1549;RO=40;RPL=4;RPP=11.6962;RPPR=89.8692;RPR=0;RUN=1;SAF=0;SAP=11.6962;SAR=4;SRF=2;SRP=73.366;SRR=38;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:26:22,4:22:873:4:145:-5.57159,0,-71.0505 0/0:16:16,0:16:595:0:0:0,-4.81648,-53.8664 0/0:2:2,0:2:81:0:0:0,-0.60206,-7.68573 dDocent_Contig_14876 54 . A G 560.919 . AB=0.060241;ABP=142.429;AC=0;AF=0;AN=6;AO=5;CIGAR=1X3M1I4M;DP=143;DPB=156.75;DPRA=0;EPP=13.8677;EPPR=72.4974;GTI=0;LEN=1;MEANALT=6;MQM=19.8;MQMR=55.6562;NS=3;NUMALT=4;ODDS=0;PAIRED=0;PAIREDR=0.75;PAO=0;PQA=0;PQR=0;PRO=0;QA=99;QR=1257;RO=32;RPL=5;RPP=13.8677;RPPR=72.4974;RPR=0;RUN=1;SAF=5;SAP=13.8677;SAR=0;SRF=32;SRP=72.4974;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|0:61:15,1,8,4,27:15:597:1,8,4,27:20,310,149,504:-25.3847,-28.6717,-76.9383,-4.41646,-51.7701,-50.5902,-17.9643,-65.3093,-41.066,-65.3334,0,-47.3219,-23.0887,-36.6229,-40.418 0|0:22:5,4,2,0,10:5:190:4,2,0,10:79,75,0,148:-6.13423,-2.80614,-17.244,-1.47373,-12.2917,-16.5139,-7.63938,-18.4481,-17.116,-23.2694,0,-10.8759,-9.49322,-15.6482,-12.6379 0|0:60:12,0,4,2,39:12:470:0,4,2,39:0,154,59,619:-30.0908,-33.7032,-71.7892,-21.0398,-59.1334,-57.9292,-29.5322,-67.6207,-54.9643,-67.0187,0,-38.085,-25.4344,-33.9278,-26.3448 dDocent_Contig_14877 23 . C T 44.693 . AB=0.5;ABP=3.0103;AC=1;AF=0.166667;AN=6;AO=2;CIGAR=1X;DP=15;DPB=15;DPRA=0.727273;EPP=7.35324;EPPR=31.2394;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=79;QR=527;RO=13;RPL=0;RPP=7.35324;RPPR=31.2394;RPR=2;RUN=1;SAF=2;SAP=7.35324;SAR=0;SRF=13;SRP=31.2394;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:5:5,0:5:201:0:0:0,-1.50515,-18.4705 0/1:4:2,2:2:81:2:79:-6.29312,0,-6.48161 0/0:6:6,0:6:245:0:0:0,-1.80618,-22.4295 dDocent_Contig_14878 18 . A G 495.147 . AB=0.372549;ABP=10.206;AC=2;AF=0.333333;AN=6;AO=19;CIGAR=2X;DP=51;DPB=51;DPRA=0;EPP=44.2683;EPPR=59.4686;GTI=0;LEN=1;MEANALT=1.66667;MQM=60;MQMR=60;NS=3;NUMALT=2;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=723;QR=1033;RO=26;RPL=0;RPP=44.2683;RPPR=59.4686;RPR=19;RUN=1;SAF=19;SAP=44.2683;SAR=0;SRF=26;SRP=59.4686;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|1:16:3,12,1:3:120:12,1:453,40:-36.2014,0,-6.27288,-33.8077,-6.59016,-43.3964 0|0:18:9,4,5:9:353:4,5:155,194:-13.2291,-3.20485,-31.03,0,-16.2975,-27.5246 0|1:17:14,3,0:14:560:3,0:115,0:-5.60697,0,-45.6256,-9.82139,-46.5286,-55.9641 dDocent_Contig_14879 13 . A G 43.4883 . AB=0.135135;ABP=45.7942;AC=1;AF=0.166667;AN=6;AO=5;CIGAR=1X;DP=88;DPB=88;DPRA=1.45098;EPP=13.8677;EPPR=183.243;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=1.73472e-18;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=185;QR=3003;RO=83;RPL=0;RPP=13.8677;RPPR=183.243;RPR=5;RUN=1;SAF=5;SAP=13.8677;SAR=0;SRF=83;SRP=183.243;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:37:32,5:32:1160:5:185:-5.87169,0,-93.5644 0/0:29:29,0:29:1066:0:0:0,-8.72987,-96.2475 0/0:22:22,0:22:777:0:0:0,-6.62266,-70.2429 dDocent_Contig_14880 10 . G A 1883.96 . AB=0.323529;ABP=39.7976;AC=2;AF=0.333333;AN=6;AO=44;CIGAR=1X3M2X2M1X;DP=156;DPB=156;DPRA=0;EPP=98.5551;EPPR=133.299;GTI=0;LEN=1;MEANALT=2.5;MQM=59.4545;MQMR=60;NS=3;NUMALT=2;ODDS=0;PAIRED=0.977273;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=1717;QR=2295;RO=60;RPL=0;RPP=98.5551;RPPR=133.299;RPR=44;RUN=1;SAF=44;SAP=98.5551;SAR=0;SRF=60;SRP=133.299;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 1|0:96:24,36,36:24:911:36,36:1400,1409:-148.784,-41.1534,-105.011,-40.1669,0,-104.025 0|0:20:11,0,9:11:419:0,9:0,358:-26.5627,-29.8741,-64.2329,0,-34.7486,-32.0394 0|1:40:25,8,6:25:965:8,6:317,232:-18.5714,0,-76.8402,-7.04553,-60.1929,-84.482 dDocent_Contig_14881 10 . G A 6953.14 . AB=0.872727;ABP=69.3784;AC=5;AF=0.833333;AN=6;AO=214;CIGAR=1M1D1X;DP=230;DPB=158.333;DPRA=0;EPP=467.705;EPPR=31.2394;GTI=0;LEN=1;MEANALT=2;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=8151;QR=500;RO=13;RPL=0;RPP=467.705;RPPR=31.2394;RPR=214;RUN=1;SAF=214;SAP=467.705;SAR=0;SRF=13;SRP=31.2394;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 1|1:166:6,157:6:227:157:5977:-517.127,-28.5722,0 1|1:9:0,9:0:0:9:341:-31.0449,-2.70927,0 0|1:55:7,48:7:273:48:1833:-148.665,0,-8.38136 dDocent_Contig_14882 9 . G T 125.615 . AB=0.190476;ABP=37.9607;AC=2;AF=0.333333;AN=6;AO=8;CIGAR=1X;DP=46;DPB=46;DPRA=5.25;EPP=20.3821;EPPR=74.9036;GTI=0;LEN=1;MEANALT=1.5;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=0.864865;PAO=0;PQA=0;PQR=0;PRO=0;QA=309;QR=1419;RO=37;RPL=0;RPP=20.3821;RPPR=83.3548;RPR=8;RUN=1;SAF=8;SAP=20.3821;SAR=0;SRF=36;SRP=74.9036;SRR=1;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:28:22,5:22:837:5:194:-9.57378,0,-67.4301 0/0:4:4,0:4:156:0:0:0,-1.20412,-14.4173 0/1:14:11,3:11:426:3:115:-6.51047,0,-34.4803 dDocent_Contig_14883 55 . G A 52.3412 . AB=0.12069;ABP=75.4926;AC=2;AF=0.333333;AN=6;AO=7;CIGAR=1X;DP=76;DPB=76;DPRA=1.61111;EPP=18.2106;EPPR=152.842;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=284;QR=2685;RO=69;RPL=7;RPP=18.2106;RPPR=152.842;RPR=0;RUN=1;SAF=7;SAP=18.2106;SAR=0;SRF=69;SRP=152.842;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:43:39,4:39:1477:4:161:-1.93098,0,-120.216 0/0:18:18,0:18:731:0:0:0,-5.41854,-66.1146 0/1:15:12,3:12:477:3:123:-6.94934,0,-38.7623 dDocent_Contig_14884 10 . G A 173.806 . AB=0.25;ABP=29.068;AC=3;AF=0.5;AN=6;AO=12;CIGAR=1X;DP=48;DPB=48;DPRA=0;EPP=29.068;EPPR=72.7387;GTI=0;LEN=1;MEANALT=1;MQM=41.1667;MQMR=57.3333;NS=3;NUMALT=1;ODDS=0;PAIRED=0.333333;PAIREDR=0.805556;PAO=0;PQA=0;PQR=0;PRO=0;QA=458;QR=1428;RO=36;RPL=0;RPP=29.068;RPPR=81.1833;RPR=12;RUN=1;SAF=12;SAP=29.068;SAR=0;SRF=35;SRP=72.7387;SRR=1;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:13:9,4:9:354:4:152:-9.3347,0,-26.3892 0/1:16:12,4:12:482:4:143:-6.53583,0,-38.9105 0/1:19:15,4:15:592:4:163:-7.03292,0,-47.6733 dDocent_Contig_14886 9 . G A 192.911 . AB=0.4;ABP=4.74748;AC=2;AF=0.333333;AN=6;AO=9;CIGAR=1X;DP=57;DPB=57;DPRA=0;EPP=22.5536;EPPR=107.241;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=351;QR=1822;RO=48;RPL=0;RPP=22.5536;RPPR=107.241;RPR=9;RUN=1;SAF=9;SAP=22.5536;SAR=0;SRF=48;SRP=107.241;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:37:36,1:36:1375:1:39:0,-7.24155,-120.137 0/1:11:8,3:8:294:3:117:-7.59905,0,-23.4953 0/1:9:4,5:4:153:5:195:-15.2149,0,-11.4323 dDocent_Contig_14888 20 . A C 43.2308 . AB=0.16;ABP=28.1125;AC=2;AF=0.333333;AN=6;AO=4;CIGAR=1X;DP=37;DPB=37;DPRA=1.04167;EPP=11.6962;EPPR=72.4974;GTI=0;LEN=1;MEANALT=1.5;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=164;QR=1271;RO=32;RPL=0;RPP=11.6962;RPPR=72.4974;RPR=4;RUN=1;SAF=4;SAP=11.6962;SAR=0;SRF=32;SRP=72.4974;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:7:5,1:5:192:1:41:-1.8938,0,-15.4609 0/1:18:15,3:15:591:3:123:-6.04625,0,-48.1091 0/0:12:12,0:12:488:0:0:0,-3.61236,-44.2713 dDocent_Contig_14889 28 . T C 149.591 . AB=0;ABP=0;AC=2;AF=0.333333;AN=6;AO=7;CIGAR=1X;DP=71;DPB=71;DPRA=1.86667;EPP=18.2106;EPPR=141.985;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=0.428571;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=283;QR=2555;RO=64;RPL=0;RPP=18.2106;RPPR=141.985;RPR=7;RUN=1;SAF=7;SAP=18.2106;SAR=0;SRF=64;SRP=141.985;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:52:49,3:49:1955:3:123:0,-4.18877,-164.677 1/1:4:0,4:0:0:4:160:-14.7829,-1.20412,0 0/0:15:15,0:15:600:0:0:0,-4.51545,-54.3388 dDocent_Contig_14890 15 . A G 306.784 . AB=0.1;ABP=58.6;AC=0;AF=0;AN=6;AO=4;CIGAR=2M1X10M;DP=55;DPB=49.2308;DPRA=0;EPP=11.6962;EPPR=79.0118;GTI=0;LEN=1;MEANALT=2.5;MQM=60;MQMR=60;NS=3;NUMALT=2;ODDS=0;PAIRED=1;PAIREDR=0.942857;PAO=0;PQA=0;PQR=0;PRO=0;QA=155;QR=1371;RO=35;RPL=0;RPP=11.6962;RPPR=79.0118;RPR=4;RUN=1;SAF=4;SAP=11.6962;SAR=0;SRF=35;SRP=79.0118;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|0:25:17,4,3:17:669:4,3:155,116:-7.61225,0,-53.8284,-3.2056,-45.5075,-57.3354 0|0:15:8,6,1:8:316:6,1:223,39:-15.8227,0,-24.2019,-15.0225,-22.8027,-40.7384 0|0:15:10,5,0:10:386:5,0:188,0:-12.7662,0,-30.5766,-15.7765,-32.0817,-47.4792 dDocent_Contig_14892 33 . C A 172.942 . AB=0.545455;ABP=3.20771;AC=1;AF=0.166667;AN=6;AO=6;CIGAR=1X;DP=52;DPB=52;DPRA=0.536585;EPP=16.0391;EPPR=102.898;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=8.67362e-19;PAIRED=0;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=245;QR=1821;RO=46;RPL=0;RPP=16.0391;RPPR=102.898;RPR=6;RUN=1;SAF=6;SAP=16.0391;SAR=0;SRF=46;SRP=102.898;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:30:30,0:30:1182:0:0:0,-9.0309,-106.655 0/1:11:5,6:5:191:6:245:-19.1181,0,-14.2437 0/0:11:11,0:11:448:0:0:0,-3.31133,-40.676 dDocent_Contig_14893 11 . C T 69.8848 . AB=0.150538;ABP=101.661;AC=3;AF=0.5;AN=6;AO=14;CIGAR=1X;DP=93;DPB=93;DPRA=0;EPP=33.4109;EPPR=174.557;GTI=0;LEN=1;MEANALT=1;MQM=36.2857;MQMR=57.4937;NS=3;NUMALT=1;ODDS=0;PAIRED=0;PAIREDR=0.708861;PAO=0;PQA=0;PQR=0;PRO=0;QA=482;QR=3142;RO=79;RPL=0;RPP=33.4109;RPPR=174.557;RPR=14;RUN=1;SAF=14;SAP=33.4109;SAR=0;SRF=79;SRP=174.557;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:45:39,6:39:1557:6:203:-2.65822,0,-126.191 0/1:17:14,3:14:562:3:106:-4.02887,0,-45.4289 0/1:31:26,5:26:1023:5:173:-5.7923,0,-82.424 dDocent_Contig_14894 15 . A G 9491.49 . AB=0.0218447;ABP=821.192;AC=0;AF=0;AN=6;AO=9;CIGAR=1X2M1X;DP=576;DPB=576.5;DPRA=0;EPP=22.5536;EPPR=443.819;GTI=0;LEN=1;MEANALT=6.5;MQM=60;MQMR=60;NS=3;NUMALT=3;ODDS=5.55112e-17;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=361;QR=7937;RO=203;RPL=0;RPP=22.5536;RPPR=443.819;RPR=9;RUN=1;SAF=9;SAP=22.5536;SAR=0;SRF=203;SRP=443.819;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|0:330:106,16,2,187:106:4165:16,2,187:627,82,7445:-581.086,-561.441,-899.178,-606.227,-897.226,-948.179,0,-291.001,-335.788,-286.263 0|0:82:33,3,7,38:33:1306:3,7,38:118,279,1526:-115.81,-116.038,-222.618,-102.77,-200.546,-208.145,0,-97.7769,-84.508,-96.0442 0|0:164:64,9,0,84:64:2466:9,0,84:354,0,3363:-257.776,-247.923,-447.674,-277.042,-450.383,-479.502,0,-173.338,-202.458,-177.172 dDocent_Contig_14895 153 . A C 288.407 . AB=0.44;ABP=3.79203;AC=2;AF=0.5;AN=4;AO=11;CIGAR=1X;DP=25;DPB=25;DPRA=0;EPP=26.8965;EPPR=33.4109;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=2;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=437;QR=549;RO=14;RPL=0;RPP=26.8965;RPPR=33.4109;RPR=11;RUN=1;SAF=0;SAP=26.8965;SAR=11;SRF=0;SRP=33.4109;SRR=14;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:14:6,8:6:238:8:324:-25.315,0,-17.5799 ./.:.:.:.:.:.:.:. 0/1:11:8,3:8:311:3:113:-7.22469,0,-25.0423 dDocent_Contig_14896 17 . A G 180.284 . AB=0.75;ABP=13.8677;AC=1;AF=0.166667;AN=6;AO=15;CIGAR=1X;DP=44;DPB=44;DPRA=1.66667;EPP=35.5824;EPPR=65.983;GTI=0;LEN=1;MEANALT=1;MQM=18.8667;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=0;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=580;QR=1169;RO=29;RPL=0;RPP=35.5824;RPPR=65.983;RPR=15;RUN=1;SAF=0;SAP=35.5824;SAR=15;SRF=29;SRP=65.983;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:20:5,15:5:205:15:580:-19.5512,0,-12.8144 0/0:8:8,0:8:313:0:0:0,-2.40824,-28.5291 0/0:16:16,0:16:651:0:0:0,-4.81648,-58.9231 dDocent_Contig_14898 11 . A T 87.321 . AB=0.263158;ABP=12.2676;AC=1;AF=0.166667;AN=6;AO=9;CIGAR=1X;DP=168;DPB=168;DPRA=1.77027;EPP=22.5536;EPPR=348.274;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=0;PAIREDR=0.993711;PAO=0;PQA=0;PQR=0;PRO=0;QA=313;QR=6163;RO=159;RPL=0;RPP=22.5536;RPPR=348.274;RPR=9;RUN=1;SAF=9;SAP=22.5536;SAR=0;SRF=159;SRP=348.274;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:112:108,4:108:4202:4:136:0,-21.14,-365.613 0/1:19:14,5:14:502:5:177:-10.556,0,-39.7799 0/0:37:37,0:37:1459:0:0:0,-11.1381,-131.568 dDocent_Contig_14899 72 . T A 230.326 . AB=0.354839;ABP=8.68415;AC=2;AF=0.333333;AN=6;AO=11;CIGAR=1X;DP=35;DPB=35;DPRA=3.875;EPP=26.8965;EPPR=55.1256;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=391;QR=851;RO=24;RPL=11;RPP=26.8965;RPPR=55.1256;RPR=0;RUN=1;SAF=11;SAP=26.8965;SAR=0;SRF=24;SRP=55.1256;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:16:12,4:12:447:4:146:-8.67993,0,-35.7566 0/0:4:4,0:4:127:0:0:0,-1.20412,-11.7428 0/1:15:8,7:8:277:7:245:-17.8754,0,-20.7505 dDocent_Contig_14900 9 . G A 99.2507 . AB=0.212121;ABP=26.7649;AC=3;AF=0.5;AN=6;AO=7;CIGAR=1X;DP=33;DPB=33;DPRA=0;EPP=18.2106;EPPR=43.4331;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=57.5385;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=0.846154;PAO=0;PQA=0;PQR=0;PRO=0;QA=269;QR=980;RO=26;RPL=0;RPP=18.2106;RPPR=59.4686;RPR=7;RUN=1;SAF=7;SAP=18.2106;SAR=0;SRF=24;SRP=43.4331;SRR=2;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:7:5,2:5:176:2:78:-5.29626,0,-14.0746 0/1:15:13,2:13:501:2:74:-2.50998,0,-40.4235 0/1:11:8,3:8:303:3:117:-7.59905,0,-24.3165 dDocent_Contig_14901 21 . A T 183.397 . AB=0.272727;ABP=17.8158;AC=2;AF=0.333333;AN=6;AO=9;CIGAR=1X;DP=51;DPB=51;DPRA=0.916667;EPP=22.5536;EPPR=94.2121;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=345;QR=1631;RO=42;RPL=0;RPP=22.5536;RPPR=94.2121;RPR=9;RUN=1;SAF=9;SAP=22.5536;SAR=0;SRF=42;SRP=94.2121;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:26:19,7:19:730:7:263:-16.1901,0,-58.1931 0/1:7:5,2:5:191:2:82:-5.67247,0,-15.4502 0/0:18:18,0:18:710:0:0:0,-5.41854,-64.2271 dDocent_Contig_14902 30 . G C 628.546 . AB=0.45098;ABP=4.07475;AC=3;AF=0.5;AN=6;AO=23;CIGAR=1X;DP=51;DPB=51;DPRA=0;EPP=52.9542;EPPR=63.8115;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=918;QR=1109;RO=28;RPL=0;RPP=52.9542;RPPR=63.8115;RPR=23;RUN=1;SAF=23;SAP=52.9542;SAR=0;SRF=28;SRP=63.8115;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:26:16,10:16:643:10:401:-28.622,0,-50.3775 0/1:9:6,3:6:233:3:123:-8.75552,0,-18.629 0/1:16:6,10:6:233:10:394:-30.9999,0,-16.5198 dDocent_Contig_14903 1 . N G 94.2414 . AB=0;ABP=0;AC=2;AF=1;AN=2;AO=3;CIGAR=1X3M1X;DP=3;DPB=3;DPRA=0;EPP=9.52472;EPPR=0;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=0;NS=1;NUMALT=1;ODDS=6.68461;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=101;QR=0;RO=0;RPL=0;RPP=9.52472;RPPR=0;RPR=3;RUN=1;SAF=0;SAP=9.52472;SAR=3;SRF=0;SRP=0;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL .:.:.:.:.:.:.:. .:.:.:.:.:.:.:. 1|1:3:0,3:0:0:3:101:-9.4236,-0.90309,0 dDocent_Contig_14904 52 . C T 415.194 . AB=0.215054;ABP=68.5981;AC=2;AF=0.333333;AN=6;AO=33;CIGAR=1X;DP=273;DPB=273;DPRA=0;EPP=74.6689;EPPR=521.992;GTI=0;LEN=1;MEANALT=1.33333;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=1321;QR=9282;RO=239;RPL=33;RPP=74.6689;RPPR=521.992;RPR=0;RUN=1;SAF=33;SAP=74.6689;SAR=0;SRF=239;SRP=521.992;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:180:166,13:166:6435:13:520:0,-7.05343,-531.789 0/1:19:17,2:17:677:2:76:-1.49397,0,-55.5387 0/1:74:56,18:56:2170:18:725:-43.3003,0,-173.214 dDocent_Contig_14905 78 . A T 505.694 . AB=0.323944;ABP=22.1254;AC=3;AF=0.5;AN=6;AO=23;CIGAR=1X;DP=71;DPB=71;DPRA=0;EPP=52.9542;EPPR=107.241;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=3.46945e-18;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=849;QR=1807;RO=48;RPL=23;RPP=52.9542;RPPR=107.241;RPR=0;RUN=1;SAF=23;SAP=52.9542;SAR=0;SRF=48;SRP=107.241;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:31:20,11:20:750:11:403:-27.2732,0,-58.4949 0/1:28:23,5:23:874:5:191:-9.12968,0,-70.5517 0/1:12:5,7:5:183:7:255:-19.6894,0,-13.2144 dDocent_Contig_14906 107 . N A 129.452 . AB=0;ABP=0;AC=2;AF=1;AN=2;AO=4;CIGAR=1X;DP=4;DPB=4;DPRA=0;EPP=11.6962;EPPR=0;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=0;NS=1;NUMALT=1;ODDS=7.37776;PAIRED=1;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=140;QR=0;RO=0;RPL=0;RPP=11.6962;RPPR=0;RPR=4;RUN=1;SAF=0;SAP=11.6962;SAR=4;SRF=0;SRP=0;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 1/1:4:0,4:0:0:4:140:-12.9449,-1.20412,0 ./.:.:.:.:.:.:.:. ./.:.:.:.:.:.:.:. dDocent_Contig_14907 10 . G T 191.545 . AB=0.307692;ABP=7.18621;AC=3;AF=0.5;AN=6;AO=8;CIGAR=1X;DP=32;DPB=32;DPRA=0;EPP=20.3821;EPPR=55.1256;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=301;QR=949;RO=24;RPL=0;RPP=20.3821;RPPR=55.1256;RPR=8;RUN=1;SAF=8;SAP=20.3821;SAR=0;SRF=24;SRP=55.1256;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:16:15,1:15:588:1:36:0,-1.2182,-49.6542 0/1:13:9,4:9:361:4:147:-9.67418,0,-28.9402 1/1:3:0,3:0:0:3:118:-11.0029,-0.90309,0 dDocent_Contig_14908 20 . G A 140.943 . AB=0.2;ABP=34.2795;AC=2;AF=0.333333;AN=6;AO=8;CIGAR=1X;DP=68;DPB=68;DPRA=0.714286;EPP=20.3821;EPPR=133.299;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=321;QR=2391;RO=60;RPL=0;RPP=20.3821;RPPR=133.299;RPR=8;RUN=1;SAF=8;SAP=20.3821;SAR=0;SRF=60;SRP=133.299;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:29:25,4:25:999:4:163:-6.32856,0,-81.4766 0/1:11:7,4:7:275:4:158:-11.2886,0,-21.8062 0/0:28:28,0:28:1117:0:0:0,-8.42884,-100.814 dDocent_Contig_14909 35 . C T 117.422 . AB=0.0714286;ABP=92.3509;AC=0;AF=0;AN=6;AO=5;CIGAR=1X2M1X2M1X;DP=111;DPB=111;DPRA=6.4375;EPP=13.8677;EPPR=213.643;GTI=0;LEN=1;MEANALT=2;MQM=60;MQMR=60;NS=3;NUMALT=2;ODDS=6.93889e-18;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=199;QR=3777;RO=97;RPL=0;RPP=13.8677;RPPR=213.643;RPR=5;RUN=1;SAF=5;SAP=13.8677;SAR=0;SRF=97;SRP=213.643;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|0:47:45,1,0:45:1763:1,0:40,0:0,-10.2513,-154.91,-13.5463,-155.211,-158.506 0|0:8:8,0,0:8:306:0,0:0,0:0,-2.40824,-27.9001,-2.40824,-27.9001,-27.9001 0|0:56:44,4,8:44:1708:4,8:159,325:-13.5661,-13.7232,-152.835,0,-127.231,-137.914 dDocent_Contig_14911 10 . G T 180.992 . AB=0;ABP=0;AC=2;AF=0.333333;AN=6;AO=5;CIGAR=1X;DP=16;DPB=16;DPRA=0.909091;EPP=13.8677;EPPR=26.8965;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=195;QR=438;RO=11;RPL=0;RPP=13.8677;RPPR=26.8965;RPR=5;RUN=1;SAF=5;SAP=13.8677;SAR=0;SRF=11;SRP=26.8965;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:5:5,0:5:200:0:0:0,-1.50515,-18.379 0/0:6:6,0:6:238:0:0:0,-1.80618,-21.7936 1/1:5:0,5:0:0:5:195:-17.923,-1.50515,0 dDocent_Contig_14912 54 . A G 420.896 . AB=0.125;ABP=32.3252;AC=1;AF=0.166667;AN=6;AO=3;CIGAR=3X2M1X;DP=36;DPB=36;DPRA=0;EPP=9.52472;EPPR=33.4109;GTI=0;LEN=1;MEANALT=2.5;MQM=50;MQMR=60;NS=3;NUMALT=3;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=106;QR=506;RO=14;RPL=3;RPP=9.52472;RPPR=33.4109;RPR=0;RUN=1;SAF=3;SAP=9.52472;SAR=0;SRF=14;SRP=33.4109;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|0:19:8,0,2,9:8:292:0,2,9:0,72,335:-25.0275,-27.4357,-51.2906,-21.6556,-45.5089,-44.9068,0,-23.8647,-18.0835,-21.1554 1|0:5:0,3,1,1:0:0:3,1,1:90,34,37:-10.2037,-3.04196,-2.13887,-7.44117,-0.298918,-7.14014,-7.16467,0,-4.39668,-6.86364 0|0:12:6,0,0,5:6:214:0,0,5:0,0,173:-12.2322,-14.0384,-31.4869,-14.0384,-31.4869,-31.4869,0,-17.4338,-17.4338,-15.9286 dDocent_Contig_14913 18 . T C 78.7479 . AB=0.227273;ABP=17.2236;AC=3;AF=0.5;AN=6;AO=5;CIGAR=1X;DP=22;DPB=22;DPRA=0;EPP=13.8677;EPPR=39.9253;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=0.6;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=204;QR=692;RO=17;RPL=0;RPP=13.8677;RPPR=39.9253;RPR=5;RUN=1;SAF=5;SAP=13.8677;SAR=0;SRF=17;SRP=39.9253;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:8:6,2:6:244:2:82:-5.37144,0,-19.9306 0/1:8:7,1:7:286:1:40:-1.58744,0,-23.7066 0/1:6:4,2:4:162:2:82:-5.9735,0,-13.1608 dDocent_Contig_14914 170 . A G 76.737 . AB=0;ABP=0;AC=2;AF=0.333333;AN=6;AO=2;CIGAR=1X;DP=24;DPB=24;DPRA=0.181818;EPP=7.35324;EPPR=50.7827;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=1.69407e-21;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=79;QR=851;RO=22;RPL=2;RPP=7.35324;RPPR=50.7827;RPR=0;RUN=1;SAF=0;SAP=7.35324;SAR=2;SRF=0;SRP=50.7827;SRR=22;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:12:12,0:12:476:0:0:0,-3.61236,-43.1869 0/0:10:10,0:10:375:0:0:0,-3.0103,-34.0893 1/1:2:0,2:0:0:2:79:-7.49724,-0.60206,0 dDocent_Contig_14915 35 . C T 112.188 . AB=0.571429;ABP=3.32051;AC=1;AF=0.166667;AN=6;AO=4;CIGAR=1X;DP=36;DPB=36;DPRA=0.482759;EPP=3.0103;EPPR=56.2114;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=0;PAIREDR=0.875;PAO=0;PQA=0;PQR=0;PRO=0;QA=164;QR=1283;RO=32;RPL=0;RPP=11.6962;RPPR=72.4974;RPR=4;RUN=1;SAF=2;SAP=3.0103;SAR=2;SRF=30;SRP=56.2114;SRR=2;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:17:17,0:17:681:0:0:0,-5.11751,-61.6193 0/1:7:3,4:3:123:4:164:-13.0427,0,-9.35758 0/0:12:12,0:12:479:0:0:0,-3.61236,-43.4606 dDocent_Contig_14916 22 . G A 65.204 . AB=0.181818;ABP=22.3561;AC=1;AF=0.166667;AN=6;AO=5;CIGAR=1X;DP=56;DPB=56;DPRA=3.5;EPP=13.8677;EPPR=113.755;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=198;QR=2051;RO=51;RPL=0;RPP=13.8677;RPPR=113.755;RPR=5;RUN=1;SAF=5;SAP=13.8677;SAR=0;SRF=51;SRP=113.755;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:27:26,1:26:1047:1:36:0,-4.52953,-90.9219 0/0:7:7,0:7:286:0:0:0,-2.10721,-26.1148 0/1:22:18,4:18:718:4:162:-8.3443,0,-58.318 dDocent_Contig_14917 56 . A G 32.9217 . AB=0.214286;ABP=12.937;AC=1;AF=0.166667;AN=6;AO=3;CIGAR=1X;DP=51;DPB=51;DPRA=0.756757;EPP=9.52472;EPPR=107.241;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=100;QR=1797;RO=48;RPL=3;RPP=9.52472;RPPR=107.241;RPR=0;RUN=1;SAF=3;SAP=9.52472;SAR=0;SRF=48;SRP=107.241;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:34:34,0:34:1273:0:0:0,-10.235,-114.862 0/0:3:3,0:3:122:0:0:0,-0.90309,-11.3725 0/1:14:11,3:11:402:3:100:-5.11568,0,-32.3107 dDocent_Contig_14919 73 . C G 223.413 . AB=0.309524;ABP=16.2459;AC=3;AF=0.5;AN=6;AO=13;CIGAR=1X;DP=42;DPB=42;DPRA=0;EPP=31.2394;EPPR=65.983;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=434;QR=987;RO=29;RPL=13;RPP=31.2394;RPPR=65.983;RPR=0;RUN=1;SAF=13;SAP=31.2394;SAR=0;SRF=29;SRP=65.983;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:15:11,4:11:367:4:134:-7.87536,0,-28.8349 0/1:6:1,5:1:34:5:170:-13.8286,0,-1.59273 0/1:21:17,4:17:586:4:130:-5.69967,0,-46.7443 dDocent_Contig_14920 14 . C T 274.431 . AB=0.366667;ABP=7.64277;AC=2;AF=0.333333;AN=6;AO=13;CIGAR=1X;DP=62;DPB=62;DPRA=0;EPP=31.2394;EPPR=109.412;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=517;QR=1954;RO=49;RPL=0;RPP=31.2394;RPPR=109.412;RPR=13;RUN=1;SAF=13;SAP=31.2394;SAR=0;SRF=49;SRP=109.412;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:32:30,2:30:1202:2:82:0,-1.85328,-100.665 0/1:6:5,1:5:193:1:39:-2.09038,0,-15.9334 0/1:24:14,10:14:559:10:396:-28.7715,0,-43.425 dDocent_Contig_14921 16 . G A 37.6634 . AB=0.190476;ABP=20.4855;AC=4;AF=0.666667;AN=6;AO=4;CIGAR=5M1X3M10I2M;DP=24;DPB=22.5455;DPRA=3.5;EPP=11.6962;EPPR=31.2394;GTI=0;LEN=1;MEANALT=1.5;MQM=33;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=128;QR=508;RO=13;RPL=0;RPP=11.6962;RPPR=31.2394;RPR=4;RUN=1;SAF=4;SAP=11.6962;SAR=0;SRF=13;SRP=31.2394;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|1:10:7,3:7:277:3:95:-5.15895,0,-22.2902 1|1:3:0,0:0:0:0:0:0,0,0 0|1:11:6,1:6:231:1:33:-0.587263,0,-18.7011 dDocent_Contig_14922 107 . N T 179.488 . AB=0;ABP=0;AC=4;AF=1;AN=4;AO=8;CIGAR=1X;DP=8;DPB=8;DPRA=0;EPP=20.3821;EPPR=0;GTI=0;LEN=1;MEANALT=1;MQM=28.5;MQMR=0;NS=2;NUMALT=1;ODDS=0;PAIRED=0.75;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=276;QR=0;RO=0;RPL=0;RPP=20.3821;RPPR=0;RPR=8;RUN=1;SAF=0;SAP=20.3821;SAR=8;SRF=0;SRP=0;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 1/1:7:0,7:0:0:7:241:-16.144,-2.10721,0 1/1:1:0,1:0:0:1:35:-1.49581,-0.30103,0 ./.:.:.:.:.:.:.:. dDocent_Contig_14925 15 . G A 272.491 . AB=0.229508;ABP=41.7764;AC=2;AF=0.333333;AN=6;AO=14;CIGAR=1X;DP=64;DPB=64;DPRA=10.1667;EPP=33.4109;EPPR=111.584;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=538;QR=1999;RO=50;RPL=0;RPP=33.4109;RPPR=111.584;RPR=14;RUN=1;SAF=14;SAP=33.4109;SAR=0;SRF=50;SRP=111.584;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:42:31,11:31:1232:11:425:-25.9531,0,-98.5088 0/0:3:3,0:3:118:0:0:0,-0.90309,-11.0016 0/1:19:16,3:16:649:3:113:-4.81846,0,-53.0236 dDocent_Contig_14926 10 . C T 292.398 . AB=0.40625;ABP=5.45321;AC=3;AF=0.5;AN=6;AO=13;CIGAR=1X;DP=32;DPB=32;DPRA=0;EPP=31.2394;EPPR=44.2683;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=0.846154;PAIREDR=0.894737;PAO=0;PQA=0;PQR=0;PRO=0;QA=480;QR=775;RO=19;RPL=0;RPP=31.2394;RPPR=44.2683;RPR=13;RUN=1;SAF=13;SAP=31.2394;SAR=0;SRF=19;SRP=44.2683;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:20:11,9:11:448:9:332:-24.2072,0,-34.6554 0/1:6:5,1:5:204:1:39:-2.09038,0,-16.9379 0/1:6:3,3:3:123:3:109:-8.36111,0,-9.65861 dDocent_Contig_14929 12 . C T 30.2964 . AB=0.176471;ABP=18.4661;AC=2;AF=0.333333;AN=6;AO=3;CIGAR=1X;DP=24;DPB=24;DPRA=1.21429;EPP=9.52472;EPPR=48.6112;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=120;QR=848;RO=21;RPL=0;RPP=9.52472;RPPR=48.6112;RPR=3;RUN=1;SAF=3;SAP=9.52472;SAR=0;SRF=21;SRP=48.6112;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:8:7,1:7:280:1:41:-1.68633,0,-23.1624 0/0:7:7,0:7:285:0:0:0,-2.10721,-26.0244 0/1:9:7,2:7:283:2:79:-4.78797,0,-23.1341 dDocent_Contig_14930 14 . A C 2418.6 . AB=0.138462;ABP=76.807;AC=0;AF=0;AN=6;AO=10;CIGAR=1X2M2X;DP=103;DPB=103;DPRA=0;EPP=24.725;EPPR=37.7539;GTI=0;LEN=1;MEANALT=2.33333;MQM=60;MQMR=60;NS=3;NUMALT=2;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=392;QR=611;RO=16;RPL=0;RPP=24.725;RPPR=37.7539;RPR=10;RUN=1;SAF=10;SAP=24.725;SAR=0;SRF=16;SRP=37.7539;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|0:32:7,7,18:7:278:7,18:275,728:-57.9237,-37.4158,-58.1923,0,-0.271608,-17.4693 0|0:38:3,1,33:3:112:1,33:40,1296:-106.448,-104.056,-112.922,-0.781404,-6.63493,0 0|0:33:6,2,25:6:221:2,25:77,1004:-80.9389,-76.4248,-93.882,0,-11.7275,-10.5275 dDocent_Contig_14931 34 . A G 297.265 . AB=0.222222;ABP=51.2652;AC=3;AF=0.5;AN=6;AO=16;CIGAR=1X;DP=72;DPB=72;DPRA=0;EPP=37.7539;EPPR=124.613;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=620;QR=2210;RO=56;RPL=0;RPP=37.7539;RPPR=124.613;RPR=16;RUN=1;SAF=16;SAP=37.7539;SAR=0;SRF=56;SRP=124.613;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:43:38,5:38:1498:5:195:-4.97974,0,-122.126 0/1:3:1,2:1:38:2:75:-6.21701,0,-2.89418 0/1:26:17,9:17:674:9:350:-24.0344,0,-53.1642 dDocent_Contig_14933 18 . G A 212.274 . AB=0.444444;ABP=3.49285;AC=1;AF=0.166667;AN=6;AO=8;CIGAR=1X;DP=49;DPB=49;DPRA=1.16129;EPP=20.3821;EPPR=92.0407;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=0.95122;PAO=0;PQA=0;PQR=0;PRO=0;QA=309;QR=1587;RO=41;RPL=0;RPP=20.3821;RPPR=92.0407;RPR=8;RUN=1;SAF=8;SAP=20.3821;SAR=0;SRF=41;SRP=92.0407;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:18:10,8:10:399:8:309:-22.7503,0,-30.8492 0/0:18:18,0:18:677:0:0:0,-5.41854,-61.2425 0/0:13:13,0:13:511:0:0:0,-3.91339,-46.3301 dDocent_Contig_14934 104 . N G 203.591 . AB=0;ABP=0;AC=6;AF=1;AN=6;AO=6;CIGAR=4X;DP=6;DPB=6;DPRA=0;EPP=16.0391;EPPR=0;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=0;NS=3;NUMALT=1;ODDS=1.69407e-21;PAIRED=1;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=208;QR=0;RO=0;RPL=0;RPP=16.0391;RPPR=0;RPR=6;RUN=1;SAF=0;SAP=16.0391;SAR=6;SRF=0;SRP=0;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 1|1:2:0,2:0:0:2:70:-6.6474,-0.60206,0 1|1:3:0,3:0:0:3:103:-9.61002,-0.90309,0 1|1:1:0,1:0:0:1:35:-3.49863,-0.30103,0 dDocent_Contig_14935 20 . A T 128.875 . AB=0.153153;ABP=118.998;AC=1;AF=0.166667;AN=6;AO=39;CIGAR=1X;DP=431;DPB=431;DPRA=0;EPP=87.6977;EPPR=819.838;GTI=0;LEN=1;MEANALT=1;MQM=32.0256;MQMR=54.4923;NS=3;NUMALT=1;ODDS=0;PAIRED=0.230769;PAIREDR=0.288265;PAO=0;PQA=0;PQR=0;PRO=0;QA=1504;QR=15530;RO=392;RPL=0;RPP=87.6977;RPPR=854.227;RPR=39;RUN=1;SAF=39;SAP=87.6977;SAR=0;SRF=388;SRP=819.838;SRR=4;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:190:176,14:176:7006:14:539:0,-27.4467,-588.881 0/0:130:122,8:122:4817:8:311:0,-21.9443,-408.838 0/1:111:94,17:94:3707:17:654:-14.7114,0,-295.394 dDocent_Contig_14936 8 . A G 78.4292 . AB=0.2;ABP=22.5536;AC=1;AF=0.166667;AN=6;AO=12;CIGAR=1X;DP=127;DPB=127;DPRA=0;EPP=29.068;EPPR=252.73;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=460;QR=4386;RO=115;RPL=0;RPP=29.068;RPPR=252.73;RPR=12;RUN=1;SAF=12;SAP=29.068;SAR=0;SRF=115;SRP=252.73;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:65:61,4:61:2345:4:156:0,-5.14966,-196.838 0/1:25:20,5:20:744:5:187:-9.66597,0,-59.7539 0/0:37:34,3:34:1297:3:117:0,-0.227729,-106.108 dDocent_Contig_14937 8 . A C 1599.3 . AB=0.0793651;ABP=196.65;AC=0;AF=0;AN=6;AO=10;CIGAR=1X1M1X8M;DP=226;DPB=226;DPRA=0;EPP=24.725;EPPR=168.042;GTI=0;LEN=1;MEANALT=8;MQM=60;MQMR=60;NS=3;NUMALT=6;ODDS=0;PAIRED=0;PAIREDR=0.0131579;PAO=0;PQA=0;PQR=0;PRO=0;QA=384;QR=2954;RO=76;RPL=0;RPP=24.725;RPPR=168.042;RPR=10;RUN=1;SAF=10;SAP=24.725;SAR=0;SRF=76;SRP=168.042;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|0:126:54,10,10,12,0,6,28:54:2102:10,10,12,0,6,28:384,382,468,0,241,1125:-76.4513,-61.1868,-230.919,-61.366,-202.588,-231.098,-54.2413,-195.463,-195.642,-223.372,-92.7069,-233.93,-234.109,-226.984,-265.451,-72.847,-214.07,-214.249,-207.125,-245.591,-243.785,0,-141.224,-141.403,-134.279,-172.745,-152.885,-164.317 0|0:22:4,0,4,1,2,1,9:4:152:0,4,1,2,1,9:0,154,38,72,40,350:-27.7361,-28.9403,-41.4048,-16.2958,-28.7601,-27.5559,-25.8241,-38.2886,-25.6438,-37.9875,-23.0701,-35.5339,-22.8897,-32.4178,-34.9318,-25.6444,-38.1091,-25.4641,-34.9928,-32.2382,-37.808,-0.181306,-12.646,0,-9.52966,-6.77659,-9.34943,-9.93671 0|0:78:18,0,20,19,3,6,11:18:700:0,20,19,3,6,11:0,763,748,122,236,441:-61.1796,-66.5981,-124.123,-4.00709,-61.5305,-55.5099,-5.06642,-62.5917,0,-56.8721,-56.534,-114.059,-51.4666,-52.5275,-113.156,-47.1867,-104.712,-42.1194,-43.1801,-94.6477,-102.906,-30.2622,-87.7877,-25.1951,-26.2554,-77.7236,-68.3762,-84.4764 dDocent_Contig_14938 30 . A G 100.426 . AB=0.241379;ABP=19.8579;AC=2;AF=0.333333;AN=6;AO=7;CIGAR=1X;DP=61;DPB=61;DPRA=0.453125;EPP=18.2106;EPPR=120.27;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=240;QR=2065;RO=54;RPL=0;RPP=18.2106;RPPR=120.27;RPR=7;RUN=1;SAF=7;SAP=18.2106;SAR=0;SRF=54;SRP=120.27;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:32:32,0:32:1190:0:0:0,-9.63296,-107.374 0/1:4:2,2:2:76:2:78:-6.19918,0,-6.01014 0/1:25:20,5:20:799:5:162:-7.36623,0,-64.7041 dDocent_Contig_14939 24 . A G 145.132 . AB=0.204545;ABP=36.372;AC=3;AF=0.5;AN=6;AO=9;CIGAR=1X;DP=44;DPB=44;DPRA=0;EPP=22.5536;EPPR=79.0118;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=0;PAIREDR=0.914286;PAO=0;PQA=0;PQR=0;PRO=0;QA=357;QR=1410;RO=35;RPL=0;RPP=22.5536;RPPR=79.0118;RPR=9;RUN=1;SAF=9;SAP=22.5536;SAR=0;SRF=35;SRP=79.0118;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:23:20,3:20:805:3:118:-4.07851,0,-65.8437 0/1:12:8,4:8:325:4:161:-11.2625,0,-26.0071 0/1:9:7,2:7:280:2:78:-4.69351,0,-22.8619 dDocent_Contig_14940 128 . A G 185.763 . AB=0.294118;ABP=15.5282;AC=2;AF=0.333333;AN=6;AO=10;CIGAR=1X;DP=39;DPB=39;DPRA=3.4;EPP=24.725;EPPR=63.8115;GTI=0;LEN=1;MEANALT=1.5;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=350;QR=840;RO=28;RPL=0;RPP=24.725;RPPR=63.8115;RPR=10;RUN=1;SAF=0;SAP=24.725;SAR=10;SRF=0;SRP=63.8115;SRR=28;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:25:18,6:18:543:6:232:-13.9006,0,-41.8411 0/1:9:5,4:5:158:4:118:-8.19857,0,-11.8231 0/0:5:5,0:5:139:0:0:0,-1.50515,-12.7834 dDocent_Contig_14942 93 . T C 46.8604 . AB=0.172414;ABP=30.0414;AC=2;AF=0.333333;AN=6;AO=5;CIGAR=1X;DP=34;DPB=34;DPRA=2.9;EPP=13.8677;EPPR=65.983;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=1.73472e-18;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=166;QR=985;RO=29;RPL=5;RPP=13.8677;RPPR=65.983;RPR=0;RUN=1;SAF=5;SAP=13.8677;SAR=0;SRF=29;SRP=65.983;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:19:17,2:17:593:2:64:-0.358801,0,-47.9787 0/0:5:5,0:5:175:0:0:0,-1.50515,-16.0937 0/1:10:7,3:7:217:3:102:-6.5066,0,-16.8222 dDocent_Contig_14945 11 . C T 80.9816 . AB=0.166667;ABP=20.3821;AC=1;AF=0.166667;AN=6;AO=3;CIGAR=1X2M1X;DP=28;DPB=28;DPRA=3.6;EPP=9.52472;EPPR=48.6112;GTI=0;LEN=1;MEANALT=2;MQM=60;MQMR=60;NS=3;NUMALT=2;ODDS=0;PAIRED=0;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=121;QR=824;RO=21;RPL=0;RPP=9.52472;RPPR=48.6112;RPR=3;RUN=1;SAF=3;SAP=9.52472;SAR=0;SRF=21;SRP=48.6112;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|0:6:6,0,0:6:240:0,0:0,0:0,-1.80618,-21.9758,-1.80618,-21.9758,-21.9758 0|0:4:4,0,0:4:157:0,0:0,0:0,-1.20412,-14.5083,-1.20412,-14.5083,-14.5083 0|1:18:11,4,3:11:427:4,3:161,121:-9.92176,0,-33.8676,-3.25807,-25.0942,-37.4288 dDocent_Contig_14946 20 . C T 734.917 . AB=0.29;ABP=41.3151;AC=2;AF=0.333333;AN=6;AO=31;CIGAR=1X;DP=138;DPB=138;DPRA=0;EPP=70.3259;EPPR=235.358;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=6.93889e-18;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=1248;QR=4321;RO=107;RPL=0;RPP=70.3259;RPPR=235.358;RPR=31;RUN=1;SAF=31;SAP=70.3259;SAR=0;SRF=107;SRP=235.358;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:89:61,28:61:2469:28:1128:-75.0076,0,-195.55 0/1:11:10,1:10:402:1:40:-0.684349,0,-33.2276 0/0:38:36,2:36:1450:2:80:0,-3.84735,-123.152 dDocent_Contig_14947 90 . A T 78.5364 . AB=0;ABP=0;AC=2;AF=0.5;AN=4;AO=4;CIGAR=2X3M1X2M2X;DP=5;DPB=5;DPRA=4;EPP=11.6962;EPPR=0;GTI=0;LEN=1;MEANALT=1;MQM=20;MQMR=0;NS=2;NUMALT=1;ODDS=0;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=152;QR=0;RO=0;RPL=4;RPP=11.6962;RPPR=0;RPR=0;RUN=1;SAF=0;SAP=11.6962;SAR=4;SRF=0;SRP=0;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 1|1:4:0,4:0:0:4:152:-7.37498,-1.20412,0 .:.:.:.:.:.:.:. 0|0:1:0,0:0:0:0:0:0,0,0 dDocent_Contig_14948 44 . C A 223.168 . AB=0.322581;ABP=11.486;AC=2;AF=0.333333;AN=6;AO=11;CIGAR=1X;DP=46;DPB=46;DPRA=0;EPP=26.8965;EPPR=79.0118;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=0.909091;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=420;QR=1293;RO=35;RPL=0;RPP=26.8965;RPPR=79.0118;RPR=11;RUN=1;SAF=11;SAP=26.8965;SAR=0;SRF=35;SRP=79.0118;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:26:20,6:20:732:6:227:-12.964,0,-58.366 0/0:15:14,1:14:522:1:38:0,-0.718181,-43.5178 0/1:5:1,4:1:39:4:155:-12.8203,0,-2.39141 dDocent_Contig_14949 36 . T A 81.4271 . AB=0.25;ABP=11.6962;AC=1;AF=0.166667;AN=6;AO=5;CIGAR=1X;DP=43;DPB=43;DPRA=6.66667;EPP=13.8677;EPPR=85.5263;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=200;QR=1474;RO=38;RPL=0;RPP=13.8677;RPPR=85.5263;RPR=5;RUN=1;SAF=5;SAP=13.8677;SAR=0;SRF=38;SRP=85.5263;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:24:23,1:23:876:1:40:0,-3.22904,-75.1461 0/1:16:12,4:12:481:4:160:-9.96644,0,-38.8242 0/0:3:3,0:3:117:0:0:0,-0.90309,-10.9093 dDocent_Contig_14951 172 . A G 66.545 . AB=0.333333;ABP=5.18177;AC=1;AF=0.166667;AN=6;AO=3;CIGAR=1X;DP=18;DPB=18;DPRA=2;EPP=9.52472;EPPR=35.5824;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=120;QR=573;RO=15;RPL=3;RPP=9.52472;RPPR=35.5824;RPR=0;RUN=1;SAF=0;SAP=9.52472;SAR=3;SRF=0;SRP=35.5824;SRR=15;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:7:7,0:7:273:0:0:0,-2.10721,-24.9326 0/0:2:2,0:2:78:0:0:0,-0.60206,-7.4033 0/1:9:6,3:6:222:3:120:-8.47804,0,-17.6252 dDocent_Contig_14953 46 . G A 947.294 . AB=0.507692;ABP=3.04371;AC=3;AF=0.5;AN=6;AO=33;CIGAR=1X;DP=65;DPB=65;DPRA=0;EPP=74.6689;EPPR=70.3259;GTI=0;LEN=1;MEANALT=1.33333;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=1320;QR=1230;RO=31;RPL=0;RPP=74.6689;RPPR=70.3259;RPR=33;RUN=1;SAF=33;SAP=74.6689;SAR=0;SRF=31;SRP=70.3259;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:17:6,10:6:245:10:393:-30.4969,0,-17.2038 0/1:31:10,21:10:400:21:850:-67.4801,0,-27.0275 0/1:17:15,2:15:585:2:77:-2.19069,0,-47.8671 dDocent_Contig_14954 11 . A G 49.1935 . AB=0.176471;ABP=18.4661;AC=1;AF=0.166667;AN=6;AO=5;CIGAR=1X2M1X;DP=121;DPB=121;DPRA=0;EPP=13.8677;EPPR=237.529;GTI=0;LEN=1;MEANALT=1.5;MQM=60;MQMR=60;NS=3;NUMALT=3;ODDS=6.93889e-18;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=192;QR=4270;RO=108;RPL=0;RPP=13.8677;RPPR=237.529;RPR=5;RUN=1;SAF=5;SAP=13.8677;SAR=0;SRF=108;SRP=237.529;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|0:66:60,0,6,0:60:2383:0,6,0:0,242,0:-2.28955,-20.3513,-216.517,0,-196.568,-194.762,-20.3513,-216.517,-196.568,-216.517 0|1:17:12,3,0,2:12:473:3,0,2:118,0,82:-6.08391,0,-37.9963,-9.69627,-38.8994,-48.605,-2.9215,-32.1289,-41.835,-41.2329 0|0:38:36,2,0,0:36:1414:2,0,0:74,0,0:0,-4.41428,-120.497,-10.8371,-121.099,-127.151,-10.8371,-121.099,-127.151,-127.151 dDocent_Contig_14955 76 . C A 44.7494 . AB=0.272727;ABP=7.94546;AC=1;AF=0.166667;AN=6;AO=3;CIGAR=1X;DP=22;DPB=22;DPRA=2;EPP=9.52472;EPPR=44.2683;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=103;QR=667;RO=19;RPL=3;RPP=9.52472;RPPR=44.2683;RPR=0;RUN=1;SAF=3;SAP=9.52472;SAR=0;SRF=19;SRP=44.2683;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:9:9,0:9:322:0:0:0,-2.70927,-29.3231 0/0:2:2,0:2:74:0:0:0,-0.60206,-7.02588 0/1:11:8,3:8:271:3:103:-6.29847,0,-21.408 dDocent_Contig_14956 63 . T C 486.022 . AB=0.291667;ABP=30.1537;AC=3;AF=0.5;AN=6;AO=21;CIGAR=1X;DP=72;DPB=72;DPRA=0;EPP=48.6112;EPPR=113.755;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=830;QR=2061;RO=51;RPL=21;RPP=48.6112;RPPR=113.755;RPR=0;RUN=1;SAF=21;SAP=48.6112;SAR=0;SRF=51;SRP=113.755;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:34:28,6:28:1130:6:240:-11.7395,0,-91.746 0/1:22:17,5:17:687:5:191:-10.9327,0,-55.5369 0/1:16:6,10:6:244:10:399:-31.4529,0,-17.5223 dDocent_Contig_14957 13 . A G 135.349 . AB=0.0789474;ABP=61.5258;AC=0;AF=0;AN=6;AO=3;CIGAR=1X2M1X;DP=86;DPB=86;DPRA=0;EPP=9.52472;EPPR=152.842;GTI=0;LEN=1;MEANALT=2;MQM=60;MQMR=60;NS=3;NUMALT=2;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=110;QR=2740;RO=69;RPL=0;RPP=9.52472;RPPR=152.842;RPR=3;RUN=1;SAF=3;SAP=9.52472;SAR=0;SRF=69;SRP=152.842;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|0:38:28,3,7:28:1111:3,7:110,278:-14.4781,-13.9255,-104.478,0,-82.495,-89.3754 0|0:17:14,0,2:14:557:0,2:0,80:-2.47546,-6.68988,-52.5921,0,-46.0006,-45.3985 0|0:31:27,0,3:27:1072:0,3:0,119:-1.68042,-9.80823,-98.0632,0,-88.2674,-87.3643 dDocent_Contig_14958 29 . T G 35.0281 . AB=0.285714;ABP=5.80219;AC=1;AF=0.25;AN=4;AO=2;CIGAR=1X2M1X;DP=14;DPB=14;DPRA=1;EPP=7.35324;EPPR=29.068;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=2;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=77;QR=454;RO=12;RPL=0;RPP=7.35324;RPPR=29.068;RPR=2;RUN=1;SAF=2;SAP=7.35324;SAR=0;SRF=12;SRP=29.068;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|1:7:5,2:5:198:2:77:-5.20162,0,-16.0904 0|0:7:7,0:7:256:0:0:0,-2.10721,-23.3861 .:.:.:.:.:.:.:. dDocent_Contig_14959 29 . T A 779.749 . AB=0.590909;ABP=6.16881;AC=2;AF=0.333333;AN=6;AO=26;CIGAR=1X;DP=46;DPB=46;DPRA=11;EPP=59.4686;EPPR=46.4397;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=1045;QR=804;RO=20;RPL=0;RPP=59.4686;RPPR=46.4397;RPR=26;RUN=1;SAF=26;SAP=59.4686;SAR=0;SRF=20;SRP=46.4397;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:29:11,18:11:443:18:723:-56.6642,0,-31.4947 0/0:2:2,0:2:81:0:0:0,-0.60206,-7.68573 0/1:15:7,8:7:280:8:322:-24.8333,0,-21.0558 dDocent_Contig_14960 25 . G A 48.9196 . AB=0.230769;ABP=11.1951;AC=1;AF=0.166667;AN=6;AO=10;CIGAR=1X;DP=104;DPB=104;DPRA=0;EPP=10.8276;EPPR=204.957;GTI=0;LEN=1;MEANALT=1.33333;MQM=53.4;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=0.7;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=379;QR=3709;RO=93;RPL=0;RPP=24.725;RPPR=204.957;RPR=10;RUN=1;SAF=8;SAP=10.8276;SAR=2;SRF=93;SRP=204.957;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:46:42,4:42:1674:4:145:0,-1.64268,-138.68 0/1:13:10,3:10:405:3:114:-6.71583,0,-32.8964 0/0:45:41,3:41:1630:3:120:0,-2.46499,-135.733 dDocent_Contig_14961 22 . G T 112.013 . AB=0.25;ABP=13.8677;AC=1;AF=0.166667;AN=6;AO=5;CIGAR=1X;DP=30;DPB=30;DPRA=4;EPP=13.8677;EPPR=57.2971;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=204;QR=999;RO=25;RPL=0;RPP=13.8677;RPPR=57.2971;RPR=5;RUN=1;SAF=5;SAP=13.8677;SAR=0;SRF=25;SRP=57.2971;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:20:15,5:15:601:5:204:-12.7234,0,-48.407 0/0:1:1,0:1:40:0:0:0,-0.30103,-3.99568 0/0:9:9,0:9:358:0:0:0,-2.70927,-32.5807 dDocent_Contig_14963 7 . A T 92.9246 . AB=0.119565;ABP=118.665;AC=2;AF=0.333333;AN=6;AO=12;CIGAR=1X;DP=109;DPB=109;DPRA=0;EPP=29.068;EPPR=213.643;GTI=0;LEN=1;MEANALT=1;MQM=56.1667;MQMR=58.2887;NS=3;NUMALT=1;ODDS=0;PAIRED=0.916667;PAIREDR=0.742268;PAO=0;PQA=0;PQR=0;PRO=0;QA=460;QR=3692;RO=97;RPL=0;RPP=29.068;RPPR=213.643;RPR=12;RUN=1;SAF=12;SAP=29.068;SAR=0;SRF=97;SRP=213.643;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:69:60,9:60:2289:9:347:-10.8135,0,-183.554 0/0:17:16,1:16:612:1:39:0,-3.32089,-52.8428 0/1:23:21,2:21:791:2:74:-0.101744,0,-63.6511 dDocent_Contig_14964 107 . N T 150.839 . AB=0;ABP=0;AC=2;AF=1;AN=2;AO=5;CIGAR=1X;DP=5;DPB=5;DPRA=0;EPP=13.8677;EPPR=0;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=0;NS=1;NUMALT=1;ODDS=8.07091;PAIRED=1;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=164;QR=0;RO=0;RPL=0;RPP=13.8677;RPPR=0;RPR=5;RUN=1;SAF=0;SAP=13.8677;SAR=5;SRF=0;SRP=0;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL ./.:.:.:.:.:.:.:. ./.:.:.:.:.:.:.:. 1/1:5:0,5:0:0:5:164:-15.0838,-1.50515,0 dDocent_Contig_14965 26 . G T 31.5812 . AB=0.176471;ABP=18.4661;AC=2;AF=0.5;AN=4;AO=3;CIGAR=1X;DP=17;DPB=17;DPRA=0;EPP=9.52472;EPPR=25.3454;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=2;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=0.785714;PAO=0;PQA=0;PQR=0;PRO=0;QA=123;QR=569;RO=14;RPL=0;RPP=9.52472;RPPR=33.4109;RPR=3;RUN=1;SAF=3;SAP=9.52472;SAR=0;SRF=13;SRP=25.3454;SRR=1;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:6:5,1:5:202:1:41:-2.28839,0,-16.7559 ./.:.:.:.:.:.:.:. 0/1:11:9,2:9:367:2:82:-4.46835,0,-30.0839 dDocent_Contig_14966 9 . G T 45.7112 . AB=0.1875;ABP=16.582;AC=1;AF=0.166667;AN=6;AO=4;CIGAR=1X;DP=52;DPB=52;DPRA=0.868421;EPP=11.6962;EPPR=107.241;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=1.73472e-18;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=156;QR=1836;RO=48;RPL=0;RPP=11.6962;RPPR=107.241;RPR=4;RUN=1;SAF=4;SAP=11.6962;SAR=0;SRF=48;SRP=107.241;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:16:13,3:13:488:3:117:-6.0939,0,-39.4443 0/0:17:16,1:16:609:1:39:0,-1.22095,-51.2505 0/0:19:19,0:19:739:0:0:0,-5.71957,-66.8411 dDocent_Contig_14967 43 . C T 64.6678 . AB=0.0869565;ABP=71.1757;AC=1;AF=0.166667;AN=6;AO=6;CIGAR=1X3M;DP=82;DPB=82;DPRA=0;EPP=16.0391;EPPR=150.67;GTI=0;LEN=1;MEANALT=2;MQM=60;MQMR=60;NS=3;NUMALT=3;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=241;QR=2722;RO=68;RPL=0;RPP=16.0391;RPPR=150.67;RPR=6;RUN=1;SAF=6;SAP=16.0391;SAR=0;SRF=68;SRP=150.67;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|1:46:37,3,4,2:37:1492:3,4,2:121,159,82:-1.9484,-3.11171,-125.194,0,-113.007,-121.777,-6.31615,-119.329,-116.213,-128.701 0|0:10:7,0,0,3:7:276:0,0,3:0,0,120:-8.17701,-10.2842,-32.9873,-10.2842,-32.9873,-32.9873,0,-23.1009,-23.1009,-22.1978 0|0:26:24,0,2,0:24:954:0,2,0:0,82,0:0,-7.22472,-85.7558,-0.0471021,-78.9867,-78.3846,-7.22472,-85.7558,-78.9867,-85.7558 dDocent_Contig_14968 143 . C A 80.3152 . AB=0.111111;ABP=50.3001;AC=1;AF=0.166667;AN=6;AO=4;CIGAR=1X5M4D1X3M;DP=98;DPB=93.1429;DPRA=0;EPP=11.6962;EPPR=105.07;GTI=0;LEN=1;MEANALT=5;MQM=16;MQMR=47.4255;NS=3;NUMALT=6;ODDS=0;PAIRED=0;PAIREDR=0.723404;PAO=0;PQA=0;PQR=0;PRO=0;QA=64;QR=1737;RO=47;RPL=0;RPP=11.6962;RPPR=105.07;RPR=4;RUN=1;SAF=0;SAP=11.6962;SAR=4;SRF=0;SRP=105.07;SRR=47;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|0:62:36,0,4,0,0,11,5:36:1312:0,4,0,0,11,5:0,156,0,0,217,31:-2.53432,-13.3714,-103.284,-8.81739,-98.7416,-97.5375,-13.3714,-103.284,-98.7416,-103.284,-13.3714,-103.284,-98.7416,-103.284,-103.284,0,-89.9578,-85.4173,-89.9578,-89.9578,-86.6464,-13.1959,-103.105,-98.5639,-103.105,-103.105,-89.784,-101.6 0|0:19:1,1,0,2,4,6,4:1:40:1,0,2,4,6,4:21,0,12,20,119,20:-7.03031,-6.00625,-7.56329,-7.33134,-7.86432,-9.18865,-7.29672,-7.83011,-9.1546,-8.55254,-7.56706,-8.10098,-9.42538,-9.39624,-8.22126,0,-0.534618,-1.86415,-1.82772,-2.09777,-0.0579709,-7.56706,-8.10098,-9.42538,-9.39624,-9.6752,-2.09777,-8.22126 0|1:17:10,2,0,2,0,0,2:10:385:2,0,2,0,0,2:42,0,52,0,0,10:-0.564095,-0.917824,-21.9536,-3.5744,-22.5557,-25.19,0,-19.0173,-21.6511,-21.0491,-3.5744,-22.5557,-25.19,-21.6511,-25.19,-3.5744,-22.5557,-25.19,-21.6511,-25.19,-25.19,-3.72747,-22.6949,-25.3246,-21.7894,-25.3246,-25.3246,-24.7225 dDocent_Contig_14969 171 . G A 267.809 . AB=0.44;ABP=3.79203;AC=3;AF=0.5;AN=6;AO=11;CIGAR=1X;DP=25;DPB=25;DPRA=0;EPP=26.8965;EPPR=33.4109;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=430;QR=557;RO=14;RPL=11;RPP=26.8965;RPPR=33.4109;RPR=0;RUN=1;SAF=0;SAP=26.8965;SAR=11;SRF=0;SRP=33.4109;SRR=14;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:15:8,7:8:316:7:278:-20.8744,0,-24.2877 0/1:3:1,2:1:39:2:70:-5.74239,0,-2.99347 0/1:7:5,2:5:202:2:82:-5.67247,0,-16.4549 dDocent_Contig_14970 22 . T C 977.664 . AB=0.112069;ABP=154.639;AC=3;AF=0.5;AN=6;AO=13;CIGAR=2X4M;DP=116;DPB=115;DPRA=0;EPP=31.2394;EPPR=146.327;GTI=0;LEN=1;MEANALT=2.66667;MQM=60;MQMR=60;NS=3;NUMALT=3;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=511;QR=2600;RO=66;RPL=0;RPP=31.2394;RPPR=146.327;RPR=13;RUN=1;SAF=13;SAP=31.2394;SAR=0;SRF=66;SRP=146.327;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|1:57:37,0,17,1:37:1447:0,17,1:0,667,40:-43.7045,-54.8426,-173.799,0,-118.947,-113.83,-51.5472,-170.504,-115.652,-170.203 0|1:16:5,0,1,10:5:202:0,1,10:0,38,399:-31.3681,-32.8733,-49.5288,-29.7585,-46.4136,-46.1125,0,-16.6732,-13.5607,-13.6629 0|1:43:24,6,11,2:24:951:6,11,2:242,431,72:-28.2167,-15.488,-91.9628,0,-58.3277,-74.9665,-29.5726,-87.8983,-72.4076,-107.246 dDocent_Contig_14971 23 . C T 344.931 . AB=0.3;ABP=20.3821;AC=3;AF=0.5;AN=6;AO=15;CIGAR=1X;DP=50;DPB=50;DPRA=0;EPP=35.5824;EPPR=79.0118;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=599;QR=1409;RO=35;RPL=0;RPP=35.5824;RPPR=79.0118;RPR=15;RUN=1;SAF=15;SAP=35.5824;SAR=0;SRF=35;SRP=79.0118;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:16:14,2:14:553:2:81:-2.86925,0,-45.2892 0/1:11:6,5:6:245:5:201:-15.1592,0,-19.1181 0/1:23:15,8:15:611:8:317:-21.9684,0,-48.4038 dDocent_Contig_14972 18 . G A 1103.98 . AB=0.0533333;ABP=132.98;AC=0;AF=0;AN=6;AO=4;CIGAR=2X1M2X2M1X3M1X;DP=91;DPB=91;DPRA=0;EPP=11.6962;EPPR=50.7827;GTI=0;LEN=1;MEANALT=4.5;MQM=60;MQMR=60;NS=3;NUMALT=5;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=159;QR=865;RO=22;RPL=0;RPP=11.6962;RPPR=50.7827;RPR=4;RUN=1;SAF=4;SAP=11.6962;SAR=0;SRF=22;SRP=50.7827;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|0:44:13,0,1,10,0,19:13:510:0,1,10,0,19:0,40,403,0,757:-58.4155,-62.3289,-104.269,-59.0338,-100.973,-100.672,-29.1109,-71.0504,-67.7553,-68.0401,-62.3289,-104.269,-100.973,-71.0504,-104.269,0,-41.9364,-38.6412,-8.71614,-41.9364,-36.2168 0|0:16:2,0,0,3,0,10:2:78:0,0,3,0,10:0,0,122,0,403:-36.2792,-36.8812,-43.2914,-36.8812,-43.2914,-43.2914,-26.817,-33.2269,-33.2269,-32.3238,-36.8812,-43.2914,-43.2914,-33.2269,-43.2914,-3.66386,-10.0715,-10.0715,0,-10.0715,-7.06119 0|0:31:7,5,3,4,5,7:7:277:5,3,4,5,7:199,119,161,200,283:-21.2262,-6.94851,-28.2393,-13.5379,-19.9488,-35.4309,-10.064,-16.4749,-23.0645,-31.6561,-6.85862,-13.2695,-19.859,-16.3851,-28.1496,0,-6.41089,-13.0006,-9.52649,-6.321,-20.6892 dDocent_Contig_14974 62 . C T 295.561 . AB=0.0952381;ABP=32.8939;AC=4;AF=0.666667;AN=6;AO=10;CIGAR=6M1X;DP=29;DPB=31.2857;DPRA=0;EPP=3.87889;EPPR=39.9253;GTI=0;LEN=1;MEANALT=1.33333;MQM=60;MQMR=60;NS=3;NUMALT=2;ODDS=0;PAIRED=0.4;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=388;QR=653;RO=17;RPL=10;RPP=24.725;RPPR=39.9253;RPR=0;RUN=1;SAF=6;SAP=3.87889;SAR=4;SRF=17;SRP=39.9253;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|1:14:11,2,1:11:434:2,1:74,40:-2.64787,0,-35.1033,-2.65285,-32.4099,-38.0862 1|1:8:0,0,8:0:0:0,8:0,311:-28.3499,-28.3499,-28.3499,-2.40824,-2.40824,0 0|1:7:6,0,1:6:219:0,1:0,37:-1.59062,-3.3968,-21.2807,0,-18.253,-17.9519 dDocent_Contig_14975 98 . N A 56.0333 . AB=0;ABP=0;AC=2;AF=1;AN=2;AO=2;CIGAR=3X;DP=2;DPB=2;DPRA=0;EPP=7.35324;EPPR=0;GTI=0;LEN=1;MEANALT=1;MQM=30;MQMR=0;NS=1;NUMALT=1;ODDS=5.99146;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=78;QR=0;RO=0;RPL=2;RPP=7.35324;RPPR=0;RPR=0;RUN=1;SAF=2;SAP=7.35324;SAR=0;SRF=0;SRP=0;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL .:.:.:.:.:.:.:. 1|1:2:0,2:0:0:2:78:-5.60225,-0.60206,0 .:.:.:.:.:.:.:. dDocent_Contig_14976 79 . T A 1038.61 . AB=0.239669;ABP=145.466;AC=3;AF=0.5;AN=6;AO=58;CIGAR=1X;DP=242;DPB=242;DPRA=0;EPP=128.956;EPPR=402.561;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=0.972826;PAO=0;PQA=0;PQR=0;PRO=0;QA=2014;QR=6348;RO=184;RPL=58;RPP=128.956;RPPR=402.561;RPR=0;RUN=1;SAF=58;SAP=128.956;SAR=0;SRF=184;SRP=402.561;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:155:129,26:129:4510:26:933:-37.6277,0,-359.376 0/1:22:16,6:16:560:6:216:-13.1679,0,-44.1026 0/1:65:39,26:39:1278:26:865:-58.5881,0,-95.7401 dDocent_Contig_14978 7 . A G 128.01 . AB=0.545455;ABP=3.20771;AC=1;AF=0.166667;AN=6;AO=6;CIGAR=1X;DP=23;DPB=23;DPRA=1.83333;EPP=16.0391;EPPR=37.7539;GTI=0;LEN=1;MEANALT=2;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=194;QR=613;RO=16;RPL=0;RPP=16.0391;RPPR=37.7539;RPR=6;RUN=1;SAF=6;SAP=16.0391;SAR=0;SRF=16;SRP=37.7539;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:6:6,0:6:228:0:0:0,-1.80618,-20.8839 0/1:11:4,6:4:153:6:194:-14.6249,0,-10.9669 0/0:6:6,0:6:232:0:0:0,-1.80618,-21.2489 dDocent_Contig_14982 20 . A G 610.728 . AB=0.047619;ABP=189.654;AC=2;AF=0.333333;AN=6;AO=5;CIGAR=1M1X5M;DP=145;DPB=143.143;DPRA=0;EPP=13.8677;EPPR=209.3;GTI=0;LEN=1;MEANALT=3.5;MQM=60;MQMR=60;NS=3;NUMALT=4;ODDS=2.77556e-17;PAIRED=1;PAIREDR=0.989474;PAO=0;PQA=0;PQR=0;PRO=0;QA=200;QR=3727;RO=95;RPL=0;RPP=13.8677;RPPR=209.3;RPR=5;RUN=1;SAF=5;SAP=13.8677;SAR=0;SRF=95;SRP=209.3;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|1:54:36,10,1,3,4:36:1420:10,1,3,4:394,40,121,163:-21.5707,0,-113.814,-29.1127,-113.529,-145.641,-22.4329,-106.849,-135.968,-138.36,-18.9581,-103.376,-132.494,-125.815,-134.585 0|1:51:28,14,7,2,0:28:1096:14,7,2,0:558,284,79,0:-37.5169,0,-85.8847,-22.5219,-66.6749,-110.519,-39.4457,-83.5985,-106.125,-128.946,-45.9458,-90.0991,-112.626,-129.548,-136.049 0|0:40:31,4,5,0,0:31:1211:4,5,0,0:157,204,0,0:-7.508,-3.9342,-102.264,0,-86.6343,-98.0419,-16.8399,-103.468,-99.547,-116.381,-16.8399,-103.468,-99.547,-116.381,-116.381 dDocent_Contig_14984 16 . C T 46.5222 . AB=0.185185;ABP=26.2531;AC=2;AF=0.333333;AN=6;AO=5;CIGAR=1X;DP=34;DPB=34;DPRA=1.92857;EPP=13.8677;EPPR=19.8579;GTI=0;LEN=1;MEANALT=1;MQM=50;MQMR=57.5862;NS=3;NUMALT=1;ODDS=0;PAIRED=0;PAIREDR=0.482759;PAO=0;PQA=0;PQR=0;PRO=0;QA=174;QR=1124;RO=29;RPL=0;RPP=13.8677;RPPR=65.983;RPR=5;RUN=1;SAF=0;SAP=13.8677;SAR=5;SRF=22;SRP=19.8579;SRR=7;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:11:9,2:9:335:2:70:-3.31299,0,-27.1442 0/1:16:13,3:13:506:3:104:-4.8549,0,-41.0341 0/0:7:7,0:7:283:0:0:0,-2.10721,-25.8434 dDocent_Contig_14985 9 . G T 84.4246 . AB=0.12987;ABP=94.6352;AC=2;AF=0.333333;AN=6;AO=10;CIGAR=1X;DP=180;DPB=180;DPRA=0.373786;EPP=24.725;EPPR=372.161;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=382;QR=6485;RO=170;RPL=0;RPP=24.725;RPPR=372.161;RPR=10;RUN=1;SAF=10;SAP=24.725;SAR=0;SRF=170;SRP=372.161;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:103:103,0:103:3904:0:0:0,-31.0061,-351.458 0/1:17:13,4:13:500:4:155:-9.20793,0,-40.2308 0/1:60:54,6:54:2081:6:227:-2.73134,0,-169.459 dDocent_Contig_14986 30 . C A 143.07 . AB=0.241379;ABP=19.8579;AC=2;AF=0.333333;AN=6;AO=7;CIGAR=1X;DP=41;DPB=41;DPRA=1.20833;EPP=18.2106;EPPR=76.8404;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=1.73472e-18;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=286;QR=1372;RO=34;RPL=0;RPP=18.2106;RPPR=76.8404;RPR=7;RUN=1;SAF=7;SAP=18.2106;SAR=0;SRF=34;SRP=76.8404;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:24:21,3:21:843:3:123:-4.24007,0,-68.9573 0/0:12:12,0:12:488:0:0:0,-3.61236,-44.2709 0/1:5:1,4:1:41:4:163:-13.5533,0,-2.58942 dDocent_Contig_14987 54 . A G 117.053 . AB=0.225806;ABP=23.254;AC=3;AF=0.5;AN=6;AO=7;CIGAR=1X;DP=31;DPB=31;DPRA=0;EPP=18.2106;EPPR=55.1256;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=282;QR=907;RO=24;RPL=7;RPP=18.2106;RPPR=55.1256;RPR=0;RUN=1;SAF=7;SAP=18.2106;SAR=0;SRF=24;SRP=55.1256;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:10:7,3:7:253:3:120:-8.17739,0,-20.096 0/1:11:9,2:9:353:2:81:-4.3744,0,-28.817 0/1:10:8,2:8:301:2:81:-4.67543,0,-24.4308 dDocent_Contig_14988 29 . T G 2170.08 . AB=0.66055;ABP=27.4145;AC=3;AF=0.5;AN=6;AO=72;CIGAR=2X;DP=109;DPB=109;DPRA=0;EPP=159.356;EPPR=74.6689;GTI=0;LEN=1;MEANALT=1.33333;MQM=60;MQMR=60;NS=3;NUMALT=2;ODDS=0;PAIRED=0.944444;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=2817;QR=1323;RO=33;RPL=0;RPP=159.356;RPPR=74.6689;RPR=72;RUN=1;SAF=72;SAP=159.356;SAR=0;SRF=33;SRP=74.6689;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|1:59:20,35,4:20:802:35,4:1397,162:-109.029,0,-55.5366,-101.691,-52.7138,-166.563 0|1:18:2,16,0:2:79:16,0:615,0:-50.2626,0,-2.07909,-50.8646,-6.89557,-57.3668 0|1:32:11,21,0:11:442:21,0:805,0:-63.1326,0,-30.5023,-66.4439,-36.824,-102.873 dDocent_Contig_14989 98 . N G 385.647 . AB=0;ABP=0;AC=6;AF=1;AN=6;AO=12;CIGAR=1X;DP=12;DPB=12;DPRA=0;EPP=29.068;EPPR=0;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=0;NS=3;NUMALT=1;ODDS=0;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=412;QR=0;RO=0;RPL=12;RPP=29.068;RPPR=0;RPR=0;RUN=1;SAF=12;SAP=29.068;SAR=0;SRF=0;SRP=0;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 1/1:2:0,2:0:0:2:66:-6.26818,-0.60206,0 1/1:3:0,3:0:0:3:103:-9.60997,-0.90309,0 1/1:7:0,7:0:0:7:243:-22.2088,-2.10721,0 dDocent_Contig_14990 29 . A T 31.5286 . AB=0.2;ABP=10.8276;AC=1;AF=0.166667;AN=6;AO=2;CIGAR=2X;DP=52;DPB=52;DPRA=0.47619;EPP=7.35324;EPPR=111.584;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=81;QR=1957;RO=50;RPL=0;RPP=7.35324;RPPR=111.584;RPR=2;RUN=1;SAF=2;SAP=7.35324;SAR=0;SRF=50;SRP=111.584;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|1:10:8,2:8:305:2:81:-4.67543,0,-24.7953 0|0:20:20,0:20:782:0:0:0,-6.0206,-70.698 0|0:22:22,0:22:870:0:0:0,-6.62266,-78.6087 dDocent_Contig_14992 16 . A T 97.4716 . AB=0.333333;ABP=5.9056;AC=1;AF=0.25;AN=4;AO=4;CIGAR=1X;DP=17;DPB=17;DPRA=2.4;EPP=11.6962;EPPR=31.2394;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=2;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=163;QR=529;RO=13;RPL=0;RPP=11.6962;RPPR=31.2394;RPR=4;RUN=1;SAF=4;SAP=11.6962;SAR=0;SRF=13;SRP=31.2394;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:12:8,4:8:327:4:163:-11.4461,0,-26.1877 0/0:5:5,0:5:202:0:0:0,-1.50515,-18.5619 ./.:.:.:.:.:.:.:. dDocent_Contig_14994 66 . G C 77.7682 . AB=0.25;ABP=11.6962;AC=1;AF=0.166667;AN=6;AO=4;CIGAR=1X;DP=47;DPB=47;DPRA=1.03226;EPP=11.6962;EPPR=96.3836;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=156;QR=1575;RO=43;RPL=4;RPP=11.6962;RPPR=96.3836;RPR=0;RUN=1;SAF=4;SAP=11.6962;SAR=0;SRF=43;SRP=96.3836;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:27:27,0:27:1008:0:0:0,-8.12781,-91.02 0/1:16:12,4:12:422:4:156:-9.60064,0,-33.4866 0/0:4:4,0:4:145:0:0:0,-1.20412,-13.4027 dDocent_Contig_14995 45 . T C 94.3899 . AB=0.307692;ABP=7.18621;AC=1;AF=0.166667;AN=6;AO=4;CIGAR=1X;DP=25;DPB=25;DPRA=2.16667;EPP=11.6962;EPPR=48.6112;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=161;QR=806;RO=21;RPL=0;RPP=11.6962;RPPR=48.6112;RPR=4;RUN=1;SAF=4;SAP=11.6962;SAR=0;SRF=21;SRP=48.6112;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:13:9,4:9:334:4:161:-10.9615,0,-26.4812 0/0:10:10,0:10:392:0:0:0,-3.0103,-35.6343 0/0:2:2,0:2:80:0:0:0,-0.60206,-7.59157 dDocent_Contig_14996 20 . G A 98.8615 . AB=0.310345;ABP=12.0706;AC=2;AF=0.333333;AN=6;AO=10;CIGAR=1X;DP=42;DPB=42;DPRA=0;EPP=24.725;EPPR=72.4974;GTI=0;LEN=1;MEANALT=1;MQM=27;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=0;PAIREDR=0.84375;PAO=0;PQA=0;PQR=0;PRO=0;QA=392;QR=1265;RO=32;RPL=0;RPP=24.725;RPPR=72.4974;RPR=10;RUN=1;SAF=10;SAP=24.725;SAR=0;SRF=32;SRP=72.4974;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:19:14,5:14:565:5:190:-6.50468,0,-45.4722 0/1:10:6,4:6:235:4:161:-6.90426,0,-18.5061 0/0:13:12,1:12:465:1:41:0,-1.23031,-39.5124 dDocent_Contig_14997 37 . C T 287.811 . AB=0.285714;ABP=22.5536;AC=2;AF=0.5;AN=4;AO=14;CIGAR=1X;DP=49;DPB=49;DPRA=0;EPP=33.4109;EPPR=79.0118;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=2;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=517;QR=1411;RO=35;RPL=0;RPP=33.4109;RPPR=79.0118;RPR=14;RUN=1;SAF=14;SAP=33.4109;SAR=0;SRF=35;SRP=79.0118;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:31:26,5:26:1047:5:199:-8.95613,0,-85.1898 ./.:.:.:.:.:.:.:. 