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##contig= ##contig= ##contig= ##contig= ##contig= ##contig= ##contig= ##contig= ##contig= ##contig= ##contig= ##contig= ##contig= ##contig= ##contig= ##contig= ##contig= ##contig= ##contig= ##contig= ##contig= ##contig= ##contig= ##contig= ##contig= ##contig= ##contig= ##contig= ##contig= ##contig= ##contig= ##contig= ##contig= ##contig= ##contig= ##contig= ##contig= ##contig= ##contig= ##contig= ##contig= ##contig= ##contig= ##contig= ##contig= ##contig= ##contig= ##contig= ##contig= ##contig= ##contig= ##contig= ##contig= ##contig= ##contig= ##contig= ##contig= ##contig= ##contig= ##contig= ##contig= ##contig= ##contig= ##contig= ##contig= ##contig= ##contig= ##contig= ##contig= ##contig= ##contig= ##contig= ##contig= ##contig= ##contig= ##contig= ##contig= ##contig= ##contig= ##contig= ##contig= ##contig= ##contig= ##contig= ##contig= ##contig= ##contig= ##contig= ##contig= ##contig= ##contig= ##contig= ##contig= ##contig= ##contig= ##contig= ##contig= ##contig= ##contig= ##contig= ##contig= ##contig= ##contig= ##contig= ##contig= ##contig= ##contig= ##contig= ##contig= ##contig= ##contig= ##contig= ##contig= ##contig= ##contig= ##contig= ##contig= ##contig= ##contig= ##contig= ##contig= ##contig= ##contig= ##contig= ##contig= ##contig= ##contig= ##contig= ##contig= ##contig= ##contig= ##contig= ##contig= ##contig= ##contig= ##contig= ##contig= ##contig= ##contig= ##contig= ##contig= ##contig= ##contig= ##contig= ##contig= ##contig= ##contig= ##source=GenomicsDBImport ##source=GenotypeGVCFs ##source=HaplotypeCaller #CHROM POS ID REF ALT QUAL FILTER INFO FORMAT Sample613 Sample617 Sample618 Sample639 Sample643 Sample644 Sample645 Sample921 Sample922 Sample923 Sample924 Sample925 Sample926 NW_016690180.1 1409742 . C T 114869 . AC=129;AF=0.079;AN=1634;BaseQRankSum=5.35;DP=37947;ExcessHet=0.0000;FS=0.000;InbreedingCoeff=0.3967;MLEAC=132;MLEAF=0.081;MQ=59.99;MQRankSum=0.00;QD=22.55;ReadPosRankSum=0.00;SOR=0.988 GT:AD:DP:GQ:PGT:PID:PL:PS 1|1:0,50:50:99:1|1:1409739_C_T:2250,151,0:1409739 1|1:0,46:46:99:1|1:1409739_C_T:2055,138,0:1409739 1|1:0,51:51:99:1|1:1409739_C_T:2270,154,0:1409739 0|1:26,21:47:99:0|1:1409739_C_T:785,0,1016:1409739 1|1:0,48:48:99:1|1:1409739_C_T:2125,144,0:1409739 1|1:0,51:51:99:1|1:1409739_C_T:2285,154,0:1409739 1|1:0,51:51:99:1|1:1409739_C_T:2295,154,0:1409739 0/0:46,0:46:99:.:.:0,100,1134:. 1|1:0,48:48:99:1|1:1409739_C_T:2160,144,0:1409739 1|1:0,47:47:99:1|1:1409739_C_T:2050,141,0:1409739 1|1:0,49:49:99:1|1:1409739_C_T:2190,147,0:1409739 1|1:0,60:60:99:1|1:1409739_C_T:2675,181,0:1409739 1|1:0,49:49:99:1|1:1409739_C_T:2205,147,0:1409739 NW_016690180.1 2625750 . G A 17276.2 . AC=27;AF=0.017;AN=1624;BaseQRankSum=6.68;DP=39139;ExcessHet=0.0021;FS=0.000;InbreedingCoeff=0.4291;MLEAC=28;MLEAF=0.017;MQ=60.00;MQRankSum=0.00;QD=12.98;ReadPosRankSum=0.00;SOR=0.813 GT:AD:DP:GQ:PGT:PID:PL:PS 0/1:28,20:48:99:.:.:460,0,135:. 0/0:49,0:49:99:.:.:0,120,1800:. 0/0:48,0:48:99:.:.:0,118,1257:. 0/0:48,0:48:99:.:.:0,120,1800:. 0/0:49,0:49:99:.:.:0,120,1236:. 0/1:28,19:47:99:.:.:396,0,138:. 0/0:49,0:49:99:.:.:0,115,1285:. 0/0:50,0:50:99:.:.:0,120,1800:. 0/1:21,27:48:65:.:.:640,0,65:. 0/0:48,0:48:99:.:.:0,99,1436:. 0/1:28,21:49:99:.:.:469,0,132:. 1/1:0,49:49:99:.:.:1385,147,0:. 0/0:49,0:49:99:.:.:0,120,1800:. NW_016690180.1 4475580 . T C 158587 . AC=226;AF=0.138;AN=1634;BaseQRankSum=-5.879e+00;DP=39038;ExcessHet=-0.0000;FS=0.000;InbreedingCoeff=0.5704;MLEAC=234;MLEAF=0.143;MQ=59.99;MQRankSum=0.00;QD=20.85;ReadPosRankSum=0.00;SOR=0.606 GT:AD:DP:GQ:PGT:PID:PL:PS 0/1:29,23:52:99:.:.:113,0,547:. 0/1:24,27:51:99:.:.:116,0,485:. 1|1:0,43:43:99:1|1:4475580_T_C:1935,129,0:4475580 1/1:0,52:52:99:.:.:589,136,0:. 1/1:0,52:52:99:.:.:549,134,0:. 1|1:0,50:50:99:1|1:4475580_T_C:2250,151,0:4475580 1/1:0,49:49:99:.:.:519,127,0:. 1|1:0,49:49:99:1|1:4475580_T_C:2205,147,0:4475580 1/1:0,51:51:99:.:.:485,130,0:. 1|1:0,47:47:99:1|1:4475580_T_C:2094,141,0:4475580 1|1:0,54:54:99:1|1:4475580_T_C:2359,162,0:4475580 1/1:0,57:57:99:.:.:1264,169,0:. 0/0:49,0:49:99:.:.:0,117,1323:. NW_016690180.1 6286005 . T C 2236.38 . AC=20;AF=0.012;AN=1624;BaseQRankSum=-6.396e+00;DP=36163;ExcessHet=0.0003;FS=0.000;InbreedingCoeff=0.4986;MLEAC=21;MLEAF=0.013;MQ=60.00;MQRankSum=0.00;QD=2.70;ReadPosRankSum=0.00;SOR=0.998 GT:AD:DP:GQ:PGT:PID:PL:PS 0|1:23,28:51:99:0|1:6286005_T_C:126,0,868:6286005 0|1:27,22:49:72:0|1:6286005_T_C:72,0,1078:6286005 0/1:20,28:48:99:.:.:135,0,438:. 0/1:23,23:46:92:.:.:92,0,492:. 0/1:24,25:49:99:.:.:102,0,535:. 0/1:27,22:49:73:.:.:73,0,598:. 0/0:49,0:49:99:.:.:0,120,1429:. 0/1:29,19:48:45:.:.:45,0,718:. 0/1:28,20:48:56:.:.:56,0,700:. 1/1:0,48:48:99:.:.:457,122,0:. 1/1:0,51:51:99:.:.:485,130,0:. 0/1:25,22:47:79:.:.:79,0,575:. 0/1:26,25:51:96:.:.:96,0,627:. NW_016690180.1 8585650 . T C 161115 . AC=218;AF=0.134;AN=1630;BaseQRankSum=-1.345e+00;DP=43457;ExcessHet=0.0000;FS=0.000;InbreedingCoeff=0.2942;MLEAC=225;MLEAF=0.138;MQ=60.00;MQRankSum=0.00;QD=16.52;ReadPosRankSum=0.00;SOR=0.798 GT:AD:DP:GQ:PGT:PID:PL:PS 0/0:54,0:54:99:.:.:0,120,1800:. 0/0:52,0:52:99:.:.:0,111,1348:. 0/0:51,0:51:99:.:.:0,120,1800:. 0/0:53,0:53:99:.:.:0,120,1800:. 0/1:37,17:54:99:.:.:290,0,849:. 0/0:54,0:54:99:.:.:0,115,1630:. 0/0:52,0:52:99:.:.:0,120,1800:. 0/0:52,0:52:99:.:.:0,120,1800:. 0/0:52,0:52:99:.:.:0,120,1800:. 0/1:30,23:53:99:.:.:474,0,701:. 0/0:50,0:50:99:.:.:0,120,1800:. 1/1:0,53:53:99:.:.:1414,159,0:. 0/1:31,25:56:99:.:.:494,0,689:. NW_016690180.1 9323416 . G A 167352 . AC=152;AF=0.094;AN=1620;BaseQRankSum=5.45;DP=40184;ExcessHet=-0.0000;FS=8.684;InbreedingCoeff=0.6790;MLEAC=159;MLEAF=0.098;MQ=59.99;MQRankSum=0.00;QD=33.07;ReadPosRankSum=0.00;SOR=3.646 GT:AD:DP:GQ:PGT:PID:PL:PS 1|1:1,50:51:99:1|1:9323415_T_C:2231,134,0:9323415 1|1:0,50:50:99:1|1:9323415_T_C:2250,151,0:9323415 1|1:0,51:51:99:1|1:9323415_T_C:2294,154,0:9323415 1|1:0,50:50:99:1|1:9323415_T_C:2250,151,0:9323415 0/1:27,25:52:99:.:.:654,0,634:. 0|1:30,20:50:99:0|1:9323416_G_A:749,0,1199:9323416 0|1:28,21:49:99:0|1:9323416_G_A:793,0,1113:9323416 1|1:0,51:51:99:1|1:9323415_T_C:2295,154,0:9323415 1|1:1,48:49:99:1|1:9323415_T_C:2099,102,0:9323415 1|1:0,51:51:99:1|1:9323415_T_C:2286,154,0:9323415 1|1:0,54:54:99:1|1:9323415_T_C:2424,163,0:9323415 1|1:0,50:50:99:1|1:9323415_T_C:2250,151,0:9323415 1|1:0,49:49:99:1|1:9323415_T_C:2185,147,0:9323415 NW_016690180.1 9473547 . G A 2936.62 . AC=5;AF=3.561e-03;AN=1404;BaseQRankSum=3.26;DP=34010;ExcessHet=0.0155;FS=0.000;InbreedingCoeff=0.5920;MLEAC=6;MLEAF=4.274e-03;MQ=60.00;MQRankSum=0.00;QD=15.62;ReadPosRankSum=0.00;SOR=0.736 GT:AD:DP:GQ:PGT:PID:PL:PS 0/0:49,0:49:99:.:.:0,109,1367:. 0/0:49,0:49:99:.:.:0,120,1800:. 0/0:46,0:46:99:.:.:0,120,1401:. 0/0:47,0:47:99:.:.:0,120,1800:. 0/0:49,0:49:99:.:.:0,101,1302:. 0/0:47,0:47:99:.:.:0,111,1267:. 0/0:50,0:50:99:.:.:0,120,1800:. 0/0:44,0:44:99:.:.:0,115,1203:. 0/1:30,14:44:99:.:.:267,0,662:. 0/0:44,0:44:81:.:.:0,81,1215:. 0/0:48,0:48:99:.:.:0,120,1800:. 0/1:35,15:50:99:.:.:276,0,880:. 0/1:27,20:47:99:.:.:424,0,597:. NW_016690180.1 11634607 . A C 1329.4 . AC=3;AF=1.836e-03;AN=1634;BaseQRankSum=-5.613e+00;DP=38967;ExcessHet=3.0183;FS=0.000;InbreedingCoeff=0.5693;MLEAC=3;MLEAF=1.836e-03;MQ=60.00;MQRankSum=0.00;QD=8.92;ReadPosRankSum=-5.780e-01;SOR=0.895 GT:AD:DP:GQ:PL 0/0:51,0:51:99:0,117,1312 0/0:49,0:49:99:0,117,1244 0/0:51,0:51:99:0,111,1159 0/0:49,0:49:99:0,120,1800 0/0:48,0:48:99:0,100,1296 0/0:48,0:48:99:0,103,1470 0/0:50,0:50:99:0,120,1800 0/0:48,0:48:99:0,101,1086 0/1:25,27:52:99:473,0,583 0/0:50,0:50:99:0,114,1710 0/0:48,0:48:99:0,102,1340 0/1:25,24:49:99:391,0,594 0/1:18,30:49:99:538,0,356 NW_016690180.1 13464049 . T C 11177.9 . 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AC=8;AF=4.994e-03;AN=1602;BaseQRankSum=-6.432e+00;DP=40954;ExcessHet=0.0381;FS=3.163;InbreedingCoeff=0.5468;MLEAC=8;MLEAF=4.994e-03;MQ=60.00;MQRankSum=0.00;QD=7.75;ReadPosRankSum=0.00;SOR=0.452 GT:AD:DP:GQ:PL 0/0:54,0:54:37:0,37,1284 0/0:49,0:49:99:0,101,1393 0/0:52,0:52:99:0,120,1800 0/0:52,0:52:99:0,99,1085 0/0:53,0:53:99:0,105,1209 0/1:29,19:48:99:293,0,683 0/0:50,0:50:99:0,120,1800 0/1:29,20:49:99:327,0,657 0/0:51,0:51:99:0,101,1236 0/1:28,23:51:99:395,0,648 0/0:50,0:50:99:0,120,1800 0/0:58,0:58:99:0,99,1430 0/1:33,20:53:99:334,0,767 NW_016690180.1 18503918 . T C 10913.1 . 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AC=152;AF=0.093;AN=1634;BaseQRankSum=-6.159e+00;DP=39653;ExcessHet=0.0000;FS=0.000;InbreedingCoeff=0.3757;MLEAC=157;MLEAF=0.096;MQ=60.00;MQRankSum=0.00;QD=15.58;ReadPosRankSum=0.00;SOR=0.943 GT:AD:DP:GQ:PL 0/0:52,0:52:99:0,120,1800 0/0:50,0:50:99:0,120,1610 0/1:18,26:44:99:638,0,427 0/1:21,26:47:99:572,0,501 1/1:0,49:49:99:1375,147,0 1/1:0,48:48:99:1288,143,0 0/1:26,22:48:99:488,0,660 1/1:1,47:48:99:1272,112,0 1/1:0,52:52:99:1447,156,0 0/1:23,27:50:99:599,0,558 1/1:0,52:52:99:1468,156,0 1/1:0,51:51:99:1386,152,0 1/1:0,48:48:99:1363,144,0 NW_016690181.1 7296522 . C T 24730.4 . AC=35;AF=0.022;AN=1618;BaseQRankSum=5.59;DP=39306;ExcessHet=-0.0000;FS=0.000;InbreedingCoeff=0.7770;MLEAC=36;MLEAF=0.022;MQ=60.00;MQRankSum=0.00;QD=26.39;ReadPosRankSum=0.00;SOR=3.586 GT:AD:DP:GQ:PGT:PID:PL:PS 1/1:0,49:49:99:.:.:1501,147,0:. 0/0:48,0:48:99:.:.:0,120,1800:. 0/1:18,31:49:99:.:.:801,0,349:. 1/1:0,49:49:99:.:.:1450,147,0:. 1/1:2,48:50:60:.:.:1284,60,0:. 1/1:0,50:50:99:.:.:1521,150,0:. 1/1:3,47:50:33:.:.:1310,33,0:. 1/1:0,50:50:99:.:.:1486,149,0:. 1/1:0,50:50:99:.:.:1487,150,0:. 1/1:0,49:49:99:.:.:1409,147,0:. 1/1:0,49:49:99:.:.:1408,147,0:. 1/1:0,48:48:99:.:.:1468,144,0:. 1/1:0,49:49:99:.:.:1409,147,0:. NW_016690181.1 8217897 . A G 29952.3 . 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AC=46;AF=0.029;AN=1608;BaseQRankSum=6.02;DP=38321;ExcessHet=0.0006;FS=31.560;InbreedingCoeff=0.3791;MLEAC=48;MLEAF=0.030;MQ=60.00;MQRankSum=0.00;QD=20.54;ReadPosRankSum=0.00;SOR=8.171 GT:AD:DP:GQ:PGT:PID:PL:PS 0|1:24,24:48:99:0|1:8650348_G_A:827,0,899:8650348 0|1:25,20:45:99:0|1:8650348_G_A:677,0,956:8650348 1|1:0,48:48:99:1|1:8650348_G_A:2146,144,0:8650348 0/0:42,0:42:99:.:.:0,120,1800:. 0/0:47,0:47:99:.:.:0,120,1800:. 0|1:24,21:45:99:0|1:8650348_G_A:726,0,910:8650348 0|1:21,26:47:99:0|1:8650348_G_A:1013,0,797:8650348 0/0:47,0:47:99:.:.:0,120,1800:. 0/0:44,0:44:99:.:.:0,120,1800:. 0|1:24,26:50:99:0|1:8650348_G_A:910,0,915:8650348 1|1:1,46:47:96:1|1:8650348_G_A:1905,96,0:8650348 0/0:45,0:45:99:.:.:0,120,1307:. 0/0:47,0:47:99:.:.:0,117,1437:. NW_016690181.1 9687660 . C T 4030.51 . AC=6;AF=3.695e-03;AN=1624;BaseQRankSum=6.41;DP=39653;ExcessHet=0.0201;FS=0.000;InbreedingCoeff=0.5315;MLEAC=6;MLEAF=3.695e-03;MQ=60.00;MQRankSum=0.00;QD=16.45;ReadPosRankSum=0.00;SOR=1.016 GT:AD:DP:GQ:PGT:PID:PL:PS 0/0:49,0:49:99:.:.:0,120,1800:. 0/0:47,0:47:99:.:.:0,118,1270:. 0/0:50,0:50:99:.:.:0,120,1800:. 0/1:24,25:50:99:.:.:546,0,423:. 0/0:49,0:49:99:.:.:0,119,1351:. 0/0:49,0:49:99:.:.:0,120,1800:. 0/0:49,0:49:99:.:.:0,120,1346:. 0/0:49,0:49:99:.:.:0,120,1271:. 0/0:48,0:48:99:.:.:0,120,1800:. 0/1:22,27:50:99:.:.:623,0,375:. 0/0:49,0:49:99:.:.:0,120,1800:. 0/0:50,0:50:99:.:.:0,120,1800:. 0/1:32,17:49:99:.:.:302,0,623:. NW_016690181.1 11409818 . C T 2480.3 . AC=4;AF=2.451e-03;AN=1632;BaseQRankSum=6.66;DP=39098;ExcessHet=3.0263;FS=0.000;InbreedingCoeff=0.5347;MLEAC=4;MLEAF=2.451e-03;MQ=60.00;MQRankSum=0.00;QD=12.46;ReadPosRankSum=0.00;SOR=0.744 GT:AD:DP:GQ:PL 0/0:48,0:48:99:0,111,1390 0/0:48,0:48:99:0,120,1800 0/0:48,0:48:99:0,99,1470 0/0:49,0:49:99:0,120,1800 0/1:28,22:50:99:568,0,709 0/0:46,0:46:99:0,99,1229 0/0:48,0:48:99:0,120,1317 0/0:50,0:50:99:0,120,1800 0/0:48,0:48:99:0,120,1800 0/1:21,29:50:99:739,0,430 0/1:28,22:50:99:522,0,622 0/0:50,0:50:99:0,120,1800 0/1:20,29:49:99:743,0,406 NW_016690181.1 12131600 . T C 3438.34 . AC=7;AF=4.274e-03;AN=1638;BaseQRankSum=-5.464e+00;DP=39038;ExcessHet=0.0279;FS=3.670;InbreedingCoeff=0.5285;MLEAC=7;MLEAF=4.274e-03;MQ=60.00;MQRankSum=0.00;QD=11.54;ReadPosRankSum=0.172;SOR=2.097 GT:AD:DP:GQ:PL 0/1:25,26:51:99:542,0,565 0/1:31,20:51:99:363,0,692 0/1:28,23:51:99:444,0,580 0/0:48,0:48:99:0,109,1185 0/0:52,0:52:99:0,120,1800 0/0:48,0:48:99:0,120,1800 0/0:47,0:47:99:0,120,1800 0/0:49,0:49:99:0,118,1360 0/0:47,0:47:99:0,120,1273 0/0:47,0:47:99:0,118,1479 0/0:50,0:50:99:0,120,1800 0/0:49,0:49:99:0,120,1800 0/0:50,0:50:99:0,120,1800 NW_016690181.1 13682231 . G A 120557 . AC=175;AF=0.108;AN=1624;BaseQRankSum=4.66;DP=38275;ExcessHet=0.0000;FS=1.871;InbreedingCoeff=0.3478;MLEAC=181;MLEAF=0.111;MQ=58.37;MQRankSum=0.00;QD=18.39;ReadPosRankSum=0.00;SOR=1.207 GT:AD:DP:GQ:PGT:PID:PL:PS 1/1:1,45:46:99:.:.:1389,108,0:. 1/1:0,49:49:99:.:.:1542,146,0:. 1/1:0,46:46:99:.:.:1482,138,0:. 0/1:26,25:51:99:.:.:613,0,540:. 0/1:28,18:47:99:.:.:433,0,620:. 0|1:27,17:44:99:0|1:13682222_G_A:633,0,1083:13682222 0/0:48,0:48:99:.:.:0,100,1172:. 0/0:47,0:47:99:.:.:0,106,1108:. 0/0:49,0:49:99:.:.:0,102,1252:. 0/0:51,0:51:99:.:.:0,119,1448:. 0/0:45,0:45:99:.:.:0,113,1307:. 0/0:47,0:47:99:.:.:0,103,1218:. 0/0:47,0:47:99:.:.:0,109,1105:. NW_016690181.1 14664012 . C T 79116.4 . AC=140;AF=0.086;AN=1626;BaseQRankSum=6.74;DP=39171;ExcessHet=0.0036;FS=0.000;InbreedingCoeff=0.2001;MLEAC=145;MLEAF=0.089;MQ=60.00;MQRankSum=0.00;QD=13.05;ReadPosRankSum=0.00;SOR=0.888 GT:AD:DP:GQ:PGT:PID:PL:PS 0/0:50,0:50:99:.:.:0,120,1800:. 0/1:21,24:45:99:.:.:554,0,426:. 0/1:32,17:49:99:.:.:315,0,677:. 0/0:50,0:50:99:.:.:0,120,1800:. 0/0:50,0:50:99:.:.:0,120,1800:. 0/1:27,22:49:99:.:.:485,0,599:. 0/1:29,21:50:99:.:.:469,0,654:. 0/1:26,23:49:99:.:.:491,0,522:. 0/0:50,0:50:99:.:.:0,120,1800:. 0/1:29,21:50:99:.:.:473,0,649:. 0/0:50,0:50:99:.:.:0,120,1800:. 0/0:46,0:46:99:.:.:0,120,1800:. 0/0:48,0:48:99:.:.:0,120,1800:. NW_016690181.1 15490270 . C T 47074 . AC=80;AF=0.049;AN=1630;BaseQRankSum=6.31;DP=39772;ExcessHet=-0.0000;FS=0.000;InbreedingCoeff=0.6030;MLEAC=83;MLEAF=0.051;MQ=60.00;MQRankSum=0.00;QD=17.26;ReadPosRankSum=0.00;SOR=1.872 GT:AD:DP:GQ:PL 0/1:27,22:49:99:454,0,1068 1/1:0,49:49:99:1328,147,0 1/1:0,48:49:99:1303,144,0 1/1:0,50:50:99:1316,150,0 1/1:0,50:50:99:1304,149,0 1/1:0,50:50:99:1333,150,0 0/1:27,23:50:99:465,0,1008 1/1:0,50:50:99:1346,150,0 1/1:0,50:50:99:1377,150,0 1/1:0,49:49:99:1308,146,0 1/1:0,50:50:99:1338,149,0 0/0:49,0:49:99:0,120,1341 0/1:26,24:50:99:470,0,123 NW_016690182.1 133667 . C T 22148.1 . AC=15;AF=9.248e-03;AN=1622;BaseQRankSum=6.27;DP=39935;ExcessHet=0.1429;FS=0.000;InbreedingCoeff=0.4461;MLEAC=15;MLEAF=9.248e-03;MQ=60.00;MQRankSum=0.00;QD=18.09;ReadPosRankSum=0.00;SOR=0.696 GT:AD:DP:GQ:PGT:PID:PL:PS 0|1:54,44:99:99:0|1:133667_C_T:1644,0,2090:133667 0/1:46,49:96:99:.:.:1096,0,889:. 0/0:48,0:48:99:.:.:0,120,1237:. 0/0:49,0:49:99:.:.:0,120,1800:. 0/0:49,0:49:99:.:.:0,120,1326:. 0/0:49,0:49:99:.:.:0,120,1386:. 0/0:49,0:49:99:.:.:0,120,1800:. 0/1:47,48:95:99:.:.:1115,0,939:. 0/0:49,0:49:99:.:.:0,118,1419:. 0/1:48,49:97:99:.:.:1067,0,914:. 0/0:49,0:49:99:.:.:0,120,1800:. 0/0:50,0:50:99:.:.:0,120,1800:. 0|1:58,41:99:99:0|1:133667_C_T:1514,0,2240:133667 NW_016690182.1 1021234 . T C 218860 . AC=377;AF=0.238;AN=1582;BaseQRankSum=-5.966e+00;DP=35766;ExcessHet=0.0000;FS=0.000;InbreedingCoeff=0.2051;MLEAC=405;MLEAF=0.256;MQ=60.00;MQRankSum=0.00;QD=15.54;ReadPosRankSum=0.00;SOR=0.199 GT:AD:DP:GQ:PGT:PID:PL:PS 0/0:47,0:47:99:.:.:0,115,1507:. 0/0:47,0:47:99:.:.:0,120,1800:. 0/1:32,17:49:99:.:.:354,0,883:. 0/1:22,21:43:99:.:.:471,0,520:. 1/1:0,47:47:99:.:.:1323,141,0:. 1/1:0,45:45:99:.:.:1200,134,0:. 0/0:47,0:47:99:.:.:0,110,1276:. 0/0:47,0:47:99:.:.:0,103,1083:. 0/0:48,0:48:99:.:.:0,103,1150:. 0/0:46,0:46:99:.:.:0,108,1036:. 0/1:29,18:47:99:.:.:376,0,774:. 0/0:48,0:48:99:.:.:0,120,1800:. 0/0:46,0:46:99:.:.:0,119,1065:. NW_016690182.1 2094944 . C T 252284 . AC=291;AF=0.179;AN=1622;BaseQRankSum=1.12;DP=52193;ExcessHet=0.0000;FS=0.000;InbreedingCoeff=0.2528;MLEAC=300;MLEAF=0.185;MQ=60.00;MQRankSum=0.00;QD=18.39;ReadPosRankSum=0.00;SOR=0.933 GT:AD:DP:GQ:PGT:PID:PL:PS 0/1:26,22:48:99:.:.:463,0,624:. 0/0:47,0:47:99:.:.:0,120,1800:. 0/0:49,0:49:99:.:.:0,107,1350:. 0/0:50,0:50:99:.:.:0,108,1214:. 0/0:51,0:51:99:.:.:0,100,1137:. 0/0:54,0:54:99:.:.:0,120,1800:. 0/0:52,0:52:99:.:.:0,109,1338:. 0/0:54,0:54:99:.:.:0,110,1294:. 0/1:25,26:51:99:.:.:555,0,527:. 0/0:55,0:55:99:.:.:0,120,1800:. 0/0:52,0:52:99:.:.:0,100,1286:. 0/0:52,0:52:99:.:.:0,107,1187:. 1/1:0,52:52:99:.:.:1392,155,0:. NW_016690182.1 2218313 . T C 45220.9 . AC=50;AF=0.031;AN=1636;BaseQRankSum=-6.363e+00;DP=40107;ExcessHet=0.0000;FS=0.000;InbreedingCoeff=0.4806;MLEAC=52;MLEAF=0.032;MQ=60.00;MQRankSum=0.00;QD=23.69;ReadPosRankSum=0.00;SOR=1.847 GT:AD:DP:GQ:PGT:PID:PL:PS 0|1:32,21:53:99:0|1:2218313_T_C:786,0,1251:2218313 0|1:37,17:54:99:0|1:2218313_T_C:602,0,1497:2218313 1|1:0,47:47:99:1|1:2218313_T_C:2105,141,0:2218313 1|1:0,50:50:99:1|1:2218313_T_C:2222,151,0:2218313 0|1:26,24:50:99:0|1:2218313_T_C:929,0,1019:2218313 1|1:1,48:49:99:1|1:2218313_T_C:2110,102,0:2218313 1|1:0,49:49:99:1|1:2218313_T_C:1969,147,0:2218313 1|1:0,50:50:99:1|1:2218313_T_C:2250,151,0:2218313 1|1:0,48:48:99:1|1:2218313_T_C:2035,144,0:2218313 0|1:32,20:52:99:0|1:2218313_T_C:618,0,1284:2218313 0|1:28,26:54:99:0|1:2218313_T_C:886,0,1097:2218313 0|1:21,32:53:99:0|1:2218313_T_C:1278,0,785:2218313 0|1:25,26:51:99:0|1:2218313_T_C:1016,0,971:2218313 NW_016690182.1 2618045 . C G 482073 . AC=704;AF=0.439;AN=1602;BaseQRankSum=5.18;DP=39160;ExcessHet=0.0637;FS=0.000;InbreedingCoeff=0.0884;MLEAC=743;MLEAF=0.464;MQ=60.00;MQRankSum=0.00;QD=18.16;ReadPosRankSum=0.00;SOR=1.151 GT:AD:DP:GQ:PGT:PID:PL:PS 0/1:24,28:52:99:.:.:632,0,440:. 0/1:26,26:52:99:.:.:566,0,514:. 0/0:49,0:49:99:.:.:0,117,1375:. 0/0:49,0:49:99:.:.:0,116,1348:. 1/1:0,49:49:99:.:.:1344,146,0:. 0/1:28,17:45:99:.:.:347,0,593:. 0/1:27,22:49:99:.:.:419,0,510:. 0/0:48,0:48:99:.:.:0,102,1293:. 0/0:49,0:49:99:.:.:0,106,1420:. 0/0:47,0:47:99:.:.:0,111,1518:. 0/1:27,22:49:99:.:.:501,0,528:. 0/0:48,0:48:99:.:.:0,115,1358:. 0/0:49,0:49:99:.:.:0,120,1800:. NW_016690182.1 3785004 . G T 11181.4 . AC=16;AF=9.804e-03;AN=1632;BaseQRankSum=6.21;DP=42347;ExcessHet=0.0000;FS=0.000;InbreedingCoeff=0.7265;MLEAC=17;MLEAF=0.010;MQ=59.91;MQRankSum=0.00;QD=24.41;ReadPosRankSum=0.00;SOR=4.136 GT:AD:DP:GQ:PL 0/0:59,0:59:99:0,120,1800 0/0:58,0:58:99:0,120,1800 0/1:23,32:55:99:846,0,472 0/0:58,0:58:99:0,120,1604 0/0:57,0:57:99:0,120,1800 0/0:59,0:59:99:0,120,1800 1/1:1,46:47:99:1332,113,0 0/1:25,25:50:99:566,0,523 1/1:0,52:52:99:1451,154,0 1/1:0,49:49:99:1409,147,0 1/1:0,50:50:99:1441,149,0 1/1:0,56:56:99:1667,168,0 1/1:0,48:48:99:1422,144,0 NW_016690182.1 4251401 . C T 2239.56 . AC=4;AF=2.463e-03;AN=1624;BaseQRankSum=4.27;DP=38426;ExcessHet=3.0264;FS=0.000;InbreedingCoeff=0.5370;MLEAC=4;MLEAF=2.463e-03;MQ=60.00;MQRankSum=0.00;QD=12.04;ReadPosRankSum=-2.800e-02;SOR=0.904 GT:AD:DP:GQ:PL 0/0:45,0:45:99:0,103,1096 0/1:27,24:51:99:473,0,565 0/1:23,23:46:99:540,0,545 0/0:48,0:48:99:0,120,1408 0/0:45,0:45:99:0,120,1323 0/0:47,0:47:99:0,120,1800 0/1:16,28:44:99:661,0,308 0/0:45,0:45:99:0,102,1077 0/0:48,0:48:99:0,106,1005 0/0:50,0:50:99:0,120,1800 0/0:48,0:48:99:0,112,1144 0/0:47,0:47:99:0,103,1113 0/0:46,0:46:99:0,109,1115 NW_016690182.1 5287775 . C A 10533.8 . AC=17;AF=0.010;AN=1636;BaseQRankSum=-1.880e-01;DP=40121;ExcessHet=0.0000;FS=0.000;InbreedingCoeff=0.6088;MLEAC=18;MLEAF=0.011;MQ=60.00;MQRankSum=0.00;QD=17.24;ReadPosRankSum=0.292;SOR=1.849 GT:AD:DP:GQ:PL 0/0:47,0:47:99:0,105,1384 1/1:0,51:51:99:1381,152,0 0/1:28,26:54:99:527,0,615 0/0:49,0:49:99:0,120,1800 1/1:0,51:51:99:1470,153,0 0/0:49,0:49:99:0,120,1800 0/0:49,0:49:99:0,119,1361 0/0:47,0:47:99:0,120,1800 0/1:25,24:49:99:521,0,570 0/0:51,0:51:99:0,120,1800 0/0:49,0:49:99:0,120,1800 1/1:0,51:51:99:1330,152,0 0/1:27,24:51:99:515,0,621 NW_016690182.1 7683221 . A G 1792.66 . AC=12;AF=7.353e-03;AN=1632;BaseQRankSum=-6.522e+00;DP=39358;ExcessHet=0.0888;FS=0.000;InbreedingCoeff=0.4889;MLEAC=12;MLEAF=7.353e-03;MQ=60.00;MQRankSum=0.00;QD=3.30;ReadPosRankSum=0.00;SOR=1.592 GT:AD:DP:GQ:PL 0/1:29,21:50:60:60,0,700 0/1:33,17:50:19:19,0,805 0/0:48,0:48:99:0,108,1270 0/0:48,0:48:99:0,101,1139 0/0:50,0:50:99:0,120,1800 0/1:32,18:50:29:29,0,776 1/1:0,50:50:99:1305,140,0 0/0:47,0:47:99:0,119,1083 0/0:48,0:48:99:0,108,1305 0/0:47,0:47:99:0,114,757 0/0:46,0:46:99:0,120,1800 0/0:50,0:50:99:0,120,1800 0/0:49,0:49:99:0,120,1800 NW_016690182.1 8085217 . C T 2984.38 . AC=5;AF=3.129e-03;AN=1598;BaseQRankSum=5.77;DP=36279;ExcessHet=3.0376;FS=19.201;InbreedingCoeff=0.5377;MLEAC=5;MLEAF=3.129e-03;MQ=60.00;MQRankSum=0.00;QD=12.18;ReadPosRankSum=0.00;SOR=3.307 GT:AD:DP:GQ:PGT:PID:PL:PS 0/0:50,0:50:99:.:.:0,111,1182:. 0/0:49,0:49:99:.:.:0,116,1350:. 0/1:26,22:48:99:.:.:547,0,619:. 0/0:49,0:49:99:.:.:0,117,1417:. 0|1:25,25:50:99:0|1:8085217_C_T:593,0,810:8085217 0/0:49,0:49:99:.:.:0,120,1800:. 0/1:26,24:50:99:.:.:611,0,621:. 0/0:48,0:48:99:.:.:0,120,1800:. 0/0:47,0:47:99:.:.:0,120,1800:. 0/0:48,0:48:99:.:.:0,109,1409:. 0/0:48,0:48:99:.:.:0,111,688:. 0/0:47,0:47:99:.:.:0,117,1167:. 0/0:46,0:46:99:.:.:0,114,708:. NW_016690182.1 8205426 . G T 4270.22 . AC=9;AF=5.495e-03;AN=1638;BaseQRankSum=-4.806e+00;DP=39042;ExcessHet=3.1062;FS=0.000;InbreedingCoeff=0.4404;MLEAC=9;MLEAF=5.495e-03;MQ=60.00;MQRankSum=0.00;QD=9.82;ReadPosRankSum=0.00;SOR=0.640 GT:AD:DP:GQ:PL 0/0:51,0:51:99:0,120,1800 0/0:50,0:50:99:0,120,1800 0/0:51,0:51:99:0,120,1800 0/1:31,16:48:99:317,0,714 0/1:18,31:49:99:712,0,334 0/1:23,24:47:99:525,0,519 0/0:47,0:47:99:0,120,1800 0/1:30,19:49:99:362,0,646 0/0:48,0:48:99:0,115,1283 0/0:51,0:51:99:0,120,1800 0/1:28,21:49:99:409,0,609 0/0:55,0:55:99:0,120,1800 0/0:50,0:50:99:0,120,1800 NW_016690182.1 8570755 . C T 113263 . AC=144;AF=0.092;AN=1560;BaseQRankSum=5.60;DP=28554;ExcessHet=-0.0000;FS=0.000;InbreedingCoeff=0.4818;MLEAC=155;MLEAF=0.099;MQ=60.00;MQRankSum=0.00;QD=27.15;ReadPosRankSum=0.00;SOR=1.204 GT:AD:DP:GQ:PGT:PID:PL:PS 1|1:0,48:48:99:1|1:8570717_G_A:2160,144,0:8570717 0|1:27,23:50:99:0|1:8570755_C_T:884,0,1064:8570755 0|1:27,23:50:99:0|1:8570717_G_A:884,0,1064:8570717 0|1:31,19:50:99:0|1:8570717_G_A:704,0,1244:8570717 1|1:0,50:50:99:1|1:8570717_G_A:2250,151,0:8570717 1|1:0,50:50:99:1|1:8570739_C_G:2250,151,0:8570739 1|1:1,21:22:21:1|1:8570727_T_A:900,21,0:8570727 1|1:0,23:24:69:1|1:8570739_C_G:1035,69,0:8570739 1|1:0,50:50:99:1|1:8570739_C_G:2250,151,0:8570739 0|1:28,21:49:99:0|1:8570739_C_G:798,0,1113:8570739 1|1:0,42:42:99:1|1:8570755_C_T:1890,126,0:8570755 0/0:49,0:49:99:.:.:0,120,1800:. 1|1:0,50:50:99:1|1:8570739_C_G:2250,151,0:8570739 NW_016690182.1 9832786 . T C 5856.95 . AC=10;AF=6.143e-03;AN=1628;BaseQRankSum=-5.432e+00;DP=38924;ExcessHet=0.0000;FS=0.000;InbreedingCoeff=0.5916;MLEAC=10;MLEAF=6.143e-03;MQ=59.93;MQRankSum=0.00;QD=17.18;ReadPosRankSum=0.00;SOR=2.013 GT:AD:DP:GQ:PL 0/0:51,0:51:99:0,104,1283 0/0:49,0:49:99:0,120,1800 0/0:15,0:15:6:0,6,300 0/0:48,0:48:99:0,106,1283 0/1:25,25:50:99:504,0,554 0/1:21,25:46:99:537,0,492 0/1:25,26:51:99:530,0,613 0/0:48,0:48:99:0,105,1475 1/1:0,48:48:99:1358,144,0 0/0:49,0:49:99:0,120,1800 0/0:48,0:48:99:0,120,1800 0/0:50,0:50:99:0,120,1800 0/0:48,0:48:99:0,115,1322 NW_016690182.1 9914011 . G A 2017.48 . AC=3;AF=1.840e-03;AN=1630;BaseQRankSum=6.05;DP=40756;ExcessHet=0.0040;FS=0.000;InbreedingCoeff=0.6232;MLEAC=3;MLEAF=1.840e-03;MQ=60.00;MQRankSum=0.00;QD=20.17;ReadPosRankSum=0.00;SOR=1.755 GT:AD:DP:GQ:PL 0/0:49,0:49:99:0,119,1511 1/1:0,50:50:99:1630,150,0 0/1:31,19:50:99:466,0,781 0/0:50,0:50:99:0,120,1800 0/0:50,0:50:99:0,120,1800 0/0:50,0:50:99:0,120,1800 0/0:48,0:48:99:0,117,1349 0/0:49,0:49:99:0,120,1800 0/0:49,0:49:99:0,120,1800 0/0:50,0:50:99:0,120,1800 0/0:48,0:48:99:0,120,1800 0/0:48,0:48:99:0,120,1800 0/0:49,0:49:99:0,120,1800 NW_016690182.1 10435216 . C T 7946.58 . AC=8;AF=5.031e-03;AN=1590;BaseQRankSum=4.48;DP=36412;ExcessHet=0.0000;FS=0.000;InbreedingCoeff=0.6374;MLEAC=9;MLEAF=5.660e-03;MQ=60.00;MQRankSum=0.00;QD=23.17;ReadPosRankSum=0.00;SOR=3.489 GT:AD:DP:GQ:PL 0/0:49,0:49:99:0,116,1290 1/1:1,97:98:99:2743,266,0 1/1:0,98:98:99:2836,294,0 0/0:48,0:48:99:0,108,1599 0/0:49,0:49:99:0,120,1800 0/0:49,0:49:99:0,120,1800 0/0:66,0:66:99:0,120,1800 0/0:52,0:52:99:0,120,1800 0/0:74,0:74:99:0,120,1800 0/0:49,0:49:99:0,116,1374 0/0:87,0:87:99:0,120,1800 0/0:44,0:44:99:0,107,906 0/0:48,0:48:99:0,120,1800 NW_016690182.1 10516301 . A G 29812.3 . AC=54;AF=0.034;AN=1600;BaseQRankSum=-5.697e+00;DP=32886;ExcessHet=0.0000;FS=2.766;InbreedingCoeff=0.4219;MLEAC=57;MLEAF=0.036;MQ=60.00;MQRankSum=0.00;QD=14.20;ReadPosRankSum=0.00;SOR=1.104 GT:AD:DP:GQ:PGT:PID:PL:PS 1/1:0,49:49:99:.:.:1281,147,0:. 0/1:28,21:49:99:.:.:426,0,687:. 1/1:0,48:48:99:.:.:1270,143,0:. 0/0:48,0:48:99:.:.:0,120,1800:. 0/1:28,20:48:99:.:.:392,0,676:. 0/1:24,25:49:99:.:.:535,0,589:. 0/1:32,17:49:99:.:.:325,0,804:. 0/0:33,0:33:99:.:.:0,99,727:. 0/0:47,0:47:99:.:.:0,116,1411:. 0/0:48,0:48:99:.:.:0,120,1800:. 0/0:46,0:46:99:.:.:0,107,1001:. 0/1:18,32:50:99:.:.:789,0,415:. 0/0:48,0:48:99:.:.:0,103,1437:. NW_016690182.1 10645990 . C A 343707 . AC=464;AF=0.285;AN=1630;BaseQRankSum=6.62;DP=40343;ExcessHet=0.0000;FS=0.000;InbreedingCoeff=0.1856;MLEAC=480;MLEAF=0.294;MQ=59.99;MQRankSum=0.00;QD=18.53;ReadPosRankSum=0.00;SOR=0.535 GT:AD:DP:GQ:PGT:PID:PL:PS 0/1:28,27:55:99:.:.:754,0,650:. 1/1:0,50:50:99:.:.:1632,150,0:. 0/0:50,0:50:99:.:.:0,120,1800:. 0/0:47,0:47:99:.:.:0,120,1800:. 0/1:24,29:53:99:.:.:787,0,503:. 0/0:49,0:49:99:.:.:0,120,1800:. 1/1:0,50:50:99:.:.:1493,150,0:. 0/1:29,20:49:99:.:.:508,0,657:. 1/1:0,48:48:99:.:.:1567,144,0:. 1/1:0,53:53:99:.:.:1618,159,0:. 1/1:0,53:53:99:.:.:1669,159,0:. 0/1:28,25:53:99:.:.:655,0,616:. 1/1:0,51:51:99:.:.:1596,153,0:. NW_016690182.1 10754765 . A G 553447 . AC=657;AF=0.404;AN=1626;BaseQRankSum=-1.308e+00;DP=40106;ExcessHet=0.0000;FS=0.000;InbreedingCoeff=0.1693;MLEAC=683;MLEAF=0.420;MQ=60.00;MQRankSum=0.00;QD=22.57;ReadPosRankSum=0.00;SOR=0.617 GT:AD:DP:GQ:PGT:PID:PL:PS 0|1:19,31:50:99:0|1:10754765_A_G:1244,0,704:10754765 1|1:0,49:49:99:1|1:10754765_A_G:2190,147,0:10754765 0/0:50,0:50:99:.:.:0,120,1800:. 1/1:0,51:51:99:.:.:1896,153,0:. 0|1:27,23:50:99:0|1:10754765_A_G:876,0,1056:10754765 1|1:0,49:49:99:1|1:10754765_A_G:2197,147,0:10754765 0/0:49,0:49:99:.:.:0,120,1800:. 0|1:30,19:49:99:0|1:10754765_A_G:708,0,1192:10754765 0/0:49,0:49:99:.:.:0,119,1329:. 1|1:0,50:50:99:1|1:10754765_A_G:2242,151,0:10754765 0|1:25,25:50:99:0|1:10754765_A_G:966,0,967:10754765 1|1:0,49:49:99:1|1:10754765_A_G:2198,147,0:10754765 1|1:0,48:48:99:1|1:10754765_A_G:2153,144,0:10754765 NW_016690182.1 10834786 . C T 214540 . AC=260;AF=0.161;AN=1616;BaseQRankSum=5.05;DP=37642;ExcessHet=-0.0000;FS=0.000;InbreedingCoeff=0.4249;MLEAC=271;MLEAF=0.168;MQ=60.00;MQRankSum=0.00;QD=23.79;ReadPosRankSum=0.00;SOR=1.441 GT:AD:DP:GQ:PGT:PID:PL:PS 1|1:0,46:46:99:1|1:10834786_C_T:2065,138,0:10834786 1|1:0,48:48:99:1|1:10834786_C_T:2141,144,0:10834786 0/1:26,23:49:99:.:.:499,0,545:. 1/1:0,48:48:99:.:.:2156,144,0:. 0/1:20,30:50:99:.:.:723,0,405:. 1|1:0,47:47:99:1|1:10834786_C_T:2099,141,0:10834786 1|1:0,44:44:99:1|1:10834786_C_T:1955,133,0:10834786 1|1:0,51:51:99:1|1:10834786_C_T:2243,154,0:10834786 0/1:24,20:44:99:.:.:396,0,458:. 0/1:26,25:51:99:.:.:532,0,507:. 0|1:30,19:49:99:0|1:10834780_G_A:708,0,1181:10834780 0/1:30,17:47:99:.:.:317,0,604:. 1|1:0,48:48:99:1|1:10834786_C_T:2087,144,0:10834786 NW_016690182.1 11114700 . G A 143508 . AC=159;AF=0.106;AN=1502;BaseQRankSum=6.44;DP=39087;ExcessHet=0.0000;FS=0.000;InbreedingCoeff=0.3418;MLEAC=179;MLEAF=0.119;MQ=59.98;MQRankSum=0.00;QD=22.32;ReadPosRankSum=0.00;SOR=1.265 GT:AD:DP:GQ:PGT:PID:PL:PS 0/0:47,0:47:99:.:.:0,103,750:. 0/0:49,0:49:99:.:.:0,107,793:. 0/0:49,0:49:99:.:.:0,120,1800:. 0|1:25,24:49:99:0|1:11114700_G_A:884,0,788:11114700 0|1:24,21:45:99:0|1:11114700_G_A:810,0,764:11114700 0/0:46,0:46:99:.:.:0,120,1416:. 0|1:31,17:48:99:0|1:11114700_G_A:621,0,1251:11114700 0|1:20,26:46:99:0|1:11114700_G_A:1025,0,631:11114700 0/0:48,0:48:99:.:.:0,120,1800:. 0/0:46,0:46:99:.:.:0,100,1334:. 0/0:51,0:51:99:.:.:0,120,1800:. 0/0:48,0:48:99:.:.:0,118,1156:. 0/0:49,0:49:99:.:.:0,104,1318:. NW_016690182.1 11952297 . C T 154098 . AC=232;AF=0.143;AN=1622;BaseQRankSum=6.28;DP=40020;ExcessHet=0.0007;FS=0.000;InbreedingCoeff=0.1785;MLEAC=241;MLEAF=0.149;MQ=60.00;MQRankSum=0.00;QD=15.23;ReadPosRankSum=0.00;SOR=0.609 GT:AD:DP:GQ:PGT:PID:PL:PS 0/0:49,0:49:99:.:.:0,120,1800:. 0/0:50,0:50:99:.:.:0,120,1800:. 0/0:49,0:49:99:.:.:0,120,1800:. 0|1:28,21:49:99:0|1:11952290_C_T:798,0,1113:11952290 0/1:29,20:49:99:.:.:486,0,682:. 0/0:49,0:49:99:.:.:0,120,1421:. 0/1:22,27:49:99:.:.:655,0,439:. 1/1:1,46:47:99:.:.:1379,116,0:. 0/0:49,0:49:99:.:.:0,120,1800:. 0/0:50,0:50:99:.:.:0,120,1800:. 0/1:29,21:50:99:.:.:468,0,653:. 0/0:49,0:49:99:.:.:0,120,1800:. 0/0:49,0:49:99:.:.:0,120,1800:. NW_016690182.1 13551111 . A G 77.53 . AC=4;AF=2.463e-03;AN=1624;BaseQRankSum=-6.384e+00;DP=38260;ExcessHet=3.0264;FS=0.000;InbreedingCoeff=0.5715;MLEAC=2;MLEAF=1.232e-03;MQ=60.00;MQRankSum=0.00;QD=0.41;ReadPosRankSum=0.00;SOR=0.336 GT:AD:DP:GQ:PL 0/0:46,0:46:99:0,120,1800 0/0:48,0:48:99:0,120,1800 0/0:46,0:46:99:0,108,1166 0/1:28,21:49:62:62,0,667 0/0:48,0:48:99:0,120,1800 0/0:26,0:26:78:0,78,564 0/0:46,0:46:99:0,117,1392 0/0:46,0:46:99:0,120,1800 0/0:45,0:45:99:0,120,1800 0/0:48,0:48:99:0,120,1800 0/1:31,15:46:12:12,0,739 0/1:32,17:49:22:22,0,831 0/1:25,20:45:64:64,0,641 NW_016690182.1 13746979 . A G 368.07 . AC=5;AF=3.060e-03;AN=1634;BaseQRankSum=-6.659e+00;DP=38859;ExcessHet=3.0370;FS=0.000;InbreedingCoeff=0.5384;MLEAC=5;MLEAF=3.060e-03;MQ=60.00;MQRankSum=0.00;QD=1.47;ReadPosRankSum=0.00;SOR=0.647 GT:AD:DP:GQ:PL 0/0:56,0:56:99:0,120,1800 0/0:59,0:59:99:0,120,1800 0/0:49,0:49:99:0,120,1373 0/1:27,21:48:78:78,0,713 0/1:30,25:55:84:84,0,763 0/0:54,0:54:99:0,111,1710 0/1:24,25:49:99:102,0,588 0/0:45,0:45:99:0,120,1800 0/0:49,0:49:99:0,120,1800 0/0:52,0:52:99:0,120,1800 0/0:52,0:52:99:0,120,1800 0/0:49,0:49:99:0,120,1800 0/0:48,0:48:99:0,116,1205 NW_016690182.1 14381348 . C T 17652.1 . AC=26;AF=0.016;AN=1606;BaseQRankSum=5.63;DP=41075;ExcessHet=-0.0000;FS=0.000;InbreedingCoeff=0.6779;MLEAC=28;MLEAF=0.017;MQ=60.00;MQRankSum=0.00;QD=23.23;ReadPosRankSum=0.289;SOR=3.894 GT:AD:DP:GQ:PL 1/1:0,58:58:99:1580,171,0 1/1:0,50:50:99:1425,150,0 1/1:0,49:49:99:1377,147,0 0/1:24,26:50:99:541,0,444 0/1:22,29:51:99:666,0,409 1/1:0,47:47:99:1301,141,0 1/1:1,48:49:99:1306,137,0 0/0:50,0:50:99:0,104,1108 0/0:47,0:47:99:0,120,1800 0/0:51,0:51:99:0,120,1800 1/1:0,55:55:99:1550,164,0 0/0:50,0:50:99:0,107,1153 0/0:52,0:52:99:0,120,1800 NW_016690182.1 15175692 . A C 3165.26 . AC=8;AF=4.884e-03;AN=1638;BaseQRankSum=-6.386e+00;DP=39654;ExcessHet=0.0373;FS=24.358;InbreedingCoeff=0.5414;MLEAC=8;MLEAF=4.884e-03;MQ=60.00;MQRankSum=0.00;QD=8.92;ReadPosRankSum=-2.240e-01;SOR=3.908 GT:AD:DP:GQ:PGT:PID:PL:PS 0/1:24,24:48:99:.:.:448,0,616:. 0/0:52,0:52:99:.:.:0,99,1284:. 0/0:48,0:48:99:.:.:0,109,1361:. 0/0:49,0:49:99:.:.:0,120,1800:. 0/0:49,0:49:99:.:.:0,116,1260:. 0/0:55,0:55:99:.:.:0,120,1800:. 0/0:55,0:55:99:.:.:0,120,1800:. 0/0:46,0:46:99:.:.:0,116,1462:. 1/1:0,53:53:99:.:.:1143,156,0:. 0/0:48,0:48:99:.:.:0,119,1328:. 0/1:24,24:48:99:.:.:133,0,577:. 0|1:25,26:51:99:0|1:15175692_A_C:439,0,946:15175692 0/0:47,0:47:99:.:.:0,116,1263:. NW_016690183.1 294134 . G A 2965.52 . AC=6;AF=3.717e-03;AN=1614;BaseQRankSum=6.21;DP=37934;ExcessHet=3.0508;FS=0.000;InbreedingCoeff=0.5465;MLEAC=6;MLEAF=3.717e-03;MQ=60.00;MQRankSum=0.00;QD=10.59;ReadPosRankSum=0.00;SOR=0.767 GT:AD:DP:GQ:PL 0/1:21,27:48:99:615,0,351 0/0:51,0:51:99:0,120,1800 0/1:27,20:47:99:434,0,522 0/0:52,0:52:99:0,105,1395 0/1:23,25:48:99:547,0,367 0/1:18,25:43:52:480,0,52 0/0:50,0:50:99:0,120,1800 0/0:48,0:48:99:0,108,1037 0/0:54,0:54:99:0,120,1800 0/0:54,0:54:99:0,112,1370 0/1:27,18:45:99:352,0,134 0/0:51,0:51:99:0,109,1605 0/0:49,0:49:99:0,118,1119 NW_016690183.1 1089412 . G A 2345.22 . AC=4;AF=2.451e-03;AN=1632;BaseQRankSum=5.27;DP=39326;ExcessHet=0.0080;FS=0.000;InbreedingCoeff=0.6138;MLEAC=4;MLEAF=2.451e-03;MQ=60.00;MQRankSum=0.00;QD=15.85;ReadPosRankSum=-9.170e-01;SOR=1.609 GT:AD:DP:GQ:PL 0/0:48,0:48:99:0,120,1258 0/0:46,0:46:99:0,120,1800 0/0:49,0:49:99:0,120,1800 0/0:48,0:48:99:0,117,1199 0/0:48,0:48:99:0,104,1190 0/0:47,0:47:99:0,116,1472 0/1:23,25:48:99:569,0,490 0/0:49,0:49:99:0,115,1311 0/1:26,25:51:99:521,0,555 0/0:48,0:48:99:0,120,1800 0/0:48,0:48:99:0,112,1321 1/1:0,49:49:99:1353,146,0 0/0:49,0:49:99:0,120,1800 NW_016690183.1 2266837 . A G 3406.64 . 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AC=8;AF=4.908e-03;AN=1630;BaseQRankSum=-6.545e+00;DP=49940;ExcessHet=0.0002;FS=0.000;InbreedingCoeff=0.5864;MLEAC=8;MLEAF=4.908e-03;MQ=59.88;MQRankSum=0.00;QD=16.18;ReadPosRankSum=0.00;SOR=1.464 GT:AD:DP:GQ:PL 0/0:67,0:67:99:0,120,1800 0/1:30,31:61:99:717,0,737 0/1:30,22:52:99:490,0,823 1/1:0,57:57:99:1694,171,0 0/0:63,0:63:99:0,120,1800 0/0:66,0:66:99:0,120,1800 0/1:32,21:53:99:444,0,824 0/0:56,0:56:99:0,120,1800 0/0:63,0:63:99:0,120,1800 0/0:69,0:69:99:0,120,1800 0/0:63,0:63:99:0,120,1800 0/0:51,0:51:99:0,120,1800 0/0:60,0:60:99:0,120,1800 NW_016690183.1 8304099 . A C 199056 . 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AC=191;AF=0.117;AN=1628;BaseQRankSum=-1.184e+00;DP=39661;ExcessHet=0.0002;FS=1.371;InbreedingCoeff=0.2006;MLEAC=198;MLEAF=0.122;MQ=60.00;MQRankSum=0.00;QD=13.84;ReadPosRankSum=0.00;SOR=0.511 GT:AD:DP:GQ:PL 0/1:27,21:48:99:415,0,578 1/1:0,50:50:99:1396,149,0 0/0:50,0:50:99:0,120,1800 1/1:0,49:49:99:1330,147,0 0/0:49,0:49:99:0,118,1272 0/0:48,0:48:99:0,120,1800 0/0:49,0:49:99:0,120,1800 0/0:49,0:49:99:0,116,1261 0/0:46,0:46:99:0,120,1800 0/0:48,0:48:99:0,120,1262 0/1:21,29:50:99:663,0,450 0/0:50,0:50:99:0,120,1800 0/0:49,0:49:99:0,120,1412 NW_016690184.1 1640358 . T C 18705.8 . AC=29;AF=0.018;AN=1620;BaseQRankSum=-5.637e+00;DP=38845;ExcessHet=0.0000;FS=0.000;InbreedingCoeff=0.7065;MLEAC=29;MLEAF=0.018;MQ=60.00;MQRankSum=0.00;QD=23.15;ReadPosRankSum=0.00;SOR=2.075 GT:AD:DP:GQ:PL 0/0:50,0:50:99:0,120,1800 0/1:23,29:52:99:700,0,521 0/0:50,0:50:99:0,119,1529 1/1:0,52:52:99:1543,156,0 1/1:0,50:50:99:1466,150,0 1/1:0,49:49:99:1457,147,0 0/1:25,26:51:99:632,0,629 1/1:0,50:50:99:1432,150,0 0/1:24,26:50:99:595,0,560 1/1:0,52:52:99:1587,156,0 1/1:0,51:51:99:1548,152,0 1/1:0,51:51:99:1494,153,0 1/1:0,50:50:99:1381,150,0 NW_016690184.1 1784651 . A T 5222.12 . AC=6;AF=3.681e-03;AN=1630;BaseQRankSum=-6.486e+00;DP=54442;ExcessHet=0.0000;FS=0.000;InbreedingCoeff=0.6171;MLEAC=6;MLEAF=3.681e-03;MQ=60.00;MQRankSum=0.00;QD=25.72;ReadPosRankSum=1.66;SOR=2.005 GT:AD:DP:GQ:PGT:PID:PL:PS 0/0:54,0:54:99:.:.:0,117,1462:. 0/0:60,0:60:99:.:.:0,120,1800:. 0/0:62,0:62:99:.:.:0,120,1800:. 0/1:30,25:55:99:.:.:507,0,794:. 0/0:63,0:63:99:.:.:0,120,1800:. 0/0:57,0:57:99:.:.:0,120,1800:. 0/0:51,0:51:99:.:.:0,120,1800:. 0/0:54,0:54:99:.:.:0,120,1800:. 1|1:0,48:48:99:1|1:1784651_A_T:2153,144,0:1784651 0/1:27,23:50:99:.:.:465,0,683:. 0/0:51,0:51:0:.:.:0,0,54:. 0/0:52,0:52:99:.:.:0,120,1800:. 1|1:0,50:50:99:1|1:1784651_A_T:2236,151,0:1784651 NW_016690184.1 2351417 . C T 61830.1 . AC=65;AF=0.041;AN=1604;BaseQRankSum=6.20;DP=39233;ExcessHet=0.0000;FS=0.000;InbreedingCoeff=0.7431;MLEAC=68;MLEAF=0.042;MQ=60.00;MQRankSum=0.00;QD=31.81;ReadPosRankSum=0.00;SOR=1.456 GT:AD:DP:GQ:PGT:PID:PL:PS 0/0:45,0:45:99:.:.:0,120,1800:. 1|1:1,48:49:99:1|1:2351417_C_T:2115,102,0:2351417 0/0:50,0:50:99:.:.:0,120,1800:. 0/0:50,0:50:99:.:.:0,120,1800:. 0/0:50,0:50:99:.:.:0,120,1800:. 0/1:20,27:47:99:.:.:609,0,394:. 0/0:50,0:50:99:.:.:0,120,1800:. 0/0:50,0:50:99:.:.:0,120,1800:. 0/0:49,0:49:99:.:.:0,120,1800:. 0/0:49,0:49:99:.:.:0,120,1800:. 0/0:50,0:50:99:.:.:0,120,1800:. 0/0:50,0:50:99:.:.:0,120,1800:. 0/0:50,0:50:99:.:.:0,120,1800:. NW_016690184.1 4322055 . C T 3753.24 . AC=5;AF=3.067e-03;AN=1630;BaseQRankSum=5.94;DP=39175;ExcessHet=0.0134;FS=0.000;InbreedingCoeff=0.5923;MLEAC=5;MLEAF=3.067e-03;MQ=60.00;MQRankSum=0.00;QD=18.67;ReadPosRankSum=0.00;SOR=1.633 GT:AD:DP:GQ:PGT:PID:PL:PS 1|1:0,50:50:99:1|1:4322030_T_G:1621,150,0:4322030 0/0:49,0:49:99:.:.:0,120,1800:. 0/1:10,39:49:99:.:.:1060,0,226:. 0/0:45,0:45:99:.:.:0,105,1411:. 0/0:53,0:53:99:.:.:0,120,1800:. 0/0:52,0:52:99:.:.:0,120,1800:. 0/0:48,0:48:99:.:.:0,120,1800:. 0/0:50,0:50:99:.:.:0,120,1800:. 0/1:30,21:51:99:.:.:529,0,764:. 0/0:50,0:50:99:.:.:0,120,1800:. 0/0:53,0:53:99:.:.:0,120,1800:. 0/1:26,25:51:99:.:.:659,0,613:. 0/0:50,0:50:99:.:.:0,120,1800:. NW_016690184.1 5475173 . G T 16493 . AC=29;AF=0.018;AN=1618;BaseQRankSum=-4.331e+00;DP=40834;ExcessHet=0.0559;FS=0.000;InbreedingCoeff=0.3953;MLEAC=30;MLEAF=0.019;MQ=60.00;MQRankSum=0.00;QD=12.64;ReadPosRankSum=0.00;SOR=0.821 GT:AD:DP:GQ:PL 0/0:49,0:49:99:0,120,1800 0/0:49,0:49:99:0,99,1236 0/0:50,0:50:99:0,120,1800 0/1:22,27:49:99:652,0,478 0/0:49,0:49:99:0,120,1800 0/1:27,22:49:99:426,0,603 0/1:24,26:50:99:569,0,509 1/1:2,48:50:93:1270,93,0 0/0:48,0:48:99:0,120,1800 0/1:23,27:50:99:631,0,548 0/1:25,25:50:99:561,0,587 0/0:49,0:49:99:0,119,1412 0/1:27,23:50:99:488,0,601 NW_016690184.1 6020656 . G A 21696.1 . AC=33;AF=0.021;AN=1598;BaseQRankSum=6.85;DP=37895;ExcessHet=-0.0000;FS=0.000;InbreedingCoeff=0.6421;MLEAC=35;MLEAF=0.022;MQ=60.00;MQRankSum=0.00;QD=21.92;ReadPosRankSum=0.00;SOR=2.850 GT:AD:DP:GQ:PL 1/1:0,50:50:99:1537,150,0 1/1:0,49:49:99:1390,147,0 0/1:26,24:50:99:564,0,544 1/1:1,49:50:99:1338,125,0 0/1:29,21:50:99:434,0,565 1/1:0,50:50:99:1477,150,0 1/1:0,50:50:99:1424,150,0 1/1:0,49:49:99:1455,147,0 1/1:1,47:48:99:1371,117,0 0/1:35,15:50:99:281,0,783 0/1:30,19:49:99:399,0,653 1/1:0,50:50:99:1487,150,0 0/1:21,29:50:99:684,0,407 NW_016690184.1 6686596 . G A 23543.8 . 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AC=197;AF=0.123;AN=1598;BaseQRankSum=-1.719e+00;DP=41040;ExcessHet=0.0000;FS=0.000;InbreedingCoeff=0.2972;MLEAC=207;MLEAF=0.130;MQ=60.00;MQRankSum=0.00;QD=15.27;ReadPosRankSum=0.00;SOR=0.977 GT:AD:DP:GQ:PGT:PID:PL:PS 0/1:50,9:59:91:.:.:91,0,1289:. 0/1:23,29:52:99:.:.:659,0,484:. 0/1:28,21:49:99:.:.:412,0,638:. 1/1:0,53:53:99:.:.:1509,159,0:. 0/1:21,30:51:99:.:.:644,0,451:. 0/0:51,0:51:99:.:.:0,112,1341:. 0/1:23,25:48:99:.:.:550,0,517:. 1|1:0,50:50:99:1|1:7096062_G_T:1835,150,0:7096062 0/1:26,27:53:99:.:.:616,0,589:. 1/1:0,49:49:99:.:.:1332,147,0:. 0/1:23,28:51:99:.:.:640,0,507:. 0/1:30,20:50:99:.:.:422,0,730:. 1/1:0,50:50:99:.:.:1438,150,0:. NW_016690184.1 7417068 . G A 15480 . 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AC=3;AF=1.845e-03;AN=1626;BaseQRankSum=-6.899e+00;DP=38780;ExcessHet=3.0183;FS=0.000;InbreedingCoeff=0.5657;MLEAC=3;MLEAF=1.845e-03;MQ=60.00;MQRankSum=0.00;QD=8.06;ReadPosRankSum=0.00;SOR=0.444 GT:AD:DP:GQ:PL 0/0:50,0:50:99:0,120,1800 0/0:48,0:48:99:0,120,1800 0/0:50,0:50:99:0,120,1800 0/1:29,21:50:99:392,0,742 0/0:49,0:49:99:0,120,1800 0/0:50,0:50:99:0,120,1800 0/0:50,0:50:99:0,120,1800 0/0:50,0:50:99:0,120,1800 0/1:30,20:50:99:402,0,832 0/0:50,0:50:99:0,120,1800 0/0:50,0:50:99:0,120,1800 0/0:50,0:50:99:0,120,1800 0/1:27,23:50:99:488,0,731 NW_016690184.1 9854282 . A C 409143 . 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AC=9;AF=5.521e-03;AN=1630;BaseQRankSum=-6.145e+00;DP=39025;ExcessHet=0.0483;FS=0.000;InbreedingCoeff=0.5303;MLEAC=9;MLEAF=5.521e-03;MQ=60.00;MQRankSum=0.00;QD=7.02;ReadPosRankSum=0.00;SOR=1.099 GT:AD:DP:GQ:PL 0/1:29,20:49:99:326,0,663 0/0:50,0:50:99:0,108,863 0/1:20,29:49:99:543,0,403 0/0:49,0:49:99:0,116,1558 0/0:50,0:50:99:0,118,816 0/1:25,24:49:99:403,0,529 0/0:48,0:48:99:0,120,1800 0/0:48,0:48:99:0,120,1800 0/0:49,0:49:99:0,118,1047 0/0:49,0:49:99:0,120,1800 0/1:22,26:48:99:128,0,474 0/0:48,0:48:99:0,120,1800 0/0:47,0:47:99:0,120,1800 NW_016690185.1 6111996 . G C 2896.33 . AC=4;AF=2.454e-03;AN=1630;BaseQRankSum=-4.856e+00;DP=38962;ExcessHet=3.0263;FS=0.000;InbreedingCoeff=0.5462;MLEAC=4;MLEAF=2.454e-03;MQ=60.00;MQRankSum=0.00;QD=14.85;ReadPosRankSum=0.00;SOR=0.834 GT:AD:DP:GQ:PGT:PID:PL:PS 0/0:47,0:47:99:.:.:0,120,1395:. 0/1:24,26:50:99:.:.:538,0,496:. 0/0:46,0:46:99:.:.:0,120,1800:. 0|1:26,22:48:99:0|1:6111996_G_C:838,0,1026:6111996 0/0:48,0:48:99:.:.:0,120,1346:. 0/0:46,0:46:99:.:.:0,120,1800:. 0|1:23,26:49:99:0|1:6111996_G_C:995,0,870:6111996 0/0:45,0:45:99:.:.:0,111,1156:. 0/0:47,0:47:99:.:.:0,110,1384:. 0/0:47,0:47:99:.:.:0,116,1105:. 0/0:48,0:48:99:.:.:0,118,1322:. 0/0:48,0:48:99:.:.:0,120,1800:. 0/0:49,0:49:99:.:.:0,120,1800:. NW_016690185.1 6318342 . G A 18670.1 . 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AC=365;AF=0.227;AN=1606;BaseQRankSum=5.81;DP=36782;ExcessHet=0.0000;FS=0.000;InbreedingCoeff=0.4260;MLEAC=384;MLEAF=0.239;MQ=60.00;MQRankSum=0.00;QD=18.47;ReadPosRankSum=0.00;SOR=0.699 GT:AD:DP:GQ:PGT:PID:PL:PS 0/0:48,0:48:99:.:.:0,114,717:. 0/0:51,0:51:99:.:.:0,103,1112:. 0/0:49,0:49:99:.:.:0,100,1284:. 0/0:53,0:53:99:.:.:0,120,1800:. 0/1:20,30:50:77:.:.:606,0,77:. 0/0:48,0:48:99:.:.:0,120,1800:. 0/1:28,19:47:99:.:.:363,0,152:. 0/1:29,19:48:99:.:.:377,0,502:. 1/1:0,49:49:99:.:.:1284,147,0:. 0/0:50,0:50:99:.:.:0,117,867:. 0/0:50,0:50:99:.:.:0,120,1800:. 1/1:0,49:49:99:.:.:1323,147,0:. 1/1:0,49:49:99:.:.:1286,147,0:. NW_016690185.1 7423244 . A T 1545.56 . AC=3;AF=1.834e-03;AN=1636;BaseQRankSum=4.10;DP=39937;ExcessHet=3.0183;FS=0.000;InbreedingCoeff=0.5018;MLEAC=3;MLEAF=1.834e-03;MQ=60.00;MQRankSum=0.00;QD=10.30;ReadPosRankSum=-9.800e-01;SOR=0.570 GT:AD:DP:GQ:PL 0/0:55,0:55:99:0,120,1800 0/0:51,0:51:99:0,120,1800 0/0:53,0:53:99:0,120,1800 0/0:52,0:52:99:0,120,1800 0/0:56,0:56:99:0,120,1800 0/0:51,0:51:99:0,120,1419 0/0:49,0:49:99:0,120,1800 0/0:49,0:49:99:0,120,1800 0/1:26,21:47:99:456,0,529 0/1:29,25:54:99:571,0,648 0/0:47,0:47:99:0,114,1284 0/0:52,0:52:99:0,120,1800 0/1:25,24:49:99:591,0,589 NW_016690185.1 9770468 . A G 9357.52 . 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AC=121;AF=0.074;AN=1630;BaseQRankSum=4.87;DP=39964;ExcessHet=0.0000;FS=1.289;InbreedingCoeff=0.3136;MLEAC=126;MLEAF=0.077;MQ=60.00;MQRankSum=0.00;QD=23.73;ReadPosRankSum=-6.770e+00;SOR=1.175 GT:AD:DP:GQ:PGT:PID:PL:PS 0|1:27,21:48:99:0|1:574327_C_CCAG:801,0,1071:574327 0/0:49,0:49:99:.:.:0,120,1800:. 0|1:25,23:48:99:0|1:574327_C_CCAG:891,0,981:574327 0|1:25,23:48:99:0|1:574327_C_CCAG:891,0,981:574327 0/0:49,0:49:99:.:.:0,120,1800:. 0/0:47,0:47:99:.:.:0,108,1218:. 0/0:49,0:49:99:.:.:0,120,1278:. 0|1:26,23:49:99:0|1:574327_C_CCAG:888,0,1023:574327 1|1:1,47:48:99:1|1:574327_C_CCAG:2070,99,0:574327 0/0:48,0:48:99:.:.:0,120,1800:. 0/0:50,0:50:99:.:.:0,109,778:. 0|1:26,22:48:99:0|1:574327_C_CCAG:846,0,1026:574327 1|1:0,47:47:99:1|1:574327_C_CCAG:2115,141,0:574327 NW_016690187.1 735457 . T C 6226.9 . 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AC=413;AF=0.254;AN=1628;BaseQRankSum=-5.529e+00;DP=38790;ExcessHet=0.0000;FS=0.000;InbreedingCoeff=0.2716;MLEAC=429;MLEAF=0.264;MQ=59.99;MQRankSum=0.00;QD=15.89;ReadPosRankSum=0.00;SOR=0.193 GT:AD:DP:GQ:PGT:PID:PL:PS 1/1:0,49:49:99:.:.:1286,147,0:. 0/0:49,0:49:99:.:.:0,120,1800:. 0/1:23,27:50:99:.:.:530,0,475:. 0/1:21,26:47:99:.:.:513,0,426:. 0/1:24,25:49:99:.:.:467,0,502:. 0/1:19,29:48:99:.:.:653,0,402:. 0/0:48,0:48:99:.:.:0,110,1257:. 0/0:46,0:46:99:.:.:0,119,1291:. 0/0:45,0:45:99:.:.:0,103,1147:. 0/0:46,0:46:99:.:.:0,120,1800:. 0/0:49,0:49:99:.:.:0,120,1800:. 0/1:17,31:48:99:.:.:629,0,341:. 0/0:47,0:47:99:.:.:0,120,1800:. NW_016690187.1 7839738 . G A 30366.1 . AC=54;AF=0.033;AN=1628;BaseQRankSum=0.979;DP=38640;ExcessHet=0.0000;FS=0.000;InbreedingCoeff=0.4162;MLEAC=56;MLEAF=0.034;MQ=60.00;MQRankSum=0.00;QD=14.24;ReadPosRankSum=0.00;SOR=2.216 GT:AD:DP:GQ:PGT:PID:PL:PS 0/1:22,27:49:99:.:.:610,0,478:. 0/0:48,0:48:99:.:.:0,120,1342:. 0/0:50,0:50:99:.:.:0,116,1082:. 1/1:0,50:50:99:.:.:1385,150,0:. 0/0:50,0:50:99:.:.:0,120,1800:. 0/1:27,22:49:99:.:.:464,0,558:. 0/1:23,27:50:99:.:.:572,0,442:. 0/1:23,27:50:99:.:.:601,0,465:. 0/0:47,0:47:99:.:.:0,120,1800:. 0/0:46,0:46:99:.:.:0,110,1241:. 0/0:48,0:48:99:.:.:0,115,1367:. 0/0:49,0:49:99:.:.:0,120,1358:. 0/0:50,0:50:99:.:.:0,118,1178:. NW_016690187.1 7926982 . T C 80873 . AC=97;AF=0.059;AN=1632;BaseQRankSum=-4.839e+00;DP=41212;ExcessHet=-0.0000;FS=7.213;InbreedingCoeff=0.5877;MLEAC=99;MLEAF=0.061;MQ=59.99;MQRankSum=0.00;QD=23.25;ReadPosRankSum=0.00;SOR=0.002 GT:AD:DP:GQ:PGT:PID:PL:PS 1/1:1,52:53:99:.:.:1218,126,0:. 0/0:47,0:47:99:.:.:0,116,1193:. 0/1:26,29:55:99:.:.:593,0,568:. 1/1:0,97:97:99:.:.:2467,288,0:. 0/0:53,0:53:99:.:.:0,120,1800:. 0/1:32,24:56:99:.:.:445,0,744:. 1/1:0,48:48:99:.:.:1258,144,0:. 0/1:33,21:54:99:.:.:387,0,845:. 1/1:0,51:51:99:.:.:1328,151,0:. 0/1:23,29:52:99:.:.:583,0,489:. 0/0:52,0:52:99:.:.:0,118,1346:. 1/1:0,49:49:99:.:.:1295,146,0:. 1/1:0,50:50:99:.:.:1295,148,0:. NW_016690187.1 9191938 . G A 18944.4 . AC=28;AF=0.017;AN=1630;BaseQRankSum=6.25;DP=40380;ExcessHet=0.0000;FS=12.968;InbreedingCoeff=0.5850;MLEAC=29;MLEAF=0.018;MQ=60.00;MQRankSum=0.00;QD=16.79;ReadPosRankSum=-2.140e-01;SOR=2.320 GT:AD:DP:GQ:PL 0/0:50,0:50:99:0,120,1800 0/1:21,29:50:60:609,0,60 0/1:24,27:51:86:577,0,86 0/0:51,0:51:99:0,120,1800 0/0:50,0:50:99:0,120,1800 0/0:49,0:49:99:0,120,1800 1/1:0,52:52:99:1423,156,0 0/1:20,32:52:44:686,0,44 0/0:51,0:51:99:0,119,1602 0/0:46,0:46:99:0,110,1192 0/0:51,0:51:99:0,119,1639 0/0:52,0:52:99:0,120,1800 0/0:50,0:50:99:0,120,1800 NW_016690187.1 9946645 . A G 20052.1 . 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AC=6;AF=3.695e-03;AN=1624;DP=39663;ExcessHet=0.0000;FS=0.000;InbreedingCoeff=0.6562;MLEAC=6;MLEAF=3.695e-03;MQ=60.00;QD=28.44;SOR=10.035 GT:AD:DP:GQ:PL 0/0:50,0:50:99:0,120,1800 0/0:50,0:50:99:0,120,1800 0/0:49,0:49:99:0,118,1359 0/0:50,0:50:99:0,111,1217 0/0:49,0:49:99:0,120,1800 0/0:48,0:48:99:0,118,1315 0/0:49,0:49:99:0,114,1526 0/0:48,0:48:99:0,117,1402 1/1:0,49:49:99:1402,145,0 0/0:49,0:49:99:0,120,1800 0/0:51,0:51:99:0,120,1800 1/1:0,49:49:99:1453,147,0 1/1:0,52:52:99:1555,156,0 NW_016690188.1 2867569 . T G 2743.67 . 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AC=34;AF=0.021;AN=1632;BaseQRankSum=-5.142e+00;DP=36232;ExcessHet=-0.0000;FS=0.000;InbreedingCoeff=0.6563;MLEAC=35;MLEAF=0.021;MQ=60.00;MQRankSum=0.00;QD=19.30;ReadPosRankSum=0.00;SOR=1.803 GT:AD:DP:GQ:PGT:PID:PL:PS 1/1:1,52:53:99:.:.:1406,114,0:. 0/1:25,20:45:99:.:.:438,0,653:. 0/1:18,29:47:99:.:.:655,0,408:. 1/1:0,49:49:99:.:.:1309,147,0:. 0/1:26,19:45:99:.:.:385,0,662:. 1/1:0,42:42:99:.:.:1202,126,0:. 1/1:0,47:47:99:.:.:1321,141,0:. 1/1:0,48:48:99:.:.:1354,144,0:. 0/0:49,0:49:99:.:.:0,112,1570:. 1/1:0,49:49:99:.:.:1435,146,0:. 1/1:0,46:46:99:.:.:1349,138,0:. 0/1:23,27:50:99:.:.:634,0,569:. 1/1:0,48:48:99:.:.:1370,144,0:. NW_016690188.1 9669917 . T C 2504.29 . AC=4;AF=2.454e-03;AN=1630;BaseQRankSum=-5.602e+00;DP=42844;ExcessHet=3.0263;FS=0.000;InbreedingCoeff=0.5557;MLEAC=4;MLEAF=2.454e-03;MQ=60.00;MQRankSum=0.00;QD=11.93;ReadPosRankSum=-3.130e-01;SOR=0.923 GT:AD:DP:GQ:PL 0/1:25,31:56:99:673,0,590 0/1:28,24:52:99:502,0,689 0/1:25,26:51:99:611,0,631 0/0:50,0:50:99:0,104,1217 0/0:54,0:54:99:0,105,1127 0/0:53,0:53:99:0,120,1800 0/0:50,0:50:99:0,120,1800 0/0:48,0:48:99:0,120,1800 0/0:52,0:52:99:0,120,1800 0/0:52,0:52:99:0,120,1800 0/0:51,0:51:99:0,120,1800 0/0:52,0:52:99:0,120,1800 0/0:49,0:49:99:0,120,1800 NW_016690188.1 10429494 . C T 198758 . AC=207;AF=0.127;AN=1630;BaseQRankSum=6.20;DP=39890;ExcessHet=0.0000;FS=0.000;InbreedingCoeff=0.2585;MLEAC=214;MLEAF=0.131;MQ=60.00;MQRankSum=0.00;QD=23.50;ReadPosRankSum=0.00;SOR=1.171 GT:AD:DP:GQ:PGT:PID:PL:PS 1|1:0,50:50:99:1|1:10429491_A_T:2247,151,0:10429491 0|1:26,22:48:99:0|1:10429491_A_T:547,0,618:10429491 0|1:28,20:48:99:0|1:10429491_A_T:484,0,687:10429491 0|1:25,24:49:99:0|1:10429491_A_T:613,0,587:10429491 1|1:0,49:49:99:1|1:10429491_A_T:2205,147,0:10429491 1|1:0,50:50:99:1|1:10429491_A_T:2250,151,0:10429491 0|1:26,24:50:99:0|1:10429491_A_T:608,0,632:10429491 0|1:24,24:48:99:0|1:10429491_A_T:606,0,539:10429491 0/0:47,0:47:99:.:.:0,120,1800:. 0/1:29,21:50:99:.:.:515,0,710:. 1|1:0,50:50:99:1|1:10429491_A_T:2250,151,0:10429491 0/0:49,0:49:99:.:.:0,120,1800:. 0/0:49,0:49:99:.:.:0,120,1800:. NW_016690188.1 10528140 . A G 284925 . 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AC=20;AF=0.012;AN=1636;BaseQRankSum=-5.812e+00;DP=39005;ExcessHet=0.0000;FS=0.000;InbreedingCoeff=0.6022;MLEAC=21;MLEAF=0.013;MQ=60.00;MQRankSum=0.00;QD=18.07;ReadPosRankSum=0.00;SOR=1.866 GT:AD:DP:GQ:PL 0/0:50,0:50:99:0,120,1800 1/1:0,49:49:99:1396,147,0 0/1:23,25:48:99:586,0,538 0/0:49,0:49:99:0,111,1325 0/0:48,0:48:99:0,120,1800 0/1:25,23:48:99:537,0,648 0/0:49,0:49:99:0,120,1800 1/1:1,49:50:99:1392,117,0 0/1:26,24:50:99:557,0,690 0/0:49,0:49:99:0,120,1800 1/1:1,49:50:99:1419,124,0 0/1:26,24:50:99:558,0,698 1/1:0,49:49:99:1430,147,0 NW_016690189.1 1083041 . G A 2244.63 . AC=4;AF=2.472e-03;AN=1618;BaseQRankSum=2.46;DP=39140;ExcessHet=0.0081;FS=0.000;InbreedingCoeff=0.6004;MLEAC=4;MLEAF=2.472e-03;MQ=60.00;MQRankSum=0.00;QD=15.27;ReadPosRankSum=0.00;SOR=1.242 GT:AD:DP:GQ:PL 0/1:28,21:49:99:478,0,666 0/0:50,0:50:99:0,120,1800 0/0:50,0:50:99:0,120,1800 1/1:0,48:48:99:1425,144,0 0/0:48,0:48:99:0,114,1255 0/0:50,0:50:99:0,120,1800 0/0:50,0:50:99:0,120,1800 0/0:50,0:50:99:0,120,1800 0/0:49,0:49:99:0,120,1800 0/0:46,0:46:99:0,120,1800 0/0:49,0:49:99:0,116,990 0/0:49,0:49:99:0,120,1800 0/0:49,0:49:99:0,120,1800 NW_016690189.1 1634169 . A G 1909.96 . 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AC=13;AF=7.975e-03;AN=1630;BaseQRankSum=-9.280e-01;DP=41241;ExcessHet=0.0000;FS=0.000;InbreedingCoeff=0.5840;MLEAC=13;MLEAF=7.975e-03;MQ=60.00;MQRankSum=0.00;QD=25.03;ReadPosRankSum=0.00;SOR=1.293 GT:AD:DP:GQ:PGT:PID:PL:PS 1/1:0,51:52:99:.:.:2308,156,0:. 0/0:52,0:52:99:.:.:0,112,1386:. 0|1:32,22:54:99:0|1:2265103_T_A:811,0,1261:2265103 0/0:50,0:50:99:.:.:0,118,1418:. 1|1:0,46:46:99:1|1:2265103_T_G:2062,138,0:2265103 0/0:56,0:56:99:.:.:0,111,1470:. 0/0:103,0:103:99:.:.:0,120,1800:. 0|1:29,21:50:99:0|1:2265103_T_G:794,0,1123:2265103 0|1:21,27:48:99:0|1:2265103_T_G:1040,0,801:2265103 0/0:49,0:49:99:.:.:0,119,1225:. 0/0:49,0:49:99:.:.:0,120,1800:. 