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##contig= ##contig= ##contig= ##contig= ##contig= ##contig= ##contig= ##contig= ##contig= ##contig= ##contig= ##contig= ##contig= ##contig= ##contig= ##contig= ##contig= ##contig= ##contig= ##contig= ##contig= ##contig= ##contig= ##contig= ##contig= ##contig= ##contig= ##contig= ##contig= ##contig= ##contig= ##contig= ##contig= ##contig= ##contig= ##contig= ##contig= ##contig= ##contig= ##contig= ##contig= ##contig= ##contig= ##contig= ##contig= ##contig= ##contig= ##contig= ##contig= ##contig= ##contig= ##contig= ##contig= ##contig= ##contig= ##contig= ##contig= ##contig= ##contig= ##contig= ##contig= ##contig= ##contig= ##contig= ##contig= ##contig= ##contig= ##contig= ##contig= ##contig= ##contig= ##contig= ##contig= ##contig= ##contig= ##contig= ##contig= ##contig= ##contig= ##contig= ##contig= ##contig= ##contig= ##contig= ##contig= ##contig= ##contig= ##contig= ##contig= ##contig= ##contig= ##contig= ##contig= ##contig= ##contig= ##contig= ##contig= ##contig= ##contig= ##contig= ##contig= ##contig= ##contig= ##contig= ##contig= ##contig= ##contig= ##contig= ##contig= ##contig= ##contig= ##contig= ##contig= ##contig= ##contig= ##contig= ##contig= ##contig= ##contig= ##contig= ##contig= ##contig= ##contig= ##contig= ##contig= ##contig= ##contig= ##contig= ##contig= ##contig= ##contig= ##contig= ##contig= ##contig= ##contig= ##contig= ##contig= ##contig= ##contig= ##contig= ##contig= ##contig= ##contig= ##contig= ##contig= ##contig= ##contig= ##source=GenomicsDBImport ##source=GenotypeGVCFs ##source=HaplotypeCaller #CHROM POS ID REF ALT QUAL FILTER INFO FORMAT Lepcoro.AMNH.524.VE.vicinityofCerrodelaNeblinabasecamponRioMawarinuma Lepcoro.AMNH.525.VE.NsideCerroGuaiquinimaCamp1 Lepcoro.FMNH.486.PE.ProvTocacheCordileraAzulN.P.RioPescaderonortheastofShapaja Lepcoro.FMNH.497.PE.Moskitania13.4kmNNWAtalayalbankAltoMadredeDios Lepcoro.LSUMNS.100.CR.RioCopeyca4kmEJaco Lepcoro.LSUMNS.402.BO.RioBeni20kmbyriverNPuertoLinares Lepcoro.LSUMNS.404.PA.About6kmNWCanaonEslopeCerroPirre Lepcoro.LSUMNS.410.CR.GolfitoParqueNacionalPiedrasBlancas Lepcoro.LSUMNS.46.PE.20kmbyroadNETarapotoonroadtoYurimaguas Lepcoro.LSUMNS.647.BO.5.9kmSSEVillaTunari Lepcoro.LSUMNS.65.PE.LowerRioNaporegionEBankRioYanayacu90kmNIquitos Lepcoro.LSUMNS.8.PE.Ca54kmNNWmouthofMoronaonWbank Lepcoro.LSUMNS.80.CR.MarencoBiologicalStationPeninsuladeOsa Lepcoro_ANSP_471_EC_20kmNNWofAltoTambo Lepcoro_ANSP_485_EC_Ca14kmNTigrePlaya Lepcoro_FMNH_687_CO_Montanita Lepcoro_FMNH_690_CO_Sabaletas Lepcoro_LSUMNS_674_EC_Limoncocha Lepcoroxsuav_FMNH_686_BR_BV8Venezuelaborder Sample169 Sample234 Sample390 Sample417 Sample445 Sample602 Sample604 Sample606 Sample608 Sample612 Sample613 Sample615 Sample617 Sample618 Sample623 Sample626 Sample627 Sample629 Sample631 Sample639 Sample640 Sample641 Sample643 Sample644 Sample645 Sample655 Sample656 Sample706 Sample714 Sample721 Sample746 Sample776 Sample778 Sample780 Sample782 Sample835 Sample895 Sample907 Sample921 Sample922 Sample923 Sample924 Sample925 Sample926 Sample933 Sample939 Sample944 Sample945 NW_016690180.1 73253 . A G 189489 . AC=196;AF=0.120;AN=1638;BaseQRankSum=-6.072e+00;DP=40691;ExcessHet=0.0000;FS=1.359;InbreedingCoeff=0.2023;MLEAC=202;MLEAF=0.123;MQ=60.00;MQRankSum=0.00;QD=21.20;ReadPosRankSum=0.00;SOR=0.410 GT:AD:DP:GQ:PGT:PID:PL:PS 0/0:51,0:51:99:.:.:0,120,1706:. 0/0:52,0:52:99:.:.:0,120,1800:. 0/0:49,0:49:99:.:.:0,120,1800:. 0/0:51,0:51:99:.:.:0,120,1800:. 0/0:48,0:48:99:.:.:0,120,1128:. 0/0:50,0:50:99:.:.:0,116,1533:. 0/0:102,0:102:99:.:.:0,120,1800:. 0/0:49,0:49:99:.:.:0,120,1800:. 0/0:51,0:51:99:.:.:0,120,1800:. 0/0:49,0:49:99:.:.:0,119,1570:. 0/0:49,0:49:99:.:.:0,120,1800:. 0/1:28,23:51:99:.:.:511,0,1104:. 0/0:52,0:52:99:.:.:0,101,1548:. 0/0:87,0:87:99:.:.:0,120,1800:. 0/0:37,0:37:99:.:.:0,99,929:. 0|1:79,80:159:99:0|1:73253_A_G:3057,0,3036:73253 0/0:63,0:63:99:.:.:0,100,1373:. 0|1:33,28:62:99:0|1:73253_A_G:1065,0,1268:73253 0/0:87,0:87:99:.:.:0,120,1800:. 0/0:47,0:47:99:.:.:0,120,1800:. 0/0:48,0:48:99:.:.:0,120,1800:. 0/1:33,20:53:99:.:.:456,0,1288:. 0/0:50,0:50:99:.:.:0,104,1448:. 0/0:49,0:49:99:.:.:0,119,1468:. 0/0:49,0:49:99:.:.:0,120,1800:. 0/0:54,0:54:99:.:.:0,115,1287:. 0/0:50,0:50:99:.:.:0,120,1800:. 0/0:49,0:49:99:.:.:0,120,1800:. 0/0:51,0:51:99:.:.:0,120,1800:. 0/0:51,0:51:99:.:.:0,108,1220:. 0/0:50,0:50:99:.:.:0,118,1402:. 0/0:51,0:51:99:.:.:0,108,1627:. 0/0:50,0:50:99:.:.:0,117,1236:. 0/0:49,0:49:99:.:.:0,120,1800:. 0/0:50,0:50:99:.:.:0,120,1800:. 0/0:50,0:50:99:.:.:0,120,1800:. 0/0:47,0:47:99:.:.:0,120,1800:. 0/0:49,0:49:99:.:.:0,120,1800:. 0/0:48,0:48:99:.:.:0,105,1157:. 0/0:46,0:46:99:.:.:0,120,1800:. 0/0:49,0:49:99:.:.:0,120,1800:. 0/0:49,0:49:99:.:.:0,120,1800:. 0/0:48,0:48:99:.:.:0,120,1800:. 0/0:48,0:48:99:.:.:0,111,1048:. 0/0:49,0:49:99:.:.:0,120,1800:. 0/0:48,0:48:99:.:.:0,120,1800:. 0/0:48,0:48:99:.:.:0,119,1166:. 0/0:52,0:52:99:.:.:0,116,1283:. 0/0:46,0:46:99:.:.:0,118,1387:. 0/0:52,0:52:99:.:.:0,99,1187:. 0/0:50,0:50:99:.:.:0,108,1187:. 0/0:49,0:49:99:.:.:0,120,1800:. 0/0:53,0:53:99:.:.:0,119,1622:. 0/0:51,0:51:99:.:.:0,114,1395:. 0/0:50,0:50:99:.:.:0,120,1800:. 0/0:50,0:50:99:.:.:0,104,1130:. 0/0:49,0:49:99:.:.:0,119,1598:. 0/0:48,0:48:99:.:.:0,117,1327:. 0/0:48,0:48:99:.:.:0,115,1227:. 0/0:49,0:49:99:.:.:0,118,1131:. 0/0:48,0:48:99:.:.:0,119,1547:. 0/0:49,0:49:99:.:.:0,102,1058:. 0/0:45,0:45:99:.:.:0,115,1141:. 0/0:48,0:48:99:.:.:0,106,1538:. 0/0:51,0:51:99:.:.:0,120,1800:. 0/0:50,0:50:99:.:.:0,99,1222:. 0/0:54,0:54:99:.:.:0,120,1800:. NW_016690180.1 1297149 . C T 1881.16 . 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C T 114869 . 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T C 151918 . 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T C 18705.8 . 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A T 5222.12 . 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NW_016690184.1 2351417 . C T 61830.1 . 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C T 22323 . 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C T 26613.9 . 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AC=207;AF=0.127;AN=1624;BaseQRankSum=1.09;DP=50768;ExcessHet=0.0033;FS=0.000;InbreedingCoeff=0.1675;MLEAC=216;MLEAF=0.133;MQ=60.00;MQRankSum=0.00;QD=14.38;ReadPosRankSum=0.013;SOR=1.078 GT:AD:DP:GQ:PL 0/0:79,0:79:99:0,120,1800 0/1:41,43:84:99:1092,0,1032 0/1:46,28:74:99:677,0,1256 0/0:82,0:82:99:0,120,1800 0/0:95,0:95:99:0,120,1800 0/0:49,0:49:99:0,104,1305 0/1:60,40:100:99:995,0,1947 0/0:49,0:49:99:0,120,1800 0/0:84,0:84:99:0,120,1800 0/0:94,0:94:99:0,120,1800 0/0:87,0:87:99:0,120,1800 0/0:110,0:110:99:0,120,1800 0/0:79,0:79:99:0,120,1800 0/1:35,47:82:99:843,0,592 0/0:33,0:33:99:0,99,798 0/0:102,0:102:99:0,120,1800 0/1:62,47:113:99:788,0,1220 0/0:40,0:40:99:0,99,959 0/1:76,73:152:99:1216,0,1445 1/1:0,62:62:99:1956,186,0 0/1:27,28:55:99:749,0,698 0/0:50,0:50:99:0,119,1479 0/0:76,0:76:99:0,120,1800 0/0:49,0:49:99:0,116,1097 1/1:0,50:50:99:1461,150,0 1/1:0,57:57:99:1669,171,0 1/1:0,53:53:99:1449,159,0 1/1:0,69:69:99:1944,207,0 1/1:0,55:55:99:1636,165,0 0/0:48,0:48:99:0,120,1800 1/1:0,82:82:99:2347,245,0 0/0:47,0:47:99:0,103,1287 0/0:49,0:49:99:0,105,1265 0/0:70,0:70:99:0,120,1800 0/0:48,0:48:99:0,120,1800 0/0:48,0:48:99:0,120,1414 0/0:49,0:49:99:0,120,1547 0/0:68,0:68:99:0,120,1800 0/0:48,0:48:99:0,112,1371 0/0:58,0:58:99:0,120,1800 0/0:69,0:69:99:0,120,1800 0/1:22,41:63:99:1039,0,417 1/1:1,62:63:99:1895,160,0 0/1:29,36:65:99:851,0,625 0/0:94,0:94:99:0,120,1800 0/0:93,0:93:99:0,120,1800 0/0:49,0:49:99:0,100,1800 0/0:87,0:87:99:0,120,1800 0/0:50,0:50:99:0,120,1800 0/0:87,0:87:99:0,120,1800 0/0:86,0:86:99:0,120,1800 0/1:35,29:64:99:694,0,1296 0/0:82,0:82:99:0,120,1800 0/0:91,0:91:99:0,120,1800 0/0:68,0:68:99:0,120,1800 0/0:78,0:78:99:0,120,1800 