0/1:18:9,9:9:364:9:318:-23.5239,0,-27.7058 dDocent_Contig_14998 54 . C T 88.993 . AB=0.130435;ABP=84.8654;AC=2;AF=0.333333;AN=6;AO=9;CIGAR=1X;DP=92;DPB=92;DPRA=1.5;EPP=22.5536;EPPR=183.243;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=357;QR=3300;RO=83;RPL=9;RPP=22.5536;RPPR=183.243;RPR=0;RUN=1;SAF=9;SAP=22.5536;SAR=0;SRF=83;SRP=183.243;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:56:51,5:51:2011:5:199:-1.42907,0,-164.326 0/1:13:9,4:9:368:4:158:-10.686,0,-29.572 0/0:23:23,0:23:921:0:0:0,-6.92369,-83.1907 dDocent_Contig_14999 12 . T C 606.644 . AB=0.392857;ABP=11.386;AC=3;AF=0.5;AN=6;AO=33;CIGAR=1X;DP=84;DPB=84;DPRA=0;EPP=74.6689;EPPR=38.8183;GTI=0;LEN=1;MEANALT=1;MQM=31.303;MQMR=48.9412;NS=3;NUMALT=1;ODDS=0;PAIRED=0;PAIREDR=0.705882;PAO=0;PQA=0;PQR=0;PRO=0;QA=1298;QR=1742;RO=51;RPL=0;RPP=74.6689;RPPR=113.755;RPR=33;RUN=1;SAF=33;SAP=74.6689;SAR=0;SRF=40;SRP=38.8183;SRR=11;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:42:34,8:34:1175:8:322:-10.2628,0,-89.5571 0/1:10:7,3:7:214:3:120:-4.62475,0,-16.4624 0/1:32:10,22:10:353:22:856:-51.2994,0,-10.1572 dDocent_Contig_15001 19 . T C 2574.48 . AB=0.691667;ABP=41.3006;AC=3;AF=0.5;AN=6;AO=83;CIGAR=1X;DP=120;DPB=120;DPRA=0;EPP=183.243;EPPR=83.3548;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=3314;QR=1487;RO=37;RPL=0;RPP=183.243;RPPR=83.3548;RPR=83;RUN=1;SAF=83;SAP=183.243;SAR=0;SRF=37;SRP=83.3548;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:64:8,56:8:309:56:2240:-182.498,0,-8.90228 0/1:8:3,5:3:123:5:188:-14.8731,0,-9.05655 0/1:48:26,22:26:1055:22:886:-65.5994,0,-80.7881 dDocent_Contig_15002 127 . C A 768.764 . AB=0.222727;ABP=149.92;AC=2;AF=0.333333;AN=6;AO=49;CIGAR=1X;DP=237;DPB=237;DPRA=6.47059;EPP=109.412;EPPR=411.247;GTI=0;LEN=1;MEANALT=1;MQM=40;MQMR=39.7926;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=1675;QR=6379;RO=188;RPL=0;RPP=109.412;RPPR=411.247;RPR=49;RUN=1;SAF=0;SAP=109.412;SAR=49;SRF=0;SRP=411.247;SRR=188;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:154:116,38:116:3961:38:1317:-68.6215,0,-296.914 0/0:17:17,0:17:578:0:0:0,-5.11751,-50.7797 0/1:66:55,11:55:1840:11:358:-11.7778,0,-140.984 dDocent_Contig_15003 55 . G A 87.0753 . AB=0.155172;ABP=62.913;AC=2;AF=0.333333;AN=6;AO=9;CIGAR=1X;DP=63;DPB=63;DPRA=5.8;EPP=22.5536;EPPR=120.27;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=322;QR=2050;RO=54;RPL=9;RPP=22.5536;RPPR=120.27;RPR=0;RUN=1;SAF=9;SAP=22.5536;SAR=0;SRF=54;SRP=120.27;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:44:38,6:38:1443:6:206:-5.62704,0,-116.904 0/0:5:5,0:5:202:0:0:0,-1.50515,-18.5619 0/1:14:11,3:11:405:3:116:-6.60328,0,-32.5756 dDocent_Contig_15004 14 . A T 467.854 . AB=0.241379;ABP=53.5532;AC=2;AF=0.333333;AN=6;AO=21;CIGAR=1X;DP=98;DPB=98;DPRA=3.95455;EPP=48.6112;EPPR=170.214;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=6.93889e-18;PAIRED=1;PAIREDR=0.987013;PAO=0;PQA=0;PQR=0;PRO=0;QA=842;QR=3114;RO=77;RPL=0;RPP=48.6112;RPPR=170.214;RPR=21;RUN=1;SAF=21;SAP=48.6112;SAR=0;SRF=77;SRP=170.214;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:70:52,18:52:2104:18:720:-44.0533,0,-168.462 0/0:11:11,0:11:439:0:0:0,-3.31133,-39.8639 0/1:17:14,3:14:571:3:122:-6.25498,0,-46.6144 dDocent_Contig_15005 53 . G A 519.583 . AB=0.392157;ABP=8.16222;AC=3;AF=0.5;AN=6;AO=20;CIGAR=1X;DP=51;DPB=51;DPRA=0;EPP=46.4397;EPPR=70.3259;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=797;QR=1218;RO=31;RPL=20;RPP=46.4397;RPPR=70.3259;RPR=0;RUN=1;SAF=20;SAP=46.4397;SAR=0;SRF=31;SRP=70.3259;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:28:22,6:22:866:6:245:-14.0006,0,-69.8223 0/1:15:3,12:3:107:12:475:-38.5797,0,-5.46295 0/1:8:6,2:6:245:2:77:-4.90059,0,-20.0212 dDocent_Contig_15007 16 . T C 47.5515 . AB=0.2;ABP=14.7363;AC=1;AF=0.166667;AN=6;AO=3;CIGAR=1X;DP=48;DPB=48;DPRA=0.909091;EPP=9.52472;EPPR=100.727;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=119;QR=1810;RO=45;RPL=0;RPP=9.52472;RPPR=100.727;RPR=3;RUN=1;SAF=3;SAP=9.52472;SAR=0;SRF=45;SRP=100.727;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:10:10,0:10:395:0:0:0,-3.0103,-35.903 0/0:23:23,0:23:926:0:0:0,-6.92369,-83.643 0/1:15:12,3:12:489:3:119:-6.57905,0,-39.8457 dDocent_Contig_15008 154 . C G 452.498 . AB=0.135135;ABP=88.5781;AC=4;AF=0.666667;AN=6;AO=10;CIGAR=1X1M6I12M;DP=74;DPB=91;DPRA=0;EPP=24.725;EPPR=48.6112;GTI=0;LEN=1;MEANALT=4.33333;MQM=60;MQMR=60;NS=3;NUMALT=5;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=283;QR=797;RO=21;RPL=0;RPP=24.725;RPPR=48.6112;RPR=10;RUN=1;SAF=0;SAP=24.725;SAR=10;SRF=0;SRP=48.6112;SRR=21;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|1:47:14,9,10,3,9,1:14:527:9,10,3,9,1:301,313,99,291,27:-20.9336,-0.771544,-41.2639,0,-18.8304,-40.1887,-17.1431,-35.9698,-35.1961,-59.4377,-1.67399,-20.5044,-19.7322,-36.8709,-42.1649,-23.0209,-41.8463,-41.0723,-58.2136,-42.7473,-65.9161 1|1:6:0,0,0,0,1,5:0:0:0,0,0,1,5:0,0,0,32,151:-14.9659,-14.9659,-14.9659,-14.9659,-14.9659,-14.9659,-14.9659,-14.9659,-14.9659,-14.9659,-12.3846,-12.3846,-12.3846,-12.3846,-12.0835,-2.89828,-2.89828,-2.89828,-2.89828,0,-1.39313 0|1:21:7,1,2,0,6,4:7:270:1,2,0,6,4:27,62,0,201,105:-14.207,-14.1868,-36.0928,-11.3335,-31.4182,-32.9421,-16.3142,-36.3938,-33.5442,-38.5201,0,-20.11,-17.2593,-22.2357,-20.4295,-8.0795,-28.1642,-25.3152,-30.289,-14.0098,-29.0849 dDocent_Contig_15010 11 . G C 39.6154 . AB=0.333333;ABP=4.45795;AC=1;AF=0.166667;AN=6;AO=2;CIGAR=1X;DP=24;DPB=24;DPRA=0.666667;EPP=7.35324;EPPR=50.7827;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=80;QR=844;RO=22;RPL=0;RPP=7.35324;RPPR=50.7827;RPR=2;RUN=1;SAF=2;SAP=7.35324;SAR=0;SRF=22;SRP=50.7827;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:10:10,0:10:394:0:0:0,-3.0103,-35.8152 0/1:6:4,2:4:138:2:80:-5.78539,0,-10.9503 0/0:8:8,0:8:312:0:0:0,-2.40824,-28.4421 dDocent_Contig_15011 140 . A G 122.341 . AB=0.25;ABP=16.0391;AC=1;AF=0.25;AN=4;AO=6;CIGAR=1X;DP=29;DPB=29;DPRA=4.8;EPP=16.0391;EPPR=52.9542;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=2;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=231;QR=874;RO=23;RPL=0;RPP=16.0391;RPPR=52.9542;RPR=6;RUN=1;SAF=0;SAP=16.0391;SAR=6;SRF=0;SRP=52.9542;SRR=23;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:24:18,6:18:682:6:231:-13.933,0,-54.4851 ./.:.:.:.:.:.:.:. 0/0:5:5,0:5:192:0:0:0,-1.50515,-17.6498 dDocent_Contig_15012 17 . A G 472.118 . AB=0.461538;ABP=3.51141;AC=3;AF=0.5;AN=6;AO=18;CIGAR=1X1M1X;DP=39;DPB=39;DPRA=0;EPP=42.0968;EPPR=48.6112;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=704;QR=832;RO=21;RPL=0;RPP=42.0968;RPPR=48.6112;RPR=18;RUN=1;SAF=18;SAP=42.0968;SAR=0;SRF=21;SRP=48.6112;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|1:11:6,5:6:243:5:198:-14.8857,0,-18.9368 0|1:12:9,3:9:355:3:118:-7.39015,0,-28.6986 0|1:16:6,10:6:234:10:388:-30.4588,0,-16.6123 dDocent_Contig_15013 107 . N T 392.214 . AB=0;ABP=0;AC=6;AF=1;AN=6;AO=19;CIGAR=1X;DP=20;DPB=20;DPRA=0;EPP=44.2683;EPPR=0;GTI=0;LEN=1;MEANALT=1.33333;MQM=60;MQMR=0;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=425;QR=0;RO=0;RPL=0;RPP=44.2683;RPPR=0;RPR=19;RUN=1;SAF=0;SAP=44.2683;SAR=19;SRF=0;SRP=0;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 1/1:10:0,9:0:0:9:204:-18.4005,-2.70927,0 1/1:3:0,3:0:0:3:73:-6.81287,-0.90309,0 1/1:7:0,7:0:0:7:148:-13.5307,-2.10721,0 dDocent_Contig_15016 11 . C G 84.5462 . AB=0.145455;ABP=63.0614;AC=2;AF=0.333333;AN=6;AO=16;CIGAR=1X;DP=161;DPB=161;DPRA=0;EPP=37.7539;EPPR=317.874;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=6.93889e-18;PAIRED=1;PAIREDR=0.951724;PAO=0;PQA=0;PQR=0;PRO=0;QA=608;QR=5755;RO=145;RPL=0;RPP=37.7539;RPPR=317.874;RPR=16;RUN=1;SAF=16;SAP=37.7539;SAR=0;SRF=145;SRP=317.874;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:106:98,8:98:3904:8:314:0,-3.28387,-322.732 0/1:19:14,5:14:555:5:174:-10.2753,0,-44.5756 0/1:36:33,3:33:1296:3:120:-0.350822,0,-106.062 dDocent_Contig_15017 19 . A C 374.151 . AB=0.218391;ABP=62.9379;AC=3;AF=0.5;AN=6;AO=19;CIGAR=1X;DP=87;DPB=87;DPRA=0;EPP=44.2683;EPPR=125.762;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=0.926471;PAO=0;PQA=0;PQR=0;PRO=0;QA=738;QR=2688;RO=68;RPL=0;RPP=44.2683;RPPR=150.67;RPR=19;RUN=1;SAF=19;SAP=44.2683;SAR=0;SRF=65;SRP=125.762;SRR=3;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:65:51,14:51:2009:14:550:-30.269,0,-161.442 0/1:10:6,4:6:241:4:148:-10.6655,0,-19.056 0/1:12:11,1:11:438:1:40:-0.383319,0,-36.1619 dDocent_Contig_15018 11 . C T 305.152 . AB=0.5;ABP=3.0103;AC=1;AF=0.166667;AN=6;AO=15;CIGAR=1X;DP=155;DPB=155;DPRA=1.11458;EPP=35.5824;EPPR=289.893;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=0.792857;PAO=0;PQA=0;PQR=0;PRO=0;QA=587;QR=5648;RO=140;RPL=0;RPP=35.5824;RPPR=307.016;RPR=15;RUN=1;SAF=15;SAP=35.5824;SAR=0;SRF=138;SRP=289.893;SRR=2;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:85:81,4:81:3258:4:158:0,-10.9877,-278.676 0/1:22:11,11:11:444:11:429:-32.3391,0,-33.6931 0/0:48:48,0:48:1946:0:0:0,-14.4494,-175.328 dDocent_Contig_15019 25 . T C 221.603 . AB=0.533333;ABP=3.15506;AC=1;AF=0.166667;AN=6;AO=8;CIGAR=2X5M;DP=58;DPB=58;DPRA=0.697674;EPP=20.3821;EPPR=105.07;GTI=0;LEN=1;MEANALT=3;MQM=60;MQMR=60;NS=3;NUMALT=2;ODDS=3.46945e-18;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=307;QR=1830;RO=47;RPL=0;RPP=20.3821;RPPR=105.07;RPR=8;RUN=1;SAF=8;SAP=20.3821;SAR=0;SRF=47;SRP=105.07;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|0:28:28,0,0:28:1085:0,0:0,0:0,-8.42884,-97.9467,-8.42884,-97.9467,-97.9467 0|1:15:4,2,8:4:158:2,8:79,307:-23.9842,-18.6856,-31.0884,0,-6.5003,-10.5927 0|0:15:15,0,0:15:587:0,0:0,0:0,-4.51545,-53.1681,-4.51545,-53.1681,-53.1681 dDocent_Contig_15020 76 . G T 67.1065 . AB=0.148936;ABP=53.3238;AC=3;AF=0.5;AN=6;AO=7;CIGAR=1X;DP=47;DPB=47;DPRA=0;EPP=18.2106;EPPR=89.8692;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=279;QR=1564;RO=40;RPL=7;RPP=18.2106;RPPR=89.8692;RPR=0;RUN=1;SAF=7;SAP=18.2106;SAR=0;SRF=40;SRP=89.8692;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:25:21,4:21:848:4:161:-7.34973,0,-69.1068 0/1:5:4,1:4:133:1:40:-2.49053,0,-10.7848 0/1:17:15,2:15:583:2:78:-2.28596,0,-47.6956 dDocent_Contig_15021 24 . T C 131.363 . AB=0.26087;ABP=14.4341;AC=1;AF=0.166667;AN=6;AO=8;CIGAR=1X;DP=144;DPB=144;DPRA=0.36747;EPP=20.3821;EPPR=298.331;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=321;QR=5405;RO=136;RPL=0;RPP=20.3821;RPPR=298.331;RPR=8;RUN=1;SAF=8;SAP=20.3821;SAR=0;SRF=136;SRP=298.331;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:83:83,0:83:3296:0:0:0,-24.9855,-296.695 0/1:23:17,6:17:675:6:239:-14.9602,0,-54.1542 0/0:38:36,2:36:1434:2:82:0,-3.65946,-121.53 dDocent_Contig_15022 27 . A G 265.833 . AB=0.240741;ABP=34.5369;AC=2;AF=0.333333;AN=6;AO=13;CIGAR=1X;DP=70;DPB=70;DPRA=1.6875;EPP=31.2394;EPPR=126.784;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=507;QR=2252;RO=57;RPL=0;RPP=31.2394;RPPR=126.784;RPR=13;RUN=1;SAF=13;SAP=31.2394;SAR=0;SRF=57;SRP=126.784;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:29:25,4:25:1007:4:156:-5.68596,0,-82.1956 0/0:16:16,0:16:624:0:0:0,-4.81648,-56.4902 0/1:25:16,9:16:621:9:351:-24.4202,0,-48.689 dDocent_Contig_15023 64 . G T 118.308 . AB=0.204545;ABP=36.372;AC=3;AF=0.5;AN=6;AO=9;CIGAR=1X;DP=44;DPB=44;DPRA=0;EPP=22.5536;EPPR=79.0118;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=328;QR=1244;RO=35;RPL=9;RPP=22.5536;RPPR=79.0118;RPR=0;RUN=1;SAF=9;SAP=22.5536;SAR=0;SRF=35;SRP=79.0118;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:17:14,3:14:514:3:111:-5.23641,0,-41.4834 0/1:6:4,2:4:140:2:73:-5.12512,0,-11.1386 0/1:21:17,4:17:590:4:144:-6.99199,0,-47.1037 dDocent_Contig_15025 136 . C T 1042.44 . AB=0.403509;ABP=12.2295;AC=3;AF=0.5;AN=6;AO=46;CIGAR=1X;DP=114;DPB=114;DPRA=0;EPP=102.898;EPPR=150.67;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=1590;QR=2344;RO=68;RPL=0;RPP=102.898;RPPR=150.67;RPR=46;RUN=1;SAF=0;SAP=102.898;SAR=46;SRF=0;SRP=150.67;SRR=68;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:54:34,20:34:1150:20:691:-46.2568,0,-87.5423 0/1:27:18,9:18:647:9:313:-20.379,0,-50.4319 0/1:33:16,17:16:547:17:586:-43.1311,0,-39.6206 dDocent_Contig_15026 14 . C T 53.2134 . AB=0.181818;ABP=22.3561;AC=2;AF=0.333333;AN=6;AO=5;CIGAR=1X;DP=45;DPB=45;DPRA=0;EPP=13.8677;EPPR=89.8692;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=204;QR=1609;RO=40;RPL=0;RPP=13.8677;RPPR=89.8692;RPR=5;RUN=1;SAF=5;SAP=13.8677;SAR=0;SRF=40;SRP=89.8692;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:23:22,1:22:885:1:41:0,-2.82912,-75.863 0/1:12:10,2:10:400:2:81:-4.07337,0,-32.7456 0/1:10:8,2:8:324:2:82:-4.76938,0,-26.5191 dDocent_Contig_15027 54 . G T 1201.98 . AB=0.714286;ABP=22.5536;AC=4;AF=0.666667;AN=6;AO=38;CIGAR=1X;DP=52;DPB=52;DPRA=0;EPP=85.5263;EPPR=33.4109;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=1527;QR=560;RO=14;RPL=38;RPP=85.5263;RPPR=33.4109;RPR=0;RUN=1;SAF=38;SAP=85.5263;SAR=0;SRF=14;SRP=33.4109;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:24:5,19:5:201:19:760:-61.4948,0,-11.2453 1/1:3:0,3:0:0:3:120:-11.1873,-0.90309,0 0/1:25:9,16:9:359:16:647:-51.0381,0,-25.1471 dDocent_Contig_15028 11 . C T 88.4079 . 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AB=0.214286;ABP=62.5707;AC=2;AF=0.333334;AN=6;AO=18;CIGAR=5M1X;DP=96;DPB=94.3333;DPRA=3.5;EPP=42.0968;EPPR=148.499;GTI=0;LEN=1;MEANALT=2.5;MQM=60;MQMR=60;NS=3;NUMALT=2;ODDS=0;PAIRED=0.611111;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=710;QR=2658;RO=67;RPL=0;RPP=42.0968;RPPR=148.499;RPR=18;RUN=1;SAF=18;SAP=42.0968;SAR=0;SRF=67;SRP=148.499;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|1:43:24,5,14:24:962:5,14:194,548:-37.8315,-29.1205,-106.88,0,-63.3353,-75.0553 0|0:12:12,0,0:12:472:0,0:0,0:0,-3.61236,-42.8322,-3.61236,-42.8322,-42.8322 0|1:41:31,5,4:31:1224:5,4:196,162:-4.43729,0,-99.2148,-0.383742,-87.3603,-99.9422 dDocent_Contig_15035 13 . G T 251.006 . 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AB=0.385965;ABP=9.44853;AC=3;AF=0.5;AN=6;AO=22;CIGAR=1X;DP=57;DPB=57;DPRA=0;EPP=50.7827;EPPR=79.0118;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=636;QR=1161;RO=35;RPL=0;RPP=50.7827;RPPR=79.0118;RPR=22;RUN=1;SAF=0;SAP=50.7827;SAR=22;SRF=0;SRP=79.0118;SRR=35;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:28:16,12:16:529:12:355:-23.8116,0,-39.4976 0/1:6:4,2:4:130:2:60:-3.89279,0,-10.2155 0/1:23:15,8:15:502:8:221:-13.2398,0,-38.5756 dDocent_Contig_15042 106 . N G 188.767 . AB=0;ABP=0;AC=2;AF=1;AN=2;AO=6;CIGAR=2X;DP=6;DPB=6;DPRA=0;EPP=16.0391;EPPR=0;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=0;NS=1;NUMALT=1;ODDS=8.76405;PAIRED=1;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=206;QR=0;RO=0;RPL=0;RPP=16.0391;RPPR=0;RPR=6;RUN=1;SAF=0;SAP=16.0391;SAR=6;SRF=0;SRP=0;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 1|1:6:0,6:0:0:6:206:-18.8767,-1.80618,0 .:.:.:.:.:.:.:. .:.:.:.:.:.:.:. dDocent_Contig_15043 149 . T C 658.571 . AB=0.0789474;ABP=61.5258;AC=0;AF=0;AN=6;AO=3;CIGAR=1X3M1X1M4I2M;DP=53;DPB=54.5;DPRA=0;EPP=9.52472;EPPR=55.1256;GTI=0;LEN=1;MEANALT=2.5;MQM=10;MQMR=60;NS=3;NUMALT=2;ODDS=0;PAIRED=0;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=30;QR=946;RO=24;RPL=0;RPP=9.52472;RPPR=55.1256;RPR=3;RUN=1;SAF=0;SAP=9.52472;SAR=3;SRF=0;SRP=55.1256;SRR=24;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|0:23:9,1,12:9:359:1,12:10,479:-37.0039,-39.3868,-68.6613,0,-29.497,-26.2057 0|0:15:11,0,3:11:428:0,3:0,112:-5.92837,-9.2397,-44.4404,0,-35.2719,-34.3688 0|0:15:4,2,9:4:159:2,9:20,357:-28.4477,-29.0146,-41.5039,0,-12.7199,-10.5985 dDocent_Contig_15044 17 . A G 423.476 . 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T A 518.727 . AB=0.297297;ABP=29.4201;AC=3;AF=0.5;AN=6;AO=22;CIGAR=1X;DP=74;DPB=74;DPRA=0;EPP=50.7827;EPPR=115.927;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=0.181818;PAIREDR=0.711538;PAO=0;PQA=0;PQR=0;PRO=0;QA=873;QR=2081;RO=52;RPL=0;RPP=50.7827;RPPR=115.927;RPR=22;RUN=1;SAF=22;SAP=50.7827;SAR=0;SRF=52;SRP=115.927;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:30:24,6:24:966:6:246:-13.4892,0,-78.2077 0/1:27:19,8:19:753:8:315:-20.5858,0,-59.9646 0/1:17:9,8:9:362:8:312:-23.3206,0,-27.8262 dDocent_Contig_15050 13 . C G 307.029 . 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AB=0.482759;ABP=3.23494;AC=2;AF=0.333333;AN=6;AO=43;CIGAR=1X2M1X;DP=101;DPB=101;DPRA=0;EPP=96.3836;EPPR=128.956;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=1687;QR=2260;RO=58;RPL=0;RPP=96.3836;RPPR=128.956;RPR=43;RUN=1;SAF=43;SAP=96.3836;SAR=0;SRF=58;SRP=128.956;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|1:35:18,17:18:710:17:673:-50.3684,0,-53.6949 0|0:14:13,1:13:497:1:36:0,-0.616145,-41.477 0|1:52:27,25:27:1053:25:978:-72.6742,0,-79.4165 dDocent_Contig_15052 9 . G T 289.143 . AB=0.191011;ABP=76.816;AC=2;AF=0.333333;AN=6;AO=18;CIGAR=1X;DP=127;DPB=127;DPRA=0;EPP=42.0968;EPPR=239.701;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=0.926606;PAO=0;PQA=0;PQR=0;PRO=0;QA=689;QR=4167;RO=109;RPL=0;RPP=42.0968;RPPR=239.701;RPR=18;RUN=1;SAF=18;SAP=42.0968;SAR=0;SRF=109;SRP=239.701;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:75:60,15:60:2312:15:574:-29.4227,0,-185.717 0/0:38:37,1:37:1387:1:39:0,-7.54258,-121.213 0/1:14:12,2:12:468:2:76:-3.00025,0,-38.2581 dDocent_Contig_15053 56 . G T 201.327 . AB=0.777778;ABP=9.04217;AC=1;AF=0.166667;AN=6;AO=8;CIGAR=1X;DP=83;DPB=83;DPRA=7.8;EPP=20.3821;EPPR=165.871;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=310;QR=2816;RO=75;RPL=8;RPP=20.3821;RPPR=165.871;RPR=0;RUN=1;SAF=8;SAP=20.3821;SAR=0;SRF=75;SRP=165.871;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:69:68,1:68:2554:1:40:0,-16.7754,-226.061 0/0:5:5,0:5:184:0:0:0,-1.50515,-16.9169 0/1:9:2,7:2:78:7:270:-21.9563,0,-4.6942 dDocent_Contig_15054 84 . T A 41.0205 . AB=0.25;ABP=9.52472;AC=1;AF=0.166667;AN=6;AO=3;CIGAR=1X;DP=33;DPB=33;DPRA=1.14286;EPP=9.52472;EPPR=68.1545;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=99;QR=1047;RO=30;RPL=3;RPP=9.52472;RPPR=68.1545;RPR=0;RUN=1;SAF=3;SAP=9.52472;SAR=0;SRF=30;SRP=68.1545;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:12:9,3:9:321:3:99:-5.62488,0,-25.6211 0/0:14:14,0:14:481:0:0:0,-4.21442,-43.6153 0/0:7:7,0:7:245:0:0:0,-2.10721,-22.3912 dDocent_Contig_15055 42 . G A 827.997 . AB=0.3;ABP=6.48466;AC=3;AF=0.5;AN=6;AO=27;CIGAR=1X;DP=54;DPB=54;DPRA=0;EPP=61.6401;EPPR=61.6401;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=1086;QR=1034;RO=27;RPL=0;RPP=61.6401;RPPR=61.6401;RPR=27;RUN=1;SAF=27;SAP=61.6401;SAR=0;SRF=27;SRP=61.6401;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 1/1:25:2,23:2:79:23:927:-76.2361,-0.0285058,0 0/0:19:18,1:18:699:1:40:0,-1.72389,-59.2345 0/1:10:7,3:7:256:3:119:-8.08509,0,-20.3738 dDocent_Contig_15056 12 . C T 157.132 . AB=0.296296;ABP=12.7417;AC=2;AF=0.333333;AN=6;AO=9;CIGAR=1X;DP=59;DPB=59;DPRA=0;EPP=22.5536;EPPR=111.584;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=333;QR=2004;RO=50;RPL=0;RPP=22.5536;RPPR=111.584;RPR=9;RUN=1;SAF=9;SAP=22.5536;SAR=0;SRF=50;SRP=111.584;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:32:31,1:31:1249:1:37:0,-5.93513,-108.98 0/1:10:6,4:6:234:4:148:-10.6717,0,-18.4192 0/1:17:13,4:13:521:4:148:-8.56446,0,-42.1198 dDocent_Contig_15057 23 . A C 438.839 . AB=0.315789;ABP=19.8106;AC=3;AF=0.5;AN=6;AO=18;CIGAR=1X;DP=57;DPB=57;DPRA=0;EPP=42.0968;EPPR=87.6977;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=727;QR=1559;RO=39;RPL=0;RPP=42.0968;RPPR=87.6977;RPR=18;RUN=1;SAF=18;SAP=42.0968;SAR=0;SRF=39;SRP=87.6977;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:13:10,3:10:392:3:122:-7.4591,0,-31.7195 0/1:9:4,5:4:162:5:204:-16.0348,0,-12.2577 0/1:35:25,10:25:1005:10:401:-25.9129,0,-80.2066 dDocent_Contig_15059 41 . T A 65.9413 . AB=0.142857;ABP=41.7866;AC=1;AF=0.166667;AN=6;AO=5;CIGAR=1X;DP=63;DPB=63;DPRA=2.5;EPP=13.8677;EPPR=128.956;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=0.896552;PAO=0;PQA=0;PQR=0;PRO=0;QA=203;QR=2326;RO=58;RPL=0;RPP=13.8677;RPPR=128.956;RPR=5;RUN=1;SAF=5;SAP=13.8677;SAR=0;SRF=58;SRP=128.956;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:35:30,5:30:1207:5:203:-8.11701,0,-98.3655 0/0:12:12,0:12:486:0:0:0,-3.61236,-44.0918 0/0:16:16,0:16:633:0:0:0,-4.81648,-57.3038 dDocent_Contig_15060 52 . G A 130.468 . AB=0.173077;ABP=51.2838;AC=2;AF=0.333333;AN=6;AO=9;CIGAR=1X;DP=57;DPB=57;DPRA=5.2;EPP=22.5536;EPPR=107.241;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=350;QR=1843;RO=48;RPL=9;RPP=22.5536;RPPR=107.241;RPR=0;RUN=1;SAF=9;SAP=22.5536;SAR=0;SRF=48;SRP=107.241;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:35:29,6:29:1125:6:244:-11.8028,0,-91.0023 0/0:5:5,0:5:170:0:0:0,-1.50515,-15.6229 0/1:17:14,3:14:548:3:106:-4.76659,0,-44.5433 dDocent_Contig_15061 24 . T A 71.4159 . AB=0.375;ABP=4.09604;AC=1;AF=0.166667;AN=6;AO=3;CIGAR=5M1X1M1D1M;DP=51;DPB=51;DPRA=0.372093;EPP=9.52472;EPPR=98.5551;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=2;ODDS=0;PAIRED=0;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=122;QR=1673;RO=44;RPL=0;RPP=9.52472;RPPR=98.5551;RPR=3;RUN=1;SAF=3;SAP=9.52472;SAR=0;SRF=44;SRP=98.5551;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|0:22:19,2,0:19:723:2,0:70,0:0,-0.0641011,-58.7356,-5.71957,-59.3376,-65.0299 0|0:21:20,1,0:20:758:1,0:37,0:0,-2.6238,-64.8499,-6.0206,-65.1509,-68.1775 0|1:8:5,0,3:5:192:0,3:0,122:-8.96425,-10.4694,-26.2165,0,-16.1449,-15.2418 dDocent_Contig_15062 9 . G A 542.747 . AB=0.0689655;ABP=49.8093;AC=3;AF=0.5;AN=6;AO=2;CIGAR=1X2M1X2M1X2M;DP=88;DPB=88;DPRA=0;EPP=7.35324;EPPR=63.8115;GTI=0;LEN=1;MEANALT=7;MQM=53;MQMR=60;NS=3;NUMALT=8;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=75;QR=1086;RO=28;RPL=0;RPP=7.35324;RPPR=63.8115;RPR=2;RUN=1;SAF=2;SAP=7.35324;SAR=0;SRF=28;SRP=63.8115;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|1:37:14,9,0,0,11,0,3,0,0:14:540:9,0,0,11,0,3,0,0:347,0,0,258,0,121,0,0:-24.3161,0,-41.7012,-28.5305,-44.4104,-72.9049,-28.5305,-44.4104,-72.9049,-72.9049,-11.1083,-26.9726,-55.4496,-55.4496,-52.1383,-28.5305,-44.4104,-72.9049,-72.9049,-55.4496,-72.9049,-18.5414,-34.4261,-62.9246,-62.9246,-45.4734,-62.9246,-62.0216,-28.5305,-44.4104,-72.9049,-72.9049,-55.4496,-72.9049,-62.9246,-72.9049,-28.5305,-44.4104,-72.9049,-72.9049,-55.4496,-72.9049,-62.9246,-72.9049,-72.9049 1|0:29:3,0,3,2,12,2,0,2,4:3:117:0,3,2,12,2,0,2,4:0,118,78,342,75,0,80,153:-25.6433,-26.5463,-36.1705,-16.8307,-26.4566,-25.5535,-20.1331,-29.7583,-20.0433,-29.1563,-2.09935,-11.7184,-2.00927,-5.30953,-8.10602,-20.4173,-30.0424,-20.3276,-23.6297,-5.59457,-29.4404,-26.5463,-36.1705,-26.4566,-29.7583,-11.7184,-30.0424,-36.1705,-19.95,-29.5753,-19.8602,-23.1624,-5.12593,-23.4466,-29.5753,-28.9732,-14.8146,-24.4406,-14.7248,-18.0273,0,-18.3116,-24.4406,-17.8442,-23.2365 0|1:22:11,1,0,0,8,0,0,0,2:11:429:1,0,0,8,0,0,0,2:37,0,0,198,0,0,0,75:-9.8357,-10.1102,-45.1454,-13.147,-45.4465,-48.4745,-13.147,-45.4465,-48.4745,-48.4745,0,-32.2511,-35.2757,-35.2757,-32.8675,-13.147,-45.4465,-48.4745,-48.4745,-35.2757,-48.4745,-13.147,-45.4465,-48.4745,-48.4745,-35.2757,-48.4745,-48.4745,-13.147,-45.4465,-48.4745,-48.4745,-35.2757,-48.4745,-48.4745,-48.4745,-6.97948,-39.2989,-42.3274,-42.3274,-29.1355,-42.3274,-42.3274,-42.3274,-41.7254 dDocent_Contig_15063 20 . C G 124.272 . AB=0.137255;ABP=61.2994;AC=3;AF=0.5;AN=6;AO=8;CIGAR=1X;DP=69;DPB=69;DPRA=1.52941;EPP=20.3821;EPPR=135.47;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=317;QR=2389;RO=61;RPL=0;RPP=20.3821;RPPR=135.47;RPR=8;RUN=1;SAF=8;SAP=20.3821;SAR=0;SRF=61;SRP=135.47;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:51:44,7:44:1711:7:276:-9.85482,0,-138.858 1/1:1:0,1:0:0:1:41:-4.09457,-0.30103,0 0/0:17:17,0:17:678:0:0:0,-5.11751,-61.3476 dDocent_Contig_15064 21 . T A 3759.46 . AB=0.75;ABP=26.8965;AC=4;AF=0.666667;AN=6;AO=110;CIGAR=2X;DP=121;DPB=121;DPRA=0;EPP=241.872;EPPR=26.8965;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=4355;QR=424;RO=11;RPL=0;RPP=241.872;RPPR=26.8965;RPR=110;RUN=1;SAF=110;SAP=241.872;SAR=0;SRF=11;SRP=26.8965;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 1|1:77:0,77:0:0:77:3056:-275.133,-23.1793,0 0|1:11:6,5:6:225:5:202:-15.2505,0,-17.2955 0|1:33:5,28:5:199:28:1097:-89.0855,0,-8.35474 dDocent_Contig_15066 57 . T G 283.661 . AB=0.589744;ABP=5.73856;AC=2;AF=0.5;AN=4;AO=23;CIGAR=2X;DP=39;DPB=39;DPRA=0;EPP=52.9542;EPPR=35.5824;GTI=0;LEN=1;MEANALT=1.5;MQM=21;MQMR=60;NS=2;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=895;QR=598;RO=15;RPL=0;RPP=52.9542;RPPR=35.5824;RPR=23;RUN=1;SAF=23;SAP=52.9542;SAR=0;SRF=15;SRP=35.5824;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|1:29:8,20:8:322:20:775:-29.1813,0,-20.689 0|1:10:7,3:7:276:3:120:-2.85434,0,-22.1974 .:.:.:.:.:.:.:. dDocent_Contig_15067 15 . A G 43.4789 . AB=0.0425532;ABP=259.29;AC=1;AF=0.166667;AN=6;AO=6;CIGAR=1M1X12M;DP=166;DPB=160.857;DPRA=0;EPP=16.0391;EPPR=272.273;GTI=0;LEN=1;MEANALT=5;MQM=60;MQMR=59.6129;NS=3;NUMALT=5;ODDS=0;PAIRED=1;PAIREDR=0.620968;PAO=0;PQA=0;PQR=0;PRO=0;QA=243;QR=4886;RO=124;RPL=0;RPP=16.0391;RPPR=272.273;RPR=6;RUN=1;SAF=6;SAP=16.0391;SAR=0;SRF=124;SRP=272.273;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|0:95:68,8,0,6,2,4:68:2671:8,0,6,2,4:318,0,96,81,164:-5.73643,0,-217.333,-26.2065,-219.741,-245.923,-21.0242,-214.518,-240.699,-238.893,-19.5218,-213.061,-239.244,-234.02,-238.642,-12.6574,-206.203,-232.386,-227.162,-225.706,-231.182 0|0:25:16,0,2,0,0,2:16:636:0,2,0,0,2:0,68,0,0,81:-1.88315,-6.69963,-58.4663,-4.6659,-56.3994,-55.7974,-6.69963,-58.4663,-56.3994,-58.4663,-6.69963,-58.4663,-56.3994,-58.4663,-58.4663,0,-51.7842,-49.7189,-51.7842,-51.7842,-51.1822 0|1:46:40,0,0,2,4,0:40:1579:0,0,2,4,0:0,0,29,162,0:-1.50947,-13.5507,-143.552,-13.5507,-143.552,-143.552,-12.1668,-142.084,-142.084,-141.482,0,-130.192,-130.192,-128.725,-128.988,-13.5507,-143.552,-143.552,-142.084,-130.192,-143.552 dDocent_Contig_15068 36 . A G 2460.02 . AB=0.642384;ABP=29.6001;AC=3;AF=0.5;AN=6;AO=97;CIGAR=1X1M;DP=151;DPB=151;DPRA=0;EPP=205.047;EPPR=98.5551;GTI=0;LEN=1;MEANALT=1.66667;MQM=48.5773;MQMR=60;NS=3;NUMALT=2;ODDS=0;PAIRED=0.896907;PAIREDR=0.931818;PAO=0;PQA=0;PQR=0;PRO=0;QA=3354;QR=1747;RO=44;RPL=0;RPP=213.643;RPPR=98.5551;RPR=97;RUN=1;SAF=96;SAP=205.047;SAR=1;SRF=44;SRP=98.5551;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|1:78:19,6,53:19:758:6,53:233,1777:-133.088,-119.656,-180.294,0,-43.2904,-46.4785 0|1:34:14,0,20:14:557:0,20:0,652:-47.4617,-51.6761,-97.5703,0,-46.2592,-40.2386 0|1:39:11,4,24:11:432:4,24:154,925:-70.9756,-61.6412,-95.9684,0,-22.8896,-28.3075 dDocent_Contig_15072 14 . G T 435.906 . AB=0.246753;ABP=45.9039;AC=2;AF=0.333333;AN=6;AO=20;CIGAR=1X;DP=105;DPB=105;DPRA=0;EPP=46.4397;EPPR=187.585;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=814;QR=3372;RO=85;RPL=0;RPP=46.4397;RPPR=187.585;RPR=20;RUN=1;SAF=20;SAP=46.4397;SAR=0;SRF=85;SRP=187.585;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:64:47,17:47:1867:17:693:-43.4321,0,-148.968 0/1:13:11,2:11:442:2:80:-3.6784,0,-36.222 0/0:28:27,1:27:1063:1:41:0,-4.33427,-91.8575 dDocent_Contig_15073 35 . T C 423.638 . AB=0.333333;ABP=15.3153;AC=3;AF=0.5;AN=6;AO=17;CIGAR=1X;DP=51;DPB=51;DPRA=0;EPP=39.9253;EPPR=76.8404;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=0.588235;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=690;QR=1368;RO=34;RPL=0;RPP=39.9253;RPPR=76.8404;RPR=17;RUN=1;SAF=17;SAP=39.9253;SAR=0;SRF=34;SRP=76.8404;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:30:20,10:20:804:10:406:-27.8695,0,-63.6469 0/1:5:3,2:3:119:2:81:-6.18058,0,-9.58986 0/1:16:11,5:11:445:5:203:-13.8366,0,-35.5898 dDocent_Contig_15075 199 . C T 31.8874 . AB=0.137931;ABP=36.0317;AC=2;AF=0.333333;AN=6;AO=4;CIGAR=1X;DP=75;DPB=75;DPRA=0.315217;EPP=11.6962;EPPR=157.185;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=1.73472e-18;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=156;QR=2450;RO=71;RPL=4;RPP=11.6962;RPPR=157.185;RPR=0;RUN=1;SAF=0;SAP=11.6962;SAR=4;SRF=0;SRP=157.185;SRR=71;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:46:46,0:46:1586:0:0:0,-13.8474,-143.031 0/1:8:6,2:6:201:2:78:-4.99523,0,-16.011 0/1:21:19,2:19:663:2:78:-1.08184,0,-53.6742 dDocent_Contig_15077 23 . A T 359.792 . AB=0.0319489;ABP=598.597;AC=2;AF=0.333334;AN=6;AO=10;CIGAR=1X1M1D7M;DP=313;DPB=307.4;DPRA=0;EPP=24.725;EPPR=558.907;GTI=0;LEN=1;MEANALT=3.66667;MQM=59.4;MQMR=60;NS=3;NUMALT=3;ODDS=0;PAIRED=0;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=408;QR=10057;RO=256;RPL=0;RPP=24.725;RPPR=558.907;RPR=10;RUN=1;SAF=10;SAP=24.725;SAR=0;SRF=256;SRP=558.907;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|0:245:206,2,3,28:206:8120:2,3,28:79,122,1080:-25.4732,-81.0045,-748.459,-77.4205,-738.998,-744.575,0,-661.562,-657.979,-659.613 0|1:32:18,6,4,3:18:688:6,4,3:237,163,111:-14.0231,0,-54.6411,-5.98636,-42.9954,-61.2316,-11.067,-48.0658,-54.0538,-66.601 0|1:36:32,0,3,1:32:1249:0,3,1:0,123,31:-0.60182,-10.2348,-112.915,0,-102.775,-101.872,-8.04884,-110.7,-100.56,-110.399 dDocent_Contig_15080 143 . A G 2028.85 . AB=0.607407;ABP=16.5378;AC=3;AF=0.5;AN=6;AO=82;CIGAR=1X;DP=135;DPB=135;DPRA=0;EPP=181.071;EPPR=118.098;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=6.93889e-18;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=2757;QR=1804;RO=53;RPL=0;RPP=181.071;RPPR=118.098;RPR=82;RUN=1;SAF=0;SAP=181.071;SAR=82;SRF=0;SRP=118.098;SRR=53;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:74:35,39:35:1178:39:1312:-96.1,0,-84.0437 0/1:18:10,8:10:348:8:261:-18.3906,0,-26.2375 0/1:43:8,35:8:278:35:1184:-93.9175,0,-12.4137 dDocent_Contig_15081 28 . T C 98.9751 . AB=0.25;ABP=13.8677;AC=2;AF=0.333333;AN=6;AO=5;CIGAR=1X;DP=35;DPB=35;DPRA=0.666667;EPP=13.8677;EPPR=68.1545;GTI=0;LEN=1;MEANALT=1;MQM=44;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=202;QR=1207;RO=30;RPL=0;RPP=13.8677;RPPR=68.1545;RPR=5;RUN=1;SAF=5;SAP=13.8677;SAR=0;SRF=30;SRP=68.1545;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:15:15,0:15:605:0:0:0,-4.51545,-54.7889 0/1:9:5,4:5:204:4:161:-11.7175,0,-16.0348 0/1:11:10,1:10:398:1:41:-0.434788,0,-32.8668 dDocent_Contig_15084 58 . C T 229.779 . AB=0.275;ABP=20.5992;AC=2;AF=0.333333;AN=6;AO=12;CIGAR=1X;DP=59;DPB=59;DPRA=0;EPP=29.068;EPPR=105.07;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=456;QR=1772;RO=47;RPL=12;RPP=29.068;RPPR=105.07;RPR=0;RUN=1;SAF=12;SAP=29.068;SAR=0;SRF=47;SRP=105.07;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:36:27,9:27:1002:9:341:-20.2072,0,-79.6526 0/1:4:2,2:2:80:2:79:-6.29351,0,-6.38745 0/0:19:18,1:18:690:1:36:0,-2.12129,-58.8353 dDocent_Contig_15085 97 . T C 290.549 . AB=0.521739;ABP=3.10471;AC=1;AF=0.166667;AN=6;AO=12;CIGAR=1X;DP=32;DPB=32;DPRA=5.11111;EPP=29.068;EPPR=46.4397;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=413;QR=675;RO=20;RPL=12;RPP=29.068;RPPR=46.4397;RPR=0;RUN=1;SAF=12;SAP=29.068;SAR=0;SRF=20;SRP=46.4397;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:23:11,12:11:369:12:413:-30.5771,0,-26.6109 0/0:1:1,0:1:35:0:0:0,-0.30103,-3.49863 0/0:8:8,0:8:271:0:0:0,-2.40824,-24.7209 dDocent_Contig_15089 20 . T G 2466.04 . AB=0.83871;ABP=95.6831;AC=3;AF=0.5;AN=6;AO=78;CIGAR=1X;DP=93;DPB=93;DPRA=0;EPP=172.385;EPPR=35.5824;GTI=0;LEN=1;MEANALT=1;MQM=58.1538;MQMR=60;NS=3;NUMALT=1;ODDS=6.93889e-18;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=3096;QR=591;RO=15;RPL=0;RPP=172.385;RPPR=35.5824;RPR=78;RUN=1;SAF=78;SAP=172.385;SAR=0;SRF=15;SRP=35.5824;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:53:6,47:6:239:47:1869:-152.359,0,-5.9297 0/1:9:1,8:1:39:8:296:-24.2643,0,-1.18729 0/1:31:8,23:8:313:23:931:-74.6683,0,-19.2021 dDocent_Contig_15090 31 . A T 49.345 . AB=0.131579;ABP=47.8112;AC=1;AF=0.166667;AN=6;AO=8;CIGAR=1X;DP=190;DPB=190;DPRA=0.604651;EPP=20.3821;EPPR=398.218;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=3.46945e-18;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=314;QR=7184;RO=182;RPL=0;RPP=20.3821;RPPR=398.218;RPR=8;RUN=1;SAF=8;SAP=20.3821;SAR=0;SRF=182;SRP=398.218;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:86:86,0:86:3361:0:0:0,-25.8886,-302.556 0/1:38:33,5:33:1304:5:198:-6.7584,0,-106.19 0/0:66:63,3:63:2519:3:116:0,-9.05096,-216.037 dDocent_Contig_15091 7 . A T 200.131 . AB=0.192982;ABP=49.6779;AC=1;AF=0.166667;AN=6;AO=12;CIGAR=1X;DP=138;DPB=138;DPRA=1.87931;EPP=29.068;EPPR=276.616;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=3.46945e-18;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=465;QR=4806;RO=126;RPL=0;RPP=29.068;RPPR=276.616;RPR=12;RUN=1;SAF=12;SAP=29.068;SAR=0;SRF=126;SRP=276.616;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:57:46,11:46:1784:11:426:-21.536,0,-143.652 0/0:29:29,0:29:1083:0:0:0,-8.72987,-97.7759 0/0:52:51,1:51:1939:1:39:0,-11.757,-170.859 dDocent_Contig_15092 60 . T G 729.94 . AB=0.270492;ABP=58.8278;AC=3;AF=0.5;AN=6;AO=33;CIGAR=1X;DP=122;DPB=122;DPRA=0;EPP=74.6689;EPPR=196.271;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=1269;QR=3530;RO=89;RPL=33;RPP=74.6689;RPPR=196.271;RPR=0;RUN=1;SAF=33;SAP=74.6689;SAR=0;SRF=89;SRP=196.271;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:75:59,16:59:2328:16:605:-32.1922,0,-187.108 0/1:9:7,2:7:277:2:77:-4.59987,0,-22.5891 0/1:38:23,15:23:925:15:587:-41.7245,0,-72.1137 dDocent_Contig_15093 114 . C T 192.753 . AB=0.232143;ABP=37.909;AC=3;AF=0.5;AN=6;AO=13;CIGAR=1X2M1X;DP=56;DPB=56;DPRA=0;EPP=31.2394;EPPR=94.2121;GTI=0;LEN=1;MEANALT=1.33333;MQM=60;MQMR=58.8095;NS=3;NUMALT=1;ODDS=3.46945e-18;PAIRED=1;PAIREDR=0.833333;PAO=0;PQA=0;PQR=0;PRO=0;QA=445;QR=1364;RO=42;RPL=0;RPP=31.2394;RPPR=94.2121;RPR=13;RUN=1;SAF=0;SAP=31.2394;SAR=13;SRF=0;SRP=94.2121;SRR=42;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|1:28:19,8:19:637:8:273:-16.4173,0,-49.1615 0|1:7:6,1:6:187:1:35:-1.39142,0,-15.0301 0|1:21:17,4:17:540:4:137:-6.34658,0,-42.4313 dDocent_Contig_15094 24 . T G 338.944 . AB=0.424242;ABP=4.65535;AC=3;AF=0.5;AN=6;AO=14;CIGAR=1X;DP=33;DPB=33;DPRA=0;EPP=33.4109;EPPR=44.2683;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=536;QR=711;RO=19;RPL=0;RPP=33.4109;RPPR=44.2683;RPR=14;RUN=1;SAF=14;SAP=33.4109;SAR=0;SRF=19;SRP=44.2683;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:10:7,3:7:263:3:120:-8.1776,0,-21.0174 0/1:7:3,4:3:105:4:152:-11.9408,0,-7.68793 0/1:16:9,7:9:343:7:264:-19.2988,0,-26.411 dDocent_Contig_15095 31 . C T 437.902 . AB=0.136546;ABP=288.712;AC=3;AF=0.5;AN=6;AO=34;CIGAR=1X;DP=249;DPB=249;DPRA=0;EPP=76.8404;EPPR=467.705;GTI=0;LEN=1;MEANALT=1.33333;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=1367;QR=8559;RO=214;RPL=0;RPP=76.8404;RPPR=467.705;RPR=34;RUN=1;SAF=34;SAP=76.8404;SAR=0;SRF=214;SRP=467.705;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:99:85,14:85:3382:14:568:-21.6604,0,-274.624 0/1:89:77,11:77:3094:11:444:-13.7086,0,-251.952 0/1:61:52,9:52:2083:9:355:-13.9441,0,-169.285 dDocent_Contig_15096 71 . C A 30.7754 . AB=0.25;ABP=7.35324;AC=1;AF=0.166667;AN=6;AO=2;CIGAR=1X;DP=21;DPB=21;DPRA=1.23077;EPP=7.35324;EPPR=44.2683;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=77;QR=742;RO=19;RPL=2;RPP=7.35324;RPPR=44.2683;RPR=0;RUN=1;SAF=2;SAP=7.35324;SAR=0;SRF=19;SRP=44.2683;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:10:10,0:10:387:0:0:0,-3.0103,-35.181 0/1:8:6,2:6:235:2:77:-4.9009,0,-19.1134 0/0:3:3,0:3:120:0:0:0,-0.90309,-11.1877 dDocent_Contig_15097 16 . G A 113.853 . AB=0.162791;ABP=45.4803;AC=1;AF=0.166667;AN=6;AO=7;CIGAR=1X;DP=273;DPB=273;DPRA=0.373913;EPP=18.2106;EPPR=505.094;GTI=0;LEN=1;MEANALT=1;MQM=56;MQMR=47.8383;NS=3;NUMALT=1;ODDS=0;PAIRED=0;PAIREDR=0.443609;PAO=0;PQA=0;PQR=0;PRO=0;QA=287;QR=10651;RO=266;RPL=0;RPP=18.2106;RPPR=580.622;RPR=7;RUN=1;SAF=7;SAP=18.2106;SAR=0;SRF=257;SRP=505.094;SRR=9;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:141:141,0:141:5644:0:0:0,-42.4452,-431.991 0/1:43:36,7:36:1452:7:287:-13.2092,0,-107.008 0/0:89:89,0:89:3555:0:0:0,-26.7917,-282.079 dDocent_Contig_15099 21 . A G 276.978 . AB=0.285714;ABP=19.7617;AC=2;AF=0.333333;AN=6;AO=13;CIGAR=1X;DP=68;DPB=68;DPRA=0;EPP=31.2394;EPPR=122.441;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=520;QR=2165;RO=55;RPL=0;RPP=31.2394;RPPR=122.441;RPR=13;RUN=1;SAF=13;SAP=31.2394;SAR=0;SRF=55;SRP=122.441;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:26:25,1:25:991:1:41:0,-3.73221,-85.3952 0/1:10:8,2:8:308:2:81:-4.67543,0,-25.0677 0/1:32:22,10:22:866:10:398:-26.545,0,-68.6175 dDocent_Contig_15100 13 . A T 123.319 . AB=0.145833;ABP=55.3066;AC=3;AF=0.5;AN=6;AO=7;CIGAR=1X8M;DP=48;DPB=48;DPRA=0;EPP=18.2106;EPPR=79.0118;GTI=0;LEN=1;MEANALT=2;MQM=60;MQMR=60;NS=3;NUMALT=3;ODDS=0;PAIRED=1;PAIREDR=0.571429;PAO=0;PQA=0;PQR=0;PRO=0;QA=271;QR=1389;RO=35;RPL=0;RPP=18.2106;RPPR=79.0118;RPR=7;RUN=1;SAF=7;SAP=18.2106;SAR=0;SRF=35;SRP=79.0118;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|1:18:13,0,3,1:13:517:0,3,1:0,110,39:-5.04328,-8.95667,-51.5525,0,-42.6092,-41.7061,-5.74309,-48.3465,-39.4034,-48.0454 0|1:11:8,0,0,3:8:314:0,0,3:0,0,114:-7.32089,-9.72913,-35.5629,-9.72913,-35.5629,-35.5629,0,-26.2169,-26.2169,-25.3138 0|1:19:14,2,0,3:14:558:2,0,3:80,0,118:-5.4903,-3.18012,-48.5349,-9.70472,-49.1369,-55.6602,0,-39.4314,-45.9545,-45.0514 dDocent_Contig_15101 19 . T A 75.776 . AB=0.307692;ABP=7.18621;AC=2;AF=0.333333;AN=6;AO=5;CIGAR=1X3M1X3M1X;DP=28;DPB=28;DPRA=0;EPP=13.8677;EPPR=50.7827;GTI=0;LEN=1;MEANALT=1.33333;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=0;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=197;QR=845;RO=22;RPL=0;RPP=13.8677;RPPR=50.7827;RPR=5;RUN=1;SAF=5;SAP=13.8677;SAR=0;SRF=22;SRP=50.7827;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|0:15:14,1:14:530:1:38:0,-0.718181,-44.24 0|1:11:7,3:7:275:3:120:-7.7927,0,-21.7272 0|1:2:1,1:1:40:1:39:-3.2945,0,-3.39362 dDocent_Contig_15102 16 . G A 483.456 . AB=0.391304;ABP=7.73089;AC=2;AF=0.333333;AN=6;AO=18;CIGAR=1X;DP=50;DPB=50;DPRA=5.75;EPP=42.0968;EPPR=72.4974;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=722;QR=1250;RO=32;RPL=0;RPP=42.0968;RPPR=72.4974;RPR=18;RUN=1;SAF=18;SAP=42.0968;SAR=0;SRF=32;SRP=72.4974;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:38:22,16:22:854:16:640:-46.4969,0,-65.7186 0/0:4:4,0:4:151:0:0:0,-1.20412,-13.9544 0/1:8:6,2:6:245:2:82:-5.37144,0,-20.0212 dDocent_Contig_15103 8 . A G 175.244 . AB=0.25;ABP=22.5536;AC=2;AF=0.333333;AN=6;AO=9;CIGAR=1X;DP=38;DPB=38;DPRA=9;EPP=22.5536;EPPR=65.983;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=346;QR=1121;RO=29;RPL=0;RPP=22.5536;RPPR=65.983;RPR=9;RUN=1;SAF=9;SAP=22.5536;SAR=0;SRF=29;SRP=65.983;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:26:21,5:21:811:5:191:-9.73174,0,-65.4884 0/0:2:2,0:2:78:0:0:0,-0.60206,-7.40347 0/1:10:6,4:6:232:4:155:-11.3151,0,-18.2388 dDocent_Contig_15104 65 . G T 452.904 . AB=0.392857;ABP=5.80219;AC=2;AF=0.333334;AN=6;AO=11;CIGAR=1M1X;DP=63;DPB=63;DPRA=2.33333;EPP=26.8965;EPPR=81.1833;GTI=0;LEN=1;MEANALT=4;MQM=60;MQMR=60;NS=3;NUMALT=4;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=433;QR=1408;RO=36;RPL=11;RPP=26.8965;RPPR=81.1833;RPR=0;RUN=1;SAF=11;SAP=26.8965;SAR=0;SRF=36;SRP=81.1833;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|1:28:11,1,11,2,3:11:439:1,11,2,3:30,433,79,66:-32.3768,-33.2928,-69.1642,0,-33.8387,-32.9225,-29.1814,-62.9626,-29.7277,-64.7563,-31.495,-65.2603,-32.0415,-61.1538,-66.7519 0|0:12:12,0,0,0,0:12:454:0,0,0,0:0,0,0,0:0,-3.61236,-41.1999,-3.61236,-41.1999,-41.1999,-3.61236,-41.1999,-41.1999,-41.1999,-3.61236,-41.1999,-41.1999,-41.1999,-41.1999 0|1:23:13,7,0,3,0:13:515:7,0,3,0:250,0,121,0:-16.4366,0,-40.2725,-20.35,-42.3797,-62.7496,-10.3619,-32.4041,-52.7726,-51.8695,-20.35,-42.3797,-62.7496,-52.7726,-62.7496 dDocent_Contig_15105 20 . T C 696.546 . AB=0.346154;ABP=19.0458;AC=3;AF=0.5;AN=6;AO=27;CIGAR=1X2M1X2M1X;DP=78;DPB=78;DPRA=0;EPP=61.6401;EPPR=113.755;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=1084;QR=2002;RO=51;RPL=0;RPP=61.6401;RPPR=113.755;RPR=27;RUN=1;SAF=27;SAP=61.6401;SAR=0;SRF=51;SRP=113.755;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|1:45:30,15:30:1168:15:600:-40.7943,0,-91.8579 0|1:6:2,4:2:75:4:163:-13.2522,0,-5.31392 0|1:27:19,8:19:759:8:321:-21.1309,0,-60.5064 dDocent_Contig_15107 7 . A G 71.2268 . AB=0.363636;ABP=4.78696;AC=2;AF=0.333333;AN=6;AO=4;CIGAR=1X1M1X;DP=19;DPB=19;DPRA=0.6875;EPP=11.6962;EPPR=33.4109;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=147;QR=533;RO=14;RPL=0;RPP=11.6962;RPPR=33.4109;RPR=4;RUN=1;SAF=4;SAP=11.6962;SAR=0;SRF=14;SRP=33.4109;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|0:8:7,0:7:262:0:0:0,-2.10721,-23.5935 0|1:4:2,2:2:77:2:71:-5.53778,0,-6.10502 0|1:7:5,2:5:194:2:76:-5.1076,0,-15.7256 dDocent_Contig_15108 26 . T C 177.461 . AB=0.266667;ABP=17.1973;AC=2;AF=0.333333;AN=6;AO=8;CIGAR=1X;DP=35;DPB=35;DPRA=3;EPP=20.3821;EPPR=61.6401;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=328;QR=1068;RO=27;RPL=0;RPP=20.3821;RPPR=61.6401;RPR=8;RUN=1;SAF=8;SAP=20.3821;SAR=0;SRF=27;SRP=61.6401;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:21:17,4:17:669:4:164:-8.82827,0,-54.215 0/1:9:5,4:5:204:4:164:-12.4406,0,-16.0348 0/0:5:5,0:5:195:0:0:0,-1.50515,-17.9215 dDocent_Contig_15109 33 . C T 60.6172 . AB=0.181818;ABP=22.3561;AC=1;AF=0.166667;AN=6;AO=10;CIGAR=1X;DP=136;DPB=136;DPRA=0;EPP=24.725;EPPR=276.616;GTI=0;LEN=1;MEANALT=1;MQM=56.2;MQMR=58.5714;NS=3;NUMALT=1;ODDS=0;PAIRED=0;PAIREDR=0.698413;PAO=0;PQA=0;PQR=0;PRO=0;QA=390;QR=5041;RO=126;RPL=0;RPP=24.725;RPPR=276.616;RPR=10;RUN=1;SAF=10;SAP=24.725;SAR=0;SRF=126;SRP=276.616;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:71:66,5:66:2639:5:193:0,-3.6341,-212.856 0/1:22:18,4:18:716:4:157:-7.88563,0,-58.1369 0/0:43:42,1:42:1686:1:40:0,-10.7511,-149.425 dDocent_Contig_15110 44 . T A 30.7312 . AB=0.106383;ABP=66.2602;AC=1;AF=0.166667;AN=6;AO=8;CIGAR=1X;DP=107;DPB=107;DPRA=3.06667;EPP=20.3821;EPPR=217.986;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=3.46945e-18;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=326;QR=3961;RO=99;RPL=0;RPP=20.3821;RPPR=217.986;RPR=8;RUN=1;SAF=8;SAP=20.3821;SAR=0;SRF=99;SRP=217.986;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:47:42,5:42:1672:5:204:-4.59562,0,-136.558 0/0:15:15,0:15:594:0:0:0,-4.51545,-53.796 0/0:45:42,3:42:1695:3:122:0,-2.17386,-141.399 dDocent_Contig_15111 20 . C A 190.246 . AB=0.5;ABP=3.0103;AC=2;AF=0.333333;AN=6;AO=8;CIGAR=3X;DP=22;DPB=22;DPRA=1.33333;EPP=20.3821;EPPR=33.4109;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=0.625;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=296;QR=541;RO=14;RPL=0;RPP=20.3821;RPPR=33.4109;RPR=8;RUN=1;SAF=8;SAP=20.3821;SAR=0;SRF=14;SRP=33.4109;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|1:11:6,5:6:223:5:185:-13.6987,0,-17.1105 0|0:6:6,0:6:241:0:0:0,-1.80618,-22.0663 0|1:5:2,3:2:77:3:111:-8.84877,0,-5.80305 dDocent_Contig_15113 9 . C T 255.048 . AB=0.151515;ABP=142.248;AC=3;AF=0.5;AN=6;AO=20;CIGAR=1X;DP=132;DPB=132;DPRA=0;EPP=46.4397;EPPR=246.215;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=6.93889e-18;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=774;QR=4310;RO=112;RPL=0;RPP=46.4397;RPPR=246.215;RPR=20;RUN=1;SAF=20;SAP=46.4397;SAR=0;SRF=112;SRP=246.215;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:78:69,9:69:2650:9:349:-8.29055,0,-215.209 0/1:35:31,4:31:1205:4:154:-3.69741,0,-98.2089 0/1:19:12,7:12:455:7:271:-19.0369,0,-35.5777 dDocent_Contig_15115 114 . G A 306.038 . AB=0.125;ABP=22.5536;AC=0;AF=0;AN=6;AO=2;CIGAR=2X;DP=40;DPB=40;DPRA=0;EPP=7.35324;EPPR=52.9542;GTI=0;LEN=1;MEANALT=2;MQM=60;MQMR=60;NS=3;NUMALT=2;ODDS=3.46945e-18;PAIRED=0;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=70;QR=801;RO=23;RPL=0;RPP=7.35324;RPPR=52.9542;RPR=2;RUN=1;SAF=0;SAP=7.35324;SAR=2;SRF=0;SRP=52.9542;SRR=23;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|0:16:10,2,4:10:354:2,4:70,137:-8.10627,-5.4186,-33.6606,0,-23.1444,-27.6351 0|0:8:2,0,6:2:71:0,6:0,210:-16.8342,-17.4363,-23.2227,0,-6.14,-4.33382 0|0:16:11,0,5:11:376:0,5:0,174:-11.1855,-14.4968,-45.0074,0,-30.8566,-29.3514 dDocent_Contig_15117 39 . A T 296.239 . AB=0.351351;ABP=10.1116;AC=3;AF=0.5;AN=6;AO=13;CIGAR=1X;DP=37;DPB=37;DPRA=0;EPP=31.2394;EPPR=55.1256;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=502;QR=969;RO=24;RPL=0;RPP=31.2394;RPPR=55.1256;RPR=13;RUN=1;SAF=13;SAP=31.2394;SAR=0;SRF=24;SRP=55.1256;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:15:11,4:11:446:4:144:-8.79236,0,-35.9797 0/1:7:4,3:4:157:3:118:-8.8953,0,-12.4007 0/1:15:9,6:9:366:6:240:-17.4591,0,-28.7897 dDocent_Contig_15119 25 . A G 1446.6 . AB=0.105263;ABP=105.87;AC=0;AF=0;AN=4;AO=8;CIGAR=1X3M1D1M;DP=76;DPB=66.5;DPRA=0;EPP=20.3821;EPPR=44.2683;GTI=0;LEN=1;MEANALT=2;MQM=60;MQMR=60;NS=2;NUMALT=2;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=320;QR=742;RO=19;RPL=0;RPP=20.3821;RPPR=44.2683;RPR=8;RUN=1;SAF=8;SAP=20.3821;SAR=0;SRF=19;SRP=44.2683;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|0:44:7,3,34:7:269:3,34:118,1291:-103.723,-96.1227,-117.303,0,-12.3663,-11.8409 .:.:.:.:.:.:.:. 0|0:32:12,5,15:12:473:5,15:202,587:-44.6356,-31.5914,-69.0014,0,-22.2507,-34.3916 dDocent_Contig_15120 127 . T C 97.4571 . AB=0.8;ABP=6.91895;AC=1;AF=0.166667;AN=6;AO=4;CIGAR=1X;DP=27;DPB=27;DPRA=0.454545;EPP=11.6962;EPPR=52.9542;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=0.869565;PAO=0;PQA=0;PQR=0;PRO=0;QA=140;QR=779;RO=23;RPL=0;RPP=11.6962;RPPR=52.9542;RPR=4;RUN=1;SAF=0;SAP=11.6962;SAR=4;SRF=0;SRP=52.9542;SRR=23;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:12:12,0:12:398:0:0:0,-3.61236,-36.1398 0/0:10:10,0:10:346:0:0:0,-3.0103,-31.4744 0/1:5:1,4:1:35:4:140:-11.4398,0,-1.99348 dDocent_Contig_15121 27 . T C 1776.82 . AB=0.617021;ABP=14.1911;AC=3;AF=0.5;AN=6;AO=58;CIGAR=1X;DP=94;DPB=94;DPRA=0;EPP=128.956;EPPR=79.0118;GTI=0;LEN=1;MEANALT=1.33333;MQM=60;MQMR=57.7143;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=0.942857;PAO=0;PQA=0;PQR=0;PRO=0;QA=2339;QR=1387;RO=35;RPL=0;RPP=128.956;RPPR=79.0118;RPR=58;RUN=1;SAF=58;SAP=128.956;SAR=0;SRF=35;SRP=79.0118;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:46:13,32:13:529:32:1300:-103.459,0,-34.1493 0/1:8:3,5:3:108:5:195:-15.5136,0,-6.60773 0/1:40:19,21:19:750:21:844:-64.2325,0,-53.8778 dDocent_Contig_15124 13 . T A 167.493 . AB=0.266667;ABP=17.1973;AC=3;AF=0.5;AN=6;AO=8;CIGAR=1X;DP=30;DPB=30;DPRA=0;EPP=20.3821;EPPR=50.7827;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=315;QR=888;RO=22;RPL=0;RPP=20.3821;RPPR=50.7827;RPR=8;RUN=1;SAF=8;SAP=20.3821;SAR=0;SRF=22;SRP=50.7827;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:12:11,1:11:446:1:38:-0.184909,0,-36.8832 0/1:10:8,2:8:319:2:77:-4.2979,0,-26.064 0/1:8:3,5:3:123:5:200:-15.9713,0,-9.05655 dDocent_Contig_15127 12 . G A 69.2866 . AB=0.222222;ABP=15.074;AC=1;AF=0.166667;AN=6;AO=6;CIGAR=4X;DP=93;DPB=93;DPRA=0;EPP=16.0391;EPPR=187.585;GTI=0;LEN=1;MEANALT=1.66667;MQM=53.1667;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=0;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=237;QR=3316;RO=85;RPL=0;RPP=16.0391;RPPR=187.585;RPR=6;RUN=1;SAF=6;SAP=16.0391;SAR=0;SRF=85;SRP=187.585;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|0:56:54,1:54:2127:1:41:0,-12.7369,-187.708 0|1:18:13,4:13:497:4:155:-8.75254,0,-39.5483 0|0:19:18,1:18:692:1:41:0,-1.64081,-58.527 dDocent_Contig_15128 45 . T C 126.612 . AB=0.13913;ABP=133.091;AC=3;AF=0.5;AN=6;AO=16;CIGAR=1X;DP=115;DPB=115;DPRA=0;EPP=37.7539;EPPR=217.986;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=6.93889e-18;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=574;QR=3559;RO=99;RPL=0;RPP=37.7539;RPPR=217.986;RPR=16;RUN=1;SAF=16;SAP=37.7539;SAR=0;SRF=99;SRP=217.986;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:65:58,7:58:2084:7:277:-5.7325,0,-168.222 0/1:6:5,1:5:184:1:41:-2.28839,0,-15.1114 0/1:44:36,8:36:1291:8:256:-10.0944,0,-103.232 dDocent_Contig_15129 29 . T A 155.733 . AB=0.195122;ABP=36.112;AC=1;AF=0.166667;AN=6;AO=9;CIGAR=1X;DP=71;DPB=71;DPRA=2.72727;EPP=14.8328;EPPR=77.1206;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=59.3065;NS=3;NUMALT=1;ODDS=0;PAIRED=0.777778;PAIREDR=0.790323;PAO=0;PQA=0;PQR=0;PRO=0;QA=363;QR=2484;RO=62;RPL=0;RPP=22.5536;RPPR=137.642;RPR=9;RUN=1;SAF=8;SAP=14.8328;SAR=1;SRF=54;SRP=77.1206;SRR=8;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:41:33,8:33:1328:8:323:-17.0961,0,-107.439 0/0:19:18,1:18:719:1:40:0,-1.72389,-60.2266 0/0:11:11,0:11:437:0:0:0,-3.31133,-39.6838 dDocent_Contig_15130 46 . C G 1010.42 . AB=0.486486;ABP=3.12768;AC=3;AF=0.5;AN=6;AO=36;CIGAR=1X;DP=74;DPB=74;DPRA=0;EPP=81.1833;EPPR=85.5263;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=1420;QR=1498;RO=38;RPL=0;RPP=81.1833;RPPR=85.5263;RPR=36;RUN=1;SAF=36;SAP=81.1833;SAR=0;SRF=38;SRP=85.5263;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:32:22,10:22:856:10:382:-25.0918,0,-67.716 0/1:14:4,10:4:157:10:406:-32.686,0,-10.294 0/1:28:12,16:12:485:16:632:-48.7869,0,-35.5715 dDocent_Contig_15131 30 . C A 183.438 . AB=0.238095;ABP=28.0339;AC=3;AF=0.5;AN=6;AO=10;CIGAR=1X;DP=42;DPB=42;DPRA=0;EPP=24.725;EPPR=72.4974;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=0.90625;PAO=0;PQA=0;PQR=0;PRO=0;QA=393;QR=1275;RO=32;RPL=0;RPP=24.725;RPPR=72.4974;RPR=10;RUN=1;SAF=10;SAP=24.725;SAR=0;SRF=32;SRP=72.4974;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:20:15,5:15:590:5:200:-12.3589,0,-47.4135 0/1:12:9,3:9:357:3:111:-6.73813,0,-28.8789 0/1:10:8,2:8:328:2:82:-4.76938,0,-26.88 dDocent_Contig_15132 24 . T G 48.2688 . AB=0.111111;ABP=73.9451;AC=2;AF=0.333333;AN=6;AO=6;CIGAR=1X;DP=66;DPB=66;DPRA=2.25;EPP=16.0391;EPPR=133.299;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=59.55;NS=3;NUMALT=1;ODDS=3.46945e-18;PAIRED=1;PAIREDR=0.916667;PAO=0;PQA=0;PQR=0;PRO=0;QA=245;QR=2401;RO=60;RPL=0;RPP=16.0391;RPPR=133.299;RPR=6;RUN=1;SAF=6;SAP=16.0391;SAR=0;SRF=60;SRP=133.299;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:17:14,3:14:553:3:123:-6.34728,0,-44.9899 0/1:37:34,3:34:1364:3:122:-0.234383,0,-111.873 0/0:12:12,0:12:484:0:0:0,-3.61236,-43.1314 dDocent_Contig_15133 26 . G C 568.235 . AB=0.366667;ABP=12.2752;AC=3;AF=0.5;AN=6;AO=22;CIGAR=1X;DP=60;DPB=60;DPRA=0;EPP=50.7827;EPPR=85.5263;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=881;QR=1513;RO=38;RPL=0;RPP=50.7827;RPPR=85.5263;RPR=22;RUN=1;SAF=22;SAP=50.7827;SAR=0;SRF=38;SRP=85.5263;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:26:10,16:10:401:16:638:-49.9249,0,-28.6222 0/1:21:17,4:17:671:4:161:-8.55327,0,-54.3977 0/1:13:11,2:11:441:2:82:-3.86629,0,-36.1325 dDocent_Contig_15134 9 . C T 37.73 . AB=0.176471;ABP=18.4661;AC=1;AF=0.166667;AN=6;AO=3;CIGAR=1X1M1X;DP=43;DPB=43;DPRA=1.30769;EPP=9.52472;EPPR=87.6977;GTI=0;LEN=1;MEANALT=2;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=116;QR=1514;RO=39;RPL=0;RPP=9.52472;RPPR=87.6977;RPR=3;RUN=1;SAF=3;SAP=9.52472;SAR=0;SRF=39;SRP=87.6977;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|0:16:16,0:16:613:0:0:0,-4.81648,-55.5046 0|0:10:10,0:10:396:0:0:0,-3.0103,-35.9999 0|1:17:13,3:13:505:3:116:-5.59684,0,-40.5682 dDocent_Contig_15136 23 . T A 292.273 . AB=0.5;ABP=3.0103;AC=3;AF=0.5;AN=6;AO=3;CIGAR=1X1M;DP=31;DPB=31;DPRA=0;EPP=9.52472;EPPR=42.0968;GTI=0;LEN=1;MEANALT=2;MQM=60;MQMR=60;NS=3;NUMALT=2;ODDS=3.46945e-18;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=123;QR=717;RO=18;RPL=0;RPP=9.52472;RPPR=42.0968;RPR=3;RUN=1;SAF=3;SAP=9.52472;SAR=0;SRF=18;SRP=42.0968;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|1:6:2,1,3:2:81:1,3:41,123:-9.55018,-6.76816,-13.1443,0,-3.29014,-5.77278 0|1:16:8,8,0:8:321:8,0:307,0:-23.1727,0,-24.4409,-25.581,-26.8492,-52.038 0|1:9:8,1,0:8:315:1,0:40,0:-1.28641,0,-26.0052,-3.69465,-26.3062,-29.602 dDocent_Contig_15137 7 . A G 1888.02 . AB=0.635593;ABP=21.8543;AC=3;AF=0.5;AN=6;AO=75;CIGAR=1X;DP=118;DPB=118;DPRA=0;EPP=165.871;EPPR=94.2121;GTI=0;LEN=1;MEANALT=1.33333;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=2542;QR=1582;RO=42;RPL=0;RPP=165.871;RPPR=94.2121;RPR=75;RUN=1;SAF=75;SAP=165.871;SAR=0;SRF=42;SRP=94.2121;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:47:22,25:22:834:25:831:-60.9273,0,-61.2343 0/1:35:4,31:4:152:31:1068:-85.8733,0,-3.51315 0/1:36:16,19:16:596:19:643:-47.5202,0,-43.3086 dDocent_Contig_15138 21 . T C 8104.99 . AB=0.028169;ABP=552.179;AC=0;AF=0;AN=6;AO=8;CIGAR=1X2M1X;DP=381;DPB=381;DPRA=0;EPP=20.3821;EPPR=131.127;GTI=0;LEN=1;MEANALT=3;MQM=60;MQMR=60;NS=3;NUMALT=3;ODDS=0;PAIRED=0.625;PAIREDR=0.966102;PAO=0;PQA=0;PQR=0;PRO=0;QA=320;QR=2315;RO=59;RPL=0;RPP=20.3821;RPPR=131.127;RPR=8;RUN=1;SAF=8;SAP=20.3821;SAR=0;SRF=59;SRP=131.127;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|0:244:35,2,72,135:35:1383:2,72,135:80,2888,5390:-557.508,-561.454,-674.653,-330.104,-437.315,-422.231,-124.143,-231.353,0,-197.304 0|0:40:2,6,12,20:2:78:6,12,20:240,437,781:-92.848,-73.6767,-78.2828,-57.7818,-44.4211,-60.581,-29.2441,-15.8773,0,-29.6366 0|0:97:22,0,30,45:22:854:0,30,45:0,1168,1780:-165.666,-172.289,-242.444,-76.3225,-146.477,-137.446,-25.8132,-95.9694,0,-82.423 dDocent_Contig_15140 29 . C T 33.469 . AB=0.1875;ABP=16.582;AC=2;AF=0.333333;AN=6;AO=3;CIGAR=1X;DP=17;DPB=17;DPRA=8;EPP=9.52472;EPPR=33.4109;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=122;QR=571;RO=14;RPL=0;RPP=9.52472;RPPR=33.4109;RPR=3;RUN=1;SAF=3;SAP=9.52472;SAR=0;SRF=14;SRP=33.4109;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:7:6,1:6:244:1:40:-1.88847,0,-20.2314 0/0:1:1,0:1:41:0:0:0,-0.30103,-4.09457 0/1:9:7,2:7:286:2:82:-5.07041,0,-23.4055 dDocent_Contig_15141 153 . C T 148.677 . AB=0;ABP=0;AC=2;AF=0.333333;AN=6;AO=4;CIGAR=1X;DP=18;DPB=18;DPRA=0.571429;EPP=11.6962;EPPR=33.4109;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=159;QR=566;RO=14;RPL=0;RPP=11.6962;RPPR=33.4109;RPR=4;RUN=1;SAF=0;SAP=11.6962;SAR=4;SRF=0;SRP=33.4109;SRR=14;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:8:8,0:8:324:0:0:0,-2.40824,-29.5292 0/0:6:6,0:6:242:0:0:0,-1.80618,-22.1573 1/1:4:0,4:0:0:4:159:-14.6914,-1.20412,0 dDocent_Contig_15142 12 . T C 936.676 . AB=0.380435;ABP=14.4341;AC=3;AF=0.5;AN=6;AO=35;CIGAR=1X;DP=92;DPB=92;DPRA=0;EPP=79.0118;EPPR=126.784;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=0.807018;PAO=0;PQA=0;PQR=0;PRO=0;QA=1398;QR=2307;RO=57;RPL=0;RPP=79.0118;RPPR=126.784;RPR=35;RUN=1;SAF=35;SAP=79.0118;SAR=0;SRF=57;SRP=126.784;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:46:20,26:20:801:26:1040:-80.0446,0,-58.5545 0/1:15:13,2:13:530:2:77:-2.79369,0,-43.5312 0/1:31:24,7:24:976:7:281:-16.3295,0,-78.8032 dDocent_Contig_15143 21 . C T 140.977 . AB=0.151515;ABP=72.629;AC=2;AF=0.333333;AN=6;AO=10;CIGAR=1X;DP=85;DPB=85;DPRA=1.73684;EPP=24.725;EPPR=165.871;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=408;QR=2977;RO=75;RPL=0;RPP=24.725;RPPR=165.871;RPR=10;RUN=1;SAF=10;SAP=24.725;SAR=0;SRF=75;SRP=165.871;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:43:37,6:37:1465:6:244:-9.39433,0,-119.148 0/0:19:19,0:19:760:0:0:0,-5.71957,-68.7168 0/1:23:19,4:19:752:4:164:-8.22621,0,-61.0777 dDocent_Contig_15144 83 . C A 40.1209 . AB=0.166667;ABP=31.9633;AC=2;AF=0.333333;AN=6;AO=5;CIGAR=1X;DP=31;DPB=31;DPRA=15;EPP=13.8677;EPPR=59.4686;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=0;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=171;QR=890;RO=26;RPL=5;RPP=13.8677;RPPR=59.4686;RPR=0;RUN=1;SAF=5;SAP=13.8677;SAR=0;SRF=26;SRP=59.4686;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:18:16,2:16:542:2:70:-1.22886,0,-43.6833 0/1:12:9,3:9:314:3:101:-5.81137,0,-24.9855 0/0:1:1,0:1:34:0:0:0,-0.30103,-3.39891 dDocent_Contig_15145 8 . A G 664.167 . AB=0.389831;ABP=9.23028;AC=4;AF=0.666666;AN=6;AO=23;CIGAR=1X1M;DP=59;DPB=59;DPRA=0;EPP=52.9542;EPPR=57.2971;GTI=0;LEN=1;MEANALT=2;MQM=60;MQMR=60;NS=3;NUMALT=2;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=866;QR=959;RO=25;RPL=0;RPP=52.9542;RPPR=57.2971;RPR=23;RUN=1;SAF=23;SAP=52.9542;SAR=0;SRF=25;SRP=57.2971;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|1:26:12,4,10:12:463:4,10:156,389:-28.3563,-19.1449,-55.9628,0,-25.1961,-35.0103 1|1:14:1,3,10:1:39:3,10:112,361:-35.0969,-26.2246,-28.5301,-5.948,0,-6.14772 0|1:19:12,4,3:12:457:4,3:148,116:-8.4859,0,-36.2768,-2.56289,-27.9515,-39.1534 dDocent_Contig_15146 39 . T C 750.271 . AB=0.490909;ABP=3.04978;AC=3;AF=0.5;AN=6;AO=27;CIGAR=1X;DP=55;DPB=55;DPRA=0;EPP=61.6401;EPPR=63.8115;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=1067;QR=1116;RO=28;RPL=0;RPP=61.6401;RPPR=63.8115;RPR=27;RUN=1;SAF=27;SAP=61.6401;SAR=0;SRF=28;SRP=63.8115;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:22:9,13:9:360:13:521:-40.6135,0,-26.1408 0/1:11:4,7:4:152:7:281:-22.3506,0,-10.736 0/1:22:15,7:15:604:7:265:-17.5858,0,-48.0761 dDocent_Contig_15149 27 . T C 200.643 . AB=0.0740741;ABP=88.0998;AC=1;AF=0.166667;AN=6;AO=4;CIGAR=10M1X2M;DP=60;DPB=59.2308;DPRA=0;EPP=11.6962;EPPR=98.5551;GTI=0;LEN=1;MEANALT=3;MQM=60;MQMR=60;NS=3;NUMALT=2;ODDS=0;PAIRED=0;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=161;QR=1718;RO=44;RPL=0;RPP=11.6962;RPPR=98.5551;RPR=4;RUN=1;SAF=4;SAP=11.6962;SAR=0;SRF=44;SRP=98.5551;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|0:34:26,5,1:26:1014:5,1:186,41:-7.37659,0,-81.8329,-11.8154,-79.9533,-94.8703 0|1:20:16,0,3:16:627:0,3:0,120:-5.23323,-10.0497,-61.648,0,-51.7599,-50.8568 0|0:6:2,4,0:2:77:4,0:160,0:-12.9772,0,-5.50265,-13.5793,-6.70677,-19.8964 dDocent_Contig_15150 8 . A G 400.663 . AB=0.271429;ABP=34.7758;AC=3;AF=0.5;AN=6;AO=19;CIGAR=1X1M;DP=70;DPB=70;DPRA=0;EPP=44.2683;EPPR=102.898;GTI=0;LEN=1;MEANALT=2;MQM=60;MQMR=60;NS=3;NUMALT=2;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=707;QR=1764;RO=46;RPL=0;RPP=44.2683;RPPR=102.898;RPR=19;RUN=1;SAF=19;SAP=44.2683;SAR=0;SRF=46;SRP=102.898;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|1:56:37,0,16:37:1421:0,16:0,598:-37.9736,-49.1117,-165.787,0,-116.828,-112.012 0|1:6:2,2,2:2:77:2,2:73,74:-5.45446,-0.0945766,-5.82236,0,-0.377843,-5.73027 0|1:8:7,0,1:7:266:0,1:0,35:-1.09039,-3.1976,-25.0385,0,-22.1945,-21.8935 dDocent_Contig_15151 9 . C G 65.8016 . AB=0.266667;ABP=10.1038;AC=2;AF=0.333333;AN=6;AO=4;CIGAR=1X;DP=20;DPB=20;DPRA=1.5;EPP=11.6962;EPPR=37.7539;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=154;QR=615;RO=16;RPL=0;RPP=11.6962;RPPR=37.7539;RPR=4;RUN=1;SAF=4;SAP=11.6962;SAR=0;SRF=16;SRP=37.7539;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:8:6,2:6:232:2:76:-4.80643,0,-18.8407 0/1:7:5,2:5:194:2:78:-5.29626,0,-15.7256 0/0:5:5,0:5:189:0:0:0,-1.50515,-17.3753 dDocent_Contig_15152 17 . G C 275.655 . AB=0.212121;ABP=50.5195;AC=3;AF=0.5;AN=6;AO=14;CIGAR=1X2M;DP=66;DPB=66;DPRA=0;EPP=33.4109;EPPR=92.7497;GTI=0;LEN=1;MEANALT=1.33333;MQM=60;MQMR=60;NS=3;NUMALT=2;ODDS=0;PAIRED=1;PAIREDR=0.897959;PAO=0;PQA=0;PQR=0;PRO=0;QA=570;QR=1905;RO=49;RPL=0;RPP=33.4109;RPPR=109.412;RPR=14;RUN=1;SAF=14;SAP=33.4109;SAR=0;SRF=47;SRP=92.7497;SRR=2;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|1:53:40,3,10:40:1566:3,10:119,408:-21.6302,-23.878,-151.716,0,-118.954,-125.74 0|1:6:4,0,2:4:153:0,2:0,81:-5.87955,-7.08367,-19.6234,0,-12.9368,-12.3347 0|1:7:5,0,2:5:186:0,2:0,81:-5.57852,-7.08367,-22.2814,0,-15.5929,-14.9908 dDocent_Contig_15153 39 . G A 709.178 . AB=0.0330579;ABP=232.163;AC=0;AF=0;AN=6;AO=4;CIGAR=1M1X5M;DP=143;DPB=139.429;DPRA=0;EPP=5.18177;EPPR=88.0117;GTI=0;LEN=1;MEANALT=6;MQM=60;MQMR=60;NS=3;NUMALT=4;ODDS=0;PAIRED=0;PAIREDR=0.566265;PAO=0;PQA=0;PQR=0;PRO=0;QA=163;QR=3206;RO=83;RPL=1;RPP=5.18177;RPPR=88.0117;RPR=3;RUN=1;SAF=4;SAP=11.6962;SAR=0;SRF=83;SRP=183.243;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|0:92:58,12,1,15,0:58:2233:12,1,15,0:449,40,566,0:-28.9256,-10.4973,-190.21,-43.0896,-190.527,-226.118,0,-147.438,-180.034,-178.814,-46.3854,-193.822,-226.419,-183.329,-229.714 0|0:22:10,12,0,0,0:10:393:12,0,0,0:442,0,0,0:-33.0605,0,-29.1053,-36.0708,-32.7176,-68.4088,-36.0708,-32.7176,-68.4088,-68.4088,-36.0708,-32.7176,-68.4088,-68.4088,-68.4088 0|0:29:15,1,3,6,2:15:580:1,3,6,2:40,123,231,61:-14.4545,-15.6734,-63.012,-8.80977,-53.1576,-55.5503,0,-44.3458,-37.4854,-45.8354,-14.0955,-58.4319,-51.5727,-42.762,-61.1254 dDocent_Contig_15154 64 . A C 387.514 . 