0|1:27,26:53:99:0|1:2265103_T_G:993,0,1000:2265103 0/0:50,0:50:99:.:.:0,119,1562:. NW_016690189.1 4078114 . C T 188424 . AC=207;AF=0.127;AN=1624;BaseQRankSum=1.09;DP=50768;ExcessHet=0.0033;FS=0.000;InbreedingCoeff=0.1675;MLEAC=216;MLEAF=0.133;MQ=60.00;MQRankSum=0.00;QD=14.38;ReadPosRankSum=0.013;SOR=1.078 GT:AD:DP:GQ:PL 0/0:48,0:48:99:0,120,1800 0/0:47,0:47:99:0,103,1287 0/0:49,0:49:99:0,105,1265 0/0:48,0:48:99:0,112,1371 0/1:22,41:63:99:1039,0,417 1/1:1,62:63:99:1895,160,0 0/1:29,36:65:99:851,0,625 0/0:46,0:46:99:0,116,1560 0/0:50,0:50:99:0,120,1238 0/0:68,0:68:99:0,120,1800 0/0:71,0:71:99:0,120,1800 0/0:72,0:72:99:0,120,1800 0/0:49,0:49:99:0,120,1800 NW_016690189.1 4265906 . C T 2701.33 . AC=5;AF=3.071e-03;AN=1628;BaseQRankSum=5.41;DP=38370;ExcessHet=0.0134;FS=0.000;InbreedingCoeff=0.5782;MLEAC=5;MLEAF=3.071e-03;MQ=60.00;MQRankSum=0.00;QD=13.18;ReadPosRankSum=0.00;SOR=0.784 GT:AD:DP:GQ:PL 0/0:66,0:66:99:0,120,1800 0/0:60,0:60:99:0,120,1800 0/0:48,0:48:99:0,120,1800 0/0:58,0:58:99:0,120,1800 0/0:96,0:96:99:0,120,1800 0/0:36,0:36:99:0,107,784 0/0:51,0:51:99:0,114,1168 0/0:40,0:40:99:0,119,867 1/1:0,35:35:99:1049,105,0 0/0:81,0:81:99:0,120,1800 0/0:56,0:56:99:0,120,1800 0/0:71,0:71:99:0,120,1800 0/1:37,28:65:99:632,0,861 NW_016690189.1 4439938 . A G 4788.19 . AC=10;AF=6.369e-03;AN=1570;BaseQRankSum=-4.343e+00;DP=21248;ExcessHet=0.0000;FS=0.000;InbreedingCoeff=0.5809;MLEAC=11;MLEAF=7.006e-03;MQ=60.00;MQRankSum=0.00;QD=19.87;ReadPosRankSum=0.00;SOR=3.230 GT:AD:DP:GQ:PL 0/1:29,18:47:99:351,0,712 0/0:49,0:49:99:0,120,1416 0/0:35,0:35:99:0,105,998 0/0:49,0:49:99:0,115,1468 0/0:50,0:50:99:0,120,1800 0/0:49,0:49:99:0,120,1800 0/0:49,0:49:99:0,120,1800 1/1:0,16:16:48:428,48,0 0/0:37,0:37:99:0,99,823 1/1:0,47:47:99:1245,141,0 0/1:11,21:32:99:413,0,216 0/0:48,0:48:99:0,113,1314 0/0:50,0:50:99:0,120,1800 NW_016690189.1 4919489 . C G 3469.87 . AC=5;AF=3.053e-03;AN=1638;BaseQRankSum=6.28;DP=39849;ExcessHet=0.0133;FS=2.513;InbreedingCoeff=0.5885;MLEAC=5;MLEAF=3.053e-03;MQ=60.00;MQRankSum=0.00;QD=17.98;ReadPosRankSum=0.00;SOR=1.917 GT:AD:DP:GQ:PGT:PID:PL:PS 0/0:52,0:52:99:.:.:0,120,1800:. 0/1:20,30:50:51:.:.:555,0,51:. 1|1:0,50:50:99:1|1:4919489_C_G:2205,150,0:4919489 0/0:49,0:49:99:.:.:0,120,1800:. 0/0:50,0:50:99:.:.:0,120,1800:. 0/0:51,0:51:99:.:.:0,104,1280:. 0/0:46,0:46:99:.:.:0,120,1800:. 0/0:48,0:48:99:.:.:0,120,1800:. 0/0:52,0:52:99:.:.:0,120,1800:. 0/0:50,0:50:99:.:.:0,120,1800:. 0/0:51,0:51:99:.:.:0,120,1800:. 0/0:53,0:53:99:.:.:0,120,1800:. 0/0:50,0:50:99:.:.:0,120,1800:. NW_016690189.1 6441779 . A G 11886.9 . 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AC=6;AF=3.764e-03;AN=1594;BaseQRankSum=4.93;DP=38266;ExcessHet=3.0514;FS=0.000;InbreedingCoeff=0.5280;MLEAC=6;MLEAF=3.764e-03;MQ=60.00;MQRankSum=0.00;QD=11.14;ReadPosRankSum=0.639;SOR=0.660 GT:AD:DP:GQ:PL 0/0:49,0:49:99:0,120,1800 0/1:24,26:50:99:620,0,543 0/0:49,0:49:99:0,120,1800 0/0:50,0:50:99:0,120,1800 0/1:23,27:50:99:627,0,486 0/1:23,25:48:99:575,0,529 0/0:49,0:49:99:0,115,1325 0/0:47,0:47:99:0,120,1800 0/0:50,0:50:99:0,120,1800 0/0:49,0:49:99:0,119,1442 0/0:49,0:49:99:0,120,1800 0/0:50,0:50:99:0,115,1276 0/0:49,0:49:99:0,120,1800 NW_016690189.1 7240926 . T C 1.07208e+06 . AC=1433;AF=0.892;AN=1606;BaseQRankSum=-5.788e+00;DP=39809;ExcessHet=0.0000;FS=0.000;InbreedingCoeff=0.5205;MLEAC=1510;MLEAF=0.940;MQ=59.99;MQRankSum=0.00;QD=28.67;ReadPosRankSum=0.00;SOR=3.396 GT:AD:DP:GQ:PGT:PID:PL:PS 0/1:21,37:58:99:.:.:908,0,481:. 0/0:50,0:50:99:.:.:0,109,1199:. 0/1:21,27:48:99:.:.:649,0,506:. 0/1:28,19:47:99:.:.:394,0,740:. 0/0:49,0:49:99:.:.:0,106,763:. 1/1:0,49:49:99:.:.:1384,147,0:. 0/0:49,0:49:99:.:.:0,116,1305:. 1/1:0,49:49:99:.:.:1384,147,0:. 1/1:0,51:51:99:.:.:1485,153,0:. 0/1:22,32:54:99:.:.:786,0,526:. 1/1:0,53:53:99:.:.:1508,159,0:. 0/1:20,30:50:99:.:.:711,0,481:. 0/1:24,27:51:99:.:.:640,0,599:. NW_016690189.1 8994553 . C T 59340.1 . 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AC=8;AF=4.944e-03;AN=1618;BaseQRankSum=4.86;DP=40899;ExcessHet=0.0378;FS=0.000;InbreedingCoeff=0.5326;MLEAC=8;MLEAF=4.944e-03;MQ=59.94;MQRankSum=0.00;QD=15.96;ReadPosRankSum=0.00;SOR=1.251 GT:AD:DP:GQ:PL 0/0:49,0:49:99:0,120,1800 0/0:48,0:48:99:0,116,1057 0/0:49,0:49:99:0,120,1461 0/0:47,0:47:99:0,116,1401 0/0:54,0:54:99:0,120,1800 0/0:101,0:101:99:0,120,1800 0/0:51,0:51:99:0,120,1800 0/0:49,0:49:99:0,120,1800 0/1:24,28:52:99:651,0,506 0/0:62,0:62:99:0,120,1800 0/0:59,0:59:99:0,120,1800 0/1:21,33:54:99:839,0,434 0/1:22,28:50:99:666,0,461 NW_016690190.1 4954386 . A T 48513.6 . AC=78;AF=0.048;AN=1636;BaseQRankSum=-6.224e+00;DP=39444;ExcessHet=0.0000;FS=0.000;InbreedingCoeff=0.3662;MLEAC=81;MLEAF=0.050;MQ=60.00;MQRankSum=0.00;QD=15.21;ReadPosRankSum=0.00;SOR=1.103 GT:AD:DP:GQ:PGT:PID:PL:PS 1/1:0,50:50:99:.:.:1367,150,0:. 1/1:0,49:49:99:.:.:1317,146,0:. 1/1:0,47:47:99:.:.:1329,141,0:. 0/1:33,17:50:99:.:.:339,0,867:. 0/0:48,0:48:99:.:.:0,113,1247:. 0/0:51,0:51:99:.:.:0,120,1800:. 0/1:29,18:47:99:.:.:358,0,757:. 0/0:47,0:47:99:.:.:0,120,1800:. 0/0:48,0:48:99:.:.:0,112,1232:. 0/0:49,0:49:99:.:.:0,117,1305:. 0/1:21,26:47:99:.:.:534,0,484:. 0/1:23,27:50:99:.:.:562,0,558:. 1/1:0,49:49:99:.:.:1293,147,0:. NW_016690190.1 5508731 . T C 430897 . AC=863;AF=0.536;AN=1610;BaseQRankSum=-2.620e-01;DP=39773;ExcessHet=0.0003;FS=3.019;InbreedingCoeff=0.1400;MLEAC=904;MLEAF=0.561;MQ=60.00;MQRankSum=0.00;QD=14.55;ReadPosRankSum=0.00;SOR=1.724 GT:AD:DP:GQ:PGT:PID:PL:PS 0/1:21,26:47:99:.:.:408,0,159:. 1/1:0,48:48:99:.:.:1101,143,0:. 1/1:0,50:50:99:.:.:1124,149,0:. 1/1:0,49:49:99:.:.:1114,145,0:. 1/1:0,49:49:99:.:.:1107,145,0:. 0/1:24,24:48:99:.:.:252,0,880:. 1/1:0,47:47:99:.:.:447,120,0:. 1/1:0,48:48:99:.:.:997,140,0:. 1/1:0,49:49:99:.:.:1096,146,0:. 0/1:31,21:52:99:.:.:172,0,606:. 0/0:48,0:48:99:.:.:0,114,1166:. 0/1:29,24:53:99:.:.:386,0,633:. 1/1:0,50:50:99:.:.:1110,148,0:. NW_016690190.1 6113037 . A C 719370 . AC=688;AF=0.429;AN=1604;BaseQRankSum=0.209;DP=59368;ExcessHet=0.0073;FS=0.000;InbreedingCoeff=0.1097;MLEAC=727;MLEAF=0.453;MQ=60.00;MQRankSum=0.00;QD=15.64;ReadPosRankSum=1.40;SOR=0.715 GT:AD:DP:GQ:PGT:PID:PL:PS 0/1:41,60:101:99:.:.:1302,0,818:. 0/1:49,50:99:99:.:.:1041,0,1033:. 0/0:48,0:48:99:.:.:0,115,1384:. 0/1:69,35:104:99:.:.:636,0,1508:. 0/1:49,51:100:99:.:.:1031,0,973:. 0/0:50,0:50:99:.:.:0,106,1361:. 1/1:0,98:98:99:.:.:2493,293,0:. 0/1:63,35:98:99:.:.:576,0,1219:. 0/0:47,0:47:99:.:.:0,120,1800:. 0/0:49,0:49:99:.:.:0,120,1800:. 1/1:0,95:95:99:.:.:2480,285,0:. 0/1:54,40:94:99:.:.:792,0,1106:. 0/0:49,0:49:99:.:.:0,120,1800:. NW_016690190.1 7009366 . A G 2254.33 . 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AC=247;AF=0.152;AN=1624;BaseQRankSum=-1.318e+00;DP=38344;ExcessHet=0.0000;FS=0.000;InbreedingCoeff=0.3188;MLEAC=257;MLEAF=0.158;MQ=60.00;MQRankSum=0.00;QD=24.60;ReadPosRankSum=0.00;SOR=1.899 GT:AD:DP:GQ:PGT:PID:PL:PS 1|1:0,50:50:99:1|1:2335154_A_G:2203,150,0:2335154 0|1:25,25:50:99:0|1:2335154_A_G:956,0,944:2335154 0|1:25,23:48:99:0|1:2335154_A_G:878,0,977:2335154 0/0:49,0:49:99:.:.:0,120,1800:. 0/0:47,0:47:99:.:.:0,120,1800:. 0|1:27,19:46:99:0|1:2335154_A_G:717,0,1057:2335154 1|1:0,50:50:99:1|1:2335154_A_G:2222,151,0:2335154 0|1:25,25:50:99:0|1:2335154_A_G:891,0,964:2335154 1|1:0,51:51:99:1|1:2335154_A_G:2272,154,0:2335154 0|1:19,32:51:99:0|1:2335154_A_G:1272,0,700:2335154 0/0:47,0:47:99:.:.:0,120,1800:. 1|1:0,49:49:99:1|1:2335154_A_G:2117,147,0:2335154 1|1:0,50:50:99:1|1:2335154_A_G:2218,151,0:2335154 NW_016690192.1 3648261 . T A 5491.7 . AC=10;AF=6.135e-03;AN=1630;BaseQRankSum=6.61;DP=39746;ExcessHet=0.0604;FS=0.000;InbreedingCoeff=0.5089;MLEAC=10;MLEAF=6.135e-03;MQ=60.00;MQRankSum=0.00;QD=11.12;ReadPosRankSum=0.00;SOR=0.579 GT:AD:DP:GQ:PGT:PID:PL:PS 0|1:34,15:49:99:0|1:3648237_A_G:436,0,769:3648237 0/0:51,0:51:99:.:.:0,120,1800:. 0/0:50,0:50:99:.:.:0,107,1356:. 0/0:50,0:50:99:.:.:0,120,1800:. 0/0:50,0:50:99:.:.:0,120,1800:. 1/1:0,49:49:99:.:.:1461,147,0:. 0/1:26,23:49:99:.:.:514,0,566:. 0/0:50,0:50:99:.:.:0,120,1800:. 0/0:50,0:50:99:.:.:0,120,1800:. 0/1:34,17:51:99:.:.:387,0,831:. 0/1:28,24:52:99:.:.:580,0,644:. 0/0:49,0:49:99:.:.:0,120,1800:. 0/0:49,0:49:99:.:.:0,120,1800:. NW_016690192.1 3906118 . A G 4424.54 . 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AC=46;AF=0.029;AN=1606;BaseQRankSum=-5.857e+00;DP=39531;ExcessHet=0.0000;FS=5.541;InbreedingCoeff=0.6024;MLEAC=48;MLEAF=0.030;MQ=60.00;MQRankSum=0.00;QD=17.79;ReadPosRankSum=0.00;SOR=3.483 GT:AD:DP:GQ:PL 0/1:22,28:50:99:605,0,500 0/1:27,22:49:99:418,0,558 1/1:1,49:50:99:1277,121,0 0/1:20,31:51:99:672,0,422 1/1:0,52:52:99:1351,155,0 1/1:0,50:50:99:1331,149,0 1/1:0,50:50:99:1379,150,0 1/1:0,49:49:99:1317,146,0 1/1:0,50:50:99:1375,149,0 1/1:0,52:52:99:1417,156,0 1/1:0,52:52:99:1463,156,0 1/1:0,52:52:99:1445,155,0 1/1:0,51:51:99:1405,153,0 NW_016690192.1 8488145 . G A 8636.62 . AC=13;AF=7.975e-03;AN=1630;BaseQRankSum=6.54;DP=38105;ExcessHet=0.0000;FS=0.000;InbreedingCoeff=0.5764;MLEAC=13;MLEAF=7.975e-03;MQ=59.95;MQRankSum=0.00;QD=17.73;ReadPosRankSum=0.00;SOR=1.481 GT:AD:DP:GQ:PGT:PID:PL:PS 0/0:50,0:50:84:.:.:0,84,768:. 0/0:48,0:48:99:.:.:0,117,1300:. 0/0:48,0:48:99:.:.:0,115,1482:. 0/0:47,0:47:99:.:.:0,111,1218:. 0/1:27,21:48:99:.:.:451,0,125:. 0/0:48,0:48:99:.:.:0,112,1001:. 0/0:45,0:45:99:.:.:0,120,1800:. 0/0:47,0:47:99:.:.:0,113,1200:. 0/0:50,0:50:99:.:.:0,115,1207:. 0/0:49,0:49:99:.:.:0,119,1430:. 0/0:48,0:48:99:.:.:0,104,690:. 1/1:0,48:48:99:.:.:1302,144,0:. 0/0:48,0:48:99:.:.:0,107,1114:. NW_016690194.1 773394 . C T 18715.8 . 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AC=10;AF=6.527e-03;AN=1532;BaseQRankSum=-6.403e+00;DP=26209;ExcessHet=0.0000;FS=0.000;InbreedingCoeff=0.6138;MLEAC=11;MLEAF=7.180e-03;MQ=60.00;MQRankSum=0.00;QD=22.37;ReadPosRankSum=0.982;SOR=3.450 GT:AD:DP:GQ:PL 0/1:24,27:51:99:643,0,633 1/1:0,44:44:99:1214,132,0 0/0:50,0:50:99:0,120,1800 0/0:66,0:66:99:0,120,1800 0/0:49,0:49:99:0,120,1800 0/0:49,0:49:99:0,118,1124 0/0:44,0:44:99:0,106,1190 0/0:28,0:28:82:0,82,476 0/0:45,0:45:99:0,120,1800 0/0:49,0:49:99:0,120,1800 0/0:37,0:37:99:0,102,723 0/0:48,0:48:99:0,119,1228 0/0:49,0:49:99:0,120,1800 NW_016690194.1 2488383 . T G 70347.1 . AC=79;AF=0.049;AN=1614;BaseQRankSum=-3.091e+00;DP=36724;ExcessHet=0.0000;FS=0.000;InbreedingCoeff=0.7201;MLEAC=74;MLEAF=0.046;MQ=59.99;MQRankSum=0.00;QD=32.98;ReadPosRankSum=0.00;SOR=3.081 GT:AD:DP:GQ:PGT:PID:PL:PS 0/0:50,0:50:99:.:.:0,103,1167:. 0/0:48,0:48:99:.:.:0,120,1800:. 0/0:47,0:47:99:.:.:0,115,1303:. 0/0:50,0:50:99:.:.:0,120,1800:. 0/0:48,0:48:99:.:.:0,119,1487:. 0/0:52,0:52:99:.:.:0,120,1800:. 0/0:51,0:51:99:.:.:0,120,1800:. 1|1:0,54:54:99:1|1:2488337_C_A:2430,163,0:2488337 0/0:49,0:49:99:.:.:0,120,1800:. 0|1:21,28:49:99:0|1:2488337_C_A:624,0,452:2488337 0/0:49,0:49:99:.:.:0,106,1544:. 0/0:50,0:50:99:.:.:0,119,739:. 0/0:48,0:48:99:.:.:0,120,1800:. NW_016690194.1 3748469 . A C 6817.56 . 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AC=31;AF=0.019;AN=1628;BaseQRankSum=-6.424e+00;DP=38554;ExcessHet=0.0000;FS=0.000;InbreedingCoeff=0.7448;MLEAC=32;MLEAF=0.020;MQ=60.00;MQRankSum=0.00;QD=16.37;ReadPosRankSum=0.00;SOR=4.538 GT:AD:DP:GQ:PL 1/1:0,48:48:99:1096,143,0 1/1:0,49:49:99:1099,146,0 1/1:0,50:50:99:1135,149,0 1/1:0,48:48:99:1091,143,0 1/1:0,50:50:99:1140,149,0 0/1:26,24:50:99:419,0,594 0/1:27,23:50:99:396,0,632 1/1:1,49:50:99:1086,123,0 0/0:49,0:49:99:0,120,1800 1/1:0,44:44:99:1030,131,0 0/1:23,27:50:99:438,0,498 0/0:49,0:49:99:0,120,1800 0/0:50,0:50:99:0,119,686 NW_016690194.1 8374019 . G A 2777.2 . AC=4;AF=2.448e-03;AN=1634;BaseQRankSum=4.89;DP=39010;ExcessHet=0.0080;FS=0.000;InbreedingCoeff=0.6087;MLEAC=4;MLEAF=2.448e-03;MQ=60.00;MQRankSum=0.00;QD=18.39;ReadPosRankSum=0.00;SOR=1.609 GT:AD:DP:GQ:PL 0/0:51,0:51:99:0,119,1481 1/1:0,51:51:99:1602,153,0 0/1:30,20:50:99:450,0,740 0/0:47,0:47:99:0,120,1800 0/0:49,0:49:99:0,120,1800 0/1:20,30:50:99:823,0,461 0/0:49,0:49:99:0,103,1338 0/0:49,0:49:99:0,120,1800 0/0:48,0:48:99:0,120,1800 0/0:49,0:49:99:0,120,1800 0/0:50,0:50:99:0,120,1800 0/0:50,0:50:99:0,120,1800 0/0:49,0:49:99:0,108,1436 NW_016690194.1 8641489 . G T 15513.7 . AC=21;AF=0.013;AN=1600;BaseQRankSum=6.67;DP=37607;ExcessHet=0.0000;FS=0.000;InbreedingCoeff=0.6236;MLEAC=22;MLEAF=0.014;MQ=60.00;MQRankSum=0.00;QD=23.54;ReadPosRankSum=-1.380e-01;SOR=2.837 GT:AD:DP:GQ:PL 1/1:0,55:55:99:1692,164,0 1/1:0,50:50:99:1576,150,0 0/1:31,19:50:99:449,0,643 0/1:23,28:51:99:734,0,460 0/1:28,23:51:99:596,0,619 0/1:26,23:49:99:584,0,556 0/0:51,0:51:99:0,120,1800 0/0:49,0:49:99:0,120,1800 0/0:51,0:51:99:0,119,1498 0/0:51,0:51:99:0,120,1800 0/0:52,0:52:99:0,120,1800 0/0:50,0:50:99:0,119,1567 0/0:50,0:50:99:0,120,1800 NW_016690194.1 10106407 . C G 4299.86 . AC=4;AF=2.491e-03;AN=1606;BaseQRankSum=1.17;DP=59373;ExcessHet=0.0081;FS=4.652;InbreedingCoeff=0.6048;MLEAC=4;MLEAF=2.491e-03;MQ=59.92;MQRankSum=0.00;QD=14.53;ReadPosRankSum=-9.090e-01;SOR=0.658 GT:AD:DP:GQ:PL 0/0:101,0:101:99:0,120,1800 0/0:101,0:101:99:0,120,1800 0/0:100,0:100:99:0,120,1800 0/0:101,0:101:99:0,120,1800 0/0:102,0:102:99:0,120,1800 0/0:101,0:101:99:0,120,1800 0/0:97,0:97:99:0,120,1800 0/1:66,36:102:99:677,0,1455 0/0:100,0:100:99:0,120,1800 1/1:1,96:98:99:2738,266,0 0/1:50,47:97:99:982,0,1068 0/0:97,0:97:99:0,120,1800 0/0:101,0:101:99:0,120,1800 NW_016690191.1 183953 . C T 46246.7 . AC=79;AF=0.049;AN=1624;BaseQRankSum=6.22;DP=38375;ExcessHet=0.0000;FS=0.000;InbreedingCoeff=0.3232;MLEAC=82;MLEAF=0.050;MQ=60.00;MQRankSum=0.00;QD=14.15;ReadPosRankSum=0.00;SOR=1.708 GT:AD:DP:GQ:PGT:PID:PL:PS 0/1:23,25:48:99:.:.:648,0,507:. 0/0:48,0:48:99:.:.:0,112,1271:. 0/0:48,0:48:99:.:.:0,117,785:. 0/1:26,21:47:99:.:.:484,0,553:. 0/1:26,22:48:99:.:.:511,0,551:. 0/1:27,22:49:99:.:.:527,0,599:. 0/1:33,16:49:99:.:.:329,0,712:. 0/1:32,18:50:99:.:.:397,0,729:. 0/0:49,0:49:99:.:.:0,120,1800:. 0/1:26,24:50:99:.:.:612,0,611:. 0/1:27,23:50:99:.:.:552,0,617:. 0/0:48,0:48:99:.:.:0,118,1266:. 0/0:49,0:49:99:.:.:0,120,1551:. NW_016690191.1 1326523 . T C 273018 . AC=423;AF=0.260;AN=1624;BaseQRankSum=-6.096e+00;DP=39526;ExcessHet=0.0000;FS=0.000;InbreedingCoeff=0.2463;MLEAC=440;MLEAF=0.271;MQ=60.00;MQRankSum=0.00;QD=16.63;ReadPosRankSum=0.00;SOR=1.252 GT:AD:DP:GQ:PGT:PID:PL:PS 0/0:49,0:49:99:.:.:0,119,1462:. 1/1:0,49:49:99:.:.:1280,147,0:. 0/0:49,0:49:99:.:.:0,120,1800:. 0/1:22,27:49:99:.:.:548,0,467:. 0/0:50,0:50:99:.:.:0,120,1800:. 0/0:48,0:48:99:.:.:0,119,1456:. 0/1:21,29:50:99:.:.:589,0,434:. 0/1:23,26:49:99:.:.:505,0,491:. 0|1:22,28:50:99:0|1:1326523_T_C:1098,0,832:1326523 1/1:0,51:51:99:.:.:1295,152,0:. 0/1:22,28:50:99:.:.:564,0,831:. 0/1:22,28:50:99:.:.:538,0,444:. 0/1:26,24:50:99:.:.:429,0,544:. NW_016690191.1 4283433 . G A 1.48024e+06 . AC=1442;AF=0.898;AN=1606;BaseQRankSum=4.99;DP=37795;ExcessHet=0.0004;FS=0.000;InbreedingCoeff=0.2268;MLEAC=1512;MLEAF=0.941;MQ=60.00;MQRankSum=0.00;QD=26.82;ReadPosRankSum=0.00;SOR=0.001 GT:AD:DP:GQ:PGT:PID:PL:PS 1|1:0,48:48:99:1|1:4283428_T_G:2145,144,0:4283428 1|1:0,48:48:99:1|1:4283428_T_G:2154,144,0:4283428 1|1:0,48:48:99:1|1:4283428_T_G:2153,144,0:4283428 1|1:0,44:44:99:1|1:4283428_T_G:1958,132,0:4283428 1|1:0,44:44:99:1|1:4283428_T_G:1967,132,0:4283428 1|1:0,43:43:99:1|1:4283428_T_G:1931,129,0:4283428 1|1:0,48:48:99:1|1:4283428_T_G:2116,144,0:4283428 1|1:0,45:45:99:1|1:4283428_T_G:1995,135,0:4283428 1|1:1,44:45:90:1|1:4283428_T_G:1913,90,0:4283428 0/1:23,23:46:99:.:.:536,0,434:. 1|1:0,48:48:99:1|1:4283428_T_G:2136,144,0:4283428 0/1:24,22:46:99:.:.:517,0,520:. 0/0:48,0:48:99:.:.:0,104,1186:. NW_016690191.1 4447953 . T C 1332.72 . AC=3;AF=1.850e-03;AN=1622;BaseQRankSum=-5.521e+00;DP=36945;ExcessHet=3.0183;FS=0.000;InbreedingCoeff=0.5458;MLEAC=3;MLEAF=1.850e-03;MQ=60.00;MQRankSum=0.00;QD=9.66;ReadPosRankSum=0.00;SOR=0.752 GT:AD:DP:GQ:PL 0/0:48,0:48:99:0,120,1800 0/0:49,0:49:99:0,120,1800 0/0:50,0:50:99:0,110,1121 0/0:40,0:40:99:0,120,1142 0/0:50,0:50:99:0,109,1254 0/0:44,0:44:99:0,101,1264 0/0:44,0:44:99:0,107,1086 0/0:46,0:46:99:0,120,1800 0/0:47,0:47:99:0,102,1084 0/0:49,0:49:99:0,108,1244 0/1:27,21:48:99:356,0,563 0/1:18,28:46:99:610,0,378 0/1:22,22:44:99:439,0,470 NW_016690191.1 5243776 . G A 152478 . 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AC=144;AF=0.089;AN=1624;BaseQRankSum=-5.505e+00;DP=39551;ExcessHet=0.0006;FS=9.121;InbreedingCoeff=0.2073;MLEAC=151;MLEAF=0.093;MQ=60.00;MQRankSum=0.00;QD=18.70;ReadPosRankSum=0.00;SOR=3.131 GT:AD:DP:GQ:PGT:PID:PL:PS 1|1:3,50:53:25:1|1:5892003_A_G:2115,25,0:5892003 1|1:0,47:47:99:1|1:5892003_A_G:2115,141,0:5892003 0/0:48,0:48:99:.:.:0,120,1800:. 0/0:46,0:46:99:.:.:0,115,1203:. 1|1:0,45:45:99:1|1:5892003_A_G:2025,135,0:5892003 0|1:45,6:51:99:0|1:5892003_A_G:116,0,1871:5892003 0/0:49,0:49:99:.:.:0,112,1338:. 0/0:50,0:50:99:.:.:0,120,1389:. 1|1:1,47:48:99:1|1:5892003_A_G:2070,99,0:5892003 0/0:48,0:48:99:.:.:0,116,1493:. 0|1:36,13:49:99:0|1:5892003_A_G:438,0,1441:5892003 0|1:26,25:51:99:0|1:5892003_A_G:971,0,1016:5892003 1|1:0,48:48:99:1|1:5892003_A_G:2144,144,0:5892003 NW_016690191.1 6039122 . G T 824534 . AC=1081;AF=0.665;AN=1626;BaseQRankSum=4.29;DP=38891;ExcessHet=0.0000;FS=0.000;InbreedingCoeff=0.2575;MLEAC=1123;MLEAF=0.691;MQ=60.00;MQRankSum=0.00;QD=25.49;ReadPosRankSum=0.00;SOR=0.604 GT:AD:DP:GQ:PGT:PID:PL:PS 1|1:1,49:51:99:1|1:6039096_G_T:2160,106,0:6039096 0/1:20,27:48:99:.:.:631,0,413:. 0/1:26,21:47:99:.:.:460,0,562:. 1|1:0,48:48:99:1|1:6039098_C_T:2146,144,0:6039098 1|1:0,48:48:99:1|1:6039098_C_T:2160,144,0:6039098 0/1:24,25:49:99:.:.:589,0,538:. 1|1:0,50:50:99:1|1:6039098_C_T:2250,151,0:6039098 1/1:0,50:50:99:.:.:1438,149,0:. 1/1:0,50:50:99:.:.:1516,150,0:. 1/1:0,50:50:99:.:.:1467,150,0:. 1|1:0,48:48:99:1|1:6039098_C_T:2134,144,0:6039098 1|1:0,47:47:99:1|1:6039098_C_T:2099,141,0:6039098 1|1:0,48:48:99:1|1:6039096_G_T:2158,144,0:6039096 NW_016690191.1 7520607 . G T 5160.91 . AC=8;AF=4.902e-03;AN=1632;BaseQRankSum=6.44;DP=40169;ExcessHet=3.0852;FS=0.000;InbreedingCoeff=0.4526;MLEAC=8;MLEAF=4.902e-03;MQ=60.00;MQRankSum=0.00;QD=11.42;ReadPosRankSum=0.00;SOR=0.702 GT:AD:DP:GQ:PL 0/0:54,0:54:99:0,120,1800 0/0:54,0:54:99:0,104,1507 0/0:56,0:56:99:0,102,1658 0/0:50,0:50:99:0,120,1800 0/0:49,0:49:99:0,120,1800 0/0:49,0:49:99:0,120,1800 0/1:24,26:50:99:616,0,141 0/1:27,25:52:99:578,0,434 0/0:51,0:51:99:0,120,1800 0/1:22,29:51:99:708,0,119 0/0:48,0:48:99:0,102,1225 0/0:50,0:50:99:0,120,1800 0/0:50,0:50:99:0,104,1283 NW_016690191.1 8985597 . G C 2634.24 . AC=5;AF=3.075e-03;AN=1626;BaseQRankSum=0.767;DP=39349;ExcessHet=0.0134;FS=0.000;InbreedingCoeff=0.6125;MLEAC=5;MLEAF=3.075e-03;MQ=60.00;MQRankSum=0.00;QD=13.37;ReadPosRankSum=0.00;SOR=0.927 GT:AD:DP:GQ:PGT:PID:PL:PS 0/0:49,0:49:99:.:.:0,120,1800:. 0/0:50,0:50:99:.:.:0,120,1800:. 0/0:50,0:50:99:.:.:0,115,1261:. 0/0:48,0:48:99:.:.:0,118,1302:. 0/0:49,0:49:99:.:.:0,120,1800:. 0/0:49,0:49:99:.:.:0,120,1800:. 0/0:50,0:50:99:.:.:0,120,1800:. 0/0:50,0:50:99:.:.:0,120,1800:. 1/1:0,48:48:99:.:.:1417,144,0:. 0/0:50,0:50:99:.:.:0,120,1800:. 0|1:27,22:49:99:1|0:8985590_T_C:485,0,1058:8985590 0/1:27,23:50:99:.:.:527,0,601:. 0/1:34,16:50:99:.:.:321,0,831:. NW_016690193.1 999484 . C T 102013 . 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AC=12;AF=7.371e-03;AN=1628;BaseQRankSum=5.71;DP=38866;ExcessHet=0.0000;FS=0.000;InbreedingCoeff=0.5766;MLEAC=11;MLEAF=6.757e-03;MQ=60.00;MQRankSum=0.00;QD=17.51;ReadPosRankSum=0.00;SOR=1.185 GT:AD:DP:GQ:PGT:PID:PL:PS 0/0:49,0:49:99:.:.:0,120,1800:. 0/0:47,0:47:99:.:.:0,120,1800:. 0/0:50,0:50:99:.:.:0,120,1800:. 0/0:47,0:47:99:.:.:0,120,1800:. 0/0:48,0:48:99:.:.:0,118,1508:. 0/0:48,0:48:99:.:.:0,120,1800:. 0/0:48,0:48:99:.:.:0,120,1800:. 0/0:47,0:47:99:.:.:0,120,1800:. 0/1:23,25:48:99:.:.:578,0,465:. 0/1:26,23:49:99:.:.:531,0,591:. 0/0:49,0:49:99:.:.:0,120,1800:. 0/1:26,23:49:99:.:.:530,0,522:. 0/1:27,22:49:99:.:.:496,0,533:. NW_016690193.1 2018368 . A C 1632.55 . AC=3;AF=1.845e-03;AN=1626;BaseQRankSum=-6.759e+00;DP=39300;ExcessHet=3.0183;FS=0.000;InbreedingCoeff=0.5738;MLEAC=3;MLEAF=1.845e-03;MQ=60.00;MQRankSum=0.00;QD=10.88;ReadPosRankSum=0.00;SOR=0.959 GT:AD:DP:GQ:PL 0/0:47,0:47:99:0,113,1319 0/0:49,0:49:99:0,120,1800 0/0:50,0:50:99:0,120,1800 0/0:49,0:49:99:0,112,1430 0/0:49,0:49:99:0,120,1800 0/0:48,0:48:99:0,120,1800 0/0:50,0:50:99:0,120,1800 0/1:21,29:50:99:594,0,491 0/0:48,0:48:99:0,112,1320 0/1:21,29:50:99:593,0,788 0/1:24,26:50:99:518,0,585 0/0:50,0:50:99:0,120,1800 0/0:49,0:49:99:0,120,1800 NW_016690193.1 2667054 . T C 2122.72 . AC=3;AF=1.852e-03;AN=1620;BaseQRankSum=-6.660e+00;DP=38001;ExcessHet=0.0040;FS=0.000;InbreedingCoeff=0.6055;MLEAC=3;MLEAF=1.852e-03;MQ=60.00;MQRankSum=0.00;QD=21.66;ReadPosRankSum=0.981;SOR=2.117 GT:AD:DP:GQ:PGT:PID:PL:PS 0/0:49,0:49:99:.:.:0,120,1467:. 0/0:48,0:48:99:.:.:0,120,1800:. 0/0:49,0:49:99:.:.:0,119,1510:. 0/0:46,0:46:99:.:.:0,118,1233:. 0/0:49,0:49:99:.:.:0,119,1320:. 0/0:48,0:48:99:.:.:0,117,1011:. 0/0:49,0:49:99:.:.:0,120,1800:. 0/0:48,0:48:99:.:.:0,120,1800:. 0|1:26,23:49:82:0|1:2667052_C_T:82,0,558:2667052 0/0:49,0:49:99:.:.:0,120,1800:. 0/0:49,0:49:99:.:.:0,119,1412:. 1|1:0,49:49:99:1|1:2667052_C_T:2119,147,0:2667052 0/0:48,0:48:99:.:.:0,109,1259:. NW_016690193.1 3784460 . C T 67752.8 . AC=116;AF=0.072;AN=1622;BaseQRankSum=6.69;DP=38145;ExcessHet=0.0000;FS=0.000;InbreedingCoeff=0.2910;MLEAC=120;MLEAF=0.074;MQ=60.00;MQRankSum=0.00;QD=14.19;ReadPosRankSum=0.00;SOR=1.662 GT:AD:DP:GQ:PL 1/1:1,48:49:99:1304,121,0 1/1:0,49:49:99:1266,147,0 1/1:0,50:50:99:1337,150,0 0/0:49,0:49:99:0,120,1800 0/0:49,0:49:99:0,120,1800 0/0:50,0:50:99:0,118,1376 0/0:50,0:50:0:0,0,411 1/1:0,37:37:99:1007,111,0 0/1:15,34:50:99:827,0,249 1/1:0,50:50:99:1332,150,0 1/1:0,49:49:99:1302,147,0 0/1:10,37:47:99:921,0,126 0/1:25,24:49:99:517,0,494 NW_016690193.1 4237801 . T A 56208.2 . AC=75;AF=0.046;AN=1632;BaseQRankSum=5.48;DP=39937;ExcessHet=-0.0000;FS=30.512;InbreedingCoeff=0.8453;MLEAC=78;MLEAF=0.048;MQ=60.00;MQRankSum=0.00;QD=26.31;ReadPosRankSum=0.00;SOR=4.891 GT:AD:DP:GQ:PGT:PID:PL:PS 0/0:48,0:48:99:.:.:0,120,1380:. 1/1:0,49:49:99:.:.:1460,146,0:. 0/0:48,0:48:99:.:.:0,120,1062:. 0/1:20,25:45:99:.:.:635,0,439:. 0/1:21,27:48:99:.:.:648,0,460:. 0/1:25,24:49:99:.:.:591,0,544:. 0/0:48,0:48:99:.:.:0,120,1800:. 0/0:49,0:49:99:.:.:0,120,1085:. 0/0:49,0:49:99:.:.:0,120,1800:. 0/0:48,0:48:99:.:.:0,120,1800:. 0/0:48,0:48:99:.:.:0,116,1005:. 0/0:49,0:49:99:.:.:0,120,1800:. 0/0:49,0:49:99:.:.:0,111,1268:. NW_016690193.1 4529674 . T C 140250 . AC=307;AF=0.192;AN=1598;BaseQRankSum=-3.399e+00;DP=34948;ExcessHet=0.0003;FS=0.000;InbreedingCoeff=0.1755;MLEAC=324;MLEAF=0.203;MQ=60.00;MQRankSum=0.00;QD=14.40;ReadPosRankSum=0.00;SOR=1.104 GT:AD:DP:GQ:PGT:PID:PL:PS 0|1:18,23:41:99:0|1:4529674_T_C:893,0,565:4529674 0|1:15,24:39:99:0|1:4529674_T_C:963,0,459:4529674 0|1:17,22:39:99:0|1:4529674_T_C:873,0,648:4529674 0/0:44,0:44:99:.:.:0,120,1207:. 0/0:43,0:43:99:.:.:0,120,1800:. 0/1:15,18:33:99:.:.:382,0,326:. 1/1:0,40:40:99:.:.:1537,120,0:. 0/1:18,11:29:99:.:.:195,0,409:. 1/1:0,46:46:99:.:.:1182,138,0:. 1/1:0,44:44:99:.:.:1506,132,0:. 0/1:17,13:30:99:.:.:245,0,382:. 1/1:0,49:49:99:.:.:1249,147,0:. 0/1:23,25:48:99:.:.:495,0,490:. NW_016690193.1 4820930 . G A 111612 . AC=179;AF=0.113;AN=1590;BaseQRankSum=6.41;DP=40197;ExcessHet=0.0000;FS=0.000;InbreedingCoeff=0.3148;MLEAC=189;MLEAF=0.119;MQ=59.99;MQRankSum=0.00;QD=15.33;ReadPosRankSum=0.00;SOR=1.114 GT:AD:DP:GQ:PGT:PID:PL:PS 0/0:51,0:51:99:.:.:0,118,1405:. 0/0:50,0:50:99:.:.:0,105,1050:. 0/0:49,0:49:99:.:.:0,120,1800:. 0|1:18,26:44:99:0|1:4820930_G_A:614,0,453:4820930 0/1:25,25:50:99:.:.:578,0,99:. 0/0:48,0:48:99:.:.:0,100,773:. 0/1:30,20:50:99:.:.:401,0,149:. 1/1:1,48:49:99:.:.:1355,137,0:. 0/0:47,0:47:99:.:.:0,112,1182:. 1/1:0,51:51:99:.:.:1537,153,0:. 0/1:34,17:51:99:.:.:322,0,187:. 0/0:47,0:47:99:.:.:0,106,1225:. 0/0:49,0:49:99:.:.:0,103,1191:. NW_016690193.1 5224440 . C T 6578.96 . AC=10;AF=6.274e-03;AN=1594;BaseQRankSum=6.29;DP=37761;ExcessHet=3.1336;FS=0.000;InbreedingCoeff=0.4993;MLEAC=11;MLEAF=6.901e-03;MQ=60.00;MQRankSum=0.00;QD=13.43;ReadPosRankSum=0.00;SOR=0.869 GT:AD:DP:GQ:PGT:PID:PL:PS 0|1:27,21:48:99:0|1:5224438_G_A:795,0,1071:5224438 0/0:48,0:48:99:.:.:0,120,1800:. 0/0:50,0:50:99:.:.:0,120,1800:. 0/0:50,0:50:99:.:.:0,120,1800:. 0/1:26,22:48:99:.:.:527,0,581:. 0/0:49,0:49:99:.:.:0,120,1800:. 0/1:20,27:47:99:.:.:665,0,413:. 0/1:28,22:50:99:.:.:505,0,627:. 0/0:49,0:49:99:.:.:0,116,1448:. 0/1:19,31:50:99:.:.:766,0,371:. 0/1:25,24:49:99:.:.:587,0,545:. 0/0:46,0:46:99:.:.:0,120,1800:. 0/0:49,0:49:99:.:.:0,118,1373:. NW_016690193.1 6102580 . C T 1456.64 . AC=4;AF=2.509e-03;AN=1594;BaseQRankSum=6.15;DP=34546;ExcessHet=0.0082;FS=0.000;InbreedingCoeff=0.6086;MLEAC=4;MLEAF=2.509e-03;MQ=60.00;MQRankSum=0.00;QD=12.89;ReadPosRankSum=0.00;SOR=1.035 GT:AD:DP:GQ:PL 0/0:49,0:49:99:0,120,1506 0/0:47,0:47:99:0,108,1222 0/1:27,23:50:99:507,0,518 0/0:48,0:48:99:0,120,1800 0/1:20,25:45:99:587,0,340 0/0:49,0:49:99:0,119,1312 0/0:48,0:48:99:0,115,1315 1/1:1,17:18:30:459,30,0 0/0:48,0:48:99:0,120,1800 0/0:47,0:47:99:0,120,1800 0/0:38,0:38:99:0,114,877 0/0:49,0:49:99:0,120,1800 0/0:49,0:49:99:0,119,1311 NW_016690193.1 6677854 . G A 26794.8 . AC=47;AF=0.029;AN=1618;BaseQRankSum=2.38;DP=38716;ExcessHet=0.0001;FS=0.000;InbreedingCoeff=0.3745;MLEAC=49;MLEAF=0.030;MQ=59.96;MQRankSum=0.00;QD=13.25;ReadPosRankSum=0.00;SOR=1.008 GT:AD:DP:GQ:PGT:PID:PL:PS 0/0:52,0:52:99:.:.:0,120,1800:. 0/0:52,0:52:99:.:.:0,119,1469:. 0/0:49,0:49:99:.:.:0,112,1403:. 0/0:51,0:51:99:.:.:0,120,1800:. 0/1:30,19:49:99:.:.:381,0,611:. 0/0:46,0:46:99:.:.:0,120,1800:. 0/0:48,0:48:99:.:.:0,120,1800:. 0/0:47,0:47:99:.:.:0,102,1183:. 0|1:29,21:50:99:0|1:6677844_T_G:431,0,620:6677844 0/0:53,0:53:99:.:.:0,120,1800:. 0/0:50,0:50:99:.:.:0,120,1800:. 1/1:0,52:52:99:.:.:1447,156,0:. 1/1:0,50:50:99:.:.:1368,150,0:. NW_016690193.1 6758037 . G A 17483.8 . AC=25;AF=0.015;AN=1618;BaseQRankSum=6.31;DP=39713;ExcessHet=0.0303;FS=0.000;InbreedingCoeff=0.4192;MLEAC=26;MLEAF=0.016;MQ=60.00;MQRankSum=0.00;QD=14.91;ReadPosRankSum=0.00;SOR=0.895 GT:AD:DP:GQ:PGT:PID:PL:PS 0/0:56,0:56:99:.:.:0,108,1502:. 0/0:51,0:51:99:.:.:0,120,1323:. 0/1:20,28:48:99:.:.:727,0,424:. 0/0:50,0:50:99:.:.:0,115,1406:. 0/0:47,0:47:99:.:.:0,120,1800:. 0/0:47,0:47:99:.:.:0,119,1486:. 0/0:46,0:46:99:.:.:0,112,1250:. 1/1:0,50:50:99:.:.:1630,150,0:. 0/0:49,0:49:99:.:.:0,120,1800:. 0/1:28,22:50:99:.:.:543,0,656:. 0/0:46,0:46:99:.:.:0,115,780:. 0/0:50,0:50:99:.:.:0,118,1379:. 0/1:25,23:48:99:.:.:600,0,619:. NW_016690193.1 6903872 . G C 4402.07 . 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AC=4;AF=2.497e-03;AN=1602;BaseQRankSum=-5.985e+00;DP=34759;ExcessHet=3.0266;FS=0.000;InbreedingCoeff=0.5633;MLEAC=4;MLEAF=2.497e-03;MQ=60.00;MQRankSum=0.00;QD=10.74;ReadPosRankSum=0.00;SOR=0.933 GT:AD:DP:GQ:PL 0/0:49,0:49:99:0,116,1303 0/0:49,0:49:99:0,110,1422 0/0:49,0:49:99:0,103,1404 0/1:18,28:46:99:584,0,379 0/1:22,27:49:99:508,0,450 0/0:48,0:48:99:0,120,1491 0/1:25,24:49:99:471,0,547 0/0:47,0:47:99:0,120,1800 0/0:49,0:49:99:0,119,1039 0/0:49,0:49:99:0,120,1800 0/0:49,0:49:99:0,119,1317 0/0:48,0:48:99:0,120,1800 0/1:21,28:49:99:600,0,416 NW_016690197.1 1104839 . C G 186433 . 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AC=10;AF=6.180e-03;AN=1618;BaseQRankSum=5.51;DP=39508;ExcessHet=0.0000;FS=0.000;InbreedingCoeff=0.6052;MLEAC=10;MLEAF=6.180e-03;MQ=60.00;MQRankSum=0.00;QD=17.79;ReadPosRankSum=0.00;SOR=1.714 GT:AD:DP:GQ:PL 1/1:0,52:52:99:1515,156,0 0/0:49,0:49:99:0,120,1800 0/0:49,0:49:99:0,120,1800 0/1:29,21:50:99:517,0,714 0/0:50,0:50:99:0,120,1800 0/1:27,23:50:99:578,0,669 0/1:28,20:48:99:407,0,598 0/0:49,0:49:99:0,120,1414 0/0:50,0:50:99:0,120,1800 0/0:50,0:50:99:0,109,1334 0/0:51,0:51:99:0,120,1800 0/0:47,0:47:99:0,109,1350 0/0:50,0:50:99:0,120,1800 NW_016690211.1 4002364 . C T 2133.48 . AC=3;AF=1.843e-03;AN=1628;BaseQRankSum=6.19;DP=39233;ExcessHet=0.0040;FS=0.000;InbreedingCoeff=0.6357;MLEAC=3;MLEAF=1.843e-03;MQ=60.00;MQRankSum=0.00;QD=21.77;ReadPosRankSum=0.00;SOR=2.502 GT:AD:DP:GQ:PL 0/0:50,0:50:99:0,120,1800 0/0:49,0:49:99:0,119,1205 0/0:49,0:49:99:0,120,1800 0/0:48,0:48:99:0,119,1080 0/1:22,28:50:99:705,0,478 0/0:50,0:50:99:0,115,715 0/0:49,0:49:99:0,120,1800 1/1:0,48:48:99:1507,144,0 0/0:49,0:49:99:0,120,1800 0/0:50,0:50:99:0,119,1306 0/0:50,0:50:99:0,120,1800 0/0:50,0:50:99:0,120,1800 0/0:49,0:49:99:0,120,1800 NW_016690211.1 4452364 . T C 3089.58 . AC=5;AF=3.083e-03;AN=1622;BaseQRankSum=-4.286e+00;DP=38628;ExcessHet=0.0000;FS=0.000;InbreedingCoeff=0.6187;MLEAC=5;MLEAF=3.083e-03;MQ=60.00;MQRankSum=0.00;QD=21.31;ReadPosRankSum=0.00;SOR=1.369 GT:AD:DP:GQ:PGT:PID:PL:PS 0/0:49,0:49:99:.:.:0,118,1273:. 1/1:0,45:45:99:.:.:1268,135,0:. 0/0:50,0:50:99:.:.:0,120,1800:. 0/0:50,0:50:99:.:.:0,120,1800:. 0/0:50,0:50:99:.:.:0,120,1800:. 0/0:50,0:50:99:.:.:0,120,1800:. 0/0:50,0:50:99:.:.:0,120,1800:. 0/0:49,0:49:99:.:.:0,120,1800:. 0/1:22,28:50:99:.:.:621,0,521:. 0/0:49,0:49:99:.:.:0,120,1800:. 0/0:94,0:94:99:.:.:0,120,1800:. 1/1:1,49:50:99:.:.:1322,119,0:. 0/0:49,0:49:99:.:.:0,120,1800:. NW_016690211.1 5968536 . A C 1257.87 . AC=3;AF=1.863e-03;AN=1610;BaseQRankSum=-3.914e+00;DP=36801;ExcessHet=0.0041;FS=0.000;InbreedingCoeff=0.6111;MLEAC=3;MLEAF=1.863e-03;MQ=60.00;MQRankSum=0.00;QD=13.10;ReadPosRankSum=6.94;SOR=1.814 GT:AD:DP:GQ:PL 0/0:46,0:46:99:0,106,1146 0/0:46,0:46:99:0,120,1800 0/0:47,0:47:99:0,108,1223 0/0:47,0:47:99:0,114,1305 0/0:44,0:44:99:0,100,1127 0/0:47,0:47:99:0,120,1800 0/0:47,0:47:99:0,117,1510 0/0:48,0:48:99:0,120,1800 1/1:1,46:47:99:987,109,0 0/0:47,0:47:99:0,102,1365 0/0:49,0:49:99:0,120,1800 0/0:49,0:49:99:0,102,1387 0/1:28,21:49:99:349,0,700 NW_016690211.1 6441265 . G A 134531 . 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AC=5;AF=3.113e-03;AN=1606;BaseQRankSum=3.78;DP=36648;ExcessHet=0.0136;FS=0.000;InbreedingCoeff=0.5833;MLEAC=5;MLEAF=3.113e-03;MQ=59.99;MQRankSum=0.00;QD=14.28;ReadPosRankSum=0.00;SOR=1.142 GT:AD:DP:GQ:PL 0/0:50,0:50:99:0,110,1332 0/0:49,0:49:99:0,120,1800 0/0:48,0:48:99:0,103,1303 0/1:29,19:48:99:396,0,670 0/0:48,0:48:99:0,120,1800 0/0:49,0:49:99:0,120,1800 0/0:46,0:46:99:0,119,729 0/1:23,24:47:99:558,0,474 0/0:46,0:46:99:0,111,964 0/1:23,19:42:99:416,0,506 0/0:47,0:47:99:0,109,1164 1/1:0,48:48:99:1387,144,0 0/0:47,0:47:99:0,120,1249 NW_016690255.1 5483951 . A G 3554.23 . 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AC=4;AF=2.457e-03;AN=1628;BaseQRankSum=-5.278e+00;DP=39668;ExcessHet=0.0080;FS=0.000;InbreedingCoeff=0.6006;MLEAC=4;MLEAF=2.457e-03;MQ=60.00;MQRankSum=0.00;QD=14.87;ReadPosRankSum=1.20;SOR=1.657 GT:AD:DP:GQ:PL 0/0:49,0:49:99:0,104,1155 0/0:49,0:49:99:0,110,1401 0/0:50,0:50:99:0,120,1800 0/0:48,0:48:99:0,109,1482 0/0:50,0:50:99:0,107,1185 0/0:46,0:46:99:0,118,1283 0/0:49,0:49:99:0,120,1800 0/0:47,0:47:99:0,113,1192 0/1:31,21:52:99:385,0,719 0/0:51,0:51:99:0,120,1800 0/0:51,0:51:99:0,110,1227 1/1:0,50:50:99:1312,150,0 0/1:18,31:49:99:646,0,348 NW_016690195.1 585028 . G A 665008 . 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AC=7;AF=4.316e-03;AN=1622;BaseQRankSum=-5.532e+00;DP=38476;ExcessHet=3.0668;FS=0.000;InbreedingCoeff=0.4863;MLEAC=7;MLEAF=4.316e-03;MQ=60.00;MQRankSum=0.00;QD=10.27;ReadPosRankSum=0.00;SOR=0.653 GT:AD:DP:GQ:PL 0/1:25,24:49:99:534,0,592 0/1:27,22:49:99:457,0,604 0/1:24,22:46:99:492,0,600 0/1:20,29:49:99:666,0,460 0/1:26,23:49:99:510,0,642 0/0:47,0:47:99:0,120,1800 0/1:27,22:49:99:422,0,593 0/0:49,0:49:99:0,120,1800 0/0:49,0:49:99:0,114,1413 0/0:50,0:50:99:0,105,1317 0/0:50,0:50:99:0,120,1800 0/0:50,0:50:99:0,109,1154 0/0:47,0:47:99:0,120,1194 NW_016690195.1 3478530 . A T 17847.4 . 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AC=4;AF=2.457e-03;AN=1628;BaseQRankSum=5.78;DP=39501;ExcessHet=0.0080;FS=0.000;InbreedingCoeff=0.6119;MLEAC=4;MLEAF=2.457e-03;MQ=60.00;MQRankSum=0.00;QD=17.23;ReadPosRankSum=0.00;SOR=1.516 GT:AD:DP:GQ:PL 0/0:50,0:50:99:0,120,1800 0/0:49,0:49:99:0,120,1800 0/0:50,0:50:99:0,119,1346 0/0:50,0:50:99:0,119,1209 0/0:50,0:50:99:0,120,1800 0/0:50,0:50:99:0,120,1800 0/0:49,0:49:99:0,120,1800 0/1:26,23:49:99:532,0,572 0/1:25,25:50:99:608,0,520 0/0:47,0:47:99:0,120,1800 0/0:49,0:49:99:0,119,1431 1/1:0,49:49:99:1507,147,0 0/0:49,0:49:99:0,120,1800 NW_016690195.1 6380458 . G A 15488.7 . 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AC=5;AF=3.109e-03;AN=1608;BaseQRankSum=6.48;DP=36906;ExcessHet=0.0000;FS=0.000;InbreedingCoeff=0.6482;MLEAC=5;MLEAF=3.109e-03;MQ=60.00;MQRankSum=0.00;QD=26.97;ReadPosRankSum=0.00;SOR=2.593 GT:AD:DP:GQ:PGT:PID:PL:PS 0/0:50,0:50:99:.:.:0,108,1175:. 0/0:50,0:50:99:.:.:0,120,1800:. 0/0:49,0:49:99:.:.:0,120,1800:. 0/1:29,19:48:99:.:.:459,0,690:. 1/1:1,46:47:99:.:.:1449,112,0:. 0/0:49,0:49:99:.:.:0,116,1301:. 0/0:49,0:49:99:.:.:0,120,1800:. 0/0:49,0:49:99:.:.:0,120,1269:. 0/0:50,0:50:99:.:.:0,120,1800:. 0/0:49,0:49:99:.:.:0,120,1800:. 0/0:50,0:50:99:.:.:0,120,1364:. 0/0:49,0:49:99:.:.:0,120,1800:. 0/0:49,0:49:99:.:.:0,120,1800:. NW_016690199.1 7286778 . G A 392607 . 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AC=14;AF=8.610e-03;AN=1626;BaseQRankSum=6.66;DP=38548;ExcessHet=0.0000;FS=0.000;InbreedingCoeff=0.6154;MLEAC=10;MLEAF=6.150e-03;MQ=60.00;MQRankSum=0.00;QD=12.95;ReadPosRankSum=0.00;SOR=0.776 GT:AD:DP:GQ:PGT:PID:PL:PS 0/0:47,0:47:99:.:.:0,117,1156:. 0/0:47,0:47:99:.:.:0,118,1279:. 0/0:49,0:49:99:.:.:0,119,1323:. 0/1:28,20:48:99:.:.:499,0,1116:. 0/0:49,0:49:99:.:.:0,120,1800:. 0/0:49,0:49:99:.:.:0,120,1800:. 0/0:49,0:49:99:.:.:0,120,1800:. 0/1:29,20:49:99:.:.:446,0,626:. 0/0:49,0:49:99:.:.:0,120,1800:. 0/1:27,23:50:99:.:.:507,0,570:. 0/1:23,25:49:99:.:.:575,0,469:. 0/0:49,0:49:99:.:.:0,120,1800:. 0/0:48,0:48:99:.:.:0,120,1800:. NW_016690199.1 8013149 . A G 144916 . 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AC=28;AF=0.017;AN=1610;BaseQRankSum=-6.641e+00;DP=38159;ExcessHet=-0.0000;FS=0.000;InbreedingCoeff=0.6863;MLEAC=30;MLEAF=0.019;MQ=60.00;MQRankSum=0.00;QD=7.02;ReadPosRankSum=0.00;SOR=3.804 GT:AD:DP:GQ:PL 1/1:0,49:49:99:466,125,0 0/0:49,0:49:99:0,114,1297 0/0:49,0:49:99:0,120,1610 1/1:0,50:50:99:476,127,0 1/1:0,50:50:99:476,127,0 0/0:50,0:50:99:0,120,1800 1/1:0,50:50:99:476,127,0 1/1:0,49:49:99:466,125,0 0/1:30,19:49:42:42,0,724 1/1:0,50:50:99:476,127,0 0/0:50,0:50:99:0,120,1800 1/1:0,50:50:99:476,127,0 0/1:30,20:50:49:49,0,690 NW_016690217.1 4419504 . G A 8429.58 . AC=13;AF=8.055e-03;AN=1614;BaseQRankSum=2.28;DP=40602;ExcessHet=0.0000;FS=0.000;InbreedingCoeff=0.6153;MLEAC=14;MLEAF=8.674e-03;MQ=59.97;MQRankSum=0.00;QD=20.51;ReadPosRankSum=0.00;SOR=1.595 GT:AD:DP:GQ:PL 1/1:0,50:50:99:1421,150,0 1/1:0,49:49:99:1352,146,0 0/1:49,52:101:99:1202,0,861 0/0:52,0:52:99:0,120,1800 0/0:50,0:50:99:0,120,1800 0/0:51,0:51:99:0,120,1800 0/0:49,0:49:99:0,120,1800 0/0:50,0:50:99:0,120,1800 0/0:50,0:50:99:0,120,1800 0/0:50,0:50:99:0,120,1800 0/0:53,0:53:99:0,120,1800 0/0:50,0:50:99:0,120,1800 0/0:56,0:56:99:0,120,1800 NW_016690217.1 4612693 . C T 7890.67 . AC=9;AF=5.535e-03;AN=1626;BaseQRankSum=-2.475e+00;DP=38178;ExcessHet=0.0000;FS=59.376;InbreedingCoeff=0.6751;MLEAC=9;MLEAF=5.535e-03;MQ=60.00;MQRankSum=0.00;QD=32.21;ReadPosRankSum=0.122;SOR=5.302 GT:AD:DP:GQ:PGT:PID:PL:PS 0/0:50,0:50:99:.:.:0,120,1800:. 0/0:47,0:47:99:.:.:0,115,1445:. 0/0:48,0:48:99:.:.:0,118,1474:. 0/0:39,0:39:99:.:.:0,105,999:. 0/0:48,0:48:99:.:.:0,117,1317:. 0/0:49,0:49:99:.:.:0,99,1209:. 0/0:47,0:47:99:.:.:0,117,1328:. 0/0:48,0:48:99:.:.:0,103,1216:. 1/1:0,50:50:99:.:.:1577,150,0:. 0/0:46,0:46:99:.:.:0,119,1292:. 0/0:48,0:48:99:.:.:0,120,1800:. 1|1:0,49:49:99:1|1:4612693_C_T:2195,147,0:4612693 1/1:0,50:50:99:.:.:1585,150,0:. NW_016690217.1 8361261 . G A 71432.5 . AC=109;AF=0.067;AN=1620;BaseQRankSum=6.25;DP=38301;ExcessHet=-0.0000;FS=15.300;InbreedingCoeff=0.8497;MLEAC=113;MLEAF=0.070;MQ=60.00;MQRankSum=0.00;QD=25.86;ReadPosRankSum=0.00;SOR=5.365 GT:AD:DP:GQ:PGT:PID:PL:PS 0/0:48,0:48:99:.:.:0,116,772:. 0/0:48,0:48:99:.:.:0,120,1800:. 0/0:48,0:48:99:.:.:0,120,1800:. 1/1:0,49:49:99:.:.:1494,147,0:. 0/1:25,25:50:99:.:.:606,0,99:. 0/1:26,24:50:99:.:.:572,0,109:. 0/1:29,22:51:99:.:.:490,0,136:. 0/0:49,0:49:99:.:.:0,103,1437:. 1/1:0,51:51:99:.:.:1847,153,0:. 0/0:49,0:49:99:.:.:0,120,1800:. 0/0:48,0:48:99:.:.:0,120,1800:. 1/1:0,49:49:99:.:.:1391,146,0:. 1/1:0,49:49:99:.:.:1383,147,0:. NW_016690200.1 924265 . C T 31393.5 . AC=49;AF=0.030;AN=1634;BaseQRankSum=6.47;DP=39375;ExcessHet=0.4369;FS=0.000;InbreedingCoeff=0.2403;MLEAC=50;MLEAF=0.031;MQ=60.00;MQRankSum=0.00;QD=13.29;ReadPosRankSum=0.982;SOR=0.506 GT:AD:DP:GQ:PGT:PID:PL:PS 0/1:21,29:50:99:.:.:706,0,411:. 0/0:49,0:49:99:.:.:0,120,1800:. 0/0:47,0:47:99:.:.:0,120,1800:. 0/0:49,0:49:99:.:.:0,115,1452:. 0/0:49,0:49:99:.:.:0,120,1800:. 0/0:48,0:48:99:.:.:0,120,1800:. 0/0:50,0:50:99:.:.:0,120,1800:. 0/0:49,0:49:99:.:.:0,114,1488:. 0/1:24,27:51:99:.:.:640,0,485:. 0/0:50,0:50:99:.:.:0,120,1800:. 0/0:50,0:50:99:.:.:0,120,1800:. 0/1:28,26:54:99:.:.:609,0,568:. 0/1:23,28:51:99:.:.:685,0,480:. NW_016690200.1 1194806 . A G 9858.03 . AC=15;AF=9.236e-03;AN=1624;BaseQRankSum=-6.075e+00;DP=38791;ExcessHet=0.0000;FS=0.000;InbreedingCoeff=0.5025;MLEAC=16;MLEAF=9.852e-03;MQ=60.00;MQRankSum=0.00;QD=16.54;ReadPosRankSum=-6.916e+00;SOR=1.210 GT:AD:DP:GQ:PGT:PID:PL:PS 0/0:51,0:51:99:.:.:0,120,1800:. 0/0:50,0:50:99:.:.:0,120,1800:. 0/0:48,0:48:99:.:.:0,115,1393:. 0/0:50,0:50:99:.:.:0,120,1800:. 0/1:24,26:50:99:.:.:598,0,544:. 0/0:50,0:50:99:.:.:0,120,1800:. 0/0:49,0:49:99:.:.:0,120,1800:. 0/0:49,0:49:99:.:.:0,115,1379:. 1/1:0,50:50:99:.:.:1410,150,0:. 0/0:52,0:52:99:.:.:0,120,1800:. 0/0:50,0:50:99:.:.:0,120,1800:. 0/1:31,19:50:99:.:.:394,0,760:. 0/1:28,21:49:99:.:.:474,0,712:. NW_016690200.1 1563746 . C T 438713 . AC=502;AF=0.309;AN=1624;BaseQRankSum=6.16;DP=40077;ExcessHet=0.0000;FS=0.000;InbreedingCoeff=0.2034;MLEAC=523;MLEAF=0.322;MQ=59.99;MQRankSum=0.00;QD=22.88;ReadPosRankSum=0.00;SOR=0.176 GT:AD:DP:GQ:PGT:PID:PL:PS 1|1:0,54:54:99:1|1:1563746_C_T:2418,163,0:1563746 0|1:31,20:51:99:0|1:1563746_C_T:746,0,1241:1563746 1|1:0,45:46:99:1|1:1563746_C_T:2025,135,0:1563746 1|1:0,51:51:99:1|1:1563746_C_T:2278,154,0:1563746 1|1:0,48:48:99:1|1:1563746_C_T:2154,144,0:1563746 0|1:25,23:48:99:0|1:1563746_C_T:891,0,981:1563746 0|1:35,17:52:99:0|1:1563746_C_T:583,0,1419:1563746 1|1:0,48:49:99:1|1:1563746_C_T:2160,144,0:1563746 1|1:0,51:51:99:1|1:1563746_C_T:2261,153,0:1563746 1|1:0,54:54:99:1|1:1563746_C_T:2430,163,0:1563746 1|1:0,52:52:99:1|1:1563746_C_T:2328,157,0:1563746 0|1:29,22:51:99:0|1:1563746_C_T:836,0,1151:1563746 1|1:0,49:49:99:1|1:1563746_C_T:2205,147,0:1563746 NW_016690200.1 3364888 . A G 504914 . AC=526;AF=0.326;AN=1614;BaseQRankSum=-6.181e+00;DP=39363;ExcessHet=0.0000;FS=0.000;InbreedingCoeff=0.2235;MLEAC=550;MLEAF=0.341;MQ=60.00;MQRankSum=0.00;QD=25.75;ReadPosRankSum=0.00;SOR=0.913 GT:AD:DP:GQ:PGT:PID:PL:PS 0|1:24,25:49:99:0|1:3364888_A_G:978,0,933:3364888 1|1:0,50:50:99:1|1:3364888_A_G:2250,151,0:3364888 1|1:0,50:50:99:1|1:3364888_A_G:2241,151,0:3364888 0|1:23,27:50:99:0|1:3364888_A_G:1056,0,884:3364888 1|1:0,50:50:99:1|1:3364888_A_G:2250,151,0:3364888 1|1:0,49:49:99:1|1:3364888_A_G:2205,147,0:3364888 1|1:0,50:50:99:1|1:3364888_A_G:2250,151,0:3364888 1|1:0,50:50:99:1|1:3364888_A_G:2250,151,0:3364888 0|1:26,24:50:99:0|1:3364888_A_G:929,0,1019:3364888 0|1:22,28:50:99:0|1:3364888_A_G:1109,0,839:3364888 0|1:28,22:50:99:0|1:3364888_A_G:839,0,1109:3364888 0/0:49,0:49:99:.:.:0,119,1405:. 0/0:48,0:48:99:.:.:0,120,1329:. NW_016690200.1 3528343 . C T 29666.9 . AC=48;AF=0.030;AN=1576;BaseQRankSum=3.67;DP=37916;ExcessHet=-0.0000;FS=2.244;InbreedingCoeff=0.6127;MLEAC=51;MLEAF=0.032;MQ=60.00;MQRankSum=0.00;QD=19.04;ReadPosRankSum=0.00;SOR=1.670 GT:AD:DP:GQ:PGT:PID:PL:PS 0/0:50,0:50:99:.:.:0,120,1800:. 0/0:54,0:54:99:.:.:0,110,1315:. 0/0:48,0:48:99:.:.:0,120,1800:. 0/0:49,0:49:99:.:.:0,119,1346:. 0/0:48,0:48:99:.:.:0,110,1196:. 0/0:49,0:49:99:.:.:0,118,1251:. 0/0:51,0:51:99:.:.:0,120,1800:. 0/0:48,0:48:99:.:.:0,119,1442:. 0/0:49,0:49:99:.:.:0,107,1336:. 0/0:48,0:48:99:.:.:0,113,1286:. 1/1:1,48:49:99:.:.:1528,137,0:. 0/0:49,0:49:99:.:.:0,115,1314:. 0/1:23,26:49:99:.:.:645,0,455:. NW_016690200.1 4139527 . C T 32344 . AC=40;AF=0.025;AN=1624;BaseQRankSum=4.99;DP=38001;ExcessHet=0.0001;FS=0.000;InbreedingCoeff=0.3966;MLEAC=42;MLEAF=0.026;MQ=60.00;MQRankSum=0.00;QD=19.29;ReadPosRankSum=0.00;SOR=0.878 GT:AD:DP:GQ:PGT:PID:PL:PS 0|1:23,25:48:99:0|1:4139520_G_A:968,0,891:4139520 0/1:28,20:48:99:.:.:467,0,649:. 0/1:26,21:47:99:.:.:534,0,616:. 0/0:48,0:48:99:.:.:0,104,1172:. 0/1:26,24:50:99:.:.:621,0,635:. 0/0:48,0:48:99:.:.:0,106,1313:. 0/0:47,0:47:99:.:.:0,120,1800:. 0/0:48,0:48:99:.:.:0,118,1410:. 0/0:48,0:48:99:.:.:0,120,1800:. 0/0:46,0:46:99:.:.:0,120,1800:. 0/0:45,0:45:99:.:.:0,116,1233:. 1|1:0,47:47:99:1|1:4139520_G_A:2115,141,0:4139520 0|1:27,19:46:99:0|1:4139520_G_A:717,0,1074:4139520 NW_016690200.1 4217551 . C T 17992.6 . AC=31;AF=0.019;AN=1626;BaseQRankSum=6.40;DP=39389;ExcessHet=0.0727;FS=0.000;InbreedingCoeff=0.3608;MLEAC=32;MLEAF=0.020;MQ=60.00;MQRankSum=0.00;QD=12.58;ReadPosRankSum=0.00;SOR=0.730 GT:AD:DP:GQ:PGT:PID:PL:PS 0/0:49,0:49:99:.:.:0,120,1800:. 0/0:49,0:49:99:.:.:0,120,1800:. 0/1:28,22:50:99:.:.:462,0,542:. 0/0:50,0:50:99:.:.:0,120,1800:. 0/0:49,0:49:99:.:.:0,120,1800:. 0/0:49,0:49:99:.:.:0,111,1337:. 0/0:50,0:50:99:.:.:0,120,1800:. 0/1:26,23:49:99:.:.:516,0,495:. 1/1:0,50:50:99:.:.:1425,150,0:. 0/0:49,0:49:99:.:.:0,120,990:. 0/1:23,27:50:99:.:.:640,0,395:. 0/1:27,22:49:99:.:.:462,0,520:. 0/0:49,0:49:99:.:.:0,120,1800:. NW_016690200.1 4315146 . G A 4748.37 . AC=6;AF=3.759e-03;AN=1596;BaseQRankSum=5.38;DP=36827;ExcessHet=3.0513;FS=0.000;InbreedingCoeff=0.5349;MLEAC=6;MLEAF=3.759e-03;MQ=60.00;MQRankSum=0.00;QD=15.93;ReadPosRankSum=0.00;SOR=0.546 GT:AD:DP:GQ:PGT:PID:PL:PS 0/0:50,0:50:99:.:.:0,120,1800:. 0/1:25,22:47:99:.:.:509,0,508:. 0/0:48,0:48:99:.:.:0,102,1250:. 0|1:27,21:48:99:0|1:4315146_G_A:787,0,1071:4315146 0/0:48,0:48:99:.:.:0,120,1800:. 0/0:48,0:48:99:.:.:0,120,1800:. 0/0:49,0:49:99:.:.:0,120,1800:. 0/0:50,0:50:99:.:.:0,120,1800:. 0/0:47,0:47:99:.:.:0,120,1800:. 0/0:48,0:48:99:.:.:0,118,1362:. 0/0:48,0:48:99:.:.:0,113,1408:. 0|1:29,19:48:99:0|1:4315146_G_A:691,0,1161:4315146 0/0:49,0:49:99:.:.:0,113,1328:. NW_016690200.1 4427348 . C T 6084.39 . AC=6;AF=3.695e-03;AN=1624;BaseQRankSum=6.80;DP=38847;ExcessHet=0.0000;FS=0.000;InbreedingCoeff=0.6028;MLEAC=6;MLEAF=3.695e-03;MQ=60.00;MQRankSum=0.00;QD=30.57;ReadPosRankSum=0.00;SOR=2.085 GT:AD:DP:GQ:PGT:PID:PL:PS 1|1:0,49:49:99:1|1:4427348_C_T:2205,147,0:4427348 0|1:25,25:50:99:0|1:4427348_C_T:974,0,974:4427348 0/0:48,0:48:99:.:.:0,120,1800:. 0/0:52,0:52:99:.:.:0,120,1800:. 0/0:49,0:49:99:.:.:0,120,1800:. 0/0:49,0:49:99:.:.:0,120,1800:. 0/0:50,0:50:99:.:.:0,120,1800:. 0/0:50,0:50:99:.:.:0,120,1800:. 0/0:49,0:49:99:.:.:0,119,1438:. 0/0:50,0:50:99:.:.:0,118,1412:. 0/0:49,0:49:99:.:.:0,120,1800:. 0/0:50,0:50:99:.:.:0,120,1800:. 0/0:50,0:50:99:.:.:0,120,1800:. NW_016690200.1 4582232 . A G 4479 . AC=7;AF=4.459e-03;AN=1570;BaseQRankSum=-5.958e+00;DP=38420;ExcessHet=0.0292;FS=0.000;InbreedingCoeff=0.5172;MLEAC=8;MLEAF=5.096e-03;MQ=60.00;MQRankSum=0.00;QD=15.13;ReadPosRankSum=0.00;SOR=1.034 GT:AD:DP:GQ:PGT:PID:PL:PS 0/0:49,0:49:99:.:.:0,120,1800:. 0/0:56,0:56:99:.:.:0,120,1800:. 0/0:49,0:49:99:.:.:0,119,1442:. 0/0:49,0:49:99:.:.:0,120,1800:. 0/0:51,0:51:99:.:.:0,120,1800:. 0/0:48,0:48:99:.:.:0,120,1800:. 0/0:47,0:47:99:.:.:0,120,1800:. 0/1:28,21:49:99:.:.:478,0,739:. 0/0:52,0:52:99:.:.:0,120,1800:. 0/1:27,23:50:99:.:.:507,0,668:. 0/1:23,27:50:99:.:.:567,0,556:. 0/1:26,25:51:99:.:.:603,0,673:. 0|1:22,24:46:30:0|1:4582232_A_G:915,0,30:4582232 NW_016690200.1 6464936 . C T 9227.06 . AC=12;AF=7.353e-03;AN=1632;BaseQRankSum=5.78;DP=40007;ExcessHet=0.0012;FS=0.000;InbreedingCoeff=0.5410;MLEAC=12;MLEAF=7.353e-03;MQ=59.92;MQRankSum=0.00;QD=18.06;ReadPosRankSum=0.891;SOR=1.035 GT:AD:DP:GQ:PGT:PID:PL:PS 0/1:30,24:55:99:.:.:525,0,587:. 0|1:26,25:51:99:0|1:6464936_C_T:958,0,748:6464936 0/0:50,0:50:99:.:.:0,120,1800:. 0/0:50,0:50:99:.:.:0,120,1800:. 0/1:29,23:52:99:.:.:856,0,1148:. 0/0:49,0:49:99:.:.:0,120,1800:. 0/1:29,21:50:99:.:.:431,0,1129:. 0/1:27,27:54:99:.:.:614,0,579:. 0/1:26,24:50:99:.:.:555,0,530:. 0/0:52,0:52:99:.:.:0,120,1800:. 0/0:49,0:49:99:.:.:0,120,1800:. 0/0:50,0:50:99:.:.:0,120,1800:. 0/0:54,0:54:99:.:.:0,120,1306:. NW_016690200.1 6748825 . T C 66083.1 . AC=115;AF=0.070;AN=1632;BaseQRankSum=-5.928e+00;DP=39547;ExcessHet=0.0002;FS=3.329;InbreedingCoeff=0.2410;MLEAC=118;MLEAF=0.072;MQ=60.00;MQRankSum=0.00;QD=13.40;ReadPosRankSum=0.00;SOR=1.054 GT:AD:DP:GQ:PGT:PID:PL:PS 0/0:50,0:50:99:.:.:0,120,1800:. 0/0:51,0:51:99:.:.:0,112,1247:. 0/1:25,22:47:99:.:.:497,0,681:. 0/1:27,24:51:99:.:.:578,0,732:. 0/1:33,19:52:99:.:.:416,0,907:. 0/1:23,28:51:99:.:.:684,0,604:. 0/0:46,0:46:99:.:.:0,120,1800:. 0/1:28,21:49:99:.:.:499,0,786:. 1/1:0,47:47:99:.:.:1465,141,0:. 1/1:0,49:49:99:.:.:1500,147,0:. 0/1:21,26:47:99:.:.:668,0,556:. 1/1:0,53:53:99:.:.:1607,159,0:. 1/1:0,51:51:99:.:.:1548,153,0:. NW_016690201.1 35573 . A G 97993.5 . AC=142;AF=0.087;AN=1628;BaseQRankSum=-5.662e+00;DP=40481;ExcessHet=0.0149;FS=0.000;InbreedingCoeff=0.1776;MLEAC=148;MLEAF=0.091;MQ=60.00;MQRankSum=0.00;QD=13.71;ReadPosRankSum=0.158;SOR=0.842 GT:AD:DP:GQ:PL 0/1:25,28:53:99:617,0,549 0/0:49,0:49:99:0,120,1479 0/1:27,24:51:99:504,0,698 0/0:48,0:48:99:0,120,1800 0/0:48,0:48:99:0,113,1523 0/0:49,0:49:99:0,120,1800 0/0:48,0:48:99:0,113,1339 0/0:48,0:48:99:0,120,1800 0/1:28,25:53:99:539,0,681 0/1:26,27:53:99:641,0,659 0/0:47,0:47:99:0,120,1800 0/0:50,0:50:99:0,120,1800 0/1:21,30:51:99:725,0,511 NW_016690201.1 230188 . T C 55786.3 . AC=53;AF=0.033;AN=1626;BaseQRankSum=-5.691e+00;DP=39893;ExcessHet=-0.0000;FS=7.886;InbreedingCoeff=0.5700;MLEAC=55;MLEAF=0.034;MQ=59.96;MQRankSum=0.00;QD=27.45;ReadPosRankSum=0.00;SOR=1.944 GT:AD:DP:GQ:PGT:PID:PL:PS 0/0:55,0:55:99:.:.:0,119,1436:. 0/0:50,0:50:99:.:.:0,120,1373:. 0|1:23,23:46:99:0|1:230188_T_C:887,0,897:230188 1|1:0,49:49:99:1|1:230188_T_C:2197,147,0:230188 0/0:51,0:51:99:.:.:0,116,1435:. 0/0:50,0:50:99:.:.:0,120,1800:. 0/0:53,0:53:99:.:.:0,120,1800:. 0/0:48,0:48:99:.:.:0,112,1420:. 0/0:51,0:51:99:.:.:0,120,1800:. 0/0:58,0:58:99:.:.:0,117,1753:. 0/0:49,0:49:99:.:.:0,110,1414:. 0|1:33,19:52:99:0|1:230188_T_C:691,0,1328:230188 0/0:51,0:51:99:.:.:0,120,1800:. NW_016690201.1 720678 . G A 1849.66 . AC=3;AF=1.843e-03;AN=1628;BaseQRankSum=6.74;DP=38888;ExcessHet=0.0040;FS=0.000;InbreedingCoeff=0.5731;MLEAC=3;MLEAF=1.843e-03;MQ=60.00;MQRankSum=0.00;QD=18.50;ReadPosRankSum=-2.980e-01;SOR=1.832 GT:AD:DP:GQ:PL 0/0:50,0:50:99:0,120,1800 0/0:50,0:50:99:0,120,1800 0/0:48,0:48:99:0,120,1800 0/0:49,0:49:99:0,120,1800 0/0:47,0:47:99:0,120,1800 0/0:49,0:49:99:0,120,1800 0/0:48,0:48:99:0,118,1436 0/0:49,0:49:99:0,120,1800 0/0:47,0:47:99:0,120,1800 0/1:30,22:52:99:512,0,654 0/0:49,0:49:99:0,120,1448 1/1:0,48:48:99:1416,144,0 0/0:49,0:49:99:0,120,1800 NW_016690201.1 1266247 . G A 571159 . AC=621;AF=0.386;AN=1610;BaseQRankSum=1.15;DP=40293;ExcessHet=0.0000;FS=0.000;InbreedingCoeff=0.1481;MLEAC=662;MLEAF=0.411;MQ=60.00;MQRankSum=0.00;QD=24.39;ReadPosRankSum=0.00;SOR=1.185 GT:AD:DP:GQ:PGT:PID:PL:PS 0|1:24,26:50:99:0|1:1266247_G_A:982,0,930:1266247 0|1:32,18:50:99:0|1:1266247_G_A:659,0,1289:1266247 0/0:46,0:46:99:.:.:0,119,1376:. 1|1:0,48:48:99:1|1:1266247_G_A:2160,144,0:1266247 0/0:49,0:49:99:.:.:0,117,1216:. 0/0:49,0:49:99:.:.:0,120,1800:. 1|1:0,50:50:99:1|1:1266247_G_A:2250,151,0:1266247 0|1:28,22:50:99:0|1:1266247_G_A:839,0,1109:1266247 0|1:27,22:49:99:0|1:1266247_G_A:843,0,1068:1266247 0|1:37,12:49:99:0|1:1266247_G_A:393,0,1518:1266247 1|1:0,50:50:99:1|1:1266247_G_A:2214,150,0:1266247 0|1:28,21:50:99:0|1:1266247_G_A:791,0,1113:1266247 0/0:50,0:50:0:.:.:0,0,384:. NW_016690201.1 1389518 . C T 286556 . AC=463;AF=0.285;AN=1624;BaseQRankSum=6.65;DP=40194;ExcessHet=0.0000;FS=0.000;InbreedingCoeff=0.1806;MLEAC=481;MLEAF=0.296;MQ=60.00;MQRankSum=0.00;QD=15.42;ReadPosRankSum=0.00;SOR=0.803 GT:AD:DP:GQ:PGT:PID:PL:PS 0/1:48,49:98:99:.:.:1180,0,710:. 0|1:28,21:49:99:0|1:1389518_C_T:798,0,1113:1389518 0|1:24,26:50:99:0|1:1389518_C_T:1019,0,929:1389518 0/0:49,0:49:99:.:.:0,120,1800:. 0/1:24,26:50:99:.:.:574,0,399:. 0/0:49,0:49:99:.:.:0,120,1418:. 0/0:50,0:50:99:.:.:0,120,1800:. 0/1:24,25:49:99:.:.:570,0,420:. 0/1:30,20:50:99:.:.:421,0,531:. 0/1:25,24:49:99:.:.:521,0,408:. 0/0:48,0:48:99:.:.:0,118,1339:. 0/1:25,24:49:99:.:.:518,0,446:. 0/1:31,19:50:99:.:.:410,0,611:. NW_016690201.1 1481906 . T C 966.52 . AC=3;AF=1.838e-03;AN=1632;BaseQRankSum=-5.727e+00;DP=39118;ExcessHet=3.0183;FS=0.000;InbreedingCoeff=0.5422;MLEAC=3;MLEAF=1.838e-03;MQ=60.00;MQRankSum=0.00;QD=6.62;ReadPosRankSum=0.760;SOR=0.271 GT:AD:DP:GQ:PL 0/0:53,0:53:99:0,120,1800 0/0:52,0:52:99:0,120,1800 0/0:48,0:48:99:0,118,1341 0/0:49,0:49:99:0,120,1800 0/0:48,0:48:99:0,120,1800 0/0:48,0:48:99:0,120,1800 0/0:45,0:45:99:0,109,1453 0/0:50,0:50:99:0,108,1349 0/1:33,17:50:99:334,0,884 0/0:52,0:52:99:0,120,1800 0/0:50,0:50:99:0,120,1800 0/1:30,19:49:99:390,0,798 0/1:31,16:47:99:315,0,812 NW_016690201.1 2025945 . T C 1.39937e+06 . AC=1260;AF=0.776;AN=1624;BaseQRankSum=-5.834e+00;DP=44014;ExcessHet=0.0022;FS=0.000;InbreedingCoeff=0.1395;MLEAC=1307;MLEAF=0.805;MQ=60.00;MQRankSum=0.00;QD=34.27;ReadPosRankSum=0.00;SOR=0.484 GT:AD:DP:GQ:PGT:PID:PL:PS 0|1:26,25:51:99:0|1:2025945_T_C:971,0,1016:2025945 0|1:35,19:54:99:0|1:2025945_T_C:692,0,1412:2025945 1|1:0,53:53:99:1|1:2025945_T_C:2385,160,0:2025945 1|1:0,55:56:99:1|1:2025945_T_C:2437,166,0:2025945 1|1:0,51:51:99:1|1:2025945_T_C:2295,154,0:2025945 1|1:0,51:51:99:1|1:2025945_T_C:2295,154,0:2025945 0|1:28,25:53:99:0|1:2025945_T_C:965,0,1100:2025945 0/1:29,21:50:99:.:.:445,0,753:. 1|1:0,54:54:99:1|1:2025945_T_C:2403,163,0:2025945 0|1:35,18:53:99:0|1:2025945_T_C:650,0,1415:2025945 0|1:30,21:51:99:0|1:2025945_T_C:791,0,1180:2025945 1|1:0,50:51:99:1|1:2025945_T_C:2250,151,0:2025945 1|1:0,50:50:99:1|1:2025945_T_C:2240,151,0:2025945 NW_016690201.1 2718763 . T C 86432.1 . AC=152;AF=0.094;AN=1618;BaseQRankSum=-6.287e+00;DP=38517;ExcessHet=0.0000;FS=0.000;InbreedingCoeff=0.2392;MLEAC=159;MLEAF=0.098;MQ=59.99;MQRankSum=0.00;QD=13.39;ReadPosRankSum=0.00;SOR=0.983 GT:AD:DP:GQ:PGT:PID:PL:PS 0/0:51,0:51:99:.:.:0,120,1800:. 0/1:28,22:50:99:.:.:476,0,703:. 0/0:45,0:45:99:.:.:0,116,1276:. 0/0:50,0:50:99:.:.:0,120,1800:. 1/1:0,48:48:99:.:.:1377,144,0:. 0/0:47,0:47:99:.:.:0,117,1600:. 0/0:50,0:50:99:.:.:0,120,1800:. 0/0:47,0:47:99:.:.:0,106,1302:. 0/1:26,22:48:99:.:.:444,0,626:. 0/1:26,26:52:99:.:.:582,0,639:. 0/0:48,0:48:99:.:.:0,112,1237:. 1/1:0,49:49:99:.:.:1293,147,0:. 0/0:48,0:48:99:.:.:0,107,1257:. NW_016690201.1 3882443 . A G 5944.62 . AC=10;AF=6.196e-03;AN=1614;BaseQRankSum=-4.670e+00;DP=38440;ExcessHet=0.0005;FS=0.000;InbreedingCoeff=0.5698;MLEAC=10;MLEAF=6.196e-03;MQ=60.00;MQRankSum=0.00;QD=15.52;ReadPosRankSum=0.00;SOR=1.287 GT:AD:DP:GQ:PGT:PID:PL:PS 0/0:52,0:52:99:.:.:0,120,1800:. 0/1:23,28:51:99:.:.:677,0,529:. 0/1:25,23:48:99:.:.:556,0,604:. 0/0:46,0:46:99:.:.:0,117,1413:. 0/0:50,0:50:99:.:.:0,109,1365:. 1/1:0,49:49:99:.:.:1450,146,0:. 0/0:49,0:49:99:.:.:0,99,1285:. 0/0:49,0:49:99:.:.:0,120,1322:. 0/0:49,0:49:99:.:.:0,120,1800:. 0/0:49,0:49:99:.:.:0,120,1800:. 0/0:50,0:50:99:.:.:0,111,1300:. 0/0:51,0:51:99:.:.:0,120,1800:. 0/0:48,0:48:99:.:.:0,120,1800:. NW_016690201.1 4144548 . T C 10597.3 . AC=21;AF=0.013;AN=1630;BaseQRankSum=-4.984e+00;DP=38549;ExcessHet=0.2889;FS=0.000;InbreedingCoeff=0.4009;MLEAC=22;MLEAF=0.013;MQ=60.00;MQRankSum=0.00;QD=11.05;ReadPosRankSum=0.00;SOR=0.671 GT:AD:DP:GQ:PGT:PID:PL:PS 0/0:50,0:50:99:.:.:0,120,1426:. 0/0:49,0:49:99:.:.:0,120,1800:. 