>psbA:trnK-UUU >outgroup GTAAGATCTTGGTTTATTCAAATTGCAAGGACTCCCAAGCACACGTATTAACTAGAAAGAAAATAGATAATAGAAGGCTTGTTATTTAACAGTATAACATAGTCTATATACCAATGTCAACCAAGCCAGCCCCAACGATTAGATTTCCATATAACTTCATTTATCAAATCCAAAAATTTTGGATTGTACATGAAGTGAGTAAAAATTCAATACTCAGATTGCTCTTTTCTAT-------- >Lolium_multiflorum GTAAGATCTTGGTTTATTCAAATTGCAAGGACTCCCAAGCACACATATTAACTATAAATAATATAGATAATAGAAGGCTTGTTATTTAACAGTATAACATAGACTATATACCAATGTCAACCAAATCAGCTC-AAGGATTGGATATCCATATAGCTAAATTAACCAAA-CAAAAAATTTTG-----TAAATGAAGTGAGTCCAAGTTAAAAACTAAGATTGGTCTTTTTTAT-------- >Lolium_perenne GTAAGATCTTGGTTTATTCAAATTGCAAGGACTCCCAAGCACACATATTAACTATAAATAATATAGATAATAGAAGGCTTGTTATTTAACAGTATAACATAGACTATATACCAATGTCAACCAAATCAGCTC-AAGGATTGGATATCCATATAGCTAAATTAACCAAA-CAAAAAATTTTG-----TAAATGAAGTGAGTCCAAGTTAAAAACTAAGATTGGTCTTTTTTATTTTCCATA >trnK-UUU:rps16 >outgroup AGGATCTCTTAGTCTTAGATACAATCGAAATCCAAAAATCGATGGAATTACACCGGACACTCCTGTCAAAATATTGAATTAGCAAGACATCAAAAGAAAGA-TTTATCACCCATTAAAAATACTCAAATACCAAAAAGAACAGATGCAGTTAAATTTCACTAAGGGTAAAAAAGGGG-------AGCCAATTACAATGGCAAAATTGTCATTTTTTTGGCAATTTGGATTTCTTTAAATCACAAAATCTTGTATGCTTGTATGAGAGTATATGCAAGGGGGGCAACCCTATCATTTGAGCGAAGTGTAGACAGAAATACCTAA-TATGGAAT-----------------------------GACGATAAAGAGACCCATCTATCTACAAATTCTAGATGTTCAATAGACCTTTGTCAATGGAAATACAATGC----------AATTAGATACAAAAAGGAAATAAAATAAGGACTTTTGTTGGATTGGCACGACATAAATGCAGCAAAAAAAATATGACTAAAAAAGAGGCAAATTGTGTCTAAATAATTA-------AGGGGTACTAACGACCCTCTCCCACTTT-TTTATTCATTTAGTTCTTCAA >Lolium_multiflorum --------AAGATCTTAGATACGATCGAAATCAAAAAATCAATGGAATTACACCGCCCGCTTCTGTCAAAACATTGAATTAGCAAGACATCAAAAGAAAGAATTTATCGACCATGAAAAACACTCAAATGCCAAAATGAACAGGTCCGGTTAAATTCCACTAAGGTTAAAAAAAGAACGACCCCAACCAACCACGATGGCAAAACGCTCCTTTTTTTAGCTATTTTTATTTTAATAAAA---AAAATCTTGTATG--------AAAATACATGCAAGAGGAACACCCTTATCATTTGAGCGAAGTGTAGGCAGAAAAATATAAATATGCAGTAAGGTCTATTGAACAAATAGAATTTGTAGGAGGATAAAGAGACCTATCTATCTACAAATTCTATTTGTTCAATAGACCTTTGTCAATGGAAATACAATGGTAAGAAAACAAATTAGATAGAAAAAGTAAATAAAATAGGGGCTTATATTGGATTGGCACGACATAAATCCA--------AATAGGACTAAGAAGGAGGTAAATTATGTCTAAATAATTAGAGAACGAGGAATACTAGTGATCTTCTTCTACTTTATTTATTCAT------------ >Lolium_perenne GATAAAAAAAGATCTTAGATACGATCGAAATCCAAAAATCAATGGAATTACACCGCCCGCTTCTGTCAAAACATTGAATTAGCAAGACATCAAAAGAAAGAATTTATCGACCATGAAAAACACTCAAATGCCAAAATGAACAGGTCCGGTTAAATTCCATTAAGGTTAAAAAAAGAACGACCCCAACCAACCACGATGGCAAAACGCTCCTTTTTTTAGCTATTTTTATTTTAATAAAA---AAAATCTTGTATG--------AAAATACATGCAAGAGGAACACCCTTATCATTTGAGCGAAGTGTAGGCAGAAAAATATAAATATGCAGTAAGGTCTATTGAACAAATAGAATTTGTAGGAGGATAAAGAGACCTATCTATCTACAAATTCTATTTGTTCAATAGACCTTTGTCAATGGAAATACAATGGTAAGAAAACAAATTAGATAGAAAAAGTAAATAAAATAGGGGCTTATATTGGATTGGCACGACATAAATCCA--------AATAGGACTAAGAAGGAGGTAAATTATGTCTAAATAATTAGAGAACGAGGAATACTAGTGATCTTCTTCTACTTTATTTATTCAT------------ >rps16:trnQ-UUG >outgroup ----ACATTCCTCTAATTTCATTGCAAAATGGTATCGAAAATTGATCCAATATGGATGGAATCATGAATAGTCATTGCTTT-------TGTATACTAATTCAAACTTGCTATCTATGGAGAAATATGGATAAAAGAAA-TAAGTATTTTCGGGGAACGCTCTGCAAAGATCCAATTTATTTAAACCCGTATTCTATCATATGAATGAAACATAGTTCGAATGAATGAAACATAGTTCGAAAAAGAGGAATAAAATAGTTTGCTTAAGATTTATTTATTATGGAATTTCCATTCTCAACAGGGAACTCAAGATGATCAATCCTGAAATGA-----GAAGGATCGACTCTTCCCCAACAAATAAACTAGCAACCTCCAAAAAAGTTGAATTAATTAAATTA----------ATTA----------ATATATTTTTCTATAACAA--------------------------------AAACAATTAACTAT--TAACCAA-ATAAGCTATGCCAATGAAAAGATTAGTAGTTTTGGGGTAGTTATAAAATTCTCATAT--------TTCTTCGACTCGAATAACAAAAGAA--AGAATTTTTTTTTTTTCAATCAATTCGAAAGTCGAGTAGACAGAATATATTA-ATTTATCTCTAATCCTCACATTCCACTGATTTATAAACGGATATTTGCAAATCGGATAATACCTAAAATAAAAAAATGGAGTCCCTATCCGTAGAATGGAATGGAAACCCTTTTCTTTTTTCTCGCGCCGATCTTGGTCAAAAGTTTTAAGGCCTGTGCTGAAACTAAAAACATCCTACTCTTTAATCTGGCCATGAAACATAGAATTAGGATACCCCCCTTTTTTTTACTTATCTTTAGTTTGGTGAAAATAAATAAGGGGATACTTCTTTTCTTTCGTATTGGGTGTCAAATGTATCCTGTAAGAATTCCCACTTCATAGATACGGAACATAAAGTTTATCTAAGAAGTTCAAATTTCTAAACACATATTCAAAACACATATGAGTAATGAGTAGTAGGGGCATATCCTGAATGTGCCTGATAGACAAAAATATTTCAGGAAAATAAAGATATTAAATTTGACTGGACTTGACACTTTTTTTTGTTTTCTGAGAAAGAAAATGAATGCTTAGAAATGCATCTAAGCTACGAGTTCATAAGATCTAATTATTCTCCTTAATAAACTTTTGTGTTGTGCAGGGCACAATACGATTCTATCTTTCGCTTCATCAGAAAAAA >Lolium_multiflorum ACAAACATTCCTCT--TTTCATTGCAAAGTGGTATAGAGAATTGATCCAATATGGATGGAATCGTGAATAGTCATTGGTTTAGTTTTGTGTATACTAATTCAAACTTGCTGTATATGGAGTAATATGGATAAAAGAAAGTAAGTTTTTATTGGGAAAGCCTCC----GATCCTATTTATTTAAGCCCATATTATATCATATGAATGAAACATAGTTCGAA--------------------AAAGACGACTAAACGGGTTTGCTTAAGACTTATTTATTATT-AATATTAAC---CACCAGACGGCTCGAGATCATCAATTTTGAAGTGAGAAGAGAAGGATCCACTCTTCCCCAATAAATAAACTATCAACCTTCAAAAAAGTTTAATTAATTTAATTACTATATTAGAATTAGATTAGCAATATATTTCTTTCCTTAAGAA-------------------------------AAAAAAAAGAACTATAGTAACTAACATAAAATACTCCAATGAAAAGATTGAAAGTTTTTGA-TAGTTAGAGAATTCTCGTACTTCCGTACTTCTTCGCCTTGAATACAAAAAAAAGTAAGAAAAAATATGATTAAGTGAATTTAAGTGATTTATAGTAGAGGCATATCCTAAATGTGACTGATAGACCCAATTTTTTCATGAAAATAAAGATATTC---AATTTGATTTGACTGGACTTAAGACTTT--ATTATGTTTTCTGAGAAAGAAAGTGAATGCTTAGAAATGCCTCTAATCTAAGAGTTCATAAGATACCATTATTCTCTTTAATAAATTAATAAACTTTTG-TCTTTTGCGGAGCACTATCAGAAACAA------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ >Lolium_perenne ACAAACATTCCTCT--TTTCAGTGCAAAGTGGTATAGAGAATTGATCCAATATGGATGGAATCGTGAATAGTCATTGGTTTAGTTTTGTGTATACTAATTCAAACTTGCTGTATATGGAGTAATATGGATAAAAGAAAGTAAGTTTTTATTGGGAAAGCCTCC----GATCCTATTTATTTAAGCCCATATTATATCATATGAATGAAACATAGTTCGAA--------------------AAAGACGACTAAACGGGTTTGCTTAAGACTTATTTATTATT-AATATTAAC---CACCAGACGGCTCGAGATCATCAATTTTGAAGTGAGAAGAGAAGGATCCACTCTTCCCCAATAAATAAACTATCAACCTTCAAAAAAGTTTAATTAATTTAATTACTATATTAGAATTAGATTAGCAATATATTTCTTTCCTTTAGAATTAGATTAGCAATATATTTCTTTCCTTAAGAAAAAAAAAGAACTATAGTAACTAACATAAAATACTCCAATGAAAACATTGAAAGTTTTTGA-TAGTTAGAGAATTCTCGTACTTCCGTACTTCTTCGCCTTGAATACAAAAAAAAGTAAGAAAAAATATGATTAAGTGAATTTAAGTGATTTATAGTAGAAGCATATCCTAAATGTGACTGATAGACACAATTTTTTCATGAAAATAAAGATATTC---AATTTGATTTGACTGGACTTAAGACTTT--ATTATGTTTTCTGAGAAAGAAAGTGAATGCTTAGAAATGCCTCTAATCTAAGAGTTCATAAGATACCATTATTCTCTTTAATAAATTAATAAACTTTTG-TCTTTTGCGGAGCACTATCAGAAACAAT----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- >trnQ-UUG:psbK >outgroup TTCATTTCGTTTTATGCGACACTAATAAACACTATTATTCTTATATAATATTCGTCAATCCCACTTCAATTACCTAAAAAATGAGGCATATTTTATTGCTAGGATTCTAGACATGCGGATAATATAGAATCCAAAAAATGCATTGATCATTACATGGAATTCTATTAAGATATTATATGAAGGTCGAATTTCTTCCATTCTCATTTGAGAATGCGAATACAAGGAGGTATTTTTTTTTTTGGAAAGTCCGAAGAAAAAAGGATTTTGAATCCACCTTTTCTTTTGCTTTTTCCCTTATAAAAATAACTCAATCAAAATTCAATTATTTACTCTACAAGAACGAAATGCTTGTT >Lolium_multiflorum -----TTCGTTTTATGCGACACTAATAAACACTATTATGTTTATTTGTTATTCGTCAATCCCATTTCAATTATATAAAAAATGAGGAATATTCTCTTGCTAGTATTCTAGACATGCAGATAATATAGAATCAAAAAAATGCATTGATCATTACATGGAATTCTATTAAGATATTATATGAAAGTCGAATTTATTCCACTCACATTCGAGAGTGCGAATACAAGGAGGTATTTTGTGTTTGGGAAAGTACGAAGAAAAAAG-ATTTTGAATCTGCCTTCTC-----CTTTTTCCCTTAGAAAAATAACTCAATCAAAATCCAATTATTTACTCTACAAGAATGAAATGCTTGTT >Lolium_perenne -----TTCGTTTTATGCGACACTAATAAACACTATTATGTTTATTTGTTATTCGTCAATCCCATTTCAATTATATAAAAAATGAGGAATATTCTCTTGCTAGTATTCTAGACATGCAGATAATATAGAATCAAAAAAATGCATTGATCATTACATGGAATTCTATTAAGATATTATATGAAAGTCGAATTTATTCCACTCACATTCGAGAGTGCGAATACAAGGAGGTATTTTGTGTTTGGGAAAGTACGAAGAAAAAAG-ATTTTGAATCTGCCTTCTC-----CTTTTTCCCTTAGAAAAATAACTCAATCAAAATCCAATTATTTACTCTACAAGAATGAAATGCTTGTT >psbK:psbI >outgroup ATCTTTA-----CTATTCTGTCTGCCAAATTGAATAATGTATTTATTCCCAAAAAAATTGAAAATAAAAATGGATAAGAGCTGAGAAGTCTTATATT--------ATGAACTTTCGATTCTAAAATTCAAATTCTTCCGCATTGAATGTATAGCTGCAACAATAAATTTAGATCAGCCTTTCTATTCC-CTGCGCCTACGTTGAGCAGGTACCGTTAGGTACCCACACAATACCTAAACAAATTTTTTATATTGATAAGAGTGCTTATTATAAAGCAATTCTTGCAATTTTTTTTTTAGAATTGATTTTTGCATTTTTTTTATTTTAGGTGTCAAAATAAACAAAACCCATCCTAGTGGATCCGTGTGGTAAGAAAAAATGGGTAATCTATTCCTTAACAAAAAAAATCTTGGAGATTATGTA >Lolium_multiflorum ATGTTTAGTACTCTATCCTATCTACCAAATTGAATGGTGTTTTCATTCCAAAAAA---TGAAAAAAAAAATGGGTAAAAGGCGAGAACTTTTATATTTTTATATTATGAACCTTCAACTCTAAAATGCAAATTCTTCTACATTGAATGGATAGCTGCATCAATAAATTTTGATCAGCCTTTCTACCCTTCTGCACCTACGTTGAGCAGGT----TTAGGTACCTACACAATACCTAACAATATTTTTTATATTGATAAGAGTGCTTATTATAAATGAATTCTTCCAATTTTTTTTCAAGAATTCATTTTTGCATTTTGAACTATAAAAATAA-AAAATAAACAAAATTCATCGTAGTGGATCCATGTGGTAAGGAAAAACTGGTAATCTATTCCTTAA--AAAAAAATCTTGGAGATTATGTA >Lolium_perenne ATGTTTAGTACTCTATCCTATCTACCAAATTGAATGGTGTTTTCATTCCAAAAAA---TGAAAAAAAAAATGGGTAAAAGGCGAGAACTTTTATATTTTTATATTATGAACCTTCAACTCTAAAATGCAAATTCTTCTACATTGAATGGATAGCTGCATCAATAAATTTTGATCAGCCTTTCTACCCTTCTGCACCTACGTTGAGCAGGT----TTAGGTACCTACACAATACCTAACAATATTTTTTATATTGATAAGAGTGCTTATTATAAATGAATTCTTCCAATTTTTTTTCAAGAATTCATTTTTGCATTTTGAACTATAAAAATAA-AAAATAAACAAAATTCATCGTAGTGGATCCATGTGGTAAGGAAAAACTGGTAATCTATTCCTTAA--AAAAAAATCTTGGAGATTATGTA >psbI:trnS-GCU >outgroup -AATCCAAAATTTTTGGGAATTTTTTCTTACAAATTGGATTTATTTCGTACATTTATCTATGAGAAAATCCGGGGGTCAGAATTCCTTACAATTTGAAAGTCCCAAATGATCCGAGGGGG >Lolium_multiflorum AATTCCATTTTTTTTTT--ATTTTTTCTTACAAATTGGATTTGGTTCGTACATTTATCTATGAGCAAATCCGGGGGTCAGAATTCCTTCCAATTTGAAAGTCCAAAATGATCCGAGGGAG >Lolium_perenne AATTCCATTTTTTTTTTTCATTTTTTCTTACAAATTGGATTTGGTTCGTACATTTATCTATGAGCAAATCCGGGGGTCAGAATTCCTTCCAATTTGAAAGTCCAAAATGATCCGAGGGAG >trnS-GCU:psbD >outgroup CGTTCCAAATTGAAAGGTTTTCGTAATATGACAGAGGCAAGAAATAACGAT----------------------------AGTGTATAAAAATTATATTGCCAATTCCATTTTCATTATATTCTTTTTTCTTAATGTTAATAAAAAAAAGAAGAAAATTCTTGTTTTTTCTTTCCAAAATTCGATATAGGCTGAGAGACAATCAGATATATTTTCTCTTCAACGGGCAGTTCCATATAGGATTTGTTATTTGTTAGAATAAAACAAGCAGGTTCTA------------AAAAAACTCTTTTTTTT----------TTATTTATCCA-----CAAAAAAGGTTCTTATCAAACCCACAATAAAAATGGAAAGAAAAATAAAGTAAGTAGACCTGACCCCTTGAATGATGCCTCTATCCGCTATTCTGATATATAAATTCGATGTGGATGAAATTGGTGTATAAGCGGATTTTTTGT-ATTTCCTTAAACTTAGATCGCGCAAGGCAAGAATTTTTCGCTATTTACGATTTCATATTCTTGTTACTAGACGTTCTATAGGAATAAGAAGAAATCGCAACTCTTTTCCGTTACACATAAAAA-GGGTTTCAAAAGTCCATTTTTCTTTTCAATGTCTTTCTTTTTTTTTCAGAATCCTGTTTTTGTTCTTCCACCCATGCAATAGAGAGCGAATGAGAAAAGAGGGGTTATTTTTTTTCTC----TTAAAAGAAAAGATAGGCTTTGAA--TTGAAATAGGAATCATGGAATAATGCTGAATTCAAATGTTTATTTCTTTATTTCTATAGTATAAGAAAATTTAATTGAATGAAATTCGTGGATTTACCACGACCTTGGTTGTGACCCCATAGATCAAAATGCAAAATTTCTATCTTCGAGACCTTTGAAAAAGGGCATTGAACGAGAAAGAAGTCGTCCACAGATAATCAAACTATCGTATGCCCTGGAAGTAATATGAGATGCTCGGAAATGGTTGAAGTAATTGAATAGGAGGATCACT >Lolium_multiflorum TGTTCCAAATCAAAAGGTTTACGTGATATGATAGAGACAAGAAATAAGGATTGCAAAAACCCTTTTTTTTTCTTTCAAAAGTATATAAAAATTATATTGCCAATTCCATTTTAGTTCTATTCTTTTTTCTTAATGTTAATAAAAAAAATAAGAAAATTCTTGTTTTTTCTTTCTAAAAACCAATATCGGCCTAGAGACAATCAGATAGATTTTCTCTTTAGCGGGCATTTCCCTATAAGACTTGTTAT-------AATAAAACAAGCAGGTTATATATAAAAAAAAGAAAAAACGCTTTTTTGTCGATTGTCAATTATTTATCAAGAAAGCAAAAAGGGTTCTTATCAAACCCAACATAAAATTGGAAAGAACCATAAAGTAAGTAGATCTGACTCCTTGAATAATGCCTCTATCCGCTATTCTGATATATAAATTCGATGTGGATCAAATTG---TATAAGCGAATTTTTTTTTATTTCCTTAGACTTATACCGCGCAAGACAAGAATTTTTTTT-ATTTACGATTTTATATTCTTGTTACTAGATGTTCTATAGGAATAAGAAGAAATCGCAACTCCTTTCCGCTACACATAAAAATAGATTTCGAAAGTCC--TTTTTTTTTTAGAATCCTCCTTTTCT------------------GTTCTTCCACCCATGAAATAGAGAGGGAATGAGAATATAGGGGTTACTTTTATTTTCATTTTTCCCTTAAAAGATAGGCTTTCAAATTTCAAATAGGAGTCATGGAATAATGCTGAATTGAAATGTTTATTTCT--------AGAGTATAAGAAAAACAAATCGAATAAAATTCATGGATTTACCACGACCCCGGTTGTGCCTCCATAGATAAAAATAAAAAATTTATATCTTCGAGACCATTGAAAAAGGGCATTGAACGAGAAACAAATCGTCCACAGATAATAAAACTATCATATGCCTTGGAAGTGACGTGAGGTGCTCGGAAATGGTTGAAGTAATTGAATAGGAGGATCACT >Lolium_perenne TGTTCCAAATCAAAAGGTTTACGTGATATGATAGAGACAAGAAATAAGGATTGCAAAAACCCTTTTTTTTTCTTTCAAAAGTATATAAAAATTATATTGCCAATTCCATTTTAGTTCTATTCTTTTTTCTTAATGTTAATAAAAAAAATAAGAAAATTCTTGTTTTTTCTTTCTAAAAACCAATATCGGCCGAGAGACAATCAGATAGATTTTCTCTTTAGCGGGCATTTCCCTATAAGACTTGTTAT-------AATAAAACAAGCAGGTTATATATAAAAAAAAGAAAAAACGCTTTTTTGTCGATTGTCAATTATTTATCAAGAAAGCAAAAAGGGTTCTTATCAAACCCAACATAAAATTGGAAAGAACCATAAAGTAAGTAGATCTGACTCCTTGAATAATGCCTCTATCCGCTATTCTGATATATAAATTCGATGTGGATCAAATTG---TATAAGCGAATTTTTTTTTATTTCCTTAGACTTATACCGCGCAAGACAAGAATTTTTTTTTATTTACGATTTTATATTCTTGTTACTAGATGTTCTATAGGAATAAGAAGAAATCGCAACTCCTTTCCGCTACACATAAAAATAGATTTCGAAAGTCC--TTTTTTTTTTAGAATCCTCCTTTTCT------------------GTTCTTCCACCCATGAAATAGAGAGGGAATGAGAATATAGGGGTTACTTTTATTTTCATTTTTCCCTTAAAAGATAGGCTTTCAAATTTCAAATAGGAGTCATGGAATAATGCTGAATTGAAATGTTTATTTCT--------AGAGTATAAGAAAAACAAATCGAATAAAATTCATGGATTTACCACGACCCCGGTTGTGCCTCCATAGATAAAAATAAAAAATTTATATCTTCGAGACCATTGAAAAAGGGCATTGAACGAGAAACAAATCGTCCACAGATAATAAAACTATCATATGCCTTGGAAGTGACGTGAGGTGCTCGGAAATGGTTGAAGTAATTGAATAGGAGGATCACT >psbD:trnS-UGA >outgroup GGAACTTTCGTTTTAGCTGGTCGTGACCAAGAAACCACCGGCTTTGCTTGGTGGGCTGGGAATGCCAGACTTATCAATTTGTCCGGTAAACTACTTGGAGCTCATGTAGCCCATGCCGGATTAATCGTATTCTGGGCCGGAGCAATGAACCTATTTGAAGTGGCCCATTTCGTACCAGAAAAACCCATGTATGAACAAGGGTTGATTTTACTTCCGCACTTAGCTACTCTAGGTTGGGGAGTAGGGCCGGGGGGAGAAGTTCTAGATACTTTTCCTTACTTTGTATCCGGAGTACTTCACCTAATTTCCTCCGCAGTCTTAGGCTTCGGTGGCATTTATCACGCGCTTCTGGGACCAGAGACTCTTGAAGAATCTTTTCCATTCTTTGGTTATGTATGGAAAGATAGAAATAAAATGACTACAATTTTGGGTATTCACTTAATTTTGTTAGGCCTAGGTGCTTTTCTTCTAGTACTCAAGGCTCTTTATTTTGGCGGCGTATATGATACCTGGGCCCCGGGGGGGGGGGATGTAAGAAAAATTACCAATTTGACCCTTAGCCCCGGTGTTATATTTGGTTATTTACTAAAATCCCCTTTTGGGGGAGAAGGGTGGATTGTTAGTGTGGATGATTTAGAAGATATAATTGGGGGACATGTATGGTTAGGTTCCATTTGTGTACTTGGCGGAATTTGGCATATCTTAACCAAACCCTTTGCATGGGCTCGCCGTGCATTTGTATGGTCTGGCGAAGCTTACTTGTCTTATAGTTTAGGTGCTTTATCTGTTTTTGGTTTTATCGCTTGTTGTTTTGTCTGGTTCAATAATACGGCTTATCCAAGTGAGTTTTACGGACCCACTGGGCCAGAAGCTTCTCAAGCTCAAGCATTTACTTTTCTAGTTAGAGACCAGCGTCTTGGAGCTAATGTAGGGTCTGCCCAAGGACCGACCGGTTTAGGTAAATATCTAATGCGTTCCCCAACGGGAGAAGTTATTTTTGGAGGGGAAACTATGCGTTTTTGGGACCTTCGTGCTCCGTGGTTAGAACCTCTAAGGGGCCCCAACGGTTTGGACTTGAGTAGGTTGAAAAAAGACATCCAACCTTGGCAAGAACGACGTTCGGCAGAATATATGACCCATGCTCCTTTAGGCTCTTTAAATTCCGTGGGTGGCGTAGCTACCGAGATCAATGCAGTTAATTATGTCTCTCCTAGAAGTTGGTTAGCGACCTCCCATTTTGTTCTAGGATTCTTCTTTTTTGTGGGCCATTTGTGGCATGCAGGAAGAGCCCGAGCTGCTGCAGCAGGCTTTGAAAAGGGAATTGATCGTGATTTGGAACCTGTTCTTTACATGACCCCTCTTAACTAAGATTTTTTTATTTATACCGGTTCTACT------TTTTTTTCTGTTCTGGCTCGGTTATTCCATCTAGCCGAGCCATTCATGCTTTTTTATGAAAGAATGATATAAGGGGACAGAACAAAGAAAAAGATAGAAGGAAACAAATGGATTCAATAAACAAA >Lolium_multiflorum GGAACTTTCGTTTTAGCTGGTCGTGACCAAGAAACCACCGGCTTTGCTTGGTGGGCTGGGAATGCCAGACTTATCAATTTGTCCGGTAAGCTACTTGGAGCTCACGTAGCTCATGCCGGATTAATCGTATTCTGGGCCGGAGCAATGAACCTATTTGAAGTGGCTCATTTCGTACCAGAAAAGCCCATGTATGAACAAGGCTTAATTTTACTTCCACACTTAGCTACTCTAGGTTGGGGAGTAGGACCAGGGGGAGAAGTTCTAGATACTTTTCCGTACTTTGTATCTGGAGTACTTCACCTAATTTCCTCCGCAGTCTTAGGCTTCGGTGGCATTTATCACGCGCTTCTGGGCCCTGAGACTCTTGAGGAATCTTTTCCATTTTTTGGTTATGTATGGAAAGATAGAAATAAAATGACTACAATTTTGGGTATTCACTTAATTTTGTTAGGTCTAGGTTCTTTTCTTTTAGTACTTAAGGCTCTTTATTTTGGCGGTGTATATGATACCTGGGCCCCTGGGGGGGGAGATGTAAGAAAGATTACCAATTTGACTCTTAGCCCCAGTGTTATATTTGGTTATTTACTAAAATCTCCTTTTGGGGGAGAAGGGTGGATTGTTAGTGTGGATGATTTAGAAGATATAATTGGTGGACATGTATGGTTGGGTTTCATTTGTGTATTTGGCGGAATTTGGCATATCTTAACCAAACCCTTTGCATGGGCTCGCCGTGCATTTGTATGGTCTGGAGAAGCTTACTTGTCTTATAGTTTAGCTGCTTTATCTGTCTTTGGTTTTATCGCTTGTTGTTTTGTATGGTTCAATAATACGGCTTATCCGAGTGAGTTTTATGGACCCACCGGGCCAGAAGCTTCTCAAGCTCAGGCATTTACTTTTCTAGTTAGAGATCAGCGTCTTGGAGCTAATGTGGGATCTGCTCAAGGACCCACAGGTTTAGGTAAATATCTAATGCGTTCCCCAACTGGGGAGGTTATCTTTGGAGGGGAAACTATGCGTTTTTGGGACCTTCGGGCTCCATGGTTAGAACCTCTAAGGGGCCCCAATGGTTTGGACTTGAATAGGTTGAAAAAAGATATACAACCTTGGCAAGAACGACGTTCAGCAGAATATATGACCCACGCCCCTTTAGGCTCTTTAAATTCTGTGGGTGGCGTAGCTACCGAGATCAATGCAGTTAATTATGTCTCTCCTAGAAGTTGGTTATCAACTTCTCATTTTGTTCTAGGATTCTTCTTTTTTGTGGGCCATTTGTGGCATGCAGGAAGAGCCCGAGCTGCTGCAGCAGGTTTTGAAAAGGGAATCGATCGTGATTTGGAACCTGTTCTTTACATGAATCCTCTTAACTAAGATTTTCTTATTTATACCTGTTCTAATGTTTTATTTTTTTCTGTTCTGGCTCGGTTATTCCATCTAGCCGAGCCATTCATTCCTTTTTATGAAAGAAAGATA---AGGGACAGAATAAAGATAAAAAATTCAAGAAACAAGCATATTCAATAAGCAAA >Lolium_perenne GGAACTTTCGTTTTAGCTGGTCGTGACCAAGAAACCACCGGCTTTGCTTGGTGGGCTGGGAATGCCAGACTTATCAATTTGTCCGGTAAGCTACTTGGAGCTCACGTAGCTCATGCCGGATTAATCGTATTCTGGGCCGGAGCAATGAACCTATTTGAAGTGGCTCATTTCGTACCAGAAAAGCCCATGTATGAACAAGGCTTAATTTTACTTCCACACTTAGCTACTCTAGGTTGGGGAGTAGGACCAGGGGGAGAAGTTCTAGATACTTTTCCGTACTTTGTATCTGGAGTACTTCACCTAATTTCCTCCGCAGTCTTAGGCTTCGGTGGCATTTATCACGCGCTTCTGGGCCCTGAGACTCTTGAGGAATCTTTTCCATTTTTTGGTTATGTATGGAAAGATAGAAATAAAATGACTACAATTTTGGGTATTCACTTAATTTTGTTAGGTCTAGGTTCTTTTCTTTTAGTACTTAAGGCTCTTTATTTTGGCGGTGTATATGATACCTGGGCCCCTGGGGGGGGAGATGTAAGAAAGATTACCAATTTGACTCTTAGCCCCAGTGTTATATTTGGTTATTTACTAAAATCTCCTTTTGGGGGAGAAGGGTGGATTGTTAGTGTGGATGATTTAGAAGATATAATTGGTGGACATGTATGGTTGGGTTTCATTTGTGTATTTGGCGGAATTTGGCATATCTTAACCAAACCCTTTGCATGGGCTCGCCGTGCATTTGTATGGTCTGGAGAAGCTTACTTGTCTTATAGTTTAGCTGCTTTATCTGTCTTTGGTTTTATCGCTTGTTGTTTTGTATGGTTCAATAATACGGCTTATCCGAGTGAGTTTTATGGACCCACCGGGCCAGAAGCTTCTCAAGCTCAGGCATTTACTTTTCTAGTTAGAGATCAGCGTCTTGGAGCTAATGTGGGATCTGCTCAAGGACCCACAGGTTTAGGTAAATATCTAATGCGTTCCCCAACTGGGGAGGTTATCTTTGGAGGGGAAACTATGCGTTTTTGGGACCTTCGCGCTCCATGGTTAGAACCTCTAAGGGGCCCCAATGGTTTGGACTTGAATAGGTTGAAAAAAGATATACAACCTTGGCAAGAACGACGTTCAGCAGAATATATGACCCACGCCCCTTTAGGCTCTTTAAATTCTGTGGGTGGCGTAGCTACCGAGATCAATGCAGTTAATTATGTCTCTCCTAGAAGTTGGTTATCAACTTCTCATTTTGTTCTAGGATTCTTCTTTTTTGTGGGCCATTTGTGGCATGCAGGAAGAGCCCGAGCTGCTGCAGCAGGTTTTGAAAAGGGAATCGATCGTGATTTGGAACCTGTTCTTTACATGAATCCTCTTAACTAAGATTTTCTTATTTATACCTGTTCTAATGTTTTATTTTTTTCTGTTCTGGCTCGGTTATTCCATCTAGCCGAGCCATTCATTCCTTTTTATGAAAGAAAGATA---AGGGACAGAATAAAGATAAAAAATTCAAGAAACAAGCATATTCAATAAGCAAA >trnS-UGA:psbZ >outgroup CAGCCCAATCCCTATTTTATTCCTACAAATAGAACATAGCTATATGAAATGATCTACTAACTCCTAGAAACATCTCAGATACAAGTCTACTTTCGATATCTCTCTGTATACTGTATACCCGGATACAGAATCCGGTATATCCGTTTGTGAAATAAACGCTAAATCCCCTCCCCTCAACTCCATATCCAAATAA---AAGTGGT-------AAGGAAAAGTTT----TAAAAAGAAGAATCAATGGATTCATGATTAAACCCCTCCTACTTCATTGTATTTTCGTACAATTTTGATTAAGTGAGGGATCAAATAGAAATATATAGAAATATGTAGTCAACTTTATTTGAAGGTAGTTTGGAGAATTATAAAT >Lolium_multiflorum CAGCCTAATCCCTATTTTACTCGTACAAGTAGAACATAGCCATATAAAAAGATCTACTAACCCCTAGAAAGATCTCAGATGCAAGTCCCTTTTCGACATATCTCTGTATACTGTATACACAGATACATGATCCGCTATACCAGCTTGTGAAATAAAGACTAAATCCCCTCTCCTCACCCCCATATGCAAATAAAAAAAGCGGTTAAGTAAAAAAAAAAGTTTTAATTAAAGAGAAGAATCAATGGATTCATGATTAAACCCCTCCTACTTC-TTGTATTTTTTTACAATTTTGGTTAAGTGAGGGATCAAATA----------------TGTAGTCAACTTTATTTGATGGTAGTTTGGAGGATTAGAAAT >Lolium_perenne CAGCCTAATCCCTATTTTACTCGTACAAGTAGAACATAGCCATATAAAAAGATCTACTAACCCCTAGAAAGATCTCAGATGCAAGTCCCTTTTCGACATATCTCTGTATACTGTATACACAGATACATGATCCGCTATACCAGCTTGTGAAATAAAGACTAAATCCCCTCTCCTCACCCCCATATGCAAATAAAAAAAGCGGTTAAGTAAAAAAAAAAGTTTTAATTAAAGAGAAGAATCAATGGATTCATGATTAAACCCCTCCTACTTC-TTGTATTTTTTTACAATTTTGGTTAAGTGAGGGATCAAATA----------------TGTAGTCAACTTTATTTGATGGTAGTTTGGAGGATTAGAAAT >trnT-GGU:trnE-UUC >outgroup ----------------------------------------------------------------ACTTT-TCTACTAAA-TTCATTCATTTTTTTCTTTTTTTTGTGAAAATGTCTCCATTTTTTCTTTAATTTTATGACTTAGTTTAGTGCGAGATGCCCACATTTTTGATCTGAACACTAAACGAAGCACAGAGTTTTTAAAAAAGAAATGAAATTGGACTCTTTTTCCTGTTAGAGCAATCAAATCAATACCCGTACTGAACTAA------------TCTAGACTCCTTTTTATT----AATCTATTCTTATTCTATACCCTTTAAACTTAAACGAATTTCCTTAAAAATAAAAAGTGGGGGATGATCCGTGAATTAACCTAACCATCAACTAAAAAGAATCCTATGAAAGCATAACAGAAAAGTAGTAAAGATTCTTTTCTTTG-ATCTAGTTATACTCTTCGAGTATATTGACAATTCAAAAAAACTGCTCATACTATCATTATAGTATAATGACA-----------AGTGGTTGTATATAGTGCTATCGTCTAGTGCT >Lolium_multiflorum TTAAAATTAGTGGTAGAGTAATGCCGTGCTAAGACGTAAGTCCTCGGTTCGAATCTGATAGAATACTTTATCTACTAAAATTCATTCACTTTTTTCTTTGTTTT-TTAAACTTTCTCCATTTTTTATAGAATTTTATGACTTAGT-----GCGGGATGCATTCATTTTGGGTCTGAACACTAAATAAAGCAAAAA-------AAAAA-----GAAATTGTACTCTTTTTCATCTTAGATCAATCAAATAACTACCTGTACTGAACTAATACTAATATAGATATAGAATCCCTCCTATTTCATAATCCATTCTTATTCTATAACCCTTTAA-----ATAAATTTCCCTAAAAA------GTAGGGGATGGTCCATGAATTAATCTAACCATCAACTAAAAA----------AAAACATAACGGAAAAGTAGGAAAAACTCTTTGCTTTGGATCTAGTTATACTTTGCGAGTATATTGACAATTCCAAAAAACTGCTCATACTATGATTATAGTATAATCACAGTATAATCACGAGCGGTTGTATATGGCCTTATCGTCTAGTGAT >Lolium_perenne TTAAAATTAGTGGTAGAGTAATGCCGTGCTAAGACGTAAGTCCTCGGTTCGAATCTGATAGAATACTTTATCTACTAAAATTCATTCACTTTTTTCTTTGTTTT-TGAAACTTTCTCCATTTTTTATAGAATTTTATGACTTAGT-----GCGGGATGCATTCATTTTGGGTCTGAACACTAAATAAAGCAAAAA-------AAAAAAAAAAGAAATTGTACTCTTTTTCATCTTAGATCAATCAAATAACTACCTGTACTGAACTAATACTAATATAGATATAGAATCCCTCCTATTTCATAATCCATTCTTATTCTATAACCCTTTAATTTAAATAAATTTCCCTAAAAA------GTAGGGGATGGTCCATGAATTAATCTAACCATCAACTAAAAA----------AAAACATAACGGAAAAGTAGGAAAAACTCTTTGCTTTGGATCTAGTTATACTTTGCGAGTATATTGACAATTCCAAAAAACTGCTCATACTATGATTATAGTATAATCACAGTATAATCACGAGCGGTTGTATATGGCCTTATCGTCTAGTGAT >trnY-GUA:trnD-GUC >outgroup AAATCTAGGGCTTCATGAATAAGAACTAAATCC-----ATTATTTTTTATTCCATAAAAAATAATGTC-------TGATCCATAGAAATAAAGGATAAACAGAAATGGTAAAATTTT--TTTCTAATCCATATCTCTCTGATTCGTTTTCTTATAAATAAAAGACAAAGAAAAGAGTTATGGAAAGAGGGATTCTCATT--TTTTTAGGGATAAAAAATCGCGGCATACTT-ATTATGCCACTCGCACTATACCCACAT-ATCCTGTGTGGGTATGTAGTATATGATTCGTCTATTTCTTAGAGCACGACAGATGAATGGAATCTTCTTATGGTTCTATTTAAGAATAGGCATGCCATATACCCCGCA >Lolium_multiflorum AAATTTAGGACTTCGTGAATATGAACTAAATCCTTTTGATTTTCTTCCATTCCATAAAATAAAATGTCAGATCTCTGATCTATAGAAATAAAAGATAAAGAAAAAAGGGAGAAATTGGATTTCTAACCCATATCTCTCTCATTC-CTTTCTTACAAACAAAATA-----GTTTTTCTTATTGAAGGGTGAATTATTATCCATTTTTAGTGAGAAAAAATCACGACATACTAGATTATGTCACTCTCACTATAACCACCTGATAATATGTGGGTGTGTAGTATATGATTCGTCTATTTCTTAGAGTAGGACAGACGAATCGAATCTTCTTATGGTTCTATTTAAGAATAGGTATGCCATACACCCCGCG >Lolium_perenne AAATTTAGGACTTCGTGAATATGAACTAAATCCTTTTGATTTTCTTCCATTCCATAAAATAAAATGTCAGATCTCTGATCTATAGAAATAAAAGATAAAGAAAAAAGGGAGAAATTGGATTTCTAACCCATATCTCTCTCATTC-CTTTCTTACAAACAAAATA-----GTTTTTCTTATTGAAGGGTGAATTATTATCCATTTTTAGTGAGAAAAAATCACGACATACTAGATTATGTCACTCTCACTATAACCACCTGATAATATGTGGGTGTGTAGTATATGATTCGTCTATTTCTTAGAGTAGGACAGACGAATCGAATCTTCTTATGGTTCTATTTAAGAATAGGTATGCCATACACCCCGCG >trnD-GUC:psbM >outgroup ACTAGGGTTCAATGAATGGACAAATTCATCTTTCCTTTTTTCATGGAAATTTTTGATGAAAAAGGGGGGGGGGACAGGAGGCAAGATCAAATATCCATGGGGCACCCTTACTTCACTTTTTTTATTTCGTATTTCTCAGTAAAAAGAGAGCTGTATAGGAAGTTTTTTTCACTACTTCCGGTTGATAAGGAAAGGCATACATATCATACGTGGATTAGTATAATTTAGGATATTACTCTATTTTTATGATGATACCGTCCTCATCTTAACTTCCTATTCGACTCTTATGGAATCGAGTACCGGTATTTTACCGGAATCCATACATAAAACGTATTCGTTTATTGTTGTTTATTGTTAGAGAATGCATTTCATCTAATTAGTTCTTTTTGGGGGGTTAAAACACATCCCTTCCATTTTCTAGTTCCAACTTTGTTTGTGTATGTTCAATGAATAATTGGAAAGAATCTACCTCATTCTCACTTCATTTGCCGAATCCTTTTTTTATGGATCCGCTCTCATCTTTAGACCCCCAAAAACAGATATTGATAGTAACCTAATAAAAAAACCAAGCAAACGCTCTTTTTCA-TAAATTGAAATATG---AGATCCTTTTTATTTAAGATCCTCTTTTCTCCATCTCATTTCGACTTCTACTGCTTATTTGGAGGTCTATGTGACCCATAGAAAGGTGGTCATATAATACATACATAATTGTATGTATAACTATAAGTATAAGAAAAAGGAAGGGAAATTTGATAAGAT-AAGAAAAATTTTTGGTTATACATATAGAAAAGCAAAAGTAGAAAAGAATGAAAAATGGAATAGATGGGGTTTCGAATCCAATCAAAAAC-CCATTTTTGTCTTAGTATGGATAAGGGATCTTCCTATGTTATATTATTCCACTATCAACCATGAATTGATTTGATAGATCCAATATTCATAATATTGAATTGATTCCGTATTATCAGAATGCAAATCCTCCCCTTGAATTTACGGAATACCCCTTTTTCCTCTCCATGGGATTACATCCCGAGTTATTGTGAAA---AAAAAAAAAGAGGTT >Lolium_multiflorum -----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ACTAGGGTTCAATGAATGGAGAAATTCATATTTCCTTTTTATTTAAGA-CCTCTTTTGCCCATCTCAGTTC------TACTGCTTATTTGGATGTCTATGTGACCCATAGAAAGTTGGTCATATAATACATACATACAATTATGTATG--TATAACTATAAGAAAAAGGAGGGGGAATTAGATAAGATTAAGAAAGATCGTGGATTAGAGGTATAGAAAA-TAAAAGTGGAAAAGGATTAAAAA---AATAG--GGAATTCCTAACCCAATCAAAAAAACCATTTTGGTCTTAGTATGGATAGAGGATCTTCCTAT----TACTATTCCACTCTCAACTATGAATTGATTTGATAGATCCGATATTCATAATATTGAATTGATTCAGTATTATCAGAATGCAAGCCCTACCCTTGAATTTACAGGATACCCCTTTTTCCTCTCCATGGGATTACATCCCGAGTTATTGTGAAAATAAAAAATAAAGAGGTT >Lolium_perenne -----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ACTAGGGTTCAATGAATGGAGAAATTCATATTTCCTTTTTATTTAAGA-CCTCTTTTGCCCATCTCAGTTC------TACTGCTTATTTGGATGTCTATGTGACCCATAGAAAGTTGGTCATATAATACATACATACAATTATGTATG--TATAACTATAAGAAAAAGGAGGGGGAATTAGATAAGATTAAGAAAGATCGTGGATTAGAGGTATAGAAAA-TAAAAGTGGAAAAAGATTAAAAA---AATAG--GGAATTCCTAACCCAATCAAAAAAACCATTTTGGTCTTAGTATGGATAGAGGATCTTCCTAT----TACTATTCCACTCTCAACTATGAATTGATTTGATAGATCCGATATTCATAATATTGAATTGATTCAGTATTATCAGAATGCAAACCCTACCCTTGAATTTACAGGATACCCCTTTTTCCTCTCCATGGGATTACATCCCGAGTTATTGTGAAAATAAAAAATAAAGAGGTT >psbM:petN >outgroup TGGAATTCCAATTAATCATTGAAGAAATG-AAAAAGGGATTAAAGAAAATAAAAATCCAAATCTTAAATGAAAGGATCCGGTTGGAATCATAAAGTGTAGTAGAAAGAACTACATATAGTTCTTTCTACTACATCTTTCTATTATATTATCTTGA-ATCTACATAAAATCGATTAGTAGATTGAAATAGTGGTCTAATTCAACTTCTTTTTTCACCGCATCCACGTAATTTCAATCAAGTCAGAATCAAAAAAATCGAAGACAATTCTTCATTGAAAGAATCCATGGAGGGGGAGAAAAATAATACTAGAATAGACTATAGTAAAAGAAAAAAGTAAAAACCTACGAATCTTTCATGCTTAAAAATAGCGCGAGATCCTTCATAAAAAAAAAAAGAACATAAAAAATTTTCTATTCTAAGAATAAGAAACTATTCTAAGAATAAGAAAATAGTATAAACGGAAAATGTGCGATATGTTGTGAATAGCTTCGTGTAAGAAAGTCTAATTTTCTTATTCTTAGAACTTTCTTTTTACTCGTCACTTCTAGTAGAATAGAAATTCTGAATTACAATAATCGCCCTTTCTATTCTATTATACTGGAATAGAACATAGTAGAATAGAAGGACTCTTGCTTACTTTCTTAAAAGAGTTTCTTACAAGAGTGAAACAAAACTAAAGAAAAAGAGAAAAAATAAAGTTTGGCAAAATTTTTAATACAAAATGATCAATTAAAGAAAAGAGTTGATACTACAATTCGACTACTCAATCAACTGGTAGTATCC >Lolium_multiflorum TGGAATTCTAATTAATCATTGAAGACATCCAAAAAGGGATTAAATAAAA--AAAATCCAAGTCTTAAATGAAAGGATCTGGTTGGAATCTTAAAGTGTGGTAGAAAGAACTACATATAGTTTTTTCTACGACACTTTAGAGTTTTTCTATTATATTATCGGAATGAAACTAAAGAAAAAGATTAAAGAATAAT---GTTTGACAAAATGATTAATGCAAAATGATCAATTAAAGAAAAGAGTTTATACAACAATTCGATTACT-CAATCAATTAGTAGTATCC-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- >Lolium_perenne TGGAATTCTAATTAATCATTGAAGACATCCAAAAAGGGATTAAATAAAA--AAAATCCAAGTCTTAAATGAAAGGATCTGGTTGGAATCTTAAAGTGTGGTAGAAAAAACTACATATAGTTTTTTCTACCACACTTTAGAGTTTTTCTATTATATTATCGGAATGAAACTAAAGAAAAAGATTAAAGAATAAT---GTTTGACAAAATGATTAATGCAAAATGATCAATTAAAGAAAAGAGTTTATACAACAATTCGATTACT-CAATCAATTAGTAGTATCC-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- >petN:trnC-GCA >outgroup TAAATTATGTCTCCTATTTCTATGAAGGAATTCTTCTACTATTAATCAATAATCATAGTGGAATCAAGGGTACAGAGTCAAAAGTCCATTCTATTCCGCCCTAAGACTATGGATGAATCCGTTAAAGGAATTGACTCCTAACAAATTCTTATATGATTTCTGGTAGAATTGGAGAGCATTAAGTATAAATATGATACATAGCCCTTTCCCT-------AAAAAAAGGGGAGATGTCCTGAATAGAAGAGAAGACGCGGGAATAGAGAGATTTCT----TCGTTCGTTTGTTACCTTTTTTATAA---TATAAGCAAAGGACGTAAAAATATACCATAAAATTA-GGATAGATAAATATTTATTGGATAC-----CTACCTTACCCACGTTTATTTTTGACCTAAACCCTACTGCCCCGCTTTCTATCTTTCTATGAAAGAGTAAGGAGGCCTTATCCCCAAC-----CCCGAAATGGATTTTTGATCAGCCTATTCAATCTAATT----CTCGGA-----AGTCCCTTCTTCAATCT-------TAGATTGAAA--------AAAGACTGCCCCTTAAGGACCTTTGGC-TTTGGATACGAAGAT--TTCTGACATCTTA-------------------GTCTCGTAG--------TTTTAAATTCTCGAATCGAATCAATTTAAAT----TAATAAAAGAATAAGGAAACGCTACCTCATCCCTATTGGTAGCCCTTTGGGCCACTGCCGACAAAACAAACCATAGTTCTATCCTCAAACTATGGTATGGATTCTAAAAATCCAGTATCGCCAGGCCTAGTTACTCTCGTGCCCCAACTTATGGGGGGTACGAATTTGTCGAGTTTGATCAGTACTA-AAATCCTAAAATCCTAAGTAATCCTAAGTATTTTATTGATC >Lolium_multiflorum TAAATTATGTCTCCTATTTCTATGAAGGAATTATTCTACTATTGATCAATAATCATAGTGGAATCAAGGGTACAGAGTCAAAAAGGGACTCTC-----CCCTAAGGCTATGGATCAATCAGTTCAAGGAATTTACCCCTAACAAATTCTTATAGGAATTCCGATAGAATTAGAGAGCATTAAGTATAAATACGATACATAGCCCTTTTTTTTTCATTAAAAAATAGTACAGGAATGATGTCCTGAATAGAAGAAGCGGAAATAGGAATATTTTTGATTCCTTTTGTTTGTTACTCTTTTTTTATTTTTATAAGCAAAGGACGCCCAAATATACCATAAAATTATGGATAGATAAATATTTATTGGATACTATACCTACCTTACCCATGTTTATTTTTGACCTAAAGCCTACAGCCCTGCTTTCTATCATTCTATGAAAGAATGAAGAGACTTTATCCACAACACAAATCATAAATTAATTTATGATCGGCCTATTTAATCTGATTATCGCTCGAATAAGTAGTCCTTACTTTAGTGTATGTAGGTAAAATAAGATGTATGATAATGTATGATAATTAGGAAGTCTTGGTATTCCTTCACGGAGTCCCTTCTTCAATCTTAAATTGAAAAAAAAAGAAATGCCCCTAAGGGGCATTTCTTTGGATACCAAGATTTTTGGGATCTTAGCCTCGTCGTTTTCAATTCTCAAATCGAACCAATATCCCTATTGGTAACCATTTTGGCCACTACCCCCAAAACAAACCCTAGTTTGAGGATAGAACTATGGTATGGATTCTCAAAACCCAGTATCAGCAGGCCTAGTTACTCTCTTCCCCGAACTTATGCAGAGTACGAATTTATCGAGTTCGATCAGTACTATAAAACCTAAGTATTTTATTGATG------------------ >Lolium_perenne TAAATTATGTCTCCTATTTCTATGAAGGAATTATTCTACTATTGATCAATAATCATAGTGGAATCAAGGGTACAGAGTCAAAAAGGGACTCTC-----CCCTAAGGCTATGGATCAATCAGTTCAAGGAATTTACCCCTAACAAATTCTTATAGGAATTCCGATAGAATTAGAGAGCATTAAGTATAAATACGATACATAGCCCTTTTTTTTTCATTAAAAAATAGTACAGGAATGATGTCCTGAATAGAAGAAGCGGAAATAGGAATATTTTTGATTCCTTTTGTTTGTTACTCTTTTTTTATTTTTATAAGCAAAGGACGCCCAAATATACCATAAAATTATGGATAGATAAATATTTATTGGATACTATACCTACCTTACCCATGTTTATTTTTGACCTAAAGCCTACAGCCCTGCTTTCTATCATTCTATGAAAGAATGAAGAGACTTTATCCACAACACAAATCATAAATTAATTTATGATCGGCCTATTTAATCTGATTATCCCTCGAATAAGTAGTCCTTACTTTAGTGTATGTAGGTAAAATAAGATGTATGATAATGTATGATAATTAGGAAGTCTTGGTATTCCTTCACGGAGTCCCTTCTTCAATCTTAAATTGAAAAAAAAAGAAATGCCCCTTAGGGGCATTTCTTTGGATACCAAGATTTTTGGGATCTTAGCCTCGTCGTTTTCAATTCTCAAATCGAACCAATATCCCTATTGGTAACCATTTTGGCCACTACCCCCAAAACAAACCCTAGTTTGAGGATAGAACTATGGTATGGATTCTCAAAACCCAGTATCAGCAGGCCTAGTTACTCTCTTCCCCGAACTTATGCAGAGTACGAATTTATCGAGTTCGATCAGTACTATAAAACCTAAGTATTTTATTAAACTTAAGTATTTTATTGATG >trnC-GCA:rpoB >outgroup AAAAATCCGATCTAAAATCGCGAAAAGAACAAGTATTCATCTACATTTTTTTACTAAAACCCTTTTTTTCTTTTATTTTTTTCTTTTATCTTGAATCTAATTCTACTTACTTTTTT-CTAATCTTTTTCAAAAAAAAAAATGGATTTCTGCTTTTTTTGGATCCAGTTTCGCTTATTCTCCTTAATGGATTCTATCTTAAAACACATATTGCTAACACTAGAAAACTTCCCTTTTCTTTCTATTCTATTGAGATGACAAAGGAGAAAAAGTGGATTTCCAGTCGCAGGCTGTAAAATTCAGAACAAATTAGAACCATTAACTATAATTTAGATTTTTTTTGAATTGCAGTAGTAAACGATC--------------GGTATTCCCCCCCCCATTATTT----TTAATGGCATAATAAAAT-AGAATAAATTTTTTCCTAATCTGTATATAGGGAAACTCGAGGTTCGAACAGCATTATTATCTATGGATCCCCCTTATGTACATATCCCTATGGGGAATCGTGCTTTAATTTTTCATTGCATTAAATATCTTGAATAAAAAAAGAGGGAATTTTCTCTGATATAGATTATGGCCTTCTTTTCTTGGCCCACCTAAGTGCA----ATTAAGATAAAAGAAA-----GGATATGTAGATAGGTGGATAACTAGATTGGCAAGTACTTAAAAAATAAAGTACTTACTTTATTCTTTATTTTAAGATCCTACAACGAAATCCTTTATTTTCCAGCAATTCTACTACTACGAATACGAAACAAAAAAGAACCTTCAAATTCATTTT-GAAAATGAAACTAAGCATGCTATTCTAAATCGAACTAAAG----------TCAAACTTTCTAGT--GCTTAT-AAATT--ATTATGGCTTTATCCCTTTCATAGAAAGGAGATAAAACGAGAAATCTTTGCTATCCAATCTTTTTAGAATATCAT-AAAGTTTAAGTGGCAGAATTTTTTTATAGGACTGTTTTATCAATTCATTTTTATTCCATTTCTACCCCTGCTAAATTCGAACTTTCGTCGAAATCGTCTCTATTCATATGTATGAAATACATATATGAAATACGTATGTGGAGTTCCCTAGAATTTCATGTGATTCAGTAAACAGAATATAGATTCCATGATTGCTAGATTGATCCGTAGGGATTGATGAAGACTGAGCTGATAATGGAATTTTTCTTCGATAAATAGGAAACTTAAGATTAAA >Lolium_multiflorum AAAAATCCGAGGGAAAATCGAGAAAAGAGGAAGTATTCATCCACGTTTTCTTACGAAAAACC--------------------CTTTTATTTTGAATATAATTCTACTTACTTTTTT-CCAATCT-----AAAAAAAAAAAAAGATTCCTGCTTTTTTTGC-TCCAGTTTCTATTACTCTCTTCAATAGATTCTATCTTAAAACATACATTGTTAACACAATAAAACTTTCTGTTTCTTTCTATT-----GAGATTAAAAAGGAGAAAAAGTGGATTTATAGTCACAGGCTGAAAAATTCAGAACAAATTGGAACCATTAACTAGAATTCT-ATCTTTTTTTAATTGCAGTAGTGAACGACTCTTAAACTTAAATAGGTATTATCTCCCCCGTCCTT-----TTAATGGCATAATAAAATTATTATGGCTTTATGCCTAATCCGTGTATAGATAAACTCTAGGCCTGAACAGCATTATTATCCAAAGATCCCCCTTATGTACATATCTCTATGGGGAATCGTGCTTTCATTTTTCAAAGCATTAAATATCTTGAATAAAAAAAAAGGAAATTTGCTCTGATATAGAGTATAACCTGACTATCTTGGTCTGTCCAAGTGAAAGAAATTACGATAAAAGAAAAGCATGGCTATGTGGAGAGGTAGATAACTAGATTGGCATGTACTTAAAAAA---AGGACTTACTTTATTTTATA-------ATTCTACAAGGAAATCCTAAATTTTATAGCAATTCTACTACTCCAAA------ATAAAAAAGAACCCGCAAATTCTTTTTTGAAATTTAAAGTAAGCGCGCTATTCTAAATCGAAGTAAAGCCAAACTTTCTCAAACTTTCTAGTCTATTTATTATATTAAATTATGGCTTTATTACATTAATAGAAAGGAAATAAAATGAGAAATCTTTGCCATCCAATCTGATTAGAATATCATGAAAGTCTAATTGGCATAATTTTTTTCTAGGAATGTTTTATCAATTCATTTTCATTCCATTTGTACCCCTGGCAAACTCGAACTTTCGTAAAAATGGTCTCTATTCATATGTATGAAATACATATATGAAATACGTATGTGGAGTTCCCTAGAATTTCATGTGATTCAGTAAACAGAATATAGATTCCATGATTGCTAGATCGATCCGTAGGGATTGATGAAGAATGAGCTGATAATGGAATTTTTCTTTGATAAACAGGAAACTTAAGATTAAG >Lolium_perenne AAAAATCCGAGGGAAAATCGAGAAAAGAGGAAGTATTCATCCACGTTTTCTTACGAAAAACC--------------------CTTTTATTTTGAATATAATTCTACTTACTTTTTTTCCAATCT-----AAAAAAAAAAAAAGATTCCTGCTTTTTTTGC-TCCAGTTTCTATTACTCTCTTCAATAGATTCTATCTTAAAACATACATTGTTAACACAATAAAACTTTCTGTTTCTTTCTATT-----GAGATTAAAAAGGAGAAAAAGTGGATTTATAGTCACAGGCTTAAAAATTCAGAACAAATTGGAACCATTAACTAGAATTCT-ATCTTTTTTTAATTGCAGTAGTGAACGACTCTTAAACTTAAATAGGTATTATCTCCCCCGTCCTTTTCTTTTAATGGCATAATAAAATTATTATGGCTTTATGCCTAATCCGTGTATAGATAAACTCTAGGCCTGAACAGCATTATTATCCAAAGATCCCCCTTATGTACATATCTCTATGGGGAATCGTGCTTTCATTTTTCAAAGCATTAAATATCTTGAATAAAAAAAAAGGAAATTTGCTCTGATATAGAGTATAACCTGACTATCTTGGTCTGTCCAAGTGAAAGAAATTACGATAAAAGAAAAGCATGGCTATGTGGAGAGGTAGATAACTAGATTGGCATGTACTTAAAAAA---AGGACTTACTTTATTTTATA-------ATTCTACAAGGAAATCCTAAATTTTATAGCAATTCTACTACTCCAAA------ATAAAAAAGAACCCGCAAATTCTTTTTTGAAATTTAAAGTAAGCGCGCTATTCTAAATCGAAGTAAAGCCAAACTTTCTCAAACTTTCTAGTCTATTTATTATATTAAATTATGGCTTTATTACATTAATAGAAAGGAAATAAAATGAGAAATCTTTGCCATCCAATCTGATTAGAATATCATGAAAGTCTAATTGGCATAATTTTTTTCTAGGAATGTTTTATCAATTCATTTTCATTCCATTTGTACCCCTGGCAAACTCGAACTTTCGTAAAAATGGTCTCTATTCATATGTATGAAATACATATATGAAATACGTATGTGGAGTTCCCTAGAATTTCATGTGATTCAGTAAACAGAATATAGATTCCATGATTGCTAGATCGATCCGTAGGGATTGATGAAGAATGAGCTGATAATGGAATTTTTCTTTGATAAACAGGAAACTTAAGATTAAG >rpoC1:rpoC2 >outgroup CAAGGAAGTTAGATTCGGCGATGCCC-----CTTTCGGGGGGCATTCCGATTTTGCTAGTACCATCTTTTTTGCCGCGCAAATCTAGATTGAG------GAAAGGGAGTAAATTAAGTTTTCGAATCACTGACTCAGGCCCATTGTCGAATCCTACTCAGCAAA-------------------AAAAGGGGGGTACTTATGT >Lolium_multiflorum CCAGGAAGTTAGATTCGGCGATGCCCCTCCCCTTTCGGGGGGCATTCCGATTTCCCTAGTATCATCATTTTTGCCGCGCGAATTCAGATTGAGATTAAGGAAATGAAGTTAATTAAATTTTCAAATCACTGACTCAAGCCCATTGTCGAATCCTACTCAGCAATTGTCGAATCCTACTCAGCCGAAAAGGGGGTACTTATGT >Lolium_perenne CCAGGAAGTTAGATTCGGCGATGCCCCTCCCCTTTCGGGGGGCATTCCGATTTCCCTAGTATCATCATTTTTGCCGCGCGAATTCAGATTGAGATTAAGGAAATGAAGTTAATTAAATTTTCAAATCACTGACTCAAGCCCATTGTCGAATCCTACTCAGCAATTGTCGAATCCTACTCAGCCGAAAAGGGGGTACTTATGT >rpoC2:rps2 >outgroup AAGCCCCGTTTACCCCTATTTATATGATTTAAGTATACATAAAGCAATTTTTTTTTTTTTGCTTTAATTTAGACTATACTTTTGACCTTAGAATGCTAACAGGTCTGATTTTAGATTTTGTATTTTCATTTTTAATTAATTAAAAATGAAAATTAATTAAATTCAAATTTATAAGTAAAAGAAAAGAAGTCAGTTAATTCATTAAGGCTATGTTTATATCGTGTATCAATGGTCAATTATGAGTAGAAGGTTCCATCGGAACAATTATTATTTATTTCAAGCTATTTCGGCTCTTTCTTAATCTTCAAAAAGAAATTAATTCCGTAATGG--------TAAGATGAAAAAAGAA-----------AAAGGAAGTGTGGAAAAA >Lolium_multiflorum -------------------------------------------------------------------------------------------GATACATAAAGGAGATTTTTTTACTTTACTAG----ACTTTTGA--ACTTAGAACACTAAACGGGTCCAATTTTATATTTTAATTAAGT-AAAAGAATTTAGTTAATTCATTAAGGTTATGTTTATACAATGTATCAATGGCCAACTCTCAGTAGAAGGTTCCTTCGGAACAATTATTATTTATTTCAAGCTATTTTAGATCTTTCTTAATCTTCAAAAAGAAAAAAATTCCGTAATGGAATAATGGTAGGATGAAAAAAAAAAGAAAAAATCAAAAGGAAATGTGGAAAAA >Lolium_perenne -------------------------------------------------------------------------------------------GATACATAAAGGAGATTTTTTTACTTTACTAG----ACTTTTGA--ACTTAGAACACTAAACGGGTCCAATTTTATATTTTAATTAAGT-AAAAGAATTTAGTTAATTCATTAAGGTTATGTTTATACAATGTATCAATGGCCAACTCTCAGTAGAAGGTTCCTTCGGAACAATTATTATTTATTTCAAGCTATTTTAGATCTTTCTTAATCTTCAAAAAGAAAAAAATTCCGTAATGGAATAATGGTAGGATGAAAAAAAAAAGAAAAAATCAAAAGGAAATGTGGAAAAA >rps2:atpI >outgroup TAAGAAGAATAGTGAATTCTTGAGCAACTTCGTGGATTTATAGGATTAGTTACTATT-----TTGTTTTGCATAGATAAAAGAAGGGGAATATTGATATATATTAAAGGGTATTGATATATATTATGATCTGATGTGATTTCTTGGTATCTTAAATATAAGATTAATACTTCAAGTTGCTGAGTTGAGAAAGAGATGCTTGAATCAAAAGAATTCCTTTTTTGAAGTTCAATTTTTATCAGAGGATAAT---- >Lolium_multiflorum TAAGAAGAATAGTGAATTCTTGGGCAACAGCGTAGATTTATGGAATCACTTACTATTCTTTTTTGTTTTGCATAGAAAAAAGAAGGGGAATATTGATATATATTAGAGGGTATTGATATATATTATGATCTGATGTGCTTTCTTGGTATCCTAAATATAAGATTAATACTTCAAGTTGCTGAGTTGAGAAAGAGATGGTTGAATCAAAAGAATTCCTTTTTTGAAGTTCAATTTTTATCAGAGGACAGACAAT >Lolium_perenne TAAGAAGAATAGTGAATTCTTGGGCAACAGCGTAGATTTATGGAATCACTTACTATTCTTTTTTGTTTTGCATAGAAAAAAGAAGGGGAATATTGATATATATTAGAGGGTATTGATATATATTATGATCTGATGTGCTTTCTTGGTATCCTAAATATAAGATTAATACTTCAAGTTGCTGAGTTGAGAAAGAGATGGTTGAATCAAAAGAATTCCTTTTTTGAAGTTCAATTTTTATCAGAGGACAGACAAT >atpI:atpH >outgroup TTGACTAGTTTTCGCAATAGTATTTTTTTTTAGCTTAGTCCAATTCATGCATGATTCCGGATAATCCTCTTAGTTGGAAAACTAAATAGTTCGCAATGCGTATGAATATACAACCTAGAGTTGTAGGGGAGAGAATGGACTATATTACGGAAGAGTTAAAGTATATATGCATTCCGAGGGGCGGAGTCAGGTTAGATCTATA-------------TCCTTAATGCCTATAAG-ACAGTCATCTTTTGTGCGGCTTTC-----TAAGGAATGATTTTAGAA--------GTTGAAAAGAAAGAGAAATAGAATAA----TGAGAATCATATGGAT---------------------TTAGACAAACCT--------CTAATGATTAGAAACTAAAAACAAGATC----TCGAAGTAATTTGGACGATTTCGATTATCATTT--ATTTGTACTTATT-AGTTACTTCT--ACCCCA---ATAGAGCTTAGAAGTTG----------------------GAAATAATAATTTCTTGGTTGATTGTATCCTTAACCATTTCTTTTTTTTTTTTTGACACGAGGAACTCACC >Lolium_multiflorum TTGACTAGTTTTAA-AATAGTCTTTTTTTTTAGCTTAGCTCAATTCATGCACGGTTACGGA-------CTTGGTTGCAAAA--AAATAGTTAGAAATGCATATGAATATACAACCTAGAGTTGTAGGAGAGAGAATAGACTCTATTATGGAGTTGGCAAA----ATATGCAGTAAGGAGGGTGGAATCAGGCTAGATCTATACTATAATTATATATCCTTAATGTCTATAAGTGGAGTCATCTTTTGTGCGGGTTTCCGCTTTAAGGAATGATTTTAGAATCCGATTCATTCAATAGAAATAGAAAATGAAAAAAATATGAAAACAAAATAGAAGAAACAAATGTATATAGGGTATTATATATACCTAGGTTAGATTCATTATGTAATCCGATATATGGAATTCTCTTCTATATAGTTCAGACAATTCACATTATCATTTCAATTTGTACTTTTTGAGTTATTTCTCCACACTAGAGATAGAGCTTAGAAGTATACTTCTCCCTAATAGAGCTTATGAAGTAAGAATTTCTTGGTTGATTGTATCCTTAACCATTTCTTTTTTTT-----GACACGAGGAACTCACC >Lolium_perenne TTGACTAGTTTTAA-AATAGTCTTTTTTTTTAGCTTAGCTCAATTCATGCACGGTTACGGA-------CTTGGTTGCAAAA--AAATAGTTAGAAATGCATATGAATATACAACCTAGAGTTGTAGGAGAGAGAATAGACTCTATTATGGAGTTGGCAAA----ATATGCAGTAAGGAGGGTGGAATCAGGCTAGATCTATACTATAATTATATATCCTTAATGTCTATAAGTGGAGTCATCTTTTGTGCGGGTTTCCACTTTAAGGAATGATTTTAGAATCCGATTCATTCAATAGAAATAGAAAATGAAAAAAATATGAAAACAAAATAGAAGAAACAAATGTATATAGGGTATTATATATACCTAGGTTAGATTCATTATGTAATCCGATATATGGAATTCTCTTCTATATAGTTCAGACAATTCACATTATCATTTCAATTTGTACTTTTTGAGTTACTTCTCCACACTAGAGATAGAGCTTAGAAGTATACTTCTCCCTAATAGAGCTTATGAAGTAAGAATTTCTTGGTTGATTGTATCCTTAACCATTTCTTTTTTTT-----GACACGAGGAACTCACC >atpH:atpF >outgroup -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------CCTAAACAATAAAATGAGTCCTTTAGATTAGATACTTTTTTCTTTTTTTATTTTAGGAATTTGGGGAACATTTCAACAAAGGAGATCTTTC----ACAGGTCAAACGAGACCTAAGACTTAATCTAAAAGAAATTAGTAGATTGAATCTATTTGCATTAAAAAAACCGATCAAAAA-GGGCGAGCGAAGTAAGTGATCGAAAAACTTTCTTCTTTGTTCGTCCTATCT--------ATAAGAGGAGAGCAT >Lolium_multiflorum CCTAAAAAGTAAAATAAGCTCTTTCGATTAGATACTTTTTTCTTTTTTTAGTAAAATGGGTATTTGCTTCTGCAATTCCAATTATATCAATACTTTATTTTATTTACTCCTATTTATTACTTCTGGAATTCTCTATTTATTGGGACAGGCAATACCCCGCCCCAGGAGGGGCTCAGTTGAGTATGATTAATTTAGAAGATATGCTCGCCTTCTTCCTTCCCGTCCTTAGTTTAGGAAAGTAGAAAGTTTTTT-TCCTTTTATTTTAGGAATTTTTGGAACATTTCAACAAAGAAGGTCTTTCTTTCACAGGTCAAACAAGACCTAAGACTTAATCTAAAAGAAATTACTAGATTGAATCTATTTGCATTAAAAAAACCGATCAAAAAAGGGCGAGCGAAGTAAGTGATCGAAAAACTTTGTTCTTTGTTCGTCCTATCTATAAGACTATAAGAGGAGAGCAT >Lolium_perenne CCTAAAAAGTAAAATAAGCTCTTTCGATTAGATACTTTTTTCTTTTTTTAGTAAAATGGGTATTTGCTTCTGCAATTCCAATTATATCAATACTTTATTTTATTTACTCCTATTTATTACTTCTGGAATTCTCTATTTATTGGGACAGGCAATACCCCGCCCCAGGAGGGGCTCAGTTGAGTATGATTAATTTAGAAGATATGCTCGCCTTCTTCCTTCCCGTCCTTAGTTTAGGAAAGTAGAAAGTTTTTT-TCCTTTTATTTTAGGAATTTTTGGAACATTTCAACAAAGAAGGTCTTTCTTTCACAGGTCAAACAAGACCTAAGACTTAATCTAAAAGAAATTACTAGATTGAATCTATTTGCATTAAAAAAACCGATCAAAAAAGGGCGAGCGAAGTAAGTGATCGAAAAACTTTGTTCTTTGTTCGTCCTATCTATAAGACTATAAGAGGAGAGCAT >atpF:atpA >outgroup GAAATTTATTAGGCTTTGAACTTCTACTTTCGTTTAGAATTTAGGCATTATTTTTCCCCTTGCTTCCGAAAAAAAGATTCAAGAAACACTA >Lolium_multiflorum TAAATTAATTAGGCTTTGAGCTTCTACTTTCGTTTAGAATTTAGGCATTATTTTCCCCCTTGCTTCCGAAAAAA-GAGTAAAGAAATACTA >Lolium_perenne TAAATTAATTAGGCTTTGAGCTTCTACTTTCGTTTAGAATTTAGGCATTATTTTCCCCCTTGCTTCCGAAAAAA-GAGTAAAGAAATACTA >atpA:trnR-UCU >outgroup TATAGCATGTCTACTCTTAATAGCATGTCTACTCTTATTAGTATAACTCGTGTTAGTAGAAGAGGAATCCTTGAGAAAGATTTTTCATTTGAATCATGCAAAAAAGTTTTTTTCGTTTTTAGTATAGTTATTTAAAGAATAGATAGAAAAAAGAT >Lolium_multiflorum -----------------------------------------------------TTTTGCATGTCTACTCTT----GTTAGTAGA--ATTTGAATCGTGCAAAAAAGTTTTCTTAGTTTTTAGTATAGTTATTTAAAGAATAGATAGAAATAAGAT >Lolium_perenne -----------------------------------------------------TTTTGCACGTCTACTCTTTCTTGTTAGTAGA--ATTTGAATCGTGCAAAAAAGTTTTCTTAGTTTTTAGTATAGTTATTTAAAGAATAGATAGAAATAAGAT >rps14:psaB >outgroup ACGTGCCGTTCCTATTATTACCAAGTATATGGTTCGAATCCTAGATGGAAAAATAAATAGAAAA--AAATCTAAAAAGGCGGATCCTCCCTCTCCATCAAGAGGAATGAACTAGGTTCTGATA------CAGTACAAAAAAGCAAAAAAAAATAACTAAA >Lolium_multiflorum ATGTGCCGTTTCTATTATTGCCAAGTATATGGTTCTAATCCTAGATGGAAAAATAAATAGAAAAAGAAATCTAAGAAGGCGGATCCTCCCTATCTATCAAGAGTAATGAACTAGGTGCTGATACAGTAACAGTACAAAAAAACAAAAAAAA-TAACTAAA >Lolium_perenne ATGTGCCGTTTCTATTATTGCCAAGTATATGGTTCTAATCCTAGATGGAAAAATAAATAGAAAAAGAAATCTAAGAAGGCGGATCCTCCCTATCTATCAAGAGTAATGAACTAGGTGCTGATACAGTAACAGTACAAAAAAACAAAAAAAA-TAACTAAA >psaA:ycf3 >outgroup AAGTCCTCCTCTTTCCGGACAAGACATACAAAGAGACCCGCCAACTGTCTTTTTATTGAATCTTTGA--------------AAGATAGATATTATGATTAGTCCTTT-TCTTTATTATCTACCGTCCTTCTATTTTTTTTTTAGTTATTCACTGGAACAATTATATATTGAAGTCCATCCGAGGCAAGTGTTCGGATCTATTATGACATAAGGATTAGGTGCCTAACGGACATTTGTTATTCTGGAAAAT---TATTTCCCGACGTAACAAAAAAATCTTTTTTTACGTTTTAATTTAAGAAGCTAGTGTATTTTTTTTTCTGAGGGTATAAGCCCTTATCTACATCTACTTTCCTTGAGTGAGCATAATATCGATTTTTTTATTCGATTCAAAATTCCAAGATAACTCATTAGAATTATTAATAAAACCGTCCTGATATATTAGG-----TAGGATAATTTAGATTGCCACCTTTTATGTGCTTTATTACTTCTGTTCCAGAGCCTATCCCTATTGTTTATCCTTATGAAATATGATATAAAATC----GTAGAAGAAAGGGATATAATGAAATTCTTGATTTTATCTTCTTATCTTACCTAAATTATTTAATTAATGGATCAACAACCAAACCACCCATTTTATGAAAA---TGGGGAGTGGTC---- >Lolium_multiflorum