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AB=0.384615;ABP=10.5269;AC=3;AF=0.5;AN=6;AO=25;CIGAR=1X;DP=65;DPB=65;DPRA=0;EPP=57.2971;EPPR=89.8692;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=977;QR=1529;RO=40;RPL=0;RPP=57.2971;RPPR=89.8692;RPR=25;RUN=1;SAF=25;SAP=57.2971;SAR=0;SRF=40;SRP=89.8692;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:41:22,19:22:850:19:764:-56.7379,0,-64.4695 0/1:14:12,2:12:463:2:74:-2.81044,0,-37.7992 0/1:10:6,4:6:216:4:139:-9.83313,0,-16.7747 dDocent_Contig_15157 7 . A G 13438.8 . AB=0.0481283;ABP=997.974;AC=0;AF=0;AN=6;AO=27;CIGAR=1X2M1X2M1X;DP=561;DPB=561.429;DPRA=0;EPP=61.6401;EPPR=55.1256;GTI=0;LEN=1;MEANALT=7.33333;MQM=60;MQMR=60;NS=3;NUMALT=4;ODDS=0;PAIRED=0.37037;PAIREDR=1;PAO=1.5;PQA=57;PQR=0;PRO=0;QA=959;QR=926;RO=24;RPL=0;RPP=61.6401;RPPR=55.1256;RPR=27;RUN=1;SAF=27;SAP=61.6401;SAR=0;SRF=24;SRP=55.1256;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|0:279:8,5,33,194,29:8:308:5,33,194,29:181,1313,7716,1149:-715.677,-703.311,-727.095,-609.977,-620.491,-625.332,-82.8231,-93.3387,0,-49.7119,-623.516,-634.031,-540.697,-13.541,-640.075 0|0:107:2,15,15,64,4:2:77:15,15,64,4:536,581,2443,161:-240.366,-197.279,-199.086,-193.248,-155.881,-195.055,-41.4022,-4.04199,0,-28.4591,-227.698,-190.331,-186.3,-34.4533,-232.817 0|0:175:14,7,19,110,25:14:541:7,19,110,25:242,763,4368,1001:-393.36,-377.915,-420.242,-334.701,-359.477,-373.416,-38.0321,-62.8099,-19.5897,-49.3521,-315.113,-339.888,-296.674,0,-352.021 dDocent_Contig_15158 50 . C T 1209.54 . AB=0.311111;ABP=30.9017;AC=4;AF=0.666666;AN=6;AO=28;CIGAR=1X7M;DP=90;DPB=90;DPRA=0;EPP=63.8115;EPPR=50.7827;GTI=0;LEN=1;MEANALT=3;MQM=60;MQMR=60;NS=3;NUMALT=5;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=1107;QR=857;RO=22;RPL=28;RPP=63.8115;RPPR=50.7827;RPR=0;RUN=1;SAF=28;SAP=63.8115;SAR=0;SRF=22;SRP=50.7827;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 1|1:53:1,12,8,3,10,19:1:40:12,8,3,10,19:476,316,117,402,749:-97.1974,-58.3176,-58.0005,-71.4948,-35.6092,-72.3818,-87.8817,-51.9961,-65.1733,-90.2737,-64.3693,-28.4832,-41.6607,-58.0477,-64.6542,-35.8851,0,-13.1772,-29.5638,-6.05063,-33.4607 0|1:19:7,0,4,0,0,8:7:276:0,4,0,0,8:0,158,0,0,317:-23.9854,-26.0926,-48.8003,-13.0911,-35.7984,-34.5943,-26.0926,-48.8003,-35.7984,-48.8003,-26.0926,-48.8003,-35.7984,-48.8003,-48.8003,0,-22.7078,-9.70559,-22.7078,-22.7078,-20.2995 0|1:18:14,3,0,0,0,1:14:541:3,0,0,0,1:116,0,0,0,41:-5.29434,0,-43.5063,-9.50876,-44.4094,-53.9353,-9.50876,-44.4094,-53.9353,-53.9353,-9.50876,-44.4094,-53.9353,-53.9353,-53.9353,-6.11888,-41.0237,-50.5499,-50.5499,-50.5499,-50.2489 dDocent_Contig_15159 107 . N C 924.165 . AB=0;ABP=0;AC=6;AF=1;AN=6;AO=30;CIGAR=1X3M1D5M;DP=30;DPB=27;DPRA=0;EPP=68.1545;EPPR=0;GTI=0;LEN=1;MEANALT=1;MQM=58.4;MQMR=0;NS=3;NUMALT=1;ODDS=0;PAIRED=0.966667;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=1014;QR=0;RO=0;RPL=0;RPP=68.1545;RPPR=0;RPR=30;RUN=1;SAF=0;SAP=68.1545;SAR=30;SRF=0;SRP=0;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 1|1:17:0,17:0:0:17:568:-51.1289,-5.11751,0 1|1:5:0,5:0:0:5:171:-15.7267,-1.50515,0 1|1:8:0,8:0:0:8:275:-25.0837,-2.40824,0 dDocent_Contig_15160 20 . A T 102.344 . 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A G 92.8206 . AB=0.363636;ABP=4.78696;AC=1;AF=0.166667;AN=6;AO=4;CIGAR=1X;DP=28;DPB=28;DPRA=1.29412;EPP=11.6962;EPPR=55.1256;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=156;QR=923;RO=24;RPL=0;RPP=11.6962;RPPR=55.1256;RPR=4;RUN=1;SAF=4;SAP=11.6962;SAR=0;SRF=24;SRP=55.1256;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:8:8,0:8:310:0:0:0,-2.40824,-28.2636 0/0:9:9,0:9:346:0:0:0,-2.70927,-31.4992 0/1:11:7,4:7:267:4:156:-11.106,0,-21.0813 dDocent_Contig_15165 12 . A T 13643.4 . AB=0.0640327;ABP=1214.77;AC=0;AF=0;AN=6;AO=47;CIGAR=1X3M1X2M;DP=734;DPB=733.571;DPRA=0;EPP=105.07;EPPR=52.9542;GTI=0;LEN=1;MEANALT=17.3333;MQM=58.8085;MQMR=60;NS=3;NUMALT=5;ODDS=0;PAIRED=0.914894;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=1847;QR=887;RO=23;RPL=0;RPP=105.07;RPPR=52.9542;RPR=47;RUN=1;SAF=47;SAP=105.07;SAR=0;SRF=23;SRP=52.9542;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|0:426:12,28,63,25,18,183:12:458:28,63,25,18,183:1110,2450,1007,722,7235:-755.423,-667.985,-697.128,-557.712,-504.233,-576.318,-676.036,-622.558,-512.284,-706.082,-699.548,-646.07,-535.796,-654.121,-731.701,-163.753,-110.274,0,-118.324,-141.836,-146.236 0|0:76:3,8,7,11,4,26:3:111:8,7,11,4,26:305,274,447,163,1032:-111.842,-87.7296,-94.4011,-90.2164,-74.2807,-97.189,-75.8743,-59.9385,-62.4251,-81.6429,-99.2971,-83.3613,-85.8481,-71.5059,-107.173,-27.7931,-11.8576,-14.3437,0,-23.4241,-29.0459 0|0:232:8,11,17,16,4,144:8:318:11,17,16,4,144:432,674,634,161,5774:-502.598,-469.475,-492.346,-449.528,-440.179,-470.592,-452.823,-443.474,-423.527,-474.189,-491.737,-482.388,-462.441,-465.736,-516.715,-29.2964,-19.9478,0,-3.29557,-42.2094,-12.1306 dDocent_Contig_15166 9 . C T 491.786 . AB=0.156951;ABP=230.956;AC=3;AF=0.5;AN=6;AO=35;CIGAR=1X;DP=223;DPB=223;DPRA=0;EPP=79.0118;EPPR=411.247;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=1342;QR=7152;RO=188;RPL=0;RPP=79.0118;RPPR=411.247;RPR=35;RUN=1;SAF=35;SAP=79.0118;SAR=0;SRF=188;SRP=411.247;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:106:88,18:88:3357:18:688:-30.3423,0,-270.363 0/1:29:23,6:23:885:6:229:-12.2454,0,-71.24 0/1:88:77,11:77:2910:11:425:-12.1138,0,-235.593 dDocent_Contig_15167 15 . C T 44.6259 . AB=0.12766;ABP=59.6072;AC=1;AF=0.166667;AN=6;AO=17;CIGAR=1X;DP=273;DPB=273;DPRA=0;EPP=39.9253;EPPR=556.736;GTI=0;LEN=1;MEANALT=1.33333;MQM=44.1176;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=0.352941;PAIREDR=0.984314;PAO=0;PQA=0;PQR=0;PRO=0;QA=652;QR=10182;RO=255;RPL=0;RPP=39.9253;RPPR=556.736;RPR=17;RUN=1;SAF=17;SAP=39.9253;SAR=0;SRF=255;SRP=556.736;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:122:118,4:118:4683:4:155:0,-24.1667,-408.822 0/1:47:40,6:40:1602:6:228:-6.28648,0,-130.459 0/0:104:97,7:97:3897:7:269:0,-8.68002,-328.095 dDocent_Contig_15168 9 . C T 180.922 . AB=0.0647482;ABP=231.734;AC=0;AF=0;AN=6;AO=10;CIGAR=1X3M1X2M;DP=155;DPB=155;DPRA=0;EPP=24.725;EPPR=250.558;GTI=0;LEN=1;MEANALT=2.66667;MQM=60;MQMR=60;NS=3;NUMALT=4;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=384;QR=4372;RO=114;RPL=0;RPP=24.725;RPPR=250.558;RPR=10;RUN=1;SAF=10;SAP=24.725;SAR=0;SRF=114;SRP=250.558;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|0:100:73,3,4,9,11:73:2799:3,4,9,11:118,156,349,426:-13.0188,-25.2865,-254.109,-22.1704,-242.188,-250.691,-6.32463,-226.342,-223.225,-233.339,0,-220.017,-216.9,-201.054,-226.412 0|0:16:15,0,1,0,0:15:578:0,1,0,0:0,36,0,0:0,-4.51545,-52.0012,-1.2182,-49.0654,-48.7643,-4.51545,-52.0012,-49.0654,-52.0012,-4.51545,-52.0012,-49.0654,-52.0012,-52.0012 0|0:39:26,3,5,5,0:26:995:3,5,5,0:115,192,199,0:-8.56378,-6.95341,-87.6969,-0.63264,-72.839,-80.7726,0,-72.2128,-65.8904,-80.1466,-16.3906,-88.6,-82.2777,-81.6517,-98.0387 dDocent_Contig_15169 17 . A G 152.643 . AB=0.118343;ABP=216.83;AC=3;AF=0.5;AN=6;AO=20;CIGAR=1X;DP=169;DPB=169;DPRA=0;EPP=46.4397;EPPR=317.932;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=59.3289;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=0.973154;PAO=0;PQA=0;PQR=0;PRO=0;QA=784;QR=5918;RO=149;RPL=0;RPP=46.4397;RPPR=326.56;RPR=20;RUN=1;SAF=20;SAP=46.4397;SAR=0;SRF=148;SRP=317.932;SRR=1;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:74:67,7:67:2695:7:280:-3.29298,0,-220.388 0/1:44:38,6:38:1495:6:243:-9.00286,0,-116.862 0/1:51:44,7:44:1728:7:261:-8.48398,0,-140.39 dDocent_Contig_15170 7 . A T 584.349 . AB=0.182741;ABP=175.24;AC=3;AF=0.5;AN=6;AO=36;CIGAR=1X;DP=197;DPB=197;DPRA=0;EPP=81.1833;EPPR=352.617;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=58.1429;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=0.428571;PAO=0;PQA=0;PQR=0;PRO=0;QA=1358;QR=6166;RO=161;RPL=0;RPP=81.1833;RPPR=352.617;RPR=36;RUN=1;SAF=36;SAP=81.1833;SAR=0;SRF=161;SRP=352.617;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:56:47,9:47:1797:9:349:-14.9132,0,-144.922 0/1:81:65,16:65:2490:16:601:-30.042,0,-198.741 0/1:60:49,11:49:1879:11:408:-19.0025,0,-150.789 dDocent_Contig_15171 127 . T A 39.8916 . AB=0.138889;ABP=43.7857;AC=1;AF=0.166667;AN=6;AO=5;CIGAR=1X;DP=48;DPB=48;DPRA=6;EPP=6.91895;EPPR=96.3836;GTI=0;LEN=1;MEANALT=1;MQM=50.6;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=0;PAIREDR=0.953488;PAO=0;PQA=0;PQR=0;PRO=0;QA=179;QR=1562;RO=43;RPL=0;RPP=13.8677;RPPR=96.3836;RPR=5;RUN=1;SAF=1;SAP=6.91895;SAR=4;SRF=0;SRP=96.3836;SRR=43;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:36:31,5:31:1135:5:179:-5.51163,0,-91.6168 0/0:2:2,0:2:74:0:0:0,-0.60206,-7.02588 0/0:10:10,0:10:353:0:0:0,-3.0103,-32.1075 dDocent_Contig_15172 13 . T C 1112.59 . AB=0.394231;ABP=13.116;AC=3;AF=0.5;AN=6;AO=41;CIGAR=1X;DP=104;DPB=104;DPRA=0;EPP=92.0407;EPPR=139.813;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=1634;QR=2409;RO=63;RPL=0;RPP=92.0407;RPPR=139.813;RPR=41;RUN=1;SAF=41;SAP=92.0407;SAR=0;SRF=63;SRP=139.813;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:36:23,13:23:864:13:508:-35.2262,0,-67.2332 0/1:30:18,12:18:680:12:486:-35.0607,0,-52.4993 0/1:38:22,16:22:865:16:640:-46.4949,0,-66.7275 dDocent_Contig_15173 190 . T A 60.173 . AB=0.192308;ABP=24.391;AC=1;AF=0.25;AN=4;AO=5;CIGAR=2X1M1X2M1X;DP=43;DPB=43;DPRA=1.52941;EPP=13.8677;EPPR=85.5263;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=2;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=169;QR=1494;RO=38;RPL=5;RPP=13.8677;RPPR=85.5263;RPR=0;RUN=1;SAF=0;SAP=13.8677;SAR=5;SRF=0;SRP=85.5263;SRR=38;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|1:26:21,5:21:828:5:169:-7.71627,0,-67.0121 .:.:.:.:.:.:.:. 0|0:17:17,0:17:666:0:0:0,-5.11751,-60.2725 dDocent_Contig_15174 9 . C T 343.163 . AB=0.6;ABP=5.18177;AC=3;AF=0.5;AN=6;AO=15;CIGAR=1X;DP=25;DPB=25;DPRA=0;EPP=35.5824;EPPR=24.725;GTI=0;LEN=1;MEANALT=1;MQM=59.5333;MQMR=52.3;NS=3;NUMALT=1;ODDS=0;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=515;QR=344;RO=10;RPL=0;RPP=35.5824;RPPR=24.725;RPR=15;RUN=1;SAF=0;SAP=35.5824;SAR=15;SRF=0;SRP=24.725;SRR=10;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:7:2,5:2:70:5:172:-13.7072,0,-4.54019 0/1:4:2,2:2:66:2:70:-5.44328,0,-4.92559 0/1:14:6,8:6:208:8:273:-20.688,0,-12.7356 dDocent_Contig_15175 71 . G A 326.182 . AB=0.416667;ABP=5.18177;AC=2;AF=0.5;AN=4;AO=15;CIGAR=1X;DP=36;DPB=36;DPRA=0;EPP=35.5824;EPPR=46.4397;GTI=0;LEN=1;MEANALT=1.5;MQM=60;MQMR=60;NS=2;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=515;QR=668;RO=20;RPL=15;RPP=35.5824;RPPR=46.4397;RPR=0;RUN=1;SAF=15;SAP=35.5824;SAR=0;SRF=20;SRP=46.4397;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:21:9,12:9:285:12:411:-30.9975,0,-19.6371 ./.:.:.:.:.:.:.:. 0/1:15:11,3:11:383:3:104:-5.31954,0,-30.4607 dDocent_Contig_15176 9 . C T 54.7383 . AB=0.142857;ABP=41.7866;AC=1;AF=0.166667;AN=6;AO=13;CIGAR=1X;DP=157;DPB=157;DPRA=0;EPP=31.2394;EPPR=315.702;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=6.93889e-18;PAIRED=1;PAIREDR=0.868056;PAO=0;PQA=0;PQR=0;PRO=0;QA=498;QR=5526;RO=144;RPL=0;RPP=31.2394;RPPR=315.702;RPR=13;RUN=1;SAF=13;SAP=31.2394;SAR=0;SRF=144;SRP=315.702;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:52:50,2:50:1926:2:76:0,-8.43875,-166.368 0/1:35:30,5:30:1151:5:194:-7.29679,0,-93.3537 0/0:70:64,6:64:2449:6:228:0,-0.187811,-199.733 dDocent_Contig_15177 15 . T C 1794.4 . AB=0.0547945;ABP=380.043;AC=3;AF=0.5;AN=6;AO=12;CIGAR=1X4M;DP=219;DPB=218.4;DPRA=0;EPP=29.068;EPPR=272.273;GTI=0;LEN=1;MEANALT=4.66667;MQM=60;MQMR=59.9758;NS=3;NUMALT=2;ODDS=0;PAIRED=1;PAIREDR=0.959677;PAO=0;PQA=0;PQR=0;PRO=0;QA=452;QR=4872;RO=124;RPL=0;RPP=29.068;RPPR=272.273;RPR=12;RUN=1;SAF=12;SAP=29.068;SAR=0;SRF=124;SRP=272.273;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|1:87:55,24,2:55:2169:24,2:960,59:-62.5772,0,-171.287,-74.4366,-173.812,-252.293 0|1:53:30,15,5:30:1171:15,5:587,191:-39.2316,0,-91.7411,-32.5952,-80.588,-127.344 0|1:79:39,30,5:39:1532:30,5:1156,202:-83.1543,0,-116.96,-78.2394,-109.337,-202.732 dDocent_Contig_15178 30 . A T 451.222 . AB=0.243902;ABP=49.7234;AC=2;AF=0.333333;AN=6;AO=21;CIGAR=1X;DP=101;DPB=101;DPRA=0;EPP=48.6112;EPPR=174.557;GTI=0;LEN=1;MEANALT=1.33333;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=846;QR=3110;RO=79;RPL=0;RPP=48.6112;RPPR=174.557;RPR=21;RUN=1;SAF=21;SAP=48.6112;SAR=0;SRF=79;SRP=174.557;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:44:28,15:28:1126:15:608:-41.7045,0,-88.2683 0/1:38:33,5:33:1291:5:200:-6.94057,0,-105.015 0/0:19:18,1:18:693:1:38:0,-1.9223,-58.8876 dDocent_Contig_15179 9 . C T 106.034 . AB=0.666667;ABP=4.45795;AC=1;AF=0.166667;AN=6;AO=4;CIGAR=1X;DP=33;DPB=33;DPRA=0.444444;EPP=11.6962;EPPR=65.983;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=8.67362e-19;PAIRED=0;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=154;QR=1103;RO=29;RPL=0;RPP=11.6962;RPPR=65.983;RPR=4;RUN=1;SAF=4;SAP=11.6962;SAR=0;SRF=29;SRP=65.983;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:8:8,0:8:305:0:0:0,-2.40824,-27.8087 0/0:19:19,0:19:720:0:0:0,-5.71957,-65.1304 0/1:6:2,4:2:78:4:154:-12.4273,0,-5.59729 dDocent_Contig_15180 79 . T A 241.287 . AB=0.387097;ABP=6.44263;AC=3;AF=0.5;AN=6;AO=12;CIGAR=1X;DP=31;DPB=31;DPRA=0;EPP=29.068;EPPR=44.2683;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=405;QR=651;RO=19;RPL=12;RPP=29.068;RPPR=44.2683;RPR=0;RUN=1;SAF=12;SAP=29.068;SAR=0;SRF=19;SRP=44.2683;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:8:6,2:6:210:2:69:-4.14442,0,-16.8342 0/1:13:4,9:4:141:9:301:-23.5017,0,-9.12371 0/1:10:9,1:9:300:1:35:-0.488329,0,-24.314 dDocent_Contig_15181 29 . G T 36.782 . AB=0.333333;ABP=4.45795;AC=1;AF=0.166667;AN=6;AO=2;CIGAR=1X;DP=32;DPB=32;DPRA=0.461538;EPP=7.35324;EPPR=68.1545;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=77;QR=1169;RO=30;RPL=0;RPP=7.35324;RPPR=68.1545;RPR=2;RUN=1;SAF=2;SAP=7.35324;SAR=0;SRF=30;SRP=68.1545;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:12:12,0:12:462:0:0:0,-3.61236,-41.9223 0/1:6:4,2:4:152:2:77:-5.50202,0,-12.2394 0/0:14:14,0:14:555:0:0:0,-4.21442,-50.2921 dDocent_Contig_15182 9 . C T 1368.01 . AB=0.0704846;ABP=366.756;AC=0;AF=0;AN=6;AO=16;CIGAR=1X10M;DP=227;DPB=227;DPRA=0;EPP=37.7539;EPPR=165.981;GTI=0;LEN=1;MEANALT=11;MQM=60;MQMR=59.8734;NS=3;NUMALT=8;ODDS=0;PAIRED=0;PAIREDR=0.303797;PAO=0;PQA=0;PQR=0;PRO=0;QA=620;QR=3106;RO=79;RPL=0;RPP=37.7539;RPPR=174.557;RPR=16;RUN=1;SAF=16;SAP=37.7539;SAR=0;SRF=78;SRP=165.981;SRR=1;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|0:85:29,11,1,6,0,2,4,17,3:29:1137:11,1,6,0,2,4,17,3:434,41,237,0,80,154,683,122:-47.2036,-20.2747,-110.444,-52.5682,-110.391,-145.748,-36.4328,-94.255,-126.549,-128.108,-55.9335,-113.756,-146.049,-129.914,-149.415,-49.3431,-107.165,-139.459,-123.324,-142.824,-142.222,-43.2895,-101.112,-133.405,-117.27,-136.77,-130.18,-135.566,0,-57.8227,-90.1166,-73.981,-93.4819,-86.8915,-80.8377,-88.3644,-45.8695,-103.692,-135.986,-119.85,-139.351,-132.761,-126.707,-83.418,-138.448 0|0:72:21,3,5,1,4,3,9,22,4:21:828:3,5,1,4,3,9,22,4:107,198,39,153,117,349,860,162:-64.3042,-62.459,-129.683,-54.5369,-114.497,-121.16,-67.4199,-127.38,-119.459,-135.246,-58.0725,-118.033,-110.111,-122.994,-124.996,-61.2761,-121.236,-113.315,-126.198,-116.85,-128.5,-41.9516,-101.912,-93.9908,-106.874,-97.5262,-100.73,-107.37,0,-59.963,-52.0408,-64.9237,-55.5765,-58.78,-39.4557,-61.507,-57.266,-117.226,-109.305,-122.188,-112.841,-116.044,-96.7201,-54.7699,-124.19 0|0:70:29,9,5,1,0,4,3,12,1:29:1141:9,5,1,0,4,3,12,1:359,190,40,0,131,117,480,41:-30.8164,-10.1343,-101.294,-24.5477,-89.0042,-116.908,-36.2507,-100.708,-115.118,-129.816,-39.5463,-104.003,-118.413,-130.117,-133.412,-28.9752,-93.4303,-107.84,-119.543,-122.839,-121.635,-29.9278,-94.3851,-108.795,-120.499,-123.794,-113.221,-122.891,0,-64.4611,-78.872,-90.5755,-93.8709,-83.2983,-84.2529,-90.2586,-36.1614,-100.619,-115.029,-126.732,-130.027,-119.454,-120.41,-90.4864,-129.726 dDocent_Contig_15183 109 . T A 132.01 . AB=0.166667;ABP=14.5915;AC=3;AF=0.5;AN=6;AO=6;CIGAR=1X;DP=34;DPB=34;DPRA=0.444444;EPP=16.0391;EPPR=63.8115;GTI=0;LEN=1;MEANALT=1;MQM=53.8333;MQMR=59.0357;NS=3;NUMALT=1;ODDS=0;PAIRED=0;PAIREDR=0.964286;PAO=0;PQA=0;PQR=0;PRO=0;QA=198;QR=960;RO=28;RPL=0;RPP=16.0391;RPPR=63.8115;RPR=6;RUN=1;SAF=0;SAP=16.0391;SAR=6;SRF=0;SRP=63.8115;SRR=28;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:18:18,0:18:613:0:0:0,-5.41854,-55.1727 1/1:4:0,4:0:0:4:131:-11.9481,-1.20412,0 0/1:12:10,2:10:347:2:67:-2.75078,0,-27.9529 dDocent_Contig_15184 40 . T G 67.6324 . AB=0.190476;ABP=20.4855;AC=1;AF=0.25;AN=4;AO=4;CIGAR=1X;DP=27;DPB=27;DPRA=3.5;EPP=11.6962;EPPR=52.9542;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=2;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=160;QR=925;RO=23;RPL=0;RPP=11.6962;RPPR=52.9542;RPR=4;RUN=1;SAF=4;SAP=11.6962;SAR=0;SRF=23;SRP=52.9542;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:21:17,4:17:685:4:160:-8.46217,0,-55.658 0/0:6:6,0:6:240:0:0:0,-1.80618,-21.9757 ./.:.:.:.:.:.:.:. dDocent_Contig_15186 31 . A C 1162.54 . AB=0.44186;ABP=5.53527;AC=4;AF=0.666667;AN=6;AO=38;CIGAR=1X11M;DP=86;DPB=87.5;DPRA=0;EPP=85.5263;EPPR=68.1545;GTI=0;LEN=1;MEANALT=2.33333;MQM=60;MQMR=60;NS=3;NUMALT=2;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=1533;QR=1178;RO=30;RPL=0;RPP=85.5263;RPPR=68.1545;RPR=38;RUN=1;SAF=38;SAP=85.5263;SAR=0;SRF=30;SRP=68.1545;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|1:41:17,11,12:17:667:11,12:445,483:-34.6975,-3.11417,-54.6622,0,-18.1589,-51.2471 1|1:9:0,1,8:0:0:1,8:41,314:-29.5982,-26.2122,-25.9112,-3.79354,0,-1.3853 0|1:36:13,5,18:13:511:5,18:198,736:-56.8321,-44.4532,-84.9707,0,-25.7313,-36.6086 dDocent_Contig_15187 68 . T C 352.073 . AB=0.262295;ABP=32.9481;AC=2;AF=0.333333;AN=6;AO=16;CIGAR=1X;DP=80;DPB=80;DPRA=1.60526;EPP=37.7539;EPPR=141.985;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=621;QR=2293;RO=64;RPL=16;RPP=37.7539;RPPR=141.985;RPR=0;RUN=1;SAF=16;SAP=37.7539;SAR=0;SRF=64;SRP=141.985;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:53:38,15:38:1374:15:581:-36.6775,0,-107.997 0/0:19:19,0:19:682:0:0:0,-5.71957,-61.7042 0/1:8:7,1:7:237:1:40:-1.58744,0,-19.2513 dDocent_Contig_15188 34 . C T 57.1826 . AB=0.210526;ABP=16.8392;AC=2;AF=0.333333;AN=6;AO=4;CIGAR=1X;DP=25;DPB=25;DPRA=1.58333;EPP=11.6962;EPPR=48.6112;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=157;QR=834;RO=21;RPL=0;RPP=11.6962;RPPR=48.6112;RPR=4;RUN=1;SAF=4;SAP=11.6962;SAR=0;SRF=21;SRP=48.6112;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:14:11,3:11:438:3:119:-6.88076,0,-35.5614 0/1:5:4,1:4:157:1:38:-2.29212,0,-13.0027 0/0:6:6,0:6:239:0:0:0,-1.80618,-21.8852 dDocent_Contig_15189 8 . A G 271.398 . AB=0.254902;ABP=29.6215;AC=2;AF=0.333333;AN=6;AO=14;CIGAR=1X;DP=69;DPB=69;DPRA=0;EPP=33.4109;EPPR=122.441;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=0.981818;PAO=0;PQA=0;PQR=0;PRO=0;QA=541;QR=2081;RO=55;RPL=0;RPP=33.4109;RPPR=122.441;RPR=14;RUN=1;SAF=14;SAP=33.4109;SAR=0;SRF=55;SRP=122.441;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:30:27,3:27:1019:3:117:-1.87948,0,-82.983 0/0:18:17,1:17:639:1:37:0,-1.72071,-54.1458 0/1:21:11,10:11:423:10:387:-28.8659,0,-32.1016 dDocent_Contig_15194 16 . C A 146.265 . AB=0.269231;ABP=15.0369;AC=2;AF=0.333333;AN=6;AO=7;CIGAR=1X;DP=32;DPB=32;DPRA=2.16667;EPP=18.2106;EPPR=57.2971;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=0;PAIREDR=0.8;PAO=0;PQA=0;PQR=0;PRO=0;QA=280;QR=987;RO=25;RPL=0;RPP=18.2106;RPPR=57.2971;RPR=7;RUN=1;SAF=7;SAP=18.2106;SAR=0;SRF=25;SRP=57.2971;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:21:16,5:16:621:5:198:-11.8748,0,-49.8941 0/0:6:6,0:6:243:0:0:0,-1.80618,-22.2482 0/1:5:3,2:3:123:2:82:-6.27453,0,-9.95964 dDocent_Contig_15196 11 . G T 178.173 . AB=0.4375;ABP=3.55317;AC=2;AF=0.333333;AN=6;AO=7;CIGAR=2X;DP=22;DPB=22;DPRA=1.33333;EPP=18.2106;EPPR=35.5824;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=0.857143;PAIREDR=0.866667;PAO=0;PQA=0;PQR=0;PRO=0;QA=282;QR=585;RO=15;RPL=0;RPP=18.2106;RPPR=35.5824;RPR=7;RUN=1;SAF=7;SAP=18.2106;SAR=0;SRF=15;SRP=35.5824;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|1:12:7,5:7:282:5:201:-14.8585,0,-22.1408 0|1:4:2,2:2:76:2:81:-6.48161,0,-6.00942 0|0:6:6,0:6:227:0:0:0,-1.80618,-20.7879 dDocent_Contig_15197 7 . A C 110.774 . AB=0.24;ABP=17.6895;AC=1;AF=0.25;AN=4;AO=6;CIGAR=1X;DP=109;DPB=109;DPRA=0.297619;EPP=16.0391;EPPR=226.672;GTI=0;LEN=1;MEANALT=1;MQM=55;MQMR=59.4272;NS=2;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=228;QR=3940;RO=103;RPL=0;RPP=16.0391;RPPR=226.672;RPR=6;RUN=1;SAF=6;SAP=16.0391;SAR=0;SRF=103;SRP=226.672;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:84:84,0:84:3211:0:0:0,-25.2865,-289.082 ./.:.:.:.:.:.:.:. 0/1:25:19,6:19:729:6:228:-13.0774,0,-58.0673 dDocent_Contig_15198 14 . G T 838.319 . AB=0.172414;ABP=30.0414;AC=1;AF=0.166667;AN=6;AO=5;CIGAR=1X1M1X;DP=62;DPB=62;DPRA=0;EPP=13.8677;EPPR=68.1545;GTI=0;LEN=1;MEANALT=1.5;MQM=60;MQMR=60;NS=3;NUMALT=2;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=196;QR=1187;RO=30;RPL=0;RPP=13.8677;RPPR=68.1545;RPR=5;RUN=1;SAF=5;SAP=13.8677;SAR=0;SRF=30;SRP=68.1545;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|0:33:16,0,17:16:630:0,17:0,675:-51.1469,-55.9634,-107.788,0,-52.2201,-47.1026 0|1:8:5,3,0:5:198:3,0:118,0:-8.59448,0,-15.7891,-10.0996,-16.6922,-26.3979 0|0:21:9,2,10:9:359:2,10:78,393:-29.6134,-25.9116,-54.878,0,-23.163,-26.5627 dDocent_Contig_15200 50 . A T 68.6334 . AB=0.333333;ABP=5.18177;AC=1;AF=0.166667;AN=6;AO=3;CIGAR=1X;DP=24;DPB=24;DPRA=1.2;EPP=9.52472;EPPR=48.6112;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=119;QR=738;RO=21;RPL=3;RPP=9.52472;RPPR=48.6112;RPR=0;RUN=1;SAF=3;SAP=9.52472;SAR=0;SRF=21;SRP=48.6112;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:9:6,3:6:226:3:119:-8.38612,0,-17.9926 0/0:11:11,0:11:375:0:0:0,-3.31133,-34.0694 0/0:4:4,0:4:137:0:0:0,-1.20412,-12.667 dDocent_Contig_15202 9 . C T 92.8862 . AB=0.666667;ABP=6.62942;AC=1;AF=0.166667;AN=6;AO=17;CIGAR=1X;DP=58;DPB=58;DPRA=0;EPP=39.9253;EPPR=92.0407;GTI=0;LEN=1;MEANALT=1;MQM=16.9412;MQMR=49.6098;NS=3;NUMALT=1;ODDS=0;PAIRED=0;PAIREDR=0.682927;PAO=0;PQA=0;PQR=0;PRO=0;QA=647;QR=1532;RO=41;RPL=0;RPP=39.9253;RPPR=92.0407;RPR=17;RUN=1;SAF=17;SAP=39.9253;SAR=0;SRF=41;SRP=92.0407;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:15:5,10:5:179:10:375:-10.8101,0,-8.2841 0/0:17:15,2:15:548:2:78:0,-1.8926,-40.213 0/0:26:21,5:21:805:5:194:0,-0.0197304,-63.2117 dDocent_Contig_15203 7 . A T 45.7106 . AB=0.2;ABP=14.7363;AC=1;AF=0.166667;AN=6;AO=3;CIGAR=1X;DP=48;DPB=48;DPRA=0.909091;EPP=9.52472;EPPR=76.4061;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=117;QR=1693;RO=45;RPL=0;RPP=9.52472;RPPR=100.727;RPR=3;RUN=1;SAF=3;SAP=9.52472;SAR=0;SRF=42;SRP=76.4061;SRR=3;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:27:27,0:27:1026:0:0:0,-8.12781,-92.6488 0/0:6:6,0:6:210:0:0:0,-1.80618,-19.2408 0/1:15:12,3:12:457:3:117:-6.39493,0,-36.9623 dDocent_Contig_15204 21 . C T 761.825 . AB=0.0218978;ABP=275.015;AC=0;AF=0;AN=6;AO=3;CIGAR=1M5I14M1X6M;DP=204;DPB=234.409;DPRA=0;EPP=9.52472;EPPR=96.3836;GTI=0;LEN=1;MEANALT=17.5;MQM=60;MQMR=59.7907;NS=3;NUMALT=10;ODDS=5.55112e-17;PAIRED=0;PAIREDR=0.883721;PAO=0;PQA=0;PQR=0;PRO=0;QA=111;QR=1661;RO=43;RPL=0;RPP=9.52472;RPPR=96.3836;RPR=3;RUN=1;SAF=3;SAP=9.52472;SAR=0;SRF=43;SRP=96.3836;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|0:90:19,5,3,1,1,14,8,8,7,0,4:19:735:5,3,1,1,14,8,8,7,0,4:161,102,39,35,511,276,290,253,0,129:-32.5393,-25.2867,-84.1582,-30.4147,-77.8194,-89.8883,-35.0523,-82.4571,-87.5851,-95.1281,-35.4471,-82.8517,-87.9797,-92.6175,-95.5228,0,-47.4062,-52.5339,-57.1713,-57.5661,-56.1632,-16.1444,-63.5499,-68.6777,-73.3154,-73.7101,-38.2645,-74.1134,-14.6636,-62.0695,-67.1974,-71.8351,-72.2298,-36.7839,-52.9277,-72.6332,-18.0705,-65.4761,-70.604,-75.2417,-75.6363,-40.1905,-56.3343,-54.8539,-76.3408,-38.2588,-85.6633,-90.7913,-95.4291,-95.8238,-60.3776,-76.5217,-75.0414,-78.448,-98.6354,-28.531,-75.9356,-81.0635,-85.7011,-86.0958,-50.6503,-66.794,-65.3136,-68.7202,-88.9074,-87.7033 0|0:47:5,4,1,2,5,10,1,6,3,0,0:5:192:4,1,2,5,10,1,6,3,0,0:152,38,72,183,379,40,221,111,0,0:-30.1734,-19.8621,-34.4195,-28.7507,-32.6959,-44.2111,-25.8036,-29.7489,-38.6373,-40.963,-17.1525,-21.098,-29.9864,-27.0394,-31.4089,-2.28229,-6.22824,-15.1167,-12.1697,-3.51887,-15.0341,-28.4362,-32.3814,-41.2699,-38.3229,-29.6718,-14.802,-43.8966,-13.6338,-17.5794,-26.4679,-23.5209,-14.8699,0,-26.1534,-27.5895,-23.1917,-27.137,-36.0254,-33.0784,-24.4275,-9.55797,-35.7109,-20.909,-38.05,-31.6785,-35.6237,-44.5121,-41.5651,-32.9141,-18.0444,-44.1977,-29.3957,-38.9531,-47.4398,-31.6785,-35.6237,-44.5121,-41.5651,-32.9141,-18.0444,-44.1977,-29.3957,-38.9531,-47.4398,-47.4398 0|0:67:19,1,3,0,0,6,1,4,9,2,0:19:734:1,3,0,0,6,1,4,9,2,0:40,93,0,0,220,40,124,321,80,0:-18.992,-21.6402,-81.629,-17.5676,-74.7861,-76.9538,-24.7115,-81.93,-77.8569,-85.0009,-24.7115,-81.93,-77.8569,-85.0009,-85.0009,-7.84859,-65.0689,-60.9962,-68.1398,-68.1398,-66.3337,-21.4688,-78.6878,-74.6148,-81.7587,-81.7587,-64.8976,-81.4577,-15.3135,-72.5318,-68.459,-75.6026,-75.6026,-58.742,-72.3605,-74.3985,0,-57.221,-53.1484,-60.2919,-60.2919,-43.4311,-57.0497,-50.8944,-57.5826,-18.1186,-75.3382,-71.2652,-78.4091,-78.4091,-61.548,-75.1669,-69.0109,-53.7,-77.8071,-24.7115,-81.93,-77.8569,-85.0009,-85.0009,-68.1398,-81.7587,-75.6026,-60.2919,-78.4091,-85.0009 dDocent_Contig_15205 25 . C G 158.279 . AB=0.318182;ABP=9.32731;AC=2;AF=0.333333;AN=6;AO=7;CIGAR=1X;DP=34;DPB=34;DPRA=0.916667;EPP=10.7656;EPPR=61.6401;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=0;PAIREDR=0.444444;PAO=0;PQA=0;PQR=0;PRO=0;QA=280;QR=1065;RO=27;RPL=0;RPP=18.2106;RPPR=61.6401;RPR=7;RUN=1;SAF=6;SAP=10.7656;SAR=1;SRF=27;SRP=61.6401;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:16:13,3:13:524:3:123:-6.64831,0,-42.6912 0/1:6:2,4:2:82:4:157:-12.7024,0,-5.9735 0/0:12:12,0:12:459:0:0:0,-3.61236,-41.6465 dDocent_Contig_15207 11 . C T 64.3459 . AB=0.222222;ABP=15.074;AC=2;AF=0.333333;AN=6;AO=4;CIGAR=1X;DP=23;DPB=23;DPRA=1.8;EPP=11.6962;EPPR=44.2683;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=0.842105;PAO=0;PQA=0;PQR=0;PRO=0;QA=159;QR=746;RO=19;RPL=0;RPP=11.6962;RPPR=44.2683;RPR=4;RUN=1;SAF=4;SAP=11.6962;SAR=0;SRF=19;SRP=44.2683;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:11:8,3:8:318:3:120:-7.87636,0,-25.6755 0/0:5:5,0:5:196:0:0:0,-1.50515,-18.015 0/1:7:6,1:6:232:1:39:-1.78935,0,-19.1399 dDocent_Contig_15209 7 . A G 4595.06 . AB=0.294723;ABP=287.401;AC=3;AF=0.5;AN=6;AO=229;CIGAR=1X;DP=777;DPB=777;DPRA=0;EPP=500.277;EPPR=1138.69;GTI=0;LEN=1;MEANALT=3;MQM=59.9083;MQMR=59.9694;NS=3;NUMALT=1;ODDS=0;PAIRED=0.938865;PAIREDR=0.975143;PAO=0;PQA=0;PQR=0;PRO=0;QA=7684;QR=19933;RO=523;RPL=0;RPP=500.277;RPPR=1138.69;RPR=229;RUN=1;SAF=229;SAP=500.277;SAR=0;SRF=523;SRP=1138.69;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:352:275,66:275:10485:66:2138:-89.7448,0,-840.327 0/1:151:83,65:83:3141:65:2329:-165.011,0,-238.037 0/1:274:165,98:165:6307:98:3217:-210.274,0,-488.163 dDocent_Contig_15211 9 . C T 402.761 . AB=0.354167;ABP=11.8771;AC=3;AF=0.5;AN=6;AO=17;CIGAR=1X3M1X;DP=48;DPB=48;DPRA=0;EPP=39.9253;EPPR=65.983;GTI=0;LEN=1;MEANALT=1.33333;MQM=60;MQMR=60;NS=3;NUMALT=2;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=655;QR=1130;RO=29;RPL=0;RPP=39.9253;RPPR=65.983;RPR=17;RUN=1;SAF=17;SAP=39.9253;SAR=0;SRF=29;SRP=65.983;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|1:17:7,8,2:7:266:8,2:309,82:-23.2498,0,-19.3786,-18.5841,-15.0121,-39.7892 0|1:11:6,5,0:6:231:5,0:193,0:-14.4295,0,-17.8462,-16.2356,-19.3513,-35.2017 0|1:20:16,4,0:16:633:4,0:153,0:-8.11972,0,-51.2874,-12.9362,-52.4915,-65.0429 dDocent_Contig_15212 16 . G A 297.833 . AB=0.169811;ABP=103.39;AC=3;AF=0.5;AN=6;AO=18;CIGAR=1X;DP=106;DPB=106;DPRA=0;EPP=42.0968;EPPR=194.1;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=729;QR=3452;RO=88;RPL=0;RPP=42.0968;RPPR=194.1;RPR=18;RUN=1;SAF=18;SAP=42.0968;SAR=0;SRF=88;SRP=194.1;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:57:52,5:52:2042:5:204:-1.58532,0,-166.81 0/1:20:17,3:17:682:3:123:-5.44419,0,-55.6883 0/1:29:19,10:19:728:10:402:-27.8095,0,-57.1019 dDocent_Contig_15213 98 . N C 43.5073 . AB=0;ABP=0;AC=2;AF=1;AN=2;AO=2;CIGAR=1M1I1M10X;DP=2;DPB=2.16667;DPRA=0;EPP=7.35324;EPPR=0;GTI=0;LEN=1;MEANALT=1;MQM=23;MQMR=0;NS=1;NUMALT=1;ODDS=5.99146;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=78;QR=0;RO=0;RPL=0;RPP=7.35324;RPPR=0;RPR=2;RUN=1;SAF=2;SAP=7.35324;SAR=0;SRF=0;SRP=0;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL .:.:.:.:.:.:.:. .:.:.:.:.:.:.:. 1|1:2:0,2:0:0:2:78:-4.34963,-0.60206,0 dDocent_Contig_15214 107 . N C 98.4191 . AB=0;ABP=0;AC=4;AF=1;AN=4;AO=7;CIGAR=1X;DP=7;DPB=7;DPRA=0;EPP=18.2106;EPPR=0;GTI=0;LEN=1;MEANALT=1;MQM=20.4286;MQMR=0;NS=2;NUMALT=1;ODDS=0;PAIRED=0.142857;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=229;QR=0;RO=0;RPL=0;RPP=18.2106;RPPR=0;RPR=7;RUN=1;SAF=0;SAP=18.2106;SAR=7;SRF=0;SRP=0;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 1/1:4:0,4:0:0:4:125:-5.90832,-1.20412,0 1/1:3:0,3:0:0:3:104:-3.63211,-0.90309,0 ./.:.:.:.:.:.:.:. dDocent_Contig_15215 110 . C A 165.291 . AB=0.36;ABP=7.26639;AC=3;AF=0.5;AN=6;AO=9;CIGAR=1X;DP=25;DPB=25;DPRA=0;EPP=22.5536;EPPR=37.7539;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=317;QR=557;RO=16;RPL=0;RPP=22.5536;RPPR=37.7539;RPR=9;RUN=1;SAF=0;SAP=22.5536;SAR=9;SRF=0;SRP=37.7539;SRR=16;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:9:7,2:7:243:2:72:-4.12745,0,-19.4996 0/1:9:6,3:6:209:3:104:-6.99354,0,-16.4418 0/1:7:3,4:3:105:4:141:-10.9299,0,-7.68895 dDocent_Contig_15216 31 . C G 516.003 . AB=0.261905;ABP=44.3717;AC=2;AF=0.333333;AN=6;AO=22;CIGAR=1X;DP=156;DPB=156;DPRA=0.583333;EPP=50.7827;EPPR=293.988;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=59.8657;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=0.880597;PAO=0;PQA=0;PQR=0;PRO=0;QA=884;QR=5393;RO=134;RPL=0;RPP=50.7827;RPPR=293.988;RPR=22;RUN=1;SAF=22;SAP=50.7827;SAR=0;SRF=134;SRP=293.988;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:77:56,21:56:2265:21:843:-53.0014,0,-180.601 0/1:7:6,1:6:243:1:41:-1.98736,0,-20.141 0/0:72:72,0:72:2885:0:0:0,-21.6742,-259.746 dDocent_Contig_15218 110 . T G 76.5216 . AB=0.193548;ABP=28.2974;AC=2;AF=0.333333;AN=6;AO=6;CIGAR=1X;DP=37;DPB=37;DPRA=2.58333;EPP=16.0391;EPPR=70.3259;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=205;QR=1073;RO=31;RPL=0;RPP=16.0391;RPPR=70.3259;RPR=6;RUN=1;SAF=0;SAP=16.0391;SAR=6;SRF=0;SRP=70.3259;SRR=31;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:21:19,2:19:656:2:70:-0.325766,0,-53.041 0/1:10:6,4:6:207:4:135:-9.473,0,-15.9573 0/0:6:6,0:6:210:0:0:0,-1.80618,-19.2425 dDocent_Contig_15219 34 . C T 46.8556 . AB=0.666667;ABP=3.73412;AC=1;AF=0.166667;AN=6;AO=2;CIGAR=1X;DP=16;DPB=16;DPRA=0.461538;EPP=7.35324;EPPR=33.4109;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=78;QR=555;RO=14;RPL=0;RPP=7.35324;RPPR=33.4109;RPR=2;RUN=1;SAF=2;SAP=7.35324;SAR=0;SRF=14;SRP=33.4109;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:7:7,0:7:285:0:0:0,-2.10721,-26.0244 0/1:3:1,2:1:41:2:78:-6.50021,0,-3.19148 0/0:6:6,0:6:229:0:0:0,-1.80618,-20.9696 dDocent_Contig_15220 10 . C A 94.2783 . AB=0.193548;ABP=28.2974;AC=2;AF=0.333333;AN=6;AO=6;CIGAR=1X;DP=63;DPB=63;DPRA=0.484375;EPP=16.0391;EPPR=126.784;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=239;QR=2311;RO=57;RPL=0;RPP=16.0391;RPPR=126.784;RPR=6;RUN=1;SAF=6;SAP=16.0391;SAR=0;SRF=57;SRP=126.784;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:32:32,0:32:1301:0:0:0,-9.63296,-117.349 0/1:4:2,2:2:80:2:80:-6.38767,0,-6.38745 0/1:27:23,4:23:930:4:159:-6.56302,0,-75.874 dDocent_Contig_15221 18 . C T 47.2772 . AB=0.173913;ABP=24.253;AC=2;AF=0.333333;AN=6;AO=7;CIGAR=2X;DP=62;DPB=62;DPRA=0;EPP=18.2106;EPPR=122.441;GTI=0;LEN=1;MEANALT=1;MQM=57.4286;MQMR=60;NS=3;NUMALT=1;ODDS=3.46945e-18;PAIRED=0;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=283;QR=2195;RO=55;RPL=0;RPP=18.2106;RPPR=122.441;RPR=7;RUN=1;SAF=7;SAP=18.2106;SAR=0;SRF=55;SRP=122.441;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|0:39:36,3:36:1437:3:123:0,-0.290335,-118.126 0|1:12:10,2:10:398:2:79:-3.88205,0,-32.5671 0|1:11:9,2:9:360:2:81:-4.36529,0,-29.4513 dDocent_Contig_15222 88 . A T 46.1666 . AB=0.214286;ABP=12.937;AC=1;AF=0.166667;AN=6;AO=3;CIGAR=1X;DP=33;DPB=33;DPRA=1.47368;EPP=9.52472;EPPR=68.1545;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=111;QR=1063;RO=30;RPL=3;RPP=9.52472;RPPR=68.1545;RPR=0;RUN=1;SAF=3;SAP=9.52472;SAR=0;SRF=30;SRP=68.1545;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:14:11,3:11:391:3:111:-6.1395,0,-31.3143 0/0:6:6,0:6:221:0:0:0,-1.80618,-20.2468 0/0:13:13,0:13:451:0:0:0,-3.91339,-40.9211 dDocent_Contig_15223 118 . T G 33.0818 . AB=0.4;ABP=3.44459;AC=1;AF=0.166667;AN=6;AO=2;CIGAR=1X;DP=59;DPB=59;DPRA=0.185185;EPP=7.35324;EPPR=126.784;GTI=0;LEN=1;MEANALT=1;MQM=53;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=0;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=70;QR=1903;RO=57;RPL=0;RPP=7.35324;RPPR=126.784;RPR=2;RUN=1;SAF=0;SAP=7.35324;SAR=2;SRF=0;SRP=126.784;SRR=57;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:36:36,0:36:1230:0:0:0,-10.8371,-111.002 0/1:5:3,2:3:93:2:70:-5.13188,0,-7.17221 0/0:18:18,0:18:580:0:0:0,-5.41854,-52.5058 dDocent_Contig_15224 12 . G C 264.367 . AB=0.225806;ABP=43.4978;AC=3;AF=0.5;AN=6;AO=14;CIGAR=1X;DP=62;DPB=62;DPRA=0;EPP=33.4109;EPPR=107.241;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=550;QR=1917;RO=48;RPL=0;RPP=33.4109;RPPR=107.241;RPR=14;RUN=1;SAF=14;SAP=33.4109;SAR=0;SRF=48;SRP=107.241;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:29:25,4:25:997:4:159:-5.96096,0,-81.2975 0/1:9:5,4:5:204:4:156:-11.7049,0,-16.0348 0/1:24:18,6:18:716:6:235:-14.2937,0,-57.5388 dDocent_Contig_15226 19 . C T 34.1878 . AB=0.121212;ABP=44.1367;AC=1;AF=0.166667;AN=6;AO=4;CIGAR=1X;DP=61;DPB=61;DPRA=2.35714;EPP=11.6962;EPPR=126.784;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=0.912281;PAO=0;PQA=0;PQR=0;PRO=0;QA=161;QR=2268;RO=57;RPL=0;RPP=11.6962;RPPR=126.784;RPR=4;RUN=1;SAF=4;SAP=11.6962;SAR=0;SRF=57;SRP=126.784;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:33:29,4:29:1162:4:161:-4.94149,0,-94.9223 0/0:14:14,0:14:554:0:0:0,-4.21442,-50.2003 0/0:14:14,0:14:552:0:0:0,-4.21442,-50.0183 dDocent_Contig_15228 16 . T A 42.9511 . AB=0.129032;ABP=40.0654;AC=1;AF=0.166667;AN=6;AO=4;CIGAR=1X;DP=57;DPB=57;DPRA=2.38462;EPP=11.6962;EPPR=118.098;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=164;QR=2118;RO=53;RPL=0;RPP=11.6962;RPPR=118.098;RPR=4;RUN=1;SAF=4;SAP=11.6962;SAR=0;SRF=53;SRP=118.098;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:31:27,4:27:1066:4:164:-5.81797,0,-86.8945 0/0:12:12,0:12:484:0:0:0,-3.61236,-43.9114 0/0:14:14,0:14:568:0:0:0,-4.21442,-51.4611 dDocent_Contig_15229 134 . T C 190.387 . AB=0.4;ABP=5.18177;AC=3;AF=0.5;AN=6;AO=10;CIGAR=1X;DP=25;DPB=25;DPRA=0;EPP=24.725;EPPR=35.5824;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=341;QR=498;RO=15;RPL=0;RPP=24.725;RPPR=35.5824;RPR=10;RUN=1;SAF=0;SAP=24.725;SAR=10;SRF=0;SRP=35.5824;SRR=15;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:11:8,3:8:272:3:104:-6.39176,0,-21.4997 0/1:8:2,6:2:68:6:202:-16.1027,0,-4.04969 0/1:6:5,1:5:158:1:35:-1.69245,0,-12.7248 dDocent_Contig_15230 51 . A T 1322.34 . AB=0.141667;ABP=136.845;AC=0;AF=0;AN=6;AO=17;CIGAR=4M1X1M;DP=120;DPB=87.3333;DPRA=0;EPP=39.9253;EPPR=120.27;GTI=0;LEN=1;MEANALT=2;MQM=60;MQMR=60;NS=3;NUMALT=2;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=658;QR=2146;RO=54;RPL=17;RPP=39.9253;RPPR=120.27;RPR=0;RUN=1;SAF=17;SAP=39.9253;SAR=0;SRF=54;SRP=120.27;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|0:50:15,27,8:15:604:27,8:1031,310:-80.0577,0,-41.664,-59.1073,-24.3326,-106.489 0|0:41:20,17,4:20:787:17,4:652,157:-47.4827,0,-59.6187,-40.5894,-51.8242,-104.126 0|0:29:19,5,5:19:755:5,5:193,191:-10.1312,0,-60.6639,-0.187729,-46.5072,-60.8484 dDocent_Contig_15231 36 . T C 519.919 . AB=0.452381;ABP=3.83753;AC=3;AF=0.5;AN=6;AO=19;CIGAR=1X;DP=42;DPB=42;DPRA=0;EPP=44.2683;EPPR=52.9542;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=767;QR=893;RO=23;RPL=0;RPP=44.2683;RPPR=52.9542;RPR=19;RUN=1;SAF=19;SAP=44.2683;SAR=0;SRF=23;SRP=52.9542;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:21:12,9:12:467:9:364:-26.8025,0,-36.0525 0/1:13:7,6:7:283:6:240:-18.0621,0,-21.93 0/1:8:4,4:4:143:4:163:-12.6502,0,-10.8112 dDocent_Contig_15232 27 . G A 2965.7 . AB=0.624204;ABP=24.0473;AC=3;AF=0.5;AN=6;AO=98;CIGAR=1X;DP=157;DPB=157;DPRA=0;EPP=215.815;EPPR=131.127;GTI=0;LEN=1;MEANALT=1;MQM=58.898;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=0.979592;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=3941;QR=2366;RO=59;RPL=0;RPP=215.815;RPPR=131.127;RPR=98;RUN=1;SAF=98;SAP=215.815;SAR=0;SRF=59;SRP=131.127;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:101:31,70:31:1243:70:2815:-216.927,0,-81.7371 0/1:14:5,9:5:197:9:359:-28.4573,0,-13.8911 0/1:42:23,19:23:926:19:767:-56.7085,0,-71.002 dDocent_Contig_15233 8 . A G 230.798 . AB=0.26087;ABP=14.4341;AC=2;AF=0.333333;AN=6;AO=6;CIGAR=1X1M1X;DP=47;DPB=47;DPRA=0;EPP=16.0391;EPPR=76.8404;GTI=0;LEN=1;MEANALT=1.5;MQM=60;MQMR=60;NS=3;NUMALT=2;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=232;QR=1287;RO=34;RPL=0;RPP=16.0391;RPPR=76.8404;RPR=6;RUN=1;SAF=6;SAP=16.0391;SAR=0;SRF=34;SRP=76.8404;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|0:24:18,0,6:18:696:0,6:0,232:-13.7883,-19.2068,-76.3789,0,-57.5553,-55.7491 0|1:5:3,1,1:3:115:1,1:38,38:-2.21342,0,-9.14022,0,-6.32557,-9.14022 0|1:18:13,5,0:13:476:5,0:194,0:-12.4143,0,-37.7558,-16.3277,-39.261,-55.207 dDocent_Contig_15234 46 . C T 110.672 . AB=0.266667;ABP=10.1038;AC=4;AF=0.666667;AN=6;AO=5;CIGAR=1X3M1D5M;DP=16;DPB=15.5;DPRA=0;EPP=13.8677;EPPR=26.8965;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=197;QR=436;RO=11;RPL=5;RPP=13.8677;RPPR=26.8965;RPR=0;RUN=1;SAF=5;SAP=13.8677;SAR=0;SRF=11;SRP=26.8965;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|1:8:5,3:5:202:3:118:-8.59334,0,-16.1538 1|1:1:0,1:0:0:1:39:-3.89656,-0.30103,0 0|1:7:6,1:6:234:1:40:-1.88847,0,-19.3225 dDocent_Contig_15235 12 . A C 42.7689 . AB=0.119048;ABP=55.9529;AC=1;AF=0.166667;AN=6;AO=5;CIGAR=1X;DP=118;DPB=118;DPRA=1.10526;EPP=13.8677;EPPR=248.387;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=204;QR=4526;RO=113;RPL=0;RPP=13.8677;RPPR=248.387;RPR=5;RUN=1;SAF=5;SAP=13.8677;SAR=0;SRF=113;SRP=248.387;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:51:51,0:51:2045:0:0:0,-15.3525,-184.235 0/0:25:25,0:25:1010:0:0:0,-7.52575,-91.1946 0/1:42:37,5:37:1471:5:204:-6.10077,0,-119.994 dDocent_Contig_15236 113 . G A 109.202 . AB=0.217391;ABP=18.9659;AC=4;AF=0.666667;AN=6;AO=6;CIGAR=1X;DP=24;DPB=24;DPRA=0;EPP=16.0391;EPPR=42.0968;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=209;QR=595;RO=18;RPL=0;RPP=16.0391;RPPR=42.0968;RPR=6;RUN=1;SAF=0;SAP=16.0391;SAR=6;SRF=0;SRP=42.0968;SRR=18;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:10:9,1:9:304:1:35:-0.488329,0,-24.6783 1/1:1:0,1:0:0:1:35:-3.49863,-0.30103,0 0/1:13:9,4:9:291:4:139:-8.9393,0,-22.5915 dDocent_Contig_15237 9 . C T 79.8588 . AB=0.157895;ABP=41.6397;AC=1;AF=0.166667;AN=6;AO=7;CIGAR=1X;DP=195;DPB=195;DPRA=1.15254;EPP=18.2106;EPPR=411.247;GTI=0;LEN=1;MEANALT=1;MQM=58.1429;MQMR=57.9309;NS=3;NUMALT=1;ODDS=3.46945e-18;PAIRED=0;PAIREDR=0.132979;PAO=0;PQA=0;PQR=0;PRO=0;QA=271;QR=7222;RO=188;RPL=0;RPP=18.2106;RPPR=411.247;RPR=7;RUN=1;SAF=7;SAP=18.2106;SAR=0;SRF=188;SRP=411.247;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:98:97,1:97:3715:1:39:0,-25.6648,-329.762 0/1:38:32,6:32:1227:6:232:-9.80979,0,-98.5866 0/0:59:59,0:59:2280:0:0:0,-17.7608,-204.826 dDocent_Contig_15238 98 . N A 130.315 . AB=0;ABP=0;AC=4;AF=1;AN=4;AO=4;CIGAR=1X;DP=4;DPB=4;DPRA=0;EPP=11.6962;EPPR=0;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=0;NS=2;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=134;QR=0;RO=0;RPL=4;RPP=11.6962;RPPR=0;RPR=0;RUN=1;SAF=4;SAP=11.6962;SAR=0;SRF=0;SRP=0;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 1/1:3:0,3:0:0:3:100:-9.33012,-0.90309,0 ./.:.:.:.:.:.:.:. 1/1:1:0,1:0:0:1:34:-3.39891,-0.30103,0 dDocent_Contig_15239 14 . A G 412.127 . AB=0.576923;ABP=4.34659;AC=2;AF=0.333333;AN=6;AO=15;CIGAR=1X;DP=33;DPB=33;DPRA=1.85714;EPP=35.5824;EPPR=42.0968;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=576;QR=718;RO=18;RPL=0;RPP=35.5824;RPPR=42.0968;RPR=15;RUN=1;SAF=15;SAP=35.5824;SAR=0;SRF=18;SRP=42.0968;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:17:7,10:7:283:10:376:-29.0655,0,-20.725 0/0:7:7,0:7:276:0:0:0,-2.10721,-25.2067 0/1:9:4,5:4:159:5:200:-15.6701,0,-11.9822 dDocent_Contig_15241 48 . T C 60.6548 . AB=0.125;ABP=61.6401;AC=1;AF=0.166667;AN=6;AO=6;CIGAR=1X;DP=181;DPB=181;DPRA=0.721805;EPP=16.0391;EPPR=365.845;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=244;QR=6933;RO=175;RPL=0;RPP=16.0391;RPPR=365.845;RPR=6;RUN=1;SAF=6;SAP=16.0391;SAR=0;SRF=175;SRP=383.018;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:121:121,0:121:4814:0:0:0,-36.4246,-433.171 0/0:12:12,0:12:483:0:0:0,-3.61236,-43.8216 0/1:48:42,6:42:1636:6:244:-7.88939,0,-133.014 dDocent_Contig_15242 19 . T C 209.754 . AB=0.257143;ABP=20.9405;AC=1;AF=0.166667;AN=6;AO=11;CIGAR=1X;DP=64;DPB=64;DPRA=2.7;EPP=26.8965;EPPR=118.098;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=3.46945e-18;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=419;QR=1741;RO=53;RPL=0;RPP=26.8965;RPPR=118.098;RPR=11;RUN=1;SAF=11;SAP=26.8965;SAR=0;SRF=53;SRP=118.098;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:35:26,9:26:875:9:363:-22.4977,0,-68.5168 0/0:10:10,0:10:324:0:0:0,-3.0103,-29.4739 0/0:19:17,2:17:542:2:56:0,-0.40219,-43.7595 dDocent_Contig_15243 94 . T C 623.734 . AB=0.595238;ABP=6.31921;AC=4;AF=0.666667;AN=6;AO=26;CIGAR=1X;DP=43;DPB=43;DPRA=0;EPP=59.4686;EPPR=39.9253;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=862;QR=567;RO=17;RPL=26;RPP=59.4686;RPPR=39.9253;RPR=0;RUN=1;SAF=26;SAP=59.4686;SAR=0;SRF=17;SRP=39.9253;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:27:7,20:7:245:20:678:-53.2091,0,-14.2634 1/1:1:0,1:0:0:1:35:-3.49863,-0.30103,0 0/1:15:10,5:10:322:5:149:-9.18776,0,-24.7761 dDocent_Contig_15244 49 . T A 79.3797 . AB=0.222222;ABP=9.04217;AC=3;AF=0.5;AN=6;AO=4;CIGAR=1M2I5M1X;DP=24;DPB=25.4286;DPRA=0.5;EPP=11.6962;EPPR=44.2683;GTI=0;LEN=1;MEANALT=1.5;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=132;QR=733;RO=19;RPL=0;RPP=11.6962;RPPR=44.2683;RPR=4;RUN=1;SAF=4;SAP=11.6962;SAR=0;SRF=19;SRP=44.2683;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|0:12:12,0:12:478:0:0:0,-3.61236,-43.3718 1|1:3:0,2:0:0:2:57:-5.05039,-0.60206,0 0|1:9:7,2:7:255:2:75:-4.40953,0,-20.5832 dDocent_Contig_15245 26 . A G 409.084 . AB=0.555556;ABP=3.73412;AC=2;AF=0.333333;AN=6;AO=15;CIGAR=1X;DP=31;DPB=31;DPRA=3.375;EPP=35.5824;EPPR=37.7539;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=576;QR=611;RO=16;RPL=0;RPP=35.5824;RPPR=37.7539;RPR=15;RUN=1;SAF=15;SAP=35.5824;SAR=0;SRF=16;SRP=37.7539;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:14:6,8:6:237:8:302:-23.318,0,-17.4865 0/1:13:6,7:6:233:7:274:-21.1131,0,-17.4207 0/0:4:4,0:4:141:0:0:0,-1.20412,-13.0323 dDocent_Contig_15246 27 . A G 2292.58 . AB=0.133333;ABP=20.5268;AC=0;AF=0;AN=6;AO=2;CIGAR=1X2M2X;DP=98;DPB=98;DPRA=0;EPP=7.35324;EPPR=48.6112;GTI=0;LEN=1;MEANALT=2;MQM=60;MQMR=60;NS=3;NUMALT=2;ODDS=0;PAIRED=0;PAIREDR=0.809524;PAO=0;PQA=0;PQR=0;PRO=0;QA=77;QR=809;RO=21;RPL=0;RPP=7.35324;RPPR=48.6112;RPR=2;RUN=1;SAF=2;SAP=7.35324;SAR=0;SRF=21;SRP=48.6112;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|0:54:8,0,46:8:314:0,46:0,1791:-145.167,-147.575,-173.399,0,-26.2162,-12.3688 0|0:15:6,2,7:6:230:2,7:77,270:-20.366,-15.8499,-34.1229,0,-12.5521,-16.7677 0|0:29:7,0,22:7:265:0,22:0,863:-69.2482,-71.3554,-93.0725,0,-22.0986,-15.4759 dDocent_Contig_15247 46 . A T 191.512 . AB=0.0340909;ABP=168.931;AC=0;AF=0;AN=6;AO=3;CIGAR=1X1M1X;DP=92;DPB=101.333;DPRA=11;EPP=9.52472;EPPR=163.699;GTI=0;LEN=1;MEANALT=2.5;MQM=60;MQMR=60;NS=3;NUMALT=2;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=119;QR=2946;RO=74;RPL=0;RPP=9.52472;RPPR=163.699;RPR=3;RUN=1;SAF=3;SAP=9.52472;SAR=0;SRF=74;SRP=163.699;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|0:66:54,1,10:54:2164:1,10:39,405:-17.1441,-30.1951,-208.169,0,-175.074,-175.27 0|0:4:4,0,0:4:160:0,0:0,0:0,-1.20412,-14.7838,-1.20412,-14.7838,-14.7838 0|0:22:16,2,4:16:622:2,4:80,129:-5.52967,-3.73022,-54.2852,0,-44.5028,-49.8901 dDocent_Contig_15248 15 . G A 36.1725 . AB=0.148148;ABP=61.0771;AC=1;AF=0.166667;AN=6;AO=13;CIGAR=1X;DP=182;DPB=182;DPRA=0;EPP=31.2394;EPPR=258.46;GTI=0;LEN=1;MEANALT=1;MQM=35.5385;MQMR=49.5917;NS=3;NUMALT=1;ODDS=0;PAIRED=0.846154;PAIREDR=0.52071;PAO=0;PQA=0;PQR=0;PRO=0;QA=509;QR=6662;RO=169;RPL=0;RPP=31.2394;RPPR=369.989;RPR=13;RUN=1;SAF=13;SAP=31.2394;SAR=0;SRF=155;SRP=258.46;SRR=14;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:69:66,3:66:2623:3:123:0,-15.7371,-224.98 0/0:59:57,2:57:2197:2:79:0,-12.7722,-153.401 0/1:54:46,8:46:1842:8:307:-5.44105,0,-144.955 dDocent_Contig_15250 20 . T A 3703.77 . AB=0.75974;ABP=93.2533;AC=3;AF=0.5;AN=6;AO=117;CIGAR=1X;DP=154;DPB=154;DPRA=0;EPP=257.073;EPPR=83.3548;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=0.756757;PAO=0;PQA=0;PQR=0;PRO=0;QA=4684;QR=1483;RO=37;RPL=0;RPP=257.073;RPPR=83.3548;RPR=117;RUN=1;SAF=117;SAP=257.073;SAR=0;SRF=37;SRP=83.3548;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:81:18,63:18:729:63:2520:-202.552,0,-41.5513 0/1:15:4,11:4:158:11:430:-34.533,0,-10.0839 0/1:58:15,43:15:596:43:1734:-138.815,0,-36.5171 dDocent_Contig_15251 55 . C T 74.4948 . AB=0.210526;ABP=16.8392;AC=1;AF=0.166667;AN=6;AO=4;CIGAR=1X1M1X;DP=33;DPB=33;DPRA=2.71429;EPP=11.6962;EPPR=65.983;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=159;QR=1111;RO=29;RPL=4;RPP=11.6962;RPPR=65.983;RPR=0;RUN=1;SAF=4;SAP=11.6962;SAR=0;SRF=29;SRP=65.983;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|1:19:15,4:15:576:4:159:-8.97218,0,-46.4572 0|0:3:3,0:3:117:0:0:0,-0.90309,-10.9099 0|0:11:11,0:11:418:0:0:0,-3.31133,-37.9684 dDocent_Contig_15253 21 . C A 42.6254 . AB=0.4;ABP=3.44459;AC=1;AF=0.166667;AN=6;AO=2;CIGAR=1X;DP=69;DPB=69;DPRA=0.15625;EPP=7.35324;EPPR=148.499;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=8.67362e-19;PAIRED=0;PAIREDR=0.985075;PAO=0;PQA=0;PQR=0;PRO=0;QA=80;QR=2642;RO=67;RPL=0;RPP=7.35324;RPPR=148.499;RPR=2;RUN=1;SAF=2;SAP=7.35324;SAR=0;SRF=67;SRP=148.499;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:50:50,0:50:1983:0:0:0,-15.0515,-178.665 0/1:5:3,2:3:121:2:80:-6.08642,0,-9.77484 0/0:14:14,0:14:538:0:0:0,-4.21442,-48.7528 dDocent_Contig_15254 75 . G A 41.5313 . AB=0.190476;ABP=20.4855;AC=1;AF=0.166667;AN=6;AO=4;CIGAR=1X;DP=107;DPB=107;DPRA=0.488372;EPP=11.6962;EPPR=226.672;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=133;QR=3502;RO=103;RPL=4;RPP=11.6962;RPPR=226.672;RPR=0;RUN=1;SAF=4;SAP=11.6962;SAR=0;SRF=103;SRP=226.672;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:61:61,0:61:2102:0:0:0,-18.3628,-189.456 0/1:21:17,4:17:573:4:133:-5.97701,0,-45.5683 0/0:25:25,0:25:827:0:0:0,-7.52575,-74.7351 dDocent_Contig_15255 134 . T G 189.298 . AB=0.368421;ABP=5.8675;AC=3;AF=0.5;AN=6;AO=8;CIGAR=1X1M1X;DP=31;DPB=31;DPRA=0.909091;EPP=20.3821;EPPR=44.2683;GTI=0;LEN=1;MEANALT=1.5;MQM=60;MQMR=60;NS=3;NUMALT=2;ODDS=0;PAIRED=0;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=277;QR=659;RO=19;RPL=0;RPP=20.3821;RPPR=44.2683;RPR=8;RUN=1;SAF=0;SAP=20.3821;SAR=8;SRF=0;SRP=44.2683;SRR=19;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|1:19:9,7,3:9:316:7,3:242,105:-16.9525,0,-23.6129,-11.1173,-17.1772,-35.9365 1|1:1:0,1,0:0:0:1,0:35,0:-3.49863,-0.30103,0,-3.49863,-0.30103,-3.49863 0|0:11:10,0,0:10:343:0,0:0,0:0,-3.0103,-31.0522,-3.0103,-31.0522,-31.0522 dDocent_Contig_15258 46 . T C 713.417 . AB=0.272727;ABP=52.3619;AC=3;AF=0.5;AN=6;AO=30;CIGAR=1X;DP=110;DPB=110;DPRA=0;EPP=68.1545;EPPR=174.557;GTI=0;LEN=1;MEANALT=1.33333;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=1190;QR=3141;RO=79;RPL=0;RPP=68.1545;RPPR=174.557;RPR=30;RUN=1;SAF=30;SAP=68.1545;SAR=0;SRF=79;SRP=174.557;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:35:17,17:17:681:17:668:-50.1065,0,-51.2762 0/1:26:17,9:17:672:9:358:-24.7544,0,-52.98 0/1:49:45,4:45:1788:4:164:-0.399429,0,-146.385 dDocent_Contig_15259 13 . T G 1305.8 . AB=0.39604;ABP=12.4917;AC=4;AF=0.666667;AN=6;AO=40;CIGAR=1M1X2M;DP=101;DPB=101;DPRA=0;EPP=89.8692;EPPR=85.5263;GTI=0;LEN=1;MEANALT=3.33333;MQM=58.95;MQMR=60;NS=3;NUMALT=4;ODDS=0;PAIRED=0.625;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=1604;QR=1514;RO=38;RPL=0;RPP=89.8692;RPPR=85.5263;RPR=40;RUN=1;SAF=40;SAP=89.8692;SAR=0;SRF=38;SRP=85.5263;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|1:40:14,4,4,0,17:14:555:4,4,0,17:156,60,0,685:-52.3389,-43.7342,-88.2312,-53.4069,-86.2773,-97.8851,-56.5534,-89.4354,-99.0892,-102.25,0,-32.9421,-42.6225,-45.7644,-40.6469 1|1:26:4,3,0,9,10:4:159:3,0,9,10:121,0,347,403:-47.201,-38.437,-50.6251,-48.4051,-51.5282,-61.4961,-20.0909,-23.213,-33.1803,-30.471,-15.22,-18.3431,-28.3129,0,-25.3026 0|1:35:20,1,1,0,13:20:800:1,1,0,13:40,9,0,516:-36.5631,-40.0661,-105.681,-42.3421,-105.728,-107.946,-42.5837,-105.982,-108.247,-108.501,0,-63.5734,-65.8434,-66.0917,-62.1784 dDocent_Contig_15260 107 . N T 97.967 . AB=0;ABP=0;AC=2;AF=1;AN=2;AO=3;CIGAR=1X;DP=3;DPB=3;DPRA=0;EPP=9.52472;EPPR=0;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=0;NS=1;NUMALT=1;ODDS=6.68461;PAIRED=1;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=105;QR=0;RO=0;RPL=0;RPP=9.52472;RPPR=0;RPR=3;RUN=1;SAF=0;SAP=9.52472;SAR=3;SRF=0;SRP=0;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL ./.:.:.:.:.:.:.:. ./.:.:.:.:.:.:.:. 