0/0:48,0:48:99:.:.:0,107,1292:. 0/0:47,0:47:99:.:.:0,120,1800:. 1/1:0,49:49:99:.:.:1312,147,0:. 0/0:49,0:49:99:.:.:0,120,1800:. 0/0:48,0:48:99:.:.:0,118,1273:. 0/0:48,0:48:99:.:.:0,120,1800:. 0/1:27,22:49:99:.:.:418,0,605:. 0/0:48,0:48:99:.:.:0,120,1800:. 0/0:48,0:48:99:.:.:0,120,1286:. 0/1:30,18:48:99:.:.:336,0,715:. 0/1:29,19:48:99:.:.:375,0,688:. NW_016690201.1 4282414 . G A 684239 . AC=834;AF=0.523;AN=1594;BaseQRankSum=6.77;DP=46667;ExcessHet=0.0025;FS=2.613;InbreedingCoeff=0.1224;MLEAC=881;MLEAF=0.553;MQ=60.00;MQRankSum=0.00;QD=18.83;ReadPosRankSum=0.00;SOR=0.341 GT:AD:DP:GQ:PGT:PID:PL:PS 0/0:52,0:52:62:.:.:0,62,716:. 0/0:49,0:49:99:.:.:0,120,1800:. 0/0:49,0:49:99:.:.:0,120,1800:. 0/0:99,0:99:99:.:.:0,120,1800:. 0/0:49,0:49:99:.:.:0,120,1800:. 0/0:51,0:51:99:.:.:0,119,646:. 0/0:50,0:50:99:.:.:0,120,1800:. 0/0:50,0:50:99:.:.:0,120,1800:. 0/1:50,50:100:99:.:.:1142,0,198:. 0/1:49,49:98:99:.:.:1181,0,194:. 0/0:49,0:49:99:.:.:0,119,729:. 0/1:49,49:99:99:.:.:1115,0,195:. 0/1:49,50:99:99:.:.:1167,0,191:. NW_016690201.1 5421916 . C A 23549.5 . AC=33;AF=0.021;AN=1598;BaseQRankSum=6.76;DP=40018;ExcessHet=-0.0000;FS=13.414;InbreedingCoeff=0.6598;MLEAC=34;MLEAF=0.021;MQ=59.98;MQRankSum=0.00;QD=22.43;ReadPosRankSum=0.00;SOR=2.403 GT:AD:DP:GQ:PGT:PID:PL:PS 0/0:48,0:48:99:.:.:0,120,1800:. 0/0:49,0:49:99:.:.:0,120,1800:. 0/1:31,18:49:99:.:.:405,0,635:. 0/0:53,0:53:99:.:.:0,120,1800:. 0/0:50,0:50:99:.:.:0,111,1458:. 0/0:51,0:51:99:.:.:0,120,1800:. 0/1:31,19:50:99:.:.:415,0,648:. 1|1:0,50:50:99:1|1:5421916_C_A:2219,150,0:5421916 1|1:0,51:51:99:1|1:5421916_C_A:2295,154,0:5421916 0/1:26,23:49:99:.:.:560,0,520:. 0/0:51,0:51:99:.:.:0,120,1800:. 0/0:51,0:51:99:.:.:0,120,1800:. 0/0:51,0:51:99:.:.:0,120,1800:. NW_016690201.1 5935958 . C T 43169 . AC=70;AF=0.043;AN=1628;BaseQRankSum=6.26;DP=39250;ExcessHet=0.0000;FS=0.000;InbreedingCoeff=0.3528;MLEAC=73;MLEAF=0.045;MQ=60.00;MQRankSum=0.00;QD=14.67;ReadPosRankSum=0.00;SOR=1.070 GT:AD:DP:GQ:PGT:PID:PL:PS 0/0:49,0:49:99:.:.:0,118,1234:. 0/0:47,0:47:99:.:.:0,120,1329:. 1/1:0,50:50:99:.:.:1456,150,0:. 0/0:49,0:49:99:.:.:0,118,1278:. 0/0:46,0:46:99:.:.:0,120,1800:. 0/0:45,0:45:99:.:.:0,115,1348:. 0/0:49,0:49:99:.:.:0,120,1800:. 0/1:28,22:50:99:.:.:456,0,551:. 0/1:29,21:50:99:.:.:425,0,590:. 1/1:0,50:50:99:.:.:1322,150,0:. 1/1:0,50:50:99:.:.:1380,150,0:. 0/0:49,0:49:99:.:.:0,119,1217:. 0/0:49,0:49:99:.:.:0,120,1800:. NW_016690201.1 7077438 . G A 6363.77 . AC=7;AF=4.359e-03;AN=1606;BaseQRankSum=5.74;DP=39881;ExcessHet=0.0285;FS=0.000;InbreedingCoeff=0.5467;MLEAC=7;MLEAF=4.359e-03;MQ=60.00;MQRankSum=0.00;QD=12.53;ReadPosRankSum=0.00;SOR=0.722 GT:AD:DP:GQ:PGT:PID:PL:PS 0/0:48,0:48:99:.:.:0,107,1148:. 0/0:48,0:48:99:.:.:0,117,1262:. 0/0:49,0:49:99:.:.:0,120,1800:. 0/0:48,0:48:99:.:.:0,120,1800:. 0/0:48,0:48:99:.:.:0,120,1800:. 0/0:49,0:49:99:.:.:0,117,1339:. 0/0:50,0:50:99:.:.:0,120,1800:. 0/0:47,0:47:99:.:.:0,120,1800:. 1/1:0,50:50:99:.:.:1524,150,0:. 0/0:49,0:49:99:.:.:0,115,1323:. 0/0:49,0:49:99:.:.:0,115,1318:. 0/1:25,23:48:99:.:.:552,0,539:. 0/0:49,0:49:99:.:.:0,120,1800:. NW_016690201.1 7249406 . C T 91585.2 . AC=151;AF=0.093;AN=1630;BaseQRankSum=6.18;DP=36988;ExcessHet=0.0000;FS=0.000;InbreedingCoeff=0.2579;MLEAC=156;MLEAF=0.096;MQ=60.00;MQRankSum=0.00;QD=15.14;ReadPosRankSum=0.00;SOR=0.763 GT:AD:DP:GQ:PGT:PID:PL:PS 1/1:1,44:46:99:.:.:1369,105,0:. 0/1:28,20:48:99:.:.:499,0,676:. 0/0:48,0:48:99:.:.:0,118,1340:. 0/1:28,19:47:99:.:.:457,0,643:. 1/1:0,48:48:99:.:.:1520,144,0:. 1/1:0,46:46:99:.:.:1389,138,0:. 0/0:50,0:50:99:.:.:0,120,1800:. 1/1:1,44:45:99:.:.:1387,106,0:. 1/1:0,49:49:99:.:.:1451,146,0:. 1/1:0,46:46:99:.:.:1404,137,0:. 1/1:0,48:48:99:.:.:1440,144,0:. 0/1:27,20:47:99:.:.:460,0,1059:. 0/1:26,23:49:99:.:.:555,0,1015:. NW_016690201.1 7358731 . T C 74118.3 . AC=107;AF=0.066;AN=1628;BaseQRankSum=-6.186e+00;DP=39184;ExcessHet=0.0148;FS=0.000;InbreedingCoeff=0.2085;MLEAC=111;MLEAF=0.068;MQ=60.00;MQRankSum=0.00;QD=15.41;ReadPosRankSum=0.00;SOR=0.815 GT:AD:DP:GQ:PGT:PID:PL:PS 0/0:47,0:47:99:.:.:0,120,1800:. 0|1:26,22:48:99:0|1:7358718_C_T:846,0,1026:7358718 0|1:24,26:50:99:0|1:7358718_C_T:1014,0,929:7358718 0/0:50,0:50:99:.:.:0,120,1800:. 0/1:27,22:49:99:.:.:441,0,628:. 0/0:49,0:49:99:.:.:0,120,1800:. 1/1:0,48:48:99:.:.:1143,144,0:. 0/1:27,23:50:99:.:.:441,0,1065:. 1/1:0,48:48:99:.:.:1276,144,0:. 0|1:24,25:49:99:0|1:7358710_C_T:978,0,933:7358710 1|1:0,50:50:99:1|1:7358731_T_C:1802,150,0:7358731 1/1:0,49:49:99:.:.:1250,147,0:. 1/1:0,49:49:99:.:.:1237,146,0:. NW_016690202.1 376950 . C T 2142.59 . AC=3;AF=1.845e-03;AN=1626;BaseQRankSum=6.79;DP=38153;ExcessHet=0.0040;FS=0.000;InbreedingCoeff=0.6106;MLEAC=3;MLEAF=1.845e-03;MQ=60.00;MQRankSum=0.00;QD=21.21;ReadPosRankSum=0.00;SOR=2.572 GT:AD:DP:GQ:PL 0/0:46,0:46:99:0,120,1800 0/0:49,0:49:99:0,120,1800 0/0:48,0:48:99:0,120,1800 0/0:48,0:48:99:0,99,1285 0/0:46,0:46:99:0,119,1084 0/0:50,0:50:99:0,120,1800 0/0:48,0:48:99:0,120,1800 0/0:45,0:45:99:0,106,1211 0/0:49,0:49:99:0,120,1800 0/0:48,0:48:99:0,120,1800 0/0:48,0:48:99:0,118,1119 1/1:0,51:51:99:1539,152,0 0/1:22,28:50:99:682,0,457 NW_016690202.1 774025 . A G 67147.3 . AC=95;AF=0.060;AN=1592;BaseQRankSum=-3.226e+00;DP=38223;ExcessHet=-0.0000;FS=9.856;InbreedingCoeff=0.8446;MLEAC=101;MLEAF=0.063;MQ=60.00;MQRankSum=0.00;QD=27.32;ReadPosRankSum=0.00;SOR=5.954 GT:AD:DP:GQ:PGT:PID:PL:PS 0/0:50,0:50:99:.:.:0,116,1385:. 1/1:0,50:50:99:.:.:1470,150,0:. 0/1:26,24:50:99:.:.:564,0,685:. 1/1:0,49:49:99:.:.:1455,147,0:. 1/1:0,49:49:99:.:.:1426,147,0:. 1/1:0,50:50:99:.:.:1441,150,0:. 1/1:1,48:49:99:.:.:1272,115,0:. 1/1:1,48:49:99:.:.:1344,115,0:. 1/1:0,50:50:99:.:.:1468,150,0:. 1/1:0,50:50:99:.:.:1517,150,0:. 1/1:0,49:49:99:.:.:1409,147,0:. 1/1:0,49:49:99:.:.:1372,147,0:. 1/1:0,47:47:99:.:.:1366,141,0:. NW_016690202.1 883992 . A C 1928.63 . AC=3;AF=1.850e-03;AN=1622;BaseQRankSum=-6.642e+00;DP=38526;ExcessHet=0.0040;FS=0.000;InbreedingCoeff=0.6213;MLEAC=3;MLEAF=1.850e-03;MQ=60.00;MQRankSum=0.00;QD=19.29;ReadPosRankSum=0.00;SOR=0.848 GT:AD:DP:GQ:PL 0/0:48,0:48:99:0,120,1800 0/0:49,0:49:99:0,118,1422 0/0:49,0:49:99:0,120,1800 0/0:49,0:49:99:0,120,1800 0/0:48,0:48:99:0,120,1354 0/0:48,0:48:99:0,115,1270 0/0:48,0:48:99:0,118,1216 0/0:48,0:48:99:0,120,1800 0/1:23,27:50:99:623,0,533 0/0:49,0:49:99:0,120,1800 0/0:49,0:49:99:0,120,1800 0/0:49,0:49:99:0,117,1261 1/1:0,50:50:99:1384,150,0 NW_016690202.1 2214965 . C T 21096.3 . AC=33;AF=0.020;AN=1630;BaseQRankSum=3.11;DP=38104;ExcessHet=-0.0000;FS=0.000;InbreedingCoeff=0.7930;MLEAC=34;MLEAF=0.021;MQ=60.00;MQRankSum=0.00;QD=25.45;ReadPosRankSum=-1.010e-01;SOR=6.571 GT:AD:DP:GQ:PL 1/1:1,50:51:99:1366,129,0 1/1:2,47:49:99:1284,114,0 1/1:0,49:49:99:1368,147,0 0/0:49,0:49:99:0,115,1477 1/1:0,46:46:99:1303,138,0 0/0:48,0:48:99:0,120,1800 1/1:0,46:46:99:1208,138,0 1/1:0,51:51:99:1399,153,0 1/1:0,48:48:99:1236,142,0 1/1:0,49:49:99:1331,147,0 1/1:1,50:51:99:1402,143,0 1/1:0,49:49:99:1278,147,0 1/1:0,50:50:99:1332,150,0 NW_016690202.1 4363013 . T C 1490.46 . AC=3;AF=1.840e-03;AN=1630;BaseQRankSum=-5.266e+00;DP=38541;ExcessHet=0.0040;FS=0.000;InbreedingCoeff=0.6361;MLEAC=3;MLEAF=1.840e-03;MQ=60.00;MQRankSum=0.00;QD=15.53;ReadPosRankSum=1.06;SOR=2.160 GT:AD:DP:GQ:PL 0/0:51,0:51:99:0,106,1253 0/0:50,0:50:99:0,120,1800 0/0:49,0:49:99:0,114,1306 0/0:50,0:50:99:0,120,1800 0/0:49,0:49:99:0,120,1800 0/0:49,0:49:99:0,120,1800 0/0:49,0:49:99:0,120,1800 0/0:48,0:48:99:0,110,1291 0/1:25,24:49:99:429,0,471 0/0:49,0:49:99:0,120,1800 0/0:49,0:49:99:0,120,1265 1/1:0,47:47:99:1140,140,0 0/0:48,0:48:99:0,120,1800 NW_016690202.1 5205638 . C G 1381.68 . AC=3;AF=1.850e-03;AN=1622;BaseQRankSum=6.92;DP=38839;ExcessHet=3.0184;FS=0.000;InbreedingCoeff=0.5587;MLEAC=3;MLEAF=1.850e-03;MQ=60.00;MQRankSum=0.00;QD=9.21;ReadPosRankSum=0.00;SOR=0.406 GT:AD:DP:GQ:PL 0/0:49,0:49:99:0,120,1800 0/0:49,0:49:99:0,120,1800 0/0:48,0:48:99:0,120,1800 0/0:49,0:49:99:0,119,1412 0/1:29,21:50:99:513,0,711 0/0:50,0:50:99:0,120,1335 0/0:49,0:49:99:0,120,1800 0/1:29,21:50:99:496,0,637 0/0:50,0:50:99:0,118,1396 0/0:49,0:49:99:0,116,1329 0/1:30,20:50:99:445,0,652 0/0:49,0:49:99:0,118,1163 0/0:48,0:48:99:0,120,1800 NW_016690202.1 5288133 . T C 9839.85 . AC=17;AF=0.010;AN=1628;BaseQRankSum=-4.949e+00;DP=37923;ExcessHet=0.0000;FS=0.000;InbreedingCoeff=0.6378;MLEAC=18;MLEAF=0.011;MQ=60.00;MQRankSum=0.00;QD=18.46;ReadPosRankSum=0.00;SOR=2.352 GT:AD:DP:GQ:PL 1/1:1,47:48:99:1268,114,0 1/1:0,48:48:99:1318,144,0 0/0:48,0:48:99:0,120,1800 0/1:28,22:50:99:479,0,674 0/1:29,23:52:99:452,0,723 0/0:49,0:49:99:0,120,1800 0/1:24,25:49:99:527,0,560 0/0:46,0:46:99:0,120,1800 0/0:46,0:46:99:0,111,1282 1/1:0,49:49:99:1301,146,0 1/1:0,43:43:99:1164,129,0 0/0:46,0:46:99:0,107,1246 0/0:46,0:46:99:0,111,1242 NW_016690202.1 7207929 . A G 23205.9 . AC=33;AF=0.020;AN=1634;BaseQRankSum=2.17;DP=39892;ExcessHet=-0.0000;FS=0.000;InbreedingCoeff=0.7886;MLEAC=34;MLEAF=0.021;MQ=60.00;MQRankSum=0.00;QD=26.16;ReadPosRankSum=0.00;SOR=8.421 GT:AD:DP:GQ:PL 1/1:0,50:50:99:1501,150,0 1/1:0,52:52:99:1448,156,0 1/1:0,52:52:99:1407,155,0 1/1:0,53:53:99:1462,158,0 1/1:0,56:56:99:1556,168,0 1/1:0,50:50:99:1373,149,0 1/1:0,52:52:99:1399,156,0 0/0:50,0:50:99:0,111,1238 1/1:1,51:52:99:1388,145,0 0/0:51,0:51:99:0,120,1800 0/0:51,0:51:99:0,120,1800 1/1:0,51:51:99:1457,153,0 1/1:0,50:50:99:1365,149,0 NW_016690202.1 7286773 . C G 2807.17 . AC=6;AF=3.686e-03;AN=1628;BaseQRankSum=-4.039e+00;DP=40281;ExcessHet=0.0201;FS=3.262;InbreedingCoeff=0.5622;MLEAC=6;MLEAF=3.686e-03;MQ=60.00;MQRankSum=0.00;QD=12.70;ReadPosRankSum=0.00;SOR=1.524 GT:AD:DP:GQ:PL 0/0:52,0:52:99:0,120,1800 0/0:51,0:51:99:0,120,1800 0/0:50,0:50:99:0,120,1322 0/0:52,0:52:99:0,119,1366 0/0:52,0:52:99:0,104,1436 0/0:52,0:52:99:0,120,1800 0/0:50,0:50:99:0,120,1800 0/0:50,0:50:99:0,120,1800 1/1:0,51:51:99:1387,153,0 0/0:53,0:53:99:0,120,1800 0/0:49,0:49:99:0,120,1800 0/0:49,0:49:99:0,120,1800 0/1:30,19:49:99:376,0,755 NW_016690203.1 28439 . A G 7607.92 . 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AC=3;AF=1.836e-03;AN=1634;BaseQRankSum=1.01;DP=39383;ExcessHet=3.0183;FS=0.000;InbreedingCoeff=0.5861;MLEAC=3;MLEAF=1.836e-03;MQ=60.00;MQRankSum=0.00;QD=10.64;ReadPosRankSum=0.00;SOR=0.668 GT:AD:DP:GQ:PL 0/0:49,0:49:99:0,118,1331 0/0:48,0:48:99:0,117,705 0/1:30,20:50:99:443,0,729 0/0:48,0:48:99:0,110,1381 0/0:49,0:49:99:0,120,1800 0/0:48,0:48:99:0,99,1161 0/0:49,0:49:99:0,118,1386 0/0:49,0:49:99:0,119,1209 0/0:49,0:49:99:0,120,1800 0/1:26,29:55:99:666,0,524 0/1:23,28:51:99:623,0,505 0/0:50,0:50:99:0,115,1374 0/0:48,0:48:99:0,102,1170 NW_016690204.1 4731170 . C T 502176 . AC=587;AF=0.364;AN=1612;BaseQRankSum=6.06;DP=39405;ExcessHet=0.2055;FS=0.000;InbreedingCoeff=0.0717;MLEAC=616;MLEAF=0.382;MQ=60.00;MQRankSum=0.00;QD=21.55;ReadPosRankSum=0.00;SOR=0.301 GT:AD:DP:GQ:PGT:PID:PL:PS 1|1:1,48:49:99:1|1:4731170_C_T:2115,102,0:4731170 1|1:1,49:50:99:1|1:4731170_C_T:2160,106,0:4731170 0/0:50,0:50:99:.:.:0,120,1800:. 1|1:0,48:48:99:1|1:4731170_C_T:2151,144,0:4731170 0|1:23,24:47:99:0|1:4731170_C_T:939,0,868:4731170 1|1:0,49:49:99:1|1:4731170_C_T:2187,147,0:4731170 0/0:50,0:50:99:.:.:0,120,1800:. 1|1:0,49:50:99:1|1:4731170_C_T:2205,147,0:4731170 0/0:51,0:51:99:.:.:0,120,1800:. 0/0:46,0:46:99:.:.:0,120,1265:. 0|1:27,22:50:99:0|1:4731170_C_T:843,0,1068:4731170 0|1:29,19:48:99:0|1:4731170_C_T:711,0,1161:4731170 0/1:23,25:48:99:.:.:589,0,493:. NW_016690204.1 5523613 . A T 119626 . AC=143;AF=0.088;AN=1626;BaseQRankSum=-6.203e+00;DP=42920;ExcessHet=0.2740;FS=0.000;InbreedingCoeff=0.1391;MLEAC=149;MLEAF=0.092;MQ=60.00;MQRankSum=0.00;QD=16.51;ReadPosRankSum=0.00;SOR=1.261 GT:AD:DP:GQ:PGT:PID:PL:PS 0/0:53,0:53:99:.:.:0,120,1800:. 0/0:51,0:51:99:.:.:0,120,1800:. 0/0:50,0:50:99:.:.:0,105,1251:. 0/0:48,0:48:99:.:.:0,116,1345:. 0/1:28,23:51:99:.:.:524,0,706:. 0/1:25,23:48:99:.:.:563,0,645:. 0/0:50,0:50:99:.:.:0,120,1800:. 0/1:23,26:49:99:.:.:624,0,580:. 0/0:48,0:48:99:.:.:0,117,967:. 0/0:48,0:48:99:.:.:0,120,1800:. 0/1:19,31:50:99:.:.:709,0,413:. 0/1:22,32:54:99:.:.:708,0,495:. 0/0:49,0:49:99:.:.:0,120,1800:. NW_016690204.1 5733344 . C A 5059.67 . AC=9;AF=5.632e-03;AN=1598;BaseQRankSum=6.41;DP=38979;ExcessHet=0.0003;FS=0.000;InbreedingCoeff=0.5492;MLEAC=10;MLEAF=6.258e-03;MQ=60.00;MQRankSum=0.00;QD=15.01;ReadPosRankSum=0.00;SOR=1.369 GT:AD:DP:GQ:PL 0/1:21,29:50:99:679,0,373 0/0:50,0:50:99:0,120,1800 0/0:51,0:51:99:0,120,1800 0/0:55,0:55:99:0,120,1800 0/0:50,0:50:99:0,120,1800 0/0:50,0:50:99:0,120,1800 0/0:51,0:51:99:0,120,1800 0/0:51,0:51:99:0,120,1800 0/1:25,24:49:99:639,0,546 0/0:51,0:51:99:0,120,1800 0/0:48,0:48:99:0,120,1800 0/1:28,22:50:99:543,0,561 0/1:24,20:44:99:523,0,532 NW_016690205.1 355847 . C T 255932 . AC=371;AF=0.227;AN=1632;BaseQRankSum=5.78;DP=38686;ExcessHet=0.0045;FS=0.000;InbreedingCoeff=0.1269;MLEAC=384;MLEAF=0.235;MQ=60.00;MQRankSum=0.00;QD=16.88;ReadPosRankSum=0.00;SOR=1.276 GT:AD:DP:GQ:PGT:PID:PL:PS 0/0:50,0:50:99:.:.:0,116,1457:. 0/0:47,0:47:99:.:.:0,105,1204:. 0/1:23,26:49:99:.:.:573,0,319:. 1/1:1,49:50:99:.:.:1309,140,0:. 0/0:49,0:49:99:.:.:0,115,1340:. 0/0:48,0:48:99:.:.:0,107,1214:. 0/0:47,0:47:99:.:.:0,102,1191:. 0/0:46,0:46:99:.:.:0,99,1272:. 0/0:47,0:47:99:.:.:0,105,1194:. 0/0:49,0:49:99:.:.:0,120,1800:. 0/0:47,0:47:99:.:.:0,120,1800:. 0/0:98,0:98:99:.:.:0,120,1800:. 0/0:49,0:49:99:.:.:0,120,1800:. NW_016690205.1 1026138 . A G 1.18089e+06 . AC=975;AF=0.610;AN=1598;BaseQRankSum=-6.750e+00;DP=53056;ExcessHet=0.0000;FS=2.400;InbreedingCoeff=0.1974;MLEAC=1031;MLEAF=0.645;MQ=60.00;MQRankSum=0.00;QD=27.82;ReadPosRankSum=1.49;SOR=0.055 GT:AD:DP:GQ:PGT:PID:PL:PS 1|1:0,107:107:99:1|1:1026138_A_G:4800,322,0:1026138 0|1:33,27:60:99:0|1:1026138_A_G:809,0,1299:1026138 1|1:0,67:67:99:1|1:1026138_A_G:3015,202,0:1026138 1|1:1,60:61:99:1|1:1026138_A_G:2232,139,0:1026138 0|1:32,23:55:99:0|1:1026138_A_G:711,0,1274:1026138 1|1:0,68:68:99:1|1:1026138_A_G:3060,205,0:1026138 0|1:22,30:52:99:0|1:1026138_A_G:926,0,834:1026138 0|1:19,32:51:99:0|1:1026138_A_G:995,0,702:1026138 0/0:51,0:51:99:.:.:0,120,1800:. 0/0:51,0:51:99:.:.:0,120,1800:. 0/0:57,0:57:99:.:.:0,108,1755:. 1|1:0,50:50:99:1|1:1026138_A_G:1869,150,0:1026138 1|1:0,50:51:99:1|1:1026138_A_G:2243,151,0:1026138 NW_016690205.1 1194793 . A G 462.56 . AC=7;AF=4.279e-03;AN=1636;BaseQRankSum=-6.694e+00;DP=39222;ExcessHet=3.0663;FS=0.000;InbreedingCoeff=0.4961;MLEAC=7;MLEAF=4.279e-03;MQ=60.00;MQRankSum=0.00;QD=1.35;ReadPosRankSum=0.00;SOR=0.610 GT:AD:DP:GQ:PL 0/0:49,0:49:99:0,110,1057 0/0:50,0:50:99:0,116,1520 0/0:48,0:48:99:0,101,1233 0/0:46,0:46:99:0,112,1255 0/0:47,0:47:99:0,120,1800 0/0:48,0:48:99:0,120,1800 0/0:49,0:49:99:0,120,1552 0/1:27,23:50:80:80,0,618 0/1:33,17:50:19:19,0,773 0/0:48,0:48:99:0,117,874 0/1:20,29:49:99:142,0,441 0/0:50,0:50:99:0,104,1256 0/1:23,24:47:98:98,0,531 NW_016690205.1 2550943 . C T 189543 . AC=294;AF=0.180;AN=1634;BaseQRankSum=6.41;DP=39652;ExcessHet=0.0009;FS=0.000;InbreedingCoeff=0.1553;MLEAC=304;MLEAF=0.186;MQ=59.99;MQRankSum=0.00;QD=15.23;ReadPosRankSum=0.00;SOR=0.880 GT:AD:DP:GQ:PGT:PID:PL:PS 0/1:25,24:49:99:.:.:633,0,592:. 1/1:0,54:54:99:.:.:1748,162,0:. 1/1:0,49:49:99:.:.:1607,147,0:. 0/0:48,0:48:99:.:.:0,117,1428:. 0/1:27,24:51:99:.:.:581,0,621:. 0/1:28,21:49:99:.:.:474,0,624:. 0/0:49,0:49:99:.:.:0,109,1290:. 0/0:51,0:51:99:.:.:0,120,1800:. 0/0:49,0:49:99:.:.:0,113,1355:. 0/0:51,0:51:99:.:.:0,120,1800:. 0/0:52,0:52:99:.:.:0,115,1341:. 0/0:49,0:49:99:.:.:0,120,1800:. 0/0:49,0:49:99:.:.:0,119,1599:. NW_016690205.1 3069338 . C T 9397.27 . AC=18;AF=0.011;AN=1606;BaseQRankSum=6.27;DP=39022;ExcessHet=0.0001;FS=0.000;InbreedingCoeff=0.5178;MLEAC=19;MLEAF=0.012;MQ=60.00;MQRankSum=0.00;QD=13.92;ReadPosRankSum=0.00;SOR=1.062 GT:AD:DP:GQ:PL 0/1:29,19:48:99:421,0,658 1/1:0,49:49:99:1358,147,0 0/1:24,24:48:99:566,0,518 0/1:22,27:49:99:610,0,442 0/0:51,0:51:99:0,120,1800 0/0:51,0:51:99:0,120,1800 0/0:49,0:49:99:0,120,1800 0/0:49,0:49:99:0,120,1800 0/1:23,25:48:99:619,0,494 0/0:51,0:51:99:0,120,1800 0/1:30,16:46:99:354,0,696 0/0:54,0:54:99:0,120,1800 0/1:33,15:48:99:312,0,743 NW_016690205.1 4180349 . T G 8982.47 . AC=16;AF=9.852e-03;AN=1624;BaseQRankSum=-6.047e+00;DP=39782;ExcessHet=0.1635;FS=0.000;InbreedingCoeff=0.4522;MLEAC=17;MLEAF=0.010;MQ=60.00;MQRankSum=0.00;QD=12.22;ReadPosRankSum=0.00;SOR=0.793 GT:AD:DP:GQ:PGT:PID:PL:PS 1/1:0,48:48:99:.:.:1350,144,0:. 0/1:20,30:50:99:.:.:706,0,445:. 0/1:25,24:49:99:.:.:543,0,597:. 0/0:50,0:50:99:.:.:0,120,1800:. 0/1:24,25:49:99:.:.:547,0,567:. 0/0:49,0:49:99:.:.:0,120,930:. 0/1:19,29:48:99:.:.:630,0,402:. 0/0:49,0:49:99:.:.:0,120,1800:. 0/0:46,0:46:99:.:.:0,117,1269:. 0/0:49,0:49:99:.:.:0,120,1800:. 0/0:49,0:49:99:.:.:0,120,1800:. 0/0:47,0:47:99:.:.:0,106,1129:. 0/1:27,23:50:99:.:.:479,0,677:. NW_016690205.1 4476522 . T C 12876.9 . AC=23;AF=0.014;AN=1624;BaseQRankSum=-5.840e+00;DP=38441;ExcessHet=0.3521;FS=0.000;InbreedingCoeff=0.3835;MLEAC=23;MLEAF=0.014;MQ=60.00;MQRankSum=0.00;QD=12.25;ReadPosRankSum=0.751;SOR=0.654 GT:AD:DP:GQ:PGT:PID:PL:PS 0/1:30,20:50:99:.:.:346,0,654:. 0/1:31,17:48:99:.:.:276,0,688:. 0/0:49,0:49:99:.:.:0,115,1367:. 0/1:26,24:50:99:.:.:429,0,1003:. 0/0:46,0:46:99:.:.:0,114,1279:. 0/1:27,20:47:99:.:.:353,0,540:. 0/1:20,30:50:99:.:.:562,0,365:. 0/0:49,0:49:99:.:.:0,118,1345:. 0/0:47,0:47:99:.:.:0,104,1214:. 0/0:48,0:48:99:.:.:0,114,1247:. 0|1:20,22:42:99:1|0:4476478_A_G:418,0,774:4476478 0/0:48,0:48:99:.:.:0,120,1800:. 0/0:50,0:50:99:.:.:0,120,1800:. NW_016690206.1 40884 . C T 11126.8 . AC=22;AF=0.014;AN=1624;BaseQRankSum=5.98;DP=38292;ExcessHet=0.0000;FS=0.000;InbreedingCoeff=0.5577;MLEAC=23;MLEAF=0.014;MQ=60.00;MQRankSum=0.00;QD=14.32;ReadPosRankSum=0.00;SOR=0.730 GT:AD:DP:GQ:PL 0/1:23,24:47:99:541,0,400 0/0:47,0:47:99:0,120,1427 0/1:28,23:51:99:525,0,535 0/0:47,0:47:99:0,107,1168 0/0:47,0:47:99:0,109,1266 1/1:0,47:47:99:1345,141,0 0/1:28,20:48:99:426,0,454 0/1:21,25:46:99:545,0,339 0/0:48,0:48:99:0,106,1241 0/1:23,25:48:99:538,0,111 0/1:26,19:45:99:387,0,457 0/0:52,0:52:99:0,102,1297 0/0:45,0:45:99:0,108,1420 NW_016690206.1 855711 . C T 2900.61 . AC=5;AF=3.177e-03;AN=1574;BaseQRankSum=5.88;DP=35191;ExcessHet=0.0138;FS=0.000;InbreedingCoeff=0.5248;MLEAC=5;MLEAF=3.177e-03;MQ=60.00;MQRankSum=0.00;QD=15.94;ReadPosRankSum=0.00;SOR=1.434 GT:AD:DP:GQ:PL 0/0:49,0:49:99:0,114,1178 0/0:49,0:49:99:0,120,1800 0/0:47,0:47:99:0,120,1800 0/0:48,0:48:99:0,120,1800 0/0:48,0:48:99:0,119,1270 0/0:46,0:46:99:0,111,1382 0/0:47,0:47:99:0,120,1170 0/0:48,0:48:99:0,120,1800 0/1:20,27:47:99:657,0,412 1/1:0,49:49:99:1438,147,0 0/1:28,19:47:99:407,0,606 0/0:43,0:43:99:0,108,1439 0/1:17,22:39:99:512,0,337 NW_016690206.1 1430130 . C A 28827.4 . AC=51;AF=0.031;AN=1626;BaseQRankSum=2.09;DP=38706;ExcessHet=0.1014;FS=0.000;InbreedingCoeff=0.2731;MLEAC=53;MLEAF=0.033;MQ=59.99;MQRankSum=0.00;QD=11.77;ReadPosRankSum=0.00;SOR=0.432 GT:AD:DP:GQ:PL 0/1:27,25:52:99:533,0,588 0/0:51,0:51:99:0,113,1305 0/0:50,0:50:99:0,110,1393 0/0:49,0:49:99:0,113,1398 0/0:55,0:55:99:0,120,1800 0/0:40,0:40:99:0,117,1070 0/0:48,0:48:99:0,113,1389 0/0:49,0:49:99:0,106,1413 1/1:0,51:51:99:1457,153,0 0/0:50,0:50:99:0,120,1800 0/1:25,26:51:99:612,0,542 1/1:0,51:51:99:1457,153,0 0/1:24,24:48:99:543,0,484 NW_016690206.1 1807163 . G T 537286 . AC=793;AF=0.489;AN=1622;BaseQRankSum=3.29;DP=38695;ExcessHet=0.0000;FS=0.000;InbreedingCoeff=0.2574;MLEAC=826;MLEAF=0.509;MQ=60.00;MQRankSum=0.00;QD=20.18;ReadPosRankSum=0.00;SOR=0.799 GT:AD:DP:GQ:PGT:PID:PL:PS 0/0:48,0:48:99:.:.:0,120,1800:. 1/1:0,47:47:99:.:.:1305,141,0:. 1/1:0,46:46:99:.:.:1291,138,0:. 0/0:47,0:47:99:.:.:0,118,1456:. 0/1:24,24:48:99:.:.:503,0,443:. 0/0:49,0:49:99:.:.:0,120,1800:. 1/1:0,48:48:99:.:.:1372,144,0:. 0/0:48,0:48:99:.:.:0,107,1271:. 0/0:47,0:47:99:.:.:0,111,685:. 0/0:50,0:50:99:.:.:0,120,1067:. 0/0:49,0:49:99:.:.:0,120,1800:. 0/0:49,0:49:99:.:.:0,120,1800:. 0/0:46,0:46:99:.:.:0,120,1800:. NW_016690206.1 2772225 . A T 5077.97 . AC=7;AF=4.321e-03;AN=1620;BaseQRankSum=-6.296e+00;DP=39561;ExcessHet=0.0283;FS=0.000;InbreedingCoeff=0.5644;MLEAC=7;MLEAF=4.321e-03;MQ=60.00;MQRankSum=0.00;QD=17.04;ReadPosRankSum=0.00;SOR=1.148 GT:AD:DP:GQ:PGT:PID:PL:PS 0|1:29,21:50:99:0|1:2772225_A_T:450,0,745:2772225 0/1:16,34:50:99:.:.:871,0,390:. 0/0:50,0:50:99:.:.:0,120,1800:. 0/0:49,0:49:99:.:.:0,120,1800:. 0/0:49,0:49:99:.:.:0,119,1359:. 0|1:24,25:49:99:0|1:2772225_A_T:592,0,635:2772225 0/0:49,0:49:99:.:.:0,120,1800:. 0/0:49,0:49:99:.:.:0,116,1245:. 0/0:50,0:50:99:.:.:0,120,1352:. 0/0:47,0:47:99:.:.:0,115,1461:. 0/0:50,0:50:99:.:.:0,120,1800:. 0/0:49,0:49:99:.:.:0,120,1800:. 0/0:50,0:50:99:.:.:0,120,1800:. NW_016690206.1 4243582 . T C 7079.76 . AC=12;AF=7.380e-03;AN=1626;BaseQRankSum=-6.811e+00;DP=38873;ExcessHet=0.0000;FS=0.000;InbreedingCoeff=0.5710;MLEAC=12;MLEAF=7.380e-03;MQ=60.00;MQRankSum=0.00;QD=15.84;ReadPosRankSum=0.00;SOR=1.572 GT:AD:DP:GQ:PL 0/0:50,0:50:99:0,108,1341 1/1:0,48:48:99:1314,144,0 0/1:18,32:50:99:736,0,384 1/1:0,50:50:99:1389,150,0 0/0:49,0:49:99:0,120,1800 0/0:49,0:49:99:0,120,1800 0/1:26,24:50:99:521,0,648 0/0:49,0:49:99:0,109,1218 0/0:48,0:48:99:0,115,1296 0/0:49,0:49:99:0,108,1157 0/1:26,24:50:99:512,0,623 0/0:49,0:49:99:0,120,1800 0/0:48,0:48:99:0,118,1275 NW_016690206.1 4402102 . T C 1377.71 . AC=3;AF=1.852e-03;AN=1620;BaseQRankSum=-5.251e+00;DP=39212;ExcessHet=3.0184;FS=0.000;InbreedingCoeff=0.5697;MLEAC=3;MLEAF=1.852e-03;MQ=60.00;MQRankSum=0.00;QD=9.25;ReadPosRankSum=0.00;SOR=0.504 GT:AD:DP:GQ:PL 0/0:50,0:50:99:0,118,1371 0/0:48,0:48:99:0,99,1311 0/0:46,0:46:99:0,115,1383 0/0:49,0:49:99:0,120,1800 0/0:51,0:51:99:0,120,1800 0/0:49,0:49:99:0,120,1800 0/0:49,0:49:99:0,120,1299 0/1:28,20:48:99:420,0,688 0/0:49,0:49:99:0,104,1326 0/1:25,28:54:99:654,0,602 0/1:30,18:48:99:376,0,778 0/0:49,0:49:99:0,120,1800 0/0:49,0:49:99:0,120,1800 NW_016690206.1 5286858 . G T 5761.23 . AC=8;AF=5.006e-03;AN=1598;BaseQRankSum=6.60;DP=41925;ExcessHet=0.0382;FS=0.000;InbreedingCoeff=0.5634;MLEAC=8;MLEAF=5.006e-03;MQ=60.00;MQRankSum=0.00;QD=16.32;ReadPosRankSum=0.138;SOR=1.054 GT:AD:DP:GQ:PGT:PID:PL:PS 0/1:27,24:51:99:.:.:559,0,116:. 0/1:28,24:52:99:.:.:539,0,123:. 1|1:0,51:51:99:1|1:5286848_T_A:2295,154,0:5286848 0/0:54,0:54:99:.:.:0,120,1800:. 0/0:53,0:53:99:.:.:0,120,1800:. 0/0:58,0:58:99:.:.:0,120,1800:. 0/0:52,0:52:99:.:.:0,120,1800:. 0/0:51,0:51:99:.:.:0,118,1512:. 0/0:50,0:50:99:.:.:0,120,1800:. 0/0:50,0:50:99:.:.:0,104,1320:. 0/0:54,0:54:99:.:.:0,120,1800:. 0/1:24,27:51:99:.:.:623,0,367:. 0/0:49,0:49:99:.:.:0,101,1339:. NW_016690206.1 5687275 . G A 338339 . AC=360;AF=0.221;AN=1628;BaseQRankSum=4.69;DP=39326;ExcessHet=0.0000;FS=0.000;InbreedingCoeff=0.2304;MLEAC=374;MLEAF=0.230;MQ=60.00;MQRankSum=0.00;QD=23.67;ReadPosRankSum=0.00;SOR=0.799 GT:AD:DP:GQ:PGT:PID:PL:PS 1|1:1,49:50:99:1|1:5687265_G_A:2129,106,0:5687265 0|1:33,17:50:99:0|1:5687265_G_A:366,0,744:5687265 0|1:25,25:50:99:0|1:5687265_G_A:553,0,553:5687265 0|1:27,23:50:99:0|1:5687265_G_A:503,0,569:5687265 0|1:24,26:50:99:0|1:5687265_G_A:618,0,454:5687265 0/0:48,0:48:99:.:.:0,117,1315:. 0/0:47,0:47:99:.:.:0,110,1426:. 0/0:48,0:48:99:.:.:0,120,1307:. 0|1:27,22:49:99:0|1:5687265_G_A:534,0,601:5687265 0/0:49,0:49:99:.:.:0,120,1800:. 0/0:49,0:49:99:.:.:0,120,1800:. 0/0:50,0:50:99:.:.:0,120,1800:. 0/0:49,0:49:99:.:.:0,120,1800:. NW_016690206.1 6308988 . G T 236668 . AC=348;AF=0.223;AN=1564;BaseQRankSum=-3.240e-01;DP=39458;ExcessHet=-0.0000;FS=1.457;InbreedingCoeff=0.4143;MLEAC=380;MLEAF=0.243;MQ=60.00;MQRankSum=0.00;QD=18.48;ReadPosRankSum=0.00;SOR=1.193 GT:AD:DP:GQ:PGT:PID:PL:PS 1/1:0,48:48:99:.:.:1428,144,0:. 1/1:0,49:49:99:.:.:1458,147,0:. 1/1:0,49:49:99:.:.:1405,147,0:. 1/1:0,48:48:99:.:.:1428,144,0:. 1/1:0,49:49:99:.:.:1431,147,0:. 0/1:24,25:49:99:.:.:572,0,933:. 1/1:0,50:50:99:.:.:1438,150,0:. 0/1:31,18:49:99:.:.:370,0,769:. 1/1:1,44:46:99:.:.:1279,105,0:. 0/0:50,0:50:0:.:.:0,0,536:. 0/1:22,27:49:99:.:.:652,0,517:. 1/1:0,50:50:99:.:.:1486,150,0:. 1/1:0,49:49:99:.:.:1408,147,0:. NW_016690208.1 2934049 . G A 70969.2 . AC=120;AF=0.074;AN=1628;BaseQRankSum=5.45;DP=39233;ExcessHet=0.0240;FS=0.000;InbreedingCoeff=0.1828;MLEAC=124;MLEAF=0.076;MQ=60.00;MQRankSum=0.00;QD=12.16;ReadPosRankSum=0.00;SOR=0.733 GT:AD:DP:GQ:PGT:PID:PL:PS 0/0:49,0:49:99:.:.:0,120,1454:. 0/0:45,0:45:99:.:.:0,101,997:. 0/0:47,0:47:99:.:.:0,117,1259:. 0/0:46,0:46:99:.:.:0,120,1800:. 0/0:48,0:48:99:.:.:0,118,1253:. 0/0:46,0:46:99:.:.:0,120,1800:. 0/1:31,19:50:99:.:.:363,0,598:. 0/0:48,0:48:99:.:.:0,120,1800:. 1/1:0,49:49:99:.:.:1334,147,0:. 0/0:45,0:45:99:.:.:0,110,958:. 0/0:49,0:49:99:.:.:0,118,1151:. 0/0:46,0:46:99:.:.:0,113,1383:. 0/0:49,0:49:99:.:.:0,118,1515:. NW_016690208.1 4895557 . G A 270991 . AC=293;AF=0.182;AN=1612;BaseQRankSum=6.66;DP=39558;ExcessHet=0.0194;FS=0.000;InbreedingCoeff=0.1335;MLEAC=306;MLEAF=0.190;MQ=60.00;MQRankSum=0.00;QD=21.28;ReadPosRankSum=0.00;SOR=0.797 GT:AD:DP:GQ:PGT:PID:PL:PS 1|1:0,50:50:99:1|1:4895540_C_T:2250,151,0:4895540 1|1:0,49:49:99:1|1:4895540_C_T:2205,147,0:4895540 1|1:0,50:50:99:1|1:4895540_C_T:2250,151,0:4895540 1|1:0,49:50:99:1|1:4895540_C_T:2205,147,0:4895540 0/0:49,0:49:99:.:.:0,120,1800:. 1|1:0,50:50:99:1|1:4895540_C_T:2250,151,0:4895540 0/0:49,0:49:99:.:.:0,120,1800:. 0|1:26,24:50:99:0|1:4895548_G_A:929,0,1019:4895548 0|1:29,21:50:99:0|1:4895548_G_A:779,0,1154:4895548 1|1:0,49:49:99:1|1:4895540_C_T:2205,147,0:4895540 1|1:0,46:48:99:1|1:4895540_C_T:2070,138,0:4895540 1|1:0,49:49:99:1|1:4895540_C_T:2205,147,0:4895540 0|1:29,18:47:99:0|1:4895548_G_A:669,0,1164:4895548 NW_016690209.1 22702 . T G 34421.6 . AC=34;AF=0.021;AN=1620;BaseQRankSum=-6.437e+00;DP=31868;ExcessHet=0.0000;FS=0.000;InbreedingCoeff=0.7231;MLEAC=36;MLEAF=0.022;MQ=60.00;MQRankSum=0.00;QD=32.35;ReadPosRankSum=0.00;SOR=4.316 GT:AD:DP:GQ:PGT:PID:PL:PS 1|1:0,48:48:99:1|1:22702_T_G:2149,144,0:22702 0/0:50,0:50:99:.:.:0,120,1800:. 0|1:24,25:49:99:0|1:22702_T_G:566,0,590:22702 1|1:0,48:48:99:1|1:22702_T_G:2160,144,0:22702 0/1:23,27:50:99:.:.:599,0,534:. 1|1:0,50:50:99:1|1:22702_T_G:2199,150,0:22702 1|1:0,46:46:99:1|1:22702_T_G:2070,138,0:22702 1|1:0,32:32:96:1|1:22702_T_G:1440,96,0:22702 1|1:0,53:53:99:1|1:22702_T_G:2385,160,0:22702 1|1:0,52:52:99:1|1:22702_T_G:2322,157,0:22702 1|1:0,52:52:99:1|1:22702_T_G:2319,157,0:22702 1|1:0,51:51:99:1|1:22702_T_G:2276,154,0:22702 1|1:0,51:51:99:1|1:22702_T_G:2284,154,0:22702 NW_016690209.1 225385 . G A 11681.3 . AC=19;AF=0.012;AN=1616;BaseQRankSum=4.00;DP=38968;ExcessHet=0.0095;FS=2.139;InbreedingCoeff=0.4711;MLEAC=20;MLEAF=0.012;MQ=60.00;MQRankSum=0.00;QD=14.18;ReadPosRankSum=0.00;SOR=1.172 GT:AD:DP:GQ:PGT:PID:PL:PS 0/0:60,0:60:99:.:.:0,117,1556:. 1/1:0,42:42:99:.:.:1142,125,0:. 0/0:48,0:48:99:.:.:0,118,1243:. 0/0:48,0:48:99:.:.:0,120,1800:. 0/0:45,0:45:99:.:.:0,120,1800:. 0/0:42,0:42:99:.:.:0,120,1800:. 0/0:51,0:51:99:.:.:0,116,1312:. 0|1:28,20:48:99:0|1:225385_G_A:756,0,1116:225385 0/0:46,0:46:99:.:.:0,120,1800:. 0/0:51,0:51:99:.:.:0,120,1800:. 0/0:46,0:46:99:.:.:0,120,1800:. 0/0:50,0:50:99:.:.:0,104,1334:. 0/0:48,0:48:99:.:.:0,108,1490:. NW_016690209.1 777613 . A T 12878.5 . AC=15;AF=9.191e-03;AN=1632;BaseQRankSum=5.59;DP=38136;ExcessHet=0.1421;FS=0.000;InbreedingCoeff=0.4406;MLEAC=16;MLEAF=9.804e-03;MQ=60.00;MQRankSum=0.00;QD=19.75;ReadPosRankSum=0.00;SOR=0.984 GT:AD:DP:GQ:PGT:PID:PL:PS 0|1:14,31:45:99:0|1:777613_A_T:1252,0,487:777613 0/0:46,0:46:99:.:.:0,100,1369:. 0|1:24,23:47:99:0|1:777613_A_T:894,0,932:777613 0/0:48,0:48:99:.:.:0,110,1391:. 0|1:14,35:49:99:0|1:777613_A_T:1421,0,476:777613 0/0:49,0:49:99:.:.:0,116,1458:. 0/0:49,0:49:99:.:.:0,120,1800:. 0/1:24,22:46:99:.:.:569,0,553:. 0/0:48,0:48:99:.:.:0,115,1188:. 0/1:20,25:45:99:.:.:656,0,435:. 0/0:47,0:47:99:.:.:0,111,1213:. 0/0:49,0:49:99:.:.:0,100,1402:. 0/0:49,0:49:99:.:.:0,109,1251:. NW_016690209.1 3494459 . T C 3779.4 . AC=5;AF=3.075e-03;AN=1626;BaseQRankSum=-6.250e+00;DP=39056;ExcessHet=3.0371;FS=0.000;InbreedingCoeff=0.5284;MLEAC=5;MLEAF=3.075e-03;MQ=60.00;MQRankSum=0.00;QD=12.19;ReadPosRankSum=-8.890e-01;SOR=0.551 GT:AD:DP:GQ:PGT:PID:PL:PS 0/0:53,0:53:99:.:.:0,120,1800:. 0/0:49,0:49:99:.:.:0,120,1446:. 0/0:39,0:39:99:.:.:0,102,1054:. 0/0:48,0:48:99:.:.:0,120,1800:. 0/0:36,0:36:99:.:.:0,108,959:. 0/0:51,0:51:99:.:.:0,120,1800:. 0/0:50,0:50:99:.:.:0,120,1800:. 0/1:27,30:57:99:.:.:722,0,708:. 0/1:28,31:59:99:.:.:744,0,764:. 0/0:49,0:49:99:.:.:0,120,1800:. 0/0:52,0:52:99:.:.:0,120,1800:. 0/0:51,0:51:99:.:.:0,120,1800:. 0/1:33,22:55:99:.:.:508,0,925:. NW_016690209.1 3973948 . T C 59766.8 . AC=116;AF=0.072;AN=1616;BaseQRankSum=-6.044e+00;DP=39178;ExcessHet=0.0000;FS=0.000;InbreedingCoeff=0.6918;MLEAC=121;MLEAF=0.075;MQ=60.00;MQRankSum=0.00;QD=17.25;ReadPosRankSum=0.00;SOR=0.746 GT:AD:DP:GQ:PGT:PID:PL:PS 0/0:50,0:50:99:.:.:0,120,1800:. 0/0:50,0:50:99:.:.:0,120,1487:. 0/0:48,0:48:99:.:.:0,120,1800:. 0/1:26,23:49:95:.:.:95,0,541:. 1/1:1,48:49:99:.:.:472,100,0:. 0/1:25,24:49:99:.:.:399,0,527:. 0/0:49,0:49:99:.:.:0,120,1800:. 0/1:25,24:49:99:.:.:422,0,555:. 0/1:23,26:49:99:.:.:126,0,502:. 0/1:23,26:49:99:.:.:469,0,511:. 0/0:50,0:50:99:.:.:0,120,1800:. 0/0:48,0:48:99:.:.:0,113,1532:. 0|1:30,19:49:99:0|1:3973948_T_C:708,0,1195:3973948 NW_016690209.1 4901080 . C T 95757.1 . AC=117;AF=0.072;AN=1630;BaseQRankSum=5.36;DP=39721;ExcessHet=0.0000;FS=0.000;InbreedingCoeff=0.5109;MLEAC=121;MLEAF=0.074;MQ=60.00;MQRankSum=0.00;QD=21.07;ReadPosRankSum=0.00;SOR=0.613 GT:AD:DP:GQ:PGT:PID:PL:PS 0/0:49,0:49:99:.:.:0,118,1395:. 0|1:20,27:47:99:0|1:4901080_C_T:1074,0,759:4901080 0/0:50,0:50:99:.:.:0,120,1800:. 1/1:0,50:50:99:.:.:1526,150,0:. 0/1:23,26:49:99:.:.:669,0,517:. 0|1:17,31:48:99:0|1:4901080_C_T:803,0,621:4901080 0/0:49,0:49:99:.:.:0,120,1800:. 1/1:0,50:50:99:.:.:1521,150,0:. 0/1:25,24:49:99:.:.:564,0,541:. 0/1:29,18:47:99:.:.:384,0,637:. 0|1:31,18:49:99:0|1:4901080_C_T:402,0,1248:4901080 0|1:19,30:49:99:0|1:4901080_C_T:763,0,708:4901080 0/1:22,27:49:99:.:.:674,0,450:. NW_016690209.1 4986174 . G A 7921.29 . AC=14;AF=8.568e-03;AN=1634;BaseQRankSum=5.77;DP=40427;ExcessHet=0.0000;FS=0.000;InbreedingCoeff=0.5910;MLEAC=15;MLEAF=9.180e-03;MQ=60.00;MQRankSum=0.00;QD=16.30;ReadPosRankSum=0.00;SOR=2.046 GT:AD:DP:GQ:PGT:PID:PL:PS 0/0:52,0:52:99:.:.:0,120,1800:. 0/1:23,27:50:80:.:.:548,0,80:. 0/0:50,0:50:99:.:.:0,104,707:. 0/0:50,0:50:99:.:.:0,120,1800:. 1/1:0,47:47:99:.:.:1172,140,0:. 0/1:19,30:49:71:.:.:602,0,71:. 0/0:46,0:46:99:.:.:0,99,1158:. 0/0:48,0:48:99:.:.:0,113,1190:. 1/1:0,48:48:99:.:.:1241,144,0:. 0/0:51,0:51:99:.:.:0,120,1800:. 0/0:53,0:53:99:.:.:0,120,1800:. 0/1:20,27:47:99:.:.:575,0,301:. 0/1:25,24:49:99:.:.:495,0,140:. NW_016690209.1 5336750 . G A 2247.21 . AC=4;AF=2.448e-03;AN=1634;BaseQRankSum=6.35;DP=40741;ExcessHet=3.0263;FS=0.000;InbreedingCoeff=0.5437;MLEAC=4;MLEAF=2.448e-03;MQ=60.00;MQRankSum=0.00;QD=11.29;ReadPosRankSum=0.00;SOR=0.765 GT:AD:DP:GQ:PL 0/0:51,0:51:99:0,101,1154 0/0:50,0:50:99:0,118,1391 0/0:49,0:49:99:0,120,1800 0/0:50,0:50:99:0,105,1047 0/0:50,0:50:99:0,112,1470 0/0:49,0:49:99:0,116,1474 0/0:50,0:50:99:0,106,1345 0/1:20,30:50:99:694,0,377 0/0:49,0:49:99:0,119,1353 0/1:23,26:49:99:593,0,451 0/0:50,0:50:99:0,120,1800 0/1:28,22:50:99:486,0,590 0/1:25,25:50:99:566,0,518 NW_016690210.1 446055 . T C 278611 . AC=464;AF=0.286;AN=1620;BaseQRankSum=-5.214e+00;DP=38143;ExcessHet=0.0000;FS=0.000;InbreedingCoeff=0.2569;MLEAC=484;MLEAF=0.299;MQ=60.00;MQRankSum=0.00;QD=16.25;ReadPosRankSum=0.00;SOR=0.696 GT:AD:DP:GQ:PGT:PID:PL:PS 0/0:48,0:48:99:.:.:0,120,1800:. 0/1:22,29:51:99:.:.:608,0,458:. 0/0:47,0:47:99:.:.:0,120,1800:. 1/1:0,49:49:99:.:.:1261,147,0:. 1/1:0,50:50:99:.:.:1238,149,0:. 0/0:49,0:49:99:.:.:0,119,1470:. 0/0:47,0:47:99:.:.:0,111,1179:. 0/0:46,0:46:99:.:.:0,120,1800:. 0/0:48,0:48:99:.:.:0,100,1243:. 0/0:48,0:48:99:.:.:0,110,1523:. 1/1:0,49:49:99:.:.:1239,147,0:. 0/0:49,0:49:99:.:.:0,105,1368:. 0/0:48,0:48:99:.:.:0,112,1077:. NW_016690210.1 717093 . T C 12802.4 . AC=21;AF=0.013;AN=1620;BaseQRankSum=-2.026e+00;DP=39629;ExcessHet=0.2908;FS=0.000;InbreedingCoeff=0.4226;MLEAC=22;MLEAF=0.014;MQ=60.00;MQRankSum=0.00;QD=12.10;ReadPosRankSum=0.00;SOR=0.712 GT:AD:DP:GQ:PGT:PID:PL:PS 0/0:51,0:51:99:.:.:0,120,1800:. 0/0:50,0:50:99:.:.:0,120,1800:. 0/0:51,0:51:99:.:.:0,107,1248:. 0/0:53,0:53:99:.:.:0,116,1388:. 0/1:23,26:49:99:.:.:579,0,524:. 0/0:49,0:49:99:.:.:0,120,1800:. 0/1:22,26:48:99:.:.:531,0,460:. 0/0:51,0:51:99:.:.:0,120,1800:. 0/0:50,0:50:99:.:.:0,112,1404:. 1/1:0,49:49:99:.:.:1296,147,0:. 0/1:27,21:48:99:.:.:405,0,625:. 0/0:52,0:52:99:.:.:0,110,1384:. 0/0:52,0:52:99:.:.:0,120,1800:. NW_016690210.1 1388477 . T G 238574 . AC=308;AF=0.190;AN=1622;BaseQRankSum=-5.546e+00;DP=36013;ExcessHet=0.0000;FS=3.213;InbreedingCoeff=0.1846;MLEAC=319;MLEAF=0.197;MQ=59.99;MQRankSum=0.00;QD=20.88;ReadPosRankSum=0.00;SOR=1.866 GT:AD:DP:GQ:PGT:PID:PL:PS 1|1:0,47:47:99:1|1:1388477_T_G:2115,141,0:1388477 0|1:23,25:48:99:0|1:1388477_T_G:981,0,891:1388477 1|1:0,48:48:99:1|1:1388477_T_G:2160,144,0:1388477 1|1:0,46:46:99:1|1:1388477_T_G:2070,138,0:1388477 0|1:27,18:45:99:0|1:1388477_T_G:675,0,1080:1388477 1|1:0,48:48:99:1|1:1388477_T_G:2160,144,0:1388477 1|1:0,46:46:99:1|1:1388477_T_G:2070,138,0:1388477 0|1:21,29:50:99:0|1:1388477_T_G:1154,0,794:1388477 0|1:31,18:49:99:0|1:1388477_T_G:663,0,1248:1388477 0/0:50,0:50:99:.:.:0,120,1800:. 0|1:25,21:46:99:0|1:1388477_T_G:807,0,987:1388477 1|1:0,50:50:99:1|1:1388477_T_G:2250,151,0:1388477 1|1:0,48:48:99:1|1:1388477_T_G:2160,144,0:1388477 NW_016690210.1 1604725 . C T 153844 . AC=230;AF=0.142;AN=1622;BaseQRankSum=5.98;DP=38973;ExcessHet=-0.0000;FS=0.000;InbreedingCoeff=0.3503;MLEAC=240;MLEAF=0.148;MQ=60.00;MQRankSum=0.00;QD=17.52;ReadPosRankSum=0.00;SOR=0.847 GT:AD:DP:GQ:PGT:PID:PL:PS 0/0:49,0:49:99:.:.:0,120,1800:. 0/0:49,0:49:99:.:.:0,120,1800:. 0/0:50,0:50:99:.:.:0,120,1800:. 0/1:34,14:48:99:.:.:298,0,862:. 1/1:0,50:50:99:.:.:1584,150,0:. 1/1:0,49:49:99:.:.:1532,147,0:. 0/1:34,15:49:99:.:.:329,0,859:. 1/1:0,50:50:99:.:.:1623,150,0:. 0/1:28,22:50:99:.:.:581,0,707:. 1/1:0,48:49:99:.:.:1565,144,0:. 0/1:37,11:48:99:.:.:215,0,952:. 1/1:0,49:49:99:.:.:1599,147,0:. 0/0:49,0:49:99:.:.:0,120,1800:. NW_016690210.1 3181098 . C T 2914.68 . AC=7;AF=4.300e-03;AN=1628;BaseQRankSum=6.55;DP=38683;ExcessHet=3.0665;FS=0.000;InbreedingCoeff=0.5010;MLEAC=7;MLEAF=4.300e-03;MQ=60.00;MQRankSum=0.00;QD=8.86;ReadPosRankSum=0.00;SOR=0.629 GT:AD:DP:GQ:PL 0/0:48,0:48:99:0,120,1800 0/0:49,0:49:99:0,120,1800 0/0:49,0:49:99:0,119,1228 0/0:49,0:49:99:0,120,1800 0/0:49,0:49:99:0,120,1800 0/1:21,28:49:75:612,0,75 0/0:50,0:50:99:0,120,1800 0/1:21,28:49:99:650,0,350 0/0:49,0:49:99:0,120,1800 0/1:27,23:50:99:502,0,467 0/0:49,0:49:99:0,118,1472 0/0:48,0:48:99:0,119,1315 0/0:49,0:49:99:0,118,1079 NW_016690210.1 3429513 . T C 111784 . AC=199;AF=0.122;AN=1628;BaseQRankSum=-6.622e+00;DP=39630;ExcessHet=-0.0000;FS=0.000;InbreedingCoeff=0.4327;MLEAC=206;MLEAF=0.127;MQ=60.00;MQRankSum=0.00;QD=14.86;ReadPosRankSum=0.00;SOR=1.417 GT:AD:DP:GQ:PGT:PID:PL:PS 0/0:47,0:47:99:.:.:0,112,1331:. 0/1:26,24:50:99:.:.:397,0,597:. 0/0:50,0:50:99:.:.:0,120,1800:. 0/0:48,0:48:99:.:.:0,120,1446:. 0/1:29,20:49:99:.:.:310,0,660:. 0/0:49,0:49:99:.:.:0,116,1505:. 0/0:49,0:49:99:.:.:0,120,1800:. 0/0:49,0:49:99:.:.:0,120,1800:. 0/0:50,0:50:99:.:.:0,120,1800:. 0/1:23,26:50:99:.:.:446,0,510:. 0/0:49,0:49:99:.:.:0,120,1336:. 0/0:49,0:49:99:.:.:0,120,1800:. 0/0:50,0:50:99:.:.:0,120,1800:. NW_016690210.1 4181665 . A G 413606 . AC=467;AF=0.296;AN=1580;BaseQRankSum=-6.591e+00;DP=40824;ExcessHet=0.0000;FS=0.000;InbreedingCoeff=0.2685;MLEAC=534;MLEAF=0.338;MQ=59.99;MQRankSum=0.00;QD=23.59;ReadPosRankSum=0.00;SOR=0.409 GT:AD:DP:GQ:PGT:PID:PL:PS 1|1:0,51:51:99:1|1:4181652_C_T:2295,154,0:4181652 1|1:0,26:26:78:1|1:4181638_G_A:1170,78,0:4181638 1|1:0,46:46:99:1|1:4181652_C_T:2070,138,0:4181652 0|1:40,32:72:99:0|1:4181652_C_T:956,0,1551:4181652 0|1:24,24:48:99:0|1:4181652_C_T:748,0,930:4181652 1|1:0,61:61:99:1|1:4181636_C_T:2745,184,0:4181636 0/0:50,0:50:0:.:.:0,0,295:. 0/1:30,22:52:64:.:.:64,0,724:. 1|1:0,51:51:99:1|1:4181652_C_T:2295,154,0:4181652 0|1:29,20:49:99:0|1:4181652_C_T:612,0,1144:4181652 0|1:34,17:51:99:0|1:4181652_C_T:505,0,1364:4181652 1|1:0,27:27:81:1|1:4181652_C_T:1215,81,0:4181652 1|1:0,27:27:81:1|1:4181652_C_T:1215,81,0:4181652 NW_016690210.1 4281416 . C T 229084 . 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AC=44;AF=0.027;AN=1618;BaseQRankSum=-6.622e+00;DP=38742;ExcessHet=0.0000;FS=0.000;InbreedingCoeff=0.4393;MLEAC=46;MLEAF=0.028;MQ=60.00;MQRankSum=0.00;QD=11.63;ReadPosRankSum=0.00;SOR=1.168 GT:AD:DP:GQ:PL 0/1:24,26:50:99:467,0,538 0/0:50,0:50:99:0,120,1800 0/1:21,27:48:99:494,0,801 0/1:24,26:50:99:443,0,512 1/1:0,49:49:99:1101,146,0 0/1:25,25:50:99:444,0,530 0/1:26,24:50:99:395,0,596 1/1:0,50:50:99:1217,148,0 0/0:49,0:49:99:0,120,1800 1/1:0,50:50:99:1185,150,0 0/1:27,23:50:99:347,0,621 0/1:27,23:50:99:396,0,624 0/0:48,0:48:99:0,118,1259 NW_016690212.1 462275 . C T 8205.17 . AC=11;AF=6.824e-03;AN=1612;BaseQRankSum=5.71;DP=38289;ExcessHet=0.0008;FS=0.000;InbreedingCoeff=0.5563;MLEAC=11;MLEAF=6.824e-03;MQ=60.00;MQRankSum=0.00;QD=18.56;ReadPosRankSum=0.00;SOR=1.213 GT:AD:DP:GQ:PGT:PID:PL:PS 0/1:23,26:49:99:.:.:643,0,513:. 0/0:47,0:47:99:.:.:0,120,1800:. 0/1:21,27:48:99:.:.:686,0,471:. 0/0:46,0:46:99:.:.:0,119,1204:. 0/0:48,0:48:99:.:.:0,120,1800:. 0/0:49,0:49:99:.:.:0,120,1800:. 0/0:46,0:46:99:.:.:0,117,1232:. 0/0:49,0:49:99:.:.:0,120,1800:. 0/0:49,0:49:99:.:.:0,120,1800:. 0/1:28,22:50:99:.:.:539,0,661:. 0/1:25,25:50:99:.:.:614,0,543:. 0/0:48,0:48:99:.:.:0,120,1800:. 0/0:50,0:50:99:.:.:0,120,1800:. NW_016690212.1 836158 . A T 2493.52 . AC=5;AF=3.071e-03;AN=1628;BaseQRankSum=-6.351e+00;DP=37988;ExcessHet=3.0371;FS=0.000;InbreedingCoeff=0.4947;MLEAC=5;MLEAF=3.071e-03;MQ=60.00;MQRankSum=0.00;QD=10.10;ReadPosRankSum=0.00;SOR=0.566 GT:AD:DP:GQ:PL 0/0:48,0:48:99:0,120,1800 0/0:48,0:48:99:0,120,1800 0/0:46,0:46:99:0,120,1800 0/0:49,0:49:99:0,119,1470 0/1:27,23:50:99:531,0,706 0/0:47,0:47:99:0,102,1163 0/0:49,0:49:99:0,107,1191 0/0:49,0:49:99:0,114,1251 0/0:49,0:49:99:0,102,1215 0/1:31,20:51:99:438,0,840 0/0:49,0:49:99:0,120,1402 0/0:49,0:49:99:0,120,1800 0/1:27,23:50:99:532,0,752 NW_016690212.1 2146596 . T G 18943.5 . AC=29;AF=0.018;AN=1630;BaseQRankSum=-4.716e+00;DP=38776;ExcessHet=0.0000;FS=0.000;InbreedingCoeff=0.6395;MLEAC=30;MLEAF=0.018;MQ=60.00;MQRankSum=0.00;QD=20.66;ReadPosRankSum=0.00;SOR=2.540 GT:AD:DP:GQ:PGT:PID:PL:PS 1/1:1,46:47:99:.:.:1215,112,0:. 1|1:0,49:49:99:1|1:2146596_T_G:2200,147,0:2146596 0/1:23,26:49:99:.:.:571,0,491:. 0/1:25,22:47:99:.:.:431,0,532:. 1/1:0,50:50:99:.:.:1333,150,0:. 0/1:26,23:49:99:.:.:447,0,532:. 0/1:21,25:46:99:.:.:556,0,464:. 1/1:0,48:48:99:.:.:1318,144,0:. 0/1:25,25:50:99:.:.:523,0,545:. 1/1:0,49:49:99:.:.:1303,147,0:. 1/1:1,45:46:99:.:.:1170,110,0:. 1/1:0,48:48:99:.:.:1330,144,0:. 0/1:18,31:49:99:.:.:706,0,365:. NW_016690212.1 2425299 . G A 12728 . AC=14;AF=8.761e-03;AN=1598;BaseQRankSum=6.45;DP=29618;ExcessHet=0.0000;FS=0.000;InbreedingCoeff=0.5603;MLEAC=15;MLEAF=9.387e-03;MQ=60.00;MQRankSum=0.00;QD=25.61;ReadPosRankSum=0.00;SOR=1.940 GT:AD:DP:GQ:PGT:PID:PL:PS 0/0:51,0:51:99:.:.:0,113,1443:. 0/0:87,0:87:99:.:.:0,120,1800:. 0|1:23,28:51:99:0|1:2425299_G_A:724,0,506:2425299 0|1:19,30:49:99:0|1:2425299_G_A:770,0,378:2425299 0/0:45,0:45:99:.:.:0,108,1368:. 0/0:49,0:49:99:.:.:0,120,1800:. 1|1:0,50:50:99:1|1:2425299_G_A:2239,151,0:2425299 0/0:33,0:33:90:.:.:0,90,941:. 0/0:49,0:49:99:.:.:0,120,1800:. 0/0:49,0:49:99:.:.:0,102,1126:. 0/0:47,0:47:99:.:.:0,120,1800:. 0/0:49,0:49:99:.:.:0,110,1337:. 0/0:49,0:49:99:.:.:0,120,1800:. NW_016690212.1 4099676 . T C 11942.6 . AC=17;AF=0.011;AN=1600;BaseQRankSum=-6.382e+00;DP=35630;ExcessHet=0.0000;FS=0.000;InbreedingCoeff=0.6015;MLEAC=18;MLEAF=0.011;MQ=60.00;MQRankSum=0.00;QD=20.21;ReadPosRankSum=0.00;SOR=2.001 GT:AD:DP:GQ:PGT:PID:PL:PS 0/1:24,24:48:99:.:.:588,0,638:. 1/1:0,50:50:99:.:.:1408,150,0:. 0/0:49,0:49:99:.:.:0,120,1800:. 0/1:24,26:50:99:.:.:619,0,611:. 1/1:0,50:50:99:.:.:1464,150,0:. 0/1:19,28:47:99:.:.:690,0,460:. 0/0:48,0:48:99:.:.:0,118,1464:. 0/0:49,0:49:99:.:.:0,120,1800:. 0/1:19,29:48:99:.:.:715,0,472:. 1|1:0,50:50:99:1|1:4099676_T_C:2250,151,0:4099676 0/1:32,17:49:99:.:.:342,0,859:. 0/0:48,0:48:99:.:.:0,115,1081:. 1/1:0,50:50:99:.:.:1458,150,0:. NW_016690212.1 4719119 . T C 351383 . AC=351;AF=0.216;AN=1622;BaseQRankSum=-1.461e+00;DP=40699;ExcessHet=0.0000;FS=0.000;InbreedingCoeff=0.2787;MLEAC=363;MLEAF=0.224;MQ=60.00;MQRankSum=0.00;QD=25.03;ReadPosRankSum=0.00;SOR=0.301 GT:AD:DP:GQ:PGT:PID:PL:PS 0/0:51,0:51:99:.:.:0,113,1354:. 1|1:0,52:52:99:1|1:4719119_T_C:2300,156,0:4719119 0/0:51,0:51:99:.:.:0,120,1800:. 1|1:0,51:51:99:1|1:4719119_T_C:2295,154,0:4719119 1|1:0,50:50:99:1|1:4719119_T_C:2250,151,0:4719119 1|1:0,51:51:99:1|1:4719119_T_C:2295,154,0:4719119 1|1:0,49:49:99:1|1:4719119_T_C:2205,147,0:4719119 0/1:30,20:50:99:.:.:424,0,740:. 1|1:0,50:50:99:1|1:4719119_T_C:2237,151,0:4719119 0/0:50,0:50:99:.:.:0,118,1394:. 1/1:0,51:51:99:.:.:1838,153,0:. 0/0:47,0:47:99:.:.:0,117,1461:. 1|1:0,51:51:99:1|1:4719119_T_C:1732,152,0:4719119 NW_016690212.1 5130398 . C A 5302.64 . AC=9;AF=5.508e-03;AN=1634;BaseQRankSum=6.53;DP=38921;ExcessHet=0.0481;FS=0.000;InbreedingCoeff=0.4790;MLEAC=9;MLEAF=5.508e-03;MQ=60.00;MQRankSum=0.00;QD=13.67;ReadPosRankSum=0.152;SOR=0.806 GT:AD:DP:GQ:PL 0/1:23,26:50:99:697,0,888 0/1:24,29:53:99:810,0,517 0/1:27,17:44:99:407,0,639 0/0:50,0:50:99:0,119,1442 0/0:49,0:49:99:0,116,1386 1/1:1,45:46:99:1468,109,0 0/0:48,0:48:99:0,120,1800 0/0:50,0:50:99:0,120,1800 0/0:49,0:49:99:0,120,1800 0/0:50,0:50:99:0,105,1353 0/0:51,0:51:99:0,120,1800 0/0:48,0:48:99:0,120,1800 0/0:47,0:47:99:0,120,1800 NW_016690212.1 5777448 . G A 10147.6 . AC=16;AF=9.840e-03;AN=1626;BaseQRankSum=6.06;DP=39912;ExcessHet=0.1633;FS=1.108;InbreedingCoeff=0.4358;MLEAC=17;MLEAF=0.010;MQ=60.00;MQRankSum=0.00;QD=13.18;ReadPosRankSum=0.895;SOR=1.001 GT:AD:DP:GQ:PL 0/0:50,0:50:99:0,112,1364 0/1:22,27:49:99:648,0,476 1/1:0,51:51:99:1446,152,0 0/0:50,0:50:99:0,103,1579 0/0:51,0:51:99:0,120,1800 0/0:49,0:49:99:0,120,1800 0/0:50,0:50:99:0,115,1266 0/0:50,0:50:99:0,120,1800 0/0:48,0:48:99:0,110,1262 0/0:50,0:50:99:0,120,1519 0/0:52,0:52:99:0,109,672 0/0:50,0:50:99:0,120,1800 0/0:48,0:48:99:0,120,1800 NW_016690213.1 916432 . C T 298686 . AC=441;AF=0.272;AN=1622;BaseQRankSum=6.61;DP=39674;ExcessHet=0.0000;FS=0.000;InbreedingCoeff=0.1862;MLEAC=458;MLEAF=0.282;MQ=60.00;MQRankSum=0.00;QD=17.13;ReadPosRankSum=0.00;SOR=1.047 GT:AD:DP:GQ:PGT:PID:PL:PS 0/1:23,27:50:99:.:.:622,0,396:. 0/0:49,0:49:99:.:.:0,119,1078:. 0|1:21,29:50:99:0|1:916432_C_T:1148,0,783:916432 0/0:49,0:49:99:.:.:0,120,1800:. 0/0:46,0:46:99:.:.:0,120,1249:. 0|1:28,21:49:99:0|1:916432_C_T:798,0,1101:916432 0/0:50,0:50:99:.:.:0,117,871:. 0/0:49,0:49:99:.:.:0,120,1800:. 0/0:50,0:50:99:.:.:0,120,1800:. 1/1:0,47:47:99:.:.:1366,141,0:. 0/0:48,0:48:99:.:.:0,120,1800:. 0/1:30,20:50:99:.:.:423,0,561:. 0/1:26,23:49:99:.:.:505,0,456:. NW_016690213.1 1806319 . G T 23703.4 . AC=15;AF=9.191e-03;AN=1632;BaseQRankSum=8.59;DP=46027;ExcessHet=0.0000;FS=0.000;InbreedingCoeff=0.5370;MLEAC=16;MLEAF=9.804e-03;MQ=60.00;MQRankSum=0.00;QD=23.15;ReadPosRankSum=-9.794e+00;SOR=1.053 GT:AD:DP:GQ:PGT:PID:PL:PS 0/0:52,0:52:99:.:.:0,120,1800:. 0/0:48,0:48:99:.:.:0,110,1212:. 0|1:48,49:97:99:0|1:1806319_G_T:1913,0,1868:1806319 0|1:48,51:99:99:0|1:1806319_G_T:1997,0,1862:1806319 0/0:49,0:49:99:.:.:0,120,1800:. 0/0:55,0:55:99:.:.:0,114,1482:. 0|1:47,48:95:99:0|1:1806319_G_T:1874,0,1829:1806319 1|1:0,50:50:99:1|1:1806319_G_T:2250,151,0:1806319 1|1:0,50:50:99:1|1:1806319_G_T:2250,151,0:1806319 0/0:48,0:48:99:.:.:0,120,1800:. 0/0:54,0:54:99:.:.:0,114,1428:. 1|1:0,49:49:99:1|1:1806319_G_T:2205,147,0:1806319 0|1:49,51:100:99:0|1:1806319_G_T:1994,0,1904:1806319 NW_016690213.1 2372814 . C A 2468.64 . AC=7;AF=4.476e-03;AN=1564;BaseQRankSum=-2.795e+00;DP=21345;ExcessHet=0.0000;FS=0.000;InbreedingCoeff=0.6071;MLEAC=8;MLEAF=5.115e-03;MQ=60.00;MQRankSum=0.00;QD=23.51;ReadPosRankSum=0.00;SOR=3.976 GT:AD:DP:GQ:PL 0/0:50,0:50:99:0,120,1800 1/1:0,35:35:99:1000,105,0 1/1:0,19:19:57:545,57,0 0/0:30,0:30:60:0,60,794 0/0:27,0:27:81:0,81,722 0/0:19,0:19:57:0,57,523 0/0:47,0:47:99:0,120,1800 0/0:15,0:15:45:0,45,317 0/0:30,0:30:90:0,90,707 0/0:38,0:38:99:0,101,808 0/0:41,0:41:99:0,113,1164 0/0:49,0:49:99:0,120,1800 0/0:31,0:31:93:0,93,857 NW_016690213.1 2701071 . T C 269690 . AC=378;AF=0.232;AN=1630;BaseQRankSum=-5.730e+00;DP=43020;ExcessHet=0.0000;FS=2.790;InbreedingCoeff=0.2936;MLEAC=392;MLEAF=0.240;MQ=60.00;MQRankSum=0.00;QD=16.21;ReadPosRankSum=0.00;SOR=0.105 GT:AD:DP:GQ:PGT:PID:PL:PS 0/0:47,0:47:99:.:.:0,113,1394:. 0/1:18,32:50:99:.:.:761,0,397:. 0/1:20,30:50:99:.:.:706,0,443:. 0/0:49,0:49:99:.:.:0,113,1458:. 0/1:26,24:50:99:.:.:530,0,664:. 0/0:47,0:47:99:.:.:0,120,1800:. 1/1:0,48:48:99:.:.:1324,144,0:. 1/1:0,57:57:99:.:.:1540,171,0:. 1/1:0,51:51:99:.:.:1431,153,0:. 1/1:0,55:55:99:.:.:2095,165,0:. 1/1:0,53:53:99:.:.:2385,160,0:. 1/1:0,51:51:99:.:.:1406,153,0:. 1/1:0,58:58:99:.:.:2053,174,0:. NW_016690213.1 3168441 . T A 20113.1 . AC=31;AF=0.019;AN=1618;BaseQRankSum=-6.479e+00;DP=42216;ExcessHet=0.0000;FS=0.000;InbreedingCoeff=0.6827;MLEAC=32;MLEAF=0.020;MQ=60.00;MQRankSum=0.00;QD=20.74;ReadPosRankSum=0.00;SOR=2.950 GT:AD:DP:GQ:PL 0/1:27,25:52:99:518,0,676 0/1:25,24:49:99:519,0,619 1/1:0,54:54:99:1497,162,0 1/1:0,53:53:99:1524,159,0 1/1:0,52:52:99:1495,156,0 1/1:0,49:49:99:1296,147,0 1/1:1,51:52:99:1384,126,0 0/1:29,19:48:99:383,0,742 1/1:0,53:53:99:1483,158,0 0/1:28,23:51:99:483,0,708 0/1:22,27:49:99:574,0,506 1/1:0,50:50:99:1411,150,0 1/1:0,49:49:99:1357,147,0 NW_016690213.1 3314159 . G A 10271.6 . AC=14;AF=8.610e-03;AN=1626;BaseQRankSum=2.32;DP=39342;ExcessHet=0.0000;FS=5.337;InbreedingCoeff=0.6113;MLEAC=15;MLEAF=9.225e-03;MQ=60.00;MQRankSum=0.00;QD=19.13;ReadPosRankSum=0.00;SOR=1.413 GT:AD:DP:GQ:PGT:PID:PL:PS 1/1:1,50:51:99:.:.:1470,122,0:. 0/1:30,18:48:99:.:.:384,0,1200:. 0/1:21,26:47:99:.:.:632,0,480:. 0/0:50,0:50:99:.:.:0,120,1800:. 0/0:50,0:50:99:.:.:0,120,1800:. 0/0:50,0:50:99:.:.:0,120,1800:. 0/0:50,0:50:99:.:.:0,120,1800:. 0/0:49,0:49:99:.:.:0,120,1800:. 0/0:51,0:51:99:.:.:0,113,1308:. 0/0:51,0:51:99:.:.:0,120,1800:. 0/0:54,0:54:99:.:.:0,120,1800:. 1/1:0,52:52:99:.:.:1491,156,0:. 0/0:49,0:49:99:.:.:0,120,1800:. NW_016690213.1 3430926 . G A 167915 . 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AC=28;AF=0.017;AN=1634;BaseQRankSum=-5.677e+00;DP=37240;ExcessHet=0.5312;FS=0.000;InbreedingCoeff=0.3321;MLEAC=29;MLEAF=0.018;MQ=60.00;MQRankSum=0.00;QD=10.90;ReadPosRankSum=-7.440e-01;SOR=1.337 GT:AD:DP:GQ:PGT:PID:PL:PS 0/0:49,0:49:99:.:.:0,105,1219:. 0/1:22,16:38:99:.:.:314,0,519:. 0/0:49,0:49:99:.:.:0,120,1800:. 0/0:48,0:48:99:.:.:0,107,1265:. 0/0:48,0:48:99:.:.:0,115,1272:. 0/1:23,21:44:99:.:.:462,0,556:. 0/0:46,0:46:99:.:.:0,103,1209:. 0/0:45,0:45:99:.:.:0,118,1179:. 0/0:44,0:44:99:.:.:0,113,1208:. 0/1:20,24:44:99:.:.:509,0,500:. 0/0:47,0:47:99:.:.:0,116,1231:. 0/0:42,0:42:99:.:.:0,100,576:. 0/0:42,0:42:99:.:.:0,104,1017:. NW_016690213.1 5208972 . C T 24684.5 . AC=46;AF=0.028;AN=1638;BaseQRankSum=6.11;DP=39109;ExcessHet=0.0000;FS=1.842;InbreedingCoeff=0.4235;MLEAC=47;MLEAF=0.029;MQ=60.00;MQRankSum=0.00;QD=13.77;ReadPosRankSum=0.00;SOR=1.708 GT:AD:DP:GQ:PGT:PID:PL:PS 0/0:49,0:49:99:.:.:0,119,1316:. 0/0:49,0:49:99:.:.:0,114,1283:. 0/0:48,0:48:99:.:.:0,119,1424:. 0/0:46,0:46:99:.:.:0,120,1800:. 0/0:48,0:48:99:.:.:0,120,1800:. 0/0:48,0:48:99:.:.:0,119,1326:. 0/0:49,0:49:99:.:.:0,119,1015:. 0/0:48,0:48:99:.:.:0,119,1438:. 1/1:0,50:50:99:.:.:1460,150,0:. 0/0:47,0:47:99:.:.:0,113,1285:. 0/0:50,0:50:99:.:.:0,120,1800:. 1|1:0,50:50:99:1|1:5208960_A_C:2207,150,0:5208960 1/1:1,49:50:99:.:.:1416,140,0:. NW_016690214.1 1392901 . G A 91672.3 . AC=138;AF=0.097;AN=1418;BaseQRankSum=6.15;DP=36854;ExcessHet=-0.0000;FS=2.057;InbreedingCoeff=0.3778;MLEAC=183;MLEAF=0.129;MQ=59.99;MQRankSum=0.00;QD=18.96;ReadPosRankSum=0.00;SOR=1.764 GT:AD:DP:GQ:PGT:PID:PL:PS 0/0:52,0:52:99:.:.:0,120,1800:. 0/0:51,0:51:99:.:.:0,120,1800:. 0/0:51,0:51:99:.:.:0,120,1800:. 0/0:50,0:50:99:.:.:0,120,1800:. 1/1:0,30:31:90:.:.:981,90,0:. 0/1:25,22:47:99:.:.:579,0,984:. 1/1:0,47:47:99:.:.:1399,141,0:. 0/0:49,0:49:99:.:.:0,120,1800:. 0/0:48,0:48:99:.:.:0,117,1280:. 1/1:0,49:49:99:.:.:1545,147,0:. 0/0:50,0:50:99:.:.:0,120,1800:. 0/0:49,0:49:99:.:.:0,120,1800:. 1/1:0,50:50:99:.:.:1525,149,0:. NW_016690214.1 2527547 . C T 6215.31 . AC=9;AF=5.501e-03;AN=1636;BaseQRankSum=5.56;DP=40740;ExcessHet=0.0000;FS=0.000;InbreedingCoeff=0.6045;MLEAC=9;MLEAF=5.501e-03;MQ=60.00;MQRankSum=0.00;QD=21.51;ReadPosRankSum=0.00;SOR=2.609 GT:AD:DP:GQ:PL 0/0:60,0:60:99:0,120,1800 1/1:1,48:49:99:1409,119,0 1/1:0,50:50:99:1450,149,0 0/0:48,0:48:99:0,110,1340 0/0:48,0:48:99:0,120,1800 0/0:48,0:48:99:0,120,1280 0/0:52,0:52:99:0,120,1800 0/0:51,0:51:99:0,120,1800 0/0:46,0:46:99:0,101,1200 0/0:50,0:50:99:0,120,1800 0/0:52,0:52:99:0,120,1800 0/0:49,0:49:99:0,120,1800 0/0:51,0:51:99:0,120,1800 NW_016690214.1 4282898 . A G 29139.8 . AC=32;AF=0.020;AN=1632;BaseQRankSum=-6.439e+00;DP=43221;ExcessHet=0.0000;FS=0.000;InbreedingCoeff=0.4462;MLEAC=33;MLEAF=0.020;MQ=60.00;MQRankSum=0.00;QD=21.44;ReadPosRankSum=0.00;SOR=2.060 GT:AD:DP:GQ:PGT:PID:PL:PS 0/1:24,26:50:99:.:.:494,0,475:. 1|1:1,57:58:99:1|1:4282898_A_G:2551,170,0:4282898 0|1:24,31:55:99:0|1:4282898_A_G:1229,0,914:4282898 0/0:49,0:49:99:.:.:0,120,1800:. 0|1:23,26:50:99:0|1:4282898_A_G:1023,0,879:4282898 0|1:23,28:51:99:0|1:4282898_A_G:1101,0,881:4282898 0|1:22,33:55:99:0|1:4282898_A_G:1319,0,824:4282898 0|1:30,20:50:99:0|1:4282898_A_G:749,0,1192:4282898 1/1:1,50:51:99:.:.:1207,126,0:. 0/0:49,0:49:99:.:.:0,118,1242:. 0/1:29,22:51:99:.:.:407,0,645:. 1|1:0,53:53:99:1|1:4282898_A_G:2385,160,0:4282898 1|1:0,52:52:99:1|1:4282898_A_G:2306,157,0:4282898 NW_016690214.1 4909008 . T C 836318 . AC=1064;AF=0.657;AN=1620;BaseQRankSum=-6.466e+00;DP=45392;ExcessHet=0.0000;FS=0.000;InbreedingCoeff=0.2492;MLEAC=1109;MLEAF=0.685;MQ=60.00;MQRankSum=0.00;QD=22.05;ReadPosRankSum=0.00;SOR=1.358 GT:AD:DP:GQ:PGT:PID:PL:PS 1/1:0,107:107:99:.:.:2930,321,0:. 1/1:0,56:56:99:.:.:1649,168,0:. 1/1:0,57:57:99:.:.:1726,171,0:. 1/1:0,53:53:99:.:.:1538,159,0:. 0/1:23,33:56:99:.:.:756,0,554:. 1/1:0,55:55:99:.:.:1607,165,0:. 1/1:0,54:54:99:.:.:1364,161,0:. 0/1:22,27:50:99:.:.:545,0,485:. 0/0:51,0:51:99:.:.:0,120,1800:. 1/1:0,53:54:99:.:.:1325,158,0:. 1/1:0,50:50:99:.:.:1239,149,0:. 0/0:55,0:55:99:.:.:0,108,1607:. 0/1:30,21:51:99:.:.:371,0,707:. NW_016690214.1 6252342 . G A 26203 . AC=60;AF=0.037;AN=1618;BaseQRankSum=6.35;DP=34809;ExcessHet=0.0084;FS=2.014;InbreedingCoeff=0.3076;MLEAC=62;MLEAF=0.038;MQ=60.00;MQRankSum=0.00;QD=11.33;ReadPosRankSum=0.00;SOR=1.037 GT:AD:DP:GQ:PGT:PID:PL:PS 0/1:40,10:50:99:.:.:147,0,914:. 0/0:49,0:49:99:.:.:0,118,1349:. 0/0:50,0:50:99:.:.:0,120,1800:. 0/0:50,0:50:99:.:.:0,120,1800:. 