AAGTCCTCCTCTTTCCGGACAAGATATACAAAGAGACCCGCCAGCTGTCTTTTTAGTGAATTTTTGAAAGATAGATTTTGAAAGATAGATATTATGATTAGTTCTTTATCTTTACTATCTACCGTCCTTCTATTTTTTT---AGTTATTCACTGGAGCAATTATATATTGAAGTCAATCCGAGGCAAGTGTTCGGATCTATTATGACATAAAGATTGGGTGCCTAAGGGACGTTGTTTATCTTGAAAAACAAATATTTCCCGACGTAAGAAAAAAAAATATTTTTGC-----AATTTTAGAAACTAGTGTATTTTTTTTTT--AGGGTGTAAGCTCCTATATACATCTACTTTCCTTGAG----CATAATATAGGGTTTTTTATTTTATTCTAAATTCCAAGATAACTCATTAGAGTTATTAATAATACAGTCCTGATATACTAGCGATATTTAGATTGCCCCTATTTTTTCTTTTTATTCACTTTATTACTTCTATTATAGACCCTATCCCTATGGTTTATCCTTATGAAATATCAGATAAAATAGAAGGTAGAAGAAAGGGATATAATGAAATTCTGGATTCGAGGATCTTACG--ACCTAATTTATTTGATTAATGGATCAACAACCAAACCACCCATTTTATGAAAAAGAAGGAGCGTGGTCTTTC >Lolium_perenne AAGTCCTCCTCTTTCCGGACAAGATATACAAAGAGACCCGCCAGCTGTCTTTTTAGTGAATTTTTGAAAGATAGATTTTGAAAGATAGATATTATGATTAGTTCTTTATCTTTACTATCTACCGTCCTTCTATTTTTTT---AGTTATTCACTGGAGCAATTATATATTGAAGTCAATCCGAGGCAAGTGTTCGGATCTATTATGACATAAAGATTGGGTGCCTAAGGGACGTTGTTTATCTTGAAAAACAAATATTTCCCGACGTAAGAAAAAAAAATATTTTTGC-----AATTTTAGAAACTAGTGTATTTTTTTTTT--AGGGTGTAAGCTCCTATATACATCTACTTTCCTTGAG----CATAATATAGGGTTTTTTATTTTATTCTAAATTCCAAGATAACTCATTAGAGTTATTAATAATACAGTCCTGATATACTAGCGATATTTAGATTGCCCCTATTTTTTCTTTTTATTCACTTTATTACTTCTATTATAGACCCTATCCCTATGGTTTATCCTTATGAAATATCAGATAAAATAGAAGGTAGAAGAAAGGGATATAATGAAATTCTGGATTCGAGGATCTTACG--ACCTAATTTATTTGATTAATGGATCAACAACCAAACCACCCATTTTATGAAAAAGAAGGAGCGTGGTCTTTC >ycf3:trnS-GGA >outgroup ATTCCCAACCCATTCTATATAGAATTCTTTTCATTCTATCACAAAATAACATAAAAACAAA-----ACATTCGATTCTT----ATAAATCGATCCATATGCTCTAAAT---------------GGATAAGAGAGGTATGGATTTTCCGCTCAGCTCAAAT------TGTCTCCTTTTCCTTCTGTTTGGACAAGAGGAGATATGAAATATTTGACTAAGACTGGATTTCATTCTACTTTTCTATTTCTCAACAACAACTTCTCTCATCAGCTATTTCACGTTTTCAAAGTCATTAATTGCCCCATAC---CCCTTTTTATATTTAGATTGTATGGCGTAACGTACCTTATGCAAATAGAATTCTAGGGTTCCTTTATTTTCTTATTCCATAAGAAGAATTCTTCCATTCTCTTTTTATTTTGGTTTTCCCCAAAGAAAAACTTTTCGAGGGAGTAGAATTCCTAGTAAAAAAATACGGGATCCTTTCACTTAGATGAAAAGGAATTTTCCCAATGGAGCCATGGAATCCCCGAGCCCTTCTATATGTACCTGTACTGTAGGAATACGAAAACTCGCTATTCACGCAGTTTATTTTTCATAATAAGATTATGGA >Lolium_multiflorum ATTCCCAACCCATTCCATATAGAATTGTTTTCATTCCTTCACAAAATAACATAAAAACAAACAAACACATTTGATTCTTAGAAATAGATCGATCTATATGCTCTAAATCCATATACTTTAAATGGATAAAAGAGATACGAATCTTCCGCTCAGCTCAAATTGTAATTGTATCCTTTTCCTTCTGCTTGGACAAGAAGAGATATGAAATATTTGACTAAGACTAGATTTCATTCCACTTTCTTATTTCTCAACAATAACTTCTCTCATCAGCTATTTCGTGTTTTCAAAGTCATTAATTGTCTCATACATACCCTATTTTGATTTCGATAATATGGTGTATCATACCTTATACAAACAGAATTATAAGGTTTCTTTATTTTATTATGCCATAAGAAGAATTCTTCCATTCTCTTTTT-CTTTGGTTGCAGGAAAACCTAAACTTTTATAAGGAGCGCAATTCCTAGTAAAAAAATACTAAA-----------------AAAGGGATTTTTCCAATAGAACTATGGAACCCCCGAGCAGTTGCGGTTATACCTGTCCTGCAGGAATAAGAAAACTCGCTATTCACTCAGTTTATTTTCCATAATAAGATTATGTA >Lolium_perenne ATTCCCAACCCATTCCATATAGAATTGTTTTCATTCCTTCACAAAATAACATAAAAACAAACAAACACATTTGATTCTTAGAAATAGATCGATCTATATGCTCTAAATCCATATACTTTAAATGGATAAAAGAGATACGAATCTTCCGCTCAGCTCAAATTGTAATTGTATCCTTTTCCTTCTGCTTGGACAAGAAGAGATATGAAATATTTGACTAAGACTAGATTTCATTCCACTTTCCTATTTCTCAACAATAACTTCTCTCATCAGCTATTTCGTGTTTTCAAAGTCATTAATTGTCTCATACATACCCTATTTTGATTTCGATAATATGGTGTATCATACCTTATACAAACAGAATTATAAGGTTTCTTTATTTTATTATGCCATAAGAAGAATTCTTCCATTCTCTTTTT-CTTTGGTTGCAGGAAAACCCAAACTTTTATAAGGAGCGCAATTCCTAGTAAAAAAATACTAAA-----------------AAAGGGATTTTTCCAATAGAACTATGGAACCCCCGAGCAGTTGCGGTTATACCTGTCCTGCAGGAATAAGAAAACTCGCTATTCACTCAGTTTATTTTCCATAATAAGATTATGTA >trnS-GGA:rps4 >outgroup TTCTCTTAATTCATCAATGTTAGCGATCAGAGTGTAGCAAATTAAATAACAATTTATTTCAACAATAATACCTTTATTTAATAAAAGG-CTCCATAGCAAATTACTGTGGTATGTAAAATCGAGGAAATAACAAAAAAGAAAAAAGGATCCTAGGGTTAATCTATTTCTGCTAGGTGAACGGGAAAATACGAATTAAGAGTCCTAGGTCGATTTAGTTCGGGGAAA-GGGGAAGGGAAAAAAATTCTATGAACCTTTCCTTTTTTCGTTAAGT >Lolium_multiflorum TTTTCTTAATTCATCAACCTTAAGGATCACAATGTATCAAATCAAATAACAATTTATTCTAGCAATAATATCTT-ATTTAATAGAAATTCTCTATAGCAAATTATTGTGGGATGTAAAATACA--------CATAGAGGAAAAAAAGATCCTAGGCTTAATCCATTTTTGCTAGTTGAGTGGGAAAATACAAATTAGTGGTCTTAGGTCGATTTAGTTCGGGGAAACGGTAAGGGGAAGAAAATTCTATGAACCTTTCCTTTTTTCGTTAAGC >Lolium_perenne TTTTCTTAATTCATCAACCTTAAGGATCACAATGTATCAAATCAAATAACAATTTATTCTAGCAATAATATCTT-ATTTAATAGAAATTCTCTATAGCAAATTACTGTGGGATGTAAAATACA--------CATGGAGGAAAAAAAGATCCTAGGCTTAATCCATTTTTGCTAGTTGAGTGGGAAAATACAAATTAGTGGTCTTAGGTCGATTTAGTTCGGGGAAACGGTAAGGGGAAGAAAATTCTATGAACCTTTCCTTTTTTCGTTAAGC >rps4:trnT-UGU >outgroup AAGACTCCTTTTTT-TTTTATTGAAATTTCATTTTACACAAGAAATTTCATTCTATTTACATTACGGAATACATCGAAATTAAAACTGAATTAAACTAAAGGATAAACAGAATAAAATCTACTA---------------AAGTACCACAAAAAATGGAATTTCATTAACATCTGGATTTTTTGT-ATATATATTATTTATTTTTATGCTTTTTATCTAGCAAAATTGTAAGGTAGAACGACATAATAGACTCTGGATTCCCCATTTAATTCGGGGAAAAAGA--GAAATTCTTGTTCATGGAACATCGATAGAGAAAAA >Lolium_multiflorum AAGACTCCTTTTTTATTTTATTGAAATTTCATTTTACACAATTAATTTCATTGTATTTACATTACAGAATACATCGAAATTAAAACTGAATTAAACTACAGGATAAATAGAGTAACATCAACTAGAGTAACATCAACTAAAGTACCACAAAAAAAGGAATTTCATCAAAATCTGTATTTTTTTTTATATATATTATTTATTTTATTGTTTTGTATCTAGCAAAATTGTAAGATAGAA-AACATAAAAGATCCTGGATTTCCCATTTAATTCGTAAAAAAAA---AAGATTCTTGTTCGTAGAATCTCGATAAAGAAAAA >Lolium_perenne AAGACTCCTTTTTTATTTTATTGAAATTTCATTTTACACAATTAATTTCATTGTATTTACATTACAGAATACATCGAAATTAAAACTGAATTAAACTACAGGATAAATAGAGTAACATCAACTAGAGTAACATCAACTAAAGTACCACAAAAAATGGAATTTCATCAAAATCTGTATTTTTTTTTATATATATTATTTATTTTATTGTTTTGTATCTAGCAAAATTGTAAGATAGAA-AACATAAAAGATCCTGGATTTCCCATTTAATTCGTAAAAAAAAAAAAAGATTCTTGTTCGTAGAATCTCGATAAAGAAAAA >trnT-UGU:trnL-UAA >outgroup -------------------------------------------------------------------------------------------------------------TACATAACAGAAATAGTGTAACAAATAGAAATATATATAGGGAATCCGTAAAATGTAAAATCTTAATGATATTATTAAATA-ATGATATTATTAAATAGGATTATCGAATTTATTTAACTTTCTTTTTATTTCTCTAATTCTAATTCGCAAATGGATTTTTCTAATAGAATCTATTCCAAATTCTATATTG-AATTTCATTTTAGATATTTTCAATTTGATATGGCTCGGACGAATAATCTAATACATAGAAAAGAAGAATATATATG---AAGAATTAACAAAGAGAAAATGTGAATCTCTTGGCATTTTCATTCGATCATTATATACAGAGATAT----TTTTTTTTTATTTGTTAATAATTTAAGGATAAATAGTTCACTAAGGAGAAGATAGAATCATAGCAAATGAAATTTCTAATTCAGATTACAA------GAATGAATATCAAGCGTTATAGTATGATTTTGAATACTCTAAAAAAAGAAGGGGGTAGGCGGGATAGAGAAAAACTTTTGGATATATTCATTCCGATTGAATTGCAAATATATCAACGATAGAATCAATTCAATTCTGAATTGCAATAAGCGAGCGGGGTCTCTCAAATAAAGATGAGCTGCTAGACTACGTCGAATAATGAATTCAATGATTCAAAAAAAA--CTAAGAGATGGATGAAATTATACAAGGAATCCAGGTTTCAAAGAAAAAGAAAAT >Lolium_multiflorum TACATAGCAGAAATAGTGTAACAAATAGAAATAGGTATAGTATAGGAAATCCGTAAAATCTCAGATCTTATTTATTAATCTTAGCTATTAACTAGTTCGAAATTTAAAGTTCGACTTATACTTAATAATACTTATAAAAAAAAATACTAAAACTTCTTACAG-ATAAAGTTAGCTTGATATGCTTAAGTAGAAGATATCTTTAAATAAAATTATAGAATTTATTGAACTTT-TTTTTATTTCTCTAATTAGCAAATGCATTTTTCTATATAGAATGGATTTGATTCCAATTTCTATAATGGAATTGGATTTCAGATATTTTCAATTTGATATGGCTCGGACGAATAATCTAATACATAGAAAAGAATAATATATATATGAAAGATATAATAAAGAGAAAATACAAATTTATTGGCATTTTCATTCGATCATTATCGACTTTATTTTGAGATATTTTTTTATTTGTAAATAATTTGAGAATTCCTATTTAACTAAGGAGAACATAGAGTCATAGCAAATAAAATTGCTAATTCTGATTAGAAAAAAAAGAATTAATATCAAGCGTTATAGTATGATTTTAAATACTCTAAAAAAGTCATAAAGGGGGTCGGGGAGAGAAAAACTTTTGGATATATTGATTCGGATTGAATTGCAAATACATCAACGATACAATCAATTCAATTCTGAATTGCAATAAGCAAGCGGTGTCTCTCAAATAGAGTCGAACTGCTAGACTACGCCGAGTGATGAATTCAATGATTCAAAAAAAAAACTAAGAGATGGATGAAATTACACAAGGAATCTTTGTCTCAAAGAAGAGGAAAAT >Lolium_perenne TACATAGCAGAAATAGTGTAACAAATAGAAATAGGTATAGTATAGGAAATCCGTAAAATCTCAGATCTTATTTATTAATCTTAGCTATTAACTAGTTCGAAATTTAAAGTTCGACTTATACTTAATAATACTTATAAAAAAAAATACTAAAACTTCTTACAG-ATAAAGTTAGCTTGATATGCTTAAGTAGAAGATATCTTTAAATAAAATTATAGAATTTATTGAACTTT-TTTTTATTTCTCTAATTAGCAAATGCATTTTTCTATATAGAATGGATTTGATTCAAATTTCTATAATGGAATTGGATTTCAGATATTTTCAATTTGATATGGCTCGGACGAATAATCTAATACATAGAAAAGAATAATATATATATGAAAGATATAATAAAGAGAAAATACAAATTTATTGGCATTTTCATTCGATCATTATCGACTTTATTTTGAGATATTTTTTTATTTGTAAATAATTTGAGAATTCCTATTTAACTAAGGAGAACATAGAGTCATAGCAAATAAAATTGCTAATTCTGATTAGAAAAAAAAGAATTAATATCAAGCGTTATAGTATGATTTTAAATACTCTAAAAAAGTCATAAAGGGGGTCGGGGAGAGAAAAACTTTTGGATATATTGATTCGGATTGAATTGCAAATACATCAACGATACAATCAATTCAATTCTGAATTGCAATAAGCAAGCGGTGTCTCTCAAATAGAGTCGAACTGCTAGACTACGCCGAGTGATGAATTCAATGATTCAAAAAAAAAACTAAGAGATGGATGAAATTACACAAGGAATCTTTGTCTCAAAGAAGAGGAAAAT >trnL-UAA:trnF-GAA >outgroup ACCCTCTTTTATTCCCTAACC-ATAGTAGTTATCCTTTTTTTTTCTTTTACTTTTATCAATGGGTTTAAGATTCATTAGCTTTCTCATTCTACTCTTTCACAAAGGAGTGCGACGCGAACTCAATGAATCTTATGCTATTCATTAAATAGATGATTTCTTTTTTATTAGAGTAGAGTATCGGCAAGGAATCTCGATTATTAATTCGATTTTTAAGTATTATTAAGTAAGCCATCCACAATGCATAGGACTACCCCTCCCC-------------ATTTCCAAATTTGGAATACTTTA-----TTGATTTTTTAGTCCCTTTAATTGACATAGATGCAAATACTCTACTAAGATGATGCACAAAAAAGG >Lolium_multiflorum ACCCTCCTTTATTCCCTAACTTATAGTATTTATCCTCTTTTTTCTTTTTA------TCACAGGGTTTAAGATTCATTAGCTTTCTCATTCTACTCTTTCACAAAGGAGTGCGAAGAGAACTCAATGGATCTTATCCTA------GAATATAT---TTGTTTTTTATTAGAGTA-----TCGGGAAAGAATCCCGGTTATTCGCTCTATTTTTCAGTATTATTAAGTAAGCCATGTACAATGCATAGGACTACCCCCCCCC------ATTTTACAATTTCGAATTTGAAATCCTTTATTTAATTTATTTTTTAGTCCCTTTAATTGACATAGATACAAATACTCTACTAGGATGATGCACAAGAAAAG >Lolium_perenne ACCCTCCTTTATTCCCTAACTTATAGTATTTATCCTCTTTTTTCTTTTTA------TCACAGGGTTTAAGATTCATTAGCTTTCTCATTCTACTCTTTCACAAAGGAGTGCGAAGAGAACTCAATGGATCTTATCCTA------GAATATAT---TTGTTTTTTATTAGAGTA-----TCGGGAAAGAATCCCGGTTATTCGCTCTATTTTTCAGTATTATTAAGTAAGCCATGTACAATGCATAGGACTACCCCCCCCCCCCCCCATTTTACAATTTCGAATTTGAAATCCTTTATTTAATTTATTTTTTAGTCCCTTTAATTGACATAGATACAAATACTCTACTAGGATGATGCACAAGAAAAG >trnF-GAA:ndhJ >outgroup AGAAAATCAAAGGATCTACCGAATAGATATTGATACAAATATCTTGAGATGGATTGGGGTACATATTCATTAATAATCTAGATAGTATAGAGT----------AAGTAGATAAATCTCTAA--------------ACACCTCGTTTTAGAAAAG--GGTTAAAATCTTTGGTTCCTTTCTTTATGGTATAAAAAGAGGTGAAATTAGGTGCCCTTTTCTTCATTTTTACATTTCTTATTAATTTTGTATGCCGCTATTTCGAAGAATATTTTTCTATTCTTGCTTATC------CTACTTTCCTAGTTGTTCTAAGTAATACGCGCGGTACAAAGTTCGTGGTAG-GAACTTCTTTGAGTCATTGTATTTTTCTGTTCAT-ACGAAGGAAACGAATATGTGATTTTCAAAA------ATTGAAATGAAGCCCTTTTT--GTTCAGTCTATCTGGACC-TTTTTGTATAATAAGAATTAATTTGACTATAATAAGTATTTCGTTTCGTCTAGGAACAGAACATAAAAATATTCCTTGATTTGAATAAAATCAGGAGTTGTGTTGTATAAGTGAACATGAATTTATTATCAT >Lolium_multiflorum AGAAAAA-AAAAGATCTACCGAATAGGTATTGATACAAATACCTCGAGATGGGTTGGGATACATATTCATTAATAATATAAATAGAGTATGATTTATTCATCTAAGTGGATAAGTCTATAATAAAGAATAAAGAAGCACTTCTTTTTATAGAAGTAGAAAGAAAAAAATATATCTTTTCTTTATGGTACAGAAGGAGGTTAGATTAGGCTCCCCCTTTATTTTTTTTT-GCATTTC-TTAATTTTATATTCTGCTATTCCGACGAATCTTTTTTTAGTCTTGCTTATCTTAATCTTACTTTCCTAGTTGTGCTAAGTCATGTGCGCGATACAAAGTTCGTGGTAGAGAACTTCTTTGAGTCATCCTATCTTTCTGTTCATTATGAAGGAAATTAATATGTGATTTTCAAAATAGGGAATCTAAATGAAACCTTTTTTTTGCTCAGTCTATCTGGACTGCTTTTGTATAATAGGATTTAATTAGA----AATAGGTATTCCGTTTCATCTAGGAACAGAACGTAAAAATATCCCTTTACTGGAATAAAATCTGGAATTGTGTTGTATAAGTGAGCATGAATTTTTTATCAT >Lolium_perenne AGAAAAA-AAAAGATCTACCGAATAGGTATTGATACAAATACCTCGAGATGGGTTGGGATACATATTCATTAATAATATAAATAGAGTATGATTTATTCATCTAAGTGGATAAGTCTATAATAAAGAATAAAGAAGCACTTCTTTTTATAGAAGTAGAAAGAAAAAAATATATCTTTTCTTTATGGTACAGAAGGAGGTTAGATTAGGCTCCCCCTTTATTTTTTTTTTGCATTTC-TTAATTTTATATTCTGTTATTCCGACGAATCTTTTTTTAGTCTTGCTTATCTTAATCTTACTTTCCTAGTTGTGCTAAGTCATGTGCGCGATACAAAGTTCGTGGTAGAGAACTTCTTTGAGTCATCCTATCTTTCTGTTCATTATGAAGGAAATTAATATGTGATTTTCAAAATAGGGAATCTAAATGAAACCTTTTTTTTGCTCAGTCTATCTGGACTGCTTTTGTATAATAGGATTTAATTAGA----AATAGGTATTCCGTTTCATCTAGGAACAGAACGTAAAAATATCCCTTTACTGGAATAAAATCTGGAATTGTGTTGTATAAGTGAGCATGAATTTTTTATCAT >ndhJ:ndhK >outgroup GTCTTGATCTCTCCCCCTTTGTATAAATATTTCA--TTTCAAATGCAAGTTTGAAAGATTGCACTGCTCTTTCTTTTTCTGCACAAAAGAACCCCTC----- >Lolium_multiflorum GTCTTCATCTCTCCCTCTTTGTATAAATATTTCACATTTCGGATGCAAG----AAAGATTGCCCGGCTTTTCATTTTTCTACACAAAAAAGCCCCATCCCTC >Lolium_perenne GTCTTCATCTCTCCCTCTTTGTATAAATATTTCACATTTCGGATGCAAG----AAAGATTGCTCGGCTTTTCATTTTTCTACACAAAAAAGCCCCATCCCTC >ndhK:trnV-UAC >outgroup CCAAGGCTCCTTTTCGCCATGCATAAACTAAACCAACAACTAGGATAAGCACAAAAATGAAAGCTTCAATAAAAACGGATAAACCCAATACGTCGAAACTCATTGCCCAAGGGTAGAGAAAGACCGTTTCCACATCAAAAACAACAAAAACTAGCGCAAACATGTAATAGCGTATTCGGAATTGTAACCAAGCCCCCCCCATGGGTTCTATACCCGATTCATAACTAGAAAGCTTCTCTGGTCCTTTACTAACCGGGGCTAAAAGTCCTGAAATCCAAAATACCAAAATAGGAATAAGACTTGCTATTATTAGAAATGTCCAAAAAATATCATATTCGTGAAGCAGAAACATAAATGTACTCCCATTAATGTGGAATAGGCGGAACT-GAATTAGTCAATTCAAGTTGACATTGTCAATTTATCCAGAACTTCTCTCTTTTCCTCAGTGAAACAAGAATCCGTTTTGCTCAAACCAAAGGCAAAGGCAAAGAGCGCTTACTTTAGCCTTTGGTTCTTTTGTGATATGTCTTCCTTAAGGATTCGT-----CCAATGGAATCCCCATTCCCTTTCTTTTGGATTTCCCTTCTATTTAGATATGATATAGACCTAATTCTTATACAAAGATAATTCTTTCGCTTCACTTTGTCTCGCTTTTTCTAGAATCTCTAGAAAAAAAGAATTGCTCTACCCTTTATTTAATGA-----TAGTCAGAGACTATTAAATAAAAAATAAAATATT------------------TACT--------ACTAAT--------TATAATTAG-----ATACTAAAAAA--------------------------------------------AAAAAGAACTCTATTTCAGAATTATGAAACAGAATATCCAGT-TTTATTATTTACTCTTTCTCTTTTTTTCTCTCGATTTTTTCTATTTTATTTAAAGTAGATCTATTTAGATAATGTA-------GATAATGTA-TATATATAC---------------------TTCAAACAAAATACAAACTCGCAAAATGGAAAAAATCGTTGCAGTCATTATAGGAAAGTATAGGTACTTAGAGCATATCCTATTTGAAGGAGGATGGAATTTAAATCAGGTAAGGGATCCTTCCTTCTATTGATTTGATCAAAATTCTTTTTTCTTTTCTTGTCTCTATGA---------------AATGAGCCTATAGTAATGCTTTTATCTCTATTCTATGGCGCAATCTACCGTCGAGTCTATAAACGAGTACTAATAAAGAAATAAGGAAAAGAAAACTATACTAAAGGAAACATAAGATATCCATCCTAAAATGGAAAAAAAGACGTATATAT >Lolium_multiflorum CCAAGGCTCCTTTTCGCCATGCATAAACTAAACCGACAACTAGGATAAGCACGAAAATAAAAGCTTCAATAAAAACGGATACACCCAATACGTCGAAACTCATTGCCCAAGGGTAGAGAAAGACGGTTTCGACATCAAAAACAACAAAAACTAGCGCAAACATGTAATAGCGTATTCGGAATTGTAGCCAAGCTCCCCCCATGGGTTCTATACCCGATTCATAACTAGAAAGCTTCTCAGGTCCTTCACTAACCGGGGCTAAAAGCCCTGAAATCCAAAATGCCAAAATAGGAATAAGGCTTGCTATTATTAGAAATGTCCAAAAAATATCATATTCGTGAAGCAGAAACATAA-TGTACTCCCATTAATGTGGAATAGGCGGAACTTAAATTAGTCAATTCGATTCAGCATTGTCAATTTATCCAGAACTTATCTCTTTTCCTTGGTGAAACAAGAATCCGTTTTGTTCAAAC--------------AAAAGCGCTTAGTTTAGCCTTTGTTTGCTCTGTGCTGCATCTTCTTTAAAGATGCATTGCATCCAATGGAATCCCGACTCCCTTCTTTTTTGATTTCCATTCTATTTAGATATGGTGTAGGTCTAATTCTTATATAAAGAAAACTCTATCGCTTCACTTTGTCTCGCTTTCTCTAGAATCTCTAGAAAAAG-GAATTGCTCTATCCTTTATTTAATAATATTATAATAATAGACTATTAAATAAAAATTAGAATACTACTAAATTAGAACCTAATTACAATAGAAGGACTAATCTATGCAGTATAATGAGAAGTAATACTATAAAACAGTATAATGAGAAGTAATACTATAAAAAGAAAAAATAAATAAAAAAAAGAACTCTATTTCAGAACTATGAGAGAGAATATTCTGTATTTCTTATTTCCTCTTTACTTTATTTTTTTTCTATTTAAAGTGGATCAATTTAGATAATGTAAGTTAGATAATTTAACTATAAGCTAAAGTACTAAATATACAAGCTAAAGTACTAAATATACTTAAAACAAGGTAGTAATTTGCAAGATGGATAAAATAATTGCAGTTATTATAGGGAAGTATAGAGA---------TATCCTATTTAAAGGAGGACGGGATTCAAATCAGAGAAGGTATCCTTCTTTCTATTAATTTGATAGAAATTTGTTTTTCTTTTCCTGTCTCTATGATTTTGATTTTCGATGAATGAGCCTGTGGTAATGCTTTTATCTCTATTCTATA----AATCTA-----AAAAAAAAAAAGACATAT---------------------------------------------------------------------------------- >Lolium_perenne CCAAGGCTCCTTTTCGCCATGCATAAACTAAACCGACAACTAGGATAAGCACGAAAATAAAAGCTTCAATAAAAACGGATACACCCAATACGTCGAAACTCATTGCCCAAGGGTAGAGAAAGACGGTTTCGACATCAAAAACAACAAAAACTAGCGCAAACATGTAATAGCGTATTCGGAATTGTAGCCAAGCTCCCCCCATGGGTTCTATACCCGATTCATAACTAGAAAGCTTCTCAGGTCCTTCACTAACCGGGGCTAAAAGCCCTGAAATCCAAAATGCCAAAATAGGAATAAGGCTTGCTATTATTAGAAATGTCCAAAAAATATCATATTCGTGAAGCAGAAACATAA-TGTACTCCCATTAATGTGGAATAGGCGGAACTTAAATTAGTCAATTCGATTCAGCATTGTCAATTTATCCAGAACTTATCTCTTTTCCTTGGTGAAACAAGAATCCGTTTTGTTCAAAC--------------AAAAGCGCTTAGTTTAGCCTTTGTTTGCTCTGTGCTGCATCTTCTTTAAAGATGCATTGCATCCAATGGAATCCCGACTCCCTTCTTTTTTGATTTCCATTCTATTTAGATATGGTGTAGATCTAATTCTTATATAAAGAAAACTCTATCGCTTCACTTTGTCTCGCTTTCTCTAGAATCTCTAGAAAAAG-GAATTGCTCTATCCTTTATTTAATAATATTATAATAATAGACTATTAAATAAAAATTAGAATACTACTAAATTAGAACCTAATTACAATAGAAGGACTAATCTATGCAGTATAATGAGAAGTAATACTATAAAA----------------------------AGAAAAAATAAATAAAAAAAAGAACTCTATTTCAGAACTATGAGAGAGAATATTCTGTATTTCTTATTTCCTCTTTACTTTCTTTTTTTTCTATTTAAAGTGGATCAATTTAGATAATGTAAGTTAGATAATTTAACTATAAGCTAAAGTACTAAATATAC---------------------TTAAAACAAGGTAGTAATTTGCAAGATGGATAAAATAATTGCAGTTATTATAGGGAAGTATAGAGA---------TATCCTATTTAAAGGAGGACGGGATTCAAATCAGAGAAGGTATCCTTCTTTCTATTAATTTGATAGAAATTTGTTTTTCTTTTCCTGTCTCTATGATTTTGATTTTCGATGAATGAGCCTGTGGTAATGCTTTTATCTCTATTCTATA----AATCTA-----AAAAAAAAAGACATAT------------------------------------------------------------------------------------ >trnV-UAC:trnM-CAU >outgroup GTCAGAGATATCTTAACATATAGATAATTTCTTGTCAAGATGAATATTCTCTAATGCCAGAGGATATCCCTCTGATCCGTTTACTATATAACATAAACATACCAATAACATAACATAAACATACCAATAACGGGG-GGTATTGCTTATAAAAAGGATTCGATCTATAATCGATCGAAGTAATGGGGCTTCTTTTGTGGTGATAAATT >Lolium_multiflorum ATCAGGGATATCTTAACATATAGATAATTTCTTGTCAAGATGAATATTCTCTAATGCCAGAGGATATCCCTTTGATCTGTAT-CTGTTTAGTATATA---------------------ACAGACAAATAACGGAGCGGTATTGCTTAGAAAAGTGATTCAATATATAATCGATCGAAGTAATGAGTGTTCCTTTGTGGTGATAAATT >Lolium_perenne ATCAGGGATATCTTAACATATAGATAATTTCTTGTCAAGATGAATATTCTCTAATGCCAGAGGATATCCCTTTGATCTGTAT-CTGTTTAGTATATA---------------------ACAGACAAATAACGGAGCGGTATTGCTTAGAAAAATGATTCAATATATAATCGATCGAAGTAATGAGTGTTCCTTTGTGGTGATAAATT >trnM-CAU:atpE >outgroup GTAGGTAGAAAAATTACTAGATAGCATTGGACTTATTTCGCTTCGCTATCTAATAACTTTTTCTACCCTTCTTTCCTTTTTCTTTGTATCAACG--AAACCTTTGGATTGTCT >Lolium_multiflorum GTAGGTAGAAAAATTACTAGATAGCGTTGGACTTACTTCGCTTCGCTATCTAATAACTTTTTCTACCCCTATTCTCTTTTTCTTTGTATCAACTATAAACCATTGGATTGTCT >Lolium_perenne GTAGGTAGAAAAATTACTAGATAGCGTTGGACTTACTTCGCTTCGCTATCTAATAACTTTTTCTACCCCTATTCTCTTTTTCTTTGTATCAACTATAAACCATTGGATTGTCT >atpE:rbcL >outgroup TCTTCAATTTGCTCTCCTCTTCTAAGTTTATAGCTTTCGTGCTAGCTTCATCGATATTCCCCACCAAATAAAAAGCCTGTTCGGGTAGGCTGTCTAATTCTCCGGAAAGGATTAGTTGAAATCCCCTAATCGTTTCCGCAAGACCAACATACTTTCCTGGAGAACCGGTAAAAACTTCTGCCACAAAGAACGGTTGTGATAAGAACCGCTCGATTTTTCGTGCTCTTGCTACAGTTAAACGATCCTCCTCCGATAATTCATCCAACCCAAGAATTGCGATAATGTCCTGAAGTTCTTTGTAACGTTGTAAAGTTTCCTTAACTCTTTGCGCAGTTTCATAATGTTCGTTGCCAACGATCCGAGGCTGTAACATAGTTGAGGTTGAATCTAAAGGATCTACTGCGGGATAAATACCCTTGGAAGCTAATCCTCTGGAAAGTACGGTAGTAGCGTCCAAATGTGCAAATGTTGTGGCAGGAGCAGGGTCGGTCAAATCGTCTGCAGGTACATAAACAGCTTGGATCGAAGTTATGGATCCTTTTTTGGTAGAAGTAATTCTTTCTTGCAAAGAACCCATTTCTGTACTAAGGGTAGGTTGATAACCCACTGCGGAGGGCATTCTACCTAATAAGGCGGATACTTCCGATCCCGCTTGAACAAAACGAAAGATATTATCGATGAATAAAAGCACGTCTTGCTTATTAACATCTCGGAAATATTCCGCCATAGTTAGGGCAGTTAAACCAACTCTCATACGAGCTCCCGGCGGTTCATTCATTTGGCCATAGACTAGAGCTACCTTTGATTCCTCAATATTTTTTTCATTAATTACTCCAGATTCCTTCATTTCCATATAAAGATCATTTCCTTCACGAGTCCGTTCCCCTACTCCGCCAAATACAGATACGCCTCCATGCGCTTTAGCAATGTTATTGATTAATTCCATGATGAGTACTGTTTTACCTACTCCTGCCCCCCCAAATAGTCCGATTTTTCCTCCACGTCGATAAGGAGCTAAAAGATCGACCACCTTAATACCTGTTTCAAAGATCGATAATTTCGTATCTAACTCGATAAAGGCAGGCGCGGATCTATGAATAGGGAATGTTGCACTAGTATCTACAGGACCCAAATTGTCAATAGGCTCCCCAAGAACGTTAAAAATTCGTCCGAGAGTAGCTCCACCGACTGGAACACTCAGAGGAGCTCCCGTGTCAATCACTTCCATTCCTCTCATCAACCCGTCTGTAGCACTCATAGCTACAGCTCTAACTCGATTATTTCCTAATAATTGTTGTACCTCACAAGTCACATTAATTTGCTTATCTGCAGTGTCTCGACTCTTGACTATCAAAGCGTTATAAATATAAGGCAACTTGCCCGGGGTAAAAGTGATATCCAGCACGGGTCCAATAATTTGATCAATACGCCCTGCGCTTTTTTCTTCAATTGTGGAAACCCCGGGACGCGAAGTAGTAGGATTGGTTCTCATAATTATCACATAATAAAAAAAAAAAAGGAATTTGTCGAAATTTTTCTTTTTTTTTTTGTTAAATAATGCCAAATCAAATCAAAAAAAATATCCAAAAATCCAAAAGTCAAAAGGAAATGAATTAGTTAATTCAATAACAAAGAAAAGGGGACTAGCACTTGATTTCGTTGCCCAAGCGAATCCTACTCAATCGTTTACTTATGGAATGAGTCCGTTGGAAAGTTCAATCAATCTTTTTTTTTCATA---TAAATTTCGCCTTTTGTGAAGGATCTGTGCCTACTCGACTTTCCTATCTAGGACTTCGATATATAAAATATATACTACTGTGAAGCATAGATTGCTGTCAACCAACAGAGAATTTTCTTAGTATTT----AGGTATTTAGATTCAAAATAGCAAAGGGGCCTATTAAGAACTTTCCAAATTGTAAAATAAGGATTAGGGATTGGTTTGGGTTGCGCTATATCTATCAAAGAGTATACAATAATGATGGATTTGGTGAATCAAATCCACGGGAACCGTGTTAACTTACCATAACAACAACTCACCATAATAACAACTCAATTCCTATCGAATTCCTATAGTGGAATTCCTATAGGATAGAACGTACACAGGGTGCACGCATTATATATGAATGAAACATATTCATTAACTTAAGCATACTCCTTTTTTTATTTAATGAGTTGATATTAATTGAAT---ATCTTTTTTTTTTTTTTTTAGATTTTTGCAAAGGTTTCATTTACGCCTAATCCATATCGAGTAGACCTTGTCGTTGTGAGAATTCTTAATTCATGAGTTGTAGGGAGGGACTT >Lolium_multiflorum