0/0:48,0:48:99:0,105,1382 0/0:46,0:46:99:0,116,1560 0/0:50,0:50:99:0,120,1238 0/0:68,0:68:99:0,120,1800 0/0:71,0:71:99:0,120,1800 0/0:72,0:72:99:0,120,1800 0/0:49,0:49:99:0,120,1800 0/0:70,0:70:99:0,120,1800 0/0:57,0:57:99:0,120,1800 0/0:100,0:100:99:0,120,1800 0/1:47,31:78:99:699,0,1864 NW_016690189.1 4265906 . C T 2701.33 . AC=5;AF=3.071e-03;AN=1628;BaseQRankSum=5.41;DP=38370;ExcessHet=0.0134;FS=0.000;InbreedingCoeff=0.5782;MLEAC=5;MLEAF=3.071e-03;MQ=60.00;MQRankSum=0.00;QD=13.18;ReadPosRankSum=0.00;SOR=0.784 GT:AD:DP:GQ:PL 0/0:101,0:101:99:0,120,1800 0/0:64,0:64:99:0,120,1800 0/0:62,0:62:99:0,120,1800 0/0:108,0:108:99:0,120,1800 0/0:55,0:55:99:0,120,1800 0/0:60,0:60:99:0,120,1800 0/0:61,0:61:99:0,120,1800 0/0:54,0:54:99:0,120,1800 0/0:56,0:56:99:0,120,1800 0/0:59,0:59:99:0,120,1800 0/0:50,0:50:99:0,120,1800 0/0:50,0:50:99:0,119,1446 0/0:54,0:54:99:0,114,1732 0/0:35,0:35:99:0,105,870 0/0:40,0:40:99:0,101,1008 0/0:36,0:36:99:0,102,894 0/0:44,0:44:99:0,120,1800 0/0:33,0:33:99:0,99,792 0/0:121,0:121:99:0,120,1800 0/0:17,0:17:51:0,51,391 0/0:53,0:53:99:0,120,1800 0/0:48,0:48:99:0,112,1618 0/0:58,0:58:99:0,120,1800 0/0:48,0:48:99:0,118,1216 0/0:58,0:58:99:0,120,1800 0/0:48,0:48:99:0,99,1570 0/0:57,0:57:99:0,120,1800 0/0:63,0:63:99:0,120,1800 0/0:51,0:51:99:0,120,1800 0/0:66,0:66:99:0,120,1800 0/0:50,0:50:99:0,120,1800 0/0:60,0:60:99:0,120,1800 0/0:48,0:48:99:0,120,1800 0/0:56,0:56:99:0,120,1800 0/0:46,0:46:99:0,120,1800 0/0:54,0:54:99:0,120,1800 0/0:55,0:55:99:0,120,1800 0/0:45,0:45:99:0,120,1800 0/0:58,0:58:99:0,120,1800 0/0:58,0:58:99:0,120,1800 0/0:57,0:57:99:0,120,1800 0/0:96,0:96:99:0,120,1800 0/0:36,0:36:99:0,107,784 0/0:51,0:51:99:0,114,1168 0/0:53,0:53:99:0,120,1800 0/0:48,0:48:99:0,120,1800 0/0:46,0:46:99:0,120,1800 0/0:47,0:47:99:0,108,1209 0/0:44,0:44:99:0,120,1800 0/0:66,0:66:99:0,120,1800 0/0:60,0:60:99:0,120,1800 0/0:20,0:20:60:0,60,457 0/0:60,0:60:99:0,120,1800 0/0:61,0:61:99:0,120,1800 0/0:49,0:49:99:0,113,1607 0/0:57,0:57:99:0,120,1800 0/0:49,0:49:99:0,120,1800 0/0:40,0:40:99:0,119,867 1/1:0,35:35:99:1049,105,0 0/0:81,0:81:99:0,120,1800 0/0:56,0:56:99:0,120,1800 0/0:71,0:71:99:0,120,1800 0/1:37,28:65:99:632,0,861 0/0:61,0:61:99:0,120,1800 0/0:56,0:56:99:0,120,1800 0/0:56,0:56:99:0,120,1800 0/0:50,0:50:99:0,120,1800 NW_016690189.1 4691797 . C T 8671.85 . AC=8;AF=4.969e-03;AN=1610;BaseQRankSum=4.91;DP=41698;ExcessHet=0.0000;FS=0.000;InbreedingCoeff=0.6187;MLEAC=8;MLEAF=4.969e-03;MQ=60.00;MQRankSum=0.00;QD=31.08;ReadPosRankSum=-2.530e-01;SOR=2.640 GT:AD:DP:GQ:PGT:PID:PL:PS 0/0:56,0:56:99:.:.:0,120,1800:. 0/0:58,0:58:99:.:.:0,120,1800:. 0/0:51,0:51:99:.:.:0,120,1800:. 0/0:51,0:51:99:.:.:0,120,1800:. 0/0:52,0:52:99:.:.:0,120,1800:. 0/0:54,0:54:99:.:.:0,120,1800:. 0/0:51,0:51:99:.:.:0,120,1800:. 0/0:50,0:50:99:.:.:0,120,1800:. 0/0:49,0:49:99:.:.:0,120,1800:. 0/0:53,0:53:99:.:.:0,120,1800:. 0/0:52,0:52:99:.:.:0,120,1800:. 0/0:65,0:65:99:.:.:0,120,1800:. 0/0:56,0:56:99:.:.:0,103,1527:. 0/0:34,0:34:99:.:.:0,102,816:. 0/0:33,0:33:99:.:.:0,99,797:. 0/0:39,0:39:99:.:.:0,117,942:. 0/0:33,0:33:99:.:.:0,99,811:. 0/0:45,0:45:99:.:.:0,120,1800:. 0/0:94,0:94:99:.:.:0,120,1800:. 0/0:52,0:52:99:.:.:0,120,1800:. 0/0:55,0:55:99:.:.:0,120,1800:. 0/0:106,0:106:99:.:.:0,120,1800:. 0/0:59,0:59:99:.:.:0,120,1800:. 0/0:55,0:55:99:.:.:0,120,1800:. 0/0:54,0:54:99:.:.:0,101,1102:. 0/0:54,0:54:99:.:.:0,120,1800:. 0/0:55,0:55:99:.:.:0,120,1800:. 0/1:28,26:54:99:.:.:556,0,575:. 0/1:30,24:54:99:.:.:883,0,1187:. 0/0:59,0:59:99:.:.:0,99,1557:. 1|1:1,57:58:99:1|1:4691797_C_T:2528,170,0:4691797 0/0:52,0:52:99:.:.:0,120,1800:. 0/0:52,0:52:99:.:.:0,119,1637:. 0/0:56,0:56:99:.:.:0,118,1349:. 0/0:50,0:50:99:.:.:0,120,1800:. 0/0:49,0:49:99:.:.:0,120,1800:. 0/0:48,0:48:99:.:.:0,120,1800:. 0/0:49,0:49:99:.:.:0,120,1800:. 0/0:52,0:52:99:.:.:0,120,1800:. 0/0:59,0:59:99:.:.:0,120,1800:. 0/0:51,0:51:99:.:.:0,120,1800:. 0/0:50,0:50:99:.:.:0,120,1800:. 0/0:57,0:57:99:.:.:0,120,1800:. 0/0:47,0:47:99:.:.:0,120,1800:. ./.:1,0:1:.:.:.:0,0,0:. ./.:0,0:0:.:.:.:0,0,0:. 0/0:54,0:54:99:.:.:0,120,1800:. 0/0:53,0:53:99:.:.:0,116,1538:. 0/0:51,0:51:99:.:.:0,120,1800:. 0/0:58,0:58:99:.:.:0,115,1800:. 0/0:56,0:56:99:.:.:0,120,1800:. 0/0:51,0:51:99:.:.:0,120,1800:. 0/0:58,0:58:99:.:.:0,120,1800:. 0/0:57,0:57:99:.:.:0,120,1800:. 0/0:53,0:53:99:.:.:0,120,1800:. 0/0:58,0:58:99:.:.:0,120,1800:. 0/0:53,0:53:99:.:.:0,111,1292:. 0/0:47,0:47:99:.:.:0,120,1800:. 0/0:54,0:54:99:.:.:0,117,1484:. 0/0:59,0:59:99:.:.:0,120,1800:. 0/0:58,0:58:99:.:.:0,120,1800:. 0/0:47,0:47:99:.:.:0,120,1800:. 0/0:51,0:51:99:.:.:0,120,1800:. 0/0:53,0:53:99:.:.:0,115,1209:. 0/0:51,0:51:99:.:.:0,120,1482:. 0/0:66,0:66:99:.:.:0,120,1800:. 0/0:58,0:58:99:.:.:0,120,1800:. NW_016690189.1 4780194 . C T 12628.1 . 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G A 2236.36 . 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A T 32872.4 . 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C T 46246.7 . 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A T 128748 . 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NW_016690191.1 3602965 . C T 5661.72 . 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C A 89115.3 . 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AC=40;AF=0.024;AN=1634;BaseQRankSum=-6.160e+00;DP=39165;ExcessHet=-0.0000;FS=0.000;InbreedingCoeff=0.5817;MLEAC=41;MLEAF=0.025;MQ=59.98;MQRankSum=0.00;QD=17.29;ReadPosRankSum=0.00;SOR=3.021 GT:AD:DP:GQ:PL 0/0:49,0:49:99:0,110,1083 0/0:49,0:49:99:0,120,1800 0/0:48,0:48:99:0,120,1800 0/1:29,20:49:99:386,0,753 0/0:52,0:52:99:0,111,1487 0/0:40,0:40:99:0,107,1124 0/0:42,0:42:99:0,102,700 0/0:50,0:50:99:0,118,1655 0/0:53,0:53:99:0,120,1800 0/0:47,0:47:99:0,103,1340 0/0:51,0:51:99:0,102,1362 0/0:55,0:55:99:0,100,1629 0/0:55,0:55:99:0,120,1800 0/0:51,0:51:99:0,120,1800 0/0:35,0:35:99:0,105,861 0/0:79,0:79:99:0,120,1800 0/0:74,0:74:99:0,120,1800 0/0:38,0:38:99:0,114,914 0/0:84,0:84:99:0,120,1800 0/0:48,0:48:99:0,119,1392 0/0:50,0:50:99:0,120,1800 0/0:51,0:51:99:0,120,1800 1/1:0,49:50:99:1267,147,0 0/0:47,0:47:99:0,113,1305 0/0:48,0:48:99:0,120,1800 0/0:50,0:50:99:0,120,1800 0/0:49,0:49:99:0,120,1800 0/0:49,0:49:99:0,104,1332 0/0:41,0:41:99:0,112,1072 0/0:53,0:53:99:0,120,1800 0/0:50,0:50:99:0,120,1800 0/0:49,0:49:99:0,120,1800 0/0:47,0:47:99:0,114,1544 1/1:0,43:43:99:1471,129,0 0/0:48,0:48:99:0,114,702 0/0:51,0:51:99:0,120,1800 0/0:49,0:49:99:0,120,1800 0/0:50,0:50:99:0,106,1487 0/0:46,0:46:99:0,115,1203 1/1:0,45:45:99:1604,135,0 1/1:0,47:47:99:1209,141,0 0/0:50,0:50:99:0,120,1800 0/0:53,0:53:99:0,116,1471 0/0:49,0:49:99:0,112,1338 0/0:50,0:50:99:0,120,1800 0/0:51,0:51:99:0,120,1800 0/0:48,0:48:99:0,120,1800 0/0:49,0:49:99:0,105,1411 0/0:48,0:48:99:0,120,1800 0/0:48,0:48:99:0,120,1800 0/0:49,0:49:99:0,113,1443 0/0:48,0:48:99:0,119,1484 0/0:60,0:60:99:0,120,1800 0/0:50,0:50:99:0,120,1800 0/0:48,0:48:99:0,120,1800 0/0:53,0:53:99:0,120,1800 0/0:48,0:48:99:0,120,1800 0/0:50,0:50:99:0,120,1389 0/0:49,0:49:99:0,120,1800 0/0:48,0:48:99:0,116,1493 0/0:50,0:50:99:0,118,1418 0/0:49,0:49:99:0,120,1800 0/0:49,0:49:99:0,110,1310 0/0:45,0:45:99:0,104,1316 0/0:48,0:48:99:0,113,1436 0/0:50,0:50:99:0,120,1800 0/0:50,0:50:99:0,120,1800 NW_016690191.1 6039021 . C T 16513.3 . AC=27;AF=0.017;AN=1626;BaseQRankSum=6.35;DP=39172;ExcessHet=0.0001;FS=1.503;InbreedingCoeff=0.4519;MLEAC=28;MLEAF=0.017;MQ=60.00;MQRankSum=0.00;QD=14.85;ReadPosRankSum=0.00;SOR=1.283 GT:AD:DP:GQ:PL 0/0:48,0:48:99:0,120,1800 0/1:20,29:49:99:853,0,448 0/0:50,0:50:99:0,120,1800 0/0:49,0:49:99:0,114,988 0/0:51,0:51:99:0,120,1800 0/0:49,0:49:99:0,110,1529 0/0:52,0:52:99:0,120,1800 0/0:48,0:48:99:0,117,1561 0/0:51,0:51:99:0,112,1433 0/0:47,0:47:99:0,120,1800 0/0:48,0:48:99:0,120,1800 0/0:50,0:50:99:0,114,1049 0/0:51,0:51:99:0,116,1131 0/0:34,0:34:99:0,102,823 0/0:20,0:20:60:0,60,494 