# UCI ACS colorectal polyp study: This repository include the larger files produced from the pilot polyp study. The files are as follows: contig_table.txt - This file contains the per sample abundances for each open reading frame. Open reading frames were produced from assembled contiguous sequences using Prodigal. mic_cense_genome_equivs_merged.txt - This file contains the genome equivalents produced from MicrobeCensus used to normalize the open reading frame abundances. RPK_pathabundance.tsv - This file contains the normalized per sample pathway abundances produced by humann3. eggnog.emapper.annotations - This file contains the eggNOG annotations for each open reading frame. Smaller files like the taxonomy tables, metadata, and R scripts used to analyze 16S, ITS, and Shotgun data can be found here: https://github.com/Javelarb/ACS_polyp_study Raw data is available at: https://www.ncbi.nlm.nih.gov/bioproject/PRJNA745329/ Manuscript: https://doi.org/10.1101/2021.07.20.453135 For all other inquiries, please email Julio Avelar-Barragan at javelarb@uci.edu.