0/0:50,0:50:99:.:.:0,120,1800:. 0/0:49,0:49:99:.:.:0,120,1800:. 0/1:5,17:22:63:.:.:407,0,63:. 0/0:49,0:49:99:.:.:0,120,1800:. 0/0:50,0:50:99:.:.:0,120,1800:. 0/1:23,23:46:99:.:.:545,0,476:. 0/0:50,0:50:99:.:.:0,120,1800:. 0/0:50,0:50:99:.:.:0,120,1800:. 0/0:50,0:50:99:.:.:0,120,1800:. NW_016690215.1 1239746 . G T 75224 . AC=124;AF=0.076;AN=1622;BaseQRankSum=4.91;DP=36814;ExcessHet=0.0000;FS=0.000;InbreedingCoeff=0.3416;MLEAC=129;MLEAF=0.080;MQ=60.00;MQRankSum=0.00;QD=16.12;ReadPosRankSum=0.00;SOR=0.887 GT:AD:DP:GQ:PGT:PID:PL:PS 0/0:53,0:53:99:.:.:0,120,1800:. 0/0:50,0:50:99:.:.:0,120,1800:. 0/0:48,0:48:99:.:.:0,120,1800:. 0/0:49,0:49:99:.:.:0,120,1800:. 0/1:29,20:49:99:.:.:489,0,729:. 0/0:49,0:49:99:.:.:0,120,1800:. 0/0:49,0:49:99:.:.:0,120,1800:. 0/0:47,0:47:99:.:.:0,120,1800:. 0/0:48,0:48:99:.:.:0,120,1800:. 0/1:27,22:49:99:.:.:539,0,665:. 0/1:22,24:46:99:.:.:616,0,549:. 0/0:52,0:52:99:.:.:0,120,1800:. 0/0:53,0:53:99:.:.:0,120,1800:. NW_016690215.1 1320381 . T C 4828.39 . AC=7;AF=4.332e-03;AN=1616;BaseQRankSum=-6.272e+00;DP=34850;ExcessHet=0.0000;FS=0.000;InbreedingCoeff=0.6259;MLEAC=7;MLEAF=4.332e-03;MQ=60.00;MQRankSum=0.00;QD=24.63;ReadPosRankSum=0.00;SOR=3.402 GT:AD:DP:GQ:PL 0/0:50,0:50:99:0,120,1800 0/0:50,0:50:99:0,120,1800 0/0:50,0:50:99:0,120,1800 0/0:49,0:49:99:0,120,1800 0/0:50,0:50:99:0,120,1800 0/0:49,0:49:99:0,120,1800 0/0:49,0:49:99:0,120,1800 0/1:30,20:50:99:385,0,733 0/0:49,0:49:99:0,119,1412 1/1:0,50:50:99:1337,150,0 0/0:49,0:49:99:0,120,1800 0/0:49,0:49:99:0,119,1362 0/0:50,0:50:99:0,117,1301 NW_016690215.1 3402906 . G T 2210.84 . AC=3;AF=1.861e-03;AN=1612;BaseQRankSum=6.65;DP=39253;ExcessHet=3.0184;FS=0.000;InbreedingCoeff=0.5757;MLEAC=3;MLEAF=1.861e-03;MQ=60.00;MQRankSum=0.00;QD=15.04;ReadPosRankSum=0.00;SOR=0.734 GT:AD:DP:GQ:PL 0/0:48,0:48:99:0,120,1800 0/0:49,0:49:99:0,120,1800 0/0:48,0:48:99:0,120,1800 0/0:48,0:48:99:0,120,1800 0/0:47,0:47:99:0,120,1800 0/0:50,0:50:99:0,120,1800 0/0:49,0:49:99:0,116,857 0/0:49,0:49:99:0,113,904 0/1:26,23:49:99:560,0,583 0/0:48,0:48:99:0,119,1409 0/1:21,28:49:99:1109,0,786 0/1:25,24:49:99:614,0,566 0/0:49,0:49:99:0,120,1800 NW_016690215.1 4943215 . G A 21450.7 . AC=34;AF=0.021;AN=1618;BaseQRankSum=5.26;DP=39593;ExcessHet=0.0000;FS=0.000;InbreedingCoeff=0.4431;MLEAC=35;MLEAF=0.022;MQ=60.00;MQRankSum=0.00;QD=14.68;ReadPosRankSum=-1.060e-01;SOR=1.080 GT:AD:DP:GQ:PGT:PID:PL:PS 0/1:17,33:50:99:.:.:817,0,320:. 0/1:25,23:48:99:.:.:487,0,500:. 1/1:0,50:50:99:.:.:1437,150,0:. 1/1:0,49:49:99:.:.:1499,147,0:. 0/1:21,32:53:99:.:.:719,0,366:. 0/0:47,0:47:99:.:.:0,113,712:. 0/1:34,16:50:99:.:.:209,0,653:. 0/0:49,0:49:99:.:.:0,120,1800:. 0/0:48,0:48:99:.:.:0,117,1394:. 0/1:25,28:53:99:.:.:614,0,966:. 0/0:51,0:51:99:.:.:0,120,1800:. 0/1:25,28:53:99:.:.:625,0,962:. 0/1:29,24:53:99:.:.:527,0,597:. NW_016690219.1 241640 . C T 3440.97 . AC=5;AF=3.121e-03;AN=1602;BaseQRankSum=4.20;DP=36685;ExcessHet=0.0000;FS=0.000;InbreedingCoeff=0.6502;MLEAC=5;MLEAF=3.121e-03;MQ=60.00;MQRankSum=0.00;QD=23.09;ReadPosRankSum=0.00;SOR=3.183 GT:AD:DP:GQ:PL 0/1:25,25:50:99:629,0,961 0/0:47,0:47:99:0,118,1352 0/0:49,0:49:99:0,120,1800 0/0:50,0:50:99:0,120,1800 0/0:48,0:48:99:0,118,1391 0/0:49,0:49:99:0,120,1800 0/0:50,0:50:99:0,120,1800 0/0:48,0:48:99:0,120,1800 1/1:0,50:50:99:1510,150,0 0/0:50,0:50:99:0,120,1800 0/0:50,0:50:99:0,120,1800 0/0:49,0:49:99:0,120,1800 1/1:0,49:49:99:1423,147,0 NW_016690219.1 431563 . G C 6504.89 . AC=16;AF=9.816e-03;AN=1630;BaseQRankSum=-6.037e+00;DP=39061;ExcessHet=0.0000;FS=0.000;InbreedingCoeff=0.6183;MLEAC=17;MLEAF=0.010;MQ=60.00;MQRankSum=0.00;QD=11.96;ReadPosRankSum=0.00;SOR=1.875 GT:AD:DP:GQ:PL 0/0:48,0:48:99:0,119,1073 0/0:48,0:48:99:0,120,1800 0/1:36,14:50:99:182,0,869 0/0:49,0:49:99:0,120,1800 0/0:49,0:49:99:0,120,1800 0/1:22,28:50:99:486,0,443 0/0:47,0:47:99:0,120,1800 1/1:1,45:46:99:998,113,0 1/1:1,49:50:99:1079,121,0 0/1:25,25:50:99:138,0,504 0/1:26,24:50:99:102,0,543 1/1:0,50:50:99:1135,149,0 1/1:0,48:48:99:1090,143,0 NW_016690219.1 542209 . A G 103967 . AC=210;AF=0.132;AN=1586;BaseQRankSum=-5.851e+00;DP=36109;ExcessHet=-0.0000;FS=8.586;InbreedingCoeff=0.4193;MLEAC=223;MLEAF=0.141;MQ=60.00;MQRankSum=0.00;QD=14.16;ReadPosRankSum=0.00;SOR=0.067 GT:AD:DP:GQ:PGT:PID:PL:PS 1/1:0,48:48:99:.:.:457,122,0:. 1/1:0,49:49:99:.:.:466,125,0:. 0/1:27,22:49:72:.:.:72,0,685:. 0/1:33,17:50:20:.:.:20,0,817:. 0/1:26,22:48:76:.:.:76,0,643:. 1/1:0,50:50:99:.:.:476,127,0:. 1/1:0,48:48:99:.:.:457,122,0:. 1/1:0,23:23:59:.:.:219,59,0:. 1/1:0,47:47:99:.:.:447,120,0:. 1/1:0,46:46:99:.:.:438,117,0:. 1/1:0,45:45:99:.:.:428,115,0:. 1/1:0,47:47:99:.:.:447,120,0:. 1/1:0,47:47:99:.:.:447,120,0:. NW_016690219.1 1106467 . C A 143954 . AC=150;AF=0.092;AN=1622;BaseQRankSum=0.994;DP=39879;ExcessHet=0.0000;FS=11.363;InbreedingCoeff=0.6313;MLEAC=155;MLEAF=0.096;MQ=60.00;MQRankSum=0.00;QD=28.02;ReadPosRankSum=0.00;SOR=0.046 GT:AD:DP:GQ:PGT:PID:PL:PS 0/1:28,22:50:99:.:.:480,0,648:. 1|1:0,48:48:99:1|1:1106467_C_A:2123,144,0:1106467 1|1:0,50:50:99:1|1:1106467_C_A:2248,151,0:1106467 1|1:0,48:48:99:1|1:1106467_C_A:2151,144,0:1106467 1|1:0,50:50:99:1|1:1106467_C_A:2250,151,0:1106467 0/0:49,0:49:99:.:.:0,120,1800:. 1|1:0,50:50:99:1|1:1106467_C_A:2243,151,0:1106467 1|1:0,48:48:99:1|1:1106467_C_A:2161,145,0:1106467 1|1:0,48:48:99:1|1:1106467_C_A:2154,144,0:1106467 1|1:0,49:49:99:1|1:1106467_C_A:2197,147,0:1106467 1|1:0,50:50:99:1|1:1106467_C_A:2250,151,0:1106467 1|1:0,49:49:99:1|1:1106467_C_A:2199,147,0:1106467 1/1:0,50:50:99:.:.:1435,150,0:. NW_016690219.1 1182939 . G C 51091.2 . AC=43;AF=0.028;AN=1544;BaseQRankSum=-5.916e+00;DP=42717;ExcessHet=-0.0000;FS=24.909;InbreedingCoeff=0.3006;MLEAC=59;MLEAF=0.038;MQ=59.99;MQRankSum=0.00;QD=24.09;ReadPosRankSum=0.697;SOR=2.491 GT:AD:DP:GQ:PGT:PID:PL:PS 1|1:0,51:51:99:1|1:1182939_G_C:2295,154,0:1182939 1|1:0,53:53:99:1|1:1182939_G_C:2385,160,0:1182939 0|1:38,12:50:99:0|1:1182939_G_C:389,0,1559:1182939 0|1:45,55:100:99:0|1:1182939_G_C:1148,0,954:1182939 1|1:0,51:51:99:1|1:1182939_G_C:2295,154,0:1182939 1|1:0,48:48:99:1|1:1182939_G_C:2160,144,0:1182939 1|1:0,50:50:99:1|1:1182938_A_G:2250,151,0:1182938 0/0:51,0:51:99:.:.:0,120,1800:. 1|1:0,54:54:99:1|1:1182939_G_C:2430,163,0:1182939 0/0:53,0:53:99:.:.:0,120,1800:. 0|1:29,21:50:99:0|1:1182939_G_C:794,0,1154:1182939 1|1:0,54:54:99:1|1:1182939_G_C:2430,163,0:1182939 1|1:0,53:53:99:1|1:1182939_G_C:2385,160,0:1182939 NW_016690219.1 2025082 . C T 18716 . AC=31;AF=0.021;AN=1476;BaseQRankSum=6.19;DP=33628;ExcessHet=0.0000;FS=0.000;InbreedingCoeff=0.5566;MLEAC=35;MLEAF=0.024;MQ=60.00;MQRankSum=0.00;QD=18.00;ReadPosRankSum=0.00;SOR=0.335 GT:AD:DP:GQ:PL 1/1:1,49:50:99:1510,140,0 0/1:24,26:50:89:630,0,89 0/1:29,20:49:99:496,0,142 0/1:24,21:45:99:536,0,104 0/0:51,0:51:99:0,120,1800 0/0:48,0:48:99:0,113,1316 0/0:49,0:49:99:0,118,1228 0/1:26,21:47:99:493,0,118 0/1:28,20:48:99:472,0,135 0/1:23,22:45:94:549,0,94 0/0:49,0:49:99:0,120,1800 0/1:21,21:42:83:525,0,83 0/0:47,0:47:99:0,99,1294 NW_016690219.1 5129350 . C G 95299.5 . AC=141;AF=0.087;AN=1626;BaseQRankSum=5.70;DP=39297;ExcessHet=0.0967;FS=0.000;InbreedingCoeff=0.1599;MLEAC=146;MLEAF=0.090;MQ=60.00;MQRankSum=0.00;QD=14.80;ReadPosRankSum=0.00;SOR=0.521 GT:AD:DP:GQ:PGT:PID:PL:PS 0/1:28,22:50:99:.:.:435,0,529:. 0/1:27,23:50:99:.:.:448,0,522:. 0/0:49,0:49:99:.:.:0,112,1292:. 0/1:31,19:50:99:.:.:338,0,598:. 0/0:47,0:47:99:.:.:0,120,1800:. 0/0:47,0:47:99:.:.:0,115,1166:. 0/1:22,28:50:99:.:.:621,0,413:. 0/1:29,21:50:99:.:.:412,0,567:. 0/1:23,27:50:99:.:.:621,0,441:. 0/1:22,28:50:99:.:.:636,0,415:. 0/1:18,29:47:99:.:.:623,0,304:. 0/1:14,35:49:99:.:.:768,0,198:. 0/1:21,29:50:99:.:.:629,0,369:. NW_016690219.1 5281296 . C T 912744 . AC=1134;AF=0.758;AN=1496;BaseQRankSum=6.06;DP=35533;ExcessHet=-0.0000;FS=0.000;InbreedingCoeff=0.5095;MLEAC=1279;MLEAF=0.855;MQ=59.98;MQRankSum=0.00;QD=30.82;ReadPosRankSum=0.00;SOR=0.428 GT:AD:DP:GQ:PGT:PID:PL:PS 1/1:0,50:50:99:.:.:1534,150,0:. 1/1:0,50:50:99:.:.:1486,149,0:. 0/0:52,0:52:99:.:.:0,102,897:. 0/0:48,0:48:99:.:.:0,106,1249:. 0/0:50,0:50:99:.:.:0,120,1800:. 0/1:37,13:50:99:.:.:238,0,804:. 1/1:0,50:50:99:.:.:1564,150,0:. 0/1:40,10:50:99:.:.:158,0,936:. 1/1:0,47:47:99:.:.:1469,141,0:. 1/1:0,49:49:99:.:.:1533,147,0:. 0/0:47,0:47:99:.:.:0,120,1800:. 1/1:0,50:50:99:.:.:1636,150,0:. 1/1:0,50:50:99:.:.:1634,150,0:. NW_016690219.1 5441414 . G A 152230 . AC=232;AF=0.142;AN=1630;BaseQRankSum=6.65;DP=39561;ExcessHet=0.0042;FS=0.000;InbreedingCoeff=0.1517;MLEAC=241;MLEAF=0.148;MQ=60.00;MQRankSum=0.00;QD=15.04;ReadPosRankSum=0.00;SOR=1.160 GT:AD:DP:GQ:PGT:PID:PL:PS 0/1:22,28:50:69:.:.:767,0,69:. 1/1:0,52:52:99:.:.:1497,156,0:. 0/0:49,0:49:99:.:.:0,114,1242:. 0/1:21,27:48:65:.:.:670,0,65:. 0/0:49,0:49:99:.:.:0,120,1800:. 0/1:28,21:49:99:.:.:486,0,132:. 1/1:0,48:48:99:.:.:1419,144,0:. 0/1:20,31:51:46:.:.:808,0,46:. 1/1:0,49:49:99:.:.:1459,146,0:. 0/1:31,24:55:99:.:.:543,0,144:. 0/1:27,26:53:99:.:.:651,0,110:. 1/1:0,52:52:99:.:.:1580,156,0:. 1/1:0,50:50:99:.:.:1521,150,0:. NW_016690219.1 5757408 . A C 2412.81 . AC=4;AF=2.481e-03;AN=1612;BaseQRankSum=-5.834e+00;DP=38398;ExcessHet=0.0081;FS=0.000;InbreedingCoeff=0.5924;MLEAC=4;MLEAF=2.481e-03;MQ=60.00;MQRankSum=0.00;QD=16.53;ReadPosRankSum=0.00;SOR=1.483 GT:AD:DP:GQ:PL 0/0:49,0:49:99:0,119,1313 0/0:50,0:50:99:0,120,1800 0/0:49,0:49:99:0,120,1469 0/0:49,0:49:99:0,119,1421 0/0:49,0:49:99:0,120,1800 0/0:47,0:47:99:0,117,1006 0/0:50,0:50:99:0,120,1800 0/0:49,0:49:99:0,120,1800 0/1:23,25:48:99:624,0,581 0/0:49,0:49:99:0,120,1800 0/0:49,0:49:99:0,119,1454 1/1:0,49:49:99:1424,147,0 0/1:28,21:49:99:462,0,1113 NW_016690219.1 6173360 . A C 604337 . AC=932;AF=0.589;AN=1582;BaseQRankSum=-8.230e-01;DP=37227;ExcessHet=0.0000;FS=0.000;InbreedingCoeff=0.2582;MLEAC=995;MLEAF=0.629;MQ=60.00;MQRankSum=0.00;QD=21.40;ReadPosRankSum=0.00;SOR=0.098 GT:AD:DP:GQ:PGT:PID:PL:PS 0/1:22,25:47:99:.:.:545,0,469:. 0/0:50,0:50:99:.:.:0,120,1800:. 0/0:50,0:50:99:.:.:0,120,1800:. 0/1:30,17:47:99:.:.:314,0,691:. 1/1:0,49:49:99:.:.:1293,147,0:. 0/1:25,24:49:99:.:.:495,0,546:. 1/1:0,49:49:99:.:.:1334,147,0:. 0/1:31,16:47:99:.:.:317,0,774:. 1/1:0,48:48:99:.:.:1314,144,0:. 0/1:28,17:45:99:.:.:315,0,641:. 1/1:0,48:48:99:.:.:1309,144,0:. 1/1:0,50:50:99:.:.:1384,149,0:. 1/1:0,49:49:99:.:.:1348,147,0:. NW_016690216.1 141054 . A G 2083.17 . AC=4;AF=2.451e-03;AN=1632;BaseQRankSum=-5.183e+00;DP=37167;ExcessHet=0.0080;FS=0.000;InbreedingCoeff=0.6293;MLEAC=4;MLEAF=2.451e-03;MQ=60.00;MQRankSum=0.00;QD=14.99;ReadPosRankSum=1.00;SOR=1.414 GT:AD:DP:GQ:PL 0/0:54,0:54:99:0,120,1800 0/0:52,0:52:99:0,120,1800 0/0:46,0:46:99:0,120,1800 0/0:47,0:47:99:0,106,1157 0/0:46,0:46:99:0,117,1112 0/0:48,0:48:99:0,120,1800 0/0:52,0:52:99:0,120,1800 1/1:0,47:47:99:1290,140,0 0/0:47,0:47:99:0,120,1800 0/1:25,23:48:99:499,0,647 0/1:25,19:44:99:392,0,654 0/0:49,0:49:99:0,108,1247 0/0:48,0:48:99:0,118,1423 NW_016690216.1 2812831 . T C 152738 . AC=150;AF=0.093;AN=1620;BaseQRankSum=-6.606e+00;DP=39464;ExcessHet=0.0000;FS=3.511;InbreedingCoeff=0.6585;MLEAC=155;MLEAF=0.096;MQ=60.00;MQRankSum=0.00;QD=30.95;ReadPosRankSum=0.00;SOR=1.278 GT:AD:DP:GQ:PGT:PID:PL:PS 1/1:0,49:49:99:.:.:1677,146,0:. 1|1:0,48:48:99:1|1:2812831_T_C:2133,144,0:2812831 1|1:0,49:49:99:1|1:2812831_T_C:2177,147,0:2812831 1|1:0,48:48:99:1|1:2812831_T_C:2160,144,0:2812831 1|1:0,50:50:99:1|1:2812831_T_C:2208,150,0:2812831 1|1:0,46:46:99:1|1:2812831_T_C:2059,138,0:2812831 0|1:32,18:50:99:0|1:2812831_T_C:659,0,1284:2812831 1|1:0,49:49:99:1|1:2812831_T_C:2174,147,0:2812831 0|1:28,21:49:99:0|1:2812831_T_C:771,0,1095:2812831 1|1:0,49:49:99:1|1:2812831_T_C:2186,147,0:2812831 0|1:21,29:50:99:0|1:2812831_T_C:1145,0,765:2812831 1|1:0,45:45:99:1|1:2812831_T_C:2008,135,0:2812831 1|1:0,49:49:99:1|1:2812831_T_C:2198,147,0:2812831 NW_016690216.1 3041005 . C T 241503 . AC=275;AF=0.170;AN=1622;BaseQRankSum=6.53;DP=39343;ExcessHet=0.0000;FS=0.000;InbreedingCoeff=0.2427;MLEAC=286;MLEAF=0.176;MQ=60.00;MQRankSum=0.00;QD=21.61;ReadPosRankSum=0.00;SOR=0.882 GT:AD:DP:GQ:PGT:PID:PL:PS 1|1:0,47:47:99:1|1:3040995_G_A:2106,141,0:3040995 0/1:24,23:47:99:.:.:540,0,520:. 0/1:31,18:49:99:.:.:388,0,707:. 0/0:50,0:50:99:.:.:0,120,1800:. 0/1:24,23:47:99:.:.:498,0,461:. 0/1:27,21:48:99:.:.:460,0,558:. 0/1:22,28:50:99:.:.:628,0,399:. 1|1:0,48:49:99:1|1:3040995_G_A:2160,144,0:3040995 0/0:50,0:50:99:.:.:0,120,1800:. 1|1:0,50:50:99:1|1:3040995_G_A:2244,151,0:3040995 0/1:29,21:50:99:.:.:453,0,594:. 0/0:49,0:49:99:.:.:0,120,1800:. 0/0:49,0:49:99:.:.:0,120,1800:. NW_016690216.1 6252169 . A G 1589.61 . AC=10;AF=6.143e-03;AN=1628;BaseQRankSum=-6.083e+00;DP=39027;ExcessHet=0.0000;FS=0.000;InbreedingCoeff=0.6282;MLEAC=10;MLEAF=6.143e-03;MQ=60.00;MQRankSum=0.00;QD=4.95;ReadPosRankSum=0.00;SOR=2.355 GT:AD:DP:GQ:PL 0/0:46,0:46:99:0,120,1800 0/0:49,0:49:99:0,120,1800 0/0:49,0:49:99:0,120,1800 0/1:20,22:42:94:94,0,493 1/1:0,49:49:99:466,125,0 0/0:48,0:48:99:0,119,1399 0/0:49,0:49:99:0,104,1449 0/1:22,26:48:99:115,0,541 1/1:0,46:46:99:438,117,0 0/0:44,0:44:99:0,111,1277 0/1:18,27:45:99:134,0,443 0/1:17,24:41:99:116,0,409 1/1:1,49:50:96:434,96,0 NW_016690218.1 581500 . C T 14787 . AC=24;AF=0.015;AN=1634;BaseQRankSum=6.69;DP=39170;ExcessHet=0.0000;FS=0.000;InbreedingCoeff=0.5941;MLEAC=25;MLEAF=0.015;MQ=60.00;MQRankSum=0.00;QD=17.69;ReadPosRankSum=0.00;SOR=1.604 GT:AD:DP:GQ:PGT:PID:PL:PS 0/1:26,24:50:99:.:.:609,0,577:. 1/1:0,49:49:99:.:.:1458,147,0:. 0/1:28,22:50:99:.:.:492,0,589:. 0/1:37,13:50:99:.:.:239,0,770:. 0/0:48,0:48:99:.:.:0,120,1800:. 0/1:27,22:49:99:.:.:475,0,548:. 1/1:0,49:49:99:.:.:1458,147,0:. 0/1:26,23:49:99:.:.:550,0,572:. 1/1:0,49:49:99:.:.:1538,147,0:. 0/0:50,0:50:99:.:.:0,120,1800:. 0/0:48,0:48:99:.:.:0,118,1097:. 0/1:30,21:51:99:.:.:492,0,678:. 0/1:21,27:48:99:.:.:658,0,437:. NW_016690218.1 3069572 . C T 1550.9 . AC=3;AF=1.868e-03;AN=1606;BaseQRankSum=6.84;DP=35368;ExcessHet=3.0184;FS=0.000;InbreedingCoeff=0.5884;MLEAC=3;MLEAF=1.868e-03;MQ=60.00;MQRankSum=0.00;QD=10.48;ReadPosRankSum=0.00;SOR=0.776 GT:AD:DP:GQ:PL 0/0:50,0:50:99:0,120,1800 0/0:50,0:50:99:0,120,1800 0/0:49,0:49:99:0,120,1800 0/0:50,0:50:99:0,120,1800 0/0:49,0:49:99:0,119,1128 0/0:48,0:48:99:0,109,1222 0/0:50,0:50:99:0,120,1800 0/0:45,0:45:99:0,104,1098 0/1:22,28:50:99:579,0,395 0/0:49,0:49:99:0,120,1800 0/0:50,0:50:99:0,120,1800 0/1:29,20:49:99:387,0,570 0/1:20,29:49:99:657,0,368 NW_016690218.1 3726887 . T A 8304.28 . AC=14;AF=8.621e-03;AN=1624;BaseQRankSum=6.65;DP=38589;ExcessHet=0.0025;FS=0.000;InbreedingCoeff=0.5039;MLEAC=15;MLEAF=9.236e-03;MQ=60.00;MQRankSum=0.00;QD=13.91;ReadPosRankSum=0.00;SOR=0.985 GT:AD:DP:GQ:PL 0/0:49,0:49:99:0,116,1288 0/0:47,0:47:99:0,120,1800 0/1:26,24:50:99:563,0,528 0/1:31,19:50:99:403,0,663 0/0:46,0:46:99:0,120,1800 0/1:26,23:49:99:497,0,514 0/1:21,28:49:99:686,0,433 0/0:49,0:49:99:0,120,1800 0/1:22,28:50:99:711,0,424 0/1:26,24:50:99:567,0,566 0/0:50,0:50:99:0,120,1800 1/1:0,50:50:99:1483,150,0 0/1:29,20:49:99:428,0,629 NW_016690220.1 694914 . G A 8079.5 . AC=21;AF=0.013;AN=1628;BaseQRankSum=6.31;DP=39077;ExcessHet=-0.0000;FS=0.000;InbreedingCoeff=0.7084;MLEAC=20;MLEAF=0.012;MQ=60.00;MQRankSum=0.00;QD=18.20;ReadPosRankSum=0.00;SOR=3.258 GT:AD:DP:GQ:PL 0/0:47,0:47:99:0,115,1372 0/0:49,0:49:99:0,120,1417 0/0:49,0:49:99:0,116,1305 0/0:50,0:50:99:0,120,1800 0/0:49,0:49:99:0,118,1453 0/0:49,0:49:99:0,120,1800 0/0:49,0:49:99:0,120,1800 0/0:48,0:48:99:0,120,1800 0/0:49,0:49:99:0,120,1800 0/0:49,0:49:99:0,108,1030 0/0:49,0:49:99:0,120,1800 1/1:0,47:48:99:1255,141,0 0/1:24,25:49:99:520,0,453 NW_016690220.1 2144240 . A T 6972.66 . AC=11;AF=6.765e-03;AN=1626;BaseQRankSum=6.04;DP=37915;ExcessHet=3.1582;FS=0.000;InbreedingCoeff=0.4496;MLEAC=11;MLEAF=6.765e-03;MQ=60.00;MQRankSum=0.00;QD=12.84;ReadPosRankSum=0.00;SOR=0.697 GT:AD:DP:GQ:PL 0/0:49,0:49:99:0,103,1223 0/0:48,0:48:99:0,114,1261 0/1:23,26:49:99:678,0,559 0/1:23,27:50:99:703,0,511 0/0:50,0:50:99:0,120,1800 0/0:45,0:45:99:0,120,1800 0/1:29,21:50:99:515,0,736 0/0:49,0:49:99:0,118,1229 0/0:49,0:49:99:0,120,1800 0/0:50,0:50:99:0,118,1224 0/0:49,0:49:99:0,119,1226 0/1:20,28:48:99:716,0,427 0/0:49,0:49:99:0,118,1417 NW_016690220.1 3540286 . T C 13900.3 . AC=20;AF=0.012;AN=1634;BaseQRankSum=-6.514e+00;DP=40138;ExcessHet=0.0116;FS=0.000;InbreedingCoeff=0.4383;MLEAC=21;MLEAF=0.013;MQ=60.00;MQRankSum=0.00;QD=14.90;ReadPosRankSum=0.00;SOR=0.266 GT:AD:DP:GQ:PGT:PID:PL:PS 0/0:50,0:50:99:.:.:0,117,1181:. 0/1:26,24:50:99:.:.:547,0,689:. 0/1:24,25:49:99:.:.:584,0,628:. 0/1:28,22:50:99:.:.:441,0,710:. 0/0:49,0:49:99:.:.:0,117,1588:. 0/1:30,20:50:99:.:.:405,0,773:. 0/1:29,21:50:99:.:.:447,0,769:. 0/1:25,25:50:99:.:.:503,0,617:. 1|1:0,50:50:99:1|1:3540283_A_G:2215,150,0:3540283 0/0:50,0:50:99:.:.:0,120,1800:. 0/0:49,0:49:99:.:.:0,105,1322:. 1|1:0,51:51:99:1|1:3540283_A_G:2248,153,0:3540283 0/1:17,29:46:99:.:.:677,0,383:. NW_016690220.1 3893630 . T C 32258 . AC=52;AF=0.032;AN=1604;BaseQRankSum=-5.347e+00;DP=39200;ExcessHet=0.5685;FS=0.000;InbreedingCoeff=0.2849;MLEAC=55;MLEAF=0.034;MQ=60.00;MQRankSum=0.00;QD=12.21;ReadPosRankSum=0.00;SOR=0.699 GT:AD:DP:GQ:PGT:PID:PL:PS 0/0:53,0:53:99:.:.:0,120,1800:. 0/0:50,0:50:99:.:.:0,117,1349:. 0/1:46,50:96:99:.:.:210,0,1080:. 0/0:49,0:49:99:.:.:0,120,1284:. 0/0:53,0:53:99:.:.:0,100,1242:. 0/0:51,0:51:99:.:.:0,100,1292:. 0/0:50,0:50:99:.:.:0,111,1236:. 0/0:47,0:47:99:.:.:0,118,1314:. 0/1:26,26:52:99:.:.:103,0,624:. 0/0:54,0:54:99:.:.:0,120,1800:. 0/0:49,0:49:99:.:.:0,105,1226:. 0/1:34,21:55:45:.:.:45,0,854:. 0/0:49,0:49:99:.:.:0,110,1234:. NW_016690220.1 3985091 . C G 13345.9 . AC=20;AF=0.012;AN=1632;BaseQRankSum=0.904;DP=39248;ExcessHet=0.0003;FS=0.000;InbreedingCoeff=0.4754;MLEAC=21;MLEAF=0.013;MQ=60.00;MQRankSum=0.00;QD=16.20;ReadPosRankSum=0.00;SOR=1.168 GT:AD:DP:GQ:PGT:PID:PL:PS 0/0:53,0:53:99:.:.:0,120,1800:. 0/0:53,0:53:99:.:.:0,120,1800:. 0/1:24,25:49:99:.:.:613,0,566:. 0/0:49,0:49:99:.:.:0,120,1800:. 0/0:51,0:51:99:.:.:0,113,1350:. 0|1:24,20:44:99:0|1:3985091_C_G:759,0,948:3985091 0/1:24,27:51:99:.:.:628,0,529:. 0/1:26,22:48:99:.:.:506,0,638:. 1/1:0,47:47:99:.:.:1347,140,0:. 0/0:53,0:53:99:.:.:0,120,1800:. 0/1:22,26:48:99:.:.:640,0,503:. 0/1:22,28:50:99:.:.:675,0,479:. 1/1:0,51:51:99:.:.:1413,152,0:. NW_016690220.1 4185029 . A T 205244 . AC=300;AF=0.185;AN=1620;BaseQRankSum=6.28;DP=38394;ExcessHet=0.0000;FS=2.809;InbreedingCoeff=0.2732;MLEAC=312;MLEAF=0.193;MQ=60.00;MQRankSum=0.00;QD=17.60;ReadPosRankSum=0.00;SOR=0.099 GT:AD:DP:GQ:PGT:PID:PL:PS 0/0:50,0:50:99:.:.:0,118,1362:. 0/1:28,22:50:99:.:.:525,0,679:. 0/1:28,21:49:99:.:.:539,0,686:. 0/1:20,27:47:99:.:.:715,0,452:. 0/0:49,0:49:99:.:.:0,119,1414:. 1/1:0,50:50:99:.:.:1588,150,0:. 0/1:29,20:49:99:.:.:442,0,738:. 0/1:31,18:49:99:.:.:405,0,775:. 1/1:0,49:49:99:.:.:1593,147,0:. 1/1:0,50:50:99:.:.:1516,150,0:. 1/1:0,49:49:99:.:.:1530,147,0:. 1/1:0,47:47:99:.:.:1486,141,0:. 0/1:21,29:50:99:.:.:771,0,492:. NW_016690220.1 5264316 . A T 993143 . AC=560;AF=0.344;AN=1628;BaseQRankSum=-5.755e+00;DP=56984;ExcessHet=0.0019;FS=22.252;InbreedingCoeff=0.1242;MLEAC=581;MLEAF=0.357;MQ=59.99;MQRankSum=0.00;QD=29.10;ReadPosRankSum=0.00;SOR=0.135 GT:AD:DP:GQ:PGT:PID:PL:PS 0/0:48,0:48:99:.:.:0,120,1800:. 0/0:47,0:47:99:.:.:0,120,1413:. 0/0:49,0:49:99:.:.:0,120,1800:. 0|1:19,81:100:99:0|1:5264316_A_T:3309,0,554:5264316 0/0:54,0:54:99:.:.:0,120,1800:. 0/0:48,0:48:99:.:.:0,120,1800:. 0/0:50,0:50:99:.:.:0,119,1323:. 0/0:49,0:49:99:.:.:0,120,1800:. 0/0:49,0:49:99:.:.:0,120,1800:. 1|1:0,101:101:99:1|1:5264316_A_T:4541,304,0:5264316 0/0:48,0:48:99:.:.:0,120,1800:. 0/0:48,0:48:99:.:.:0,120,1800:. 0/0:48,0:48:99:.:.:0,120,1800:. NW_016690221.1 3094484 . G A 257228 . AC=349;AF=0.213;AN=1636;BaseQRankSum=6.01;DP=40722;ExcessHet=0.0000;FS=8.781;InbreedingCoeff=0.1739;MLEAC=361;MLEAF=0.221;MQ=59.99;MQRankSum=0.00;QD=16.81;ReadPosRankSum=0.00;SOR=0.151 GT:AD:DP:GQ:PGT:PID:PL:PS 0|1:31,21:52:99:0|1:3094482_G_C:782,0,1238:3094482 0/0:50,0:50:99:.:.:0,120,1800:. 0/0:46,0:46:99:.:.:0,113,1279:. 0|1:23,26:49:99:0|1:3094482_G_C:1023,0,882:3094482 0/0:48,0:48:99:.:.:0,120,1800:. 0/1:28,18:46:99:.:.:417,0,660:. 0/0:49,0:49:99:.:.:0,120,1800:. 0/0:44,0:44:99:.:.:0,120,1800:. 0/1:20,29:49:99:.:.:745,0,422:. 0/0:48,0:48:99:.:.:0,120,1800:. 0/0:49,0:49:99:.:.:0,120,1800:. 1|1:0,51:51:99:1|1:3094482_G_C:2273,154,0:3094482 0/0:50,0:50:99:.:.:0,120,1800:. NW_016690221.1 3300595 . T C 72867.1 . AC=109;AF=0.067;AN=1632;BaseQRankSum=-5.584e+00;DP=39513;ExcessHet=0.0000;FS=0.000;InbreedingCoeff=0.3410;MLEAC=113;MLEAF=0.069;MQ=59.99;MQRankSum=0.00;QD=16.17;ReadPosRankSum=0.00;SOR=1.329 GT:AD:DP:GQ:PGT:PID:PL:PS 0/0:51,0:51:99:.:.:0,120,1800:. 0/0:50,0:50:99:.:.:0,120,1800:. 0/0:48,0:48:99:.:.:0,120,1800:. 0/1:23,28:51:99:.:.:569,0,882:. 1/1:0,47:47:99:.:.:1670,141,0:. 0|1:23,22:45:99:0|1:3300595_T_C:855,0,900:3300595 1/1:0,46:46:99:.:.:1216,138,0:. 0/0:49,0:49:99:.:.:0,120,1800:. 0/1:30,18:48:99:.:.:339,0,661:. 1/1:0,51:51:99:.:.:1335,153,0:. 0/1:31,22:53:99:.:.:410,0,687:. 1/1:0,54:54:99:.:.:1488,162,0:. 0/1:17,33:50:99:.:.:701,0,321:. NW_016690221.1 3875418 . C T 4099.77 . AC=9;AF=5.528e-03;AN=1628;BaseQRankSum=6.71;DP=39395;ExcessHet=0.0483;FS=0.000;InbreedingCoeff=0.5100;MLEAC=9;MLEAF=5.528e-03;MQ=60.00;MQRankSum=0.00;QD=10.30;ReadPosRankSum=0.00;SOR=0.616 GT:AD:DP:GQ:PL 0/0:50,0:50:99:0,120,1800 0/1:26,24:50:99:536,0,402 0/0:49,0:49:99:0,120,1800 0/1:29,21:50:99:452,0,537 0/1:28,22:50:99:463,0,501 0/0:46,0:46:99:0,120,1800 0/1:33,17:50:99:299,0,180 0/0:49,0:49:99:0,120,1312 0/0:49,0:49:99:0,120,1800 0/1:29,19:48:99:414,0,528 0/0:50,0:50:99:0,120,1800 0/0:48,0:48:99:0,120,1800 1/1:1,49:50:99:1287,127,0 NW_016690221.1 4046911 . G A 363507 . AC=455;AF=0.291;AN=1566;BaseQRankSum=5.99;DP=40705;ExcessHet=0.0000;FS=0.000;InbreedingCoeff=0.2569;MLEAC=498;MLEAF=0.318;MQ=60.00;MQRankSum=0.00;QD=20.75;ReadPosRankSum=0.00;SOR=0.767 GT:AD:DP:GQ:PGT:PID:PL:PS 1|1:0,51:51:99:1|1:4046911_G_A:1980,153,0:4046911 0|1:22,25:47:99:0|1:4046911_G_A:791,0,819:4046911 0|1:21,27:48:99:0|1:4046911_G_A:649,0,374:4046911 0|1:19,29:48:99:0|1:4046911_G_A:958,0,711:4046911 0/0:51,0:51:99:.:.:0,104,1361:. 0/0:50,0:50:99:.:.:0,120,1800:. 0|1:26,21:47:99:0|1:4046911_G_A:651,0,1008:4046911 1|1:1,45:46:93:1|1:4046911_G_A:1697,93,0:4046911 0|1:23,25:48:99:0|1:4046911_G_A:803,0,873:4046911 0|1:30,20:50:99:0|1:4046911_G_A:623,0,1172:4046911 1|1:0,44:44:99:1|1:4046911_G_A:1679,132,0:4046911 0|1:22,24:46:99:0|1:4046911_G_A:770,0,843:4046911 1|1:0,44:44:99:1|1:4046911_G_A:1626,132,0:4046911 NW_016690221.1 4654470 . G A 4458.84 . AC=8;AF=4.981e-03;AN=1606;BaseQRankSum=3.97;DP=37363;ExcessHet=0.0380;FS=0.000;InbreedingCoeff=0.5589;MLEAC=8;MLEAF=4.981e-03;MQ=60.00;MQRankSum=0.00;QD=13.51;ReadPosRankSum=0.00;SOR=0.646 GT:AD:DP:GQ:PGT:PID:PL:PS 0/0:45,0:45:99:.:.:0,120,1800:. 0/0:47,0:47:99:.:.:0,120,1800:. 0/0:47,0:47:99:.:.:0,120,1800:. 0/1:25,20:45:99:.:.:444,0,540:. 0/0:48,0:48:99:.:.:0,120,1800:. 0/0:42,0:42:99:.:.:0,115,1244:. 0/0:45,0:45:99:.:.:0,120,1800:. 1|1:0,48:48:99:1|1:4654462_A_G:2154,144,0:4654462 0/1:31,17:48:99:.:.:341,0,693:. 0/0:47,0:47:99:.:.:0,120,1800:. 0/1:23,22:45:99:.:.:496,0,522:. 0/1:34,14:48:99:.:.:281,0,832:. 0/0:24,0:24:72:.:.:0,72,592:. NW_016690222.1 1447150 . G T 6592.63 . AC=12;AF=7.380e-03;AN=1626;BaseQRankSum=2.99;DP=38700;ExcessHet=0.0891;FS=18.672;InbreedingCoeff=0.4917;MLEAC=12;MLEAF=7.380e-03;MQ=60.00;MQRankSum=0.00;QD=12.21;ReadPosRankSum=0.00;SOR=3.985 GT:AD:DP:GQ:PL 0/1:23,27:50:99:624,0,885 0/0:46,0:46:99:0,119,1412 0/0:49,0:49:99:0,119,1064 0/1:25,25:50:99:565,0,975 0/1:28,21:49:99:456,0,1113 0/1:23,24:47:99:563,0,894 0/1:29,20:49:99:425,0,1158 0/0:48,0:48:99:0,119,1491 1/1:1,49:50:99:1399,140,0 0/0:46,0:46:99:0,120,1800 0/0:48,0:48:99:0,110,1322 0/0:48,0:48:99:0,102,1238 0/1:22,27:49:99:626,0,843 NW_016690222.1 2205809 . C T 1925.57 . AC=3;AF=1.850e-03;AN=1622;BaseQRankSum=6.86;DP=39190;ExcessHet=3.0183;FS=0.000;InbreedingCoeff=0.5924;MLEAC=3;MLEAF=1.850e-03;MQ=60.00;MQRankSum=0.00;QD=12.84;ReadPosRankSum=0.00;SOR=0.775 GT:AD:DP:GQ:PL 0/0:49,0:49:99:0,120,1800 0/0:49,0:49:99:0,119,1179 0/0:49,0:49:99:0,120,1800 0/0:50,0:50:99:0,120,1800 0/0:49,0:49:99:0,120,1800 0/0:50,0:50:99:0,119,1466 0/0:46,0:46:99:0,120,1800 0/0:48,0:48:99:0,120,1800 0/1:19,31:50:99:834,0,395 0/0:49,0:49:99:0,120,1573 0/0:49,0:49:99:0,120,1800 0/1:26,24:50:99:607,0,590 0/1:27,23:50:99:557,0,622 NW_016690222.1 3689899 . C T 9198.31 . AC=13;AF=7.956e-03;AN=1634;BaseQRankSum=5.78;DP=39295;ExcessHet=0.0000;FS=0.000;InbreedingCoeff=0.6232;MLEAC=13;MLEAF=7.956e-03;MQ=60.00;MQRankSum=0.00;QD=21.15;ReadPosRankSum=0.00;SOR=2.243 GT:AD:DP:GQ:PL 0/0:50,0:50:99:0,120,1800 0/0:49,0:49:99:0,120,1800 0/0:50,0:50:99:0,120,1800 0/1:16,30:46:99:773,0,300 0/1:19,31:50:99:786,0,341 0/1:28,21:49:99:487,0,609 1/1:0,48:48:99:1522,144,0 1/1:0,48:48:99:1660,144,0 0/0:49,0:49:99:0,120,1800 0/0:49,0:49:99:0,119,1071 0/0:48,0:48:99:0,120,1800 0/0:50,0:50:99:0,110,1315 0/0:50,0:50:99:0,120,1800 NW_016690222.1 5591601 . C T 30920.3 . AC=51;AF=0.031;AN=1620;BaseQRankSum=6.00;DP=37019;ExcessHet=0.5165;FS=0.000;InbreedingCoeff=0.2634;MLEAC=53;MLEAF=0.033;MQ=59.99;MQRankSum=0.00;QD=13.12;ReadPosRankSum=0.00;SOR=4.256 GT:AD:DP:GQ:PGT:PID:PL:PS 0/1:29,20:49:99:.:.:405,0,582:. 0/1:24,26:50:99:.:.:587,0,471:. 0/1:25,25:50:99:.:.:564,0,550:. 0/1:33,16:49:99:.:.:292,0,699:. 0/0:44,0:44:99:.:.:0,104,1095:. 0/0:47,0:47:99:.:.:0,120,1800:. 0/1:18,31:49:99:.:.:726,0,334:. 0/1:22,24:46:99:.:.:546,0,450:. 0/1:20,28:48:99:.:.:653,0,389:. 0/1:25,26:51:99:.:.:593,0,493:. 0/0:48,0:48:99:.:.:0,120,1800:. 0/1:30,19:49:99:.:.:391,0,627:. 1|1:0,49:49:99:1|1:5591599_A_G:2199,147,0:5591599 NW_016690223.1 841289 . G A 21469.5 . AC=38;AF=0.023;AN=1624;BaseQRankSum=6.16;DP=37381;ExcessHet=0.1649;FS=0.000;InbreedingCoeff=0.3256;MLEAC=40;MLEAF=0.025;MQ=60.00;MQRankSum=0.00;QD=13.04;ReadPosRankSum=0.00;SOR=0.799 GT:AD:DP:GQ:PGT:PID:PL:PS 0/0:47,0:47:99:.:.:0,118,1200:. 0/0:49,0:49:99:.:.:0,120,1800:. 0/0:45,0:45:99:.:.:0,120,1800:. 0/0:50,0:50:99:.:.:0,120,1800:. 0|1:21,28:49:99:0|1:841289_G_A:658,0,254:841289 0/0:46,0:46:99:.:.:0,120,1800:. 0|1:23,23:46:99:0|1:841289_G_A:521,0,301:841289 0/1:20,30:50:50:.:.:681,0,50:. 0/0:45,0:45:99:.:.:0,101,1123:. 0/0:50,0:50:99:.:.:0,116,1348:. 0/0:46,0:46:99:.:.:0,103,1454:. 0/0:44,0:44:99:.:.:0,111,707:. 0/0:46,0:46:99:.:.:0,120,1800:. NW_016690223.1 1257032 . A C 366806 . AC=593;AF=0.372;AN=1596;BaseQRankSum=-5.900e-01;DP=37843;ExcessHet=-0.0000;FS=2.821;InbreedingCoeff=0.2909;MLEAC=631;MLEAF=0.395;MQ=60.00;MQRankSum=0.00;QD=18.16;ReadPosRankSum=0.00;SOR=0.343 GT:AD:DP:GQ:PGT:PID:PL:PS 1/1:0,63:63:99:.:.:2067,189,0:. 1/1:0,30:30:90:.:.:920,90,0:. 1/1:0,45:45:99:.:.:1275,133,0:. 1|1:0,49:49:99:1|1:1257032_A_C:2176,147,0:1257032 1/1:0,49:49:99:.:.:2012,147,0:. 1|1:0,48:48:99:1|1:1257032_A_C:2138,144,0:1257032 1|1:1,16:17:6:1|1:1257032_A_C:675,6,0:1257032 0/1:40,10:50:99:.:.:134,0,1016:. 0|1:47,8:55:99:0|1:1257032_A_C:194,0,1949:1257032 0|1:48,13:61:99:0|1:1257032_A_C:401,0,1976:1257032 1/1:0,49:49:99:.:.:2132,147,0:. 0|1:48,10:58:99:0|1:1257032_A_C:275,0,1985:1257032 0/1:35,14:49:99:.:.:248,0,841:. NW_016690223.1 2324117 . G A 16022.7 . AC=28;AF=0.017;AN=1628;BaseQRankSum=2.26;DP=39035;ExcessHet=4.0361;FS=0.000;InbreedingCoeff=0.3072;MLEAC=29;MLEAF=0.018;MQ=60.00;MQRankSum=0.00;QD=11.56;ReadPosRankSum=0.00;SOR=2.062 GT:AD:DP:GQ:PL 0/0:49,0:49:99:0,120,1800 0/0:49,0:49:99:0,120,1800 0/0:49,0:49:99:0,120,1800 0/0:49,0:49:99:0,120,1401 0/0:49,0:49:99:0,120,1800 0/0:49,0:49:99:0,102,1278 0/0:49,0:49:99:0,120,1800 0/1:25,24:49:99:565,0,547 0/0:50,0:50:99:0,120,1800 0/1:19,31:50:99:762,0,391 0/0:49,0:49:99:0,110,1386 0/0:50,0:50:99:0,120,1800 0/1:22,26:48:99:603,0,846 NW_016690223.1 2760329 . C T 186093 . AC=303;AF=0.188;AN=1612;BaseQRankSum=6.05;DP=38947;ExcessHet=0.0000;FS=2.033;InbreedingCoeff=0.1880;MLEAC=318;MLEAF=0.197;MQ=60.00;MQRankSum=0.00;QD=14.58;ReadPosRankSum=0.00;SOR=0.278 GT:AD:DP:GQ:PGT:PID:PL:PS 0/0:49,0:49:99:.:.:0,112,1490:. 0/0:48,0:48:99:.:.:0,120,1800:. 0/0:47,0:47:99:.:.:0,116,1303:. 0/1:27,22:49:99:.:.:466,0,531:. 0/0:47,0:47:99:.:.:0,119,1247:. 0/1:31,19:50:99:.:.:341,0,645:. 1/1:0,49:49:99:.:.:1503,147,0:. 0/0:48,0:48:99:.:.:0,120,1800:. 0/1:26,24:50:99:.:.:540,0,568:. 0/1:28,20:48:99:.:.:416,0,602:. 0/0:45,0:45:99:.:.:0,102,886:. 0/0:49,0:49:99:.:.:0,107,1260:. 0/1:25,24:49:99:.:.:502,0,528:. NW_016690223.1 2909923 . A G 2416.22 . AC=5;AF=3.067e-03;AN=1630;BaseQRankSum=-5.894e+00;DP=39058;ExcessHet=0.0134;FS=0.000;InbreedingCoeff=0.5892;MLEAC=5;MLEAF=3.067e-03;MQ=60.00;MQRankSum=0.00;QD=12.27;ReadPosRankSum=0.00;SOR=0.927 GT:AD:DP:GQ:PL 0/0:49,0:49:99:0,119,1366 0/1:35,14:49:99:221,0,920 0/0:49,0:49:99:0,117,1463 0/0:49,0:49:99:0,120,1337 0/0:49,0:49:99:0,120,1800 0/0:49,0:49:99:0,120,1544 1/1:0,49:49:99:1359,147,0 0/0:49,0:49:99:0,119,1471 0/0:48,0:48:99:0,120,1800 0/0:46,0:46:99:0,111,1291 0/1:26,24:50:99:533,0,641 0/0:49,0:49:99:0,120,1800 0/0:49,0:49:99:0,120,1800 NW_016690223.1 3007527 . G A 9734.89 . AC=12;AF=7.538e-03;AN=1592;BaseQRankSum=6.74;DP=38807;ExcessHet=0.0000;FS=0.000;InbreedingCoeff=0.5986;MLEAC=13;MLEAF=8.166e-03;MQ=60.00;MQRankSum=0.00;QD=22.12;ReadPosRankSum=0.00;SOR=1.631 GT:AD:DP:GQ:PGT:PID:PL:PS 0/0:50,0:50:99:.:.:0,119,1517:. 0/0:49,0:49:99:.:.:0,120,1800:. 0/0:49,0:49:99:.:.:0,115,1405:. 0/1:33,17:50:99:.:.:370,0,179:. 0/0:48,0:48:99:.:.:0,120,1800:. 0/0:48,0:48:99:.:.:0,120,1800:. 0/1:21,28:49:63:.:.:647,0,63:. 0/0:49,0:49:99:.:.:0,120,1270:. 0/1:20,30:50:49:.:.:719,0,49:. 0/0:49,0:49:99:.:.:0,120,1800:. 0/0:49,0:49:99:.:.:0,119,1037:. 0/0:47,0:47:99:.:.:0,120,1800:. 0/1:24,26:50:89:.:.:608,0,89:. NW_016690223.1 3362377 . A G 23564.5 . AC=26;AF=0.016;AN=1624;BaseQRankSum=-6.350e+00;DP=40237;ExcessHet=0.0000;FS=0.000;InbreedingCoeff=0.6422;MLEAC=27;MLEAF=0.017;MQ=60.00;MQRankSum=0.00;QD=25.15;ReadPosRankSum=0.00;SOR=1.775 GT:AD:DP:GQ:PGT:PID:PL:PS 0/0:50,0:50:99:.:.:0,119,1800:. 0/1:48,53:101:99:.:.:888,0,1100:. 0/0:49,0:49:99:.:.:0,120,1800:. 0/0:47,0:47:99:.:.:0,120,1800:. 0/1:24,27:51:99:.:.:447,0,507:. 0/1:28,19:47:99:.:.:702,0,1111:. 1|1:1,46:47:96:1|1:3362377_A_G:2025,96,0:3362377 0/0:50,0:50:99:.:.:0,120,1800:. 1|1:0,48:49:99:1|1:3362377_A_G:2156,144,0:3362377 0/1:31,18:50:99:.:.:262,0,724:. 0/1:24,26:50:99:.:.:802,0,920:. 1|1:0,48:49:99:1|1:3362377_A_G:2160,144,0:3362377 1|1:0,51:51:99:1|1:3362377_A_G:2263,153,0:3362377 NW_016690223.1 3860937 . C T 10819.7 . AC=16;AF=9.975e-03;AN=1604;BaseQRankSum=6.05;DP=36790;ExcessHet=0.0000;FS=0.000;InbreedingCoeff=0.6014;MLEAC=17;MLEAF=0.011;MQ=60.00;MQRankSum=0.00;QD=20.07;ReadPosRankSum=0.00;SOR=2.135 GT:AD:DP:GQ:PGT:PID:PL:PS 1/1:1,48:49:99:.:.:1344,123,0:. 0/1:21,31:52:99:.:.:719,0,270:. 0/1:23,26:49:99:.:.:596,0,369:. 0/0:48,0:48:99:.:.:0,120,1800:. 0/0:48,0:48:99:.:.:0,104,1404:. 0/0:48,0:48:99:.:.:0,120,1800:. 0/0:47,0:47:99:.:.:0,117,1319:. 0/0:48,0:48:99:.:.:0,116,1364:. 0/0:48,0:48:99:.:.:0,120,1800:. 0/0:49,0:49:99:.:.:0,120,1800:. 0|1:22,28:50:99:0|1:3860935_T_C:1097,0,793:3860935 0/0:47,0:47:99:.:.:0,117,1351:. 0/0:49,0:49:99:.:.:0,120,1800:. NW_016690223.1 4343455 . C T 53278.2 . AC=97;AF=0.060;AN=1628;BaseQRankSum=6.37;DP=39583;ExcessHet=0.0000;FS=0.000;InbreedingCoeff=0.3197;MLEAC=101;MLEAF=0.062;MQ=60.00;MQRankSum=0.00;QD=13.07;ReadPosRankSum=0.00;SOR=0.887 GT:AD:DP:GQ:PGT:PID:PL:PS 0/1:30,20:50:99:.:.:398,0,532:. 0/1:27,23:50:99:.:.:490,0,119:. 1/1:0,47:47:99:.:.:1254,140,0:. 1/1:0,49:49:99:.:.:1310,147,0:. 1/1:0,50:50:99:.:.:1295,150,0:. 1/1:0,49:50:99:.:.:1263,145,0:. 0/1:27,23:50:99:.:.:460,0,120:. 1/1:1,49:50:99:.:.:1281,139,0:. 1/1:0,49:50:99:.:.:1305,147,0:. 0/1:28,22:50:99:.:.:445,0,129:. 1/1:0,49:50:99:.:.:1279,147,0:. 1/1:0,50:50:99:.:.:1270,148,0:. 1/1:0,50:50:99:.:.:1307,150,0:. NW_016690223.1 4441685 . T C 10013 . AC=11;AF=6.832e-03;AN=1610;BaseQRankSum=-5.726e+00;DP=34895;ExcessHet=0.0008;FS=0.000;InbreedingCoeff=0.5360;MLEAC=12;MLEAF=7.453e-03;MQ=60.00;MQRankSum=0.00;QD=22.35;ReadPosRankSum=0.00;SOR=1.244 GT:AD:DP:GQ:PGT:PID:PL:PS 0/0:48,0:48:99:.:.:0,111,1348:. 0/0:50,0:50:99:.:.:0,120,1800:. 0/1:20,29:49:99:.:.:730,0,506:. 1|1:0,51:51:99:1|1:4441685_T_C:2251,154,0:4441685 0/0:47,0:47:99:.:.:0,120,1800:. 1|1:0,49:49:99:1|1:4441685_T_C:2178,147,0:4441685 0/1:26,23:49:99:.:.:844,0,1013:. 0/0:46,0:46:99:.:.:0,101,1165:. 0/0:46,0:46:99:.:.:0,120,1414:. 0/0:47,0:47:99:.:.:0,117,1257:. 0/0:50,0:50:99:.:.:0,120,1800:. 0/0:54,0:54:99:.:.:0,120,1800:. 0/0:48,0:48:99:.:.:0,116,1176:. NW_016690223.1 5152505 . T A 428325 . AC=661;AF=0.413;AN=1602;BaseQRankSum=6.35;DP=36803;ExcessHet=0.0000;FS=2.571;InbreedingCoeff=0.1738;MLEAC=698;MLEAF=0.436;MQ=60.00;MQRankSum=0.00;QD=19.11;ReadPosRankSum=0.00;SOR=0.108 GT:AD:DP:GQ:PGT:PID:PL:PS 1|1:0,48:48:99:1|1:5152505_T_A:2156,144,0:5152505 0/0:49,0:49:99:.:.:0,120,1800:. 0|1:31,19:50:99:0|1:5152505_T_A:705,0,1219:5152505 0|1:31,19:50:99:0|1:5152505_T_A:704,0,1244:5152505 1/1:0,47:47:99:.:.:1357,140,0:. 0/1:28,22:50:99:.:.:522,0,626:. 0/1:26,22:48:99:.:.:489,0,575:. 1/1:0,40:40:99:.:.:1204,120,0:. 0/1:28,19:47:99:.:.:460,0,690:. 1|1:0,48:48:99:1|1:5152505_T_A:1808,144,0:5152505 1|1:0,46:46:99:1|1:5152505_T_A:1747,138,0:5152505 0/0:49,0:49:99:.:.:0,120,1800:. 0/0:49,0:49:99:.:.:0,120,1800:. NW_016690224.1 3179329 . A G 849631 . AC=666;AF=0.410;AN=1624;BaseQRankSum=-4.011e+00;DP=63973;ExcessHet=0.0000;FS=0.553;InbreedingCoeff=0.2018;MLEAC=691;MLEAF=0.425;MQ=60.00;MQRankSum=0.00;QD=17.83;ReadPosRankSum=-6.830e-01;SOR=0.631 GT:AD:DP:GQ:PGT:PID:PL:PS 0/0:49,0:49:99:.:.:0,119,1433:. 0/1:43,53:96:99:.:.:1129,0,987:. 0/1:52,43:95:99:.:.:985,0,1346:. 0/0:49,0:49:99:.:.:0,107,1469:. 0/1:51,48:99:99:.:.:1003,0,1220:. 0/0:50,0:50:99:.:.:0,120,1800:. 0/0:50,0:50:99:.:.:0,120,1800:. 0/1:54,44:98:99:.:.:816,0,1177:. 0/1:33,67:100:99:.:.:1447,0,665:. 0/1:47,48:95:99:.:.:988,0,1157:. 0/0:49,0:49:99:.:.:0,120,1800:. 1/1:0,98:98:99:.:.:2616,294,0:. 0/0:50,0:50:99:.:.:0,119,1571:. NW_016690251.1 1068986 . C T 2620.14 . AC=4;AF=2.509e-03;AN=1594;BaseQRankSum=6.66;DP=36435;ExcessHet=3.0267;FS=0.000;InbreedingCoeff=0.5768;MLEAC=4;MLEAF=2.509e-03;MQ=60.00;MQRankSum=0.00;QD=13.72;ReadPosRankSum=0.00;SOR=0.768 GT:AD:DP:GQ:PL 0/0:48,0:48:99:0,112,1314 0/0:47,0:47:99:0,118,1346 0/0:47,0:47:99:0,120,1800 0/0:48,0:48:99:0,120,1800 0/0:48,0:48:99:0,120,1800 0/0:44,0:44:99:0,114,1115 0/0:49,0:49:99:0,120,1800 0/0:21,0:21:63:0,63,498 0/1:16,31:47:99:899,0,579 0/0:46,0:46:99:0,107,1294 0/0:50,0:50:99:0,120,1800 0/1:21,26:48:99:706,0,804 0/1:32,16:49:99:364,0,1290 NW_016690251.1 2476458 . T A 56573.6 . AC=100;AF=0.062;AN=1622;BaseQRankSum=-3.664e+00;DP=37591;ExcessHet=0.0000;FS=0.000;InbreedingCoeff=0.2983;MLEAC=104;MLEAF=0.064;MQ=60.00;MQRankSum=0.00;QD=12.80;ReadPosRankSum=0.669;SOR=0.546 GT:AD:DP:GQ:PGT:PID:PL:PS 1/1:0,51:51:99:.:.:1367,153,0:. 1/1:0,41:42:99:.:.:1076,123,0:. 1/1:0,43:43:99:.:.:1095,127,0:. 1/1:0,46:46:99:.:.:1213,138,0:. 1/1:0,46:46:99:.:.:1182,137,0:. 1/1:0,50:50:99:.:.:1246,149,0:. 1/1:0,45:45:99:.:.:1069,133,0:. 0/1:16,11:27:99:.:.:207,0,365:. 1/1:0,28:28:83:.:.:708,83,0:. 1/1:0,42:42:99:.:.:1021,123,0:. 0/1:29,19:48:99:.:.:341,0,653:. 0/1:18,30:48:99:.:.:577,0,377:. 1/1:0,43:43:99:.:.:1080,128,0:. NW_016690251.1 2734816 . C T 6441.69 . AC=10;AF=6.127e-03;AN=1632;BaseQRankSum=5.75;DP=41084;ExcessHet=3.1308;FS=0.000;InbreedingCoeff=0.4454;MLEAC=10;MLEAF=6.127e-03;MQ=60.00;MQRankSum=0.00;QD=12.25;ReadPosRankSum=0.00;SOR=0.502 GT:AD:DP:GQ:PL 0/0:50,0:50:99:0,105,1426 0/0:50,0:50:99:0,120,1306 0/0:50,0:50:99:0,120,1800 0/1:28,36:64:99:899,0,616 0/0:50,0:50:99:0,120,1800 0/0:51,0:51:99:0,120,1800 0/1:22,28:50:99:713,0,482 0/1:30,23:53:99:588,0,724 0/0:49,0:49:99:0,120,1391 0/0:51,0:51:99:0,120,1800 0/0:50,0:50:99:0,120,1800 0/0:52,0:52:99:0,118,1680 0/0:53,0:53:99:0,120,1800 NW_016690251.1 2991396 . A C 1333.36 . AC=6;AF=3.695e-03;AN=1624;BaseQRankSum=-6.612e+00;DP=36989;ExcessHet=3.0505;FS=0.000;InbreedingCoeff=0.4574;MLEAC=6;MLEAF=3.695e-03;MQ=60.00;MQRankSum=0.00;QD=4.52;ReadPosRankSum=0.00;SOR=0.770 GT:AD:DP:GQ:PL 0/1:24,26:50:99:492,0,608 0/0:50,0:50:99:0,120,1800 0/0:49,0:49:99:0,120,1360 0/0:47,0:47:99:0,118,1089 0/0:50,0:50:99:0,120,1800 0/0:50,0:50:99:0,120,1800 0/1:22,25:47:99:108,0,463 0/0:48,0:48:99:0,117,1443 0/0:49,0:49:99:0,112,1407 0/0:49,0:49:99:0,120,1271 0/1:24,25:49:99:102,0,551 0/0:49,0:49:99:0,118,1263 0/1:32,17:49:22:22,0,776 NW_016690251.1 4376585 . A C 126140 . AC=250;AF=0.155;AN=1610;BaseQRankSum=-6.314e+00;DP=32877;ExcessHet=0.0000;FS=0.000;InbreedingCoeff=0.2765;MLEAC=262;MLEAF=0.163;MQ=59.99;MQRankSum=0.00;QD=14.47;ReadPosRankSum=0.00;SOR=0.329 GT:AD:DP:GQ:PGT:PID:PL:PS 0/1:19,31:50:99:.:.:629,0,435:. 1/1:0,49:49:99:.:.:1301,147,0:. 0/0:49,0:49:99:.:.:0,117,1374:. 0/1:27,22:49:99:.:.:438,0,703:. 0/0:50,0:50:99:.:.:0,120,1800:. 0/0:49,0:49:99:.:.:0,120,1800:. 0/0:49,0:49:99:.:.:0,118,1221:. 0/0:47,0:47:99:.:.:0,116,1177:. 0/0:50,0:50:99:.:.:0,120,1800:. 1/1:0,49:49:99:.:.:1351,147,0:. 0/0:49,0:49:99:.:.:0,120,1800:. 0/0:49,0:49:99:.:.:0,120,1800:. 0/0:52,0:52:99:.:.:0,120,1800:. NW_016690225.1 240795 . G A 2044.41 . AC=4;AF=2.454e-03;AN=1630;BaseQRankSum=6.09;DP=41610;ExcessHet=3.0263;FS=0.000;InbreedingCoeff=0.5287;MLEAC=4;MLEAF=2.454e-03;MQ=60.00;MQRankSum=0.00;QD=10.54;ReadPosRankSum=0.824;SOR=0.477 GT:AD:DP:GQ:PGT:PID:PL:PS 0/0:51,0:51:99:.:.:0,120,1800:. 0/0:52,0:52:99:.:.:0,115,1275:. 0/0:49,0:49:99:.:.:0,120,1800:. 0/0:52,0:52:99:.:.:0,120,1800:. 0/0:56,0:56:99:.:.:0,102,1653:. 0/0:51,0:51:99:.:.:0,120,1800:. 0/0:48,0:48:99:.:.:0,120,1800:. 0/1:26,20:46:99:.:.:417,0,515:. 0/0:47,0:47:99:.:.:0,115,1300:. 0/1:31,19:50:99:.:.:377,0,648:. 0/1:25,24:49:99:.:.:499,0,495:. 0/0:52,0:52:99:.:.:0,120,1800:. 0/0:51,0:51:99:.:.:0,120,1800:. NW_016690225.1 3451824 . C T 77963.7 . AC=70;AF=0.043;AN=1628;BaseQRankSum=6.78;DP=43074;ExcessHet=-0.0000;FS=34.676;InbreedingCoeff=0.8194;MLEAC=73;MLEAF=0.045;MQ=60.00;MQRankSum=0.00;QD=33.91;ReadPosRankSum=0.00;SOR=3.611 GT:AD:DP:GQ:PGT:PID:PL:PS 1|1:0,50:50:99:1|1:3451815_C_A:2242,151,0:3451815 1|1:0,48:48:99:1|1:3451815_C_A:2160,144,0:3451815 1|1:0,51:51:99:1|1:3451815_C_A:2295,154,0:3451815 1|1:0,50:50:99:1|1:3451815_C_A:2243,151,0:3451815 1|1:0,51:51:99:1|1:3451815_C_A:2295,154,0:3451815 1|1:0,49:49:99:1|1:3451815_C_A:2202,147,0:3451815 0/1:31,19:50:99:.:.:414,0,159:. 0/0:54,0:54:99:.:.:0,120,1800:. 1|1:0,55:55:99:1|1:3451815_C_A:2453,166,0:3451815 0|1:31,17:48:99:0|1:3451824_C_T:621,0,1045:3451824 1|1:0,50:50:99:1|1:3451815_C_A:2242,151,0:3451815 1|1:0,53:53:99:1|1:3451815_C_A:2368,160,0:3451815 1|1:0,56:56:99:1|1:3451815_C_A:2506,169,0:3451815 NW_016690225.1 4527808 . C T 20345.8 . AC=22;AF=0.014;AN=1622;BaseQRankSum=4.05;DP=37958;ExcessHet=0.0000;FS=0.000;InbreedingCoeff=0.5466;MLEAC=23;MLEAF=0.014;MQ=60.00;MQRankSum=0.00;QD=27.49;ReadPosRankSum=0.00;SOR=1.763 GT:AD:DP:GQ:PGT:PID:PL:PS 1|1:1,43:44:99:1|1:4527808_C_T:1907,105,0:4527808 1|1:0,45:45:99:1|1:4527808_C_T:2025,135,0:4527808 0|1:27,19:46:99:0|1:4527808_C_T:717,0,1075:4527808 0/0:49,0:49:99:.:.:0,120,1800:. 0/0:48,0:48:99:.:.:0,120,1800:. 0|1:19,27:46:99:0|1:4527808_C_T:1031,0,550:4527808 0/1:23,26:49:99:.:.:566,0,108:. 0|1:17,32:49:99:0|1:4527808_C_T:1290,0,618:4527808 1|1:0,43:43:99:1|1:4527808_C_T:1935,129,0:4527808 0/0:52,0:52:99:.:.:0,120,1800:. 0|1:23,24:47:99:0|1:4527808_C_T:851,0,775:4527808 1|1:0,47:47:99:1|1:4527808_C_T:2115,141,0:4527808 0|1:27,20:47:99:0|1:4527808_C_T:756,0,1070:4527808 NW_016690226.1 110932 . A G 9676.13 . AC=13;AF=7.985e-03;AN=1628;BaseQRankSum=-5.580e+00;DP=37949;ExcessHet=0.0017;FS=3.595;InbreedingCoeff=0.5123;MLEAC=14;MLEAF=8.600e-03;MQ=60.00;MQRankSum=0.00;QD=19.01;ReadPosRankSum=0.00;SOR=1.362 GT:AD:DP:GQ:PGT:PID:PL:PS 0/0:46,0:46:99:.:.:0,111,1525:. 0|1:25,23:48:99:0|1:110932_A_G:891,0,981:110932 0/0:45,0:45:99:.:.:0,107,1450:. 0/0:47,0:47:99:.:.:0,120,1800:. 0/0:47,0:47:99:.:.:0,108,1392:. 1|1:0,48:48:99:1|1:110932_A_G:2138,144,0:110932 0/0:48,0:48:99:.:.:0,110,1250:. 0/0:48,0:48:99:.:.:0,99,1229:. 0/1:23,24:47:99:.:.:549,0,549:. 0/0:50,0:50:99:.:.:0,120,1800:. 0/0:46,0:46:99:.:.:0,104,1296:. 0/0:48,0:48:99:.:.:0,120,1800:. 0/0:50,0:50:99:.:.:0,120,1800:. NW_016690226.1 1288452 . G A 14565.8 . AC=14;AF=8.589e-03;AN=1630;BaseQRankSum=4.52;DP=39143;ExcessHet=0.0000;FS=4.179;InbreedingCoeff=0.5338;MLEAC=15;MLEAF=9.202e-03;MQ=60.00;MQRankSum=0.00;QD=16.76;ReadPosRankSum=-2.280e-01;SOR=0.901 GT:AD:DP:GQ:PGT:PID:PL:PS 0/0:49,0:49:99:.:.:0,113,1594:. 0/0:47,0:47:99:.:.:0,120,1800:. 0/0:49,0:49:99:.:.:0,120,1800:. 0/0:46,0:46:99:.:.:0,120,1800:. 0/0:49,0:49:99:.:.:0,108,1475:. 1/1:0,99:99:99:.:.:3017,298,0:. 0/0:49,0:49:99:.:.:0,103,1375:. 0/0:49,0:49:99:.:.:0,119,1301:. 0/0:48,0:48:99:.:.:0,119,1382:. 0/1:44,53:97:99:.:.:1301,0,960:. 0/0:50,0:50:99:.:.:0,120,1800:. 0/0:48,0:48:99:.:.:0,113,1343:. 0/0:49,0:49:99:.:.:0,119,1070:. NW_016690226.1 2159684 . A G 52081 . AC=87;AF=0.054;AN=1626;BaseQRankSum=-9.130e-01;DP=37742;ExcessHet=0.0006;FS=0.000;InbreedingCoeff=0.2698;MLEAC=91;MLEAF=0.056;MQ=60.00;MQRankSum=0.00;QD=14.08;ReadPosRankSum=0.00;SOR=0.721 GT:AD:DP:GQ:PGT:PID:PL:PS 1/1:0,48:48:99:.:.:1416,144,0:. 0/0:50,0:50:99:.:.:0,120,1800:. 0/1:27,23:50:99:.:.:488,0,600:. 0/0:49,0:49:99:.:.:0,116,1379:. 0/0:48,0:48:99:.:.:0,120,1800:. 0/0:47,0:47:99:.:.:0,120,1800:. 0/0:48,0:48:99:.:.:0,117,1349:. 0/0:49,0:49:99:.:.:0,120,1267:. 0/0:48,0:48:99:.:.:0,120,1800:. 0/0:47,0:47:99:.:.:0,120,1800:. 0/0:48,0:48:99:.:.:0,119,1385:. 0/0:49,0:49:99:.:.:0,116,1460:. 0/0:48,0:48:99:.:.:0,120,1800:. NW_016690227.1 733877 . G T 74495.6 . AC=131;AF=0.081;AN=1616;BaseQRankSum=-3.900e-01;DP=38663;ExcessHet=0.0002;FS=0.000;InbreedingCoeff=0.2409;MLEAC=136;MLEAF=0.084;MQ=60.00;MQRankSum=0.00;QD=13.36;ReadPosRankSum=0.00;SOR=0.463 GT:AD:DP:GQ:PGT:PID:PL:PS 0/1:24,25:49:99:.:.:530,0,513:. 0/1:26,21:47:99:.:.:425,0,554:. 0/1:29,20:49:99:.:.:407,0,629:. 0/0:47,0:47:99:.:.:0,118,1450:. 0/0:49,0:49:99:.:.:0,120,1281:. 0/0:47,0:47:99:.:.:0,119,1414:. 0/0:47,0:47:99:.:.:0,120,1800:. 0/0:48,0:48:99:.:.:0,118,1166:. 0/0:49,0:49:99:.:.:0,118,1337:. 0/0:49,0:49:99:.:.:0,107,1428:. 0/0:48,0:48:99:.:.:0,120,1800:. 0/0:49,0:49:99:.:.:0,120,1555:. 0/0:48,0:48:99:.:.:0,118,1500:. NW_016690227.1 1591865 . T C 17513.2 . AC=30;AF=0.018;AN=1626;BaseQRankSum=-5.658e+00;DP=39494;ExcessHet=0.6201;FS=0.000;InbreedingCoeff=0.3383;MLEAC=31;MLEAF=0.019;MQ=60.00;MQRankSum=0.00;QD=12.17;ReadPosRankSum=0.00;SOR=0.104 GT:AD:DP:GQ:PGT:PID:PL:PS 0/0:52,0:52:99:.:.:0,108,1388:. 0/0:50,0:50:99:.:.:0,120,1800:. 0/0:49,0:49:99:.:.:0,104,1335:. 0/1:23,27:50:99:.:.:542,0,514:. 0/1:25,26:51:99:.:.:530,0,589:. 0/0:51,0:51:99:.:.:0,110,1358:. 0/0:48,0:48:99:.:.:0,120,1800:. 0/0:48,0:48:99:.:.:0,117,1391:. 0/0:50,0:50:99:.:.:0,120,1800:. 0/0:51,0:51:99:.:.:0,120,1800:. 0/0:50,0:50:99:.:.:0,120,1800:. 0/0:50,0:50:99:.:.:0,120,1800:. 0/1:29,23:52:99:.:.:519,0,717:. NW_016690227.1 1779041 . G A 90985.5 . AC=113;AF=0.069;AN=1634;BaseQRankSum=6.62;DP=40392;ExcessHet=-0.0000;FS=8.953;InbreedingCoeff=0.6209;MLEAC=116;MLEAF=0.071;MQ=60.00;MQRankSum=0.00;QD=23.14;ReadPosRankSum=0.00;SOR=0.015 GT:AD:DP:GQ:PGT:PID:PL:PS 0/1:17,28:46:99:.:.:726,0,337:. 0/0:50,0:50:99:.:.:0,117,1392:. 0/0:48,0:48:99:.:.:0,120,1800:. 0/1:21,29:50:99:.:.:743,0,430:. 1/1:0,50:50:99:.:.:1538,150,0:. 0/1:22,27:49:99:.:.:710,0,503:. 0/1:28,22:50:99:.:.:501,0,625:. 0/0:50,0:50:99:.:.:0,120,1800:. 0/0:51,0:51:99:.:.:0,120,1800:. 0/1:23,25:48:99:.:.:624,0,517:. 0|1:22,24:46:99:0|1:1779041_G_A:942,0,852:1779041 0/0:49,0:49:99:.:.:0,120,1800:. 0/0:49,0:49:99:.:.:0,120,1800:. NW_016690227.1 1994741 . T A 20402.5 . AC=33;AF=0.020;AN=1630;BaseQRankSum=-5.455e+00;DP=39709;ExcessHet=0.0932;FS=0.000;InbreedingCoeff=0.3371;MLEAC=34;MLEAF=0.021;MQ=60.00;MQRankSum=0.00;QD=13.18;ReadPosRankSum=0.00;SOR=0.462 GT:AD:DP:GQ:PGT:PID:PL:PS 0/1:25,24:49:99:.:.:563,0,640:. 0/1:21,29:50:99:.:.:684,0,471:. 1/1:0,50:50:99:.:.:1487,150,0:. 0/1:28,20:48:99:.:.:428,0,665:. 0/0:48,0:48:99:.:.:0,120,1800:. 0/0:47,0:47:99:.:.:0,115,1063:. 0/0:49,0:49:99:.:.:0,120,1800:. 0/0:47,0:47:99:.:.:0,99,727:. 0/0:50,0:50:99:.:.:0,118,1461:. 0/1:26,24:50:99:.:.:578,0,698:. 0|1:29,21:50:99:0|1:1994733_A_T:794,0,1154:1994733 0/0:48,0:48:99:.:.:0,120,1349:. 0/0:49,0:49:99:.:.:0,120,1800:. NW_016690227.1 2235655 . T C 9182.29 . AC=20;AF=0.012;AN=1618;BaseQRankSum=-6.716e+00;DP=38473;ExcessHet=0.0000;FS=0.000;InbreedingCoeff=0.5723;MLEAC=21;MLEAF=0.013;MQ=60.00;MQRankSum=0.00;QD=12.29;ReadPosRankSum=0.00;SOR=1.597 GT:AD:DP:GQ:PL 0/0:50,0:50:99:0,120,1800 0/0:47,0:47:99:0,120,1800 0/0:48,0:48:99:0,118,1526 0/0:49,0:49:99:0,119,1414 0/0:48,0:48:99:0,117,1362 0/0:50,0:50:99:0,119,1084 0/0:49,0:49:99:0,120,1800 1/1:0,50:50:99:1186,150,0 1/1:0,49:49:99:508,126,0 0/1:19,31:50:99:554,0,395 0/0:47,0:47:99:0,110,1296 1/1:0,50:50:99:1135,149,0 1/1:0,50:50:99:1114,149,0 NW_016690227.1 3096336 . C T 77536.7 . AC=107;AF=0.066;AN=1624;BaseQRankSum=5.06;DP=34168;ExcessHet=0.0000;FS=0.000;InbreedingCoeff=0.3814;MLEAC=110;MLEAF=0.068;MQ=60.00;MQRankSum=0.00;QD=20.06;ReadPosRankSum=0.00;SOR=1.119 GT:AD:DP:GQ:PGT:PID:PL:PS 1|1:1,42:43:99:1|1:3096336_C_T:1869,111,0:3096336 0/1:30,13:43:99:.:.:225,0,656:. 0/1:21,21:42:99:.:.:495,0,417:. 0/0:46,0:46:99:.:.:0,120,1800:. 0/0:45,0:45:99:.:.:0,120,1800:. 0/0:47,0:47:99:.:.:0,115,1499:. 0/1:30,15:45:99:.:.:281,0,635:. 1|1:0,47:47:99:1|1:3096336_C_T:2081,141,0:3096336 0/1:24,22:46:99:.:.:450,0,497:. 0/1:19,27:46:99:.:.:589,0,345:. 1|1:0,46:46:99:1|1:3096336_C_T:2059,138,0:3096336 1|1:0,50:50:99:1|1:3096336_C_T:2232,151,0:3096336 0/1:26,21:47:99:.:.:423,0,511:. NW_016690228.1 1327396 . C T 27640.8 . AC=43;AF=0.026;AN=1624;BaseQRankSum=6.52;DP=39263;ExcessHet=0.2677;FS=0.000;InbreedingCoeff=0.2960;MLEAC=44;MLEAF=0.027;MQ=60.00;MQRankSum=0.00;QD=13.85;ReadPosRankSum=0.00;SOR=0.686 GT:AD:DP:GQ:PL 0/0:48,0:48:99:0,118,1389 0/1:22,27:49:99:673,0,460 0/0:49,0:49:99:0,120,1314 0/0:49,0:49:99:0,120,1800 0/0:49,0:49:99:0,120,1800 0/0:49,0:49:99:0,120,1329 0/1:28,21:49:99:497,0,626 0/0:49,0:49:99:0,120,1800 0/1:26,24:50:99:606,0,595 0/0:49,0:49:99:0,115,1371 0/0:49,0:49:99:0,112,1387 0/1:26,24:50:99:607,0,595 0/0:48,0:48:99:0,120,1800 NW_016690228.1 1735725 . C T 387148 . AC=387;AF=0.246;AN=1574;BaseQRankSum=5.47;DP=36579;ExcessHet=-0.0000;FS=0.000;InbreedingCoeff=0.4849;MLEAC=418;MLEAF=0.266;MQ=60.00;MQRankSum=0.00;QD=30.03;ReadPosRankSum=0.00;SOR=0.756 GT:AD:DP:GQ:PGT:PID:PL:PS 0/0:50,0:50:99:.:.:0,120,1800:. 0|1:22,28:50:99:0|1:1735702_A_G:1109,0,839:1735702 0/0:50,0:50:99:.:.:0,120,1800:. 0/0:50,0:50:99:.:.:0,120,1800:. 0|1:26,24:50:99:0|1:1735702_A_G:926,0,1019:1735702 0/0:50,0:50:99:.:.:0,120,1800:. 0/0:49,0:49:99:.:.:0,120,1800:. 0/0:49,0:49:99:.:.:0,120,1800:. 0/0:49,0:49:99:.:.:0,120,1800:. 0|1:19,30:49:99:0|1:1735702_A_G:1203,0,708:1735702 0|1:29,21:50:99:0|1:1735702_A_G:794,0,1154:1735702 0/0:49,0:49:99:.:.:0,120,1558:. 0/0:50,0:50:99:.:.:0,120,1800:. NW_016690228.1 2165230 . G A 3143.34 . AC=3;AF=1.832e-03;AN=1638;BaseQRankSum=6.34;DP=39533;ExcessHet=0.0040;FS=0.000;InbreedingCoeff=0.6279;MLEAC=3;MLEAF=1.832e-03;MQ=60.00;MQRankSum=0.00;QD=31.75;ReadPosRankSum=0.00;SOR=2.424 GT:AD:DP:GQ:PGT:PID:PL:PS 0/0:50,0:50:99:.:.:0,118,1275:. 0/0:49,0:49:99:.:.:0,120,1800:. 0/0:50,0:50:99:.:.:0,120,1800:. 0/0:50,0:50:99:.:.:0,120,1800:. 0/0:50,0:50:99:.:.:0,120,1800:. 0/0:50,0:50:99:.:.:0,120,1800:. 0/0:49,0:49:99:.:.:0,119,1400:. 0/0:49,0:49:99:.:.:0,120,1800:. 0|1:23,27:50:99:0|1:2165230_G_A:1017,0,870:2165230 0/0:50,0:50:99:.:.:0,120,1800:. 0/0:50,0:50:99:.:.:0,120,1800:. 0/0:49,0:49:99:.:.:0,120,1800:. 1|1:0,49:49:99:1|1:2165230_G_A:2205,147,0:2165230 NW_016690228.1 4173063 . A G 3596.71 . AC=5;AF=3.090e-03;AN=1618;BaseQRankSum=-6.765e+00;DP=38999;ExcessHet=3.0372;FS=0.000;InbreedingCoeff=0.5280;MLEAC=5;MLEAF=3.090e-03;MQ=60.00;MQRankSum=0.00;QD=14.68;ReadPosRankSum=0.00;SOR=0.638 GT:AD:DP:GQ:PGT:PID:PL:PS 0/0:49,0:49:99:.:.:0,120,1800:. 0|1:21,28:49:99:0|1:4173063_A_G:882,0,792:4173063 0/0:49,0:49:99:.:.:0,120,1800:. 0/1:29,20:49:99:.:.:636,0,1151:. 0/0:50,0:50:99:.:.:0,120,1800:. 0/0:50,0:50:99:.:.:0,120,1800:. 0|1:28,22:50:99:0|1:4173063_A_G:667,0,1110:4173063 0|1:21,26:47:99:0|1:4173063_A_G:831,0,804:4173063 0/0:50,0:50:99:.:.:0,120,1800:. 0/0:50,0:50:99:.:.:0,120,1800:. 0/1:27,23:50:99:.:.:690,0,1065:. 0/0:50,0:50:99:.:.:0,120,1800:. 0/0:50,0:50:99:.:.:0,120,1800:. NW_016690228.1 5255049 . C T 422569 . AC=516;AF=0.319;AN=1616;BaseQRankSum=5.56;DP=45126;ExcessHet=0.0000;FS=0.000;InbreedingCoeff=0.2536;MLEAC=539;MLEAF=0.334;MQ=60.00;MQRankSum=0.00;QD=17.24;ReadPosRankSum=-2.110e-01;SOR=1.398 GT:AD:DP:GQ:PGT:PID:PL:PS 0/1:45,49:94:99:.:.:1039,0,796:. 1/1:0,49:49:99:.:.:1330,146,0:. 1/1:0,46:46:99:.:.:1256,138,0:. 0/1:49,45:94:99:.:.:947,0,985:. 0/1:46,47:93:99:.:.:1010,0,1710:. 1/1:1,45:46:99:.:.:1322,128,0:. 0/1:48,49:97:99:.:.:988,0,1024:. 1/1:0,47:47:99:.:.:1338,140,0:. 1/1:0,49:49:99:.:.:1364,146,0:. 1/1:0,48:48:99:.:.:1326,143,0:. 1/1:1,48:49:99:.:.:1316,136,0:. 1/1:0,50:50:99:.:.:1394,149,0:. 1/1:0,45:45:99:.:.:1313,135,0:. NW_016690229.1 117570 . C T 24196.3 . AC=37;AF=0.023;AN=1618;BaseQRankSum=6.17;DP=39314;ExcessHet=0.0000;FS=0.000;InbreedingCoeff=0.4469;MLEAC=39;MLEAF=0.024;MQ=60.00;MQRankSum=0.00;QD=15.45;ReadPosRankSum=0.00;SOR=1.266 GT:AD:DP:GQ:PGT:PID:PL:PS 0/0:49,0:49:99:.:.:0,120,1800:. 0/0:49,0:49:99:.:.:0,120,1800:. 0/0:50,0:50:99:.:.:0,120,1800:. 0/0:49,0:49:99:.:.:0,120,1800:. 0/0:48,0:48:99:.:.:0,120,1800:. 0/0:49,0:49:99:.:.:0,120,1800:. 0/0:50,0:50:99:.:.:0,120,1218:. 0/0:50,0:50:99:.:.:0,115,1394:. 0/1:20,29:49:99:.:.:664,0,735:. 0/1:21,29:50:99:.:.:709,0,433:. 0/0:49,0:49:99:.:.:0,120,1800:. 0/1:32,18:50:99:.:.:366,0,695:. 1/1:1,49:50:99:.:.:1379,123,0:. NW_016690229.1 1674941 . T C 523171 . 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AC=756;AF=0.473;AN=1598;BaseQRankSum=-5.780e+00;DP=38756;ExcessHet=0.0023;FS=2.622;InbreedingCoeff=0.1210;MLEAC=799;MLEAF=0.500;MQ=60.00;MQRankSum=0.00;QD=19.07;ReadPosRankSum=0.00;SOR=0.070 GT:AD:DP:GQ:PGT:PID:PL:PS 0/1:23,25:48:99:.:.:576,0,559:. 0/1:18,32:50:99:.:.:740,0,378:. 0/1:22,28:50:99:.:.:655,0,504:. 0/1:23,27:50:99:.:.:627,0,536:. 0/1:23,24:47:99:.:.:551,0,544:. 1/1:0,49:49:99:.:.:1705,147,0:. 0/1:25,24:49:99:.:.:542,0,622:. 0/0:49,0:49:99:.:.:0,120,1800:. 0/1:24,25:49:99:.:.:574,0,584:. 0/1:27,23:50:99:.:.:531,0,669:. 0/1:26,22:48:99:.:.:488,0,629:. 1/1:0,50:50:99:.:.:1432,150,0:. 0/0:50,0:50:99:.:.:0,120,1800:. NW_016690229.1 3326284 . G A 1.2041e+06 . 