0/0:38,0:38:99:0,108,1620 0/0:51,0:51:99:0,120,1800 0/0:33,0:33:99:0,99,799 0/1:46,36:84:99:636,0,858 0/0:48,0:48:99:0,110,1071 0/0:50,0:50:99:0,120,1534 0/0:47,0:47:99:0,120,1800 0/0:49,0:49:99:0,120,1800 0/0:48,0:48:99:0,115,1510 0/0:49,0:49:99:0,120,1800 0/0:51,0:51:99:0,120,1800 0/0:53,0:53:99:0,120,1800 0/0:47,0:47:99:0,115,1181 0/0:49,0:49:99:0,120,1800 0/0:56,0:56:99:0,120,1800 0/0:49,0:49:99:0,120,1800 0/0:49,0:49:99:0,116,1301 0/0:48,0:48:99:0,118,1507 0/0:48,0:48:99:0,120,1800 0/0:49,0:49:99:0,120,1800 0/0:49,0:49:99:0,116,957 0/0:49,0:49:99:0,115,1592 0/0:47,0:47:99:0,120,1089 0/0:49,0:49:99:0,120,1800 0/0:49,0:49:99:0,117,1312 0/0:51,0:51:99:0,120,1800 0/0:50,0:50:99:0,120,1800 0/0:50,0:50:99:0,120,1800 0/0:51,0:51:99:0,120,1800 0/0:48,0:48:99:0,120,1800 0/0:49,0:49:99:0,120,1800 0/0:48,0:48:99:0,105,1316 0/0:48,0:48:99:0,119,1525 0/1:28,18:46:99:423,0,657 0/0:49,0:49:99:0,120,1186 0/0:50,0:50:99:0,120,1800 0/0:47,0:47:99:0,117,1179 0/0:56,0:56:99:0,120,1800 0/0:50,0:50:99:0,120,1800 0/0:50,0:50:99:0,118,1136 0/0:49,0:49:99:0,120,1800 0/0:54,0:54:99:0,120,1800 0/0:49,0:49:99:0,120,1800 0/0:50,0:50:99:0,120,1800 0/0:47,0:47:99:0,120,1800 0/0:50,0:50:99:0,120,1800 0/0:51,0:51:99:0,120,1800 0/0:50,0:50:99:0,120,1800 0/0:49,0:49:99:0,120,1800 0/0:50,0:50:99:0,120,1800 0/0:51,0:51:99:0,102,1221 0/0:48,0:48:99:0,120,1800 NW_016690191.1 6141681 . T C 2095.92 . AC=5;AF=3.083e-03;AN=1622;BaseQRankSum=1.53;DP=56383;ExcessHet=0.0000;FS=0.000;InbreedingCoeff=0.6117;MLEAC=4;MLEAF=2.466e-03;MQ=60.00;MQRankSum=0.00;QD=23.82;ReadPosRankSum=1.53;SOR=4.849 GT:AD:DP:GQ:PL 0/0:78,0:78:99:0,120,1800 0/0:70,0:70:99:0,120,1800 0/0:99,0:99:99:0,120,1800 0/0:81,0:81:99:0,120,1800 0/0:54,0:54:99:0,120,1800 0/0:72,0:72:99:0,120,1800 0/0:61,0:61:99:0,120,1800 0/0:54,0:54:99:0,120,1800 0/0:112,0:112:99:0,120,1800 0/0:74,0:74:99:0,120,1800 0/0:126,0:126:99:0,120,1800 0/0:60,0:60:99:0,120,1800 0/0:72,0:72:99:0,120,1800 0/0:46,0:46:99:0,102,1229 0/0:35,0:35:99:0,99,1485 0/0:85,0:85:99:0,120,1800 0/0:64,0:64:99:0,99,1485 0/0:46,0:46:99:0,120,1800 0/0:44,0:44:99:0,99,1485 0/0:49,0:49:99:0,115,1370 0/0:60,0:60:99:0,120,1800 0/0:76,0:76:99:0,120,1800 0/0:123,0:123:99:0,120,1800 0/0:64,0:64:99:0,120,1800 0/0:53,0:53:99:0,120,1800 0/0:80,0:80:99:0,120,1800 0/0:76,0:76:99:0,120,1800 0/0:91,0:91:99:0,120,1800 0/0:56,0:56:99:0,105,1481 0/0:80,0:80:99:0,120,1800 0/0:65,0:65:99:0,110,1598 0/0:102,0:102:99:0,120,1800 0/0:66,0:66:99:0,120,1800 0/0:121,0:121:99:0,120,1800 0/0:59,0:59:99:0,120,1800 0/0:66,0:66:99:0,120,1800 0/0:78,0:78:99:0,117,1800 0/0:78,0:78:99:0,120,1800 0/0:61,0:61:99:0,120,1800 ./.:7,1:8:8:8,0,177 0/0:76,0:76:99:0,120,1800 0/0:112,0:112:99:0,120,1800 0/0:73,0:73:99:0,120,1800 0/0:55,0:55:99:0,120,1800 1/1:0,44:44:99:1075,131,0 1/1:0,44:44:99:1124,132,0 0/0:63,0:63:99:0,120,1800 0/0:111,0:111:99:0,120,1800 0/0:57,0:57:99:0,120,1800 0/0:88,0:88:99:0,120,1800 0/0:88,0:88:99:0,120,1800 0/0:61,0:61:99:0,120,1800 0/0:122,0:122:99:0,120,1800 0/0:99,0:99:99:0,120,1800 0/0:63,0:63:99:0,120,1800 0/0:73,0:73:99:0,120,1800 0/0:54,0:54:99:0,120,1800 0/0:55,0:55:99:0,120,1800 0/0:69,0:69:99:0,120,1800 0/0:71,0:71:99:0,120,1800 0/0:67,0:67:99:0,120,1800 0/0:70,0:70:99:0,120,1800 0/0:56,0:56:99:0,120,1800 0/0:60,0:60:99:0,120,1800 0/0:114,0:114:99:0,120,1800 0/0:65,0:65:99:0,120,1800 0/0:49,0:49:99:0,110,1325 NW_016690191.1 7520607 . G T 5160.91 . AC=8;AF=4.902e-03;AN=1632;BaseQRankSum=6.44;DP=40169;ExcessHet=3.0852;FS=0.000;InbreedingCoeff=0.4526;MLEAC=8;MLEAF=4.902e-03;MQ=60.00;MQRankSum=0.00;QD=11.42;ReadPosRankSum=0.00;SOR=0.702 GT:AD:DP:GQ:PL 0/0:51,0:51:99:0,120,1800 0/0:53,0:53:99:0,116,1444 0/0:51,0:51:99:0,120,1800 0/0:50,0:50:99:0,120,1800 0/0:52,0:52:99:0,109,1456 0/0:51,0:51:99:0,119,1648 0/0:54,0:54:99:0,120,1800 0/0:48,0:48:99:0,116,1572 0/0:52,0:52:99:0,120,1800 0/0:51,0:51:99:0,104,1504 0/0:50,0:50:99:0,119,1700 0/0:50,0:50:99:0,120,1800 0/0:52,0:52:99:0,111,1658 0/0:27,0:27:81:0,81,651 0/0:35,0:35:99:0,102,955 0/0:34,0:34:99:0,99,831 0/0:38,0:38:99:0,99,1485 0/0:43,0:43:99:0,104,1031 0/0:60,0:60:99:0,120,1800 0/0:51,0:51:99:0,120,1800 0/0:48,0:48:99:0,119,1518 0/0:49,0:49:99:0,119,1248 0/0:54,0:54:99:0,119,1671 0/0:51,0:51:99:0,120,1800 0/0:49,0:49:99:0,120,1800 ./.:0,0:0:.:0,0,0 0/0:51,0:51:99:0,120,1800 0/0:46,0:46:99:0,120,984 0/0:51,0:51:99:0,120,1800 0/0:54,0:54:99:0,120,1800 0/0:48,0:48:99:0,120,1800 0/0:54,0:54:99:0,104,1507 0/0:56,0:56:99:0,102,1658 0/0:52,0:52:99:0,108,1431 0/0:52,0:52:99:0,120,1800 0/0:50,0:50:99:0,117,1534 0/0:53,0:53:99:0,120,1800 0/0:51,0:51:99:0,120,1800 0/0:50,0:50:99:0,120,1800 0/0:51,0:51:99:0,120,1800 0/0:52,0:52:99:0,120,1459 0/0:49,0:49:99:0,120,1800 0/0:49,0:49:99:0,120,1800 0/1:24,26:50:99:616,0,141 0/0:50,0:50:99:0,118,1296 0/0:50,0:50:99:0,101,1214 0/0:52,0:52:99:0,120,1800 0/0:48,0:48:99:0,114,1394 0/0:51,0:51:99:0,118,1400 0/0:55,0:55:99:0,120,1800 0/0:51,0:51:99:0,120,1800 0/0:49,0:49:99:0,120,1800 0/0:53,0:53:99:0,116,1741 0/0:52,0:52:99:0,120,1800 0/0:51,0:51:99:0,120,1800 0/0:50,0:50:99:0,120,1800 0/0:50,0:50:99:0,116,1421 0/1:27,25:52:99:578,0,434 0/0:51,0:51:99:0,120,1800 0/1:22,29:51:99:708,0,119 0/0:48,0:48:99:0,102,1225 0/0:50,0:50:99:0,120,1800 0/0:50,0:50:99:0,104,1283 0/0:53,0:53:99:0,100,1475 0/0:50,0:50:99:0,120,1800 0/0:51,0:51:99:0,120,1800 0/0:52,0:52:99:0,120,1800 NW_016690191.1 7598375 . T G 2215.44 . 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T C 31038.3 . 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C T 3322 . 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G A 26794.8 . 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A G 39376 . 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A G 75938.9 . 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NW_016690211.1 3038835 . C T 2476.54 . 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C T 2133.48 . 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T C 16943.6 . 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NW_016690201.1 7358710 . C T 260309 . 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NW_016690202.1 376950 . C T 2142.59 . 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T C 6735.19 . 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T A 18226.8 . 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G A 65764 . 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C T 15121.1 . AC=16;AF=0.010;AN=1598;BaseQRankSum=8.91;DP=39603;ExcessHet=0.0046;FS=2.300;InbreedingCoeff=0.4939;MLEAC=17;MLEAF=0.011;MQ=60.00;MQRankSum=0.00;QD=14.81;ReadPosRankSum=9.80;SOR=1.044 GT:AD:DP:GQ:PL 0/0:52,0:52:99:0,116,1746 0/1:49,47:96:99:1389,0,1001 0/0:48,0:48:99:0,99,1016 0/0:52,0:52:99:0,107,1360 0/0:50,0:50:99:0,115,1286 0/0:50,0:50:99:0,120,1800 0/0:48,0:48:99:0,99,1272 0/0:52,0:52:99:0,113,1385 0/0:51,0:51:99:0,102,1387 ./.:0,0:0:.:0,0,0 0/0:51,0:51:99:0,114,1602 0/0:57,0:57:99:0,120,1800 0/0:52,0:52:99:0,118,1368 0/0:49,0:49:99:0,120,1800 0/0:39,0:39:99:0,114,1710 0/0:109,0:109:99:0,120,1800 0/0:105,0:105:99:0,120,1800 0/0:50,0:50:99:0,120,1800 0/0:122,0:122:99:0,120,1800 0/0:51,0:51:99:0,113,1283 0/0:47,0:47:99:0,99,1255 0/0:47,0:47:99:0,100,1296 0/0:52,0:52:99:0,104,1208 0/0:55,0:55:99:0,107,1495 0/0:47,0:47:99:0,101,1388 0/0:48,0:48:99:0,112,1394 0/0:47,0:47:99:0,103,1215 0/0:49,0:49:99:0,120,1800 0/0:53,0:53:99:0,113,970 0/0:50,0:50:99:0,112,1416 0/0:51,0:51:99:0,113,1373 0/0:52,0:52:99:0,118,1314 0/0:49,0:49:99:0,108,1218 0/0:49,0:49:99:0,100,1229 0/0:49,0:49:99:0,120,1800 0/0:49,0:49:99:0,106,1436 0/0:51,0:51:99:0,120,1473 0/0:51,0:51:99:0,112,1089 0/0:49,0:49:99:0,107,1390 0/0:48,0:48:99:0,116,1436 0/0:48,0:48:99:0,109,1174 ./.:0,0:0:.:0,0,0 0/0:48,0:48:99:0,120,1800 0/0:51,0:51:99:0,109,963 0/0:47,0:47:99:0,120,1800 0/0:50,0:50:99:0,110,1076 0/0:53,0:53:99:0,120,1800 0/0:51,0:51:99:0,120,1800 1/1:0,49:49:99:1501,146,0 0/1:27,31:59:99:753,0,609 0/0:51,0:51:99:0,119,1282 ./.:7,0:7:21:0,21,149 0/0:60,0:60:66:0,66,1466 0/0:56,0:56:99:0,120,1800 0/0:51,0:51:99:0,99,1566 0/0:48,0:48:99:0,106,1417 0/0:51,0:51:99:0,104,1371 0/0:51,0:51:99:0,120,1800 0/0:47,0:47:99:0,109,1271 0/0:54,0:54:99:0,120,1800 0/0:51,0:51:99:0,111,1423 ./.:1,0:1:3:0,3,20 0/0:48,0:48:99:0,103,1332 0/0:51,0:51:99:0,115,1515 0/0:51,0:51:99:0,114,1454 0/0:52,0:52:99:0,100,1253 0/0:50,0:50:99:0,111,1049 NW_016690205.1 2550943 . C T 189543 . 