TCTTCGATTTGTTCTCCTCTTCTAAGGTTATAGCTTTCGTGCTAGCTTCATCGATGTTACCCACCAAATAAAAAGCCTGTTCGGGTAGGCCATCTAATTCTCCCGAAAGTATTAGTTGAAATCCCCTAATAGTTTCTGCAAGACCAACATACTTTCCTGCGGAACCGGTAAAAACTTCTGCCACAAAGAATGGTTGTGATAAGAAACGCTCAATTTTTCTTGCTCTTGCTACAGTTAAACGATCTTCCTCCGATAATTCATCCAACCCAAGAATAGCGATAATGTCCTGAAGTTCTTTGTAACGTTGTAAAGTTTCCTTAACTCTTTGCGCAGTTTCATAATGTTCGTTGCCAACAATCCTAGGCTGTAACATAGTTGAGGTTGAATCTAAAGGATCTACTGCTGGATAAATACCCTTGGAGGCTAATCCTCTGGAAAGTACGGTAGTAGCATCCAAATGTGCAAATGTTGTGGCAGGAGCAGGGTCGGTCAAATCGTCTGCAGGTACATAAACTGCTTGAATCGAAGTTATAGATCCCTTTTTAGTAGAAGCAATTCTTTCTTGCAAAGAACCCATTTCTGTACTAAGAGTAGGTTGATAACCCACTGCAGAAGGCATTCTCCCTAATAAAGCGGATACCTCCGATCCTGCTTGAACAAAACGAAAGATATTATCGATGAATAAAAGCACGTCTTGCTTATTAACATCTCGGAAATATTCTGCCATAGTTAGGGCAGTTAAACCAACTCTCATACGAGCTCCCGGTGGTTCATTCATTTGGCCATAGACTAGAGCTACCTTTGATTCCTCAATATTTTTTTCATTAATTACTCCGGATTCCTTCATTTCCATATAAAGATCATTTCCTTCACGAGTCCGTTCCCCGACTCCACCAAATACGGATACGCCCCCATGAGCTTTAGCAATGTTATTGATTAATTCCATGATGAGTACTGTTTTACCTACTCCGGCCCCCCCGAATAGTCCTATTTTTCCTCCACGTCGATAAGGAGCTAAAAGATCGACGACCTTAATACCTGTTTCAAAGATGGATAATTTCGTATCTAACTCGATAAAGGCGGGTGCAGATCTATGAATAGGGAACGTCGCACTACTATCTACAGGACCCAAATTGTCAACAGGCTCCCCAAGAACGTTGAAAATTCGTCCGAGAGTAGCTCCGCCGACCGGAACACTGAGAGGAGCTCCCGTGTCAATCACTTCCATTCCTCTCATCAACCCGTCTGTAGCACTCATAGCTACAGCTCTAACTCGATTATTTCCTAATAATTGTTGTACCTCACAAGTCACATTAATTTGCTTATTGGCAGTGTCTATACTCTGGACTACCAAAGCATTATAAATATAAGGTAACTTGCCCGGGGGAAAAGTGACATCTAGCACGGGTCCAATAATTTGATCGATACGACCTGTACTTTTTTCTTCAATTGTGGAAACCCCGGGACGAGAAGTAGTAGGATTGGTTCTCATAATTATCACATAATAAAAAAAA-----GAATTCGTCGAAATTTTTCTTTTTTTCTT-GTTGAATAATGCCAAATCAAATCAAAAAAA-TATCCAAAAATACAAAAGTAAAGAGAAAATGAATTAGTTAATTCAATAAGAGAGAAAAGGGGGCCAGGACTTTATTTCGTTGCCCAAGCGAATCCCATTCAATCGTTTACTCATGGAATGAGTCCGTTGGAAAATTCAATCAATGTTTTTTTCCTATACTATACATTTTGCCTTTTGTGGAAGATCTGTGCCTACTCTACTTTCCTATCTAGGACTTCGATATACAAAATATATACTACTGTGAAGCATAGATTGCTGTCAAC----AGAGAATTTTCTTAGTATTTAGTTAGGTATTTGCACTCAAAATAAGAAAGGAGCCTATTAATAACTT--------GTAAAATAAGAATTAGGAATTGATTTGGGTTGCGCTATATCTATCAAAGAGTATACAATAATGAAGGATTTGGTAAATCAAATCCACGG----TTTAATAATGAACCGTGTTAAC---TTACCATAACAACAACTCAATTCCTATTGAATTCCTATAACGGAATTCCTGTAGGATAGAAGATACACAGAGTGTACACAGTATATATGAATGAAACATCTTCATTAACTTAAGTATGCCCTCAATTTTCTTTAATGAGTTGATATTATATTAATTGAATATCCTTTTTGTTTTACGAGATTTTTGCTAAAGTTGGATTTACGCCTAATTCACATCGAGTAGACCCTGTTATTGTGAGAATTCTTAATTCAAGAGTTGTAGGGAGGGACTT >Lolium_perenne TCTTCGATTTGTTCTCCTCTTCTAAGGTTATAGCTTTCGTGCTAGCTTCATCGATGTTACCCACCAAATAAAAAGCCTGTTCGGGTAGGCCATCTAATTCTCCCGAAAGTATTAGTTGAAATCCCCTAATAGTTTCTGCAAGACCAACATACTTTCCTGCGGAACCGGTAAAAACTTCTGCCACAAAGAATGGTTGTGATAAGAAACGCTCAATTTTTCTTGCTCTTGCTACAGTTAAACGATCTTCCTCCGATAATTCATCCAACCCAAGAATAGCGATAATGTCCTGAAGTTCTTTGTAACGTTGTAAAGTTTCCTTAACTCTTTGCGCAGTTTCATAATGTTCGTTGCCAACAATCCTAGGCTGTAACATAGTTGAGGTTGAATCTAAAGGATCTACTGCTGGATAAATACCCTTGGAGGCTAATCCTCTGGAAAGTACGGTAGTAGCATCCAAATGTGCAAATGTTGTGGCAGGAGCAGGGTCGGTCAAATCGTCTGCAGGTACATAAACTGCTTGAATCGAAGTTATAGATCCCTTTTTAGTAGAAGCAATTCTTTCTTGCAAAGAACCCATTTCTGTACTAAGAGTAGGTTGATAACCCACTGCAGAAGGCATTCTCCCTAATAAAGCGGATACCTCCGATCCTGCTTGAACAAAACGAAAGATATTATCGATGAATAAAAGCACGTCTTGCTTATTAACATCTCGGAAATATTCTGCCATAGTTAGGGCAGTTAAACCAACTCTCATACGAGCTCCCGGTGGTTCATTCATTTGGCCATAGACTAGAGCTACCTTTGATTCCTCAATATTTTTTTCATTAATTACTCCGGATTCCTTCATTTCCATATAAAGATCATTTCCTTCACGAGTCCGTTCCCCGACTCCACCAAATACGGATACGCCCCCATGAGCTTTAGCAATGTTATTGATTAATTCCATGATGAGTACTGTTTTACCTACTCCGGCCCCCCCGAATAGTCCTATTTTTCCTCCACGTCGATAAGGAGCTAAAAGATCGACGACCTTAATACCTGTTTCAAAGATGGATAATTTCGTATCTAACTCGATAAAGGCGGGTGCAGATCTATGAATAGGGAACGTCGCACTACTATCTACAGGACCCAAATTGTCAACAGGCTCCCCAAGAACGTTGAAAATTCGTCCGAGAGTAGCTCCGCCGACCGGAACACTGAGAGGAGCTCCCGTGTCAATCACTTCCATTCCTCTCATCAACCCGTCTGTAGCACTCATAGCTACAGCTCTAACTCGATTATTCCCTAATAATTGTTGTACCTCACAAGTCACATTAATTTGCTTATTGGCAGTGTCTATACTCTGGACTACCAAAGCATTATAAATATAAGGTAACTTGCCCGGGGGAAAAGTGACATCTAGCACGGGTCCAATAATTTGATCGATACGACCTGTACTTTTTTCTTCAATTGTGGAAACCCCGGGACGAGAAGTAGTAGGATTGGTTCTCATAATTATCACATAATAAAAAAAA-----GAATTCGTCGAAATTTTTCTTTTTTTCTT-GTTGAATAATGCCAAATCAAATCAAAAAAA-TATCCAAAAATACAAAAGTAAAGAGAAAATGAATTAGTTAATTCAATAAGAGAGAAAAGGGGGCCAGGACTTTATTTCGTTGCCCAAGCGAATCCCATTCAATCGTTTACTCATGGAATGAGTCCGTTGGAAAATTCAATCAATGTTTTTTTCCTATACTATAAATTTTGCCTTTTGTGGAAGATCTGTGCCTACTCTACTTTCCTATCTAGGACTTCGATATACAAAATATATACTACTGTGAAGCATAGATTGCTGTCAAC----AGAGAATTTTCTTAGTATTTAGTTAGGTATTTGCACTCAAAATAAGAAAGGAGCCTATTAATAACTT--------GTAAAATAAGAATTAGGAATTGATTTGGGTTGCGCTATATCTATCAAAGAGTATACAATAATGAAGGATTTGGTAAATCAAATCCACGG----TTTAATAATGAACCGTGTTAAC---TTACCATAACAACAACTCAATTCCTATTGAATTCCTATAACGGAATTCCTGTAGGATAGAAGATACACAGAGTGTACACAGTATATATGAATGAAACATCTTCATTAACTTAAGTATGCCCTCAATTTTCTTTAATGAGTTGATATTATATTAATTGAATATCCTTTTTGTTTTACGAGATTTTTGCTAAAGTTGGATTTACGCCTAATTCACATCGAGTAGACCCTGTTATTGTGAGAATTCTTAATTCAAGAGTTGTAGGGAGGGACTT >rbcL:psaI >outgroup TAAAACTAGATATAAAGAAGGTCTAAATAAAATAAAAAAGAAGAAAAATAGACAGAGAAAAATCCGTTACAAAATACAGTAATTCTTCTTTATTAGTAATTCTTCTTTATTAATTGATTGCAATTAAATTCGGCTCAATCCTTTTTTCTAAAAAAAGATTGAGCCGAATTTAAATAGATCTTGATACGATCATGAGACTTGACAAATCGAGATTCTTCTATTCTATA-TATCTAGAATATAGAAAGGTATAATACAATAAACAAAAAACAAATATAAAGAAAAATATAGTATTATCGTAGGATAATGGAATCAAATACGC---AGTATTTACAGAAAAGAGTCTTCGTTTATTGGGAAAGAATCAATATACTTTTAATG----------TTTTTT-----TTTTCATTTTA-AAATTTTTAAAA----ATTAAAGGG--------TATTCTTAAAGAAA---AGAGGTATTTCTTTTATTTTTACAATAGTTTTCTTTTGAAT----CCAATTTCAAGTTCGATTAGAAGGATAGAAAGG-----CGATGAGAATGGGAAAAGAAAACGAAAATATT-----TTTCATTAGTGCCCCTTTTTTGCAATTTTCTTATTATCCATATCCATTCATTTTTTTTTAGAATACTTTTTTTTGTAG------ACTAAAAAA-------TACAATAGTCAATATTCCTTATAATAGATATACTTAATTATATCATAAGAATCTTAAGATATATTTCGAATAGATAGAAATAGTAAATTTGAAT----TGAGACACTTATTCT------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ >Lolium_multiflorum TAAAACTAAATATAAAGAGGGTCTAAATACAAAATAAACGAAATAAAA-AGAGA---AAAAATACGTTACGAAATGCAGTAATTCTTCTTTATT-------CTTCT-----AATTGATTGCAATTAAACTCGGCTCAATC-TTTCTTTTTTAGAAAGATTGAGCCGAATAAAAATAGATCATGATACGATCATGAGACTTGACAAATCGAGATTAGTCTATTCTATAATATCTAGAATATATAACGGTATAATACAATAAAGAAA-------TACAAATAAAATCATAGTATTATCATATGATAATGGAATCAAATACACAACAGTATTTACAGAAAAAAGTCTTCATTTATTGGAAAA-AACTAATGGAGAATTAATGAAAAAAGACATAGTTTGAGCATACTCATCGTAGAGATGCTCAAAAGGATACTGATGGGAAGAATTATACTTTCATGGAAATCCAGCGCTATAAACTTCAATGCGGTAGACGTTTTGTTCCTAATTTTTCCGGACCAAACCTCCGACCCAACGATAGAATGAATTTTTTTTGCTATTCATAAAAAAAATCAAAAAGATGCAGAATCTCAATGCTACTTACTATATGCGTCCAAAGGAGTATTCGGAATAAT--ATTCTTCTATAACACCCATTCTTGCGCGGGGTCTTACTAACAGGACTTCGCTGCACGGGACGGGTCTTCGTCGAAAAACTAACTCCACCCGGCTTAGAGCCTTTTTGGGTGGTATATCGACTTAAAAAGTCTAAGAGGATAGGGTAGTATGGGATCCATATTAGGTAAGATAATTTGCCCTTTGATTTTGATTCAATATAGTATTTTTCCGCCTTTACCACGCATTATTGTATGCGCTTCTAGAGGAGTATATATACTAGAAGTAAATTCTAGCCGCTTTCTTTTGAATCCTAAAATTCGATTAGAAGGATAGAAAGGCCATGAGGGTGGGAAAAGAAAAATCAAATCTTTTTAATTAGTTCTCCTTTTTTGCAATTTTATTATCT-ATTCCTTTCGTTTTTTTACAAAATATTTTTTATAGAATACTAAAGTATTCTATAAAAAATATTTATTTTGCAAACTAAAAAATACAATAGTCAATATTCCTTATAATAGATATACTTAATTATATCATAAGAATCTTAAGATATTTTTTGAATAGATAGAAATAGTAAATTTGAATTGAGACACCTATTCT >Lolium_perenne TAAAACTAAATATAAAGAGGGTCTAAATACAAAATAAACGAAATAAAA-AGAGA---AAAAATACGTTACGAAATGCAGTAATTCTTCTTTATT-------CTTCT-----AATTGATTGCAATTAAACTCGGCTCAATC-TTTCTAAAAAAGAAAGATTGAGCCGAATAAAAATAGATCATGATACGATCATGAGACTTGACAAATCGAGATTAGTCTATTCTATAATATCTAGAATATATAACGGTATAATACAATAAAGAAA-------TACAAATAAAATCATAGTATTATCATATGATAATGGAATCAAATACACAACAGTATTTACAGAAAAAAGTCTTCATTTATTGGAAAA-AACTAATGGAGAATTAATGAAAAAAGACATAGTTTGAGCATACTCATCGTAGAGATGCTCAAAAGGATACTGATGGGAAGAATTATACTTTCATGGAAATCCAGCGCTATAAACTTCAATGCGGTAGACGTTTTGTTCCTAATTTTTCCGGACCAAACCTCCGACCCAACGATAGAATGAATTTTTTTTGCTATTCATAAAAAAAATCAAAAAGATGCAGAATCTCAATGCTACTTACTATATGCGTCCAAAGGAGTATTCGGAATAAT--ATTCTTCTATAACACCCATTCTTGCGCGGGGTCTTACTAACAGGACTTCGCTGCACGGGACGGGTCTTCGTCGAAAAACTAACTCCACCCGGCTTAGAGCCTTTTTGGGTGGTATATCGACTTAAAAAGTCTAAGAGGATAGGGTAGTATGGGATCCATATTAGGTAAGATAATTTGCCCTTTGATTTTGATTCAATATAGTCTTTTTCCGCCTTTACCACGCATTATTGTATGCGCTTCTATAGGAGTATATATACTAGAAGTAAATTCTAGCCGTTTTCTTTTGAATCCTAAAATTCGATTAGAAAGATAGAAAGGCCATGAGGGTGGGAAAATAAAAATCAAATCTTTTTAATTAGTTCTCCTTTTTTGCAATTTTATTATTTTATTCCTTTCGTTTTTTTAGAAAATATTTTTTATAGAATACTAAAGTATTCTATAAAAAATATTTTGTTTGCAAACTAAAAAATACAATAGTCAATATTCCTTATAATGGATATACTTAATTATATCATAAGAATCTTAAGATATTTTTTGAATAGATAGAAATAGTCAATTTGAATTGAGACACCTATTCT >psaI:ycf4 >outgroup AACGACGGGGCCAAATTTTATTAATGTATTTCCAGAATCATAATACGGATATTTTTTTGTGTAAGTAATATAATATGATAGGGTATGTAGCTCTTTCTACACACAAATGAAAAACATCTATG-----GATGCAGATATAGGCTACGAGCATAAATGCATGCATATGCGTAGCCGAGTATAGCGAGTTTTTTTTTTTTTGAATCCGCGAATTTTTTTTGAATAGAAAGTCAATGTATCTAACCAATTATTTCACAGGAGTACTAGGTACTGAGGGCTATTTCAGAATCAAAAAAAGTAAAGTCAAAATCATTTAGCTTATTCTCTCAATTTCAATTGACCGCTACTGGATTTAGTATATCTAAT >Lolium_multiflorum ---------------------------------------------------ATTTTTAGTGTAAGTAATATCATATGGTAGGGTATGTGGCTCTTTCTACCCACAAATGAAAAACCACTATGGAATGGATGCAGATATAGGCTACGAGCATAAATGCATGAATATGCAGAGCCGGGTATAGCGAGTTTTCTTTTAATTGAATCAACAAATATTTTTTGAATAGAAAGTCAATGTATCTAACCTATTATTTCACAGGAGTACTAGTTGCTGAAGACGATTTCAGAATCAAAAAAAG-AAAGTCAAA----TTTAGCTTATTCTCTCAATTTCAATCGACCACTGCTGAATTTAGTATATCTAAT >Lolium_perenne ---------------------------------------------------ATTTTTAGTGTAAGTAATATCATATGGTAGGGTATGTGGCTCTTTCTACCCACAAATGAAAAACCACTATGGAATGGATGCAGATATAGGCTACGAGCATAAATGCATGAATATGCAGAGCCGGGTATAGCGAGTTTTCTTTTAATTGAATCAACAAATATTTTTTGAATAGAAAGTCAATGTATCTAACCTATTATTTCACAGGAGTACTAGTTGCTGAAGACGATTTCAGAATCAAAAAAAG-AAAGTCAAA----TTTAGCTTATTCTCTCAATTTCAATCGACCACTGCTGAATTTAGTATATCTAAT >ycf4:cemA >outgroup --------------------------------------------------------------------------TACCAATTGCCATT--TTTTGCAATTGTAAGGGGATTTTTGAGTATTTATCTAAAGAAAGGAATAAACGAGGATAAGAGAAAATTGCTTTTA-----------TTTGTTTTGTCCAAGTGAGATATATGGCATAATATTCTTCCATTTTTATATAAAAGTCCTTTTTTTT----TATTTCTCTATTCCACTCCATTTAGATCTAAGAAAGAACCCAATACAATGAAATTCCACTAGTATACAAAAAGAGATATAGATACAAACACAAGGTCTCAAACCTTGTTATAGAATTTTTGCTTCAAAGAAA------TATCATATATATTCAGCGAATGAAATAGAGTCGGCGAATGAAGCGGATTCATTAACAACTCAATTTACAGATCAAAA >Lolium_multiflorum TACCCATTTTTTTTTGAACTGAATTGAATGAAGAATAATTGGAAGAAGAAAAGTTTTCTCAACATAGAGAGGAAGTCCCCTCGAAATTGGATTTGTTATTGTAAGGGTATTTTTAAGTATTTATCTAAAGAAAGGAACAAATGAGGATAAGAGAAAATTGTTTTTAATTTATTTTAATTTATTTTGTCCAAGTGAGATATATTCCATACTATTCTTCCATTTTCATCCGAAAGGTCTTTTTTTTATTCTATTTCACTATTTCACTCCATCTAGATCTAAGAAAGAACCCAAT-----GAAATTCCACTAATATACAAAAAAGAAGAGAAGAATAGATACAGGGTATAAAACCTTGCTATAGAGTTTTTGCTTCAAAGAAAAAGACATATCATATGGAGTCAGGGAATGAAATAGAGTCAGCGAATGAAGCGGGTTCATTAACAACTCAATTTACGGATCAAAA >Lolium_perenne TACCCATTTTTTTTTGAACTGAATTGAATGAAGAATAATTGGAAGAAGAAAAGTTTTCTCAACATAGAGAGGAAGTCCCCTCGAAATTGGATTTGTTATTGTAAGGGTATTTTTAAGTATTTATCTAAAGAAAGAAACAAATGAGGATAAGAGAAAATTGTTTTTAATTTATTTTAATTTATTTTGTCCAAGTGAGATATATTCCATACTATTCTTCCATTTTCATCCGAAAGGTCTTTTTTTTATTCTATTTCACTATTTCACTCCATCTAGATCTAAGAAAGAACCCAAT-----GAAATTCCACTAATATACAAAAAAGAAGAGAAGAATAGATACAGGGTATAAAACCTTGCTATAGAGTTTTTGCTTCAAAGAAAAAGACATATCATATGGAGTCAGGGAATGAAATAGAGTCAGCGAATGAAGCGGGTTCATTAACAACTCAATTTACGGATCAAAA >cemA:petA >outgroup CTCACTCA--TTGGATTTCCTAATATTAATCAAATTAGCATATTTCTTCCTTTAGTTTAGAAAGAAAGCCCTTTTCTCCTTTTTAGCAAAATTCT-----TTTCTACCTGC-----GTATTCATCATTCCAGTACAACTGTTGCAGGAGAATGACAACAGACTCGTGTATAGGGAACTAGATTAGTTTAGCTACCTATCCAATTTATTGTAGAAATTCCGGGATCCGCGATTGGAC >Lolium_multiflorum TTCATTCAATTTCCTGTTCCTGATATTAATCAAATTAGCAGCTTTCTT---------TAGAAAGAAAGCCCTTTTC--CATTTTAGCAAAATTCTTTCTATTTCTACCTGCTTAAGGTATTCATCATTCTAGTACAACTGTTGCAGTAGAATGACAACAGACTCGTGTATAGGGAACTA----ATATTAGCTACCTATCTAATTTATTGTAGAAATTCAGGGATCCGCGATTGGAC >Lolium_perenne TTCATTCAATTTCCTGTTCCTGATATTAATCAAATTAGCAGCTTTCTT---------TAGAAAGAAAGCCCTTTTC--CATTTTAGCAAAATTCTTTCTATTTCTACCTGCTTAAGGTATTCATCATTCTAGTACAACTGTTGCAGTAGAATGACAACAGACTCGTGTATAGGGAACTA----ATATTAGCTACCTATCTAATTTATTGTAGAAATTCAGGGATCCGCGATTGGAC >petA:psbJ >outgroup ---------------------------------------------------------------------------------------------TCCTGGGATTTCTTACCATCAAGTTAAAATAAAAAAAAAGCCTC---GATTTTTGGAATTCCTTATTTCTATCTCATGCAAAAAAAGAGGATC-----CAAGGCAGAGACGAGAACAATAAAAGGAAGAAGTCCTTTTAGAAGGAATTGCGCGTCTTCTTAATCCTTTATTGGGCACAAGAAAAAGGCAAAAAAGCCTTTTTCTTGTGTCGATTCTTCTTGTATCGAAGTCAATTCTTCTTGTATCCAAGTCAATTCTTCTTGTATCCAAGTAAGAATCTTTTTTCTTCTTATTTGTTTTGTCAAAGATTACTAT-TTATTCTTTATTCGGGTCTGCCTTTTGGAC------TTCCTTTGCTTAGGTTCGGGCGCGGTAGTGGGCAAACAGAGGGAAAGAAAGTATAGCGGGGGACAAATTTCTTGTGAGCAAATAGAATT------CTTTTTCAATTAAGTTCAACTTCGGACTTACAAAAATTTTGTTTTGTAAAAAAAATGTATAC-CTCCCATGGAAGGGTGGTTTTTATTTTTAGG-----CTAGTTGAGTAGTTTTTATTAAGGTTTTATTTGTTTATTACTCTAAACTAAATCAATGATTTGCAGGATACTTCCTTC---------ATGGAATA-------------------AAATCGCGTTATAACAATAAGAATTCTGCGGGCCCTTTCCGCTCTAATCAGATAAAGGGGGGTAAGGACCCGCTAAGTTCCTACTTTTTCATGTTTACAATCTGGATCCTCCGATTA >Lolium_multiflorum TTCCGGGATTTCTTACCATCAAGTTGGTAAAAAGCCTCAATTTATTGGCAATTGCTAGAATTATCTATGATCTATTTTAGATTGGAAATCCTTTTTTTGGTTAAACTTTTTTTTGTTTACGAGATCTTTTTTGCTTACGAGATGTCTGGAATTCCTCATTTCTATCTTATGCAAAAGAAGAGAATCGAATCCAAGGCAAAGGCGAGAACAATAAAAGGATTTCTTCCTTTTCGGAGGAATTGCAGGTCTTCTTAATCCTCTATTCGGCACAAGAAAAAGGCTTTTTTGCTTTTTTCTTGTGCCGATTCTTCTTGTATCAAAAT------------------------------------------AAGAATATTTTTGCTTCCTAATT----CGTCAAAGATTACTATGTTTTTCTTTATTCGGGTCTGTCTCTTAGATCTCTTTTTCTTTTGCTTAGGTTCAGGCGAGGTAGTGGACAAATT-------------TATTGTGA------------TTGTGAGCAAATAGAATTGCTTGACTTGTTCAATTAAGTTCAATTTCAAACTTACAAAAATTTTGCA----AAAAAAAACATAAACTCTTCCATTGAAGGGTGGTTTTTATTTTTAGGTTAGGCTAGTTGAGTAGTTTTGATTAAGGTTTTATTAGTTTATTACTGGAAACTAAATCAAAGATTTTCAGGATACCTCCTTCTAAGAGTGAATCGAATAGATTATA-------GATTAAAGTCGCGTTATAAGAGTAAGAATTCCGCGGGTCCTTTCCGCGCTAATCAGATAAAGGGGG-TAAGGACCCGCTAAGCTCCTACTTTTTCATGTTTACAATCTGGTCCCTCCGATTA >Lolium_perenne TTCCGGGATTTCTTACCATCAAGTTGGTAAAAAGCCTCAATTTATTGGCAATTGCTAGAATTATCTATGATCTATTTTAGATTGGAAATCCTTTTTTTGGTTAAACTTTTTTTTGTTTACGAGATCTTTTTTGCTTACGAGATGTCTGGAATTCCTCATTTCTATCTTATGCAAAAGAAGAGAATCGAATCCAAGGCAAAGGCGAGAACAATAAAAGGATTTCTTCCTTTTCGGAGGAATTGCAGGTCTTCTTAATCCTCTATTCGGCACAAGAAAAAGGCTTTTTTGCTTTTTTCTTGTGCCGATTCTTCTTGTATCAAAAT------------------------------------------AAGAATATTTTTGCTTCCTAATT----CGTCAAAGATTACTATGTTTTTCTTTATTCGGGTCTGTCTCTTAGATCTCTTTTTCTTTTGCTTAGGTTCAGGCGAGGTAGTGGACAAATT-------------TATTGTGA------------TTGTGAGCAAATAGAATTGCTTGACTTGTTCAATTAAGTTCAATTTCAAACTTACAAAAATTTTGCA----AAAAAAAACATAAACTCTTCCATTGAAGGGTGGTTTTTATTTTTAGGTTAGGCTAGTTGAGTAGTTTTGATTAAGGTTTTATTAGTTTATTACTCGAAACTAAATCAAAGATTTTCAGGATACCTCCTTCTAAGAGTGAATCGAATAGATTATATATTAAAGATTAAAGTCGCGTTATAAGAGTAAGAATTCCGCGGGTCCTTTCCGCGCTAATCAGATAAAGTGGG-TAAGGACCCGCTAAGCTCCTACTTTTTCATGTTTACAATCTGGTCCCTCCGATTA >psbJ:psbL >outgroup TCCCCTACTTTCCTCCACATTTTCTCAAGTGGTCATGCTAGAGACAAAAACAGTCATGGATAGTTATAAGGATGG-TATCCTTCCAAATGGGATAAGAGAATTCTTACTACTTTCTTTCTC----------------------------------------- >Lolium_multiflorum TCCCCTACTTTCCTCCACATTTTATCAAGTGGTCATGCTAGAGACAAAAACAGTCATGGATAGTTATAAGGACGGGTATCCTTCCAAATGGGATAAGAGAATTCTTATTACTATCTTTCTTTCTA------------------------------------- >Lolium_perenne TCCCCTACTTTCCTCCACATTTTATCAAGTGGTCATGCTAGAGACAAAAACAGTCATGGATAGTTATAAGGACGGGTATCCTTCCAAATGGGATAAGAGAATTCTTATTACTATCTTTCTTTCTATCAATTGAAGAAGTAATTGGAACTATCTTTCTTTCTA >psbE:petL >outgroup CTGAGCTCCCAAAATTTTTGTACATTCAAAAAAGGAATTGATTCCGTAAAAGATGGGATCCACCAGTAAATAGAAAATTACTGATATTTCATCCTTGTGAGATTGTCAATTTTGTACCAAAGGTGTATTTTGAGTATACCGAATTAGTATAGCTATCCTTCCTATGGCGCAGCAATCCTGTTTTGCTTGGTCCCGAAACAGAATTCTTTTTTTCTCTTCTTTGCTCCTTATCTATAGGAAAATGACATTTTATTGAAGGTATCCATAGAAC-CCCAGAATTTTTTG-GGTCCTACTTATTTTCATTGTCTTCGGAATAGTAGAATAATGAAATTTTGAATAGTGGCCAAGATCTTGGGAAAGCCTAAGTTAATGATCAATAAG-----ATAAAGAATTTAGGAAGGATATTCTCATATTGACGCAATACAAGGATAAGTATATGCAAAATCTATGCCTTTTTAGTTAAAAGTTTTATTCAAATCCAACCTTTCCCTTTAAGG--AATTTAATTGGTTAGCATAAAATAATATCTAATAAATAGAAA-ATGGA-ATAGTGGATACTCCGTTATGAAAGAAACGGAATACATTCTTTGAAGAATCAAGATTCGTAATCAATCCTTGTCTTGTTTGTTGGATTAGGTCTAACTTTCTTGACCAAACTGCAAGCAAG------CATGGAACATTAC-GAGAAGAACTTAATAAAAAA---AAAAGGATAATTGAAGTAACT-----TCGAATCAATTTTTGTTGGGGTTCAAAAAACGAATAAAAATAAATAAAAATAAAGTAAATTCAAGGAAGAG--TTCCTTTTTTCAGGGGGCCCTTCGGG----GGTCGTGGAATGCTTTTCTTCTCCTCTTATTCCATATGGAATACAATG---------------AATTAAAATAAGA--------------AGGAATAGGGGAATATTCGACCGTTTGCTCCAAAAGGAGGATGAAATCCATCCTCTTGAAAAAGAAATAATCCGAAATAGAAAGAACTTTTTTA-----GAATTAAATTCTTTATTTATCTTTTAT-----TCCAAAATTCCCCCGAAAATCCTATTTCATTTTT-CAATGGGATTAGATGATCTAGCTCTTAATATTATTAGTTTACTTAACTGACAGATTCCACAACAAATATCTTGATTCGGAATTAGAGACTCATGTCCCGTCTGATGAATCGATTTTCTTTTACACTTTTGTTTTTTAGTAT--------TATCTAAAATAACC---GATGAATTATGAATTTTCCATAACTTAGGTAAGTGCTTTACCAACATATGTAGTGTAGTAAAAAAATAAATGGAATTTAACCCCTTC >Lolium_multiflorum CTGAGCTCCCAAAATTTTTGTACATTCAAAAAAGGAATTGATTCTGTAAAAGATGGGATCAACCAGTAAATACAAAATTACTGATATTTCATCCTTGTGAGATTGTCAATTTTGTACCAAAGGTGTATTTTGATTATACCAAATTAGTATAGCTATCCTTCCTATGGCACAGCAATCCGGTTTTGCTTGGTTCCGAAACATAATTCCTTTTTTATCGTTTTTGTTCTTTGTCTATAGGTAAGCTATATGTTATTCACGGCATCAATAGAAAACCCACCATTTTTGGAGGTCCTACTTATTTTCATTGGCTTCGGAATAGTAGAATAAT-----TCGGAATAGTGGCCAAAATCTTGGGAAAATCTAAGTTAATGATCAATAGGTTTGGATAAAGAATTTAGGAAGGATATTCTCATACTGACACAATACAAGGACAAGTATATGCGAAATCTATCCTTTTTTAGTTAAAAGTTTTCTTCCAATCCAATTTTTCCCTTTAAAGTTAAAGAATTTCATTAGT-TAGCATAATATCTAATAAATAGAAATATAGATATAGTAGATAATCTGGTATAAAAGAA--GGAAAACATTCTTTGAAGAATCAAGATTCATAATTAATCCTTGTCTTGTTTGTTGGATTAGGTCTAACTTTCTTGAACAAACTGCGAGCGTGGAACTTTATGAGATGAAATAGGGAAAGACAGAAGATAGAACTTAAAAGGATAATTGAAGTGACTCGTCTTCGAATCCACTTTGGTTGGAGTTCGAAAAAGGAATAAAAATAAA----------GTAAATTCAAGGAAGAGCTTTCTTTTTTTTAAGGGTCCCCCAGGGGGGAGGTCGTGGAATGCTTTTCTTCTCCTCTTATTCCATATGGAATACAACCCAGTTAAAATAAGACAGTTAAAATAAGACAGTTAAAATAAGAAGGAATAGGGGAATATTTGACCCTTCACTCCAAAAAGATGGT---------CCTATTGAAAAAGAAATAATCCAAAATAGAAATAAGTTTTTTTTTT-CAAATTCAATTGTTTATTTATCTCTTATATTATTCCAAAATTCACCTGAAAATCGAATTCCATTTTTTCAACGGGATT-------CTTACTCA-------------------AATTGAAAAATTCTATAACAA-TCTCTTGATTCGGAATTAGGGACTCGTGTATCATCTGATGAATCTACTTTCTTTTACACTTCCATATCTCACTCTATCTTTTTTTTT-AGTATTATCTAAAATAACTGATGAATTTTCCATAACTTAGGTAAGTGCTTTACCAACATATGTAGT-------AAAAAAAAAAGGAATTTAACCCTTTC >Lolium_perenne CTGAGCTCCCAAAATTTTTGTACATTCAAAAAAGGAATTGATTCTGTAAAAGATGGGATCAACCAGTAAATACAAAATTACTGATATTTCATCCTTGTGAGATTGTCAATTTTGTACCAAAGGTGTATTTTGATTATACCAAATTAGTATAGCTATCCTTCCTATGGCACAGCAATCCGGTTTTGCTTGGTTCCGAAACATAATTCCTTTTTTATCGTTTTTGTTCTTTGTCTATAGGTAAGCTATATGTTATTCACGGCATCAATAGAAAACCCACCATTTTTGGAGGTCCTACTTATTTTCATTGGCTTCGGAATAGTAGAATAAT-----TCGGAATAGTGGCCAAAATCTTGGGAAAATCTAAGTTAATGATCAATAGGTTTGGATAAAGAATTTAGGAAGGATATTCTCATACTGACACAATACAAGGACAAGTATATGCGAAATCTATCCTTTTTTAGTTAAAAGTTTTCTTCCAATCCAATTTTTCCCTTTAAAGTTAAAGAATTTCATTAGT-TAGCATAATATCTAATAAATAGAAATATAGATATAGTAGATAATCTGGTATAAAAGAA--GGAAAACATTCTTTGAAGAATCAAGATTCATAATTAATCCTTGTCTTGTTTGTTGGATTAGGTCTAACTTTCTTGAACAAACTGCGAGCGTGGAACTTTATGAGATGAAATAGGGAAAGACAGAAGATAGAACTTAAAAGGATAATTGAAGTGACTCGTCTTCGAATCCACTTTGGTTGGAGTTCGAAAAAGGAATAAAAATAAA----------GTAAATTCAAGGAAGAGCTTTCTTTTTTTTAAGGGTCCCCCAGGGGGGAGGTCGTGGAATGCTTTTCTTCTCCTCTTATTCCATATGGAATACAACCCAGTTAAAATAAGACAGTTAAAATAAGA--------------AGGAATAGGGGAATATTTGACCCTTCACTCCAAAAAGATGGT---------CCTATTGAAAAAGAAATAATCCAAAATAGAAATAAGTTTTTTTTTTTCAAATTCAATTGTTTATTTATCTCTTATATTATTCCAAAATTCACCTGAAAATCGAATTCCATTTTTTCAACGGGATT-------CTTACTCA-------------------AATTGAAAAATTCTATAACAA-TCTCTTGATTCGGAATTAGGGACTCGTGTATCATCTGATGAATCTACTTTCTTTTACACTTCCATATCTCACTCTATCTTTTTTTTTTAGTATTATCTAAAATAACTGATGAATTTTCCATAACTTAGGTAAGTGCTTTACCAACATATGTAGT-------AAAAAAAAAAGGAATTTAACCCTTTC >petL:petG >outgroup ATGAATTGAATGAATTAGTCAGAAAAGAAGAATCTTTCTTTTGTATTCCTGGTATTCTA-GACTCTTTTCCACACTAATTACCAATTCTTTTCTTGGTCATTGAGATTCGTGCATAATTTAGACTATTATTTAGAGATAGATCGTACCTCTTTTTTTTTATCCCCTCGAAGAAATCGAA >Lolium_multiflorum -----TTGACTGAATAAGTCAGAAAAGAAAAATCTTTCTTTTAGATTCCTGGTATTCTATGACTCTTTTCCACACTAATTACGAATTCTTTTCTTGGTCATTGAGATTCGTGGATAATTTAGAGTACTATTTAGGGATAGATAGTACCCATTTTTTT--ATCCCCTCGAACAAATCGAA >Lolium_perenne -----TTGACTGAATAAGTCAGAAAAGAAAAATCTTTCTTTTAGATTCCTGGTATTCTACGACTCTTTTCCACACTAATTACGAATTCTTTTCTTGGTCATTGAGATTCGTGGATAATTTAGAGTACTATTTAGGGATAGATAGTACCCATTTTTTT--ATCCCCTCGAACAAATCGAA >petG:trnW-CCA >outgroup TTAGTAATATTTCTTTTTTGATTGACCTCCTCTCTGGTCTGGAGGAGGTCAAATT----TTGCAATTCTACTTTGTTTTTTTTTAAGTTATTTTACTCTGTTTCGACATAAGATATATGGAAT >Lolium_multiflorum TGAGTAATTTTTATTTTTTTATTGACCTCCTCCAGACCAGAGAGGAGGTCAAATTCGAGTTGCAAGTCAACTTTGTTTTGGT--AAGTTATTTTACTCTGCTTCGACATAAGATAGATGGAAT >Lolium_perenne TGAGTAATTTTTATTTTTTTATTGACCTCCTCCAGACCAGAGAGGAGGTCAAATTCGAGTTGCAAGTCAACTTTGTTTTGGT--AAGTTATTTTACTCTGCTTCGACATAAGATAGATGGAAT >trnW-CCA:trnP-UGG >outgroup TTCAAAAAAAAAAAAAAGAAAATCCTTTTCTACTCCCAAAGTGTCTCACGTCCGTATGAGTATCCACAAATTCAAGTTATACCCACTTTA-----ATCGATCTCCCCGCGACTGCCCATAAAGAAGAGA-GAATTAATAGG >Lolium_multiflorum -TTCATTTATTCAAAAAGAAAATATTTTTCTATTTCTAACATATCTCACGTACGTAT-AGTCTCCACAAATTCAAGTTATACCCACTTTACTTTAATCGACTTCTTTTCTACTGCCCATAAAGAAGAAATGAAGTAATAGG >Lolium_perenne -TTCATTTATTCAAAAAGAAAATATTTTTCTATTTCTAACATATCTCACGTACGTAT-AGTCTCCACAAATTCAAGTTATACCCACTTTACTTTAATCGACTTCTTTTCTACTGCCCATAAAGAAGAAATGAAGTAATAGG >trnP-UGG:psaJ >outgroup -TCAAAATTGCTGTACAATGCCATTGTACACAATTCCTTTCTTGTTTTCCACATCGTAATTTTCTTGT-ATTTCTATATTTATATGGAACTTTCTTGTCATTTCTTGTTTTTAGTCTCATATAATCAAGGAAGGGGATACATCTAAAATCCAGTCGAATTTCACCTAGGATCTTGGGCAAGAGTATCTGATCATAT--ATGTATTCCAATACGGAAGGAGGATTTTCA---------------------------------------------------------------------------------------------------------------- >Lolium_multiflorum -TCCAAATTGTTATACAATGCCATTGTACACAATTCCTGTCTTCTTTTCCACATCGTAATTTTATTCTTATTTCTCTATCTATATAGAACCCTCCTGTCATTTCTTCTTTTTGGTCTCAGATAATTAAGGAATTATATACATCTAAAATCCAATAGAATTTAGCCTATAA----AAGAAAGATTGCTTTTCCTTGGTAATGTATAGGAAGAAGGGGTCATCTTTTTCTTTTTTAGGGATAGGCAAATTTCGTCTATATGGTTCATTTTATATATAGCATAACAATCTCGGGCAAGAGTTTCTGATCATATATGTATTTCAACAAGGAAGGAGGATTTTCA >Lolium_perenne TTCCAAATTGTTATACAATGCCATTGTACACAATTCCTGTCTTCTTTTCCACATCGTAATTTTATTCTTATTTCTCTATCTATATAGAACCCTCCTGTCATTTCTTCTTTTTGGTCTCAGATAATTAAGGAATTATATACATCTAAAATCCAATAGAATTTAGCCTATAA----AAGAAAGATTGCTTTTCCTTGGTAATGTATAGGAAGAAGGGGTCATCTTTTTCTTTTTTAGGGATAGGCAAATTTCGTCTATATGGTTCATTTTATATATAGCATAACAATCTCGGGCAAGAGTTTCTGATCATATATGTATTTCAACAAGGAAGGAGGATTTTCA >psaJ:rpl33 >outgroup ------TATTCCTATGCGAGAGATAGAATTCTTCGTGACATGACGAAAATTTTCCCTTTTTGAATTCTTT-TTTAGTATATGAAGCAAAAAGAAAGAAAAGATGGATAAGGATTGTATTCTTTAATTAT------TTCTCTATGTTTTTTATT-----------ACTTAATTTAC------GAATTTCCAAAATTTTTTATTCT------ATTGGA-------------TTGGATTCGTTAGAGAATTCAAAGAATTACAA--CAAAATCTTTAGAAATCGCAT--------TTTTTGTTAGGAACTTCTATAGATTTTATT-CTTCTTCTTTGGATCCAAAATAGAAGAA--------------------------------TAAAAGAATAGGTATAAGAATTAAGTTAAGTCGATCCAAAACCAAAAAGGAGGTTT >Lolium_multiflorum TCTAGTTATTGCTATGCGAGGAATAGAATTCTTTGTGACATGCCAAAATTTGACCCTTTTCAATCCTTTTACTTAGTATCGGAAGGAAAAAGAAATAAAAGATGAATTGGG-TTGAACCTCAGAGTCATGAAAAATTTGGTAAATTCTATTTTGGAAAAAAGAAATTCAATTTAAATAAAGGGGTATCCAAGCTAAACCAGGCCTCAGAAATCAGAGCATAGAAAAAAGCTGGGCTGGCTAATTAAATGAAAGGATTTCGAAGCTAAATCTTTGCTAATTCGACAAGGATTGTATTCTTTAATTATTTCTTTATTTTTTATTACTTAATTTAAGAATGAAAAATAAATTATTCTAATGGATTTTATTCTTCTTCTTCGGATTCTAAATAGAAGAATAAAAGAATTAAGTTAAGTCAATCCAAAAA-GAAAAGGAGGTTC >Lolium_perenne ------TATTGCTATGCGAGGAATAGAATTCTTTGTGACATGCCCAAATTTGACCCTTTTCAATCCTTTTACTTAGTATCGGAAGGAAAAAGAAATAAAAGATGAATTGGG-TTGAACCTCAGAGTCATGAAAAATTTGGTAAATTATATTTTGGAAAAAAGAAATTCAATTTAAATAAAGGGGTATCCAAGCTAAACCAGGCCTCAGAAATCAGAGCATAGAAAAAAGCTGGGCTGGCTAATTAAATGAAAGGATTTCGAAGCTAAATCTTTGCTAATTCGACAAGGATTGTATTCTTTAATTATTTCTTTATTTTTTATTACTTAATTTAAGAATGAAAAATAAATTATTCTAATGGATTTTATTCTTCTTCTTCGGATTCTAAATAGAAGAATAAAAGAATTAAGTTAAGTCAATCCAAAAA-GAAAAGGAGGTTC >rpl33:rps18 >outgroup AGTATCGCGTGTTCGTTTTTTACAAAGAACAGAAAGAGTAAGAACTTCTTATTAA----------ATATATGGAACATAGATAGAA-----------TACAAAATGAAAATCAACCCATCTGATTTTAGGTAGATATTATTTCATATGTATAGAGGTTTTTTTTATATATTTAGTTTATTTTCTATTTTTATTATATAGTATATGAATCAAATAATATATGGACTAAAGAAAGACTACTTCTTCTGGATCTAAAATTAATAAAATAAAGAATTCTGGATCTAAAATTAATAAAATAAAGAAATCCATTTTTCTTTTTTCAATTTTTTAAATAACGAATAAATC >Lolium_multiflorum AACATCATGTGTTCTATTTTTACAAAGAACAAAAAGAGTAAGAACTTCATATTTATAAGAACTTCATATTTAATATATAAATAAAAAAAAATTATAGTATAAAATACAAATCAACTCATCTGATTTTCAGTAGATATTATTTCATATGTATAGAGAGTATTCATATAC--------TATAATATGAATTAAATA---AGATTATGAATTAAATAAGATATGGATCAAAGAAAGACTACTTCTTCTGGATACTAAATTAATAAAATAAAGAA-----------------ATGAA----------------TTTTTTTTTCAATTTT--AAATAAGGAATAAATA >Lolium_perenne AACATCATGTGTTCTATTTTTACAAAGAACAAAAAGAGTAAGAACTTCATATTTATAAGAACTTCATATTTAATATATAAATAAAAAAAAATTATAGTATAAAATACAAATCAACTCATCTGATTTTCAGTAGATATTATTTCATATGTATAGAGAGTATTCATATAC--------TATAATATGAATTAAATA---AGATTATGAATTAAATAAGATATGGATCAAAGAAAGACTACTTCTTCTGGATACTAAATTAATAAAATAAAGAA-----------------ATGAA----------------TTTTTTTTTCAATTTT--AAATAAGGAATAAATA >rps18:rpl20 >outgroup GTTTTATTCGAAAGGGTCAGATTCATATATAAAGAAAGTAATCCAGTTTTGATTCTTGTGTTTGTTATAAGAAAGAAACAGGGAAAAAATAAATAGTTTTTTTATTTATTGCAA-CATGCTCGTTGATTCCTACCACTTAATCTTAATTTATTGTATCTTCCCGGAGTTCCCTCTCCGGGAATTCGGGTTTAATTATTCCTGTATATTACTTT--TTTATCCT- >Lolium_multiflorum -------------------------------------------------------------GTTTTATTCGAAAGGGCCGGACCAGACCTATATA--TATTATAACGAAAGTAATCCAGCTCGTTGATTCCTACCACTTAATCTTAATTTATTGTATCTTCCCGGAGTTCCCTCTCCGGGAATTCGGTTTTTATTATTCCAGTATAATACTTTAATTTATCCTT >Lolium_perenne -------------------------------------------------------------GTTTTATTCGAAAGGGCCGGACCAGACCTATATA--TATTATAACGAAAGTAATCCAGCTCGTTGATTCCTACCACTTAATCTTAATTTATTGTATCTTCCCGGAGTTCCCTCTCCGGGAATTCGGTTTTTATTATTCCAGTATAATACTTTAATTTATCCTT >rpl20:clpP >outgroup GAATCAAATTAACCTTAATGAATAACTAATGATTTTTCTTCTTTTAATCCTCTTTTTTCCCATTAATAACAAAACGGATTATTCCGATATATAAAATATTAATCCCAATGGCTTTTGCTACTATAACCTTCCCAACCACGATTTTTTATTCTATTCTCTTCAGTTATTTCGCATAGAAATAACAAATT--------CTAACGATACTAAAAAAA-CAGTGGGTTCCATCGTTTCTACGGTTCCCTTTTAAACGGTGAGGCCCTCTCTATACACCGGAGCCCCTTCTTTCATTTCATCAAAAGGTATTGTGAACTTGTATAGTTCACATTCTTTGGCTCTGGCTCTACCCATCCATTATAGAGTAAATAGCTCTTTTCACAATAAGAGTTATTCATACAGTGACGGTATTTAATTATGAAAGTTGGCTAAGTAGCTGACCCT-TTAGTCCGTTCTTTTAAGATAAAGGAGCATAAACCTTTTTCTTTTTTTTACTATTTCCTCCGCTTAATGGATAACCATTTGCTACCAATGGGGGAATTGCTTCTTCCAATTCAAATCTAGATGATTGGATTTGCACCAAAGGAAACCATAAATTCCATATACCATAGAAATCAAAGATAGAGCTTCTCTATCCTATTCATTGGTACCGATCATGGATACTTCAAAAATTTTATTATTTGTTTGAACTCATGACCTAAACGAGTCGCACATACACCCTAGCACATGTTCCTCGACGCTGAGGACATCCCTTAAGCGCGGCCGATTTTGTAGCATTTCGTATTGGCTGTCTTGCATTTCTAATAAGTTGTTTAACCGTTGGCATGTCGTATGTATATAGAAAAAAA-GGATTGGTTTAGATCGATCTTAACCTAACGATTCATCATCATGAAGTATTTCTATTTTCTATAAAATAGCCTAAAACCCGAATTTAGGTTTGAAATAAATTTACAAGAAATCCAGCCA >Lolium_multiflorum GAATCAAATTAACCTTAATGAATAACTAATTATTTATCTTCTTTTAGCCATTTTTTTTTC-ATTAATAAAAAAACTAATTATTCCGATATATAAAATATGAATTCCAATGGCTTTTGCTATAGTAACCTTCCCAACCACAATTTTTTATTCCACTCTGTTCAGTTATTTCTATGCGAAATAACAAATTAATTATAACGAACGATACTAAAAAAAATAGTGGGTTCCATCGTTTCTATGGTTCCCTTTTGAACGGTAAGGCCCTCTCTATACACCGGAGCTCTTTCTTTCATT-----AAAAGGTATTGTGAACTTGTATAGTCCACATTCTTTGGCTCT------ACCTATCCATTATAGAGTAAATCACTCTTTTCACAATAAGAGTTATCCATACAGTGACGGTATTTAATTATGAAAGTTGGCTAAGTAGCTGACCCTGTTAGTCCGTTCTTTTTAGATAAAGGAGCATAAGCCTTTTTCTTTTTATTACTATTTCCTCCGCTTAATGGATAACCATTTGCTACCAATGGGGGAATTGCTTCTT--ATTTCCAATTTAGATAATTGGATTTGCACCAAGGGAAACCAGAAATTCCATATACCATAGAAATTCAGGATAGAAAAGCTATATCCTATTCATTGGTAGTAATCATGGATACTTCCAAATTTTTTTTATTTGTTTGAAGTCATGATCTGAACGAGTCGCACATACACCCTAGCACATGTTCCTCGACGCTGAGGGCATCCTTTAAGCGCGGCCGTTTTTCTAGCATTTCGTATTGGCTGTCTTGCGTTTCTAATAAGTTGTTTAACCGTCGGCATGTTGTATGTGTATAGAAAAAAATGGATTGGTTTAGATCCATCTTAACCTGATGATTGATCATCATGAAGTCTTTCTATTTTCTATTAAATCGAATAAAACTCGAATTTGGGTCTGAAATAACTTTACAAGAAATCTGGACA >Lolium_perenne GAATCAAATTAACCTTAATGAATAACTAATTATTTATCTTCTTTTAGCCATTTTTTTTTC-ATTAATAAAAAAACTAATTATTCCGATATATAAAATATGAATTCCAATGGCTTTTGCTATAGTAACCTTCCCAACCACAATTTTTTATTCCACTCTGTTCAGTTATTTCTATGCGAAATAACAAATTAATTATAACGAACGATACTAAAAAAAATAGTGGGTTCCATCGTTTCTATGGTTCCCTTTTGAACGGTAAGGCCCTCTCTATACACCGGAGCTCTTTCTTTCATT-----AAAAGGTATTGTGAACTTGTATAGTCCACATTCTTTGGCTCT------ACCTATCCATTATAGAGTAAATCACTCTTTTCACAATAAGAGTTATCCATACAGTGACGGTATTTAATTATGAAAGTTGGCTAAGTAGCTGACCCTGTTAGTCCGTTCTTTTTAGATAAAGGAGCATAAGCCTTTTTCTTTTTATTACTATTTCCTCCGCTTAATGGATAACCATTTGCTACCAATGGGGGAATTGCTTCTT--ATTTCCAATTTAGATAATTGGATTTGCACCAAGGGAAACCAGAAATTCCATATACCATAGAAATTCAGGATAGAAAAGCTATATCCTATTCATTGGTAGTAATCATGGATACTTCCAAATTTTTTTTATTTGTTTGAAGTCATGATCTGAACGAGTCGCACATACACCCTAGCACATGTTCCTCGACGCTGAGGGCATCCTTTAAGCGCGGCCGTTTTTCTAGCATTTCGTATTGGCTGTCTTGCGTTTCTAATAAGTTGTTTAACCGTCGGCATGTTGTATGTGTATAGAAAAAAATGGATTGGTTTAGATCCATCTTAACCTGATGATTGATCATCATGAAGTCTTTCTATTTTCTATTAAATCGAATAAAACTCGAATTTGGGTCTGAAATAACTTTACAAGAAATCTGGACA >clpP:psbB >outgroup -TTAGATTAATATTATTAAATTTAAGTAAGAAAACTACACTTTAATATGGAAACGTAAGAATGGAAGAGAAAGAAAGAATCCACAGTTTATTATCTTCATTTTT-------TTCTTATTCTATAAGAATACTATGGATTCTATTAAT------------------------ACATAGATTAAAATAATACATAGATTGAAAGATTATACATATAAGGAAGGTAAGACAGATTGAATAAAGAAAAAGGAATCCGTGATTCGAATGATAAACAAAGAGGGATTAAGGATCTATTCTTCGTTTTT-CCAAATAGCCCAAGTTACCCATTGCATATTGGTGCTTATCGAGTATAGAATAGATCTGCTTCTCTTTCTTCTTACAAACGGAATTGGCTTCTTATTTTTAATGGAATGAAATAAATATTCACGCTTTCTGACATAGAATCCCCTAGAAGGGTTAGGTACATAGGATATGTATGGATAGTCTTTTCCAATGCGATAAAATAAAGCGACATTGTGTCTATTTTTCTTTGCTAAAGGGGTATTTCC >Lolium_multiflorum TTTAGATTAATATTATTAAATTTAAGTAAGAAAACTACACTTTAATATGGAAACATAAGAATGGAAGAGAAAGAA----TCCACAGTTTATTGTCTTCATTTTTATTTTTATTCTTATTCTATATGAATACTATAGATTCTATTAATATGAATAGTATAGATTATATTAATACGTAGATTGAAATAATACATAGATTGAAAGATTATACCTATAAAGAAAGCAAGACATATTAAATAAA-AAAAAGGAATAGGCGATTCGAATAATAAACAAGGGGGGGT-AGGGATCTATTCTTCGTTTTTTCCAAATTGGGCAAGTTACCCATTGCATATTGGCACTTATCGAGTATAGAATAGATCTGCTTCTCTTTCTTCTTATGAACAGAATGGGCTTCTTATTTTTAATGGAATGAAATAAATATTCACGCTTTCTGACACAGAATTCCCTAGAAGGGTTAGGTACATAGGATATG----GATAGTCTTTTCCAATGCGATAAAATAAAGCGACATCGTGTCTATTTTTCTTTGCTAAAGGGGTATTTCC >Lolium_perenne TTTAGATTAATATTATTAAATTTAAGTAAGAAAACTACACTTTAATATGGAAACATAAGAATGGAAAAGAAAGAA----TCCACAGTTTATTGTCTTCATTTTTATTTTTATTCTTATTCTATATGAATACTATAGATTCTATTAATATGAATAGTATAGATTATATTAATACGTAGATTGAAATAATACATAGATTGAAAGATTATACCTATAAAGAAAGCAAGACATATTAAATAAA-AAAAAGGAATAGGCGATTCGAATAATAAACAAGGAGGGGT-AGGGATCTATTCTTCGTTTTTTCCAAATTGGGCAAGTTACCCATTGCATATTGGCACTTATCGAGTATAGAATAGATCTGCTTCTCTTTCTTCTTATGAACAGAATGGGCTTCTTATTTTTAATGGAATGAAATAAATATTCACGCTTTCTGACACAGAATTCCCTAGAAGGGTTAGGTACATAGGATATG----GATAGTCTTTTCCAATGCGATAAAATAAAGCGACATCGTGTCTATTTTTCTTTGCTAAAGGGGTATTTCC >psbB:psbT >outgroup ACCACATTGCTATGGTATCTTTCACCTCTCTTTTTTGACATGA----------GAAACATCTCCTGTCCTTTCTTTGACTCTTTTTCTTTTTTTATATGGGAAATGATCCCAAATGATAAGTGAATAGGTGTGGAAGTTATAATTGTAAATAAACCAGGATCGAATCT >Lolium_multiflorum -ACACATTGTTATGGTATCTTTGACCTCTCTTTTTTGATTTGACATGGGAAACAAAACAGCTCCCATCCTTTCTTTGACTCTTTTTCTTTCTTTATATGGGAAATTCTCCCAAATGACAAATGAATAGGTGTGGAAGTTATAATTGTAAATAAACCACGATCGAATCT >Lolium_perenne -ACACATTGTTATGGTATCTTTGACCTCTCTTTTTTGATTTGACATGGGAAACAAAACAGCTCCCATCCTTTCTTTGACTCTTTTTCTTTCTTTATATGGGAAATTCTCCCAAATGACAAATGAATAGGTGTGGAAGTTATAATTGTAAATAAACCACGATCGAATCT >psbN:psbH >outgroup TTTATAGAATTTCAAGATTACAATGGATCTATGAAAAGATCGTGTATTTACAACTACAACGGAATAGTATACAAAGTCAACACCAATGATTAAATGGAATTT >Lolium_multiflorum TTTATAGAATTTCAAGATTACAATGGATCTACGAAAAGATCGTGTATTTACAACTACAACGGAATAGTATACAAAGTCAACACCAATGATGAAATAGAATTT >Lolium_perenne TTTATAGAATTTCAAGATTACAATGGATCTACGAAAAGATCGTGTATTTACAACTACAACGGAATAGTATACAAAGTCAACACCAATGATGAAATAGAATTT >psbH:petB >outgroup TTTCTACTAACTAAAACTATGACTTCATAGTTTTTCCATCCAAAAAAAGCCTTTCTACTTTAAGCTCCACATTTCTAGACATTCTGGTAGTTCGACCGTGGATTTTTTT-GTTTCGGTATCTCTGGAAT >Lolium_multiflorum TTTCTACTAACTAAAATCAGGAAGTCATAGTTTTTCTATCCAAAAAA-GCCTTTCCAGTTTAAGCTCTACATTTCTAGACATTATGGTAGTTCGACCGCGGATTTTTTTTGTTTCGGTATCTCTGGAAT >Lolium_perenne TTTCTACTAACTAAAATCAGGAAGTCATAGTTTTTCTATCCAAAAAA-GCCTTTCCAGTTTAAGCTCTACATTTCTAGACATTATGGTAGTTCGACCGCGGATTTTTTTTGTTTCGGTATCTCTGGAAT >petB:petD >outgroup GAAGGCATATCATAGAGAATTATAATTCTCAT--ATATCATATGGGGTAGGTTGTGGTATTTCATTGCTACAAACATGGGTTATTGTAAAATAAGACATGTCATTTGGATACTTCTCTTCAACTTCGAAGTATTTTGATACAA------ATAGTTGAAGTTAATTTTACAAAAGAAAATAAGGCGGATT >Lolium_multiflorum GAAGGCATATCATAAAGAATTAAAATTATCATTTATATAATATAGGGTAGGTTGTGGTATTTCATTGCTACAAACATGGGTTATTGTAAAATAACACATGTCATTTGGATACTTCTTTTCAACTCCGAAGTATTTTGATACAATACAACATAGTTGAAGTTAATTTTACGAAATAAAAAAAGGCGGATT >Lolium_perenne GAAGGCATATCATAAAGAATTAAAATTATCATTTATATAATATAGGGTAGGTTGTGGTATTTCATTGCTACAAACATGGGTTATTGTAAAATAACACATGTCATTTGGATACTTCTTTTCAACTCCGAAGTATTTTGATACAATACAACATAGTTGAAGTTAATTTTACGAAATAAAAAAAGGCGGATT >petD:rpoA >outgroup GTAGGGACTTTTCGAGTTGATTCATTCAACCGCGAAGTCCCCTGCATGGGTATCTAGGAAATAGTTA-TTCCAAGTGAATCTTCCCTAGATACCTAAAATCTATTTTATTATGATCCATTTCGCGAAAATATAGATTGTGCCAAAGATGCAAAATTGCTTTCTTTTTT-CTTTTTATTCTAACTC-AAAAAAGAAGAAGAGGAAAAAATTGCAATGGAT >Lolium_multiflorum ----------TATTTTTTGATTTATTCAACCGTAAAGTACCGTGCATAGGTATCTAGGAAATAGTTACTTCCAAGTGAATCTTCCCTAGATACCTAAAATCCATTTTATTATGATCCATTTCGCGAAAATATAGATTGTGCCAAAGATGCAAAATTGTTTTCTTTTTTTCTTTTTATTCTAACTCGAAAAAAGAAGAAGAATAAAAAATTGCAATGGAT >Lolium_perenne ----------TATTTTTTGATTTATTCAACCGTAAAGTACCGTGCATAGGTATCTAGGAAATAGTTACTTCCAAGTGAATCTTCCCTAGATACCTAAAATCCATTTTATTATGATCCATTTCGCGAAAATATAGATTGTGCCAAAGATGCAAAATTGTTTTCTTTTTTTCTTTTTATTCTAACTCGAAAAAAGAAGAAGAATAAAAAATTGCAATGGAT >rps11:rpl36 >outgroup TTTTATTATCTCATAAATATGAGTTAGAAATAACAA-AAAGAAAAAAAGATACAAAGATATCTGTTTCAGGTTAAAATATATCCTTTACTTTAATT---TTAA-----------TGGAATTTGGGCATTTCCGCGGGTACTTT--------TTTTACTTT--TTAGAAAG-AAAAGCTCCTTTTTCGAAAGA >Lolium_multiflorum TTTTATTATCTCATAAATATGAGTTAGAAATAACAATAAAGAAAAAA-GATACAACGATATCTGTTTTAGGGTAAAATATACCCTTTACTTTAATTATTTCAAATTATTTTATTTGGAATTTGACCATTTCCACAGGTACTTTAGGTACTTTTTTTCTTTATTTAGAAAGTATAAAGTTCTTTTTCGAAAGA >Lolium_perenne TTTTATTATCTCATAAATATGAGTTAGAAATAACAATAAAGAAAAAAAGATACAAAGATATCCGTTTCAGGGTAAAATATACCCTTTACTTTAATTATTTCAAATTATTTTATTTGGAATTTGACCATTTCCACAGGTACTTTAGGTACTTTTTTTCTTTATTTAGAAAGTATAAAGTTCTTTTTCGAAAGA >rpl36:infA >outgroup TATAGGTATTCCTTTCTTAAACTATGAATCTATTCTTTTGGAAAAAATAAGTCTCTTCACTTTAATTTTTAAACTTGGAAATTATTACCCTGGAAAAAC--- >Lolium_multiflorum TTTCCGTAT-CCTTTCTTAAACTATGAATCTAATATTTTTGAAAAAATAAGTCTCTTCGCTTTAATTTTTGAACTTC-AATTTATTACCCTAGAAAAAAGAC >Lolium_perenne TTTCCGTAT-CCTTTCTTAAACTATGAATCTAATATTTTTGAAAAAATAAGTCTCTTCGCTTTAATTTTTGAACTTC-AATTTATTACCCTAGAAAAAAGAC >infA:rps8 >outgroup ----TTTTTTCTCCTATTTTTCTATTTTTATTTTCAAAATAGAAAGTTCGAGATAGAATTCGGGTACTATGGGGGGGGCCA >Lolium_multiflorum TTTATTTTTTCTCCTATTTTTCCATTTTTATTTTCAAAATAGGAAGGTCCAGATAGAATTCGGGTACTATAGCCACAGCGA >Lolium_perenne TTTATTTTTTCTCCTATTTTTCCATTTTTATTTTCAAAATAGGAAGGTCCAGATAGAATTCGGGTACTATAGCCACAGCGA >rps8:rpl14 >outgroup AAACTCTAATTCTAGGTTCCTCCTAATTTTTTTATAATAAACATGTTTTTCTTTTT-----CTTTAAACTTTGGATTTTAAAGCATATACGTGAGACACAATCTACTAA-TTTTTTCTTTGATCTATATCTCGTCTA-CTAGTAT >Lolium_multiflorum AGACTCTAATTCTAGGTTCCTCCAAATTTTTCTATAATCAACATGTTTTCTTTTTTTTTT-CTTTTCATTTTGGATTTTAAAACATATACGTAAAACACAATCTACTAAATTTATTCTTTGATCTAAATTTTACTTAACTAGTAT >Lolium_perenne AGACTCTAATTCTAGGTTCCTCCAAATTTTTCTATAATCAACATGTTTTCTTTTTTTTTTTCTTTTCATTTTGGATTTTAAAACATATACGTAAAACACAATCTACTAAATTTATTCTTTGATCTAAATTTTACTTAACTAGTAT >rpl14:rpl16 >outgroup -----TTGTTTTTATTTCCATTTGTTATTTCAATGCAAAAGGATGAAAGAAATATTGTCATTTATTTCAGAAAGGAAAAAACCATTTT--ATCTTCAATACTCCT----TTTTTGGGGGTT >Lolium_multiflorum TTATTTTGATTTCAATTTGTTTTGTTATTTCAATGCAAAAGAATGAAAGAAATATTGTCTTTTTAGAAAGAAAAACGGGGCTTTTTTTTTATGTTCAATACCCGTTTAGTTTTAGGGGGTT >Lolium_perenne TTATTTTGATTTCAATTTGTTTTGTTATTTCAATGCAAAAGAATGAAAGAAATATTGTCTTTTTAGAAAGAAAAACGGGGCTTTTTTTTTATGTTCAATACCCGTTTAGTTTTAGGGGGTT >rpl16:rps3 >outgroup GCAATTATATTAAAAGATTTATCAATTTTCATTAAATCTTATAGAAAGAGGTATAATTTCTTCTTTTTTTTAGGGATTTT---------TGGAAAAA------GAAAATAAGGTTCTTGTC-TTTTTTATTCTATCACTGGGTATGATGGGAAGGCATCGTTAG >Lolium_multiflorum GCAATTATATTAAATGATTTATCAATTTTCATTAAATCTTATAGAAAGAGGTAGAATTTCTTCTTTTTTTCAGGGATTTTCTTTTTTTTT-CAAGGATTTCGGGAAAAAAAGTCTCTTGTTATTTTTTATTCTATCACTGGACAGAATGCAAAGATAAGATTAG >Lolium_perenne GCAATTATATTAAATGATTTATCAATTTTCATTAAATCTTATAGAAAGAGGTAGAATTTCTTCTTTTTTTCAGGGATTTTCTTTTTTTTTTCAAGGATTTCGGGAAAAAAAGTCTCTTGTTATTTTTTATTCTATCACTGGACAGAATGCAAAGATAAGATTAG >rpl22:rps19 >outgroup AATAAGGTTATTCCCCGCCTACCTTTACTTTATTTGAAATTTGAATCCTATCAATTTTGTTTATTCTGAATCTTTCTATTCTGAATTCAG >Lolium_multiflorum AAAAAGGTTATTCCCCGCCTATCTTTACGTTATTT------TGAATCCT-------TTGTTTATTCATAATCTTTCTATTCTGAATTCAG >Lolium_perenne AAAAAGGTTATTCCCCGCCTATCTTTACGTTATTT------TGAATCCT-------TTGTTTATTCATAATCTTTCTATTCTGAATTCAG >rps19:trnH-GUG >outgroup GCTGATTACTCCTTTTTT-----CATTTTAAAGAGTGGCATCCTATGTCCACTATCTCGATCGAGGTATGTAGGTCAGAATAAATAGGATAATGATGAATGGAAAAAAGAGAAAA-TCCTTTAGCTGGATAAGG- >Lolium_multiflorum GCTGATTACTCCTTTTTTTTTT-CTTTTTAAAGAGTGGCATTCTATGTCCAATATCTCGATCGAAGTATGGAGGTCAAAATAAATAGAATAATGATGAATGAAAAAAAGAGAAAAATCCTTTAGCTGGATAAGGG >Lolium_perenne GCTGATTACTCCTTTTTTTTTTTCTTTTTAAAGAGTGGCATTCTATGTCCAATATCTCGATCGAAGTATGGAGGTCAAAATAAATAGAATAATGATGAATGAAAAAAAGAGAAAAATCCTTTAGCTGGATAAGGG >rpl23:trnI-CAU >outgroup AATCGACTTTCCCTCCTATGCTCTGAGTTCCAGTATCGATAAGAATTCGAGTTCTTATTGTTCTTATGTTATGGTATGAATATACCATACCAATTCGTTATGTATGGATGATGGATGAGATTCCATGGATAGAGAGCCAGTTCCAATAGACTTATGGAACGTTCCCGTTCGCG >Lolium_multiflorum AATCGACTTTCCCTCCTATGCTCTGAGTTCCAGTATCGATAAGAATTCGAGTTCTTATTGTTCTTATGTTATGGTATGAATATACCATACCAATTCGTTATGTATGGATGATGGATGAGATTCCATGGATAGAGAACCAGTTCCAATAGACTTATGGAACGTTCCCGTTCGCG >Lolium_perenne AATCGACTTTCCCTCCTATGCTCTGAGTTCCAGTATCGATAAGAATTCGAGTTCTTATTGTTCTTATGTTATGGTATGAATATACCATACCAATTCGTTATGTATGGATGATGGATGAGATTCCATGGATAGAGAACCAGTTCCAATAGACTTATGGAACGTTCCCGTTCGCG >trnI-CAU:trnL-CAA >outgroup TAACAGGGATCATCGTACATCGTAAATAACCAATTTTGATATAGAAAGACATATCATAGAAAAATGAAATTGAAAATATTCGGAGATGGCAAATATTCGGAGATGACTATGAAAACACCTCTCCGGATCCTCGAATTGAAAGAGAGATTGAGAGGGATCAAGAATCCTAATTCTCGCTATTTTGAATGGATCCAATTCTATTGAGTCTGACCCATAGTGATCATTTCTCTTTAGCAAAGAATGACCTTGGTTATCAAAGGATTGAACAACCGGGATCCATTTACTTATGATACCTAGTTGACATTGCTAACAAGGATCTAATGAATTATGAGTTTAATAGATCCTCTTTAGCAGAAAGACGTATATTCCTTGCTCATTATCAGACAATCACTTATTCCCAAACCTCGTGTGGGGCTAATCGTTTTCATTTACCATCTCATGGAAAACCCTTTTCGTTCCGCTTAGCCCTATCGGGTATTTTAGTGATAGGTTCTATAGGAACTGGACGATCCTATTTGGTCAAATACCTAACGAAAAATTCCTATTTTCCTTTCGTTAAGGTACGAGGGCTTCTTATTCCACAAGAACGAAAGCACCTTTTCATTCTTTCATATACTAGGG-TTTTTACTTGGAAAAGACAATGTTCCATACTAAAGGATTCGGGTCCATAACCACGAGTTCCAGTGCACTAGATCTTGTAGCACTTAGCAACGAGGCCCTATCCATTAGTATTCCACATAAGAAATCCATTATAGAAACTAATACAATTAGATTAGCTCCTCATAGACAAACTTGGGGTTTGCGAGCCAAGATAAGACCGGCTCGGGATCATGGGACCCTTTTCTATCAGATAGGAGGGGATCTTGTACAAAATAGACTTCTAAGTAATAACCCCATAGATCCTATATCTATCTATATAAAGAGGCAATCGTGTCAGGAAGCGGCTTTTTCTTTGGCCAAAC-----GGTACTTCGAACTTGTAACGAGCATGAAGAGATTAACGAGACTTCTTTCTCTTTTGAGTTTTTCTGGCGGACCGGTCGCGCAAGATCTTTGGTCTTCCCC-----CGGAACCGATGAAAAA--GTGGGTCGCTTCTTATGGACTCGCTCAGAATGATTCTTCTCTATCTATAGTTCATGGCCTATTAGAAGTAGAAGGTGCTCTGGTGCAATCCTTACCGACAGAAAAAGATTGCAGTTGGGTTGAT------CGAATGCCATTACTTCGTCGGTCCGAACCAAGGAATCCATTAGCAATGTTTTGAAATGGATATTGTTCTCTCTTTGATTAGGGATTGCTATATGAAAAGAAGTGGAGTTTGAAAAAGGGAACGGAATGGTCAAACCGGAACTGCTAGAGGAACGAATTTTCAATAGCATAACTTGGGCTCCTAGAATATGGGGCCCTTGGGACAATCTATTTGATTGCAGGGACAGGTACGCTGAATATGACTGGGGATTTTCCTATGGGTATTGGAGCGGGTCCAAGCAGATTAAAGAGGATGAGTTGTCAGAGACTGCTATTTATTCGAATTATTTCTGGTATATTTATCATAAAAAGGAGGAGGTGCAAGAGACTGATTCGGACTTCTTGCAGAGTGGAACAATGCAGTACCAGACACGAGATATATCTTTCAAAGAAGAAGGCTTTTTTCGAATAAGCCAATTGATTTGGGACCCTTCGGATCCATTCTTTTTCCTATTCAAAGATCAGGCCTTTGTCTCTGTGTTTTCACGTCGAGAATTCTTTGCAGATGAAGATGAAGAGATGGCAAAGCGGCTTAGTACCAGTACCTGGAGAAAAAAGCCTCCTAAACATATGGCTAGCAACCGGTTCACCAGGAGTACGCAAGAAAGGCAAAAGCACTACGAATTATTGATTTAGGAATGGGAATGGGCTAGAACCCTGGGTTCTTCCTTATATAATTAATGGTCTTTTCATTCTAATACTCTATCCGAGAGTTCTCAGTATTTAGCAAAGCTGTTCCTATCTAACGGAAGGCTCCTGGATCAACAAAGACATTGTTTGTGGAGAAAGAGGTGGCTTTTCCCGGATGAAATGAAACATTTGATTTGTGTAACAGGAGAAAGATTTCCCACTCCTTAGCCGTAAAGATATGTGGCCATGAAAAAGGGAGGGGATTCAGTGGAACAGGATTGGCCGGGCGGTAGAGTCGTGGAAACACTTGTTGATTCCTATTTTGGACCCTAGCTCCATGGAACAATATGCTACTGCGGAAACATGGAAGAATTGCAATCTTAGATCAAAACACTATGTATGATGATATGAACTGCCTAAATAAGAATTCTTGAGCGTCGAACAACCTGAGTACTAACTACATCAAACAATTTGCATTAATGAAACTGTGTAAATCCACCGGATAATCAAAAATACGCATGTCTGATGAAATGGTTGTTGCTATCTGCTTCCATAACGAATCCTTGGTTTAACTGAATAAGTAAAGAAAATTGGCCCTTTCTCTTCGTCTCAGATCGATGGATCTTCTCGATTGGAAGATCTCCCATATGGATAATACACATTCCAGTTGACCGAGCCTAATGCTAATTGTTTTGTTCCGAAGCAAAGATATCCGCGGAGGCCGGTTCGTTCGTCCTATTCTGATATTCAGGACCAAGAGGTCCTGGATTCTCTTTCGGATAGGCCCTGAAAGGAGAAGAGAAGCTGAAATGCCAACGGACCCCTGTCTATTCTCTAATTCACCCGATCCGATAGTACCCGTTTTTGGAACGTCCAGTGCCAAAGTCACTGAATGGGTAAGTCACCAATCCAATCCCTTTGACAAATCGGGTGTCATATTAGATATCATATTCTATATATATA--GAAATATCATAGAATAGACATATAGAATTTTAGGTTGGGAAATTCGAATGAATCATTGAGTGAAAAAGGAGCAAAGAATGACAAAAGATGAGACTCTACTAGTCTTCACTCTTGTGGTTTCCTCGGTTTCTGTTTTCTTATTCGGGATCTTGCTTTTCATGGTTCTCATCTCTG-----CGCGATTTTCGCGAGAGAACCAAATCCAAGTTGGTGAAGATCATGATTTGGGCTGGCATAGTAGTTATGACCTTTGCAATTGCGGTTCGAATCTATCCGATCTTTCTCTTTTTGCTCAAAGAACGAATAAAACCCCTTGTTGAAGCCCTTTATGATAAGCTTCCCTGGATCTGGGAAGTTTCTCTTTCACGGTATTGGGATCGTTTGATCGATTTCCTT-----GATCGCTACTTA-TGGGCGTGCGCTCAAAGGATACAAACAGGGATTCGCAAACAAAAAGGGGAATTCGTAGTCACTTTTTCCTGTCGCGTAAAAAAAAAGGCTTTACGCGAGAGCAATAGAGGTTGGGATACATCTATCTCTTCTGAGCAACCTCTTTTGGATTCTTAAGACCACCCTTGCAGTAGGATACCGTCTGCTTTAGGTTCTTTATTATCTCCTTCGAGGGGTTTTTAGGATCGTTCAGGCTATATTTAGTCTATTTTGGCTTTTGCTGTCTACTTTTCTCAGGGAGATGGTTAAGGACCTCAGAAGATAGAGGAGAGCGCCAGGCGCTGATTTCCGGAATACTTCTACGGGGAATGCTCATTCAATGAGCATTCTCCATATTA >Lolium_multiflorum TAACAGGGATCATCGTACATCGTAAATAACAAATTTTCATATAGAAAGGCATATCATAGAAAAATGAAATCGAAAATATTAGGAGATG-----------------ACTATGAAAACACCTCTCTGGATCCTCGAATTGAAAGAGAGATTGAGAGGGATCAAGAATCCTAATTCTTGCTATTTGGAATGGATCCAATTCTATTGAATCTGACTCATAGTGATCATTTCTCTTTAGCAAAGAATGACCTTGGTTATCAAAGGATTGAACAACCGGGATCCATTTACTTATGATACCTAGTTGGCATTGATAACAAGGATCCAATGAATTATGAGTTTAATAGATCCCCTTTAGCAGAAAGACCTATATTCCTTGCTCATTATCAGACAATCACTTA-----------------------------------------CTCATGGAAAACCCTTTTCGTTCCGCTTAGCCCTATCGGGTATTTTAGTGATAGGTTCTATAGGAACTGGACGATCCTATTTGGTCAAATACCTAACGAAAAATTACGATTTTCCTTTCAGTAAGGTACGAGGGCTTCTTATTCCACAAGAACGAAAGCACCTTTTCATTCTTTCATATACTAGGGGTTTTTACTTGGAAAAGACAATGTTGCATACTAAAGGATTCGGGTCCATAACCACGAGTTCCAGTGCACTAGATCTTGTAACACTTAGCAACGAGGCCCTATCCATTAGTATTCCACATAAGAAATCCATTAAAAAAAA-AATACAATTAGATTAGCTCTTCATAGACAAACTTGGGGTTTGCGAGCCAAGGTAAGATCGGCTCGGGATCATGGGACCCTTTTCTATCAGATAGGAGGGGCTCTTGTACAAAATAGACTTATAAGTAATAACCCCATCGA------ATCTATCTATATAAAGAGGCAATCGTGTCAGGAAGCGGGTTTTTCTTTGGCCAAAAGAAAAGGTACTTCGAACTTGGAACGAGCATGAATAGATTAACGAGACTTCTTTCTCTTTTTCGTTTTTCTGGCGGACCTGCCGCGCAAGATCTTTGGTCTTCCCCTGGCCTGGAACCGATGAAAAAAAGTGGATCGCTTCTTATGTACTCGCTCAGAATGATTCTTCTCTATCTATAGTTCATGGCCTATTAGAAGTAGAAGGTGCTCTGGTGCAATCCTTACCGACAGAAAAAGATTGCAGCCAGGTTGATAATAATCGAGTGCCATTACTTCGTCGGTCCGAACCAAGGAATCCGTTAGAAATGTTTTGAAATGGATATTGTTCTCTCTTTGATCAGGGATTGCTATATGAAAAGAAGTGGAGTTTGAAAAAGGGAACGGAATGCTCAAACCGGAACTGCTAGAGGAACTAATTTTCAATAGCATAACTTGGGCTCCTAGAATATGGCGCCCTTGGGACAATCTATTTGATTGCAGGGTT---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TTGTTTTGTTCCGAAGCAAAGATATCCGCGGGGTCCGGTTCGTTCGTCCTATTCTGATATTCAGGACCAAGAGGTACTGGATTCTCTTTCGGATAGGCCCTGAAAGGAGAAGAAAGGCTGAAATGCCAACGGACCTCTGTCTATTCTCTAATTCACCCGATCCGATAGTACCCGTTTTTGGAACGTCCAGTGCCAAAGTCACTGAATGGGTAAGTCACCAATCCAATCCCTTTGACAAATCGGGTGTCATATTAGATATCATATTCTATATATATATAGAAATATCATAGAATAGAGATATAGAATTTTTGGTCGGGAAATTAGAATGAATCATTGAGTGAAAAAGGAGCAAAGAATGGCAAAAGACGAGACTCTACTAGTCTTCACTCTTGTGGTTTCCTCGGTTTCTGTTTTCTTATTCGGGATCTTGCTTTTCATGGTTCTCATCTCTGCAACTCGCGATTTTCGCGAGAGAACCAAATCCAAGTTGGTGAAGATCATGATTTGGGCTGGCATAGTAGTTATTACCTTTGCAATTGCGGTTCGAATCTATCCGATCTTTATCTTTTTGCTCAAAGAACGAAGAAAACCCCTTGTCGAAGCCCTTTATGATAAGCTTCCCTGGATCTGGGAAGTTTCTCTTTCACGGTATTGGGATCGTTTGATCGATTTCCTTGATTTGATCGCTACTTAATAGGCGTGTGCTCAAAGGATACAAACAGGGATTCGCAAACAAAAAGGGGAATTCGTAGTCATTTTTTCCTGTCGCGTAAAAAAAA-GTCTTTACGCGAGAGCAATAGCGGTTGGGATACATCTATCTCTTCTGAGCAACCTCTTTTGGATTCTTAAGACCACCCTTGCAGTAGGATACCATCTGCTTTGGGTTCTTTATTATCTCCTTCGAGGGATTTTTAGGATCGTTCAGGCTATATTTAGTCTATTTTGGCTTTTACTGTCTACTTTTCTCAGGGAGATGGTTAAGGACCTCAGAAGATAGAGGAGAGCGCCAGGCGCAGATTTTCGGAATACTTCTACGGGGAATGCTGATTGAATGAGCATTCTCCATATTA >Lolium_perenne TAACAGGGATCATCGTACATCGTAAATAACAAATTTTCATATAGAAAGGCATATCATAGAAAAATGAAATCGAAAATATTAGGAGATG-----------------ACTATGAAAACACCTCTCTGGATCCTCGAATTGAAAGAGAGATTGAGAGGGATCAAGAATCCTAATTCTTGCTATTTGGAATGGATCCAATTCTATTGAATCTGACTCATAGTGATCATTTCTCTTTAGCAAAGAATGACCTTGGTTATCAAAGGATTGAACAACCGGGATCCATTTACTTATGATACCTAGTTGGCATTGATAACAAGGATCCAATGAATTATGAGTTTAATAGATCCCCTTTAGCAGAAAGACCTATATTCCTTGCTCATTATCAGACAATCACTTA-----------------------------------------CTCATGGAAAACCCTTTTCGTTCCGCTTAGCCCTATCGGGTATTTTAGTGATAGGTTCTATAGGAACTGGACGATCCTATTTGGTCAAATACCTAACGAAAAATTACGATTTTCCTTTCAGTAAGGTACGAGGGCTTCTTATTCCACAAGAACGAAAGCACCTTTTCATTCTTTCATATACTAGGGGTTTTTACTTGGAAAAGACAATGTTGCATACTAAAGGATTCGGGTCCATAACCACGAGTTCCAGTGCACTAGATCTTGTAACACTTAGCAACGAGGCCCTATCCATTAGTATTCCACATAAGAAATCCATTAAAAAAAA-AATACAATTAGATTAGCTCTTCATAGACAAACTTGGGGTTTGCGAGCCAAGGTAAGATCGGCTCGGGATCATGGGACCCTTTTCTATCAGATAGGAGGGGCTCTTGTACAAAATAGACTTATAAGTAATAACCCCATCGA------ATCTATCTATATAAAGAGGCAATCGTGTCAGGAAGCGGGTTTTTCTTTGGCCAAAAGAAAAGGTACTTCGAACTTGGAACGAGCATGAATAGATTAACGAGACTTCTTTCTCTTTTTCGTTTTTCTGGCGGACCTGCCGCGCAAGATCTTTGGTCTTCCCCTGGCCTGGAACCGATGAAAAAAAGTGGATCGCTTCTTATGTACTCGCTCAGAATGATTCTTCTCTATCTATAGTTCATGGCCTATTAGAAGTAGAAGGTGCTCTGGTGCAATCCTTACCGACAGAAAAAGATTGCAGCCAGGTTGATAATAATCGAGTGCCATTACTTCGTCGGTCCGAACCAAGGAATCCGTTAGAAATGTTTTGAAATGGATATTGTTCTCTCTTTGATCAGGGATTGCTATATGAAAAGAAGTGGAGTTTGAAAAAGGGAACGGAATGCTCAAACCGGAACTGCTAGAGGAACTAATTTTCAATAGCATAACTTGGGCTCCTAGAATATGGCGCCCTTGGGACAATCTATTTGATTGCAGGGTT---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TTGTTTTGTTCCGAAGCAAAGATATCCGCGGGGTCCGGTTCGTTCGTCCTATTCTGATATTCAGGACCAAGAGGTACTGGATTCTCTTTCGGATAGGCCCTGAAAGGAGAAGAAAGGCTGAAATGCCAACGGACCTCTGTCTATTCTCTAATTCACCCGATCCGATAGTACCCGTTTTTGGAACGTCCAGTGCCAAAGTCACTGAATGGGTAAGTCACCAATCCAATCCCTTTGACAAATCGGGTGTCATATTAGATATCATATTCTATATATATATAGAAATATCATAGAATAGAGATATAGAATTTTTGGTCGGGAAATTAGAATGAATCATTGAGTGAAAAAGGAGCAAAGAATGGCAAAAGACGAGACTCTACTAGTCTTCACTCTTGTGGTTTCCTCGGTTTCTGTTTTCTTATTCGGGATCTTGCTTTTCATGGTTCTCATCTCTGCAACTCGCGATTTTCGCGAGAGAACCAAATCCAAGTTGGTGAAGATCATGATTTGGGCTGGCATAGTAGTTATTACCTTTGCAATTGCGGTTCGAATCTATCCGATCTTTATCTTTTTGCTCAAAGAACGAAGAAAACCCCTTGTCGAAGCCCTTTATGATAAGCTTCCCTGGATCTGGGAAGTTTCTCTTTCACGGTATTGGGATCGTTTGATCGATTTCCTTGATTTGATCGCTACTTAATAGGCGTGTGCTCAAAGGATACAAACAGGGATTCGCAAACAAAAAGGGGAATTCGTAGTCATTTTTTCCTGTCGCGTAAAAAAAA-GTCTTTACGCGAGAGCAATAGCGGTTGGGATACATCTATCTCTTCTGAGCAACCTCTTTTGGATTCTTAAGACCACCCTTGCAGTAGGATACCATCTGCTTTGGGTTCTTTATTATCTCCTTCGAGGGATTTTTAGGATCGTTCAGGCTATATTTAGTCTATTTTGGCTTTTACTGTCTACTTTTCTCAGGGAGATGGTTAAGGACCTCAGAAGATAGAGGAGAGCGCCAGGCGCAGATTTTCGGAATACTTCTACGGGGAATGCTGATTGAATGAGCATTCTCCATATTA >trnL-CAA:ndhB >outgroup TCTTGAAAGTGAATCGTATTCCATGAATATGATATCTATCGAATGTGATATATGGAATATATGACAAAGGTGGAGTCTTGGAGTATTTCGATCGATCG-----ATAGGCCTGAGTCAGACATCAAATAGCTTCGATTTGCATTATCCGTAGGACACCTTATATGTATCAAAATCGATATCAAAATCAAAAA-------GATGTACAATCCAATTTCTCGATTCAATAGAAGCCCAAAGAGGTGCATATGGTACCCAAATAAGGATAGGATAGATATGTCAAAAGCAGGTCTGATTACACCTATTCCTAATCCTAAATAGAATGTAAGGACGTAGGGATTTCTATGTAAACAGAGTATCCTATTTCCATAGGCTCGAATGACCCCTTCTCATAATAAGAATGTGCACGGTCTGGTCCGGTATGGAATGAACTTATAATCTGATGATCGAGTCGATTCCATGATTATAAGTTCATAACCCTAGCACCCATTCCCATTTTGGGCGGAACAGATCTACTAATTCTTTTATTCCAGTTAGTAAGAGGGATCTTGAACTAAGAA----ATAGACCTAGCAG >Lolium_multiflorum TCTTGAAAGTGAATCATATTCCATGAATATGATATCTATCTAATGTGATATATGGAATATATGACAAAGGTGGAGTCTTGGAGTATTTCGATCGATCGGTCATATAGGCCTGAGTCAGACATAAAATAGCTTCGATTTGCATTATCCGTAGGACACCTTATATGTATCAAAATCGATATCAAAATCAAAAAGATGAAAGATGTACAATCCAATTTCTCGATTCAATAGAAGCCCAAAGAGGTGCATATGGTACCCAACTAAGAATAGGATAGATATGTCAAAAGCAGGTCTGATTACACCTATTCCTAATCCTAATCTGATTACA--------------CCTAT------------TCCTAATCCTAAA---TAGAATG--------------TAAGGACGTAGGGATTTCTATGTAA-ATGGAATGAACTTATAATCTGATGATCGAGTTGATTCCATGATTATAAGTTCATAACCCTAGCGCCCATTCCCATTTTGGGCGGAACAGATCTACTAATTCTTTTATTCCAGTTAGTAAGAGGGATCTTGAACTAAGAAAGAAATAGACCTAGCAG >Lolium_perenne TCTTGAAAGTGAATCATATTCCATGAATATGATATCTATCTAATGTGATATATGGAATATATGACAAAGGTGGAGTCTTGGAGTATTTCGATCGATCGGTCATATAGGCCTGAGTCAGACATAAAATAGCTTCGATTTGCATTATCCGTAGGACACCTTATATGTATCAAAATCGATATCAAAATCAAAAAGATGAAAGATGTACAATCCAATTTCTCGATTCAATAGAAGCCCAAAGAGGTGCATATGGTACCCAACTAAGAATAGGATAGATATGTCAAAAGCAGGTCTGATTACACCTATTCCTAATCCTAATCTGATTACA--------------CCTAT------------TCCTAATCCTAAA---TAGAATG--------------TAAGGACGTAGGGATTTCTATGTAA-ATGGAATGAACTTATAATCTGATGATCGAGTTGATTCCATGATTATAAGTTCATAACCCTAGCGCCCATTCCCATTTTGGGCGGAACAGATCTACTAATTCTTTTATTCCAGTTAGTAAGAGGGATCTTGAACTAAGAAAGAAATAGACCTAGCAG >ndhB:rps7 >outgroup AATTAGTAACTGCAGCCAATCTCCGAAAAGTCCCGATTGTTTCGATTTTTGGAATGGGATATTTACGGAATCCCCATGAATAGGATCAAACCTTATTCCATGCTATTTCCATAAGATTCCTCTTTCTTATTCTTAAGCAAGCCCCCGAGAGGGCTTAGTTGATCATGATTTCTGTTTTCTCTTTCTTTTCCTTTTTATTTGTTTCGAAAAAGATATCGTCCGATTCTCCTTCTATTGATTCTTTTCCGATCGAGATGTATGGATCCATGTGTCTACATACCTAGATTCTGTTCATGGA >Lolium_multiflorum AATTAGTAACTGCATCCAATCTCCGAAAAGTCCCGATTGTTTCGATTTTTGGAATGGGATATTTAGGGAATCCCCATGAATAGGATCAAACCTTATTCCATGCTATTTCCATAAGATTCTTCTTTCTTATTCTTAAGCAAGCCCTCGAGAGGGCTTAGTTGATCATGATTTCTGTTTTCTCTTTCTTTTGCTTTTTGTTTGTTTCGAGAAAGATATTGTCCGATTCTCCTTCTATTGATTCTTTTCCGATCGAGATGTACGGACCCATGTGCCTACATGCCTAGATTCTGTTCATGGA >Lolium_perenne AATTAGTAACTGCATCCAATCTCCGAAAAGTCCCGATTGTTTCGATTTTTGGAATGGGATATTTAGGGGATCCCCATGAATAGGATCAAACCTTATTCCATGCTATTTCCATAAGATTCTTCTTTCTTATTCTTAAGCAAGCCCTCGAGAGGGCTTAGTTGATCATGATTTCTGTTTTCTCTTTCTTTTGCTTTTTGTTTGTTTCGAGAAAGATATTGTCCGATTCTCCTTCTATTGATTCTTTTCCGATCGAGATGTACGGACCCATGTGCCTACATGCCTAGATTCTGTTCATGGA >rps7:trnV-GAC >outgroup AGCGTGAAAGAGGTTCAAGAATCCGTTTTCTTTTTATAAGGGCTAAAAACGAATCACTTATTTTTTTGGCTTTTTGACCCCATATTGTAGGGTGGATCTCGAAAGATAGGAAAGATCTCCCTCCAAGCCGTACATACGACTTTCATCGAATACGGCTTTCCACAGAATTCTATAGGGATCTATGAGATCGAATATGGAATTCTGTTTACTCACTTTAAATTGAGTATCCGTTTCCCTCCTTTTCCCGCTAGGACCGGAAATCCTGTATTTTCCATATCCATACGATCGAGTCCTTAGGTTTCCGAAATAGTGTAATGGAAAAAGAAGTGCTTCGAATCATTGCTATTTGACTCGGACCTGTTCTGAAAAAGTCGAG-----TCGAATTGTTTGTTGACACGGACAAAGTAAGGGAAAACCTCTGAAAGAATTTCCATATTGACCTTGGACATATAAGAGTTCCGAATCAAATCTCTTTAGAAAGAAGATCTTTTGTCTCATGGTAGCCTGCTCCAGTCCCCTTACGAAACTTTCGTTATTGGGTTAGCCATACACTTCACATGTTTCTAGCGATTCACATGGCATCATCAAATGATACAAGTCTTGGATAAGAATCTACAACGCACTAGAACGCCCTTGTTGACGATTCTTTACTGCGACAGCATCTAGGGTTCCTCGAATAATGCGATATCTCACACCGGGTAAATCCTTAACCCTTCCTCCTCTTACTAATACTACAGAGTGTTCTTGTAAATTATGGCCAATACCAGGTATATAAGCAGTGATTTCAAATCCAGAGGTTAATCGTACTCTGGCAACTTTACGTAAGGCAGAGTTGGGTTTTTTGGGGTTGATAGTGGAAAAGTCGACAGATAAGTCATCCTTACTGTCCCTCTACAGAACCGTACATGAGATTTTCACCTCATACGGCTCCTCGTTCAATTCTTTCGAAGGGATCCTTTTCCTCGTTCGAGAGTCTCCGCCCTTCTTCCACTCCGTCCCGAAGACTAACTAAGACCAATTGAGTCACGTTTTCATGTTCTAATTGAACACTTTCCATTTATGAT-----TAAA--------------------GGAGAAGATTGTTCTTTTACCAAACATATGCGGATCAAATCAC-TCTTATAATAAGAAGAAATCTTTCTCGGTATCAATCCCCTTGCCCCTCATTCTTTGAGAATCAGAAGGATCCTTTTCGAGTTTCCATTTCTTCATTTTGAATCTAGGCTCTTCTATCTTCGACTTATTTTTTTGGCTTTATTCTTTATTTATTTCATTTCGATTTTTCCCTCTTCCTCTATCCCTATCCTCTAGGTACAGCGTTTGCATCAATAGAGAACTTTTTCCTCTGTATGAATCGATATTATTCCATTCCAATTTCTTCCCGAAACTTCCCAAGAAAAATCCCGAATTGGATCCAAAATTGACGGGTTAATGTGAGCTTATCCATGCGGTTAGGCACTCTTCAAATAGGAATCCATTTTCTAACTGGCTTTCGTGCTTTGGTGAGTCGTCCGAGATCCTTTCGATGACCTATGTTGTGTTGAAGGGATATCTATATGATCCGATCGATTGCATAAGAACCGCGGTAGCAATAGAACGGGGAAAGTATACAGAAAAGACAGTTCTTTTCAATTTCGATTATCTATATATTAGTTCGTTTCTATTTCTAGATATCTATTTCTATATATTAGTATTAGTTAGTAGTACTATTCTATTAGTTTCTATTAGTTAGCGATCCCGGCTCTGTGAGTTCTTTCTTCCGTGATGAACTGTCGGCACCAGTCCTACATTTTTTCTCTGTGGACCGAGGAGAAAGGGGGCTCAGCAGGAAGAGGATTGTACCATGAGAGAAGCACAGAGGTCAACCCGCTTCAAATATGGAACATGGATTCTGGCAATGCAACGGAGTTGGGTCCTCATATCGA-----TCCGAATGAATCAGTCTTTCTACAGAGGTCAATCTTTGCCTATTAGGCAAGAGGATAGCAAGTTCGAAATTCTGTCTCGGTAGGACATGGATTTCTATTACTATGAAATTCATAAATGAAAATGAAGTAGTTAATGGGAGGGCTACCATTATCCTTTTTCTTGTATGTGTTCCTAAGAGAAGGAATTTGTCCATTTCATGTTTCGAGGTCTCAAAAAAAGGGCGTGGAAACAGATAGAAACTCTTGAATGGAAATTGAAAAGAAATGTAGCCCCAGTTCCTTCGGAAATGGTAAGATCTTTGGCGCAAGAAGAAGGGGCGACCCATATCATCTTGACTTGGTTCTGCTTCCCCTCTTTTTTTAAGAATACCGAGTCGGGTTCTTCTCCTACCAGTATCGAATAGAACATGCTGAACAAGATCTTCTTCATGGAAACCCGCTCGATTTAGATCGGGAAAATCGTACAGATTTTATGAAACCATGTGCTATGGCTCGAATCCATAGTCAATCCTATTTTCGATAGGACCGGTTGACAATTGAATCCAATTTTTCCCATTATTTGACTGTCCATAATAGTGCGGAAAGAAAGCCCGGAAGAAGAGTGGCCTGGCCTTGAGTTTCTCGCCCCTTTGCCTTAGGATTCGTTAATTCTCTTTCTCGATGGGGCGGGGA >Lolium_multiflorum AGCGTGAAAGAGGTTCAAGAATCCGTTTTCTTTTTATAAGGGCTAAAA-----TCACTTATTTTTTTGGCTTTTTGACCCCATATTGTAGGGTGGATCTCGAAAGATAGGAAAGATCTCCCTCCAAGCCGTACATACGACTTTAATCGAATACGGCTTTCCACAGAATTCTATAGGGATCTATGAGATCGAGTATGGAATTCTGTTTACTCACTTTAAATTGAGTATCCGTTTCCCTCCTTTTCCCGCTAGGATCGGAAATCCTGTATTTTCCATATCCATACGATCGAGTCCTTAGGTTTCCGAAATAGTGTAATGGAAAAAGAAGTGCTTCGAATCATTGCTATTTGACTCGGACCTGTTCTGAAAAAGTCGAGGTATTTCGAATTGTTTGTTGACACGGACAAAGTAAGGGAAAACCTCTGAAAGAATTTCCATATTGACCTTGGACATATAAGAGTTCCGAATCGAATCTCTTTAGAAAGAGGATCTTTTGTCTCATGGTAGCCTGCTCCAGTCCCCTTACGAAACTTTCGTTATTGGGTTAGCCATACACTTCACATGTTTCTAGCGATTCACATGGCATCATCAAATGATACAAGTCTTGGATAAGAATCTACAACGCACTAGAACGCCCTTGTTGACGATTCTTTACTGCGACAGCATCTAGGGTTCCTCGAATAATGCGATATCTCACACCGGGTAAATCCTTAACCCTTCCTCCTCTTACTAATACTACAGAATGTTCTTGTAAATTATGGCCAATACCAGGTATATAAGCAGTGATTTCAAATCCAGAGGTTAATCGTACTCTGGCAACTTTACGTAAGGCAGAGTTGGGTTTTTTGGGGTTGATAGTGGAAAAGTCGACAGATAAGTCACCCTTACTGTCCCTTTACAGAACCGTACATGAGATTTTCACCTCATACGGCTCCTCGGTCAATTCTTTCGAAGGGATCCTTTTCCTCGTTCGAGAGTCTCCGCCCTTCTTCCACTCCGTCCCGAAGACTAACTAAGACCAATTGAGTCACGTTTTCATGTTCTAATTGAATACTTTCCATTTATGATATGATTAAA--------------------GGAGAAGATTGTTCTTTTACCAAACATATGCGGATCAAATAACGTCTTATAATAAGAAGAAATATTTCTCGGTATCAATCCCCTTGCCCCTCATTCTTTGAGAATCAGAAGGATCCTTTTCGAGTTTCCATTTCTTCATTTGGAATCTGGGCTCTTCTATCTTCGACTTATTTTTTTTGCTTTATTCTTTATTTATTTCATTTCGATTTTTCCCTCTTCCTCTATCC------TCTAGGTACAGCGTTTGCATCAATAGAGAACCTTTTCCTCTGTATGAATCTATATTATTCCATTCCAATTTCTTCCCGACACTTCCCAAGAAAAATCCCGAATTGGATCCAAAATTGACGGGTTAATGTGAGCTTATCCATGCGGTTAGGCGCTCTTCAAATAGGAATCCATTTTCTAACTGGCTTTCGTGCTTTGGTGAGTCGTCCGAGATCTTTTCGATGACCTATGTTGTGTTGAAGGGATATCTATATGATCCGATCGATTGCATAAGACCCGCGGTAGCAATAGAACGGGGAAAGTATACAGAAAAGACAGTTCTTTTCAATTTTGATTATCTATATATTAGTAT-------------------------TAGTTAGTAGTATTAGTTAGTAGTACTATTCTATTAGTT-----------------------------------------------------------------------------------ACCGAGGAGAAAGGGGGCTCAGCAGGAAGAGGATTGTACCATGAGAGAAGCACGGAGGTCAACCCGCTTCAAATATCGAACATGGATTCTGGCAATGCAAGGGAGTTGGGTCCTCATATCGATCTGATCCGAATGAATCAGTCTTTCTACAGAGGTAAATTTGTGCCTATTAGGCAAGAGGATAGCAAGTTCTAAATTCTGTCTCGGTAGGACATAGATTTCTATTACTATGAAATTCATAAATGAAAATGAAGTAGTTAATGGGAGGGCTACCGTTATCCTTTTTCTTGTATGTGTTCCTAAGAGAAGTAATTTGTCC---TGATGTTTCGAGGTCTCAAAAAAAGGGCGTGGAAACAGATAGAAACTCTTGAATGGAAATGGAAAAGAAATGTAGCCCCAGTTCCTTCGGAAATGGTAAGATCTTTGGCGCAAGAAGAAGGGGCGACCCATAGCATCTTGACTTGGTTCTGCTTCCCCTCTTTTTTTAAGAATACCGAGTCGGGTTCTTCTCCTGCCAGTATCGAATAGAACATGCTGAACAAGATCTTCTTCATGGAAACCTGCTCGATTTAGATCGGGAAAATCGTACAGATTTTATGAAACCATGTGCGATGGCTCGAATCCATAGTCAATCCTATTTTCGATAGGACCGGTTGACAATTGAATCCAATTTTTCCCATTATTTGACTATCCATAATAGTGCGGAAAGAAAGCCCGGAGGAAGAGTGGCCT-----TGAGTTTCTCGCCCCTTTGCCTTAGGATTCGTTAATTCTCTTTCTCGATGGGACGGGGA >Lolium_perenne AGCGTGAAAGAGGTTCAAGAATCCGTTTTCTTTTTATAAGGGCTAAAA-----TCACTTATTTTTTTGGCTTTTTGACCCCATATTGTAGGGTGGATCTCGAAAGATAGGAAAGATCTCCCTCCAAGCCGTACATACGACTTTAATCGAATACGGCTTTCCACAGAATTCTATAGGGATCTATGAGATCGAGTATGGAATTCTGTTTACTCACTTTAAATTGAGTATCCGTTTCCCTCCTTTTCCCGCTAGGATCGGAAATCCTGTATTTTCCATATCCATACGATCGAGTCCTTAGGTTTCCGAAATAGTGTAATGGAAAAAGAAGTGCTTCGAATCATTGCTATTTGACTCGGACCTGTTCTGAAAAAGTCGAGGTATTTCGAATTGTTTGTTGACACGGACAAAGTAAGGGAAAACCTCTGAAAGAATTTCCATATTGACCTTGGACATATAAGAGTTCCGAATCGAATCTCTTTAGAAAGAGGATCTTTTGTCTCATGGTAGCCTGCTCCAGTCCCCTTACGAAACTTTCGTTATTGGGTTAGCCATACACTTCACATGTTTCTAGCGATTCACATGGCATCATCAAATGATACAAGTCTTGGATAAGAATCTACAACGCACTAGAACGCCCTTGTTGACGATTCTTTACTGCGACAGCATCTAGGGTTCCTCGAATAATGCGATATCTCACACCGGGTAAATCCTTAACCCTTCCTCCTCTTACTAATACTACAGAATGTTCTTGTAAATTATGGCCAATACCAGGTATATAAGCAGTGATTTCAAATCCAGAGGTTAATCGTACTCTGGCAACTTTACGTAAGGCAGAGTTGGGTTTTTTGGGGTTGATAGTGGAAAAGTCGACAGATAAGTCACCCTTACTGTCCCTTTACAGAACCGTACATGAGATTTTCACCTCATACGGCTCCTCGGTCAATTCTTTCGAAGGGATCCTTTTCCTCGTTCGAGAGTCTCCGCCCTTCTTCCACTCCGTCCCGAAGACTAACTAAGACCAATTGAGTCACGTTTTCATGTTCTAATTGAATACTTTCCATTTATGATATGATTAAACCATTTATGATATGATTAAAGGAGAAGATTGTTCTTTTACCAAACATATGCGGATCAAATAACGTCTTATAATAAGAAGAAATATTTCTCGGTATCAATCCCCTTGCCCCTCATTCTTTGAGAATCAGAAGGATCCTTTTCGAGTTTCCATTTCTTCATTTGGAATCTGGGCTCTTCTATCTTCGACTTATTTTTTTTGCTTTATTCTTTATTTATTTCATTTCGATTTTTCCCTCTTCCTCTATCC------TCTAGGTACAGCGTTTGCATCAATAGAGAACCTTTTCCTCTGTATGAATCTATATTATTCCATTCCAATTTCTTCCCGACACTTCCCAAGAAAAATCCCGAATTGGATCCAAAATTGACGGGTTAATGTGAGCTTATCCATGCGGTTAGGCGCTCTTCAAATAGGAATCCATTTTCTAACTGGCTTTCGTGCTTTGGTGAGTCGTCCGAGATCTTTTCGATGACCTATGTTGTGTTGAAGGGATATCTATATGATCCGATCGATTGCATAAGACCCGCGGTAGCAATAGAACGGGGAAAGTATACAGAAAAGACAGTTCTTTTCAATTTTGATTATCTATATATTAGTAT-------------------------TAGTTAGTAGTATTAGTTAGTAGTACTATTCTATTAGTT-----------------------------------------------------------------------------------ACCGAGGAGAAAGGGGGCTCAGCAGGAAGAGGATTGTACCATGAGAGAAGCACGGAGGTCAACCCGCTTCAAATATCGAACATGGATTCTGGCAATGCAAGGGAGTTGGGTCCTCATATCGATCTGATCCGAATGAATCAGTCTTTCTACAGAGGTAAATTTGTGCCTATTAGGCAAGAGGATAGCAAGTTCTAAATTCTGTCTCGGTAGGACATAGATTTCTATTACTATGAAATTCATAAATGAAAATGAAGTAGTTAATGGGAGGGCTACCGTTATCCTTTTTCTTGTATGTGTTCCTAAGAGAAGTAATTTGTCC---TGATGTTTCGAGGTCTCAAAAAAAGGGCGTGGAAACAGATAGAAACTCTTGAATGGAAATGGAAAAGAAATGTAGCCCCAGTTCCTTCGGAAATGGTAAGATCTTTGGCGCAAGAAGAAGGGGCGACCCATAGCATCTTGACTTGGTTCTGCTTCCCCTCTTTTTTTAAGAATACCGAGTCGGGTTCTTCTCCTGCCAGTATCGAATAGAACATGCTGAACAAGATCTTCTTCATGGAAACCTGCTCGATTTAGATCGGGAAAATCGTACAGATTTTATGAAACCATGTGCGATGGCTCGAATCCATAGTCAATCCTATTTTCGATAGGACCGGTTGACAATTGAATCCAATTTTTCCCATTATTTGACTATCCATAATAGTGCGGAAAGAAAGCCCGGAGGAAGAGTGGCCT-----TGAGTTTCTCGCCCCTTTGCCTTAGGATTCGTTAATTCTCTTTCTCGATGGGACGGGGA >trnR-ACG:trnN-GUU >outgroup AGCCTTCCAAAGGGGGAAGGACCTTTACTTTCTCCCTGAGGGTAGGAAAATCATGATCGGAATAGCGGACGTAAAGCTATTGAACTTGGGTATGCTCTTTCCTTTTGTCGAAGTGGAATCGTAGAACAGAATGTGATACGATGAGATAGAATGCAATAGAAACA------AGGATAGCGAACGGGTTACCTACTCCTAAGGGTCAAAGCAAGCCTTTTAATTCAATTCTTTATTCTTACATTAAAGAATGAATCAAAT >Lolium_multiflorum AGCCTTCCAAAGGGGGAAGGGCCTTTACTTTCCCCCTGAGG------AAATCATGATCGGGATAGCGGACGTAAAGCTATTGAACTTAGGTATGCTCTTTCCTTTTGTCGAAGTGGAATCGTAGAGCACAATGTGATACGATGAGATAGAATGCAATAGAAATAGAAATAAGGATAGCGAACGGGTTACCTACTCCTAAGGGTCAAAGCAAGCCCTTTAATTCAATTCTTTATTCTTACATTAAAGAATGAATCAAA- >Lolium_perenne AGCCTTCCAAAGGGGGAAGGGCCTTTACTTTCCCCCTGAGG------AAATCATGATCGGGATAGCGGACGTAAAGCTATTGAACTTAGGTATGCTCTTTCCTTTTGTCGAAGTGGAATCGTAGAGCACAATGTGATACGATGAGATAGAATGCAATAGAAATAGAAATAAGGATAGCGAACGGGTTACCTACTCCTAAGGGTCAAAGCAAGCCCTTTAATTCAATTCTTTATTCTTACATTAAAGAATGAATCAAA- >trnN-GUU:rps15 >outgroup CAAGGGGAGATTCGACCTCCTAGAGTTCAACTCCCGCTCTCAACCCGTGAACAATATGAGTCCGAAGCTTCTTTCGTAACTCCCGGAATTTCTTCGTAGTGGCTCCGTTCCATGCCTCATTTCATAGGGAAGCCCAAAGTGGCTCTATTTCATTCTATTTCACTTCCTAGCACTTCCTATCATTTAATATCCATCCCTTTGGGCTTATTGACATAAGAGATGTCATTTATAGTCTATCTCTTTCTATATATGGAAAGTCAAGAAATTCTCATCGAAACATCGAGAAATTGTGCATATAGAAAACTCTAAAGAAAGAAAAAAAGGAGACCCATGCCATGATTTTCTAATTTTTTCTACTTAGTAGTCTAAGTTTCTCGATGAGGATAATTAATTCGGTCGTTGAGGTCGGACTCTATTATGGATTTCTGACCACATTCTCCATAGGTCCCTCTTAGATCTTCTTTCTCCAATCTTGGGTTAGGGAAGAAGGAGATATTCGCGACTATTGGCG--GTTTCATTATGGGGCAGCTCATGATCTTCATATCGATCTATTATCCACCTCTGCATCTATTCTTTCTTAGCTAAACGGGTGGAAGATCCATCCAATTTGGTTATATCATGGACTCAAAAAACGGATCTGAGTGTGACTGAAATCCACGATCTTCACAGGTATCACTTTTCACGATACCTAAACCTAAAAGGTGGAATAGCGATTTTCGAACCATTTCCTATAAGAGAATGGTTTCCATTACTTTGAGAAATGGATTCT-ATATCAAACTATAGCTATTGCATTAAAGAAGAAAAGAAACTAATAGAAGTCGAAGACGCGGAATGGTAGTGAATAGAGAAAAAGATTCTTCTGATTTTCTTGTTCCTGAAAATATTCTATCTATCTCCTAGACGCCGTAGAGAATTGAGAATTTTCATGTCTTTCAATTCTCGTACTCGTAATTGGAAAGTTACGGAAGGAGATCCATCATTTTGCAATGAAAACAACATAAAAAACTCTGGACAATTTCGAAATCAGACCAAGCGTCTTAATACATATGCAAAAAAATTCATTATTGGCCCACCATTGATTACAAGATTTAGCTTTTATGAATCGCTATTGGTTTGATACGAATAATGGCAGTCCTTTCAGTATGTTAAGGATACAGATGTATCCACAATTCATTTAGAGTTACTTAATAGCCTATTTCTTATACTATATCTCTATCCCGTGAAATTCTCGAGCCGAAAGATGGATGCATATGCTGTGTTTCATTTTGCTAAATGATATCAATTAAATGGTATATCCATTCTAAAAATTGGATATAGCAATAAATAAATCAGCAAAATTCTTT----TATTTTAGATAGAAGAAATGTTTCTTCTATCTAAAATA----AAAGAATGTATCCTTCTATCCAAATCCAATTTGCATCGATAAAATAAATCTAAATTCCAGATTCCAGCAGTAGATGAATAATTGCAAATTTTTGTGTGTACGAGATTAGAATAACTTCAAAATAACTGACATAATTTTTTATTTTTCCTGATCAGAAAAATACATGAAAAAGAAAGGAGGTAGAACAATTTTTTGATTT >Lolium_multiflorum CAAGGGGGGATTCGACCTCTTAGAGTTCAACTCCCGTTCTCAACCCATGAACAATATGAGTCCGAAGCTTCTTTCGTAACTCCCAGAATTTCTTCGTAGTGGCTCCGTTCCATGCCTCATTTCATAGGGAAGCCAAAAGTGGCTCTATTTCATTCTATTTCACTTCCTAGCACTTCCTATCATTTAATATCCATCCCTTTGGTCTTATTGACATAAGAGATGTCATTTATAGTCTATCTCTTTCTATATATGGAAAGTCAAGAAATTCTCATCGAAACATCGAGAAATTGTGCATATAGAAAACTCTAAAGAAAGAAAAAAAGGAGACCCATGCCATGATTTTAAAATCTTTTCTATTTAGTAGTCTAAGTTTCTCGATGAGGATAATTAATTCGGTCGTTGTGGTCGGACTCTATTATGGATTTATGACCACATTCTCCATAGGTCCCTCTTAGATCTTCTTTCTCCAATCTTGGATTAGGGAAGAAGGAGATATTCGCGACTACTGGTGGGGTTTCATTATGGGGCAGCTCATGATCTTCATATCGATCTATTATCCACCTCTGTATCTATTCTTTCTTAGCTAAACGGGTGGAGGATCCACCCAATTT----ATATCATGGACTCAAAAAACGGATCCGAATTTGACTGAAATGCACGATCTTCACAGGTATCACTTTTCACGATACCTAAA------AGGTGGAATAGGGATTTTCGAACCATTTCCTATAAGAGAATGGTTTCCATTACTTTGAGAAATGGATTCTTATATCAAACTATAGCTATTGCATTAAATAAGAAAAGAAACTAATAGAAGTCGAAGACGCGGAATGGTAGTGAATAGAGAGAAAGATTCTTCTTATTTTCTTGTTCCTGAAAATATTCTATCTATCTCCTAGACGCCGTAGAGAATTGAGAATTTTCATGTCTTTCAATTCTCGTACTCGTAATTGGAAAGTTACGGAAGGAGACCCATCATTTTGCAATGAAAACAACATATAAAACTCTGGACAATTTCGAAATCAGGCCGAGCGTCTTAATACATATGCAAAAAAATTCATTATTGGCCCACCATTGATTAGAAGATTTAGCTTGTATGAATCGCTATTGGTTTGATACGAATAATGGCAATCGTTTCAGTATGTTAAGGATACAGATGTATCCACAATTCATTTAGAGTTACTTAATAGCCTATTTCTTATACCATATCTCTATCCCGTGAAATTCTCGAGCCGAAAGATGGATGCATATGCTGTGTTTCATTTTGCTAAATGATATCAATTAAATGGTGTATCAATTCCATAAATTGGATATAGCAATAAATAAATCAGCAAAATTCTTTCTAATATTTTAGATAGAAGAAATGTTTCTTCTATCTAAAATATTAGAAAGAATGTACTCTTCTATCCAAATCTAATTTGCATCGATAAAATAAATCCAAATTCCAG-------CAGTAGATGAATAATTGCAAATTTTTGTGTGTACGAGATTAGAATAACTTCAAAATAACTGACATAATTTTTTATTTTTCCTGATCAGAAAAATAT------------------------------------ >Lolium_perenne CAAGGGGGGATTCGACCTCTTAGAGTTCAACTCCCGTTCTCAACCCATGAACAATATGAGTCCGAAGCTTCTTTCGTAACTCCCAGAATTTCTTCGTAGTGGCTCCGTTCCATGCCTCATTTCATAGGGAAGCCAAAAGTGGCTCTATTTCATTCTATTTCACTTCCTAGCACTTCCTATCATTTAATATCCATCCCTTTGGTCTTATTGACATAAGAGATGTCATTTATAGTCTATCTCTTTCTATATATGGAAAGTCAAGAAATTCTCATCGAAACATCGAGAAATTGTGCATATAGAAAACTCTAAAGAAAGAAAAAAAGGAGACCCATGCCATGATTTTAAAATCTTTTCTATTTAGTAGTCTAAGTTTCTCGATGAGGATAATTAATTCGGTCGTTGTGGTCGGACTCTATTATGGATTTATGACCACATTCTCCATAGGTCCCTCTTAGATCTTCTTTCTCCAATCTTGGATTAGGGAAGAAGGAGATATTCGCGACTACTGGTGGGGTTTCATTATGGGGCAGCTCATGATCTTCATATCGATCTATTATCCACCTCTGTATCTATTCTTTCTTAGCTAAACGGGTGGAGGATCCACCCAATTT----ATATCATGGACTCAAAAAACGGATCCGAATTTGACTGAAATGCACGATCTTCACAGGTATCACTTTTCACGATACCTAAA------AGGTGGAATAGGGATTTTCGAACCATTTCCTATAAGAGAATGGTTTCCATTACTTTGAGAAATGGATTCTTATATCAAACTATAGCTATTGCATTAAATAAGAAAAGAAACTAATAGAAGTCGAAGACGCGGAATGGTAGTGAATAGAGAGAAAGATTCTTCTTATTTTCTTGTTCCTGAAAATATTCTATCTATCTCCTAGACGCCGTAGAGAATTGAGAATTTTCATGTCTTTCAATTCTCGTACTCGTAATTGGAAAGTTACGGAAGGAGACCCATCATTTTGCAATGAAAACAACATATAAAACTCTGGACAATTTCGAAATCAGGCCGAGCGTCTTAATACATATGCAAAAAAATTCATTATTGGCCCACCATTGATTAGAAGATTTAGCTTGTATGAATCGCTATTGGTTTGATACGAATAATGGCAATCGTTTCAGTATGTTAAGGATACAGATGTATCCACAATTCATTTAGAGTTACTTAATAGCCTATTTCTTATACCATATCTCTATCCCGTGAAATTCTCGAGCCGAAAGATGGATGCATATGCTGTGTTTCATTTTGCTAAATGATATCAATTAAATGGTGTATCAATTCCATAAATTGGATATAGCAATAAATAAATCAGCAAAATTCTTTCTAATATTTTAGATAGAAGAAACATTTCTTCTATCTAAAATATTAGAAAGAATGTACTCTTCTATCCAAATCTAATTTGCATCGATAAAATAAATCCAAATTCCAG-------CAGTAGATGAATAATTGCAAATTTTTGTGTGTACGAGATTAGAATAACTTCAAAATAACTGACATAATTTTTTATTTTTCCTGATCAGAAAAATAT------------------------------------ >ndhF:rpl32 >outgroup AGAAAAGAAATAGCAATTTTTA------------TATAAAAAAAAATTGTTTCCGATTCACCAAACCTATTCTTATCTCTTTCTAAAGGAAT---TCAAAAAACAAAATAAGAATAAGAGA--------------------AAAAATATTGAT----------------------------------------TTTATTAAAATACAAAAAAA-GATTGAATCATGTGACTTTTT-TTTTTTTTTTTATTTCTTTCTCTTAAA-ATAAAGGAGCTCTCTTGTTTCGTAATTGATTGATTGAATTCCAAC-----GAAAACCTATATTTATAGGAAATTTTCTAATATTGCTTACTTCATATAAAACGGAAATCCTAATGACTAGAATTCTCTAAGTTTTATAATCTCTTGTTTAAGAAATTAAGTATTTTTTTTTGATTGGAATTCAATTATGGAATACCGTTCTGAACTTAATTAATTATTTGAATTGGGATTGAATTTTACCCTCTTTTTATCTCCCCATTTTTTTTTATATGGGGGCTTATCCCCAAAACCATATATTTATATATGGAGTATA-TTTGATATGTAAATTGATTTAAATAGAA--AACCTTAAAAAACTCTTGTCTTATCCACATTAGACAGAATGAACTA-------------------------------------------------------------------AAAAAGAATTTCGAATTTCAGTATCTTTGAGTATCTAAGTATAACTACTAAGAAAAAACAAAAAGAAGGATTGATTTGCGGCAATAAATGTCTTTCACATACAACTAGAAAAAAGTAATCCCCCCTTTTGA >Lolium_multiflorum AGAAAAGAAATTGCAATTTTTACTTTAATTTTTCTATAAAATAAAATTGTTTCCGATTCACCAAACCAATTCTTATCTCTTTCTGAAGGAATAAATAAAAAGAATAAGCAAAAATGAAGAATGGGTTTAATTGATTAAATTAAAAAAGTTAATCAAATAACTTCGTTACCTAGTTATTACCTAAATAAGGATATTTATTAAAATAAAAAAAAAAGGTTGCATTTTTTTACTTTCTATTAATTTTGATATTTCTTTAAAACAAAGATAAAACAGCTCTCTTGTTTTGTAACTGATTAATCGAATTCCAATAAAAAGAAAACCCATGTTTATAATAAATTATCAAATAGTCGTTACTTCATATAGAACTGAAATCCTAATGACTATAATTACCTAAGTTTTAGAATGCCTTGTTTAAGAGAC------------------------------ATGGAATACTATTCTGAACTTAATTAACTATTT---TT--------ATTTTCCCTTCTTTTTATCCACTCGTCTT-----ATATAGGGGATAGGCTTCCATACCATATATCTATATATAGAGTATACTTTACTATATAAATATATATAAATAGATTTAAACGGAAAACCTTTCTATATATTCTATATTAT-TAAAACAAAGTATAAAATATATACGGAAAAAAATTTACTTAAATTCTTGTCTTATCTGGATAAGACAAGAATTTAAGTAAAAAATAATTCAGAATTTCAGTATCTTTCAATATCTGAGTATAAATACCAA----------------------------------AGATGTCTTTCACATACAACTAGAAAAAAGTAATTTCCT-TTTTGA >Lolium_perenne AGAAAAGAAATTGCAATTTTTACTTTAATTTTTCTATAAAAAAAAATTGTTTCCGATTCACCAAACCAATTCTTATCTCTTTCTGAAGGAATAAATAAAAAGAATAAGCAAAAATGAAGAATGGGTTTAATTAATTAAATTAAAAAAGTTAATCAAATAACTTCGTTACCTAGTTATTACCTAAATAAGGATATTTATTAAAATAAAAAAAAA-GGTTGCATTTTTTTACTTTCTATTAATTTTGATATTTCTTTAAAACAAAGATGAAACAGCTCTCTTGTTTTGTAACTGATTAATCGAATTCCAATAAAAAGAAAACCCATGTTTATAATAAATTATCAAATAGTCGTTACTTCATATAGAACTGAAATCCTAATGACTATAATTACCTAAGTTTTAGAATGCCTTGTTTAAGAGAC------------------------------ATGGAATACTATTCTGAACTTAATTAACTATTT---TT--------ATTTTCCCTTCTTTTTATCCACTCGTCTT-----ATATAGGGGATAGGCTTCCATACCATATATCTATATATAGAGTATACTTTACTATATAAATATATATAAATAGATTTAAACGGAAAACCTTTCTATATATTCTATATTAT-TAAAACAAAGTA-------------------------------------------------------------------AAAAATAATTCAGAATTTCAGTATCTTTCAATATCTGAGTATAAATACCAA----------------------------------AGATGTCTTTCACATACAACTAGAAAAAAGTAATTTCCT-TTTTGA >rpl32:trnL-UAG >outgroup ----------------CTGAATTGAACTATCCCAAAGAAATTACAATTATTTAATATGAATGAATTATTGGGATTAATTAATAAATGTACTTTTATGTGTATGTGTCGAATTTCTCGGTAAAATATTCTTAGAACGAATCTCTCCGTTATTCCGTTATATAGGACAAAAGTTTTTGGTATATTGTGTCCTCAGTATTCTTTGCCTATCAAAGAACTTTTTTTTTGATAATGGAATCCTCATA----AAAATGAGGATTCCATTATCAAAAGTAGACTATTCTTGTCTTGCAATAGGACTTACAACCTCTACCTATCTTATCTCTTATTCAAAATTCCCATATAAATGAGTTTAGGACTGGTAAATCATATTAATAAGAGCGTAAAGGCTTTCATTCTATAAATTTT----------TATAAAATACAAAATTCTTTTCTTT-----GTAGTTAATGATGAAA------TT--TTCTTTGTAGTTAATGATGAAA-------------------------TTTTCTTTGTAGTTAATGATGAAATTTTCTTTGTAGTTAA---------------------------------TGATGAA-ATTCTAATGTTCCTAAATTCTATGGCTTCTCCCAGTCTCGACGATTCGCGAGAAAATAACTATTATTCTTTTAAGTTAACTATTATTTCAAGTTA >Lolium_multiflorum AAGGTTTTGGAATAATATGAATTGACCTATCAAAAAATAATTCCAATTATTTAATATGAATAATTTGGATTAATTAATTAATTAATTAA--TGTACTTTTATGTGTCGAATTACTCAACACAAGATTCTTAGAACAAACCCCTCCTATAT-CCGCTATATGGAATAAAAGTTTT-GGTATACTGTGTGCTAAGTATTCTTG----ATCAATAAACTTTTCCT-----AATAGAATTCTCATAATAAAATATGAGAATTCTATTAGGAAAAGTGGAGTCTTCTTG-----CAATAAAACTTACCACTTACATCTATTTTTTC-------CAAAAT---------AATTGGTTTAAGGTTAGTAAATCCTATTAATAAGAGCATAAAGACTTTCATTCTATAAATTTT-TTCCATTTTATTTTGATTGAAAAAATGTAATTTTAGGGAGAAACTAATTAGAAAAAAAAA-TTAGTTCTATATTGCAACTTATAAAAGAGGAGTTCCAAGTCTTTCAAGCGGTGTTTCCATTAGGCAAAGCAAGAGTTTATTGTAAAAAAAA-TCGCAACGATACTACATA---GAAGTATATTTTAATGAAGACTCTAATGTTCCTAAATTTTATGGACTTTCCCAATCTCGACGATTCGCGAGATAATAGCTATTATTCTTTTAAGTTACCTATTATTTGAAGTTA >Lolium_perenne AAGGTTTTGGAATAATATGAATTGACCTATCAAAAAATAATTCCAATTATTTAATATGAATAATTTGGATTAATTAATTAATTAATTAA--TGTACTTTTATGTGTCGAATTACTCAACACAAGATTCTTAGAACAAACCCCTCCTATAT-CCGCTATATGGAATAAAAGTTTT-GGTATACTGTGTGCTAAGTATTCTTG----ATCAATAAACTTTTCCT-----AATAGAATTCTCATATTTTATTATGAGAATTCTATTAGGAAAAGTGGAGTCTTCTTG-----CAATAAAACTTACCACTTACATCTATTTTCTC-------CAAAAT---------AATTGGTTTAAGGTTAGTAAATCCTATTAATAAGAGCATAAAGACTTTCATTCTTTAAATTTTGTTCAATCAAAATAAAATGGAAAAAATTTAATTTTAGGGAGAAACTAATTAGAAAAAAAAAATTAGTTCTATATTGCAACTTATAAAAGAGGAGTTCCAAGTCTTTCAAGCGGTGTTTCCATTAGGCAAAGCAAGAGTTTATTGTAAAAAAAAATCGCAACGATACTACATAAACGAAGTATATTTTAATGAAGACTCTAATGTTCCTAAATTTTATGGACTTTCCCAATTTCGACGATTCGCGAGATAATAGCTATTATTCTTTTAAGTTACCTATTATTTGAAGTTA >trnL-UAG:ccsA >outgroup TCCCGAAAAAGGATACAATAGATTAGAAAATGGATTCAATTCGAAATTTCCAATTTTGTAATGGGACCTTATCCTT >Lolium_multiflorum TCTCGAAAAAGAATATAATAGATTATAAAATGGATTCAATTCGAAATTTACAATTTTGTAATGAGACCTTCCCCTT >Lolium_perenne TCTCGAAAAAGAATATAATAGATTATAAAATGGATTCAATTCGAAATTTACAATTTTGTAATGAGACCTTCCCCTT >ccsA:ndhD >outgroup TACATAACATAAAACCTTCCTTTTATAAAGGTTTTTTCCTTTTTTGTTTGATTTGAGAACCCCTTGAACGTCTTTTCAAAGGGTTCTCCAAAATTCGAGATAGATCTAATTAGACTTTTTTACTTTTTAGTTTTCTTAATTTTTTCTTTTTTCCATTATGGAATATAGTGCGGACTAGTTAAAAAAATTAAAAAAACTAAATC >Lolium_multiflorum TAGATAAAAGAAAACCCT----TTATGAAGGGTTTT--CTTTTATGTTTTATTTGAGAACCCCTTGAACGCCTTATCAAAGGGTTCTCAAAAATTCAAGATAGATCTAATTAGACTTCCTCATTAATAGACCGGACTGGTAAAAAAC-------------------------------------------------------- >Lolium_perenne TAGATAAAAGAAAACCCT----TTATGAAGGGTTTT--CTTTTATGTTTTATTTGAGAACCCCTTGAACGCCTTATCAAAGGGTTCTCAAAAATTCAAGATAGATCTAATTAGACTTCCTCATTAATAGACCGGACTGGTAAAAAAC-------------------------------------------------------- >ndhD:psaC >outgroup ATAAAGTAATAAAGACAAGATATGTTTTGACCAGAAAAGCCCATGCTCGGATTATTTCGAGCACAGGCTTCTTCTTCGGTAAAGAGGAATCAGACGATTCAAGTGGAGTTTTTTGTAACGTA >Lolium_multiflorum ATAAAGTGGTAAAGACAAGATACGTTTTGACCAGAAAAGCCCGTGCTCG-ATTATTTCGAGCACAGGCTTCTTC---GGTAAAGAGGAATCAGACGATTCAAATGAAGTTTTTTGTAACGTA >Lolium_perenne ATTAAGTGGTAAAGACAAGATACGTTTTGACCAGAAAAGCCCGTGCTCG-ATTATTTCGAGCACAGGCTTCTTC---GGTAAAGAGGAATCAGACGATTCAAATGAAGTTTTTTGTAACGTA >psaC:ndhE >outgroup GGATCTCTAAATTTGCCTTTTCAACATAAGAATTTTCGATCTGGTAAAAATAAAATTAGTACTATATAAATTAGATGTATTGTATACACCAGACGAAGCAATGGTTTATCCAAACTTTAACAAATAATGCAATATTTCTTAATCTGTTTGTGAGAAAGCGTGAAAAGAGCCAAGAGACTTGAATTTAAGGCTTCAACAGTCATAATTAGACGAATTCTACATACTATATTGAATTAGCCAATAAATTGGCTATCATCTTTTCAATATAAATTATTGCAATATTCAAATTGCAATATCAATGAATTGCAAAAATGCAATATTCAATAAGTAAAAAAGAATACTCTCAAATAACCTACTCAAAA--AATGGATATTATTAAATACTAATAAGAAAATAAGAT--------------TCGATTTCTATTCATCTTAATGTTCCGTATTATTATATATGCGCCTTTGTTTAGAGGATTCTATGT--------------------------------- >Lolium_multiflorum GGATCTATAAATTTTTCTTTTCAACATAAAAATTTTCGATCTGGTAAAAATAAAATTAGTATTATATGAGTAATATGTATTGTAGACACCAGACGAAGCAATGGTTTATCCAAACTTCAA-AAATAGATTACTATTTTTGAATCCGTTTGTGAGAAAGCGTGAAAAGAGCCAAGAGACTTGAATTTTTGACTTCAACAATCAGAATTATACTAATTGTACATATGAATTCGAATTAGCCAATAAATTGGCTATCCTCTTTTCAATATAAATTATTGCAATATTGAAATTGCAATATCAATGAATTACAAAAATTC--CTTTAAGT---TAAAAAAGAATACTATGCAATAACCTACTTAAAGAGAATTTATATTCTCAAATAATACTAAGAAAATACTATAGTATAGTAT-----TGATTTCTATTCATCTTAATATTCCATATTGTTATATGTGCGCCTTTGTTTAGAGGATTGTATGTCTACTTAATTAAAAAGTCCAATTATTCCATAGT >Lolium_perenne GGATCTATAAATTTTTCTTTTCAACATAAAAATTTTCGATCTGGTAAAAATAAAATTAGTATTATATGAGTAATATGTATTGTAGACACCAGACGAAGCAATGGTTTATCCAAACTTCAA-AAATAGATTACTATTTTTGAATCCGTTTGTGAGAAAGCGTGAAAAGAGCCAAGAGACTTGAATTTTTGACTTCAACAATCAGAATTATACTAATTGTACATATGAATTCGAATTAGCCAATAAATTGGCTATCCTCTTTTCAATATAAATTATTGCAATATTTAAATTGCAATATCAATGAATTACAAAAATTC--CTTTAAGT---TAAAAAAGAATACTATGCAATAACCTACTTAAAGAGAATTTATATTCTCAAATAATACTAAGAAAATACTATAGTATAGTATAGTATTGATTTCTATTCATCTTAATATTCCATATTGTTATATGTGCGCCTTTGTTTAGAGGATTGTATGTCTACTTAATTAAAAAGTCCAATTATTCCATAGT >ndhE:ndhG >outgroup AACTAACTCCTTATCAATCTCGATTCATTTCAATATGAAGACAAGAATTGAACCGATTCCATTAATTAGAATAGAACAATTACGCAACAAAAGAGAAAAGAGGGTATTTGTTGTATTGGCAGTAGATGGGTTTTACTAAATCAAAATTGTGATTCTTTAGTTATTTATTTTATATTTGAAATTATAAGAATTTTGACTCATTCTAAGTATTTA >Lolium_multiflorum AATTAACTCCTTATCAATCCCGATTCATTTCAATATGAGGACAAGAATTGAACCGATTTAATTAATTACAATAGAACAATTACACAACAAAAGAGAAAAGAAAGAAGTTATT-TGTTGGCGGTAGATGGTTTTTACTAAATCAAAATTGTGATTCTTTAGTTATTTATTTTAGATTTGCAATTCTTATAATTTTTACTCTTTCTAAGTTTTC- >Lolium_perenne AATTAACTCCTTATCAATCCCGATTCATTTCAATATGAGGACAAGAATTGAACCGATTTAATTAATTACAATAGAACAATTACACAACAAAAGAGAAAAGAAAGAAGTTATT-TGTTGGCGGTAGATGGTTTTTACTAAATCAAAATTGTGATTCTTTAGTTATTTATTTTAGATTTGCAATTCTTATAATTTTTACTCTTTCTAAGTTTTC- >ndhG:ndhI >outgroup ATGGATAAGAAGAAATTTAGA--GTATAAAATTTTTCATGAACTGAATAAAACTAAAAGATTCAAGGAAGGAAAAACGTATTCGGATATTTTTTTG-TATATGTATATTTGTATATGTATATAAGTTGTTAAGCAGTAGTTATTATTTTTTCGTTATAGTTAGTAAAAATGGATTTTTCTAACAAAAAAAAATCCTAATAC >Lolium_multiflorum ATGGATAAAAAGAAATTAAAATAGTATAAAATTTTTCATGAACTGACTAAAACTAAAGGATTCCAGGAAGTAAAAAGGGATTAGGATATTTTTATAACAAAAAAAAATATGAGT--------------------------------------------------------------------------------------- >Lolium_perenne ATGGATAAAAAGAAATTAAAATAGTATAAAATTTTTCATGAACTGACTAAAACTAAAGGATTCCAGGAAGTAAAAAGGGATTAGGATATTTTTATAACAAAAAAAAATATGAGT--------------------------------------------------------------------------------------- >ndhI:ndhA >outgroup TTCTAAATATATATATATGAAAAAGATATGTTTCTTTCTCTTGTTTGAGAGAACTTTTGTGTTGAAAATATTCTTACTGTTATTGTATTAGCTTAT >Lolium_multiflorum --TTCATTCTATATCTATGAAAAAGATATGTTTCTTTCTCTTGTTTGACAGAGCCTTTGTGTTGAAAATATTCTTACTGTTATTGTATTATTTTCT >Lolium_perenne --TTCATTCTATATCTATGAAAAAGATATGTTTCTTTCTCTTGTTTGACAGAGCCTTTGTGTTGAAAATATTCTTACTGTTATTGTATTATTTTCT >ndhH:rps15 >outgroup TCCTTGTTCTTATTCTTTATTCCATGAAAATGGATTATTCGAGCTTTTCCTGGGAGTATGGCATGGGTTATATCCTTGTTCTTA-TTCTTTATTCCATGAAAATGGATTATTCCATGAATTCCTCAAAACGAGGCTCATCAAAATGCAAAATCTAAGACTACTATAAGACTACTAAATAAAATATGAAAAAAATTCGAACGATTAAA >Lolium_multiflorum ------------------------------------------------------------------------------TCCTTAATTCATTATTCCATGAAAATGGATTATTCCATGAATTCCTCAAAACGAGGCTCATCAAAATGCAAAATCTAAGACTACTATAAGACTACTAAG-AAAATAAGAAAAAAATTAGAACGATTAAA >Lolium_perenne ------------------------------------------------------------------------------TCCTTAATTCATTATTCCATGAAAATGGATTATTCCATGAATTCCTCAAAACGAGGCTCATCAAAATGCAAAATCTAAGACTACTATAAGACTACTAAG-AAAATAAGAAAAAAATTAGAACGATTAAA >rps15:trnN-GUU >outgroup AATCAAAAAATTGTTCTACCTCCTTTCTTTTTCATGTATTTTTCTGATCAGGAAAAATAAAAAATTATGTCAGTTATTTTGAAGTTATTCTAATCTCGTACACACAAAAATTTGCAATTATTCATCTACTGCTGGAATCTGGAATTTAGATTTATTTTATCGATGCAAATTGGATTTGGATAGAAGGATACATTCTTT----TATTTTAGATAGAAGAAACATTTCTTCTATCTAAAATA----AAAGAATTTTGCTGATTTATTTATTGCTATATCCAATTTTTAGAATGGATATACCATTTAATTGATATCATTTAGCAAAATGAAACACAGCATATGCATCCATCTTTCGGCTCGAGAATTTCACGGGATAGAGATATAGTATAAGAAATAGGCTATTAAGTAACTCTAAATGAATTGTGGATACATCTGTATCCTTAACATACTGAAAGGACTGCCATTATTCGTATCAAACCAATAGCGATTCATAAAAGCTAAATCTTGTAATCAATGGTGGGCCAATAATGAATTTTTTTGCATATGTATTAAGACGCTTGGTCTGATTTCGAAATTGTCCAGAGTTTTTTATGTTGTTTTCATTGCAAAATGATGGATCTCCTTCCGTAACTTTCCAATTACGAGTACGAGAATTGAAAGACATGAAAATTCTCAATTCTCTACGGCGTCTAGGAGATAGATAGAATATTTTCAGGAACAAGAAAATCAGAAGAATCTTTTTCTCTATTCACTACCATTCCGCGTCTTCGACTTCTATTAGTTTCTTTTCTTCTTTAATGCAATAGCTATAGTTTGATATA-GAATCCATTTCTCAAAGTAATGGAAACCATTCTCTTATAGGAAATGGTTCGAAAATCGCTATTCCACCTTTTAGGTTTAGGTATCGTGAAAAGTGATACCTGTGAAGATCGTGGATTTCAGTCACACTCAGATCCGTTTTTTGAGTCCATGATATAACCAAATTGGATGGATCTTCCACCCGTTTAGCTAAGAAAGAATAGATGCAGAGGTGGATAATAGATCGATATGAAGATCATGAGCTGCCCCATAATGAAACC--GCCAATAGTCGCGAATATCTCCTTCTTCCCTAACCCAAGATTGGAGAAAGAAGATCTAAGAGGGACCTATGGAGAATGTGGTCAGAAATCCATAATAGAGTCCGACCTCAACGACCGAATTAATTATCCTCATCGAGAAACTTAGACTACTAAGTAGAAAAAATTAGAAAATCATGGCATGGGTCTCCTTTTTTTCTTTCTTTAGAGTTTTCTATATGCACAATTTCTCGATGTTTCGATGAGAATTTCTTGACTTTCCATATATAGAAAGAGATAGACTATAAATGACATCTCTTATGTCAATAAGCCCAAAGGGATGGATATTAAATGATAGGAAGTGCTAGGAAGTGAAATAGAATGAAATAGAGCCACTTTGGGCTTCCCTATGAAATGAGGCATGGAACGGAGCCACTACGAAGAAATTCCGGGAGTTACGAAAGAAGCTTCGGACTCATATTGTTCACGGGTTGAGAGCGGGAGTTGAACTCTAGGAGGTCGAATCTCCCCTTGT >Lolium_multiflorum ------------------------------------TATTTTTCTGATCAGGAAAAATAAAAAATTATGTCAGTTATTTTGAAGTTATTCTAATCTCGTACACACAAAAATTTGCAATTATTCATCTACTGCTGGAATTTGGA-------TTTATTTTATCGATGCAAATTAGATTTGGATAGAAGAGTACATTCTTTCTAATATTTTAGATAGAAGAAACATTTCTTCTATCTAAAATATTAGAAAGAATTTTGCTGATTTATTTATTGCTATATCCAATTTATGGAATTGATACACCATTTAATTGATATCATTTAGCAAAATGAAACACAGCATATGCATCCATCTTTCGGCTCGAGAATTTCACGGGATAGAGATATGGTATAAGAAATAGGCTATTAAGTAACTCTAAATGAATTGTGGATACATCTGTATCCTTAACATACTGAAACGATTGCCATTATTCGTATCAAACCAATAGCGATTCATACAAGCTAAATCTTCTAATCAATGGTGGGCCAATAATGAATTTTTTTGCATATGTATTAAGACGCTCGGCCTGATTTCGAAATTGTCCAGAGTTTTATATGTTGTTTTCATTGCAAAATGATGGGTCTCCTTCCGTAACTTTCCAATTACGAGTACGAGAATTGAAAGACATGAAAATTCTCAATTCTCTACGGCGTCTAGGAGATAGATAGAATATTTTCAGGAACAAGAAAATAAGAAGAATCTTTCTCTCTATTCACTACCATTCCGCGTCTTCGACTTCTATTAGTTTCTTTTCTTATTTAATGCAATAGCTATAGTTTGATATAAGAATCCATTTCTCAAAGTAATGGAAACCATTCTCTTATAGGAAATGGTTCGAAAATCCCTATTCCACCTTTTAGGT------ATCGTGAAAAGTGATACCTGTGAAGATCGTGCATTTCAGTCAAATTCGGATCCGTTTTTTGAGTCCATGATATAA----ATTGGGTGGATCCTCCACCCGTTTAGCTAAGAAAGAATAGATACAGAGGTGGATAATAGATCGATATGAAGATCATGAGCTGCCCCATAATGAAACCCCACCAGTAGTCGCGAATATCTCCTTCTTCCCTAATCCAAGATTGGAGAAAGAAGATCTAAGAGGGACCTATGGAGAATGTGGTCATAAATCCATAATAGAGTCCGACCACAACGACCGAATTAATTATCCTCATCGAGAAACTTAGACTACTAAATAGAAAAGATTTTAAAATCATGGCATGGGTCTCCTTTTTTTCTTTCTTTAGAGTTTTCTATATGCACAATTTCTCGATGTTTCGATGAGAATTTCTTGACTTTCCATATATAGAAAGAGATAGACTATAAATGACATCTCTTATGTCAATAAGACCAAAGGGATGGATATTAAATGATAGGAAGTGCTAGGAAGTGAAATAGAATGAAATAGAGCCACTTTTGGCTTCCCTATGAAATGAGGCATGGAACGGAGCCACTACGAAGAAATTCTGGGAGTTACGAAAGAAGCTTCGGACTCATATTGTTCATGGGTTGAGAACGGGAGTTGAACTCTAAGAGGTCGAATCCCCCCTTGT >Lolium_perenne ------------------------------------TATTTTTCTGATCAGGAAAAATAAAAAATTATGTCAGTTATTTTGAAGTTATTCTAATCTCGTACACACAAAAATTTGCAATTATTCATCTACTGCTGGAATTTGGA-------TTTATTTTATCGATGCAAATTAGATTTGGATAGAAGAGTACATTCTTTCTAATATTTTAGATAGAAGAAATGTTTCTTCTATCTAAAATATTAGAAAGAATTTTGCTGATTTATTTATTGCTATATCCAATTTATGGAATTGATACACCATTTAATTGATATCATTTAGCAAAATGAAACACAGCATATGCATCCATCTTTCGGCTCGAGAATTTCACGGGATAGAGATATGGTATAAGAAATAGGCTATTAAGTAACTCTAAATGAATTGTGGATACATCTGTATCCTTAACATACTGAAACGATTGCCATTATTCGTATCAAACCAATAGCGATTCATACAAGCTAAATCTTCTAATCAATGGTGGGCCAATAATGAATTTTTTTGCATATGTATTAAGACGCTCGGCCTGATTTCGAAATTGTCCAGAGTTTTATATGTTGTTTTCATTGCAAAATGATGGGTCTCCTTCCGTAACTTTCCAATTACGAGTACGAGAATTGAAAGACATGAAAATTCTCAATTCTCTACGGCGTCTAGGAGATAGATAGAATATTTTCAGGAACAAGAAAATAAGAAGAATCTTTCTCTCTATTCACTACCATTCCGCGTCTTCGACTTCTATTAGTTTCTTTTCTTATTTAATGCAATAGCTATAGTTTGATATAAGAATCCATTTCTCAAAGTAATGGAAACCATTCTCTTATAGGAAATGGTTCGAAAATCCCTATTCCACCTTTTAGGT------ATCGTGAAAAGTGATACCTGTGAAGATCGTGCATTTCAGTCAAATTCGGATCCGTTTTTTGAGTCCATGATATAA----ATTGGGTGGATCCTCCACCCGTTTAGCTAAGAAAGAATAGATACAGAGGTGGATAATAGATCGATATGAAGATCATGAGCTGCCCCATAATGAAACCCCACCAGTAGTCGCGAATATCTCCTTCTTCCCTAATCCAAGATTGGAGAAAGAAGATCTAAGAGGGACCTATGGAGAATGTGGTCATAAATCCATAATAGAGTCCGACCACAACGACCGAATTAATTATCCTCATCGAGAAACTTAGACTACTAAATAGAAAAGATTTTAAAATCATGGCATGGGTCTCCTTTTTTTCTTTCTTTAGAGTTTTCTATATGCACAATTTCTCGATGTTTCGATGAGAATTTCTTGACTTTCCATATATAGAAAGAGATAGACTATAAATGACATCTCTTATGTCAATAAGACCAAAGGGATGGATATTAAATGATAGGAAGTGCTAGGAAGTGAAATAGAATGAAATAGAGCCACTTTTGGCTTCCCTATGAAATGAGGCATGGAACGGAGCCACTACGAAGAAATTCTGGGAGTTACGAAAGAAGCTTCGGACTCATATTGTTCATGGGTTGAGAACGGGAGTTGAACTCTAAGAGGTCGAATCCCCCCTTGT >trnN-GUU:trnR-ACG >outgroup TTTGATTCATTCTTTAATGTAAGAATAAAGAATTGAATTAAAAGGCTTGCTTTGACCCTTAGGAGTAGGTAACCCGTTCGCTATCCTTGTTTCTAT------TGCATTCTATCTCATCGTATCACATTCTGTTCTACGATTCCACTTCGACAAAAGGAAAGAGCATACCCAAGTTCAATAGCTTTACGTCCGCTATTCCGATCATGATTTTCCTACCCTCAGGGAGAAAGTAAAGGTCCTTCCCCCTTTGGAAGGCTG >Lolium_multiflorum -TTGATTCATTCTTTAATGTAAGAATAAAGAATTGAATTAAAGGGCTTGCTTTGACCCTTAGGAGTAGGTAACCCGTTCGCTATCCTTATTTCTATTTCTATTGCATTCTATCTCATCGTATCACATTGTGCTCTACGATTCCACTTCGACAAAAGGAAAGAGCATACCTAAGTTCAATAGCTTTACGTCCGCTATCCCGATCATGATTT------CCTCAGGGGGAAAGTAAAGGCCCTTCCCCCTTTGGAAGGCTG >Lolium_perenne TTTGATTCATTCTTTAATGTAAGAATAAAGAATTGAATTAAAGGGCTTGCTTTGACCCTTAGGAGTAGGTAACCCGTTCGCTATCCTTATTTCTATTTCTATTGCATTCTATCTCATCGTATCACATTGTGCTCTACGATTCCACTTCGACAAAAGGAAAGAGCATACCTAAGTTCAATAGCTTTACGTCCGCTATCCCGATCATGATTT------CCTCAGGGGGAAAGTAAAGGCCCTTCCCCCTTTGGAAGGCTG >trnV-GAC:rps7 >outgroup