1/1:3:0,3:0:0:3:105:-9.79616,-0.90309,0 dDocent_Contig_15261 12 . A G 274.264 . AB=0.205128;ABP=32.4644;AC=4;AF=0.666667;AN=6;AO=10;CIGAR=1X4M;DP=41;DPB=41;DPRA=0;EPP=24.725;EPPR=55.1256;GTI=0;LEN=1;MEANALT=1.66667;MQM=50.3;MQMR=60;NS=3;NUMALT=2;ODDS=0;PAIRED=0.8;PAIREDR=0.875;PAO=0;PQA=0;PQR=0;PRO=0;QA=368;QR=928;RO=24;RPL=0;RPP=24.725;RPPR=55.1256;RPR=10;RUN=1;SAF=10;SAP=24.725;SAR=0;SRF=24;SRP=55.1256;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|1:28:19,6,2:19:736:6,2:235,52:-5.37268,0,-58.7984,-7.27375,-56.8014,-67.2496 0|1:11:5,0,6:5:192:0,6:0,235:-17.9205,-19.4257,-35.1854,0,-16.1445,-14.3383 1|1:2:0,0,2:0:0:0,2:0,81:-7.65532,-7.65532,-7.65532,-0.60206,-0.60206,0 dDocent_Contig_15262 38 . C A 3957.77 . AB=0.0595238;ABP=144.57;AC=0;AF=0;AN=6;AO=5;CIGAR=1M1X1M1X3M1X;DP=201;DPB=201.625;DPRA=0;EPP=13.8677;EPPR=50.7827;GTI=0;LEN=1;MEANALT=8;MQM=60;MQMR=60;NS=3;NUMALT=8;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=197;QR=869;RO=22;RPL=0;RPP=13.8677;RPPR=50.7827;RPR=5;RUN=1;SAF=5;SAP=13.8677;SAR=0;SRF=22;SRP=50.7827;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|0:84:15,0,5,4,3,3,0,1,49:15:591:0,5,4,3,3,0,1,49:0,197,160,122,121,0,40,1939:-155.035,-159.55,-208.171,-143.343,-191.963,-190.458,-146.37,-194.99,-178.783,-193.786,-149.487,-198.107,-181.9,-184.927,-197.204,-149.576,-198.196,-181.989,-185.016,-188.133,-197.293,-159.55,-208.171,-191.963,-194.99,-198.107,-198.196,-208.171,-156.255,-204.876,-188.668,-191.695,-194.812,-194.901,-204.876,-204.575,0,-48.6184,-32.4116,-35.4377,-38.5543,-38.6436,-48.6184,-45.3232,-33.8679 0|0:66:6,0,0,4,2,5,0,7,39:6:237:0,0,4,2,5,0,7,39:0,0,159,78,197,0,248,1556:-127.024,-128.83,-148.334,-128.83,-148.334,-148.334,-115.739,-135.243,-135.243,-134.038,-122.419,-141.922,-141.922,-128.831,-141.32,-112.623,-132.126,-132.126,-119.035,-125.715,-130.621,-128.83,-148.334,-148.334,-135.243,-141.922,-132.126,-148.334,-108.64,-128.143,-128.143,-115.052,-121.732,-111.936,-128.143,-126.036,-0.678784,-20.1863,-20.1863,-7.09227,-13.7738,-3.97556,-20.1863,0,-8.44608 0|0:51:1,3,0,0,5,0,3,0,32:1:41:3,0,0,5,0,3,0,32:117,0,0,203,0,121,0,1288:-119.211,-109.896,-112.377,-119.512,-113.28,-122.896,-119.512,-113.28,-122.896,-122.896,-102.769,-96.5371,-106.154,-106.154,-104.648,-119.512,-113.28,-122.896,-122.896,-106.154,-122.896,-109.538,-103.306,-112.922,-112.922,-96.1791,-112.922,-112.019,-119.512,-113.28,-122.896,-122.896,-106.154,-122.896,-112.922,-122.896,-13.3597,-7.12912,-16.7443,-16.7443,0,-16.7443,-6.76958,-16.7443,-7.11138 dDocent_Contig_15264 35 . C G 35.4839 . AB=0.25;ABP=7.35324;AC=1;AF=0.166667;AN=6;AO=2;CIGAR=1X;DP=29;DPB=29;DPRA=0.761905;EPP=7.35324;EPPR=61.6401;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=82;QR=1075;RO=27;RPL=0;RPP=7.35324;RPPR=61.6401;RPR=2;RUN=1;SAF=2;SAP=7.35324;SAR=0;SRF=27;SRP=61.6401;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:20:20,0:20:797:0:0:0,-6.0206,-72.046 0/0:1:1,0:1:41:0:0:0,-0.30103,-4.09457 0/1:8:6,2:6:237:2:82:-5.37144,0,-19.2921 dDocent_Contig_15265 24 . A G 264.032 . AB=0.222222;ABP=39.2015;AC=1;AF=0.166667;AN=6;AO=12;CIGAR=1X;DP=93;DPB=93;DPRA=2.76923;EPP=29.068;EPPR=178.9;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=487;QR=3235;RO=81;RPL=0;RPP=29.068;RPPR=178.9;RPR=12;RUN=1;SAF=12;SAP=29.068;SAR=0;SRF=81;SRP=178.9;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:54:42,12:42:1683:12:487:-27.926,0,-135.433 0/0:9:9,0:9:363:0:0:0,-2.70927,-33.0343 0/0:30:30,0:30:1189:0:0:0,-9.0309,-107.281 dDocent_Contig_15266 98 . N G 53.1496 . AB=0;ABP=0;AC=4;AF=1;AN=4;AO=3;CIGAR=1X;DP=3;DPB=3;DPRA=0;EPP=9.52472;EPPR=0;GTI=0;LEN=1;MEANALT=1;MQM=17.6667;MQMR=0;NS=2;NUMALT=1;ODDS=0;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=103;QR=0;RO=0;RPL=3;RPP=9.52472;RPPR=0;RPR=0;RUN=1;SAF=3;SAP=9.52472;SAR=0;SRF=0;SRP=0;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL ./.:.:.:.:.:.:.:. 1/1:1:0,1:0:0:1:34:-2.92368,-0.30103,0 1/1:2:0,2:0:0:2:69:-2.08659,-0.60206,0 dDocent_Contig_15268 90 . G A 1306.01 . AB=0.877193;ABP=73.4498;AC=2;AF=0.333333;AN=6;AO=50;CIGAR=1X;DP=62;DPB=62;DPRA=5.7;EPP=111.584;EPPR=29.068;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=1663;QR=409;RO=12;RPL=50;RPP=111.584;RPPR=29.068;RPR=0;RUN=1;SAF=50;SAP=111.584;SAR=0;SRF=12;SRP=29.068;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:47:5,42:5:165:42:1391:-111.331,0,-1.02686 0/0:5:5,0:5:175:0:0:0,-1.50515,-16.0937 0/1:10:2,8:2:69:8:272:-21.8007,0,-3.54236 dDocent_Contig_15270 60 . T C 316.854 . AB=0.461538;ABP=3.34437;AC=2;AF=0.333333;AN=6;AO=12;CIGAR=1X;DP=27;DPB=27;DPRA=13;EPP=29.068;EPPR=35.5824;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=0.0833333;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=470;QR=610;RO=15;RPL=12;RPP=29.068;RPPR=35.5824;RPR=0;RUN=1;SAF=12;SAP=29.068;SAR=0;SRF=15;SRP=35.5824;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:16:8,8:8:326:8:317:-24.0799,0,-24.8934 0/0:1:1,0:1:38:0:0:0,-0.30103,-3.79727 0/1:10:6,4:6:246:4:153:-11.1276,0,-19.5098 dDocent_Contig_15271 9 . C T 97.0581 . AB=0.25;ABP=13.8677;AC=2;AF=0.333333;AN=6;AO=5;CIGAR=1X;DP=41;DPB=41;DPRA=0.47619;EPP=13.8677;EPPR=81.1833;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=193;QR=1389;RO=36;RPL=0;RPP=13.8677;RPPR=81.1833;RPR=5;RUN=1;SAF=5;SAP=13.8677;SAR=0;SRF=36;SRP=81.1833;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:21:21,0:21:816:0:0:0,-6.32163,-73.7651 0/1:11:10,1:10:381:1:39:-0.585235,0,-31.3325 0/1:9:5,4:5:192:4:154:-11.5242,0,-14.9407 dDocent_Contig_15272 40 . A C 35.4839 . AB=0.25;ABP=7.35324;AC=1;AF=0.166667;AN=6;AO=2;CIGAR=2X;DP=34;DPB=34;DPRA=0.615385;EPP=7.35324;EPPR=72.4974;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=82;QR=1278;RO=32;RPL=0;RPP=7.35324;RPPR=72.4974;RPR=2;RUN=1;SAF=2;SAP=7.35324;SAR=0;SRF=32;SRP=72.4974;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|0:25:25,0:25:996:0:0:0,-7.52575,-89.9379 0|0:1:1,0:1:41:0:0:0,-0.30103,-4.09457 0|1:8:6,2:6:241:2:82:-5.37144,0,-19.6586 dDocent_Contig_15273 62 . A T 960.902 . AB=0.431373;ABP=7.18293;AC=2;AF=0.333333;AN=6;AO=44;CIGAR=1M3I8M1X10M;DP=102;DPB=109.05;DPRA=0;EPP=98.5551;EPPR=111.584;GTI=0;LEN=1;MEANALT=3;MQM=60;MQMR=60;NS=3;NUMALT=2;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=1406;QR=1823;RO=50;RPL=44;RPP=98.5551;RPPR=111.584;RPR=0;RUN=1;SAF=44;SAP=98.5551;SAR=0;SRF=50;SRP=111.584;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|1:71:31,39,0:31:1144:39,0:1241,0:-90.7751,0,-82.0696,-100.107,-93.8098,-193.7 0|0:8:2,2,3:2:74:2,3:68,105:-7.99105,-3.05719,-8.53912,0,-0.558035,-5.19889 0|1:23:17,3,1:17:605:3,1:97,35:-2.78734,0,-48.5664,-5.03579,-46.6205,-54.144 dDocent_Contig_15274 132 . A T 275.718 . AB=0.361111;ABP=9.04217;AC=2;AF=0.5;AN=4;AO=13;CIGAR=1X1M1D1X;DP=36;DPB=32;DPRA=0;EPP=31.2394;EPPR=46.4397;GTI=0;LEN=1;MEANALT=2;MQM=60;MQMR=60;NS=2;NUMALT=2;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=458;QR=754;RO=20;RPL=0;RPP=31.2394;RPPR=46.4397;RPR=13;RUN=1;SAF=0;SAP=31.2394;SAR=13;SRF=0;SRP=46.4397;SRR=20;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|1:17:6,9,2:6:227:9,2:318,74:-24.0787,0,-15.9051,-19.8278,-12.5624,-37.8439 .:.:.:.:.:.:.:. 0|1:19:14,4,1:14:527:4,1:140,33:-7.19214,0,-42.0206,-8.74235,-40.5596,-51.6433 dDocent_Contig_15275 13 . C A 1240.71 . AB=0.702128;ABP=19.6891;AC=4;AF=0.666667;AN=6;AO=50;CIGAR=1X2M1X1M1D1M;DP=65;DPB=57.8571;DPRA=0;EPP=111.584;EPPR=35.5824;GTI=0;LEN=1;MEANALT=1;MQM=34.84;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=0;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=1882;QR=594;RO=15;RPL=0;RPP=111.584;RPPR=35.5824;RPR=50;RUN=1;SAF=50;SAP=111.584;SAR=0;SRF=15;SRP=35.5824;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|1:25:8,17:8:321:17:640:-45.4288,0,-21.7329 0|1:22:6,16:6:233:16:600:-37.9334,0,-14.7166 1|1:18:1,17:1:40:17:642:-44.232,-1.42286,0 dDocent_Contig_15276 26 . G A 1057.52 . AB=0.15;ABP=151.973;AC=0;AF=0;AN=6;AO=21;CIGAR=1X3M1X;DP=156;DPB=156;DPRA=0;EPP=48.6112;EPPR=161.528;GTI=0;LEN=1;MEANALT=3.5;MQM=50.0952;MQMR=60;NS=3;NUMALT=3;ODDS=2.77556e-17;PAIRED=0.190476;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=823;QR=2856;RO=73;RPL=0;RPP=48.6112;RPPR=161.528;RPR=21;RUN=1;SAF=21;SAP=48.6112;SAR=0;SRF=73;SRP=161.528;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|0:96:38,11,19,27:38:1489:11,19,27:421,748,1086:-71.056,-47.948,-167.071,-21.5498,-109.44,-138.267,0,-87.8864,-61.4908,-114.304 0|0:16:14,2,0,0:14:531:2,0,0:79,0,0:-2.68115,0,-43.3114,-6.89557,-43.9135,-50.4164,-6.89557,-43.9135,-50.4164,-50.4164 0|0:44:21,8,2,13:21:836:8,2,13:306,75,531:-37.509,-18.7313,-85.1545,-37.7245,-81.456,-105.957,0,-43.7432,-62.7394,-64.9331 dDocent_Contig_15277 53 . C T 712.251 . AB=0.519231;ABP=3.17734;AC=3;AF=0.5;AN=6;AO=27;CIGAR=1X;DP=52;DPB=52;DPRA=0;EPP=61.6401;EPPR=57.2971;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=1015;QR=997;RO=25;RPL=27;RPP=61.6401;RPPR=57.2971;RPR=0;RUN=1;SAF=27;SAP=61.6401;SAR=0;SRF=25;SRP=57.2971;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:25:9,16:9:366:16:588:-45.7076,0,-25.7794 0/1:10:5,5:5:202:5:197:-15.0957,0,-15.5516 0/1:17:11,6:11:429:6:230:-15.9447,0,-33.8428 dDocent_Contig_15278 34 . G A 196.286 . AB=0.466667;ABP=3.15506;AC=1;AF=0.25;AN=4;AO=7;CIGAR=1X;DP=22;DPB=22;DPRA=2.14286;EPP=18.2106;EPPR=35.5824;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=2;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=283;QR=609;RO=15;RPL=0;RPP=18.2106;RPPR=35.5824;RPR=7;RUN=1;SAF=7;SAP=18.2106;SAR=0;SRF=15;SRP=35.5824;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:15:8,7:8:323:7:283:-21.3276,0,-24.9237 ./.:.:.:.:.:.:.:. 0/0:7:7,0:7:286:0:0:0,-2.10721,-26.1148 dDocent_Contig_15280 81 . A G 103.161 . AB=0.263158;ABP=12.2676;AC=1;AF=0.166667;AN=6;AO=5;CIGAR=1X;DP=33;DPB=33;DPRA=2.71429;EPP=13.8677;EPPR=63.8115;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=191;QR=1043;RO=28;RPL=5;RPP=13.8677;RPPR=63.8115;RPR=0;RUN=1;SAF=5;SAP=13.8677;SAR=0;SRF=28;SRP=63.8115;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:19:14,5:14:530:5:191:-11.839,0,-42.3244 0/0:6:6,0:6:230:0:0:0,-1.80618,-21.0668 0/0:8:8,0:8:283:0:0:0,-2.40824,-25.8118 dDocent_Contig_15281 33 . A G 88.1635 . AB=0.14;ABP=59.2949;AC=1;AF=0.166667;AN=6;AO=7;CIGAR=1X;DP=66;DPB=66;DPRA=6.25;EPP=18.2106;EPPR=131.127;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=278;QR=2309;RO=59;RPL=0;RPP=18.2106;RPPR=131.127;RPR=7;RUN=1;SAF=7;SAP=18.2106;SAR=0;SRF=59;SRP=131.127;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:50:43,7:43:1671:7:278:-10.3389,0,-135.582 0/0:2:2,0:2:77:0:0:0,-0.60206,-7.3082 0/0:14:14,0:14:561:0:0:0,-4.21442,-50.8337 dDocent_Contig_15283 35 . A T 1581.79 . AB=0.223404;ABP=65.4748;AC=4;AF=0.666667;AN=6;AO=21;CIGAR=1M1X4M;DP=94;DPB=98.1667;DPRA=0;EPP=48.6112;EPPR=44.2683;GTI=0;LEN=1;MEANALT=3.33333;MQM=60;MQMR=60;NS=3;NUMALT=4;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=842;QR=735;RO=19;RPL=0;RPP=48.6112;RPPR=44.2683;RPR=21;RUN=1;SAF=21;SAP=48.6112;SAR=0;SRF=19;SRP=44.2683;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|1:27:9,8,0,5,4:9:345:8,0,5,4:325,0,195,158:-24.1025,0,-25.898,-26.8117,-28.3062,-55.1171,-10.7864,-12.2769,-39.0893,-37.5841,-13.812,-15.3037,-42.1161,-26.0884,-40.912 0|1:34:6,23,2,0,3:6:234:23,2,0,3:858,75,0,122:-68.4059,0,-12.3082,-64.0694,-13.0928,-82.7038,-70.2121,-19.2319,-83.3059,-89.4484,-60.1453,-9.16313,-73.2398,-79.3825,-78.4795 1|1:33:4,12,3,0,14:4:156:12,3,0,14:473,122,0,562:-71.194,-33.4882,-42.6967,-62.334,-36.2447,-74.253,-72.3981,-46.309,-75.1561,-85.2202,-26.0896,0,-28.8461,-38.9114,-34.697 dDocent_Contig_15285 14 . C A 383.562 . AB=0.218391;ABP=62.9379;AC=3;AF=0.5;AN=6;AO=19;CIGAR=1X;DP=87;DPB=87;DPRA=0;EPP=44.2683;EPPR=150.67;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=6.93889e-18;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=766;QR=2660;RO=68;RPL=0;RPP=44.2683;RPPR=150.67;RPR=19;RUN=1;SAF=19;SAP=44.2683;SAR=0;SRF=68;SRP=150.67;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:41:34,7:34:1338:7:283:-13.5008,0,-108.33 0/1:7:5,2:5:200:2:81:-5.57852,0,-16.2723 0/1:39:29,10:29:1122:10:402:-24.7997,0,-89.5193 dDocent_Contig_15286 7 . A G 110.678 . AB=0.185185;ABP=49.4959;AC=3;AF=0.5;AN=6;AO=10;CIGAR=1X;DP=54;DPB=54;DPRA=0;EPP=24.725;EPPR=98.5551;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=3.46945e-18;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=333;QR=1689;RO=44;RPL=0;RPP=24.725;RPPR=98.5551;RPR=10;RUN=1;SAF=10;SAP=24.725;SAR=0;SRF=44;SRP=98.5551;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:17:15,2:15:581:2:62:-0.770982,0,-47.5157 0/1:9:8,1:8:297:1:38:-1.088,0,-24.3716 0/1:28:21,7:21:811:7:233:-12.8662,0,-64.8869 dDocent_Contig_15287 32 . C A 30.5954 . AB=0.222222;ABP=9.04217;AC=1;AF=0.166667;AN=6;AO=2;CIGAR=1X;DP=52;DPB=52;DPRA=0.418605;EPP=7.35324;EPPR=111.584;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=80;QR=1998;RO=50;RPL=0;RPP=7.35324;RPPR=111.584;RPR=2;RUN=1;SAF=2;SAP=7.35324;SAR=0;SRF=50;SRP=111.584;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:42:42,0:42:1680:0:0:0,-12.6433,-151.427 0/0:1:1,0:1:35:0:0:0,-0.30103,-3.49863 0/1:9:7,2:7:283:2:80:-4.8823,0,-23.1341 dDocent_Contig_15288 20 . G C 36.7884 . AB=0.333333;ABP=4.45795;AC=1;AF=0.166667;AN=6;AO=2;CIGAR=1X;DP=66;DPB=66;DPRA=0.2;EPP=7.35324;EPPR=141.985;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=54.7969;NS=3;NUMALT=1;ODDS=0;PAIRED=0.5;PAIREDR=0.46875;PAO=0;PQA=0;PQR=0;PRO=0;QA=77;QR=2477;RO=64;RPL=0;RPP=7.35324;RPPR=141.985;RPR=2;RUN=1;SAF=2;SAP=7.35324;SAR=0;SRF=64;SRP=141.985;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:31:31,0:31:1209:0:0:0,-9.33193,-108.736 0/1:6:4,2:4:161:2:77:-5.50265,0,-13.0687 0/0:29:29,0:29:1107:0:0:0,-8.72987,-98.9158 dDocent_Contig_15289 54 . A G 1174.99 . AB=0.589744;ABP=8.46682;AC=3;AF=0.5;AN=6;AO=46;CIGAR=1X;DP=78;DPB=78;DPRA=0;EPP=102.898;EPPR=72.4974;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=1617;QR=1168;RO=32;RPL=46;RPP=102.898;RPPR=72.4974;RPR=0;RUN=1;SAF=46;SAP=102.898;SAR=0;SRF=32;SRP=72.4974;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:46:17,29:17:617:29:1026:-78.7979,0,-42.0151 0/1:10:7,3:7:262:3:103:-6.59935,0,-20.9275 0/1:22:8,14:8:289:14:488:-37.6247,0,-19.7338 dDocent_Contig_15290 7 . A C 100.498 . AB=0.170732;ABP=41.6201;AC=2;AF=0.333333;AN=6;AO=7;CIGAR=1X;DP=47;DPB=47;DPRA=3.41667;EPP=18.2106;EPPR=89.8692;GTI=0;LEN=1;MEANALT=1;MQM=54;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=0;PAIREDR=0.475;PAO=0;PQA=0;PQR=0;PRO=0;QA=267;QR=1538;RO=40;RPL=0;RPP=18.2106;RPPR=89.8692;RPR=7;RUN=1;SAF=7;SAP=18.2106;SAR=0;SRF=40;SRP=89.8692;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:32:26,6:26:1000:6:232:-11.5639,0,-80.6782 0/0:6:6,0:6:232:0:0:0,-1.80618,-21.2489 0/1:9:8,1:8:306:1:35:-0.785299,0,-25.1912 dDocent_Contig_15292 9 . C T 94.259 . AB=0.222222;ABP=21.1059;AC=2;AF=0.333333;AN=6;AO=9;CIGAR=2X;DP=60;DPB=60;DPRA=0;EPP=22.5536;EPPR=113.755;GTI=0;LEN=1;MEANALT=1;MQM=56.2222;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=0.888889;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=342;QR=1978;RO=51;RPL=0;RPP=22.5536;RPPR=113.755;RPR=9;RUN=1;SAF=9;SAP=22.5536;SAR=0;SRF=51;SRP=113.755;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|0:33:30,3:30:1159:3:116:0,-0.172137,-94.8381 0|1:10:7,3:7:276:3:107:-6.9699,0,-22.1994 0|1:17:14,3:14:543:3:119:-5.97788,0,-44.0943 dDocent_Contig_15293 126 . C T 37.9073 . AB=0.16;ABP=28.1125;AC=2;AF=0.333333;AN=6;AO=4;CIGAR=1X;DP=35;DPB=35;DPRA=1.25;EPP=11.6962;EPPR=70.3259;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=155;QR=1172;RO=31;RPL=0;RPP=11.6962;RPPR=70.3259;RPR=4;RUN=1;SAF=0;SAP=11.6962;SAR=4;SRF=0;SRP=70.3259;SRR=31;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:19:16,3:16:590:3:117:-5.19081,0,-47.708 0/1:6:5,1:5:194:1:38:-1.99109,0,-16.0267 0/0:10:10,0:10:388:0:0:0,-3.0103,-35.2779 dDocent_Contig_15294 22 . T A 172.3 . AB=0.466667;ABP=3.15506;AC=1;AF=0.166667;AN=6;AO=7;CIGAR=1X;DP=73;DPB=73;DPRA=0.517241;EPP=18.2106;EPPR=146.327;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=8.67362e-19;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=258;QR=2630;RO=66;RPL=0;RPP=18.2106;RPPR=146.327;RPR=7;RUN=1;SAF=7;SAP=18.2106;SAR=0;SRF=66;SRP=146.327;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:48:48,0:48:1905:0:0:0,-14.4494,-171.648 0/1:15:8,7:8:321:7:258:-19.0539,0,-24.7421 0/0:10:10,0:10:404:0:0:0,-3.0103,-36.7189 dDocent_Contig_15295 40 . A G 226.743 . AB=0.25;ABP=11.6962;AC=3;AF=0.5;AN=6;AO=8;CIGAR=1X;DP=27;DPB=27;DPRA=1.42857;EPP=20.3821;EPPR=44.2683;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=0.875;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=314;QR=752;RO=19;RPL=0;RPP=20.3821;RPPR=44.2683;RPR=8;RUN=1;SAF=8;SAP=20.3821;SAR=0;SRF=19;SRP=44.2683;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:16:12,4:12:475:4:157:-9.6907,0,-38.2834 0/0:7:7,0:7:277:0:0:0,-2.10721,-25.2997 1/1:4:0,4:0:0:4:157:-14.5064,-1.20412,0 dDocent_Contig_15296 7 . A C 141.484 . AB=0.298851;ABP=33.5856;AC=3;AF=0.5;AN=6;AO=26;CIGAR=1X5M1X;DP=87;DPB=87;DPRA=0;EPP=59.4686;EPPR=120.27;GTI=0;LEN=1;MEANALT=2.33333;MQM=21.6538;MQMR=60;NS=3;NUMALT=2;ODDS=0;PAIRED=0;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=563;QR=2120;RO=54;RPL=0;RPP=59.4686;RPPR=120.27;RPR=26;RUN=1;SAF=26;SAP=59.4686;SAR=0;SRF=54;SRP=120.27;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|1:51:37,2,11:37:1452:2,11:80,236:-3.83922,-12.706,-131.679,0,-117.36,-116.313 0|1:12:4,3,5:4:155:3,5:117,110:-5.8674,-3.94443,-15.8629,0,-9.82916,-11.3645 0|1:24:13,1,10:13:513:1,10:39,217:-9.96258,-13.0131,-55.0407,0,-41.6078,-39.4466 dDocent_Contig_15297 9 . C T 185.223 . AB=0.307692;ABP=11.3621;AC=1;AF=0.166667;AN=6;AO=8;CIGAR=1X;DP=78;DPB=78;DPRA=1;EPP=20.3821;EPPR=155.013;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=309;QR=2712;RO=70;RPL=0;RPP=20.3821;RPPR=155.013;RPR=8;RUN=1;SAF=8;SAP=20.3821;SAR=0;SRF=70;SRP=155.013;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:44:44,0:44:1700:0:0:0,-13.2453,-153.258 0/0:8:8,0:8:312:0:0:0,-2.40824,-28.4449 0/1:26:18,8:18:700:8:309:-20.3462,0,-55.5073 dDocent_Contig_15298 15 . C A 170.691 . AB=0.08;ABP=79.6198;AC=3;AF=0.5;AN=6;AO=4;CIGAR=1X3M;DP=72;DPB=72;DPRA=0;EPP=11.6962;EPPR=126.784;GTI=0;LEN=1;MEANALT=2;MQM=60;MQMR=60;NS=3;NUMALT=2;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=162;QR=2276;RO=57;RPL=0;RPP=11.6962;RPPR=126.784;RPR=4;RUN=1;SAF=4;SAP=11.6962;SAR=0;SRF=57;SRP=126.784;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|1:50:42,4,4:42:1683:4,4:162,162:-0.715067,0,-137.448,-0.000209662,-125.294,-137.448 0|1:10:4,6,0:4:153:6,0:239,0:-18.8749,0,-11.1299,-20.079,-12.9361,-32.6266 0|1:12:11,1,0:11:440:1,0:40,0:-0.383319,0,-36.3434,-3.69465,-36.6444,-39.9395 dDocent_Contig_15299 34 . T A 259.256 . AB=0.4;ABP=5.18177;AC=1;AF=0.25;AN=4;AO=10;CIGAR=1X1M1X;DP=49;DPB=49;DPRA=1.04167;EPP=24.725;EPPR=87.6977;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=2;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=390;QR=1535;RO=39;RPL=0;RPP=24.725;RPPR=87.6977;RPR=10;RUN=1;SAF=10;SAP=24.725;SAR=0;SRF=39;SRP=87.6977;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|0:24:24,0:24:949:0:0:0,-7.22472,-85.7171 .:.:.:.:.:.:.:. 0|1:25:15,10:15:586:10:390:-27.9256,0,-45.5538 dDocent_Contig_15300 9 . C T 45.7236 . AB=0.2;ABP=14.7363;AC=1;AF=0.166667;AN=6;AO=12;CIGAR=1X;DP=160;DPB=160;DPRA=0;EPP=29.068;EPPR=324.388;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=0.993243;PAO=0;PQA=0;PQR=0;PRO=0;QA=456;QR=5744;RO=148;RPL=0;RPP=29.068;RPPR=324.388;RPR=12;RUN=1;SAF=12;SAP=29.068;SAR=0;SRF=148;SRP=324.388;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:91:83,8:83:3228:8:300:0,-0.038774,-263.302 0/1:15:12,3:12:458:3:117:-6.39493,0,-37.0534 0/0:54:53,1:53:2058:1:39:0,-12.3591,-181.552 dDocent_Contig_15301 64 . C T 137.943 . AB=0.4;ABP=4.31318;AC=2;AF=0.333333;AN=6;AO=6;CIGAR=1X;DP=21;DPB=21;DPRA=1.25;EPP=16.0391;EPPR=35.5824;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=1.73472e-18;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=231;QR=602;RO=15;RPL=6;RPP=16.0391;RPPR=35.5824;RPR=0;RUN=1;SAF=6;SAP=16.0391;SAR=0;SRF=15;SRP=35.5824;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:11:6,5:6:245:5:202:-15.2507,0,-19.1181 0/0:6:6,0:6:241:0:0:0,-1.80618,-22.0663 0/1:4:3,1:3:116:1:29:-1.69554,0,-9.61358 dDocent_Contig_15302 13 . C T 115.017 . AB=0.277778;ABP=10.7311;AC=1;AF=0.166667;AN=6;AO=6;CIGAR=1X;DP=40;DPB=40;DPRA=4.5;EPP=16.0391;EPPR=76.8404;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=245;QR=1377;RO=34;RPL=0;RPP=16.0391;RPPR=76.8404;RPR=6;RUN=1;SAF=6;SAP=16.0391;SAR=0;SRF=34;SRP=76.8404;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:18:17,1:17:687:1:41:0,-1.32397,-58.0634 0/0:4:4,0:4:164:0:0:0,-1.20412,-15.1499 0/1:18:13,5:13:526:5:204:-13.3255,0,-42.268 dDocent_Contig_15303 13 . C T 521.769 . AB=0.306122;ABP=19.0083;AC=4;AF=0.666667;AN=6;AO=19;CIGAR=1X;DP=53;DPB=53;DPRA=0;EPP=44.2683;EPPR=76.8404;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=770;QR=1358;RO=34;RPL=0;RPP=44.2683;RPPR=76.8404;RPR=19;RUN=1;SAF=19;SAP=44.2683;SAR=0;SRF=34;SRP=76.8404;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:33:20,13:20:800:13:525:-37.6625,0,-62.3814 1/1:4:0,4:0:0:4:163:-15.0584,-1.20412,0 0/1:16:14,2:14:558:2:82:-2.9632,0,-45.7471 dDocent_Contig_15304 15 . A G 1120.7 . AB=0.603175;ABP=8.83536;AC=3;AF=0.5;AN=6;AO=38;CIGAR=1X;DP=63;DPB=63;DPRA=0;EPP=85.5263;EPPR=57.2971;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=1488;QR=993;RO=25;RPL=0;RPP=85.5263;RPPR=57.2971;RPR=38;RUN=1;SAF=38;SAP=85.5263;SAR=0;SRF=25;SRP=57.2971;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:32:14,18:14:558:18:724:-55.852,0,-40.928 0/1:12:1,11:1:40:11:428:-35.2568,0,-0.383319 0/1:19:10,9:10:395:9:336:-24.8636,0,-30.1881 dDocent_Contig_15306 8 . A G 379.705 . AB=0.21978;ABP=65.0762;AC=3;AF=0.5;AN=6;AO=20;CIGAR=1X;DP=91;DPB=91;DPRA=0;EPP=46.4397;EPPR=157.185;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=765;QR=2697;RO=71;RPL=0;RPP=46.4397;RPPR=157.185;RPR=20;RUN=1;SAF=20;SAP=46.4397;SAR=0;SRF=71;SRP=157.185;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:62:47,15:47:1775:15:570:-32.9741,0,-141.339 0/1:8:5,3:5:192:3:117:-8.50214,0,-15.2418 0/1:21:19,2:19:730:2:78:-1.08184,0,-59.7091 dDocent_Contig_15307 40 . G A 172.824 . AB=0.333333;ABP=8.80089;AC=2;AF=0.333333;AN=6;AO=8;CIGAR=1X;DP=29;DPB=29;DPRA=2.4;EPP=20.3821;EPPR=48.6112;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=303;QR=823;RO=21;RPL=0;RPP=20.3821;RPPR=48.6112;RPR=8;RUN=1;SAF=8;SAP=20.3821;SAR=0;SRF=21;SRP=48.6112;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:11:5,6:5:204:6:237:-18.3913,0,-15.4327 0/0:5:5,0:5:195:0:0:0,-1.50515,-17.9213 0/1:13:11,2:11:424:2:66:-2.35422,0,-34.5978 dDocent_Contig_15308 28 . A G 171.151 . AB=0.304348;ABP=10.6577;AC=2;AF=0.333333;AN=6;AO=7;CIGAR=1X;DP=44;DPB=44;DPRA=0.547619;EPP=18.2106;EPPR=83.3548;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=282;QR=1484;RO=37;RPL=0;RPP=18.2106;RPPR=83.3548;RPR=7;RUN=1;SAF=7;SAP=18.2106;SAR=0;SRF=37;SRP=83.3548;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:21:21,0:21:833:0:0:0,-6.32163,-75.279 0/1:12:11,1:11:449:1:39:-0.284205,0,-37.1535 0/1:11:5,6:5:202:6:243:-18.9363,0,-15.2502 dDocent_Contig_15309 13 . G A 32.4684 . AB=0.2;ABP=10.8276;AC=1;AF=0.166667;AN=6;AO=2;CIGAR=1X;DP=23;DPB=23;DPRA=1.53846;EPP=7.35324;EPPR=48.6112;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=82;QR=846;RO=21;RPL=0;RPP=7.35324;RPPR=48.6112;RPR=2;RUN=1;SAF=2;SAP=7.35324;SAR=0;SRF=21;SRP=48.6112;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:10:8,2:8:325:2:82:-4.76938,0,-26.6093 0/0:4:4,0:4:162:0:0:0,-1.20412,-14.9667 0/0:9:9,0:9:359:0:0:0,-2.70927,-32.6726 dDocent_Contig_15310 98 . N T 97.967 . AB=0;ABP=0;AC=2;AF=1;AN=2;AO=3;CIGAR=1X;DP=3;DPB=3;DPRA=0;EPP=9.52472;EPPR=0;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=0;NS=1;NUMALT=1;ODDS=6.68461;PAIRED=1;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=105;QR=0;RO=0;RPL=3;RPP=9.52472;RPPR=0;RPR=0;RUN=1;SAF=3;SAP=9.52472;SAR=0;SRF=0;SRP=0;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 1/1:3:0,3:0:0:3:105:-9.79616,-0.90309,0 ./.:.:.:.:.:.:.:. ./.:.:.:.:.:.:.:. dDocent_Contig_15312 15 . A G 497.866 . AB=0.340909;ABP=12.6832;AC=2;AF=0.333333;AN=6;AO=15;CIGAR=1X2M1X;DP=50;DPB=50;DPRA=0;EPP=35.5824;EPPR=50.7827;GTI=0;LEN=1;MEANALT=2;MQM=60;MQMR=60;NS=3;NUMALT=2;ODDS=6.93889e-18;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=588;QR=877;RO=22;RPL=0;RPP=35.5824;RPPR=50.7827;RPR=15;RUN=1;SAF=15;SAP=35.5824;SAR=0;SRF=22;SRP=50.7827;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|1:25:13,7,5:13:517:7,5:277,188:-18.8959,0,-40.4742,-7.41916,-27.1891,-48.481 0|0:6:2,0,4:2:81:0,4:0,160:-12.9776,-13.5797,-20.2605,0,-7.08367,-5.87955 0|1:19:7,8,4:7:279:8,4:311,164:-23.436,0,-20.5609,-11.9998,-9.42874,-33.7766 dDocent_Contig_15313 30 . G C 58.3371 . AB=0.16;ABP=28.1125;AC=1;AF=0.25;AN=4;AO=4;CIGAR=1X;DP=36;DPB=36;DPRA=2.27273;EPP=11.6962;EPPR=72.4974;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=2;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=163;QR=1283;RO=32;RPL=0;RPP=11.6962;RPPR=72.4974;RPR=4;RUN=1;SAF=4;SAP=11.6962;SAR=0;SRF=32;SRP=72.4974;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:25:21,4:21:842:4:163:-7.53268,0,-68.5643 ./.:.:.:.:.:.:.:. 0/0:11:11,0:11:441:0:0:0,-3.31133,-40.0444 dDocent_Contig_15314 24 . C A 682.668 . AB=0.38806;ABP=10.3026;AC=3;AF=0.5;AN=6;AO=26;CIGAR=1X;DP=67;DPB=67;DPRA=0;EPP=59.4686;EPPR=92.0407;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=0.923077;PAIREDR=0.97561;PAO=0;PQA=0;PQR=0;PRO=0;QA=1032;QR=1632;RO=41;RPL=0;RPP=59.4686;RPPR=92.0407;RPR=26;RUN=1;SAF=26;SAP=59.4686;SAR=0;SRF=41;SRP=92.0407;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:44:22,22:22:868:22:876:-65.9046,0,-65.1792 0/1:11:9,2:9:356:2:75:-3.80826,0,-29.0889 0/1:12:10,2:10:408:2:81:-4.07337,0,-33.4682 dDocent_Contig_15315 8 . A G 64.2689 . AB=0.145833;ABP=55.3066;AC=2;AF=0.333333;AN=6;AO=7;CIGAR=1X;DP=56;DPB=56;DPRA=3;EPP=18.2106;EPPR=109.412;GTI=0;LEN=1;MEANALT=1;MQM=56;MQMR=51.5714;NS=3;NUMALT=1;ODDS=0;PAIRED=0.857143;PAIREDR=0.857143;PAO=0;PQA=0;PQR=0;PRO=0;QA=263;QR=1854;RO=49;RPL=0;RPP=18.2106;RPPR=109.412;RPR=7;RUN=1;SAF=7;SAP=18.2106;SAR=0;SRF=49;SRP=109.412;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:22:18,4:18:682:4:156:-7.79278,0,-51.5837 0/1:26:23,3:23:861:3:107:-2.04222,0,-63.7066 0/0:8:8,0:8:311:0:0:0,-2.40824,-25.2011 dDocent_Contig_15316 50 . C G 43.6344 . AB=0.176471;ABP=18.4661;AC=1;AF=0.166667;AN=6;AO=4;CIGAR=1X;DP=36;DPB=36;DPRA=3.1;EPP=11.6962;EPPR=72.4974;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=0.5;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=158;QR=1265;RO=32;RPL=4;RPP=11.6962;RPPR=72.4974;RPR=0;RUN=1;SAF=4;SAP=11.6962;SAR=0;SRF=32;SRP=72.4974;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:17:14,3:14:564:3:118:-5.88538,0,-45.9856 0/0:5:5,0:5:204:0:0:0,-1.50515,-18.744 0/0:14:13,1:13:497:1:40:0,-0.218741,-41.0615 dDocent_Contig_15317 8 . A T 974.031 . AB=0.455696;ABP=4.35716;AC=3;AF=0.5;AN=6;AO=36;CIGAR=1X2M2D6M;DP=79;DPB=71.7273;DPRA=0;EPP=81.1833;EPPR=87.6977;GTI=0;LEN=1;MEANALT=1.33333;MQM=60;MQMR=60;NS=3;NUMALT=2;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=1387;QR=1501;RO=39;RPL=0;RPP=81.1833;RPPR=87.6977;RPR=36;RUN=1;SAF=36;SAP=81.1833;SAR=0;SRF=39;SRP=87.6977;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|1:53:23,26,4:23:879:26,4:997,155:-74.9043,0,-64.2868,-69.0933,-59.3787,-140.007 0|1:9:4,5,0:4:156:5,0:195,0:-15.2149,0,-11.7077,-16.419,-13.2128,-29.2422 0|1:17:12,5,0:12:466:5,0:195,0:-12.8067,0,-37.1723,-16.419,-38.6775,-54.7073 dDocent_Contig_15318 9 . C T 38.646 . AB=0.166667;ABP=26.1727;AC=2;AF=0.333333;AN=6;AO=4;CIGAR=1X;DP=37;DPB=37;DPRA=0.923077;EPP=11.6962;EPPR=74.6689;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=154;QR=1284;RO=33;RPL=0;RPP=11.6962;RPPR=74.6689;RPR=4;RUN=1;SAF=4;SAP=11.6962;SAR=0;SRF=33;SRP=74.6689;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:13:13,0:13:506:0:0:0,-3.91339,-45.8893 0/1:7:6,1:6:234:1:39:-1.78935,0,-19.3239 0/1:17:14,3:14:544:3:115:-5.60738,0,-44.1886 dDocent_Contig_15320 32 . T C 162.249 . AB=0.191489;ABP=41.8658;AC=2;AF=0.333333;AN=6;AO=10;CIGAR=1X;DP=63;DPB=63;DPRA=0;EPP=24.725;EPPR=118.098;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=0.9;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=409;QR=2127;RO=53;RPL=0;RPP=24.725;RPPR=118.098;RPR=10;RUN=1;SAF=10;SAP=24.725;SAR=0;SRF=53;SRP=118.098;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:25:22,3:22:883:3:123:-3.93904,0,-72.2543 0/1:22:16,6:16:643:6:245:-15.8068,0,-51.5818 0/0:16:15,1:15:601:1:41:0,-0.721913,-50.3307 dDocent_Contig_15321 9 . C T 423.961 . AB=0.285714;ABP=28.1373;AC=1;AF=0.166667;AN=6;AO=20;CIGAR=1X;DP=99;DPB=99;DPRA=5.6875;EPP=46.4397;EPPR=172.385;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=48.0385;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=0.666667;PAO=0;PQA=0;PQR=0;PRO=0;QA=773;QR=3004;RO=78;RPL=0;RPP=46.4397;RPPR=172.385;RPR=20;RUN=1;SAF=20;SAP=46.4397;SAR=0;SRF=78;SRP=172.385;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:63:45,18:45:1729:18:695:-43.9189,0,-107.594 0/0:8:7,0:7:272:0:0:0,-2.10721,-22.4344 0/0:28:26,2:26:1003:2:78:0,-1.02537,-79.7885 dDocent_Contig_15322 148 . A T 162.95 . AB=0;ABP=0;AC=2;AF=0.333333;AN=6;AO=5;CIGAR=1X;DP=20;DPB=20;DPRA=0.666667;EPP=13.8677;EPPR=35.5824;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=172;QR=541;RO=15;RPL=0;RPP=13.8677;RPPR=35.5824;RPR=5;RUN=1;SAF=0;SAP=13.8677;SAR=5;SRF=0;SRP=35.5824;SRR=15;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 1/1:5:0,5:0:0:5:172:-15.8179,-1.50515,0 0/0:8:8,0:8:290:0:0:0,-2.40824,-26.4488 0/0:7:7,0:7:251:0:0:0,-2.10721,-22.9369 dDocent_Contig_15323 28 . T C 250.438 . AB=0.315789;ABP=8.61041;AC=0;AF=0;AN=6;AO=6;CIGAR=1M1D2M1D2M1X9M;DP=30;DPB=22.4118;DPRA=2.11111;EPP=16.0391;EPPR=35.5824;GTI=0;LEN=1;MEANALT=2;MQM=18;MQMR=60;NS=3;NUMALT=2;ODDS=0;PAIRED=0;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=108;QR=596;RO=15;RPL=0;RPP=16.0391;RPPR=35.5824;RPR=6;RUN=1;SAF=6;SAP=16.0391;SAR=0;SRF=15;SRP=35.5824;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|0:19:5,6,8:5:198:6,8:108,324:-25.3566,-20.6638,-35.1512,0,-10.2354,-14.0003 0|0:9:9,0,0:9:358:0,0:0,0:0,-2.70927,-32.584,-2.70927,-32.584,-32.584 0|0:2:1,0,1:1:40:0,1:0,38:-3.19521,-3.49624,-6.80124,0,-3.69465,-3.39362 dDocent_Contig_15324 118 . G A 55.4277 . AB=0.333333;ABP=5.18177;AC=1;AF=0.166667;AN=6;AO=3;CIGAR=1X;DP=37;DPB=37;DPRA=0.642857;EPP=9.52472;EPPR=76.8404;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=108;QR=1133;RO=34;RPL=0;RPP=9.52472;RPPR=76.8404;RPR=3;RUN=1;SAF=0;SAP=9.52472;SAR=3;SRF=0;SRP=76.8404;SRR=34;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:27:27,0:27:909:0:0:0,-8.12781,-82.1125 0/0:1:1,0:1:34:0:0:0,-0.30103,-3.39891 0/1:9:6,3:6:190:3:108:-7.3659,0,-14.7009 dDocent_Contig_15325 17 . C A 3273.69 . AB=0.0522388;ABP=469.715;AC=0;AF=0;AN=6;AO=14;CIGAR=3M3I3M1X4M2X1M1X1M1X;DP=268;DPB=274.353;DPRA=0;EPP=33.4109;EPPR=55.1256;GTI=0;LEN=1;MEANALT=12;MQM=25;MQMR=60;NS=3;NUMALT=8;ODDS=0;PAIRED=0;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=350;QR=934;RO=24;RPL=0;RPP=33.4109;RPPR=55.1256;RPR=14;RUN=1;SAF=14;SAP=33.4109;SAR=0;SRF=24;SRP=55.1256;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|0:174:12,0,14,20,3,5,11,5,79:12:467:0,14,20,3,5,11,5,79:0,551,797,116,105,428,125,3136:-264.302,-267.915,-306.295,-222.592,-260.972,-256.758,-219.776,-258.156,-212.834,-252.135,-259.071,-297.451,-252.128,-249.312,-296.548,-261.322,-299.702,-254.38,-251.564,-290.858,-298.197,-232.74,-271.12,-225.797,-222.982,-262.276,-264.528,-267.809,-259.526,-297.906,-252.583,-249.768,-289.062,-291.313,-262.731,-296.4,-9.75162,-48.1374,-2.80779,0,-39.2927,-41.5481,-12.9578,-39.7506,-24.356 0|0:32:4,2,2,5,4,2,3,2,4:4:155:2,2,5,4,2,3,2,4:81,75,194,150,42,122,50,164:-12.3499,-6.88022,-19.0238,-7.40523,-13.4778,-19.5486,-8.35092,-14.421,-14.9461,-19.5867,-1.58995,-7.66331,-8.18833,-9.13445,-13.1328,-10.9243,-16.9958,-17.5207,-18.4658,-11.7074,-23.0656,-3.47843,-9.55172,-10.0767,-11.0209,-4.26166,-13.5952,-15.3221,-10.2031,-16.2748,-16.7997,-17.7445,-10.9862,-20.3177,-12.8741,-22.3449,0,-6.07392,-6.59894,-7.54418,-0.783372,-10.118,-2.672,-9.39682,-11.5439 0|0:62:8,0,14,7,0,2,12,7,5:8:312:0,14,7,0,2,12,7,5:0,565,279,0,42,459,175,201:-56.2129,-58.6211,-84.2734,-12.0212,-37.6795,-33.4651,-43.3778,-69.0297,-22.4356,-66.9224,-58.6211,-84.2734,-37.6795,-69.0297,-84.2734,-55.9879,-81.6396,-35.0466,-66.3969,-81.6396,-81.0375,-20.9475,-46.6036,0,-31.3607,-46.6036,-43.9708,-42.9913,-46.8875,-72.5382,-25.9466,-57.298,-72.5382,-69.9057,-34.8712,-70.431,-42.0504,-67.7043,-21.1066,-52.4607,-67.7043,-65.0708,-30.0321,-55.97,-66.1991 dDocent_Contig_15326 30 . G A 163.2 . AB=0.171429;ABP=68.6508;AC=2;AF=0.333333;AN=6;AO=13;CIGAR=2X;DP=158;DPB=158;DPRA=0;EPP=31.2394;EPPR=313.531;GTI=0;LEN=1;MEANALT=1.66667;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=489;QR=5549;RO=143;RPL=0;RPP=31.2394;RPPR=313.531;RPR=13;RUN=1;SAF=13;SAP=31.2394;SAR=0;SRF=143;SRP=313.531;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|0:88:87,1:87:3377:1:41:0,-22.3961,-299.906 0|1:23:19,3:19:730:3:115:-3.78164,0,-59.0937 0|1:47:37,9:37:1442:9:333:-16.0588,0,-115.77 dDocent_Contig_15327 128 . C A 39.6413 . AB=0.16;ABP=28.1125;AC=1;AF=0.166667;AN=6;AO=7;CIGAR=1X;DP=68;DPB=68;DPRA=5.16667;EPP=18.2106;EPPR=135.47;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=251;QR=2092;RO=61;RPL=0;RPP=18.2106;RPPR=135.47;RPR=7;RUN=1;SAF=0;SAP=18.2106;SAR=7;SRF=0;SRP=135.47;SRR=61;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:37:34,3:34:1187:3:107:0,-1.15594,-97.1556 0/0:6:6,0:6:209:0:0:0,-1.80618,-19.1511 0/1:25:21,4:21:696:4:144:-5.78787,0,-55.4252 dDocent_Contig_15329 8 . A T 125.917 . AB=0.26087;ABP=14.4341;AC=1;AF=0.166667;AN=6;AO=10;CIGAR=1X;DP=173;DPB=173;DPRA=1.34043;EPP=24.725;EPPR=356.96;GTI=0;LEN=1;MEANALT=1;MQM=59.9;MQMR=59.8834;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=388;QR=6215;RO=163;RPL=0;RPP=24.725;RPPR=356.96;RPR=10;RUN=1;SAF=10;SAP=24.725;SAR=0;SRF=163;SRP=356.96;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:103:99,4:99:3776:4:155:0,-16.6806,-325.615 0/1:23:17,6:17:652:6:233:-14.4156,0,-52.0907 0/0:47:47,0:47:1787:0:0:0,-14.1484,-161.082 dDocent_Contig_15330 9 . C G 849.749 . AB=0.553571;ABP=4.40625;AC=3;AF=0.5;AN=6;AO=31;CIGAR=1X;DP=56;DPB=56;DPRA=0;EPP=70.3259;EPPR=57.2971;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=1181;QR=965;RO=25;RPL=0;RPP=70.3259;RPPR=57.2971;RPR=31;RUN=1;SAF=31;SAP=70.3259;SAR=0;SRF=25;SRP=57.2971;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:33:14,19:14:542:19:719:-55.1046,0,-39.1919 0/1:17:8,9:8:306:9:346:-26.3817,0,-22.7829 0/1:6:3,3:3:117:3:116:-9.01152,0,-9.1042 dDocent_Contig_15332 9 . C A 1206.69 . AB=0.422018;ABP=8.76769;AC=3;AF=0.5;AN=6;AO=46;CIGAR=1X;DP=109;DPB=109;DPRA=0;EPP=102.898;EPPR=139.813;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=44.3492;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=0.460317;PAO=0;PQA=0;PQR=0;PRO=0;QA=1755;QR=2419;RO=63;RPL=0;RPP=102.898;RPPR=139.813;RPR=46;RUN=1;SAF=46;SAP=102.898;SAR=0;SRF=63;SRP=139.813;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:63:44,19:44:1679:19:729:-46.9757,0,-116.218 0/1:4:1,3:1:39:3:117:-9.70626,0,-2.69244 0/1:42:18,24:18:701:24:909:-69.4818,0,-41.5073 dDocent_Contig_15333 14 . T C 41.4967 . AB=0.333333;ABP=4.45795;AC=1;AF=0.166667;AN=6;AO=2;CIGAR=1X;DP=24;DPB=24;DPRA=0.666667;EPP=7.35324;EPPR=50.7827;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=82;QR=888;RO=22;RPL=0;RPP=7.35324;RPPR=50.7827;RPR=2;RUN=1;SAF=2;SAP=7.35324;SAR=0;SRF=22;SRP=50.7827;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:5:5,0:5:204:0:0:0,-1.50515,-18.744 0/1:6:4,2:4:163:2:82:-5.9735,0,-13.2522 0/0:13:13,0:13:521:0:0:0,-3.91339,-47.2365 dDocent_Contig_15334 132 . T G 273.998 . AB=0.375;ABP=7.35324;AC=1;AF=0.166667;AN=6;AO=12;CIGAR=1X1M4I7M;DP=52;DPB=63.5556;DPRA=3.2;EPP=29.068;EPPR=74.6689;GTI=0;LEN=1;MEANALT=2;MQM=60;MQMR=57;NS=3;NUMALT=2;ODDS=0;PAIRED=1;PAIREDR=0.939394;PAO=0;PQA=0;PQR=0;PRO=0;QA=403;QR=1095;RO=33;RPL=0;RPP=29.068;RPPR=74.6689;RPR=12;RUN=1;SAF=0;SAP=29.068;SAR=12;SRF=0;SRP=74.6689;SRR=33;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|1:32:13,12,7:13:416:12,7:403,42:-28.9223,0,-25.9201,-32.8027,-29.476,-60.0397 0|0:3:3,0,0:3:101:0,0:0,0:0,-0.90309,-9.4236,-0.90309,-9.4236,-9.4236 0|0:17:17,0,0:17:578:0,0:0,0:0,-5.11751,-52.3427,-5.11751,-52.3427,-52.3427 dDocent_Contig_15335 55 . C A 233.111 . AB=0.175439;ABP=55.1637;AC=4;AF=0.666667;AN=6;AO=12;CIGAR=1X;DP=59;DPB=59;DPRA=0;EPP=29.068;EPPR=105.07;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=476;QR=1862;RO=47;RPL=12;RPP=29.068;RPPR=105.07;RPR=0;RUN=1;SAF=12;SAP=29.068;SAR=0;SRF=47;SRP=105.07;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:41:35,6:35:1389:6:234:-9.08664,0,-112.928 1/1:2:0,2:0:0:2:82:-7.77968,-0.60206,0 0/1:16:12,4:12:473:4:160:-9.96732,0,-38.1011 dDocent_Contig_15336 30 . C A 6391.55 . AB=0.767544;ABP=144.766;AC=4;AF=0.666667;AN=6;AO=204;CIGAR=1X3M;DP=261;DPB=261;DPRA=0;EPP=445.991;EPPR=105.07;GTI=0;LEN=1;MEANALT=2;MQM=60;MQMR=60;NS=3;NUMALT=3;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=7958;QR=1858;RO=47;RPL=0;RPP=445.991;RPPR=105.07;RPR=204;RUN=1;SAF=204;SAP=445.991;SAR=0;SRF=47;SRP=105.07;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|1:150:38,0,0,112:38:1497:0,0,112:0,0,4389:-349.82,-361.259,-484.414,-361.259,-484.414,-484.414,0,-123.548,-123.548,-89.8325 1|1:33:2,0,2,29:2:79:0,2,29:0,50,1131:-94.6569,-95.259,-101.761,-91.9126,-98.4135,-97.8115,-2.14196,-8.72987,-5.45986,0 0|1:78:7,7,1,63:7:282:7,1,63:278,16,2438:-198.141,-177.36,-198.499,-199.113,-199.47,-222.057,0,-0.36152,-22.1368,-4.29492 dDocent_Contig_15338 67 . T G 478.109 . AB=0.666667;ABP=8.80089;AC=2;AF=0.333333;AN=6;AO=16;CIGAR=1X;DP=33;DPB=33;DPRA=1.33333;EPP=37.7539;EPPR=39.9253;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=641;QR=684;RO=17;RPL=16;RPP=37.7539;RPPR=39.9253;RPR=0;RUN=1;SAF=16;SAP=37.7539;SAR=0;SRF=17;SRP=39.9253;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:17:7,10:7:285:10:403:-31.5126,0,-20.9067 0/1:7:1,6:1:41:6:238:-19.6867,0,-1.98736 0/0:9:9,0:9:358:0:0:0,-2.70927,-32.5816 dDocent_Contig_15339 10 . T A 34234.9 . AB=0.366868;ABP=232.55;AC=3;AF=0.5;AN=6;AO=547;CIGAR=1X4M1X;DP=1491;DPB=1491;DPRA=0;EPP=1190.81;EPPR=146.327;GTI=0;LEN=1;MEANALT=12.6667;MQM=56.6819;MQMR=60;NS=3;NUMALT=4;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=20847;QR=2590;RO=66;RPL=0;RPP=1190.81;RPPR=146.327;RPR=547;RUN=1;SAF=547;SAP=1190.81;SAR=0;SRF=66;SRP=146.327;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 1|0:766:45,56,259,81,303:45:1768:56,259,81,303:2242,9902,3238,12044:-1624,-1459.27,-1587.83,-832.037,-799.18,-899.481,-1378.42,-1345.56,-718.325,-1499.45,-660.092,-627.235,0,-546.379,-714.291 1|0:205:5,5,108,12,68:5:197:5,108,12,68:196,4079,485,2666:-533.606,-519.26,-533.962,-202.447,-202.804,-186.143,-495.124,-495.481,-178.667,-507.719,-316.452,-316.809,0,-292.672,-312.189 1|0:520:16,26,180,31,237:16:625:26,180,31,237:1030,6866,1247,9460:-1271.42,-1194.52,-1238.06,-718.552,-688.205,-715.736,-1174.06,-1143.71,-667.748,-1216.1,-506.307,-475.961,0,-455.502,-486.334 dDocent_Contig_15340 10 . T A 330.253 . AB=0.120316;ABP=637.855;AC=2;AF=0.333333;AN=6;AO=65;CIGAR=1X;DP=562;DPB=562;DPRA=0;EPP=144.156;EPPR=1051.83;GTI=0;LEN=1;MEANALT=1.66667;MQM=47.7846;MQMR=59.6294;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=0.987578;PAO=0;PQA=0;PQR=0;PRO=0;QA=2538;QR=19315;RO=483;RPL=0;RPP=144.156;RPPR=1051.83;RPR=65;RUN=1;SAF=65;SAP=144.156;SAR=0;SRF=483;SRP=1051.83;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:331:283,35:283:11339:35:1361:-11.9517,0,-921.626 0/0:55:51,4:51:2023:4:148:0,-4.87211,-170.584 0/1:176:149,26:149:5953:26:1029:-24.5965,0,-475.362 dDocent_Contig_15341 30 . A C 366.647 . AB=0.348837;ABP=11.5447;AC=3;AF=0.5;AN=6;AO=15;CIGAR=1X;DP=43;DPB=43;DPRA=0;EPP=35.5824;EPPR=63.8115;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=600;QR=1054;RO=28;RPL=0;RPP=35.5824;RPPR=63.8115;RPR=15;RUN=1;SAF=15;SAP=35.5824;SAR=0;SRF=28;SRP=63.8115;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:18:13,5:13:489:5:204:-13.3255,0,-38.9297 0/1:8:4,4:4:134:4:154:-11.8221,0,-9.97785 0/1:17:11,6:11:431:6:242:-17.04,0,-34.0251 dDocent_Contig_15343 10 . T A 257.707 . AB=0.355932;ABP=13.6468;AC=2;AF=0.333333;AN=6;AO=22;CIGAR=1X;DP=73;DPB=73;DPRA=0;EPP=50.7827;EPPR=113.755;GTI=0;LEN=1;MEANALT=1;MQM=31.9545;MQMR=36.1569;NS=3;NUMALT=1;ODDS=3.46945e-18;PAIRED=0.409091;PAIREDR=0.490196;PAO=0;PQA=0;PQR=0;PRO=0;QA=879;QR=2052;RO=51;RPL=0;RPP=50.7827;RPPR=113.755;RPR=22;RUN=1;SAF=22;SAP=50.7827;SAR=0;SRF=51;SRP=113.755;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:43:30,13:30:1202:13:518:-15.4334,0,-54.9167 0/1:16:8,8:8:320:8:321:-13.8602,0,-15.3288 0/0:14:13,1:13:530:1:40:0,-3.11492,-32.6267 dDocent_Contig_15344 19 . G C 218.335 . AB=0;ABP=0;AC=2;AF=0.333333;AN=6;AO=9;CIGAR=1X2M27I2M;DP=38;DPB=86.6;DPRA=1.61111;EPP=22.5536;EPPR=65.983;GTI=0;LEN=1;MEANALT=1;MQM=36.4444;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=0;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=326;QR=1132;RO=29;RPL=0;RPP=22.5536;RPPR=65.983;RPR=9;RUN=1;SAF=9;SAP=22.5536;SAR=0;SRF=29;SRP=65.983;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|0:22:20,2:20:777:2:69:0,-0.63942,-64.2704 1|1:7:0,7:0:0:7:257:-21.6571,-2.10721,0 0|0:9:9,0:9:355:0:0:0,-2.70927,-32.312 dDocent_Contig_15345 22 . A G 64.745 . AB=0.210526;ABP=16.8392;AC=2;AF=0.333333;AN=6;AO=4;CIGAR=1X;DP=24;DPB=24;DPRA=1.9;EPP=11.6962;EPPR=46.4397;GTI=0;LEN=1;MEANALT=1;MQM=59.5;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=0;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=155;QR=781;RO=20;RPL=0;RPP=11.6962;RPPR=46.4397;RPR=4;RUN=1;SAF=0;SAP=11.6962;SAR=4;SRF=20;SRP=46.4397;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:5:5,0:5:188:0:0:0,-1.50515,-17.2793 0/1:9:6,3:6:233:3:118:-8.29137,0,-18.6277 0/1:10:9,1:9:360:1:37:-0.687529,0,-29.7511 dDocent_Contig_15346 17 . C A 2782.33 . AB=0.613924;ABP=20.8219;AC=3;AF=0.5;AN=6;AO=97;CIGAR=1M1D6M1X;DP=158;DPB=147.222;DPRA=0;EPP=213.643;EPPR=128.956;GTI=0;LEN=1;MEANALT=1.33333;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=3666;QR=2278;RO=58;RPL=0;RPP=213.643;RPPR=128.956;RPR=97;RUN=1;SAF=97;SAP=213.643;SAR=0;SRF=58;SRP=128.956;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|1:99:32,64:32:1264:64:2408:-187.623,0,-84.7369 0|1:19:6,13:6:232:13:493:-38.9956,0,-15.5267 0|1:40:20,20:20:782:20:765:-57.1376,0,-58.6638 dDocent_Contig_15347 12 . T C 179.69 . AB=0.257143;ABP=20.9405;AC=3;AF=0.5;AN=6;AO=9;CIGAR=1X;DP=35;DPB=35;DPRA=0;EPP=22.5536;EPPR=59.4686;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=365;QR=1057;RO=26;RPL=0;RPP=22.5536;RPPR=59.4686;RPR=9;RUN=1;SAF=9;SAP=22.5536;SAR=0;SRF=26;SRP=59.4686;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:15:12,3:12:491:3:122:-6.85704,0,-40.0255 0/1:10:6,4:6:245:4:161:-11.8652,0,-19.4192 0/1:10:8,2:8:321:2:82:-4.76938,0,-26.2467 dDocent_Contig_15349 23 . G A 8975.64 . AB=0.0327869;ABP=812.614;AC=0;AF=0;AN=6;AO=14;CIGAR=1X1M1D2X3M;DP=427;DPB=425.25;DPRA=0;EPP=33.4109;EPPR=133.299;GTI=0;LEN=1;MEANALT=7;MQM=60;MQMR=60;NS=3;NUMALT=4;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=548;QR=2350;RO=60;RPL=0;RPP=33.4109;RPPR=133.299;RPR=14;RUN=1;SAF=14;SAP=33.4109;SAR=0;SRF=60;SRP=133.299;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|0:224:27,4,3,16,158:27:1072:4,3,16,158:163,108,632,6249:-506.102,-500.782,-587.83,-505.42,-580.225,-592.769,-462.257,-537.062,-541.7,-545.693,0,-74.8075,-79.4474,-36.2828,-40.6932 0|0:74:13,2,4,2,50:13:508:2,4,2,50:76,160,78,1989:-159.85,-157.532,-198.691,-150.584,-186.113,-191.141,-157.352,-192.882,-185.933,-198.511,0,-35.5313,-28.5806,-35.3505,-26.7106 0|0:129:20,8,1,24,70:20:770:8,1,24,70:309,40,962,2762:-237.136,-217.78,-278.582,-239.861,-277.696,-302.771,-164.02,-201.854,-223.935,-220.006,-15.9318,-53.7648,-75.8453,0,-58.0684 dDocent_Contig_15351 23 . A C 43.567 . AB=0.4;ABP=3.44459;AC=1;AF=0.166667;AN=6;AO=2;CIGAR=1X;DP=27;DPB=27;DPRA=0.454545;EPP=7.35324;EPPR=57.2971;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=0;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=81;QR=1009;RO=25;RPL=0;RPP=7.35324;RPPR=57.2971;RPR=2;RUN=1;SAF=2;SAP=7.35324;SAR=0;SRF=25;SRP=57.2971;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:10:10,0:10:405:0:0:0,-3.0103,-36.8104 0/0:12:12,0:12:481:0:0:0,-3.61236,-43.6419 0/1:5:3,2:3:123:2:81:-6.18058,0,-9.95964 dDocent_Contig_15352 16 . C A 52.2259 . AB=0.235294;ABP=13.3567;AC=3;AF=0.5;AN=6;AO=4;CIGAR=1X;DP=17;DPB=17;DPRA=0;EPP=11.6962;EPPR=31.2394;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=1.73472e-18;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=160;QR=531;RO=13;RPL=0;RPP=11.6962;RPPR=31.2394;RPR=4;RUN=1;SAF=4;SAP=11.6962;SAR=0;SRF=13;SRP=31.2394;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:6:5,1:5:204:1:40:-2.1895,0,-16.9379 0/1:4:2,2:2:82:2:80:-6.38767,0,-6.57556 0/1:7:6,1:6:245:1:40:-1.88847,0,-20.3223 dDocent_Contig_15353 82 . G A 93.7306 . AB=0.363636;ABP=4.78696;AC=1;AF=0.166667;AN=6;AO=4;CIGAR=1X;DP=32;DPB=32;DPRA=1.04762;EPP=11.6962;EPPR=63.8115;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=0;PAIREDR=0.892857;PAO=0;PQA=0;PQR=0;PRO=0;QA=157;QR=1047;RO=28;RPL=4;RPP=11.6962;RPPR=63.8115;RPR=0;RUN=1;SAF=4;SAP=11.6962;SAR=0;SRF=28;SRP=63.8115;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:13:13,0:13:491:0:0:0,-3.91339,-44.5331 0/0:8:8,0:8:295:0:0:0,-2.40824,-26.8973 0/1:11:7,4:7:261:4:157:-11.197,0,-20.535 dDocent_Contig_15355 33 . T C 151.251 . AB=0.333333;ABP=7.35324;AC=1;AF=0.166667;AN=6;AO=6;CIGAR=1X;DP=34;DPB=34;DPRA=2.25;EPP=16.0391;EPPR=63.8115;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=241;QR=1119;RO=28;RPL=0;RPP=16.0391;RPPR=63.8115;RPR=6;RUN=1;SAF=6;SAP=16.0391;SAR=0;SRF=28;SRP=63.8115;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:18:12,6:12:481:6:241:-16.6479,0,-38.2203 0/0:6:6,0:6:239:0:0:0,-1.80618,-21.8843 0/0:10:10,0:10:399:0:0:0,-3.0103,-36.2688 dDocent_Contig_15356 18 . T A 94.466 . AB=0.227273;ABP=17.2236;AC=1;AF=0.166667;AN=6;AO=5;CIGAR=2X;DP=34;DPB=34;DPRA=3.66667;EPP=13.8677;EPPR=36.0317;GTI=0;LEN=1;MEANALT=1;MQM=47.4;MQMR=56.8276;NS=3;NUMALT=1;ODDS=1.73472e-18;PAIRED=0;PAIREDR=0.862069;PAO=0;PQA=0;PQR=0;PRO=0;QA=202;QR=1153;RO=29;RPL=0;RPP=13.8677;RPPR=49.8093;RPR=5;RUN=1;SAF=5;SAP=13.8677;SAR=0;SRF=27;SRP=49.8093;SRR=2;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|1:22:17,5:17:675:5:202:-10.9694,0,-54.4581 0|0:5:5,0:5:197:0:0:0,-1.50515,-17.1233 0|0:7:7,0:7:281:0:0:0,-2.10721,-24.6065 dDocent_Contig_15357 22 . A T 120.047 . AB=0.138462;ABP=76.807;AC=1;AF=0.166667;AN=6;AO=11;CIGAR=1X;DP=144;DPB=144;DPRA=0;EPP=26.8965;EPPR=291.816;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=59.8045;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=0.992481;PAO=0;PQA=0;PQR=0;PRO=0;QA=419;QR=5271;RO=133;RPL=0;RPP=26.8965;RPPR=291.816;RPR=11;RUN=1;SAF=11;SAP=26.8965;SAR=0;SRF=133;SRP=291.816;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:73:72,1:72:2832:1:41:0,-17.8806,-250.894 0/0:6:5,1:5:203:1:11:0,-0.706185,-16.8414 0/1:65:56,9:56:2236:9:367:-13.8283,0,-181.837 dDocent_Contig_15358 21 . T A 551.32 . AB=0.327869;ABP=18.709;AC=3;AF=0.5;AN=6;AO=20;CIGAR=1X5M;DP=61;DPB=61;DPRA=0;EPP=46.4397;EPPR=59.4686;GTI=0;LEN=1;MEANALT=1.66667;MQM=60;MQMR=60;NS=3;NUMALT=3;ODDS=0;PAIRED=0.85;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=802;QR=1037;RO=26;RPL=0;RPP=46.4397;RPPR=59.4686;RPR=20;RUN=1;SAF=20;SAP=46.4397;SAR=0;SRF=26;SRP=59.4686;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|1:33:11,5,10,7:11:440:5,10,7:201,391,277:-19.5564,-6.41235,-41.2317,-20.6335,-40.4703,-53.87,0,-19.9005,-34.0845,-34.2341 0|1:12:11,0,0,1:11:435:0,0,1:0,0,41:-0.482207,-3.79354,-39.5792,-3.79354,-39.5792,-39.5792,0,-36.1939,-36.1939,-35.8928 0|1:16:4,0,0,12:4:162:0,0,12:0,0,484:-39.094,-40.2982,-53.6569,-40.2982,-53.6569,-53.6569,0,-13.7628,-13.7628,-10.1505 dDocent_Contig_15359 20 . T C 99.6178 . AB=0.145833;ABP=55.3066;AC=1;AF=0.166667;AN=6;AO=9;CIGAR=1X;DP=89;DPB=89;DPRA=3.20833;EPP=22.5536;EPPR=176.728;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=364;QR=3196;RO=80;RPL=0;RPP=22.5536;RPPR=176.728;RPR=9;RUN=1;SAF=9;SAP=22.5536;SAR=0;SRF=80;SRP=176.728;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:48:41,7:41:1629:7:284:-11.4846,0,-132.388 0/0:12:12,0:12:486:0:0:0,-3.61236,-44.0913 0/0:29:27,2:27:1081:2:80:0,-1.13808,-89.986 dDocent_Contig_15360 1 . N G 163.404 . AB=0;ABP=0;AC=4;AF=1;AN=4;AO=5;CIGAR=1X;DP=5;DPB=5;DPRA=0;EPP=13.8677;EPPR=0;GTI=0;LEN=1;MEANALT=1;MQM=58.6;MQMR=0;NS=2;NUMALT=1;ODDS=0;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=171;QR=0;RO=0;RPL=0;RPP=13.8677;RPPR=0;RPR=5;RUN=1;SAF=0;SAP=13.8677;SAR=5;SRF=0;SRP=0;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 1/1:4:0,4:0:0:4:140:-12.9385,-1.20412,0 1/1:1:0,1:0:0:1:31:-3.09945,-0.30103,0 ./.:.:.:.:.:.:.:. dDocent_Contig_15361 28 . T G 55.6499 . AB=0.210526;ABP=16.8392;AC=2;AF=0.333333;AN=6;AO=6;CIGAR=1X;DP=55;DPB=55;DPRA=0;EPP=4.45795;EPPR=109.412;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=0.333333;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=238;QR=1972;RO=49;RPL=0;RPP=16.0391;RPPR=109.412;RPR=6;RUN=1;SAF=4;SAP=4.45795;SAR=2;SRF=49;SRP=109.412;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:36:34,2:34:1372:2:82:0,-3.0574,-115.955 0/1:12:10,2:10:396:2:81:-4.07337,0,-32.386 0/1:7:5,2:5:204:2:75:-5.01313,0,-16.6368 dDocent_Contig_15362 7 . A C 271.835 . AB=0.137931;ABP=201.138;AC=3;AF=0.5;AN=6;AO=24;CIGAR=1X;DP=174;DPB=174;DPRA=0;EPP=55.1256;EPPR=328.731;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=57.0933;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=0.92;PAO=0;PQA=0;PQR=0;PRO=0;QA=933;QR=5677;RO=150;RPL=0;RPP=55.1256;RPPR=328.731;RPR=24;RUN=1;SAF=24;SAP=55.1256;SAR=0;SRF=150;SRP=328.731;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:62:56,6:56:2120:6:234:-2.76724,0,-158.452 0/1:46:40,6:40:1517:6:231:-7.31053,0,-121.938 0/1:66:54,12:54:2040:12:468:-22.6046,0,-163.961 dDocent_Contig_15364 22 . G A 379.695 . AB=0.340909;ABP=12.6832;AC=2;AF=0.333333;AN=6;AO=15;CIGAR=1X;DP=72;DPB=72;DPRA=0.785714;EPP=35.5824;EPPR=126.784;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=3.46945e-18;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=600;QR=2278;RO=57;RPL=0;RPP=35.5824;RPPR=126.784;RPR=15;RUN=1;SAF=15;SAP=35.5824;SAR=0;SRF=57;SRP=126.784;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:28:28,0:28:1112:0:0:0,-8.42884,-100.366 0/1:9:7,2:7:278:2:80:-4.88252,0,-22.6801 0/1:35:22,13:22:888:13:520:-36.6096,0,-69.6917 dDocent_Contig_15365 9 . A C 141.679 . AB=0.428571;ABP=3.63072;AC=2;AF=0.333333;AN=6;AO=6;CIGAR=1X;DP=19;DPB=19;DPRA=1.4;EPP=16.0391;EPPR=31.2394;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=234;QR=489;RO=13;RPL=0;RPP=16.0391;RPPR=31.2394;RPR=6;RUN=1;SAF=6;SAP=16.0391;SAR=0;SRF=13;SRP=31.2394;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:9:7,2:7:257:2:78:-4.6942,0,-20.7701 0/0:5:5,0:5:195:0:0:0,-1.50515,-17.9242 0/1:5:1,4:1:37:4:156:-12.9121,0,-2.19268 dDocent_Contig_15366 12 . G A 992.412 . AB=0.454545;ABP=4.19474;AC=5;AF=0.833333;AN=6;AO=30;CIGAR=6M1X;DP=66;DPB=68.7143;DPRA=0;EPP=68.1545;EPPR=39.9253;GTI=0;LEN=1;MEANALT=2;MQM=60;MQMR=60;NS=3;NUMALT=2;ODDS=1.38778e-17;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=1202;QR=643;RO=17;RPL=0;RPP=68.1545;RPPR=39.9253;RPR=30;RUN=1;SAF=30;SAP=68.1545;SAR=0;SRF=17;SRP=39.9253;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 1|1:40:10,11,19:10:371:11,19:423,755:-63.5381,-31.8248,-58.8599,-4.38627,0,-29.0157 1|1:4:0,2,2:0:0:2,2:74,82:-13.2118,-7.17762,-6.57556,-6.42382,0,-5.82176 0|1:22:7,6,9:7:272:6,9:222,365:-28.0141,-11.9746,-32.5129,0,-4.20942,-19.6525 dDocent_Contig_15368 148 . T C 880.712 . AB=0.362637;ABP=17.9243;AC=3;AF=0.5;AN=6;AO=33;CIGAR=1X;DP=91;DPB=91;DPRA=0;EPP=74.6689;EPPR=128.956;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=1332;QR=2313;RO=58;RPL=0;RPP=74.6689;RPPR=128.956;RPR=33;RUN=1;SAF=0;SAP=74.6689;SAR=33;SRF=0;SRP=128.956;SRR=58;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:55:48,7:48:1921:7:275:-8.56078,0,-156.532 0/1:5:1,4:1:40:4:164:-13.6447,0,-2.49053 0/1:31:9,22:9:352:22:893:-71.3441,0,-22.7084 dDocent_Contig_15369 34 . C T 166.268 . AB=0.222222;ABP=27.1378;AC=1;AF=0.166667;AN=6;AO=8;CIGAR=1X;DP=56;DPB=56;DPRA=3.6;EPP=20.3821;EPPR=107.241;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=318;QR=1930;RO=48;RPL=0;RPP=20.3821;RPPR=107.241;RPR=8;RUN=1;SAF=8;SAP=20.3821;SAR=0;SRF=48;SRP=107.241;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:36:28,8:28:1115:8:318:-18.1495,0,-89.795 0/0:4:4,0:4:163:0:0:0,-1.20412,-15.0584 0/0:16:16,0:16:652:0:0:0,-4.81648,-59.0128 dDocent_Contig_15370 107 . N T 60.7974 . AB=0;ABP=0;AC=2;AF=1;AN=2;AO=2;CIGAR=2X1I2M;DP=2;DPB=2.5;DPRA=0;EPP=7.35324;EPPR=0;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=0;NS=1;NUMALT=1;ODDS=5.99146;PAIRED=1;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=64;QR=0;RO=0;RPL=0;RPP=7.35324;RPPR=0;RPR=2;RUN=1;SAF=0;SAP=7.35324;SAR=2;SRF=0;SRP=0;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 1|1:2:0,2:0:0:2:64:-6.07866,-0.60206,0 .:.:.:.:.:.:.:. .:.:.:.:.:.:.:. dDocent_Contig_15371 75 . T C 155.794 . AB=0.296296;ABP=12.7417;AC=1;AF=0.166667;AN=6;AO=8;CIGAR=1X;DP=52;DPB=52;DPRA=2.16;EPP=20.3821;EPPR=98.5551;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=280;QR=1682;RO=44;RPL=8;RPP=20.3821;RPPR=98.5551;RPR=0;RUN=1;SAF=8;SAP=20.3821;SAR=0;SRF=44;SRP=98.5551;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:21:21,0:21:819:0:0:0,-6.32163,-74.0224 0/0:4:4,0:4:146:0:0:0,-1.20412,-13.4926 0/1:27:19,8:19:717:8:280:-17.4032,0,-56.7292 dDocent_Contig_15372 45 . A T 548.695 . AB=0.0645161;ABP=54.0749;AC=0;AF=0;AN=6;AO=2;CIGAR=1M2D8M1X4M5D1M;DP=72;DPB=59.5455;DPRA=0;EPP=7.35324;EPPR=79.0118;GTI=0;LEN=1;MEANALT=4;MQM=60;MQMR=60;NS=3;NUMALT=3;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=79;QR=1376;RO=35;RPL=0;RPP=7.35324;RPPR=79.0118;RPR=2;RUN=1;SAF=2;SAP=7.35324;SAR=0;SRF=35;SRP=79.0118;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|0:36:19,12,0,5:19:754:12,0,5:433,0,193:-29.598,0,-58.4671,-35.3175,-62.0795,-97.4034,-19.4652,-46.2368,-81.558,-80.0529 0|0:5:2,1,0,2:2:79:1,0,2:38,0,80:-6.00112,-3.49328,-9.69073,-6.60318,-9.99176,-13.1048,0,-3.39933,-6.51088,-5.90882 0|0:31:14,5,2,9:14:543:5,2,9:156,79,358:-24.7931,-16.505,-59.6069,-22.5036,-54.611,-66.5221,0,-32.1285,-38.1345,-41.9281 dDocent_Contig_15374 82 . A G 489.89 . AB=0.230769;ABP=11.1951;AC=0;AF=0;AN=6;AO=3;CIGAR=1X3M1X;DP=64;DPB=64;DPRA=0.928571;EPP=9.52472;EPPR=85.5263;GTI=0;LEN=1;MEANALT=2;MQM=60;MQMR=60;NS=3;NUMALT=2;ODDS=0;PAIRED=1;PAIREDR=0.447368;PAO=0;PQA=0;PQR=0;PRO=0;QA=105;QR=1285;RO=38;RPL=3;RPP=9.52472;RPPR=85.5263;RPR=0;RUN=1;SAF=3;SAP=9.52472;SAR=0;SRF=38;SRP=85.5263;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|0:37:22,0,14:22:742:0,14:0,490:-33.356,-39.9787,-100.11,0,-60.2363,-56.0218 0|0:13:3,3,7:3:105:3,7:105,245:-19.0307,-11.3906,-19.0307,0,-5.21153e-08,-6.436 0|0:14:13,0,1:13:438:0,1:0,35:0,-3.91339,-39.395,-0.715791,-36.5463,-36.2453 dDocent_Contig_15375 13 . G T 40.5569 . AB=0.333333;ABP=4.45795;AC=1;AF=0.166667;AN=6;AO=2;CIGAR=1X;DP=37;DPB=37;DPRA=0.387097;EPP=7.35324;EPPR=79.0118;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=81;QR=1393;RO=35;RPL=0;RPP=7.35324;RPPR=79.0118;RPR=2;RUN=1;SAF=2;SAP=7.35324;SAR=0;SRF=35;SRP=79.0118;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:24:24,0:24:959:0:0:0,-7.22472,-86.6073 0/1:6:4,2:4:160:2:81:-5.87955,0,-12.9772 0/0:7:7,0:7:274:0:0:0,-2.10721,-25.0249 dDocent_Contig_15376 106 . N G 48.4563 . AB=0;ABP=0;AC=2;AF=1;AN=2;AO=2;CIGAR=2X;DP=2;DPB=2;DPRA=0;EPP=7.35324;EPPR=0;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=0;NS=1;NUMALT=1;ODDS=5.99146;PAIRED=1;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=51;QR=0;RO=0;RPL=0;RPP=7.35324;RPPR=0;RPR=2;RUN=1;SAF=0;SAP=7.35324;SAR=2;SRF=0;SRP=0;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL .:.:.:.:.:.:.:. .:.:.:.:.:.:.:. 1|1:2:0,2:0:0:2:51:-4.84454,-0.60206,0 dDocent_Contig_15379 111 . G A 30.298 . AB=0.16;ABP=28.1125;AC=2;AF=0.333333;AN=6;AO=4;CIGAR=1X;DP=45;DPB=45;DPRA=0.625;EPP=11.6962;EPPR=92.0407;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=0.97561;PAO=0;PQA=0;PQR=0;PRO=0;QA=140;QR=1430;RO=41;RPL=0;RPP=11.6962;RPPR=92.0407;RPR=4;RUN=1;SAF=0;SAP=11.6962;SAR=4;SRF=0;SRP=92.0407;SRR=41;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:20:20,0:20:698:0:0:0,-6.0206,-63.1447 0/1:6:4,2:4:139:2:70:-4.84122,0,-11.0465 0/1:19:17,2:17:593:2:70:-0.927826,0,-47.9787 dDocent_Contig_15381 107 . N A 66.4848 . AB=0;ABP=0;AC=2;AF=1;AN=2;AO=2;CIGAR=1X;DP=2;DPB=2;DPRA=0;EPP=7.35324;EPPR=0;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=0;NS=1;NUMALT=1;ODDS=5.99146;PAIRED=1;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=70;QR=0;RO=0;RPL=0;RPP=7.35324;RPPR=0;RPR=2;RUN=1;SAF=0;SAP=7.35324;SAR=2;SRF=0;SRP=0;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL ./.:.:.:.:.:.:.:. ./.:.:.:.:.:.:.:. 