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C T 10222.6 . 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T C 30065.8 . 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C T 117656 . 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C T 51650.3 . 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T A 7513.1 . 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AC=4;AF=2.439e-03;AN=1640;DP=39624;ExcessHet=0.0000;FS=0.000;InbreedingCoeff=0.6577;MLEAC=4;MLEAF=2.439e-03;MQ=60.00;QD=23.62;SOR=9.210 GT:AD:DP:GQ:PL 0/0:49,0:49:99:0,116,1512 0/0:49,0:49:99:0,120,1800 0/0:49,0:49:99:0,120,1800 0/0:50,0:50:99:0,120,1800 0/0:50,0:50:99:0,120,1800 0/0:49,0:49:99:0,120,1800 0/0:49,0:49:99:0,120,1800 0/0:49,0:49:99:0,120,1800 0/0:50,0:50:99:0,120,1800 0/0:50,0:50:99:0,120,1800 0/0:50,0:50:99:0,116,1457 0/0:50,0:50:99:0,108,1531 0/0:50,0:50:99:0,120,1800 0/0:33,0:33:99:0,99,808 0/0:39,0:39:91:0,91,906 0/0:59,0:59:99:0,120,1800 0/0:45,0:45:99:0,110,856 0/0:59,0:59:99:0,120,1800 0/0:160,0:160:99:0,120,1800 0/0:47,0:47:99:0,113,1492 0/0:49,0:49:99:0,116,1563 0/0:50,0:50:99:0,116,1553 0/0:50,0:50:99:0,120,1800 0/0:49,0:49:99:0,114,1432 0/0:49,0:49:99:0,120,1800 0/0:50,0:50:99:0,120,1800 0/0:49,0:49:99:0,120,1800 0/0:48,0:48:99:0,120,1800 0/0:49,0:49:99:0,120,1800 0/0:48,0:48:99:0,118,1366 0/0:49,0:49:99:0,120,1800 0/0:50,0:50:99:0,120,1800 0/0:49,0:49:99:0,120,1800 0/0:50,0:50:99:0,120,1800 0/0:49,0:49:99:0,120,1800 0/0:50,0:50:99:0,120,1800 0/0:50,0:50:99:0,120,1800 0/0:49,0:49:99:0,120,1800 0/0:49,0:49:99:0,120,1800 0/0:49,0:49:99:0,120,1800 0/0:49,0:49:99:0,120,1800 0/0:49,0:49:99:0,120,1800 0/0:49,0:49:99:0,120,1800 0/0:49,0:49:99:0,120,1800 1/1:0,50:50:99:1232,150,0 1/1:0,49:49:99:1210,147,0 0/0:49,0:49:99:0,120,1613 0/0:50,0:50:99:0,120,1800 0/0:49,0:49:99:0,117,1320 0/0:50,0:50:99:0,120,1800 0/0:49,0:49:99:0,108,1380 0/0:50,0:50:99:0,108,1503 0/0:50,0:50:99:0,120,1800 0/0:50,0:50:99:0,115,1321 0/0:50,0:50:99:0,116,1599 0/0:50,0:50:99:0,120,1800 0/0:47,0:47:99:0,120,1800 0/0:49,0:49:99:0,120,1800 0/0:49,0:49:99:0,120,1800 0/0:49,0:49:99:0,119,1459 0/0:48,0:48:99:0,118,1294 0/0:50,0:50:99:0,117,1403 0/0:49,0:49:99:0,119,1225 0/0:49,0:49:99:0,120,1800 0/0:49,0:49:99:0,120,1800 0/0:49,0:49:99:0,114,1643 0/0:49,0:49:99:0,117,1606 NW_016690240.1 1908546 . C T 6506.03 . AC=6;AF=3.686e-03;AN=1628;BaseQRankSum=6.27;DP=41558;ExcessHet=3.0505;FS=0.000;InbreedingCoeff=0.5301;MLEAC=6;MLEAF=3.686e-03;MQ=60.00;MQRankSum=0.00;QD=17.73;ReadPosRankSum=-3.570e-01;SOR=0.576 GT:AD:DP:GQ:PGT:PID:PL:PS 0/0:52,0:52:99:.:.:0,120,1800:. 0/0:53,0:53:99:.:.:0,120,1800:. 0/0:51,0:51:99:.:.:0,120,1800:. 0/0:50,0:50:99:.:.:0,120,1800:. 0/0:52,0:52:99:.:.:0,119,1422:. 0/0:51,0:51:99:.:.:0,108,1374:. 0/0:50,0:50:99:.:.:0,105,1396:. 0/0:53,0:53:99:.:.:0,110,1504:. 0/0:52,0:52:99:.:.:0,106,1210:. 0/0:52,0:52:99:.:.:0,116,1453:. 0/0:47,0:47:99:.:.:0,119,1407:. 0/0:53,0:53:99:.:.:0,102,1512:. 0/0:52,0:52:99:.:.:0,120,1800:. 0/0:97,0:97:99:.:.:0,120,1800:. 0/0:37,0:37:99:.:.:0,99,1485:. 0/0:34,0:34:99:.:.:0,102,826:. 0/0:33,0:33:99:.:.:0,99,778:. 0/0:42,0:42:99:.:.:0,102,1530:. 0/0:177,0:177:99:.:.:0,120,1800:. 0/0:51,0:51:99:.:.:0,117,1446:. 0/0:51,0:51:99:.:.:0,120,1800:. 0/0:52,0:52:99:.:.:0,120,1312:. 0/0:55,0:55:99:.:.:0,115,1548:. 0/0:49,0:49:99:.:.:0,119,1594:. 0/0:47,0:47:99:.:.:0,120,1800:. 0/0:50,0:50:99:.:.:0,120,1800:. 0/0:50,0:50:99:.:.:0,120,1800:. 0/0:49,0:49:99:.:.:0,120,1800:. 0/0:47,0:47:99:.:.:0,109,1352:. 0/0:50,0:50:99:.:.:0,120,1800:. 0/0:51,0:51:99:.:.:0,120,1800:. 0/0:51,0:51:99:.:.:0,99,1530:. 0|1:38,15:53:99:0|1:1908546_C_T:515,0,1550:1908546 0/0:51,0:51:99:.:.:0,120,1800:. 0/0:46,0:46:99:.:.:0,120,1800:. 0/0:49,0:49:99:.:.:0,112,1351:. 0/0:53,0:53:99:.:.:0,120,1800:. 0/0:50,0:50:99:.:.:0,105,1401:. 0/0:49,0:49:99:.:.:0,120,1378:. 0/0:53,0:53:99:.:.:0,99,1115:. 0/0:50,0:50:99:.:.:0,117,1435:. 0|1:47,51:98:99:0|1:1908546_C_T:2000,0,1813:1908546 0/0:52,0:52:99:.:.:0,103,1462:. 0/0:49,0:49:99:.:.:0,120,1800:. 0/0:47,0:47:99:.:.:0,119,1218:. 0/0:50,0:50:99:.:.:0,120,1800:. 0/0:55,0:55:99:.:.:0,116,1710:. 0/0:50,0:50:99:.:.:0,120,1800:. 0/0:49,0:49:99:.:.:0,115,1344:. 0/0:57,0:57:99:.:.:0,104,1216:. 0/0:52,0:52:99:.:.:0,120,1800:. 0/0:48,0:48:99:.:.:0,113,1234:. 0/0:56,0:56:99:.:.:0,102,1347:. 0/0:51,0:51:99:.:.:0,115,1454:. 0/0:52,0:52:99:.:.:0,120,1800:. 0/0:52,0:52:99:.:.:0,120,1800:. 0/0:57,0:57:99:.:.:0,100,1800:. 0/0:50,0:50:99:.:.:0,120,1800:. 0/0:55,0:55:99:.:.:0,105,1372:. 0/0:49,0:49:99:.:.:0,106,1291:. 0/0:48,0:48:83:.:.:0,83,1200:. 0|1:24,29:53:99:0|1:1908546_C_T:1145,0,920:1908546 0/0:50,0:50:99:.:.:0,120,1800:. 0/0:54,0:54:99:.:.:0,107,1576:. 0/0:52,0:52:99:.:.:0,120,1800:. 0/0:54,0:54:99:.:.:0,103,1548:. 0/0:51,0:51:99:.:.:0,120,1800:. NW_016690240.1 3739658 . A G 2466.28 . AC=5;AF=3.064e-03;AN=1632;BaseQRankSum=-6.288e+00;DP=39063;ExcessHet=0.0133;FS=0.000;InbreedingCoeff=0.5671;MLEAC=5;MLEAF=3.064e-03;MQ=60.00;MQRankSum=0.00;QD=12.58;ReadPosRankSum=0.00;SOR=1.184 GT:AD:DP:GQ:PL 0/0:49,0:49:99:0,119,1418 0/0:47,0:47:99:0,120,1800 0/0:49,0:49:99:0,120,1800 0/0:46,0:46:99:0,117,1444 0/0:48,0:48:99:0,115,1290 0/0:50,0:50:99:0,110,1395 0/0:49,0:49:99:0,117,1524 0/0:48,0:48:99:0,116,1284 0/0:50,0:50:99:0,120,1800 0/0:49,0:49:99:0,120,1800 0/0:48,0:48:99:0,103,1502 0/0:48,0:48:99:0,113,1338 0/0:50,0:50:99:0,117,1497 0/0:39,0:39:99:0,99,984 0/0:38,0:38:99:0,102,919 0/0:34,0:34:99:0,99,831 0/0:33,0:33:99:0,99,771 0/0:38,0:38:99:0,106,932 0/0:74,0:74:99:0,120,1800 0/0:48,0:48:99:0,119,1362 0/0:49,0:49:99:0,120,1800 0/0:49,0:49:99:0,116,1466 0/0:49,0:49:99:0,117,1378 0/0:49,0:49:99:0,120,1800 0/0:50,0:50:99:0,119,1682 0/0:51,0:51:99:0,99,1220 0/0:50,0:50:99:0,120,1800 0/0:48,0:48:99:0,120,1800 0/0:48,0:48:99:0,120,1800 0/0:49,0:49:99:0,120,1800 0/0:48,0:48:99:0,120,1800 0/0:49,0:49:99:0,120,1800 0/0:50,0:50:99:0,108,1401 0/0:47,0:47:99:0,116,1325 0/0:49,0:49:99:0,120,1800 0/0:48,0:48:99:0,120,1800 0/0:48,0:48:99:0,118,1382 0/0:48,0:48:99:0,108,1210 0/1:30,18:48:99:356,0,744 0/0:49,0:49:99:0,120,1800 0/0:49,0:49:99:0,120,1800 0/0:50,0:50:99:0,120,1800 0/0:48,0:48:99:0,120,1800 0/0:50,0:50:99:0,120,1800 ./.:4,0:4:12:0,12,92 ./.:0,0:0:.:0,0,0 0/0:48,0:48:99:0,118,1292 0/0:49,0:49:99:0,101,1320 0/0:49,0:49:99:0,120,1277 0/0:52,0:52:99:0,120,1800 0/0:50,0:50:99:0,103,1398 0/0:50,0:50:99:0,120,1800 0/0:51,0:51:99:0,120,1800 0/0:51,0:51:99:0,120,1800 0/0:47,0:47:99:0,113,1346 0/0:49,0:49:99:0,120,1800 0/0:52,0:52:99:0,120,1800 0/0:48,0:48:99:0,120,1800 0/0:49,0:49:99:0,120,1800 0/1:23,29:52:99:580,0,528 1/1:0,49:49:99:1240,146,0 0/0:49,0:49:99:0,120,1800 0/0:48,0:48:99:0,120,1800 0/0:49,0:49:99:0,120,1800 0/0:49,0:49:99:0,120,1800 0/0:48,0:48:99:0,105,1545 0/0:49,0:49:99:0,114,1137 NW_016690240.1 3881205 . C T 40347.7 . 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C T 189485 . 