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AC=18;AF=0.011;AN=1636;BaseQRankSum=-4.645e+00;DP=40597;ExcessHet=0.0000;FS=0.000;InbreedingCoeff=0.5909;MLEAC=19;MLEAF=0.012;MQ=60.00;MQRankSum=0.00;QD=14.96;ReadPosRankSum=0.492;SOR=0.658 GT:AD:DP:GQ:PL 0/1:55,46:101:99:881,0,1205 0/0:48,0:48:99:0,115,967 0/0:49,0:49:99:0,120,1800 1/1:1,95:96:99:2523,258,0 0/0:48,0:48:99:0,120,1800 1/1:1,98:99:99:2620,267,0 0/0:48,0:48:99:0,120,1800 0/0:50,0:50:99:0,120,1800 0/0:50,0:50:99:0,120,1800 0/0:50,0:50:99:0,120,1800 0/0:49,0:49:99:0,120,1800 0/0:50,0:50:99:0,115,1405 0/0:49,0:49:99:0,120,1800 NW_016690230.1 1346515 . T C 9058.41 . AC=18;AF=0.011;AN=1620;BaseQRankSum=-6.153e+00;DP=39680;ExcessHet=0.0000;FS=0.000;InbreedingCoeff=0.6318;MLEAC=19;MLEAF=0.012;MQ=60.00;MQRankSum=0.00;QD=15.17;ReadPosRankSum=0.00;SOR=1.617 GT:AD:DP:GQ:PGT:PID:PL:PS 0/0:49,0:49:99:.:.:0,120,1800:. 0/1:30,20:50:99:.:.:383,0,707:. 0/1:29,21:50:99:.:.:407,0,677:. 1/1:2,48:50:93:.:.:1193,93,0:. 0/1:24,26:50:99:.:.:571,0,562:. 1/1:0,49:49:99:.:.:1356,147,0:. 0/1:25,25:50:99:.:.:491,0,542:. 0/0:48,0:48:99:.:.:0,120,1800:. 0/0:49,0:49:99:.:.:0,120,1800:. 0/0:49,0:49:99:.:.:0,120,1800:. 0/0:52,0:52:99:.:.:0,120,1800:. 0/0:50,0:50:99:.:.:0,120,1800:. 0/0:50,0:50:99:.:.:0,118,1028:. NW_016690230.1 1643968 . T C 516.29 . AC=4;AF=2.457e-03;AN=1628;BaseQRankSum=-6.497e+00;DP=40016;ExcessHet=0.0080;FS=0.000;InbreedingCoeff=0.6225;MLEAC=4;MLEAF=2.457e-03;MQ=60.00;MQRankSum=0.00;QD=3.44;ReadPosRankSum=0.00;SOR=1.457 GT:AD:DP:GQ:PL 0/0:50,0:50:99:0,110,1277 0/0:50,0:50:99:0,117,1391 0/0:49,0:49:99:0,120,1800 0/0:38,0:38:99:0,105,885 0/0:49,0:49:99:0,117,1052 0/0:41,0:41:99:0,105,1068 0/0:51,0:51:99:0,120,1800 0/0:48,0:48:99:0,110,1283 0/1:28,21:49:62:62,0,690 0/0:49,0:49:99:0,120,1485 0/0:51,0:51:99:0,120,1800 0/1:24,27:51:99:116,0,560 1/1:1,49:50:98:436,98,0 NW_016690230.1 1832475 . G A 139491 . AC=169;AF=0.105;AN=1614;BaseQRankSum=6.31;DP=37538;ExcessHet=-0.0000;FS=14.442;InbreedingCoeff=0.5051;MLEAC=178;MLEAF=0.110;MQ=60.00;MQRankSum=0.00;QD=21.39;ReadPosRankSum=0.00;SOR=0.082 GT:AD:DP:GQ:PGT:PID:PL:PS 1/1:0,45:45:99:.:.:1289,135,0:. 0/0:49,0:49:99:.:.:0,103,1231:. 0/1:23,23:46:92:.:.:533,0,92:. 0/0:49,0:49:99:.:.:0,120,1800:. 0/0:47,0:47:99:.:.:0,113,1426:. 0/0:48,0:48:99:.:.:0,120,1800:. 0/0:49,0:49:99:.:.:0,115,1375:. 0/0:47,0:47:99:.:.:0,100,861:. 1/1:0,49:49:99:.:.:1495,147,0:. 0/0:49,0:49:99:.:.:0,120,1490:. 0/0:50,0:50:99:.:.:0,120,1800:. 0/1:24,25:49:92:.:.:649,0,92:. 0/1:25,27:52:93:.:.:648,0,93:. NW_016690230.1 2708403 . G A 3358.55 . 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AC=577;AF=0.360;AN=1604;BaseQRankSum=-6.366e+00;DP=38914;ExcessHet=0.0000;FS=0.000;InbreedingCoeff=0.5012;MLEAC=608;MLEAF=0.379;MQ=60.00;MQRankSum=0.00;QD=16.75;ReadPosRankSum=0.00;SOR=1.310 GT:AD:DP:GQ:PGT:PID:PL:PS 1/1:0,48:48:99:.:.:1185,144,0:. 1/1:0,50:50:99:.:.:476,127,0:. 1/1:0,49:49:99:.:.:1162,147,0:. 1/1:0,48:48:99:.:.:497,124,0:. 1/1:0,49:49:99:.:.:1163,147,0:. 0|1:33,17:50:99:0|1:332187_T_C:614,0,1320:332187 1/1:1,49:50:99:.:.:439,101,0:. 1/1:0,48:49:99:.:.:1500,144,0:. 0/1:24,22:46:99:.:.:365,0,549:. 1/1:0,48:48:99:.:.:1077,143,0:. 0/1:28,22:50:99:.:.:351,0,650:. 1/1:0,48:48:99:.:.:1138,144,0:. 1/1:0,47:47:99:.:.:1100,140,0:. NW_016690233.1 2874008 . A G 5661.33 . AC=10;AF=6.510e-03;AN=1536;BaseQRankSum=-5.562e+00;DP=36777;ExcessHet=3.1423;FS=0.000;InbreedingCoeff=0.4218;MLEAC=12;MLEAF=7.813e-03;MQ=60.00;MQRankSum=0.00;QD=11.65;ReadPosRankSum=0.00;SOR=0.718 GT:AD:DP:GQ:PL 0/0:50,0:50:99:0,120,1800 0/1:27,24:51:99:575,0,671 0/1:23,24:47:99:573,0,540 0/0:50,0:50:0:0,0,31 0/1:25,24:49:99:565,0,619 0/1:24,24:48:99:562,0,592 0/0:50,0:50:99:0,120,1800 0/1:25,22:47:99:491,0,598 0/0:49,0:49:99:0,120,1800 0/0:48,0:48:99:0,120,1800 0/0:49,0:49:99:0,120,1800 0/0:49,0:49:99:0,108,1377 0/0:49,0:49:99:0,120,1278 NW_016690233.1 3597246 . G A 13385.5 . AC=16;AF=9.852e-03;AN=1624;BaseQRankSum=3.40;DP=34934;ExcessHet=0.0000;FS=0.000;InbreedingCoeff=0.6133;MLEAC=17;MLEAF=0.010;MQ=60.00;MQRankSum=0.00;QD=25.30;ReadPosRankSum=0.00;SOR=2.979 GT:AD:DP:GQ:PGT:PID:PL:PS 0/1:30,21:51:99:.:.:460,0,677:. 0/0:46,0:46:99:.:.:0,102,1233:. 0/0:47,0:47:99:.:.:0,120,1800:. 0/0:46,0:46:99:.:.:0,120,1800:. 0|1:27,23:50:99:0|1:3597227_T_C:859,0,1039:3597227 0/0:47,0:47:99:.:.:0,114,1290:. 0/0:47,0:47:99:.:.:0,120,1800:. 0/0:46,0:46:99:.:.:0,120,1800:. 1|1:0,50:50:99:1|1:3597246_G_A:2235,151,0:3597246 0/0:49,0:49:99:.:.:0,120,1800:. 0/0:49,0:49:99:.:.:0,113,1409:. 1|1:0,50:51:99:1|1:3597246_G_A:2221,151,0:3597246 1|1:0,49:49:99:1|1:3597246_G_A:2181,147,0:3597246 NW_016690233.1 3993428 . C T 37756.7 . AC=63;AF=0.039;AN=1634;BaseQRankSum=5.38;DP=38157;ExcessHet=0.0000;FS=1.800;InbreedingCoeff=0.5402;MLEAC=65;MLEAF=0.040;MQ=60.00;MQRankSum=0.00;QD=16.52;ReadPosRankSum=0.00;SOR=1.420 GT:AD:DP:GQ:PL 0/1:23,24:47:99:456,0,378 0/0:49,0:49:99:0,120,1406 0/0:48,0:48:99:0,107,1354 0/1:27,22:49:99:500,0,520 0/0:47,0:47:99:0,120,1800 0/0:48,0:48:99:0,111,1159 0/0:47,0:47:99:0,112,1187 0/0:47,0:47:99:0,115,1150 0/0:48,0:48:99:0,118,1302 0/0:50,0:50:99:0,120,1800 0/0:48,0:48:99:0,119,1467 0/0:49,0:49:99:0,111,1134 0/1:28,19:47:99:413,0,563 NW_016690233.1 4462239 . T C 116245 . AC=151;AF=0.093;AN=1616;BaseQRankSum=-5.545e+00;DP=36577;ExcessHet=0.0000;FS=0.000;InbreedingCoeff=0.3648;MLEAC=158;MLEAF=0.098;MQ=60.00;MQRankSum=0.00;QD=20.70;ReadPosRankSum=0.00;SOR=0.992 GT:AD:DP:GQ:PGT:PID:PL:PS 1/1:0,50:50:99:.:.:1695,150,0:. 0/1:24,27:51:99:.:.:578,0,842:. 0/1:32,18:50:99:.:.:362,0,1290:. 0|1:36,14:50:99:0|1:4462226_C_T:479,0,1469:4462226 0/0:50,0:50:99:.:.:0,119,1502:. 1|1:0,49:49:99:1|1:4462239_T_C:1916,147,0:4462239 0|1:22,27:49:99:0|1:4462239_T_C:788,0,802:4462239 1|1:1,49:50:99:1|1:4462239_T_C:2139,106,0:4462239 0/1:30,19:49:99:.:.:376,0,744:. 1|1:0,50:50:99:1|1:4462239_T_C:1833,150,0:4462239 1/1:0,50:50:99:.:.:2072,150,0:. 1/1:0,51:51:99:.:.:1387,153,0:. 1|1:0,50:50:99:1|1:4462239_T_C:2217,151,0:4462239 NW_016690234.1 3585497 . C T 746384 . AC=683;AF=0.450;AN=1518;BaseQRankSum=6.82;DP=43643;ExcessHet=0.0000;FS=0.000;InbreedingCoeff=0.3600;MLEAC=758;MLEAF=0.499;MQ=60.00;MQRankSum=0.00;QD=29.00;ReadPosRankSum=0.00;SOR=0.423 GT:AD:DP:GQ:PGT:PID:PL:PS 0/0:54,0:54:99:.:.:0,120,1800:. 0/1:22,33:55:99:.:.:1320,0,694:. 1|1:0,54:54:99:1|1:3585497_C_T:2430,163,0:3585497 0/1:32,23:55:99:.:.:526,0,154:. 0/0:54,0:54:99:.:.:0,120,1800:. 0/0:51,0:51:99:.:.:0,120,1800:. 0/1:28,26:54:99:.:.:635,0,117:. 0/0:52,0:52:99:.:.:0,120,1800:. 0/0:53,0:53:99:.:.:0,120,1800:. 0/1:27,25:52:99:.:.:598,0,113:. 0/1:26,25:51:99:.:.:617,0,106:. 0/0:53,0:53:99:.:.:0,120,1800:. 0/0:51,0:51:99:.:.:0,120,1800:. NW_016690235.1 1864927 . G A 5258.62 . AC=8;AF=4.908e-03;AN=1630;BaseQRankSum=6.64;DP=38852;ExcessHet=0.0000;FS=0.000;InbreedingCoeff=0.6568;MLEAC=8;MLEAF=4.908e-03;MQ=60.00;MQRankSum=0.00;QD=21.46;ReadPosRankSum=0.00;SOR=2.579 GT:AD:DP:GQ:PL 0/0:48,0:48:99:0,112,1301 1/1:0,49:49:99:1491,146,0 1/1:0,48:48:99:1430,143,0 0/0:49,0:49:99:0,120,1461 0/0:48,0:48:99:0,116,1294 0/0:49,0:49:99:0,120,1421 0/1:31,19:50:99:416,0,689 0/0:50,0:50:99:0,120,1488 0/0:48,0:48:99:0,120,1800 0/0:48,0:48:99:0,120,1800 0/0:47,0:47:99:0,120,1800 0/0:48,0:48:99:0,107,1373 0/0:49,0:49:99:0,120,1800 NW_016690235.1 3762050 . C T 2427.41 . AC=4;AF=2.460e-03;AN=1626;BaseQRankSum=4.61;DP=40042;ExcessHet=0.0080;FS=0.000;InbreedingCoeff=0.6055;MLEAC=4;MLEAF=2.460e-03;MQ=60.00;MQRankSum=0.00;QD=15.97;ReadPosRankSum=0.966;SOR=1.488 GT:AD:DP:GQ:PL 0/0:50,0:50:99:0,120,1800 1/1:0,45:45:99:1264,135,0 0/1:29,25:54:99:535,0,649 0/0:51,0:51:99:0,99,1354 0/0:50,0:50:99:0,112,1271 0/0:58,0:58:99:0,106,1427 0/0:50,0:50:99:0,120,1800 0/0:48,0:48:99:0,120,1800 0/0:50,0:50:99:0,113,1272 0/0:49,0:49:99:0,119,1290 0/0:51,0:51:99:0,120,1800 0/0:51,0:51:99:0,112,1275 0/0:47,0:47:99:0,118,1327 NW_016690235.1 4065107 . T C 4486.19 . AC=6;AF=3.690e-03;AN=1626;BaseQRankSum=-6.352e+00;DP=38454;ExcessHet=0.0201;FS=0.000;InbreedingCoeff=0.5723;MLEAC=6;MLEAF=3.690e-03;MQ=60.00;MQRankSum=0.00;QD=13.04;ReadPosRankSum=9.85;SOR=1.041 GT:AD:DP:GQ:PL 0/0:50,0:50:99:0,120,1800 1/1:0,43:43:99:1208,129,0 0/1:47,51:98:99:1099,0,1136 0/0:49,0:49:99:0,106,1226 0/0:48,0:48:99:0,119,1439 0/1:21,29:50:99:693,0,494 0/0:48,0:48:99:0,120,1800 0/0:49,0:49:99:0,120,1800 0/0:51,0:51:99:0,118,1375 0/0:49,0:49:99:0,117,1386 0/0:49,0:49:99:0,105,1441 0/0:49,0:49:99:0,117,1254 0/0:50,0:50:99:0,106,1639 NW_016690236.1 679888 . A C 2306.19 . AC=4;AF=2.448e-03;AN=1634;BaseQRankSum=0.364;DP=39298;ExcessHet=3.0263;FS=0.000;InbreedingCoeff=0.5510;MLEAC=4;MLEAF=2.448e-03;MQ=60.00;MQRankSum=0.00;QD=11.95;ReadPosRankSum=0.00;SOR=0.834 GT:AD:DP:GQ:PL 0/1:28,20:50:99:445,0,665 0/0:49,0:49:99:0,120,1800 0/0:49,0:49:99:0,120,1800 0/0:50,0:50:99:0,120,1800 0/1:24,26:50:99:645,0,604 0/0:48,0:48:99:0,117,1459 0/0:48,0:48:99:0,114,1265 0/0:49,0:49:99:0,120,1598 0/0:49,0:49:99:0,119,1361 0/1:23,26:49:99:623,0,531 0/0:49,0:49:99:0,115,1318 0/0:49,0:49:99:0,120,1800 0/0:47,0:47:99:0,116,1415 NW_016690236.1 1055181 . G A 11171.4 . AC=13;AF=8.025e-03;AN=1620;BaseQRankSum=4.76;DP=39612;ExcessHet=0.0018;FS=0.000;InbreedingCoeff=0.5385;MLEAC=14;MLEAF=8.642e-03;MQ=60.00;MQRankSum=0.00;QD=20.96;ReadPosRankSum=0.00;SOR=0.841 GT:AD:DP:GQ:PGT:PID:PL:PS 0|1:28,19:47:99:0|1:1055181_G_A:708,0,1119:1055181 0/0:49,0:49:99:.:.:0,120,1800:. 0|1:27,22:49:99:0|1:1055181_G_A:843,0,1068:1055181 1|1:0,49:49:99:1|1:1055181_G_A:2197,147,0:1055181 1|1:0,49:49:99:1|1:1055181_G_A:2157,147,0:1055181 0/0:50,0:50:99:.:.:0,120,1800:. 0|1:26,19:45:99:0|1:1055181_G_A:706,0,1035:1055181 0/0:50,0:50:99:.:.:0,120,1800:. 0/0:50,0:50:99:.:.:0,120,1800:. 0|1:26,21:47:99:0|1:1055181_G_A:804,0,1029:1055181 0/0:51,0:51:99:.:.:0,120,1800:. 0/0:50,0:50:99:.:.:0,120,1800:. 0/0:49,0:49:99:.:.:0,120,1800:. NW_016690236.1 1239082 . G A 3099.01 . AC=5;AF=3.106e-03;AN=1610;BaseQRankSum=4.96;DP=38592;ExcessHet=0.0000;FS=0.000;InbreedingCoeff=0.6046;MLEAC=5;MLEAF=3.106e-03;MQ=60.00;MQRankSum=0.00;QD=20.94;ReadPosRankSum=0.00;SOR=2.995 GT:AD:DP:GQ:PL 0/0:49,0:49:99:0,120,1800 0/0:50,0:50:99:0,120,1800 0/0:50,0:50:99:0,120,1800 0/0:49,0:49:99:0,120,1800 0/1:27,23:50:99:456,0,518 0/0:50,0:50:99:0,120,1800 0/0:50,0:50:99:0,120,1800 0/0:49,0:49:99:0,120,1800 0/0:50,0:50:99:0,120,1800 1/1:0,50:50:99:1399,149,0 1/1:0,48:48:99:1365,144,0 0/0:49,0:49:99:0,120,1800 0/0:50,0:50:99:0,115,1363 NW_016690236.1 1327757 . T C 4799.85 . AC=6;AF=3.654e-03;AN=1642;BaseQRankSum=-1.590e-01;DP=36778;ExcessHet=3.0501;FS=0.000;InbreedingCoeff=0.4555;MLEAC=6;MLEAF=3.654e-03;MQ=60.00;MQRankSum=0.00;QD=11.82;ReadPosRankSum=-9.040e-01;SOR=0.708 GT:AD:DP:GQ:PL 0/0:36,0:36:99:0,108,957 0/0:48,0:48:99:0,100,1172 0/0:35,0:35:99:0,105,956 0/0:47,0:47:99:0,111,1219 0/0:40,0:40:99:0,118,978 0/0:35,0:35:99:0,105,933 0/0:47,0:47:99:0,110,1015 0/1:51,48:99:99:1094,0,1209 0/1:26,25:51:99:534,0,576 0/0:50,0:50:99:0,120,1800 0/1:27,23:51:99:514,0,640 0/0:48,0:48:99:0,99,1350 0/0:47,0:47:99:0,116,1312 NW_016690236.1 3881711 . C T 9150.42 . AC=15;AF=9.282e-03;AN=1616;BaseQRankSum=6.42;DP=40335;ExcessHet=0.0000;FS=0.000;InbreedingCoeff=0.5269;MLEAC=16;MLEAF=9.901e-03;MQ=60.00;MQRankSum=0.00;QD=15.00;ReadPosRankSum=0.00;SOR=1.024 GT:AD:DP:GQ:PL 0/1:25,27:52:99:696,0,556 0/1:32,19:51:99:428,0,698 0/1:31,19:50:99:422,0,736 0/1:23,27:50:99:680,0,482 0/0:44,0:44:99:0,119,1248 1/1:1,54:55:99:1600,154,0 0/0:49,0:49:99:0,118,1448 0/0:50,0:50:99:0,119,1271 0/0:49,0:49:99:0,104,1261 0/0:50,0:50:99:0,120,1800 0/1:32,18:50:99:419,0,796 0/0:51,0:51:99:0,120,1800 0/0:47,0:47:99:0,120,1800 NW_016690236.1 4196038 . A G 18068.2 . AC=63;AF=0.039;AN=1626;BaseQRankSum=-6.357e+00;DP=39151;ExcessHet=-0.0000;FS=4.221;InbreedingCoeff=0.7683;MLEAC=65;MLEAF=0.040;MQ=60.00;MQRankSum=0.00;QD=9.46;ReadPosRankSum=0.00;SOR=0.010 GT:AD:DP:GQ:PGT:PID:PL:PS 1/1:0,47:47:99:.:.:447,120,0:. 1/1:0,52:52:99:.:.:528,133,0:. 1/1:0,50:50:99:.:.:476,127,0:. 0/1:19,28:47:99:.:.:138,0,418:. 0/1:23,27:50:99:.:.:119,0,523:. 1/1:0,50:50:99:.:.:476,127,0:. 1/1:0,50:50:99:.:.:476,127,0:. 0/0:49,0:49:99:.:.:0,119,1308:. 0/0:47,0:47:99:.:.:0,120,1800:. 0/0:50,0:50:99:.:.:0,116,1426:. 0/0:48,0:48:99:.:.:0,119,1412:. 0/0:49,0:49:99:.:.:0,119,1274:. 0/0:49,0:49:99:.:.:0,120,1800:. NW_016690236.1 5166836 . C T 9600.64 . AC=17;AF=0.010;AN=1630;BaseQRankSum=5.56;DP=37156;ExcessHet=0.1851;FS=0.000;InbreedingCoeff=0.4281;MLEAC=18;MLEAF=0.011;MQ=59.98;MQRankSum=0.00;QD=12.78;ReadPosRankSum=0.00;SOR=0.802 GT:AD:DP:GQ:PL 0/0:48,0:48:99:0,102,785 0/0:46,0:46:99:0,118,1316 0/0:48,0:48:99:0,120,1800 0/0:46,0:46:99:0,120,1800 0/0:49,0:49:99:0,109,1207 0/0:46,0:46:99:0,120,1800 0/0:47,0:47:99:0,120,1342 0/1:24,20:44:99:452,0,534 0/0:48,0:48:99:0,112,1380 0/1:23,28:51:99:704,0,499 0/0:48,0:48:99:0,107,1204 1/1:0,49:49:99:1488,147,0 0/0:47,0:47:99:0,120,1615 NW_016690237.1 633907 . A G 4965.06 . AC=34;AF=0.021;AN=1626;BaseQRankSum=-6.409e+00;DP=39221;ExcessHet=0.0005;FS=0.000;InbreedingCoeff=0.4027;MLEAC=35;MLEAF=0.022;MQ=60.00;MQRankSum=0.00;QD=3.41;ReadPosRankSum=0.00;SOR=0.819 GT:AD:DP:GQ:PL 0/0:49,0:49:99:0,120,1800 0/0:49,0:49:99:0,114,1342 0/0:47,0:47:99:0,118,1346 0/0:49,0:49:99:0,120,1800 0/0:49,0:49:99:0,116,1259 0/0:48,0:48:99:0,120,1800 0/0:48,0:48:99:0,120,1800 0/0:45,0:45:99:0,117,1269 0/1:27,19:46:52:52,0,678 0/0:50,0:50:99:0,120,1800 0/1:22,26:48:99:115,0,516 1/1:0,49:50:99:466,125,0 0/1:30,20:50:49:49,0,771 NW_016690237.1 1524171 . C T 4997.34 . AC=11;AF=6.748e-03;AN=1630;BaseQRankSum=5.18;DP=39380;ExcessHet=0.0739;FS=0.000;InbreedingCoeff=0.4960;MLEAC=11;MLEAF=6.748e-03;MQ=60.00;MQRankSum=0.00;QD=10.39;ReadPosRankSum=0.00;SOR=0.665 GT:AD:DP:GQ:PL 0/0:53,0:53:99:0,120,1800 0/0:47,0:47:99:0,120,1800 0/1:25,24:49:99:540,0,459 0/1:24,25:49:99:570,0,444 0/0:48,0:48:99:0,120,1800 0/0:50,0:50:99:0,114,1505 0/1:27,22:49:99:446,0,161 1/1:1,47:48:99:1240,117,0 0/0:52,0:52:99:0,120,1431 0/0:54,0:54:99:0,120,1800 0/1:33,17:50:99:315,0,536 0/0:45,0:45:99:0,120,1800 0/0:49,0:49:99:0,120,1800 NW_016690237.1 2399319 . G A 50184.2 . AC=85;AF=0.052;AN=1634;BaseQRankSum=5.49;DP=37839;ExcessHet=0.0112;FS=0.000;InbreedingCoeff=0.2251;MLEAC=87;MLEAF=0.053;MQ=60.00;MQRankSum=0.00;QD=13.43;ReadPosRankSum=0.00;SOR=0.245 GT:AD:DP:GQ:PGT:PID:PL:PS 0/0:46,0:46:99:.:.:0,110,1237:. 0/0:47,0:47:99:.:.:0,103,1155:. 0/0:46,0:46:99:.:.:0,115,1238:. 0/0:46,0:46:99:.:.:0,120,1800:. 0/0:47,0:47:99:.:.:0,120,1800:. 0/0:46,0:46:99:.:.:0,120,1800:. 0/0:43,0:43:99:.:.:0,105,1209:. 0/1:24,21:45:99:.:.:517,0,594:. 0/1:30,19:49:99:.:.:451,0,701:. 0/1:23,24:47:99:.:.:591,0,503:. 0/1:21,28:49:99:.:.:734,0,465:. 0/0:49,0:49:99:.:.:0,120,1800:. 0/0:47,0:47:99:.:.:0,107,1402:. NW_016690237.1 2935774 . G A 9513.22 . AC=13;AF=8.145e-03;AN=1596;BaseQRankSum=6.24;DP=38239;ExcessHet=0.0000;FS=0.000;InbreedingCoeff=0.6197;MLEAC=14;MLEAF=8.772e-03;MQ=60.00;MQRankSum=0.00;QD=21.23;ReadPosRankSum=0.00;SOR=2.468 GT:AD:DP:GQ:PL 0/0:50,0:50:99:0,120,1800 1/1:0,50:50:99:1567,150,0 1/1:0,50:50:99:1516,150,0 0/1:20,30:50:99:768,0,400 0/0:49,0:49:99:0,120,1800 0/1:25,25:50:99:642,0,569 0/0:49,0:49:99:0,120,1800 0/0:50,0:50:99:0,120,1800 0/0:50,0:50:99:0,120,1800 0/0:49,0:49:99:0,120,1800 0/0:50,0:50:99:0,118,1117 0/0:50,0:50:99:0,120,1800 0/0:49,0:49:99:0,120,1800 NW_016690237.1 3015225 . T C 1868 . AC=3;AF=1.866e-03;AN=1608;BaseQRankSum=-6.400e+00;DP=37992;ExcessHet=0.0041;FS=0.000;InbreedingCoeff=0.5853;MLEAC=3;MLEAF=1.866e-03;MQ=60.00;MQRankSum=0.00;QD=19.26;ReadPosRankSum=0.00;SOR=2.930 GT:AD:DP:GQ:PL 0/0:49,0:49:99:0,120,1800 1/1:0,50:50:99:1337,150,0 0/0:50,0:50:99:0,119,1116 0/1:18,29:47:99:609,0,377 0/0:49,0:49:99:0,120,1800 0/0:48,0:48:99:0,120,1800 0/0:48,0:48:99:0,120,1353 0/0:50,0:50:99:0,120,1800 0/0:49,0:49:99:0,120,1800 0/0:49,0:49:99:0,103,1272 0/0:49,0:49:99:0,120,1546 0/0:47,0:47:99:0,114,993 0/0:49,0:49:99:0,117,1328 NW_016690237.1 4965971 . G A 84918.5 . AC=111;AF=0.068;AN=1628;BaseQRankSum=6.05;DP=38831;ExcessHet=0.0070;FS=0.000;InbreedingCoeff=0.2078;MLEAC=116;MLEAF=0.071;MQ=59.99;MQRankSum=0.00;QD=17.00;ReadPosRankSum=0.00;SOR=0.779 GT:AD:DP:GQ:PGT:PID:PL:PS 0/1:28,25:53:99:.:.:658,0,636:. 1|1:0,51:51:99:1|1:4965971_G_A:2225,153,0:4965971 0/1:28,22:50:99:.:.:522,0,675:. 1|1:0,49:49:99:1|1:4965971_G_A:2180,147,0:4965971 0/1:26,25:51:99:.:.:605,0,568:. 0|1:28,24:52:99:0|1:4965971_G_A:918,0,1082:4965971 1|1:0,49:49:99:1|1:4965971_G_A:2196,147,0:4965971 0/0:44,0:44:99:.:.:0,120,1800:. 1|1:0,52:52:99:1|1:4965971_G_A:2279,156,0:4965971 0/0:52,0:52:99:.:.:0,120,1800:. 0/1:27,23:50:99:.:.:554,0,624:. 0/0:49,0:49:99:.:.:0,120,1800:. 0/0:48,0:48:99:.:.:0,120,1800:. NW_016690237.1 5096141 . A G 35285.8 . 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AC=360;AF=0.222;AN=1624;BaseQRankSum=-6.527e+00;DP=39386;ExcessHet=0.0335;FS=0.000;InbreedingCoeff=0.1110;MLEAC=374;MLEAF=0.230;MQ=60.00;MQRankSum=0.00;QD=4.49;ReadPosRankSum=0.00;SOR=0.853 GT:AD:DP:GQ:PGT:PID:PL:PS 0/1:17,33:50:99:.:.:179,0,630:. 0/1:20,30:50:99:.:.:149,0,443:. 0/1:23,25:48:99:.:.:105,0,555:. 1/1:0,50:50:99:.:.:476,127,0:. 0/0:48,0:48:99:.:.:0,120,1800:. 0/1:23,27:50:99:.:.:119,0,545:. 0/1:23,25:48:99:.:.:105,0,527:. 1/1:0,49:49:99:.:.:466,125,0:. 0/0:49,0:49:99:.:.:0,119,1337:. 0/1:18,32:50:99:.:.:169,0,382:. 0/1:25,25:50:99:.:.:99,0,596:. 0/0:50,0:50:99:.:.:0,120,1800:. 0/1:18,34:52:99:.:.:183,0,372:. NW_016690238.1 2056646 . G A 516393 . AC=682;AF=0.424;AN=1610;BaseQRankSum=6.37;DP=40414;ExcessHet=0.0003;FS=0.000;InbreedingCoeff=0.1445;MLEAC=715;MLEAF=0.444;MQ=60.00;MQRankSum=0.00;QD=20.44;ReadPosRankSum=0.00;SOR=0.335 GT:AD:DP:GQ:PGT:PID:PL:PS 0/0:47,0:47:99:.:.:0,115,1388:. 1/1:0,50:50:99:.:.:1634,150,0:. 0/1:24,26:50:99:.:.:673,0,540:. 0/1:28,21:49:99:.:.:522,0,657:. 0/1:26,25:51:99:.:.:640,0,587:. 0/1:19,31:50:99:.:.:836,0,415:. 0/1:30,20:50:99:.:.:447,0,709:. 0/0:50,0:50:99:.:.:0,120,1800:. 0/0:48,0:48:99:.:.:0,120,1800:. 0/0:48,0:48:99:.:.:0,116,1154:. 0/0:50,0:50:99:.:.:0,111,1237:. 0/0:50,0:50:99:.:.:0,120,1086:. 0/1:30,20:50:99:.:.:463,0,735:. NW_016690238.1 3163820 . A C 466381 . AC=767;AF=0.473;AN=1622;BaseQRankSum=-5.941e+00;DP=37965;ExcessHet=0.0295;FS=0.000;InbreedingCoeff=0.0898;MLEAC=798;MLEAF=0.492;MQ=60.00;MQRankSum=0.00;QD=17.42;ReadPosRankSum=0.00;SOR=0.904 GT:AD:DP:GQ:PGT:PID:PL:PS 1|1:0,49:49:99:1|1:3163820_A_C:1718,147,0:3163820 1/1:0,50:50:99:.:.:1150,148,0:. 1/1:1,48:49:99:.:.:1388,134,0:. 0/0:48,0:48:99:.:.:0,111,1277:. 0/1:30,20:50:99:.:.:329,0,770:. 1/1:0,44:44:99:.:.:1531,132,0:. 0/1:23,25:48:99:.:.:405,0,561:. 1/1:0,48:48:99:.:.:1698,144,0:. 1/1:0,49:49:99:.:.:1061,145,0:. 0/0:48,0:48:99:.:.:0,119,1313:. 0/1:20,28:48:99:.:.:518,0,468:. 1|1:0,48:48:99:1|1:3163820_A_C:1759,144,0:3163820 1|1:0,54:54:99:1|1:3163814_T_C:1883,162,0:3163814 NW_016690238.1 4202182 . C T 2422.25 . AC=4;AF=2.451e-03;AN=1632;BaseQRankSum=6.24;DP=39849;ExcessHet=0.0080;FS=0.000;InbreedingCoeff=0.6046;MLEAC=4;MLEAF=2.451e-03;MQ=60.00;MQRankSum=0.00;QD=16.26;ReadPosRankSum=0.00;SOR=1.674 GT:AD:DP:GQ:PL 0/0:48,0:48:99:0,120,1800 0/0:49,0:49:99:0,120,1800 0/0:50,0:50:99:0,120,1800 0/0:48,0:48:99:0,120,1800 0/0:50,0:50:99:0,120,1800 0/0:48,0:48:99:0,120,1800 1/1:1,48:49:99:1350,120,0 0/0:50,0:50:99:0,120,1800 0/0:51,0:51:99:0,120,1800 0/0:49,0:49:99:0,120,1800 0/1:24,26:50:99:571,0,467 0/0:50,0:50:99:0,120,1800 0/0:49,0:49:99:0,120,1800 NW_016690239.1 2088100 . C T 472790 . AC=489;AF=0.301;AN=1624;BaseQRankSum=6.16;DP=40708;ExcessHet=0.0000;FS=0.000;InbreedingCoeff=0.1753;MLEAC=511;MLEAF=0.315;MQ=60.00;MQRankSum=0.00;QD=22.98;ReadPosRankSum=0.00;SOR=0.332 GT:AD:DP:GQ:PGT:PID:PL:PS 1|1:1,54:55:99:1|1:2088100_C_T:2385,121,0:2088100 0/0:50,0:50:99:.:.:0,120,1800:. 0/0:50,0:50:99:.:.:0,120,1800:. 0/0:50,0:50:99:.:.:0,120,1800:. 0/0:49,0:49:99:.:.:0,120,1800:. 0|1:49,50:99:99:0|1:2088100_C_T:1952,0,1907:2088100 0|1:49,47:96:99:0|1:2088100_C_T:1826,0,1916:2088100 0/0:52,0:52:99:.:.:0,120,1800:. 0/0:51,0:51:99:.:.:0,120,1800:. 1|1:2,51:53:70:1|1:2088100_C_T:2205,70,0:2088100 1|1:0,50:50:99:1|1:2088100_C_T:2250,151,0:2088100 0/0:50,0:50:99:.:.:0,120,1800:. 0/0:50,0:50:99:.:.:0,115,1326:. NW_016690239.1 3450261 . C T 77222.2 . AC=109;AF=0.067;AN=1616;BaseQRankSum=5.99;DP=38728;ExcessHet=-0.0000;FS=0.000;InbreedingCoeff=0.5849;MLEAC=114;MLEAF=0.071;MQ=60.00;MQRankSum=0.00;QD=21.43;ReadPosRankSum=0.00;SOR=2.035 GT:AD:DP:GQ:PGT:PID:PL:PS 1/1:0,50:50:99:.:.:1555,150,0:. 1/1:0,50:50:99:.:.:1534,150,0:. 1/1:0,48:48:99:.:.:1523,144,0:. 1/1:0,50:50:99:.:.:1535,150,0:. 0/1:23,27:50:99:.:.:706,0,510:. 1/1:0,47:47:99:.:.:1443,141,0:. 1/1:0,50:50:99:.:.:1440,150,0:. 1/1:0,51:51:99:.:.:1566,153,0:. 1/1:0,48:48:99:.:.:1425,144,0:. 1/1:0,49:49:99:.:.:1436,147,0:. 1/1:0,48:48:99:.:.:1441,144,0:. 1/1:0,49:49:99:.:.:1447,147,0:. 0/0:48,0:48:99:.:.:0,120,1800:. NW_016690239.1 4560860 . A G 14810.6 . AC=29;AF=0.018;AN=1614;BaseQRankSum=-5.392e+00;DP=36740;ExcessHet=0.0562;FS=0.000;InbreedingCoeff=0.3897;MLEAC=30;MLEAF=0.019;MQ=60.00;MQRankSum=0.00;QD=12.45;ReadPosRankSum=0.00;SOR=0.206 GT:AD:DP:GQ:PGT:PID:PL:PS 1/1:1,49:50:99:.:.:1387,118,0:. 0/0:47,0:47:99:.:.:0,117,1269:. 0/0:52,0:52:99:.:.:0,120,1800:. 0|1:37,13:50:99:0|1:4560859_C_T:428,0,1508:4560859 0/0:47,0:47:99:.:.:0,120,1800:. 0|1:20,30:50:99:0|1:4560859_C_T:1145,0,744:4560859 0/0:45,0:45:99:.:.:0,120,1800:. 0/0:48,0:48:99:.:.:0,118,1331:. 0/0:46,0:46:99:.:.:0,115,1277:. 0/0:46,0:46:99:.:.:0,110,1268:. 0/0:46,0:46:99:.:.:0,120,1800:. 0/0:47,0:47:99:.:.:0,120,1800:. 0/1:34,15:49:99:.:.:295,0,947:. NW_016690239.1 4877838 . C T 16450.6 . AC=30;AF=0.018;AN=1624;BaseQRankSum=5.90;DP=39065;ExcessHet=0.0000;FS=0.000;InbreedingCoeff=0.5350;MLEAC=31;MLEAF=0.019;MQ=60.00;MQRankSum=0.00;QD=14.38;ReadPosRankSum=0.00;SOR=1.290 GT:AD:DP:GQ:PL 0/0:48,0:48:99:0,120,1800 0/0:49,0:49:99:0,112,1476 0/0:47,0:47:99:0,120,1800 1/1:0,48:48:99:1268,144,0 0/0:48,0:48:99:0,120,1800 0/1:25,24:49:99:483,0,143 1/1:0,49:49:99:1317,146,0 0/1:28,18:46:99:340,0,473 1/1:0,51:51:99:1306,152,0 0/0:50,0:50:99:0,115,1524 1/1:0,52:52:99:1333,155,0 1/1:0,50:50:99:1338,150,0 1/1:0,53:53:99:1346,158,0 NW_016690240.1 636668 . A G 4203.37 . AC=7;AF=4.397e-03;AN=1592;BaseQRankSum=-4.488e+00;DP=36695;ExcessHet=0.0001;FS=0.000;InbreedingCoeff=0.5916;MLEAC=7;MLEAF=4.397e-03;MQ=60.00;MQRankSum=0.00;QD=17.30;ReadPosRankSum=0.00;SOR=1.947 GT:AD:DP:GQ:PL 0/0:52,0:52:99:0,120,1800 0/0:50,0:50:99:0,120,1800 0/0:48,0:48:99:0,109,848 0/0:48,0:48:99:0,120,1800 0/0:50,0:50:99:0,120,1800 0/0:49,0:49:99:0,115,1186 0/0:49,0:49:99:0,120,1800 0/0:49,0:49:99:0,120,1800 0/1:22,23:45:99:518,0,510 0/0:52,0:52:99:0,120,1800 0/1:23,27:50:99:652,0,503 1/1:0,50:50:99:1461,150,0 1/1:0,49:49:99:1351,147,0 NW_016690240.1 1108340 . A G 4803.63 . AC=8;AF=4.908e-03;AN=1630;BaseQRankSum=-6.617e+00;DP=37871;ExcessHet=0.0000;FS=0.000;InbreedingCoeff=0.6549;MLEAC=8;MLEAF=4.908e-03;MQ=60.00;MQRankSum=0.00;QD=19.85;ReadPosRankSum=0.00;SOR=2.693 GT:AD:DP:GQ:PL 0/0:54,0:54:99:0,116,1436 0/0:47,0:47:99:0,116,1416 0/0:48,0:48:99:0,120,1800 0/0:49,0:49:99:0,120,1800 0/0:52,0:52:99:0,120,1800 0/1:25,26:51:99:576,0,632 0/0:49,0:49:99:0,120,1090 1/1:0,48:48:99:1333,143,0 0/1:26,21:48:99:421,0,683 1/1:0,49:49:99:1338,146,0 1/1:0,47:47:99:1313,141,0 0/0:50,0:50:99:0,120,1800 0/0:46,0:46:99:0,105,1202 NW_016690240.1 1230993 . C T 15119.3 . AC=26;AF=0.016;AN=1624;BaseQRankSum=6.31;DP=38929;ExcessHet=0.4569;FS=6.086;InbreedingCoeff=0.3535;MLEAC=27;MLEAF=0.017;MQ=60.00;MQRankSum=0.00;QD=12.34;ReadPosRankSum=0.00;SOR=3.928 GT:AD:DP:GQ:PGT:PID:PL:PS 0/1:27,21:48:99:.:.:417,0,470:. 0|1:28,21:49:99:0|1:1230984_G_A:795,0,479:1230984 0/1:23,25:48:99:.:.:542,0,378:. 0/0:48,0:48:99:.:.:0,120,1800:. 0/0:49,0:49:99:.:.:0,120,1800:. 0/0:49,0:49:99:.:.:0,120,1800:. 0/0:48,0:48:99:.:.:0,120,1800:. 0/0:49,0:49:99:.:.:0,120,1346:. 0/0:49,0:49:99:.:.:0,118,1516:. 0/0:49,0:49:99:.:.:0,108,1207:. 0/0:49,0:49:99:.:.:0,120,1395:. 0/0:49,0:49:99:.:.:0,120,1800:. 0/1:28,19:47:99:.:.:394,0,138:. NW_016690240.1 1775758 . G C 3296.9 . AC=6;AF=3.672e-03;AN=1634;BaseQRankSum=2.10;DP=39534;ExcessHet=0.0200;FS=0.000;InbreedingCoeff=0.5644;MLEAC=6;MLEAF=3.672e-03;MQ=60.00;MQRankSum=0.00;QD=13.51;ReadPosRankSum=0.00;SOR=1.188 GT:AD:DP:GQ:PL 0/0:48,0:48:99:0,118,1366 0/0:50,0:50:99:0,120,1800 0/0:49,0:49:99:0,120,1800 0/0:49,0:49:99:0,120,1800 0/0:49,0:49:99:0,120,1800 0/0:49,0:49:99:0,120,1800 0/0:49,0:49:99:0,120,1800 0/1:27,22:49:99:440,0,601 0/1:21,29:50:99:655,0,413 0/1:26,22:48:99:446,0,577 0/1:23,26:49:99:561,0,532 0/0:50,0:50:99:0,117,1403 1/1:0,48:48:99:1328,144,0 NW_016690240.1 1908546 . C T 6506.03 . AC=6;AF=3.686e-03;AN=1628;BaseQRankSum=6.27;DP=41558;ExcessHet=3.0505;FS=0.000;InbreedingCoeff=0.5301;MLEAC=6;MLEAF=3.686e-03;MQ=60.00;MQRankSum=0.00;QD=17.73;ReadPosRankSum=-3.570e-01;SOR=0.576 GT:AD:DP:GQ:PGT:PID:PL:PS 0/0:50,0:50:99:.:.:0,120,1800:. 0/0:51,0:51:99:.:.:0,99,1530:. 0|1:38,15:53:99:0|1:1908546_C_T:515,0,1550:1908546 0/0:49,0:49:99:.:.:0,120,1378:. 0|1:47,51:98:99:0|1:1908546_C_T:2000,0,1813:1908546 0/0:52,0:52:99:.:.:0,103,1462:. 0/0:49,0:49:99:.:.:0,120,1800:. 0/0:50,0:50:99:.:.:0,120,1800:. 0/0:55,0:55:99:.:.:0,105,1372:. 0/0:49,0:49:99:.:.:0,106,1291:. 0/0:48,0:48:83:.:.:0,83,1200:. 0|1:24,29:53:99:0|1:1908546_C_T:1145,0,920:1908546 0/0:50,0:50:99:.:.:0,120,1800:. NW_016690240.1 3739658 . A G 2466.28 . AC=5;AF=3.064e-03;AN=1632;BaseQRankSum=-6.288e+00;DP=39063;ExcessHet=0.0133;FS=0.000;InbreedingCoeff=0.5671;MLEAC=5;MLEAF=3.064e-03;MQ=60.00;MQRankSum=0.00;QD=12.58;ReadPosRankSum=0.00;SOR=1.184 GT:AD:DP:GQ:PL 0/0:49,0:49:99:0,120,1800 0/0:49,0:49:99:0,120,1800 0/0:50,0:50:99:0,108,1401 0/1:30,18:48:99:356,0,744 0/0:50,0:50:99:0,120,1800 0/0:48,0:48:99:0,120,1800 0/0:50,0:50:99:0,120,1800 0/0:48,0:48:99:0,120,1800 0/0:49,0:49:99:0,120,1800 0/1:23,29:52:99:580,0,528 1/1:0,49:49:99:1240,146,0 0/0:49,0:49:99:0,120,1800 0/0:48,0:48:99:0,120,1800 NW_016690241.1 371229 . G A 1903.65 . AC=3;AF=1.850e-03;AN=1622;BaseQRankSum=6.17;DP=36256;ExcessHet=3.0183;FS=0.000;InbreedingCoeff=0.5641;MLEAC=3;MLEAF=1.850e-03;MQ=60.00;MQRankSum=0.00;QD=12.86;ReadPosRankSum=0.00;SOR=0.720 GT:AD:DP:GQ:PL 0/0:47,0:47:99:0,111,1231 0/0:48,0:48:99:0,119,1384 0/0:45,0:45:99:0,119,1532 0/0:49,0:49:99:0,120,1800 0/0:49,0:49:99:0,115,1252 0/0:48,0:48:99:0,120,1800 0/0:49,0:49:99:0,111,1384 0/0:48,0:48:99:0,120,1800 0/1:24,26:50:99:694,0,581 0/0:47,0:47:99:0,119,1040 0/0:46,0:46:99:0,115,1387 0/1:24,24:48:99:639,0,583 0/1:25,25:50:99:643,0,593 NW_016690241.1 1281553 . A C 3117.48 . AC=18;AF=0.011;AN=1630;BaseQRankSum=-6.580e+00;DP=41937;ExcessHet=0.0000;FS=0.000;InbreedingCoeff=0.5856;MLEAC=19;MLEAF=0.012;MQ=60.00;MQRankSum=0.00;QD=4.56;ReadPosRankSum=0.00;SOR=1.881 GT:AD:DP:GQ:PL 1/1:0,59:59:99:582,151,0 0/1:28,24:52:83:83,0,711 1/1:0,52:52:99:495,133,0 0/1:23,20:43:70:70,0,606 0/0:57,0:57:99:0,120,1800 0/1:28,26:54:97:97,0,661 0/0:53,0:53:99:0,116,1471 0/1:19,29:48:99:145,0,409 0/0:51,0:51:99:0,120,1800 0/1:31,23:54:68:68,0,696 0/0:52,0:52:99:0,107,1089 0/1:25,28:53:99:120,0,628 0/0:49,0:49:99:0,108,1341 NW_016690241.1 5014046 . C T 6761.74 . AC=9;AF=5.549e-03;AN=1622;BaseQRankSum=6.04;DP=38738;ExcessHet=0.0003;FS=0.000;InbreedingCoeff=0.5907;MLEAC=9;MLEAF=5.549e-03;MQ=60.00;MQRankSum=0.00;QD=20.24;ReadPosRankSum=-8.250e-01;SOR=1.567 GT:AD:DP:GQ:PGT:PID:PL:PS 0/0:48,0:48:99:.:.:0,119,1374:. 0/0:48,0:48:99:.:.:0,111,1289:. 0/0:46,0:46:99:.:.:0,110,1417:. 0/0:47,0:47:99:.:.:0,105,1164:. 0|1:23,23:46:99:0|1:5014012_C_T:897,0,897:5014012 1|1:0,48:48:99:1|1:5014027_C_CA:2160,144,0:5014027 0/0:48,0:48:99:.:.:0,120,1800:. 0/0:51,0:51:99:.:.:0,120,1800:. 0|1:23,26:49:99:0|1:5014027_C_CA:1018,0,883:5014027 0/0:52,0:52:99:.:.:0,120,1800:. 0/1:21,28:49:99:.:.:644,0,410:. 0/0:51,0:51:99:.:.:0,120,1800:. 0/0:49,0:49:99:.:.:0,120,1800:. NW_016690242.1 2526079 . C T 228834 . AC=324;AF=0.200;AN=1618;BaseQRankSum=5.60;DP=40120;ExcessHet=-0.0000;FS=2.109;InbreedingCoeff=0.3745;MLEAC=338;MLEAF=0.209;MQ=60.00;MQRankSum=0.00;QD=19.67;ReadPosRankSum=0.00;SOR=1.421 GT:AD:DP:GQ:PGT:PID:PL:PS 0/1:27,20:47:99:.:.:438,0,614:. 0/0:50,0:50:99:.:.:0,120,1800:. 0/0:50,0:50:99:.:.:0,120,1800:. 0|1:31,18:49:99:0|1:2526079_C_T:663,0,1240:2526079 1/1:0,45:45:99:.:.:1639,135,0:. 0/0:53,0:53:99:.:.:0,120,1800:. 0/0:49,0:49:99:.:.:0,120,1800:. 0|1:28,22:50:99:0|1:2526079_C_T:835,0,1102:2526079 1/1:0,49:49:99:.:.:1776,147,0:. 0|1:33,18:51:99:0|1:2526079_C_T:634,0,1331:2526079 0/0:49,0:49:99:.:.:0,120,1800:. 1/1:0,50:50:99:.:.:1905,150,0:. 1|1:0,49:49:99:1|1:2526079_C_T:2205,147,0:2526079 NW_016690242.1 2757946 . G A 5630.65 . AC=8;AF=5.155e-03;AN=1552;DP=35663;ExcessHet=0.0000;FS=0.000;InbreedingCoeff=0.5898;MLEAC=9;MLEAF=5.799e-03;MQ=60.00;QD=28.88;SOR=10.556 GT:AD:DP:GQ:PL 0/0:48,0:48:99:0,120,1800 0/0:49,0:49:99:0,117,1425 0/0:49,0:49:99:0,120,1800 0/0:49,0:49:99:0,120,1800 0/0:49,0:49:99:0,120,1800 0/0:50,0:50:99:0,120,1800 0/0:50,0:50:99:0,120,1280 1/1:0,50:50:99:1479,150,0 1/1:0,47:47:99:1434,141,0 0/0:49,0:49:99:0,120,1800 0/0:50,0:50:99:0,120,1800 1/1:0,49:49:99:1446,147,0 1/1:0,49:49:99:1450,147,0 NW_016690242.1 3602856 . T C 116347 . AC=145;AF=0.089;AN=1632;BaseQRankSum=-8.740e-01;DP=42370;ExcessHet=-0.0000;FS=2.105;InbreedingCoeff=0.4345;MLEAC=148;MLEAF=0.091;MQ=59.99;MQRankSum=0.00;QD=17.94;ReadPosRankSum=0.00;SOR=0.369 GT:AD:DP:GQ:PGT:PID:PL:PS 0/0:50,0:50:99:.:.:0,120,1800:. 0/1:50,50:100:99:.:.:1178,0,1079:. 0/1:27,24:51:99:.:.:508,0,591:. 0/0:48,0:48:99:.:.:0,120,1800:. 0/0:56,0:56:99:.:.:0,105,1373:. 0/0:52,0:52:99:.:.:0,101,1272:. 0/0:48,0:48:99:.:.:0,113,1304:. 0/0:50,0:50:99:.:.:0,99,1505:. 1/1:0,50:50:99:.:.:1305,150,0:. 1/1:0,52:52:99:.:.:1441,156,0:. 0/0:49,0:49:99:.:.:0,103,1329:. 0/1:27,28:55:99:.:.:589,0,588:. 0/1:21,28:49:99:.:.:599,0,413:. NW_016690242.1 3694186 . A C 2329.83 . AC=8;AF=4.896e-03;AN=1634;BaseQRankSum=-6.486e+00;DP=44408;ExcessHet=0.0002;FS=0.000;InbreedingCoeff=0.5564;MLEAC=8;MLEAF=4.896e-03;MQ=60.00;MQRankSum=0.00;QD=7.66;ReadPosRankSum=0.00;SOR=1.459 GT:AD:DP:GQ:PGT:PID:PL:PS 0/0:57,0:57:99:.:.:0,119,1577:. 1/1:0,50:50:99:.:.:476,127,0:. 0/1:30,22:52:63:.:.:63,0,799:. 0/0:59,0:59:99:.:.:0,120,1800:. 0/0:52,0:52:99:.:.:0,120,1800:. 0|1:27,21:48:99:0|1:3694183_G_T:678,0,1071:3694183 0/0:54,0:54:99:.:.:0,120,1800:. 0/0:52,0:52:99:.:.:0,120,1800:. 0|1:22,25:48:99:0|1:3694179_C_G:698,0,845:3694179 0/0:60,0:60:99:.:.:0,118,1800:. 0/0:52,0:52:99:.:.:0,120,1800:. 0/1:29,27:56:99:.:.:101,0,786:. 0/0:52,0:52:99:.:.:0,120,1800:. NW_016690242.1 3780219 . C A 8949.16 . AC=12;AF=7.362e-03;AN=1630;BaseQRankSum=3.18;DP=38599;ExcessHet=0.0000;FS=0.000;InbreedingCoeff=0.6906;MLEAC=12;MLEAF=7.362e-03;MQ=60.00;MQRankSum=0.00;QD=22.43;ReadPosRankSum=0.00;SOR=1.614 GT:AD:DP:GQ:PL 1/1:1,51:52:99:1521,146,0 0/1:26,25:51:99:602,0,106 0/0:50,0:50:99:0,101,1168 0/0:49,0:49:99:0,120,1800 0/0:48,0:48:99:0,118,1281 0/0:49,0:49:99:0,119,1525 0/0:47,0:47:99:0,120,1421 0/0:48,0:48:99:0,120,1800 0/0:49,0:49:99:0,120,1800 0/0:50,0:50:99:0,109,1275 0/0:48,0:48:99:0,115,1411 0/0:49,0:49:99:0,120,1329 0/0:49,0:49:99:0,99,1272 NW_016690242.1 4657536 . C T 12961.9 . AC=17;AF=0.010;AN=1626;BaseQRankSum=5.68;DP=36086;ExcessHet=0.0000;FS=5.332;InbreedingCoeff=0.6050;MLEAC=18;MLEAF=0.011;MQ=60.00;MQRankSum=0.00;QD=24.23;ReadPosRankSum=0.00;SOR=3.988 GT:AD:DP:GQ:PGT:PID:PL:PS 0/0:48,0:48:99:.:.:0,118,1499:. 0/0:47,0:47:99:.:.:0,120,1800:. 0|1:25,19:44:99:0|1:4657536_C_T:723,0,993:4657536 0/0:41,0:41:99:.:.:0,120,1800:. 0/0:44,0:44:99:.:.:0,110,1151:. 0/0:48,0:48:99:.:.:0,120,1800:. 0/0:46,0:46:99:.:.:0,109,1257:. 0|1:24,20:44:99:0|1:4657536_C_T:726,0,911:4657536 0/0:49,0:49:99:.:.:0,110,783:. 0|1:22,27:49:99:0|1:4657536_C_T:1068,0,784:4657536 1|1:0,51:51:99:1|1:4657536_C_T:2230,153,0:4657536 1|1:0,47:47:99:1|1:4657536_C_T:2086,141,0:4657536 0|1:28,22:50:99:0|1:4657536_C_T:840,0,1090:4657536 NW_016690242.1 5134922 . G A 4527.69 . AC=6;AF=3.717e-03;AN=1614;BaseQRankSum=6.84;DP=42339;ExcessHet=0.0202;FS=0.000;InbreedingCoeff=0.5680;MLEAC=6;MLEAF=3.717e-03;MQ=60.00;MQRankSum=0.00;QD=13.93;ReadPosRankSum=0.00;SOR=0.858 GT:AD:DP:GQ:PL 0/0:61,0:61:99:0,114,1794 0/0:51,0:51:99:0,120,1800 0/0:51,0:51:99:0,120,1800 0/0:59,0:59:99:0,120,1800 0/0:58,0:58:99:0,120,1800 0/0:52,0:52:99:0,112,1551 0/0:50,0:50:99:0,120,1800 0/0:51,0:51:99:0,120,1800 0/0:50,0:50:99:0,115,1269 0/0:57,0:57:99:0,105,1758 0/0:47,0:47:99:0,101,1230 0/1:34,23:57:99:522,0,824 1/1:0,51:51:99:1454,153,0 NW_016690243.1 980325 . G A 38976.5 . AC=47;AF=0.029;AN=1628;BaseQRankSum=6.48;DP=38752;ExcessHet=-0.0000;FS=0.000;InbreedingCoeff=0.5977;MLEAC=47;MLEAF=0.029;MQ=60.00;MQRankSum=0.00;QD=26.73;ReadPosRankSum=0.00;SOR=1.767 GT:AD:DP:GQ:PGT:PID:PL:PS 0|1:23,25:48:85:0|1:980324_T_C:732,0,85:980324 1|1:0,51:51:99:1|1:980324_T_C:2295,154,0:980324 1|1:1,46:47:96:1|1:980324_T_C:2025,96,0:980324 0/1:28,22:50:99:.:.:516,0,129:. 1|1:0,51:51:99:1|1:980324_T_C:2270,154,0:980324 0|1:26,23:49:99:0|1:980324_T_C:871,0,869:980324 0/0:47,0:47:99:.:.:0,120,1369:. 0|1:33,17:50:99:0|1:980324_T_C:353,0,179:980324 0|1:28,20:48:99:0|1:980324_T_C:425,0,135:980324 0|1:27,20:47:99:0|1:980324_T_C:759,0,892:980324 1|1:0,46:46:99:1|1:980324_T_C:2070,138,0:980324 0|1:26,25:51:99:0|1:980324_T_C:572,0,106:980324 1|1:0,49:49:99:1|1:980324_T_C:2205,147,0:980324 NW_016690243.1 2239439 . G A 10434.5 . AC=11;AF=6.799e-03;AN=1618;BaseQRankSum=5.63;DP=38451;ExcessHet=0.0000;FS=0.000;InbreedingCoeff=0.6061;MLEAC=12;MLEAF=7.417e-03;MQ=60.00;MQRankSum=0.00;QD=30.07;ReadPosRankSum=0.00;SOR=2.728 GT:AD:DP:GQ:PGT:PID:PL:PS 1|1:0,50:50:99:1|1:2239439_G_A:2250,151,0:2239439 0/0:50,0:50:99:.:.:0,120,1800:. 0/0:50,0:50:99:.:.:0,118,1176:. 0/0:49,0:49:99:.:.:0,120,1800:. 0/0:50,0:50:99:.:.:0,120,1800:. 0/0:49,0:49:99:.:.:0,120,1800:. 0/0:49,0:49:99:.:.:0,120,1800:. 1|1:1,49:50:99:1|1:2239439_G_A:2160,106,0:2239439 1|1:0,50:50:99:1|1:2239439_G_A:2243,151,0:2239439 0/0:48,0:48:99:.:.:0,120,1800:. 1|1:0,50:50:99:1|1:2239439_G_A:2236,151,0:2239439 0/1:22,28:50:99:.:.:633,0,459:. 0/0:50,0:50:99:.:.:0,120,1800:. NW_016690243.1 2729627 . C T 4696.91 . AC=8;AF=4.908e-03;AN=1630;BaseQRankSum=6.18;DP=41018;ExcessHet=0.0375;FS=0.000;InbreedingCoeff=0.5262;MLEAC=8;MLEAF=4.908e-03;MQ=60.00;MQRankSum=0.00;QD=13.46;ReadPosRankSum=1.02;SOR=0.941 GT:AD:DP:GQ:PL 0/0:49,0:49:99:0,119,1246 0/0:51,0:51:99:0,112,1111 0/0:51,0:51:99:0,120,1800 0/1:24,27:51:99:680,0,461 0/0:53,0:53:99:0,120,1800 0/0:51,0:51:99:0,110,1309 0/1:25,25:50:99:570,0,483 0/0:50,0:50:99:0,118,1449 0/0:46,0:46:99:0,104,1293 0/0:49,0:49:99:0,109,1261 0/1:25,24:49:99:564,0,504 0/1:25,24:49:99:568,0,558 0/1:27,22:49:99:507,0,551 NW_016690243.1 3589610 . G C 56383.6 . AC=81;AF=0.050;AN=1610;BaseQRankSum=6.67;DP=39232;ExcessHet=-0.0000;FS=4.371;InbreedingCoeff=0.7181;MLEAC=84;MLEAF=0.052;MQ=60.00;MQRankSum=0.00;QD=23.10;ReadPosRankSum=0.00;SOR=0.006 GT:AD:DP:GQ:PGT:PID:PL:PS 0/1:33,17:50:99:.:.:322,0,697:. 1/1:0,49:49:99:.:.:1289,147,0:. 1/1:0,48:48:99:.:.:1308,144,0:. 0/1:20,29:49:99:.:.:628,0,348:. 1/1:0,49:49:99:.:.:1307,147,0:. 0/1:26,23:49:99:.:.:507,0,809:. 1/1:0,48:48:99:.:.:1330,144,0:. 1/1:0,50:50:99:.:.:1479,150,0:. 1|1:0,49:49:99:1|1:3589608_T_C:2205,147,0:3589608 0/1:24,26:50:99:.:.:629,0,516:. 1/1:0,51:51:99:.:.:1425,153,0:. 1/1:0,50:50:99:.:.:1475,150,0:. 1/1:0,50:50:99:.:.:1487,150,0:. NW_016690243.1 3935524 . G A 4932.7 . AC=10;AF=6.158e-03;AN=1624;BaseQRankSum=5.09;DP=38414;ExcessHet=0.0005;FS=26.051;InbreedingCoeff=0.5745;MLEAC=9;MLEAF=5.542e-03;MQ=60.00;MQRankSum=0.00;QD=14.38;ReadPosRankSum=0.00;SOR=3.034 GT:AD:DP:GQ:PGT:PID:PL:PS 0/0:49,0:49:99:.:.:0,120,1800:. 0/0:49,0:49:99:.:.:0,120,1800:. 0/0:48,0:48:99:.:.:0,120,1380:. 0/0:48,0:48:99:.:.:0,120,1800:. 0/1:30,21:51:99:.:.:506,0,745:. 0/0:47,0:47:99:.:.:0,119,1172:. 0/0:45,0:45:99:.:.:0,114,1386:. 0/1:23,27:50:99:.:.:629,0,489:. 0/0:49,0:49:99:.:.:0,120,1281:. 0/1:24,26:50:99:.:.:595,0,508:. 0/0:49,0:49:99:.:.:0,117,1407:. 0/0:48,0:48:99:.:.:0,120,1800:. 0/0:49,0:49:99:.:.:0,120,1800:. NW_016690244.1 964651 . C T 29712.4 . AC=25;AF=0.015;AN=1622;BaseQRankSum=8.06;DP=40360;ExcessHet=0.0000;FS=0.000;InbreedingCoeff=0.4801;MLEAC=26;MLEAF=0.016;MQ=60.00;MQRankSum=0.00;QD=14.12;ReadPosRankSum=0.031;SOR=0.746 GT:AD:DP:GQ:PGT:PID:PL:PS 1/1:1,99:100:99:.:.:2672,276,0:. 1/1:1,89:90:99:.:.:2393,244,0:. 1/1:0,101:101:99:.:.:2724,302,0:. 0/1:53,45:98:99:.:.:973,0,554:. 0/1:83,14:97:98:.:.:98,0,1190:. 0/1:47,51:98:99:.:.:1150,0,533:. 0/1:57,43:100:99:.:.:882,0,665:. 0/1:53,43:96:99:.:.:851,0,603:. 0|1:48,54:102:99:0|1:964643_C_T:2094,0,1557:964643 0/0:48,0:48:99:.:.:0,119,1236:. 0/0:47,0:47:99:.:.:0,120,1436:. 0/0:48,0:48:99:.:.:0,102,1041:. 0/1:37,59:96:99:.:.:1350,0,407:. NW_016690244.1 2652754 . G T 9671.98 . AC=11;AF=6.799e-03;AN=1618;BaseQRankSum=5.25;DP=39592;ExcessHet=0.0745;FS=0.000;InbreedingCoeff=0.5110;MLEAC=11;MLEAF=6.799e-03;MQ=60.00;MQRankSum=0.00;QD=19.62;ReadPosRankSum=0.00;SOR=1.071 GT:AD:DP:GQ:PGT:PID:PL:PS 0/1:27,22:49:99:.:.:477,0,592:. 0/0:49,0:49:99:.:.:0,120,1058:. 0/0:50,0:50:99:.:.:0,120,1800:. 0/0:47,0:47:99:.:.:0,120,1800:. 0/0:49,0:49:99:.:.:0,120,1800:. 0/0:50,0:50:99:.:.:0,120,1800:. 0/0:46,0:46:99:.:.:0,120,1800:. 0/0:48,0:48:99:.:.:0,119,1287:. 1|1:0,50:50:99:1|1:2652749_T_G:2224,150,0:2652749 0/0:49,0:49:99:.:.:0,120,1800:. 0/1:18,31:50:99:.:.:800,0,379:. 0/0:49,0:49:99:.:.:0,120,1800:. 0/1:21,27:48:99:.:.:699,0,453:. NW_016690244.1 3451614 . C A 276663 . AC=370;AF=0.244;AN=1516;BaseQRankSum=-1.005e+00;DP=39547;ExcessHet=0.0000;FS=1.975;InbreedingCoeff=0.2447;MLEAC=419;MLEAF=0.276;MQ=60.00;MQRankSum=0.00;QD=18.71;ReadPosRankSum=0.00;SOR=1.067 GT:AD:DP:GQ:PGT:PID:PL:PS 0/1:28,23:51:99:.:.:482,0,639:. 0/1:30,20:50:99:.:.:416,0,700:. 0/0:50,0:50:99:.:.:0,120,1800:. 0/1:26,23:49:99:.:.:491,0,590:. 1/1:0,49:49:99:.:.:1443,146,0:. 1/1:0,48:48:99:.:.:1336,144,0:. 1/1:0,49:49:99:.:.:1352,147,0:. 1/1:0,50:50:99:.:.:1316,150,0:. 1/1:0,50:50:99:.:.:1364,150,0:. 1/1:0,49:49:99:.:.:1300,146,0:. 1/1:0,50:50:99:.:.:1342,149,0:. 0/0:51,0:51:99:.:.:0,120,1800:. 0/1:21,29:50:99:.:.:661,0,430:. NW_016690244.1 5005506 . C T 23772.8 . AC=39;AF=0.024;AN=1632;BaseQRankSum=6.23;DP=38659;ExcessHet=0.0000;FS=0.000;InbreedingCoeff=0.4074;MLEAC=41;MLEAF=0.025;MQ=60.00;MQRankSum=0.00;QD=14.98;ReadPosRankSum=0.00;SOR=1.030 GT:AD:DP:GQ:PGT:PID:PL:PS 0/1:21,29:50:99:.:.:607,0,668:. 0/0:50,0:50:99:.:.:0,108,870:. 0/1:30,19:49:99:.:.:342,0,595:. 0/0:48,0:48:99:.:.:0,110,1448:. 0/1:21,28:49:99:.:.:628,0,372:. 0/1:28,19:47:99:.:.:368,0,580:. 0/1:23,27:50:99:.:.:578,0,423:. 0/1:24,24:48:99:.:.:482,0,435:. 0/1:27,22:49:99:.:.:462,0,542:. 0/0:48,0:48:99:.:.:0,112,1144:. 0/0:49,0:49:99:.:.:0,118,1253:. 0/1:25,24:50:99:.:.:515,0,477:. 0/0:49,0:49:99:.:.:0,118,1368:. NW_016690245.1 17792 . C T 52940.9 . AC=97;AF=0.060;AN=1620;BaseQRankSum=5.80;DP=38021;ExcessHet=-0.0000;FS=0.000;InbreedingCoeff=0.4648;MLEAC=101;MLEAF=0.062;MQ=60.00;MQRankSum=0.00;QD=15.47;ReadPosRankSum=0.00;SOR=1.162 GT:AD:DP:GQ:PGT:PID:PL:PS 0/0:46,0:46:99:.:.:0,120,1800:. 0/0:46,0:46:99:.:.:0,111,1342:. 0/1:25,22:47:99:.:.:422,0,109:. 0/1:28,21:49:99:.:.:421,0,146:. 0/0:48,0:48:99:.:.:0,120,1800:. 0/1:29,20:49:99:.:.:364,0,208:. 1/1:0,49:49:99:.:.:1215,145,0:. 0/0:48,0:48:99:.:.:0,120,1800:. 1/1:0,47:47:99:.:.:1191,140,0:. 0/0:50,0:50:99:.:.:0,120,1800:. 0/0:49,0:49:99:.:.:0,120,1800:. 0/1:27,22:49:99:.:.:445,0,441:. 0/1:21,30:51:99:.:.:577,0,313:. NW_016690245.1 946211 . G T 31905.2 . AC=30;AF=0.018;AN=1628;BaseQRankSum=6.64;DP=39797;ExcessHet=-0.0000;FS=0.000;InbreedingCoeff=0.7394;MLEAC=31;MLEAF=0.019;MQ=60.00;MQRankSum=0.00;QD=32.26;ReadPosRankSum=0.00;SOR=2.528 GT:AD:DP:GQ:PGT:PID:PL:PS 1|1:3,49:52:22:1|1:946211_G_T:2070,22,0:946211 0/0:49,0:49:99:.:.:0,120,1800:. 0|1:24,28:52:99:0|1:946211_G_T:1104,0,685:946211 0|1:27,24:51:99:0|1:946211_G_T:923,0,769:946211 0|1:26,23:49:99:0|1:946211_G_T:878,0,741:946211 1|1:0,50:50:99:1|1:946211_G_T:2250,151,0:946211 1|1:1,47:48:99:1|1:946211_G_T:2096,125,0:946211 1|1:0,51:51:99:1|1:946211_G_T:2287,154,0:946211 1|1:0,48:48:99:1|1:946211_G_T:2146,144,0:946211 1|1:0,51:51:99:1|1:946211_G_T:2295,154,0:946211 0/0:49,0:49:99:.:.:0,120,1800:. 1|1:0,52:52:99:1|1:946211_G_T:2333,157,0:946211 1|1:0,51:51:99:1|1:946211_G_T:2295,154,0:946211 NW_016690245.1 2147483 . A G 46096.7 . AC=77;AF=0.048;AN=1610;BaseQRankSum=-6.083e+00;DP=38176;ExcessHet=0.0000;FS=0.000;InbreedingCoeff=0.4962;MLEAC=81;MLEAF=0.050;MQ=60.00;MQRankSum=0.00;QD=16.63;ReadPosRankSum=0.00;SOR=1.422 GT:AD:DP:GQ:PGT:PID:PL:PS 0/0:48,0:48:99:.:.:0,114,1389:. 0/0:50,0:50:99:.:.:0,119,1435:. 0/0:48,0:48:99:.:.:0,115,1298:. 0/0:50,0:50:99:.:.:0,120,1800:. 0/0:47,0:47:99:.:.:0,116,1496:. 0/0:50,0:50:99:.:.:0,120,1800:. 0/0:49,0:49:99:.:.:0,119,1409:. 0/0:48,0:48:99:.:.:0,119,1426:. 0/0:50,0:50:99:.:.:0,119,1504:. 0/1:30,17:47:99:.:.:310,0,742:. 0/0:49,0:49:99:.:.:0,120,1267:. 0/1:24,23:47:99:.:.:377,0,462:. 0/1:25,21:46:99:.:.:385,0,577:. NW_016690245.1 2793684 . C T 239780 . AC=253;AF=0.156;AN=1624;BaseQRankSum=7.94;DP=47068;ExcessHet=0.0364;FS=0.000;InbreedingCoeff=0.1293;MLEAC=263;MLEAF=0.162;MQ=60.00;MQRankSum=0.00;QD=13.96;ReadPosRankSum=-9.330e+00;SOR=0.737 GT:AD:DP:GQ:PL 0/1:49,46:95:99:1211,0,203 0/0:55,0:55:87:0,87,889 1/1:0,41:41:99:1331,123,0 0/1:46,46:92:99:1016,0,183 0/0:51,0:51:99:0,99,1199 0/1:47,48:95:99:1015,0,184 0/1:22,24:46:82:574,0,82 0/1:27,21:48:99:490,0,126 1/1:0,44:44:99:1379,132,0 0/0:53,0:53:99:0,102,1029 0/0:48,0:48:99:0,114,1244 0/0:49,0:49:99:0,118,1358 0/1:20,26:46:83:681,0,83 NW_016690245.1 4014289 . T C 2105.31 . AC=4;AF=2.457e-03;AN=1628;DP=36359;ExcessHet=0.0000;FS=0.000;InbreedingCoeff=0.6690;MLEAC=4;MLEAF=2.457e-03;MQ=60.00;QD=22.16;SOR=9.129 GT:AD:DP:GQ:PL 0/0:49,0:49:99:0,116,1433 0/0:47,0:47:99:0,109,1238 0/0:47,0:47:99:0,120,1800 0/0:48,0:48:99:0,120,1800 0/0:49,0:49:99:0,120,1800 0/0:47,0:47:99:0,116,1302 0/0:48,0:48:99:0,120,1800 0/0:49,0:49:99:0,120,1800 1/1:0,46:46:99:1044,137,0 0/0:50,0:50:99:0,119,1241 0/0:48,0:48:99:0,120,1800 1/1:0,49:49:99:1165,147,0 0/0:49,0:49:99:0,120,1800 NW_016690245.1 4430177 . A T 21663.2 . AC=28;AF=0.017;AN=1632;BaseQRankSum=6.19;DP=39108;ExcessHet=0.5319;FS=0.000;InbreedingCoeff=0.3310;MLEAC=29;MLEAF=0.018;MQ=59.98;MQRankSum=0.00;QD=16.68;ReadPosRankSum=0.00;SOR=0.547 GT:AD:DP:GQ:PGT:PID:PL:PS 0/0:46,0:46:99:.:.:0,120,1800:. 0/0:46,0:46:99:.:.:0,120,1800:. 0/0:46,0:46:99:.:.:0,105,1267:. 0/0:44,0:44:99:.:.:0,120,1800:. 0/0:49,0:49:99:.:.:0,120,1800:. 0/0:48,0:48:99:.:.:0,114,1333:. 0/1:26,21:47:99:.:.:542,0,652:. 0/1:28,18:46:99:.:.:469,0,751:. 0/0:43,0:43:99:.:.:0,117,1309:. 0/1:25,23:48:99:.:.:583,0,619:. 0/1:27,19:46:99:.:.:465,0,689:. 0/0:51,0:51:99:.:.:0,120,1800:. 0/0:49,0:49:99:.:.:0,120,1800:. NW_016690245.1 4548950 . G A 35704.4 . 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AC=26;AF=0.016;AN=1616;BaseQRankSum=6.87;DP=39022;ExcessHet=0.0000;FS=0.000;InbreedingCoeff=0.6173;MLEAC=27;MLEAF=0.017;MQ=60.00;MQRankSum=0.00;QD=18.13;ReadPosRankSum=0.428;SOR=2.297 GT:AD:DP:GQ:PL 1/1:1,52:53:99:1322,135,0 1/1:0,52:52:99:1427,156,0 0/0:47,0:47:99:0,120,1800 0/1:28,26:54:99:562,0,1076 1/1:0,51:51:99:1365,153,0 1/1:0,53:53:99:1359,159,0 1/1:0,50:50:99:1287,150,0 0/1:27,23:50:99:450,0,518 0/1:27,22:50:99:419,0,494 1/1:0,56:56:99:1554,168,0 1/1:0,52:52:99:1394,156,0 1/1:0,53:53:99:1418,159,0 1/1:0,50:50:99:1337,150,0 NW_016690246.1 117128 . A G 28813.8 . 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AC=6;AF=3.663e-03;AN=1638;BaseQRankSum=4.38;DP=41030;ExcessHet=0.0000;FS=0.000;InbreedingCoeff=0.6315;MLEAC=6;MLEAF=3.663e-03;MQ=60.00;MQRankSum=0.00;QD=17.64;ReadPosRankSum=0.00;SOR=1.871 GT:AD:DP:GQ:PL 0/0:49,0:49:99:0,102,1114 0/0:99,0:99:99:0,120,1800 0/0:51,0:51:99:0,99,1429 0/0:102,0:102:99:0,120,1800 0/0:101,0:101:99:0,120,1800 1/1:0,49:49:99:1431,147,0 0/0:50,0:50:99:0,120,1800 0/0:99,0:99:99:0,120,1800 0/1:30,18:48:99:349,0,668 0/1:30,23:53:99:475,0,595 0/0:102,0:102:99:0,120,1800 0/0:103,0:103:99:0,120,1800 1/1:0,52:52:99:1447,155,0 NW_016690246.1 4298932 . G A 13126.9 . AC=11;AF=6.782e-03;AN=1622;BaseQRankSum=6.55;DP=40040;ExcessHet=0.0743;FS=4.967;InbreedingCoeff=0.5036;MLEAC=11;MLEAF=6.782e-03;MQ=60.00;MQRankSum=0.00;QD=12.48;ReadPosRankSum=-1.740e-01;SOR=0.425 GT:AD:DP:GQ:PL 0/0:48,0:48:99:0,120,1800 0/0:50,0:50:99:0,120,1800 0/0:50,0:50:99:0,120,1800 0/0:49,0:49:99:0,120,1800 0/0:50,0:50:99:0,120,1800 0/0:51,0:51:99:0,120,1800 0/0:48,0:48:99:0,120,1800 0/0:51,0:51:99:0,107,1169 0/0:54,0:54:99:0,120,1800 0/1:48,55:103:99:1209,0,526 0/0:48,0:48:99:0,116,1298 1/1:29,72:101:14:1759,14,0 0/1:41,57:98:99:1304,0,703 NW_016690246.1 4395711 . G A 906286 . 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AC=11;AF=6.765e-03;AN=1626;BaseQRankSum=-4.694e+00;DP=38595;ExcessHet=0.0000;FS=0.000;InbreedingCoeff=0.6107;MLEAC=11;MLEAF=6.765e-03;MQ=60.00;MQRankSum=0.00;QD=13.82;ReadPosRankSum=0.00;SOR=1.538 GT:AD:DP:GQ:PL 0/1:25,19:44:99:336,0,929 0/1:24,26:50:99:459,0,463 0/1:24,23:47:99:449,0,922 0/0:48,0:48:99:0,107,1350 0/0:48,0:48:99:0,102,1211 0/0:47,0:47:99:0,120,1800 1/1:0,44:44:99:1127,132,0 0/0:46,0:46:99:0,105,1235 0/1:23,20:43:99:405,0,507 0/0:49,0:49:99:0,110,1273 0/1:25,16:41:99:257,0,549 0/0:49,0:49:99:0,120,1800 0/0:49,0:49:99:0,120,1800 NW_016690247.1 22076 . C T 8416.45 . AC=14;AF=8.578e-03;AN=1632;BaseQRankSum=6.71;DP=39923;ExcessHet=3.2545;FS=0.000;InbreedingCoeff=0.4054;MLEAC=15;MLEAF=9.191e-03;MQ=59.96;MQRankSum=0.00;QD=12.09;ReadPosRankSum=0.00;SOR=0.564 GT:AD:DP:GQ:PGT:PID:PL:PS 0/0:56,0:56:16:.:.:0,16,659:. 0/0:49,0:49:99:.:.:0,120,1800:. 0/1:29,22:51:99:.:.:513,0,136:. 0/1:29,20:49:99:.:.:439,0,142:. 0/0:51,0:51:99:.:.:0,120,1800:. 0/1:20,30:50:49:.:.:693,0,49:. 0/1:28,21:49:99:.:.:451,0,132:. 0/0:49,0:49:99:.:.:0,113,1297:. 0/0:52,0:52:94:.:.:0,94,759:. 0/0:50,0:50:99:.:.:0,110,1353:. 0/0:50,0:50:99:.:.:0,111,1202:. 0/0:51,0:51:99:.:.:0,120,1800:. 0/0:51,0:51:99:.:.:0,114,1287:. NW_016690247.1 291366 . C T 333677 . AC=509;AF=0.319;AN=1598;BaseQRankSum=5.10;DP=38419;ExcessHet=-0.0000;FS=0.000;InbreedingCoeff=0.3291;MLEAC=538;MLEAF=0.337;MQ=59.99;MQRankSum=0.00;QD=18.76;ReadPosRankSum=0.00;SOR=0.733 GT:AD:DP:GQ:PGT:PID:PL:PS 1/1:0,48:48:99:.:.:1396,144,0:. 0/0:49,0:49:99:.:.:0,120,1800:. 0/1:17,28:45:99:.:.:665,0,301:. 0/1:23,25:48:99:.:.:579,0,516:. 0/1:24,25:49:99:.:.:591,0,490:. 0/1:29,20:49:99:.:.:400,0,593:. 0/1:27,23:50:99:.:.:506,0,590:. 0/1:24,25:49:99:.:.:546,0,470:. 0/0:48,0:48:99:.:.:0,120,1800:. 0/1:25,27:52:99:.:.:583,0,511:. 1/1:0,46:46:99:.:.:1223,137,0:. 0/0:50,0:50:99:.:.:0,120,1800:. 0/0:50,0:50:99:.:.:0,106,1290:. NW_016690247.1 974881 . C T 19414.7 . AC=29;AF=0.018;AN=1632;BaseQRankSum=6.70;DP=38185;ExcessHet=0.0000;FS=0.000;InbreedingCoeff=0.5800;MLEAC=30;MLEAF=0.018;MQ=60.00;MQRankSum=0.00;QD=20.74;ReadPosRankSum=0.00;SOR=2.185 GT:AD:DP:GQ:PGT:PID:PL:PS 1/1:2,48:50:89:.:.:1498,89,0:. 1/1:0,50:50:99:.:.:1509,150,0:. 0/1:26,21:47:99:.:.:540,0,652:. 0/1:21,29:50:99:.:.:713,0,432:. 0/1:26,24:50:99:.:.:588,0,594:. 0/1:26,23:49:99:.:.:558,0,615:. 0/1:23,26:49:99:.:.:560,0,430:. 1/1:0,50:50:99:.:.:1446,149,0:. 0/0:48,0:48:99:.:.:0,114,1207:. 0/1:20,29:49:99:.:.:715,0,385:. 1/1:0,50:50:99:.:.:1466,150,0:. 1/1:0,49:49:99:.:.:1455,147,0:. 1/1:0,50:50:99:.:.:1486,150,0:. NW_016690247.1 1135047 . G A 20073 . AC=37;AF=0.023;AN=1628;BaseQRankSum=6.40;DP=37664;ExcessHet=0.0000;FS=0.000;InbreedingCoeff=0.6656;MLEAC=38;MLEAF=0.023;MQ=60.00;MQRankSum=0.00;QD=18.26;ReadPosRankSum=0.00;SOR=2.177 GT:AD:DP:GQ:PGT:PID:PL:PS 1/1:0,45:45:99:.:.:1227,135,0:. 0/1:24,20:44:99:.:.:395,0,108:. 1/1:0,49:49:99:.:.:1341,147,0:. 1/1:0,47:47:99:.:.:1291,141,0:. 0/1:25,23:48:99:.:.:503,0,105:. 1/1:0,44:44:99:.:.:1219,132,0:. 1/1:0,48:48:99:.:.:1219,143,0:. 0/1:21,27:48:66:.:.:578,0,66:. 1/1:0,46:46:99:.:.:1246,137,0:. 1/1:0,47:47:99:.:.:1253,141,0:. 1/1:0,50:50:99:.:.:1280,149,0:. 1/1:1,50:51:99:.:.:1333,142,0:. 1/1:0,50:50:99:.:.:1311,148,0:. NW_016690247.1 1420765 . G A 40858.4 . AC=42;AF=0.026;AN=1630;BaseQRankSum=6.02;DP=40645;ExcessHet=0.0000;FS=1.413;InbreedingCoeff=0.4264;MLEAC=44;MLEAF=0.027;MQ=59.96;MQRankSum=0.00;QD=22.07;ReadPosRankSum=0.00;SOR=1.078 GT:AD:DP:GQ:PGT:PID:PL:PS 0/0:51,0:51:99:.:.:0,120,1800:. 0/1:26,19:45:99:.:.:468,0,584:. 1|1:0,50:50:99:1|1:1420765_G_A:2250,151,0:1420765 0|1:28,21:49:99:0|1:1420765_G_A:792,0,1099:1420765 0/0:52,0:52:99:.:.:0,120,1800:. 0/0:52,0:52:99:.:.:0,120,1800:. 0|1:26,23:49:99:0|1:1420765_G_A:881,0,1023:1420765 0/0:50,0:50:99:.:.:0,120,1800:. 0/0:51,0:51:99:.:.:0,120,1800:. 0/0:55,0:55:99:.:.:0,120,1800:. 0/0:53,0:53:99:.:.:0,120,1800:. 0/0:49,0:49:99:.:.:0,120,1800:. 0/0:50,0:50:99:.:.:0,120,1800:. NW_016690247.1 1501019 . G A 779004 . 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AC=95;AF=0.058;AN=1636;BaseQRankSum=4.95;DP=38657;ExcessHet=0.0000;FS=0.000;InbreedingCoeff=0.5603;MLEAC=98;MLEAF=0.060;MQ=60.00;MQRankSum=0.00;QD=19.38;ReadPosRankSum=0.00;SOR=1.452 GT:AD:DP:GQ:PGT:PID:PL:PS 1/1:0,50:50:99:.:.:1468,150,0:. 1/1:0,50:50:99:.:.:1455,150,0:. 1/1:0,51:51:99:.:.:1410,151,0:. 0/1:26,24:50:99:.:.:538,0,535:. 1/1:0,49:49:99:.:.:1467,147,0:. 0/1:21,28:49:99:.:.:685,0,444:. 1/1:1,48:49:99:.:.:1223,119,0:. 0/1:22,27:49:99:.:.:644,0,432:. 1/1:0,49:49:99:.:.:1440,147,0:. 1/1:1,48:49:99:.:.:1365,121,0:. 0/1:26,24:50:99:.:.:554,0,568:. 1/1:1,49:50:99:.:.:1388,139,0:. 1/1:0,50:50:99:.:.:1453,149,0:. NW_016690247.1 3790715 . T C 4673.69 . 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AC=6;AF=3.676e-03;AN=1632;BaseQRankSum=-3.486e+00;DP=41188;ExcessHet=3.0504;FS=0.000;InbreedingCoeff=0.5124;MLEAC=6;MLEAF=3.676e-03;MQ=60.00;MQRankSum=0.00;QD=11.35;ReadPosRankSum=0.00;SOR=0.249 GT:AD:DP:GQ:PL 0/0:52,0:52:99:0,120,1800 0/1:28,20:48:99:406,0,697 0/0:49,0:49:99:0,120,1800 0/0:49,0:49:99:0,120,1800 0/1:20,26:46:99:621,0,459 0/0:51,0:51:99:0,117,1369 0/1:22,28:50:99:654,0,520 0/0:50,0:50:99:0,120,1800 0/1:21,30:51:99:725,0,510 0/0:51,0:51:99:0,120,1800 0/0:52,0:52:99:0,120,1800 0/0:53,0:53:99:0,115,1482 0/0:50,0:50:99:0,120,1800 NW_016690249.1 4763552 . A C 6303.5 . AC=12;AF=7.371e-03;AN=1628;BaseQRankSum=-5.903e+00;DP=39738;ExcessHet=0.0012;FS=0.000;InbreedingCoeff=0.5343;MLEAC=12;MLEAF=7.371e-03;MQ=60.00;MQRankSum=0.00;QD=13.00;ReadPosRankSum=0.00;SOR=1.051 GT:AD:DP:GQ:PL 0/0:49,0:49:99:0,120,1800 0/0:48,0:48:99:0,120,1800 0/1:30,19:49:99:398,0,687 1/1:0,48:48:99:1380,144,0 0/1:23,22:45:99:457,0,525 1/1:1,49:50:99:1283,122,0 0/0:49,0:49:99:0,120,1800 0/1:25,25:50:99:526,0,975 0/0:50,0:50:99:0,120,1800 0/0:50,0:50:99:0,120,1800 0/1:26,23:49:99:492,0,598 0/0:50,0:50:99:0,120,1800 0/0:50,0:50:99:0,120,1800 NW_016690287.1 36896 . A G 434485 . AC=568;AF=0.348;AN=1630;BaseQRankSum=-5.236e+00;DP=42670;ExcessHet=0.0000;FS=1.814;InbreedingCoeff=0.1861;MLEAC=590;MLEAF=0.362;MQ=60.00;MQRankSum=0.00;QD=18.35;ReadPosRankSum=0.00;SOR=0.160 GT:AD:DP:GQ:PGT:PID:PL:PS 0/0:53,0:53:99:.:.:0,103,1308:. 0/1:27,26:53:99:.:.:570,0,640:. 0/0:51,0:51:99:.:.:0,115,1495:. 