1/1:2:0,2:0:0:2:70:-6.6474,-0.60206,0 dDocent_Contig_15382 16 . A G 187.647 . AB=0.258065;ABP=18.771;AC=1;AF=0.166667;AN=6;AO=8;CIGAR=1X;DP=49;DPB=49;DPRA=3.44444;EPP=20.3821;EPPR=92.0407;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=325;QR=1619;RO=41;RPL=0;RPP=20.3821;RPPR=92.0407;RPR=8;RUN=1;SAF=8;SAP=20.3821;SAR=0;SRF=41;SRP=92.0407;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:31:23,8:23:893:8:325:-20.2875,0,-71.3393 0/0:5:5,0:5:200:0:0:0,-1.50515,-18.3799 0/0:13:13,0:13:526:0:0:0,-3.91339,-47.6864 dDocent_Contig_15383 16 . G A 2397.98 . AB=0.791667;ABP=73.9451;AC=3;AF=0.5;AN=6;AO=76;CIGAR=1X;DP=96;DPB=96;DPRA=0;EPP=168.042;EPPR=46.4397;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=3037;QR=792;RO=20;RPL=0;RPP=168.042;RPPR=46.4397;RPR=76;RUN=1;SAF=76;SAP=168.042;SAR=0;SRF=20;SRP=46.4397;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:40:8,32:8:311:32:1273:-102.799,0,-16.3096 0/1:36:8,28:8:320:28:1118:-90.0686,0,-18.3306 0/1:20:4,16:4:161:16:646:-52.4534,0,-8.85467 dDocent_Contig_15384 15 . T G 1011.22 . AB=0.576271;ABP=5.99147;AC=3;AF=0.5;AN=6;AO=34;CIGAR=1X;DP=59;DPB=59;DPRA=0;EPP=76.8404;EPPR=57.2971;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=1370;QR=975;RO=25;RPL=0;RPP=76.8404;RPPR=57.2971;RPR=34;RUN=1;SAF=34;SAP=76.8404;SAR=0;SRF=25;SRP=57.2971;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:40:16,24:16:607:24:962:-74.8396,0,-42.9073 0/1:5:1,4:1:41:4:164:-13.6447,0,-2.58942 0/1:14:8,6:8:327:6:244:-18.1244,0,-25.5857 dDocent_Contig_15385 11 . T C 1923.29 . AB=0.551724;ABP=5.70592;AC=3;AF=0.5;AN=6;AO=64;CIGAR=1X;DP=116;DPB=116;DPRA=0;EPP=141.985;EPPR=115.927;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=0.984375;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=2576;QR=2084;RO=52;RPL=0;RPP=141.985;RPPR=115.927;RPR=64;RUN=1;SAF=64;SAP=141.985;SAR=0;SRF=52;SRP=115.927;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:53:34,19:34:1367:19:775:-54.1133,0,-107.329 0/1:11:6,5:6:233:5:202:-15.2507,0,-18.025 0/1:52:12,40:12:484:40:1599:-128.488,0,-28.2547 dDocent_Contig_15386 15 . C T 333.51 . AB=0.325581;ABP=14.3727;AC=3;AF=0.5;AN=6;AO=14;CIGAR=1X;DP=43;DPB=43;DPRA=0;EPP=25.3454;EPPR=65.983;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=0.857143;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=563;QR=1174;RO=29;RPL=0;RPP=33.4109;RPPR=65.983;RPR=14;RUN=1;SAF=13;SAP=25.3454;SAR=1;SRF=29;SRP=65.983;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:29:20,9:20:807:9:361:-24.1224,0,-64.2154 0/1:9:7,2:7:285:2:81:-4.97646,0,-23.3151 0/1:5:2,3:2:82:3:121:-9.77484,0,-6.27453 dDocent_Contig_15388 28 . G A 1450.64 . AB=0.409449;ABP=12.0553;AC=3;AF=0.5;AN=6;AO=52;CIGAR=1X;DP=127;DPB=127;DPRA=0;EPP=115.927;EPPR=165.871;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=2087;QR=2997;RO=75;RPL=0;RPP=115.927;RPPR=165.871;RPR=52;RUN=1;SAF=52;SAP=115.927;SAR=0;SRF=75;SRP=165.871;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:68:39,29:39:1555:29:1152:-83.4906,0,-119.712 0/1:10:7,3:7:286:3:122:-8.36219,0,-23.1045 0/1:49:29,20:29:1156:20:813:-58.7337,0,-89.563 dDocent_Contig_15389 7 . A G 252.657 . AB=0.26087;ABP=37.2818;AC=2;AF=0.333333;AN=6;AO=25;CIGAR=1X;DP=145;DPB=145;DPRA=0;EPP=57.2971;EPPR=263.587;GTI=0;LEN=1;MEANALT=1;MQM=50.52;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=757;QR=4557;RO=120;RPL=0;RPP=57.2971;RPPR=263.587;RPR=25;RUN=1;SAF=25;SAP=57.2971;SAR=0;SRF=120;SRP=263.587;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:76:69,7:69:2631:7:212:0,-7.42173,-221.527 0/1:15:11,4:11:395:4:112:-5.83242,0,-31.3714 0/1:54:40,14:40:1531:14:433:-22.9561,0,-121.808 dDocent_Contig_15390 8 . A G 348.522 . AB=0.133333;ABP=38.0434;AC=1;AF=0.166667;AN=6;AO=4;CIGAR=2X;DP=30;DPB=30;DPRA=0;EPP=11.6962;EPPR=33.4109;GTI=0;LEN=1;MEANALT=2;MQM=60;MQMR=60;NS=3;NUMALT=2;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=147;QR=539;RO=14;RPL=0;RPP=11.6962;RPPR=33.4109;RPR=4;RUN=1;SAF=4;SAP=11.6962;SAR=0;SRF=14;SRP=33.4109;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|0:14:9,1,4:9:345:1,4:38,154:-9.93935,-9.5331,-37.5466,0,-25.2024,-27.1145 1|0:4:0,2,2:0:0:2,2:75,76:-12.7537,-6.61261,-6.01055,-6.51828,0,-5.91622 0|0:12:5,1,6:5:194:1,6:34,233:-17.682,-16.436,-32.0749,0,-13.2298,-14.1737 dDocent_Contig_15391 14 . A G 106.517 . AB=0.111111;ABP=215.815;AC=3;AF=0.5;AN=6;AO=18;CIGAR=1X;DP=162;DPB=162;DPRA=0;EPP=42.0968;EPPR=315.702;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=709;QR=5789;RO=144;RPL=0;RPP=42.0968;RPPR=315.702;RPR=18;RUN=1;SAF=18;SAP=42.0968;SAR=0;SRF=144;SRP=315.702;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:80:72,8:72:2885:8:303:-3.53887,0,-235.666 0/1:19:15,4:15:600:4:164:-9.43033,0,-48.6181 0/1:63:57,6:57:2304:6:242:-3.19206,0,-188.545 dDocent_Contig_15392 22 . A C 202.074 . AB=0.4;ABP=4.74748;AC=2;AF=0.333333;AN=6;AO=9;CIGAR=1X;DP=35;DPB=35;DPRA=0;EPP=22.5536;EPPR=59.4686;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=362;QR=1045;RO=26;RPL=0;RPP=22.5536;RPPR=59.4686;RPR=9;RUN=1;SAF=9;SAP=22.5536;SAR=0;SRF=26;SRP=59.4686;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:15:14,1:14:562:1:40:0,-0.519771,-46.9281 0/1:6:2,4:2:81:4:160:-12.9772,0,-5.87955 0/1:14:10,4:10:402:4:162:-10.7525,0,-32.3255 dDocent_Contig_15394 202 . A G 700.301 . AB=0.415385;ABP=7.05258;AC=4;AF=0.666667;AN=6;AO=28;CIGAR=1X;DP=66;DPB=66;DPRA=0;EPP=63.8115;EPPR=85.5263;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=1023;QR=1397;RO=38;RPL=28;RPP=63.8115;RPPR=85.5263;RPR=0;RUN=1;SAF=0;SAP=63.8115;SAR=28;SRF=0;SRP=85.5263;SRR=38;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:38:19,19:19:698:19:693:-51.2606,0,-51.7127 1/1:1:0,1:0:0:1:37:-3.69783,-0.30103,0 0/1:27:19,8:19:699:8:293:-18.5937,0,-55.1142 dDocent_Contig_15395 10 . T C 103.567 . AB=0.3125;ABP=7.89611;AC=2;AF=0.333333;AN=6;AO=5;CIGAR=1X;DP=27;DPB=27;DPRA=0.727273;EPP=13.8677;EPPR=50.7827;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=199;QR=888;RO=22;RPL=0;RPP=13.8677;RPPR=50.7827;RPR=5;RUN=1;SAF=5;SAP=13.8677;SAR=0;SRF=22;SRP=50.7827;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:11:11,0:11:445:0:0:0,-3.31133,-40.4057 0/1:3:1,2:1:41:2:80:-6.6887,0,-3.19148 0/1:13:10,3:10:402:3:119:-7.18162,0,-32.6263 dDocent_Contig_15396 74 . T A 924.372 . AB=0.450704;ABP=4.50892;AC=4;AF=0.666667;AN=6;AO=34;CIGAR=1X;DP=73;DPB=73;DPRA=0;EPP=76.8404;EPPR=87.6977;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=1292;QR=1473;RO=39;RPL=34;RPP=76.8404;RPPR=87.6977;RPR=0;RUN=1;SAF=34;SAP=76.8404;SAR=0;SRF=39;SRP=87.6977;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:45:30,15:30:1128:15:565:-37.6378,0,-88.2657 1/1:2:0,2:0:0:2:78:-7.4033,-0.60206,0 0/1:26:9,17:9:345:17:649:-50.9186,0,-23.5815 dDocent_Contig_15397 76 . C T 53.8091 . AB=0.25;ABP=11.6962;AC=1;AF=0.166667;AN=6;AO=5;CIGAR=1X;DP=56;DPB=56;DPRA=0.973684;EPP=13.8677;EPPR=105.24;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=1.73472e-18;PAIRED=1;PAIREDR=0.980392;PAO=0;PQA=0;PQR=0;PRO=0;QA=166;QR=1800;RO=51;RPL=5;RPP=13.8677;RPPR=113.755;RPR=0;RUN=1;SAF=5;SAP=13.8677;SAR=0;SRF=50;SRP=105.24;SRR=1;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:21:20,1:20:718:1:36:0,-2.72335,-61.3487 0/0:19:19,0:19:672:0:0:0,-5.71957,-60.806 0/1:16:12,4:12:410:4:130:-7.20482,0,-32.4116 dDocent_Contig_15399 19 . A G 370.632 . AB=0.32;ABP=17.0814;AC=3;AF=0.5;AN=6;AO=16;CIGAR=1X;DP=50;DPB=50;DPRA=0;EPP=37.7539;EPPR=76.8404;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=628;QR=1350;RO=34;RPL=0;RPP=37.7539;RPPR=76.8404;RPR=16;RUN=1;SAF=16;SAP=37.7539;SAR=0;SRF=34;SRP=76.8404;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:6:3,3:3:119:3:116:-9.00933,0,-9.28883 0/1:16:8,8:8:324:8:308:-23.2616,0,-24.7129 0/1:28:23,5:23:907:5:204:-10.3152,0,-73.5059 dDocent_Contig_15401 16 . G A 77.7606 . AB=0.25;ABP=11.6962;AC=1;AF=0.166667;AN=6;AO=4;CIGAR=1X;DP=51;DPB=51;DPRA=0.914286;EPP=11.6962;EPPR=105.07;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=156;QR=1832;RO=47;RPL=0;RPP=11.6962;RPPR=105.07;RPR=4;RUN=1;SAF=4;SAP=11.6962;SAR=0;SRF=47;SRP=105.07;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:23:23,0:23:894:0:0:0,-6.92369,-80.7552 0/0:12:12,0:12:471:0:0:0,-3.61236,-42.7405 0/1:16:12,4:12:467:4:156:-9.59996,0,-37.5588 dDocent_Contig_15402 63 . A G 417.232 . AB=0.517241;ABP=3.08518;AC=1;AF=0.25;AN=4;AO=16;CIGAR=1X;DP=46;DPB=46;DPRA=0;EPP=37.7539;EPPR=68.1545;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=2;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=620;QR=1174;RO=30;RPL=16;RPP=37.7539;RPPR=68.1545;RPR=0;RUN=1;SAF=16;SAP=37.7539;SAR=0;SRF=30;SRP=68.1545;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:17:16,1:16:640:1:41:0,-1.02294,-53.8403 ./.:.:.:.:.:.:.:. 0/1:29:14,15:14:534:15:579:-43.723,0,-39.6736 dDocent_Contig_15404 29 . G A 1465.86 . AB=0.604938;ABP=10.7579;AC=3;AF=0.5;AN=6;AO=49;CIGAR=1X;DP=81;DPB=81;DPRA=0;EPP=109.412;EPPR=72.4974;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=0.591837;PAIREDR=0.96875;PAO=0;PQA=0;PQR=0;PRO=0;QA=1950;QR=1277;RO=32;RPL=0;RPP=109.412;RPPR=72.4974;RPR=49;RUN=1;SAF=49;SAP=109.412;SAR=0;SRF=32;SRP=72.4974;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:57:23,34:23:915:34:1354:-104.958,0,-65.4969 0/1:14:7,7:7:283:7:276:-20.9945,0,-21.6286 0/1:10:2,8:2:79:8:320:-26.155,0,-4.48694 dDocent_Contig_15405 7 . A G 101.022 . AB=0.136364;ABP=154.619;AC=2;AF=0.333333;AN=6;AO=18;CIGAR=1X;DP=142;DPB=142;DPRA=6.6;EPP=42.0968;EPPR=272.273;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=586;QR=4745;RO=124;RPL=0;RPP=42.0968;RPPR=272.273;RPR=18;RUN=1;SAF=18;SAP=42.0968;SAR=0;SRF=124;SRP=272.273;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:97:85,12:85:3260:12:398:-6.9367,0,-264.348 0/0:10:10,0:10:379:0:0:0,-3.0103,-34.4637 0/1:35:29,6:29:1106:6:188:-6.68838,0,-89.3066 dDocent_Contig_15406 42 . A G 303.156 . AB=0.333333;ABP=11.6962;AC=2;AF=0.333333;AN=6;AO=12;CIGAR=1X;DP=45;DPB=45;DPRA=2;EPP=29.068;EPPR=74.6689;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=488;QR=1279;RO=33;RPL=0;RPP=29.068;RPPR=74.6689;RPR=12;RUN=1;SAF=12;SAP=29.068;SAR=0;SRF=33;SRP=74.6689;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:17:9,8:9:350:8:327:-24.6826,0,-26.7388 0/0:9:9,0:9:349:0:0:0,-2.70927,-31.7694 0/1:19:15,4:15:580:4:161:-9.15591,0,-46.8171 dDocent_Contig_15407 27 . G A 369.71 . AB=0.0882353;ABP=53.0819;AC=0;AF=0;AN=6;AO=3;CIGAR=2M5I3M1X;DP=36;DPB=52.6667;DPRA=8.5;EPP=9.52472;EPPR=37.7539;GTI=0;LEN=1;MEANALT=3;MQM=12;MQMR=60;NS=3;NUMALT=3;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=117;QR=623;RO=16;RPL=0;RPP=9.52472;RPPR=37.7539;RPR=3;RUN=1;SAF=3;SAP=9.52472;SAR=0;SRF=16;SRP=37.7539;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|0:17:8,2,2,5:8:308:2,2,5:77,74,193:-13.5202,-14.4303,-39.1159,-9.86205,-33.6669,-34.5857,0,-23.8664,-19.3195,-23.8738 0|0:17:8,1,0,7:8:315:1,0,7:40,0,275:-20.3271,-21.9868,-47.6022,-22.7353,-47.9032,-48.6657,0,-25.2853,-26.0367,-23.9295 0|0:2:0,0,0,2:0:0:0,0,2:0,0,70:-6.64548,-6.64548,-6.64548,-6.64548,-6.64548,-6.64548,-0.60206,-0.60206,-0.60206,0 dDocent_Contig_15408 9 . A C 300.941 . AB=0.107143;ABP=40.5458;AC=0;AF=0;AN=6;AO=3;CIGAR=1X2M2X;DP=48;DPB=48;DPRA=2.33333;EPP=9.52472;EPPR=74.6689;GTI=0;LEN=1;MEANALT=2;MQM=60;MQMR=60;NS=3;NUMALT=2;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=117;QR=1230;RO=33;RPL=0;RPP=9.52472;RPPR=74.6689;RPR=3;RUN=1;SAF=3;SAP=9.52472;SAR=0;SRF=33;SRP=74.6689;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|0:28:15,3,10:15:542:3,10:117,402:-28.6217,-23.5228,-66.8275,0,-34.5864,-41.198 0|0:8:6,0,2:6:226:0,2:0,78:-4.99506,-6.80124,-25.311,0,-18.8961,-18.2941 0|0:12:12,0,0:12:462:0,0:0,0:0,-3.61236,-41.9301,-3.61236,-41.9301,-41.9301 dDocent_Contig_15409 25 . T A 623.352 . AB=0.382353;ABP=11.1853;AC=3;AF=0.5;AN=6;AO=26;CIGAR=1X;DP=68;DPB=68;DPRA=0;EPP=59.4686;EPPR=94.2121;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=971;QR=1641;RO=42;RPL=0;RPP=59.4686;RPPR=94.2121;RPR=26;RUN=1;SAF=26;SAP=59.4686;SAR=0;SRF=42;SRP=94.2121;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:32:19,13:19:755:13:506:-36.2472,0,-58.6411 0/1:3:1,2:1:40:2:49:-3.74864,0,-3.09259 0/1:33:22,11:22:846:11:416:-27.8481,0,-66.5148 dDocent_Contig_15410 25 . C A 49.4867 . AB=0.148148;ABP=32.0437;AC=1;AF=0.166667;AN=6;AO=4;CIGAR=1X;DP=52;DPB=52;DPRA=2.16;EPP=11.6962;EPPR=107.241;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=158;QR=1862;RO=48;RPL=0;RPP=11.6962;RPPR=107.241;RPR=4;RUN=1;SAF=4;SAP=11.6962;SAR=0;SRF=48;SRP=107.241;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:27:23,4:23:926:4:158:-6.47155,0,-75.5162 0/0:15:15,0:15:555:0:0:0,-4.51545,-50.2742 0/0:10:10,0:10:381:0:0:0,-3.0103,-34.6374 dDocent_Contig_15411 73 . G C 152.257 . AB=0.166667;ABP=14.5915;AC=3;AF=0.5;AN=6;AO=2;CIGAR=14M1X;DP=39;DPB=36.2;DPRA=0;EPP=7.35324;EPPR=61.6401;GTI=0;LEN=1;MEANALT=3;MQM=60;MQMR=60;NS=3;NUMALT=3;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=75;QR=1039;RO=27;RPL=2;RPP=7.35324;RPPR=61.6401;RPR=0;RUN=1;SAF=2;SAP=7.35324;SAR=0;SRF=27;SRP=61.6401;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|1:21:16,0,5,0:16:620:0,5,0:0,186,0:-10.7747,-15.5912,-66.5364,0,-51.3206,-49.8154,-15.5912,-66.5364,-51.3206,-66.5364 0|1:6:4,0,2,0:4:157:0,2,0:0,78,0:-5.59712,-6.80124,-19.7156,0,-13.3048,-12.7028,-6.80124,-19.7156,-13.3048,-19.7156 0|1:12:7,2,1,2:7:262:2,1,2:78,41,75:-4.30572,0,-20.8431,-3.02339,-18.0576,-24.171,-0.278235,-15.3026,-18.3292,-21.1144 dDocent_Contig_15412 57 . C T 325.115 . AB=0.354839;ABP=8.68415;AC=3;AF=0.5;AN=6;AO=11;CIGAR=2X3M1X;DP=39;DPB=39;DPRA=0;EPP=26.8965;EPPR=48.6112;GTI=0;LEN=1;MEANALT=1.5;MQM=60;MQMR=60;NS=3;NUMALT=2;ODDS=3.46945e-18;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=368;QR=754;RO=21;RPL=11;RPP=26.8965;RPPR=48.6112;RPR=0;RUN=1;SAF=11;SAP=26.8965;SAR=0;SRF=21;SRP=48.6112;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|1:20:13,0,7:13:469:0,7:0,235:-15.4574,-19.3707,-57.6622,0,-38.6358,-36.5286 0|1:8:3,5,0:3:109:5,0:171,0:-13.3181,0,-7.75985,-14.2212,-9.265,-23.131 0|1:11:5,2,4:5:176:2,4:66,133:-9.25899,-5.42876,-19.1659,0,-9.0141,-13.1399 dDocent_Contig_15414 14 . T C 6065.93 . AB=0.885714;ABP=93.4676;AC=5;AF=0.833333;AN=6;AO=186;CIGAR=1X;DP=202;DPB=202;DPRA=0;EPP=406.904;EPPR=37.7539;GTI=0;LEN=1;MEANALT=1;MQM=59.0806;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=0.978495;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=7400;QR=611;RO=16;RPL=0;RPP=406.904;RPPR=37.7539;RPR=186;RUN=1;SAF=186;SAP=406.904;SAR=0;SRF=16;SRP=37.7539;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 1/1:115:7,108:7:277:108:4297:-357.781,-9.31871,0 1/1:17:1,16:1:40:16:625:-50.3223,-1.12183,0 0/1:70:8,62:8:294:62:2478:-200.013,0,-5.73352 dDocent_Contig_15415 18 . G A 200.168 . AB=0.212766;ABP=36.6912;AC=2;AF=0.333333;AN=6;AO=10;CIGAR=1X;DP=55;DPB=55;DPRA=2.9375;EPP=24.725;EPPR=100.727;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=0.9;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=395;QR=1740;RO=45;RPL=0;RPP=24.725;RPPR=100.727;RPR=10;RUN=1;SAF=10;SAP=24.725;SAR=0;SRF=45;SRP=100.727;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:37:28,9:28:1091:9:359:-21.5341,0,-87.3335 0/1:10:9,1:9:338:1:36:-0.587975,0,-27.7554 0/0:8:8,0:8:311:0:0:0,-2.40824,-28.3484 dDocent_Contig_15417 28 . T A 82.0069 . AB=0.146341;ABP=47.552;AC=1;AF=0.166667;AN=6;AO=6;CIGAR=1X;DP=69;DPB=69;DPRA=2.92857;EPP=16.0391;EPPR=139.813;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=241;QR=2216;RO=63;RPL=0;RPP=16.0391;RPPR=139.813;RPR=6;RUN=1;SAF=6;SAP=16.0391;SAR=0;SRF=63;SRP=139.813;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:41:35,6:35:1236:6:241:-9.72357,0,-99.1772 0/0:10:10,0:10:355:0:0:0,-3.0103,-32.2889 0/0:18:18,0:18:625:0:0:0,-5.41854,-56.5626 dDocent_Contig_15418 59 . G T 87.321 . AB=0.181818;ABP=32.0291;AC=2;AF=0.333333;AN=6;AO=6;CIGAR=1X;DP=45;DPB=45;DPRA=1.375;EPP=16.0391;EPPR=87.6977;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=238;QR=1511;RO=39;RPL=6;RPP=16.0391;RPPR=87.6977;RPR=0;RUN=1;SAF=6;SAP=16.0391;SAR=0;SRF=39;SRP=87.6977;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:19:16,3:16:621:3:118:-5.28201,0,-50.4984 0/1:14:11,3:11:426:3:120:-6.97289,0,-34.474 0/0:12:12,0:12:464:0:0:0,-3.61236,-42.1114 dDocent_Contig_15419 115 . G A 672.951 . AB=0.491525;ABP=3.0471;AC=2;AF=0.5;AN=4;AO=29;CIGAR=1X;DP=59;DPB=59;DPRA=0;EPP=65.983;EPPR=68.1545;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=2;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=979;QR=1015;RO=30;RPL=0;RPP=65.983;RPPR=68.1545;RPR=29;RUN=1;SAF=0;SAP=65.983;SAR=29;SRF=0;SRP=68.1545;SRR=30;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:28:8,20:8:270:20:675:-52.6377,0,-16.1998 ./.:.:.:.:.:.:.:. 0/1:31:22,9:22:745:9:304:-18.3564,0,-58.0326 dDocent_Contig_15420 53 . T C 141.453 . AB=0.259259;ABP=16.6021;AC=3;AF=0.5;AN=6;AO=7;CIGAR=1X;DP=27;DPB=27;DPRA=0;EPP=18.2106;EPPR=46.4397;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=1.73472e-18;PAIRED=1;PAIREDR=0.95;PAO=0;PQA=0;PQR=0;PRO=0;QA=278;QR=779;RO=20;RPL=7;RPP=18.2106;RPPR=46.4397;RPR=0;RUN=1;SAF=7;SAP=18.2106;SAR=0;SRF=20;SRP=46.4397;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:13:9,4:9:361:4:164:-11.2365,0,-28.9405 0/1:3:1,2:1:37:2:77:-6.40574,0,-2.79474 0/1:11:10,1:10:381:1:37:-0.386499,0,-31.326 dDocent_Contig_15421 43 . C T 227.704 . AB=0.5625;ABP=3.55317;AC=1;AF=0.166667;AN=6;AO=10;CIGAR=1X;DP=33;DPB=33;DPRA=7.75;EPP=24.725;EPPR=52.9542;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=1.73472e-18;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=361;QR=887;RO=23;RPL=0;RPP=24.725;RPPR=52.9542;RPR=10;RUN=1;SAF=10;SAP=24.725;SAR=0;SRF=23;SRP=52.9542;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:15:14,1:14:525:1:38:0,-0.718181,-43.7758 0/0:2:2,0:2:78:0:0:0,-0.60206,-7.40278 0/1:16:7,9:7:284:9:323:-24.5937,0,-21.1175 dDocent_Contig_15422 18 . T G 1825.08 . AB=0.709302;ABP=35.7339;AC=3;AF=0.5;AN=6;AO=61;CIGAR=1X;DP=86;DPB=86;DPRA=0;EPP=135.47;EPPR=57.2971;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=2366;QR=1017;RO=25;RPL=0;RPP=135.47;RPPR=57.2971;RPR=61;RUN=1;SAF=61;SAP=135.47;SAR=0;SRF=25;SRP=57.2971;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:53:16,37:16:653:37:1418:-111.916,0,-43.1478 0/1:16:7,9:7:282:9:360:-27.946,0,-20.9361 0/1:17:2,15:2:82:15:588:-48.1392,0,-2.66217 dDocent_Contig_15423 209 . N G 200.802 . AB=0;ABP=0;AC=6;AF=1;AN=6;AO=6;CIGAR=1X;DP=6;DPB=6;DPRA=0;EPP=16.0391;EPPR=0;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=0;NS=3;NUMALT=1;ODDS=1.69407e-21;PAIRED=1;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=205;QR=0;RO=0;RPL=6;RPP=16.0391;RPPR=0;RPR=0;RUN=1;SAF=0;SAP=16.0391;SAR=6;SRF=0;SRP=0;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 1/1:1:0,1:0:0:1:34:-3.39891,-0.30103,0 1/1:3:0,3:0:0:3:93:-8.67475,-0.90309,0 1/1:2:0,2:0:0:2:78:-7.40347,-0.60206,0 dDocent_Contig_15424 96 . T G 72.9627 . AB=0;ABP=0;AC=2;AF=0.333333;AN=6;AO=3;CIGAR=1X;DP=28;DPB=28;DPRA=0.9;EPP=3.73412;EPPR=3.79203;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=0.666667;PAIREDR=0.8;PAO=0;PQA=0;PQR=0;PRO=0;QA=115;QR=909;RO=25;RPL=3;RPP=9.52472;RPPR=57.2971;RPR=0;RUN=1;SAF=1;SAP=3.73412;SAR=2;SRF=14;SRP=3.79203;SRR=11;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:16:15,1:15:540:1:40:0,-0.820801,-44.9302 1/1:2:0,2:0:0:2:75:-7.11959,-0.60206,0 0/0:10:10,0:10:369:0:0:0,-3.0103,-33.5542 dDocent_Contig_15425 11 . C A 38.7388 . AB=0.153846;ABP=30.0702;AC=2;AF=0.333333;AN=6;AO=4;CIGAR=1X2M1X;DP=27;DPB=27;DPRA=13;EPP=11.6962;EPPR=52.9542;GTI=0;LEN=1;MEANALT=1;MQM=53;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=0;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=161;QR=924;RO=23;RPL=0;RPP=11.6962;RPPR=52.9542;RPR=4;RUN=1;SAF=4;SAP=11.6962;SAR=0;SRF=23;SRP=52.9542;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|1:15:13,2:13:524:2:80:-3.0442,0,-42.9924 0|0:1:1,0:1:39:0:0:0,-0.30103,-3.89656 0|1:11:9,2:9:361:2:81:-4.33825,0,-29.5429 dDocent_Contig_15426 98 . N A 90.5152 . AB=0;ABP=0;AC=2;AF=1;AN=2;AO=3;CIGAR=1X;DP=3;DPB=3;DPRA=0;EPP=9.52472;EPPR=0;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=0;NS=1;NUMALT=1;ODDS=6.68461;PAIRED=0.666667;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=97;QR=0;RO=0;RPL=3;RPP=9.52472;RPPR=0;RPR=0;RUN=1;SAF=3;SAP=9.52472;SAR=0;SRF=0;SRP=0;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 1/1:3:0,3:0:0:3:97:-9.05098,-0.90309,0 ./.:.:.:.:.:.:.:. ./.:.:.:.:.:.:.:. dDocent_Contig_15428 19 . T C 209.033 . AB=0.147287;ABP=142.405;AC=2;AF=0.333333;AN=6;AO=19;CIGAR=1X;DP=144;DPB=144;DPRA=4.3;EPP=44.2683;EPPR=274.444;GTI=0;LEN=1;MEANALT=1;MQM=54.1053;MQMR=59.976;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=0.976;PAO=0;PQA=0;PQR=0;PRO=0;QA=729;QR=4657;RO=125;RPL=0;RPP=44.2683;RPPR=274.444;RPR=19;RUN=1;SAF=19;SAP=44.2683;SAR=0;SRF=125;SRP=274.444;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:94:81,13:81:3050:13:491:-13.1712,0,-246.367 0/0:15:15,0:15:558:0:0:0,-4.51545,-50.5559 0/1:35:29,6:29:1049:6:238:-11.2549,0,-84.1766 dDocent_Contig_15431 27 . A T 321.98 . AB=0.317073;ABP=14.9269;AC=1;AF=0.166667;AN=6;AO=13;CIGAR=1X;DP=57;DPB=57;DPRA=5.125;EPP=31.2394;EPPR=98.5551;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=508;QR=1756;RO=44;RPL=0;RPP=31.2394;RPPR=98.5551;RPR=13;RUN=1;SAF=13;SAP=31.2394;SAR=0;SRF=44;SRP=98.5551;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:41:28,13:28:1117:13:508:-33.7209,0,-88.4758 0/0:7:7,0:7:285:0:0:0,-2.10721,-26.0244 0/0:9:9,0:9:354:0:0:0,-2.70927,-32.2165 dDocent_Contig_15432 7 . A G 1609.77 . AB=0.492754;ABP=3.07324;AC=3;AF=0.5;AN=6;AO=68;CIGAR=1X;DP=138;DPB=138;DPRA=0;EPP=150.67;EPPR=144.282;GTI=0;LEN=1;MEANALT=1.33333;MQM=59.6176;MQMR=57.8261;NS=3;NUMALT=1;ODDS=0;PAIRED=0;PAIREDR=0.289855;PAO=0;PQA=0;PQR=0;PRO=0;QA=2301;QR=2620;RO=69;RPL=0;RPP=150.67;RPPR=152.842;RPR=68;RUN=1;SAF=68;SAP=150.67;SAR=0;SRF=68;SRP=144.282;SRR=1;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:22:13,8:13:493:8:194:-11.25,0,-38.2655 0/1:92:41,51:41:1559:51:1819:-136.245,0,-112.608 0/1:24:15,9:15:568:9:288:-19.0058,0,-42.098 dDocent_Contig_15433 53 . A C 1355.38 . AB=0.540541;ABP=4.06669;AC=3;AF=0.5;AN=6;AO=40;CIGAR=3M2X1M;DP=74;DPB=71;DPRA=0;EPP=89.8692;EPPR=37.7539;GTI=0;LEN=1;MEANALT=2.33333;MQM=60;MQMR=60;NS=3;NUMALT=3;ODDS=0;PAIRED=0.975;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=1556;QR=618;RO=16;RPL=40;RPP=89.8692;RPPR=37.7539;RPR=0;RUN=1;SAF=40;SAP=89.8692;SAR=0;SRF=16;SRP=37.7539;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|1:26:0,0,6,20:0:0:0,6,20:0,216,772:-81.3803,-81.3803,-81.3803,-63.7731,-63.7731,-61.9669,-17.9728,-17.9728,0,-11.9522 0|1:21:7,4,1,9:7:270:4,1,9:156,39,351:-26.7434,-16.028,-36.993,-25.6448,-34.9911,-47.5132,0,-9.34448,-18.9623,-19.4591 0|1:27:9,0,7,11:9:348:0,7,11:0,244,433:-32.9372,-35.6465,-64.233,-15.8279,-44.4079,-42.3007,0,-28.6044,-8.7851,-25.2931 dDocent_Contig_15436 14 . T C 75.3367 . AB=0.428571;ABP=3.32051;AC=1;AF=0.166667;AN=6;AO=4;CIGAR=1X;DP=141;DPB=141;DPRA=1.93103;EPP=11.6962;EPPR=291.88;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=0.985401;PAO=0;PQA=0;PQR=0;PRO=0;QA=163;QR=5044;RO=137;RPL=0;RPP=11.6962;RPPR=300.502;RPR=4;RUN=1;SAF=4;SAP=11.6962;SAR=0;SRF=136;SRP=291.88;SRR=1;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:105:104,1:104:3849:1:40:0,-27.6125,-342.551 0/1:7:4,3:4:148:3:123:-9.35758,0,-11.573 0/0:29:29,0:29:1047:0:0:0,-8.72987,-94.5368 dDocent_Contig_15437 135 . T C 122.905 . AB=0;ABP=0;AC=2;AF=0.333333;AN=6;AO=5;CIGAR=1X;DP=25;DPB=25;DPRA=1.0625;EPP=13.8677;EPPR=46.4397;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=0.6;PAIREDR=0.85;PAO=0;PQA=0;PQR=0;PRO=0;QA=163;QR=719;RO=20;RPL=0;RPP=13.8677;RPPR=46.4397;RPR=5;RUN=1;SAF=0;SAP=13.8677;SAR=5;SRF=0;SRP=46.4397;SRR=20;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:13:12,1:12:432:1:32:0,-0.714077,-36.0205 1/1:4:0,4:0:0:4:131:-12.114,-1.20412,0 0/0:8:8,0:8:287:0:0:0,-2.40824,-26.1759 dDocent_Contig_15438 18 . C T 34.3585 . AB=0.15;ABP=24.2907;AC=1;AF=0.166667;AN=6;AO=7;CIGAR=1X;DP=133;DPB=133;DPRA=1.71667;EPP=18.2106;EPPR=204.027;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=0.857143;PAO=0;PQA=0;PQR=0;PRO=0;QA=284;QR=4975;RO=126;RPL=0;RPP=18.2106;RPPR=276.616;RPR=7;RUN=1;SAF=7;SAP=18.2106;SAR=0;SRF=117;SRP=204.027;SRR=9;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:83:79,4:79:3150:4:163:0,-9.92706,-268.516 0/0:30:30,0:30:1155:0:0:0,-9.0309,-104.229 0/1:20:17,3:17:670:3:121:-5.2596,0,-54.6074 dDocent_Contig_15440 46 . C A 865.713 . 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T A 624.668 . AB=0.313253;ABP=28.1523;AC=3;AF=0.5;AN=6;AO=26;CIGAR=1X;DP=83;DPB=83;DPRA=0;EPP=59.4686;EPPR=126.784;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=6.93889e-18;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=1021;QR=2268;RO=57;RPL=0;RPP=59.4686;RPPR=126.784;RPR=26;RUN=1;SAF=26;SAP=59.4686;SAR=0;SRF=57;SRP=126.784;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:51:31,20:31:1241:20:785:-55.6179,0,-96.6084 0/1:9:6,3:6:228:3:114:-7.92254,0,-18.1725 0/1:23:20,3:20:799:3:122:-4.4488,0,-65.303 dDocent_Contig_15444 17 . C T 135.029 . AB=0.195122;ABP=36.112;AC=3;AF=0.5;AN=6;AO=8;CIGAR=1X;DP=41;DPB=41;DPRA=0;EPP=20.3821;EPPR=74.6689;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=321;QR=1299;RO=33;RPL=0;RPP=20.3821;RPPR=74.6689;RPR=8;RUN=1;SAF=8;SAP=20.3821;SAR=0;SRF=33;SRP=74.6689;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:22:20,2:20:785:2:81:-1.06307,0,-64.3429 0/1:10:5,5:5:188:5:199:-15.2778,0,-14.2684 0/1:9:8,1:8:326:1:41:-1.3853,0,-27.0006 dDocent_Contig_15445 18 . T C 37.7348 . AB=0.333333;ABP=4.45795;AC=1;AF=0.166667;AN=6;AO=2;CIGAR=1X3M1X;DP=34;DPB=34;DPRA=0.428571;EPP=7.35324;EPPR=70.3259;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=78;QR=1233;RO=31;RPL=0;RPP=7.35324;RPPR=70.3259;RPR=2;RUN=1;SAF=2;SAP=7.35324;SAR=0;SRF=31;SRP=70.3259;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|0:21:21,0:21:834:0:0:0,-6.32163,-75.3764 0|1:6:4,2:4:161:2:78:-5.59729,0,-13.0693 0|0:7:6,0:6:238:0:0:0,-1.80618,-21.5742 dDocent_Contig_15447 22 . C T 39.7442 . AB=0.153846;ABP=30.0702;AC=2;AF=0.333333;AN=6;AO=4;CIGAR=1X;DP=59;DPB=59;DPRA=0.393939;EPP=11.6962;EPPR=122.441;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=59.8727;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=0.981818;PAO=0;PQA=0;PQR=0;PRO=0;QA=160;QR=2209;RO=55;RPL=0;RPP=11.6962;RPPR=122.441;RPR=4;RUN=1;SAF=4;SAP=11.6962;SAR=0;SRF=55;SRP=122.441;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:19:16,3:16:642:3:119:-5.37544,0,-52.3827 0/1:7:6,1:6:243:1:41:-1.98736,0,-20.1408 0/0:33:33,0:33:1324:0:0:0,-9.93399,-119.42 dDocent_Contig_15448 69 . G C 45.7122 . AB=0.2;ABP=14.7363;AC=1;AF=0.166667;AN=6;AO=3;CIGAR=1X;DP=26;DPB=26;DPRA=2.72727;EPP=9.52472;EPPR=52.9542;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=117;QR=891;RO=23;RPL=3;RPP=9.52472;RPPR=52.9542;RPR=0;RUN=1;SAF=3;SAP=9.52472;SAR=0;SRF=23;SRP=52.9542;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:8:8,0:8:306:0:0:0,-2.40824,-27.9008 0/0:3:3,0:3:121:0:0:0,-0.90309,-11.28 0/1:15:12,3:12:464:3:117:-6.39493,0,-37.5961 dDocent_Contig_15449 77 . G T 128.486 . AB=0.333333;ABP=7.35324;AC=1;AF=0.166667;AN=6;AO=6;CIGAR=1X;DP=37;DPB=37;DPRA=1.89474;EPP=16.0391;EPPR=70.3259;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=0.516129;PAO=0;PQA=0;PQR=0;PRO=0;QA=216;QR=1115;RO=31;RPL=6;RPP=16.0391;RPPR=70.3259;RPR=0;RUN=1;SAF=6;SAP=16.0391;SAR=0;SRF=31;SRP=70.3259;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:18:12,6:12:428:6:216:-14.3715,0,-33.4389 0/0:10:10,0:10:367:0:0:0,-3.0103,-33.3753 0/0:9:9,0:9:320:0:0:0,-2.70927,-29.1403 dDocent_Contig_15450 125 . G A 4802.17 . AB=0.641379;ABP=53.3585;AC=3;AF=0.5;AN=6;AO=186;CIGAR=1X;DP=290;DPB=290;DPRA=0;EPP=406.904;EPPR=228.843;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=0;PAIREDR=0.240385;PAO=0;PQA=0;PQR=0;PRO=0;QA=6358;QR=3577;RO=104;RPL=0;RPP=406.904;RPPR=228.843;RPR=186;RUN=1;SAF=0;SAP=406.904;SAR=186;SRF=0;SRP=228.843;SRR=104;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:141:60,81:60:2051:81:2765:-206.657,0,-142.415 0/1:38:12,26:12:409:26:893:-69.2454,0,-25.6979 0/1:111:32,79:32:1117:79:2700:-209.838,0,-67.4242 dDocent_Contig_15451 84 . T C 97.7228 . AB=0.3;ABP=9.95901;AC=2;AF=0.333333;AN=6;AO=6;CIGAR=1X;DP=33;DPB=33;DPRA=0.769231;EPP=16.0391;EPPR=61.6401;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=207;QR=937;RO=27;RPL=6;RPP=16.0391;RPPR=61.6401;RPR=0;RUN=1;SAF=6;SAP=16.0391;SAR=0;SRF=27;SRP=61.6401;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:13:13,0:13:454:0:0:0,-3.91339,-41.1933 0/1:10:8,2:8:277:2:68:-3.44763,0,-22.2567 0/1:10:6,4:6:206:4:139:-9.84239,0,-15.8663 dDocent_Contig_15452 51 . C A 801.189 . AB=0.491803;ABP=3.0459;AC=2;AF=0.5;AN=4;AO=30;CIGAR=1X;DP=61;DPB=61;DPRA=0;EPP=68.1545;EPPR=70.3259;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=2;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=1128;QR=1212;RO=31;RPL=30;RPP=68.1545;RPPR=70.3259;RPR=0;RUN=1;SAF=30;SAP=68.1545;SAR=0;SRF=31;SRP=70.3259;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:35:21,14:21:836:14:544:-38.7615,0,-65.02 ./.:.:.:.:.:.:.:. 0/1:26:10,16:10:376:16:584:-45.0564,0,-26.3607 dDocent_Contig_15453 27 . C A 124.49 . AB=0.5;ABP=3.0103;AC=1;AF=0.166667;AN=6;AO=6;CIGAR=1X;DP=82;DPB=82;DPRA=2.0625;EPP=16.0391;EPPR=168.042;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=228;QR=3015;RO=76;RPL=0;RPP=16.0391;RPPR=168.042;RPR=6;RUN=1;SAF=6;SAP=16.0391;SAR=0;SRF=76;SRP=168.042;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:56:55,1:55:2183:1:40:0,-12.862,-192.648 0/0:16:16,0:16:636:0:0:0,-4.81648,-57.5724 0/1:10:5,5:5:196:5:188:-14.2729,0,-15.0028 dDocent_Contig_15457 20 . C T 371.161 . AB=0.378378;ABP=7.76406;AC=2;AF=0.333333;AN=6;AO=14;CIGAR=1X;DP=44;DPB=44;DPRA=2.64286;EPP=33.4109;EPPR=68.1545;GTI=0;LEN=1;MEANALT=1;MQM=59.9286;MQMR=60;NS=3;NUMALT=1;ODDS=3.46945e-18;PAIRED=0.928571;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=567;QR=1202;RO=30;RPL=0;RPP=33.4109;RPPR=68.1545;RPR=14;RUN=1;SAF=14;SAP=33.4109;SAR=0;SRF=30;SRP=68.1545;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:25:21,4:21:837:4:162:-7.44121,0,-68.1135 0/1:12:2,10:2:82:10:405:-33.1968,0,-4.16732 0/0:7:7,0:7:283:0:0:0,-2.10721,-25.8434 dDocent_Contig_15458 80 . A G 162.693 . AB=0.411765;ABP=4.1599;AC=1;AF=0.166667;AN=6;AO=7;CIGAR=1X;DP=31;DPB=31;DPRA=2.42857;EPP=18.2106;EPPR=55.1256;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=254;QR=879;RO=24;RPL=7;RPP=18.2106;RPPR=55.1256;RPR=0;RUN=1;SAF=7;SAP=18.2106;SAR=0;SRF=24;SRP=55.1256;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:8:8,0:8:306:0:0:0,-2.40824,-27.9008 0/0:6:6,0:6:213:0:0:0,-1.80618,-19.515 0/1:17:10,7:10:360:7:254:-18.0932,0,-27.6253 dDocent_Contig_15459 19 . G A 43.8152 . AB=0.128205;ABP=49.8362;AC=2;AF=0.333333;AN=6;AO=5;CIGAR=1X;DP=47;DPB=47;DPRA=2.4375;EPP=13.8677;EPPR=94.2121;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=0.904762;PAO=0;PQA=0;PQR=0;PRO=0;QA=200;QR=1651;RO=42;RPL=0;RPP=13.8677;RPPR=94.2121;RPR=5;RUN=1;SAF=5;SAP=13.8677;SAR=0;SRF=42;SRP=94.2121;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:17:14,3:14:541:3:118:-5.88407,0,-43.9043 0/1:22:20,2:20:786:2:82:-1.15702,0,-64.4339 0/0:8:8,0:8:324:0:0:0,-2.40824,-29.5292 dDocent_Contig_15460 23 . G A 43.9887 . AB=0.148148;ABP=32.0437;AC=1;AF=0.166667;AN=6;AO=5;CIGAR=1X;DP=49;DPB=49;DPRA=7.66667;EPP=13.8677;EPPR=98.5551;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=186;QR=1728;RO=44;RPL=0;RPP=13.8677;RPPR=98.5551;RPR=5;RUN=1;SAF=5;SAP=13.8677;SAR=0;SRF=44;SRP=98.5551;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:27:23,4:23:911:4:152:-5.92155,0,-74.1653 0/0:19:18,1:18:719:1:34:0,-2.32066,-61.638 0/0:3:3,0:3:98:0:0:0,-0.90309,-9.13754 dDocent_Contig_15461 13 . G A 201.324 . AB=0.0431034;ABP=213.344;AC=1;AF=0.166667;AN=6;AO=54;CIGAR=1X5M;DP=779;DPB=873;DPRA=0;EPP=120.27;EPPR=1290.69;GTI=0;LEN=1;MEANALT=9;MQM=51;MQMR=45.3423;NS=3;NUMALT=3;ODDS=0;PAIRED=0.851852;PAIREDR=0.897133;PAO=0;PQA=0;PQR=0;PRO=0;QA=2022;QR=23417;RO=593;RPL=0;RPP=120.27;RPPR=1290.69;RPR=54;RUN=1;SAF=54;SAP=120.27;SAR=0;SRF=593;SRP=1290.69;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|0:388:297,23,0,32:297:11729:23,0,32:877,0,1129:0,-21.2074,-887.517,-89.4059,-894.441,-962.637,-0.515539,-805.545,-873.741,-864.108 0|1:116:76,14,9,5:76:2993:14,9,5:551,359,201:-21.9559,0,-219.489,-16.821,-195.695,-237.806,-28.4906,-207.364,-224.176,-250.679 0|0:275:220,19,5,17:220:8695:19,5,17:745,198,692:0,-7.70058,-637.994,-51.1833,-628.668,-685.696,-9.25837,-586.751,-630.238,-640.166 dDocent_Contig_15462 15 . A C 209.135 . AB=0.227273;ABP=31.4368;AC=2;AF=0.333333;AN=6;AO=10;CIGAR=1X4M;DP=54;DPB=54;DPRA=2.2;EPP=24.725;EPPR=94.2121;GTI=0;LEN=1;MEANALT=1.5;MQM=60;MQMR=60;NS=3;NUMALT=2;ODDS=3.46945e-18;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=407;QR=1672;RO=42;RPL=0;RPP=24.725;RPPR=94.2121;RPR=10;RUN=1;SAF=10;SAP=24.725;SAR=0;SRF=42;SRP=94.2121;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|1:37:29,0,8:29:1151:0,8:0,325:-18.4813,-27.2112,-121.954,0,-95.1468,-92.7385 0|0:10:10,0,0:10:399:0,0:0,0:0,-3.0103,-36.2701,-3.0103,-36.2701,-36.2701 0|1:7:3,2,2:3:122:2,2:80,82:-5.87002,-0.188103,-9.64731,0,-3.47989,-9.46514 dDocent_Contig_15463 32 . T C 610.622 . AB=0.211538;ABP=40.5935;AC=2;AF=0.333333;AN=6;AO=11;CIGAR=1X1M1X;DP=103;DPB=103;DPRA=0;EPP=26.8965;EPPR=163.699;GTI=0;LEN=1;MEANALT=1.5;MQM=60;MQMR=60;NS=3;NUMALT=2;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=439;QR=2842;RO=74;RPL=0;RPP=26.8965;RPPR=163.699;RPR=11;RUN=1;SAF=11;SAP=26.8965;SAR=0;SRF=74;SRP=163.699;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|0:51:35,0,16:35:1319:0,16:0,631:-41.7689,-52.305,-160.355,0,-108.439,-103.622 0|1:10:4,6,0:4:158:6,0:236,0:-18.602,0,-11.5904,-19.8061,-13.3965,-32.8087 0|1:42:35,5,2:35:1365:5,2:203,79:-6.21415,0,-110.685,-10.2527,-105.689,-121.831 dDocent_Contig_15465 90 . T A 369.344 . AB=0.296875;ABP=25.9465;AC=2;AF=0.5;AN=4;AO=19;CIGAR=1X;DP=64;DPB=64;DPRA=0;EPP=44.2683;EPPR=100.727;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=2;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=658;QR=1551;RO=45;RPL=19;RPP=44.2683;RPPR=100.727;RPR=0;RUN=1;SAF=19;SAP=44.2683;SAR=0;SRF=45;SRP=100.727;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:53:36,17:36:1243:17:592:-37.6532,0,-96.2196 ./.:.:.:.:.:.:.:. 0/1:11:9,2:9:308:2:66:-2.95685,0,-24.7408 dDocent_Contig_15466 195 . G A 86.3968 . AB=0.227273;ABP=17.2236;AC=2;AF=0.333333;AN=6;AO=5;CIGAR=1X;DP=23;DPB=23;DPRA=11;EPP=13.8677;EPPR=42.0968;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=200;QR=728;RO=18;RPL=5;RPP=13.8677;RPPR=42.0968;RPR=0;RUN=1;SAF=0;SAP=13.8677;SAR=5;SRF=0;SRP=42.0968;SRR=18;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:14:12,2:12:485:2:77:-3.09378,0,-39.7865 0/0:1:1,0:1:41:0:0:0,-0.30103,-4.09457 0/1:8:5,3:5:202:3:123:-9.05655,0,-16.1538 dDocent_Contig_15467 21 . C T 55.4269 . AB=0.230769;ABP=11.1951;AC=1;AF=0.166667;AN=6;AO=3;CIGAR=1X;DP=95;DPB=95;DPRA=0.317073;EPP=9.52472;EPPR=202.786;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=121;QR=3622;RO=92;RPL=0;RPP=9.52472;RPPR=202.786;RPR=3;RUN=1;SAF=3;SAP=9.52472;SAR=0;SRF=92;SRP=202.786;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:54:54,0:54:2135:0:0:0,-16.2556,-192.327 0/1:13:10,3:10:400:3:121:-7.3666,0,-32.4467 0/0:28:28,0:28:1087:0:0:0,-8.42884,-98.1146 dDocent_Contig_15468 11 . A T 83.9613 . AB=0.239437;ABP=86.7496;AC=1;AF=0.166667;AN=6;AO=44;CIGAR=2X2M1X;DP=222;DPB=222;DPRA=0;EPP=98.5551;EPPR=385.189;GTI=0;LEN=1;MEANALT=1.66667;MQM=16.8636;MQMR=59.0057;NS=3;NUMALT=1;ODDS=0;PAIRED=0;PAIREDR=0.931818;PAO=0;PQA=0;PQR=0;PRO=0;QA=1685;QR=6941;RO=176;RPL=0;RPP=98.5551;RPPR=385.189;RPR=44;RUN=1;SAF=44;SAP=98.5551;SAR=0;SRF=176;SRP=385.189;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|1:142:106,34:106:4201:34:1303:-9.91875,0,-333.221 0|0:28:22,6:22:874:6:231:0,-0.739804,-70.1663 0|0:52:48,4:48:1866:4:151:0,-9.01051,-161.519 dDocent_Contig_15469 28 . T C 2239.53 . AB=0.697479;ABP=43.3194;AC=3;AF=0.5;AN=6;AO=83;CIGAR=4M1X;DP=119;DPB=117.8;DPRA=0;EPP=183.243;EPPR=68.1545;GTI=0;LEN=1;MEANALT=1.33333;MQM=37.9518;MQMR=60;NS=3;NUMALT=2;ODDS=0;PAIRED=0.951807;PAIREDR=0.733333;PAO=0;PQA=0;PQR=0;PRO=0;QA=3335;QR=1197;RO=30;RPL=0;RPP=183.243;RPPR=68.1545;RPR=83;RUN=1;SAF=83;SAP=183.243;SAR=0;SRF=30;SRP=68.1545;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|1:45:14,0,31:14:555:0,31:0,1245:-79.2814,-83.4959,-129.198,0,-46.0784,-36.7465 0|1:40:7,6,27:7:280:6,27:227,1079:-78.493,-63.3313,-84.5974,0,-5.84042,-14.9623 0|1:34:9,0,25:9:362:0,25:0,1011:-71.7011,-74.4104,-104.255,0,-30.2355,-22.7097 dDocent_Contig_15470 56 . C T 1874.82 . AB=0.738095;ABP=44.3717;AC=3;AF=0.5;AN=6;AO=62;CIGAR=1X;DP=84;DPB=84;DPRA=0;EPP=137.642;EPPR=50.7827;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=6.93889e-18;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=2415;QR=873;RO=22;RPL=62;RPP=137.642;RPPR=50.7827;RPR=0;RUN=1;SAF=62;SAP=137.642;SAR=0;SRF=22;SRP=50.7827;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:50:9,41:9:358:41:1621:-131.075,0,-17.5306 0/1:20:3,17:3:119:17:637:-51.6371,0,-5.07479 0/1:14:10,4:10:396:4:157:-10.2933,0,-31.7842 dDocent_Contig_15471 26 . A C 135.637 . AB=0.18;ABP=47.4821;AC=3;AF=0.5;AN=6;AO=9;CIGAR=1X;DP=50;DPB=50;DPRA=0;EPP=22.5536;EPPR=92.0407;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=0.777778;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=366;QR=1644;RO=41;RPL=0;RPP=22.5536;RPPR=92.0407;RPR=9;RUN=1;SAF=9;SAP=22.5536;SAR=0;SRF=41;SRP=92.0407;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:28:25,3:25:1007:3:121:-2.85115,0,-82.4931 0/1:16:12,4:12:478:4:163:-10.2419,0,-38.5542 0/1:6:4,2:4:159:2:82:-5.9735,0,-12.8853 dDocent_Contig_15472 133 . C T 489.872 . AB=0.703704;ABP=12.7417;AC=2;AF=0.333333;AN=6;AO=19;CIGAR=1X;DP=38;DPB=38;DPRA=1.22727;EPP=44.2683;EPPR=44.2683;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=0.947368;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=664;QR=642;RO=19;RPL=0;RPP=44.2683;RPPR=44.2683;RPR=19;RUN=1;SAF=0;SAP=44.2683;SAR=19;SRF=0;SRP=44.2683;SRR=19;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:22:7,15:7:220:15:526:-41.0481,0,-13.4831 0/1:5:1,4:1:34:4:138:-11.255,0,-1.89376 0/0:11:11,0:11:388:0:0:0,-3.31133,-35.2579 dDocent_Contig_15473 110 . G A 64.969 . AB=0.25;ABP=11.6962;AC=1;AF=0.25;AN=4;AO=4;CIGAR=1X;DP=26;DPB=26;DPRA=1.6;EPP=11.6962;EPPR=50.7827;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=2;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=144;QR=763;RO=22;RPL=0;RPP=11.6962;RPPR=50.7827;RPR=4;RUN=1;SAF=0;SAP=11.6962;SAR=4;SRF=0;SRP=50.7827;SRR=22;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:10:10,0:10:353:0:0:0,-3.0103,-32.1079 ./.:.:.:.:.:.:.:. 0/1:16:12,4:12:410:4:144:-8.4969,0,-32.4101 dDocent_Contig_15474 57 . A G 67.4721 . AB=0.3;ABP=6.48466;AC=1;AF=0.166667;AN=6;AO=3;CIGAR=1X;DP=20;DPB=20;DPRA=2;EPP=9.52472;EPPR=39.9253;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=121;QR=667;RO=17;RPL=3;RPP=9.52472;RPPR=39.9253;RPR=0;RUN=1;SAF=3;SAP=9.52472;SAR=0;SRF=17;SRP=39.9253;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:10:7,3:7:280:3:121:-8.2699,0,-22.5609 0/0:3:3,0:3:119:0:0:0,-0.90309,-11.095 0/0:7:7,0:7:268:0:0:0,-2.10721,-24.4764 dDocent_Contig_15476 33 . A G 358.823 . AB=0.333333;ABP=13.1438;AC=2;AF=0.333333;AN=6;AO=16;CIGAR=1X;DP=108;DPB=108;DPRA=0;EPP=37.7539;EPPR=202.786;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=652;QR=3681;RO=92;RPL=0;RPP=37.7539;RPPR=202.786;RPR=16;RUN=1;SAF=16;SAP=37.7539;SAR=0;SRF=92;SRP=202.786;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:66:64,2:64:2569:2:82:0,-12.0883,-223.562 0/1:10:7,3:7:271:3:122:-8.36219,0,-21.7418 0/1:32:21,11:21:841:11:448:-31.043,0,-66.3699 dDocent_Contig_15478 17 . A C 879.447 . AB=0.566038;ABP=5.01789;AC=2;AF=0.5;AN=4;AO=30;CIGAR=1X;DP=53;DPB=53;DPRA=0;EPP=68.1545;EPPR=52.9542;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=2;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=1188;QR=937;RO=23;RPL=0;RPP=68.1545;RPPR=52.9542;RPR=30;RUN=1;SAF=30;SAP=68.1545;SAR=0;SRF=23;SRP=52.9542;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:41:15,26:15:610:26:1024:-80.1062,0,-42.895 ./.:.:.:.:.:.:.:. 0/1:12:8,4:8:327:4:164:-11.5375,0,-26.1877 dDocent_Contig_15479 17 . T C 99.5666 . AB=0.363636;ABP=4.78696;AC=1;AF=0.25;AN=4;AO=4;CIGAR=1X;DP=33;DPB=33;DPRA=0.5;EPP=11.6962;EPPR=65.983;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=2;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=162;QR=1164;RO=29;RPL=0;RPP=11.6962;RPPR=65.983;RPR=4;RUN=1;SAF=4;SAP=11.6962;SAR=0;SRF=29;SRP=65.983;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:11:7,4:7:286:4:162:-11.6556,0,-22.8035 ./.:.:.:.:.:.:.:. 0/0:22:22,0:22:878:0:0:0,-6.62266,-79.3298 dDocent_Contig_15480 53 . A G 127.547 . AB=0.173077;ABP=51.2838;AC=1;AF=0.166667;AN=6;AO=9;CIGAR=1X;DP=87;DPB=87;DPRA=2.97143;EPP=22.5536;EPPR=168.042;GTI=0;LEN=1;MEANALT=2;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=330;QR=2954;RO=76;RPL=9;RPP=22.5536;RPPR=168.042;RPR=0;RUN=1;SAF=9;SAP=22.5536;SAR=0;SRF=76;SRP=168.042;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:52:42,9:42:1616:9:330:-14.2775,0,-129.913 0/0:13:13,0:13:526:0:0:0,-3.91339,-47.6874 0/0:22:21,0:21:812:0:0:0,-6.32163,-73.0091 dDocent_Contig_15481 10 . T A 8606.61 . AB=0.120112;ABP=451.765;AC=2;AF=0.333333;AN=6;AO=43;CIGAR=1M1X2M1X1M;DP=358;DPB=367;DPRA=0;EPP=96.3836;EPPR=85.5263;GTI=0;LEN=1;MEANALT=4;MQM=60;MQMR=60;NS=3;NUMALT=4;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=1695;QR=1468;RO=38;RPL=0;RPP=96.3836;RPPR=85.5263;RPR=43;RUN=1;SAF=43;SAP=96.3836;SAR=0;SRF=38;SRP=85.5263;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 1|0:209:19,25,0,0,159:19:727:25,0,0,159:972,0,0,6338:-536.395,-462.253,-514.379,-542.114,-521.905,-601.767,-542.114,-521.905,-601.767,-601.767,-20.2142,0,-79.8675,-79.8675,-32.0037 1|0:62:0,12,0,1,49:0:0:12,0,1,49:481,0,41,1927:-198.103,-158.472,-154.86,-198.103,-158.472,-198.103,-194.719,-155.088,-194.719,-194.418,-39.6212,0,-39.6212,-36.2364,-24.8707 0|0:87:19,6,9,7,42:19:741:6,9,7,42:242,335,269,1669:-131.686,-117.456,-176.559,-109.988,-150.947,-168.187,-115.325,-156.284,-148.816,-174.126,0,-40.9605,-33.4948,-38.8307,-48.2684 dDocent_Contig_15482 163 . T G 203.796 . AB=0.28125;ABP=16.3106;AC=2;AF=0.5;AN=4;AO=9;CIGAR=1X;DP=32;DPB=32;DPRA=0;EPP=22.5536;EPPR=52.9542;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=2;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=366;QR=894;RO=23;RPL=9;RPP=22.5536;RPPR=52.9542;RPR=0;RUN=1;SAF=0;SAP=22.5536;SAR=9;SRF=0;SRP=52.9542;SRR=23;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:19:14,5:14:531:5:203:-12.9335,0,-42.3973 ./.:.:.:.:.:.:.:. 0/1:13:9,4:9:363:4:163:-11.145,0,-29.1209 dDocent_Contig_15483 104 . N G 75.4561 . AB=0;ABP=0;AC=4;AF=1;AN=4;AO=2;CIGAR=5X10I2M;DP=4;DPB=6.85714;DPRA=3;EPP=7.35324;EPPR=0;GTI=0;LEN=1;MEANALT=2;MQM=60;MQMR=0;NS=2;NUMALT=1;ODDS=0;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=77;QR=0;RO=0;RPL=0;RPP=7.35324;RPPR=0;RPR=2;RUN=1;SAF=2;SAP=7.35324;SAR=0;SRF=0;SRP=0;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 1|1:3:0,2:0:0:2:77:-6.9422,-0.60206,0 .:.:.:.:.:.:.:. 1|1:1:0,0:0:0:0:0:0,0,0 dDocent_Contig_15486 135 . T C 150.258 . AB=0.5;ABP=3.0103;AC=1;AF=0.25;AN=4;AO=6;CIGAR=1X;DP=18;DPB=18;DPRA=2;EPP=16.0391;EPPR=29.068;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=2;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=222;QR=470;RO=12;RPL=0;RPP=16.0391;RPPR=29.068;RPR=6;RUN=1;SAF=0;SAP=16.0391;SAR=6;SRF=0;SRP=29.068;SRR=12;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:12:6,6:6:242:6:222:-16.7248,0,-18.5446 0/0:6:6,0:6:228:0:0:0,-1.80618,-20.8819 ./.:.:.:.:.:.:.:. dDocent_Contig_15488 63 . A G 1113.92 . AB=0.612903;ABP=9.87495;AC=3;AF=0.5;AN=6;AO=38;CIGAR=1X;DP=62;DPB=62;DPRA=0;EPP=85.5263;EPPR=55.1256;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=0.947368;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=1495;QR=915;RO=24;RPL=38;RPP=85.5263;RPPR=55.1256;RPR=0;RUN=1;SAF=38;SAP=85.5263;SAR=0;SRF=24;SRP=55.1256;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:35:14,21:14:557:21:834:-64.8376,0,-39.9356 0/1:13:2,11:2:82:11:424:-34.5877,0,-3.86629 0/1:14:8,6:8:276:6:237:-17.488,0,-20.9468 dDocent_Contig_15491 73 . T A 492.569 . AB=0.117647;ABP=24.5973;AC=0;AF=0;AN=6;AO=2;CIGAR=3X;DP=35;DPB=35;DPRA=0;EPP=7.35324;EPPR=31.2394;GTI=0;LEN=1;MEANALT=2;MQM=60;MQMR=60;NS=3;NUMALT=2;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=74;QR=480;RO=13;RPL=2;RPP=7.35324;RPPR=31.2394;RPR=0;RUN=1;SAF=2;SAP=7.35324;SAR=0;SRF=13;SRP=31.2394;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|0:17:5,2,10:5:192:2,10:74,337:-25.5573,-21.0025,-36.1782,0,-9.72117,-12.7609 0|0:5:1,0,4:1:38:0,4:0,156:-12.9121,-13.2132,-16.3277,0,-3.49624,-2.29212 0|0:13:7,0,6:7:250:0,6:0,220:-16.2421,-18.3493,-38.7262,0,-20.739,-18.9329 dDocent_Contig_15494 31 . G C 118.181 . AB=0.233333;ABP=21.5402;AC=3;AF=0.5;AN=6;AO=7;CIGAR=1X;DP=30;DPB=30;DPRA=0;EPP=18.2106;EPPR=52.9542;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=280;QR=928;RO=23;RPL=0;RPP=18.2106;RPPR=52.9542;RPR=7;RUN=1;SAF=7;SAP=18.2106;SAR=0;SRF=23;SRP=52.9542;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:13:10,3:10:397:3:119:-7.18111,0,-32.1705 0/1:7:5,2:5:203:2:82:-5.67247,0,-16.5458 0/1:10:8,2:8:328:2:79:-4.48694,0,-26.88 dDocent_Contig_15495 44 . A T 31.5296 . AB=0.222222;ABP=9.04217;AC=1;AF=0.166667;AN=6;AO=2;CIGAR=1X;DP=21;DPB=21;DPRA=1.5;EPP=7.35324;EPPR=44.2683;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=81;QR=758;RO=19;RPL=0;RPP=7.35324;RPPR=44.2683;RPR=2;RUN=1;SAF=2;SAP=7.35324;SAR=0;SRF=19;SRP=44.2683;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:4:4,0:4:159:0:0:0,-1.20412,-14.692 0/0:8:8,0:8:315:0:0:0,-2.40824,-28.7125 0/1:9:7,2:7:284:2:81:-4.97646,0,-23.2247 dDocent_Contig_15496 16 . C T 690.32 . AB=0.318681;ABP=28.9964;AC=3;AF=0.5;AN=6;AO=29;CIGAR=2X;DP=91;DPB=91;DPRA=0;EPP=65.983;EPPR=137.642;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=1121;QR=2441;RO=62;RPL=0;RPP=65.983;RPPR=137.642;RPR=29;RUN=1;SAF=29;SAP=65.983;SAR=0;SRF=62;SRP=137.642;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|1:56:42,14:42:1640:14:539:-31.9927,0,-130.977 0|1:11:8,3:8:325:3:114:-7.31876,0,-26.3081 0|1:24:12,12:12:476:12:468:-35.2434,0,-35.9645 dDocent_Contig_15497 174 . A T 102.26 . AB=0.363636;ABP=4.78696;AC=1;AF=0.166667;AN=6;AO=6;CIGAR=1X;DP=38;DPB=38;DPRA=18.5;EPP=16.0391;EPPR=72.4974;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=1.73472e-18;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=244;QR=1293;RO=32;RPL=6;RPP=16.0391;RPPR=72.4974;RPR=0;RUN=1;SAF=0;SAP=16.0391;SAR=6;SRF=0;SRP=72.4974;SRR=32;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:11:7,4:7:284:4:163:-11.7471,0,-22.6227 0/0:1:1,0:1:40:0:0:0,-0.30103,-3.99568 0/0:26:24,2:24:969:2:81:0,-0.141046,-79.8236 dDocent_Contig_15498 109 . A C 290.656 . AB=0.0704225;ABP=230.617;AC=0;AF=0;AN=6;AO=10;CIGAR=1X2M1X;DP=150;DPB=150;DPRA=0;EPP=24.725;EPPR=250.558;GTI=0;LEN=1;MEANALT=3;MQM=60;MQMR=60;NS=3;NUMALT=2;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=345;QR=3722;RO=114;RPL=0;RPP=24.725;RPPR=250.558;RPR=10;RUN=1;SAF=0;SAP=24.725;SAR=10;SRF=0;SRP=250.558;SRR=114;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|0:80:58,6,15:58:1900:6,15:207,518:-24.6277,-25.2704,-176.939,0,-136.654,-148.957 0|0:8:7,0,1:7:236:0,1:0,35:-1.09039,-3.1976,-22.3126,0,-19.4633,-19.1622 0|0:62:49,4,8:49:1586:4,8:138,279:-7.94336,-11.4836,-138.208,0,-116.716,-125.521 dDocent_Contig_15499 16 . T A 1326.87 . AB=0.597222;ABP=8.92153;AC=3;AF=0.5;AN=6;AO=43;CIGAR=6M1X2M;DP=72;DPB=73;DPRA=0;EPP=96.3836;EPPR=46.4397;GTI=0;LEN=1;MEANALT=1.66667;MQM=60;MQMR=60;NS=3;NUMALT=2;ODDS=0;PAIRED=0.976744;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=1732;QR=792;RO=20;RPL=0;RPP=96.3836;RPPR=46.4397;RPR=43;RUN=1;SAF=43;SAP=96.3836;SAR=0;SRF=20;SRP=46.4397;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|1:36:11,5,20:11:436:5,20:188,801:-62.696,-50.6106,-84.9917,0,-20.5064,-29.881 0|1:26:8,4,14:8:316:4,14:148,562:-43.9204,-34.2288,-59.0251,0,-13.9208,-21.8049 0|1:10:1,0,9:1:40:0,9:0,369:-30.5652,-30.8662,-34.1603,0,-3.69465,-0.985379 dDocent_Contig_15500 21 . T A 66.782 . AB=0.375;ABP=4.09604;AC=1;AF=0.166667;AN=6;AO=4;CIGAR=1X;DP=63;DPB=63;DPRA=0.328947;EPP=11.6962;EPPR=131.127;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=0;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=158;QR=2365;RO=59;RPL=0;RPP=11.6962;RPPR=131.127;RPR=4;RUN=1;SAF=4;SAP=11.6962;SAR=0;SRF=59;SRP=131.127;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:38:38,0:38:1519:0:0:0,-11.4391,-136.943 0/1:8:5,3:5:196:3:117:-8.50197,0,-15.6048 0/0:17:16,1:16:650:1:41:0,-1.02294,-54.7385 dDocent_Contig_15504 1 . N A 151.502 . AB=0;ABP=0;AC=2;AF=1;AN=2;AO=4;CIGAR=1X;DP=4;DPB=4;DPRA=0;EPP=11.6962;EPPR=0;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=0;NS=1;NUMALT=1;ODDS=7.37776;PAIRED=1;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=164;QR=0;RO=0;RPL=0;RPP=11.6962;RPPR=0;RPR=4;RUN=1;SAF=4;SAP=11.6962;SAR=0;SRF=0;SRP=0;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL ./.:.:.:.:.:.:.:. ./.:.:.:.:.:.:.:. 1/1:4:0,4:0:0:4:164:-15.1499,-1.20412,0 dDocent_Contig_15505 54 . C T 75.3368 . AB=0.428571;ABP=3.32051;AC=1;AF=0.166667;AN=6;AO=3;CIGAR=1X;DP=40;DPB=40;DPRA=0.424242;EPP=9.52472;EPPR=83.3548;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=123;QR=1465;RO=37;RPL=3;RPP=9.52472;RPPR=83.3548;RPR=0;RUN=1;SAF=3;SAP=9.52472;SAR=0;SRF=37;SRP=83.3548;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:26:26,0:26:1028:0:0:0,-7.82678,-92.8129 0/0:7:7,0:7:282:0:0:0,-2.10721,-25.7528 0/1:7:4,3:4:155:3:123:-9.35758,0,-12.2154 dDocent_Contig_15506 93 . C A 57.9364 . AB=0.5;ABP=3.0103;AC=1;AF=0.166667;AN=6;AO=3;CIGAR=1X;DP=47;DPB=47;DPRA=0.292683;EPP=9.52472;EPPR=98.5551;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=101;QR=1495;RO=44;RPL=3;RPP=9.52472;RPPR=98.5551;RPR=0;RUN=1;SAF=3;SAP=9.52472;SAR=0;SRF=44;SRP=98.5551;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:20:20,0:20:684:0:0:0,-6.0206,-61.8796 0/1:6:3,3:3:97:3:101:-7.61755,0,-7.2446 0/0:21:21,0:21:714:0:0:0,-6.32163,-64.5774 dDocent_Contig_15507 119 . G A 543.452 . AB=0.462963;ABP=3.6537;AC=3;AF=0.5;AN=6;AO=25;CIGAR=1X;DP=54;DPB=54;DPRA=0;EPP=57.2971;EPPR=65.983;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=835;QR=995;RO=29;RPL=0;RPP=57.2971;RPPR=65.983;RPR=25;RUN=1;SAF=0;SAP=57.2971;SAR=25;SRF=0;SRP=65.983;SRR=29;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:30:19,11:19:645:11:373:-24.8663,0,-49.338 0/1:11:4,7:4:140:7:227:-17.4361,0,-9.6336 0/1:13:6,7:6:210:7:235:-17.5657,0,-15.3291 dDocent_Contig_15509 98 . N T 96.1844 . AB=0;ABP=0;AC=2;AF=1;AN=2;AO=4;CIGAR=1X;DP=4;DPB=4;DPRA=0;EPP=11.6962;EPPR=0;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=0;NS=1;NUMALT=1;ODDS=7.37776;PAIRED=1;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=104;QR=0;RO=0;RPL=4;RPP=11.6962;RPPR=0;RPR=0;RUN=1;SAF=4;SAP=11.6962;SAR=0;SRF=0;SRP=0;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL ./.:.:.:.:.:.:.:. ./.:.:.:.:.:.:.:. 