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AC=30;AF=0.018;AN=1630;BaseQRankSum=2.82;DP=41432;ExcessHet=-0.0000;FS=0.000;InbreedingCoeff=0.7851;MLEAC=31;MLEAF=0.019;MQ=60.00;MQRankSum=0.00;QD=11.15;ReadPosRankSum=0.00;SOR=11.750 GT:AD:DP:GQ:PL 0/0:57,0:57:99:0,115,1800 0/0:55,0:55:99:0,115,1261 0/0:52,0:52:99:0,114,1216 0/0:52,0:52:99:0,115,1431 0/0:55,0:55:99:0,120,1800 0/0:57,0:57:99:0,120,1800 0/0:56,0:56:99:0,103,1445 0/0:53,0:53:99:0,118,1526 0/0:51,0:51:99:0,120,1800 0/0:53,0:53:99:0,120,1800 0/0:51,0:51:99:0,120,1800 0/0:56,0:56:99:0,120,1800 0/0:58,0:58:99:0,120,1800 0/0:48,0:48:99:0,120,1800 0/0:42,0:42:99:0,102,1530 0/0:33,0:33:99:0,99,811 0/0:44,0:44:99:0,109,1205 0/0:34,0:34:99:0,99,856 0/0:156,0:156:99:0,120,1800 0/0:55,0:55:99:0,112,1582 0/0:50,0:50:99:0,120,1800 0/0:51,0:51:99:0,105,1511 1/1:0,55:55:99:1228,163,0 0/0:63,0:63:99:0,101,1610 0/0:51,0:51:99:0,120,1800 0/0:45,0:45:99:0,115,1214 0/0:49,0:49:99:0,120,1800 0/0:51,0:51:99:0,109,1165 0/0:49,0:49:99:0,113,1077 0/0:56,0:56:99:0,99,1527 0/0:49,0:49:99:0,103,1104 0/0:52,0:52:99:0,120,1800 0/0:46,0:46:99:0,115,1365 1/1:0,45:45:99:428,115,0 1/1:0,47:47:99:447,120,0 1/1:0,46:46:99:470,119,0 1/1:0,45:46:99:428,115,0 1/1:0,44:44:99:419,112,0 0/0:42,0:42:99:0,120,1800 1/1:0,51:51:99:542,132,0 1/1:0,49:49:99:561,128,0 0/0:52,0:52:99:0,104,1345 0/0:51,0:51:99:0,107,1333 0/0:49,0:49:99:0,115,1251 0/0:52,0:52:99:0,103,1253 0/0:52,0:52:99:0,120,1800 0/0:56,0:56:99:0,120,1800 0/0:50,0:50:99:0,120,1800 0/0:49,0:49:99:0,115,1268 0/0:68,0:68:99:0,120,1800 0/0:55,0:55:99:0,120,1800 0/0:48,0:48:99:0,106,1146 0/0:51,0:51:99:0,119,1475 0/0:53,0:53:99:0,120,1800 0/0:51,0:51:99:0,120,1800 0/0:54,0:54:99:0,99,1255 0/0:48,0:48:99:0,120,1800 0/0:51,0:51:99:0,109,1097 0/0:51,0:51:99:0,120,1800 0/0:49,0:49:99:0,119,1437 0/0:52,0:52:99:0,107,1089 0/0:51,0:51:99:0,120,1800 0/0:49,0:49:99:0,108,1341 0/0:53,0:53:99:0,101,1253 0/0:51,0:51:99:0,115,1616 0/0:53,0:53:99:0,120,1800 0/0:52,0:52:99:0,102,1414 NW_016690241.1 1380397 . A G 63032 . AC=92;AF=0.057;AN=1614;BaseQRankSum=-5.300e-01;DP=39221;ExcessHet=0.0000;FS=0.000;InbreedingCoeff=0.4501;MLEAC=96;MLEAF=0.059;MQ=60.00;MQRankSum=0.00;QD=17.96;ReadPosRankSum=0.00;SOR=0.884 GT:AD:DP:GQ:PL 0/0:49,0:49:99:0,110,1529 0/1:23,25:48:99:703,0,633 0/0:51,0:51:99:0,120,1800 0/0:53,0:53:99:0,120,1800 0/0:49,0:49:99:0,120,1800 0/0:49,0:49:99:0,118,1329 0/0:48,0:48:99:0,120,1800 0/0:49,0:49:99:0,118,1379 0/0:51,0:51:99:0,120,1800 0/0:50,0:50:99:0,101,1355 0/0:49,0:49:99:0,120,1800 0/0:50,0:50:99:0,114,1663 0/0:51,0:51:99:0,120,1800 0/0:36,0:36:99:0,102,891 0/0:33,0:33:99:0,99,830 0/0:64,0:64:99:0,120,1800 0/0:52,0:52:99:0,120,1800 0/1:17,32:49:99:629,0,268 0/0:81,0:81:99:0,120,1800 0/0:49,0:49:99:0,120,1800 0/0:49,0:49:99:0,118,1458 0/0:46,0:46:99:0,116,1349 0/0:48,0:48:99:0,120,1800 0/0:49,0:49:99:0,106,1454 0/0:50,0:50:99:0,120,1800 0/0:51,0:51:99:0,120,1800 0/0:49,0:49:99:0,120,1800 0/0:48,0:48:99:0,120,1800 0/0:49,0:49:99:0,104,898 0/0:50,0:50:99:0,120,1800 0/0:49,0:49:99:0,119,1298 0/0:48,0:48:99:0,120,1800 0/0:49,0:49:99:0,120,1800 0/0:50,0:50:99:0,120,1800 0/0:51,0:51:99:0,120,1800 0/0:50,0:50:99:0,120,1800 0/0:52,0:52:99:0,120,1800 0/0:50,0:50:99:0,120,1800 0/0:50,0:50:99:0,120,1800 0/0:50,0:50:99:0,120,1800 0/0:50,0:50:99:0,120,1800 0/0:52,0:52:99:0,120,1800 0/0:51,0:51:99:0,114,1467 0/0:51,0:51:99:0,120,1800 0/0:49,0:49:99:0,120,1800 0/0:48,0:48:99:0,120,1800 1/1:0,46:46:99:1492,138,0 0/1:27,22:49:99:546,0,679 0/0:49,0:49:99:0,120,1800 0/0:51,0:51:99:0,116,1528 0/0:52,0:52:99:0,120,1800 0/0:50,0:50:99:0,118,1410 0/0:56,0:56:99:0,120,1800 0/0:49,0:49:99:0,120,1800 0/0:49,0:49:99:0,120,1800 0/0:54,0:54:99:0,120,1800 0/0:47,0:47:99:0,108,1288 0/0:49,0:49:99:0,120,1800 0/0:50,0:50:99:0,120,1800 0/0:54,0:54:99:0,120,1800 0/0:50,0:50:99:0,120,1800 0/0:52,0:52:99:0,120,1800 0/0:51,0:51:99:0,120,1800 0/0:50,0:50:99:0,119,1368 0/0:47,0:47:99:0,120,1800 0/0:48,0:48:99:0,115,1576 0/0:48,0:48:99:0,120,1800 NW_016690241.1 1510905 . T C 15811.7 . AC=22;AF=0.013;AN=1636;BaseQRankSum=-5.876e+00;DP=39480;ExcessHet=0.0000;FS=0.000;InbreedingCoeff=0.6176;MLEAC=23;MLEAF=0.014;MQ=60.00;MQRankSum=0.00;QD=18.49;ReadPosRankSum=0.00;SOR=0.715 GT:AD:DP:GQ:PL 0/0:48,0:48:99:0,115,1376 0/0:49,0:49:99:0,115,1223 0/0:49,0:49:99:0,119,1516 0/0:48,0:48:99:0,120,1800 1/1:0,50:50:99:1383,150,0 0/0:49,0:49:99:0,120,1800 0/0:51,0:51:99:0,120,1800 0/0:49,0:49:99:0,119,1473 0/0:50,0:50:99:0,120,1800 0/0:49,0:49:99:0,117,1594 0/0:50,0:50:99:0,99,1312 0/0:49,0:49:99:0,120,1800 0/1:22,26:48:99:576,0,509 1/1:0,93:96:99:2215,277,0 0/0:42,0:42:99:0,102,1157 0/0:47,0:47:99:0,105,1575 0/1:59,60:119:99:1116,0,1044 0/0:33,0:33:99:0,99,820 0/0:154,0:154:99:0,120,1800 0/1:28,21:49:99:483,0,759 0/1:22,28:50:99:683,0,568 0/0:49,0:49:99:0,115,1491 0/0:49,0:49:99:0,120,1800 0/0:49,0:49:99:0,117,1420 0/0:49,0:49:99:0,120,1800 0/0:48,0:48:99:0,120,1800 0/0:48,0:48:99:0,115,1258 0/0:49,0:49:99:0,120,1800 0/0:50,0:50:99:0,119,1366 0/0:49,0:49:99:0,102,1365 0/0:49,0:49:99:0,118,1323 0/0:49,0:49:99:0,120,1800 0/0:50,0:50:99:0,113,1340 0/0:50,0:50:99:0,120,1800 0/0:50,0:50:99:0,120,1800 0/0:50,0:50:99:0,120,1800 0/0:47,0:47:99:0,120,1800 0/0:49,0:49:99:0,120,1800 0/0:49,0:49:99:0,109,1320 0/0:53,0:53:99:0,120,1800 0/0:49,0:49:99:0,120,1800 0/0:50,0:50:99:0,120,1800 0/0:47,0:47:99:0,120,1800 0/0:47,0:47:99:0,120,1800 0/0:49,0:49:99:0,120,1800 0/0:49,0:49:99:0,120,1800 0/0:50,0:50:99:0,120,1800 0/0:50,0:50:99:0,119,1538 0/0:48,0:48:99:0,99,1208 0/0:49,0:49:99:0,118,1394 0/0:50,0:50:99:0,118,1337 0/0:49,0:49:99:0,119,1450 0/0:48,0:48:99:0,119,1461 0/0:46,0:46:99:0,105,1251 0/0:48,0:48:99:0,102,1563 0/0:48,0:48:99:0,120,1800 0/0:46,0:46:99:0,100,1333 0/0:49,0:49:99:0,115,1342 0/0:48,0:48:99:0,120,1800 0/0:49,0:49:99:0,120,1800 0/0:49,0:49:99:0,109,1165 0/0:49,0:49:99:0,102,1458 0/0:50,0:50:99:0,106,1000 0/0:47,0:47:99:0,120,1800 0/0:48,0:48:99:0,119,1603 0/0:49,0:49:99:0,120,1800 0/0:49,0:49:99:0,115,1378 NW_016690241.1 2979202 . T A 13254.6 . AC=18;AF=0.011;AN=1636;DP=39739;ExcessHet=-0.0000;FS=0.000;InbreedingCoeff=0.7784;MLEAC=19;MLEAF=0.012;MQ=60.00;QD=29.52;SOR=12.219 GT:AD:DP:GQ:PL 0/0:49,0:49:99:0,119,1505 0/0:50,0:50:99:0,119,1082 0/0:52,0:52:99:0,120,1800 0/0:50,0:50:99:0,110,1354 0/0:52,0:52:99:0,99,1488 0/0:48,0:48:99:0,120,1800 0/0:51,0:51:99:0,120,1800 0/0:50,0:50:99:0,120,1800 0/0:50,0:50:99:0,109,1458 0/0:49,0:49:99:0,120,1800 0/0:48,0:48:99:0,120,1800 0/0:49,0:49:99:0,120,1800 0/0:50,0:50:99:0,108,1511 0/0:38,0:38:99:0,113,926 0/0:36,0:36:99:0,102,1015 0/0:39,0:39:99:0,99,964 0/0:47,0:47:99:0,114,1237 0/0:34,0:34:99:0,102,750 0/0:96,0:96:99:0,120,1800 0/0:49,0:49:99:0,118,1443 0/0:52,0:52:99:0,120,1800 0/0:49,0:49:99:0,118,1359 1/1:0,49:49:99:1528,147,0 0/0:47,0:47:99:0,106,1365 0/0:49,0:49:99:0,118,1347 0/0:49,0:49:99:0,114,1219 0/0:47,0:47:99:0,120,1800 0/0:49,0:49:99:0,120,1800 0/0:49,0:49:99:0,120,1800 0/0:52,0:52:99:0,120,1800 0/0:50,0:50:99:0,120,1800 0/0:52,0:52:99:0,111,1366 0/0:50,0:50:99:0,105,1400 1/1:0,49:49:99:1403,147,0 0/0:49,0:49:99:0,120,1800 0/0:50,0:50:99:0,120,1800 0/0:52,0:52:99:0,114,1419 0/0:51,0:51:99:0,120,1800 0/0:54,0:54:99:0,107,1356 1/1:0,50:50:99:1540,150,0 1/1:0,49:49:99:1543,147,0 0/0:53,0:53:99:0,120,1800 0/0:52,0:52:99:0,106,1353 0/0:49,0:49:99:0,120,1527 ./.:4,0:4:9:0,9,135 ./.:3,0:3:3:0,3,45 0/0:49,0:49:99:0,120,1800 0/0:48,0:48:99:0,120,1800 0/0:49,0:49:99:0,120,1800 0/0:51,0:51:99:0,120,1800 0/0:48,0:48:99:0,99,1509 0/0:48,0:48:99:0,101,1343 0/0:48,0:48:99:0,117,1263 0/0:51,0:51:99:0,113,1438 0/0:47,0:47:99:0,105,1506 0/0:53,0:53:99:0,120,1800 0/0:56,0:56:99:0,120,1800 0/0:54,0:54:99:0,120,1800 0/0:47,0:47:99:0,120,1800 0/0:51,0:51:99:0,120,1800 0/0:50,0:50:99:0,120,1800 0/0:48,0:48:99:0,120,1211 0/0:48,0:48:99:0,116,1482 0/0:49,0:49:99:0,107,1467 0/0:50,0:50:99:0,119,1575 0/0:47,0:47:99:0,115,1154 0/0:47,0:47:99:0,119,1548 NW_016690241.1 3655401 . G T 28770.1 . 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A G 1440.64 . 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C G 5607.89 . 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G A 10129.2 . 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G C 11687.5 . 