0/1:30,22:52:99:.:.:514,0,771:. 0/0:53,0:53:99:.:.:0,107,1115:. 0/0:55,0:55:99:.:.:0,117,1401:. 0/1:21,26:47:99:.:.:644,0,564:. 1/1:0,51:51:99:.:.:1453,152,0:. 1/1:1,48:49:99:.:.:1360,114,0:. 1/1:0,49:49:99:.:.:1544,147,0:. 1/1:0,52:52:99:.:.:1623,156,0:. 0/0:52,0:52:99:.:.:0,120,1800:. 1/1:0,54:54:99:.:.:1528,161,0:. NW_016690287.1 417726 . G T 103185 . AC=142;AF=0.087;AN=1624;BaseQRankSum=5.95;DP=39574;ExcessHet=0.0000;FS=0.000;InbreedingCoeff=0.3862;MLEAC=148;MLEAF=0.091;MQ=60.00;MQRankSum=0.00;QD=18.75;ReadPosRankSum=0.00;SOR=0.253 GT:AD:DP:GQ:PGT:PID:PL:PS 0/0:52,0:52:92:.:.:0,92,1370:. 0/0:48,0:48:99:.:.:0,120,1800:. 0/0:49,0:49:99:.:.:0,120,1800:. 0/1:26,24:50:99:.:.:612,0,619:. 0/0:48,0:48:99:.:.:0,120,1800:. 0/1:23,27:50:99:.:.:685,0,528:. 0/1:21,29:50:99:.:.:742,0,453:. 0/0:50,0:50:99:.:.:0,120,1800:. 1/1:0,50:50:99:.:.:1626,150,0:. 0/0:49,0:49:99:.:.:0,120,1800:. 0/0:49,0:49:99:.:.:0,119,1416:. 1/1:0,50:50:99:.:.:1633,150,0:. 1/1:0,50:50:99:.:.:1673,150,0:. NW_016690287.1 561073 . G A 467552 . AC=674;AF=0.435;AN=1548;BaseQRankSum=0.865;DP=35401;ExcessHet=0.0000;FS=0.000;InbreedingCoeff=0.1905;MLEAC=734;MLEAF=0.474;MQ=60.00;MQRankSum=0.00;QD=20.71;ReadPosRankSum=0.00;SOR=0.546 GT:AD:DP:GQ:PGT:PID:PL:PS 0/1:13,36:49:99:.:.:924,0,237:. 0/1:18,32:50:99:.:.:773,0,383:. 0/1:25,24:49:99:.:.:612,0,635:. 0/1:19,31:50:99:.:.:830,0,428:. 0/0:50,0:50:99:.:.:0,120,1800:. 0/1:27,20:47:99:.:.:472,0,685:. 0/0:49,0:49:99:.:.:0,120,1800:. 1/1:0,43:43:99:.:.:1321,129,0:. 0/1:19,29:48:99:.:.:740,0,421:. 0/0:46,0:46:99:.:.:0,120,1800:. 0/0:50,0:50:99:.:.:0,120,1800:. 1/1:0,47:47:99:.:.:1391,141,0:. 1/1:0,46:46:99:.:.:1364,138,0:. NW_016690287.1 1064661 . C A 1901.55 . AC=3;AF=1.843e-03;AN=1628;BaseQRankSum=6.14;DP=39607;ExcessHet=3.0183;FS=0.000;InbreedingCoeff=0.5597;MLEAC=3;MLEAF=1.843e-03;MQ=60.00;MQRankSum=0.00;QD=12.68;ReadPosRankSum=0.00;SOR=0.525 GT:AD:DP:GQ:PGT:PID:PL:PS 0/0:49,0:49:99:.:.:0,120,1800:. 0/0:50,0:50:99:.:.:0,120,1800:. 0/1:29,21:50:99:.:.:493,0,596:. 0/0:48,0:48:99:.:.:0,110,1485:. 0|1:25,25:50:99:0|1:1064654_A_G:966,0,965:1064654 0/0:49,0:49:99:.:.:0,120,1800:. 0/1:28,22:50:99:.:.:515,0,587:. 0/0:50,0:50:99:.:.:0,120,1800:. 0/0:50,0:50:99:.:.:0,120,1800:. 0/0:49,0:49:99:.:.:0,116,1458:. 0/0:50,0:50:99:.:.:0,120,1464:. 0/0:49,0:49:99:.:.:0,120,1800:. 0/0:49,0:49:99:.:.:0,120,1800:. NW_016690287.1 2231674 . G A 800631 . 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AC=3;AF=1.921e-03;AN=1562;BaseQRankSum=6.58;DP=39578;ExcessHet=0.0042;FS=0.000;InbreedingCoeff=0.5492;MLEAC=3;MLEAF=1.921e-03;MQ=60.00;MQRankSum=0.00;QD=27.39;ReadPosRankSum=-9.600e-01;SOR=2.279 GT:AD:DP:GQ:PGT:PID:PL:PS 0/0:52,0:52:99:.:.:0,120,1800:. 0/0:49,0:49:99:.:.:0,107,1370:. 0/0:49,0:49:99:.:.:0,120,1800:. 0/0:50,0:50:99:.:.:0,118,1344:. 0/0:48,0:48:99:.:.:0,119,1399:. 0/0:49,0:49:99:.:.:0,120,1800:. 0/0:52,0:52:99:.:.:0,120,1800:. 0/0:53,0:53:99:.:.:0,120,1800:. 0|1:25,25:50:99:0|1:3676679_T_C:826,0,941:3676679 0/0:60,0:60:99:.:.:0,120,1800:. 0/0:59,0:59:99:.:.:0,120,1563:. 0/0:53,0:53:99:.:.:0,120,1800:. 1|1:0,51:51:99:1|1:3676679_T_C:2017,153,0:3676679 NW_016690287.1 4440481 . C T 2668.05 . AC=6;AF=3.686e-03;AN=1628;BaseQRankSum=6.53;DP=40115;ExcessHet=3.0505;FS=0.000;InbreedingCoeff=0.5273;MLEAC=6;MLEAF=3.686e-03;MQ=60.00;MQRankSum=0.00;QD=8.89;ReadPosRankSum=0.258;SOR=0.410 GT:AD:DP:GQ:PGT:PID:PL:PS 0/0:49,0:49:99:.:.:0,120,1800:. 0/0:51,0:51:99:.:.:0,120,1800:. 0/0:51,0:51:99:.:.:0,120,1800:. 0/0:53,0:53:99:.:.:0,120,1800:. 0/0:52,0:52:99:.:.:0,120,1800:. 0/0:48,0:48:99:.:.:0,109,1283:. 0/0:48,0:48:99:.:.:0,120,1800:. 0/1:27,25:52:99:.:.:500,0,539:. 0/0:50,0:50:99:.:.:0,120,1800:. 0/0:51,0:51:99:.:.:0,120,1800:. 0/1:32,17:49:99:.:.:324,0,673:. 0/1:30,21:52:99:.:.:434,0,618:. 0/0:54,0:54:99:.:.:0,120,1800:. NW_016690287.1 4570032 . G A 1.18028e+06 . AC=1146;AF=0.707;AN=1622;BaseQRankSum=5.40;DP=39158;ExcessHet=0.0000;FS=0.000;InbreedingCoeff=0.2230;MLEAC=1192;MLEAF=0.735;MQ=59.99;MQRankSum=0.00;QD=34.57;ReadPosRankSum=0.00;SOR=0.567 GT:AD:DP:GQ:PGT:PID:PL:PS 0|1:27,20:47:99:0|1:4570032_G_A:737,0,1074:4570032 0/0:50,0:50:99:.:.:0,120,1800:. 0/0:49,0:49:99:.:.:0,120,1800:. 0/0:47,0:47:99:.:.:0,120,1800:. 0/0:49,0:49:99:.:.:0,109,1390:. 0/0:49,0:49:99:.:.:0,120,1800:. 0|1:19,31:50:99:0|1:4570032_G_A:1244,0,704:4570032 0|1:26,19:45:99:0|1:4570032_G_A:706,0,1035:4570032 1|1:0,45:45:99:1|1:4570032_G_A:2010,135,0:4570032 0/0:55,0:55:99:.:.:0,120,1800:. 0/0:49,0:49:99:.:.:0,120,1800:. 1|1:0,50:50:99:1|1:4570032_G_A:2245,151,0:4570032 0|1:29,22:51:99:0|1:4570032_G_A:836,0,1147:4570032 NW_016690250.1 234622 . C G 212997 . AC=254;AF=0.160;AN=1586;BaseQRankSum=-1.760e-01;DP=36798;ExcessHet=0.0000;FS=2.321;InbreedingCoeff=0.5492;MLEAC=270;MLEAF=0.170;MQ=59.99;MQRankSum=0.00;QD=26.51;ReadPosRankSum=0.00;SOR=1.340 GT:AD:DP:GQ:PGT:PID:PL:PS 0/0:50,0:50:99:.:.:0,118,1369:. 1|1:0,51:51:99:1|1:234612_C_T:2247,152,0:234612 1|1:0,49:49:99:1|1:234612_C_T:2199,147,0:234612 1|1:0,50:50:99:1|1:234612_C_T:2244,151,0:234612 1|1:0,49:49:99:1|1:234612_C_T:2193,147,0:234612 0/1:29,18:47:99:.:.:404,0,743:. 1|1:0,48:48:99:1|1:234612_C_T:2152,144,0:234612 1|1:0,49:49:99:1|1:234612_C_T:2195,147,0:234612 1|1:0,48:48:99:1|1:234612_C_T:2160,144,0:234612 1|1:1,46:47:99:1|1:234612_C_T:2051,132,0:234612 1|1:0,48:48:99:1|1:234612_C_T:2160,144,0:234612 1|1:0,50:50:99:1|1:234612_C_T:2250,151,0:234612 1|1:0,46:46:99:1|1:234612_C_T:2063,138,0:234612 NW_016690250.1 586154 . A C 112688 . AC=115;AF=0.071;AN=1630;BaseQRankSum=-6.465e+00;DP=39740;ExcessHet=0.0000;FS=4.093;InbreedingCoeff=0.4283;MLEAC=119;MLEAF=0.073;MQ=60.00;MQRankSum=0.00;QD=24.56;ReadPosRankSum=0.00;SOR=1.921 GT:AD:DP:GQ:PGT:PID:PL:PS 0/0:50,0:50:99:.:.:0,120,1800:. 0/0:49,0:49:99:.:.:0,120,1800:. 0/0:50,0:50:99:.:.:0,120,1800:. 0|1:27,21:48:99:0|1:586153_T_A:796,0,1071:586153 0|1:28,16:45:99:0|1:586153_T_A:588,0,1128:586153 0/0:50,0:50:99:.:.:0,120,1800:. 1|1:0,50:50:99:1|1:586153_T_A:2215,150,0:586153 0/0:50,0:50:99:.:.:0,120,1800:. 0/0:50,0:50:99:.:.:0,120,1800:. 0/0:47,0:47:99:.:.:0,120,1800:. 0/0:50,0:50:99:.:.:0,120,1800:. 0/0:50,0:50:99:.:.:0,120,1332:. 0/0:48,0:48:99:.:.:0,120,1800:. NW_016690250.1 868148 . C T 67957.3 . AC=71;AF=0.044;AN=1622;BaseQRankSum=5.72;DP=34184;ExcessHet=-0.0000;FS=23.869;InbreedingCoeff=0.7828;MLEAC=74;MLEAF=0.046;MQ=59.99;MQRankSum=0.00;QD=24.27;ReadPosRankSum=0.00;SOR=3.676 GT:AD:DP:GQ:PGT:PID:PL:PS 0|1:28,21:49:99:0|1:868148_C_T:798,0,1104:868148 1|1:0,47:47:99:1|1:868143_A_G:2115,141,0:868143 1|1:0,48:48:99:1|1:868143_A_G:2160,144,0:868143 1|1:0,48:48:99:1|1:868143_A_G:2160,144,0:868143 0|1:27,21:48:99:0|1:868138_A_G:801,0,1071:868138 1|1:0,38:38:99:1|1:868143_A_G:1710,114,0:868143 0|1:24,20:44:99:0|1:868148_C_T:768,0,948:868148 0|1:17,30:47:99:0|1:868148_C_T:1183,0,624:868148 0|1:25,22:47:99:0|1:868148_C_T:818,0,984:868148 0|1:21,26:47:99:0|1:868148_C_T:1020,0,804:868148 1|1:0,45:45:99:1|1:868143_A_G:2018,135,0:868143 1|1:0,49:49:99:1|1:868143_A_G:2205,147,0:868143 1|1:0,47:47:99:1|1:868143_A_G:2115,141,0:868143 NW_016690250.1 948994 . C T 277384 . AC=230;AF=0.141;AN=1630;BaseQRankSum=4.42;DP=50163;ExcessHet=0.0000;FS=1.124;InbreedingCoeff=0.3499;MLEAC=238;MLEAF=0.146;MQ=60.00;MQRankSum=0.00;QD=14.96;ReadPosRankSum=-1.930e-01;SOR=0.748 GT:AD:DP:GQ:PGT:PID:PL:PS 1/1:2,100:102:99:.:.:2572,253,0:. 1/1:1,91:92:99:.:.:2427,264,0:. 1/1:0,100:100:99:.:.:2593,297,0:. 1/1:0,121:121:99:.:.:3103,358,0:. 1/1:0,97:97:99:.:.:2546,287,0:. 1/1:0,99:99:99:.:.:2618,293,0:. 0/1:55,43:98:99:.:.:811,0,1008:. 0/0:56,0:56:99:.:.:0,120,1800:. 0/0:55,0:55:99:.:.:0,120,1800:. 0/0:51,0:51:99:.:.:0,120,1800:. 0/0:55,0:55:99:.:.:0,120,1800:. 0/0:52,0:52:99:.:.:0,120,1800:. 0/0:53,0:53:99:.:.:0,120,1800:. NW_016690250.1 3034808 . C T 3502 . AC=6;AF=3.736e-03;AN=1606;BaseQRankSum=6.72;DP=34887;ExcessHet=3.0510;FS=0.000;InbreedingCoeff=0.5284;MLEAC=6;MLEAF=3.736e-03;MQ=60.00;MQRankSum=0.00;QD=11.95;ReadPosRankSum=0.00;SOR=0.700 GT:AD:DP:GQ:PL 0/0:47,0:47:99:0,120,1800 0/0:49,0:49:99:0,120,1800 0/0:46,0:46:99:0,116,1320 0/0:49,0:49:99:0,120,1800 0/0:51,0:51:99:0,120,1800 0/0:49,0:49:99:0,120,1800 0/1:24,23:47:99:566,0,525 0/1:24,26:50:99:649,0,495 0/0:48,0:48:99:0,120,1800 0/1:25,25:50:99:570,0,534 0/1:22,27:49:99:679,0,479 0/0:49,0:49:99:0,120,1800 0/0:49,0:49:99:0,120,1800 NW_016690250.1 3420754 . T A 2988.64 . AC=5;AF=3.090e-03;AN=1618;BaseQRankSum=-7.226e+00;DP=63503;ExcessHet=0.0135;FS=0.000;InbreedingCoeff=0.5869;MLEAC=5;MLEAF=3.090e-03;MQ=60.00;MQRankSum=0.00;QD=11.07;ReadPosRankSum=-6.041e+00;SOR=0.693 GT:AD:DP:GQ:PL 0/0:94,0:94:99:0,120,1800 0/0:98,0:98:99:0,120,1800 0/0:93,0:93:99:0,120,1800 0/0:88,0:88:99:0,120,1800 0/0:52,0:52:99:0,113,1334 0/0:41,0:41:99:0,119,674 0/1:20,28:48:99:663,0,449 0/1:52,45:97:99:961,0,1254 0/0:98,0:98:99:0,120,1800 0/0:99,0:99:99:0,120,1800 0/0:97,0:97:99:0,120,1800 0/1:63,31:94:99:591,0,1660 1/1:0,31:31:93:889,93,0 NW_016690250.1 3771327 . C T 5339.41 . AC=9;AF=5.562e-03;AN=1618;BaseQRankSum=6.85;DP=38261;ExcessHet=0.0003;FS=0.000;InbreedingCoeff=0.5565;MLEAC=9;MLEAF=5.562e-03;MQ=60.00;MQRankSum=0.00;QD=15.66;ReadPosRankSum=0.00;SOR=1.182 GT:AD:DP:GQ:PL 0/1:30,19:49:99:453,0,743 0/1:27,21:48:99:481,0,605 1/1:0,47:47:99:1443,141,0 0/0:48,0:48:99:0,120,1800 0/0:49,0:49:99:0,120,1800 0/0:49,0:49:99:0,120,1800 0/0:49,0:49:99:0,120,1800 0/0:49,0:49:99:0,120,1800 0/0:50,0:50:99:0,120,1800 0/0:49,0:49:99:0,120,1800 0/0:48,0:48:99:0,117,1156 0/0:50,0:50:99:0,119,686 0/0:50,0:50:99:0,117,1086 NW_016690250.1 4692030 . T C 56023 . AC=103;AF=0.064;AN=1612;BaseQRankSum=-1.227e+00;DP=25339;ExcessHet=0.0000;FS=0.000;InbreedingCoeff=0.3942;MLEAC=108;MLEAF=0.067;MQ=60.00;MQRankSum=0.00;QD=17.73;ReadPosRankSum=0.00;SOR=0.196 GT:AD:DP:GQ:PL 0/0:47,0:47:99:0,118,1251 0/0:42,0:42:99:0,103,1110 0/0:47,0:47:99:0,117,1355 0/0:17,0:17:51:0,51,434 0/0:46,0:46:99:0,118,1185 0/0:38,0:38:99:0,114,936 0/0:48,0:48:99:0,120,1800 0/0:20,0:20:60:0,60,511 0/1:18,18:36:99:370,0,391 0/0:50,0:50:99:0,120,1800 0/0:43,0:43:99:0,104,619 0/1:16,33:49:99:712,0,293 0/1:24,14:38:99:250,0,568 NW_016690252.1 846568 . G C 18471.6 . AC=17;AF=0.011;AN=1616;BaseQRankSum=4.97;DP=40644;ExcessHet=0.0000;FS=0.000;InbreedingCoeff=0.6985;MLEAC=18;MLEAF=0.011;MQ=60.00;MQRankSum=0.00;QD=29.00;ReadPosRankSum=0.00;SOR=2.238 GT:AD:DP:GQ:PGT:PID:PL:PS 0/0:54,0:54:99:.:.:0,99,1482:. 1/1:2,50:52:73:.:.:2167,73,0:. 1/1:0,94:94:99:.:.:3342,281,0:. 0/0:50,0:50:99:.:.:0,103,769:. 1/1:0,96:96:99:.:.:3312,287,0:. 0/1:25,25:50:99:.:.:439,0,141:. 0/0:53,0:53:99:.:.:0,120,1800:. 0/0:51,0:51:99:.:.:0,107,1319:. 0/0:47,0:47:99:.:.:0,112,1296:. 0/0:48,0:48:99:.:.:0,115,1135:. 0/0:53,0:53:99:.:.:0,107,1272:. 0/0:52,0:52:99:.:.:0,111,1336:. 0/0:46,0:46:99:.:.:0,120,1800:. NW_016690252.1 3179364 . C T 320413 . AC=490;AF=0.300;AN=1632;BaseQRankSum=5.12;DP=39222;ExcessHet=-0.0000;FS=2.394;InbreedingCoeff=0.6093;MLEAC=506;MLEAF=0.310;MQ=60.00;MQRankSum=0.00;QD=20.99;ReadPosRankSum=0.00;SOR=0.079 GT:AD:DP:GQ:PGT:PID:PL:PS 0/0:45,0:45:99:.:.:0,120,1800:. 0/0:48,0:48:99:.:.:0,120,1800:. 0/0:48,0:48:99:.:.:0,120,1051:. 0/1:24,24:48:99:.:.:521,0,408:. 1/1:0,53:53:99:.:.:1430,157,0:. 1/1:0,51:51:99:.:.:1362,152,0:. 0/0:45,0:45:99:.:.:0,120,1800:. 0/0:47,0:47:99:.:.:0,120,1800:. 1/1:0,50:50:99:.:.:1367,148,0:. 0/0:46,0:46:99:.:.:0,119,1434:. 0/0:49,0:49:99:.:.:0,119,1347:. 1/1:0,50:50:99:.:.:1363,149,0:. 1/1:0,48:48:99:.:.:1343,144,0:. NW_016690252.1 3289275 . A G 6979.71 . AC=18;AF=0.011;AN=1622;BaseQRankSum=-2.713e+00;DP=37739;ExcessHet=0.0000;FS=11.331;InbreedingCoeff=0.6142;MLEAC=16;MLEAF=9.864e-03;MQ=60.00;MQRankSum=0.00;QD=19.18;ReadPosRankSum=0.00;SOR=0.064 GT:AD:DP:GQ:PL 0/1:2,11:23:18:265,0,18 0/0:47,0:47:99:0,118,1383 0/0:46,0:46:99:0,103,1243 1/1:0,48:48:99:1460,144,0 0/1:28,18:47:99:408,0,715 1/1:0,48:48:99:1359,144,0 0/1:27,20:47:99:407,0,628 0/1:26,22:48:99:483,0,594 0/0:49,0:49:99:0,120,1800 0/0:47,0:47:99:0,120,1800 0/0:49,0:49:99:0,116,1328 0/0:50,0:50:99:0,116,1276 0/0:49,0:49:99:0,120,1800 NW_016690252.1 3511522 . C T 10879.9 . AC=17;AF=0.010;AN=1630;BaseQRankSum=6.15;DP=38895;ExcessHet=0.0000;FS=0.000;InbreedingCoeff=0.5434;MLEAC=18;MLEAF=0.011;MQ=60.00;MQRankSum=0.00;QD=18.92;ReadPosRankSum=0.00;SOR=1.516 GT:AD:DP:GQ:PGT:PID:PL:PS 0/0:49,0:49:99:.:.:0,112,1302:. 0/0:50,0:50:99:.:.:0,120,1800:. 0/1:19,26:45:99:.:.:651,0,307:. 0/1:25,20:45:99:.:.:452,0,465:. 0/1:24,23:47:99:.:.:497,0,926:. 0/1:22,24:46:99:.:.:524,0,384:. 0/0:47,0:47:99:.:.:0,105,1296:. 0/0:48,0:48:99:.:.:0,119,1375:. 0|1:24,22:46:99:0|1:3511509_T_G:844,0,942:3511509 0/0:51,0:51:99:.:.:0,117,1338:. 0/0:53,0:53:99:.:.:0,120,1800:. 0/0:45,0:45:99:.:.:0,120,1800:. 0/0:46,0:46:99:.:.:0,113,1216:. NW_016690252.1 3751194 . G A 9359.34 . AC=14;AF=8.783e-03;AN=1594;BaseQRankSum=6.31;DP=37664;ExcessHet=0.0000;FS=0.000;InbreedingCoeff=0.5580;MLEAC=14;MLEAF=8.783e-03;MQ=60.00;MQRankSum=0.00;QD=18.10;ReadPosRankSum=0.00;SOR=1.337 GT:AD:DP:GQ:PGT:PID:PL:PS 0/0:47,0:47:99:.:.:0,120,1800:. 0/0:49,0:49:99:.:.:0,120,1800:. 0/0:48,0:48:99:.:.:0,112,1357:. 0/1:20,30:50:99:.:.:712,0,381:. 0/0:47,0:47:99:.:.:0,120,1800:. 0/0:49,0:49:99:.:.:0,120,1800:. 0/1:19,31:50:99:.:.:683,0,320:. 0/1:22,25:47:99:.:.:576,0,419:. 0/0:49,0:49:99:.:.:0,119,1379:. 0/1:24,25:49:99:.:.:550,0,453:. 0/0:49,0:49:99:.:.:0,120,1800:. 0/0:49,0:49:99:.:.:0,120,1800:. 0/0:47,0:47:99:.:.:0,119,1352:. NW_016690252.1 4104591 . A G 8217.75 . AC=8;AF=4.963e-03;AN=1612;BaseQRankSum=-5.135e+00;DP=62659;ExcessHet=0.0000;FS=0.000;InbreedingCoeff=0.6277;MLEAC=8;MLEAF=4.963e-03;MQ=60.00;MQRankSum=0.00;QD=32.74;ReadPosRankSum=-6.767e+00;SOR=3.006 GT:AD:DP:GQ:PGT:PID:PL:PS 0/0:76,0:76:99:.:.:0,120,1800:. 0/0:51,0:51:99:.:.:0,117,1360:. 0/0:63,0:63:99:.:.:0,103,1639:. 0/0:63,0:63:99:.:.:0,120,1800:. 0/0:55,0:55:99:.:.:0,108,1371:. 0/0:57,0:57:99:.:.:0,120,1800:. 0/0:49,0:49:99:.:.:0,120,1800:. 0|1:19,32:51:99:0|1:4104591_A_G:766,0,421:4104591 1|1:0,48:48:99:1|1:4104588_TAA_T:2160,144,0:4104588 0/0:47,0:47:99:.:.:0,120,1800:. 0|1:27,23:50:99:0|1:4104588_TAA_T:878,0,1029:4104588 1|1:0,49:49:99:1|1:4104588_TAA_T:2205,147,0:4104588 1|1:0,53:53:99:1|1:4104588_TAA_T:2385,160,0:4104588 NW_016690252.1 4612107 . G A 3995.8 . AC=6;AF=3.717e-03;AN=1614;BaseQRankSum=6.51;DP=37875;ExcessHet=0.0202;FS=0.000;InbreedingCoeff=0.5536;MLEAC=6;MLEAF=3.717e-03;MQ=60.00;MQRankSum=0.00;QD=16.24;ReadPosRankSum=0.00;SOR=1.304 GT:AD:DP:GQ:PL 0/0:50,0:50:99:0,120,1800 1/1:0,50:50:99:1527,150,0 0/0:51,0:51:99:0,108,1383 0/0:50,0:50:99:0,120,1800 0/1:22,28:50:99:733,0,474 0/0:49,0:49:99:0,120,1800 0/0:50,0:50:99:0,120,1800 0/0:49,0:49:99:0,114,1474 0/0:50,0:50:99:0,120,1800 0/0:52,0:52:99:0,120,1800 0/0:48,0:48:99:0,113,1437 0/0:50,0:50:99:0,120,1800 0/0:50,0:50:99:0,108,1403 NW_016690253.1 222671 . T C 4059.66 . AC=7;AF=4.348e-03;AN=1610;BaseQRankSum=-6.400e+00;DP=38743;ExcessHet=3.0672;FS=0.000;InbreedingCoeff=0.4955;MLEAC=7;MLEAF=4.348e-03;MQ=60.00;MQRankSum=0.00;QD=11.18;ReadPosRankSum=-8.830e-01;SOR=0.827 GT:AD:DP:GQ:PL 0/0:55,0:55:99:0,120,1800 0/0:52,0:52:99:0,120,1800 0/0:51,0:51:99:0,120,1800 0/0:50,0:50:99:0,120,1800 0/0:51,0:51:99:0,120,1800 0/1:24,29:53:99:637,0,582 0/0:47,0:47:99:0,120,1800 0/0:46,0:46:99:0,113,1281 0/1:29,22:51:99:452,0,717 0/1:26,30:56:99:682,0,623 0/1:16,35:51:99:819,0,337 0/0:53,0:53:99:0,120,1800 0/0:51,0:51:99:0,120,1800 NW_016690253.1 1418249 . A G 26076 . AC=46;AF=0.028;AN=1622;BaseQRankSum=-6.099e+00;DP=39018;ExcessHet=0.0000;FS=0.000;InbreedingCoeff=0.4363;MLEAC=47;MLEAF=0.029;MQ=59.99;MQRankSum=0.00;QD=13.80;ReadPosRankSum=0.00;SOR=0.742 GT:AD:DP:GQ:PL 0/0:50,0:50:99:0,120,1800 0/1:29,21:50:99:415,0,740 0/0:50,0:50:99:0,120,1800 0/0:48,0:48:99:0,120,1800 0/0:48,0:48:99:0,110,1353 1/1:0,50:50:99:1335,150,0 0/0:49,0:49:99:0,117,1287 0/1:25,25:50:99:539,0,969 1/1:0,48:48:99:1327,144,0 1/1:0,49:49:99:1401,147,0 1/1:0,50:50:99:1349,148,0 0/0:49,0:49:99:0,117,1221 0/1:25,25:50:99:543,0,595 NW_016690253.1 3864729 . T C 1334.2 . 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AC=15;AF=9.470e-03;AN=1584;BaseQRankSum=4.22;DP=34628;ExcessHet=0.0000;FS=0.000;InbreedingCoeff=0.5436;MLEAC=16;MLEAF=0.010;MQ=60.00;MQRankSum=0.00;QD=17.12;ReadPosRankSum=-3.210e+00;SOR=1.684 GT:AD:DP:GQ:PL 0/0:51,0:51:99:0,113,1205 0/0:52,0:52:99:0,109,987 1/1:0,43:43:99:1292,128,0 1/1:0,45:45:99:1283,134,0 0/1:10,27:37:99:644,0,153 0/0:16,0:16:48:0,48,396 0/0:46,0:46:99:0,120,1101 0/0:24,0:24:51:0,51,519 0/1:17,21:38:99:484,0,321 0/0:29,0:29:85:0,85,645 0/1:23,19:42:99:398,0,483 0/0:46,0:46:99:0,108,1138 0/0:52,0:52:99:0,120,1800 NW_016690254.1 1719441 . G C 440758 . 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AC=5;AF=3.079e-03;AN=1624;BaseQRankSum=-6.250e+00;DP=37140;ExcessHet=0.0134;FS=0.000;InbreedingCoeff=0.5786;MLEAC=5;MLEAF=3.079e-03;MQ=60.00;MQRankSum=0.00;QD=21.84;ReadPosRankSum=0.00;SOR=1.110 GT:AD:DP:GQ:PGT:PID:PL:PS 0/0:49,0:49:99:.:.:0,120,1800:. 0/0:48,0:48:99:.:.:0,120,1800:. 0/0:48,0:48:99:.:.:0,120,1800:. 1|1:0,49:49:99:1|1:3837535_T_C:2045,147,0:3837535 0|1:26,23:49:99:0|1:3837535_T_C:802,0,1005:3837535 0|1:28,21:49:99:0|1:3837535_T_C:742,0,1113:3837535 0/0:49,0:49:99:.:.:0,120,1800:. 0/0:48,0:48:99:.:.:0,116,1169:. 0/0:48,0:48:99:.:.:0,120,1264:. 0/0:48,0:48:99:.:.:0,115,701:. 0/0:49,0:49:99:.:.:0,119,1399:. 0/0:49,0:49:99:.:.:0,115,1387:. 0/0:48,0:48:99:.:.:0,118,1402:. NW_016690254.1 4249902 . C T 3065.1 . 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AC=78;AF=0.048;AN=1634;BaseQRankSum=5.64;DP=40095;ExcessHet=0.0000;FS=1.413;InbreedingCoeff=0.3338;MLEAC=81;MLEAF=0.050;MQ=59.99;MQRankSum=0.00;QD=14.78;ReadPosRankSum=0.00;SOR=1.175 GT:AD:DP:GQ:PGT:PID:PL:PS 0/0:50,0:50:99:.:.:0,120,1800:. 0/0:48,0:48:99:.:.:0,106,1110:. 0/0:48,0:48:99:.:.:0,118,1366:. 0/1:18,32:50:99:.:.:776,0,344:. 0/0:51,0:51:99:.:.:0,119,1606:. 0/1:28,20:48:99:.:.:440,0,683:. 0/0:49,0:49:99:.:.:0,112,1507:. 0/1:22,26:48:99:.:.:647,0,484:. 0/0:49,0:49:99:.:.:0,120,1800:. 0/0:52,0:52:99:.:.:0,109,1259:. 0/0:51,0:51:99:.:.:0,120,1800:. 0/0:53,0:53:99:.:.:0,110,1453:. 0/1:24,27:51:99:.:.:664,0,437:. NW_016690256.1 611499 . G A 21218.8 . 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AC=5;AF=3.067e-03;AN=1630;BaseQRankSum=-6.287e+00;DP=38388;ExcessHet=0.0134;FS=0.000;InbreedingCoeff=0.5733;MLEAC=5;MLEAF=3.067e-03;MQ=60.00;MQRankSum=0.00;QD=10.67;ReadPosRankSum=0.00;SOR=0.992 GT:AD:DP:GQ:PL 0/0:49,0:49:99:0,119,1299 0/0:46,0:46:99:0,106,1232 0/0:50,0:50:99:0,120,1466 0/0:50,0:50:99:0,115,1364 0/0:50,0:50:99:0,119,1541 0/0:49,0:49:99:0,120,1800 0/0:50,0:50:99:0,115,1276 0/0:48,0:48:99:0,120,1800 1/1:0,49:49:99:1162,147,0 0/1:26,23:49:99:399,0,596 0/0:50,0:50:99:0,120,1800 0/1:27,21:48:99:354,0,623 0/1:32,18:50:99:292,0,785 NW_016690256.1 1637543 . A G 29972.8 . 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AC=16;AF=9.877e-03;AN=1620;BaseQRankSum=-6.466e+00;DP=38113;ExcessHet=0.0001;FS=0.000;InbreedingCoeff=0.4970;MLEAC=17;MLEAF=0.010;MQ=60.00;MQRankSum=0.00;QD=3.39;ReadPosRankSum=0.00;SOR=1.362 GT:AD:DP:GQ:PL 0/1:19,30:49:99:152,0,467 0/1:20,30:50:99:149,0,759 0/1:23,26:49:99:112,0,899 1/1:0,50:50:99:476,127,0 0/0:47,0:47:99:0,120,1800 0/0:49,0:49:0:0,0,492 0/0:49,0:49:99:0,120,1800 0/1:27,23:50:79:79,0,688 0/0:48,0:48:99:0,120,1224 0/0:50,0:50:99:0,115,1273 0/1:23,27:50:99:119,0,567 0/0:49,0:49:99:0,101,1189 0/0:48,0:48:99:0,120,1800 NW_016690257.1 2016141 . C T 29642.4 . 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AC=10;AF=6.135e-03;AN=1630;BaseQRankSum=-6.511e+00;DP=39098;ExcessHet=0.0604;FS=0.000;InbreedingCoeff=0.4981;MLEAC=10;MLEAF=6.135e-03;MQ=60.00;MQRankSum=0.00;QD=6.04;ReadPosRankSum=0.00;SOR=1.012 GT:AD:DP:GQ:PL 0/0:43,0:43:99:0,120,1800 0/0:45,0:45:99:0,102,1004 0/0:50,0:50:99:0,120,1800 0/1:24,27:51:99:453,0,512 0/0:48,0:48:99:0,120,1800 0/1:23,29:52:99:133,0,467 0/0:50,0:50:99:0,120,1800 0/0:47,0:47:99:0,110,1208 0/1:19,29:48:99:158,0,391 0/1:25,25:50:99:125,0,510 0/0:48,0:48:99:0,120,1800 0/0:49,0:49:99:0,114,860 0/0:50,0:50:99:0,120,1800 NW_016690262.1 554401 . G A 9810.86 . AC=16;AF=9.792e-03;AN=1634;BaseQRankSum=6.63;DP=39299;ExcessHet=0.0000;FS=0.000;InbreedingCoeff=0.5548;MLEAC=17;MLEAF=0.010;MQ=60.00;MQRankSum=0.00;QD=16.71;ReadPosRankSum=0.00;SOR=1.438 GT:AD:DP:GQ:PL 0/0:48,0:48:99:0,120,1800 0/0:49,0:49:99:0,120,1351 0/1:26,23:49:99:536,0,554 0/1:28,21:49:99:458,0,628 0/0:50,0:50:99:0,120,1800 0/0:49,0:49:99:0,120,1800 0/1:25,23:48:99:520,0,522 0/0:49,0:49:99:0,120,1800 1/1:0,50:50:99:1748,149,0 0/0:49,0:49:99:0,120,1800 0/1:19,28:50:99:662,0,331 1/1:0,50:50:99:1436,150,0 1/1:0,48:48:99:1378,144,0 NW_016690262.1 1406337 . C T 68812.6 . 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AC=35;AF=0.022;AN=1616;BaseQRankSum=5.40;DP=39502;ExcessHet=0.0000;FS=8.737;InbreedingCoeff=0.5362;MLEAC=37;MLEAF=0.023;MQ=60.00;MQRankSum=0.00;QD=20.95;ReadPosRankSum=0.00;SOR=2.116 GT:AD:DP:GQ:PGT:PID:PL:PS 1/1:0,51:51:99:.:.:1441,153,0:. 0|1:26,24:50:99:0|1:2231735_C_G:523,0,593:2231735 0|1:29,22:51:99:0|1:2231735_C_G:489,0,641:2231735 0/0:49,0:49:99:.:.:0,120,1800:. 0/0:50,0:50:0:.:.:0,0,11:. 0/0:50,0:50:99:.:.:0,120,1800:. 1/1:0,50:50:99:.:.:1478,150,0:. 0/0:50,0:50:99:.:.:0,120,1800:. 1/1:0,50:50:99:.:.:1574,149,0:. 0/0:53,0:53:0:.:.:0,0,23:. 0/0:54,0:54:0:.:.:0,0,370:. 1/1:1,51:52:99:.:.:1551,145,0:. 1/1:0,52:52:99:.:.:1606,156,0:. NW_016690263.1 2766529 . A T 3585.57 . AC=5;AF=3.075e-03;AN=1626;BaseQRankSum=4.36;DP=38494;ExcessHet=0.0000;FS=0.000;InbreedingCoeff=0.5963;MLEAC=5;MLEAF=3.075e-03;MQ=60.00;MQRankSum=0.00;QD=24.39;ReadPosRankSum=1.00;SOR=3.434 GT:AD:DP:GQ:PL 0/0:52,0:52:99:0,114,1217 0/0:54,0:54:99:0,103,1384 0/0:46,0:46:99:0,120,1800 0/0:50,0:50:99:0,105,1208 0/0:51,0:51:99:0,120,1800 0/0:48,0:48:99:0,113,1303 0/0:46,0:46:99:0,120,1800 0/0:48,0:48:99:0,115,1198 0/1:22,24:46:99:574,0,508 0/0:54,0:54:99:0,120,1800 0/0:50,0:50:99:0,120,1800 1/1:0,51:51:99:1602,153,0 1/1:0,50:50:99:1531,150,0 NW_016690263.1 3184052 . T C 12224.8 . AC=21;AF=0.013;AN=1620;BaseQRankSum=-5.409e+00;DP=40082;ExcessHet=0.0000;FS=0.000;InbreedingCoeff=0.5646;MLEAC=22;MLEAF=0.014;MQ=60.00;MQRankSum=0.00;QD=15.19;ReadPosRankSum=0.767;SOR=3.863 GT:AD:DP:GQ:PL 0/0:51,0:51:99:0,114,1371 1/1:0,49:49:99:1338,147,0 0/0:52,0:52:99:0,120,1800 0/1:26,24:50:99:487,0,645 0/0:52,0:52:99:0,120,1800 0/0:51,0:51:99:0,100,1541 0/1:27,23:50:99:478,0,633 0/0:49,0:49:99:0,120,1800 0/0:54,0:54:99:0,104,1369 0/0:47,0:47:99:0,120,1800 0/0:50,0:50:99:0,120,1800 0/0:51,0:51:99:0,120,1800 0/0:51,0:51:99:0,120,1800 NW_016690264.1 1329504 . T C 16670.9 . AC=31;AF=0.019;AN=1628;BaseQRankSum=-5.202e+00;DP=38299;ExcessHet=0.6646;FS=0.000;InbreedingCoeff=0.3196;MLEAC=32;MLEAF=0.020;MQ=60.00;MQRankSum=0.00;QD=11.42;ReadPosRankSum=0.00;SOR=0.765 GT:AD:DP:GQ:PL 0/1:26,24:50:99:492,0,571 0/1:16,32:48:99:660,0,265 0/0:49,0:49:99:0,120,1800 0/0:48,0:48:99:0,102,1125 0/1:26,22:48:99:426,0,608 0/1:19,31:50:99:648,0,378 0/0:48,0:48:99:0,120,1800 0/0:47,0:47:99:0,115,1353 0/0:49,0:49:99:0,104,1310 0/0:48,0:48:99:0,119,1247 1/1:0,49:49:99:1278,147,0 0/0:49,0:49:99:0,120,1800 0/1:29,18:47:99:319,0,687 NW_016690264.1 3040124 . T C 8283.02 . AC=11;AF=6.799e-03;AN=1618;BaseQRankSum=-5.437e+00;DP=38966;ExcessHet=0.0000;FS=40.216;InbreedingCoeff=0.5989;MLEAC=12;MLEAF=7.417e-03;MQ=60.00;MQRankSum=0.00;QD=19.00;ReadPosRankSum=0.00;SOR=0.001 GT:AD:DP:GQ:PGT:PID:PL:PS 0/0:45,0:45:99:.:.:0,120,1800:. 0/0:46,0:46:99:.:.:0,120,1800:. 0/0:48,0:48:99:.:.:0,119,1365:. 0/0:49,0:49:99:.:.:0,120,1800:. 0/0:46,0:46:99:.:.:0,116,1226:. 0|1:23,79:102:99:0|1:3040124_T_C:2217,0,724:3040124 0/0:47,0:47:99:.:.:0,120,1800:. 0/1:28,18:46:99:.:.:412,0,752:. 0/1:29,18:47:99:.:.:396,0,824:. 0/0:47,0:47:99:.:.:0,120,1800:. 0/1:24,25:49:99:.:.:595,0,635:. 0/0:47,0:47:99:.:.:0,114,1284:. 1/1:0,49:49:99:.:.:1524,147,0:. NW_016690265.1 608206 . G A 3914.73 . 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AC=470;AF=0.294;AN=1600;BaseQRankSum=-5.576e+00;DP=38706;ExcessHet=0.0001;FS=0.000;InbreedingCoeff=0.1656;MLEAC=497;MLEAF=0.311;MQ=60.00;MQRankSum=0.00;QD=23.02;ReadPosRankSum=0.00;SOR=0.492 GT:AD:DP:GQ:PGT:PID:PL:PS 1/1:0,50:50:99:.:.:2250,151,0:. 0|1:20,28:48:99:0|1:1009684_C_T:642,0,471:1009684 1|1:0,49:49:99:1|1:1009684_C_T:2205,147,0:1009684 0|1:29,21:50:99:0|1:1009684_C_T:451,0,741:1009684 0/1:31,19:50:99:.:.:392,0,848:. 1|1:0,50:50:99:1|1:1009684_C_T:2243,151,0:1009684 1|1:0,48:48:99:1|1:1009684_C_T:2151,144,0:1009684 0|1:23,27:50:99:0|1:1009684_C_T:599,0,581:1009684 1|1:0,49:49:99:1|1:1009684_C_T:2197,147,0:1009684 1|1:0,50:50:99:1|1:1009684_C_T:2215,150,0:1009684 1|1:0,47:47:99:1|1:1009684_C_T:2115,141,0:1009684 1|1:0,48:48:99:1|1:1009684_C_T:2134,144,0:1009684 1|1:0,48:48:99:1|1:1009684_C_T:2160,144,0:1009684 NW_016690265.1 2225341 . C G 315468 . AC=529;AF=0.332;AN=1594;BaseQRankSum=-3.844e+00;DP=38634;ExcessHet=0.0000;FS=0.000;InbreedingCoeff=0.2816;MLEAC=567;MLEAF=0.356;MQ=60.00;MQRankSum=0.00;QD=16.45;ReadPosRankSum=0.00;SOR=1.172 GT:AD:DP:GQ:PGT:PID:PL:PS 0/0:50,0:50:99:.:.:0,120,1800:. 0/0:69,0:69:99:.:.:0,120,1800:. 0/0:50,0:50:99:.:.:0,120,1800:. 0/0:44,0:44:99:.:.:0,107,1314:. 0/0:49,0:49:99:.:.:0,120,1800:. 0/1:22,24:46:99:.:.:466,0,449:. 1/1:0,40:40:99:.:.:963,119,0:. 0/0:49,0:49:99:.:.:0,120,1800:. 0/1:25,24:49:99:.:.:397,0,498:. 0/0:52,0:52:99:.:.:0,118,1450:. 0/0:47,0:47:99:.:.:0,120,1800:. 0/0:49,0:49:99:.:.:0,120,1800:. 0/0:50,0:50:99:.:.:0,112,1071:. NW_016690265.1 2472268 . G A 381429 . 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AC=17;AF=0.011;AN=1616;BaseQRankSum=-6.371e+00;DP=36863;ExcessHet=-0.0000;FS=0.000;InbreedingCoeff=0.7437;MLEAC=18;MLEAF=0.011;MQ=60.00;MQRankSum=0.00;QD=8.07;ReadPosRankSum=0.00;SOR=6.282 GT:AD:DP:GQ:PL 0/0:49,0:49:99:0,120,1800 0/0:47,0:47:99:0,100,1247 1/1:0,44:44:99:419,112,0 1/1:0,49:49:99:466,125,0 1/1:0,47:47:99:447,120,0 1/1:0,49:49:99:466,125,0 1/1:0,48:48:99:457,122,0 0/0:49,0:49:99:0,116,1412 0/0:46,0:46:99:0,119,1164 0/0:49,0:49:99:0,110,1206 0/0:49,0:49:99:0,109,1241 0/0:48,0:48:99:0,101,1263 0/0:48,0:48:99:0,118,1310 NW_016690269.1 2596480 . T G 7131.5 . AC=7;AF=4.289e-03;AN=1632;BaseQRankSum=-2.202e+00;DP=40383;ExcessHet=0.0280;FS=1.104;InbreedingCoeff=0.5498;MLEAC=7;MLEAF=4.289e-03;MQ=60.00;MQRankSum=0.00;QD=12.11;ReadPosRankSum=0.317;SOR=0.640 GT:AD:DP:GQ:PL 0/0:49,0:49:99:0,109,1355 1/1:0,100:100:99:2659,299,0 0/0:49,0:49:99:0,118,1502 0/0:49,0:49:99:0,105,1409 0/1:51,47:98:99:976,0,1132 0/0:48,0:48:99:0,119,1227 0/1:51,46:97:99:905,0,1077 0/0:50,0:50:99:0,108,1544 0/0:50,0:50:99:0,119,1428 0/0:48,0:48:99:0,105,1583 0/0:49,0:49:99:0,120,1800 0/0:48,0:48:99:0,119,1420 0/0:49,0:49:99:0,120,1800 NW_016690270.1 2477941 . A G 492621 . AC=681;AF=0.416;AN=1636;BaseQRankSum=-6.281e+00;DP=42006;ExcessHet=0.0000;FS=1.854;InbreedingCoeff=0.2440;MLEAC=703;MLEAF=0.430;MQ=60.00;MQRankSum=0.00;QD=19.27;ReadPosRankSum=0.00;SOR=1.117 GT:AD:DP:GQ:PGT:PID:PL:PS 0/1:38,23:61:99:.:.:451,0,1196:. 0/1:31,19:50:99:.:.:375,0,799:. 0/0:49,0:49:99:.:.:0,117,1440:. 0/0:48,0:48:99:.:.:0,120,1800:. 0/1:26,27:53:99:.:.:581,0,633:. 0/1:25,23:48:99:.:.:497,0,624:. 0/1:25,24:49:99:.:.:536,0,639:. 0/0:51,0:51:99:.:.:0,120,1800:. 0/0:52,0:52:99:.:.:0,109,1313:. 0/0:50,0:50:99:.:.:0,113,1501:. 0/0:52,0:52:99:.:.:0,120,1800:. 0/1:25,26:51:99:.:.:546,0,599:. 0/1:27,24:51:99:.:.:505,0,635:. NW_016690270.1 2671879 . C T 84272.4 . AC=77;AF=0.047;AN=1622;BaseQRankSum=9.08;DP=80720;ExcessHet=0.2902;FS=0.000;InbreedingCoeff=0.2163;MLEAC=80;MLEAF=0.049;MQ=60.00;MQRankSum=0.00;QD=11.91;ReadPosRankSum=0.00;SOR=1.149 GT:AD:DP:GQ:PGT:PID:PL:PS 0/0:119,0:119:99:.:.:0,120,1800:. 0/0:120,0:120:99:.:.:0,120,1800:. 0/0:69,0:69:99:.:.:0,120,1800:. 1/1:0,84:85:99:.:.:2330,252,0:. 0/1:63,36:99:99:.:.:730,0,331:. 0/0:98,0:98:99:.:.:0,120,1800:. 0/1:58,43:102:99:.:.:811,0,2274:. 0/1:50,56:106:99:.:.:1258,0,180:. 0/0:92,0:92:99:.:.:0,120,1800:. 0/0:128,0:128:99:.:.:0,120,1800:. 0/0:118,0:118:99:.:.:0,120,1800:. 1/1:0,89:89:99:.:.:2373,267,0:. 1/1:0,118:118:99:.:.:3139,354,0:. NW_016690271.1 288119 . C T 85824.2 . AC=110;AF=0.068;AN=1622;BaseQRankSum=5.68;DP=39664;ExcessHet=0.2062;FS=0.000;InbreedingCoeff=0.1779;MLEAC=115;MLEAF=0.071;MQ=60.00;MQRankSum=0.00;QD=16.50;ReadPosRankSum=0.00;SOR=0.730 GT:AD:DP:GQ:PGT:PID:PL:PS 0/0:49,0:49:91:.:.:0,91,1139:. 0/0:49,0:49:99:.:.:0,120,1800:. 0/1:30,20:50:99:.:.:741,0,1189:. 0/0:50,0:50:99:.:.:0,120,1800:. 0/0:49,0:49:99:.:.:0,120,1800:. 0/0:49,0:49:99:.:.:0,120,1800:. 0/1:23,28:51:99:.:.:1107,0,856:. 0/0:49,0:49:99:.:.:0,120,1800:. 0/0:49,0:49:99:.:.:0,118,1373:. 0/0:49,0:49:99:.:.:0,120,1800:. 0/0:48,0:48:99:.:.:0,120,1800:. 0/0:47,0:47:99:.:.:0,103,1216:. 0/1:24,25:49:99:.:.:545,0,469:. NW_016690301.1 167718 . G A 117020 . AC=111;AF=0.069;AN=1612;BaseQRankSum=5.32;DP=39989;ExcessHet=0.0001;FS=10.590;InbreedingCoeff=0.2745;MLEAC=116;MLEAF=0.072;MQ=60.00;MQRankSum=0.00;QD=20.15;ReadPosRankSum=0.00;SOR=0.242 GT:AD:DP:GQ:PGT:PID:PL:PS 0/0:50,0:50:99:.:.:0,120,1800:. 0/0:47,0:47:99:.:.:0,118,1127:. 0/0:48,0:48:99:.:.:0,120,1800:. 1/1:1,49:50:99:.:.:1511,127,0:. 0/1:23,23:46:99:.:.:546,0,440:. 0/0:49,0:49:99:.:.:0,120,1800:. 0/0:48,0:48:99:.:.:0,120,1800:. 0/0:49,0:49:99:.:.:0,107,1208:. 0|1:28,21:49:99:0|1:167716_T_G:798,0,1113:167716 0/0:49,0:49:99:.:.:0,120,1800:. 0/1:29,21:50:99:.:.:474,0,590:. 0/0:50,0:50:99:.:.:0,120,1800:. 1|1:0,47:47:99:1|1:167718_G_A:1920,141,0:167718 NW_016690301.1 394082 . A G 166643 . AC=264;AF=0.162;AN=1634;BaseQRankSum=-1.548e+00;DP=40410;ExcessHet=0.0007;FS=0.000;InbreedingCoeff=0.1599;MLEAC=274;MLEAF=0.168;MQ=60.00;MQRankSum=0.00;QD=14.38;ReadPosRankSum=0.00;SOR=1.018 GT:AD:DP:GQ:PGT:PID:PL:PS 0/0:50,0:50:99:.:.:0,120,1800:. 0/1:23,26:49:99:.:.:634,0,888:. 1|1:1,47:48:99:1|1:394082_A_G:1660,115,0:394082 0/1:24,26:50:99:.:.:612,0,587:. 0/0:50,0:50:99:.:.:0,120,1800:. 0/0:51,0:51:99:.:.:0,120,1800:. 0/1:16,31:47:99:.:.:746,0,579:. 0/0:49,0:49:99:.:.:0,120,1800:. 0/0:47,0:47:99:.:.:0,120,1800:. 0/0:50,0:50:99:.:.:0,120,1800:. 0/0:50,0:50:99:.:.:0,120,1800:. 0/0:50,0:50:99:.:.:0,119,1606:. 0/0:48,0:48:99:.:.:0,120,1800:. NW_016690301.1 475996 . G A 123514 . AC=178;AF=0.110;AN=1618;BaseQRankSum=0.944;DP=39116;ExcessHet=0.0334;FS=1.498;InbreedingCoeff=0.1561;MLEAC=186;MLEAF=0.115;MQ=60.00;MQRankSum=0.00;QD=14.92;ReadPosRankSum=0.00;SOR=0.930 GT:AD:DP:GQ:PGT:PID:PL:PS 1/1:0,48:48:99:.:.:1423,144,0:. 1/1:0,48:48:99:.:.:1703,144,0:. 0|1:17,32:49:99:0|1:475996_G_A:1286,0,618:475996 0|1:29,19:48:99:0|1:475996_G_A:700,0,1151:475996 0/0:49,0:49:99:.:.:0,105,1147:. 0/1:26,22:48:99:.:.:511,0,627:. 0/0:49,0:49:99:.:.:0,120,1800:. 0/1:26,24:50:99:.:.:540,0,562:. 1/1:0,47:47:99:.:.:1773,141,0:. 0/0:50,0:50:99:.:.:0,115,1176:. 0/0:50,0:50:99:.:.:0,120,1444:. 0/0:49,0:49:99:.:.:0,119,1378:. 0/0:47,0:47:99:.:.:0,112,1026:. NW_016690301.1 846808 . C T 7596.58 . AC=13;AF=8.085e-03;AN=1608;BaseQRankSum=6.53;DP=35009;ExcessHet=0.0018;FS=0.000;InbreedingCoeff=0.5311;MLEAC=14;MLEAF=8.706e-03;MQ=60.00;MQRankSum=0.00;QD=14.44;ReadPosRankSum=0.00;SOR=1.116 GT:AD:DP:GQ:PL 0/0:51,0:51:99:0,120,1800 0/1:24,24:48:96:513,0,96 0/1:25,22:47:99:464,0,427 1/1:0,48:48:99:1883,144,0 0/1:28,19:47:99:386,0,501 0/1:21,26:47:94:546,0,94 0/0:49,0:49:99:0,120,1800 0/0:49,0:49:99:0,120,1800 0/0:52,0:52:99:0,120,1800 0/0:49,0:49:99:0,120,1800 0/1:28,21:49:99:426,0,132 0/1:26,23:49:99:506,0,455 1/1:0,49:49:99:1357,147,0 NW_016690301.1 2439637 . A G 212057 . AC=306;AF=0.188;AN=1630;BaseQRankSum=-9.000e-01;DP=40197;ExcessHet=0.0000;FS=3.124;InbreedingCoeff=0.2236;MLEAC=317;MLEAF=0.194;MQ=60.00;MQRankSum=0.00;QD=16.37;ReadPosRankSum=0.00;SOR=0.252 GT:AD:DP:GQ:PGT:PID:PL:PS 0|1:20,29:49:99:0|1:2439626_CT_C:1158,0,753:2439626 0/1:21,31:52:99:.:.:703,0,407:. 0|1:28,22:50:99:0|1:2439637_A_G:811,0,1105:2439637 0/0:49,0:49:99:.:.:0,120,1800:. 0/0:49,0:49:99:.:.:0,120,1271:. 0/0:47,0:47:99:.:.:0,120,1800:. 0/0:49,0:49:99:.:.:0,120,1800:. 0/1:22,26:48:99:.:.:578,0,489:. 1/1:0,50:50:99:.:.:1371,150,0:. 0/1:23,24:47:99:.:.:521,0,480:. 1/1:0,48:48:99:.:.:1422,144,0:. 1/1:0,48:48:99:.:.:1378,144,0:. 0/1:18,31:49:99:.:.:718,0,367:. NW_016690301.1 2681791 . A G 1097.3 . AC=9;AF=5.501e-03;AN=1636;BaseQRankSum=-6.691e+00;DP=39754;ExcessHet=0.0481;FS=0.000;InbreedingCoeff=0.4984;MLEAC=9;MLEAF=5.501e-03;MQ=60.00;MQRankSum=0.00;QD=2.80;ReadPosRankSum=0.00;SOR=0.823 GT:AD:DP:GQ:PL 0/0:45,0:45:99:0,120,1800 0/0:47,0:47:99:0,120,1800 0/0:48,0:48:99:0,120,1800 0/0:49,0:49:99:0,120,1800 0/0:49,0:49:99:0,120,1800 0/0:48,0:48:99:0,120,1800 0/0:49,0:49:99:0,119,1393 0/0:49,0:49:99:0,120,1800 0/0:49,0:49:99:0,114,1300 0/1:21,26:47:99:118,0,495 0/0:49,0:49:99:0,120,1800 0/1:29,20:49:52:52,0,663 0/1:23,25:48:99:105,0,498 NW_016690273.1 216801 . T C 17946.1 . AC=26;AF=0.016;AN=1634;BaseQRankSum=-6.256e+00;DP=39874;ExcessHet=0.0000;FS=0.000;InbreedingCoeff=0.5253;MLEAC=26;MLEAF=0.016;MQ=60.00;MQRankSum=0.00;QD=18.77;ReadPosRankSum=0.00;SOR=1.425 GT:AD:DP:GQ:PGT:PID:PL:PS 1|1:1,44:45:99:1|1:216801_T_C:1227,104,0:216801 1|1:0,46:46:99:1|1:216801_T_C:2062,138,0:216801 0|1:29,19:48:99:0|1:216801_T_C:362,0,686:216801 1|1:0,49:49:99:1|1:216801_T_C:2195,147,0:216801 0|1:27,23:50:99:0|1:216801_T_C:884,0,1064:216801 0/0:50,0:50:99:.:.:0,120,1800:. 0/0:50,0:50:99:.:.:0,120,1800:. 0/0:50,0:50:99:.:.:0,120,1800:. 0/1:17,32:49:99:.:.:629,0,306:. 0|1:23,25:48:99:0|1:216801_T_C:483,0,491:216801 0/0:50,0:50:99:.:.:0,120,1800:. 0|1:25,20:45:99:0|1:216801_T_C:360,0,534:216801 0/1:28,21:49:99:.:.:371,0,583:. NW_016690273.1 296181 . A T 21359.9 . AC=26;AF=0.016;AN=1626;BaseQRankSum=6.67;DP=56198;ExcessHet=0.0000;FS=0.000;InbreedingCoeff=0.5248;MLEAC=27;MLEAF=0.017;MQ=60.00;MQRankSum=0.00;QD=15.43;ReadPosRankSum=0.00;SOR=1.169 GT:AD:DP:GQ:PL 0/1:45,28:73:99:561,0,1789 1/1:0,73:75:99:1994,219,0 1/1:0,70:70:99:2025,210,0 0/0:63,0:63:99:0,120,1800 0/0:54,0:54:99:0,120,1800 0/1:34,33:67:99:822,0,1328 0/1:28,30:58:99:670,0,1067 0/0:54,0:54:99:0,120,1800 1/1:0,57:57:99:1691,170,0 0/0:66,0:66:99:0,120,1800 0/0:60,0:60:99:0,120,1800 0/0:51,0:51:99:0,120,1800 1/1:0,56:56:99:1608,167,0 NW_016690273.1 487460 . C T 142680 . AC=219;AF=0.134;AN=1638;BaseQRankSum=5.96;DP=40240;ExcessHet=0.0000;FS=0.000;InbreedingCoeff=0.2669;MLEAC=227;MLEAF=0.139;MQ=60.00;MQRankSum=0.00;QD=16.01;ReadPosRankSum=0.00;SOR=0.914 GT:AD:DP:GQ:PGT:PID:PL:PS 0/0:48,0:48:99:.:.:0,120,1800:. 1/1:1,50:51:99:.:.:1495,126,0:. 0/1:20,29:49:99:.:.:712,0,397:. 1/1:0,50:50:99:.:.:1584,150,0:. 1/1:0,51:51:99:.:.:1561,153,0:. 1/1:0,48:48:99:.:.:1468,144,0:. 0/1:26,24:50:99:.:.:584,0,568:. 0/1:28,23:51:99:.:.:539,0,599:. 0/0:50,0:50:99:.:.:0,120,1800:. 0/1:24,24:48:99:.:.:570,0,536:. 0/0:47,0:47:99:.:.:0,117,1369:. 0/0:50,0:50:99:.:.:0,120,1800:. 1/1:1,48:49:99:.:.:1372,119,0:. NW_016690273.1 1319836 . C T 3968.26 . AC=8;AF=5.563e-03;AN=1438;BaseQRankSum=5.53;DP=29621;ExcessHet=0.0002;FS=0.000;InbreedingCoeff=0.4960;MLEAC=9;MLEAF=6.259e-03;MQ=60.00;MQRankSum=0.00;QD=16.60;ReadPosRankSum=0.00;SOR=1.207 GT:AD:DP:GQ:PGT:PID:PL:PS 0/0:49,0:49:99:.:.:0,115,1597:. 0/0:50,0:50:99:.:.:0,120,1800:. 0/0:48,0:48:99:.:.:0,119,1336:. 0/0:47,0:47:99:.:.:0,120,1800:. 0/0:52,0:52:99:.:.:0,120,1800:. 0/0:51,0:51:99:.:.:0,120,1800:. 0/0:49,0:49:99:.:.:0,110,1306:. 0/0:50,0:50:99:.:.:0,120,1800:. 0/1:20,29:49:99:.:.:660,0,383:. 0/0:47,0:47:99:.:.:0,110,1221:. 0/0:47,0:47:99:.:.:0,120,1800:. 0/1:28,20:48:99:.:.:394,0,559:. 0/1:19,30:49:99:.:.:662,0,341:. NW_016690273.1 2890598 . C T 40875.3 . AC=69;AF=0.042;AN=1624;BaseQRankSum=5.91;DP=37197;ExcessHet=-0.0000;FS=0.000;InbreedingCoeff=0.6010;MLEAC=73;MLEAF=0.045;MQ=60.00;MQRankSum=0.00;QD=18.40;ReadPosRankSum=0.00;SOR=2.094 GT:AD:DP:GQ:PGT:PID:PL:PS 0/0:47,0:47:99:.:.:0,120,1800:. 0/0:46,0:46:99:.:.:0,113,1208:. 0/0:48,0:48:99:.:.:0,120,1800:. 1/1:1,47:48:99:.:.:1253,119,0:. 0/0:49,0:49:99:.:.:0,118,1333:. 0/0:45,0:45:99:.:.:0,108,1254:. 0/1:22,25:47:78:.:.:547,0,78:. 1/1:0,49:49:99:.:.:1384,146,0:. 1/1:0,47:47:99:.:.:1267,140,0:. 1/1:0,47:47:99:.:.:1241,139,0:. 1/1:0,54:54:99:.:.:1421,161,0:. 1/1:0,49:49:99:.:.:1317,147,0:. 1/1:0,50:50:99:.:.:1360,149,0:. NW_016690274.1 1274866 . A C 3580.23 . AC=9;AF=6.338e-03;AN=1420;BaseQRankSum=-6.591e+00;DP=29152;ExcessHet=0.0555;FS=0.000;InbreedingCoeff=0.5431;MLEAC=10;MLEAF=7.042e-03;MQ=60.00;MQRankSum=0.00;QD=9.06;ReadPosRankSum=0.00;SOR=0.922 GT:AD:DP:GQ:PL 0/0:50,0:50:99:0,117,1307 0/0:49,0:49:99:0,115,1401 0/0:49,0:49:99:0,115,1401 0/1:28,22:50:99:458,0,767 0/0:50,0:50:99:0,120,1800 0/0:49,0:49:99:0,119,1362 0/0:49,0:49:99:0,120,1800 0/1:20,30:50:99:660,0,503 0/0:49,0:49:99:0,116,1467 0/1:25,24:49:99:538,0,692 0/1:25,24:49:99:494,0,658 0/0:49,0:49:99:0,120,1800 1/1:0,50:50:99:1360,150,0 NW_016690274.1 3038309 . A G 63463.4 . AC=104;AF=0.064;AN=1628;BaseQRankSum=-6.222e+00;DP=40301;ExcessHet=0.0000;FS=1.230;InbreedingCoeff=0.2915;MLEAC=108;MLEAF=0.066;MQ=60.00;MQRankSum=0.00;QD=13.16;ReadPosRankSum=0.00;SOR=0.846 GT:AD:DP:GQ:PGT:PID:PL:PS 0/0:55,0:55:99:.:.:0,120,1800:. 1/1:0,46:46:99:.:.:1268,138,0:. 0/0:49,0:49:99:.:.:0,120,1800:. 0/1:22,29:51:99:.:.:596,0,462:. 1/1:0,50:50:99:.:.:1335,150,0:. 0/0:50,0:50:99:.:.:0,120,1800:. 0/0:50,0:50:99:.:.:0,120,1800:. 0/0:50,0:50:99:.:.:0,120,1800:. 0/0:50,0:50:99:.:.:0,120,1800:. 0/0:48,0:48:99:.:.:0,120,1800:. 0/0:51,0:51:99:.:.:0,120,1800:. 0/0:49,0:49:99:.:.:0,120,1800:. 0/0:49,0:49:99:.:.:0,120,1800:. NW_016690275.1 1153708 . A G 4924.85 . AC=9;AF=5.747e-03;AN=1566;BaseQRankSum=-4.011e+00;DP=34844;ExcessHet=0.0502;FS=0.000;InbreedingCoeff=0.5678;MLEAC=10;MLEAF=6.386e-03;MQ=60.00;MQRankSum=0.00;QD=12.50;ReadPosRankSum=0.00;SOR=0.929 GT:AD:DP:GQ:PL 0/1:23,26:49:99:603,0,523 0/0:49,0:49:99:0,120,1800 0/0:50,0:50:99:0,120,1180 0/0:49,0:49:99:0,119,1123 0/0:47,0:47:99:0,108,1369 0/0:49,0:49:99:0,118,1469 0/0:48,0:48:99:0,118,1172 0/1:26,24:50:99:513,0,621 0/0:49,0:49:99:0,115,1223 0/1:19,31:50:99:736,0,405 0/1:28,21:49:99:436,0,625 0/0:49,0:49:99:0,118,1175 0/0:49,0:49:99:0,120,1800 NW_016690275.1 2672592 . G T 343102 . AC=506;AF=0.311;AN=1628;BaseQRankSum=-6.260e-01;DP=39807;ExcessHet=-0.0000;FS=0.000;InbreedingCoeff=0.3105;MLEAC=525;MLEAF=0.322;MQ=60.00;MQRankSum=0.00;QD=18.28;ReadPosRankSum=0.00;SOR=0.339 GT:AD:DP:GQ:PGT:PID:PL:PS 1/1:0,50:50:99:.:.:1415,150,0:. 0/1:23,27:50:99:.:.:672,0,530:. 0/0:49,0:49:99:.:.:0,119,1226:. 0/0:47,0:47:99:.:.:0,116,1241:. 0/1:30,18:48:99:.:.:406,0,747:. 0/1:21,28:49:99:.:.:683,0,493:. 0/1:23,27:50:99:.:.:570,0,444:. 0/0:47,0:47:99:.:.:0,119,1129:. 0/0:48,0:48:99:.:.:0,120,1800:. 0/0:48,0:48:99:.:.:0,120,1800:. 0/0:49,0:49:99:.:.:0,120,1800:. 0/0:48,0:48:99:.:.:0,108,1425:. 0/0:49,0:49:99:.:.:0,120,1800:. NW_016690276.1 69395 . C T 16582.3 . AC=27;AF=0.017;AN=1630;BaseQRankSum=5.96;DP=38946;ExcessHet=0.0000;FS=0.000;InbreedingCoeff=0.5636;MLEAC=28;MLEAF=0.017;MQ=60.00;MQRankSum=0.00;QD=17.13;ReadPosRankSum=0.00;SOR=1.340 GT:AD:DP:GQ:PL 0/1:26,23:49:99:573,0,620 0/1:32,18:50:99:417,0,789 1/1:1,48:49:99:1465,118,0 0/1:28,20:48:99:449,0,655 0/0:50,0:50:99:0,115,1214 0/0:50,0:50:99:0,120,1800 1/1:0,50:50:99:1493,150,0 1/1:1,36:37:83:1076,83,0 0/0:50,0:50:99:0,120,1800 1/1:0,50:50:99:1554,150,0 0/0:49,0:49:99:0,120,1263 0/0:49,0:49:99:0,120,1800 0/1:29,21:50:99:493,0,633 NW_016690276.1 2189990 . C T 3093.73 . AC=9;AF=5.660e-03;AN=1590;BaseQRankSum=6.58;DP=38174;ExcessHet=0.0000;FS=0.000;InbreedingCoeff=0.6156;MLEAC=10;MLEAF=6.289e-03;MQ=60.00;MQRankSum=0.00;QD=12.58;ReadPosRankSum=0.00;SOR=1.071 GT:AD:DP:GQ:PL 0/0:49,0:49:99:0,120,1800 0/0:49,0:49:99:0,120,1800 0/0:49,0:49:99:0,120,1800 0/0:50,0:50:99:0,120,1800 0/1:22,28:50:83:614,0,83 0/0:48,0:48:99:0,120,1800 1/1:0,49:49:99:1254,147,0 0/0:49,0:49:99:0,120,1800 0/0:49,0:49:99:0,120,1800 0/0:49,0:49:99:0,120,1800 0/0:50,0:50:99:0,120,1800 0/0:50,0:50:99:0,120,1800 0/0:50,0:50:99:0,120,1800 NW_016690277.1 243322 . C T 71566.7 . AC=108;AF=0.067;AN=1624;BaseQRankSum=6.48;DP=38267;ExcessHet=0.0002;FS=0.000;InbreedingCoeff=0.2563;MLEAC=112;MLEAF=0.069;MQ=60.00;MQRankSum=0.00;QD=15.32;ReadPosRankSum=0.00;SOR=1.030 GT:AD:DP:GQ:PL 0/1:24,25:49:99:590,0,487 0/1:22,28:50:99:680,0,472 0/1:23,25:48:99:613,0,526 0/0:49,0:49:99:0,120,1800 0/1:24,26:50:99:618,0,439 0/0:49,0:49:99:0,120,1800 0/1:24,23:47:99:584,0,549 0/0:48,0:48:99:0,120,1437 0/1:25,24:49:99:586,0,509 0/0:49,0:49:99:0,118,1278 1/1:0,50:50:99:1524,150,0 0/0:49,0:49:99:0,120,1326 0/0:49,0:49:99:0,115,1272 NW_016690277.1 1130278 . G A 9491.02 . AC=13;AF=7.946e-03;AN=1636;BaseQRankSum=5.67;DP=40742;ExcessHet=0.0000;FS=0.000;InbreedingCoeff=0.6260;MLEAC=13;MLEAF=7.946e-03;MQ=60.00;MQRankSum=0.00;QD=23.91;ReadPosRankSum=0.00;SOR=1.720 GT:AD:DP:GQ:PGT:PID:PL:PS 0/0:48,0:48:99:.:.:0,120,1800:. 0/0:39,0:39:99:.:.:0,117,834:. 0/0:50,0:50:99:.:.:0,107,1308:. 0/1:20,19:39:99:.:.:465,0,449:. 0/0:48,0:48:99:.:.:0,120,1800:. 0/1:30,18:48:99:.:.:373,0,722:. 0/0:48,0:48:99:.:.:0,120,1800:. 0/0:48,0:48:99:.:.:0,120,1800:. 0/0:39,0:39:99:.:.:0,101,822:. 0/1:19,29:48:99:.:.:662,0,322:. 0/0:36,0:36:99:.:.:0,108,791:. 0/0:43,0:43:99:.:.:0,113,1153:. 0/0:42,0:42:99:.:.:0,120,1800:. NW_016690277.1 2103970 . T C 4537.09 . AC=27;AF=0.017;AN=1632;BaseQRankSum=-6.641e+00;DP=42480;ExcessHet=0.0000;FS=0.000;InbreedingCoeff=0.5945;MLEAC=28;MLEAF=0.017;MQ=60.00;MQRankSum=0.00;QD=4.42;ReadPosRankSum=0.00;SOR=1.789 GT:AD:DP:GQ:PL 1/1:1,50:51:99:444,99,0 1/1:1,52:53:99:466,107,0 0/1:25,23:48:85:85,0,654 0/1:23,29:52:99:133,0,579 0/1:29,23:52:73:73,0,737 1/1:1,55:56:99:491,110,0 0/1:24,26:50:99:109,0,504 0/0:49,0:49:99:0,120,1800 0/0:50,0:50:99:0,120,1800 0/1:28,22:50:70:70,0,601 0/1:22,25:47:99:108,0,477 0/0:55,0:55:99:0,105,1442 0/1:48,50:98:99:204,0,1108 NW_016690278.1 839059 . A G 8934.91 . AC=44;AF=0.027;AN=1628;BaseQRankSum=-2.418e+00;DP=38523;ExcessHet=-0.0000;FS=0.000;InbreedingCoeff=0.8023;MLEAC=46;MLEAF=0.028;MQ=60.00;MQRankSum=0.00;QD=8.06;ReadPosRankSum=0.00;SOR=5.660 GT:AD:DP:GQ:PL 0/0:45,0:45:99:0,120,1800 0/0:47,0:47:99:0,111,1235 0/0:48,0:48:99:0,107,1147 1/1:0,50:50:99:476,127,0 0/1:30,20:50:50:50,0,748 0/0:47,0:47:99:0,99,1216 0/0:46,0:46:99:0,120,1800 0/1:28,21:49:62:62,0,681 1/1:0,50:50:99:476,127,0 0/0:49,0:49:99:0,120,1800 0/0:46,0:46:99:0,115,1335 1/1:0,51:51:99:485,130,0 1/1:0,50:50:99:476,127,0 NW_016690278.1 3417292 . C T 24743.8 . AC=45;AF=0.028;AN=1608;BaseQRankSum=6.54;DP=39157;ExcessHet=-0.0000;FS=0.000;InbreedingCoeff=0.7045;MLEAC=46;MLEAF=0.029;MQ=60.00;MQRankSum=0.00;QD=19.47;ReadPosRankSum=0.00;SOR=2.822 GT:AD:DP:GQ:PGT:PID:PL:PS 0/0:52,0:52:99:.:.:0,120,1800:. 0/0:49,0:49:99:.:.:0,100,1418:. 0/0:50,0:50:99:.:.:0,120,1800:. 0/0:48,0:48:99:.:.:0,106,1281:. 0/1:27,23:50:99:.:.:504,0,119:. 0/0:50,0:50:99:.:.:0,120,1800:. 0/0:51,0:51:99:.:.:0,120,1800:. 0/1:28,22:50:99:.:.:515,0,129:. 0/0:46,0:46:99:.:.:0,119,1411:. 0/0:51,0:51:99:.:.:0,119,1451:. 0/1:33,18:51:99:.:.:413,0,195:. 0/0:48,0:48:99:.:.:0,120,1168:. 0/0:48,0:48:99:.:.:0,120,1800:. NW_016690280.1 700375 . C T 6537.4 . AC=11;AF=6.765e-03;AN=1626;BaseQRankSum=5.25;DP=39059;ExcessHet=0.0000;FS=0.000;InbreedingCoeff=0.6056;MLEAC=11;MLEAF=6.765e-03;MQ=60.00;MQRankSum=0.00;QD=16.81;ReadPosRankSum=0.00;SOR=1.923 GT:AD:DP:GQ:PL 0/0:56,0:56:99:0,120,1800 0/0:49,0:49:99:0,120,1451 0/0:49,0:49:99:0,118,1412 0/0:50,0:50:99:0,111,1345 0/0:52,0:52:99:0,120,1800 0/1:22,25:47:99:530,0,426 0/1:21,28:49:99:614,0,414 0/0:50,0:50:99:0,119,1608 1/1:0,49:50:99:1351,147,0 0/1:22,27:49:99:581,0,421 0/1:24,24:48:99:518,0,502 1/1:0,49:49:99:1318,146,0 1/1:0,49:50:99:1352,147,0 NW_016690280.1 874070 . C A 49958.1 . AC=60;AF=0.037;AN=1620;BaseQRankSum=1.18;DP=38641;ExcessHet=-0.0000;FS=0.000;InbreedingCoeff=0.6597;MLEAC=62;MLEAF=0.038;MQ=59.99;MQRankSum=0.00;QD=28.74;ReadPosRankSum=0.00;SOR=4.503 GT:AD:DP:GQ:PGT:PID:PL:PS 0/0:50,0:50:99:.:.:0,113,1120:. 0/0:51,0:51:99:.:.:0,120,1404:. 0/1:29,20:49:99:.:.:427,0,681:. 1/1:0,49:49:99:.:.:1421,147,0:. 1/1:0,46:46:99:.:.:1263,137,0:. 0/1:18,25:43:99:.:.:607,0,369:. 0/0:50,0:50:99:.:.:0,120,1800:. 0/1:20,28:48:99:.:.:623,0,403:. 0/0:48,0:48:99:.:.:0,113,1422:. 0/0:45,0:45:99:.:.:0,120,1800:. 0/0:49,0:49:99:.:.:0,113,691:. 0/0:47,0:47:99:.:.:0,120,1800:. 0/0:48,0:48:99:.:.:0,120,1364:. NW_016690280.1 1628475 . C G 9474.85 . AC=16;AF=9.804e-03;AN=1632;BaseQRankSum=6.66;DP=39259;ExcessHet=0.0000;FS=0.000;InbreedingCoeff=0.5653;MLEAC=17;MLEAF=0.010;MQ=60.00;MQRankSum=0.00;QD=16.09;ReadPosRankSum=0.00;SOR=1.813 GT:AD:DP:GQ:PL 1/1:0,50:50:99:1331,150,0 0/0:50,0:50:99:0,119,1355 0/1:22,25:47:99:536,0,104 0/0:50,0:50:99:0,120,1800 0/0:50,0:50:99:0,116,1471 0/0:49,0:49:99:0,120,1800 0/0:50,0:50:99:0,120,1800 0/0:50,0:50:99:0,120,1800 0/0:50,0:50:99:0,120,1800 0/0:49,0:49:99:0,120,1249 0/1:17,31:48:38:692,0,38 0/0:50,0:50:99:0,120,1800 0/0:50,0:50:99:0,120,1800 NW_016690280.1 2207454 . A G 8225.91 . AC=15;AF=9.305e-03;AN=1612;BaseQRankSum=-5.658e+00;DP=39075;ExcessHet=0.0000;FS=0.000;InbreedingCoeff=0.5254;MLEAC=16;MLEAF=9.926e-03;MQ=60.00;MQRankSum=0.00;QD=13.83;ReadPosRankSum=0.00;SOR=1.381 GT:AD:DP:GQ:PL 0/0:50,0:50:99:0,120,1800 0/0:50,0:50:99:0,120,1800 0/1:24,27:51:99:536,0,511 1/1:0,49:49:99:1245,146,0 0/1:17,33:50:99:683,0,333 0/0:48,0:48:99:0,120,1326 1/1:0,51:51:99:1309,153,0 0/0:49,0:49:99:0,120,1800 0/0:49,0:49:99:0,120,1800 0/0:48,0:48:99:0,120,1800 0/0:50,0:50:99:0,120,1800 0/1:26,23:49:99:446,0,535 0/0:49,0:49:99:0,120,1200 NW_016690280.1 2801041 . T A 296384 . AC=428;AF=0.263;AN=1628;BaseQRankSum=3.92;DP=39951;ExcessHet=0.0000;FS=6.937;InbreedingCoeff=0.2004;MLEAC=444;MLEAF=0.273;MQ=60.00;MQRankSum=0.00;QD=17.31;ReadPosRankSum=0.00;SOR=1.936 GT:AD:DP:GQ:PGT:PID:PL:PS 0/0:53,0:53:99:.:.:0,120,1800:. 1/1:1,48:49:99:.:.:1750,124,0:. 1/1:0,49:49:99:.:.:1468,147,0:. 1/1:0,47:47:99:.:.:1378,140,0:. 1/1:0,50:50:99:.:.:1437,149,0:. 0/1:27,23:50:99:.:.:527,0,565:. 1/1:0,49:49:99:.:.:1403,147,0:. 1/1:0,49:49:99:.:.:1462,147,0:. 1/1:0,48:48:99:.:.:1502,144,0:. 0/1:27,23:50:99:.:.:532,0,612:. 0/0:48,0:48:99:.:.:0,119,1416:. 1/1:0,52:52:99:.:.:1587,156,0:. 1/1:0,51:51:99:.:.:1587,152,0:. NW_016690280.1 2944906 . G C 3975.24 . AC=7;AF=4.279e-03;AN=1636;BaseQRankSum=-3.463e+00;DP=39446;ExcessHet=0.0000;FS=0.000;InbreedingCoeff=0.6784;MLEAC=7;MLEAF=4.279e-03;MQ=60.00;MQRankSum=0.00;QD=20.49;ReadPosRankSum=0.00;SOR=3.958 GT:AD:DP:GQ:PL 0/0:45,0:45:99:0,106,1400 0/0:48,0:48:99:0,111,1345 0/0:48,0:48:99:0,118,1309 0/0:46,0:46:99:0,116,1412 0/0:49,0:49:99:0,116,1208 0/0:49,0:49:99:0,115,1162 0/0:49,0:49:99:0,111,1376 0/0:46,0:46:99:0,107,1375 1/1:1,47:48:99:1161,115,0 0/0:49,0:49:99:0,120,1800 0/1:22,24:46:99:455,0,452 1/1:0,51:51:99:1309,153,0 1/1:0,49:49:99:1212,147,0 NW_016690280.1 3046268 . G A 1539.45 . AC=3;AF=1.838e-03;AN=1632;BaseQRankSum=5.98;DP=38093;ExcessHet=3.0183;FS=0.000;InbreedingCoeff=0.5667;MLEAC=3;MLEAF=1.838e-03;MQ=60.00;MQRankSum=0.00;QD=10.47;ReadPosRankSum=0.00;SOR=0.511 GT:AD:DP:GQ:PL 0/0:48,0:48:99:0,120,1800 0/0:49,0:49:99:0,109,1373 0/0:45,0:45:99:0,102,1094 0/0:45,0:45:99:0,105,787 0/1:26,23:49:99:575,0,582 0/0:45,0:45:99:0,110,1337 0/0:48,0:48:99:0,120,1800 0/0:48,0:48:99:0,117,1431 0/1:27,22:49:99:523,0,594 0/0:49,0:49:99:0,112,1309 0/0:48,0:48:99:0,120,1800 0/1:28,21:49:99:514,0,674 0/0:48,0:48:99:0,120,1800 NW_016690282.1 1998667 . C T 4883.77 . AC=6;AF=3.722e-03;AN=1612;DP=43378;ExcessHet=0.0000;FS=0.000;InbreedingCoeff=0.6507;MLEAC=6;MLEAF=3.722e-03;MQ=60.00;QD=29.96;SOR=10.200 GT:AD:DP:GQ:PL 0/0:54,0:54:99:0,120,1800 0/0:55,0:55:99:0,120,1800 0/0:53,0:53:99:0,120,1800 0/0:51,0:51:99:0,120,1800 0/0:54,0:54:99:0,120,1800 0/0:52,0:52:99:0,120,1800 0/0:48,0:48:99:0,120,1800 0/0:50,0:50:99:0,120,1800 1/1:0,52:52:99:1635,156,0 0/0:53,0:53:99:0,120,1800 0/0:57,0:57:99:0,120,1800 1/1:0,57:57:99:1725,171,0 1/1:0,54:54:99:1668,161,0 NW_016690283.1 502569 . G A 5809.93 . AC=10;AF=6.211e-03;AN=1610;BaseQRankSum=5.45;DP=38271;ExcessHet=3.1324;FS=0.000;InbreedingCoeff=0.4895;MLEAC=11;MLEAF=6.832e-03;MQ=60.00;MQRankSum=0.00;QD=11.69;ReadPosRankSum=0.00;SOR=0.825 GT:AD:DP:GQ:PL 0/0:50,0:50:99:0,120,1800 0/0:49,0:49:99:0,120,1800 0/1:27,22:49:99:463,0,578 0/0:50,0:50:99:0,120,1800 0/1:21,27:48:99:558,0,397 0/1:25,25:50:99:544,0,517 0/0:51,0:51:99:0,120,1800 0/0:49,0:49:99:0,120,1800 0/0:49,0:49:99:0,120,1800 0/0:48,0:48:99:0,119,1253 0/0:48,0:48:99:0,120,1800 0/0:49,0:49:99:0,120,1800 0/0:50,0:50:99:0,117,874 NW_016690283.1 1208468 . T C 8375.39 . AC=15;AF=9.259e-03;AN=1620;BaseQRankSum=-6.363e+00;DP=38839;ExcessHet=0.0000;FS=0.000;InbreedingCoeff=0.5893;MLEAC=16;MLEAF=9.877e-03;MQ=60.00;MQRankSum=0.00;QD=15.48;ReadPosRankSum=0.00;SOR=1.952 GT:AD:DP:GQ:PL 1/1:1,49:50:99:1229,122,0 0/1:24,25:49:99:468,0,478 0/0:50,0:50:99:0,120,1800 1/1:0,50:50:99:1288,150,0 0/0:50,0:50:99:0,120,1800 0/1:16,31:47:99:626,0,274 0/1:30,20:50:99:346,0,654 0/0:49,0:49:99:0,120,1800 0/0:50,0:50:99:0,120,1800 1/1:0,49:49:99:1260,147,0 1/1:0,48:48:99:1233,144,0 0/0:49,0:49:99:0,120,1800 0/0:50,0:50:99:0,120,1800 NW_016690283.1 1549184 . A G 15657.5 . AC=25;AF=0.015;AN=1632;BaseQRankSum=-5.130e+00;DP=39680;ExcessHet=0.0000;FS=55.442;InbreedingCoeff=0.6273;MLEAC=26;MLEAF=0.016;MQ=60.00;MQRankSum=0.00;QD=18.27;ReadPosRankSum=-9.600e-02;SOR=10.210 GT:AD:DP:GQ:PL 0/1:22,48:70:99:970,0,755 1/1:0,48:48:99:1230,143,0 1/1:0,49:49:99:1284,147,0 0/1:34,14:48:99:225,0,806 0/1:22,26:48:99:520,0,484 1/1:0,49:49:99:1341,147,0 1/1:0,47:47:99:1261,140,0 0/0:47,0:47:99:0,117,1578 0/1:17,31:48:99:677,0,328 0/1:31,23:54:99:452,0,771 1/1:2,50:52:66:1268,66,0 0/1:24,25:49:99:521,0,540 0/0:49,0:49:99:0,120,1800 NW_016690284.1 2102191 . A G 1832.81 . 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AC=719;AF=0.451;AN=1596;BaseQRankSum=-4.767e+00;DP=37715;ExcessHet=0.0000;FS=0.000;InbreedingCoeff=0.2211;MLEAC=764;MLEAF=0.479;MQ=59.99;MQRankSum=0.00;QD=21.60;ReadPosRankSum=0.00;SOR=0.645 GT:AD:DP:GQ:PGT:PID:PL:PS 0|1:23,21:44:99:0|1:237888_T_C:813,0,903:237888 0|1:21,27:48:99:0|1:237884_C_T:1064,0,657:237884 0/0:50,0:50:99:.:.:0,110,1408:. 0|1:22,23:45:99:0|1:237888_T_C:900,0,855:237888 1|1:0,44:44:99:1|1:237888_T_C:1969,132,0:237888 0/1:26,20:46:99:.:.:443,0,675:. 0/1:24,25:49:99:.:.:570,0,564:. 0/0:48,0:48:99:.:.:0,105,1274:. 1/1:0,45:45:99:.:.:1344,135,0:. 0/1:26,24:50:99:.:.:591,0,717:. 0/1:20,21:41:99:.:.:508,0,531:. 0/0:45,0:45:99:.:.:0,115,1238:. 0/1:26,22:48:99:.:.:512,0,685:. NW_016690285.1 465419 . C T 287143 . 