1/1:4:0,4:0:0:4:104:-9.61817,-1.20412,0 dDocent_Contig_15510 23 . T C 89.0753 . AB=0.294118;ABP=9.26925;AC=1;AF=0.166667;AN=6;AO=7;CIGAR=1X;DP=92;DPB=92;DPRA=0;EPP=5.80219;EPPR=179.002;GTI=0;LEN=1;MEANALT=1;MQM=47.4286;MQMR=59.2235;NS=3;NUMALT=1;ODDS=0;PAIRED=0;PAIREDR=0.976471;PAO=0;PQA=0;PQR=0;PRO=0;QA=265;QR=3359;RO=85;RPL=0;RPP=18.2106;RPPR=187.585;RPR=7;RUN=1;SAF=5;SAP=5.80219;SAR=2;SRF=84;SRP=179.002;SRR=1;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:48:47,1:47:1845:1:41:0,-10.3549,-162.101 0/1:17:12,5:12:470:5:183:-10.7314,0,-37.4248 0/0:27:26,1:26:1044:1:41:0,-4.03324,-90.1518 dDocent_Contig_15511 121 . G A 54.8261 . AB=0.196078;ABP=43.9277;AC=2;AF=0.333333;AN=6;AO=11;CIGAR=1X;DP=82;DPB=82;DPRA=0;EPP=26.8965;EPPR=157.185;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=284;QR=2413;RO=71;RPL=0;RPP=26.8965;RPPR=157.185;RPR=11;RUN=1;SAF=0;SAP=26.8965;SAR=11;SRF=0;SRP=157.185;SRR=71;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:39:33,6:33:1113:6:180:-4.75606,0,-88.7344 0/1:12:8,4:8:276:4:85:-4.24836,0,-21.5636 0/0:31:30,1:30:1024:1:19:0,-7.43196,-90.569 dDocent_Contig_15513 98 . N C 56.9965 . AB=0;ABP=0;AC=2;AF=1;AN=2;AO=2;CIGAR=1X;DP=2;DPB=2;DPRA=0;EPP=7.35324;EPPR=0;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=0;NS=1;NUMALT=1;ODDS=5.99146;PAIRED=1;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=60;QR=0;RO=0;RPL=2;RPP=7.35324;RPPR=0;RPR=0;RUN=1;SAF=2;SAP=7.35324;SAR=0;SRF=0;SRP=0;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 1/1:2:0,2:0:0:2:60:-5.69857,-0.60206,0 ./.:.:.:.:.:.:.:. ./.:.:.:.:.:.:.:. dDocent_Contig_15514 30 . C A 66.3099 . AB=0.3;ABP=6.48466;AC=1;AF=0.166667;AN=6;AO=3;CIGAR=1X;DP=17;DPB=17;DPRA=2.85714;EPP=9.52472;EPPR=33.4109;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=123;QR=561;RO=14;RPL=0;RPP=9.52472;RPPR=33.4109;RPR=3;RUN=1;SAF=3;SAP=9.52472;SAR=0;SRF=14;SRP=33.4109;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:2:2,0:2:78:0:0:0,-0.60206,-7.40278 0/1:10:7,3:7:279:3:123:-8.45449,0,-22.4697 0/0:5:5,0:5:204:0:0:0,-1.50515,-18.744 dDocent_Contig_15516 186 . G A 41.2338 . AB=0.555556;ABP=3.49285;AC=1;AF=0.166667;AN=6;AO=12;CIGAR=1X;DP=62;DPB=62;DPRA=1.32353;EPP=29.068;EPPR=111.584;GTI=0;LEN=1;MEANALT=1;MQM=13.0833;MQMR=25.02;NS=3;NUMALT=1;ODDS=0;PAIRED=0;PAIREDR=0.34;PAO=0;PQA=0;PQR=0;PRO=0;QA=484;QR=1951;RO=50;RPL=12;RPP=29.068;RPPR=111.584;RPR=0;RUN=1;SAF=0;SAP=29.068;SAR=12;SRF=0;SRP=111.584;SRR=50;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:27:25,2:25:964:2:81:0,-5.09068,-31.3467 0/1:18:8,10:8:322:10:403:-5.94725,0,-8.34473 0/0:17:17,0:17:665:0:0:0,-5.11751,-33.9105 dDocent_Contig_15517 78 . C A 687.146 . AB=0.2;ABP=10.8276;AC=3;AF=0.5;AN=6;AO=22;CIGAR=1X;DP=50;DPB=50;DPRA=0.888889;EPP=50.7827;EPPR=63.8115;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=858;QR=1007;RO=28;RPL=22;RPP=50.7827;RPPR=63.8115;RPR=0;RUN=1;SAF=22;SAP=50.7827;SAR=0;SRF=28;SRP=63.8115;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 1/1:22:2,20:2:49:20:786:-66.4112,-1.97282,0 0/1:10:8,2:8:309:2:72:-3.82402,0,-25.1605 0/0:18:18,0:18:649:0:0:0,-5.41854,-58.7322 dDocent_Contig_15518 21 . G A 60.098 . AB=0.16;ABP=28.1125;AC=1;AF=0.166667;AN=6;AO=4;CIGAR=1X;DP=61;DPB=61;DPRA=1.38889;EPP=11.6962;EPPR=126.784;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=1.73472e-18;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=163;QR=2254;RO=57;RPL=0;RPP=11.6962;RPPR=126.784;RPR=4;RUN=1;SAF=4;SAP=11.6962;SAR=0;SRF=57;SRP=126.784;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:25:21,4:21:832:4:163:-7.53268,0,-67.6703 0/0:18:18,0:18:697:0:0:0,-5.41854,-63.054 0/0:18:18,0:18:725:0:0:0,-5.41854,-65.5751 dDocent_Contig_15519 11 . T C 253.458 . AB=0.25;ABP=29.068;AC=2;AF=0.333333;AN=6;AO=12;CIGAR=1X;DP=56;DPB=56;DPRA=3;EPP=29.068;EPPR=98.5551;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=473;QR=1600;RO=44;RPL=0;RPP=29.068;RPPR=98.5551;RPR=12;RUN=1;SAF=12;SAP=29.068;SAR=0;SRF=44;SRP=98.5551;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:23:20,3:20:752:3:121:-4.35651,0,-61.078 0/0:8:8,0:8:254:0:0:0,-2.40824,-23.163 0/1:25:16,9:16:594:9:352:-24.5116,0,-46.2679 dDocent_Contig_15520 53 . G C 163.628 . AB=0.214286;ABP=32.7905;AC=2;AF=0.333333;AN=6;AO=9;CIGAR=1X;DP=139;DPB=139;DPRA=0.216495;EPP=22.5536;EPPR=285.302;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=3.46945e-18;PAIRED=1;PAIREDR=0.969231;PAO=0;PQA=0;PQR=0;PRO=0;QA=353;QR=5184;RO=130;RPL=9;RPP=22.5536;RPPR=285.302;RPR=0;RUN=1;SAF=9;SAP=22.5536;SAR=0;SRF=130;SRP=285.302;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:97:97,0:97:3877:0:0:0,-29.1999,-348.929 0/1:21:15,6:15:596:6:231:-14.8347,0,-47.6559 0/1:21:18,3:18:711:3:122:-5.05086,0,-57.9939 dDocent_Contig_15521 117 . T C 192.846 . AB=0.666667;ABP=5.9056;AC=1;AF=0.166667;AN=6;AO=10;CIGAR=1X2M1I4M1X3M;DP=65;DPB=66;DPRA=4.14286;EPP=24.725;EPPR=120.27;GTI=0;LEN=1;MEANALT=1.5;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=3.46945e-18;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=339;QR=1844;RO=54;RPL=0;RPP=24.725;RPPR=120.27;RPR=10;RUN=1;SAF=0;SAP=24.725;SAR=10;SRF=0;SRP=120.27;SRR=54;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|0:46:43,2:43:1461:2:68:0,-7.42831,-125.322 0|0:7:7,0:7:242:0:0:0,-2.10721,-22.1174 0|1:12:4,8:4:141:8:271:-21.1085,0,-9.42474 dDocent_Contig_15522 59 . T C 75.7976 . AB=0;ABP=0;AC=2;AF=0.333333;AN=6;AO=2;CIGAR=1X;DP=23;DPB=23;DPRA=0.190476;EPP=7.35324;EPPR=46.4397;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=8.67362e-19;PAIRED=0;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=78;QR=772;RO=20;RPL=2;RPP=7.35324;RPPR=46.4397;RPR=0;RUN=1;SAF=2;SAP=7.35324;SAR=0;SRF=20;SRP=46.4397;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:8:8,0:8:311:0:0:0,-2.40824,-28.3528 1/1:2:0,2:0:0:2:78:-7.4033,-0.60206,0 0/0:13:12,0:12:461:0:0:0,-3.61236,-41.4605 dDocent_Contig_15523 12 . C G 643.268 . AB=0.6875;ABP=12.7819;AC=2;AF=0.333333;AN=6;AO=22;CIGAR=2X;DP=34;DPB=34;DPRA=8;EPP=50.7827;EPPR=29.068;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=853;QR=454;RO=12;RPL=0;RPP=50.7827;RPPR=29.068;RPR=22;RUN=1;SAF=22;SAP=50.7827;SAR=0;SRF=12;SRP=29.068;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|1:22:5,17:5:188:17:656:-52.7531,0,-10.6579 0|1:10:5,5:5:188:5:197:-15.0963,0,-14.2732 0|0:2:2,0:2:78:0:0:0,-0.60206,-7.4033 dDocent_Contig_15524 16 . T C 874.056 . AB=0.258993;ABP=73.1379;AC=3;AF=0.5;AN=6;AO=36;CIGAR=1X1M;DP=139;DPB=139;DPRA=0;EPP=81.1833;EPPR=198.443;GTI=0;LEN=1;MEANALT=2.33333;MQM=60;MQMR=60;NS=3;NUMALT=2;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=1455;QR=3605;RO=90;RPL=0;RPP=81.1833;RPPR=198.443;RPR=36;RUN=1;SAF=36;SAP=81.1833;SAR=0;SRF=90;SRP=198.443;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|1:58:43,6,9:43:1711:6,9:244,364:-17.065,-9.88197,-148.941,0,-120.735,-138.153 0|1:30:15,0,13:15:604:0,13:0,522:-38.5581,-43.0735,-92.8587,0,-49.8438,-45.9304 0|1:51:32,5,14:32:1290:5,14:199,569:-37.3053,-30.5565,-135.379,0,-89.9513,-102.12 dDocent_Contig_15525 7 . A G 323.469 . AB=0.361702;ABP=10.8184;AC=2;AF=0.333333;AN=6;AO=17;CIGAR=1X;DP=59;DPB=59;DPRA=1.95833;EPP=39.9253;EPPR=94.2121;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=57;NS=3;NUMALT=1;ODDS=3.46945e-18;PAIRED=1;PAIREDR=0.928571;PAO=0;PQA=0;PQR=0;PRO=0;QA=549;QR=1590;RO=42;RPL=0;RPP=39.9253;RPPR=94.2121;RPR=17;RUN=1;SAF=17;SAP=39.9253;SAR=0;SRF=42;SRP=94.2121;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:24:13,11:13:487:11:371:-26.4851,0,-36.9483 0/0:12:12,0:12:454:0:0:0,-3.61236,-35.6629 0/1:23:17,6:17:649:6:178:-9.38476,0,-51.8226 dDocent_Contig_15526 8 . A G 103.924 . AB=0.230769;ABP=19.3799;AC=2;AF=0.333333;AN=6;AO=6;CIGAR=1X1M1X;DP=37;DPB=37;DPRA=1.18182;EPP=16.0391;EPPR=70.3259;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=232;QR=1187;RO=31;RPL=0;RPP=16.0391;RPPR=70.3259;RPR=6;RUN=1;SAF=6;SAP=16.0391;SAR=0;SRF=31;SRP=70.3259;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|1:20:15,5:15:581:5:193:-11.7209,0,-46.6126 0|1:6:5,1:5:187:1:39:-2.09038,0,-15.3857 0|0:11:11,0:11:419:0:0:0,-3.31133,-38.0612 dDocent_Contig_15528 42 . G A 98.1392 . AB=0.208333;ABP=20.744;AC=1;AF=0.166667;AN=6;AO=5;CIGAR=1X;DP=47;DPB=47;DPRA=2.08696;EPP=13.8677;EPPR=94.2121;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=1.73472e-18;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=202;QR=1666;RO=42;RPL=0;RPP=13.8677;RPPR=94.2121;RPR=5;RUN=1;SAF=5;SAP=13.8677;SAR=0;SRF=42;SRP=94.2121;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:24:19,5:19:760:5:202:-11.3368,0,-61.4947 0/0:6:6,0:6:238:0:0:0,-1.80618,-21.7942 0/0:17:17,0:17:668:0:0:0,-5.11751,-60.4454 dDocent_Contig_15529 27 . T C 257.799 . AB=0.366667;ABP=7.64277;AC=2;AF=0.5;AN=4;AO=11;CIGAR=1X;DP=30;DPB=30;DPRA=0;EPP=26.8965;EPPR=44.2683;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=2;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=420;QR=766;RO=19;RPL=0;RPP=26.8965;RPPR=44.2683;RPR=11;RUN=1;SAF=11;SAP=26.8965;SAR=0;SRF=19;SRP=44.2683;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:18:10,8:10:406:8:314:-23.2057,0,-31.4819 ./.:.:.:.:.:.:.:. 0/1:12:9,3:9:360:3:106:-6.27315,0,-29.1474 dDocent_Contig_15530 8 . A G 282.679 . AB=0.3;ABP=16.9077;AC=3;AF=0.5;AN=6;AO=12;CIGAR=1X;DP=40;DPB=40;DPRA=0;EPP=29.068;EPPR=63.8115;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=462;QR=1061;RO=28;RPL=0;RPP=29.068;RPPR=63.8115;RPR=12;RUN=1;SAF=12;SAP=29.068;SAR=0;SRF=28;SRP=63.8115;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:9:8,1:8:310:1:39:-1.18729,0,-25.5544 0/1:21:19,2:19:712:2:72:-0.514284,0,-58.0819 0/1:10:1,9:1:39:9:351:-28.9415,0,-0.886264 dDocent_Contig_15531 53 . G A 2699.59 . AB=0.0952381;ABP=62.7775;AC=0;AF=0;AN=6;AO=4;CIGAR=1M1I1M1X2M1X;DP=124;DPB=124.667;DPRA=0;EPP=11.6962;EPPR=74.6689;GTI=0;LEN=1;MEANALT=2;MQM=60;MQMR=60;NS=3;NUMALT=2;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=153;QR=1253;RO=33;RPL=4;RPP=11.6962;RPPR=74.6689;RPR=0;RUN=1;SAF=4;SAP=11.6962;SAR=0;SRF=33;SRP=74.6689;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|0:42:13,4,25:13:492:4,25:153,1004:-78.8266,-70.1886,-109.308,0,-27.7729,-32.8021 0|0:71:19,0,52:19:727:0,52:0,2049:-163.235,-168.955,-228.606,0,-60.0367,-44.3831 0|0:11:1,0,10:1:34:0,10:0,383:-31.5056,-31.8066,-34.5608,0,-3.09788,-0.0875809 dDocent_Contig_15532 47 . G T 68.2322 . AB=0.166667;ABP=31.9633;AC=1;AF=0.166667;AN=6;AO=8;CIGAR=6M1X2M;DP=108;DPB=111.889;DPRA=0;EPP=20.3821;EPPR=184.065;GTI=0;LEN=1;MEANALT=2;MQM=60;MQMR=60;NS=3;NUMALT=3;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=313;QR=3709;RO=95;RPL=0;RPP=20.3821;RPPR=184.065;RPR=8;RUN=1;SAF=8;SAP=20.3821;SAR=0;SRF=95;SRP=209.3;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|0:60:56,0,1,3:56:2175:0,1,3:0,38,123:0,-16.8577,-195.551,-13.7486,-192.435,-192.134,-6.68314,-185.398,-182.281,-184.495 0|0:18:16,0,2,0:16:629:0,2,0:0,67,0:-0.943538,-5.76002,-57.5467,0,-52.1279,-51.5259,-5.76002,-57.5467,-52.1279,-57.5467 0|1:30:23,2,0,5:23:905:2,0,5:81,0,190:-8.6346,-8.87201,-82.7271,-15.5583,-83.3292,-90.0093,0,-67.7555,-74.4356,-72.9304 dDocent_Contig_15533 107 . N A 195.213 . AB=0;ABP=0;AC=4;AF=1;AN=4;AO=6;CIGAR=1X;DP=6;DPB=6;DPRA=0;EPP=16.0391;EPPR=0;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=0;NS=2;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=206;QR=0;RO=0;RPL=0;RPP=16.0391;RPPR=0;RPR=6;RUN=1;SAF=0;SAP=16.0391;SAR=6;SRF=0;SRP=0;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL ./.:.:.:.:.:.:.:. 1/1:3:0,3:0:0:3:101:-9.4236,-0.90309,0 1/1:3:0,3:0:0:3:105:-9.79616,-0.90309,0 dDocent_Contig_15536 68 . T A 345.723 . AB=0.172043;ABP=89.8925;AC=4;AF=0.666666;AN=6;AO=16;CIGAR=1M3I10M1X4M;DP=93;DPB=101.75;DPRA=0;EPP=37.7539;EPPR=81.1833;GTI=0;LEN=1;MEANALT=7.66667;MQM=60;MQMR=60;NS=3;NUMALT=5;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=556;QR=1311;RO=36;RPL=16;RPP=37.7539;RPPR=81.1833;RPR=0;RUN=1;SAF=16;SAP=37.7539;SAR=0;SRF=36;SRP=81.1833;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|1:63:30,0,8,7,2,6:30:1089:0,8,7,2,6:0,278,243,76,218:-13.5752,-22.6061,-111.543,0,-88.9404,-86.5322,-2.84843,-91.7882,-69.186,-89.6809,-16.3702,-105.309,-82.7062,-85.554,-104.706,-4.79832,-93.7394,-71.137,-73.9847,-87.5051,-91.9332 1|1:3:0,0,1,1,0,0:0:0:0,1,1,0,0:0,34,35,0,0:-5.63567,-5.63567,-5.63567,-2.87269,-2.87269,-2.57166,-2.77796,-2.77796,0,-2.47693,-5.63567,-5.63567,-2.87269,-2.77796,-5.63567,-5.63567,-5.63567,-2.87269,-2.77796,-5.63567,-5.63567 0|1:27:6,2,2,8,3,3:6:222:2,2,8,3,3:41,70,278,117,117:-20.8032,-19.5364,-37.1013,-16.9124,-32.0083,-34.4809,0,-15.1044,-12.4786,-15.7667,-12.9829,-28.0811,-25.4591,-8.54854,-30.2526,-12.9829,-28.0811,-25.4591,-8.54854,-21.5308,-30.2526 dDocent_Contig_15537 52 . T C 60.4584 . AB=0.210526;ABP=16.8392;AC=1;AF=0.166667;AN=6;AO=4;CIGAR=1M1D3M1X;DP=46;DPB=46.1667;DPRA=1.40741;EPP=11.6962;EPPR=92.0407;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=59.561;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=147;QR=1481;RO=41;RPL=4;RPP=11.6962;RPPR=92.0407;RPR=0;RUN=1;SAF=4;SAP=11.6962;SAR=0;SRF=41;SRP=92.0407;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|0:20:20,0:20:717:0:0:0,-6.0206,-64.8463 0|0:7:6,0:6:220:0:0:0,-1.80618,-19.7816 0|1:19:15,4:15:544:4:147:-7.86973,0,-43.5756 dDocent_Contig_15538 41 . C T 57.0886 . AB=0.16;ABP=28.1125;AC=1;AF=0.166667;AN=6;AO=4;CIGAR=1X;DP=72;DPB=72;DPRA=1.06383;EPP=11.6962;EPPR=150.67;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=0.985294;PAO=0;PQA=0;PQR=0;PRO=0;QA=163;QR=2725;RO=68;RPL=0;RPP=11.6962;RPPR=150.67;RPR=4;RUN=1;SAF=4;SAP=11.6962;SAR=0;SRF=68;SRP=150.67;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:43:43,0:43:1717:0:0:0,-12.9443,-154.746 0/0:4:4,0:4:160:0:0:0,-1.20412,-14.7829 0/1:25:21,4:21:848:4:163:-7.53268,0,-69.1055 dDocent_Contig_15539 15 . A G 32.5648 . AB=0.16;ABP=28.1125;AC=1;AF=0.166667;AN=6;AO=18;CIGAR=1X;DP=212;DPB=212;DPRA=0;EPP=15.074;EPPR=138.447;GTI=0;LEN=1;MEANALT=1;MQM=56.3333;MQMR=52.9897;NS=3;NUMALT=1;ODDS=1.38778e-17;PAIRED=0.777778;PAIREDR=0.195876;PAO=0;PQA=0;PQR=0;PRO=0;QA=699;QR=7062;RO=194;RPL=0;RPP=42.0968;RPPR=424.276;RPR=18;RUN=1;SAF=14;SAP=15.074;SAR=4;SRF=42;SRP=138.447;SRR=152;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:107:99,8:99:3585:8:318:0,-3.22388,-290.738 0/1:25:21,4:21:757:4:142:-5.08013,0,-60.8103 0/0:80:74,6:74:2720:6:239:0,-2.19797,-220.188 dDocent_Contig_15540 81 . T A 82.2728 . AB=0.444444;ABP=3.25157;AC=1;AF=0.166667;AN=6;AO=4;CIGAR=1X;DP=35;DPB=35;DPRA=0.692308;EPP=11.6962;EPPR=70.3259;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=138;QR=1087;RO=31;RPL=4;RPP=11.6962;RPPR=70.3259;RPR=0;RUN=1;SAF=4;SAP=11.6962;SAR=0;SRF=31;SRP=70.3259;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:8:8,0:8:279:0:0:0,-2.40824,-25.448 0/0:18:18,0:18:636:0:0:0,-5.41854,-57.5685 0/1:9:5,4:5:172:4:138:-10.0512,0,-13.1091 dDocent_Contig_15541 18 . A G 132.134 . AB=0.25;ABP=13.8677;AC=2;AF=0.333334;AN=6;AO=6;CIGAR=1X2M1X2M;DP=43;DPB=43;DPRA=0;EPP=16.0391;EPPR=70.3259;GTI=0;LEN=1;MEANALT=1.66667;MQM=60;MQMR=60;NS=3;NUMALT=2;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=235;QR=1223;RO=31;RPL=0;RPP=16.0391;RPPR=70.3259;RPR=6;RUN=1;SAF=6;SAP=16.0391;SAR=0;SRF=31;SRP=70.3259;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|0:23:22,0,1:22:864:0,1:0,39:0,-6.62266,-77.6838,-3.02713,-74.478,-74.177 0|1:10:4,3,3:4:159:3,3:101,117:-8.43965,-1.4891,-13.6814,0,-4.97049,-12.2227 0|1:10:5,3,2:5:200:3,2:119,79:-8.29188,0,-15.5756,-3.29673,-9.97919,-19.1719 dDocent_Contig_15542 9 . A G 37.363 . AB=0.166667;ABP=26.1727;AC=2;AF=0.5;AN=4;AO=4;CIGAR=1X;DP=24;DPB=24;DPRA=0;EPP=11.6962;EPPR=46.4397;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=2;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=154;QR=761;RO=20;RPL=0;RPP=11.6962;RPPR=46.4397;RPR=4;RUN=1;SAF=4;SAP=11.6962;SAR=0;SRF=20;SRP=46.4397;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:15:13,2:13:501:2:76:-2.69922,0,-40.923 ./.:.:.:.:.:.:.:. 0/1:9:7,2:7:260:2:78:-4.6942,0,-21.0454 dDocent_Contig_15543 8 . A G 128.025 . AB=0.272727;ABP=12.8806;AC=1;AF=0.166667;AN=6;AO=11;CIGAR=1X;DP=112;DPB=112;DPRA=0;EPP=26.8965;EPPR=222.329;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=0;PAIREDR=0.960396;PAO=0;PQA=0;PQR=0;PRO=0;QA=423;QR=3841;RO=101;RPL=0;RPP=26.8965;RPPR=222.329;RPR=11;RUN=1;SAF=11;SAP=26.8965;SAR=0;SRF=101;SRP=222.329;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:55:52,3:52:1981:3:117:0,-5.64627,-167.623 0/1:22:16,6:16:610:6:232:-14.6264,0,-48.6159 0/0:35:33,2:33:1250:2:74:0,-3.51062,-105.766 dDocent_Contig_15544 21 . C A 201.853 . AB=0.160494;ABP=84.1054;AC=2;AF=0.333333;AN=6;AO=13;CIGAR=1X;DP=117;DPB=117;DPRA=1.125;EPP=31.2394;EPPR=228.843;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=42.7692;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=0.5;PAO=0;PQA=0;PQR=0;PRO=0;QA=526;QR=4115;RO=104;RPL=0;RPP=31.2394;RPPR=228.843;RPR=13;RUN=1;SAF=13;SAP=31.2394;SAR=0;SRF=104;SRP=228.843;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:41:33,8:33:1295:8:323:-17.0964,0,-68.4872 0/1:40:35,5:35:1394:5:203:-6.61186,0,-83.3145 0/0:36:36,0:36:1426:0:0:0,-10.8371,-109.104 dDocent_Contig_15545 10 . G A 1354.23 . AB=0.0526316;ABP=69.0688;AC=0;AF=0;AN=6;AO=2;CIGAR=2X;DP=98;DPB=98;DPRA=0;EPP=7.35324;EPPR=72.4974;GTI=0;LEN=1;MEANALT=3;MQM=60;MQMR=45.9062;NS=3;NUMALT=3;ODDS=0;PAIRED=1;PAIREDR=0.96875;PAO=0;PQA=0;PQR=0;PRO=0;QA=78;QR=1222;RO=32;RPL=0;RPP=7.35324;RPPR=72.4974;RPR=2;RUN=1;SAF=2;SAP=7.35324;SAR=0;SRF=32;SRP=72.4974;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|0:38:4,2,31,1:4:157:2,31,1:78,931,39:-66.5417,-61.3278,-71.7811,0,-4.59764,-1.68856,-64.5368,-69.1743,-7.80992,-75.2906 0|0:24:14,0,10,0:14:511:0,10,0:0,338,0:-22.2412,-26.4556,-60.6383,0,-34.4986,-31.4883,-26.4556,-60.6383,-34.4986,-60.6383 0|0:36:14,0,19,3:14:554:0,19,3:0,703,117:-51.7858,-56.0002,-96.3259,0,-40.3004,-34.5808,-46.3787,-86.7056,-30.6764,-85.8025 dDocent_Contig_15546 8 . A G 2339.28 . AB=0.753623;ABP=41.5618;AC=4;AF=0.666667;AN=6;AO=76;CIGAR=1X;DP=94;DPB=94;DPRA=0;EPP=168.042;EPPR=42.0968;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=2902;QR=685;RO=18;RPL=0;RPP=168.042;RPPR=42.0968;RPR=76;RUN=1;SAF=76;SAP=168.042;SAR=0;SRF=18;SRP=42.0968;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 1/1:25:1,24:1:39:24:922:-79.4008,-3.62919,0 0/1:28:7,21:7:270:21:811:-64.8855,0,-16.2368 0/1:41:10,31:10:376:31:1169:-93.1647,0,-21.8496 dDocent_Contig_15547 32 . G A 1188.97 . AB=0.325301;ABP=25.0128;AC=2;AF=0.333333;AN=6;AO=27;CIGAR=1X2M1X1M1X;DP=83;DPB=88.1667;DPRA=0;EPP=61.6401;EPPR=57.2971;GTI=0;LEN=1;MEANALT=2;MQM=60;MQMR=60;NS=3;NUMALT=2;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=1040;QR=979;RO=25;RPL=0;RPP=61.6401;RPPR=57.2971;RPR=27;RUN=1;SAF=27;SAP=61.6401;SAR=0;SRF=25;SRP=57.2971;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 1|0:43:8,18,17:8:309:18,17:706,659:-84.4114,-28.7615,-48.7172,-32.6871,0,-52.9424 0|1:11:5,3,3:5:202:3,3:119,113:-8.30045,0,-15.7673,-0.556016,-7.42102,-16.3109 0|0:29:12,6,11:12:468:6,11:215,429:-31.6692,-17.7616,-54.4218,0,-20.9668,-35.1761 dDocent_Contig_15549 22 . G A 378.107 . AB=0.246575;ABP=43.7328;AC=3;AF=0.5;AN=6;AO=18;CIGAR=1X;DP=73;DPB=73;DPRA=0;EPP=42.0968;EPPR=122.441;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=713;QR=2218;RO=55;RPL=0;RPP=42.0968;RPPR=122.441;RPR=18;RUN=1;SAF=18;SAP=42.0968;SAR=0;SRF=55;SRP=122.441;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:42:32,10:32:1292:10:401:-23.8057,0,-103.902 0/1:4:3,1:3:121:1:38:-2.59315,0,-10.0761 0/1:27:20,7:20:805:7:274:-16.8993,0,-64.6375 dDocent_Contig_15550 8 . A T 106.063 . AB=0.194444;ABP=32.2045;AC=2;AF=0.5;AN=4;AO=7;CIGAR=1X;DP=36;DPB=36;DPRA=0;EPP=18.2106;EPPR=65.983;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=53.5172;NS=2;NUMALT=1;ODDS=0;PAIRED=0.571429;PAIREDR=0.758621;PAO=0;PQA=0;PQR=0;PRO=0;QA=271;QR=1119;RO=29;RPL=0;RPP=18.2106;RPPR=65.983;RPR=7;RUN=1;SAF=7;SAP=18.2106;SAR=0;SRF=29;SRP=65.983;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:17:13,4:13:501:4:156:-9.29978,0,-36.7725 ./.:.:.:.:.:.:.:. 0/1:19:16,3:16:618:3:115:-5.00532,0,-49.8234 dDocent_Contig_15551 72 . A C 327.364 . AB=0.6;ABP=4.74748;AC=1;AF=0.25;AN=4;AO=12;CIGAR=1X1M1X;DP=31;DPB=31;DPRA=1.81818;EPP=29.068;EPPR=44.2683;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=2;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=449;QR=691;RO=19;RPL=12;RPP=29.068;RPPR=44.2683;RPR=0;RUN=1;SAF=12;SAP=29.068;SAR=0;SRF=19;SRP=44.2683;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|0:11:11,0:11:407:0:0:0,-3.31133,-36.9764 .:.:.:.:.:.:.:. 0|1:20:8,12:8:284:12:449:-34.7364,0,-19.8798 dDocent_Contig_15552 132 . C T 140.588 . AB=0.266667;ABP=17.1973;AC=1;AF=0.25;AN=4;AO=8;CIGAR=1X1M1X;DP=50;DPB=50;DPRA=1.5;EPP=20.3821;EPPR=92.0407;GTI=0;LEN=1;MEANALT=2;MQM=60;MQMR=60;NS=2;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=275;QR=1364;RO=41;RPL=0;RPP=20.3821;RPPR=92.0407;RPR=8;RUN=1;SAF=0;SAP=20.3821;SAR=8;SRF=0;SRP=92.0407;SRR=41;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|0:20:20,0:20:672:0:0:0,-6.0206,-60.7972 .:.:.:.:.:.:.:. 0|1:30:21,8:21:692:8:275:-16.0588,0,-53.5702 dDocent_Contig_15553 30 . T C 32.4682 . AB=0.222222;ABP=9.04217;AC=1;AF=0.166667;AN=6;AO=3;CIGAR=1X;DP=26;DPB=26;DPRA=2.1;EPP=9.52472;EPPR=52.9542;GTI=0;LEN=1;MEANALT=1;MQM=46.3333;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=0;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=123;QR=910;RO=23;RPL=0;RPP=9.52472;RPPR=52.9542;RPR=3;RUN=1;SAF=3;SAP=9.52472;SAR=0;SRF=23;SRP=52.9542;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:12:11,1:11:433:1:41:0,-1.71506,-37.4223 0/0:5:5,0:5:196:0:0:0,-1.50515,-18.0132 0/1:9:7,2:7:281:2:82:-5.07041,0,-22.9511 dDocent_Contig_15554 17 . T C 66.435 . AB=0.178571;ABP=28.1373;AC=2;AF=0.333333;AN=6;AO=5;CIGAR=1X;DP=47;DPB=47;DPRA=0.736842;EPP=6.91895;EPPR=94.2121;GTI=0;LEN=1;MEANALT=1;MQM=59.8;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=0;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=198;QR=1686;RO=42;RPL=0;RPP=13.8677;RPPR=94.2121;RPR=5;RUN=1;SAF=4;SAP=6.91895;SAR=1;SRF=42;SRP=94.2121;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:16:13,3:13:527:3:117:-6.09177,0,-42.9601 0/1:12:10,2:10:398:2:81:-4.07337,0,-32.5661 0/0:19:19,0:19:761:0:0:0,-5.71957,-68.8105 dDocent_Contig_15555 30 . T C 898.88 . AB=0.447761;ABP=4.59839;AC=4;AF=0.666667;AN=6;AO=31;CIGAR=1X;DP=68;DPB=68;DPRA=0;EPP=70.3259;EPPR=83.3548;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=1250;QR=1456;RO=37;RPL=0;RPP=70.3259;RPPR=83.3548;RPR=31;RUN=1;SAF=31;SAP=70.3259;SAR=0;SRF=37;SRP=83.3548;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:46:27,19:27:1073:19:760:-54.8715,0,-83.0131 1/1:1:0,1:0:0:1:41:-4.09457,-0.30103,0 0/1:21:10,11:10:383:11:449:-34.444,0,-28.4938 dDocent_Contig_15557 38 . G A 290.611 . AB=0.26;ABP=28.0257;AC=2;AF=0.333333;AN=6;AO=14;CIGAR=1X;DP=68;DPB=68;DPRA=0;EPP=33.4109;EPPR=120.27;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=561;QR=2119;RO=54;RPL=0;RPP=33.4109;RPPR=120.27;RPR=14;RUN=1;SAF=14;SAP=33.4109;SAR=0;SRF=54;SRP=120.27;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:44:35,9:35:1397:9:362:-19.6987,0,-112.735 0/1:6:2,4:2:79:4:159:-12.8853,0,-5.69106 0/0:18:17,1:17:643:1:40:0,-1.42286,-54.1889 dDocent_Contig_15559 50 . T C 340.677 . AB=0.388889;ABP=6.8707;AC=3;AF=0.5;AN=6;AO=14;CIGAR=1X;DP=36;DPB=36;DPRA=0;EPP=33.4109;EPPR=50.7827;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=545;QR=835;RO=22;RPL=14;RPP=33.4109;RPPR=50.7827;RPR=0;RUN=1;SAF=14;SAP=33.4109;SAR=0;SRF=22;SRP=50.7827;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:22:13,9:13:481:9:358:-25.9609,0,-36.9988 0/1:6:5,1:5:194:1:36:-1.79209,0,-16.0251 0/1:8:4,4:4:160:4:151:-11.5481,0,-12.3752 dDocent_Contig_15560 13 . C A 608.985 . AB=0.689655;ABP=12.0706;AC=2;AF=0.333333;AN=6;AO=20;CIGAR=1X;DP=37;DPB=37;DPRA=1.8125;EPP=46.4397;EPPR=39.9253;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=803;QR=679;RO=17;RPL=0;RPP=46.4397;RPPR=39.9253;RPR=20;RUN=1;SAF=20;SAP=46.4397;SAR=0;SRF=17;SRP=39.9253;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:15:2,13:2:68:13:530:-43.5312,0,-1.94096 0/1:14:7,7:7:286:7:273:-20.7203,0,-21.9004 0/0:8:8,0:8:325:0:0:0,-2.40824,-29.6194 dDocent_Contig_15561 63 . A T 196.036 . AB=0.294118;ABP=15.5282;AC=3;AF=0.5;AN=6;AO=10;CIGAR=1X;DP=34;DPB=34;DPRA=0;EPP=24.725;EPPR=55.1256;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=380;QR=934;RO=24;RPL=10;RPP=24.725;RPPR=55.1256;RPR=0;RUN=1;SAF=10;SAP=24.725;SAR=0;SRF=24;SRP=55.1256;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:5:4,1:4:157:1:40:-2.49053,0,-13.0025 0/1:15:10,5:10:390:5:199:-13.772,0,-30.9428 0/1:14:10,4:10:387:4:141:-8.81956,0,-30.9731 dDocent_Contig_15562 39 . G T 146.942 . AB=0.144444;ABP=101.836;AC=3;AF=0.5;AN=6;AO=13;CIGAR=1X;DP=90;DPB=90;DPRA=0;EPP=31.2394;EPPR=170.214;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=513;QR=3046;RO=77;RPL=0;RPP=31.2394;RPPR=170.214;RPR=13;RUN=1;SAF=13;SAP=31.2394;SAR=0;SRF=77;SRP=170.214;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:42:36,6:36:1425:6:232:-8.60059,0,-115.86 0/1:37:32,5:32:1261:5:200:-7.24143,0,-102.617 0/1:11:9,2:9:360:2:81:-4.3744,0,-29.4501 dDocent_Contig_15563 12 . C T 1639.7 . AB=0.135802;ABP=96.33;AC=0;AF=0;AN=6;AO=11;CIGAR=1X3M1X;DP=233;DPB=233;DPRA=0;EPP=26.8965;EPPR=339.589;GTI=0;LEN=1;MEANALT=4;MQM=60;MQMR=60;NS=3;NUMALT=2;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=429;QR=6064;RO=155;RPL=0;RPP=26.8965;RPPR=339.589;RPR=11;RUN=1;SAF=11;SAP=26.8965;SAR=0;SRF=155;SRP=339.589;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|0:95:69,0,26:69:2702:0,26:0,1053:-66.462,-87.233,-309.393,0,-222.561,-214.734 0|0:81:48,11,20:48:1893:11,20:429,800:-51.4668,-30.6524,-183.094,0,-120.505,-149.748 0|0:57:38,0,19:38:1469:0,19:0,760:-51.5639,-63.003,-183.633,0,-121.025,-115.306 dDocent_Contig_15564 111 . T C 189.203 . AB=0.235294;ABP=34.0496;AC=2;AF=0.333333;AN=6;AO=13;CIGAR=1X;DP=74;DPB=74;DPRA=0;EPP=31.2394;EPPR=133.299;GTI=0;LEN=1;MEANALT=1.33333;MQM=59.9231;MQMR=54.3667;NS=3;NUMALT=1;ODDS=3.46945e-18;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=441;QR=2073;RO=60;RPL=0;RPP=31.2394;RPPR=133.299;RPR=13;RUN=1;SAF=0;SAP=31.2394;SAR=13;SRF=0;SRP=133.299;SRR=60;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:33:26,6:26:893:6:210:-9.25964,0,-70.3961 0/1:18:12,6:12:415:6:203:-13.1836,0,-29.4476 0/0:23:22,1:22:765:1:28:0,-4.12403,-64.6534 dDocent_Contig_15565 13 . T C 199.662 . AB=0.129771;ABP=158.975;AC=2;AF=0.333333;AN=6;AO=19;CIGAR=1X;DP=160;DPB=160;DPRA=0;EPP=44.2683;EPPR=309.188;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=771;QR=5552;RO=141;RPL=0;RPP=44.2683;RPPR=309.188;RPR=19;RUN=1;SAF=19;SAP=44.2683;SAR=0;SRF=141;SRP=309.188;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:87:78,9:78:3093:9:368:-7.29574,0,-252.247 0/1:44:36,8:36:1407:8:323:-16.1933,0,-113.649 0/0:29:27,2:27:1052:2:80:0,-1.13829,-87.3758 dDocent_Contig_15566 55 . C T 545.95 . AB=0.44;ABP=4.57376;AC=3;AF=0.5;AN=6;AO=22;CIGAR=1X;DP=50;DPB=50;DPRA=0;EPP=50.7827;EPPR=63.8115;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=823;QR=1120;RO=28;RPL=22;RPP=50.7827;RPPR=63.8115;RPR=0;RUN=1;SAF=22;SAP=50.7827;SAR=0;SRF=28;SRP=63.8115;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:37:20,17:20:800:17:631:-45.9693,0,-61.1814 0/1:2:1,1:1:40:1:41:-3.49251,0,-3.39362 0/1:11:7,4:7:280:4:151:-10.6457,0,-22.2604 dDocent_Contig_15567 11 . C A 4981.68 . AB=0.0521583;ABP=971.596;AC=3;AF=0.5;AN=6;AO=29;CIGAR=2M1X;DP=556;DPB=556;DPRA=0;EPP=65.983;EPPR=667.481;GTI=0;LEN=1;MEANALT=4.66667;MQM=60;MQMR=59.2353;NS=3;NUMALT=3;ODDS=0;PAIRED=1;PAIREDR=0.970588;PAO=0;PQA=0;PQR=0;PRO=0;QA=1168;QR=11905;RO=306;RPL=0;RPP=65.983;RPPR=667.481;RPR=29;RUN=1;SAF=29;SAP=65.983;SAR=0;SRF=306;SRP=667.481;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|1:255:134,82,17,12:134:5245:82,17,12:3220,649,485:-220.536,0,-406.55,-211.679,-382.039,-637.787,-220.887,-391.248,-602.918,-648.503 0|1:103:53,44,0,5:53:2040:44,0,5:1723,0,203:-124.305,0,-153.972,-140.26,-167.217,-307.493,-123.515,-150.473,-290.75,-289.245 0|1:198:119,61,5,12:119:4620:61,5,12:2386,191,480:-158.85,0,-358.752,-179.006,-361.447,-554.62,-155.132,-337.575,-516.586,-528.641 dDocent_Contig_15568 15 . T G 56.803 . AB=0.272727;ABP=7.94546;AC=1;AF=0.166667;AN=6;AO=5;CIGAR=1X;DP=54;DPB=54;DPRA=1.75;EPP=13.8677;EPPR=109.412;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=196;QR=1925;RO=49;RPL=0;RPP=13.8677;RPPR=109.412;RPR=5;RUN=1;SAF=5;SAP=13.8677;SAR=0;SRF=49;SRP=109.412;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:31:29,2:29:1152:2:80:0,-1.74014,-96.3655 0/0:12:12,0:12:461:0:0:0,-3.61236,-41.8347 0/1:11:8,3:8:312:3:116:-7.50418,0,-25.1276 dDocent_Contig_15570 18 . C T 45.2343 . AB=0.176471;ABP=18.4661;AC=1;AF=0.166667;AN=6;AO=3;CIGAR=1X;DP=40;DPB=40;DPRA=1.47826;EPP=9.52472;EPPR=83.3548;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=1.73472e-18;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=123;QR=1494;RO=37;RPL=0;RPP=9.52472;RPPR=83.3548;RPR=3;RUN=1;SAF=3;SAP=9.52472;SAR=0;SRF=37;SRP=83.3548;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:18:18,0:18:727:0:0:0,-5.41854,-65.7558 0/0:5:5,0:5:204:0:0:0,-1.50515,-18.744 0/1:17:14,3:14:563:3:123:-6.34728,0,-45.8926 dDocent_Contig_15571 63 . G T 98.4513 . AB=0.0925926;ABP=80.8616;AC=1;AF=0.166667;AN=6;AO=5;CIGAR=5M1X5M;DP=92;DPB=83.8182;DPRA=0;EPP=13.8677;EPPR=170.214;GTI=0;LEN=1;MEANALT=1.5;MQM=60;MQMR=60;NS=3;NUMALT=2;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=177;QR=2799;RO=77;RPL=5;RPP=13.8677;RPPR=170.214;RPR=0;RUN=1;SAF=5;SAP=13.8677;SAR=0;SRF=77;SRP=170.214;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|1:33:29,0,4:29:1057:0,4:0,140:-3.00722,-11.7371,-98.0848,0,-86.6992,-85.4951 0|0:21:15,5,1:15:553:5,1:164,37:-8.69935,0,-43.714,-10.1808,-42.192,-55.1306 0|0:38:33,5,0:33:1189:5,0:164,0:-3.64426,0,-95.868,-13.5782,-97.3732,-110.619 dDocent_Contig_15573 25 . T G 45.6369 . AB=0.5;ABP=3.0103;AC=1;AF=0.166667;AN=6;AO=2;CIGAR=1X;DP=28;DPB=28;DPRA=0.333333;EPP=7.35324;EPPR=59.4686;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=80;QR=1030;RO=26;RPL=0;RPP=7.35324;RPPR=59.4686;RPR=2;RUN=1;SAF=2;SAP=7.35324;SAR=0;SRF=26;SRP=59.4686;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:15:15,0:15:599:0:0:0,-4.51545,-54.2486 0/1:4:2,2:2:66:2:80:-6.38745,0,-5.06059 0/0:9:9,0:9:365:0:0:0,-2.70927,-33.2149 dDocent_Contig_15574 108 . A C 216.91 . AB=0.257576;ABP=36.701;AC=3;AF=0.5;AN=6;AO=17;CIGAR=1X;DP=66;DPB=66;DPRA=0;EPP=39.9253;EPPR=109.412;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=495;QR=1521;RO=49;RPL=0;RPP=39.9253;RPPR=109.412;RPR=17;RUN=1;SAF=0;SAP=39.9253;SAR=17;SRF=0;SRP=109.412;SRR=49;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:29:23,6:23:740:6:190:-8.68225,0,-58.1732 0/1:27:17,10:17:482:10:271:-16.5281,0,-35.5255 0/1:10:9,1:9:299:1:34:-0.388611,0,-24.224 dDocent_Contig_15575 12 . T C 50.9295 . AB=0.214286;ABP=12.937;AC=1;AF=0.166667;AN=6;AO=3;CIGAR=1X;DP=40;DPB=40;DPRA=1.07692;EPP=9.52472;EPPR=83.3548;GTI=0;LEN=1;MEANALT=1;MQM=47;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=122;QR=1447;RO=37;RPL=0;RPP=9.52472;RPPR=83.3548;RPR=3;RUN=1;SAF=3;SAP=9.52472;SAR=0;SRF=37;SRP=83.3548;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:16:16,0:16:631:0:0:0,-4.81648,-57.1209 0/0:10:10,0:10:376:0:0:0,-3.0103,-34.1828 0/1:14:11,3:11:440:3:122:-6.91685,0,-35.7405 dDocent_Contig_15576 146 . A G 243.618 . AB=0.230769;ABP=19.3799;AC=3;AF=0.5;AN=6;AO=9;CIGAR=1X;DP=38;DPB=38;DPRA=1.61111;EPP=22.5536;EPPR=65.983;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=366;QR=1126;RO=29;RPL=0;RPP=22.5536;RPPR=65.983;RPR=9;RUN=1;SAF=0;SAP=22.5536;SAR=9;SRF=0;SRP=65.983;SRR=29;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 1/1:3:0,3:0:0:3:122:-11.3725,-0.90309,0 0/0:9:9,0:9:352:0:0:0,-2.70927,-32.0379 0/1:26:20,6:20:774:6:244:-14.512,0,-62.1511 dDocent_Contig_15577 20 . T A 50.0452 . AB=0;ABP=0;AC=2;AF=0.333333;AN=6;AO=3;CIGAR=1X1M1X3M1X;DP=45;DPB=45;DPRA=0.714286;EPP=9.52472;EPPR=79.0118;GTI=0;LEN=1;MEANALT=3;MQM=18;MQMR=60;NS=3;NUMALT=2;ODDS=0;PAIRED=0;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=121;QR=1361;RO=35;RPL=0;RPP=9.52472;RPPR=79.0118;RPR=3;RUN=1;SAF=3;SAP=9.52472;SAR=0;SRF=35;SRP=79.0118;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|0:33:28,0,3:28:1088:0,3:0,113:-0.878801,-9.30764,-98.7466,0,-89.4885,-88.5854 1|1:5:0,3,0:0:0:3,0:121,0:-4.81723,-0.90309,0,-4.81723,-0.90309,-4.81723 0|0:7:7,0,0:7:273:0,0:0,0:0,-2.10721,-24.9367,-2.10721,-24.9367,-24.9367 dDocent_Contig_15578 27 . C T 2387.49 . AB=0.807018;ABP=49.6779;AC=4;AF=0.666667;AN=6;AO=73;CIGAR=1X;DP=85;DPB=85;DPRA=0;EPP=161.528;EPPR=29.068;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=0.109589;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=2917;QR=491;RO=12;RPL=0;RPP=161.528;RPPR=29.068;RPR=73;RUN=1;SAF=73;SAP=161.528;SAR=0;SRF=12;SRP=29.068;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:33:6,27:6:246:27:1071:-86.7433,0,-12.5861 1/1:28:1,27:1:40:27:1082:-93.6726,-4.43316,0 0/1:24:5,19:5:205:19:764:-61.856,0,-11.6103 dDocent_Contig_15579 13 . G T 156.141 . AB=0.28;ABP=13.5202;AC=1;AF=0.166667;AN=6;AO=7;CIGAR=1X3M1X;DP=60;DPB=60;DPRA=1.42857;EPP=5.80219;EPPR=115.927;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=0.571429;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=270;QR=2015;RO=52;RPL=0;RPP=18.2106;RPPR=115.927;RPR=7;RUN=1;SAF=5;SAP=5.80219;SAR=2;SRF=52;SRP=115.927;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|1:25:18,7:18:695:7:270:-17.1369,0,-55.353 0|0:11:10,0:10:378:0:0:0,-3.0103,-33.9682 0|0:24:24,0:24:942:0:0:0,-7.22472,-85.0912 dDocent_Contig_15580 144 . C T 43.3881 . AB=0.192308;ABP=24.391;AC=3;AF=0.5;AN=6;AO=5;CIGAR=1X;DP=26;DPB=26;DPRA=0;EPP=13.8677;EPPR=48.6112;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=0.6;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=183;QR=844;RO=21;RPL=0;RPP=13.8677;RPPR=48.6112;RPR=5;RUN=1;SAF=0;SAP=13.8677;SAR=5;SRF=0;SRP=48.6112;SRR=21;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:10:8,2:8:325:2:80:-4.58149,0,-26.6093 0/1:3:2,1:2:79:1:40:-3.09259,0,-6.59415 0/1:13:11,2:11:440:2:63:-2.06977,0,-36.0422 dDocent_Contig_15581 12 . T C 1103.34 . AB=0.259459;ABP=95.9845;AC=3;AF=0.5;AN=6;AO=48;CIGAR=1X;DP=185;DPB=185;DPRA=0;EPP=107.241;EPPR=300.502;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=1895;QR=5429;RO=137;RPL=0;RPP=107.241;RPPR=300.502;RPR=48;RUN=1;SAF=48;SAP=107.241;SAR=0;SRF=137;SRP=300.502;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:136:110,26:110:4384:26:1037:-52.6802,0,-353.565 0/1:6:3,3:3:121:3:121:-9.47402,0,-9.47402 0/1:43:24,19:24:924:19:737:-53.7026,0,-70.5164 dDocent_Contig_15583 12 . T C 610.241 . AB=0.0909091;ABP=146.92;AC=2;AF=0.333333;AN=6;AO=9;CIGAR=2X3M1X;DP=105;DPB=105;DPRA=8.25;EPP=22.5536;EPPR=135.47;GTI=0;LEN=1;MEANALT=4.5;MQM=24;MQMR=60;NS=3;NUMALT=3;ODDS=0;PAIRED=0;PAIREDR=0.95082;PAO=0;PQA=0;PQR=0;PRO=0;QA=364;QR=2403;RO=61;RPL=0;RPP=22.5536;RPPR=135.47;RPR=9;RUN=1;SAF=9;SAP=22.5536;SAR=0;SRF=61;SRP=135.47;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|1:68:44,15,3,5:44:1724:15,3,5:583,121,194:-34.6833,0,-137.284,-42.3974,-136.258,-183.252,-31.9859,-125.861,-168.218,-172.255 0|0:6:6,0,0,0:6:240:0,0,0:0,0,0:0,-1.80618,-21.9751,-1.80618,-21.9751,-21.9751,-1.80618,-21.9751,-21.9751,-21.9751 0|1:31:11,10,6,2:11:439:10,6,2:402,243,82:-29.8636,0,-33.1949,-22.122,-25.1493,-56.4703,-26.4005,-29.4311,-51.5075,-61.974 dDocent_Contig_15585 31 . T C 72.8141 . AB=0.127273;ABP=69.3784;AC=1;AF=0.166667;AN=6;AO=9;CIGAR=1X;DP=176;DPB=176;DPRA=2.08824;EPP=22.5536;EPPR=365.646;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=59.7485;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=0.760479;PAO=0;PQA=0;PQR=0;PRO=0;QA=363;QR=6631;RO=167;RPL=0;RPP=22.5536;RPPR=365.646;RPR=9;RUN=1;SAF=9;SAP=22.5536;SAR=0;SRF=167;SRP=365.646;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:87:85,2:85:3351:2:82:0,-18.4099,-293.818 0/0:34:34,0:34:1349:0:0:0,-10.235,-121.664 0/1:55:48,7:48:1931:7:281:-9.10532,0,-157.422 dDocent_Contig_15586 17 . T A 820.2 . AB=0.4;ABP=9.52472;AC=3;AF=0.5;AN=6;AO=30;CIGAR=8M1X9M;DP=75;DPB=73.3333;DPRA=0;EPP=68.1545;EPPR=66.922;GTI=0;LEN=1;MEANALT=2.66667;MQM=60;MQMR=60;NS=3;NUMALT=2;ODDS=6.93889e-18;PAIRED=1;PAIREDR=0.945946;PAO=0;PQA=0;PQR=0;PRO=0;QA=1193;QR=1443;RO=37;RPL=0;RPP=68.1545;RPPR=83.3548;RPR=30;RUN=1;SAF=30;SAP=68.1545;SAR=0;SRF=35;SRP=66.922;SRR=2;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|1:44:22,1,17:22:859:1,17:40,676:-49.0595,-52.5748,-122.888,0,-67.5286,-65.5187 0|1:10:4,3,3:4:160:3,3:121,122:-8.87194,-0.717736,-12.9912,0,-3.82823,-12.2881 0|1:21:11,0,10:11:424:0,10:0,395:-29.5846,-32.8959,-67.7056,0,-35.1997,-32.1894 dDocent_Contig_15587 24 . A T 177.716 . AB=0.235294;ABP=23.7032;AC=1;AF=0.166667;AN=6;AO=8;CIGAR=1X;DP=49;DPB=49;DPRA=4.53333;EPP=20.3821;EPPR=92.0407;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=324;QR=1592;RO=41;RPL=0;RPP=20.3821;RPPR=92.0407;RPR=8;RUN=1;SAF=8;SAP=20.3821;SAR=0;SRF=41;SRP=92.0407;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:34:26,8:26:1001:8:324:-19.2944,0,-80.1484 0/0:4:4,0:4:160:0:0:0,-1.20412,-14.7838 0/0:11:11,0:11:431:0:0:0,-3.31133,-39.1418 dDocent_Contig_15588 18 . A G 123.904 . AB=0.26087;ABP=14.4341;AC=2;AF=0.333333;AN=6;AO=6;CIGAR=1X;DP=24;DPB=24;DPRA=11.5;EPP=16.0391;EPPR=42.0968;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=245;QR=705;RO=18;RPL=0;RPP=16.0391;RPPR=42.0968;RPR=6;RUN=1;SAF=6;SAP=16.0391;SAR=0;SRF=18;SRP=42.0968;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:12:8,4:8:297:4:164:-11.5375,0,-23.4614 0/0:1:1,0:1:41:0:0:0,-0.30103,-4.09457 0/1:11:9,2:9:367:2:81:-4.3744,0,-30.0839 dDocent_Contig_15589 14 . T G 196.839 . AB=0.230769;ABP=35.7494;AC=3;AF=0.5;AN=6;AO=12;CIGAR=1X;DP=52;DPB=52;DPRA=0;EPP=29.068;EPPR=89.8692;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=442;QR=1528;RO=40;RPL=0;RPP=29.068;RPPR=89.8692;RPR=12;RUN=1;SAF=12;SAP=29.068;SAR=0;SRF=40;SRP=89.8692;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:14:11,3:11:423:3:110:-6.04658,0,-34.209 0/1:11:7,4:7:262:4:149:-10.4623,0,-20.6262 0/1:27:22,5:22:843:5:183:-8.69795,0,-68.0646 dDocent_Contig_15591 12 . G C 2706.33 . AB=0.56051;ABP=8.0033;AC=4;AF=0.666667;AN=6;AO=88;CIGAR=1X1M;DP=157;DPB=157;DPRA=0;EPP=194.1;EPPR=124.613;GTI=0;LEN=1;MEANALT=1.66667;MQM=60;MQMR=60;NS=3;NUMALT=2;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=3546;QR=2207;RO=56;RPL=0;RPP=194.1;RPPR=124.613;RPR=88;RUN=1;SAF=88;SAP=194.1;SAR=0;SRF=56;SRP=124.613;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|1:71:31,8,32:31:1212:8,32:328,1293:-97.261,-79.5191,-176.739,0,-72.5434,-89.987 1|1:50:5,5,40:5:199:5,40:202,1611:-131.547,-116.398,-131.278,-0.273348,0,-4.61518 0|1:36:20,0,16:20:796:0,16:0,642:-47.2767,-53.2973,-118.833,0,-65.9352,-61.1187 dDocent_Contig_15592 23 . A T 1324.05 . AB=0.156716;ABP=277.329;AC=1;AF=0.166667;AN=6;AO=42;CIGAR=1X2M1X3M;DP=268;DPB=281.429;DPRA=0;EPP=94.2121;EPPR=304.845;GTI=0;LEN=1;MEANALT=3.33333;MQM=60;MQMR=60;NS=3;NUMALT=3;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=1652;QR=5437;RO=139;RPL=0;RPP=94.2121;RPPR=304.845;RPR=42;RUN=1;SAF=42;SAP=94.2121;SAR=0;SRF=139;SRP=304.845;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|1:171:78,37,36,20:78:3053:37,36,20:1458,1316,797:-96.4738,0,-239.895,-12.4563,-143.531,-252.642,-54.324,-185.405,-197.852,-299.334 0|0:42:23,3,6,10:23:882:3,6,10:113,228,367:-23.0551,-20.7205,-92.2106,-11.28,-74.4181,-81.8693,0,-63.1327,-53.6947,-69.3794 0|0:55:38,2,5,9:38:1502:2,5,9:81,193,362:-18.3988,-23.1579,-146.158,-13.9928,-130.911,-136.085,0,-116.925,-107.756,-120.895 dDocent_Contig_15593 9 . A G 289.56 . AB=0.202381;ABP=67.6375;AC=2;AF=0.333333;AN=6;AO=17;CIGAR=1X;DP=116;DPB=116;DPRA=1.3125;EPP=39.9253;EPPR=217.986;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=59.101;NS=3;NUMALT=1;ODDS=6.93889e-18;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=634;QR=3796;RO=99;RPL=0;RPP=39.9253;RPPR=217.986;RPR=17;RUN=1;SAF=17;SAP=39.9253;SAR=0;SRF=99;SRP=217.986;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:47:39,8:39:1486:8:304:-13.5707,0,-119.788 0/0:32:32,0:32:1224:0:0:0,-9.63296,-110.435 0/1:37:28,9:28:1086:9:330:-18.9081,0,-86.8983 dDocent_Contig_15594 40 . C A 127.831 . AB=0.183673;ABP=45.5977;AC=3;AF=0.5;AN=6;AO=9;CIGAR=1X;DP=49;DPB=49;DPRA=0;EPP=22.5536;EPPR=89.8692;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=353;QR=1617;RO=40;RPL=0;RPP=22.5536;RPPR=89.8692;RPR=9;RUN=1;SAF=9;SAP=22.5536;SAR=0;SRF=40;SRP=89.8692;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:18:16,2:16:645:2:79:-2.0787,0,-52.9658 0/1:14:9,5:9:362:5:193:-13.5229,0,-28.7301 0/1:17:15,2:15:610:2:81:-2.56822,0,-50.1201 dDocent_Contig_15595 70 . T G 379.953 . AB=0.516129;ABP=3.08035;AC=3;AF=0.5;AN=6;AO=16;CIGAR=1X;DP=31;DPB=31;DPRA=0;EPP=37.7539;EPPR=35.5824;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=575;QR=549;RO=15;RPL=16;RPP=37.7539;RPPR=35.5824;RPR=0;RUN=1;SAF=16;SAP=37.7539;SAR=0;SRF=15;SRP=35.5824;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:16:8,8:8:295:8:287:-21.3589,0,-22.0868 0/1:4:1,3:1:37:3:112:-9.24237,0,-2.49371 0/1:11:6,5:6:217:5:176:-12.8728,0,-16.5701 dDocent_Contig_15596 192 . C T 54.2229 . AB=0.181818;ABP=22.3561;AC=2;AF=0.5;AN=4;AO=4;CIGAR=1X;DP=22;DPB=22;DPRA=0;EPP=11.6962;EPPR=42.0968;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=2;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=164;QR=709;RO=18;RPL=4;RPP=11.6962;RPPR=42.0968;RPR=0;RUN=1;SAF=0;SAP=11.6962;SAR=4;SRF=0;SRP=42.0968;SRR=18;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:15:12,3:12:467:3:123:-6.94934,0,-37.8572 ./.:.:.:.:.:.:.:. 0/1:7:6,1:6:242:1:41:-1.98736,0,-20.0503 dDocent_Contig_15597 66 . T C 197.902 . AB=0.333333;ABP=8.80089;AC=1;AF=0.25;AN=4;AO=8;CIGAR=1X;DP=35;DPB=35;DPRA=2.18182;EPP=20.3821;EPPR=61.6401;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=2;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=315;QR=972;RO=27;RPL=8;RPP=20.3821;RPPR=61.6401;RPR=0;RUN=1;SAF=8;SAP=20.3821;SAR=0;SRF=27;SRP=61.6401;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:24:16,8:16:583:8:315:-21.4892,0,-45.5794 ./.:.:.:.:.:.:.:. 0/0:11:11,0:11:389:0:0:0,-3.31133,-35.3435 dDocent_Contig_15599 19 . G A 716.844 . AB=0.325301;ABP=25.0128;AC=3;AF=0.5;AN=6;AO=27;CIGAR=1X2M1X2M1X;DP=83;DPB=83;DPRA=0;EPP=61.6401;EPPR=79.0118;GTI=0;LEN=1;MEANALT=2.66667;MQM=60;MQMR=60;NS=3;NUMALT=5;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=1061;QR=1379;RO=35;RPL=0;RPP=61.6401;RPPR=79.0118;RPR=27;RUN=1;SAF=27;SAP=61.6401;SAR=0;SRF=35;SRP=79.0118;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|1:40:14,15,6,5,0,0:14:549:15,6,5,0,0:592,240,196,0,0:-44.4948,0,-40.628,-28.9375,-25.3713,-72.2764,-32.5924,-29.0264,-57.9652,-76.2315,-48.7092,-45.1435,-74.0826,-77.7366,-93.8539,-48.7092,-45.1435,-74.0826,-77.7366,-93.8539,-93.8539 0|1:6:5,1,0,0,0,0:5:194:1,0,0,0,0:40,0,0,0,0:-2.1895,0,-16.0267,-3.69465,-16.3277,-19.6248,-3.69465,-16.3277,-19.6248,-19.6248,-3.69465,-16.3277,-19.6248,-19.6248,-19.6248,-3.69465,-16.3277,-19.6248,-19.6248,-19.6248,-19.6248 0|1:37:16,11,6,0,2,2:16:636:11,6,0,2,2:429,238,0,82,82:-30.4381,0,-49.0487,-15.6625,-32.7691,-66.2202,-35.2546,-52.36,-68.0264,-87.6181,-28.485,-45.591,-61.2573,-80.8492,-80.2472,-28.485,-45.591,-61.2573,-80.8492,-74.0802,-80.2472 dDocent_Contig_15600 43 . T C 678.109 . AB=0.5;ABP=3.0103;AC=3;AF=0.5;AN=6;AO=25;CIGAR=1X;DP=50;DPB=50;DPRA=0;EPP=57.2971;EPPR=57.2971;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=970;QR=953;RO=25;RPL=0;RPP=57.2971;RPPR=57.2971;RPR=25;RUN=1;SAF=25;SAP=57.2971;SAR=0;SRF=25;SRP=57.2971;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:29:16,13:16:606:13:507:-37.2486,0,-46.1442 0/1:9:5,4:5:195:4:155:-11.6162,0,-15.2144 0/1:12:4,8:4:152:8:308:-24.4689,0,-10.4374 dDocent_Contig_15601 23 . C T 69.1289 . AB=0.181818;ABP=22.3561;AC=1;AF=0.166667;AN=6;AO=4;CIGAR=1X;DP=59;DPB=59;DPRA=1.18919;EPP=11.6962;EPPR=122.441;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=163;QR=2212;RO=55;RPL=0;RPP=11.6962;RPPR=122.441;RPR=4;RUN=1;SAF=4;SAP=11.6962;SAR=0;SRF=55;SRP=122.441;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:22:18,4:18:727:4:163:-8.43577,0,-59.1306 0/0:18:18,0:18:717:0:0:0,-5.41854,-64.8523 0/0:19:19,0:19:768:0:0:0,-5.71957,-69.4402 dDocent_Contig_15602 107 . N A 250.056 . AB=0;ABP=0;AC=4;AF=1;AN=4;AO=8;CIGAR=1X;DP=8;DPB=8;DPRA=0;EPP=20.3821;EPPR=0;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=0;NS=2;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=267;QR=0;RO=0;RPL=0;RPP=20.3821;RPPR=0;RPR=8;RUN=1;SAF=0;SAP=20.3821;SAR=8;SRF=0;SRP=0;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 1/1:7:0,7:0:0:7:232:-21.2048,-2.10721,0 ./.:.:.:.:.:.:.:. 1/1:1:0,1:0:0:1:35:-3.49863,-0.30103,0 dDocent_Contig_15604 15 . C G 1630.48 . AB=0.335106;ABP=47.41;AC=3;AF=0.5;AN=6;AO=63;CIGAR=1X;DP=188;DPB=188;DPRA=0;EPP=139.813;EPPR=272.273;GTI=0;LEN=1;MEANALT=1.33333;MQM=60;MQMR=59.5484;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=0.919355;PAO=0;PQA=0;PQR=0;PRO=0;QA=2491;QR=4964;RO=124;RPL=0;RPP=139.813;RPPR=272.273;RPR=63;RUN=1;SAF=63;SAP=139.813;SAR=0;SRF=124;SRP=272.273;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:111:59,52:59:2375:52:2051:-151.357,0,-180.46 0/1:19:16,3:16:644:3:122:-5.65292,0,-52.574 0/1:58:49,8:49:1945:8:318:-11.5607,0,-157.745 dDocent_Contig_15605 13 . C A 5593.94 . AB=0.873239;ABP=88.9211;AC=4;AF=0.666667;AN=6;AO=169;CIGAR=1X;DP=185;DPB=185;DPRA=0;EPP=369.989;EPPR=37.7539;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=6778;QR=648;RO=16;RPL=0;RPP=369.989;RPPR=37.7539;RPR=169;RUN=1;SAF=169;SAP=369.989;SAR=0;SRF=16;SRP=37.7539;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 1/1:114:7,107:7:287:107:4281:-359.026,-8.11219,0 0/1:9:2,7:2:76:7:277:-22.5896,0,-4.50554 0/1:62:7,55:7:285:55:2220:-181.301,0,-7.36055 dDocent_Contig_15606 21 . C A 373.064 . AB=0.481481;ABP=3.09072;AC=2;AF=0.333333;AN=6;AO=13;CIGAR=1X;DP=32;DPB=32;DPRA=2.7;EPP=31.2394;EPPR=44.2683;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=521;QR=767;RO=19;RPL=0;RPP=31.2394;RPPR=44.2683;RPR=13;RUN=1;SAF=13;SAP=31.2394;SAR=0;SRF=19;SRP=44.2683;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:16:4,12:4:161:12:481:-38.8223,0,-10.0588 0/0:5:5,0:5:199:0:0:0,-1.50515,-18.2881 0/1:11:10,1:10:407:1:40:-0.684349,0,-33.6791 dDocent_Contig_15608 38 . C T 209.135 . AB=0.2;ABP=46.0055;AC=2;AF=0.333333;AN=6;AO=12;CIGAR=1X;DP=69;DPB=69;DPRA=0;EPP=29.068;EPPR=126.784;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=488;QR=2277;RO=57;RPL=0;RPP=29.068;RPPR=126.784;RPR=12;RUN=1;SAF=12;SAP=29.068;SAR=0;SRF=57;SRP=126.784;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:38:30,8:30:1206:8:325:-18.1803,0,-97.37 0/1:17:14,3:14:565:3:122:-6.25498,0,-46.0754 0/0:14:13,1:13:506:1:41:0,-0.119853,-41.7825 dDocent_Contig_15609 15 . A C 33.9129 . AB=0.102564;ABP=56.5176;AC=1;AF=0.166667;AN=6;AO=9;CIGAR=1M1X1M;DP=138;DPB=138;DPRA=0;EPP=22.5536;EPPR=248.387;GTI=0;LEN=1;MEANALT=3.5;MQM=60;MQMR=59.9646;NS=3;NUMALT=3;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=366;QR=4477;RO=113;RPL=0;RPP=22.5536;RPPR=248.387;RPR=9;RUN=1;SAF=9;SAP=22.5536;SAR=0;SRF=113;SRP=248.387;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|0:84:67,7,5,0:67:2664:7,5,0:281,203,0:0,-18.6389,-235.851,-3.36708,-221.216,-221.352,-20.169,-237.958,-222.858,-239.602 0|0:15:13,0,0,2:13:512:0,0,2:0,0,82:-3.26423,-7.17762,-49.2813,-7.17762,-49.2813,-49.2813,0,-42.511,-42.511,-41.909 0|1:39:33,1,4,1:33:1301:1,4,1:41,163,38:-3.6387,-13.3907,-120.115,0,-106.967,-105.993,-10.4661,-117.317,-104.097,-117.246 dDocent_Contig_15610 13 . A T 165.999 . AB=0.05;ABP=143.722;AC=0;AF=0;AN=6;AO=4;CIGAR=3M1X7M;DP=129;DPB=129;DPRA=4;EPP=11.6962;EPPR=181.071;GTI=0;LEN=1;MEANALT=8;MQM=60;MQMR=60;NS=3;NUMALT=8;ODDS=0;PAIRED=1;PAIREDR=0.890244;PAO=0;PQA=0;PQR=0;PRO=0;QA=164;QR=3198;RO=82;RPL=0;RPP=11.6962;RPPR=181.071;RPR=4;RUN=1;SAF=4;SAP=11.6962;SAR=0;SRF=82;SRP=181.071;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|0:80:49,0,0,8,5,0,4,4,5:49:1907:0,0,8,5,0,4,4,5:0,0,324,195,0,164,146,181:-11.9706,-26.7211,-183.43,-26.7211,-183.43,-183.43,0,-156.712,-156.712,-154.304,-10.6937,-167.403,-167.403,-140.685,-165.898,-26.7211,-183.43,-183.43,-156.712,-167.403,-183.43,-13.1821,-169.893,-169.893,-143.175,-153.865,-169.893,-168.689,-14.8029,-171.51,-171.51,-144.792,-155.482,-171.51,-157.972,-170.306,-11.9549,-168.66,-168.66,-141.943,-152.633,-168.66,-155.123,-156.74,-167.155 0|0:20:19,0,0,0,0,0,0,1,0:19:748:0,0,0,0,0,0,1,0:0,0,0,0,0,0,40,0:0,-5.71957,-67.2474,-5.71957,-67.2474,-67.2474,-5.71957,-67.2474,-67.2474,-67.2474,-5.71957,-67.2474,-67.2474,-67.2474,-67.2474,-5.71957,-67.2474,-67.2474,-67.2474,-67.2474,-67.2474,-5.71957,-67.2474,-67.2474,-67.2474,-67.2474,-67.2474,-67.2474,-2.02492,-63.952,-63.952,-63.952,-63.952,-63.952,-63.952,-63.6509,-5.71957,-67.2474,-67.2474,-67.2474,-67.2474,-67.2474,-67.2474,-63.952,-67.2474 0|0:29:14,2,2,1,2,4,0,2,2:14:543:2,2,1,2,4,0,2,2:79,80,41,80,151,0,82,82:-8.15217,-5.86588,-49.8705,-5.77612,-43.882,-49.7811,-8.98157,-47.0878,-46.9984,-53.288,-5.77592,-43.8818,-43.7924,-46.9982,-49.7809,0,-38.1016,-38.0122,-41.2179,-38.0119,-43.3984,-12.3666,-50.4726,-50.3832,-53.589,-50.383,-44.6026,-56.9737,-5.5964,-43.703,-43.6136,-46.8195,-43.6134,-37.8331,-50.2043,-49.6022,-5.5964,-43.703,-43.6136,-46.8195,-43.6134,-37.8331,-50.2043,-43.4346,-49.6022 dDocent_Contig_15611 26 . G T 67.235 . AB=0.133333;ABP=55.5599;AC=1;AF=0.166667;AN=6;AO=6;CIGAR=1X;DP=64;DPB=64;DPRA=4.73684;EPP=16.0391;EPPR=128.956;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=238;QR=2329;RO=58;RPL=0;RPP=16.0391;RPPR=128.956;RPR=6;RUN=1;SAF=6;SAP=16.0391;SAR=0;SRF=58;SRP=128.956;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:45:39,6:39:1569:6:238:-8.2462,0,-127.9 0/0:3:3,0:3:116:0:0:0,-0.90309,-10.817 0/0:16:16,0:16:644:0:0:0,-4.81648,-58.2931 dDocent_Contig_15612 47 . T A 128.163 . AB=0.21875;ABP=24.9965;AC=2;AF=0.333333;AN=6;AO=7;CIGAR=1X;DP=40;DPB=40;DPRA=2;EPP=18.2106;EPPR=58.3499;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=280;QR=1134;RO=33;RPL=0;RPP=18.2106;RPPR=58.3499;RPR=7;RUN=1;SAF=7;SAP=18.2106;SAR=0;SRF=33;SRP=74.6689;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:11:7,4:7:250:4:159:-11.3804,0,-19.5335 0/0:8:8,0:8:280:0:0:0,-2.40824,-25.5322 0/1:21:18,3:18:604:3:121:-4.95857,0,-48.3315 dDocent_Contig_15613 16 . A T 257.479 . AB=0.229508;ABP=41.7764;AC=3;AF=0.5;AN=6;AO=14;CIGAR=1X;DP=61;DPB=61;DPRA=0;EPP=25.3454;EPPR=105.07;GTI=0;LEN=1;MEANALT=1;MQM=55.2143;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=0.928571;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=547;QR=1876;RO=47;RPL=0;RPP=33.4109;RPPR=105.07;RPR=14;RUN=1;SAF=13;SAP=25.3454;SAR=1;SRF=47;SRP=105.07;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:22:19,3:19:765:3:118:-4.32321,0,-62.5489 0/1:14:7,7:7:282:7:273:-20.718,0,-21.5382 0/1:25:21,4:21:829:4:156:-6.22886,0,-67.3977 dDocent_Contig_15615 31 . A G 96.1941 . AB=0.238095;ABP=15.5221;AC=1;AF=0.166667;AN=6;AO=5;CIGAR=1X;DP=31;DPB=31;DPRA=4.2;EPP=13.8677;EPPR=59.4686;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=190;QR=990;RO=26;RPL=0;RPP=13.8677;RPPR=59.4686;RPR=5;RUN=1;SAF=5;SAP=13.8677;SAR=0;SRF=26;SRP=59.4686;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:21:16,5:16:597:5:190:-11.1422,0,-47.7306 0/0:5:5,0:5:202:0:0:0,-1.50515,-18.5619 0/0:5:5,0:5:191:0:0:0,-1.50515,-17.5569 dDocent_Contig_15616 17 . C T 742.297 . AB=0.441176;ABP=5.05404;AC=2;AF=0.333333;AN=6;AO=30;CIGAR=1X;DP=70;DPB=70;DPRA=17;EPP=68.1545;EPPR=89.8692;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=1084;QR=1624;RO=40;RPL=0;RPP=68.1545;RPPR=89.8692;RPR=30;RUN=1;SAF=30;SAP=68.1545;SAR=0;SRF=40;SRP=89.8692;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:51:31,20:31:1260:20:713:-49.1307,0,-98.3121 0/0:2:2,0:2:81:0:0:0,-0.60206,-7.68573 0/1:17:7,10:7:283:10:371:-28.6215,0,-20.7261 dDocent_Contig_15617 161 . T G 81.3706 . AB=0.153846;ABP=16.5402;AC=3;AF=0.5;AN=6;AO=5;CIGAR=1X;DP=34;DPB=34;DPRA=0;EPP=13.8677;EPPR=65.983;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=1.73472e-18;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=175;QR=1149;RO=29;RPL=5;RPP=13.8677;RPPR=65.983;RPR=0;RUN=1;SAF=0;SAP=13.8677;SAR=5;SRF=0;SRP=65.983;SRR=29;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:19:18,1:18:716:1:32:0,-2.52026,-61.5676 1/1:2:0,2:0:0:2:62:-5.88479,-0.60206,0 0/1:13:11,2:11:433:2:81:-3.77234,0,-35.4096 dDocent_Contig_15618 1 . N G 97.0363 . AB=0;ABP=0;AC=2;AF=1;AN=2;AO=3;CIGAR=1X;DP=3;DPB=3;DPRA=0;EPP=9.52472;EPPR=0;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=0;NS=1;NUMALT=1;ODDS=6.68461;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=104;QR=0;RO=0;RPL=0;RPP=9.52472;RPPR=0;RPR=3;RUN=1;SAF=0;SAP=9.52472;SAR=3;SRF=0;SRP=0;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL ./.:.:.:.:.:.:.:. 1/1:3:0,3:0:0:3:104:-9.70309,-0.90309,0 ./.:.:.:.:.:.:.:. dDocent_Contig_15621 56 . A G 815.289 . AB=0.460317;ABP=3.872;AC=3;AF=0.5;AN=6;AO=29;CIGAR=1X;DP=63;DPB=63;DPRA=0;EPP=65.983;EPPR=76.8404;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=1166;QR=1246;RO=34;RPL=29;RPP=65.983;RPPR=76.8404;RPR=0;RUN=1;SAF=0;SAP=65.983;SAR=29;SRF=34;SRP=76.8404;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:14:9,5:9:331:5:202:-14.3474,0,-25.9263 0/1:28:14,14:14:510:14:569:-43.1236,0,-37.8105 0/1:21:11,10:11:405:10:395:-29.5806,0,-30.4756 dDocent_Contig_15623 89 . T C 115.114 . AB=0.14433;ABP=109.592;AC=2;AF=0.333333;AN=6;AO=14;CIGAR=1X1M1X;DP=100;DPB=100;DPRA=16.1667;EPP=33.4109;EPPR=189.757;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=6.93889e-18;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=484;QR=2937;RO=86;RPL=14;RPP=33.4109;RPPR=189.757;RPR=0;RUN=1;SAF=14;SAP=33.4109;SAR=0;SRF=86;SRP=189.757;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|1:60:51,9:51:1746:9:313:-10.4453,0,-139.363 0|0:3:3,0:3:104:0:0:0,-0.90309,-9.70309 0|1:37:32,5:32:1087:5:171:-4.58847,0,-86.9945 dDocent_Contig_15625 80 . G T 81.5003 . AB=0.102564;ABP=56.5176;AC=0;AF=0;AN=6;AO=4;CIGAR=1X1M1X;DP=57;DPB=57;DPRA=0;EPP=11.6962;EPPR=96.3836;GTI=0;LEN=1;MEANALT=2.5;MQM=60;MQMR=60;NS=3;NUMALT=2;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=135;QR=1456;RO=43;RPL=4;RPP=11.6962;RPPR=96.3836;RPR=0;RUN=1;SAF=4;SAP=11.6962;SAR=0;SRF=43;SRP=96.3836;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|0:26:20,3,3:20:684:3,3:102,105:-2.5276,-0.279265,-54.8865,0,-47.2454,-54.6159 0|0:13:7,1,4:7:241:1,4:33,136:-9.02127,-8.45262,-27.7619,0,-17.0206,-18.487 0|0:18:16,0,2:16:531:0,2:0,70:-1.22886,-6.04534,-48.9865,0,-43.289,-42.6869 dDocent_Contig_15626 33 . C A 253.463 . AB=0.4;ABP=5.18177;AC=2;AF=0.333333;AN=6;AO=10;CIGAR=1X2M1X;DP=35;DPB=35;DPRA=1.25;EPP=24.725;EPPR=57.2971;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=0;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=396;QR=950;RO=25;RPL=0;RPP=24.725;RPPR=57.2971;RPR=10;RUN=1;SAF=10;SAP=24.725;SAR=0;SRF=25;SRP=57.2971;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|0:10:10,0:10:381:0:0:0,-3.0103,-34.6381 0|1:9:5,4:5:185:4:159:-11.9822,0,-14.298 0|1:16:10,6:10:384:6:237:-16.887,0,-30.0955 dDocent_Contig_15627 66 . G A 52.0518 . AB=0.230769;ABP=11.1951;AC=1;AF=0.25;AN=4;AO=4;CIGAR=1X;DP=50;DPB=50;DPRA=0;EPP=11.6962;EPPR=102.898;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=2;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=155;QR=1757;RO=46;RPL=4;RPP=11.6962;RPPR=102.898;RPR=0;RUN=1;SAF=4;SAP=11.6962;SAR=0;SRF=46;SRP=102.898;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:13:10,3:10:387:3:116:-6.90415,0,-31.2625 ./.:.:.:.:.:.:.:. 0/0:37:36,1:36:1370:1:39:0,-7.24155,-119.684 dDocent_Contig_15628 12 . G C 316.506 . AB=0.16;ABP=128.521;AC=2;AF=0.333333;AN=6;AO=20;CIGAR=1X;DP=153;DPB=153;DPRA=2.23214;EPP=46.4397;EPPR=291.816;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=801;QR=5276;RO=133;RPL=0;RPP=46.4397;RPPR=291.816;RPR=20;RUN=1;SAF=20;SAP=46.4397;SAR=0;SRF=133;SRP=291.816;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:85:70,15:70:2793:15:605:-29.2003,0,-225.891 0/0:28:28,0:28:1091:0:0:0,-8.42884,-98.4675 0/1:40:35,5:35:1392:5:196:-5.9731,0,-113.488 dDocent_Contig_15629 10 . C T 147.05 . AB=0.21875;ABP=24.9965;AC=1;AF=0.166667;AN=6;AO=7;CIGAR=1X1M1X;DP=57;DPB=57;DPRA=2.56;EPP=18.2106;EPPR=107.241;GTI=0;LEN=1;MEANALT=2;MQM=60;MQMR=59.4167;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=0.9375;PAO=0;PQA=0;PQR=0;PRO=0;QA=284;QR=1919;RO=48;RPL=0;RPP=18.2106;RPPR=107.241;RPR=7;RUN=1;SAF=7;SAP=18.2106;SAR=0;SRF=48;SRP=107.241;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|1:32:24,7:24:959:7:284:-16.2279,0,-76.8135 0|0:10:10,0:10:400:0:0:0,-3.0103,-36.3599 0|0:15:14,0:14:560:0:0:0,-4.21442,-50.3189 dDocent_Contig_15630 10 . C A 147.441 . AB=0.269231;ABP=15.0369;AC=2;AF=0.333333;AN=6;AO=7;CIGAR=1X;DP=45;DPB=45;DPRA=0.684211;EPP=18.2106;EPPR=85.5263;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=273;QR=1480;RO=38;RPL=0;RPP=18.2106;RPPR=85.5263;RPR=7;RUN=1;SAF=7;SAP=18.2106;SAR=0;SRF=38;SRP=85.5263;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:8:7,1:7:271:1:33:-0.890895,0,-22.3409 0/0:19:19,0:19:738:0:0:0,-5.71957,-66.7411 0/1:18:12,6:12:471:6:240:-16.5569,0,-37.3182 dDocent_Contig_15631 7 . A G 724.219 . AB=0.5;ABP=3.0103;AC=4;AF=0.666667;AN=6;AO=28;CIGAR=2X2M1I2M;DP=50;DPB=54.6667;DPRA=0;EPP=63.8115;EPPR=42.0968;GTI=0;LEN=1;MEANALT=1.33333;MQM=58.3929;MQMR=60;NS=3;NUMALT=2;ODDS=6.93889e-18;PAIRED=0;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=971;QR=693;RO=18;RPL=0;RPP=63.8115;RPPR=42.0968;RPR=28;RUN=1;SAF=28;SAP=63.8115;SAR=0;SRF=18;SRP=42.0968;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|1:24:12,12,0:12:460:12,0:416,0:-30.5393,0,-34.5215,-34.1517,-38.1338,-71.9208 1|1:6:0,6,0:0:0:6,0:210,0:-19.208,-1.80618,0,-19.208,-1.80618,-19.208 0|1:20:6,10,4:6:233:10,4:345,152:-26.1974,0,-16.1403,-15.5282,-6.68853,-33.4859 dDocent_Contig_15632 128 . A T 158.564 . AB=0.382353;ABP=7.09778;AC=2;AF=0.333333;AN=6;AO=13;CIGAR=2X;DP=50;DPB=50;DPRA=1.0625;EPP=31.2394;EPPR=83.3548;GTI=0;LEN=1;MEANALT=1;MQM=31;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=0;PAIREDR=0.891892;PAO=0;PQA=0;PQR=0;PRO=0;QA=445;QR=1263;RO=37;RPL=0;RPP=31.2394;RPPR=83.3548;RPR=13;RUN=1;SAF=0;SAP=31.2394;SAR=13;SRF=0;SRP=83.3548;SRR=37;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|1:29:18,11:18:610:11:375:-15.8612,0,-46.4872 0|1:5:3,2:3:104:2:70:-3.51368,0,-8.19794 0|0:16:16,0:16:549:0:0:0,-4.81648,-49.735 dDocent_Contig_15633 16 . T C 53.1636 . AB=0.148148;ABP=32.0437;AC=1;AF=0.166667;AN=6;AO=4;CIGAR=1X;DP=50;DPB=50;DPRA=2.34783;EPP=11.6962;EPPR=102.898;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=162;QR=1819;RO=46;RPL=0;RPP=11.6962;RPPR=102.898;RPR=4;RUN=1;SAF=4;SAP=11.6962;SAR=0;SRF=46;SRP=102.898;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:27:23,4:23:903:4:162:-6.83915,0,-73.4427 0/0:4:4,0:4:157:0:0:0,-1.20412,-14.5083 0/0:19:19,0:19:759:0:0:0,-5.71957,-68.6333 dDocent_Contig_15634 54 . T C 1687.21 . AB=0.468254;ABP=4.11327;AC=3;AF=0.5;AN=6;AO=59;CIGAR=1X;DP=126;DPB=126;DPRA=0;EPP=131.127;EPPR=148.499;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=2347;QR=2635;RO=67;RPL=59;RPP=131.127;RPPR=148.499;RPR=0;RUN=1;SAF=59;SAP=131.127;SAR=0;SRF=67;SRP=148.499;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:65:38,27:38:1490:27:1075:-77.4695,0,-114.777 0/1:22:10,12:10:378:12:485:-37.3786,0,-27.7427 0/1:39:19,20:19:767:20:787:-59.3953,0,-57.6088 dDocent_Contig_15635 10 . C A 77.5623 . AB=0.307692;ABP=7.18621;AC=1;AF=0.166667;AN=6;AO=5;CIGAR=1X;DP=43;DPB=43;DPRA=1.03571;EPP=13.8677;EPPR=85.5263;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=59.6842;NS=3;NUMALT=1;ODDS=1.73472e-18;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=187;QR=1530;RO=38;RPL=0;RPP=13.8677;RPPR=85.5263;RPR=5;RUN=1;SAF=5;SAP=13.8677;SAR=0;SRF=38;SRP=85.5263;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:16:15,1:15:604:1:41:0,-0.721913,-50.5505 0/0:14:14,0:14:564:0:0:0,-4.21442,-51.1035 0/1:13:9,4:9:362:4:146:-9.57986,0,-29.0308 dDocent_Contig_15636 23 . A C 181.348 . AB=0.75;ABP=7.35324;AC=1;AF=0.166667;AN=6;AO=6;CIGAR=1X;DP=26;DPB=26;DPRA=0.888889;EPP=16.0391;EPPR=46.4397;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=241;QR=806;RO=20;RPL=0;RPP=16.0391;RPPR=46.4397;RPR=6;RUN=1;SAF=6;SAP=16.0391;SAR=0;SRF=20;SRP=46.4397;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:8:2,6:2:81:6:241:-19.6576,0,-5.27749 0/0:9:9,0:9:366:0:0:0,-2.70927,-33.3046 0/0:9:9,0:9:359:0:0:0,-2.70927,-32.6729 dDocent_Contig_15637 9 . A C 31.7162 . AB=0.222222;ABP=9.04217;AC=1;AF=0.166667;AN=6;AO=2;CIGAR=1X;DP=34;DPB=34;DPRA=0.72;EPP=7.35324;EPPR=72.4974;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=78;QR=1239;RO=32;RPL=0;RPP=7.35324;RPPR=72.4974;RPR=2;RUN=1;SAF=2;SAP=7.35324;SAR=0;SRF=32;SRP=72.4974;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:9:7,2:7:272:2:78:-4.6942,0,-22.138 0/0:10:10,0:10:388:0:0:0,-3.0103,-35.2779 0/0:15:15,0:15:579:0:0:0,-4.51545,-52.4528 dDocent_Contig_15638 107 . N A 62.6944 . AB=0;ABP=0;AC=2;AF=1;AN=2;AO=2;CIGAR=1X;DP=2;DPB=2;DPRA=0;EPP=7.35324;EPPR=0;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=0;NS=1;NUMALT=1;ODDS=5.99146;PAIRED=1;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=66;QR=0;RO=0;RPL=0;RPP=7.35324;RPPR=0;RPR=2;RUN=1;SAF=0;SAP=7.35324;SAR=2;SRF=0;SRP=0;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL ./.:.:.:.:.:.:.:. ./.:.:.:.:.:.:.:. 