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AC=277;AF=0.172;AN=1614;BaseQRankSum=-3.651e+00;DP=32744;ExcessHet=0.0000;FS=0.000;InbreedingCoeff=0.2861;MLEAC=290;MLEAF=0.180;MQ=60.00;MQRankSum=0.00;QD=16.02;ReadPosRankSum=0.00;SOR=0.750 GT:AD:DP:GQ:PL 0/1:29,21:50:99:529,0,850 0/0:48,0:48:99:0,120,1800 0/0:30,0:30:90:0,90,881 0/0:47,0:47:99:0,105,1399 0/0:48,0:48:99:0,120,1800 0/0:46,0:46:99:0,116,1020 0/0:47,0:47:99:0,120,1800 0/0:49,0:49:99:0,120,1800 0/0:49,0:49:99:0,120,1800 0/0:48,0:48:99:0,101,1422 0/0:50,0:50:99:0,108,1410 0/1:26,23:49:99:659,0,758 0/0:48,0:48:99:0,120,1800 0/0:47,0:47:99:0,120,1800 0/1:41,10:51:93:93,0,861 1/1:0,50:51:99:1221,149,0 0/0:48,0:48:99:0,100,1149 0/0:36,0:36:99:0,99,1485 0/0:42,0:42:99:0,120,1800 0/0:15,0:15:45:0,45,354 ./.:10,0:10:30:0,30,214 0/0:48,0:48:99:0,117,1477 0/0:49,0:49:99:0,120,1800 0/0:49,0:49:99:0,102,1546 0/0:49,0:49:99:0,120,1156 0/0:35,0:35:86:0,86,994 0/0:33,0:33:99:0,99,777 0/0:21,0:21:62:0,62,424 0/0:45,0:45:99:0,120,1800 0/0:49,0:49:99:0,120,1800 0/0:49,0:49:99:0,120,1800 0/0:48,0:48:99:0,120,1800 0/0:48,0:48:99:0,120,1800 0/0:50,0:50:99:0,120,1800 0/0:46,0:46:99:0,119,1311 0/0:49,0:49:99:0,120,1800 0/0:49,0:49:99:0,118,1615 0/0:48,0:48:99:0,120,1800 0/0:47,0:47:99:0,120,1800 0/0:48,0:48:99:0,120,1800 0/0:47,0:47:99:0,118,1390 0/0:49,0:49:99:0,101,1295 0/0:50,0:50:99:0,120,1800 0/0:47,0:47:99:0,118,1199 0/0:38,0:38:99:0,114,914 0/0:41,0:41:99:0,106,884 0/1:27,22:49:99:530,0,690 0/0:46,0:46:99:0,112,1385 0/1:26,20:46:99:435,0,631 0/0:47,0:47:99:0,120,1800 0/0:20,0:20:60:0,60,565 ./.:13,0:13:39:0,39,308 0/0:47,0:47:99:0,120,1800 0/0:50,0:50:99:0,108,1502 0/0:49,0:49:99:0,118,1740 0/0:48,0:48:99:0,120,1800 0/0:48,0:48:99:0,119,1535 0/0:17,0:17:51:0,51,468 0/0:43,0:43:99:0,104,945 0/0:48,0:48:99:0,120,1800 0/0:45,0:45:99:0,120,1800 0/0:48,0:48:99:0,120,1800 0/0:48,0:48:99:0,119,1308 0/0:50,0:50:99:0,120,1800 0/0:47,0:47:99:0,106,1219 0/0:48,0:48:99:0,115,1404 0/0:48,0:48:99:0,110,1615 NW_016690250.1 3034808 . C T 3502 . AC=6;AF=3.736e-03;AN=1606;BaseQRankSum=6.72;DP=34887;ExcessHet=3.0510;FS=0.000;InbreedingCoeff=0.5284;MLEAC=6;MLEAF=3.736e-03;MQ=60.00;MQRankSum=0.00;QD=11.95;ReadPosRankSum=0.00;SOR=0.700 GT:AD:DP:GQ:PL 0/0:48,0:48:99:0,120,1800 0/0:47,0:47:99:0,119,1477 0/0:15,0:15:45:0,45,341 0/0:45,0:45:99:0,102,1287 0/0:46,0:46:99:0,112,1316 0/0:48,0:48:99:0,117,1391 0/0:49,0:49:99:0,120,1461 0/0:48,0:48:99:0,118,1045 0/0:48,0:48:99:0,118,1691 0/0:49,0:49:99:0,118,1379 0/0:49,0:49:99:0,99,1485 0/0:49,0:49:99:0,120,1800 0/0:49,0:49:99:0,120,1800 0/0:33,0:33:99:0,99,761 0/0:36,0:36:99:0,99,883 0/0:38,0:38:99:0,114,915 0/0:46,0:46:99:0,120,1800 0/0:33,0:33:99:0,99,813 0/0:45,0:45:99:0,120,1800 0/0:48,0:48:99:0,120,1800 ./.:10,0:10:30:0,30,209 0/0:49,0:49:99:0,105,1342 0/0:48,0:48:99:0,120,1800 0/0:50,0:50:99:0,120,1800 0/0:49,0:49:99:0,120,1800 0/0:15,0:15:45:0,45,310 0/0:33,0:33:99:0,99,840 0/0:34,0:34:99:0,101,669 0/0:49,0:49:99:0,120,1800 0/0:47,0:47:99:0,120,1800 0/0:49,0:49:99:0,120,1800 0/0:49,0:49:99:0,120,1800 0/0:46,0:46:99:0,116,1320 0/0:49,0:49:99:0,120,1800 0/0:49,0:49:99:0,120,1800 0/0:51,0:51:99:0,120,1800 0/0:49,0:49:99:0,120,1800 0/0:51,0:51:99:0,120,1454 0/0:49,0:49:99:0,120,1800 0/0:49,0:49:99:0,120,1800 0/0:50,0:50:99:0,120,1800 0/0:51,0:51:99:0,120,1800 0/0:49,0:49:99:0,120,1800 0/1:24,23:47:99:566,0,525 0/0:47,0:47:99:0,107,931 0/0:48,0:48:99:0,120,1197 0/0:49,0:49:99:0,102,1504 0/0:45,0:45:99:0,99,1405 0/0:48,0:48:99:0,110,1255 0/0:48,0:48:99:0,120,1800 0/0:18,0:18:54:0,54,424 0/0:15,0:15:45:0,45,352 0/0:46,0:46:99:0,105,1537 0/0:49,0:49:99:0,104,1422 0/0:49,0:49:99:0,120,1800 0/0:50,0:50:99:0,120,1800 0/0:47,0:47:99:0,120,1485 0/1:24,26:50:99:649,0,495 0/0:48,0:48:99:0,120,1800 0/1:25,25:50:99:570,0,534 0/1:22,27:49:99:679,0,479 0/0:49,0:49:99:0,120,1800 0/0:49,0:49:99:0,120,1800 0/0:48,0:48:99:0,120,1495 0/0:48,0:48:99:0,119,1515 0/0:49,0:49:99:0,115,1664 0/0:49,0:49:99:0,112,1088 NW_016690250.1 3171030 . C A 1919.04 . 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T A 2988.64 . 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AC=25;AF=0.015;AN=1632;BaseQRankSum=-6.547e+00;DP=39047;ExcessHet=0.0000;FS=0.000;InbreedingCoeff=0.6367;MLEAC=26;MLEAF=0.016;MQ=60.00;MQRankSum=0.00;QD=5.45;ReadPosRankSum=6.87;SOR=2.371 GT:AD:DP:GQ:PL 0/0:49,0:49:99:0,116,1560 0/0:48,0:48:99:0,114,1411 0/0:49,0:49:99:0,120,1800 0/0:49,0:49:99:0,120,1800 0/0:50,0:50:99:0,120,1800 0/0:50,0:50:99:0,120,1800 0/0:49,0:49:99:0,114,1475 0/0:48,0:48:99:0,120,1800 0/0:48,0:48:99:0,120,1800 0/0:50,0:50:99:0,117,1126 0/0:48,0:48:99:0,120,1800 0/0:49,0:49:99:0,120,1800 0/0:50,0:50:99:0,116,1423 0/0:33,0:33:99:0,99,809 0/0:33,0:33:99:0,99,724 0/0:34,0:34:99:0,102,842 0/0:33,0:33:99:0,99,791 0/0:33,0:33:99:0,99,819 0/0:189,0:189:99:0,120,1800 0/0:49,0:49:99:0,120,1800 0/0:49,0:49:99:0,120,1800 0/0:49,0:49:99:0,117,1510 0/0:49,0:49:99:0,117,725 0/0:50,0:50:99:0,117,1394 0/0:45,0:45:99:0,112,1185 0/0:48,0:48:99:0,120,1800 0/0:46,0:46:99:0,120,1800 0/0:47,0:47:99:0,119,1239 0/0:47,0:47:99:0,115,1443 1/1:0,49:49:99:484,125,0 0/0:49,0:49:99:0,120,1800 1/1:0,50:50:99:476,127,0 0/1:27,23:50:80:80,0,614 0/0:49,0:49:99:0,119,1075 0/0:49,0:49:99:0,120,1800 0/0:48,0:48:99:0,120,1800 0/0:49,0:49:99:0,116,1495 0/0:49,0:49:99:0,120,1458 0/1:24,25:49:99:102,0,597 0/0:50,0:50:99:0,120,1800 0/0:49,0:49:99:0,120,1800 0/0:50,0:50:0:0,0,514 0/1:27,22:49:72:72,0,659 1/1:0,49:49:99:466,125,0 0/0:48,0:48:99:0,120,1800 0/0:48,0:48:99:0,120,1800 0/0:50,0:50:99:0,120,1800 0/0:50,0:50:99:0,120,1800 0/0:49,0:49:99:0,120,1800 0/0:49,0:49:99:0,117,1680 0/0:50,0:50:99:0,120,1800 0/0:50,0:50:99:0,120,1800 0/0:50,0:50:99:0,120,1800 0/0:49,0:49:99:0,120,1456 0/0:46,0:46:99:0,120,1800 0/0:50,0:50:99:0,120,1800 0/0:49,0:49:99:0,120,1800 0/1:27,22:49:73:73,0,619 0/1:28,21:49:63:63,0,597 0/0:47,0:47:99:0,120,1800 1/1:0,47:47:99:447,120,0 0/0:48,0:48:0:0,0,162 0/0:48,0:48:99:0,120,1800 0/0:48,0:48:99:0,120,1800 0/0:49,0:49:99:0,118,1450 0/0:47,0:47:99:0,109,1418 0/0:49,0:49:99:0,120,1800 NW_016690268.1 640307 . T C 28238.4 . AC=40;AF=0.025;AN=1608;BaseQRankSum=-1.882e+00;DP=36589;ExcessHet=-0.0000;FS=8.953;InbreedingCoeff=0.7361;MLEAC=40;MLEAF=0.025;MQ=60.00;MQRankSum=0.00;QD=20.63;ReadPosRankSum=0.00;SOR=0.025 GT:AD:DP:GQ:PL 0/0:49,0:49:99:0,111,1247 0/0:49,0:49:99:0,101,1139 0/0:15,0:15:45:0,45,454 0/0:48,0:48:99:0,120,1800 1/1:0,50:50:99:1334,150,0 0/0:50,0:50:99:0,120,1800 1/1:0,47:47:99:1240,141,0 1/1:0,50:50:99:1345,149,0 0/0:48,0:48:99:0,120,1800 0/0:50,0:50:99:0,120,1800 0/0:47,0:47:99:0,117,1652 0/0:50,0:50:99:0,117,1746 0/1:29,20:49:99:426,0,745 1/1:4,220:225:99:3764,556,0 0/0:107,0:107:99:0,120,1800 0/0:35,0:35:99:0,105,870 1/1:2,188:190:99:3244,482,0 0/0:33,0:33:99:0,99,777 0/0:33,0:33:99:0,99,771 1/1:0,49:49:99:1470,147,0 ./.:0,6:6:18:194,18,0 0/0:49,0:49:99:0,115,1128 0/0:52,0:52:99:0,120,1800 0/0:49,0:49:99:0,120,1800 0/0:49,0:49:99:0,120,1800 ./.:12,0:12:36:0,36,304 0/0:39,0:39:99:0,105,1040 0/0:22,0:22:66:0,66,562 0/0:50,0:50:99:0,120,1800 0/0:48,0:48:99:0,120,1800 0/0:50,0:50:99:0,120,1800 0/0:50,0:50:99:0,120,1800 0/0:49,0:49:99:0,120,1800 0/0:52,0:52:99:0,120,1800 0/0:53,0:53:99:0,120,1800 0/0:50,0:50:99:0,120,1800 0/0:51,0:51:99:0,120,1800 0/0:50,0:50:99:0,120,1800 0/0:87,0:87:99:0,120,1800 0/0:49,0:49:99:0,120,1800 0/0:51,0:51:99:0,120,1800 0/0:48,0:48:99:0,120,1800 0/0:51,0:51:99:0,120,1800 0/0:48,0:48:99:0,120,1800 0/0:49,0:49:99:0,120,1800 0/0:50,0:50:99:0,120,1800 0/0:49,0:49:99:0,120,1456 0/0:49,0:49:99:0,120,1800 0/0:48,0:48:99:0,120,1800 0/0:51,0:51:99:0,120,1800 ./.:12,0:12:36:0,36,333 ./.:13,0:13:39:0,39,374 0/0:17,0:17:51:0,51,472 0/0:30,0:30:90:0,90,835 0/0:49,0:49:99:0,120,1800 0/0:50,0:50:99:0,120,1800 0/0:49,0:49:99:0,116,1667 0/0:37,0:37:99:0,111,1017 