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AC=6;AF=3.676e-03;AN=1632;BaseQRankSum=6.08;DP=39541;ExcessHet=3.0504;FS=0.000;InbreedingCoeff=0.5237;MLEAC=6;MLEAF=3.676e-03;MQ=60.00;MQRankSum=0.00;QD=8.64;ReadPosRankSum=0.00;SOR=0.555 GT:AD:DP:GQ:PL 0/0:49,0:49:99:0,120,1800 0/1:28,21:49:99:449,0,519 0/1:24,26:50:99:598,0,429 0/1:32,17:49:99:334,0,647 0/0:48,0:48:99:0,119,1132 0/0:48,0:48:99:0,120,1800 0/0:49,0:49:99:0,120,1800 0/0:49,0:49:99:0,120,1800 0/0:47,0:47:99:0,110,881 0/0:48,0:48:99:0,117,1053 0/0:48,0:48:99:0,120,1800 0/0:49,0:49:99:0,119,825 0/0:50,0:50:99:0,120,1800 NW_016690286.1 655320 . T C 5717.21 . AC=7;AF=4.332e-03;AN=1616;BaseQRankSum=-6.327e+00;DP=35274;ExcessHet=0.0001;FS=25.309;InbreedingCoeff=0.5992;MLEAC=7;MLEAF=4.332e-03;MQ=60.00;MQRankSum=0.00;QD=24.97;ReadPosRankSum=0.00;SOR=3.460 GT:AD:DP:GQ:PGT:PID:PL:PS 0/0:50,0:50:99:.:.:0,119,1438:. 0/1:28,22:50:99:.:.:460,0,679:. 1|1:0,50:50:99:1|1:655320_T_C:2238,151,0:655320 0/0:49,0:49:99:.:.:0,120,1800:. 0/0:50,0:50:99:.:.:0,120,1800:. 0/0:49,0:49:99:.:.:0,120,1800:. 0/0:50,0:50:99:.:.:0,120,1800:. 0/0:47,0:47:99:.:.:0,117,1113:. 0/0:49,0:49:99:.:.:0,120,1800:. 0/0:49,0:49:99:.:.:0,119,1250:. 0/0:49,0:49:99:.:.:0,120,1800:. 0/0:49,0:49:99:.:.:0,118,1366:. 0/0:50,0:50:99:.:.:0,120,1800:. NW_016690286.1 731213 . A T 15313.1 . AC=22;AF=0.014;AN=1624;BaseQRankSum=-5.317e+00;DP=39401;ExcessHet=0.0176;FS=0.000;InbreedingCoeff=0.4152;MLEAC=23;MLEAF=0.014;MQ=60.00;MQRankSum=0.00;QD=14.22;ReadPosRankSum=0.00;SOR=0.923 GT:AD:DP:GQ:PL 0/0:48,0:48:99:0,112,1289 0/0:49,0:49:99:0,120,1800 0/0:48,0:48:99:0,120,1800 1/1:1,49:50:99:1458,119,0 0/0:47,0:47:99:0,119,1352 0/1:48,49:97:99:1209,0,1200 0/0:99,0:99:99:0,120,1800 0/0:50,0:50:99:0,120,1800 0/1:50,50:100:99:1216,0,1302 0/0:47,0:47:99:0,120,1800 0/0:52,0:52:99:0,120,1800 0/0:99,0:99:99:0,120,1800 0/0:97,0:97:99:0,120,1800 NW_016690286.1 1674711 . A G 31208.2 . AC=37;AF=0.023;AN=1612;BaseQRankSum=-5.167e+00;DP=39053;ExcessHet=0.0000;FS=5.208;InbreedingCoeff=0.5814;MLEAC=39;MLEAF=0.024;MQ=60.00;MQRankSum=0.00;QD=20.96;ReadPosRankSum=-4.898e+00;SOR=1.735 GT:AD:DP:GQ:PGT:PID:PL:PS 0|1:18,26:44:99:0|1:1674703_A_G:1019,0,648:1674703 0/1:16,33:49:99:.:.:767,0,326:. 1/1:0,47:47:99:.:.:1727,141,0:. 0/1:26,24:50:99:.:.:468,0,577:. 1/1:1,47:48:99:.:.:1191,114,0:. 0/1:23,28:51:99:.:.:577,0,488:. 0/1:22,25:47:99:.:.:519,0,475:. 1/1:0,48:48:99:.:.:1321,144,0:. 1/1:0,45:45:99:.:.:1139,134,0:. 1/1:1,47:48:99:.:.:1234,116,0:. 1/1:0,48:48:99:.:.:1255,144,0:. 0/1:24,24:48:99:.:.:517,0,560:. 0/0:42,0:42:99:.:.:0,110,1181:. NW_016690286.1 2901748 . C T 24546 . 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AC=20;AF=0.012;AN=1608;BaseQRankSum=6.72;DP=39394;ExcessHet=0.0000;FS=0.000;InbreedingCoeff=0.6006;MLEAC=21;MLEAF=0.013;MQ=60.00;MQRankSum=0.00;QD=18.06;ReadPosRankSum=0.00;SOR=1.779 GT:AD:DP:GQ:PL 0/0:49,0:49:99:0,120,1800 0/1:28,20:48:99:448,0,601 1/1:0,49:49:99:1450,147,0 0/0:51,0:51:0:0,0,113 0/1:29,19:48:99:423,0,630 1/1:0,51:51:99:1417,153,0 0/0:50,0:50:99:0,120,1800 0/1:24,26:50:99:624,0,495 0/1:24,23:47:99:566,0,548 0/0:49,0:49:99:0,120,1800 0/1:28,21:49:99:478,0,630 0/0:49,0:49:99:0,120,1036 0/0:49,0:49:99:0,120,1800 NW_016690289.1 839981 . T C 32733.4 . AC=57;AF=0.035;AN=1624;BaseQRankSum=-6.403e+00;DP=39224;ExcessHet=0.0000;FS=3.090;InbreedingCoeff=0.4776;MLEAC=59;MLEAF=0.036;MQ=60.00;MQRankSum=0.00;QD=14.26;ReadPosRankSum=0.00;SOR=1.474 GT:AD:DP:GQ:PGT:PID:PL:PS 0/0:49,0:49:99:.:.:0,115,1386:. 0/0:48,0:48:99:.:.:0,120,1800:. 0/1:25,24:49:99:.:.:522,0,643:. 0/0:47,0:47:99:.:.:0,120,1800:. 0/0:49,0:49:99:.:.:0,120,1800:. 0/1:28,19:47:99:.:.:380,0,718:. 0/1:26,23:49:99:.:.:492,0,652:. 0/0:49,0:49:99:.:.:0,120,1422:. 1|1:0,49:49:99:1|1:839976_T_C:1876,147,0:839976 0/0:50,0:50:99:.:.:0,120,1800:. 0/0:48,0:48:99:.:.:0,118,1488:. 1/1:0,50:50:99:.:.:1412,150,0:. 0/0:50,0:50:99:.:.:0,120,1800:. NW_016690289.1 1842153 . C T 43972.5 . AC=36;AF=0.022;AN=1616;BaseQRankSum=8.97;DP=49779;ExcessHet=0.0009;FS=2.925;InbreedingCoeff=0.4089;MLEAC=38;MLEAF=0.024;MQ=60.00;MQRankSum=0.00;QD=11.43;ReadPosRankSum=2.49;SOR=0.428 GT:AD:DP:GQ:PGT:PID:PL:PS 0/0:175,0:175:99:.:.:0,120,1800:. 0/0:118,0:118:99:.:.:0,120,1800:. 0/1:56,56:112:99:.:.:1359,0,1841:. 0/0:107,0:107:99:.:.:0,120,1800:. 0/0:105,0:105:99:.:.:0,120,1800:. 0/0:61,0:61:99:.:.:0,120,1800:. 0/0:84,0:84:99:.:.:0,120,1800:. 0/1:42,24:67:99:.:.:881,0,1691:. 0/1:69,42:111:99:.:.:989,0,355:. 0|1:120,53:173:99:0|1:1842153_C_T:1864,0,4879:1842153 0/0:60,0:60:99:.:.:0,114,1289:. 0/0:57,0:57:99:.:.:0,99,1169:. 0/0:115,0:115:99:.:.:0,120,1800:. NW_016690289.1 1967733 . C T 11600.1 . AC=18;AF=0.011;AN=1632;BaseQRankSum=6.72;DP=40133;ExcessHet=0.2085;FS=0.000;InbreedingCoeff=0.4179;MLEAC=19;MLEAF=0.012;MQ=60.00;MQRankSum=0.00;QD=13.83;ReadPosRankSum=0.00;SOR=0.843 GT:AD:DP:GQ:PGT:PID:PL:PS 0/0:60,0:60:99:.:.:0,120,1800:. 1/1:0,52:52:99:.:.:1599,156,0:. 0/1:23,25:48:85:.:.:650,0,85:. 0/0:48,0:48:99:.:.:0,108,1449:. 0/0:50,0:50:99:.:.:0,120,1800:. 0/1:19,31:50:39:.:.:807,0,39:. 0/0:53,0:53:99:.:.:0,120,1800:. 0/0:49,0:49:99:.:.:0,120,1800:. 0/0:50,0:50:99:.:.:0,116,1408:. 0/0:49,0:49:99:.:.:0,120,1800:. 0/0:48,0:48:99:.:.:0,116,1135:. 0/0:49,0:49:99:.:.:0,120,1423:. 0/0:48,0:48:99:.:.:0,101,992:. NW_016690289.1 2474864 . T C 1241.45 . AC=3;AF=1.838e-03;AN=1632;BaseQRankSum=-6.215e+00;DP=39240;ExcessHet=3.0183;FS=0.000;InbreedingCoeff=0.5643;MLEAC=3;MLEAF=1.838e-03;MQ=60.00;MQRankSum=0.00;QD=8.33;ReadPosRankSum=0.00;SOR=0.762 GT:AD:DP:GQ:PL 0/0:48,0:48:99:0,105,1226 0/0:52,0:52:99:0,120,1800 0/0:49,0:49:99:0,120,1800 0/0:48,0:48:99:0,120,1800 0/0:49,0:49:99:0,116,1341 0/1:25,22:47:99:368,0,482 0/1:25,25:50:99:406,0,476 0/0:49,0:49:99:0,120,1800 0/0:51,0:51:99:0,120,1800 0/0:43,0:43:99:0,110,930 0/1:22,30:52:99:540,0,391 0/0:52,0:52:99:0,108,1474 0/0:49,0:49:99:0,115,1244 NW_016690289.1 2664081 . A G 121287 . AC=201;AF=0.125;AN=1610;BaseQRankSum=-5.997e+00;DP=33629;ExcessHet=0.0000;FS=5.882;InbreedingCoeff=0.4183;MLEAC=212;MLEAF=0.132;MQ=60.00;MQRankSum=0.00;QD=17.98;ReadPosRankSum=0.00;SOR=1.721 GT:AD:DP:GQ:PGT:PID:PL:PS 0/1:26,23:49:99:.:.:491,0,650:. 0/0:50,0:50:99:.:.:0,120,1800:. 0/1:21,28:49:99:.:.:621,0,497:. 1/1:0,47:47:99:.:.:1253,141,0:. 1/1:0,50:50:99:.:.:1333,150,0:. 1|1:0,31:31:93:1|1:2664081_A_G:1135,93,0:2664081 0|1:21,28:49:99:0|1:2664081_A_G:630,0,481:2664081 1/1:0,48:48:99:.:.:1419,144,0:. 0/1:27,23:50:99:.:.:509,0,708:. 1/1:0,48:48:99:.:.:1466,144,0:. 1/1:2,48:50:89:.:.:1318,89,0:. 0/1:24,26:50:99:.:.:616,0,607:. 0/1:19,31:50:99:.:.:766,0,452:. NW_016690289.1 3058251 . C T 10922.3 . AC=11;AF=6.748e-03;AN=1630;BaseQRankSum=7.37;DP=68961;ExcessHet=0.0000;FS=0.000;InbreedingCoeff=0.5955;MLEAC=11;MLEAF=6.748e-03;MQ=60.00;MQRankSum=0.00;QD=15.67;ReadPosRankSum=0.649;SOR=1.367 GT:AD:DP:GQ:PL 0/0:107,0:107:99:0,120,1800 0/1:60,65:125:99:1459,0,1045 1/1:0,75:75:99:2144,224,0 0/1:50,33:83:99:689,0,987 0/0:74,0:74:99:0,120,1800 0/0:70,0:70:99:0,120,1800 0/0:71,0:71:99:0,120,1800 0/0:107,0:107:99:0,120,1800 0/0:71,0:71:99:0,120,1800 0/0:117,0:117:99:0,120,1800 0/1:32,33:65:99:782,0,594 0/0:73,0:73:99:0,120,1800 0/0:65,0:65:99:0,120,1800 NW_016690290.1 2170818 . T C 187162 . AC=283;AF=0.173;AN=1634;BaseQRankSum=-6.034e+00;DP=51038;ExcessHet=0.0000;FS=5.476;InbreedingCoeff=0.1996;MLEAC=293;MLEAF=0.179;MQ=60.00;MQRankSum=0.00;QD=15.23;ReadPosRankSum=0.00;SOR=1.687 GT:AD:DP:GQ:PGT:PID:PL:PS 0/1:20,28:48:99:.:.:616,0,489:. 0/1:23,28:51:99:.:.:649,0,535:. 0/1:19,31:50:99:.:.:726,0,444:. 0/1:29,25:54:99:.:.:534,0,709:. 0/0:47,0:47:99:.:.:0,108,1400:. 0/1:23,26:49:99:.:.:583,0,574:. 1/1:1,50:51:99:.:.:1370,121,0:. 1/1:1,49:50:99:.:.:1725,120,0:. 0|1:25,24:49:99:0|1:2170812_C_T:933,0,975:2170812 1|1:0,49:49:99:1|1:2170811_C_T:2205,147,0:2170811 1/1:0,51:51:99:.:.:1425,153,0:. 1/1:0,51:51:99:.:.:1432,153,0:. 0/1:22,27:49:99:.:.:647,0,550:. NW_016690291.1 226066 . G A 7503.63 . AC=9;AF=5.535e-03;AN=1626;BaseQRankSum=6.29;DP=37107;ExcessHet=0.0484;FS=29.601;InbreedingCoeff=0.5338;MLEAC=9;MLEAF=5.535e-03;MQ=60.00;MQRankSum=0.00;QD=19.80;ReadPosRankSum=0.00;SOR=5.081 GT:AD:DP:GQ:PGT:PID:PL:PS 0/0:46,0:46:99:.:.:0,120,1306:. 0/0:47,0:47:99:.:.:0,108,1458:. 0/0:47,0:47:99:.:.:0,113,1267:. 0/0:44,0:44:99:.:.:0,120,1800:. 0/0:46,0:46:99:.:.:0,120,959:. 0/0:47,0:47:99:.:.:0,105,1093:. 0/0:47,0:47:99:.:.:0,120,1800:. 1|1:0,45:45:99:1|1:226066_G_A:2025,135,0:226066 0/0:47,0:47:99:.:.:0,113,1224:. 0/0:48,0:48:99:.:.:0,107,1217:. 0/0:47,0:47:99:.:.:0,102,1216:. 0|1:31,19:50:99:0|1:226066_G_A:669,0,1244:226066 0|1:22,25:47:99:0|1:226066_G_A:887,0,840:226066 NW_016690291.1 430705 . T G 1716.4 . AC=3;AF=1.834e-03;AN=1636;BaseQRankSum=-6.428e+00;DP=39226;ExcessHet=0.0040;FS=0.000;InbreedingCoeff=0.6152;MLEAC=3;MLEAF=1.834e-03;MQ=60.00;MQRankSum=0.00;QD=16.99;ReadPosRankSum=-1.064e+00;SOR=2.016 GT:AD:DP:GQ:PL 0/0:50,0:50:99:0,120,1800 0/0:50,0:50:99:0,118,1366 0/0:50,0:50:99:0,120,1800 0/0:49,0:49:99:0,120,1800 0/0:49,0:49:99:0,120,1800 0/0:50,0:50:99:0,120,1800 0/0:50,0:50:99:0,120,1800 0/0:50,0:50:99:0,120,1800 0/0:49,0:49:99:0,120,1800 0/0:48,0:48:99:0,120,1800 0/0:48,0:48:99:0,120,1800 0/1:28,23:51:99:461,0,623 1/1:0,50:50:99:1334,150,0 NW_016690291.1 1811899 . A G 79975.6 . AC=82;AF=0.051;AN=1622;BaseQRankSum=-6.188e+00;DP=39017;ExcessHet=0.0000;FS=2.516;InbreedingCoeff=0.4092;MLEAC=86;MLEAF=0.053;MQ=59.99;MQRankSum=0.00;QD=24.14;ReadPosRankSum=0.00;SOR=1.762 GT:AD:DP:GQ:PGT:PID:PL:PS 0/0:51,0:51:99:.:.:0,120,1800:. 0/0:50,0:50:99:.:.:0,110,1278:. 0/0:51,0:51:99:.:.:0,109,1381:. 0/0:50,0:50:99:.:.:0,120,1800:. 0/1:24,26:50:99:.:.:572,0,602:. 0/0:52,0:52:99:.:.:0,120,1800:. 0/0:49,0:49:99:.:.:0,119,1498:. 0/0:37,0:37:99:.:.:0,99,818:. 0/0:49,0:49:99:.:.:0,112,1412:. 1/1:0,49:50:99:.:.:1295,147,0:. 0/0:50,0:50:99:.:.:0,120,1800:. 0|1:24,25:49:99:0|1:1811891_A_T:950,0,921:1811891 0/0:49,0:49:99:.:.:0,117,1410:. NW_016690291.1 2496745 . T C 39450 . AC=60;AF=0.037;AN=1628;BaseQRankSum=-6.065e+00;DP=41436;ExcessHet=0.0508;FS=0.000;InbreedingCoeff=0.2644;MLEAC=62;MLEAF=0.038;MQ=59.99;MQRankSum=0.00;QD=13.64;ReadPosRankSum=0.00;SOR=1.086 GT:AD:DP:GQ:PGT:PID:PL:PS 0/1:28,26:54:99:.:.:533,0,642:. 0/0:51,0:51:99:.:.:0,120,1800:. 0/0:50,0:50:99:.:.:0,120,1800:. 0/1:26,18:44:99:.:.:365,0,690:. 0/0:53,0:53:99:.:.:0,120,1800:. 0/0:51,0:51:99:.:.:0,113,1364:. 0/0:50,0:50:99:.:.:0,120,1800:. 0/0:49,0:49:99:.:.:0,120,1800:. 0/0:49,0:49:99:.:.:0,101,1297:. 0|1:21,33:54:99:0|1:2496745_T_C:766,0,476:2496745 0/0:50,0:50:99:.:.:0,114,1355:. 0/0:50,0:50:99:.:.:0,120,1800:. 0/0:51,0:51:99:.:.:0,120,1800:. NW_016690291.1 2857475 . G A 707892 . AC=1036;AF=0.666;AN=1556;BaseQRankSum=5.46;DP=38309;ExcessHet=0.0000;FS=2.697;InbreedingCoeff=0.6884;MLEAC=1129;MLEAF=0.726;MQ=59.99;MQRankSum=0.00;QD=25.38;ReadPosRankSum=0.00;SOR=1.498 GT:AD:DP:GQ:PGT:PID:PL:PS 0/1:17,30:47:28:.:.:739,0,28:. 0/0:50,0:50:99:.:.:0,120,1800:. 1/1:5,40:45:85:.:.:1122,85,0:. 0/0:26,0:26:76:.:.:0,76,452:. 0/0:49,0:49:99:.:.:0,120,1800:. 1/1:1,43:44:99:.:.:1243,122,0:. 1/1:0,49:49:99:.:.:1315,146,0:. 1/1:0,45:45:99:.:.:1323,135,0:. 0/0:47,0:47:99:.:.:0,120,1800:. 0/0:50,0:50:99:.:.:0,120,1800:. 0/0:49,0:49:99:.:.:0,120,1800:. 0/0:51,0:51:99:.:.:0,120,1800:. 1/1:0,46:46:99:.:.:1295,138,0:. NW_016690292.1 16197 . T C 87738.3 . AC=141;AF=0.086;AN=1634;BaseQRankSum=-6.288e+00;DP=40073;ExcessHet=0.0000;FS=0.000;InbreedingCoeff=0.2830;MLEAC=146;MLEAF=0.089;MQ=60.00;MQRankSum=0.00;QD=14.25;ReadPosRankSum=0.00;SOR=0.563 GT:AD:DP:GQ:PGT:PID:PL:PS 0/0:66,0:66:99:.:.:0,120,1800:. 0/1:26,25:51:99:.:.:515,0,591:. 0/1:30,18:48:99:.:.:336,0,723:. 0/0:51,0:51:99:.:.:0,109,1407:. 0/0:49,0:49:99:.:.:0,120,1565:. 0/0:48,0:48:99:.:.:0,115,1451:. 0/0:48,0:48:99:.:.:0,120,1800:. 0/0:46,0:46:99:.:.:0,120,1800:. 0/1:23,27:50:99:.:.:580,0,526:. 1/1:0,52:52:99:.:.:1387,156,0:. 0/0:50,0:50:99:.:.:0,120,1800:. 1|1:0,50:50:99:1|1:16197_T_C:2212,151,0:16197 0/1:26,22:48:99:.:.:442,0,619:. NW_016690293.1 303492 . C T 3863.08 . AC=6;AF=3.681e-03;AN=1630;BaseQRankSum=5.40;DP=37925;ExcessHet=0.0200;FS=0.000;InbreedingCoeff=0.5628;MLEAC=6;MLEAF=3.681e-03;MQ=60.00;MQRankSum=0.00;QD=15.77;ReadPosRankSum=-6.250e-01;SOR=1.245 GT:AD:DP:GQ:PL 0/1:23,25:48:99:591,0,514 0/0:43,0:43:99:0,105,1298 0/0:45,0:45:99:0,109,1402 0/0:47,0:47:99:0,102,1003 0/0:47,0:47:99:0,120,1800 0/0:48,0:48:99:0,120,1800 1/1:0,50:50:99:1455,149,0 0/0:48,0:48:99:0,120,1800 0/0:47,0:47:99:0,104,1237 0/0:49,0:49:99:0,120,1800 0/0:45,0:45:99:0,120,1800 0/0:50,0:50:99:0,120,1800 0/0:50,0:50:99:0,118,1331 NW_016690293.1 1036291 . C T 3773.82 . AC=8;AF=4.914e-03;AN=1628;BaseQRankSum=6.28;DP=39154;ExcessHet=3.0853;FS=0.000;InbreedingCoeff=0.4914;MLEAC=8;MLEAF=4.914e-03;MQ=60.00;MQRankSum=0.00;QD=9.83;ReadPosRankSum=0.00;SOR=0.451 GT:AD:DP:GQ:PL 0/0:50,0:50:99:0,120,1800 0/1:24,21:45:99:488,0,517 0/0:49,0:49:99:0,116,1473 0/0:46,0:46:99:0,108,1239 0/0:48,0:48:99:0,120,1800 0/1:30,17:47:99:379,0,689 0/0:50,0:50:99:0,120,1800 0/0:50,0:50:99:0,120,1800 0/0:51,0:51:99:0,120,1800 0/1:26,23:49:99:558,0,1023 0/1:24,25:49:99:647,0,933 0/1:32,17:49:99:385,0,1293 0/0:50,0:50:99:0,120,1511 NW_016690293.1 2073915 . C T 10583.1 . AC=17;AF=0.011;AN=1604;BaseQRankSum=6.20;DP=35455;ExcessHet=0.0000;FS=0.000;InbreedingCoeff=0.6081;MLEAC=18;MLEAF=0.011;MQ=60.00;MQRankSum=0.00;QD=18.28;ReadPosRankSum=0.00;SOR=1.996 GT:AD:DP:GQ:PL 1/1:0,50:50:99:1373,149,0 0/0:50,0:50:99:0,109,1051 0/0:48,0:48:99:0,107,1188 0/1:25,20:45:99:442,0,537 0/0:47,0:47:99:0,120,1286 0/0:48,0:48:99:0,120,1800 0/1:18,31:49:99:692,0,286 0/0:48,0:48:99:0,119,1366 1/1:0,46:46:99:1344,138,0 0/1:27,20:47:99:427,0,567 0/1:26,25:51:99:556,0,496 0/1:23,28:51:99:673,0,459 0/1:23,26:49:99:621,0,453 NW_016690293.1 2238636 . G A 9971.38 . AC=17;AF=0.010;AN=1630;BaseQRankSum=5.93;DP=39204;ExcessHet=0.0001;FS=3.571;InbreedingCoeff=0.4861;MLEAC=17;MLEAF=0.010;MQ=60.00;MQRankSum=0.00;QD=15.34;ReadPosRankSum=0.00;SOR=2.754 GT:AD:DP:GQ:PL 1/1:1,49:50:99:1432,122,0 0/0:48,0:48:99:0,116,1291 0/0:50,0:50:99:0,120,1800 0/0:49,0:49:99:0,103,1283 0/0:51,0:51:99:0,120,1800 0/0:50,0:50:99:0,120,1800 0/0:50,0:50:99:0,120,1800 0/1:35,15:50:99:296,0,767 0/1:27,23:50:99:527,0,564 0/1:29,21:50:99:470,0,616 0/0:48,0:48:99:0,119,1082 0/0:48,0:48:99:0,120,1800 0/0:49,0:49:99:0,118,1178 NW_016690294.1 1570149 . T C 135512 . AC=161;AF=0.099;AN=1626;BaseQRankSum=-6.507e+00;DP=42078;ExcessHet=0.0003;FS=0.000;InbreedingCoeff=0.2058;MLEAC=168;MLEAF=0.103;MQ=59.99;MQRankSum=0.00;QD=14.37;ReadPosRankSum=0.00;SOR=1.576 GT:AD:DP:GQ:PGT:PID:PL:PS 0/0:46,0:46:99:.:.:0,120,1800:. 0/0:51,0:51:99:.:.:0,104,1317:. 0/0:47,0:47:99:.:.:0,120,1800:. 0/0:48,0:48:99:.:.:0,120,1800:. 0/0:56,0:56:99:.:.:0,120,1800:. 0/0:48,0:48:99:.:.:0,103,872:. 0/0:50,0:50:99:.:.:0,103,1192:. 0/1:36,31:67:99:.:.:684,0,944:. 0/1:33,27:60:99:.:.:598,0,1305:. 0/0:49,0:49:99:.:.:0,120,1800:. 0/0:65,0:65:99:.:.:0,120,1800:. 0/1:29,32:61:99:.:.:721,0,1110:. 0/1:22,31:53:99:.:.:755,0,831:. NW_016690294.1 1719611 . T G 28103.2 . 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AC=10;AF=6.112e-03;AN=1636;BaseQRankSum=-5.394e+00;DP=38451;ExcessHet=0.0000;FS=0.000;InbreedingCoeff=0.5830;MLEAC=9;MLEAF=5.501e-03;MQ=60.00;MQRankSum=0.00;QD=14.06;ReadPosRankSum=0.00;SOR=1.694 GT:AD:DP:GQ:PL 0/0:45,0:45:99:0,120,1800 0/0:53,0:53:99:0,99,1130 0/0:50,0:50:99:0,105,1115 0/1:18,29:47:99:564,0,355 0/0:54,0:54:99:0,120,1800 0/1:25,19:44:99:357,0,506 0/0:47,0:47:99:0,106,1163 0/1:25,23:48:99:409,0,493 0/0:47,0:47:99:0,120,1800 0/0:55,0:55:99:0,110,1477 0/0:45,0:45:99:0,105,1221 1/1:0,51:51:99:1276,152,0 1/1:0,48:48:99:1171,143,0 NW_016690295.1 1600108 . G A 48029.7 . 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AC=12;AF=7.380e-03;AN=1626;BaseQRankSum=-4.938e+00;DP=40963;ExcessHet=0.0000;FS=0.000;InbreedingCoeff=0.5991;MLEAC=12;MLEAF=7.380e-03;MQ=60.00;MQRankSum=0.00;QD=21.92;ReadPosRankSum=0.00;SOR=1.568 GT:AD:DP:GQ:PGT:PID:PL:PS 0/0:52,0:52:99:.:.:0,120,1800:. 0/0:55,0:55:99:.:.:0,120,1800:. 0/1:25,26:51:99:.:.:586,0,566:. 0/0:52,0:52:99:.:.:0,120,1800:. 0/0:53,0:53:99:.:.:0,120,1800:. 0|1:23,27:50:99:0|1:2340063_G_A:623,0,530:2340063 0|1:28,24:52:99:0|1:2340063_G_A:528,0,663:2340063 0|1:21,28:49:99:0|1:2340063_G_A:684,0,469:2340063 0/0:50,0:50:99:.:.:0,120,1800:. 1|1:0,49:49:99:1|1:2340063_G_A:2197,147,0:2340063 1|1:0,52:52:99:1|1:2340063_G_A:2323,157,0:2340063 0/0:53,0:53:99:.:.:0,120,1800:. 0/0:53,0:53:99:.:.:0,120,1800:. NW_016690298.1 2628975 . C T 33838.1 . AC=34;AF=0.021;AN=1624;BaseQRankSum=6.04;DP=39661;ExcessHet=-0.0000;FS=0.000;InbreedingCoeff=0.6235;MLEAC=35;MLEAF=0.022;MQ=60.00;MQRankSum=0.00;QD=16.60;ReadPosRankSum=0.344;SOR=0.688 GT:AD:DP:GQ:PGT:PID:PL:PS 0/0:49,0:49:99:.:.:0,120,1800:. 0/1:61,39:100:99:.:.:855,0,837:. 0/1:46,52:98:99:.:.:1222,0,542:. 0/0:49,0:49:99:.:.:0,120,1800:. 0/0:49,0:49:99:.:.:0,118,1294:. 0/1:52,44:96:99:.:.:1060,0,724:. 0/0:49,0:49:99:.:.:0,108,1243:. 0/0:50,0:50:99:.:.:0,120,1800:. 0/0:48,0:48:99:.:.:0,120,1800:. 0/0:49,0:49:99:.:.:0,116,1395:. 0/0:50,0:50:99:.:.:0,116,1212:. 0/0:50,0:50:99:.:.:0,120,1800:. 0/0:47,0:47:99:.:.:0,116,1345:. NW_016690299.1 408553 . C T 4486.61 . AC=7;AF=4.359e-03;AN=1606;BaseQRankSum=6.49;DP=38535;ExcessHet=3.0674;FS=0.000;InbreedingCoeff=0.5219;MLEAC=7;MLEAF=4.359e-03;MQ=60.00;MQRankSum=0.00;QD=13.12;ReadPosRankSum=0.00;SOR=0.954 GT:AD:DP:GQ:PL 0/0:47,0:47:99:0,113,1250 0/0:50,0:50:99:0,120,1800 0/0:49,0:49:99:0,117,1463 0/1:20,30:50:99:741,0,385 0/0:49,0:49:99:0,115,708 0/0:47,0:47:99:0,119,1385 0/0:49,0:49:99:0,120,1800 0/1:21,29:50:99:793,0,450 0/0:49,0:49:99:0,120,1800 0/0:49,0:49:99:0,119,1471 0/1:26,21:47:99:515,0,632 0/0:49,0:49:99:0,116,759 0/0:48,0:48:99:0,115,1470 NW_016690299.1 1738939 . A G 335314 . 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AC=7;AF=4.332e-03;AN=1616;BaseQRankSum=-3.992e+00;DP=37712;ExcessHet=0.0001;FS=0.000;InbreedingCoeff=0.5644;MLEAC=7;MLEAF=4.332e-03;MQ=60.00;MQRankSum=0.00;QD=18.23;ReadPosRankSum=0.00;SOR=1.961 GT:AD:DP:GQ:PL 1/1:0,47:47:99:1312,139,0 0/0:49,0:49:99:0,120,1800 0/0:45,0:45:99:0,114,1059 0/0:47,0:47:99:0,102,1218 0/1:17,30:47:99:741,0,369 0/0:47,0:47:99:0,120,1292 0/0:48,0:48:99:0,120,1800 0/0:46,0:46:99:0,113,1240 0/0:48,0:48:99:0,107,1207 0/0:50,0:50:99:0,115,1389 0/0:49,0:49:99:0,110,1302 0/0:48,0:48:99:0,116,1263 0/0:48,0:48:99:0,118,1232 NW_016690306.1 1821342 . G C 59812.8 . AC=80;AF=0.049;AN=1632;BaseQRankSum=0.996;DP=39650;ExcessHet=0.0000;FS=8.686;InbreedingCoeff=0.7627;MLEAC=82;MLEAF=0.050;MQ=60.00;MQRankSum=0.00;QD=23.50;ReadPosRankSum=0.00;SOR=0.001 GT:AD:DP:GQ:PL 1/1:0,49:49:99:1403,147,0 1/1:1,49:50:99:1237,123,0 1/1:0,49:49:99:1357,147,0 0/1:22,26:48:99:525,0,420 0/1:21,28:49:99:628,0,435 1/1:0,50:50:99:1294,150,0 0/0:50,0:50:99:0,120,1800 0/0:48,0:48:99:0,118,1074 0/1:25,25:50:99:562,0,565 0/1:21,29:50:99:652,0,394 1/1:0,48:48:99:1266,144,0 0/1:22,28:50:99:653,0,477 0/1:27,22:49:99:463,0,599 NW_016690307.1 552557 . G C 102565 . AC=108;AF=0.070;AN=1552;BaseQRankSum=-5.793e+00;DP=40686;ExcessHet=0.0000;FS=1.647;InbreedingCoeff=0.3312;MLEAC=128;MLEAF=0.082;MQ=59.99;MQRankSum=0.00;QD=21.70;ReadPosRankSum=-4.140e-01;SOR=1.055 GT:AD:DP:GQ:PGT:PID:PL:PS 1/1:1,50:51:99:.:.:1285,142,0:. 1/1:0,53:53:99:.:.:1407,159,0:. 1/1:0,50:50:99:.:.:1375,150,0:. 0/0:50,0:50:99:.:.:0,120,1800:. 1/1:0,53:53:99:.:.:1381,158,0:. 0/1:26,26:52:99:.:.:588,0,612:. 0/0:50,0:50:99:.:.:0,120,1800:. 0/0:50,0:50:99:.:.:0,120,1800:. 1/1:0,50:50:99:.:.:1298,149,0:. 0/0:50,0:50:99:.:.:0,120,1800:. 0/0:50,0:50:0:.:.:0,0,74:. 0/0:52,0:52:99:.:.:0,120,1800:. 1/1:0,51:51:99:.:.:1349,153,0:. NW_016690307.1 1565226 . A G 97316.4 . 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AC=1067;AF=0.680;AN=1568;BaseQRankSum=6.30;DP=39354;ExcessHet=-0.0000;FS=2.934;InbreedingCoeff=0.3953;MLEAC=1149;MLEAF=0.733;MQ=60.00;MQRankSum=0.00;QD=25.30;ReadPosRankSum=0.00;SOR=1.660 GT:AD:DP:GQ:PGT:PID:PL:PS 0/1:32,17:49:99:.:.:319,0,597:. 0|1:27,20:47:99:0|1:1756013_C_T:708,0,1068:1756013 0/0:49,0:49:99:.:.:0,120,1800:. 0/0:45,0:45:99:.:.:0,120,1800:. 0/1:24,25:49:99:.:.:550,0,421:. 0|1:25,23:48:99:0|1:1756013_C_T:882,0,949:1756013 0/0:49,0:49:99:.:.:0,118,1093:. 0/0:45,0:45:89:.:.:0,89,931:. 0/0:49,0:49:99:.:.:0,120,1800:. 1/1:0,51:51:99:.:.:1403,153,0:. 0/0:49,0:49:99:.:.:0,120,1800:. 0/0:48,0:48:99:.:.:0,120,1800:. 0/0:46,0:46:99:.:.:0,120,1800:. NW_016690308.1 720618 . G A 2721.31 . 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AC=121;AF=0.074;AN=1630;BaseQRankSum=1.90;DP=39185;ExcessHet=0.0000;FS=0.000;InbreedingCoeff=0.3995;MLEAC=125;MLEAF=0.077;MQ=60.00;MQRankSum=0.00;QD=17.29;ReadPosRankSum=0.00;SOR=1.081 GT:AD:DP:GQ:PGT:PID:PL:PS 0/1:30,20:50:99:.:.:428,0,696:. 0/1:23,25:48:99:.:.:572,0,540:. 0/1:22,25:47:99:.:.:598,0,489:. 0/0:49,0:49:99:.:.:0,120,1800:. 1/1:0,48:48:99:.:.:1437,144,0:. 0/1:20,24:44:99:.:.:619,0,456:. 0/1:29,20:49:99:.:.:426,0,650:. 0/0:49,0:49:99:.:.:0,114,1177:. 0/1:21,26:47:99:.:.:633,0,434:. 0/0:49,0:49:99:.:.:0,118,1384:. 1/1:3,49:54:92:.:.:1369,92,0:. 0/1:17,32:49:99:.:.:782,0,340:. 1/1:0,45:45:99:.:.:1361,135,0:. NW_016690308.1 2570455 . T A 34276.3 . AC=60;AF=0.037;AN=1630;BaseQRankSum=4.42;DP=38108;ExcessHet=0.0082;FS=1.326;InbreedingCoeff=0.2780;MLEAC=62;MLEAF=0.038;MQ=59.99;MQRankSum=0.00;QD=12.53;ReadPosRankSum=0.00;SOR=0.918 GT:AD:DP:GQ:PGT:PID:PL:PS 0/0:53,0:53:99:.:.:0,120,1800:. 0/0:53,0:53:99:.:.:0,120,1800:. 0/0:49,0:49:99:.:.:0,119,1510:. 0/0:47,0:47:99:.:.:0,120,1800:. 0/0:46,0:46:99:.:.:0,120,1379:. 0/1:21,27:48:99:.:.:580,0,377:. 0/0:47,0:47:99:.:.:0,109,1325:. 1/1:0,51:51:99:.:.:1382,152,0:. 0/0:51,0:51:99:.:.:0,120,1800:. 0/0:52,0:52:99:.:.:0,120,1800:. 0/0:48,0:48:99:.:.:0,120,1800:. 0/0:49,0:49:99:.:.:0,120,1800:. 0/0:48,0:48:99:.:.:0,120,1283:. NW_016690309.1 554712 . T C 18830.3 . AC=30;AF=0.018;AN=1634;BaseQRankSum=-5.499e+00;DP=41142;ExcessHet=0.0000;FS=0.000;InbreedingCoeff=0.6255;MLEAC=31;MLEAF=0.019;MQ=60.00;MQRankSum=0.00;QD=18.12;ReadPosRankSum=0.00;SOR=1.977 GT:AD:DP:GQ:PL 0/1:25,27:52:99:584,0,614 1/1:0,51:51:99:1348,153,0 0/1:31,20:51:99:374,0,746 1/1:1,49:50:99:1278,122,0 1/1:0,50:50:99:1336,150,0 1/1:0,48:48:99:1311,144,0 0/1:21,30:51:99:603,0,433 0/1:25,24:49:99:480,0,567 1/1:1,50:51:99:1316,122,0 1/1:0,49:49:99:1395,147,0 1/1:0,54:54:99:1475,162,0 1/1:0,50:50:99:1379,150,0 0/1:35,15:50:99:260,0,844 NW_016690309.1 724901 . C T 159649 . AC=256;AF=0.158;AN=1622;BaseQRankSum=5.71;DP=37547;ExcessHet=-0.0000;FS=0.000;InbreedingCoeff=0.3459;MLEAC=265;MLEAF=0.163;MQ=60.00;MQRankSum=0.00;QD=16.47;ReadPosRankSum=0.00;SOR=0.830 GT:AD:DP:GQ:PGT:PID:PL:PS 0/1:49,43:92:99:.:.:1006,0,1002:. 0/1:23,21:44:99:.:.:509,0,460:. 1/1:0,46:46:99:.:.:1321,136,0:. 0/1:16,30:46:99:.:.:712,0,246:. 0/0:46,0:46:99:.:.:0,120,1800:. 0/0:44,0:44:99:.:.:0,120,1800:. 0/0:45,0:45:99:.:.:0,120,1800:. 1/1:0,49:49:99:.:.:1412,147,0:. 0/0:48,0:48:99:.:.:0,120,1800:. 1/1:0,51:51:99:.:.:1475,152,0:. 0/0:50,0:50:99:.:.:0,120,1800:. 0/1:31,19:50:99:.:.:410,0,669:. 0/1:30,22:52:99:.:.:464,0,651:. NW_016690309.1 938047 . T C 823232 . AC=1124;AF=0.751;AN=1496;BaseQRankSum=-6.549e+00;DP=39724;ExcessHet=0.0000;FS=0.000;InbreedingCoeff=0.3045;MLEAC=1271;MLEAF=0.850;MQ=60.00;MQRankSum=0.00;QD=25.28;ReadPosRankSum=0.00;SOR=0.189 GT:AD:DP:GQ:PGT:PID:PL:PS 0/0:50,0:50:99:.:.:0,120,1271:. 0/1:29,21:50:99:.:.:411,0,684:. 0/0:49,0:49:99:.:.:0,120,1800:. 0/1:23,22:45:99:.:.:455,0,526:. 0/0:48,0:48:99:.:.:0,120,1800:. 1/1:0,50:50:99:.:.:1287,150,0:. 0/1:28,18:46:99:.:.:324,0,639:. 0/1:24,24:48:99:.:.:499,0,570:. 0/0:47,0:47:99:.:.:0,120,1800:. 1/1:0,50:50:99:.:.:1384,150,0:. 0/1:30,20:50:99:.:.:387,0,743:. 0/1:29,21:50:99:.:.:429,0,741:. 0/0:48,0:48:99:.:.:0,120,1800:. NW_016690309.1 1334384 . C T 132767 . AC=195;AF=0.123;AN=1588;BaseQRankSum=6.04;DP=37773;ExcessHet=-0.0000;FS=0.000;InbreedingCoeff=0.3890;MLEAC=208;MLEAF=0.131;MQ=60.00;MQRankSum=0.00;QD=17.76;ReadPosRankSum=0.00;SOR=0.901 GT:AD:DP:GQ:PGT:PID:PL:PS 0/1:26,24:50:99:.:.:632,0,617:. 0/1:27,21:48:99:.:.:501,0,629:. 0|1:26,23:49:99:0|1:1334384_C_T:801,0,1023:1334384 0/0:48,0:48:99:.:.:0,112,1155:. 0/0:50,0:50:99:.:.:0,116,1456:. 0/0:46,0:46:99:.:.:0,120,1800:. 0/1:26,24:50:99:.:.:630,0,645:. 1/1:0,48:48:99:.:.:1557,144,0:. 0/1:19,30:49:99:.:.:832,0,417:. 1/1:0,49:49:99:.:.:1599,147,0:. 0/1:17,32:49:99:.:.:896,0,354:. 0/1:22,28:50:99:.:.:765,0,501:. 1/1:0,48:48:99:.:.:1536,144,0:. NW_016690309.1 2678722 . C T 24979.4 . AC=38;AF=0.023;AN=1622;BaseQRankSum=6.52;DP=38715;ExcessHet=-0.0000;FS=0.000;InbreedingCoeff=0.6613;MLEAC=39;MLEAF=0.024;MQ=60.00;MQRankSum=0.00;QD=20.14;ReadPosRankSum=0.00;SOR=2.226 GT:AD:DP:GQ:PL 0/0:52,0:52:99:0,107,1351 0/1:23,27:50:79:642,0,79 1/1:13,37:50:21:1002,21,0 0/0:48,0:48:99:0,118,1404 0/1:17,28:45:34:705,0,34 1/1:9,40:49:57:1116,57,0 0/1:21,28:49:99:680,0,798 1/1:0,48:48:99:1497,144,0 0/1:37,13:50:99:266,0,219 1/1:0,50:50:99:1510,150,0 1/1:0,51:51:99:1512,153,0 0/1:32,19:51:99:425,0,166 0/0:49,0:49:99:0,101,1272 NW_016690311.1 2212319 . G T 1854.63 . AC=3;AF=1.843e-03;AN=1628;BaseQRankSum=5.57;DP=36094;ExcessHet=3.0183;FS=0.000;InbreedingCoeff=0.5323;MLEAC=3;MLEAF=1.843e-03;MQ=60.00;MQRankSum=0.00;QD=12.70;ReadPosRankSum=0.00;SOR=0.556 GT:AD:DP:GQ:PL 0/0:48,0:48:99:0,120,1800 0/0:47,0:47:99:0,120,1800 0/0:49,0:49:99:0,112,1402 0/0:47,0:47:99:0,119,1417 0/0:48,0:48:99:0,120,1800 0/0:47,0:47:99:0,104,1204 0/0:48,0:48:99:0,120,1800 0/1:33,16:49:99:346,0,788 0/1:24,25:49:99:964,0,919 0/0:49,0:49:99:0,120,1316 0/1:22,26:49:99:617,0,454 0/0:48,0:48:99:0,120,1800 0/0:48,0:48:99:0,120,1800 NW_016690312.1 2226329 . G A 86915 . AC=124;AF=0.076;AN=1634;BaseQRankSum=5.28;DP=39094;ExcessHet=0.0000;FS=1.417;InbreedingCoeff=0.5098;MLEAC=127;MLEAF=0.078;MQ=60.00;MQRankSum=0.00;QD=19.18;ReadPosRankSum=0.00;SOR=0.304 GT:AD:DP:GQ:PGT:PID:PL:PS 0/0:55,0:55:99:.:.:0,106,1235:. 0/0:50,0:50:99:.:.:0,119,1392:. 0/0:47,0:47:99:.:.:0,103,1498:. 0/1:18,27:45:99:.:.:661,0,360:. 0/0:47,0:47:99:.:.:0,106,778:. 0/1:21,24:45:99:.:.:579,0,447:. 0/0:50,0:50:99:.:.:0,120,1800:. 0|1:27,22:49:99:1|0:2226304_G_A:512,0,1068:2226304 0/0:49,0:49:99:.:.:0,118,1292:. 0/0:49,0:49:99:.:.:0,120,1198:. 1/1:0,49:49:99:.:.:1385,146,0:. 0/0:49,0:49:99:.:.:0,119,1296:. 0/0:50,0:50:99:.:.:0,120,1800:. NW_016690312.1 2311824 . C T 469012 . AC=588;AF=0.367;AN=1604;BaseQRankSum=6.07;DP=37790;ExcessHet=0.0000;FS=2.961;InbreedingCoeff=0.2799;MLEAC=621;MLEAF=0.387;MQ=60.00;MQRankSum=0.00;QD=23.20;ReadPosRankSum=0.00;SOR=1.119 GT:AD:DP:GQ:PGT:PID:PL:PS 0|1:31,20:51:99:0|1:2311824_C_T:740,0,1238:2311824 0|1:27,22:49:99:0|1:2311824_C_T:817,0,982:2311824 1|1:0,49:49:99:1|1:2311824_C_T:2205,147,0:2311824 0|1:27,22:49:99:0|1:2311824_C_T:825,0,1068:2311824 0|1:30,19:49:99:0|1:2311824_C_T:708,0,1203:2311824 0|1:32,17:49:99:0|1:2311806_A_G:616,0,1293:2311806 0/0:49,0:49:99:.:.:0,120,1800:. 0/0:48,0:48:99:.:.:0,120,1800:. 0/1:28,18:46:99:.:.:389,0,483:. 0|1:30,19:49:99:0|1:2311824_C_T:708,0,1132:2311824 1|1:0,50:50:99:1|1:2311824_C_T:2212,150,0:2311824 0|1:32,16:48:99:0|1:2311824_C_T:576,0,1296:2311824 0/1:36,13:49:99:.:.:438,0,1473:. NW_016690312.1 2399057 . T C 104764 . AC=194;AF=0.121;AN=1600;BaseQRankSum=-6.094e+00;DP=34144;ExcessHet=0.0000;FS=0.000;InbreedingCoeff=0.2530;MLEAC=205;MLEAF=0.128;MQ=60.00;MQRankSum=0.00;QD=14.10;ReadPosRankSum=0.00;SOR=1.292 GT:AD:DP:GQ:PGT:PID:PL:PS 1/1:0,47:47:99:.:.:1539,140,0:. 0/1:11,39:50:99:.:.:866,0,160:. 0/1:22,26:48:99:.:.:557,0,510:. 0/1:29,19:48:99:.:.:347,0,1161:. 1/1:1,48:49:99:.:.:1251,117,0:. 1/1:0,49:49:99:.:.:1291,147,0:. 0/1:13,31:44:99:.:.:692,0,237:. 1/1:0,46:46:99:.:.:1224,138,0:. 0/1:23,21:44:99:.:.:426,0,528:. 1/1:0,49:49:99:.:.:1304,147,0:. 1/1:1,50:51:99:.:.:1287,124,0:. 1/1:0,48:48:99:.:.:1245,143,0:. 0/1:10,37:47:99:.:.:845,0,143:. NW_016690312.1 2521561 . G A 62462.3 . AC=87;AF=0.053;AN=1632;BaseQRankSum=5.71;DP=39350;ExcessHet=0.2099;FS=0.000;InbreedingCoeff=0.1856;MLEAC=90;MLEAF=0.055;MQ=60.00;MQRankSum=0.00;QD=15.64;ReadPosRankSum=0.00;SOR=0.228 GT:AD:DP:GQ:PGT:PID:PL:PS 0/0:47,0:47:99:.:.:0,120,1800:. 0/0:51,0:51:99:.:.:0,120,1800:. 0/0:49,0:49:99:.:.:0,120,1244:. 0/0:50,0:50:99:.:.:0,120,1800:. 0/0:50,0:50:99:.:.:0,120,1800:. 0/0:49,0:49:99:.:.:0,120,1800:. 0/0:49,0:49:99:.:.:0,114,758:. 0/1:18,28:47:99:.:.:766,0,395:. 1|1:0,49:49:99:1|1:2521561_G_A:2067,147,0:2521561 0/0:50,0:50:99:.:.:0,106,1200:. 0/0:50,0:50:99:.:.:0,120,1800:. 1|1:0,50:50:99:1|1:2521561_G_A:2148,151,0:2521561 0/1:30,20:50:99:.:.:474,0,764:. NW_016690313.1 558744 . C T 394319 . AC=454;AF=0.284;AN=1600;BaseQRankSum=2.55;DP=41065;ExcessHet=0.0000;FS=0.000;InbreedingCoeff=0.5765;MLEAC=494;MLEAF=0.309;MQ=60.00;MQRankSum=0.00;QD=26.94;ReadPosRankSum=0.086;SOR=0.655 GT:AD:DP:GQ:PGT:PID:PL:PS 1|1:1,51:52:99:1|1:558734_T_C:2074,112,0:558734 1|1:0,51:51:99:1|1:558734_T_C:2185,154,0:558734 1|1:0,51:51:99:1|1:558734_T_C:2114,153,0:558734 0/0:40,0:40:0:.:.:0,0,702:. 1|1:0,55:56:99:1|1:558734_T_C:2332,166,0:558734 1|1:0,51:51:99:1|1:558734_T_C:2135,154,0:558734 1|1:0,49:49:99:1|1:558734_T_C:1983,147,0:558734 1|1:0,48:48:99:1|1:558734_T_C:1973,144,0:558734 1|1:0,50:50:99:1|1:558734_T_C:2121,150,0:558734 0/0:51,0:51:99:.:.:0,120,1800:. 1/1:0,50:50:99:.:.:1681,150,0:. 1|1:0,51:51:99:1|1:558734_T_C:2155,154,0:558734 0|1:34,15:49:99:0|1:558734_T_C:509,0,1357:558734 NW_016690313.1 1553591 . G A 206857 . AC=270;AF=0.165;AN=1634;BaseQRankSum=6.14;DP=41178;ExcessHet=-0.0000;FS=2.781;InbreedingCoeff=0.4627;MLEAC=279;MLEAF=0.171;MQ=59.99;MQRankSum=0.00;QD=20.96;ReadPosRankSum=0.00;SOR=1.790 GT:AD:DP:GQ:PGT:PID:PL:PS 0/0:50,0:50:99:.:.:0,120,1800:. 0/0:53,0:53:99:.:.:0,103,1415:. 0/0:53,0:53:99:.:.:0,120,1800:. 0/0:51,0:51:99:.:.:0,115,1565:. 0/0:49,0:49:99:.:.:0,113,1386:. 0/0:54,0:54:99:.:.:0,109,1461:. 0/1:28,23:51:99:.:.:488,0,178:. 0/0:49,0:49:99:.:.:0,115,1229:. 0/0:53,0:53:99:.:.:0,117,1137:. 0/1:20,31:51:47:.:.:655,0,47:. 0/1:25,25:50:99:.:.:542,0,367:. 0/0:52,0:52:99:.:.:0,120,1800:. 0/0:50,0:50:99:.:.:0,115,1535:. NW_016690314.1 1865444 . G A 2905.83 . AC=5;AF=3.094e-03;AN=1616;BaseQRankSum=6.01;DP=38004;ExcessHet=3.0372;FS=0.000;InbreedingCoeff=0.5187;MLEAC=5;MLEAF=3.094e-03;MQ=60.00;MQRankSum=0.00;QD=11.53;ReadPosRankSum=0.00;SOR=0.775 GT:AD:DP:GQ:PL 0/0:49,0:49:99:0,119,1301 0/0:50,0:50:99:0,118,1331 0/0:50,0:50:99:0,120,1800 0/0:49,0:49:99:0,120,1800 0/0:50,0:50:99:0,120,1800 0/0:49,0:49:99:0,119,1343 0/0:48,0:48:99:0,120,1800 0/1:23,27:50:99:601,0,439 0/1:24,26:50:99:596,0,490 0/1:17,33:50:99:802,0,274 0/0:50,0:50:99:0,120,1800 0/0:46,0:46:99:0,102,1365 0/1:35,16:51:99:339,0,810 NW_016690315.1 867948 . C T 6633.38 . AC=11;AF=6.815e-03;AN=1614;BaseQRankSum=6.01;DP=34983;ExcessHet=0.0000;FS=83.654;InbreedingCoeff=0.6362;MLEAC=12;MLEAF=7.435e-03;MQ=60.00;MQRankSum=0.00;QD=21.47;ReadPosRankSum=0.00;SOR=6.605 GT:AD:DP:GQ:PL 0/0:47,0:47:99:0,120,1800 0/0:47,0:47:99:0,118,1242 0/0:47,0:47:99:0,120,1444 0/1:11,12:23:99:300,0,232 0/1:26,23:49:99:557,0,574 0/0:45,0:45:99:0,120,1800 0/1:28,18:46:99:385,0,590 1/1:0,47:47:99:1386,140,0 0/0:47,0:47:99:0,120,1800 1/1:0,49:49:99:1461,147,0 1/1:0,47:47:99:1341,141,0 1/1:0,48:48:99:1430,144,0 0/0:47,0:47:99:0,111,1404 NW_016690315.1 1578564 . C T 76891.9 . AC=132;AF=0.081;AN=1626;BaseQRankSum=5.85;DP=39811;ExcessHet=-0.0000;FS=2.939;InbreedingCoeff=0.5643;MLEAC=137;MLEAF=0.084;MQ=60.00;MQRankSum=0.00;QD=17.42;ReadPosRankSum=0.00;SOR=1.318 GT:AD:DP:GQ:PGT:PID:PL:PS 0|1:33,17:50:99:0|1:1578564_C_T:564,0,1335:1578564 0/0:51,0:51:99:.:.:0,100,1062:. 0/0:48,0:48:99:.:.:0,117,1345:. 0/0:49,0:49:99:.:.:0,120,1603:. 0/0:49,0:49:99:.:.:0,120,1800:. 0/0:50,0:50:99:.:.:0,120,1244:. 0/0:51,0:51:99:.:.:0,120,1800:. 0/0:48,0:48:99:.:.:0,120,1800:. 0/1:21,29:50:99:.:.:677,0,333:. 0/0:49,0:49:99:.:.:0,115,1383:. 0/0:50,0:50:99:.:.:0,120,1800:. 0/0:51,0:51:99:.:.:0,108,1407:. 0/1:27,23:50:99:.:.:489,0,463:. NW_016690316.1 1226238 . A G 651.99 . AC=3;AF=1.880e-03;AN=1596;BaseQRankSum=-6.314e+00;DP=40920;ExcessHet=3.0185;FS=0.000;InbreedingCoeff=0.5996;MLEAC=3;MLEAF=1.880e-03;MQ=60.00;MQRankSum=0.00;QD=5.02;ReadPosRankSum=0.00;SOR=0.553 GT:AD:DP:GQ:PGT:PID:PL:PS 0/0:55,0:55:99:.:.:0,120,1800:. 0/0:53,0:53:99:.:.:0,108,1531:. 0/0:52,0:52:99:.:.:0,120,1800:. 0/0:53,0:53:99:.:.:0,120,1800:. 0/0:48,0:48:99:.:.:0,114,1187:. 0/0:53,0:53:99:.:.:0,120,1800:. 0/0:49,0:49:99:.:.:0,120,1800:. 0/0:48,0:48:99:.:.:0,112,1108:. 0/1:20,23:43:99:.:.:128,0,435:. 0/0:50,0:50:99:.:.:0,115,1386:. 0/0:52,0:52:99:.:.:0,99,1223:. 0/1:23,20:43:99:.:.:325,0,906:. 0/1:27,17:44:99:.:.:271,0,639:. NW_016690316.1 1301855 . T C 10989.2 . 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AC=190;AF=0.118;AN=1616;BaseQRankSum=6.67;DP=39939;ExcessHet=0.0000;FS=1.889;InbreedingCoeff=0.3605;MLEAC=199;MLEAF=0.123;MQ=60.00;MQRankSum=0.00;QD=19.19;ReadPosRankSum=0.00;SOR=1.241 GT:AD:DP:GQ:PGT:PID:PL:PS 0/0:46,0:46:99:.:.:0,117,1039:. 1/1:1,48:49:99:.:.:1810,137,0:. 1/1:0,50:50:99:.:.:1581,150,0:. 0|1:34,16:50:99:0|1:398187_G_A:558,0,1032:398187 0/0:50,0:50:99:.:.:0,120,1273:. 0|1:29,21:50:99:0|1:398187_G_A:505,0,139:398187 0/0:50,0:50:99:.:.:0,120,1800:. 0|1:23,27:50:99:0|1:398187_G_A:699,0,750:398187 0/0:50,0:50:99:.:.:0,120,1800:. 0/0:46,0:46:99:.:.:0,112,976:. 0/1:23,27:50:99:.:.:655,0,751:. 0/0:47,0:47:99:.:.:0,113,1280:. 0|1:26,24:50:99:0|1:398187_G_A:538,0,851:398187 NW_016690317.1 517274 . C T 918834 . AC=939;AF=0.575;AN=1632;BaseQRankSum=6.51;DP=39669;ExcessHet=0.1400;FS=2.533;InbreedingCoeff=0.0715;MLEAC=971;MLEAF=0.595;MQ=60.00;MQRankSum=0.00;QD=28.71;ReadPosRankSum=0.00;SOR=0.234 GT:AD:DP:GQ:PGT:PID:PL:PS 1|1:0,50:50:99:1|1:517274_C_T:2250,151,0:517274 0/0:48,0:48:99:.:.:0,120,1800:. 0|1:18,32:50:99:0|1:517274_C_T:1289,0,659:517274 1|1:0,50:50:99:1|1:517274_C_T:2250,151,0:517274 1|1:0,47:47:99:1|1:517274_C_T:2115,141,0:517274 1|1:0,50:50:99:1|1:517274_C_T:2250,151,0:517274 1|1:0,49:49:99:1|1:517274_C_T:2205,147,0:517274 1|1:0,50:50:99:1|1:517274_C_T:2250,151,0:517274 1|1:0,49:49:99:1|1:517274_C_T:2205,147,0:517274 1|1:0,49:49:99:1|1:517274_C_T:2205,147,0:517274 1|1:0,49:49:99:1|1:517274_C_T:2205,147,0:517274 1|1:0,49:49:99:1|1:517274_C_T:2205,147,0:517274 1|1:0,49:49:99:1|1:517274_C_T:2205,147,0:517274 NW_016690317.1 1204319 . T C 251885 . AC=446;AF=0.277;AN=1610;BaseQRankSum=-5.440e+00;DP=38057;ExcessHet=0.0000;FS=0.000;InbreedingCoeff=0.1817;MLEAC=469;MLEAF=0.291;MQ=60.00;MQRankSum=0.00;QD=14.61;ReadPosRankSum=0.00;SOR=1.473 GT:AD:DP:GQ:PGT:PID:PL:PS 0/1:26,25:51:99:.:.:462,0,537:. 1/1:0,48:48:99:.:.:1194,143,0:. 1/1:0,49:49:99:.:.:1179,146,0:. 0/1:22,26:48:99:.:.:523,0,821:. 1/1:0,51:51:99:.:.:1230,152,0:. 1/1:0,49:49:99:.:.:1310,147,0:. 1/1:0,50:50:99:.:.:1312,150,0:. 0/1:26,24:50:99:.:.:484,0,595:. 1/1:0,46:46:99:.:.:1184,138,0:. 1/1:0,47:47:99:.:.:1231,141,0:. 1/1:0,47:47:99:.:.:1249,141,0:. 1/1:0,51:51:99:.:.:1279,152,0:. 1/1:0,50:50:99:.:.:1285,150,0:. NW_016690317.1 1446903 . C T 12662.9 . AC=16;AF=9.975e-03;AN=1604;BaseQRankSum=6.63;DP=35559;ExcessHet=0.0001;FS=0.000;InbreedingCoeff=0.4942;MLEAC=17;MLEAF=0.011;MQ=60.00;MQRankSum=0.00;QD=21.76;ReadPosRankSum=0.00;SOR=1.133 GT:AD:DP:GQ:PGT:PID:PL:PS 0/0:49,0:49:99:.:.:0,117,1376:. 0/0:48,0:48:99:.:.:0,120,1800:. 0/0:38,0:38:99:.:.:0,114,934:. 0/0:44,0:44:99:.:.:0,120,1800:. 0/0:42,0:42:99:.:.:0,120,1800:. 0/0:49,0:49:99:.:.:0,120,1800:. 0/0:47,0:47:99:.:.:0,120,1800:. 0/0:50,0:50:99:.:.:0,120,1800:. 0/0:45,0:45:99:.:.:0,120,1800:. 0/0:48,0:48:99:.:.:0,120,1800:. 0/0:50,0:50:99:.:.:0,120,1800:. 1|1:0,51:51:99:1|1:1446903_C_T:2275,154,0:1446903 0|1:22,27:49:99:0|1:1446903_C_T:1062,0,834:1446903 NW_016690317.1 1744550 . T C 228021 . AC=351;AF=0.217;AN=1618;BaseQRankSum=-4.873e+00;DP=36959;ExcessHet=0.0000;FS=3.897;InbreedingCoeff=0.1940;MLEAC=367;MLEAF=0.227;MQ=59.99;MQRankSum=0.00;QD=16.67;ReadPosRankSum=0.00;SOR=0.241 GT:AD:DP:GQ:PGT:PID:PL:PS 0/0:45,0:45:99:.:.:0,113,1392:. 0/0:46,0:46:99:.:.:0,120,1800:. 0/0:45,0:45:99:.:.:0,120,1800:. 0/1:25,24:49:99:.:.:543,0,603:. 0/0:46,0:46:99:.:.:0,120,1800:. 0/1:21,24:45:99:.:.:569,0,507:. 0/0:46,0:46:99:.:.:0,120,1800:. 0/0:47,0:47:99:.:.:0,120,1800:. 0/1:29,20:49:99:.:.:386,0,668:. 0/0:47,0:47:99:.:.:0,118,1091:. 0/0:48,0:48:99:.:.:0,120,1800:. 0/0:49,0:49:99:.:.:0,120,1800:. 0/0:45,0:45:99:.:.:0,113,1246:. NW_016690318.1 526373 . A T 4457.25 . 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AC=40;AF=0.025;AN=1626;BaseQRankSum=4.79;DP=39178;ExcessHet=0.0000;FS=3.521;InbreedingCoeff=0.5729;MLEAC=42;MLEAF=0.026;MQ=60.00;MQRankSum=0.00;QD=18.99;ReadPosRankSum=0.00;SOR=1.743 GT:AD:DP:GQ:PL 0/1:19,30:49:99:798,0,422 0/0:49,0:49:99:0,120,1800 1/1:0,50:50:99:1660,150,0 0/0:49,0:49:99:0,120,1085 0/0:49,0:49:99:0,117,1440 0/1:24,26:50:99:670,0,557 0/1:30,19:49:99:438,0,695 0/0:49,0:49:99:0,120,1800 1/1:0,49:49:99:1556,147,0 0/0:49,0:49:99:0,120,1800 1/1:1,48:49:99:1480,119,0 0/1:24,25:49:99:633,0,567 1/1:1,47:48:99:1758,134,0 NW_016690319.1 1877911 . A G 5670.52 . 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AC=6;AF=3.686e-03;AN=1628;BaseQRankSum=-5.807e+00;DP=39219;ExcessHet=0.0201;FS=0.000;InbreedingCoeff=0.5879;MLEAC=6;MLEAF=3.686e-03;MQ=59.90;MQRankSum=0.00;QD=22.98;ReadPosRankSum=0.00;SOR=1.113 GT:AD:DP:GQ:PGT:PID:PL:PS 0/0:50,0:50:99:.:.:0,120,1800:. 0|1:29,21:50:99:0|1:909150_T_C:794,0,1154:909150 0|1:20,25:45:99:0|1:909150_T_C:990,0,765:909150 0/0:51,0:51:99:.:.:0,120,1800:. 0/0:49,0:49:99:.:.:0,120,1800:. 0/0:46,0:46:99:.:.:0,113,1300:. 0|1:25,24:49:99:0|1:909150_T_C:792,0,978:909150 0/0:51,0:51:99:.:.:0,120,1800:. 0/0:50,0:50:99:.:.:0,113,1503:. 0/0:50,0:50:99:.:.:0,120,1800:. 0/0:53,0:53:99:.:.:0,120,1800:. 0/0:49,0:49:99:.:.:0,120,1800:. 0/0:49,0:49:99:.:.:0,120,1800:. NW_016690321.1 1719915 . G A 33533.7 . 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AC=11;AF=6.757e-03;AN=1628;BaseQRankSum=6.64;DP=38181;ExcessHet=0.0000;FS=0.000;InbreedingCoeff=0.6324;MLEAC=11;MLEAF=6.757e-03;MQ=60.00;MQRankSum=0.00;QD=19.91;ReadPosRankSum=0.00;SOR=2.142 GT:AD:DP:GQ:PL 0/0:50,0:50:99:0,120,1800 0/0:51,0:51:99:0,104,1456 0/0:48,0:48:99:0,120,1800 0/0:49,0:49:99:0,120,1800 0/0:49,0:49:99:0,120,1800 0/0:49,0:49:99:0,110,1204 0/0:48,0:48:99:0,103,1236 0/1:26,22:48:99:505,0,549 1/1:0,50:50:99:1478,150,0 0/1:36,14:50:99:275,0,845 1/1:0,50:51:99:1524,150,0 1/1:0,51:51:99:1521,153,0 1/1:0,48:48:99:1421,144,0 NW_016690323.1 427579 . G A 732079 . 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AC=27;AF=0.017;AN=1628;BaseQRankSum=-5.985e+00;DP=38355;ExcessHet=0.0000;FS=0.000;InbreedingCoeff=0.5351;MLEAC=28;MLEAF=0.017;MQ=59.99;MQRankSum=0.00;QD=15.97;ReadPosRankSum=0.00;SOR=1.398 GT:AD:DP:GQ:PL 0/0:47,0:47:99:0,120,1800 0/1:30,20:50:99:387,0,744 0/1:23,23:47:99:539,0,569 1/1:0,51:51:99:1458,153,0 0/1:25,23:48:99:539,0,649 0/1:28,23:51:99:505,0,1090 1/1:0,49:49:99:1395,147,0 0/1:22,28:50:99:699,0,582 0/1:28,20:48:99:451,0,741 0/0:50,0:50:99:0,116,1461 1/1:0,48:48:99:1362,143,0 0/1:23,22:45:99:510,0,606 1/1:0,50:50:99:1452,150,0 NW_016690324.1 1188112 . G A 2139.32 . 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AC=14;AF=8.589e-03;AN=1630;BaseQRankSum=1.40;DP=39212;ExcessHet=0.0024;FS=0.000;InbreedingCoeff=0.4799;MLEAC=15;MLEAF=9.202e-03;MQ=60.00;MQRankSum=0.00;QD=21.52;ReadPosRankSum=0.00;SOR=1.124 GT:AD:DP:GQ:PGT:PID:PL:PS 1|1:0,51:51:99:1|1:2188760_A_C:2281,154,0:2188760 0|1:25,30:55:99:0|1:2188760_A_C:1184,0,959:2188760 0/0:49,0:49:99:.:.:0,120,1800:. 0|1:21,29:50:99:0|1:2188760_A_C:1154,0,794:2188760 0/0:51,0:51:99:.:.:0,120,1280:. 1|1:0,49:50:99:1|1:2188760_A_C:2205,147,0:2188760 0|1:31,19:50:99:0|1:2188760_A_C:704,0,1244:2188760 0/0:49,0:49:99:.:.:0,112,1469:. 0/1:25,27:53:99:.:.:668,0,581:. 0|1:24,25:50:99:0|1:2188760_A_C:978,0,897:2188760 0/0:49,0:49:99:.:.:0,120,1800:. 0/0:50,0:50:99:.:.:0,113,1416:. 0/0:50,0:50:99:.:.:0,119,1410:. NW_016690327.1 2226734 . C T 186017 . AC=265;AF=0.164;AN=1620;BaseQRankSum=6.53;DP=40673;ExcessHet=-0.0000;FS=0.000;InbreedingCoeff=0.4336;MLEAC=276;MLEAF=0.170;MQ=59.99;MQRankSum=0.00;QD=18.67;ReadPosRankSum=0.00;SOR=0.816 GT:AD:DP:GQ:PGT:PID:PL:PS 0|1:55,9:64:99:0|1:2226734_C_T:212,0,2282:2226734 1/1:0,50:50:99:.:.:1430,150,0:. 0/0:52,0:52:99:.:.:0,113,1213:. 0/0:49,0:49:99:.:.:0,110,1211:. 0/0:56,0:56:99:.:.:0,104,1404:. 0/0:52,0:52:99:.:.:0,113,1334:. 0/0:47,0:47:99:.:.:0,110,1347:. 0/0:50,0:50:99:.:.:0,112,1351:. 0/0:53,0:53:99:.:.:0,120,1800:. 0/0:49,0:49:99:.:.:0,102,1188:. 0/0:50,0:50:99:.:.:0,116,1293:. 0/0:50,0:50:99:.:.:0,114,1181:. 0/0:51,0:51:99:.:.:0,120,1382:. NW_016690330.1 50666 . G A 24004.1 . AC=36;AF=0.022;AN=1628;BaseQRankSum=2.72;DP=37306;ExcessHet=0.0000;FS=0.000;InbreedingCoeff=0.7635;MLEAC=37;MLEAF=0.023;MQ=60.00;MQRankSum=0.00;QD=25.24;ReadPosRankSum=0.00;SOR=4.368 GT:AD:DP:GQ:PL 0/1:25,22:47:99:548,0,645 0/0:49,0:49:99:0,110,1272 0/0:48,0:48:99:0,119,1265 0/0:49,0:49:99:0,120,1800 0/0:49,0:49:99:0,118,1187 0/0:49,0:49:99:0,116,1061 0/0:50,0:50:99:0,120,1800 0/0:49,0:49:99:0,118,1036 0/0:49,0:49:99:0,115,1281 0/0:48,0:48:99:0,115,1514 0/0:49,0:49:99:0,120,1800 0/1:19,28:47:99:683,0,402 0/1:31,19:50:99:411,0,738 NW_016690330.1 1683754 . C T 3423.26 . AC=5;AF=3.067e-03;AN=1630;BaseQRankSum=6.96;DP=39437;ExcessHet=0.0000;FS=0.000;InbreedingCoeff=0.6364;MLEAC=5;MLEAF=3.067e-03;MQ=60.00;MQRankSum=0.00;QD=22.97;ReadPosRankSum=0.00;SOR=3.010 GT:AD:DP:GQ:PL 0/0:48,0:48:99:0,117,1294 0/0:48,0:48:99:0,110,1402 0/0:50,0:50:99:0,118,1353 0/0:47,0:47:99:0,112,1309 0/0:49,0:49:99:0,119,1014 1/1:0,49:49:99:1448,147,0 1/1:0,50:50:99:1542,150,0 0/0:48,0:48:99:0,109,1296 0/0:49,0:49:99:0,104,1253 0/0:48,0:48:99:0,120,1800 0/0:49,0:49:99:0,120,1614 0/0:50,0:50:99:0,120,1800 0/0:48,0:48:99:0,118,1366 NW_016690331.1 22150 . T C 152350 . AC=232;AF=0.142;AN=1632;BaseQRankSum=-6.292e+00;DP=39822;ExcessHet=0.0040;FS=1.963;InbreedingCoeff=0.1530;MLEAC=240;MLEAF=0.147;MQ=60.00;MQRankSum=0.00;QD=14.93;ReadPosRankSum=0.00;SOR=0.149 GT:AD:DP:GQ:PGT:PID:PL:PS 0/0:50,0:50:99:.:.:0,120,1326:. 0/0:47,0:47:99:.:.:0,120,1800:. 0/0:49,0:49:99:.:.:0,120,1800:. 0/0:49,0:49:99:.:.:0,120,1800:. 0/0:47,0:47:99:.:.:0,117,1234:. 0/0:49,0:49:99:.:.:0,120,1800:. 0/0:48,0:48:99:.:.:0,118,1251:. 0/1:33,16:49:99:.:.:263,0,829:. 1/1:1,48:49:99:.:.:1184,118,0:. 0/0:49,0:49:99:.:.:0,120,1800:. 0/0:49,0:49:99:.:.:0,120,1800:. 0/1:18,32:50:99:.:.:704,0,385:. 0/1:28,21:49:99:.:.:413,0,681:. NW_016690331.1 488307 . G A 2881.94 . AC=6;AF=3.676e-03;AN=1632;BaseQRankSum=5.70;DP=39751;ExcessHet=0.0200;FS=0.000;InbreedingCoeff=0.5730;MLEAC=6;MLEAF=3.676e-03;MQ=60.00;MQRankSum=0.00;QD=12.21;ReadPosRankSum=0.00;SOR=0.364 GT:AD:DP:GQ:PL 0/0:49,0:49:99:0,120,1800 0/0:49,0:49:99:0,120,1800 0/0:50,0:50:99:0,116,1315 0/1:32,17:49:99:361,0,190 0/0:50,0:50:99:0,120,1800 0/0:50,0:50:99:0,120,1800 0/0:48,0:48:99:0,120,1800 0/0:45,0:45:99:0,120,1800 1/1:3,46:49:99:1323,117,0 0/1:20,23:43:99:870,0,584 0/0:43,0:43:99:0,120,1800 0/0:48,0:48:99:0,120,1800 0/0:45,0:45:99:0,120,1800 NW_016690331.1 610338 . G A 11509.4 . 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AC=7;AF=4.294e-03;AN=1630;BaseQRankSum=3.82;DP=38682;ExcessHet=0.0001;FS=0.000;InbreedingCoeff=0.5958;MLEAC=7;MLEAF=4.294e-03;MQ=60.00;MQRankSum=0.00;QD=17.99;ReadPosRankSum=0.00;SOR=1.884 GT:AD:DP:GQ:PL 0/0:50,0:50:99:0,109,1334 0/0:50,0:50:99:0,120,1800 0/0:49,0:49:99:0,120,1800 0/0:48,0:48:99:0,112,1319 0/0:50,0:50:99:0,110,1531 0/0:48,0:48:99:0,120,1800 0/0:49,0:49:99:0,107,1268 0/0:49,0:49:99:0,120,1800 1/1:1,41:42:99:1195,116,0 0/1:24,22:46:99:509,0,572 0/0:47,0:47:99:0,116,1338 0/1:21,26:47:99:621,0,459 1/1:0,46:46:99:1393,137,0 NW_016690335.1 1907473 . G A 2749.97 . 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AC=211;AF=0.129;AN=1630;BaseQRankSum=6.47;DP=39761;ExcessHet=0.0022;FS=0.000;InbreedingCoeff=0.1680;MLEAC=219;MLEAF=0.134;MQ=60.00;MQRankSum=0.00;QD=16.03;ReadPosRankSum=0.00;SOR=0.544 GT:AD:DP:GQ:PL 0/1:24,26:50:99:687,0,558 1/1:0,49:50:99:1600,147,0 1/1:0,50:50:99:1634,150,0 0/1:25,25:50:99:669,0,591 1/1:0,49:49:99:1591,147,0 1/1:0,50:50:99:1634,150,0 1/1:0,50:50:99:1661,150,0 0/0:49,0:49:99:0,120,1800 0/0:48,0:48:99:0,116,1393 0/1:17,33:50:99:920,0,373 0/1:26,24:50:99:609,0,609 0/0:50,0:50:99:0,120,1800 0/1:31,19:50:99:451,0,761 NW_016690336.1 2062615 . A G 122724 . 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AC=525;AF=0.341;AN=1540;BaseQRankSum=-6.648e+00;DP=37222;ExcessHet=-0.0000;FS=0.000;InbreedingCoeff=0.2694;MLEAC=597;MLEAF=0.388;MQ=60.00;MQRankSum=0.00;QD=9.13;ReadPosRankSum=0.00;SOR=0.625 GT:AD:DP:GQ:PGT:PID:PL:PS 0/0:51,0:51:99:.:.:0,120,1800:. 0/0:101,0:101:99:.:.:0,120,1800:. 1/1:0,51:51:99:.:.:485,130,0:. 1/1:0,49:49:99:.:.:466,125,0:. 0/1:34,16:50:9:.:.:9,0,859:. 0/0:50,0:50:99:.:.:0,118,1497:. 1/1:0,52:52:99:.:.:495,133,0:. 0/0:48,0:48:99:.:.:0,120,1800:. 1/1:1,50:51:99:.:.:446,101,0:. 1/1:0,49:49:99:.:.:466,125,0:. 1/1:1,48:49:97:.:.:428,97,0:. 1/1:0,51:51:99:.:.:485,130,0:. 1/1:0,49:49:99:.:.:466,125,0:. NW_016690337.1 1165471 . G A 337168 . 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AC=211;AF=0.129;AN=1634;BaseQRankSum=5.20;DP=39098;ExcessHet=0.4057;FS=0.000;InbreedingCoeff=0.0939;MLEAC=218;MLEAF=0.133;MQ=59.99;MQRankSum=0.00;QD=14.50;ReadPosRankSum=0.00;SOR=0.850 GT:AD:DP:GQ:PGT:PID:PL:PS 0/1:21,24:45:99:.:.:627,0,464:. 0/1:20,28:48:99:.:.:766,0,426:. 0/1:23,21:44:99:.:.:527,0,505:. 0/0:49,0:49:99:.:.:0,120,1259:. 0/1:29,20:49:99:.:.:464,0,689:. 0/0:45,0:45:99:.:.:0,106,1061:. 0/0:47,0:47:99:.:.:0,114,1304:. 0/1:26,25:51:99:.:.:661,0,656:. 0/0:47,0:47:99:.:.:0,110,1286:. 0/0:49,0:49:99:.:.:0,117,1279:. 0/0:47,0:47:99:.:.:0,120,1800:. 0/1:20,32:52:99:.:.:942,0,477:. 1/1:0,49:49:99:.:.:1682,147,0:. NW_016690338.1 888383 . C T 35735.5 . AC=56;AF=0.035;AN=1614;BaseQRankSum=5.61;DP=37704;ExcessHet=-0.0000;FS=7.873;InbreedingCoeff=0.5508;MLEAC=59;MLEAF=0.037;MQ=60.00;MQRankSum=0.00;QD=17.43;ReadPosRankSum=0.00;SOR=2.039 GT:AD:DP:GQ:PGT:PID:PL:PS 0/1:25,23:48:99:.:.:517,0,489:. 0/1:24,24:48:99:.:.:524,0,466:. 0/1:16,29:45:99:.:.:647,0,577:. 0/1:23,24:47:99:.:.:522,0,434:. 0/0:49,0:49:99:.:.:0,120,1800:. 0/0:48,0:48:99:.:.:0,120,1800:. 0/0:48,0:48:99:.:.:0,114,1076:. 0/0:47,0:47:99:.:.:0,120,1800:. 0/1:25,21:46:99:.:.:475,0,536:. 0/0:50,0:50:99:.:.:0,120,1800:. 0/0:47,0:47:99:.:.:0,120,1800:. 0/0:44,0:44:99:.:.:0,112,1261:. 0/0:50,0:50:99:.:.:0,112,1376:. NW_016690360.1 1133804 . C T 247216 . AC=346;AF=0.215;AN=1608;BaseQRankSum=5.63;DP=37952;ExcessHet=0.0000;FS=0.000;InbreedingCoeff=0.2420;MLEAC=361;MLEAF=0.225;MQ=60.00;MQRankSum=0.00;QD=19.14;ReadPosRankSum=0.00;SOR=1.588 GT:AD:DP:GQ:PGT:PID:PL:PS 0/0:47,0:47:99:.:.:0,120,1800:. 1/1:0,48:48:99:.:.:1662,144,0:. 1/1:0,48:48:99:.:.:1476,144,0:. 0/1:25,21:46:99:.:.:485,0,530:. 0/1:23,24:47:99:.:.:592,0,496:. 0/1:25,21:46:99:.:.:498,0,556:. 0/0:46,0:46:99:.:.:0,111,971:. 1/1:0,49:49:99:.:.:1486,147,0:. 0/1:19,31:50:99:.:.:828,0,391:. 0/1:23,25:48:99:.:.:617,0,517:. 0/1:26,21:47:99:.:.:500,0,603:. 1/1:0,49:49:99:.:.:1487,147,0:. 0/1:21,25:46:99:.:.:583,0,440:. NW_016690360.1 1513369 . T C 8373.03 . AC=13;AF=8.015e-03;AN=1622;BaseQRankSum=-4.959e+00;DP=38666;ExcessHet=0.0000;FS=3.693;InbreedingCoeff=0.5375;MLEAC=14;MLEAF=8.631e-03;MQ=59.98;MQRankSum=0.00;QD=14.17;ReadPosRankSum=0.00;SOR=1.152 GT:AD:DP:GQ:PGT:PID:PL:PS 0/0:50,0:50:99:.:.:0,120,1357:. 0/0:48,0:48:99:.:.:0,120,1272:. 0/0:46,0:46:99:.:.:0,120,1800:. 0/0:48,0:48:99:.:.:0,117,1280:. 0/0:47,0:47:99:.:.:0,120,1310:. 0/0:48,0:48:99:.:.:0,118,1373:. 0/0:49,0:49:99:.:.:0,107,1290:. 0/0:45,0:45:99:.:.:0,107,651:. 0/0:51,0:51:0:.:.:0,0,432:. 0|1:31,18:49:99:0|1:1513365_C_G:370,0,774:1513365 0/0:48,0:48:99:.:.:0,120,1800:. 0/1:32,18:50:99:.:.:325,0,796:. 1|1:0,49:49:99:1|1:1513365_C_G:2192,147,0:1513365 NW_016690339.1 29635 . C T 3651.61 . AC=7;AF=4.300e-03;AN=1628;BaseQRankSum=5.80;DP=38447;ExcessHet=0.0281;FS=0.000;InbreedingCoeff=0.5636;MLEAC=7;MLEAF=4.300e-03;MQ=60.00;MQRankSum=0.00;QD=12.77;ReadPosRankSum=0.00;SOR=0.842 GT:AD:DP:GQ:PL 0/0:48,0:48:99:0,102,1084 0/1:32,18:50:99:396,0,718 0/0:47,0:47:99:0,120,1800 0/0:47,0:47:99:0,117,1192 0/1:23,26:49:99:628,0,486 0/0:48,0:48:99:0,106,1350 0/0:49,0:49:99:0,109,1209 0/1:26,21:47:99:492,0,569 0/0:46,0:46:99:0,111,1258 0/1:31,17:48:99:334,0,749 1/1:0,43:43:99:1210,128,0 0/0:50,0:50:99:0,120,1800 0/0:50,0:50:99:0,120,1800 NW_016690339.1 809305 . A G 139321 . AC=314;AF=0.199;AN=1576;BaseQRankSum=-8.790e-01;DP=26284;ExcessHet=0.0000;FS=1.860;InbreedingCoeff=0.2901;MLEAC=338;MLEAF=0.214;MQ=60.00;MQRankSum=0.00;QD=17.13;ReadPosRankSum=0.00;SOR=0.252 GT:AD:DP:GQ:PGT:PID:PL:PS 0/0:49,0:49:84:.:.:0,84,1407:. 0/0:40,0:40:99:.:.:0,111,1046:. 0/0:48,0:48:99:.:.:0,120,1800:. 0/0:28,0:28:84:.:.:0,84,665:. 0/0:49,0:49:99:.:.:0,120,1800:. 0/1:23,25:48:99:.:.:609,0,570:. 0/1:21,15:36:99:.:.:336,0,527:. 1/1:0,25:25:75:.:.:728,75,0:. 0/1:8,12:20:99:.:.:282,0,188:. 0/0:25,0:25:75:.:.:0,75,612:. 0|1:13,13:26:99:0|1:809305_A_G:503,0,507:809305 0/0:50,0:50:99:.:.:0,120,1800:. 0/0:49,0:49:99:.:.:0,120,1800:. NW_016690340.1 290760 . G T 247359 . AC=394;AF=0.243;AN=1620;BaseQRankSum=-3.551e+00;DP=39441;ExcessHet=0.0000;FS=0.000;InbreedingCoeff=0.2055;MLEAC=410;MLEAF=0.253;MQ=60.00;MQRankSum=0.00;QD=16.01;ReadPosRankSum=0.00;SOR=1.898 GT:AD:DP:GQ:PGT:PID:PL:PS 1/1:0,48:48:99:.:.:1468,144,0:. 0/0:48,0:48:99:.:.:0,120,1800:. 0/0:49,0:49:99:.:.:0,118,1433:. 0/1:22,28:50:99:.:.:636,0,460:. 0/1:25,25:50:99:.:.:631,0,580:. 0/0:49,0:49:99:.:.:0,120,1800:. 0/1:23,27:50:99:.:.:614,0,502:. 1/1:0,50:50:99:.:.:1364,150,0:. 1/1:0,47:47:99:.:.:1249,140,0:. 1/1:0,47:47:99:.:.:1340,141,0:. 0/0:49,0:49:99:.:.:0,120,1800:. 1/1:0,48:48:99:.:.:1355,144,0:. 1/1:1,46:47:99:.:.:1281,131,0:. NW_016690341.1 1162796 . C T 3530.23 . AC=5;AF=3.075e-03;AN=1626;BaseQRankSum=6.30;DP=39029;ExcessHet=0.0000;FS=0.000;InbreedingCoeff=0.6669;MLEAC=5;MLEAF=3.075e-03;MQ=60.00;MQRankSum=0.00;QD=24.52;ReadPosRankSum=0.00;SOR=3.321 GT:AD:DP:GQ:PL 0/0:48,0:48:99:0,120,1800 0/0:45,0:45:99:0,110,1234 1/1:0,48:49:99:1492,144,0 0/1:23,27:50:99:682,0,511 0/0:50,0:50:99:0,120,1800 1/1:0,46:47:99:1478,138,0 0/0:49,0:49:99:0,120,1800 0/0:50,0:50:99:0,120,1800 0/0:45,0:45:99:0,112,1221 0/0:47,0:47:99:0,119,1255 0/0:45,0:45:99:0,120,1800 0/0:48,0:48:99:0,118,1230 0/0:47,0:47:99:0,118,1224 NW_016690342.1 368852 . T C 7424.74 . AC=10;AF=6.143e-03;AN=1628;BaseQRankSum=-5.985e+00;DP=40204;ExcessHet=0.0605;FS=0.000;InbreedingCoeff=0.5164;MLEAC=10;MLEAF=6.143e-03;MQ=60.00;MQRankSum=0.00;QD=16.18;ReadPosRankSum=0.614;SOR=0.805 GT:AD:DP:GQ:PGT:PID:PL:PS 0/0:50,0:50:99:.:.:0,120,1800:. 0/0:47,0:47:99:.:.:0,120,1800:. 0/0:49,0:49:99:.:.:0,116,1384:. 0/0:49,0:49:99:.:.:0,120,1800:. 0/0:47,0:47:99:.:.:0,105,1085:. 0/0:93,0:93:99:.:.:0,120,1800:. 0/0:49,0:49:99:.:.:0,120,1800:. 0/1:22,29:51:99:.:.:698,0,513:. 0/0:51,0:51:99:.:.:0,111,1299:. 0/1:22,28:50:99:.:.:651,0,524:. 0/1:24,31:55:99:.:.:757,0,540:. 0/0:50,0:50:99:.:.:0,120,1800:. 