1/1:2:0,2:0:0:2:66:-6.26836,-0.60206,0 dDocent_Contig_15639 20 . A G 66.0585 . AB=0.428571;ABP=3.32051;AC=1;AF=0.166667;AN=6;AO=3;CIGAR=1X;DP=21;DPB=21;DPRA=1;EPP=9.52472;EPPR=42.0968;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=113;QR=727;RO=18;RPL=0;RPP=9.52472;RPPR=42.0968;RPR=3;RUN=1;SAF=3;SAP=9.52472;SAR=0;SRF=18;SRP=42.0968;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:9:9,0:9:365:0:0:0,-2.70927,-33.2146 0/0:5:5,0:5:199:0:0:0,-1.50515,-18.2874 0/1:7:4,3:4:163:3:113:-8.42971,0,-12.9512 dDocent_Contig_15640 19 . C T 103.157 . AB=0.4;ABP=3.87889;AC=1;AF=0.166667;AN=6;AO=4;CIGAR=1X;DP=30;DPB=30;DPRA=1;EPP=11.6962;EPPR=59.4686;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=164;QR=1043;RO=26;RPL=0;RPP=11.6962;RPPR=59.4686;RPR=4;RUN=1;SAF=4;SAP=11.6962;SAR=0;SRF=26;SRP=59.4686;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:11:11,0:11:446:0:0:0,-3.31133,-40.4951 0/0:9:9,0:9:356:0:0:0,-2.70927,-32.4005 0/1:10:6,4:6:241:4:164:-12.1396,0,-19.0549 dDocent_Contig_15641 23 . T A 735.274 . AB=0.45614;ABP=3.9627;AC=4;AF=0.666667;AN=6;AO=26;CIGAR=1X7M;DP=57;DPB=57.25;DPRA=0;EPP=59.4686;EPPR=65.983;GTI=0;LEN=1;MEANALT=1.33333;MQM=60;MQMR=60;NS=3;NUMALT=2;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=1018;QR=1150;RO=29;RPL=0;RPP=59.4686;RPPR=65.983;RPR=26;RUN=1;SAF=26;SAP=59.4686;SAR=0;SRF=29;SRP=65.983;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|1:18:10,0,8:10:396:0,8:0,318:-23.5682,-26.5785,-59.1713,0,-32.9891,-30.5809 1|1:6:1,2,3:1:40:2,3:80,119:-12.7872,-6.49676,-9.19062,-3.29508,0,-5.68707 0|1:33:18,0,15:18:714:0,15:0,581:-42.6947,-48.1133,-106.894,0,-59.1718,-54.6563 dDocent_Contig_15642 33 . C A 1773.41 . AB=0.469697;ABP=4.06314;AC=3;AF=0.5;AN=6;AO=62;CIGAR=1X;DP=132;DPB=132;DPRA=0;EPP=137.642;EPPR=155.013;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=6.93889e-18;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=2463;QR=2796;RO=70;RPL=0;RPP=137.642;RPPR=155.013;RPR=62;RUN=1;SAF=62;SAP=137.642;SAR=0;SRF=70;SRP=155.013;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:88:42,46:42:1684:46:1841:-139.407,0,-125.293 0/1:22:9,13:9:357:13:506:-39.2624,0,-25.87 0/1:22:19,3:19:755:3:116:-4.19362,0,-61.6461 dDocent_Contig_15643 9 . A G 115.037 . AB=0.21875;ABP=24.9965;AC=2;AF=0.333333;AN=6;AO=9;CIGAR=2X;DP=100;DPB=100;DPRA=0;EPP=22.5536;EPPR=200.614;GTI=0;LEN=1;MEANALT=1;MQM=45.7778;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=0.444444;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=347;QR=3536;RO=91;RPL=0;RPP=22.5536;RPPR=200.614;RPR=9;RUN=1;SAF=9;SAP=22.5536;SAR=0;SRF=91;SRP=200.614;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|0:68:66,2:66:2567:2:78:0,-17.156,-227.887 0|1:8:6,2:6:233:2:74:-4.50711,0,-18.9305 0|1:24:19,5:19:736:5:195:-10.5191,0,-59.3399 dDocent_Contig_15645 77 . T G 579.471 . AB=0.267241;ABP=57.5966;AC=3;AF=0.5;AN=6;AO=31;CIGAR=1X;DP=116;DPB=116;DPRA=0;EPP=70.3259;EPPR=187.585;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=1082;QR=2981;RO=85;RPL=31;RPP=70.3259;RPPR=187.585;RPR=0;RUN=1;SAF=31;SAP=70.3259;SAR=0;SRF=85;SRP=187.585;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:75:52,23:52:1837:23:800:-49.739,0,-143.031 0/1:5:2,3:2:70:3:105:-8.29094,0,-5.14225 0/1:36:31,5:31:1074:5:177:-5.4399,0,-86.1278 dDocent_Contig_15646 30 . G A 668.277 . AB=0.38806;ABP=10.3026;AC=3;AF=0.5;AN=6;AO=26;CIGAR=2X;DP=67;DPB=67;DPRA=0;EPP=59.4686;EPPR=92.0407;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=1016;QR=1603;RO=41;RPL=0;RPP=59.4686;RPPR=92.0407;RPR=26;RUN=1;SAF=26;SAP=59.4686;SAR=0;SRF=41;SRP=92.0407;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|1:15:11,4:11:421:4:156:-9.90116,0,-33.7184 0|1:33:21,12:21:832:12:466:-32.3538,0,-65.2553 0|1:19:9,10:9:350:10:394:-30.0956,0,-26.1395 dDocent_Contig_15647 46 . G A 76.0278 . AB=0.184211;ABP=35.9253;AC=2;AF=0.5;AN=4;AO=7;CIGAR=1X;DP=38;DPB=38;DPRA=0;EPP=3.32051;EPPR=70.3259;GTI=0;LEN=1;MEANALT=1;MQM=43.5714;MQMR=60;NS=2;NUMALT=1;ODDS=0;PAIRED=0.285714;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=273;QR=1225;RO=31;RPL=0;RPP=18.2106;RPPR=70.3259;RPR=7;RUN=1;SAF=3;SAP=3.32051;SAR=4;SRF=31;SRP=70.3259;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:28:24,4:24:948:4:159:-3.79291,0,-77.1914 0/1:10:7,3:7:277:3:114:-7.50536,0,-22.2889 ./.:.:.:.:.:.:.:. dDocent_Contig_15648 16 . A C 258.001 . AB=0.4;ABP=5.18177;AC=2;AF=0.333333;AN=6;AO=11;CIGAR=1X;DP=43;DPB=43;DPRA=0;EPP=26.8965;EPPR=72.4974;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=0.96875;PAO=0;PQA=0;PQR=0;PRO=0;QA=442;QR=1262;RO=32;RPL=0;RPP=26.8965;RPPR=72.4974;RPR=11;RUN=1;SAF=11;SAP=26.8965;SAR=0;SRF=32;SRP=72.4974;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:16:10,6:10:404:6:242:-17.3405,0,-31.9039 0/0:18:17,1:17:663:1:41:0,-1.32397,-55.8991 0/1:9:5,4:5:195:4:159:-11.9825,0,-15.2138 dDocent_Contig_15649 62 . T A 143.773 . AB=0.195652;ABP=40.0197;AC=3;AF=0.5;AN=6;AO=9;CIGAR=1X;DP=46;DPB=46;DPRA=0;EPP=22.5536;EPPR=83.3548;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=0.972973;PAO=0;PQA=0;PQR=0;PRO=0;QA=362;QR=1465;RO=37;RPL=9;RPP=22.5536;RPPR=83.3548;RPR=0;RUN=1;SAF=9;SAP=22.5536;SAR=0;SRF=37;SRP=83.3548;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:18:15,3:15:596:3:120:-5.76877,0,-48.5582 0/1:17:14,3:14:550:3:120:-6.07018,0,-44.7254 0/1:11:8,3:8:319:3:122:-8.06116,0,-25.7657 dDocent_Contig_15650 21 . G A 1123.49 . AB=0.428571;ABP=7.35324;AC=3;AF=0.5;AN=6;AO=42;CIGAR=1X3M;DP=98;DPB=98;DPRA=0;EPP=94.2121;EPPR=102.898;GTI=0;LEN=1;MEANALT=2;MQM=60;MQMR=60;NS=3;NUMALT=2;ODDS=0;PAIRED=0.642857;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=1606;QR=1780;RO=46;RPL=0;RPP=94.2121;RPPR=102.898;RPR=42;RUN=1;SAF=42;SAP=94.2121;SAR=0;SRF=46;SRP=102.898;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|1:30:11,2,17:11:431:2,17:74,666:-51.468,-48.728,-83.5659,0,-29.408,-30.3408 0|1:42:16,7,19:16:636:7,19:275,734:-55.4516,-37.6474,-87.9089,0,-29.7493,-46.6472 0|1:26:19,1,6:19:713:1,6:40,206:-10.9519,-13.3683,-71.4835,0,-55.0723,-56.5624 dDocent_Contig_15651 10 . C T 34.9648 . AB=0.137931;ABP=36.0317;AC=2;AF=0.333333;AN=6;AO=7;CIGAR=1X;DP=68;DPB=68;DPRA=0;EPP=5.80219;EPPR=135.47;GTI=0;LEN=1;MEANALT=1;MQM=48;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=0;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=281;QR=2430;RO=61;RPL=0;RPP=18.2106;RPPR=135.47;RPR=7;RUN=1;SAF=5;SAP=5.80219;SAR=2;SRF=61;SRP=135.47;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:39:36,3:36:1435:3:120:0,-1.38835,-119.05 0/1:8:6,2:6:241:2:82:-5.30155,0,-19.6582 0/1:21:19,2:19:754:2:79:-1.11941,0,-61.8559 dDocent_Contig_15652 109 . A G 96.1303 . AB=0.105263;ABP=28.7251;AC=4;AF=0.666667;AN=6;AO=5;CIGAR=1X;DP=22;DPB=22;DPRA=0;EPP=13.8677;EPPR=39.9253;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=171;QR=591;RO=17;RPL=0;RPP=13.8677;RPPR=39.9253;RPR=5;RUN=1;SAF=0;SAP=13.8677;SAR=5;SRF=0;SRP=39.9253;SRR=17;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:10:9,1:9:314:1:35:-0.488329,0,-25.5876 1/1:3:0,3:0:0:3:101:-9.4236,-0.90309,0 0/1:9:8,1:8:277:1:35:-0.789359,0,-22.5576 dDocent_Contig_15653 174 . C T 369.589 . AB=0.384615;ABP=7.52028;AC=3;AF=0.5;AN=6;AO=15;CIGAR=1X;DP=39;DPB=39;DPRA=0;EPP=35.5824;EPPR=55.1256;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=590;QR=953;RO=24;RPL=15;RPP=35.5824;RPPR=55.1256;RPR=0;RUN=1;SAF=0;SAP=35.5824;SAR=15;SRF=0;SRP=55.1256;SRR=24;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:16:7,9:7:284:9:356:-27.584,0,-21.1169 0/1:4:2,2:2:82:2:79:-6.29351,0,-6.57556 0/1:19:15,4:15:587:4:155:-8.60428,0,-47.4445 dDocent_Contig_15654 13 . T G 1003.89 . AB=0.0583333;ABP=206.332;AC=0;AF=0;AN=6;AO=7;CIGAR=1X2M2X2M;DP=152;DPB=153.714;DPRA=0;EPP=18.2106;EPPR=152.842;GTI=0;LEN=1;MEANALT=7.5;MQM=54.7143;MQMR=60;NS=3;NUMALT=7;ODDS=0;PAIRED=0;PAIREDR=0.536232;PAO=0;PQA=0;PQR=0;PRO=0;QA=276;QR=2700;RO=69;RPL=0;RPP=18.2106;RPPR=152.842;RPR=7;RUN=1;SAF=7;SAP=18.2106;SAR=0;SRF=69;SRP=152.842;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|0:73:37,1,4,4,1,0,17,7:37:1441:1,4,4,1,0,17,7:40,150,157,38,0,661,286:-43.1805,-51.0233,-169.151,-42.0362,-157.169,-159.26,-41.441,-156.575,-147.586,-158.666,-51.2025,-166.336,-157.348,-156.753,-169.33,-54.3187,-169.452,-160.464,-159.87,-169.631,-172.748,0,-115.132,-106.144,-105.549,-115.311,-118.427,-113.309,-30.715,-145.851,-136.862,-136.268,-146.03,-149.146,-94.8249,-147.039 0|0:32:15,1,0,0,0,0,12,3:15:591:1,0,0,0,0,12,3:41,0,0,0,0,465,122:-33.6654,-34.796,-83.1157,-38.1809,-83.4168,-86.8013,-38.1809,-83.4168,-86.8013,-86.8013,-38.1809,-83.4168,-86.8013,-86.8013,-86.8013,-38.1809,-83.4168,-86.8013,-86.8013,-86.8013,-86.8013,0,-45.2191,-48.6037,-48.6037,-48.6037,-48.6037,-44.9913,-28.1155,-73.3523,-76.7369,-76.7369,-76.7369,-76.7369,-38.5393,-75.8338 0|0:47:17,4,0,3,3,3,11,3:17:668:4,0,3,3,3,11,3:163,0,119,117,117,417,120:-29.0655,-20.7333,-74.4753,-34.183,-75.6794,-89.1281,-24.4097,-65.9061,-79.355,-78.4519,-24.5656,-66.0618,-79.5106,-69.7375,-78.6075,-24.5747,-66.0709,-79.5197,-69.7466,-69.9023,-78.6166,0,-41.493,-54.9416,-45.1688,-45.3246,-45.3337,-51.6303,-24.2974,-65.794,-79.2429,-69.4697,-69.6254,-69.6345,-45.0567,-78.3398 dDocent_Contig_15655 18 . A T 312.114 . AB=0.52381;ABP=3.1137;AC=1;AF=0.166667;AN=6;AO=11;CIGAR=1X3M6D3M1X;DP=40;DPB=35.2857;DPRA=2.21053;EPP=26.8965;EPPR=65.983;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=430;QR=1121;RO=29;RPL=0;RPP=26.8965;RPPR=65.983;RPR=11;RUN=1;SAF=11;SAP=26.8965;SAR=0;SRF=29;SRP=65.983;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|1:21:10,11:10:386:11:430:-32.734,0,-28.7741 0|0:17:17,0:17:655:0:0:0,-5.11751,-59.2852 0|0:2:2,0:2:80:0:0:0,-0.60206,-7.59179 dDocent_Contig_15656 12 . G A 120.392 . AB=0.333333;ABP=6.62942;AC=1;AF=0.166667;AN=6;AO=5;CIGAR=1X;DP=54;DPB=54;DPRA=0.769231;EPP=13.8677;EPPR=109.412;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=0.938776;PAO=0;PQA=0;PQR=0;PRO=0;QA=200;QR=1941;RO=49;RPL=0;RPP=13.8677;RPPR=109.412;RPR=5;RUN=1;SAF=5;SAP=13.8677;SAR=0;SRF=49;SRP=109.412;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:35:35,0:35:1385:0:0:0,-10.536,-124.904 0/0:4:4,0:4:163:0:0:0,-1.20412,-15.0584 0/1:15:10,5:10:393:5:200:-13.863,0,-31.2082 dDocent_Contig_15657 120 . T C 101.73 . AB=0.357143;ABP=5.49198;AC=1;AF=0.166667;AN=6;AO=5;CIGAR=1X;DP=28;DPB=28;DPRA=2;EPP=13.8677;EPPR=52.9542;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=0.956522;PAO=0;PQA=0;PQR=0;PRO=0;QA=173;QR=803;RO=23;RPL=0;RPP=13.8677;RPPR=52.9542;RPR=5;RUN=1;SAF=0;SAP=13.8677;SAR=5;SRF=0;SRP=52.9542;SRR=23;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:14:9,5:9:315:5:173:-11.6957,0,-24.4743 0/0:11:11,0:11:383:0:0:0,-3.31133,-34.805 0/0:3:3,0:3:105:0:0:0,-0.90309,-9.79616 dDocent_Contig_15658 20 . T G 175.541 . AB=0.172414;ABP=57.0725;AC=1;AF=0.166667;AN=6;AO=10;CIGAR=1X;DP=85;DPB=85;DPRA=4.2963;EPP=24.725;EPPR=165.871;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=402;QR=3013;RO=75;RPL=0;RPP=24.725;RPPR=165.871;RPR=10;RUN=1;SAF=10;SAP=24.725;SAR=0;SRF=75;SRP=165.871;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:58:48,10:48:1920:10:402:-19.077,0,-155.532 0/0:16:16,0:16:651:0:0:0,-4.81648,-58.9224 0/0:11:11,0:11:442:0:0:0,-3.31133,-40.134 dDocent_Contig_15659 19 . A G 78.0052 . AB=0.2;ABP=22.5536;AC=3;AF=0.5;AN=6;AO=5;CIGAR=1X3M1X;DP=52;DPB=52;DPRA=0;EPP=13.8677;EPPR=92.0407;GTI=0;LEN=1;MEANALT=2;MQM=47;MQMR=60;NS=3;NUMALT=2;ODDS=0;PAIRED=0;PAIREDR=0.97561;PAO=0;PQA=0;PQR=0;PRO=0;QA=176;QR=1605;RO=41;RPL=0;RPP=13.8677;RPPR=92.0407;RPR=5;RUN=1;SAF=5;SAP=13.8677;SAR=0;SRF=41;SRP=92.0407;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|1:25:18,2,5:18:705:2,5:80,176:-8.62383,-7.43721,-64.8388,0,-51.3702,-56.4559 0|1:12:11,1,0:11:424:1,0:38,0:-0.184909,0,-34.899,-3.49624,-35.2001,-38.3161 0|1:15:12,2,0:12:476:2,0:78,0:-2.66743,0,-38.5862,-6.27979,-39.1883,-45.4711 dDocent_Contig_15660 32 . C A 288.196 . AB=0.173469;ABP=93.769;AC=2;AF=0.333333;AN=6;AO=18;CIGAR=1X;DP=122;DPB=122;DPRA=0;EPP=42.0968;EPPR=203.537;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=59.4808;NS=3;NUMALT=1;ODDS=6.93889e-18;PAIRED=0;PAIREDR=0.605769;PAO=0;PQA=0;PQR=0;PRO=0;QA=719;QR=4099;RO=104;RPL=0;RPP=42.0968;RPPR=228.843;RPR=18;RUN=1;SAF=18;SAP=42.0968;SAR=0;SRF=101;SRP=203.537;SRR=3;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:57:45,12:45:1793:12:475:-25.9406,0,-144.421 0/1:41:36,5:36:1408:5:204:-6.4018,0,-114.483 0/0:24:23,1:23:898:1:40:0,-3.22904,-77.1191 dDocent_Contig_15661 9 . A C 69.3865 . AB=0.157895;ABP=41.6397;AC=2;AF=0.333333;AN=6;AO=7;CIGAR=1X;DP=57;DPB=57;DPRA=0;EPP=18.2106;EPPR=111.584;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=273;QR=1904;RO=50;RPL=0;RPP=18.2106;RPPR=111.584;RPR=7;RUN=1;SAF=7;SAP=18.2106;SAR=0;SRF=50;SRP=111.584;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:19:18,1:18:673:1:39:0,-1.82301,-56.9998 0/1:19:17,2:17:658:2:78:-1.6839,0,-53.8375 0/1:19:15,4:15:573:4:156:-8.69772,0,-46.1922 dDocent_Contig_15662 72 . G A 242.257 . AB=0.307692;ABP=15.538;AC=2;AF=0.5;AN=4;AO=12;CIGAR=1X;DP=39;DPB=39;DPRA=0;EPP=29.068;EPPR=61.6401;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=2;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=433;QR=961;RO=27;RPL=12;RPP=29.068;RPPR=61.6401;RPR=0;RUN=1;SAF=12;SAP=29.068;SAR=0;SRF=27;SRP=61.6401;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:25:18,7:18:665:7:260:-16.2293,0,-52.6531 ./.:.:.:.:.:.:.:. 0/1:14:9,5:9:296:5:173:-11.6953,0,-22.7458 dDocent_Contig_15663 22 . A T 52.2041 . AB=0.666667;ABP=3.73412;AC=1;AF=0.166667;AN=6;AO=2;CIGAR=1X;DP=22;DPB=22;DPRA=0.315789;EPP=7.35324;EPPR=46.4397;GTI=0;LEN=1;MEANALT=1;MQM=48;MQMR=58.35;NS=3;NUMALT=1;ODDS=0;PAIRED=0;PAIREDR=0.95;PAO=0;PQA=0;PQR=0;PRO=0;QA=82;QR=791;RO=20;RPL=0;RPP=7.35324;RPPR=46.4397;RPR=2;RUN=1;SAF=2;SAP=7.35324;SAR=0;SRF=20;SRP=46.4397;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:9:9,0:9:363:0:0:0,-2.70927,-33.0336 0/1:3:1,2:1:39:2:82:-6.7368,0,-1.77039 0/0:10:10,0:10:389:0:0:0,-3.0103,-35.3635 dDocent_Contig_15664 35 . T C 614.657 . AB=0.62963;ABP=6.95112;AC=4;AF=0.666667;AN=6;AO=20;CIGAR=1X;DP=30;DPB=30;DPRA=0;EPP=46.4397;EPPR=24.725;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=800;QR=369;RO=10;RPL=0;RPP=46.4397;RPPR=24.725;RPR=20;RUN=1;SAF=20;SAP=46.4397;SAR=0;SRF=10;SRP=24.725;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:15:5,10:5:189:10:402:-32.0246,0,-12.8594 1/1:3:0,3:0:0:3:119:-11.095,-0.90309,0 0/1:12:5,7:5:180:7:279:-21.8688,0,-12.9384 dDocent_Contig_15665 37 . A T 1201.49 . AB=0.59322;ABP=7.46366;AC=4;AF=0.666667;AN=6;AO=39;CIGAR=1X;DP=63;DPB=63;DPRA=0;EPP=87.6977;EPPR=55.1256;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=0.692308;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=1560;QR=962;RO=24;RPL=0;RPP=87.6977;RPPR=55.1256;RPR=39;RUN=1;SAF=39;SAP=87.6977;SAR=0;SRF=24;SRP=55.1256;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:39:12,27:12:482:27:1084:-86.1049,0,-31.9876 1/1:4:0,4:0:0:4:159:-14.6923,-1.20412,0 0/1:20:12,8:12:480:8:317:-22.8742,0,-37.5288 dDocent_Contig_15666 12 . A T 223.454 . AB=0.173913;ABP=24.253;AC=3;AF=0.5;AN=6;AO=9;CIGAR=1X;DP=41;DPB=41;DPRA=1.07692;EPP=22.5536;EPPR=72.4974;GTI=0;LEN=1;MEANALT=1;MQM=53.7778;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=336;QR=1295;RO=32;RPL=0;RPP=22.5536;RPPR=72.4974;RPR=9;RUN=1;SAF=9;SAP=22.5536;SAR=0;SRF=32;SRP=72.4974;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:23:19,4:19:773:4:132:-5.21751,0,-62.9652 1/1:5:0,5:0:0:5:204:-18.6507,-1.50515,0 0/0:13:13,0:13:522:0:0:0,-3.91339,-47.3267 dDocent_Contig_15667 7 . A G 239.654 . AB=0.288889;ABP=20.4303;AC=2;AF=0.333333;AN=6;AO=14;CIGAR=1X3M;DP=73;DPB=73;DPRA=0;EPP=33.4109;EPPR=111.584;GTI=0;LEN=1;MEANALT=3;MQM=60;MQMR=60;NS=3;NUMALT=2;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=459;QR=1891;RO=50;RPL=0;RPP=33.4109;RPPR=111.584;RPR=14;RUN=1;SAF=14;SAP=33.4109;SAR=0;SRF=50;SRP=111.584;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|0:28:26,1,1:26:998:1,1:39,30:0,-4.57605,-86.2781,-5.47305,-84.1836,-87.0887 0|1:20:6,3,9:6:219:3,9:96,297:-22.237,-16.3069,-33.3152,0,-10.2096,-15.2329 0|1:25:18,2,4:18:674:2,4:72,132:-5.25123,-4.78329,-59.4246,0,-49.3637,-54.0332 dDocent_Contig_15668 66 . A T 77.4814 . AB=0.115385;ABP=36.4176;AC=1;AF=0.166667;AN=6;AO=3;CIGAR=1M1X6M1D10M;DP=43;DPB=43.1053;DPRA=3.25;EPP=9.52472;EPPR=79.0118;GTI=0;LEN=1;MEANALT=2;MQM=60;MQMR=60;NS=3;NUMALT=2;ODDS=0;PAIRED=1;PAIREDR=0.828571;PAO=0;PQA=0;PQR=0;PRO=0;QA=109;QR=1246;RO=35;RPL=3;RPP=9.52472;RPPR=79.0118;RPR=0;RUN=1;SAF=3;SAP=9.52472;SAR=0;SRF=35;SRP=79.0118;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|1:26:21,3,2:21:762:3,2:109,76:-2.57019,0,-61.3031,-2.65216,-55.9717,-64.2715 0|0:8:8,0,0:8:285:0,0:0,0:0,-2.40824,-25.994,-2.40824,-25.994,-25.994 0|0:9:6,0,3:6:199:0,3:0,122:-8.66322,-10.4694,-26.5164,0,-16.4283,-15.5252 dDocent_Contig_15669 15 . A G 1438.17 . AB=0.186667;ABP=66.9674;AC=0;AF=0;AN=6;AO=14;CIGAR=1M1X3M1I2M;DP=82;DPB=90.8571;DPRA=0;EPP=33.4109;EPPR=46.4397;GTI=0;LEN=1;MEANALT=2;MQM=60;MQMR=60;NS=3;NUMALT=2;ODDS=1.38778e-17;PAIRED=0.714286;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=550;QR=805;RO=20;RPL=0;RPP=33.4109;RPPR=46.4397;RPR=14;RUN=1;SAF=14;SAP=33.4109;SAR=0;SRF=20;SRP=46.4397;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|0:55:12,33,10:12:483:33,10:1303,397:-103.135,0,-29.8763,-74.0639,-7.13034,-110.863 0|0:20:6,10,4:6:242:10,4:386,153:-29.8177,0,-16.9506,-19.0712,-7.41576,-37.8223 0|0:7:2,5,0:2:80:5,0:202,0:-16.3872,0,-5.48458,-16.9893,-6.98973,-23.5788 dDocent_Contig_15670 36 . T C 39.6177 . AB=0.333333;ABP=4.45795;AC=1;AF=0.166667;AN=6;AO=2;CIGAR=1X;DP=23;DPB=23;DPRA=0.705882;EPP=7.35324;EPPR=48.6112;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=0;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=80;QR=837;RO=21;RPL=0;RPP=7.35324;RPPR=48.6112;RPR=2;RUN=1;SAF=2;SAP=7.35324;SAR=0;SRF=21;SRP=48.6112;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:6:6,0:6:242:0:0:0,-1.80618,-22.1569 0/0:11:11,0:11:439:0:0:0,-3.31133,-39.8646 0/1:6:4,2:4:156:2:80:-5.78561,0,-12.6088 dDocent_Contig_15672 1 . N G 317.228 . AB=0;ABP=0;AC=6;AF=1;AN=6;AO=1;CIGAR=1X4M;DP=22;DPB=22;DPRA=0.588235;EPP=5.18177;EPPR=0;GTI=0;LEN=1;MEANALT=2;MQM=13;MQMR=0;NS=3;NUMALT=2;ODDS=0;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=13;QR=0;RO=0;RPL=0;RPP=5.18177;RPPR=0;RPR=1;RUN=1;SAF=0;SAP=5.18177;SAR=1;SRF=0;SRP=0;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 1|1:11:0,11,0:0:0:11,0:370,0:-18.522,-3.31133,0,-18.522,-3.31133,-18.522 1|1:6:0,6,0:0:0:6,0:202,0:-7.49203,-1.80618,0,-7.49203,-1.80618,-7.49203 1|1:5:0,4,1:0:0:4,1:136,13:-5.23105,-1.20412,0,-4.63176,-0.495158,-4.33073 dDocent_Contig_15673 30 . G A 749.873 . AB=0.3125;ABP=32.3252;AC=2;AF=0.333333;AN=6;AO=31;CIGAR=1X;DP=121;DPB=121;DPRA=0;EPP=70.3259;EPPR=198.443;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=6.93889e-18;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=1226;QR=3533;RO=90;RPL=0;RPP=70.3259;RPPR=198.443;RPR=31;RUN=1;SAF=31;SAP=70.3259;SAR=0;SRF=90;SRP=198.443;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:90:63,27:63:2477:27:1070:-69.4988,0,-196 0/1:6:3,3:3:106:3:116:-9.01136,0,-8.08108 0/0:25:24,1:24:950:1:40:0,-3.53007,-81.8115 dDocent_Contig_15674 79 . A T 120.636 . AB=0.169231;ABP=64.7803;AC=2;AF=0.333333;AN=6;AO=11;CIGAR=1X;DP=70;DPB=70;DPRA=6.5;EPP=26.8965;EPPR=131.127;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=3.46945e-18;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=383;QR=2013;RO=59;RPL=11;RPP=26.8965;RPPR=131.127;RPR=0;RUN=1;SAF=11;SAP=26.8965;SAR=0;SRF=59;SRP=131.127;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:38:33,5:33:1130:5:174:-4.56281,0,-90.5667 0/0:5:5,0:5:174:0:0:0,-1.50515,-16.002 0/1:27:21,6:21:709:6:209:-11.0232,0,-55.9968 dDocent_Contig_15675 79 . G A 235.269 . AB=0.241379;ABP=36.7056;AC=2;AF=0.333333;AN=6;AO=16;CIGAR=1X;DP=131;DPB=131;DPRA=0;EPP=37.7539;EPPR=252.73;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=557;QR=4008;RO=115;RPL=16;RPP=37.7539;RPPR=252.73;RPR=0;RUN=1;SAF=16;SAP=37.7539;SAR=0;SRF=115;SRP=252.73;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:73:71,2:71:2469:2:70:0,-15.3279,-215.811 0/1:11:5,6:5:179:6:211:-16.0221,0,-13.149 0/1:47:39,8:39:1360:8:276:-11.0276,0,-108.551 dDocent_Contig_15676 68 . A G 84.7798 . AB=0.1875;ABP=30.1537;AC=2;AF=0.333333;AN=6;AO=6;CIGAR=1X;DP=60;DPB=60;DPRA=0.571429;EPP=16.0391;EPPR=120.27;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=232;QR=2069;RO=54;RPL=6;RPP=16.0391;RPPR=120.27;RPR=0;RUN=1;SAF=6;SAP=16.0391;SAR=0;SRF=54;SRP=120.27;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:28:28,0:28:1107:0:0:0,-8.42884,-99.9188 0/1:8:6,2:6:229:2:77:-4.89996,0,-18.5621 0/1:24:20,4:20:733:4:155:-7.10072,0,-59.0683 dDocent_Contig_15677 12 . T G 1378.4 . AB=0.176471;ABP=49.3776;AC=0;AF=0;AN=6;AO=9;CIGAR=1M1D1M1X2M;DP=94;DPB=82;DPRA=0;EPP=22.5536;EPPR=50.7827;GTI=0;LEN=1;MEANALT=3;MQM=60;MQMR=60;NS=3;NUMALT=3;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=366;QR=866;RO=22;RPL=0;RPP=22.5536;RPPR=50.7827;RPR=9;RUN=1;SAF=9;SAP=22.5536;SAR=0;SRF=22;SRP=50.7827;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|0:51:11,9,20,11:11:435:9,20,11:366,804,402:-62.9543,-36.0719,-69.1638,0,-5.60619,-29.7829,-33.4324,-39.0384,-2.97227,-65.9183 0|0:7:1,0,0,6:1:40:0,0,6:0,0,226:-18.5943,-18.8954,-22.1938,-18.8954,-22.1938,-22.1938,0,-3.69465,-3.69465,-1.88847 0|0:36:10,0,5,21:10:391:0,5,21:0,203,789:-61.6026,-64.6129,-96.7611,-47.8647,-80.0152,-78.5101,0,-32.1357,-15.3884,-25.8141 dDocent_Contig_15678 19 . G C 91.0402 . AB=0.181818;ABP=32.0291;AC=2;AF=0.333333;AN=6;AO=6;CIGAR=1X3M1X;DP=37;DPB=37;DPRA=4.125;EPP=16.0391;EPPR=68.1545;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=242;QR=1150;RO=30;RPL=0;RPP=16.0391;RPPR=68.1545;RPR=6;RUN=1;SAF=6;SAP=16.0391;SAR=0;SRF=30;SRP=68.1545;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|1:22:19,3:19:720:3:121:-4.65754,0,-58.5043 0|0:4:3,0:3:115:0:0:0,-0.90309,-10.5532 0|1:11:8,3:8:315:3:121:-7.96887,0,-25.4045 dDocent_Contig_15679 19 . A G 431.831 . AB=0.037037;ABP=153.807;AC=0;AF=0;AN=6;AO=3;CIGAR=3X3M1D3M;DP=98;DPB=97.6;DPRA=0;EPP=9.52472;EPPR=155.013;GTI=0;LEN=1;MEANALT=3;MQM=60;MQMR=60;NS=3;NUMALT=3;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=116;QR=2772;RO=70;RPL=0;RPP=9.52472;RPPR=155.013;RPR=3;RUN=1;SAF=3;SAP=9.52472;SAR=0;SRF=70;SRP=155.013;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|0:17:9,0,2,6:9:347:0,2,6:0,80,246:-17.6026,-20.3119,-48.7942,-13.7244,-42.2037,-41.6016,0,-28.4821,-21.8895,-26.6759 0|0:50:40,1,0,8:40:1585:1,0,8:40,0,325:-14.7694,-23.5161,-153.669,-26.8106,-153.97,-157.265,0,-127.163,-130.458,-128.05 0|0:31:21,2,0,7:21:840:2,0,7:76,0,275:-16.3339,-16.4218,-85.035,-22.6556,-85.6371,-91.8687,0,-63.023,-69.2544,-67.1472 dDocent_Contig_15680 13 . C T 402.787 . AB=0.0666667;ABP=76.4061;AC=2;AF=0.333333;AN=6;AO=5;CIGAR=1X1M1X;DP=67;DPB=67;DPRA=0;EPP=13.8677;EPPR=105.07;GTI=0;LEN=1;MEANALT=1.5;MQM=60;MQMR=60;NS=3;NUMALT=2;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=193;QR=1848;RO=47;RPL=0;RPP=13.8677;RPPR=105.07;RPR=5;RUN=1;SAF=5;SAP=13.8677;SAR=0;SRF=47;SRP=105.07;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|0:45:32,3,10:32:1250:3,10:117,407:-23.9536,-23.973,-125.813,0,-93.1384,-99.7455 1|1:2:0,2,0:0:0:2,0:76,0:-7.21481,-0.60206,0,-7.21481,-0.60206,-7.21481 0|0:20:15,0,5:15:598:0,5:0,203:-12.6325,-17.1479,-66.387,0,-49.6428,-48.1376 dDocent_Contig_15681 77 . G A 190.308 . AB=0.25;ABP=29.068;AC=3;AF=0.5;AN=6;AO=12;CIGAR=1X;DP=48;DPB=48;DPRA=0;EPP=29.068;EPPR=81.1833;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=416;QR=1198;RO=36;RPL=12;RPP=29.068;RPPR=81.1833;RPR=0;RUN=1;SAF=12;SAP=29.068;SAR=0;SRF=36;SRP=81.1833;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:6:5,1:5:171:1:33:-1.49295,0,-13.9204 0/1:33:25,8:25:817:8:278:-15.424,0,-63.8987 0/1:9:6,3:6:210:3:105:-7.08689,0,-16.5332 dDocent_Contig_15682 1 . N G 105.39 . AB=0;ABP=0;AC=2;AF=1;AN=2;AO=3;CIGAR=1X;DP=3;DPB=3;DPRA=0;EPP=9.52472;EPPR=0;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=0;NS=1;NUMALT=1;ODDS=6.68461;PAIRED=1;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=113;QR=0;RO=0;RPL=0;RPP=9.52472;RPPR=0;RPR=3;RUN=1;SAF=3;SAP=9.52472;SAR=0;SRF=0;SRP=0;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL ./.:.:.:.:.:.:.:. 1/1:3:0,3:0:0:3:113:-10.5384,-0.90309,0 ./.:.:.:.:.:.:.:. dDocent_Contig_15684 39 . A G 419.762 . AB=0.266667;ABP=10.1038;AC=1;AF=0.166667;AN=6;AO=4;CIGAR=1X1M1X;DP=50;DPB=50;DPRA=0;EPP=11.6962;EPPR=68.1545;GTI=0;LEN=1;MEANALT=2;MQM=60;MQMR=60;NS=3;NUMALT=2;ODDS=6.93889e-18;PAIRED=0;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=154;QR=1163;RO=30;RPL=0;RPP=11.6962;RPPR=68.1545;RPR=4;RUN=1;SAF=4;SAP=11.6962;SAR=0;SRF=30;SRP=68.1545;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|0:23:14,0,9:14:553:0,9:0,366:-26.3815,-30.5959,-76.0954,0,-45.9012,-43.1919 0|0:12:8,0,4:8:303:0,4:0,157:-10.8955,-13.3038,-38.1346,0,-25.2184,-24.0143 0|1:15:8,4,3:8:307:4,3:154,122:-10.2217,0,-23.9784,-2.55745,-15.1131,-26.8526 dDocent_Contig_15686 126 . A T 41.0233 . AB=0.272727;ABP=7.94546;AC=1;AF=0.166667;AN=6;AO=3;CIGAR=1X;DP=25;DPB=25;DPRA=1.57143;EPP=9.52472;EPPR=50.7827;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=99;QR=587;RO=22;RPL=0;RPP=9.52472;RPPR=50.7827;RPR=3;RUN=1;SAF=0;SAP=9.52472;SAR=3;SRF=0;SRP=50.7827;SRR=22;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:4:4,0:4:101:0:0:0,-1.20412,-9.34086 0/0:10:10,0:10:275:0:0:0,-3.0103,-25.0209 0/1:11:8,3:8:211:3:99:-5.92611,0,-15.9403 dDocent_Contig_15687 55 . C T 32.8396 . AB=0.25;ABP=7.35324;AC=1;AF=0.166667;AN=6;AO=2;CIGAR=1X;DP=20;DPB=20;DPRA=1.33333;EPP=7.35324;EPPR=42.0968;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=76;QR=676;RO=18;RPL=2;RPP=7.35324;RPPR=42.0968;RPR=0;RUN=1;SAF=2;SAP=7.35324;SAR=0;SRF=18;SRP=42.0968;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:8:6,2:6:243:2:76:-4.80643,0,-19.8394 0/0:9:9,0:9:313:0:0:0,-2.70927,-28.4926 0/0:3:3,0:3:120:0:0:0,-0.90309,-11.1873 dDocent_Contig_15688 42 . A G 170.96 . AB=0.304348;ABP=10.6577;AC=1;AF=0.166667;AN=6;AO=7;CIGAR=1X;DP=47;DPB=47;DPRA=1.91667;EPP=18.2106;EPPR=89.8692;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=0.85;PAO=0;PQA=0;PQR=0;PRO=0;QA=283;QR=1589;RO=40;RPL=0;RPP=18.2106;RPPR=89.8692;RPR=7;RUN=1;SAF=7;SAP=18.2106;SAR=0;SRF=40;SRP=89.8692;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:15:15,0:15:605:0:0:0,-4.51545,-54.7893 0/1:23:16,7:16:619:7:283:-18.9199,0,-49.1156 0/0:9:9,0:9:365:0:0:0,-2.70927,-33.2149 dDocent_Contig_15689 40 . C T 67.7044 . AB=0.185185;ABP=26.2531;AC=2;AF=0.333333;AN=6;AO=7;CIGAR=1X;DP=52;DPB=52;DPRA=0;EPP=18.2106;EPPR=100.727;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=3.46945e-18;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=275;QR=1789;RO=45;RPL=0;RPP=18.2106;RPPR=100.727;RPR=7;RUN=1;SAF=7;SAP=18.2106;SAR=0;SRF=45;SRP=100.727;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:25:21,4:21:838:4:157:-6.98305,0,-68.2117 0/1:2:1,1:1:39:1:39:-3.2945,0,-3.2945 0/0:25:23,2:23:912:2:79:0,-0.0281184,-74.8935 dDocent_Contig_15690 29 . T C 550.868 . AB=0.182927;ABP=146.222;AC=3;AF=0.5;AN=6;AO=30;CIGAR=1X;DP=164;DPB=164;DPRA=0;EPP=68.1545;EPPR=293.988;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=1210;QR=5357;RO=134;RPL=0;RPP=68.1545;RPPR=293.988;RPR=30;RUN=1;SAF=30;SAP=68.1545;SAR=0;SRF=134;SRP=293.988;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:110:94,16:94:3768:16:643:-25.0906,0,-306.009 0/1:13:7,6:7:284:6:240:-18.0611,0,-22.0206 0/1:41:33,8:33:1305:8:327:-17.4579,0,-105.373 dDocent_Contig_15691 16 . C T 133.17 . AB=0.183673;ABP=45.5977;AC=3;AF=0.5;AN=6;AO=9;CIGAR=1X;DP=49;DPB=49;DPRA=0;EPP=22.5536;EPPR=73.366;GTI=0;LEN=1;MEANALT=1;MQM=52.8889;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=0;PAIREDR=0.725;PAO=0;PQA=0;PQR=0;PRO=0;QA=365;QR=1581;RO=40;RPL=0;RPP=22.5536;RPPR=89.8692;RPR=9;RUN=1;SAF=9;SAP=22.5536;SAR=0;SRF=38;SRP=73.366;SRR=2;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:21:18,3:18:709:3:122:-4.93029,0,-57.8062 0/1:9:7,2:7:272:2:81:-4.97646,0,-22.1334 0/1:19:15,4:15:600:4:162:-8.93284,0,-48.6167 dDocent_Contig_15693 7 . A G 1540.52 . AB=0.323077;ABP=20.6827;AC=2;AF=0.333333;AN=6;AO=21;CIGAR=2X;DP=77;DPB=77;DPRA=0;EPP=48.6112;EPPR=33.4109;GTI=0;LEN=1;MEANALT=2;MQM=60;MQMR=60;NS=3;NUMALT=2;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=655;QR=516;RO=14;RPL=0;RPP=48.6112;RPPR=33.4109;RPR=21;RUN=1;SAF=21;SAP=48.6112;SAR=0;SRF=14;SRP=33.4109;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 1|0:54:8,20,26:8:292:20,26:616,998:-105.044,-58.0856,-75.9141,-25.4892,0,-41.5322 1|0:11:0,1,10:0:0:1,10:39,388:-35.4736,-32.2676,-31.9666,-3.59553,0,-0.585234 0|0:12:6,0,6:6:224:0,6:0,232:-17.6366,-19.4427,-37.776,0,-18.7129,-16.9068 dDocent_Contig_15694 36 . C A 483.023 . 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AB=0.318182;ABP=28.2783;AC=2;AF=0.5;AN=4;AO=28;CIGAR=1X;DP=88;DPB=88;DPRA=0;EPP=63.8115;EPPR=133.299;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=2;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=1121;QR=2420;RO=60;RPL=0;RPP=63.8115;RPPR=133.299;RPR=28;RUN=1;SAF=28;SAP=63.8115;SAR=0;SRF=60;SRP=133.299;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL ./.:.:.:.:.:.:.:. 0/1:32:27,5:27:1089:5:201:-8.83793,0,-88.664 0/1:56:33,23:33:1331:23:920:-66.2456,0,-103.19 dDocent_Contig_15700 68 . T C 50.7768 . 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AB=0.354839;ABP=8.68415;AC=2;AF=0.333333;AN=6;AO=11;CIGAR=1X;DP=37;DPB=37;DPRA=2.58333;EPP=26.8965;EPPR=59.4686;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=1.73472e-18;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=409;QR=1012;RO=26;RPL=0;RPP=26.8965;RPPR=59.4686;RPR=11;RUN=1;SAF=11;SAP=26.8965;SAR=0;SRF=26;SRP=59.4686;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:6:6,0:6:240:0:0:0,-1.80618,-21.9745 0/1:24:17,7:17:657:7:249:-15.5177,0,-52.2357 0/1:7:3,4:3:115:4:160:-12.6762,0,-8.616 dDocent_Contig_15704 16 . T C 140.181 . 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A G 158.825 . 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A G 1696.44 . AB=0.113208;ABP=140.755;AC=4;AF=0.666667;AN=6;AO=12;CIGAR=1X7M1X;DP=167;DPB=167;DPRA=0;EPP=29.068;EPPR=52.9542;GTI=0;LEN=1;MEANALT=9;MQM=59.9167;MQMR=60;NS=3;NUMALT=8;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=430;QR=882;RO=23;RPL=0;RPP=29.068;RPPR=52.9542;RPR=12;RUN=1;SAF=12;SAP=29.068;SAR=0;SRF=23;SRP=52.9542;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|0:61:15,5,0,9,0,1,0,14,6:15:583:5,0,9,0,1,0,14,6:193,0,285,0,39,0,547,237:-40.4645,-29.1272,-75.5383,-44.98,-77.0434,-92.8949,-22.066,-54.1279,-69.9787,-67.2694,-44.98,-77.0434,-92.8949,-69.9787,-92.8949,-41.7735,-73.8372,-89.6887,-66.7726,-89.6887,-89.3876,-44.98,-77.0434,-92.8949,-69.9787,-92.8949,-89.6887,-92.8949,0,-32.0679,-47.9206,-25.0063,-47.9206,-44.7141,-47.9206,-43.7062,-25.4741,-57.5391,-73.391,-50.4754,-73.391,-70.1847,-73.391,-28.4148,-71.5848 1|1:47:2,1,3,21,9,0,4,4,0:2:76:1,3,21,9,0,4,4,0:40,89,691,332,0,157,117,0:-76.1591,-73.4646,-79.3985,-69.6601,-72.5984,-74.9919,-20.9291,-23.8677,-20.0673,-20.8435,-49.6017,-52.5405,-48.7365,0,-53.1282,-76.7611,-79.6995,-75.8949,-27.1652,-55.8375,-82.996,-63.8433,-66.7818,-62.9774,-14.2437,-42.9178,-70.0785,-68.8744,-67.4457,-70.3841,-66.5801,-17.8546,-46.5223,-73.6806,-60.763,-72.4765,-76.7611,-79.6995,-75.8949,-27.1652,-55.8375,-82.996,-70.0785,-73.6806,-82.996 1|1:59:6,12,0,17,3,3,4,3,5:6:223:12,0,17,3,3,4,3,5:457,0,514,98,114,160,117,199:-58.5428,-22.8537,-37.4944,-60.349,-41.1068,-78.5999,-19.2416,0,-37.491,-32.3734,-52.4375,-33.1951,-70.6885,-29.5814,-69.7854,-50.9987,-31.7558,-69.25,-28.1416,-61.3385,-68.3469,-47.1645,-27.9211,-65.4161,-24.3073,-57.5046,-56.0658,-64.212,-50.7292,-31.4863,-68.9806,-27.872,-61.0692,-59.6305,-55.7964,-68.0775,-43.9577,-24.714,-62.2095,-21.1008,-54.298,-52.8592,-49.025,-52.5897,-60.7044 dDocent_Contig_15711 148 . C A 176.963 . AB=0.203704;ABP=44.1879;AC=3;AF=0.5;AN=6;AO=11;CIGAR=1X;DP=54;DPB=54;DPRA=0;EPP=26.8965;EPPR=96.3836;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=426;QR=1697;RO=43;RPL=0;RPP=26.8965;RPPR=96.3836;RPR=11;RUN=1;SAF=0;SAP=26.8965;SAR=11;SRF=0;SRP=96.3836;SRR=43;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:28:24,4:24:948:4:164:-6.72106,0,-77.1908 0/1:3:2,1:2:81:1:37:-2.79474,0,-6.78264 0/1:23:17,6:17:668:6:225:-13.6808,0,-53.5222 dDocent_Contig_15712 35 . A T 67.0239 . AB=0.142857;ABP=49.5419;AC=2;AF=0.333333;AN=6;AO=6;CIGAR=1X;DP=51;DPB=51;DPRA=2.33333;EPP=16.0391;EPPR=100.727;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=0.977778;PAO=0;PQA=0;PQR=0;PRO=0;QA=245;QR=1798;RO=45;RPL=0;RPP=16.0391;RPPR=100.727;RPR=6;RUN=1;SAF=6;SAP=16.0391;SAR=0;SRF=45;SRP=100.727;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:25:21,4:21:840:4:163:-7.53268,0,-68.3897 0/1:17:15,2:15:598:2:82:-2.66217,0,-49.0407 0/0:9:9,0:9:360:0:0:0,-2.70927,-32.7614 dDocent_Contig_15713 50 . A G 171.313 . AB=0.25;ABP=24.725;AC=3;AF=0.5;AN=6;AO=10;CIGAR=1X;DP=40;DPB=40;DPRA=0;EPP=24.725;EPPR=68.1545;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=372;QR=1201;RO=30;RPL=10;RPP=24.725;RPPR=68.1545;RPR=0;RUN=1;SAF=10;SAP=24.725;SAR=0;SRF=30;SRP=68.1545;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:19:17,2:17:684:2:82:-2.06011,0,-56.17 0/1:12:10,2:10:398:2:69:-2.94018,0,-32.5646 0/1:9:3,6:3:119:6:221:-17.5305,0,-8.38523 dDocent_Contig_15714 19 . T C 71.8261 . AB=0.15;ABP=45.5712;AC=2;AF=0.333333;AN=6;AO=6;CIGAR=1X;DP=55;DPB=55;DPRA=1.33333;EPP=16.0391;EPPR=84.9501;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=54.898;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=0.877551;PAO=0;PQA=0;PQR=0;PRO=0;QA=244;QR=1968;RO=49;RPL=0;RPP=16.0391;RPPR=109.412;RPR=6;RUN=1;SAF=6;SAP=16.0391;SAR=0;SRF=46;SRP=84.9501;SRR=3;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:30:26,4:26:1041:4:162:-5.93585,0,-81.1568 0/1:10:8,2:8:326:2:82:-4.76938,0,-22.5081 0/0:15:15,0:15:601:0:0:0,-4.51545,-50.3512 dDocent_Contig_15715 13 . C G 3986.85 . AB=0.075;ABP=128.521;AC=1;AF=0.166667;AN=6;AO=6;CIGAR=1X2M1X3M;DP=172;DPB=172;DPRA=0;EPP=16.0391;EPPR=32.8939;GTI=0;LEN=1;MEANALT=4;MQM=60;MQMR=54.7619;NS=3;NUMALT=4;ODDS=0;PAIRED=1;PAIREDR=0.904762;PAO=0;PQA=0;PQR=0;PRO=0;QA=230;QR=831;RO=21;RPL=0;RPP=16.0391;RPPR=48.6112;RPR=6;RUN=1;SAF=6;SAP=16.0391;SAR=0;SRF=19;SRP=32.8939;SRR=2;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|0:92:6,0,0,24,62:6:234:0,0,24,62:0,0,967,2497:-266.945,-268.751,-285.549,-268.751,-285.549,-285.549,-189.051,-205.848,-205.848,-198.623,-62.9565,-79.7467,-79.7467,0,-61.0829 1|0:12:0,3,2,2,5:0:0:3,2,2,5:120,81,81,204:-26.7166,-16.8331,-15.93,-20.0375,-10.1544,-19.4354,-20.0375,-10.1544,-13.3583,-19.4354,-9.88312,0,-3.20312,-3.20312,-8.37797 0|0:68:15,3,0,14,35:15:597:3,0,14,35:110,0,537,1397:-110.545,-106.071,-151.621,-115.06,-152.525,-161.514,-70.9986,-108.461,-117.45,-113.236,0,-37.4662,-46.4554,-2.38766,-35.9193 dDocent_Contig_15716 5 . T C 105.331 . AB=0.230769;ABP=11.1951;AC=3;AF=0.5;AN=6;AO=6;CIGAR=1X;DP=35;DPB=35;DPRA=0;EPP=16.0391;EPPR=57.5966;GTI=0;LEN=1;MEANALT=1;MQM=59.6667;MQMR=59.4483;NS=3;NUMALT=1;ODDS=1.73472e-18;PAIRED=0;PAIREDR=0.931034;PAO=0;PQA=0;PQR=0;PRO=0;QA=205;QR=1121;RO=29;RPL=0;RPP=16.0391;RPPR=65.983;RPR=6;RUN=1;SAF=0;SAP=16.0391;SAR=6;SRF=28;SRP=57.5966;SRR=1;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:20:19,1:19:733:1:35:0,-2.52197,-62.7564 1/1:2:0,2:0:0:2:65:-6.17284,-0.60206,0 0/1:13:10,3:10:388:3:105:-5.88277,0,-31.3645 dDocent_Contig_15717 15 . G A 54.0774 . AB=0.153846;ABP=30.0702;AC=1;AF=0.166667;AN=6;AO=4;CIGAR=1X;DP=60;DPB=60;DPRA=1.52941;EPP=11.6962;EPPR=124.613;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=0.910714;PAO=0;PQA=0;PQR=0;PRO=0;QA=163;QR=2272;RO=56;RPL=0;RPP=11.6962;RPPR=124.613;RPR=4;RUN=1;SAF=4;SAP=11.6962;SAR=0;SRF=56;SRP=124.613;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:14:14,0:14:567:0:0:0,-4.21442,-51.372 0/1:26:22,4:22:891:4:163:-7.23165,0,-72.6704 0/0:20:20,0:20:814:0:0:0,-6.0206,-73.5741 dDocent_Contig_15719 23 . T C 260.655 . AB=0.34375;ABP=9.79615;AC=3;AF=0.5;AN=6;AO=11;CIGAR=1X;DP=32;DPB=32;DPRA=0;EPP=26.8965;EPPR=48.6112;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=442;QR=834;RO=21;RPL=0;RPP=26.8965;RPPR=48.6112;RPR=11;RUN=1;SAF=11;SAP=26.8965;SAR=0;SRF=21;SRP=48.6112;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:17:13,4:13:520:4:163:-9.94092,0,-42.0284 0/1:7:6,1:6:232:1:39:-1.78935,0,-19.139 0/1:8:2,6:2:82:6:240:-19.5663,0,-5.37144 dDocent_Contig_15720 7 . A C 64.8609 . AB=0.25;ABP=11.6962;AC=1;AF=0.166667;AN=6;AO=4;CIGAR=1X;DP=45;DPB=45;DPRA=1.10345;EPP=11.6962;EPPR=92.0407;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=142;QR=1573;RO=41;RPL=0;RPP=11.6962;RPPR=92.0407;RPR=4;RUN=1;SAF=4;SAP=11.6962;SAR=0;SRF=41;SRP=92.0407;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:24:24,0:24:930:0:0:0,-7.22472,-84.0168 0/0:5:5,0:5:195:0:0:0,-1.50515,-17.9242 0/1:16:12,4:12:448:4:142:-8.30996,0,-35.8475 dDocent_Contig_15721 22 . A G 1227.25 . AB=0.139241;ABP=92.3155;AC=4;AF=0.666667;AN=6;AO=11;CIGAR=2X4M2X;DP=79;DPB=79;DPRA=0;EPP=26.8965;EPPR=42.0968;GTI=0;LEN=1;MEANALT=3.33333;MQM=60;MQMR=60;NS=3;NUMALT=3;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=426;QR=717;RO=18;RPL=0;RPP=26.8965;RPPR=42.0968;RPR=11;RUN=1;SAF=11;SAP=26.8965;SAR=0;SRF=18;SRP=42.0968;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|1:38:6,4,23,4:6:240:4,23,4:157,917,158:-73.7117,-62.606,-81.1721,0,-6.86107,-12.8484,-62.5165,-69.375,-6.77096,-81.0826 1|1:13:2,2,6,3:2:80:2,6,3:77,231,116:-21.2931,-15.5729,-21.5634,-2.93157,-3.20509,-7.71931,-12.3668,-12.638,0,-18.0566 0|1:28:10,3,11,4:10:397:3,11,4:116,440,152:-33.2429,-26.7269,-58.5078,0,-23.1647,-29.38,-23.7918,-46.9486,-20.2295,-55.2706 dDocent_Contig_15722 7 . A G 1850.93 . AB=0.680412;ABP=30.4335;AC=3;AF=0.5;AN=6;AO=66;CIGAR=1X3M1X2M1X3M;DP=97;DPB=97;DPRA=0;EPP=146.327;EPPR=37.7539;GTI=0;LEN=1;MEANALT=3.33333;MQM=60;MQMR=60;NS=3;NUMALT=3;ODDS=0;PAIRED=0;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=2394;QR=624;RO=16;RPL=0;RPP=146.327;RPPR=37.7539;RPR=66;RUN=1;SAF=66;SAP=146.327;SAR=0;SRF=16;SRP=37.7539;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|1:36:5,0,27,2:5:196:0,27,2:0,939,79:-74.8362,-76.3414,-92.466,0,-16.1459,-8.01804,-69.8371,-85.9626,-9.63777,-85.3606 0|1:37:4,0,30,3:4:156:0,30,3:0,1115,117:-90.0276,-91.2317,-104.057,0,-12.8231,-3.79216,-81.6129,-94.4381,-3.20588,-93.535 0|1:24:7,2,9,5:7:272:2,9,5:79,340,201:-25.7493,-21.3543,-43.1046,0,-15.847,-19.6393,-11.2854,-27.1377,-5.77904,-32.135 dDocent_Contig_15723 39 . C A 1058.42 . AB=0.472441;ABP=3.84811;AC=3;AF=0.5;AN=6;AO=60;CIGAR=1X;DP=127;DPB=127;DPRA=0;EPP=133.299;EPPR=148.499;GTI=0;LEN=1;MEANALT=1;MQM=28.0833;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=2395;QR=2673;RO=67;RPL=0;RPP=133.299;RPPR=148.499;RPR=60;RUN=1;SAF=60;SAP=133.299;SAR=0;SRF=67;SRP=148.499;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:89:52,37:52:2068:37:1481:-65.9449,0,-159.519 0/1:10:2,8:2:82:8:322:-16.5518,0,-4.76938 0/1:28:13,15:13:523:15:592:-28.8678,0,-38.9874 dDocent_Contig_15724 26 . A G 49.4934 . AB=0.1875;ABP=16.582;AC=1;AF=0.25;AN=4;AO=3;CIGAR=1X;DP=30;DPB=30;DPRA=1.14286;EPP=9.52472;EPPR=61.6401;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=2;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=123;QR=1071;RO=27;RPL=0;RPP=9.52472;RPPR=61.6401;RPR=3;RUN=1;SAF=3;SAP=9.52472;SAR=0;SRF=27;SRP=61.6401;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:16:13,3:13:517:3:123:-6.64831,0,-42.0608 ./.:.:.:.:.:.:.:. 0/0:14:14,0:14:554:0:0:0,-4.21442,-50.2001 dDocent_Contig_15726 140 . T A 33.1951 . AB=0.136364;ABP=28.2783;AC=1;AF=0.166667;AN=6;AO=3;CIGAR=1X;DP=35;DPB=35;DPRA=3.38462;EPP=9.52472;EPPR=72.4974;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=123;QR=1271;RO=32;RPL=0;RPP=9.52472;RPPR=72.4974;RPR=3;RUN=1;SAF=0;SAP=9.52472;SAR=3;SRF=0;SRP=72.4974;SRR=32;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:22:19,3:19:749:3:123:-4.84213,0,-61.1045 0/0:8:8,0:8:324:0:0:0,-2.40824,-29.5292 0/0:5:5,0:5:198:0:0:0,-1.50515,-18.1965 dDocent_Contig_15727 12 . G A 2471.43 . AB=0.686441;ABP=38.6372;AC=3;AF=0.5;AN=6;AO=81;CIGAR=1X;DP=118;DPB=118;DPRA=0;EPP=178.9;EPPR=83.3548;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=3193;QR=1499;RO=37;RPL=0;RPP=178.9;RPPR=83.3548;RPR=81;RUN=1;SAF=81;SAP=178.9;SAR=0;SRF=37;SRP=83.3548;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:71:22,49:22:889:49:1930:-152.532,0,-58.9436 0/1:6:3,3:3:122:3:102:-7.70753,0,-9.56631 0/1:41:12,29:12:488:29:1161:-92.4267,0,-31.9287 dDocent_Contig_15728 16 . A G 3323.73 . AB=0.11875;ABP=205.012;AC=0;AF=0;AN=6;AO=19;CIGAR=2X;DP=165;DPB=165;DPRA=0;EPP=44.2683;EPPR=87.6977;GTI=0;LEN=1;MEANALT=2;MQM=60;MQMR=60;NS=3;NUMALT=2;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=748;QR=1553;RO=39;RPL=0;RPP=44.2683;RPPR=87.6977;RPR=19;RUN=1;SAF=19;SAP=44.2683;SAR=0;SRF=39;SRP=87.6977;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|0:130:28,15,87:28:1108:15,87:590,3455:-275.981,-235.881,-322.547,0,-42.6554,-64.9938 0|0:5:2,0,3:2:82:0,3:0,123:-9.95964,-10.5617,-17.3299,0,-7.17762,-6.27453 0|0:30:9,4,17:9:363:4,17:158,665:-51.9559,-41.6629,-70.3846,0,-16.9284,-24.8099 dDocent_Contig_15729 25 . T G 132.275 . AB=0.25;ABP=26.8965;AC=3;AF=0.5;AN=6;AO=11;CIGAR=1X2M1X1M2X;DP=44;DPB=44;DPRA=0;EPP=26.8965;EPPR=70.3259;GTI=0;LEN=1;MEANALT=1.66667;MQM=31.2727;MQMR=60;NS=3;NUMALT=1;ODDS=3.46945e-18;PAIRED=0;PAIREDR=0.806452;PAO=0;PQA=0;PQR=0;PRO=0;QA=426;QR=1231;RO=31;RPL=0;RPP=26.8965;RPPR=70.3259;RPR=11;RUN=1;SAF=11;SAP=26.8965;SAR=0;SRF=31;SRP=70.3259;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|1:23:17,6:17:677:6:233:-9.58157,0,-54.34 0|1:5:1,3:1:41:3:115:-7.10943,0,-2.48099 0|1:16:13,2:13:513:2:78:-1.03772,0,-41.5949 dDocent_Contig_15730 12 . G A 77.5054 . AB=0.235294;ABP=13.3567;AC=1;AF=0.166667;AN=6;AO=4;CIGAR=1X;DP=92;DPB=92;DPRA=0.453333;EPP=11.6962;EPPR=194.1;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=1.73472e-18;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=159;QR=3521;RO=88;RPL=0;RPP=11.6962;RPPR=194.1;RPR=4;RUN=1;SAF=4;SAP=11.6962;SAR=0;SRF=88;SRP=194.1;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:57:57,0:57:2290:0:0:0,-17.1587,-206.257 0/0:18:18,0:18:705:0:0:0,-5.41854,-63.7709 0/1:17:13,4:13:526:4:159:-9.57444,0,-42.5695 dDocent_Contig_15731 26 . G A 376.172 . AB=0.365854;ABP=9.41879;AC=2;AF=0.333333;AN=6;AO=17;CIGAR=1X;DP=68;DPB=68;DPRA=0;EPP=39.9253;EPPR=113.755;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=664;QR=2020;RO=51;RPL=0;RPP=39.9253;RPPR=113.755;RPR=17;RUN=1;SAF=17;SAP=39.9253;SAR=0;SRF=51;SRP=113.755;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:36:23,13:23:905:13:504:-34.8653,0,-70.9147 0/1:5:3,2:3:114:2:82:-6.27453,0,-9.12666 0/0:27:25,2:25:1001:2:78:0,-0.724509,-82.9837 dDocent_Contig_15733 109 . A C 62.6943 . AB=0.217391;ABP=18.9659;AC=1;AF=0.166667;AN=6;AO=7;CIGAR=1X;DP=60;DPB=60;DPRA=3.25;EPP=18.2106;EPPR=118.098;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=230;QR=1751;RO=53;RPL=0;RPP=18.2106;RPPR=118.098;RPR=7;RUN=1;SAF=0;SAP=18.2106;SAR=7;SRF=0;SRP=118.098;SRR=53;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:23:18,5:18:569:5:160:-7.79229,0,-44.5875 0/0:8:8,0:8:274:0:0:0,-2.40824,-24.9937 0/0:29:27,2:27:908:2:70:0,-2.08247,-75.3809 dDocent_Contig_15734 24 . C T 38.085 . AB=0.121951;ABP=53.9075;AC=2;AF=0.333333;AN=6;AO=5;CIGAR=1X;DP=86;DPB=86;DPRA=0.455556;EPP=13.8677;EPPR=176.728;GTI=0;LEN=1;MEANALT=1.5;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=203;QR=3150;RO=80;RPL=0;RPP=13.8677;RPPR=176.728;RPR=5;RUN=1;SAF=5;SAP=13.8677;SAR=0;SRF=80;SRP=176.728;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:45:45,0:45:1808:0:0:0,-13.5463,-162.928 0/1:10:9,1:9:354:1:40:-0.985379,0,-29.2094 0/1:31:26,4:26:988:4:163:-5.61857,0,-79.7642 dDocent_Contig_15735 25 . T G 34.0095 . AB=0.111111;ABP=62.1226;AC=1;AF=0.166667;AN=6;AO=5;CIGAR=1X;DP=86;DPB=86;DPRA=2.19512;EPP=13.8677;EPPR=178.9;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=0.987654;PAO=0;PQA=0;PQR=0;PRO=0;QA=201;QR=3034;RO=81;RPL=0;RPP=13.8677;RPPR=178.9;RPR=5;RUN=1;SAF=5;SAP=13.8677;SAR=0;SRF=81;SRP=178.9;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:45:40,5:40:1511:5:201:-4.92366,0,-122.696 0/0:24:24,0:24:895:0:0:0,-7.22472,-80.8539 0/0:17:17,0:17:628:0:0:0,-5.11751,-56.8417 dDocent_Contig_15736 81 . C T 42.4507 . AB=0.230769;ABP=11.1951;AC=1;AF=0.166667;AN=6;AO=3;CIGAR=1X;DP=33;DPB=33;DPRA=1.3;EPP=9.52472;EPPR=68.1545;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=107;QR=1027;RO=30;RPL=3;RPP=9.52472;RPPR=68.1545;RPR=0;RUN=1;SAF=3;SAP=9.52472;SAR=0;SRF=30;SRP=68.1545;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:17:17,0:17:582:0:0:0,-5.11751,-52.7031 0/0:3:3,0:3:96:0:0:0,-0.90309,-8.95728 0/1:13:10,3:10:349:3:107:-6.06878,0,-27.8334 dDocent_Contig_15737 43 . A T 86.3951 . AB=0.15873;ABP=66.7413;AC=2;AF=0.333333;AN=6;AO=12;CIGAR=2X;DP=171;DPB=171;DPRA=0;EPP=29.068;EPPR=343.931;GTI=0;LEN=1;MEANALT=1.66667;MQM=60;MQMR=59.4268;NS=3;NUMALT=1;ODDS=0;PAIRED=0;PAIREDR=0.089172;PAO=0;PQA=0;PQR=0;PRO=0;QA=384;QR=4491;RO=157;RPL=0;RPP=29.068;RPPR=343.931;RPR=12;RUN=1;SAF=0;SAP=29.068;SAR=12;SRF=0;SRP=343.931;SRR=157;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|0:108:105,2:105:3014:2:63:0,-26.3781,-265.427 0|1:10:8,1:8:230:1:31:-0.200212,0,-18.1809 0|1:53:44,9:44:1247:9:290:-10.4611,0,-96.5431 dDocent_Contig_15738 12 . C A 1297.89 . AB=0.33557;ABP=38.0016;AC=3;AF=0.5;AN=6;AO=50;CIGAR=1X;DP=149;DPB=149;DPRA=0;EPP=111.584;EPPR=217.986;GTI=0;LEN=1;MEANALT=1;MQM=59.66;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=0.98;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=1993;QR=3998;RO=99;RPL=0;RPP=111.584;RPPR=217.986;RPR=50;RUN=1;SAF=50;SAP=111.584;SAR=0;SRF=99;SRP=217.986;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:72:50,22:50:2022:22:863:-56.1046,0,-160.49 0/1:26:18,8:18:721:8:325:-21.7926,0,-57.3879 0/1:51:31,20:31:1255:20:805:-57.4148,0,-97.8647 dDocent_Contig_15739 27 . T C 427.691 . AB=0.171642;ABP=128.502;AC=1;AF=0.166667;AN=6;AO=30;CIGAR=1X;DP=270;DPB=270;DPRA=0;EPP=68.1545;EPPR=524.164;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=0.995833;PAO=0;PQA=0;PQR=0;PRO=0;QA=1212;QR=9509;RO=240;RPL=0;RPP=68.1545;RPPR=524.164;RPR=30;RUN=1;SAF=30;SAP=68.1545;SAR=0;SRF=240;SRP=524.164;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:134:111,23:111:4441:23:937:-44.292,0,-359.294 0/0:76:73,3:73:2876:3:120:0,-11.6904,-247.756 0/0:60:56,4:56:2192:4:155:0,-3.73704,-183.134 dDocent_Contig_15740 14 . C T 144.02 . AB=0;ABP=0;AC=2;AF=0.333333;AN=6;AO=4;CIGAR=2X2M1X;DP=18;DPB=18;DPRA=0.769231;EPP=11.6962;EPPR=31.2394;GTI=0;LEN=1;MEANALT=2;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=158;QR=519;RO=13;RPL=0;RPP=11.6962;RPPR=31.2394;RPR=4;RUN=1;SAF=4;SAP=11.6962;SAR=0;SRF=13;SRP=31.2394;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|0:7:7,0:7:282:0:0:0,-2.10721,-25.753 1|1:5:0,4:0:0:4:158:-14.2257,-1.20412,0 0|0:6:6,0:6:237:0:0:0,-1.80618,-21.7031 dDocent_Contig_15741 23 . C A 182.102 . AB=0.368421;ABP=5.8675;AC=1;AF=0.166667;AN=6;AO=7;CIGAR=1X;DP=47;DPB=47;DPRA=1.35714;EPP=18.2106;EPPR=89.8692;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=282;QR=1604;RO=40;RPL=0;RPP=18.2106;RPPR=89.8692;RPR=7;RUN=1;SAF=7;SAP=18.2106;SAR=0;SRF=40;SRP=89.8692;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:27:27,0:27:1086:0:0:0,-8.12781,-98.0266 0/0:1:1,0:1:41:0:0:0,-0.30103,-4.09457 0/1:19:12,7:12:477:7:282:-20.0334,0,-37.5571 dDocent_Contig_15742 18 . A C 154.733 . AB=0.1;ABP=30.8051;AC=0;AF=0;AN=6;AO=2;CIGAR=1M1X9M1D9M;DP=121;DPB=117.619;DPRA=0;EPP=7.35324;EPPR=194.1;GTI=0;LEN=1;MEANALT=3;MQM=60;MQMR=60;NS=3;NUMALT=6;ODDS=0;PAIRED=0;PAIREDR=0.806818;PAO=0;PQA=0;PQR=0;PRO=0;QA=70;QR=3454;RO=88;RPL=0;RPP=7.35324;RPPR=194.1;RPR=2;RUN=1;SAF=2;SAP=7.35324;SAR=0;SRF=88;SRP=194.1;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|0:70:52,0,0,4,9,0,2:52:2039:0,0,4,9,0,2:0,0,154,348,0,80:-12.9228,-28.5764,-196.251,-28.5764,-196.251,-196.251,-15.9356,-183.609,-183.609,-182.405,0,-167.671,-167.671,-155.029,-164.962,-28.5764,-196.251,-196.251,-183.609,-167.671,-196.251,-21.9852,-189.661,-189.661,-177.019,-161.08,-189.661,-189.059 0|0:20:15,2,2,0,0,0,0:15:582:2,2,0,0,0,0:78,70,0,0,0,0:-1.91871,0,-47.2588,-0.742711,-42.169,-47.9794,-6.43416,-47.8608,-48.5814,-54.2735,-6.43416,-47.8608,-48.5814,-54.2735,-54.2735,-6.43416,-47.8608,-48.5814,-54.2735,-54.2735,-54.2735,-6.43416,-47.8608,-48.5814,-54.2735,-54.2735,-54.2735,-54.2735 0|0:31:21,1,0,0,1,4,3:21:833:1,0,0,1,4,3:41,0,0,41,150,120:-5.95026,-8.88593,-77.1588,-12.2719,-77.4598,-80.8444,-12.2719,-77.4598,-80.8444,-80.8444,-8.88593,-74.0752,-77.4598,-77.4598,-77.1588,0,-65.1791,-68.5636,-68.5636,-65.1791,-67.3595,-2.38422,-67.5746,-70.9592,-70.9592,-67.5746,-58.6787,-70.0561 dDocent_Contig_15743 54 . A G 301.871 . AB=0.5;ABP=3.0103;AC=1;AF=0.166667;AN=6;AO=11;CIGAR=1X;DP=32;DPB=32;DPRA=4.4;EPP=26.8965;EPPR=48.6112;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=0.952381;PAO=0;PQA=0;PQR=0;PRO=0;QA=422;QR=731;RO=21;RPL=11;RPP=26.8965;RPPR=48.6112;RPR=0;RUN=1;SAF=11;SAP=26.8965;SAR=0;SRF=21;SRP=48.6112;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:22:11,11:11:392:11:422:-31.7096,0,-28.9893 0/0:2:2,0:2:51:0:0:0,-0.60206,-4.8424 0/0:8:8,0:8:288:0:0:0,-2.40824,-26.2668 dDocent_Contig_15744 7 . A C 112.119 . AB=0.0819672;ABP=95.6005;AC=1;AF=0.166667;AN=6;AO=5;CIGAR=2M1X;DP=79;DPB=82.3333;DPRA=0;EPP=13.8677;EPPR=141.985;GTI=0;LEN=1;MEANALT=2;MQM=60;MQMR=55.8281;NS=3;NUMALT=2;ODDS=0;PAIRED=1;PAIREDR=0.546875;PAO=0;PQA=0;PQR=0;PRO=0;QA=195;QR=2462;RO=64;RPL=0;RPP=13.8677;RPPR=141.985;RPR=5;RUN=1;SAF=5;SAP=13.8677;SAR=0;SRF=64;SRP=141.985;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|0:43:33,6,3:33:1271:6,3:233,117:-9.21437,0,-102.041,-9.52931,-94.2285,-112.472 0|1:18:16,0,2:16:617:0,2:0,78:-1.98493,-6.80141,-56.792,0,-50.3793,-49.7772 0|0:18:15,3,0:15:574:3,0:116,0:-5.39916,0,-46.4597,-9.91461,-47.3628,-56.8919 dDocent_Contig_15745 106 . N T 30.4473 . AB=0;ABP=0;AC=2;AF=1;AN=2;AO=2;CIGAR=3X10I2M;DP=2;DPB=6;DPRA=0;EPP=7.35324;EPPR=0;GTI=0;LEN=1;MEANALT=1;MQM=19;MQMR=0;NS=1;NUMALT=1;ODDS=5.99146;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=38;QR=0;RO=0;RPL=0;RPP=7.35324;RPPR=0;RPR=2;RUN=1;SAF=2;SAP=7.35324;SAR=0;SRF=0;SRP=0;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 1|1:2:0,2:0:0:2:38:-3.04325,-0.60206,0 .:.:.:.:.:.:.:. .:.:.:.:.:.:.:. dDocent_Contig_15746 22 . T A 16255.5 . AB=0.83252;ABP=593.654;AC=3;AF=0.5;AN=6;AO=512;CIGAR=1X;DP=615;DPB=615;DPRA=0;EPP=1114.8;EPPR=224.5;GTI=0;LEN=1;MEANALT=1.33333;MQM=57.3438;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=0.826172;PAIREDR=0.95098;PAO=0;PQA=0;PQR=0;PRO=0;QA=20334;QR=4108;RO=102;RPL=0;RPP=1114.8;RPPR=224.5;RPR=512;RUN=1;SAF=512;SAP=1114.8;SAR=0;SRF=102;SRP=224.5;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:382:60,322:60:2414:322:12793:-1028.14,0,-102.412 0/1:64:14,50:14:566:50:2005:-157.758,0,-32.0167 0/1:169:28,140:28:1128:140:5536:-445.171,0,-51.0314 dDocent_Contig_15747 17 . T A 270.45 . AB=0.254902;ABP=29.6215;AC=3;AF=0.5;AN=6;AO=13;CIGAR=1X;DP=51;DPB=51;DPRA=0;EPP=31.2394;EPPR=85.5263;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=501;QR=1419;RO=38;RPL=0;RPP=31.2394;RPPR=85.5263;RPR=13;RUN=1;SAF=13;SAP=31.2394;SAR=0;SRF=38;SRP=85.5263;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:12:11,1:11:409:1:39:-0.284205,0,-33.5393 0/1:23:15,8:15:557:8:309:-21.2422,0,-43.5405 0/1:16:12,4:12:453:4:153:-9.32295,0,-36.3013 dDocent_Contig_15748 28 . C A 57.2753 . AB=0.230769;ABP=11.1951;AC=1;AF=0.166667;AN=6;AO=5;CIGAR=1X;DP=54;DPB=54;DPRA=1.95455;EPP=13.8677;EPPR=109.412;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=202;QR=1936;RO=49;RPL=0;RPP=13.8677;RPPR=109.412;RPR=5;RUN=1;SAF=5;SAP=13.8677;SAR=0;SRF=49;SRP=109.412;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:30:28,2:28:1091:2:79:0,-1.53366,-90.9695 0/1:13:10,3:10:405:3:123:-7.5514,0,-32.8972 0/0:11:11,0:11:440:0:0:0,-3.31133,-39.9553 dDocent_Contig_15749 9 . A G 3534.37 . AB=0.2;ABP=26.4622;AC=0;AF=0;AN=6;AO=6;CIGAR=3M1X2M1X3M1D1M;DP=262;DPB=259.333;DPRA=0;EPP=16.0391;EPPR=224.5;GTI=0;LEN=1;MEANALT=4;MQM=32.3333;MQMR=59.7549;NS=3;NUMALT=3;ODDS=2.77556e-17;PAIRED=0;PAIREDR=0.970588;PAO=0;PQA=0;PQR=0;PRO=0;QA=229;QR=3963;RO=102;RPL=0;RPP=16.0391;RPPR=224.5;RPR=6;RUN=1;SAF=6;SAP=16.0391;SAR=0;SRF=102;SRP=224.5;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|0:143:57,15,0,64:57:2210:15,0,64:557,0,2535:-190.443,-163.639,-340.673,-207.601,-345.188,-389.153,0,-137.605,-181.568,-162.302 0|0:30:8,0,6,14:8:314:0,6,14:0,229,561:-43.7232,-46.1315,-71.9611,-31.2476,-57.0705,-55.2643,0,-25.857,-10.9794,-21.6426 0|0:89:37,8,0,41:37:1439:8,0,41:300,0,1650:-124.794,-112.157,-227.98,-135.932,-230.388,-254.167,0,-94.4703,-118.247,-105.905 dDocent_Contig_15750 33 . G A 96.5302 . AB=0.2;ABP=26.4622;AC=2;AF=0.333333;AN=6;AO=6;CIGAR=1X;DP=62;DPB=62;DPRA=0.46875;EPP=16.0391;EPPR=124.613;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=239;QR=2254;RO=56;RPL=0;RPP=16.0391;RPPR=124.613;RPR=6;RUN=1;SAF=6;SAP=16.0391;SAR=0;SRF=56;SRP=124.613;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:19:17,2:17:676:2:80:-1.87201,0,-55.4509 0/1:11:7,4:7:286:4:159:-11.3806,0,-22.8035 0/0:32:32,0:32:1292:0:0:0,-9.63296,-116.543 dDocent_Contig_15751 25 . T C 1971.98 . AB=0.75;ABP=44.2683;AC=4;AF=0.666667;AN=6;AO=62;CIGAR=1X;DP=81;DPB=81;DPRA=0;EPP=137.642;EPPR=44.2683;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=2474;QR=740;RO=19;RPL=0;RPP=137.642;RPPR=44.2683;RPR=62;RUN=1;SAF=62;SAP=137.642;SAR=0;SRF=19;SRP=44.2683;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:50:13,37:13:499:37:1459:-116.498,0,-30.1862 1/1:5:0,5:0:0:5:204:-18.744,-1.50515,0 0/1:26:6,20:6:241:20:811:-65.4784,0,-14.2397 dDocent_Contig_15752 18 . G A 154.096 . AB=0.25;ABP=18.2106;AC=1;AF=0.166667;AN=6;AO=22;CIGAR=1X;DP=247;DPB=247;DPRA=0;EPP=50.7827;EPPR=491.592;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=892;QR=8851;RO=225;RPL=0;RPP=50.7827;RPPR=491.592;RPR=22;RUN=1;SAF=22;SAP=50.7827;SAR=0;SRF=225;SRP=491.592;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:155:143,12:143:5620:12:490:0,-2.20851,-461.189 0/1:28:21,7:21:817:7:281:-17.2335,0,-65.4159 0/0:64:61,3:61:2414:3:121:0,-7.98572,-206.142 dDocent_Contig_15753 9 . A G 598.458 . AB=0.181818;ABP=51.3749;AC=1;AF=0.166667;AN=6;AO=10;CIGAR=1X1M1X;DP=60;DPB=60;DPRA=5.5;EPP=24.725;EPPR=55.1256;GTI=0;LEN=1;MEANALT=3;MQM=60;MQMR=60;NS=3;NUMALT=3;ODDS=0;PAIRED=0.9;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=316;QR=907;RO=24;RPL=0;RPP=24.725;RPPR=55.1256;RPR=10;RUN=1;SAF=10;SAP=24.725;SAR=0;SRF=24;SRP=55.1256;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|0:31:16,1,10,4:16:602:1,10,4:39,386,121:-26.9286,-28.5374,-77.57,0,-46.1617,-46.3586,-22.086,-68.1998,-39.7016,-70.202 0|0:5:0,0,0,5:0:0:0,0,5:0,0,181:-16.6424,-16.6424,-16.6424,-16.6424,-16.6424,-16.6424,-1.50515,-1.50515,-1.50515,0 0|1:24:8,9,2,5:8:305:9,2,5:277,77,144:-19.7975,0,-22.347,-15.8728,-18.7286,-40.3213,-10.7662,-13.6374,-29.4856,-34.3073 dDocent_Contig_15754 11 . T G 359.895 . AB=0.0769231;ABP=83.8559;AC=2;AF=0.333334;AN=6;AO=4;CIGAR=1X16M;DP=68;DPB=61.8235;DPRA=0;EPP=11.6962;EPPR=70.3259;GTI=0;LEN=1;MEANALT=4;MQM=60;MQMR=60;NS=3;NUMALT=5;ODDS=0;PAIRED=0;PAIREDR=0.645161;PAO=0;PQA=0;PQR=0;PRO=0;QA=161;QR=1182;RO=31;RPL=0;RPP=11.6962;RPPR=70.3259;RPR=4;RUN=1;SAF=4;SAP=11.6962;SAR=0;SRF=31;SRP=70.3259;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|1:16:7,0,4,3,0,0:7:269:0,4,3,0,0:0,159,110,0,0:-10.9922,-13.0994,-35.1775,0,-22.0828,-20.8786,-4.11829,-26.1908,-13.0967,-25.2877,-13.0994,-35.1775,-22.0828,-26.1908,-35.1775,-13.0994,-35.1775,-22.0828,-26.1908,-35.1775,-35.1775 0|1:19:11,1,0,2,2,3:11:418:1,0,2,2,3:40,0,76,79,122:-6.75811,-6.77383,-40.7422,-10.0694,-41.0433,-44.3391,-3.84232,-34.8115,-38.1074,-37.5053,-3.56926,-34.5416,-37.8375,-31.6058,-37.2355,0,-30.9759,-34.2721,-28.0401,-27.7699,-33.3691 0|0:33:13,2,6,11,0,1:13:495:2,6,11,0,1:78,238,345,0,39:-23.762,-21.2592,-61.2717,-8.06465,-42.2742,-46.8826,0,-34.1796,-20.9971,-37.2804,-27.6754,-61.8737,-48.6888,-40.5917,-68.2873,-24.4674,-58.6669,-45.4816,-37.3857,-65.0805,-64.7795 dDocent_Contig_15756 7 . A C 232.012 . AB=0.0902778;ABP=212.98;AC=0;AF=0;AN=6;AO=16;CIGAR=1M1X7M;DP=234;DPB=233.111;DPRA=0;EPP=37.7539;EPPR=411.247;GTI=0;LEN=1;MEANALT=4;MQM=60;MQMR=60;NS=3;NUMALT=3;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=615;QR=7334;RO=188;RPL=0;RPP=37.7539;RPPR=411.247;RPR=16;RUN=1;SAF=16;SAP=37.7539;SAR=0;SRF=188;SRP=411.247;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|0:144:111,1,13,17:111:4330:1,13,17:35,498,689:-23.4157,-53.9836,-409.611,-15.9653,-369.042,-367.976,0,-353.094,-315.072,-350.824 0|0:13:11,2,0,0:11:433:2,0,0:76,0,0:-3.30128,0,-35.4122,-6.61261,-36.0143,-42.2451,-6.61261,-36.0143,-42.2451,-42.2451 0|0:77:66,4,3,4:66:2571:4,3,4:149,117,164:0,-7.68245,-217.779,-10.2507,-209.366,-220.658,-6.32084,-205.446,-208.023,-216.437 dDocent_Contig_15757 92 . G A 61.21 . AB=0.25;ABP=11.6962;AC=1;AF=0.166667;AN=6;AO=7;CIGAR=2X;DP=53;DPB=53;DPRA=6.125;EPP=18.2106;EPPR=102.898;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=242;QR=1557;RO=46;RPL=7;RPP=18.2106;RPPR=102.898;RPR=0;RUN=1;SAF=7;SAP=18.2106;SAR=0;SRF=46;SRP=102.898;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|0:33:30,3:30:1014:3:104:0,-0.230898,-81.8654 0|0:4:4,0:4:138:0:0:0,-1.20412,-12.7604 0|1:16:12,4:12:405:4:138:-7.94397,0,-31.9591 dDocent_Contig_15758 13 . G A 638.49 . AB=0.432432;ABP=4.47751;AC=4;AF=0.666667;AN=6;AO=21;CIGAR=1X;DP=42;DPB=42;DPRA=0;EPP=48.6112;EPPR=48.6112;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=840;QR=837;RO=21;RPL=0;RPP=48.6112;RPPR=48.6112;RPR=21;RUN=1;SAF=21;SAP=48.6112;SAR=0;SRF=21;SRP=48.6112;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:25:10,15:10:403:15:603:-47.0811,0,-29.1043 1/1:5:0,5:0:0:5:199:-18.2886,-1.50515,0 0/1:12:11,1:11:434:1:38:-0.184909,0,-35.7986 dDocent_Contig_15759 23 . T G 33.6853 . AB=0.157895;ABP=22.325;AC=2;AF=0.333333;AN=6;AO=3;CIGAR=1X;DP=59;DPB=59;DPRA=0.2375;EPP=9.52472;EPPR=124.613;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=121;QR=2267;RO=56;RPL=0;RPP=9.52472;RPPR=124.613;RPR=3;RUN=1;SAF=3;SAP=9.52472;SAR=0;SRF=56;SRP=124.613;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:40:40,0:40:1614:0:0:0,-12.0412,-145.485 0/1:11:10,1:10:408:1:41:-0.783237,0,-33.7693 0/1:8:6,2:6:245:2:80:-5.18355,0,-20.0212 dDocent_Contig_15763 144 . G T 48.4269 . AB=0.15625;ABP=35.8538;AC=2;AF=0.333333;AN=6;AO=5;CIGAR=1X;DP=41;DPB=41;DPRA=1.77778;EPP=13.8677;EPPR=81.1833;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=189;QR=1375;RO=36;RPL=0;RPP=13.8677;RPPR=81.1833;RPR=5;RUN=1;SAF=0;SAP=13.8677;SAR=5;SRF=0;SRP=81.1833;SRR=36;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:9:9,0:9:345:0:0:0,-2.70927,-31.4085 0/1:3:1,2:1:28:2:77:-6.40605,0,-1.89664 0/1:29:26,3:26:1002:3:112:-1.71603,0,-81.7617 dDocent_Contig_15764 12 . A C 34.3638 . AB=0.15;ABP=24.2907;AC=1;AF=0.166667;AN=6;AO=3;CIGAR=1X;DP=34;DPB=34;DPRA=2.85714;EPP=9.52472;EPPR=70.3259;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=121;QR=1235;RO=31;RPL=0;RPP=9.52472;RPPR=70.3259;RPR=3;RUN=1;SAF=3;SAP=9.52472;SAR=0;SRF=31;SRP=70.3259;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:13:13,0:13:516:0:0:0,-3.91339,-46.7864 0/0:1:1,0:1:38:0:0:0,-0.30103,-3.79727 0/1:20:17,3:17:681:3:121:-5.25939,0,-55.5973 dDocent_Contig_15765 22 . A C 91.6948 . AB=0.166667;ABP=43.5445;AC=2;AF=0.333333;AN=6;AO=7;CIGAR=1X;DP=48;DPB=48;DPRA=3.5;EPP=18.2106;EPPR=92.0407;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=0.97561;PAO=0;PQA=0;PQR=0;PRO=0;QA=273;QR=1597;RO=41;RPL=0;RPP=18.2106;RPPR=92.0407;RPR=7;RUN=1;SAF=7;SAP=18.2106;SAR=0;SRF=41;SRP=92.0407;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:27:24,3:24:941:3:123:-3.33698,0,-76.8677 0/0:6:6,0:6:236:0:0:0,-1.80618,-21.6119 0/1:15:11,4:11:420:4:150:-9.34875,0,-33.6303 dDocent_Contig_15768 98 . N T 842.312 . AB=0;ABP=0;AC=6;AF=1;AN=6;AO=28;CIGAR=1X;DP=28;DPB=28;DPRA=0;EPP=63.8115;EPPR=0;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=0;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=920;QR=0;RO=0;RPL=28;RPP=63.8115;RPPR=0;RPR=0;RUN=1;SAF=28;SAP=63.8115;SAR=0;SRF=0;SRP=0;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 1/1:16:0,16:0:0:16:543:-49.193,-4.81648,0 1/1:9:0,9:0:0:9:277:-25.2306,-2.70927,0 1/1:3:0,3:0:0:3:100:-9.33037,-0.90309,0 dDocent_Contig_15769 20 . A C 75.3372 . AB=0.375;ABP=4.09604;AC=1;AF=0.166667;AN=6;AO=3;CIGAR=1X;DP=22;DPB=22;DPRA=1.14286;EPP=9.52472;EPPR=44.2683;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=0;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=123;QR=758;RO=19;RPL=0;RPP=9.52472;RPPR=44.2683;RPR=3;RUN=1;SAF=3;SAP=9.52472;SAR=0;SRF=19;SRP=44.2683;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:8:5,3:5:201:3:123:-9.05655,0,-16.0623 0/0:5:5,0:5:202:0:0:0,-1.50515,-18.5621 0/0:9:9,0:9:355:0:0:0,-2.70927,-32.3082 dDocent_Contig_15770 37 . T A 42.2524 . AB=0.173913;ABP=24.253;AC=0;AF=0;AN=6;AO=4;CIGAR=2X2M1X2M4X;DP=47;DPB=46.2727;DPRA=1.91667;EPP=11.6962;EPPR=85.5263;GTI=0;LEN=1;MEANALT=3;MQM=10;MQMR=60;NS=3;NUMALT=3;ODDS=1.73472e-18;PAIRED=0;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=154;QR=1451;RO=38;RPL=0;RPP=11.6962;RPPR=85.5263;RPR=4;RUN=1;SAF=4;SAP=11.6962;SAR=0;SRF=38;SRP=85.5263;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|0:18:18,0,0,0:18:682:0,0,0:0,0,0:0,-5.41854,-61.7077,-5.41854,-61.7077,-61.7077,-5.41854,-61.7077,-61.7077,-61.7077 0|0:6:6,0,0,0:6:237:0,0,0:0,0,0:0,-1.80618,-21.7035,-1.80618,-21.7035,-21.7035,-1.80618,-21.7035,-21.7035,-21.7035 0|0:23:14,2,4,3:14:532:2,4,3:10,154,123:-6.04906,-10.4185,-53.5417,-7.93926,-51.8042,-50.453,0,-43.9784,-41.4933,-42.9369 dDocent_Contig_15771 52 . G C 193.965 . AB=0.285714;ABP=14.1779;AC=1;AF=0.166667;AN=6;AO=8;CIGAR=1X;DP=60;DPB=60;DPRA=1.75;EPP=20.3821;EPPR=115.927;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=322;QR=2052;RO=52;RPL=8;RPP=20.3821;RPPR=115.927;RPR=0;RUN=1;SAF=8;SAP=20.3821;SAR=0;SRF=52;SRP=115.927;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:28:20,8:20:795:8:322:-20.9193,0,-63.4391 0/0:5:5,0:5:200:0:0:0,-1.50515,-18.3795 0/0:27:27,0:27:1057:0:0:0,-8.12781,-95.419 dDocent_Contig_15772 66 . A G 157.899 . AB=0.321429;ABP=10.7656;AC=2;AF=0.333333;AN=6;AO=9;CIGAR=2X;DP=30;DPB=30;DPRA=7;EPP=22.5536;EPPR=48.6112;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=294;QR=726;RO=21;RPL=9;RPP=22.5536;RPPR=48.6112;RPR=0;RUN=1;SAF=9;SAP=22.5536;SAR=0;SRF=21;SRP=48.6112;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|1:22:14,8:14:483:8:262:-17.278,0,-37.1761 0|0:2:2,0:2:68:0:0:0,-0.60206,-6.45788 0|1:6:5,1:5:175:1:32:-1.39313,0,-14.2875 dDocent_Contig_15773 14 . A G 222.665 . AB=0.289474;ABP=17.6392;AC=3;AF=0.5;AN=6;AO=11;CIGAR=1X;DP=38;DPB=38;DPRA=0;EPP=26.8965;EPPR=61.6401;GTI=0;LEN=1;MEANALT=1;MQM=54.7273;MQMR=53.5556;NS=3;NUMALT=1;ODDS=0;PAIRED=0;PAIREDR=0.777778;PAO=0;PQA=0;PQR=0;PRO=0;QA=433;QR=1082;RO=27;RPL=0;RPP=26.8965;RPPR=61.6401;RPR=11;RUN=1;SAF=11;SAP=26.8965;SAR=0;SRF=27;SRP=61.6401;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:19:11,8:11:443:8:313:-22.8149,0,-32.7843 0/1:6:5,1:5:199:1:40:-1.06066,0,-14.815 0/1:13:11,2:11:440:2:80:-2.94248,0,-34.2394 dDocent_Contig_15774 8 . A T 52.2739 . AB=0.666667;ABP=5.9056;AC=1;AF=0.166667;AN=6;AO=11;CIGAR=2X;DP=80;DPB=80;DPRA=0.581081;EPP=26.8965;EPPR=150.67;GTI=0;LEN=1;MEANALT=1;MQM=14.7273;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=0;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=425;QR=2613;RO=68;RPL=0;RPP=26.8965;RPPR=150.67;RPR=11;RUN=1;SAF=11;SAP=26.8965;SAR=0;SRF=68;SRP=150.67;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|0:31:28,3:28:1079:3:116:0,-5.13701,-93.2215 0|1:12:4,8:4:155:8:309:-7.05129,0,-10.7131 0|0:37:36,0:36:1379:0:0:0,-10.8371,-124.279 dDocent_Contig_15775 15 . G T 233.946 . AB=0.285714;ABP=16.9698;AC=1;AF=0.166667;AN=6;AO=10;CIGAR=1X;DP=65;DPB=65;DPRA=2.33333;EPP=24.725;EPPR=122.441;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=59.5636;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=0.890909;PAO=0;PQA=0;PQR=0;PRO=0;QA=390;QR=2145;RO=55;RPL=0;RPP=24.725;RPPR=122.441;RPR=10;RUN=1;SAF=10;SAP=24.725;SAR=0;SRF=55;SRP=122.441;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:35:25,10:25:963:10:390:-24.9175,0,-76.4295 0/0:13:13,0:13:508:0:0:0,-3.91339,-45.5086 0/0:17:17,0:17:674:0:0:0,-5.11751,-60.9906 dDocent_Contig_15776 22 . C T 170.662 . AB=0.28;ABP=13.5202;AC=1;AF=0.166667;AN=6;AO=7;CIGAR=1X;DP=43;DPB=43;DPRA=2.77778;EPP=18.2106;EPPR=81.1833;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=1.73472e-18;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=286;QR=1437;RO=36;RPL=0;RPP=18.2106;RPPR=81.1833;RPR=7;RUN=1;SAF=7;SAP=18.2106;SAR=0;SRF=36;SRP=81.1833;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:25:18,7:18:735:7:286:-18.5891,0,-58.9465 0/0:7:7,0:7:259:0:0:0,-2.10721,-23.6545 0/0:11:11,0:11:443:0:0:0,-3.31133,-40.2257 dDocent_Contig_15778 197 . C G 1679.66 . AB=0.769231;ABP=43.9342;AC=4;AF=0.666667;AN=6;AO=57;CIGAR=1X;DP=72;DPB=72;DPRA=0;EPP=126.784;EPPR=35.5824;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=2113;QR=582;RO=15;RPL=57;RPP=126.784;RPPR=35.5824;RPR=0;RUN=1;SAF=0;SAP=126.784;SAR=57;SRF=0;SRP=35.5824;SRR=15;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:39:8,31:8:311:31:1199:-96.4661,0,-16.6141 1/1:7:0,7:0:0:7:184:-16.8183,-2.10721,0 0/1:26:7,19:7:271:19:730:-58.2044,0,-16.9297 dDocent_Contig_15779 45 . C A 73.3143 . AB=0.210526;ABP=16.8392;AC=1;AF=0.166667;AN=6;AO=4;CIGAR=1X;DP=58;DPB=58;DPRA=0.974359;EPP=11.6962;EPPR=120.27;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=161;QR=2170;RO=54;RPL=0;RPP=11.6962;RPPR=120.27;RPR=4;RUN=1;SAF=4;SAP=11.6962;SAR=0;SRF=54;SRP=120.27;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:32:32,0:32:1290:0:0:0,-9.63296,-116.361 0/0:7:7,0:7:267:0:0:0,-2.10721,-24.385 0/1:19:15,4:15:613:4:161:-9.15533,0,-49.787 dDocent_Contig_15780 40 . G A 2818.03 . AB=0.794521;ABP=58.011;AC=4;AF=0.666667;AN=6;AO=86;CIGAR=1X;DP=101;DPB=101;DPRA=0;EPP=189.757;EPPR=35.5824;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=3405;QR=602;RO=15;RPL=0;RPP=189.757;RPPR=35.5824;RPR=86;RUN=1;SAF=86;SAP=189.757;SAR=0;SRF=15;SRP=35.5824;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:37:10,27:10:402:27:1061:-84.6412,0,-25.4018 1/1:28:0,28:0:0:28:1125:-101.535,-8.42884,0 0/1:36:5,31:5:200:31:1219:-99.1498,0,-7.54225 dDocent_Contig_15781 48 . T C 1222.66 . AB=0.634921;ABP=12.9715;AC=3;AF=0.5;AN=6;AO=40;CIGAR=1X;DP=63;DPB=63;DPRA=0;EPP=89.8692;EPPR=52.9542;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=1619;QR=935;RO=23;RPL=0;RPP=89.8692;RPPR=52.9542;RPR=40;RUN=1;SAF=40;SAP=89.8692;SAR=0;SRF=23;SRP=52.9542;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:32:13,19:13:530:19:773:-60.2563,0,-38.4131 0/1:3:1,2:1:40:2:80:-6.6887,0,-3.09259 0/1:28:9,19:9:365:19:766:-60.8324,0,-24.7856 dDocent_Contig_15782 17 . G A 68.8962 . AB=0.210526;ABP=16.8392;AC=1;AF=0.166667;AN=6;AO=6;CIGAR=1X;DP=90;DPB=90;DPRA=0.90625;EPP=16.0391;EPPR=185.414;GTI=0;LEN=1;MEANALT=1;MQM=46;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=0;PAIREDR=0.738095;PAO=0;PQA=0;PQR=0;PRO=0;QA=236;QR=3317;RO=84;RPL=0;RPP=16.0391;RPPR=185.414;RPR=6;RUN=1;SAF=6;SAP=16.0391;SAR=0;SRF=84;SRP=185.414;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:39:37,2:37:1444:2:76:0,-4.65193,-123.108 0/1:19:15,4:15:600:4:160:-8.71353,0,-48.6203 0/0:32:32,0:32:1273:0:0:0,-9.63296,-114.832 dDocent_Contig_15783 46 . C T 36.7258 . AB=0.25;ABP=7.35324;AC=1;AF=0.25;AN=4;AO=2;CIGAR=1X;DP=15;DPB=15;DPRA=1.14286;EPP=7.35324;EPPR=31.2394;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=2;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=82;QR=525;RO=13;RPL=0;RPP=7.35324;RPPR=31.2394;RPR=2;RUN=1;SAF=2;SAP=7.35324;SAR=0;SRF=13;SRP=31.2394;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:8:6,2:6:246:2:82:-5.37144,0,-20.1119 ./.:.:.:.:.:.:.:. 0/0:7:7,0:7:279:0:0:0,-2.10721,-25.4811 dDocent_Contig_15784 119 . T A 261.634 . AB=0.326087;ABP=15.095;AC=1;AF=0.166667;AN=6;AO=16;CIGAR=1X;DP=64;DPB=64;DPRA=15.5;EPP=37.7539;EPPR=107.241;GTI=0;LEN=1;MEANALT=1;MQM=37.5625;MQMR=49.5208;NS=3;NUMALT=1;ODDS=0;PAIRED=0;PAIREDR=0.541667;PAO=0;PQA=0;PQR=0;PRO=0;QA=523;QR=1631;RO=48;RPL=0;RPP=37.7539;RPPR=107.241;RPR=16;RUN=1;SAF=0;SAP=37.7539;SAR=16;SRF=0;SRP=107.241;SRR=48;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:16:15,1:15:489:1:36:0,-2.44295,-41.5743 0/1:46:31,15:31:1078:15:487:-27.987,0,-78.2518 0/0:2:2,0:2:64:0:0:0,-0.60206,-6.07855 dDocent_Contig_15785 10 . A T 60.7508 . AB=0.3;ABP=6.48466;AC=1;AF=0.166667;AN=6;AO=3;CIGAR=1X2M1X;DP=36;DPB=36;DPRA=0.769231;EPP=9.52472;EPPR=72.4974;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=117;QR=1216;RO=32;RPL=0;RPP=9.52472;RPPR=72.4974;RPR=3;RUN=1;SAF=3;SAP=9.52472;SAR=0;SRF=32;SRP=72.4974;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|0:15:14,0:14:515:0:0:0,-4.21442,-46.2795 0|1:10:7,3:7:277:3:117:-7.89899,0,-22.2902 0|0:11:11,0:11:424:0:0:0,-3.31133,-38.5131 dDocent_Contig_15786 34 . A G 552.121 . AB=0.263736;ABP=47.1318;AC=3;AF=0.5;AN=6;AO=24;CIGAR=1X;DP=91;DPB=91;DPRA=0;EPP=55.1256;EPPR=148.499;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=0;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=967;QR=2616;RO=67;RPL=0;RPP=55.1256;RPPR=148.499;RPR=24;RUN=1;SAF=24;SAP=55.1256;SAR=0;SRF=67;SRP=148.499;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:34:29,5:29:1127:5:205:-8.59999,0,-91.4829 0/1:31:16,15:16:636:15:605:-45.4539,0,-48.2448 0/1:26:22,4:22:853:4:157:-6.68111,0,-69.252 dDocent_Contig_15787 39 . C A 44.5651 . AB=0.137931;ABP=36.0317;AC=2;AF=0.333333;AN=6;AO=7;CIGAR=1X;DP=70;DPB=70;DPRA=0;EPP=18.2106;EPPR=139.813;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=280;QR=2553;RO=63;RPL=0;RPP=18.2106;RPPR=139.813;RPR=7;RUN=1;SAF=7;SAP=18.2106;SAR=0;SRF=63;SRP=139.813;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:41:38,3:38:1545:3:121:0,-1.06203,-128 0/1:13:12,1:12:477:1:40:-0.0822893,0,-39.3664 0/1:16:13,3:13:531:3:119:-6.27853,0,-43.3199 dDocent_Contig_15788 12 . G A 1906.6 . AB=0.545455;ABP=5.18177;AC=3;AF=0.5;AN=6;AO=66;CIGAR=1X3M;DP=121;DPB=121;DPRA=0;EPP=146.327;EPPR=118.098;GTI=0;LEN=1;MEANALT=1.33333;MQM=58.7879;MQMR=60;NS=3;NUMALT=2;ODDS=0;PAIRED=0.969697;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=2578;QR=2071;RO=53;RPL=0;RPP=146.327;RPPR=118.098;RPR=66;RUN=1;SAF=66;SAP=146.327;SAR=0;SRF=53;SRP=118.098;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|1:40:20,0,20:20:764:0,20:0,770:-57.302,-63.3226,-125.993,0,-63.0527,-57.0321 0|1:35:6,2,27:6:242:2,27:80,1060:-85.0842,-80.2999,-99.6484,0,-13.3618,-11.8232 0|1:46:27,0,19:27:1065:0,19:0,748:-53.797,-61.9248,-149.549,0,-88.0181,-82.2985 dDocent_Contig_15791 14 . G T 707.482 . AB=0.577778;ABP=5.37479;AC=3;AF=0.5;AN=6;AO=26;CIGAR=1X;DP=45;DPB=45;DPRA=0;EPP=59.4686;EPPR=42.0968;GTI=0;LEN=1;MEANALT=1.33333;MQM=49.5769;MQMR=55;NS=3;NUMALT=1;ODDS=0;PAIRED=0;PAIREDR=0.888889;PAO=0;PQA=0;PQR=0;PRO=0;QA=1015;QR=728;RO=18;RPL=0;RPP=59.4686;RPPR=42.0968;RPR=26;RUN=1;SAF=26;SAP=59.4686;SAR=0;SRF=18;SRP=42.0968;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:21:8,13:8:324:13:517:-39.9082,0,-18.6505 0/1:11:5,6:5:203:6:230:-17.5273,0,-15.3417 0/1:13:5,7:5:201:7:268:-18.8355,0,-14.683 dDocent_Contig_15792 18 . C G 340.874 . AB=0.368421;ABP=8.7247;AC=2;AF=0.333333;AN=6;AO=14;CIGAR=1X;DP=39;DPB=39;DPRA=19;EPP=33.4109;EPPR=57.2971;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=537;QR=1005;RO=25;RPL=0;RPP=33.4109;RPPR=57.2971;RPR=14;RUN=1;SAF=14;SAP=33.4109;SAR=0;SRF=25;SRP=57.2971;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:19:10,9:10:406:9:337:-24.9496,0,-31.1805 0/0:1:1,0:1:39:0:0:0,-0.30103,-3.89656 0/1:19:14,5:14:560:5:200:-12.66,0,-45.0231 dDocent_Contig_15793 98 . N T 120.586 . AB=0;ABP=0;AC=4;AF=1;AN=4;AO=5;CIGAR=1X;DP=5;DPB=5;DPRA=0;EPP=13.8677;EPPR=0;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=0;NS=2;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=125;QR=0;RO=0;RPL=5;RPP=13.8677;RPPR=0;RPR=0;RUN=1;SAF=5;SAP=13.8677;SAR=0;SRF=0;SRP=0;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 1/1:2:0,2:0:0:2:55:-5.22427,-0.60206,0 ./.:.:.:.:.:.:.:. 1/1:3:0,3:0:0:3:70:-6.53252,-0.90309,0 dDocent_Contig_15794 21 . T C 499.264 . AB=0.431818;ABP=4.78696;AC=3;AF=0.5;AN=6;AO=19;CIGAR=1X;DP=44;DPB=44;DPRA=0;EPP=44.2683;EPPR=57.2971;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=0.894737;PAIREDR=0.96;PAO=0;PQA=0;PQR=0;PRO=0;QA=751;QR=1001;RO=25;RPL=0;RPP=44.2683;RPPR=57.2971;RPR=19;RUN=1;SAF=19;SAP=44.2683;SAR=0;SRF=25;SRP=57.2971;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:10:4,6:4:160:6:244:-19.3285,0,-11.7735 0/1:10:7,3:7:282:3:113:-7.52811,0,-22.7429 0/1:24:14,10:14:559:10:394:-28.5927,0,-43.4279 dDocent_Contig_15795 88 . T A 173.241 . AB=0.666667;ABP=3.73412;AC=3;AF=0.5;AN=6;AO=3;CIGAR=1M1D1M1X9M1X;DP=6;DPB=5.78571;DPRA=1;EPP=9.52472;EPPR=0;GTI=0;LEN=1;MEANALT=1.5;MQM=60;MQMR=0;NS=3;NUMALT=2;ODDS=0;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=17;PRO=0.5;QA=105;QR=0;RO=0;RPL=3;RPP=9.52472;RPPR=0;RPR=0;RUN=1;SAF=3;SAP=9.52472;SAR=0;SRF=0;SRP=0;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 1|1:1:0,0,1:0:0:0,1:0,35:-3.49863,-3.49863,-3.49863,-0.30103,-0.30103,0 0|0:2:0,2,0:0:0:2,0:68,0:-6.45793,-0.60206,0,-6.45793,-0.60206,-6.45793 0|1:3:0,1,2:0:0:1,2:35,70:-8.85296,-6.01525,-5.71422,-3.1976,0,-2.59554 dDocent_Contig_15796 54 . A T 78.5865 . AB=0.6;ABP=3.44459;AC=1;AF=0.166667;AN=6;AO=3;CIGAR=1X;DP=68;DPB=68;DPRA=0.15873;EPP=9.52472;EPPR=144.156;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=0;PAIREDR=0.953846;PAO=0;PQA=0;PQR=0;PRO=0;QA=120;QR=2463;RO=65;RPL=3;RPP=9.52472;RPPR=144.156;RPR=0;RUN=1;SAF=3;SAP=9.52472;SAR=0;SRF=65;SRP=144.156;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:32:32,0:32:1253:0:0:0,-9.63296,-113.047 0/1:5:2,3:2:79:3:120:-9.68254,0,-5.99248 0/0:31:31,0:31:1131:0:0:0,-9.33193,-102.068 dDocent_Contig_15798 23 . C T 181.43 . AB=0;ABP=0;AC=4;AF=1;AN=4;AO=5;CIGAR=2X;DP=5;DPB=5;DPRA=0;EPP=13.8677;EPPR=0;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=0;NS=2;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=190;QR=0;RO=0;RPL=0;RPP=13.8677;RPPR=0;RPR=5;RUN=1;SAF=5;SAP=13.8677;SAR=0;SRF=0;SRP=0;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 1|1:2:0,2:0:0:2:74:-7.02486,-0.60206,0 .:.:.:.:.:.:.:. 1|1:3:0,3:0:0:3:116:-10.8163,-0.90309,0 dDocent_Contig_15799 12 . A G 77.6824 . AB=0;ABP=0;AC=2;AF=0.333333;AN=6;AO=2;CIGAR=1X3M1X3M1X;DP=30;DPB=30;DPRA=0.142857;EPP=3.0103;EPPR=59.4686;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=0;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=80;QR=1029;RO=26;RPL=0;RPP=7.35324;RPPR=59.4686;RPR=2;RUN=1;SAF=1;SAP=3.0103;SAR=1;SRF=26;SRP=59.4686;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|0:13:12,0:12:475:0:0:0,-3.61236,-42.8673 0|0:15:14,0:14:554:0:0:0,-4.21442,-49.7963 1|1:2:0,2:0:0:2:80:-7.59179,-0.60206,0 dDocent_Contig_15801 37 . G A 72.5658 . AB=0.428571;ABP=3.32051;AC=1;AF=0.166667;AN=6;AO=3;CIGAR=1X;DP=28;DPB=28;DPRA=0.666667;EPP=9.52472;EPPR=57.2971;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=120;QR=1008;RO=25;RPL=0;RPP=9.52472;RPPR=57.2971;RPR=3;RUN=1;SAF=3;SAP=9.52472;SAR=0;SRF=25;SRP=57.2971;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:13:13,0:13:525:0:0:0,-3.91339,-47.5967 0/1:7:4,3:4:161:3:120:-9.08048,0,-12.7677 0/0:8:8,0:8:322:0:0:0,-2.40824,-29.3481 dDocent_Contig_15802 22 . C T 372.572 . AB=0.454545;ABP=3.20771;AC=1;AF=0.166667;AN=6;AO=5;CIGAR=1X1M1X;DP=45;DPB=45;DPRA=0;EPP=13.8677;EPPR=61.6401;GTI=0;LEN=1;MEANALT=2;MQM=60;MQMR=60;NS=3;NUMALT=2;ODDS=6.93889e-18;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=195;QR=1061;RO=27;RPL=0;RPP=13.8677;RPPR=61.6401;RPR=5;RUN=1;SAF=5;SAP=13.8677;SAR=0;SRF=27;SRP=61.6401;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|0:20:14,0,6:14:555:0,6:0,242:-16.1367,-20.3511,-66.0295,0,-46.0792,-44.273 1|0:11:3,5,3:3:116:5,3:195,122:-15.6694,-0.555472,-8.56801,-6.50299,0,-15.1263 0|0:14:10,0,4:10:390:0,4:0,164:-10.9355,-13.9458,-45.9862,0,-32.4442,-31.2401 dDocent_Contig_15805 42 . T C 37.3684 . AB=0.157895;ABP=22.325;AC=1;AF=0.166667;AN=6;AO=3;CIGAR=1X;DP=61;DPB=61;DPRA=0.904762;EPP=9.52472;EPPR=128.956;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=121;QR=2323;RO=58;RPL=0;RPP=9.52472;RPPR=128.956;RPR=3;RUN=1;SAF=3;SAP=9.52472;SAR=0;SRF=58;SRP=128.956;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:37:37,0:37:1488:0:0:0,-11.1381,-134.162 0/0:5:5,0:5:197:0:0:0,-1.50515,-18.1053 0/1:19:16,3:16:638:3:121:-5.56063,0,-52.0332 dDocent_Contig_15807 50 . A G 562.785 . AB=0.0882353;ABP=103.153;AC=3;AF=0.5;AN=6;AO=9;CIGAR=1X1M3D1M;DP=71;DPB=58;DPRA=0;EPP=22.5536;EPPR=100.727;GTI=0;LEN=1;MEANALT=1.33333;MQM=60;MQMR=60;NS=3;NUMALT=2;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=354;QR=1733;RO=45;RPL=9;RPP=22.5536;RPPR=100.727;RPR=0;RUN=1;SAF=9;SAP=22.5536;SAR=0;SRF=45;SRP=100.727;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|0:52:32,3,17:32:1223:3,17:118,638:-42.613,-42.5366,-141.98,0,-90.6246,-95.2147 1|1:3:0,3,0:0:0:3,0:119,0:-11.0952,-0.90309,0,-11.0952,-0.90309,-11.0952 0|1:16:13,3,0:13:510:3,0:117,0:-6.09281,0,-41.4321,-10.0062,-42.3352,-51.9513 dDocent_Contig_15808 11 . C T 1146.86 . AB=0.541667;ABP=4.09604;AC=3;AF=0.5;AN=6;AO=39;CIGAR=1X;DP=72;DPB=72;DPRA=0;EPP=87.6977;EPPR=74.6689;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=1565;QR=1338;RO=33;RPL=0;RPP=87.6977;RPPR=74.6689;RPR=39;RUN=1;SAF=39;SAP=87.6977;SAR=0;SRF=33;SRP=74.6689;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:32:19,13:19:768:13:524:-37.8736,0,-59.8061 0/1:11:3,8:3:122:8:311:-25.0417,0,-8.06116 0/1:29:11,18:11:448:18:730:-57.2939,0,-31.9459 dDocent_Contig_15809 132 . T G 153.023 . AB=0.35;ABP=6.91895;AC=1;AF=0.166667;AN=6;AO=7;CIGAR=1X;DP=31;DPB=31;DPRA=3.63636;EPP=18.2106;EPPR=55.1256;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=250;QR=839;RO=24;RPL=0;RPP=18.2106;RPPR=55.1256;RPR=7;RUN=1;SAF=0;SAP=18.2106;SAR=7;SRF=0;SRP=55.1256;SRR=24;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:20:13,7:13:451:7:250:-16.825,0,-34.8991 0/0:8:8,0:8:280:0:0:0,-2.40824,-25.5395 0/0:3:3,0:3:108:0:0:0,-0.90309,-10.0752 dDocent_Contig_15810 50 . T A 348.125 . AB=0.228916;ABP=55.989;AC=2;AF=0.333333;AN=6;AO=19;CIGAR=1M1I1X;DP=87;DPB=96.5;DPRA=10.375;EPP=44.2683;EPPR=150.67;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=696;QR=2620;RO=68;RPL=19;RPP=44.2683;RPPR=150.67;RPR=0;RUN=1;SAF=19;SAP=44.2683;SAR=0;SRF=68;SRP=150.67;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|1:53:44,9:44:1694:9:334:-14.4508,0,-136.753 0|0:4:4,0:4:158:0:0:0,-1.20412,-14.6007 0|1:30:20,10:20:768:10:362:-23.8845,0,-60.4056 dDocent_Contig_15811 11 . C T 1270.86 . AB=0.0681818;ABP=74.2741;AC=0;AF=0;AN=6;AO=3;CIGAR=2X;DP=80;DPB=80;DPRA=0;EPP=9.52472;EPPR=76.8404;GTI=0;LEN=1;MEANALT=2;MQM=60;MQMR=60;NS=3;NUMALT=2;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=119;QR=1328;RO=34;RPL=0;RPP=9.52472;RPPR=76.8404;RPR=3;RUN=1;SAF=3;SAP=9.52472;SAR=0;SRF=34;SRP=76.8404;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|0:44:18,3,23:18:700:3,23:119,908:-69.2844,-64.9066,-121.523,0,-47.7183,-50.5917 0|0:18:5,0,13:5:194:0,13:0,529:-42.5377,-44.0429,-59.977,0,-16.327,-12.4136 0|0:18:11,0,7:11:434:0,7:0,287:-20.7867,-24.098,-59.7945,0,-36.1,-33.9928 dDocent_Contig_15812 37 . A G 207.489 . AB=0.232558;ABP=29.7245;AC=2;AF=0.333333;AN=6;AO=12;CIGAR=1X;DP=114;DPB=114;DPRA=0;EPP=29.068;EPPR=224.5;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=484;QR=4019;RO=102;RPL=0;RPP=29.068;RPPR=224.5;RPR=12;RUN=1;SAF=12;SAP=29.068;SAR=0;SRF=102;SRP=224.5;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:71:69,2:69:2706:2:79:0,-13.8759,-236.153 0/1:10:4,6:4:160:6:242:-19.1472,0,-11.7735 0/1:33:29,4:29:1153:4:163:-5.12444,0,-94.1171 dDocent_Contig_15813 95 . G A 295.414 . AB=0.555556;ABP=3.49285;AC=3;AF=0.5;AN=6;AO=12;CIGAR=1X;DP=30;DPB=30;DPRA=1;EPP=29.068;EPPR=42.0968;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=398;QR=619;RO=18;RPL=12;RPP=29.068;RPPR=42.0968;RPR=0;RUN=1;SAF=12;SAP=29.068;SAR=0;SRF=18;SRP=42.0968;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:18:8,10:8:275:10:329:-24.5113,0,-19.6663 1/1:2:0,2:0:0:2:69:-6.55266,-0.60206,0 0/0:10:10,0:10:344:0:0:0,-3.0103,-31.2928 dDocent_Contig_15816 39 . A G 87.1825 . AB=0.127907;ABP=106.433;AC=3;AF=0.5;AN=6;AO=11;CIGAR=1X;DP=86;DPB=86;DPRA=0;EPP=26.8965;EPPR=165.871;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=430;QR=2956;RO=75;RPL=0;RPP=26.8965;RPPR=165.871;RPR=11;RUN=1;SAF=11;SAP=26.8965;SAR=0;SRF=75;SRP=165.871;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:60:53,7:53:2083:7:272:-6.78456,0,-169.607 0/1:7:6,1:6:240:1:39:-1.78935,0,-19.8684 0/1:19:16,3:16:633:3:119:-5.37544,0,-51.5875 dDocent_Contig_15817 9 . A G 65.7279 . AB=0.2;ABP=18.6449;AC=1;AF=0.166667;AN=6;AO=4;CIGAR=1X;DP=64;DPB=64;DPRA=0.909091;EPP=11.6962;EPPR=133.299;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=156;QR=2292;RO=60;RPL=0;RPP=11.6962;RPPR=133.299;RPR=4;RUN=1;SAF=4;SAP=11.6962;SAR=0;SRF=60;SRP=133.299;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:37:37,0:37:1406:0:0:0,-11.1381,-126.823 0/1:20:16,4:16:617:4:156:-8.39669,0,-49.8489 0/0:7:7,0:7:269:0:0:0,-2.10721,-24.5747 dDocent_Contig_15818 134 . A G 231.66 . AB=0.45;ABP=3.87889;AC=2;AF=0.333333;AN=6;AO=20;CIGAR=1X1M1X1M;DP=44;DPB=44;DPRA=0;EPP=46.4397;EPPR=50.7827;GTI=0;LEN=1;MEANALT=1.33333;MQM=23.95;MQMR=60;NS=3;NUMALT=2;ODDS=0;PAIRED=0;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=479;QR=751;RO=22;RPL=0;RPP=46.4397;RPPR=50.7827;RPR=20;RUN=1;SAF=0;SAP=46.4397;SAR=20;SRF=0;SRP=50.7827;SRR=22;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|1:31:16,15,0:16:552:15,0:377,0:-20.8491,0,-40.675,-25.6656,-45.1905,-70.5746 0|0:4:0,2,2:0:0:2,2:12,59:-0.903419,-0.869453,-0.267393,-0.60206,-0.525332,0 0|1:9:6,3,0:6:199:3,0:90,0:-4.84845,0,-15.5266,-6.65463,-16.4297,-22.7939 dDocent_Contig_15819 28 . A T 167.114 . AB=0.25;ABP=13.8677;AC=1;AF=0.166667;AN=6;AO=5;CIGAR=7M1X1M1X6M;DP=22;DPB=19.375;DPRA=5;EPP=13.8677;EPPR=24.725;GTI=0;LEN=1;MEANALT=2;MQM=60;MQMR=60;NS=3;NUMALT=2;ODDS=3.46945e-18;PAIRED=0;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=203;QR=391;RO=10;RPL=0;RPP=13.8677;RPPR=24.725;RPR=5;RUN=1;SAF=5;SAP=13.8677;SAR=0;SRF=10;SRP=24.725;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|0:12:5,3,4:5:195:3,4:122,157:-11.3991,-2.83498,-17.9596,0,-5.94931,-14.8146 0|1:8:5,2,1:5:196:2,1:81,31:-5.23725,0,-15.584,-4.28814,-13.7138,-20.0956 0|0:2:0,0,1:0:0:0,1:0,40:-3.59611,-3.59611,-3.59611,-0.30103,-0.30103,0 dDocent_Contig_15820 9 . A G 741.666 . AB=0.205556;ABP=138.558;AC=1;AF=0.166667;AN=6;AO=42;CIGAR=1X;DP=320;DPB=320;DPRA=0;EPP=94.2121;EPPR=595.854;GTI=0;LEN=1;MEANALT=1.33333;MQM=60;MQMR=59.8014;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=0.98917;PAO=0;PQA=0;PQR=0;PRO=0;QA=1635;QR=10626;RO=277;RPL=0;RPP=94.2121;RPPR=604.508;RPR=42;RUN=1;SAF=42;SAP=94.2121;SAR=0;SRF=276;SRP=595.854;SRR=1;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:180:143,37:143:5478:37:1440:-75.6895,0,-438.812 0/0:61:60,1:60:2303:1:39:0,-14.4663,-202.649 0/0:79:74,4:74:2845:4:156:0,-9.45271,-241.74 dDocent_Contig_15821 160 . T C 139.942 . AB=0.315789;ABP=8.61041;AC=2;AF=0.333333;AN=6;AO=6;CIGAR=1X;DP=41;DPB=41;DPRA=0.431818;EPP=16.0391;EPPR=79.0118;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=234;QR=1389;RO=35;RPL=6;RPP=16.0391;RPPR=79.0118;RPR=0;RUN=1;SAF=0;SAP=16.0391;SAR=6;SRF=0;SRP=79.0118;SRR=35;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:22:22,0:22:875:0:0:0,-6.62266,-79.0599 0/1:12:11,1:11:438:1:39:-0.284205,0,-36.1612 0/1:7:2,5:2:76:5:195:-15.8152,0,-5.10633 dDocent_Contig_15822 35 . C G 144.552 . AB=0.139535;ABP=100.07;AC=2;AF=0.333333;AN=6;AO=12;CIGAR=1X;DP=110;DPB=110;DPRA=1.79167;EPP=29.068;EPPR=215.815;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=6.93889e-18;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=479;QR=3882;RO=98;RPL=0;RPP=29.068;RPPR=215.815;RPR=12;RUN=1;SAF=12;SAP=29.068;SAR=0;SRF=98;SRP=215.815;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:60:51,9:51:2006:9:358:-14.5196,0,-162.675 0/0:24:24,0:24:961:0:0:0,-7.22472,-86.7911 0/1:26:23,3:23:915:3:121:-3.45342,0,-74.8285 dDocent_Contig_15825 25 . G T 121.118 . AB=0.148148;ABP=61.0771;AC=1;AF=0.166667;AN=6;AO=11;CIGAR=1X;DP=114;DPB=114;DPRA=0;EPP=26.8965;EPPR=226.672;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=59.4175;NS=3;NUMALT=1;ODDS=6.93889e-18;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=448;QR=4099;RO=103;RPL=0;RPP=26.8965;RPPR=226.672;RPR=11;RUN=1;SAF=11;SAP=26.8965;SAR=0;SRF=103;SRP=226.672;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:54:46,8:46:1836:8:328:-13.6347,0,-149.1 0/0:26:25,1:25:990:1:38:0,-4.02951,-85.6033 0/0:34:32,2:32:1273:2:82:0,-2.45534,-106.864 dDocent_Contig_15826 13 . G A 550.227 . AB=0.21374;ABP=96.251;AC=2;AF=0.333333;AN=6;AO=28;CIGAR=1X1M;DP=133;DPB=133;DPRA=32.75;EPP=63.8115;EPPR=226.672;GTI=0;LEN=1;MEANALT=1.5;MQM=60;MQMR=60;NS=3;NUMALT=2;ODDS=0;PAIRED=0.75;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=1079;QR=4049;RO=103;RPL=0;RPP=63.8115;RPPR=226.672;RPR=28;RUN=1;SAF=28;SAP=63.8115;SAR=0;SRF=103;SRP=226.672;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|1:96:79,0,17:79:3105:0,17:0,640:-29.0204,-52.8018,-308.201,0,-255.778,-250.661 0|0:2:2,0,0:2:78:0,0:0,0:0,-0.60206,-7.40347,-0.60206,-7.40347,-7.40347 0|1:35:22,2,11:22:866:2,11:81,439:-29.5245,-29.4671,-100.101,0,-64.5489,-67.9177 dDocent_Contig_15827 18 . C G 451.846 . AB=0.327586;ABP=17.986;AC=3;AF=0.5;AN=6;AO=19;CIGAR=1X;DP=58;DPB=58;DPRA=0;EPP=44.2683;EPPR=87.6977;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=0.820513;PAO=0;PQA=0;PQR=0;PRO=0;QA=744;QR=1535;RO=39;RPL=0;RPP=44.2683;RPPR=87.6977;RPR=19;RUN=1;SAF=19;SAP=44.2683;SAR=0;SRF=39;SRP=87.6977;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:19:16,3:16:639:3:120:-5.46812,0,-52.1248 0/1:33:18,15:18:705:15:584:-42.9651,0,-53.8429 0/1:6:5,1:5:191:1:40:-2.1895,0,-15.7483 dDocent_Contig_15828 7 . A T 1488.18 . AB=0.160202;ABP=597.726;AC=2;AF=0.333333;AN=6;AO=98;CIGAR=1X;DP=641;DPB=641;DPRA=0;EPP=215.815;EPPR=1171.26;GTI=0;LEN=1;MEANALT=2;MQM=59.8571;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=0.887755;PAIREDR=0.79368;PAO=0;PQA=0;PQR=0;PRO=0;QA=3780;QR=20589;RO=538;RPL=0;RPP=215.815;RPPR=1171.26;RPR=98;RUN=1;SAF=98;SAP=215.815;SAR=0;SRF=538;SRP=1171.26;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:426:359,64:359:13746:64:2460:-93.855,0,-1108.8 0/0:48:44,3:44:1666:3:117:0,-3.62769,-139.297 0/1:167:135,31:135:5177:31:1203:-58.4856,0,-415.862 dDocent_Contig_15829 8 . A T 601.112 . AB=0.176471;ABP=18.4661;AC=3;AF=0.5;AN=6;AO=14;CIGAR=1X1M;DP=37;DPB=37;DPRA=1.55556;EPP=33.4109;EPPR=35.5824;GTI=0;LEN=1;MEANALT=1.5;MQM=60;MQMR=60;NS=3;NUMALT=2;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=535;QR=577;RO=15;RPL=0;RPP=33.4109;RPPR=35.5824;RPR=14;RUN=1;SAF=14;SAP=33.4109;SAR=0;SRF=15;SRP=35.5824;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|0:9:9,0,0:9:343:0,0:0,0:0,-2.70927,-31.2273,-2.70927,-31.2273,-31.2273 1|1:11:0,0,11:0:0:0,11:0,419:-38.0616,-38.0616,-38.0616,-3.31133,-3.31133,0 0|1:17:6,8,3:6:234:8,3:309,116:-23.5724,0,-16.8292,-15.8502,-9.71031,-34.184 dDocent_Contig_15830 98 . N T 61.8465 . AB=0;ABP=0;AC=2;AF=1;AN=2;AO=2;CIGAR=2X1M1X3I1X;DP=2;DPB=3.2;DPRA=0;EPP=7.35324;EPPR=0;GTI=0;LEN=1;MEANALT=1;MQM=34;MQMR=0;NS=1;NUMALT=1;ODDS=5.99146;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=76;QR=0;RO=0;RPL=2;RPP=7.35324;RPPR=0;RPR=0;RUN=1;SAF=0;SAP=7.35324;SAR=2;SRF=0;SRP=0;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL .:.:.:.:.:.:.:. .:.:.:.:.:.:.:. 1|1:2:0,2:0:0:2:76:-6.18357,-0.60206,0 dDocent_Contig_15832 77 . C G 131.121 . AB=0.164179;ABP=68.6406;AC=2;AF=0.5;AN=4;AO=11;CIGAR=1X;DP=67;DPB=67;DPRA=0;EPP=26.8965;EPPR=124.613;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=2;NUMALT=1;ODDS=0;PAIRED=0.454545;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=403;QR=2124;RO=56;RPL=11;RPP=26.8965;RPPR=124.613;RPR=0;RUN=1;SAF=11;SAP=26.8965;SAR=0;SRF=56;SRP=124.613;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:52:44,8:44:1685:8:292:-10.9725,0,-136.26 ./.:.:.:.:.:.:.:. 0/1:15:12,3:12:439:3:111:-5.83847,0,-35.3386 dDocent_Contig_15834 19 . T G 245.993 . AB=0.197183;ABP=59.5603;AC=3;AF=0.5;AN=6;AO=14;CIGAR=1X;DP=71;DPB=71;DPRA=0;EPP=33.4109;EPPR=126.784;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=0.928571;PAIREDR=0.333333;PAO=0;PQA=0;PQR=0;PRO=0;QA=551;QR=2303;RO=57;RPL=0;RPP=33.4109;RPPR=126.784;RPR=14;RUN=1;SAF=14;SAP=33.4109;SAR=0;SRF=57;SRP=126.784;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:30:27,3:27:1088:3:110:-1.22634,0,-89.1763 0/1:20:17,3:17:685:3:118:-4.98098,0,-55.96 0/1:21:13,8:13:530:8:323:-23.1173,0,-41.725 dDocent_Contig_15836 107 . N C 256.603 . AB=0;ABP=0;AC=6;AF=1;AN=6;AO=9;CIGAR=1X;DP=9;DPB=9;DPRA=0;EPP=22.5536;EPPR=0;GTI=0;LEN=1;MEANALT=1;MQM=46.8889;MQMR=0;NS=3;NUMALT=1;ODDS=1.69407e-21;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=309;QR=0;RO=0;RPL=0;RPP=22.5536;RPPR=0;RPR=9;RUN=1;SAF=0;SAP=22.5536;SAR=9;SRF=0;SRP=0;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 1/1:5:0,5:0:0:5:171:-15.0109,-1.50515,0 1/1:2:0,2:0:0:2:70:-6.6474,-0.60206,0 1/1:2:0,2:0:0:2:68:-3.39933,-0.60206,0 dDocent_Contig_15837 19 . G A 1071.81 . AB=0.336;ABP=32.2123;AC=3;AF=0.5;AN=6;AO=42;CIGAR=1X;DP=125;DPB=125;DPRA=0;EPP=94.2121;EPPR=183.243;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=6.93889e-18;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=1659;QR=3296;RO=83;RPL=0;RPP=94.2121;RPPR=183.243;RPR=42;RUN=1;SAF=42;SAP=94.2121;SAR=0;SRF=83;SRP=183.243;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:76:59,17:59:2324:17:670:-37.7509,0,-186.435 0/1:20:8,12:8:325:12:473:-36.8975,0,-23.599 0/1:29:16,13:16:647:13:516:-38.056,0,-49.8334 dDocent_Contig_15839 59 . T A 661.416 . AB=0.380282;ABP=11.8491;AC=3;AF=0.5;AN=6;AO=27;CIGAR=1X;DP=71;DPB=71;DPRA=0;EPP=61.6401;EPPR=98.5551;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=1022;QR=1556;RO=44;RPL=27;RPP=61.6401;RPPR=98.5551;RPR=0;RUN=1;SAF=27;SAP=61.6401;SAR=0;SRF=44;SRP=98.5551;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:34:24,10:24:864:10:376:-23.9562,0,-67.828 0/1:31:16,15:16:546:15:572:-42.4885,0,-40.1201 0/1:6:4,2:4:146:2:74:-5.2197,0,-11.6916 dDocent_Contig_15840 19 . G A 59.6935 . AB=0.181818;ABP=22.3561;AC=1;AF=0.166667;AN=6;AO=4;CIGAR=1X;DP=32;DPB=32;DPRA=4.4;EPP=11.6962;EPPR=63.8115;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=156;QR=1135;RO=28;RPL=0;RPP=11.6962;RPPR=63.8115;RPR=4;RUN=1;SAF=4;SAP=11.6962;SAR=0;SRF=28;SRP=63.8115;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:5:5,0:5:204:0:0:0,-1.50515,-18.744 0/0:5:5,0:5:200:0:0:0,-1.50515,-18.3793 0/1:22:18,4:18:731:4:156:-7.79317,0,-59.4917 dDocent_Contig_15841 12 . T A 1214.72 . AB=0.407407;ABP=11.0528;AC=3;AF=0.5;AN=6;AO=44;CIGAR=1X;DP=108;DPB=108;DPRA=0;EPP=98.5551;EPPR=141.985;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=0.977273;PAIREDR=0.9375;PAO=0;PQA=0;PQR=0;PRO=0;QA=1761;QR=2585;RO=64;RPL=0;RPP=98.5551;RPPR=141.985;RPR=44;RUN=1;SAF=44;SAP=98.5551;SAR=0;SRF=64;SRP=141.985;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:48:24,24:24:960:24:964:-72.6096,0,-72.2503 0/1:23:15,8:15:609:8:318:-22.0635,0,-48.2243 0/1:37:25,12:25:1016:12:479:-32.3215,0,-80.5938 dDocent_Contig_15842 15 . G A 656.49 . AB=0.0555556;ABP=64.7766;AC=2;AF=0.333333;AN=6;AO=2;CIGAR=7M1X1M1X3M;DP=195;DPB=196.385;DPRA=0;EPP=7.35324;EPPR=241.872;GTI=0;LEN=1;MEANALT=5;MQM=60;MQMR=60;NS=3;NUMALT=5;ODDS=0;PAIRED=1;PAIREDR=0.727273;PAO=0;PQA=0;PQR=0;PRO=0;QA=80;QR=4244;RO=110;RPL=0;RPP=7.35324;RPPR=241.872;RPR=2;RUN=1;SAF=2;SAP=7.35324;SAR=0;SRF=110;SRP=241.872;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|1:100:51,13,0,11,2,9:51:1970:13,0,11,2,9:511,0,422,80,361:-26.6775,0,-157.876,-42.03,-161.79,-203.821,-7.39461,-127.152,-169.183,-165.872,-35.4397,-155.199,-197.231,-162.593,-196.629,-12.2846,-132.044,-174.076,-139.438,-167.485,-171.366 0|1:36:22,5,2,3,3,0:22:835:5,2,3,3,0:198,80,113,122,0:-9.67552,0,-66.9561,-9.70695,-61.8699,-77.5667,-7.04327,-59.2025,-68.91,-74.598,-6.2314,-58.3955,-68.1034,-65.4358,-73.7916,-16.2982,-68.4612,-78.1688,-75.5011,-74.6947,-84.7598 0|0:59:37,0,0,0,0,14:37:1439:0,0,0,0,14:0,0,0,0,558:-34.8189,-45.957,-164.212,-45.957,-164.212,-164.212,-45.957,-164.212,-164.212,-164.212,-45.957,-164.212,-164.212,-164.212,-164.212,0,-118.258,-118.258,-118.258,-118.258,-114.044 dDocent_Contig_15843 25 . G T 31.7892 . AB=0.125;ABP=51.8684;AC=2;AF=0.333333;AN=6;AO=6;CIGAR=1M1D4M1X2M1X2M6D1X1M1X;DP=56;DPB=54;DPRA=0;EPP=16.0391;EPPR=109.412;GTI=0;LEN=1;MEANALT=1.33333;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=229;QR=1887;RO=49;RPL=0;RPP=16.0391;RPPR=109.412;RPR=6;RUN=1;SAF=6;SAP=16.0391;SAR=0;SRF=49;SRP=109.412;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|1:22:20,2:20:773:2:80:-0.969131,0,-63.2731 0|0:16:15,1:15:568:1:39:0,-0.919915,-47.563 0|1:18:14,3:14:546:3:110:-4.9891,0,-44.2674 dDocent_Contig_15844 7 . A G 370.679 . AB=0.233333;ABP=21.5402;AC=1;AF=0.166667;AN=6;AO=7;CIGAR=1X3M1X3M1X;DP=65;DPB=65;DPRA=2.5;EPP=18.2106;EPPR=92.0407;GTI=0;LEN=1;MEANALT=4;MQM=43;MQMR=60;NS=3;NUMALT=3;ODDS=0;PAIRED=0;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=258;QR=1575;RO=41;RPL=0;RPP=18.2106;RPPR=92.0407;RPR=7;RUN=1;SAF=0;SAP=18.2106;SAR=7;SRF=41;SRP=92.0407;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|1:30:16,7,2,4:16:627:7,2,4:258,76,149:-15.5403,0,-49.4613,-14.1673,-45.3817,-65.1383,-8.34836,-39.5645,-53.7344,-58.7176 0|0:12:12,0,0,0:12:466:0,0,0:0,0,0:0,-3.61236,-42.2915,-3.61236,-42.2915,-42.2915,-3.61236,-42.2915,-42.2915,-42.2915 0|0:23:13,0,0,9:13:482:0,0,9:0,0,352:-25.0505,-28.9639,-68.3872,-28.9639,-68.3872,-68.3872,0,-39.4429,-39.4429,-36.7336 dDocent_Contig_15845 10 . A T 639.207 . AB=0.352941;ABP=15.7837;AC=2;AF=0.333333;AN=6;AO=24;CIGAR=1X;DP=69;DPB=69;DPRA=34;EPP=55.1256;EPPR=100.727;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=969;QR=1815;RO=45;RPL=0;RPP=55.1256;RPPR=100.727;RPR=24;RUN=1;SAF=24;SAP=55.1256;SAR=0;SRF=45;SRP=100.727;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:53:36,17:36:1449:17:685:-46.0245,0,-114.7 0/0:1:1,0:1:38:0:0:0,-0.30103,-3.79727 0/1:15:8,7:8:328:7:284:-21.4183,0,-25.3749 dDocent_Contig_15848 10 . A C 387.083 . AB=0.518519;ABP=3.09072;AC=3;AF=0.5;AN=6;AO=14;CIGAR=1X;DP=27;DPB=27;DPRA=0;EPP=33.4109;EPPR=31.2394;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=564;QR=516;RO=13;RPL=0;RPP=33.4109;RPPR=31.2394;RPR=14;RUN=1;SAF=14;SAP=33.4109;SAR=0;SRF=13;SRP=31.2394;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:12:7,5:7:283:5:201:-14.8583,0,-22.2306 0/1:7:5,2:5:193:2:77:-5.20099,0,-15.6325 0/1:8:1,7:1:40:7:286:-23.7066,0,-1.58744 dDocent_Contig_15849 8 . A C 4932.41 . AB=0.544586;ABP=8.43207;AC=3;AF=0.5;AN=6;AO=171;CIGAR=1X;DP=314;DPB=314;DPRA=0;EPP=365.697;EPPR=300.502;GTI=0;LEN=1;MEANALT=2;MQM=58.5906;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=0.994152;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=6599;QR=5277;RO=137;RPL=0;RPP=374.332;RPPR=300.502;RPR=171;RUN=1;SAF=170;SAP=365.697;SAR=1;SRF=137;SRP=300.502;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:87:37,48:37:1419:48:1855:-141.103,0,-102.031 0/1:128:50,75:50:1932:75:2897:-221.066,0,-136.126 0/1:99:50,48:50:1926:48:1847:-136.595,0,-143.736 dDocent_Contig_15850 87 . A G 201.408 . AB=0.366667;ABP=7.64277;AC=3;AF=0.5;AN=6;AO=11;CIGAR=1X;DP=30;DPB=30;DPRA=0;EPP=26.8965;EPPR=44.2683;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=374;QR=633;RO=19;RPL=11;RPP=26.8965;RPPR=44.2683;RPR=0;RUN=1;SAF=11;SAP=26.8965;SAR=0;SRF=19;SRP=44.2683;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:13:6,7:6:214:7:235:-17.5647,0,-15.6944 0/1:12:10,2:10:311:2:69:-2.9403,0,-24.6781 0/1:5:3,2:3:108:2:70:-5.14225,0,-8.57002 dDocent_Contig_15851 117 . G T 35.6637 . AB=0.333333;ABP=5.18177;AC=1;AF=0.166667;AN=6;AO=3;CIGAR=2X;DP=25;DPB=25;DPRA=1.125;EPP=9.52472;EPPR=48.6112;GTI=0;LEN=1;MEANALT=2;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=87;QR=714;RO=21;RPL=0;RPP=9.52472;RPPR=48.6112;RPR=3;RUN=1;SAF=0;SAP=9.52472;SAR=3;SRF=0;SRP=48.6112;SRR=21;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|0:13:13,0:13:452:0:0:0,-3.91339,-41.0123 0|1:9:5,3:5:163:3:87:-5.38998,0,-12.2536 0|0:3:3,0:3:99:0:0:0,-0.90309,-9.23712 dDocent_Contig_15855 11 . A G 2506.48 . AB=0.320513;ABP=46.6625;AC=3;AF=0.5;AN=6;AO=50;CIGAR=1X3M1X2M2X;DP=156;DPB=156;DPRA=0;EPP=111.584;EPPR=52.9542;GTI=0;LEN=1;MEANALT=4;MQM=59.76;MQMR=60;NS=3;NUMALT=4;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=1815;QR=873;RO=23;RPL=0;RPP=111.584;RPPR=52.9542;RPR=50;RUN=1;SAF=50;SAP=111.584;SAR=0;SRF=23;SRP=52.9542;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 1|0:60:11,22,2,24,0:11:413:22,2,24,0:787,50,781,0:-89.9787,-29.1124,-56.3358,-89.3966,-59.0662,-122.631,-30.3239,0,-60.2714,-56.9375,-93.2901,-62.9585,-123.233,-64.1622,-127.127 1|0:56:5,16,4,29,2:5:191:16,4,29,2:575,130,996,28:-109.652,-64.2405,-75.1027,-100.682,-69.4442,-115.154,-31.2502,0,-36.4581,-38.2012,-109.247,-78.0114,-114.448,-45.0293,-124.32 1|0:40:7,12,0,18,2:7:269:12,0,18,2:453,0,549,22:-56.5406,-21.4866,-39.9817,-58.6478,-43.5941,-80.7424,-15.0581,0,-37.155,-31.7364,-57.2834,-42.2317,-79.3762,-35.8016,-78.7741 dDocent_Contig_15856 8 . A G 58.2031 . AB=0.333333;ABP=5.18177;AC=1;AF=0.166667;AN=6;AO=3;CIGAR=1X;DP=43;DPB=43;DPRA=0.529412;EPP=9.52472;EPPR=89.8692;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=111;QR=1537;RO=40;RPL=0;RPP=9.52472;RPPR=89.8692;RPR=3;RUN=1;SAF=3;SAP=9.52472;SAR=0;SRF=40;SRP=89.8692;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:21:21,0:21:810:0:0:0,-6.32163,-73.2247 0/1:9:6,3:6:229:3:111:-7.64422,0,-18.266 0/0:13:13,0:13:498:0:0:0,-3.91339,-45.1663 dDocent_Contig_15858 13 . G A 136.72 . AB=0.142857;ABP=72.8076;AC=1;AF=0.166667;AN=6;AO=10;CIGAR=7M1X5M1X1M1X1M1X;DP=123;DPB=124.667;DPRA=7.1875;EPP=24.725;EPPR=222.329;GTI=0;LEN=1;MEANALT=5;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=6.93889e-18;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=397;QR=3869;RO=101;RPL=0;RPP=24.725;RPPR=222.329;RPR=10;RUN=1;SAF=10;SAP=24.725;SAR=0;SRF=101;SRP=222.329;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|0:52:46,1:46:1759:1:38:0,-10.7116,-154.854 0|0:8:8,0:8:310:0:0:0,-2.40824,-28.2637 0|1:63:47,9:47:1800:9:359:-15.4959,0,-145.119 dDocent_Contig_15859 9 . A T 57.8694 . AB=0.181818;ABP=22.3561;AC=1;AF=0.166667;AN=6;AO=4;CIGAR=1X;DP=40;DPB=40;DPRA=2.44444;EPP=11.6962;EPPR=81.1833;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=154;QR=1367;RO=36;RPL=0;RPP=11.6962;RPPR=81.1833;RPR=4;RUN=1;SAF=4;SAP=11.6962;SAR=0;SRF=36;SRP=81.1833;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:5:5,0:5:192:0:0:0,-1.50515,-17.65 0/0:13:13,0:13:502:0:0:0,-3.91339,-45.5285 0/1:22:18,4:18:673:4:154:-7.6108,0,-54.2771 dDocent_Contig_15860 29 . A G 567.412 . AB=0.305085;ABP=22.4799;AC=2;AF=0.333333;AN=6;AO=18;CIGAR=7M1X14M;DP=60;DPB=56.5909;DPRA=29.5;EPP=42.0968;EPPR=35.5824;GTI=0;LEN=1;MEANALT=5;MQM=60;MQMR=60;NS=3;NUMALT=4;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=692;QR=599;RO=15;RPL=0;RPP=42.0968;RPPR=35.5824;RPR=18;RUN=1;SAF=18;SAP=42.0968;SAR=0;SRF=15;SRP=35.5824;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|1:48:10,5,3,11,16:10:400:5,3,11,16:188,116,446,614:-51.2052,-38.8147,-70.2636,-44.6873,-62.2409,-76.7385,-17.4278,-34.9839,-40.8566,-47.0736,-3.83202,-21.3878,-27.2597,0,-31.9709 0|0:1:0,0,0,1,0:0:0:0,0,1,0:0,0,41,0:-4.09457,-4.09457,-4.09457,-4.09457,-4.09457,-4.09457,-0.30103,-0.30103,-0.30103,0,-4.09457,-4.09457,-4.09457,-0.30103,-4.09457 0|1:11:5,0,2,1,2:5:199:0,2,1,2:0,73,41,78:-4.91391,-6.41906,-22.8157,-0.459771,-16.8559,-16.2539,-3.02803,-19.4291,-13.4694,-19.1281,0,-16.4031,-10.4443,-13.0158,-15.801 dDocent_Contig_15861 149 . T A 191.302 . AB=0.264706;ABP=19.3602;AC=3;AF=0.5;AN=6;AO=9;CIGAR=1X;DP=34;DPB=34;DPRA=0;EPP=22.5536;EPPR=57.2971;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=364;QR=986;RO=25;RPL=0;RPP=22.5536;RPPR=57.2971;RPR=9;RUN=1;SAF=0;SAP=22.5536;SAR=9;SRF=0;SRP=57.2971;SRR=25;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:20:13,7:13:516:7:283:-19.8224,0,-40.7644 0/1:4:3,1:3:116:1:40:-2.79156,0,-9.61287 0/1:10:9,1:9:354:1:41:-1.08427,0,-29.2062 dDocent_Contig_15862 18 . T C 1470.56 . AB=0.195402;ABP=73.1214;AC=0;AF=0;AN=6;AO=17;CIGAR=1X2M1X;DP=93;DPB=93;DPRA=0;EPP=39.9253;EPPR=59.4686;GTI=0;LEN=1;MEANALT=2.5;MQM=60;MQMR=60;NS=3;NUMALT=2;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=680;QR=1002;RO=26;RPL=0;RPP=39.9253;RPPR=59.4686;RPR=17;RUN=1;SAF=17;SAP=39.9253;SAR=0;SRF=26;SRP=59.4686;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|0:49:14,13,21:14:532:13,21:518,847:-65.6099,-27.1676,-66.874,0,-0.95338,-37.299 0|0:6:1,0,5:1:40:0,5:0,193:-15.9336,-16.2346,-19.532,0,-3.69465,-2.1895 0|0:38:11,4,23:11:430:4,23:162,903:-70.9379,-60.889,-95.036,0,-21.9793,-28.4177 dDocent_Contig_15863 1 . N G 315.167 . AB=0;ABP=0;AC=4;AF=1;AN=4;AO=10;CIGAR=1X;DP=10;DPB=10;DPRA=0;EPP=24.725;EPPR=0;GTI=0;LEN=1;MEANALT=1;MQM=53.6;MQMR=0;NS=2;NUMALT=1;ODDS=0;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=351;QR=0;RO=0;RPL=0;RPP=24.725;RPPR=0;RPR=10;RUN=1;SAF=0;SAP=24.725;SAR=10;SRF=0;SRP=0;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 1/1:2:0,2:0:0:2:73:-5.87071,-0.60206,0 ./.:.:.:.:.:.:.:. 1/1:8:0,8:0:0:8:278:-25.3444,-2.40824,0 dDocent_Contig_15868 112 . T C 124.345 . AB=0.296296;ABP=12.7417;AC=2;AF=0.333333;AN=6;AO=9;CIGAR=1X;DP=43;DPB=43;DPRA=0;EPP=22.5536;EPPR=76.8404;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=296;QR=1111;RO=34;RPL=0;RPP=22.5536;RPPR=76.8404;RPR=9;RUN=1;SAF=0;SAP=22.5536;SAR=9;SRF=0;SRP=76.8404;SRR=34;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:18:15,3:15:470:3:83:-2.32617,0,-37.1807 0/1:9:4,5:4:131:5:177:-13.5677,0,-9.40467 0/0:16:15,1:15:510:1:36:0,-1.2182,-42.6259 dDocent_Contig_15869 113 . C G 68.2387 . AB=0;ABP=0;AC=2;AF=0.333333;AN=6;AO=2;CIGAR=1X;DP=24;DPB=24;DPRA=0.181818;EPP=7.35324;EPPR=50.7827;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=70;QR=763;RO=22;RPL=0;RPP=7.35324;RPPR=50.7827;RPR=2;RUN=1;SAF=0;SAP=7.35324;SAR=2;SRF=0;SRP=50.7827;SRR=22;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:16:16,0:16:553:0:0:0,-4.81648,-50.0973 1/1:2:0,2:0:0:2:70:-6.6474,-0.60206,0 0/0:6:6,0:6:210:0:0:0,-1.80618,-19.2425 dDocent_Contig_15870 21 . C A 443.201 . AB=0.352941;ABP=12.5903;AC=3;AF=0.5;AN=6;AO=18;CIGAR=1X;DP=51;DPB=51;DPRA=0;EPP=42.0968;EPPR=74.6689;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=3.46945e-18;PAIRED=0.166667;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=712;QR=1323;RO=33;RPL=0;RPP=42.0968;RPPR=74.6689;RPR=18;RUN=1;SAF=18;SAP=42.0968;SAR=0;SRF=33;SRP=74.6689;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:17:10,7:10:393:7:280:-20.4517,0,-30.6053 0/1:20:16,4:16:648:4:161:-8.8543,0,-52.632 0/1:14:7,7:7:282:7:271:-20.537,0,-21.5382 dDocent_Contig_15871 36 . C T 222.703 . AB=0.18;ABP=91.9538;AC=1;AF=0.166667;AN=6;AO=23;CIGAR=1X;DP=193;DPB=193;DPRA=0;EPP=52.9542;EPPR=290.411;GTI=0;LEN=1;MEANALT=1;MQM=41.6957;MQMR=31.3059;NS=3;NUMALT=1;ODDS=0;PAIRED=0;PAIREDR=0.0882353;PAO=0;PQA=0;PQR=0;PRO=0;QA=771;QR=5675;RO=170;RPL=0;RPP=52.9542;RPPR=372.161;RPR=23;RUN=1;SAF=0;SAP=52.9542;SAR=23;SRF=10;SRP=290.411;SRR=160;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:100:82,18:82:2781:18:609:-23.7932,0,-156.759 0/0:38:36,2:36:1212:2:67:0,-5.18848,-79.1316 0/0:55:52,3:52:1682:3:95:0,-7.84541,-104.492 dDocent_Contig_15872 27 . T C 133.267 . AB=0.315789;ABP=8.61041;AC=2;AF=0.333333;AN=6;AO=6;CIGAR=1X;DP=25;DPB=25;DPRA=1.58333;EPP=16.0391;EPPR=44.2683;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=242;QR=750;RO=19;RPL=0;RPP=16.0391;RPPR=44.2683;RPR=6;RUN=1;SAF=6;SAP=16.0391;SAR=0;SRF=19;SRP=44.2683;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:16:11,5:11:439:5:202:-13.7454,0,-35.0438 0/0:6:6,0:6:229:0:0:0,-1.80618,-20.9725 0/1:3:2,1:2:82:1:40:-3.09259,0,-6.87659 dDocent_Contig_15873 8 . A G 2462.28 . AB=0.680328;ABP=37.4691;AC=3;AF=0.5;AN=6;AO=83;CIGAR=1X;DP=122;DPB=122;DPRA=0;EPP=183.243;EPPR=87.6977;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=6.93889e-18;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=3195;QR=1479;RO=39;RPL=0;RPP=183.243;RPPR=87.6977;RPR=83;RUN=1;SAF=83;SAP=183.243;SAR=0;SRF=39;SRP=87.6977;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:94:19,75:19:727:75:2883:-231.345,0,-37.4639 0/1:7:3,4:3:114:4:156:-12.3101,0,-8.52501 0/1:21:17,4:17:638:4:156:-8.09566,0,-51.4276 dDocent_Contig_15875 7 . A G 59.3321 . AB=0.209302;ABP=34.5724;AC=3;AF=0.5;AN=6;AO=9;CIGAR=1X;DP=43;DPB=43;DPRA=0;EPP=22.5536;EPPR=76.8404;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=242;QR=1296;RO=34;RPL=0;RPP=22.5536;RPPR=76.8404;RPR=9;RUN=1;SAF=9;SAP=22.5536;SAR=0;SRF=34;SRP=76.8404;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:14:12,2:12:463:2:47:-0.248514,0,-37.8069 0/1:25:21,4:21:795:4:108:-2.46019,0,-64.3486 0/1:4:1,3:1:38:3:87:-6.91437,0,-2.59315 dDocent_Contig_15876 39 . A T 79.59 . AB=0.235294;ABP=13.3567;AC=1;AF=0.166667;AN=6;AO=4;CIGAR=1X;DP=27;DPB=27;DPRA=3.4;EPP=11.6962;EPPR=52.9542;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=0.956522;PAO=0;PQA=0;PQR=0;PRO=0;QA=158;QR=919;RO=23;RPL=0;RPP=11.6962;RPPR=52.9542;RPR=4;RUN=1;SAF=4;SAP=11.6962;SAR=0;SRF=23;SRP=52.9542;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:17:13,4:13:524:4:158:-9.48115,0,-42.3889 0/0:1:1,0:1:41:0:0:0,-0.30103,-4.09457 0/0:9:9,0:9:354:0:0:0,-2.70927,-32.2209 dDocent_Contig_15877 67 . A G 76.4943 . AB=0.4;ABP=3.87889;AC=1;AF=0.166667;AN=6;AO=4;CIGAR=1X;DP=22;DPB=22;DPRA=1.66667;EPP=11.6962;EPPR=42.0968;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=135;QR=605;RO=18;RPL=4;RPP=11.6962;RPPR=42.0968;RPR=0;RUN=1;SAF=4;SAP=11.6962;SAR=0;SRF=18;SRP=42.0968;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:7:7,0:7:234:0:0:0,-2.10721,-21.3881 0/0:5:5,0:5:170:0:0:0,-1.50515,-15.6348 0/1:10:6,4:6:201:4:135:-9.47328,0,-15.4092 dDocent_Contig_15878 25 . C T 133.344 . AB=0.149254;ABP=74.6041;AC=2;AF=0.333333;AN=6;AO=14;CIGAR=1X;DP=174;DPB=174;DPRA=0;EPP=33.4109;EPPR=350.446;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=565;QR=6406;RO=160;RPL=0;RPP=33.4109;RPPR=350.446;RPR=14;RUN=1;SAF=14;SAP=33.4109;SAR=0;SRF=160;SRP=350.446;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/0:107:103,4:103:4152:4:162:0,-17.2433,-358.656 0/1:24:21,3:21:838:3:116:-3.59268,0,-68.5061 0/1:43:36,7:36:1416:7:287:-13.2609,0,-114.739 dDocent_Contig_15880 13 . G A 93.3041 . 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AB=0.285714;ABP=5.80219;AC=1;AF=0.166667;AN=6;AO=2;CIGAR=2X;DP=82;DPB=82;DPRA=0.186667;EPP=7.35324;EPPR=176.728;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=77;QR=3033;RO=80;RPL=0;RPP=7.35324;RPPR=176.728;RPR=2;RUN=1;SAF=2;SAP=7.35324;SAR=0;SRF=80;SRP=176.728;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0|0:37:37,0:37:1396:0:0:0,-11.1381,-125.925 0|1:7:5,2:5:193:2:77:-5.20193,0,-15.6341 0|0:38:38,0:38:1444:0:0:0,-11.4391,-130.241 dDocent_Contig_15882 13 . G A 271.379 . AB=0.141975;ABP=183.377;AC=2;AF=0.333333;AN=6;AO=26;CIGAR=1X;DP=232;DPB=232;DPRA=0;EPP=59.4686;EPPR=441.648;GTI=0;LEN=1;MEANALT=1.66667;MQM=50.8846;MQMR=47.3069;NS=3;NUMALT=1;ODDS=0;PAIRED=0;PAIREDR=0.514851;PAO=0;PQA=0;PQR=0;PRO=0;QA=1020;QR=8003;RO=202;RPL=0;RPP=59.4686;RPPR=441.648;RPR=26;RUN=1;SAF=26;SAP=59.4686;SAR=0;SRF=202;SRP=441.648;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:120:104,14:104:4136:14:547:-13.1838,0,-291.259 0/1:42:33,9:33:1313:9:351:-17.4769,0,-70.9135 0/0:70:65,3:65:2554:3:122:0,-9.75752,-183.743 dDocent_Contig_15885 18 . C T 401.299 . AB=0.405405;ABP=5.88603;AC=2;AF=0.333333;AN=6;AO=15;CIGAR=1X;DP=43;DPB=43;DPRA=3.08333;EPP=35.5824;EPPR=63.8115;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=601;QR=1135;RO=28;RPL=0;RPP=35.5824;RPPR=63.8115;RPR=15;RUN=1;SAF=15;SAP=35.5824;SAR=0;SRF=28;SRP=63.8115;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:25:12,13:12:488:13:533:-40.7901,0,-36.7455 0/0:6:6,0:6:239:0:0:0,-1.80618,-21.8848 0/1:12:10,2:10:408:2:68:-2.84227,0,-33.4682 dDocent_Contig_15886 11 . A T 102.186 . AB=0.263158;ABP=12.2676;AC=1;AF=0.166667;AN=6;AO=5;CIGAR=1X;DP=28;DPB=28;DPRA=4.22222;EPP=13.8677;EPPR=52.9542;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=3;NUMALT=1;ODDS=0;PAIRED=0.8;PAIREDR=1;PAO=0;PQA=0;PQR=0;PRO=0;QA=190;QR=904;RO=23;RPL=0;RPP=13.8677;RPPR=52.9542;RPR=5;RUN=1;SAF=5;SAP=13.8677;SAR=0;SRF=23;SRP=52.9542;SRR=0;TYPE=snp;technology.Illumina=1 GT:DP:AD:RO:QR:AO:QA:GL 0/1:19:14,5:14:547:5:190:-11.7413,0,-43.8479 0/0:6:6,0:6:244:0:0:0,-1.80618,-22.3386 0/0:3:3,0:3:113:0:0:0,-0.90309,-10.5369 dDocent_Contig_15887 7 . A G 379.638 . 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