0/0:53,0:53:99:0,120,1800 0/0:50,0:50:99:0,120,1800 0/0:51,0:51:99:0,120,1800 0/0:53,0:53:99:0,120,1800 0/0:48,0:48:99:0,120,1800 0/0:49,0:49:99:0,120,1800 0/0:50,0:50:99:0,120,1800 0/0:50,0:50:99:0,120,1800 0/0:49,0:49:99:0,115,1569 NW_016690268.1 1532871 . A G 2595.79 . AC=14;AF=8.750e-03;AN=1600;BaseQRankSum=-3.195e+00;DP=38142;ExcessHet=0.0000;FS=0.000;InbreedingCoeff=0.6816;MLEAC=15;MLEAF=9.375e-03;MQ=60.00;MQRankSum=0.00;QD=6.62;ReadPosRankSum=0.00;SOR=3.663 GT:AD:DP:GQ:PL 0/0:49,0:49:99:0,118,1412 0/0:46,0:46:99:0,115,1605 0/0:50,0:50:99:0,120,1800 0/0:49,0:49:99:0,119,1130 0/0:49,0:49:99:0,120,1800 0/0:49,0:49:99:0,120,1800 0/0:47,0:47:99:0,105,1377 0/0:50,0:50:99:0,120,1800 0/0:49,0:49:99:0,113,1432 0/0:48,0:48:99:0,120,1800 0/0:48,0:48:99:0,120,1800 0/0:49,0:49:99:0,111,1613 0/0:48,0:48:99:0,120,1800 0/0:44,0:44:99:0,102,1530 0/0:42,0:42:99:0,99,1485 0/0:42,0:42:99:0,120,1800 0/0:44,0:44:99:0,99,1201 0/0:50,0:50:99:0,120,1800 0/0:51,0:51:99:0,105,1575 0/0:48,0:48:99:0,117,1117 0/0:49,0:49:99:0,114,1529 0/0:48,0:48:99:0,111,1368 0/0:49,0:49:99:0,115,1362 0/0:48,0:48:99:0,120,1800 0/0:49,0:49:99:0,120,1800 0/0:49,0:49:99:0,120,1800 0/0:49,0:49:99:0,119,1292 0/0:50,0:50:99:0,120,1800 0/0:49,0:49:99:0,120,1800 0/0:49,0:49:99:0,115,1199 0/0:48,0:48:99:0,120,1230 0/0:48,0:48:99:0,119,1424 0/0:49,0:49:99:0,120,1280 0/0:49,0:49:99:0,120,1800 0/0:49,0:49:99:0,120,1800 0/0:49,0:49:99:0,120,1800 0/0:49,0:49:99:0,120,1800 0/0:48,0:48:99:0,120,1800 0/0:48,0:48:99:0,120,1800 0/0:49,0:49:99:0,120,1800 0/0:48,0:48:99:0,120,1800 0/1:30,20:50:50:50,0,788 1/1:1,49:50:96:434,96,0 0/1:22,28:50:99:129,0,488 0/0:32,0:32:95:0,95,663 0/0:42,0:42:99:0,111,1031 0/0:49,0:49:99:0,120,1800 0/0:49,0:49:99:0,117,1035 0/0:49,0:49:99:0,104,1326 0/0:49,0:49:99:0,120,1800 0/0:50,0:50:99:0,120,1800 0/0:49,0:49:99:0,120,1800 0/0:50,0:50:99:0,119,1474 0/0:49,0:49:99:0,117,1434 0/0:49,0:49:99:0,116,1687 0/0:49,0:49:99:0,120,1430 0/0:50,0:50:99:0,120,1800 0/0:49,0:49:99:0,119,1073 ./.:0,0:0:.:0,0,0 0/0:49,0:49:99:0,120,1800 0/0:43,0:43:99:0,108,1251 ./.:0,0:0:.:0,0,0 ./.:0,0:0:.:0,0,0 0/0:50,0:50:99:0,120,1800 0/0:50,0:50:99:0,120,1068 0/0:49,0:49:99:0,117,1516 0/0:49,0:49:99:0,117,1615 NW_016690268.1 1611392 . T A 2431.27 . AC=4;AF=2.457e-03;AN=1628;BaseQRankSum=5.66;DP=39836;ExcessHet=0.0080;FS=0.000;InbreedingCoeff=0.6256;MLEAC=4;MLEAF=2.457e-03;MQ=60.00;MQRankSum=0.00;QD=16.65;ReadPosRankSum=0.00;SOR=1.202 GT:AD:DP:GQ:PL 0/0:50,0:50:99:0,120,1800 0/0:52,0:52:99:0,120,1800 0/0:50,0:50:99:0,120,1800 0/0:48,0:48:99:0,117,1509 0/0:49,0:49:99:0,106,1444 0/0:52,0:52:99:0,120,1800 0/0:48,0:48:99:0,115,1398 0/0:49,0:49:99:0,119,1370 0/0:49,0:49:99:0,120,1800 0/0:49,0:49:99:0,120,1800 0/0:49,0:49:99:0,102,1399 0/0:49,0:49:99:0,119,1544 0/0:49,0:49:99:0,115,1518 0/0:38,0:38:90:0,90,1350 0/0:34,0:34:99:0,102,848 0/0:42,0:42:99:0,100,984 0/0:54,0:54:99:0,120,1800 0/0:34,0:34:99:0,102,839 0/0:56,0:56:99:0,99,1485 0/0:48,0:48:99:0,118,1448 0/0:49,0:49:99:0,120,1800 0/0:49,0:49:99:0,120,1800 0/0:47,0:47:99:0,120,1800 0/0:52,0:52:99:0,120,1800 0/0:55,0:55:99:0,120,1800 0/0:52,0:52:99:0,108,1099 0/0:51,0:51:99:0,100,1151 0/0:53,0:53:99:0,120,1800 0/0:52,0:52:99:0,105,1338 0/0:49,0:49:99:0,105,1280 0/0:50,0:50:99:0,120,1800 0/0:52,0:52:99:0,101,1349 0/0:50,0:50:99:0,118,1390 0/0:49,0:49:99:0,120,1800 0/0:50,0:50:99:0,120,1800 0/0:48,0:48:99:0,120,1800 0/0:49,0:49:99:0,120,1800 0/0:50,0:50:99:0,120,1800 0/0:50,0:50:99:0,119,1585 0/0:50,0:50:99:0,120,1800 0/0:50,0:50:99:0,114,1378 0/0:51,0:51:99:0,120,1800 0/0:48,0:48:99:0,120,1800 0/0:49,0:49:99:0,114,1278 ./.:2,0:2:6:0,6,41 0/0:49,0:49:99:0,118,1196 0/0:49,0:49:99:0,107,1250 0/0:51,0:51:99:0,120,1800 0/0:50,0:50:99:0,119,1352 0/0:50,0:50:99:0,117,1342 0/0:49,0:49:99:0,119,1705 0/0:49,0:49:99:0,117,1327 0/0:52,0:52:99:0,100,1390 0/0:51,0:51:99:0,120,1800 0/0:50,0:50:99:0,116,1520 0/0:50,0:50:99:0,120,1800 0/0:51,0:51:99:0,117,1296 1/1:0,50:50:99:1632,150,0 0/0:47,0:47:99:0,120,1800 0/1:27,20:47:99:480,0,685 0/1:31,18:50:99:417,0,794 0/0:47,0:47:99:0,120,1800 0/0:48,0:48:99:0,118,1394 0/0:51,0:51:99:0,120,1653 0/0:50,0:50:99:0,118,1421 0/0:52,0:52:99:0,117,1292 0/0:50,0:50:99:0,120,1800 NW_016690268.1 1735302 . T G 1275.48 . 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C T 75630.5 . 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C T 67604.4 . 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A G 2690.49 . 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T G 136328 . AC=224;AF=0.139;AN=1606;BaseQRankSum=-4.990e+00;DP=35495;ExcessHet=0.0000;FS=0.000;InbreedingCoeff=0.4160;MLEAC=238;MLEAF=0.148;MQ=60.00;MQRankSum=0.00;QD=17.29;ReadPosRankSum=0.00;SOR=1.254 GT:AD:DP:GQ:PL 0/0:49,0:49:99:0,120,1800 0/0:48,0:48:99:0,120,1800 0/0:37,0:37:99:0,111,1012 0/1:26,22:48:99:555,0,643 0/0:50,0:50:99:0,120,1800 0/1:33,15:48:99:297,0,869 0/0:49,0:49:99:0,119,1335 0/0:45,0:45:99:0,120,1800 0/0:49,0:49:99:0,120,1800 0/0:49,0:49:99:0,120,1323 0/1:25,24:49:99:615,0,669 0/0:49,0:49:99:0,119,1544 0/0:49,0:49:99:0,120,1800 0/0:82,0:82:99:0,120,1800 0/1:23,8:31:98:98,0,459 0/0:90,0:90:99:0,120,1800 0/0:71,0:71:99:0,120,1800 0/0:52,0:52:99:0,120,1800 0/0:133,0:133:99:0,120,1800 0/0:45,0:45:99:0,117,1230 0/0:47,0:47:99:0,120,1800 0/0:48,0:48:99:0,119,1416 ./.:1,0:1:3:0,3,28 0/0:48,0:48:99:0,120,1800 0/0:48,0:48:99:0,120,1800 0/0:48,0:48:99:0,120,1800 0/0:46,0:46:99:0,120,1800 0/0:47,0:47:99:0,120,1800 0/0:47,0:47:99:0,120,1800 0/0:45,0:45:99:0,117,1229 0/0:49,0:49:99:0,120,1800 0/0:44,0:44:99:0,120,1800 0/0:47,0:47:99:0,120,1800 0/0:47,0:47:99:0,120,1800 0/0:49,0:49:99:0,120,1800 0/0:47,0:47:99:0,120,1800 0/0:45,0:45:99:0,120,1800 0/0:46,0:46:99:0,120,1800 0/0:48,0:48:99:0,120,1800 0/0:47,0:47:99:0,120,1800 0/0:47,0:47:99:0,120,1800 0/0:48,0:48:99:0,120,1800 0/0:47,0:47:99:0,120,1800 0/0:49,0:49:99:0,120,1800 0/0:48,0:48:99:0,120,1800 0/0:48,0:48:99:0,120,1800 0/0:46,0:46:99:0,120,1800 0/0:46,0:46:99:0,120,1800 0/0:49,0:49:99:0,120,1800 0/0:48,0:48:99:0,120,1800 0/1:22,25:47:99:573,0,510 ./.:5,0:5:15:0,15,134 0/1:20,27:47:99:635,0,450 0/0:48,0:48:99:0,120,1800 0/0:47,0:47:99:0,120,1800 0/0:49,0:49:99:0,120,1800 0/1:26,21:48:99:446,0,633 0/0:46,0:46:99:0,120,1800 0/0:47,0:47:99:0,120,1800 0/0:48,0:48:99:0,120,1800 0/0:50,0:50:99:0,120,1800 0/0:50,0:50:99:0,120,1413 0/0:49,0:49:99:0,120,1800 0/0:49,0:49:99:0,120,1800 0/0:49,0:49:99:0,113,902 0/0:47,0:47:99:0,120,1800 0/1:34,15:49:99:266,0,812 NW_016690332.1 2699659 . G A 102233 . 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G T 4514.49 . AC=12;AF=7.371e-03;AN=1628;BaseQRankSum=4.20;DP=32699;ExcessHet=0.0000;FS=69.389;InbreedingCoeff=0.6087;MLEAC=11;MLEAF=6.757e-03;MQ=60.00;MQRankSum=0.00;QD=18.13;ReadPosRankSum=0.055;SOR=3.547 GT:AD:DP:GQ:PL 0/0:48,0:48:99:0,101,1165 0/0:48,0:48:99:0,120,1800 ./.:10,0:10:30:0,30,271 0/0:45,0:45:99:0,105,1261 0/0:88,0:88:99:0,120,1800 0/0:50,0:50:99:0,111,748 0/0:44,0:44:99:0,120,1800 0/0:49,0:49:99:0,99,1065 0/0:45,0:45:99:0,114,1148 0/0:52,0:52:99:0,120,1800 0/0:49,0:49:99:0,118,1235 0/0:47,0:47:99:0,102,1147 0/0:53,0:53:99:0,120,1800 0/0:22,0:22:45:0,45,495 0/0:34,0:34:99:0,99,736 0/0:40,0:40:99:0,111,1665 0/0:50,0:50:99:0,120,1800 0/0:20,0:20:54:0,54,810 0/1:46,46:92:99:794,0,816 0/0:40,0:40:99:0,99,1125 ./.:3,0:3:9:0,9,54 0/0:48,0:48:99:0,109,958 0/0:53,0:53:99:0,120,1309 0/0:49,0:49:99:0,116,1279 1/1:0,46:46:99:1257,137,0 ./.:0,9:9:27:250,27,0 0/1:10,9:19:99:194,0,180 0/0:27,0:27:80:0,80,612 0/0:47,0:47:99:0,102,1226 0/0:48,0:48:99:0,112,1169 0/0:50,0:50:99:0,111,1089 0/0:48,0:48:99:0,119,1289 0/0:48,0:48:99:0,107,767 0/0:51,0:51:99:0,120,1800 0/0:44,0:44:99:0,102,767 0/0:52,0:52:99:0,118,1386 0/0:39,0:39:99:0,114,656 0/0:49,0:49:99:0,120,1800 0/0:46,0:46:99:0,103,1214 0/0:51,0:51:99:0,120,1800 0/0:45,0:45:99:0,107,1181 0/0:46,0:46:99:0,108,732 0/0:50,0:50:99:0,107,1182 0/0:47,0:47:99:0,110,689 0/0:45,0:45:99:0,108,1142 0/0:47,0:47:99:0,104,977 0/0:46,0:46:99:0,104,1171 0/0:46,0:46:99:0,114,1237 0/0:46,0:46:99:0,117,960 0/0:51,0:51:99:0,119,1484 ./.:12,0:12:36:0,36,296 ./.:10,0:10:30:0,30,238 0/0:24,0:24:72:0,72,541 0/0:48,0:48:99:0,106,802 0/0:48,0:48:99:0,120,1800 0/0:50,0:50:99:0,102,1394 0/0:53,0:53:99:0,116,1486 0/0:39,0:39:99:0,104,598 0/0:45,0:45:99:0,113,654 0/0:50,0:50:99:0,108,1345 0/0:47,0:47:99:0,99,1168 0/0:48,0:48:99:0,112,1287 0/0:46,0:46:99:0,120,1278 0/0:45,0:45:99:0,103,1081 0/0:44,0:44:99:0,113,1351 0/0:51,0:51:99:0,114,1682 0/0:47,0:47:99:0,103,1263 NW_016690316.1 2137795 . A G 9442.92 . 