CCCCGCCCCATCGAGAAAGAGAATTAACGAATCCTAAGGCAAAGGGGCGAGAAACTCAAGGCCAGGCCACTCTTCTTCCGGGCTTTCTTTCCGCACTATTATGGACAGTCAAATAATGGGAAAAATTGGATTCAATTGTCAACCGGTCCTATCGAAAATAGGATTGACTATGGATTCGAGCCATAGCACATGGTTTCATAAAATCTGTACGATTTTCCCGATCTAAATCGAGCGGGTTTCCATGAAGAAGATCTTGTTCAGCATGTTCTATTCGATACTGGTAGGAGAAGAACCCGACTCGGTATTCTTAAAAAAAGAGGGGAAGCAGAACCAAGTCAAGATGATATGGGTCGCCCCTTCTTCTTGCGCCAAAGATCTTACCATTTCCGAAGGAACTGGGGCTACATTTCTTTTCAATTTCCATTCAAGAGTTTCTATCTGTTTCCACGCCCTTTTTTTGAGACCTCGAAACATGAAATGGACAAATTCCTTCTCTTAGGAACACATACAAGAAAAAGGATAATGGTAGCCCTCCCATTAACTACTTCATTTTCATTTATGAATTTCATAGTAATAGAAATCCATGTCCTACCGAGACAGAATTTCGAACTTGCTATCCTCTTGCCTAATAGGCAAAGATTGACCTCTGTAGAAAGACTGATTCATTCGGATC-----GATATGAGGACCCAACTCCGTTGCATTGCCAGAATCCATGTTCCATATTTGAAGCGGGTTGACCTCTGTGCTTCTCTCATGGTACAATCCTCTTCCTGCTGAGCCCCCTTTCTCCTCGGTCCACAGAGAAAAAATGTAGGACTGGTGCCGACAGTTCATCACGGAAGAAAGAACTCACAGAGCCGGGATCGCTAACTAATAGAAACTAATAGAATAGTACTACTAACTAATACTAATATATAGAAATAGATATCTAGAAATAGAAACGAACTAATATATAGATAATCGAAATTGAAAAGAACTGTCTTTTCTGTATACTTTCCCCGTTCTATTGCTACCGCGGTTCTTATGCAATCGATCGGATCATATAGATATCCCTTCAACACAACATAGGTCATCGAAAGGATCTCGGACGACTCACCAAAGCACGAAAGCCAGTTAGAAAATGGATTCCTATTTGAAGAGTGCCTAACCGCATGGATAAGCTCACATTAACCCGTCAATTTTGGATCCAATTCGGGATTTTTCTTGGGAAGTTTCGGGAAGAAATTGGAATGGAATAATATCGATTCATACAGAGGAAAAAGTTCTCTATTGATGCAAACGCTGTACCTAGAGGATAGGGATAGAGGAAGAGGGAAAAATCGAAATGAAATAAATAAAGAATAAAGCCAAAAAAATAAGTCGAAGATAGAAGAGCCTAGATTCAAAATGAAGAAATGGAAACTCGAAAAGGATCCTTCTGATTCTCAAAGAATGAGGGGCAAGGGGATTGATACCGAGAAAGATTTCTTCTTATTATAAGA-GTGATTTGATCCGCATATGTTTGGTAAAAGAACAATCTTCTCCTTTAATCA-----TAAAT--------------------GGAAAGTGTTCAATTAGAACATGAAAACGTGACTCAATTGGTCTTAGTTAGTCTTCGGGACGGAGTGGAAGAAGGGCGGAGACTCTCGAACGAGGAAAAGGATCCCTTCGAAAGAATTGAACGAGGAGCCGTATGAGGTGAAAATCTCATGTACGGTTCTGTAGAGGGACAGTAAGGATGACTTATCTGTCGACTTTTCCACTATCAACCCCAAAAAACCCAACTCTGCCTTACGTAAAGTTGCCAGAGTACGATTAACCTCTGGATTTGAAATCACTGCTTATATACCTGGTATTGGCCATAATTTACAAGAACACTCTGTAGTATTAGTAAGAGGAGGAAGGGTTAAGGATTTACCCGGTGTGAGATATCGCATTATTCGAGGAACCCTAGATGCTGTCGCAGTAAAGAATCGTCAACAAGGGCGTTCTAGTGCGTTGTAGATTCTTATCCAAGACTTGTATCATTTGATGATGCCATGTGAATCGCTAGAAACATGTGAAGTGTATGGCTAACCCAATAACGAAAGTTTCGTAAGGGGACTGGAGCAGGCTACCATGAGACAAAAGATCTTCTTTCTAAAGAGATTTGATTCGGAACTCTTATATGTCCAAGGTCAATATGGAAATTCTTTCAGAGGTTTTCCCTTACTTTGTCCGTGTCAACAAACAATTCGA-----CTCGACTTTTTCAGAACAGGTCCGAGTCAAATAGCAATGATTCGAAGCACTTCTTTTTCCATTACACTATTTCGGAAACCTAAGGACTCGATCGTATGGATATGGAAAATACAGGATTTCCGGTCCTAGCGGGAAAAGGAGGGAAACGGATACTCAATTTAAAGTGAGTAAACAGAATTCCATATTCGATCTCATAGATCCCTATAGAATTCTGTGGAAAGCCGTATTCGATGAAAGTCGTATGTACGGCTTGGAGGGAGATCTTTCCTATCTTTCGAGATCCACCCTACAATATGGGGTCAAAAAGCCAAAAAAATAAGTGATTCGTTTTTAGCCCTTATAAAAAGAAAACGGATTCTTGAACCTCTTTCACGCTC >Lolium_multiflorum CCCCGTCCCATCGAGAAAGAGAATTAACGAATCCTAAGGCAAAGGGGCGAGAAACTCAAGGCCA-----CTCTTCCTCCGGGCTTTCTTTCCGCACTATTATGGATAGTCAAATAATGGGAAAAATTGGATTCAATTGTCAACCGGTCCTATCGAAAATAGGATTGACTATGGATTCGAGCCATCGCACATGGTTTCATAAAATCTGTACGATTTTCCCGATCTAAATCGAGCAGGTTTCCATGAAGAAGATCTTGTTCAGCATGTTCTATTCGATACTGGCAGGAGAAGAACCCGACTCGGTATTCTTAAAAAAAGAGGGGAAGCAGAACCAAGTCAAGATGCTATGGGTCGCCCCTTCTTCTTGCGCCAAAGATCTTACCATTTCCGAAGGAACTGGGGCTACATTTCTTTTCCATTTCCATTCAAGAGTTTCTATCTGTTTCCACGCCCTTTTTTTGAGACCTCGAAACATCA---GGACAAATTACTTCTCTTAGGAACACATACAAGAAAAAGGATAACGGTAGCCCTCCCATTAACTACTTCATTTTCATTTATGAATTTCATAGTAATAGAAATCTATGTCCTACCGAGACAGAATTTAGAACTTGCTATCCTCTTGCCTAATAGGCACAAATTTACCTCTGTAGAAAGACTGATTCATTCGGATCAGATCGATATGAGGACCCAACTCCCTTGCATTGCCAGAATCCATGTTCGATATTTGAAGCGGGTTGACCTCCGTGCTTCTCTCATGGTACAATCCTCTTCCTGCTGAGCCCCCTTTCTCCTCGGT-----------------------------------------------------------------------------------AACTAATAGAATAGTACTACTAACTAATACTACTAACTAATA-------------------------CTAATATATAGATAATCAAAATTGAAAAGAACTGTCTTTTCTGTATACTTTCCCCGTTCTATTGCTACCGCGGGTCTTATGCAATCGATCGGATCATATAGATATCCCTTCAACACAACATAGGTCATCGAAAAGATCTCGGACGACTCACCAAAGCACGAAAGCCAGTTAGAAAATGGATTCCTATTTGAAGAGCGCCTAACCGCATGGATAAGCTCACATTAACCCGTCAATTTTGGATCCAATTCGGGATTTTTCTTGGGAAGTGTCGGGAAGAAATTGGAATGGAATAATATAGATTCATACAGAGGAAAAGGTTCTCTATTGATGCAAACGCTGTACCTAGAGGATAG------AGGAAGAGGGAAAAATCGAAATGAAATAAATAAAGAATAAAGCAAAAAAAATAAGTCGAAGATAGAAGAGCCCAGATTCCAAATGAAGAAATGGAAACTCGAAAAGGATCCTTCTGATTCTCAAAGAATGAGGGGCAAGGGGATTGATACCGAGAAATATTTCTTCTTATTATAAGACGTTATTTGATCCGCATATGTTTGGTAAAAGAACAATCTTCTCCTTTAATCATATCATAAAT--------------------GGAAAGTATTCAATTAGAACATGAAAACGTGACTCAATTGGTCTTAGTTAGTCTTCGGGACGGAGTGGAAGAAGGGCGGAGACTCTCGAACGAGGAAAAGGATCCCTTCGAAAGAATTGACCGAGGAGCCGTATGAGGTGAAAATCTCATGTACGGTTCTGTAAAGGGACAGTAAGGGTGACTTATCTGTCGACTTTTCCACTATCAACCCCAAAAAACCCAACTCTGCCTTACGTAAAGTTGCCAGAGTACGATTAACCTCTGGATTTGAAATCACTGCTTATATACCTGGTATTGGCCATAATTTACAAGAACATTCTGTAGTATTAGTAAGAGGAGGAAGGGTTAAGGATTTACCCGGTGTGAGATATCGCATTATTCGAGGAACCCTAGATGCTGTCGCAGTAAAGAATCGTCAACAAGGGCGTTCTAGTGCGTTGTAGATTCTTATCCAAGACTTGTATCATTTGATGATGCCATGTGAATCGCTAGAAACATGTGAAGTGTATGGCTAACCCAATAACGAAAGTTTCGTAAGGGGACTGGAGCAGGCTACCATGAGACAAAAGATCCTCTTTCTAAAGAGATTCGATTCGGAACTCTTATATGTCCAAGGTCAATATGGAAATTCTTTCAGAGGTTTTCCCTTACTTTGTCCGTGTCAACAAACAATTCGAAATACCTCGACTTTTTCAGAACAGGTCCGAGTCAAATAGCAATGATTCGAAGCACTTCTTTTTCCATTACACTATTTCGGAAACCTAAGGACTCGATCGTATGGATATGGAAAATACAGGATTTCCGATCCTAGCGGGAAAAGGAGGGAAACGGATACTCAATTTAAAGTGAGTAAACAGAATTCCATACTCGATCTCATAGATCCCTATAGAATTCTGTGGAAAGCCGTATTCGATTAAAGTCGTATGTACGGCTTGGAGGGAGATCTTTCCTATCTTTCGAGATCCACCCTACAATATGGGGTCAAAAAGCCAAAAAAATAAGTGATT-----TTAGCCCTTATAAAAAGAAAACGGATTCTTGAACCTCTTTCACGCTC >Lolium_perenne CCCCGTCCCATCGAGAAAGAGAATTAACGAATCCTAAGGCAAAGGGGCGAGAAACTCAAGGCCA-----CTCTTCCTCCGGGCTTTCTTTCCGCACTATTATGGATAGTCAAATAATGGGAAAAATTGGATTCAATTGTCAACCGGTCCTATCGAAAATAGGATTGACTATGGATTCGAGCCATCGCACATGGTTTCATAAAATCTGTACGATTTTCCCGATCTAAATCGAGCAGGTTTCCATGAAGAAGATCTTGTTCAGCATGTTCTATTCGATACTGGCAGGAGAAGAACCCGACTCGGTATTCTTAAAAAAAGAGGGGAAGCAGAACCAAGTCAAGATGCTATGGGTCGCCCCTTCTTCTTGCGCCAAAGATCTTACCATTTCCGAAGGAACTGGGGCTACATTTCTTTTCCATTTCCATTCAAGAGTTTCTATCTGTTTCCACGCCCTTTTTTTGAGACCTCGAAACATCA---GGACAAATTACTTCTCTTAGGAACACATACAAGAAAAAGGATAACGGTAGCCCTCCCATTAACTACTTCATTTTCATTTATGAATTTCATAGTAATAGAAATCTATGTCCTACCGAGACAGAATTTAGAACTTGCTATCCTCTTGCCTAATAGGCACAAATTTACCTCTGTAGAAAGACTGATTCATTCGGATCAGATCGATATGAGGACCCAACTCCCTTGCATTGCCAGAATCCATGTTCGATATTTGAAGCGGGTTGACCTCCGTGCTTCTCTCATGGTACAATCCTCTTCCTGCTGAGCCCCCTTTCTCCTCGGT-----------------------------------------------------------------------------------AACTAATAGAATAGTACTACTAACTAATACTACTAACTAATA-------------------------CTAATATATAGATAATCAAAATTGAAAAGAACTGTCTTTTCTGTATACTTTCCCCGTTCTATTGCTACCGCGGGTCTTATGCAATCGATCGGATCATATAGATATCCCTTCAACACAACATAGGTCATCGAAAAGATCTCGGACGACTCACCAAAGCACGAAAGCCAGTTAGAAAATGGATTCCTATTTGAAGAGCGCCTAACCGCATGGATAAGCTCACATTAACCCGTCAATTTTGGATCCAATTCGGGATTTTTCTTGGGAAGTGTCGGGAAGAAATTGGAATGGAATAATATAGATTCATACAGAGGAAAAGGTTCTCTATTGATGCAAACGCTGTACCTAGAGGATAG------AGGAAGAGGGAAAAATCGAAATGAAATAAATAAAGAATAAAGCAAAAAAAATAAGTCGAAGATAGAAGAGCCCAGATTCCAAATGAAGAAATGGAAACTCGAAAAGGATCCTTCTGATTCTCAAAGAATGAGGGGCAAGGGGATTGATACCGAGAAATATTTCTTCTTATTATAAGACGTTATTTGATCCGCATATGTTTGGTAAAAGAACAATCTTCTCCTTTAATCATATCATAAATGGTTTAATCATATCATAAATGGAAAGTATTCAATTAGAACATGAAAACGTGACTCAATTGGTCTTAGTTAGTCTTCGGGACGGAGTGGAAGAAGGGCGGAGACTCTCGAACGAGGAAAAGGATCCCTTCGAAAGAATTGACCGAGGAGCCGTATGAGGTGAAAATCTCATGTACGGTTCTGTAAAGGGACAGTAAGGGTGACTTATCTGTCGACTTTTCCACTATCAACCCCAAAAAACCCAACTCTGCCTTACGTAAAGTTGCCAGAGTACGATTAACCTCTGGATTTGAAATCACTGCTTATATACCTGGTATTGGCCATAATTTACAAGAACATTCTGTAGTATTAGTAAGAGGAGGAAGGGTTAAGGATTTACCCGGTGTGAGATATCGCATTATTCGAGGAACCCTAGATGCTGTCGCAGTAAAGAATCGTCAACAAGGGCGTTCTAGTGCGTTGTAGATTCTTATCCAAGACTTGTATCATTTGATGATGCCATGTGAATCGCTAGAAACATGTGAAGTGTATGGCTAACCCAATAACGAAAGTTTCGTAAGGGGACTGGAGCAGGCTACCATGAGACAAAAGATCCTCTTTCTAAAGAGATTCGATTCGGAACTCTTATATGTCCAAGGTCAATATGGAAATTCTTTCAGAGGTTTTCCCTTACTTTGTCCGTGTCAACAAACAATTCGAAATACCTCGACTTTTTCAGAACAGGTCCGAGTCAAATAGCAATGATTCGAAGCACTTCTTTTTCCATTACACTATTTCGGAAACCTAAGGACTCGATCGTATGGATATGGAAAATACAGGATTTCCGATCCTAGCGGGAAAAGGAGGGAAACGGATACTCAATTTAAAGTGAGTAAACAGAATTCCATACTCGATCTCATAGATCCCTATAGAATTCTGTGGAAAGCCGTATTCGATTAAAGTCGTATGTACGGCTTGGAGGGAGATCTTTCCTATCTTTCGAGATCCACCCTACAATATGGGGTCAAAAAGCCAAAAAAATAAGTGATT-----TTAGCCCTTATAAAAAGAAAACGGATTCTTGAACCTCTTTCACGCTC >rps7:ndhB >outgroup CCATGAACAGAATCTAGGTATGTAGACACATGGATCCATACATCTCGATCGGAAAAGAATCAATAGAAGGAGAATCGGACGATATCTTTTTCGAAACAAATAAAAAGGAAAAGAAAGAGAAAACAGAAATCATGATCAACTAAGCCCTCTCGGGGGCTTGCTTAAGAATAAGAAAGAGGAATCTTATGGAAATAGCATGGAATAAGGTTTGATCCTATTCATGGGGATTCCGTAAATATCCCATTCCAAAAATCGAAACAATCGGGACTTTTCGGAGATTGGCTGCAGTTACTAATTC >Lolium_multiflorum CCATGAACAGAATCTAGGCATGTAGGCACATGGGTCCGTACATCTCGATCGGAAAAGAATCAATAGAAGGAGAATCGGACAATATCTTTCTCGAAACAAACAAAAAGCAAAAGAAAGAGAAAACAGAAATCATGATCAACTAAGCCCTCTCGAGGGCTTGCTTAAGAATAAGAAAGAAGAATCTTATGGAAATAGCATGGAATAAGGTTTGATCCTATTCATGGGGATTCCCTAAATATCCCATTCCAAAAATCGAAACAATCGGGACTTTTCGGAGATTGGATGCAGTTACTAATTC >Lolium_perenne CCATGAACAGAATCTAGGCATGTAGGCACATGGGTCCGTACATCTCGATCGGAAAAGAATCAATAGAAGGAGAATCGGACAATATCTTTCTCGAAACAAACAAAAAGCAAAAGAAAGAGAAAACAGAAATCATGATCAACTAAGCCCTCTCGAGGGCTTGCTTAAGAATAAGAAAGAAGAATCTTATGGAAATAGCATGGAATAAGGTTTGATCCTATTCATGGGGATCCCCTAAATATCCCATTCCAAAAATCGAAACAATCGGGACTTTTCGGAGATTGGATGCAGTTACTAATTC >ndhB:trnL-CAA >outgroup TGCTAGGTCTATTTCT----TAGTTCAAGATCCCTCTTACTAACTGGAATAAAAGAATTAGTAGATCTGTTCCGCCCAAAATGGGAATGGGTGCTAGGGTTATGAACTTATAATCATGGAATCGACTCGATCATCAGATTATAAGTTCATTCCATACCGGACCAGACCGTGCACATTCTTATTATGAGAAGGGGTCATTCGAGCCTATGGAAATAGGATACTCTGTTTACATAGAAATCCCTACGTCCTTACATTCTATTTAGGATTAGGAATAGGTGTAATCAGACCTGCTTTTGACATATCTATCCTATCCTTATTTGGGTACCATATGCACCTCTTTGGGCTTCTATTGAATCGAGAAATTGGATTGTACATC-------TTTTTGATTTTGATATCGATTTTGATACATATAAGGTGTCCTACGGATAATGCAAATCGAAGCTATTTGATGTCTGACTCAGGCCTAT-----CGATCGATCGAAATACTCCAAGACTCCACCTTTGTCATATATTCCATATATCACATTCGATAGATATCATATTCATGGAATACGATTCACTTTCAAGAT >Lolium_multiflorum TGCTAGGTCTATTTCTTTCTTAGTTCAAGATCCCTCTTACTAACTGGAATAAAAGAATTAGTAGATCTGTTCCGCCCAAAATGGGAATGGGCGCTAGGGTTATGAACTTATAATCATGGAATCAACTCGATCATCAGATTATAAGTTCATTCCAT-TTACATAGAAATCCCTACGTCCTTA--------------CATTCTA---TTTAGGATTAGGA------------ATAGG--------------TGTAATCAGATTAGGATTAGGAATAGGTGTAATCAGACCTGCTTTTGACATATCTATCCTATTCTTAGTTGGGTACCATATGCACCTCTTTGGGCTTCTATTGAATCGAGAAATTGGATTGTACATCTTTCATCTTTTTGATTTTGATATCGATTTTGATACATATAAGGTGTCCTACGGATAATGCAAATCGAAGCTATTTTATGTCTGACTCAGGCCTATATGACCGATCGATCGAAATACTCCAAGACTCCACCTTTGTCATATATTCCATATATCACATTAGATAGATATCATATTCATGGAATATGATTCACTTTCAAGAT >Lolium_perenne TGCTAGGTCTATTTCTTTCTTAGTTCAAGATCCCTCTTACTAACTGGAATAAAAGAATTAGTAGATCTGTTCCGCCCAAAATGGGAATGGGCGCTAGGGTTATGAACTTATAATCATGGAATCAACTCGATCATCAGATTATAAGTTCATTCCAT-TTACATAGAAATCCCTACGTCCTTA--------------CATTCTA---TTTAGGATTAGGA------------ATAGG--------------TGTAATCAGATTAGGATTAGGAATAGGTGTAATCAGACCTGCTTTTGACATATCTATCCTATTCTTAGTTGGGTACCATATGCACCTCTTTGGGCTTCTATTGAATCGAGAAATTGGATTGTACATCTTTCATCTTTTTGATTTTGATATCGATTTTGATACATATAAGGTGTCCTACGGATAATGCAAATCGAAGCTATTTTATGTCTGACTCAGGCCTATATGACCGATCGATCGAAATACTCCAAGACTCCACCTTTGTCATATATTCCATATATCACATTAGATAGATATCATATTCATGGAATATGATTCACTTTCAAGAT >trnL-CAA:trnI-CAU >outgroup AATATGGAGAATGCTCATTGAATGAGCATTCCCCGTAGAAGTATTCCGGAAATCAGCGCCTGGCGCTCTCCTCTATCTTCTGAGGTCCTTAACCATCTCCCTGAGAAAAGTAGACAGCAAAAGCCAAAATAGACTAAATATAGCCTGAACGATCCTAAAAACCCCTCGAAGGAGATAATAAAGAACCTAAAGCAGACGGTATCCTACTGCAAGGGTGGTCTTAAGAATCCAAAAGAGGTTGCTCAGAAGAGATAGATGTATCCCAACCTCTATTGCTCTCGCGTAAAGCCTTTTTTTTTACGCGACAGGAAAAAGTGACTACGAATTCCCCTTTTTGTTTGCGAATCCCTGTTTGTATCCTTTGAGCGCACGCCCAT-AAGTAGCGA-----TCAAGGAAATCGATCAAACGATCCCAATACCGTGAAAGAGAAACTTCCCAGATCCAGGGAAGCTTATCATAAAGGGCTTCAACAAGGGGTTTTATTCGTTCTTTGAGCAAAAAGAGAAAGATCGGATAGATTCGAACCGCAATTGCAAAGGTCATAACTACTATGCCAGCCCAAATCATGATCTTCACCAACTTGGATTTGGTTCTCTCGCGAAAATCGCG-----CAGAGATGAGAACCATGAAAAGCAAGATCCCGAATAAGAAAACAGAAACCGAGGAAACCACAAGAGTGAAGACTAGTAGAGTCTCATCTTTTGTCATTCTTTGCTCCTTTTTCACTCAATGATTCATTCGAATTTCCCAACCTAAAATTCTATATGTCTATTCTATGATATTTCTATATATATA--GAATATGATATCTAATATGACACCCGATTTGTCAAAGGGATTGGATTGGTGACTTACCCATTCAGTGACTTTGGCACTGGACGTTCCAAAAACGGGTACTATCGGATCGGGTGAATTAGAGAATAGACAGGGGTCCGTTGGCATTTCAGCTTCTCTTCTCCTTTCAGGGCCTATCCGAAAGAGAATCCAGGACCTCTTGGTCCTGAATATCAGAATAGGACGAACGAACCGGCCTCCGCGGATATCTTTGCTTCGGAACAAAACAATTAGCATTAGGCTCGGTCAACTGGAATGTGTATTATCCATATGGGAGATCTTCCAATCGAGAAGATCCATCGATCTGAGACGAAGAGAAAGGGCCAATTTTCTTTACTTATTCAGTTAAACCAAGGATTCGTTATGGAAGCAGATAGCAACAACCATTTCATCAGACATGCGTATTTTTGATTATCCGGTGGATTTACACAGTTTCATTAATGCAAATTGTTTGATGTAGTTAGTACTCAGGTTGTTCGACGCTCAAGAATTCTTATTTAGGCAGTTCATATCATCATACATAGTGTTTTGATCTAAGATTGCAATTCTTCCATGTTTCCGCAGTAGCATATTGTTCCATGGAGCTAGGGTCCAAAATAGGAATCAACAAGTGTTTCCACGACTCTACCGCCCGGCCAATCCTGTTCCACTGAATCCCCTCCCTTTTTCATGGCCACATATCTTTACGGCTAAGGAGTGGGAAATCTTTCTCCTGTTACACAAATCAAATGTTTCATTTCATCCGGGAAAAGCCACCTCTTTCTCCACAAACAATGTCTTTGTTGATCCAGGAGCCTTCCGTTAGATAGGAACAGCTTTGCTAAATACTGAGAACTCTCGGATAGAGTATTAGAATGAAAAGACCATTAATTATATAAGGAAGAACCCAGGGTTCTAGCCCATTCCCATTCCTAAATCAATAATTCGTAGTGCTTTTGCCTTTCTTGCGTACTCCTGGTGAACCGGTTGCTAGCCATATGTTTAGGAGGCTTTTTTCTCCAGGTACTGGTACTAAGCCGCTTTGCCATCTCTTCATCTTCATCTGCAAAGAATTCTCGACGTGAAAACACAGAGACAAAGGCCTGATCTTTGAATAGGAAAAAGAATGGATCCGAAGGGTCCCAAATCAATTGGCTTATTCGAAAAAAGCCTTCTTCTTTGAAAGATATATCTCGTGTCTGGTACTGCATTGTTCCACTCTGCAAGAAGTCCGAATCAGTCTCTTGCACCTCCTCCTTTTTATGATAAATATACCAGAAATAATTCGAATAAATAGCAGTCTCTGACAACTCATCCTCTTTAATCTGCTTGGACCCGCTCCAATACCCATAGGAAAATCCCCAGTCATATTCAGCGTACCTGTCCCTGCAATCAAATAGATTGTCCCAAGGGCCCCATATTCTAGGAGCCCAAGTTATGCTATTGAAAATTCGTTCCTCTAGCAGTTCCGGTTTGACCATTCCGTTCCCTTTTTCAAACTCCACTTCTTTTCATATAGCAATCCCTAATCAAAGAGAGAACAATATCCATTTCAAAACATTGCTAATGGATTCCTTGGTTCGGACCGACGAAGTAATGGCATTCGAT------CAACCCAACTGCAATCTTTTTCTGTCGGTAAGGATTGCACCAGAGCACCTTCTACTTCTAATAGGCCATGAACTATAGATAGAGAAGAATCATTCTGAGCGAGTCCATAAGAAGCGACCCACTTTTT--CATCGGTTC-----CGGGGGAAGACCAAAGATCTTGCGCGACCGGTCCGCCAGAAAAACTCAAAAGAGAAAGAAGTCTCGTTAATCTCTTCATGCTCGTTACAAGTTCGAAGTACCGTTT-----GGCCAAAGAAAAAGCCGCTTCCTGACACGATTGCCTCTTTATATAGATAGATATAGGATCTATGGGGTTATTACTTAGAAGTCTATTTTGTACAAGATCCCCTCCTATCTGATAGAAAAGGGTCCCATGATCCCGAGCCGGTCTTATCTTGGCTCGCAAACCCCAAGTTTGTCTATGAGGAGCTAATCTAATTGTATTAGTTTCTATAATGGATTTCTTATGTGGAATACTAATGGATAGGGCCTCGTTGCTAAGTGCTACAAGATCTAGTGCACTGGAACTCGTGGTTATGGACCCGAATCCTTTAGTATGGAACATTGTCTTTTCCAAGTAAAAACCC-TAGTATATGAAAGAATGAAAAGGTGCTTTCGTTCTTGTGGAATAAGAAGCCCTCGTACCTTAACGAAAGGAAAATAGGAATTTTTCGTTAGGTATTTGACCAAATAGGATCGTCCAGTTCCTATAGAACCTATCACTAAAATACCCGATAGGGCTAAGCGGAACGAAAAGGGTTTTCCATGAGATGGTAAATGAAAACGATTAGCCCCACACGAGGTTTGGGAATAAGTGATTGTCTGATAATGAGCAAGGAATATACGTCTTTCTGCTAAAGAGGATCTATTAAACTCATAATTCATTAGATCCTTGTTAGCAATGTCAACTAGGTATCATAAGTAAATGGATCCCGGTTGTTCAATCCTTTGATAACCAAGGTCATTCTTTGCTAAAGAGAAATGATCACTATGGGTCAGACTCAATAGAATTGGATCCATTCAAAATAGCGAGAATTAGGATTCTTGATCCCTCTCAATCTCTCTTTCAATTCGAGGATCCGGAGAGGTGTTTTCATAGTCATCTCCGAATATTTGCCATCTCCGAATATTTTCAATTTCATTTTTCTATGATATGTCTTTCTATATCAAAATTGGTTATTTACGATGTACGATGATCCCTGTTAA >Lolium_multiflorum AATATGGAGAATGCTCATTCAATCAGCATTCCCCGTAGAAGTATTCCGAAAATCTGCGCCTGGCGCTCTCCTCTATCTTCTGAGGTCCTTAACCATCTCCCTGAGAAAAGTAGACAGTAAAAGCCAAAATAGACTAAATATAGCCTGAACGATCCTAAAAATCCCTCGAAGGAGATAATAAAGAACCCAAAGCAGATGGTATCCTACTGCAAGGGTGGTCTTAAGAATCCAAAAGAGGTTGCTCAGAAGAGATAGATGTATCCCAACCGCTATTGCTCTCGCGTAAAGACTTTTTTTT-ACGCGACAGGAAAAAATGACTACGAATTCCCCTTTTTGTTTGCGAATCCCTGTTTGTATCCTTTGAGCACACGCCTATTAAGTAGCGATCAAATCAAGGAAATCGATCAAACGATCCCAATACCGTGAAAGAGAAACTTCCCAGATCCAGGGAAGCTTATCATAAAGGGCTTCGACAAGGGGTTTTCTTCGTTCTTTGAGCAAAAAGATAAAGATCGGATAGATTCGAACCGCAATTGCAAAGGTAATAACTACTATGCCAGCCCAAATCATGATCTTCACCAACTTGGATTTGGTTCTCTCGCGAAAATCGCGAGTTGCAGAGATGAGAACCATGAAAAGCAAGATCCCGAATAAGAAAACAGAAACCGAGGAAACCACAAGAGTGAAGACTAGTAGAGTCTCGTCTTTTGCCATTCTTTGCTCCTTTTTCACTCAATGATTCATTCTAATTTCCCGACCAAAAATTCTATATCTCTATTCTATGATATTTCTATATATATATAGAATATGATATCTAATATGACACCCGATTTGTCAAAGGGATTGGATTGGTGACTTACCCATTCAGTGACTTTGGCACTGGACGTTCCAAAAACGGGTACTATCGGATCGGGTGAATTAGAGAATAGACAGAGGTCCGTTGGCATTTCAGCCTTTCTTCTCCTTTCAGGGCCTATCCGAAAGAGAATCCAGTACCTCTTGGTCCTGAATATCAGAATAGGACGAACGAACCGGACCCCGCGGATATCTTTGCTTCGGAACAAAACAA---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------AACCCTGCAATCAAATAGATTGTCCCAAGGGCGCCATATTCTAGGAGCCCAAGTTATGCTATTGAAAATTAGTTCCTCTAGCAGTTCCGGTTTGAGCATTCCGTTCCCTTTTTCAAACTCCACTTCTTTTCATATAGCAATCCCTGATCAAAGAGAGAACAATATCCATTTCAAAACATTTCTAACGGATTCCTTGGTTCGGACCGACGAAGTAATGGCACTCGATTATTATCAACCTGGCTGCAATCTTTTTCTGTCGGTAAGGATTGCACCAGAGCACCTTCTACTTCTAATAGGCCATGAACTATAGATAGAGAAGAATCATTCTGAGCGAGTACATAAGAAGCGATCCACTTTTTTTCATCGGTTCCAGGCCAGGGGAAGACCAAAGATCTTGCGCGGCAGGTCCGCCAGAAAAACGAAAAAGAGAAAGAAGTCTCGTTAATCTATTCATGCTCGTTCCAAGTTCGAAGTACCTTTTCTTTTGGCCAAAGAAAAACCCGCTTCCTGACACGATTGCCTCTTTATATAGATAGAT------TCGATGGGGTTATTACTTATAAGTCTATTTTGTACAAGAGCCCCTCCTATCTGATAGAAAAGGGTCCCATGATCCCGAGCCGATCTTACCTTGGCTCGCAAACCCCAAGTTTGTCTATGAAGAGCTAATCTAATTGTATTTTTTTTT-TAATGGATTTCTTATGTGGAATACTAATGGATAGGGCCTCGTTGCTAAGTGTTACAAGATCTAGTGCACTGGAACTCGTGGTTATGGACCCGAATCCTTTAGTATGCAACATTGTCTTTTCCAAGTAAAAACCCCTAGTATATGAAAGAATGAAAAGGTGCTTTCGTTCTTGTGGAATAAGAAGCCCTCGTACCTTACTGAAAGGAAAATCGTAATTTTTCGTTAGGTATTTGACCAAATAGGATCGTCCAGTTCCTATAGAACCTATCACTAAAATACCCGATAGGGCTAAGCGGAACGAAAAGGGTTTTCCATGAG-----------------------------------------TAAGTGATTGTCTGATAATGAGCAAGGAATATAGGTCTTTCTGCTAAAGGGGATCTATTAAACTCATAATTCATTGGATCCTTGTTATCAATGCCAACTAGGTATCATAAGTAAATGGATCCCGGTTGTTCAATCCTTTGATAACCAAGGTCATTCTTTGCTAAAGAGAAATGATCACTATGAGTCAGATTCAATAGAATTGGATCCATTCCAAATAGCAAGAATTAGGATTCTTGATCCCTCTCAATCTCTCTTTCAATTCGAGGATCCAGAGAGGTGTTTTCATAGTCATCTCCTAATATTT-----------------TCGATTTCATTTTTCTATGATATGCCTTTCTATATGAAAATTTGTTATTTACGATGTACGATGATCCCTGTTAA >Lolium_perenne AATATGGAGAATGCTCATTCAATCAGCATTCCCCGTAGAAGTATTCCGAAAATCTGCGCCTGGCGCTCTCCTCTATCTTCTGAGGTCCTTAACCATCTCCCTGAGAAAAGTAGACAGTAAAAGCCAAAATAGACTAAATATAGCCTGAACGATCCTAAAAATCCCTCGAAGGAGATAATAAAGAACCCAAAGCAGATGGTATCCTACTGCAAGGGTGGTCTTAAGAATCCAAAAGAGGTTGCTCAGAAGAGATAGATGTATCCCAACCGCTATTGCTCTCGCGTAAAGACTTTTTTTT-ACGCGACAGGAAAAAATGACTACGAATTCCCCTTTTTGTTTGCGAATCCCTGTTTGTATCCTTTGAGCACACGCCTATTAAGTAGCGATCAAATCAAGGAAATCGATCAAACGATCCCAATACCGTGAAAGAGAAACTTCCCAGATCCAGGGAAGCTTATCATAAAGGGCTTCGACAAGGGGTTTTCTTCGTTCTTTGAGCAAAAAGATAAAGATCGGATAGATTCGAACCGCAATTGCAAAGGTAATAACTACTATGCCAGCCCAAATCATGATCTTCACCAACTTGGATTTGGTTCTCTCGCGAAAATCGCGAGTTGCAGAGATGAGAACCATGAAAAGCAAGATCCCGAATAAGAAAACAGAAACCGAGGAAACCACAAGAGTGAAGACTAGTAGAGTCTCGTCTTTTGCCATTCTTTGCTCCTTTTTCACTCAATGATTCATTCTAATTTCCCGACCAAAAATTCTATATCTCTATTCTATGATATTTCTATATATATATAGAATATGATATCTAATATGACACCCGATTTGTCAAAGGGATTGGATTGGTGACTTACCCATTCAGTGACTTTGGCACTGGACGTTCCAAAAACGGGTACTATCGGATCGGGTGAATTAGAGAATAGACAGAGGTCCGTTGGCATTTCAGCCTTTCTTCTCCTTTCAGGGCCTATCCGAAAGAGAATCCAGTACCTCTTGGTCCTGAATATCAGAATAGGACGAACGAACCGGACCCCGCGGATATCTTTGCTTCGGAACAAAACAA---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------AACCCTGCAATCAAATAGATTGTCCCAAGGGCGCCATATTCTAGGAGCCCAAGTTATGCTATTGAAAATTAGTTCCTCTAGCAGTTCCGGTTTGAGCATTCCGTTCCCTTTTTCAAACTCCACTTCTTTTCATATAGCAATCCCTGATCAAAGAGAGAACAATATCCATTTCAAAACATTTCTAACGGATTCCTTGGTTCGGACCGACGAAGTAATGGCACTCGATTATTATCAACCTGGCTGCAATCTTTTTCTGTCGGTAAGGATTGCACCAGAGCACCTTCTACTTCTAATAGGCCATGAACTATAGATAGAGAAGAATCATTCTGAGCGAGTACATAAGAAGCGATCCACTTTTTTTCATCGGTTCCAGGCCAGGGGAAGACCAAAGATCTTGCGCGGCAGGTCCGCCAGAAAAACGAAAAAGAGAAAGAAGTCTCGTTAATCTATTCATGCTCGTTCCAAGTTCGAAGTACCTTTTCTTTTGGCCAAAGAAAAACCCGCTTCCTGACACGATTGCCTCTTTATATAGATAGAT------TCGATGGGGTTATTACTTATAAGTCTATTTTGTACAAGAGCCCCTCCTATCTGATAGAAAAGGGTCCCATGATCCCGAGCCGATCTTACCTTGGCTCGCAAACCCCAAGTTTGTCTATGAAGAGCTAATCTAATTGTATTTTTTTTT-TAATGGATTTCTTATGTGGAATACTAATGGATAGGGCCTCGTTGCTAAGTGTTACAAGATCTAGTGCACTGGAACTCGTGGTTATGGACCCGAATCCTTTAGTATGCAACATTGTCTTTTCCAAGTAAAAACCCCTAGTATATGAAAGAATGAAAAGGTGCTTTCGTTCTTGTGGAATAAGAAGCCCTCGTACCTTACTGAAAGGAAAATCGTAATTTTTCGTTAGGTATTTGACCAAATAGGATCGTCCAGTTCCTATAGAACCTATCACTAAAATACCCGATAGGGCTAAGCGGAACGAAAAGGGTTTTCCATGAG-----------------------------------------TAAGTGATTGTCTGATAATGAGCAAGGAATATAGGTCTTTCTGCTAAAGGGGATCTATTAAACTCATAATTCATTGGATCCTTGTTATCAATGCCAACTAGGTATCATAAGTAAATGGATCCCGGTTGTTCAATCCTTTGATAACCAAGGTCATTCTTTGCTAAAGAGAAATGATCACTATGAGTCAGATTCAATAGAATTGGATCCATTCCAAATAGCAAGAATTAGGATTCTTGATCCCTCTCAATCTCTCTTTCAATTCGAGGATCCAGAGAGGTGTTTTCATAGTCATCTCCTAATATTT-----------------TCGATTTCATTTTTCTATGATATGCCTTTCTATATGAAAATTTGTTATTTACGATGTACGATGATCCCTGTTAA >trnI-CAU:rpl23 >outgroup GCGAACGGGAACGTTCCATAAGTCTATTGGAACTGGCTCTCTATCCATGGAATCTCATCCATCATCCATACATAACGAATTGGTATGGTATATTCATACCATAACATAAGAACAATAAGAACTCGAATTCTTATCGATACTGGAACTCAGAGCATAGGAGGGAAAGTCGATTT >Lolium_multiflorum GCGAACGGGAACGTTCCATAAGTCTATTGGAACTGGTTCTCTATCCATGGAATCTCATCCATCATCCATACATAACGAATTGGTATGGTATATTCATACCATAACATAAGAACAATAAGAACTCGAATTCTTATCGATACTGGAACTCAGAGCATAGGAGGGAAAGTCGATTT >Lolium_perenne GCGAACGGGAACGTTCCATAAGTCTATTGGAACTGGTTCTCTATCCATGGAATCTCATCCATCATCCATACATAACGAATTGGTATGGTATATTCATACCATAACATAAGAACAATAAGAACTCGAATTCTTATCGATACTGGAACTCAGAGCATAGGAGGGAAAGTCGATTT >trnH-GUG:rps19 >outgroup -CTTATCCAGCTAAAGGATTTT-CTCTTTTTTCCATTCATCATTATCCTATTTATTCTGACCTACATACCTCGATCGAGATAGTGGACATAGGATGCCACTCTTTAAAATGAAAAAA-----GGAGTAATCAGCT >Lolium_multiflorum CCTTATCCAGCTAAAGGATTTTTCTCTTTTTTTCATTCATCATTATTCTATTTATTTTGACCTCCATACTTCGATCGAGATATTGGACATAGAATGCCACTCTTTAAAAAGAAAAAAAAAA-GGAGTAATCAGCT >Lolium_perenne CCTTATCCAGCTAAAGGATTTTTCTCTTTTTTTCATTCATCATTATTCTATTTATTTTGACCTCCATACTTCGATCGAGATATTGGACATAGAATGCCACTCTTTAAAAAGAAAAAAAAAAAGGAGTAATCAGCT