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NW_016690316.1 2336044 . C T 78296.6 . 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C T 11080.4 . 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C T 221528 . 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NW_016690357.1 377310 . C T 12652.6 . AC=17;AF=0.010;AN=1630;BaseQRankSum=2.39;DP=40116;ExcessHet=-0.0000;FS=57.242;InbreedingCoeff=0.7296;MLEAC=18;MLEAF=0.011;MQ=60.00;MQRankSum=0.00;QD=23.74;ReadPosRankSum=0.00;SOR=4.818 GT:AD:DP:GQ:PL 0/0:48,0:48:99:0,120,1800 0/0:49,0:49:99:0,120,1800 0/0:51,0:51:99:0,120,1800 0/0:48,0:48:99:0,120,1800 0/0:51,0:51:99:0,120,1800 0/0:51,0:51:99:0,120,1800 0/0:49,0:49:99:0,118,1349 0/0:51,0:51:99:0,120,1800 0/0:52,0:52:99:0,120,1800 0/0:49,0:49:99:0,120,1800 0/0:48,0:48:99:0,120,1800 0/0:50,0:50:99:0,109,1541 0/0:51,0:51:99:0,120,1800 0/0:37,0:37:99:0,111,911 0/0:33,0:33:99:0,99,793 0/0:47,0:47:99:0,120,1800 0/0:83,0:83:99:0,120,1800 0/0:34,0:34:99:0,102,836 0/1:80,65:145:99:2122,0,2853 0/0:48,0:48:99:0,120,1800 0/0:50,0:50:99:0,120,1800 0/0:50,0:50:99:0,116,1481 0/0:55,0:55:99:0,120,1800 0/0:50,0:50:99:0,120,1800 ./.:1,0:1:3:0,3,22 1/1:1,49:50:99:1405,125,0 ./.:0,0:0:.:0,0,0 1/1:0,50:50:99:1438,150,0 1/1:1,50:51:99:1412,129,0 0/0:52,0:52:99:0,120,1800 1/1:0,47:47:99:1392,141,0 0/0:52,0:52:99:0,120,1800 0/0:49,0:49:99:0,120,1800 0/0:49,0:49:99:0,120,1800 0/0:49,0:49:99:0,120,1800 0/0:52,0:52:99:0,120,1800 0/0:49,0:49:99:0,120,1800 0/0:50,0:50:99:0,116,1334 0/0:50,0:50:99:0,120,1800 0/0:50,0:50:99:0,120,1800 0/0:51,0:51:99:0,120,1800 0/0:57,0:57:99:0,120,1800 0/0:52,0:52:99:0,117,1427 0/0:51,0:51:99:0,118,1352 0/0:49,0:49:99:0,120,1800 0/0:49,0:49:99:0,113,1166 0/0:49,0:49:99:0,120,1603 0/0:51,0:51:99:0,108,1516 0/0:49,0:49:99:0,120,1800 0/0:49,0:49:99:0,117,1515 0/0:53,0:53:99:0,120,1800 0/0:49,0:49:99:0,115,1541 0/0:59,0:59:99:0,120,1800 0/0:54,0:54:99:0,120,1800 0/0:47,0:47:99:0,104,1463 0/0:54,0:54:99:0,120,1800 0/0:54,0:54:99:0,120,1800 0/0:50,0:50:99:0,120,1800 0/0:49,0:49:99:0,113,1519 0/0:54,0:54:99:0,120,1800 0/0:53,0:53:99:0,120,1800 0/0:52,0:52:99:0,120,1800 0/0:54,0:54:99:0,120,1800 0/0:49,0:49:99:0,119,1555 0/0:51,0:51:99:0,120,1800 0/0:48,0:48:99:0,108,1507 0/0:49,0:49:99:0,116,1694 NW_016690357.1 579370 . G A 48765.5 . AC=45;AF=0.029;AN=1558;BaseQRankSum=1.01;DP=39737;ExcessHet=0.0000;FS=12.545;InbreedingCoeff=0.4395;MLEAC=53;MLEAF=0.034;MQ=60.00;MQRankSum=0.00;QD=23.08;ReadPosRankSum=0.00;SOR=1.475 GT:AD:DP:GQ:PGT:PID:PL:PS ./.:50,0:50:.:.:.:0,0,0:. 0/0:45,0:45:99:.:.:0,118,1273:. 0/0:50,0:50:99:.:.:0,120,1800:. 0/0:47,0:47:99:.:.:0,120,1800:. 0/0:48,0:48:99:.:.:0,118,992:. 0/0:50,0:50:0:.:.:0,0,667:. 0/0:49,0:49:99:.:.:0,120,1800:. 0/0:48,0:48:99:.:.:0,120,1800:. 0/0:50,0:50:99:.:.:0,120,1800:. 0/0:50,0:50:99:.:.:0,120,1574:. 0/0:50,0:50:99:.:.:0,120,1800:. 0/0:51,0:51:0:.:.:0,0,447:. 0/0:49,0:49:99:.:.:0,116,1529:. 0/0:47,0:47:99:.:.:0,102,1530:. 0|1:57,49:106:99:0|1:579352_G_A:1864,0,2226:579352 0|1:114,82:196:99:0|1:579352_G_A:3060,0,4470:579352 0/0:43,0:43:99:.:.:0,99,735:. 0|1:51,55:107:99:0|1:579367_A_T:2071,0,1903:579367 0|1:123,108:232:99:0|1:579319_C_T:4088,0,4022:579319 0/0:49,0:49:99:.:.:0,120,1800:. 0/0:50,0:50:99:.:.:0,119,1525:. 0/0:50,0:50:99:.:.:0,120,1800:. 0/0:49,0:49:99:.:.:0,108,1437:. 0/0:31,0:31:59:.:.:0,59,934:. 0/0:50,0:50:99:.:.:0,120,1800:. 0/0:50,0:50:99:.:.:0,120,1800:. 0/0:48,0:48:99:.:.:0,120,1800:. 0/0:50,0:50:99:.:.:0,120,1800:. 0/0:49,0:49:99:.:.:0,120,1800:. 0/0:51,0:51:99:.:.:0,120,1800:. 0/0:50,0:50:99:.:.:0,120,1800:. 0/0:49,0:49:99:.:.:0,120,1800:. 0/0:47,0:47:99:.:.:0,120,1800:. 0/0:50,0:50:99:.:.:0,120,1800:. 0/0:49,0:49:99:.:.:0,120,1800:. 0/0:46,0:46:99:.:.:0,112,1286:. 0/0:49,0:49:99:.:.:0,120,1800:. 0/0:51,0:51:99:.:.:0,120,1800:. 0/0:65,0:65:99:.:.:0,120,1800:. 0/0:48,0:48:99:.:.:0,119,1302:. 0/0:50,0:50:99:.:.:0,119,1234:. 0/0:49,0:49:99:.:.:0,120,1800:. 0/0:32,0:32:96:.:.:0,96,812:. 0/0:50,0:50:99:.:.:0,120,1800:. 1|1:1,48:49:99:1|1:579367_A_T:2115,102,0:579367 1|1:1,49:50:99:1|1:579367_A_T:2121,105,0:579367 0/0:52,0:52:0:.:.:0,0,1090:. 0/0:56,0:56:99:.:.:0,120,1800:. ./.:51,0:51:.:.:.:0,0,0:. 0/0:44,0:44:69:.:.:0,69,1210:. 0/0:63,0:63:99:.:.:0,120,1800:. 0/0:21,0:21:63:.:.:0,63,591:. 0/0:50,0:50:99:.:.:0,120,1800:. 0/0:41,0:41:99:.:.:0,120,1800:. 0/0:56,0:56:99:.:.:0,120,1800:. 0/0:51,0:51:99:.:.:0,120,1800:. 0/0:48,0:48:99:.:.:0,120,1800:. 0/0:51,0:51:99:.:.:0,120,1800:. 0/0:48,0:48:99:.:.:0,119,1482:. 0/0:52,0:52:99:.:.:0,120,1800:. 0/0:50,0:50:99:.:.:0,120,1800:. 0/0:51,0:51:99:.:.:0,120,1800:. 0/0:54,0:54:99:.:.:0,120,1800:. 0/0:51,0:51:0:.:.:0,0,502:. 0/0:50,0:50:99:.:.:0,120,1800:. 0/0:99,0:99:0:.:.:0,0,1018:. 0/0:52,0:52:99:.:.:0,120,1800:. NW_016690357.1 895106 . C T 40810.8 . AC=84;AF=0.052;AN=1624;BaseQRankSum=6.55;DP=39066;ExcessHet=0.0003;FS=0.000;InbreedingCoeff=0.2818;MLEAC=86;MLEAF=0.053;MQ=60.00;MQRankSum=0.00;QD=11.69;ReadPosRankSum=0.00;SOR=0.281 GT:AD:DP:GQ:PL 0/0:47,0:47:99:0,116,1461 0/0:48,0:48:99:0,120,1800 ./.:0,4:4:12:143,12,0 0/0:50,0:50:99:0,119,1574 0/0:50,0:50:99:0,111,1431 0/0:47,0:47:99:0,120,1800 0/1:33,16:49:99:362,0,731 0/0:48,0:48:99:0,120,1800 0/0:50,0:50:99:0,120,1800 0/0:45,0:45:99:0,120,1800 0/0:49,0:49:99:0,120,1800 0/0:48,0:48:99:0,117,1566 0/0:50,0:50:99:0,120,1800 0/0:42,0:42:99:0,102,1530 0/0:50,0:50:99:0,120,1800 0/0:34,0:34:99:0,102,832 0/0:41,0:41:99:0,99,1485 0/0:44,0:44:99:0,109,1200 0/0:111,0:111:99:0,120,1800 0/0:50,0:50:99:0,119,1426 0/0:49,0:49:99:0,120,1800 0/0:50,0:50:99:0,120,1800 0/0:49,0:49:99:0,120,1800 0/0:50,0:50:99:0,120,1800 0/0:50,0:50:99:0,120,1800 0/0:50,0:50:99:0,120,1800 0/0:50,0:50:99:0,120,1800 0/0:50,0:50:99:0,120,1800 0/0:50,0:50:99:0,120,1800 0/0:49,0:49:99:0,119,1329 0/0:49,0:49:99:0,120,1800 0/0:47,0:47:99:0,120,1800 0/0:50,0:50:99:0,116,723 0/0:49,0:49:99:0,120,1800 1/1:0,48:48:99:1461,144,0 0/1:30,20:50:99:443,0,617 0/0:48,0:48:99:0,115,1354 0/1:32,18:50:99:413,0,748 0/0:49,0:49:99:0,120,1800 0/0:49,0:49:99:0,120,1800 0/0:50,0:50:99:0,120,1800 0/0:50,0:50:99:0,120,1800 0/0:50,0:50:99:0,120,1800 0/0:49,0:49:99:0,120,1800 0/0:50,0:50:99:0,120,1800 0/0:49,0:49:99:0,120,1800 0/0:50,0:50:99:0,120,1800 0/0:50,0:50:99:0,120,1800 0/0:49,0:49:99:0,120,1800 0/0:49,0:49:99:0,115,868 0/0:51,0:51:99:0,117,891 0/0:44,0:44:99:0,120,1800 0/0:48,0:48:99:0,116,1462 0/0:49,0:49:99:0,118,1174 0/0:50,0:50:99:0,120,1800 0/0:49,0:49:99:0,116,1446 0/1:43,6:49:55:55,0,1170 0/0:50,0:50:99:0,120,1800 0/0:49,0:49:99:0,120,1353 0/0:48,0:48:99:0,120,1800 0/0:50,0:50:99:0,120,1800 0/0:49,0:49:99:0,120,1800 0/0:50,0:50:99:0,115,1344 0/0:49,0:49:99:0,120,1800 0/0:49,0:49:99:0,120,1800 0/0:50,0:50:99:0,120,1800 0/0:49,0:49:99:0,119,1214 NW_016690357.1 1032748 . C T 1855.01 . 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C T 16530.9 . 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C T 50541.5 . 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NW_016690411.1 470844 . A G 19938.7 . 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C T 37392.1 . 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