0/0:50,0:50:99:.:.:0,117,1359:. NW_016690342.1 624116 . A T 3706.82 . AC=7;AF=4.310e-03;AN=1624;BaseQRankSum=6.26;DP=36849;ExcessHet=0.0282;FS=0.000;InbreedingCoeff=0.5606;MLEAC=7;MLEAF=4.310e-03;MQ=60.00;MQRankSum=0.00;QD=13.14;ReadPosRankSum=0.00;SOR=0.910 GT:AD:DP:GQ:PL 0/0:47,0:47:99:0,116,1290 0/1:27,22:49:99:508,0,606 0/0:46,0:46:99:0,120,1800 0/0:47,0:47:99:0,120,1800 0/0:45,0:45:99:0,120,1800 0/0:43,0:43:99:0,100,1180 0/0:45,0:45:99:0,120,1165 0/0:46,0:46:99:0,110,995 0/0:41,0:41:99:0,110,1139 0/1:26,21:47:99:482,0,577 0/1:20,29:49:99:709,0,406 0/0:48,0:48:99:0,120,1800 0/0:44,0:44:99:0,120,1800 NW_016690342.1 718752 . G A 2634.04 . AC=4;AF=2.494e-03;AN=1604;BaseQRankSum=6.33;DP=38646;ExcessHet=0.0081;FS=0.000;InbreedingCoeff=0.5889;MLEAC=4;MLEAF=2.494e-03;MQ=60.00;MQRankSum=0.00;QD=17.68;ReadPosRankSum=0.00;SOR=1.989 GT:AD:DP:GQ:PL 0/0:51,0:51:99:0,120,1800 0/0:50,0:50:99:0,120,1800 1/1:0,50:50:99:1416,150,0 0/0:49,0:49:99:0,120,1800 0/0:50,0:50:99:0,120,1800 0/1:20,30:50:99:692,0,348 0/0:49,0:49:99:0,120,1800 0/0:50,0:50:99:0,120,1800 0/0:49,0:49:99:0,120,1286 0/0:49,0:49:99:0,120,1800 0/0:49,0:49:99:0,120,1800 0/0:48,0:48:99:0,120,1800 0/0:50,0:50:99:0,120,1264 NW_016690343.1 1362576 . G T 5268.47 . AC=8;AF=4.950e-03;AN=1616;BaseQRankSum=6.64;DP=39338;ExcessHet=0.0002;FS=0.000;InbreedingCoeff=0.5905;MLEAC=8;MLEAF=4.950e-03;MQ=60.00;MQRankSum=0.00;QD=17.92;ReadPosRankSum=0.00;SOR=1.553 GT:AD:DP:GQ:PL 0/0:44,0:44:99:0,118,1191 0/0:47,0:47:99:0,117,1175 0/0:50,0:50:99:0,120,1800 0/1:22,26:48:99:655,0,484 0/0:49,0:49:99:0,120,1800 0/0:50,0:50:99:0,120,1800 0/0:50,0:50:99:0,120,1800 1/1:0,48:48:99:1474,144,0 0/0:49,0:49:99:0,120,1800 0/1:29,21:50:99:538,0,1155 1/1:0,50:50:99:1554,150,0 0/0:49,0:49:99:0,120,1800 0/0:50,0:50:99:0,120,1800 NW_016690344.1 1620404 . C T 199404 . AC=321;AF=0.197;AN=1630;BaseQRankSum=5.97;DP=39786;ExcessHet=0.0000;FS=1.488;InbreedingCoeff=0.4737;MLEAC=331;MLEAF=0.203;MQ=59.99;MQRankSum=0.00;QD=17.30;ReadPosRankSum=0.00;SOR=0.991 GT:AD:DP:GQ:PGT:PID:PL:PS 0/1:31,27:58:99:.:.:580,0,633:. 0/1:29,23:52:99:.:.:463,0,593:. 0/1:25,26:51:99:.:.:590,0,515:. 1/1:1,48:49:99:.:.:1325,121,0:. 1/1:0,54:54:99:.:.:1474,162,0:. 1/1:0,53:53:99:.:.:1468,159,0:. 1/1:0,48:48:99:.:.:1273,144,0:. 0/0:48,0:48:99:.:.:0,104,1240:. 0/0:49,0:49:99:.:.:0,120,1800:. 0/1:28,24:52:99:.:.:480,0,521:. 1/1:0,47:47:99:.:.:1252,141,0:. 0/1:31,22:53:99:.:.:429,0,611:. 0/0:49,0:49:99:.:.:0,120,1800:. NW_016690346.1 287445 . G A 129105 . AC=190;AF=0.117;AN=1624;BaseQRankSum=0.991;DP=40404;ExcessHet=0.0000;FS=0.000;InbreedingCoeff=0.2764;MLEAC=198;MLEAF=0.122;MQ=59.99;MQRankSum=0.00;QD=16.35;ReadPosRankSum=0.00;SOR=0.847 GT:AD:DP:GQ:PL 0/1:22,25:47:99:578,0,463 0/0:53,0:53:99:0,120,1800 0/1:15,34:49:99:833,0,266 0/0:49,0:49:99:0,119,1331 0/0:49,0:49:99:0,119,1571 0/0:53,0:53:99:0,120,1800 0/1:32,18:50:99:368,0,716 0/0:49,0:49:99:0,120,1800 1/1:0,49:49:99:1435,147,0 0/0:52,0:52:99:0,120,1800 0/1:27,22:49:99:466,0,1068 0/1:32,19:51:99:410,0,763 0/1:24,25:49:99:570,0,520 NW_016690346.1 409433 . C T 16626.1 . AC=27;AF=0.017;AN=1634;BaseQRankSum=4.34;DP=38630;ExcessHet=-0.0000;FS=0.000;InbreedingCoeff=0.6641;MLEAC=28;MLEAF=0.017;MQ=60.00;MQRankSum=0.00;QD=21.05;ReadPosRankSum=0.00;SOR=2.839 GT:AD:DP:GQ:PGT:PID:PL:PS 1/1:2,44:46:81:.:.:1192,81,0:. 1/1:0,46:46:99:.:.:1281,137,0:. 0/1:25,25:50:99:.:.:537,0,495:. 0/1:11,32:43:99:.:.:817,0,172:. 1/1:0,50:50:99:.:.:1366,149,0:. 1/1:0,49:49:99:.:.:1381,147,0:. 0/0:49,0:49:99:.:.:0,108,1229:. 0/0:49,0:49:0:.:.:0,0,181:. 0/1:20,27:47:99:.:.:616,0,392:. 1|1:0,45:45:99:1|1:409431_C_T:1612,135,0:409431 0/1:22,24:46:99:.:.:548,0,454:. 0/0:48,0:48:99:.:.:0,113,1247:. 1/1:0,46:46:99:.:.:1293,137,0:. NW_016690346.1 1084042 . C T 56713.5 . AC=84;AF=0.051;AN=1638;BaseQRankSum=5.68;DP=40162;ExcessHet=0.0000;FS=4.160;InbreedingCoeff=0.4233;MLEAC=87;MLEAF=0.053;MQ=60.00;MQRankSum=0.00;QD=15.57;ReadPosRankSum=0.00;SOR=1.556 GT:AD:DP:GQ:PGT:PID:PL:PS 0/0:49,0:49:99:.:.:0,120,1800:. 0/0:49,0:49:99:.:.:0,120,1800:. 0/0:50,0:50:99:.:.:0,120,1800:. 0/0:49,0:49:99:.:.:0,120,1182:. 0/1:30,20:50:99:.:.:392,0,580:. 0/0:47,0:47:99:.:.:0,106,1340:. 0/0:50,0:50:99:.:.:0,120,1800:. 0/1:24,25:49:99:.:.:545,0,468:. 0/0:49,0:49:99:.:.:0,120,1800:. 0|1:37,13:50:99:0|1:1084042_C_T:434,0,1514:1084042 1/1:0,50:50:99:.:.:1359,150,0:. 0/0:48,0:48:99:.:.:0,116,1204:. 0/0:49,0:49:99:.:.:0,119,1395:. NW_016690346.1 1884071 . T C 7239.45 . AC=7;AF=4.289e-03;AN=1632;BaseQRankSum=-5.005e+00;DP=39393;ExcessHet=0.0280;FS=0.000;InbreedingCoeff=0.5582;MLEAC=7;MLEAF=4.289e-03;MQ=60.00;MQRankSum=0.00;QD=23.58;ReadPosRankSum=0.057;SOR=1.134 GT:AD:DP:GQ:PGT:PID:PL:PS 0|1:25,25:50:99:0|1:1884071_T_C:957,0,974:1884071 0/0:49,0:49:99:.:.:0,120,1800:. 1|1:0,47:47:99:1|1:1884071_T_C:2115,141,0:1884071 0/0:48,0:48:99:.:.:0,120,1800:. 0|1:25,30:55:99:0|1:1884071_T_C:1184,0,935:1884071 0/0:47,0:47:99:.:.:0,120,1800:. 0/0:49,0:49:99:.:.:0,120,1800:. 0/0:49,0:49:99:.:.:0,120,1800:. 0/0:49,0:49:99:.:.:0,120,1800:. 0/0:50,0:50:99:.:.:0,120,1800:. 0/0:47,0:47:99:.:.:0,120,1800:. 0/0:48,0:48:99:.:.:0,120,1800:. 0/0:51,0:51:99:.:.:0,120,1800:. NW_016690347.1 345968 . A G 1933.44 . AC=14;AF=8.805e-03;AN=1590;BaseQRankSum=-6.515e+00;DP=29875;ExcessHet=0.0000;FS=0.000;InbreedingCoeff=0.5054;MLEAC=15;MLEAF=9.434e-03;MQ=60.00;MQRankSum=0.00;QD=3.60;ReadPosRankSum=0.00;SOR=1.426 GT:AD:DP:GQ:PL 0/1:21,29:50:99:139,0,528 1/1:0,47:47:99:447,120,0 0/1:25,23:48:85:85,0,654 0/1:17,31:48:99:165,0,410 0/1:27,22:49:72:72,0,717 0/0:49,0:49:99:0,120,1800 0/0:49,0:49:99:0,120,1800 0/0:25,0:25:72:0,72,546 0/0:51,0:51:99:0,120,1800 0/1:27,22:49:72:72,0,713 0/0:49,0:49:99:0,120,1800 0/0:49,0:49:99:0,118,1276 0/0:48,0:48:99:0,120,1800 NW_016690348.1 943355 . T A 3998.36 . AC=8;AF=4.890e-03;AN=1636;BaseQRankSum=-5.243e+00;DP=39807;ExcessHet=0.0373;FS=0.000;InbreedingCoeff=0.5435;MLEAC=8;MLEAF=4.890e-03;MQ=60.00;MQRankSum=0.00;QD=11.73;ReadPosRankSum=0.00;SOR=0.905 GT:AD:DP:GQ:PL 0/1:25,25:50:99:527,0,587 0/0:51,0:51:99:0,120,1800 1/1:0,49:49:99:1309,146,0 0/0:49,0:49:99:0,120,1800 0/0:49,0:49:99:0,120,1800 0/0:48,0:48:99:0,112,1493 0/0:50,0:50:99:0,120,1312 0/0:49,0:49:99:0,120,1800 0/0:48,0:48:99:0,120,1800 0/0:51,0:51:99:0,120,1800 0/0:49,0:49:99:0,106,1337 0/0:54,0:54:99:0,120,1800 0/0:50,0:50:99:0,113,1426 NW_016690349.1 152005 . T C 345.31 . AC=4;AF=2.454e-03;AN=1630;BaseQRankSum=-6.486e+00;DP=42718;ExcessHet=3.0263;FS=0.000;InbreedingCoeff=0.5454;MLEAC=4;MLEAF=2.454e-03;MQ=60.00;MQRankSum=0.00;QD=1.73;ReadPosRankSum=0.00;SOR=0.786 GT:AD:DP:GQ:PL 0/0:53,0:53:99:0,114,1532 0/0:53,0:53:99:0,115,1398 0/0:49,0:49:99:0,116,1480 0/0:51,0:51:99:0,120,1800 0/0:49,0:49:99:0,120,1800 0/0:45,0:45:99:0,116,1149 0/0:52,0:52:99:0,120,1800 0/0:50,0:50:99:0,118,1361 0/1:27,24:51:87:87,0,578 0/1:25,25:50:99:99,0,575 0/0:52,0:52:99:0,120,1800 0/1:22,28:51:99:129,0,469 0/1:22,27:49:99:122,0,516 NW_016690349.1 485705 . G A 154536 . AC=236;AF=0.144;AN=1636;BaseQRankSum=6.53;DP=39457;ExcessHet=0.0002;FS=2.933;InbreedingCoeff=0.1840;MLEAC=243;MLEAF=0.149;MQ=59.99;MQRankSum=0.00;QD=15.24;ReadPosRankSum=0.00;SOR=0.013 GT:AD:DP:GQ:PGT:PID:PL:PS 0/0:49,0:49:99:.:.:0,116,808:. 0/0:50,0:50:99:.:.:0,119,1284:. 0/0:49,0:49:99:.:.:0,116,1431:. 0/0:48,0:48:99:.:.:0,120,1800:. 0|1:21,30:51:99:0|1:485705_G_A:1048,0,600:485705 0/1:22,27:49:72:.:.:689,0,72:. 0/0:49,0:49:99:.:.:0,120,1800:. 0/0:47,0:47:99:.:.:0,116,848:. 0/1:26,22:48:99:.:.:519,0,115:. 0/0:49,0:49:99:.:.:0,118,1646:. 0/0:48,0:48:99:.:.:0,120,1800:. 0/1:25,27:52:93:.:.:641,0,93:. 0/1:20,29:49:52:.:.:714,0,52:. NW_016690349.1 691590 . C T 39466 . AC=67;AF=0.041;AN=1618;BaseQRankSum=5.54;DP=37307;ExcessHet=-0.0000;FS=0.000;InbreedingCoeff=0.5143;MLEAC=68;MLEAF=0.042;MQ=60.00;MQRankSum=0.00;QD=18.35;ReadPosRankSum=0.00;SOR=0.283 GT:AD:DP:GQ:PGT:PID:PL:PS 0/0:43,0:43:99:.:.:0,106,737:. 0/1:26,22:48:99:.:.:486,0,543:. 0/1:25,18:43:99:.:.:382,0,537:. 0/0:49,0:49:99:.:.:0,120,1800:. 0/0:48,0:48:99:.:.:0,116,1203:. 0/1:22,20:42:99:.:.:431,0,462:. 0/1:24,25:49:99:.:.:554,0,512:. 1/1:0,49:49:99:.:.:1377,147,0:. 0/0:46,0:46:99:.:.:0,108,1130:. 1/1:0,42:42:99:.:.:1223,126,0:. 1/1:0,41:41:99:.:.:1159,123,0:. 0/1:17,27:44:99:.:.:636,0,322:. 0/1:24,22:46:99:.:.:491,0,486:. NW_016690349.1 1651636 . G A 971959 . 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AC=129;AF=0.081;AN=1594;BaseQRankSum=5.16;DP=40044;ExcessHet=0.0000;FS=0.000;InbreedingCoeff=0.2649;MLEAC=135;MLEAF=0.085;MQ=59.99;MQRankSum=0.00;QD=14.44;ReadPosRankSum=0.00;SOR=0.665 GT:AD:DP:GQ:PL 0/1:26,28:54:99:692,0,585 1/1:0,50:51:99:1519,150,0 0/1:30,22:52:99:515,0,715 0/0:53,0:53:99:0,99,1320 0/0:51,0:51:99:0,120,1800 0/0:56,0:56:99:0,120,1800 0/0:50,0:50:99:0,120,1800 0/0:50,0:50:99:0,107,1440 0/0:50,0:50:99:0,120,1800 0/0:47,0:47:99:0,116,1271 0/0:50,0:50:99:0,120,1800 0/0:52,0:52:99:0,120,1800 0/0:54,0:54:99:0,120,1800 NW_016690350.1 1638359 . T C 861.13 . AC=6;AF=3.672e-03;AN=1634;BaseQRankSum=-6.389e+00;DP=39797;ExcessHet=0.0201;FS=0.000;InbreedingCoeff=0.5413;MLEAC=6;MLEAF=3.672e-03;MQ=60.00;MQRankSum=0.00;QD=3.56;ReadPosRankSum=0.00;SOR=0.890 GT:AD:DP:GQ:PL 0/1:28,21:49:99:317,0,626 0/0:47,0:47:99:0,115,753 0/0:50,0:50:99:0,115,1455 0/0:48,0:48:99:0,109,1098 1/1:0,48:48:99:484,123,0 0/0:49,0:49:99:0,120,1800 0/1:28,19:47:49:49,0,604 0/0:50,0:50:99:0,120,1800 0/0:49,0:49:99:0,120,1800 0/0:50,0:50:99:0,120,1800 0/0:50,0:50:99:0,120,1800 0/0:48,0:48:99:0,119,1341 0/0:49,0:49:99:0,119,1293 NW_016690350.1 1919879 . A G 1592.53 . AC=12;AF=7.407e-03;AN=1620;BaseQRankSum=-6.558e+00;DP=39268;ExcessHet=0.0000;FS=0.000;InbreedingCoeff=0.5540;MLEAC=13;MLEAF=8.025e-03;MQ=60.00;MQRankSum=0.00;QD=3.61;ReadPosRankSum=0.00;SOR=1.403 GT:AD:DP:GQ:PL 0/0:50,0:50:99:0,120,1800 0/1:27,21:48:65:65,0,613 0/0:49,0:49:99:0,120,1800 0/0:49,0:49:99:0,120,1800 0/0:49,0:49:99:0,120,1800 0/0:50,0:50:99:0,120,1800 0/1:24,26:50:99:109,0,529 0/1:30,19:49:42:42,0,722 0/1:29,19:48:45:45,0,684 1/1:0,49:49:99:466,125,0 0/1:28,21:49:62:62,0,669 1/1:0,50:50:99:476,127,0 1/1:1,49:50:99:437,99,0 NW_016690350.1 2032362 . A G 224723 . AC=324;AF=0.198;AN=1636;BaseQRankSum=-5.153e+00;DP=39112;ExcessHet=0.0000;FS=0.000;InbreedingCoeff=0.1987;MLEAC=336;MLEAF=0.205;MQ=60.00;MQRankSum=0.00;QD=16.99;ReadPosRankSum=0.00;SOR=1.301 GT:AD:DP:GQ:PGT:PID:PL:PS 0/1:26,23:49:99:.:.:882,0,1011:. 1/1:0,49:49:99:.:.:1268,145,0:. 1/1:0,50:50:99:.:.:1675,148,0:. 0/0:50,0:50:99:.:.:0,120,1800:. 0/0:49,0:49:99:.:.:0,120,1800:. 0/0:51,0:51:99:.:.:0,120,1800:. 0/0:49,0:49:99:.:.:0,120,1800:. 0/1:13,33:46:99:.:.:694,0,254:. 0|1:25,26:51:99:0|1:2032359_C_T:1009,0,820:2032359 0/1:32,19:51:99:.:.:334,0,771:. 0/0:49,0:49:99:.:.:0,114,1340:. 1/1:0,49:49:99:.:.:1737,147,0:. 1|1:0,49:49:99:1|1:2032359_C_T:2171,147,0:2032359 NW_016690351.1 145814 . G A 47765.6 . AC=76;AF=0.047;AN=1626;BaseQRankSum=6.74;DP=38897;ExcessHet=0.0000;FS=0.000;InbreedingCoeff=0.4261;MLEAC=77;MLEAF=0.047;MQ=60.00;MQRankSum=0.00;QD=16.25;ReadPosRankSum=0.00;SOR=0.543 GT:AD:DP:GQ:PGT:PID:PL:PS 1|1:3,43:46:3:1|1:145813_C_T:1215,3,0:145813 0/0:15,0:15:45:.:.:0,45,317:. 1/1:0,50:50:99:.:.:1536,150,0:. 1/1:2,45:47:99:.:.:1364,121,0:. 0/0:22,0:22:66:.:.:0,66,481:. 1/1:4,46:50:99:.:.:1419,110,0:. 0/0:19,0:19:56:.:.:0,56,358:. 1/1:0,48:48:99:.:.:1422,144,0:. 1/1:0,50:50:99:.:.:1449,150,0:. 1/1:0,45:45:99:.:.:1313,135,0:. 0/1:4,45:49:33:.:.:1231,0,33:. 0/0:49,0:49:99:.:.:0,120,1800:. 1/1:0,50:50:99:.:.:1486,150,0:. NW_016690351.1 396495 . T C 140881 . AC=143;AF=0.087;AN=1636;BaseQRankSum=-6.541e+00;DP=40617;ExcessHet=0.0000;FS=1.549;InbreedingCoeff=0.2610;MLEAC=148;MLEAF=0.090;MQ=60.00;MQRankSum=0.00;QD=22.36;ReadPosRankSum=0.00;SOR=1.092 GT:AD:DP:GQ:PGT:PID:PL:PS 0|1:15,35:50:99:0|1:396495_T_C:1412,0,524:396495 0/0:51,0:51:99:.:.:0,120,1800:. 0/0:50,0:50:99:.:.:0,99,1485:. 0|1:26,22:48:99:0|1:396495_T_C:846,0,1026:396495 0/0:50,0:50:99:.:.:0,120,1800:. 0|1:27,22:49:99:0|1:396495_T_C:831,0,1068:396495 0/0:47,0:47:99:.:.:0,120,1800:. 0/0:50,0:50:99:.:.:0,120,1800:. 0/0:50,0:50:99:.:.:0,120,1800:. 0/0:48,0:48:99:.:.:0,120,1800:. 0|1:49,50:99:99:0|1:396495_T_C:1952,0,1901:396495 1|1:0,58:58:99:1|1:396495_T_C:2575,175,0:396495 0/0:49,0:49:99:.:.:0,119,1509:. NW_016690351.1 1320456 . T A 2096.4 . AC=3;AF=1.838e-03;AN=1632;BaseQRankSum=6.57;DP=47797;ExcessHet=0.0040;FS=0.000;InbreedingCoeff=0.6442;MLEAC=3;MLEAF=1.838e-03;MQ=60.00;MQRankSum=0.00;QD=19.23;ReadPosRankSum=2.62;SOR=1.885 GT:AD:DP:GQ:PL 0/0:88,0:88:99:0,120,1800 0/0:49,0:49:99:0,120,1800 0/0:53,0:53:99:0,120,1800 1/1:0,48:48:99:1471,144,0 0/0:60,0:60:99:0,120,1800 0/0:45,0:45:99:0,120,1800 0/1:32,29:61:99:704,0,748 0/0:48,0:48:99:0,120,1800 0/0:72,0:72:99:0,120,1800 0/0:81,0:81:99:0,120,1800 0/0:63,0:63:99:0,120,1800 0/0:69,0:69:99:0,120,1800 0/0:56,0:56:99:0,120,1800 NW_016690351.1 1716409 . G A 9048.95 . AC=12;AF=7.326e-03;AN=1638;BaseQRankSum=6.86;DP=40885;ExcessHet=0.0000;FS=0.000;InbreedingCoeff=0.6688;MLEAC=12;MLEAF=7.326e-03;MQ=60.00;MQRankSum=0.00;QD=25.14;ReadPosRankSum=0.00;SOR=3.733 GT:AD:DP:GQ:PL 1/1:0,51:51:99:1599,153,0 0/1:26,26:52:99:619,0,566 1/1:0,53:53:99:1632,159,0 0/0:49,0:49:99:0,120,1800 0/0:48,0:48:99:0,120,1800 0/0:49,0:49:99:0,116,1293 0/0:51,0:51:99:0,120,1800 0/0:47,0:47:99:0,120,1800 0/0:50,0:50:99:0,120,1800 0/0:51,0:51:99:0,120,1800 0/0:50,0:50:99:0,120,1800 0/0:52,0:52:99:0,120,1800 0/0:48,0:48:99:0,101,1403 NW_016690352.1 351293 . C T 111778 . AC=129;AF=0.079;AN=1634;BaseQRankSum=4.78;DP=39008;ExcessHet=-0.0000;FS=6.113;InbreedingCoeff=0.5331;MLEAC=133;MLEAF=0.081;MQ=59.99;MQRankSum=0.00;QD=23.24;ReadPosRankSum=0.00;SOR=2.274 GT:AD:DP:GQ:PGT:PID:PL:PS 0/0:58,0:58:94:.:.:0,94,1454:. 1|1:0,50:50:99:1|1:351281_A_G:2245,151,0:351281 0/0:46,0:46:99:.:.:0,102,1344:. 0|1:27,24:51:99:0|1:351281_A_G:926,0,1046:351281 1|1:0,50:50:99:1|1:351281_A_G:2241,151,0:351281 0|1:30,21:51:99:0|1:351281_A_G:777,0,1196:351281 1|1:0,48:48:99:1|1:351281_A_G:2143,144,0:351281 1|1:0,50:50:99:1|1:351281_A_G:2241,151,0:351281 1|1:0,50:50:99:1|1:351281_A_G:2232,151,0:351281 0/0:50,0:50:99:.:.:0,102,1421:. 0/0:48,0:48:99:.:.:0,120,1800:. 0|1:33,22:55:99:0|1:351272_C_T:820,0,1319:351272 0/0:47,0:47:99:.:.:0,120,1505:. NW_016690352.1 1931461 . C T 46104.7 . AC=61;AF=0.039;AN=1582;BaseQRankSum=6.44;DP=35642;ExcessHet=-0.0000;FS=0.000;InbreedingCoeff=0.7726;MLEAC=66;MLEAF=0.042;MQ=60.00;MQRankSum=0.00;QD=32.93;ReadPosRankSum=0.00;SOR=6.516 GT:AD:DP:GQ:PGT:PID:PL:PS 1/1:0,49:49:99:.:.:1333,147,0:. 0/1:24,23:47:99:.:.:497,0,939:. 0/1:23,24:47:99:.:.:543,0,894:. 1/1:0,48:48:99:.:.:1319,144,0:. 1/1:0,49:49:99:.:.:1277,146,0:. 1/1:0,48:48:99:.:.:1279,144,0:. 0/0:36,0:36:99:.:.:0,108,800:. 1/1:0,48:48:99:.:.:1369,144,0:. 1/1:0,47:47:99:.:.:1283,141,0:. 1/1:0,39:39:99:.:.:1070,117,0:. 1/1:0,35:35:99:.:.:928,104,0:. 1/1:0,37:38:99:.:.:1024,111,0:. 1/1:0,39:39:99:.:.:1058,117,0:. NW_016690353.1 1203941 . G A 69086.2 . AC=113;AF=0.071;AN=1592;BaseQRankSum=6.55;DP=37822;ExcessHet=0.0000;FS=0.000;InbreedingCoeff=0.3621;MLEAC=119;MLEAF=0.075;MQ=60.00;MQRankSum=0.00;QD=15.69;ReadPosRankSum=0.00;SOR=1.367 GT:AD:DP:GQ:PGT:PID:PL:PS 0/1:28,21:50:99:.:.:482,0,628:. 1/1:0,48:48:99:.:.:1379,144,0:. 1/1:0,48:48:99:.:.:1377,144,0:. 0/0:49,0:49:99:.:.:0,120,1800:. 0/1:21,29:50:99:.:.:612,0,355:. 1/1:0,49:49:99:.:.:1381,147,0:. 0/1:22,28:50:99:.:.:628,0,820:. 0/1:18,20:38:99:.:.:481,0,366:. 0/0:50,0:50:99:.:.:0,120,1800:. 0/1:25,23:48:99:.:.:516,0,497:. 0/0:49,0:49:99:.:.:0,120,1800:. 0/1:28,20:49:99:.:.:448,0,605:. 0/0:50,0:50:99:.:.:0,120,1800:. NW_016690353.1 1779001 . A G 21539.7 . AC=163;AF=0.101;AN=1618;BaseQRankSum=-6.730e+00;DP=39707;ExcessHet=0.0000;FS=0.000;InbreedingCoeff=0.2836;MLEAC=170;MLEAF=0.105;MQ=60.00;MQRankSum=0.00;QD=3.24;ReadPosRankSum=0.00;SOR=1.109 GT:AD:DP:GQ:PL 0/0:48,0:48:99:0,120,1800 0/1:22,27:49:99:122,0,479 0/0:51,0:51:99:0,120,1800 0/1:18,31:49:99:162,0,669 0/0:51,0:51:99:0,102,1339 0/1:24,26:50:99:109,0,551 0/0:49,0:49:99:0,120,1800 0/1:23,27:50:99:119,0,485 0/0:52,0:52:99:0,120,1800 0/0:57,0:57:99:0,120,1800 1/1:0,50:50:99:476,127,0 0/0:50,0:50:99:0,113,1351 0/1:26,24:50:89:89,0,580 NW_016690354.1 789783 . A T 202778 . AC=275;AF=0.171;AN=1612;BaseQRankSum=-6.276e+00;DP=38897;ExcessHet=0.0000;FS=1.871;InbreedingCoeff=0.2305;MLEAC=290;MLEAF=0.180;MQ=60.00;MQRankSum=0.00;QD=17.69;ReadPosRankSum=0.00;SOR=0.230 GT:AD:DP:GQ:PGT:PID:PL:PS 0/0:50,0:50:99:.:.:0,120,1800:. 0/1:25,25:50:99:.:.:568,0,642:. 0/0:50,0:50:99:.:.:0,120,1800:. 1/1:0,50:50:99:.:.:1438,150,0:. 0/1:26,23:49:99:.:.:492,0,629:. 1/1:0,50:50:99:.:.:1388,150,0:. 0/1:24,25:49:99:.:.:545,0,546:. 0/1:21,28:50:99:.:.:602,0,457:. 0/1:23,27:50:99:.:.:599,0,557:. 1/1:0,49:50:99:.:.:1352,147,0:. 0/1:24,26:50:99:.:.:539,0,562:. 0/1:27,23:50:99:.:.:486,0,680:. 0/0:49,0:49:99:.:.:0,120,1800:. NW_016690354.1 1324370 . T G 144069 . AC=244;AF=0.150;AN=1628;BaseQRankSum=1.52;DP=38522;ExcessHet=0.0001;FS=0.000;InbreedingCoeff=0.1867;MLEAC=252;MLEAF=0.155;MQ=60.00;MQRankSum=0.00;QD=14.57;ReadPosRankSum=0.00;SOR=0.371 GT:AD:DP:GQ:PGT:PID:PL:PS 0/0:50,0:50:99:.:.:0,112,1325:. 0/0:49,0:49:99:.:.:0,120,1800:. 0|1:18,32:50:99:0|1:1324370_T_G:764,0,660:1324370 0/0:49,0:49:99:.:.:0,120,1800:. 0/0:49,0:49:99:.:.:0,120,1800:. 0/0:50,0:50:99:.:.:0,118,1323:. 0/0:50,0:50:99:.:.:0,120,1800:. 1/1:0,48:48:99:.:.:1377,144,0:. 1/1:0,47:47:99:.:.:1340,141,0:. 0/0:50,0:50:99:.:.:0,120,1800:. 0/0:49,0:49:99:.:.:0,120,1800:. 1/1:0,50:50:99:.:.:1370,150,0:. 0|1:28,19:47:99:0|1:1324370_T_G:386,0,1106:1324370 NW_016690354.1 1991674 . T C 65664.2 . AC=119;AF=0.073;AN=1620;BaseQRankSum=-5.440e+00;DP=39036;ExcessHet=0.0000;FS=0.000;InbreedingCoeff=0.4122;MLEAC=123;MLEAF=0.076;MQ=60.00;MQRankSum=0.00;QD=14.61;ReadPosRankSum=0.00;SOR=0.282 GT:AD:DP:GQ:PGT:PID:PL:PS 1|1:0,49:49:99:1|1:1991666_C_G:2205,147,0:1991666 1|1:1,49:50:99:1|1:1991666_C_G:2180,126,0:1991666 1|1:0,49:49:99:1|1:1991666_C_G:2205,147,0:1991666 1|1:2,48:50:73:1|1:1991666_C_G:2057,73,0:1991666 0/0:49,0:49:99:.:.:0,120,1800:. 1|1:0,50:50:99:1|1:1991666_C_G:2250,151,0:1991666 0|1:44,6:50:99:0|1:1991666_C_G:110,0,1778:1991666 0/0:50,0:50:99:.:.:0,120,1544:. 0/0:49,0:49:99:.:.:0,120,1800:. 0/0:49,0:49:99:.:.:0,120,1800:. 1|1:0,34:34:99:1|1:1991666_C_G:1530,102,0:1991666 1|1:0,19:19:57:1|1:1991666_C_G:855,57,0:1991666 0|0:47,3:50:16:0|1:1991666_C_G:0,16,1967:1991666 NW_016690355.1 502231 . C T 4434.42 . AC=4;AF=2.451e-03;AN=1632;DP=40001;ExcessHet=0.0000;FS=0.000;InbreedingCoeff=0.6278;MLEAC=4;MLEAF=2.451e-03;MQ=60.00;QD=31.85;SOR=9.250 GT:AD:DP:GQ:PGT:PID:PL:PS 0/0:51,0:51:99:.:.:0,120,1800:. 0/0:48,0:48:99:.:.:0,120,1800:. 0/0:51,0:51:0:.:.:0,0,238:. 0/0:51,0:51:99:.:.:0,120,1800:. 0/0:51,0:51:99:.:.:0,120,1800:. 1|1:0,51:51:99:1|1:502210_G_A:2288,154,0:502210 0/0:51,0:51:0:.:.:0,0,306:. 1|1:0,50:50:99:1|1:502210_G_A:2250,151,0:502210 0/0:52,0:52:0:.:.:0,0,305:. 0/0:50,0:50:99:.:.:0,120,1800:. 0/0:49,0:49:99:.:.:0,120,1800:. 0/0:50,0:50:99:.:.:0,120,1800:. 0/0:51,0:51:0:.:.:0,0,79:. NW_016690355.1 708190 . G A 114221 . AC=177;AF=0.109;AN=1618;BaseQRankSum=6.69;DP=39243;ExcessHet=0.1490;FS=0.000;InbreedingCoeff=0.1382;MLEAC=185;MLEAF=0.114;MQ=60.00;MQRankSum=0.00;QD=14.12;ReadPosRankSum=0.00;SOR=0.644 GT:AD:DP:GQ:PGT:PID:PL:PS 0/1:29,20:49:99:.:.:468,0,657:. 0/1:26,24:50:99:.:.:610,0,595:. 0/1:29,20:49:99:.:.:467,0,651:. 1/1:0,50:50:99:.:.:1538,150,0:. 0/1:20,29:49:99:.:.:745,0,408:. 0/0:49,0:49:99:.:.:0,118,1315:. 0/0:50,0:50:99:.:.:0,120,1800:. 0/1:25,25:50:99:.:.:617,0,544:. 0/1:30,19:49:99:.:.:475,0,759:. 0/0:48,0:48:99:.:.:0,114,1280:. 0/1:27,22:49:99:.:.:549,0,656:. 0/1:19,30:49:99:.:.:866,0,441:. 1/1:0,49:49:99:.:.:1602,147,0:. NW_016690355.1 928649 . G A 110949 . AC=189;AF=0.116;AN=1624;BaseQRankSum=0.959;DP=35728;ExcessHet=0.0000;FS=3.936;InbreedingCoeff=0.3081;MLEAC=197;MLEAF=0.121;MQ=60.00;MQRankSum=0.00;QD=15.73;ReadPosRankSum=0.00;SOR=1.629 GT:AD:DP:GQ:PGT:PID:PL:PS 0/1:28,22:50:99:.:.:480,0,628:. 1/1:0,50:50:99:.:.:1389,150,0:. 1/1:0,50:50:99:.:.:1436,150,0:. 1/1:1,48:49:99:.:.:1372,118,0:. 1/1:0,49:49:99:.:.:1432,147,0:. 1/1:0,49:49:99:.:.:1449,147,0:. 0/0:48,0:48:99:.:.:0,120,1800:. 1/1:0,47:47:99:.:.:1394,140,0:. 1/1:0,47:47:99:.:.:1369,141,0:. 1/1:0,50:50:99:.:.:1361,150,0:. 1/1:0,48:48:99:.:.:1352,143,0:. 1/1:0,49:49:99:.:.:1377,147,0:. 1/1:0,45:45:99:.:.:1265,135,0:. NW_016690355.1 1032004 . C T 106095 . AC=123;AF=0.076;AN=1610;BaseQRankSum=3.30;DP=34893;ExcessHet=0.0000;FS=2.182;InbreedingCoeff=0.4953;MLEAC=129;MLEAF=0.080;MQ=60.00;MQRankSum=0.00;QD=26.76;ReadPosRankSum=0.00;SOR=1.426 GT:AD:DP:GQ:PGT:PID:PL:PS 1|1:0,50:50:99:1|1:1032004_C_T:2233,151,0:1032004 1|1:0,48:48:99:1|1:1032004_C_T:2121,144,0:1032004 1|1:0,49:49:99:1|1:1032004_C_T:2188,147,0:1032004 0|1:28,21:49:99:0|1:1032004_C_T:789,0,1103:1032004 1|1:0,48:48:99:1|1:1032004_C_T:2146,144,0:1032004 0|1:23,25:48:99:0|1:1032004_C_T:971,0,891:1032004 1|1:0,47:47:99:1|1:1032004_C_T:2088,141,0:1032004 1|1:0,21:21:63:1|1:1032004_C_T:945,63,0:1032004 1|1:0,49:49:99:1|1:1032004_C_T:2170,147,0:1032004 1|1:0,48:48:99:1|1:1032004_C_T:2149,144,0:1032004 0|1:23,25:48:99:0|1:1032004_C_T:953,0,863:1032004 0|1:24,24:48:99:0|1:1032004_C_T:928,0,905:1032004 1|1:0,47:47:99:1|1:1032004_C_T:2089,141,0:1032004 NW_016690357.1 49199 . G A 9037.72 . AC=13;AF=7.985e-03;AN=1628;BaseQRankSum=6.15;DP=39295;ExcessHet=0.0000;FS=0.000;InbreedingCoeff=0.6707;MLEAC=13;MLEAF=7.985e-03;MQ=60.00;MQRankSum=0.00;QD=22.77;ReadPosRankSum=0.00;SOR=2.769 GT:AD:DP:GQ:PL 1/1:0,50:50:99:1581,150,0 0/1:24,26:50:99:652,0,515 1/1:0,49:49:99:1550,147,0 1/1:0,49:49:99:1413,147,0 0/0:49,0:49:99:0,120,1800 0/0:49,0:49:99:0,120,1800 0/0:49,0:49:99:0,120,1800 0/0:48,0:48:99:0,112,1233 0/0:50,0:50:99:0,120,1800 0/0:49,0:49:99:0,120,1800 0/0:49,0:49:99:0,120,1800 1/1:0,50:50:99:1524,150,0 1/1:0,50:50:99:1574,150,0 NW_016690357.1 261830 . C T 447870 . AC=714;AF=0.442;AN=1614;BaseQRankSum=5.65;DP=38182;ExcessHet=-0.0000;FS=2.570;InbreedingCoeff=0.3128;MLEAC=746;MLEAF=0.462;MQ=60.00;MQRankSum=0.00;QD=19.07;ReadPosRankSum=0.00;SOR=0.415 GT:AD:DP:GQ:PGT:PID:PL:PS 0/1:14,33:47:99:.:.:804,0,489:. 1/1:0,51:51:99:.:.:1455,153,0:. 1/1:0,50:50:99:.:.:1429,149,0:. 1/1:0,49:49:99:.:.:1491,147,0:. 1/1:0,46:46:99:.:.:1384,138,0:. 0/1:32,18:50:99:.:.:350,0,681:. 1/1:0,50:50:99:.:.:1380,150,0:. 0/1:27,22:49:99:.:.:475,0,565:. 1/1:0,50:50:99:.:.:1362,150,0:. 0/1:29,21:50:99:.:.:429,0,576:. 0/1:28,22:50:99:.:.:461,0,531:. 1/1:0,53:53:99:.:.:1523,158,0:. 1/1:0,49:49:99:.:.:1313,146,0:. NW_016690357.1 895109 . C T 76352.3 . AC=93;AF=0.057;AN=1628;BaseQRankSum=6.57;DP=38976;ExcessHet=0.0000;FS=0.000;InbreedingCoeff=0.3184;MLEAC=97;MLEAF=0.060;MQ=59.98;MQRankSum=0.00;QD=19.10;ReadPosRankSum=0.00;SOR=1.005 GT:AD:DP:GQ:PGT:PID:PL:PS 0/0:49,0:49:99:.:.:0,119,1329:. 0/0:47,0:47:99:.:.:0,120,1800:. 0/0:50,0:50:99:.:.:0,116,723:. 0|1:27,22:49:99:0|1:895107_G_A:843,0,835:895107 0/0:50,0:50:99:.:.:0,120,1800:. 0/0:50,0:50:99:.:.:0,120,1800:. 0/0:49,0:49:99:.:.:0,120,1800:. 1|1:0,49:49:99:1|1:895107_G_A:2205,147,0:895107 0/0:49,0:49:99:.:.:0,120,1353:. 0|1:35,13:50:99:0|1:895107_G_A:441,0,1431:895107 1|1:0,50:50:99:1|1:895107_G_A:2250,151,0:895107 1|1:0,48:48:99:1|1:895107_G_A:2160,144,0:895107 0/0:50,0:50:99:.:.:0,115,1344:. NW_016690357.1 1032748 . C T 1855.01 . AC=3;AF=1.880e-03;AN=1596;BaseQRankSum=6.08;DP=40135;ExcessHet=3.0185;FS=0.000;InbreedingCoeff=0.6046;MLEAC=3;MLEAF=1.880e-03;MQ=60.00;MQRankSum=0.00;QD=12.71;ReadPosRankSum=0.00;SOR=0.967 GT:AD:DP:GQ:PL 0/0:53,0:53:99:0,120,1800 0/0:50,0:50:99:0,120,1800 0/0:51,0:51:99:0,120,1800 0/0:50,0:50:99:0,120,1800 0/1:25,23:48:99:534,0,981 0/0:49,0:49:99:0,120,1800 0/0:49,0:49:99:0,120,1800 0/0:50,0:50:99:0,120,1800 0/1:19,30:49:99:738,0,378 0/0:53,0:53:99:0,120,1800 0/0:50,0:50:99:0,120,1800 0/1:20,29:49:99:655,0,365 0/0:49,0:49:99:0,120,1800 NW_016690357.1 1154566 . C T 2970.64 . AC=7;AF=4.294e-03;AN=1630;BaseQRankSum=6.64;DP=39369;ExcessHet=3.0665;FS=0.000;InbreedingCoeff=0.4955;MLEAC=7;MLEAF=4.294e-03;MQ=60.00;MQRankSum=0.00;QD=8.66;ReadPosRankSum=0.00;SOR=0.569 GT:AD:DP:GQ:PL 0/0:49,0:49:99:0,119,1070 0/0:50,0:50:99:0,120,1800 0/0:48,0:48:99:0,119,1062 0/1:30,17:47:99:292,0,159 0/0:49,0:49:99:0,119,1328 0/0:49,0:49:99:0,120,1800 0/1:32,18:50:99:346,0,169 0/0:48,0:48:99:0,120,1800 0/0:50,0:50:99:0,120,1800 0/1:23,26:49:95:558,0,95 0/1:25,25:50:99:530,0,99 0/0:50,0:50:99:0,120,1800 0/0:49,0:49:99:0,120,1321 NW_016690358.1 1595631 . T C 66334.7 . AC=162;AF=0.099;AN=1636;BaseQRankSum=-6.265e+00;DP=38689;ExcessHet=0.0627;FS=0.000;InbreedingCoeff=0.1404;MLEAC=168;MLEAF=0.103;MQ=60.00;MQRankSum=0.00;QD=9.28;ReadPosRankSum=0.00;SOR=0.682 GT:AD:DP:GQ:PL 0/1:26,23:49:99:363,0,556 0/1:25,25:50:99:125,0,530 0/0:49,0:49:99:0,120,1800 1/1:0,50:50:99:533,129,0 0/0:50,0:50:0:0,0,28 0/0:48,0:48:99:0,120,1800 0/0:49,0:49:99:0,120,1300 0/0:50,0:50:99:0,120,1800 0/0:48,0:48:99:0,120,1800 0/1:23,26:49:99:444,0,865 0/0:46,0:46:99:0,112,1307 0/0:49,0:49:99:0,118,1445 0/0:47,0:47:99:0,120,1800 NW_016690359.1 1360946 . T G 18420.1 . AC=116;AF=0.071;AN=1638;BaseQRankSum=-6.145e+00;DP=39027;ExcessHet=0.0000;FS=0.000;InbreedingCoeff=0.2789;MLEAC=119;MLEAF=0.073;MQ=59.99;MQRankSum=0.00;QD=3.88;ReadPosRankSum=0.00;SOR=1.368 GT:AD:DP:GQ:PGT:PID:PL:PS 1/1:2,46:48:59:.:.:373,59,0:. 0/1:20,25:45:99:.:.:114,0,776:. 0/1:18,32:50:99:.:.:170,0,409:. 0/1:20,29:49:99:.:.:142,0,766:. 1/1:0,49:49:99:.:.:466,125,0:. 0/1:24,23:47:88:.:.:88,0,949:. 0/0:51,0:51:99:.:.:0,120,1800:. 1/1:0,50:50:99:.:.:476,127,0:. 0/0:50,0:50:99:.:.:0,119,1490:. 0/1:19,33:52:99:.:.:173,0,714:. 1/1:0,49:49:99:.:.:466,125,0:. 1/1:0,50:50:99:.:.:476,127,0:. 1/1:0,45:45:99:.:.:428,115,0:. NW_016690359.1 1621954 . G A 116424 . AC=156;AF=0.106;AN=1478;BaseQRankSum=6.23;DP=32481;ExcessHet=-0.0000;FS=0.000;InbreedingCoeff=0.4908;MLEAC=186;MLEAF=0.126;MQ=60.00;MQRankSum=0.00;QD=21.64;ReadPosRankSum=0.00;SOR=1.530 GT:AD:DP:GQ:PGT:PID:PL:PS 0/1:21,33:54:99:.:.:846,0,783:. 0/0:50,0:50:99:.:.:0,99,1305:. 0/0:50,0:50:99:.:.:0,111,1272:. 0/1:22,28:50:99:.:.:711,0,461:. 0/0:51,0:51:99:.:.:0,120,1800:. 0/0:50,0:50:99:.:.:0,120,1800:. 0/0:51,0:51:99:.:.:0,120,1800:. 0/0:49,0:49:99:.:.:0,118,1535:. 1/1:0,51:51:99:.:.:1516,153,0:. 0/0:50,0:50:99:.:.:0,119,1495:. 0/0:49,0:49:99:.:.:0,118,1462:. 0/0:49,0:49:99:.:.:0,120,1273:. 0/0:52,0:52:99:.:.:0,120,1800:. NW_016690361.1 496352 . A G 12347.4 . AC=20;AF=0.012;AN=1626;BaseQRankSum=-6.575e+00;DP=40342;ExcessHet=0.0000;FS=0.000;InbreedingCoeff=0.6081;MLEAC=21;MLEAF=0.013;MQ=60.00;MQRankSum=0.00;QD=16.57;ReadPosRankSum=0.00;SOR=1.925 GT:AD:DP:GQ:PGT:PID:PL:PS 1|1:0,52:52:99:1|1:496348_C_A:2034,157,0:496348 0/0:49,0:49:99:.:.:0,120,1800:. 0/0:48,0:48:99:.:.:0,100,1257:. 0/0:50,0:50:99:.:.:0,105,1252:. 0/0:49,0:49:99:.:.:0,120,1800:. 0/0:48,0:48:99:.:.:0,116,1627:. 0/0:49,0:49:99:.:.:0,118,1321:. 0/0:48,0:48:99:.:.:0,120,1800:. 0/0:44,0:44:99:.:.:0,120,1800:. 0/0:49,0:49:99:.:.:0,118,1248:. 0/0:49,0:49:99:.:.:0,107,1513:. 0/0:53,0:53:99:.:.:0,120,1800:. 0/1:21,25:46:99:.:.:111,0,493:. NW_016690361.1 678068 . G A 106050 . AC=160;AF=0.098;AN=1626;BaseQRankSum=5.47;DP=39187;ExcessHet=0.0002;FS=0.000;InbreedingCoeff=0.2133;MLEAC=165;MLEAF=0.101;MQ=59.99;MQRankSum=0.00;QD=15.45;ReadPosRankSum=0.00;SOR=0.774 GT:AD:DP:GQ:PGT:PID:PL:PS 0/0:49,0:49:99:.:.:0,120,1800:. 1/1:0,48:48:99:.:.:1557,144,0:. 1/1:1,48:49:99:.:.:1490,119,0:. 0/1:18,30:48:99:.:.:797,0,371:. 0/0:50,0:50:99:.:.:0,120,1800:. 1/1:0,48:48:99:.:.:1558,144,0:. 0/1:29,19:48:99:.:.:421,0,657:. 1/1:0,49:49:99:.:.:1535,147,0:. 0/0:49,0:49:99:.:.:0,115,1362:. 1/1:0,48:48:99:.:.:1491,144,0:. 0/1:27,23:50:99:.:.:547,0,605:. 0/0:50,0:50:99:.:.:0,107,1310:. 0/0:47,0:47:99:.:.:0,114,1167:. NW_016690361.1 1569529 . T C 60767.7 . AC=125;AF=0.078;AN=1612;BaseQRankSum=-6.697e+00;DP=38170;ExcessHet=0.0000;FS=0.000;InbreedingCoeff=0.3359;MLEAC=130;MLEAF=0.081;MQ=60.00;MQRankSum=0.00;QD=12.13;ReadPosRankSum=0.00;SOR=0.550 GT:AD:DP:GQ:PGT:PID:PL:PS 0/1:31,18:49:99:.:.:279,0,743:. 0/0:48,0:48:99:.:.:0,114,1292:. 0/0:49,0:49:99:.:.:0,115,1471:. 0/0:50,0:50:99:.:.:0,120,1800:. 0/0:49,0:49:99:.:.:0,120,1800:. 0/0:50,0:50:99:.:.:0,120,1800:. 0/0:49,0:49:99:.:.:0,120,1800:. 0/0:46,0:46:99:.:.:0,119,1318:. 0/1:24,23:47:99:.:.:114,0,531:. 0/1:30,19:49:55:.:.:55,0,661:. 0/0:49,0:49:99:.:.:0,120,1800:. 0/0:50,0:50:99:.:.:0,102,1331:. 0/1:29,21:50:59:.:.:59,0,635:. NW_016690362.1 754954 . G T 3076.4 . AC=4;AF=2.463e-03;AN=1624;BaseQRankSum=5.80;DP=36768;ExcessHet=3.0264;FS=0.000;InbreedingCoeff=0.5659;MLEAC=4;MLEAF=2.463e-03;MQ=60.00;MQRankSum=0.00;QD=15.31;ReadPosRankSum=0.579;SOR=1.074 GT:AD:DP:GQ:PL 0/0:49,0:49:99:0,120,1800 0/1:28,21:49:99:511,0,701 0/1:24,27:51:99:725,0,579 0/0:49,0:49:99:0,120,1800 0/0:51,0:51:99:0,120,1800 0/0:49,0:49:99:0,120,1800 0/0:47,0:47:99:0,120,1800 0/0:48,0:48:99:0,117,1219 0/0:47,0:47:99:0,107,1360 0/0:48,0:48:99:0,120,1800 0/0:46,0:46:99:0,109,1573 0/1:11,39:50:99:1113,0,154 0/0:50,0:50:99:0,120,1800 NW_016690362.1 1620306 . A G 1401.78 . AC=3;AF=1.856e-03;AN=1616;BaseQRankSum=-4.861e+00;DP=37532;ExcessHet=0.0040;FS=0.000;InbreedingCoeff=0.6181;MLEAC=3;MLEAF=1.856e-03;MQ=60.00;MQRankSum=0.00;QD=14.76;ReadPosRankSum=0.00;SOR=1.634 GT:AD:DP:GQ:PL 0/0:47,0:47:99:0,102,1299 0/0:50,0:50:99:0,120,1800 0/0:46,0:46:99:0,120,1800 0/0:46,0:46:99:0,120,1800 0/0:46,0:46:99:0,119,1254 0/0:47,0:47:99:0,99,1142 0/0:48,0:48:99:0,117,1327 0/0:46,0:46:99:0,111,1173 0/0:47,0:47:99:0,120,1800 0/1:31,19:50:99:332,0,713 0/0:47,0:47:99:0,116,1260 1/1:0,45:45:99:1148,134,0 0/0:48,0:48:99:0,111,1463 NW_016690362.1 1927925 . C T 6935.5 . AC=14;AF=8.589e-03;AN=1630;BaseQRankSum=6.57;DP=39199;ExcessHet=0.0024;FS=0.000;InbreedingCoeff=0.5107;MLEAC=15;MLEAF=9.202e-03;MQ=60.00;MQRankSum=0.00;QD=11.60;ReadPosRankSum=0.00;SOR=0.963 GT:AD:DP:GQ:PL 0/0:50,0:50:99:0,120,1800 0/0:51,0:51:99:0,120,1800 0/0:48,0:48:99:0,119,1182 0/1:28,22:50:99:450,0,169 0/0:48,0:48:99:0,120,1800 0/0:48,0:48:99:0,120,1800 0/0:50,0:50:99:0,118,1304 0/0:49,0:49:99:0,120,1800 0/0:49,0:49:99:0,120,1800 1/1:0,48:48:99:1277,143,0 0/1:23,26:49:83:515,0,83 0/1:25,24:49:99:501,0,115 0/0:50,0:50:99:0,120,1800 NW_016690363.1 11996 . G A 28625.1 . AC=40;AF=0.025;AN=1616;BaseQRankSum=6.39;DP=40398;ExcessHet=0.0000;FS=13.275;InbreedingCoeff=0.5135;MLEAC=42;MLEAF=0.026;MQ=60.00;MQRankSum=0.00;QD=18.66;ReadPosRankSum=0.00;SOR=0.010 GT:AD:DP:GQ:PGT:PID:PL:PS 0/0:50,0:50:99:.:.:0,120,1800:. 0/0:46,0:46:99:.:.:0,120,1800:. 0/0:50,0:50:99:.:.:0,120,1800:. 0/1:27,23:50:99:.:.:557,0,596:. 0/0:50,0:50:99:.:.:0,120,1800:. 0/0:49,0:49:99:.:.:0,120,1800:. 1/1:0,50:50:99:.:.:1482,150,0:. 0/0:50,0:50:99:.:.:0,120,1800:. 1/1:0,50:50:99:.:.:1486,150,0:. 0/1:24,26:50:99:.:.:648,0,540:. 0/1:23,26:49:99:.:.:650,0,507:. 0/1:22,25:47:99:.:.:593,0,452:. 1/1:0,49:49:99:.:.:1453,147,0:. NW_016690363.1 440661 . G T 2055.04 . AC=3;AF=1.870e-03;AN=1604;BaseQRankSum=5.32;DP=38139;ExcessHet=3.0184;FS=0.000;InbreedingCoeff=0.5626;MLEAC=3;MLEAF=1.870e-03;MQ=60.00;MQRankSum=0.00;QD=14.27;ReadPosRankSum=0.00;SOR=0.904 GT:AD:DP:GQ:PL 0/0:49,0:49:99:0,120,1800 0/0:49,0:49:99:0,120,1800 0/0:49,0:49:99:0,120,1800 0/0:50,0:50:99:0,120,1800 0/0:49,0:49:99:0,120,1196 0/0:50,0:50:99:0,120,1800 0/0:48,0:48:99:0,120,1800 0/1:20,28:48:99:735,0,446 0/0:49,0:49:99:0,120,1800 0/0:49,0:49:99:0,120,1800 0/1:20,27:47:99:757,0,490 0/1:25,24:49:99:635,0,572 0/0:48,0:48:99:0,120,1800 NW_016690364.1 282187 . G A 7064.64 . AC=13;AF=8.105e-03;AN=1604;BaseQRankSum=6.66;DP=39036;ExcessHet=0.1070;FS=0.000;InbreedingCoeff=0.5110;MLEAC=14;MLEAF=8.728e-03;MQ=60.00;MQRankSum=0.00;QD=11.04;ReadPosRankSum=0.00;SOR=0.592 GT:AD:DP:GQ:PL 0/1:22,28:50:99:675,0,437 0/0:49,0:49:99:0,118,1699 0/1:22,24:46:99:552,0,448 0/1:68,28:96:99:462,0,1635 0/1:32,24:56:99:522,0,651 0/0:77,0:77:99:0,120,1800 0/1:25,25:50:99:545,0,499 0/1:26,23:49:99:535,0,544 0/0:50,0:50:99:0,120,1800 0/1:27,23:50:99:507,0,540 0/0:50,0:50:99:0,120,1800 0/0:49,0:49:99:0,120,1800 0/0:50,0:50:99:0,120,1800 NW_016690364.1 678291 . T G 42676.3 . AC=63;AF=0.039;AN=1630;BaseQRankSum=-6.448e+00;DP=39210;ExcessHet=0.0129;FS=2.158;InbreedingCoeff=0.2675;MLEAC=65;MLEAF=0.040;MQ=60.00;MQRankSum=0.00;QD=14.83;ReadPosRankSum=0.00;SOR=1.183 GT:AD:DP:GQ:PGT:PID:PL:PS 0/0:49,0:49:99:.:.:0,120,1800:. 0/0:49,0:49:99:.:.:0,120,1362:. 0/0:51,0:51:99:.:.:0,120,1800:. 0/0:49,0:49:99:.:.:0,120,1267:. 0|1:24,25:49:99:0|1:678291_T_G:743,0,920:678291 0/0:48,0:48:99:.:.:0,109,1231:. 0|1:25,26:51:99:0|1:678291_T_G:747,0,972:678291 0|1:25,24:49:99:0|1:678291_T_G:723,0,978:678291 0/1:23,27:50:99:.:.:119,0,610:. 1|1:1,49:50:99:1|1:678291_T_G:1726,105,0:678291 0|1:22,26:48:99:0|1:678291_T_G:799,0,846:678291 0/0:49,0:49:99:.:.:0,120,1800:. 0/0:50,0:50:99:.:.:0,120,1800:. NW_016690364.1 1699492 . G A 51011.8 . 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AC=82;AF=0.050;AN=1632;BaseQRankSum=-9.210e-01;DP=41721;ExcessHet=0.0000;FS=7.630;InbreedingCoeff=0.3246;MLEAC=85;MLEAF=0.052;MQ=60.00;MQRankSum=0.00;QD=15.36;ReadPosRankSum=0.00;SOR=2.148 GT:AD:DP:GQ:PL 0/1:31,26:57:99:604,0,755 0/0:52,0:52:99:0,120,1800 0/0:51,0:51:99:0,120,1800 1/1:0,51:51:99:1491,153,0 0/0:49,0:49:99:0,120,1800 1/1:0,51:51:99:1488,153,0 1/1:0,52:52:99:1421,156,0 0/1:23,28:51:99:606,0,883 0/0:52,0:52:99:0,120,1800 0/0:53,0:53:99:0,120,1800 0/0:51,0:51:99:0,120,1800 0/0:50,0:50:99:0,120,1800 0/0:51,0:51:99:0,120,1800 NW_016690365.1 95320 . C T 51195.8 . AC=74;AF=0.046;AN=1616;BaseQRankSum=6.18;DP=38678;ExcessHet=-0.0000;FS=0.000;InbreedingCoeff=0.6438;MLEAC=78;MLEAF=0.048;MQ=60.00;MQRankSum=0.00;QD=22.26;ReadPosRankSum=0.00;SOR=2.296 GT:AD:DP:GQ:PL 0/0:53,0:53:99:0,120,1800 1/1:0,49:49:99:1547,147,0 0/1:27,25:52:99:625,0,614 1/1:0,49:49:99:1503,147,0 0/1:33,16:49:99:304,0,744 1/1:0,48:48:99:1492,144,0 1/1:0,50:50:99:1513,150,0 1/1:0,51:51:99:1534,153,0 0/0:53,0:53:99:0,120,1800 1/1:1,53:54:99:1540,152,0 1/1:0,52:52:99:1589,156,0 0/0:49,0:49:99:0,120,1800 0/0:50,0:50:99:0,120,1800 NW_016690365.1 1065246 . A G 30468.8 . AC=28;AF=0.017;AN=1616;BaseQRankSum=-5.506e+00;DP=39167;ExcessHet=-0.0000;FS=0.000;InbreedingCoeff=0.7390;MLEAC=29;MLEAF=0.018;MQ=60.00;MQRankSum=0.00;QD=34.39;ReadPosRankSum=-9.900e-02;SOR=5.144 GT:AD:DP:GQ:PGT:PID:PL:PS 1|1:0,49:49:99:1|1:1065246_A_G:2205,147,0:1065246 1|1:0,50:50:99:1|1:1065246_A_G:2217,150,0:1065246 1|1:0,50:50:99:1|1:1065246_A_G:2240,151,0:1065246 0/1:28,23:51:99:.:.:497,0,764:. 0/0:51,0:51:99:.:.:0,120,1800:. 0/0:48,0:48:99:.:.:0,120,1800:. 0/0:50,0:50:99:.:.:0,120,1800:. 1|1:0,50:50:99:1|1:1065246_A_G:2221,151,0:1065246 1|1:1,52:53:99:1|1:1065246_A_G:2295,115,0:1065246 1|1:0,52:52:99:1|1:1065246_A_G:2335,157,0:1065246 1|1:0,52:52:99:1|1:1065246_A_G:2336,157,0:1065246 1|1:0,55:55:99:1|1:1065246_A_G:2449,166,0:1065246 1|1:0,51:51:99:1|1:1065246_A_G:2285,154,0:1065246 NW_016690366.1 8637 . A C 35245.1 . AC=65;AF=0.040;AN=1620;BaseQRankSum=-6.771e+00;DP=41235;ExcessHet=0.0000;FS=0.000;InbreedingCoeff=0.4103;MLEAC=68;MLEAF=0.042;MQ=60.00;MQRankSum=0.00;QD=13.53;ReadPosRankSum=0.00;SOR=1.275 GT:AD:DP:GQ:PGT:PID:PL:PS 1/1:0,48:48:99:.:.:1283,144,0:. 0/1:23,26:49:99:.:.:496,0,888:. 1/1:1,47:48:99:.:.:1131,114,0:. 1/1:1,48:49:99:.:.:1140,117,0:. 1/1:0,21:21:63:.:.:498,63,0:. 1/1:0,46:46:99:.:.:1134,138,0:. 0/1:28,22:50:99:.:.:394,0,656:. 1/1:0,49:49:99:.:.:1261,147,0:. 0/0:50,0:50:99:.:.:0,120,1800:. 0/1:24,25:49:99:.:.:471,0,933:. 0/1:23,28:51:99:.:.:539,0,882:. 1/1:0,50:50:99:.:.:1285,150,0:. 1/1:0,48:48:99:.:.:1232,144,0:. NW_016690366.1 1802908 . G A 7538.24 . AC=13;AF=8.025e-03;AN=1620;BaseQRankSum=6.39;DP=38356;ExcessHet=0.1059;FS=0.000;InbreedingCoeff=0.5022;MLEAC=14;MLEAF=8.642e-03;MQ=60.00;MQRankSum=0.00;QD=13.32;ReadPosRankSum=0.00;SOR=0.686 GT:AD:DP:GQ:PGT:PID:PL:PS 0/0:45,0:45:99:.:.:0,120,1800:. 0/0:45,0:45:99:.:.:0,117,1156:. 0/0:46,0:46:99:.:.:0,120,1800:. 0/1:28,20:48:99:.:.:472,0,135:. 0/0:43,0:43:99:.:.:0,104,1136:. 0/1:26,21:47:99:.:.:504,0,118:. 0/1:19,30:49:42:.:.:715,0,42:. 0/0:44,0:44:99:.:.:0,120,1800:. 0/0:47,0:47:99:.:.:0,109,1320:. 0/0:48,0:48:99:.:.:0,112,1298:. 0/0:43,0:43:99:.:.:0,111,1233:. 0/0:46,0:46:99:.:.:0,120,1800:. 0/0:45,0:45:99:.:.:0,120,1800:. NW_016690369.1 945945 . C T 26582.5 . AC=37;AF=0.023;AN=1626;BaseQRankSum=6.59;DP=38522;ExcessHet=-0.0000;FS=0.000;InbreedingCoeff=0.7837;MLEAC=38;MLEAF=0.023;MQ=60.00;MQRankSum=0.00;QD=27.46;ReadPosRankSum=0.00;SOR=4.854 GT:AD:DP:GQ:PL 1/1:1,45:46:99:1393,110,0 1/1:0,49:49:99:1500,147,0 1/1:0,48:48:99:1513,144,0 1/1:0,48:48:99:1452,144,0 1/1:0,48:48:99:1472,144,0 1/1:0,49:49:99:1501,147,0 1/1:0,49:49:99:1504,147,0 0/1:23,25:48:99:648,0,515 0/1:25,22:47:99:573,0,583 0/1:29,19:48:99:440,0,684 1/1:0,46:46:99:1413,138,0 1/1:0,49:49:99:1580,147,0 1/1:0,50:50:99:1529,150,0 NW_016690447.1 240402 . A T 115502 . AC=130;AF=0.080;AN=1616;BaseQRankSum=-6.500e+00;DP=38780;ExcessHet=0.0000;FS=3.724;InbreedingCoeff=0.3796;MLEAC=136;MLEAF=0.084;MQ=60.00;MQRankSum=0.00;QD=22.59;ReadPosRankSum=0.00;SOR=1.397 GT:AD:DP:GQ:PGT:PID:PL:PS 1|1:0,50:50:99:1|1:240400_G_T:2243,151,0:240400 0/0:48,0:48:99:.:.:0,120,1800:. 0/0:48,0:48:99:.:.:0,120,1800:. 0/0:49,0:49:99:.:.:0,119,1353:. 0/0:48,0:48:99:.:.:0,116,1422:. 0|1:27,23:50:99:0|1:240400_G_T:492,0,681:240400 0|1:24,25:49:99:0|1:240400_G_T:544,0,565:240400 0/0:48,0:48:99:.:.:0,110,1180:. 0/0:48,0:48:99:.:.:0,120,1800:. 0|1:24,25:49:99:0|1:240400_G_T:572,0,615:240400 0/0:49,0:49:99:.:.:0,120,1800:. 0/0:47,0:47:99:.:.:0,120,1800:. 0/0:48,0:48:99:.:.:0,120,1800:. NW_016690371.1 599626 . A G 1.03368e+06 . AC=1398;AF=0.862;AN=1622;BaseQRankSum=-5.095e+00;DP=41052;ExcessHet=0.0030;FS=0.000;InbreedingCoeff=0.1609;MLEAC=1453;MLEAF=0.896;MQ=59.99;MQRankSum=0.00;QD=26.13;ReadPosRankSum=0.00;SOR=0.532 GT:AD:DP:GQ:PGT:PID:PL:PS 0/0:49,0:49:99:.:.:0,103,1195:. 0/1:23,23:46:99:.:.:487,0,544:. 1/1:0,53:53:99:.:.:1483,158,0:. 0/0:48,0:48:99:.:.:0,106,746:. 1/1:0,52:52:99:.:.:1479,156,0:. 0/1:22,28:50:99:.:.:597,0,517:. 0/1:29,22:51:99:.:.:435,0,679:. 0/0:49,0:49:99:.:.:0,120,1800:. 0/0:50,0:50:99:.:.:0,120,1800:. 0/1:22,28:51:99:.:.:596,0,450:. 0/0:48,0:48:99:.:.:0,103,1276:. 0/0:48,0:48:99:.:.:0,120,1800:. 0/0:52,0:52:99:.:.:0,120,1800:. NW_016690371.1 1071444 . T A 3538.78 . AC=6;AF=3.788e-03;AN=1584;BaseQRankSum=6.18;DP=36931;ExcessHet=3.0516;FS=0.000;InbreedingCoeff=0.5462;MLEAC=6;MLEAF=3.788e-03;MQ=60.00;MQRankSum=0.00;QD=12.16;ReadPosRankSum=0.00;SOR=0.816 GT:AD:DP:GQ:PL 0/0:49,0:49:99:0,107,1223 0/0:47,0:47:99:0,118,1341 0/0:48,0:48:99:0,115,1285 0/1:25,25:50:99:594,0,526 0/0:48,0:48:99:0,119,1374 0/1:21,27:48:99:682,0,396 0/1:25,25:50:99:567,0,515 0/1:26,21:47:99:478,0,552 0/0:49,0:49:99:0,118,1317 0/0:46,0:46:99:0,115,1200 0/1:19,29:48:99:713,0,360 0/0:48,0:48:99:0,115,1293 0/0:49,0:49:99:0,120,1800 NW_016690371.1 1479474 . G C 611223 . 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AC=12;AF=7.371e-03;AN=1628;BaseQRankSum=6.05;DP=39054;ExcessHet=0.0000;FS=0.000;InbreedingCoeff=0.5783;MLEAC=12;MLEAF=7.371e-03;MQ=60.00;MQRankSum=0.00;QD=18.61;ReadPosRankSum=0.00;SOR=1.683 GT:AD:DP:GQ:PGT:PID:PL:PS 0/1:24,25:49:99:.:.:594,0,541:. 0/1:26,22:48:99:.:.:527,0,599:. 0/1:19,28:47:99:.:.:717,0,437:. 0|1:25,22:47:99:0|1:1654362_G_A:849,0,815:1654362 0/0:49,0:49:99:.:.:0,120,1800:. 0/1:19,26:45:99:.:.:689,0,449:. 0/0:49,0:49:99:.:.:0,120,1800:. 0/0:48,0:48:99:.:.:0,120,1800:. 0/0:49,0:49:99:.:.:0,120,1800:. 1/1:0,48:48:99:.:.:1426,144,0:. 0/0:50,0:50:99:.:.:0,120,1800:. 0/0:49,0:49:99:.:.:0,120,1800:. 0/0:47,0:47:99:.:.:0,112,1093:. NW_016690372.1 151690 . T C 340622 . 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AC=4;AF=2.460e-03;AN=1626;BaseQRankSum=6.57;DP=38071;ExcessHet=0.0080;FS=0.000;InbreedingCoeff=0.5891;MLEAC=4;MLEAF=2.460e-03;MQ=60.00;MQRankSum=0.00;QD=18.10;ReadPosRankSum=0.457;SOR=1.895 GT:AD:DP:GQ:PL 0/0:48,0:48:99:0,112,1410 0/0:48,0:48:99:0,120,1800 0/0:48,0:48:99:0,120,1800 0/0:48,0:48:99:0,120,1800 0/1:20,30:50:99:740,0,297 0/1:24,24:48:99:584,0,426 0/0:47,0:47:99:0,120,1800 0/0:46,0:46:99:0,118,1380 0/0:50,0:50:99:0,118,1535 0/0:50,0:50:99:0,120,1800 0/0:48,0:48:99:0,115,1275 1/1:0,52:52:99:1489,155,0 0/0:49,0:49:99:0,112,1245 NW_016690374.1 1476364 . C T 6218.38 . AC=13;AF=7.966e-03;AN=1632;BaseQRankSum=6.35;DP=39061;ExcessHet=0.0018;FS=2.543;InbreedingCoeff=0.4177;MLEAC=14;MLEAF=8.578e-03;MQ=60.00;MQRankSum=0.00;QD=10.78;ReadPosRankSum=0.00;SOR=0.457 GT:AD:DP:GQ:PGT:PID:PL:PS 0/0:48,0:48:99:.:.:0,118,1282:. 0/0:49,0:49:99:.:.:0,115,1247:. 0/0:50,0:50:99:.:.:0,108,1263:. 0/0:50,0:50:0:.:.:0,0,816:. 0/0:50,0:50:99:.:.:0,111,1403:. 0/1:28,22:50:99:.:.:482,0,622:. 1/1:0,37:37:99:.:.:1092,111,0:. 0/0:48,0:48:99:.:.:0,118,1437:. 0/0:49,0:49:99:.:.:0,120,1800:. 0/0:49,0:49:99:.:.:0,120,1800:. 0/0:49,0:49:99:.:.:0,119,1508:. 0/0:50,0:50:99:.:.:0,120,1800:. 0/0:49,0:49:99:.:.:0,116,1543:. NW_016690375.1 330807 . A G 158995 . 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AC=147;AF=0.091;AN=1620;BaseQRankSum=6.42;DP=38628;ExcessHet=0.0000;FS=0.000;InbreedingCoeff=0.3942;MLEAC=151;MLEAF=0.093;MQ=59.99;MQRankSum=0.00;QD=15.21;ReadPosRankSum=0.00;SOR=0.432 GT:AD:DP:GQ:PGT:PID:PL:PS 0/1:19,23:42:99:.:.:533,0,324:. 1/1:0,48:48:99:.:.:1354,144,0:. 0/0:51,0:51:99:.:.:0,103,1281:. 0/1:25,26:51:99:.:.:544,0,403:. 0/1:28,22:50:99:.:.:461,0,514:. 1/1:0,50:50:99:.:.:1384,150,0:. 0/0:50,0:50:99:.:.:0,120,1800:. 0/1:33,16:49:99:.:.:320,0,689:. 1/1:0,48:48:99:.:.:1393,144,0:. 1/1:0,50:51:99:.:.:1489,150,0:. 0/0:54,0:54:99:.:.:0,120,1800:. 0|1:23,28:51:99:0|1:532987_C_T:1098,0,881:532987 0/0:51,0:51:99:.:.:0,113,1316:. NW_016690375.1 1605746 . T C 1622.89 . AC=3;AF=1.861e-03;AN=1612;BaseQRankSum=-5.844e+00;DP=39029;ExcessHet=3.0184;FS=0.000;InbreedingCoeff=0.5596;MLEAC=3;MLEAF=1.861e-03;MQ=60.00;MQRankSum=0.00;QD=11.12;ReadPosRankSum=0.00;SOR=0.666 GT:AD:DP:GQ:PL 0/0:50,0:50:99:0,120,1800 0/0:48,0:48:99:0,120,1800 0/0:50,0:50:99:0,120,1800 0/0:49,0:49:99:0,120,1800 0/0:49,0:49:99:0,120,1800 0/0:48,0:48:99:0,120,1800 0/0:50,0:50:99:0,120,1800 0/1:19,31:50:99:760,0,470 0/0:51,0:51:99:0,120,1800 0/0:48,0:48:99:0,120,1800 0/1:18,30:48:99:754,0,423 0/1:37,11:48:99:181,0,1061 0/0:49,0:49:99:0,120,1800 NW_016690376.1 430697 . G A 9237.19 . 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AC=26;AF=0.018;AN=1480;BaseQRankSum=-4.999e+00;DP=33130;ExcessHet=0.0000;FS=4.333;InbreedingCoeff=0.5281;MLEAC=31;MLEAF=0.021;MQ=60.00;MQRankSum=0.00;QD=14.88;ReadPosRankSum=-8.759e+00;SOR=4.990 GT:AD:DP:GQ:PL 0/1:48,51:99:99:1029,0,1035 0/1:26,23:49:99:536,0,568 0/0:49,0:49:99:0,120,1800 0/1:46,52:98:99:1073,0,983 0/1:49,49:98:99:1004,0,1017 0/0:47,0:47:99:0,120,1800 1/1:0,50:50:99:1240,150,0 0/0:49,0:49:99:0,118,1079 0/0:49,0:49:99:0,120,1273 0/0:48,0:48:99:0,112,1082 0/0:49,0:49:99:0,120,1800 0/0:49,0:49:99:0,120,1800 0/0:48,0:48:99:0,120,1800 NW_016690376.1 1294775 . C T 804851 . AC=1090;AF=0.678;AN=1608;BaseQRankSum=6.11;DP=39693;ExcessHet=0.0126;FS=0.000;InbreedingCoeff=0.1144;MLEAC=1141;MLEAF=0.710;MQ=60.00;MQRankSum=0.00;QD=23.15;ReadPosRankSum=0.00;SOR=0.676 GT:AD:DP:GQ:PGT:PID:PL:PS 1/1:0,49:49:99:.:.:1339,147,0:. 1/1:0,46:46:99:.:.:1258,138,0:. 1/1:0,50:50:99:.:.:1368,150,0:. 0/1:18,31:49:99:.:.:744,0,317:. 0/1:25,24:49:99:.:.:542,0,498:. 1/1:0,50:50:99:.:.:1325,150,0:. 1/1:0,47:47:99:.:.:1303,141,0:. 1/1:0,49:49:99:.:.:1341,147,0:. 0/0:48,0:48:99:.:.:0,102,1202:. 0/1:23,27:50:99:.:.:579,0,427:. 1/1:0,49:49:99:.:.:1284,147,0:. 1/1:0,51:51:99:.:.:1463,153,0:. 0/1:24,25:49:99:.:.:546,0,455:. NW_016690376.1 1445100 . T C 198349 . AC=309;AF=0.190;AN=1626;BaseQRankSum=-6.437e+00;DP=38959;ExcessHet=0.0000;FS=0.000;InbreedingCoeff=0.1888;MLEAC=320;MLEAF=0.197;MQ=60.00;MQRankSum=0.00;QD=15.79;ReadPosRankSum=0.00;SOR=1.256 GT:AD:DP:GQ:PGT:PID:PL:PS 1|1:0,46:46:99:1|1:1445100_T_C:1698,138,0:1445100 0|1:15,36:51:99:0|1:1445100_T_C:1149,0,500:1445100 0/1:21,25:46:99:.:.:111,0,507:. 0|1:25,20:45:99:0|1:1445100_T_C:606,0,958:1445100 0/0:48,0:48:99:.:.:0,113,1290:. 0/1:30,20:50:49:.:.:49,0,719:. 0/1:24,27:51:99:.:.:116,0,518:. 0/0:49,0:49:99:.:.:0,120,1800:. 0/0:46,0:46:99:.:.:0,120,1800:. 0/0:47,0:47:99:.:.:0,120,1800:. 0/1:22,25:47:99:.:.:109,0,456:. 0/1:21,28:49:99:.:.:132,0,435:. 0/0:50,0:50:99:.:.:0,120,1800:. NW_016690379.1 166596 . C T 1328.47 . AC=3;AF=1.843e-03;AN=1628;BaseQRankSum=6.25;DP=37805;ExcessHet=3.0183;FS=0.000;InbreedingCoeff=0.5850;MLEAC=3;MLEAF=1.843e-03;MQ=60.00;MQRankSum=0.00;QD=9.99;ReadPosRankSum=0.00;SOR=0.650 GT:AD:DP:GQ:PL 0/0:47,0:47:99:0,120,1362 0/0:49,0:49:99:0,120,1800 0/0:47,0:47:99:0,113,1355 0/0:48,0:48:99:0,117,1217 0/1:24,21:45:99:469,0,434 0/1:24,22:46:99:425,0,115 0/0:47,0:47:99:0,120,1800 0/0:44,0:44:99:0,104,1094 0/0:48,0:48:99:0,113,1247 0/0:46,0:46:99:0,120,1800 0/0:48,0:48:99:0,104,1211 0/1:20,22:42:99:507,0,345 0/0:48,0:48:99:0,120,1800 NW_016690380.1 875718 . C T 2826.94 . 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AC=13;AF=8.025e-03;AN=1620;BaseQRankSum=6.39;DP=38378;ExcessHet=0.0000;FS=0.000;InbreedingCoeff=0.6859;MLEAC=14;MLEAF=8.642e-03;MQ=60.00;MQRankSum=0.00;QD=28.33;ReadPosRankSum=0.00;SOR=5.771 GT:AD:DP:GQ:PGT:PID:PL:PS 0/0:50,0:50:99:.:.:0,120,1800:. 0/0:49,0:49:99:.:.:0,120,1800:. 0/0:48,0:48:99:.:.:0,120,1800:. 0/0:48,0:48:99:.:.:0,120,1420:. 0/0:48,0:48:99:.:.:0,120,1800:. 0/0:48,0:48:99:.:.:0,120,1800:. 0/0:49,0:49:99:.:.:0,120,1800:. 1|1:0,48:48:99:1|1:1188058_T_C:2160,144,0:1188058 1|1:0,48:48:99:1|1:1188058_T_C:2153,144,0:1188058 1|1:0,50:50:99:1|1:1188058_T_C:2250,151,0:1188058 1|1:0,49:49:99:1|1:1188058_T_C:2197,147,0:1188058 1|1:0,49:49:99:1|1:1188058_T_C:2192,147,0:1188058 1|1:0,47:47:99:1|1:1188058_T_C:2115,141,0:1188058 NW_016690380.1 1321765 . T C 4873.41 . 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AC=13;AF=7.975e-03;AN=1630;BaseQRankSum=5.03;DP=37893;ExcessHet=0.0017;FS=0.000;InbreedingCoeff=0.5296;MLEAC=13;MLEAF=7.975e-03;MQ=60.00;MQRankSum=0.00;QD=18.21;ReadPosRankSum=0.00;SOR=0.206 GT:AD:DP:GQ:PGT:PID:PL:PS 0/0:48,0:48:99:.:.:0,120,1800:. 0|1:22,28:50:99:0|1:1390255_G_T:667,0,468:1390255 0|1:24,22:46:99:0|1:1390255_G_T:561,0,565:1390255 0|1:25,22:47:99:0|1:1390255_G_T:495,0,503:1390255 0/0:47,0:47:99:.:.:0,107,1243:. 0/0:48,0:48:99:.:.:0,108,1347:. 0/0:48,0:48:99:.:.:0,120,1800:. 0|1:23,26:49:99:0|1:1390255_G_T:1023,0,888:1390255 0|1:18,25:43:99:0|1:1390255_G_T:649,0,381:1390255 0/0:49,0:49:99:.:.:0,104,1182:. 0|1:23,26:49:99:0|1:1390255_G_T:616,0,485:1390255 0/1:27,24:51:99:.:.:597,0,586:. 1|1:0,47:47:99:1|1:1390255_G_T:2109,141,0:1390255 NW_016690389.1 355300 . C T 2783.44 . AC=5;AF=3.079e-03;AN=1624;BaseQRankSum=6.66;DP=37325;ExcessHet=0.0134;FS=0.000;InbreedingCoeff=0.5837;MLEAC=5;MLEAF=3.079e-03;MQ=60.00;MQRankSum=0.00;QD=14.57;ReadPosRankSum=0.00;SOR=1.277 GT:AD:DP:GQ:PL 0/0:50,0:50:99:0,120,1800 0/0:50,0:50:99:0,120,1800 0/0:50,0:50:99:0,120,1800 0/1:22,26:48:99:627,0,427 0/0:50,0:50:99:0,120,1800 0/0:51,0:51:99:0,120,1800 0/0:50,0:50:99:0,120,1800 1/1:1,47:48:99:1311,117,0 0/0:51,0:51:99:0,120,1800 0/0:50,0:50:99:0,118,1459 0/1:26,21:47:99:439,0,507 0/1:24,24:48:99:522,0,474 0/0:50,0:50:99:0,120,1800 NW_016690389.1 944844 . C T 5708.69 . AC=10;AF=6.135e-03;AN=1630;BaseQRankSum=5.98;DP=35040;ExcessHet=0.0005;FS=0.000;InbreedingCoeff=0.5555;MLEAC=10;MLEAF=6.135e-03;MQ=60.00;MQRankSum=0.00;QD=16.40;ReadPosRankSum=0.00;SOR=1.052 GT:AD:DP:GQ:PL 0/0:55,0:55:99:0,120,1800 0/0:50,0:50:99:0,105,1412 0/0:49,0:49:99:0,120,1361 0/0:47,0:47:99:0,100,1345 0/0:50,0:50:99:0,99,1220 0/0:48,0:48:99:0,120,1800 0/0:50,0:50:99:0,116,1522 0/1:27,23:50:99:551,0,1056 0/1:28,15:43:99:329,0,643 1/1:0,51:51:99:1564,153,0 1/1:0,49:49:99:1832,147,0 0/1:26,23:49:99:573,0,593 0/0:50,0:50:99:0,120,1800 NW_016690390.1 1446154 . G A 62564.2 . AC=96;AF=0.059;AN=1624;BaseQRankSum=6.42;DP=39600;ExcessHet=0.0127;FS=0.000;InbreedingCoeff=0.2281;MLEAC=100;MLEAF=0.062;MQ=60.00;MQRankSum=0.00;QD=14.09;ReadPosRankSum=0.00;SOR=0.274 GT:AD:DP:GQ:PGT:PID:PL:PS 0/1:24,27:51:99:.:.:619,0,459:. 0/1:25,26:51:99:.:.:596,0,426:. 0/1:30,21:51:99:.:.:449,0,543:. 0/0:50,0:50:99:.:.:0,120,1800:. 0/0:50,0:50:99:.:.:0,120,1800:. 0/0:51,0:51:99:.:.:0,120,1800:. 0|1:24,27:51:99:0|1:1446148_C_T:1062,0,645:1446148 0/0:48,0:48:99:.:.:0,120,1800:. 0/0:49,0:49:99:.:.:0,120,1800:. 0/0:50,0:50:99:.:.:0,120,1800:. 0|1:50,49:99:99:0|1:1446148_C_T:1881,0,1952:1446148 0/0:50,0:50:99:.:.:0,120,1800:. 0|1:29,21:50:99:0|1:1446148_C_T:795,0,812:1446148 NW_016690391.1 634666 . T C 1814.7 . AC=3;AF=1.921e-03;AN=1562;BaseQRankSum=-6.604e+00;DP=37990;ExcessHet=3.0187;FS=0.000;InbreedingCoeff=0.5937;MLEAC=3;MLEAF=1.921e-03;MQ=60.00;MQRankSum=0.00;QD=12.43;ReadPosRankSum=0.00;SOR=0.869 GT:AD:DP:GQ:PL 0/0:50,0:50:99:0,120,1800 0/0:50,0:50:99:0,120,1800 0/0:51,0:51:99:0,120,1800 0/1:17,31:48:99:778,0,388 0/0:49,0:49:99:0,120,1800 0/0:49,0:49:99:0,120,1800 0/0:50,0:50:99:0,120,1800 0/0:50,0:50:99:0,120,1800 0/0:50,0:50:99:0,120,1800 0/0:49,0:49:99:0,112,1344 0/1:27,22:49:99:503,0,734 0/1:23,26:49:99:605,0,604 0/0:50,0:50:99:0,120,1800 NW_016690391.1 747114 . C G 462863 . 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AC=46;AF=0.028;AN=1628;BaseQRankSum=0.245;DP=38695;ExcessHet=0.0000;FS=0.000;InbreedingCoeff=0.3766;MLEAC=48;MLEAF=0.029;MQ=60.00;MQRankSum=0.00;QD=14.08;ReadPosRankSum=0.00;SOR=0.317 GT:AD:DP:GQ:PL 0/1:25,24:49:99:539,0,565 1/1:0,51:51:99:1394,152,0 0/0:49,0:49:99:0,120,1800 0/1:28,22:50:99:478,0,655 0/0:49,0:49:99:0,120,1800 0/0:49,0:49:99:0,120,1800 0/0:50,0:50:99:0,120,1800 0/0:49,0:49:99:0,120,1800 0/0:48,0:48:99:0,106,1413 0/0:49,0:49:99:0,120,1800 0/1:21,28:49:99:655,0,436 0/1:26,22:48:99:462,0,566 0/1:28,22:50:99:457,0,604 NW_016690404.1 579534 . G A 278058 . AC=415;AF=0.261;AN=1588;BaseQRankSum=6.70;DP=39493;ExcessHet=-0.0000;FS=0.000;InbreedingCoeff=0.3300;MLEAC=441;MLEAF=0.278;MQ=60.00;MQRankSum=0.00;QD=18.44;ReadPosRankSum=0.00;SOR=0.291 GT:AD:DP:GQ:PGT:PID:PL:PS 0/0:49,0:49:99:.:.:0,120,1381:. 1/1:0,49:49:99:.:.:1629,147,0:. 0/1:26,24:50:99:.:.:558,0,793:. 0|1:37,12:49:99:0|1:579524_C_G:393,0,1049:579524 0/0:50,0:50:99:.:.:0,120,1800:. 0/0:48,0:48:99:.:.:0,120,1800:. 0/1:26,22:48:99:.:.:498,0,115:. 1/1:0,47:47:99:.:.:1578,141,0:. 0/0:50,0:50:99:.:.:0,120,1800:. 0/1:23,26:49:82:.:.:611,0,82:. 0/1:30,19:49:99:.:.:412,0,152:. 0/0:48,0:48:99:.:.:0,120,1800:. 0/1:15,34:49:2:.:.:837,0,2:. NW_016690404.1 824495 . G A 362878 . AC=534;AF=0.328;AN=1626;BaseQRankSum=1.79;DP=39387;ExcessHet=0.0000;FS=2.579;InbreedingCoeff=0.2876;MLEAC=553;MLEAF=0.340;MQ=60.00;MQRankSum=0.00;QD=18.47;ReadPosRankSum=0.00;SOR=0.002 GT:AD:DP:GQ:PGT:PID:PL:PS 0/0:50,0:50:99:.:.:0,120,1800:. 0/1:26,21:47:99:.:.:434,0,561:. 0/0:46,0:46:99:.:.:0,120,1800:. 0/0:48,0:48:99:.:.:0,120,1800:. 0/0:50,0:50:99:.:.:0,120,1800:. 0/1:23,25:48:99:.:.:549,0,454:. 0/1:19,29:48:99:.:.:659,0,330:. 0/1:23,26:49:99:.:.:597,0,466:. 0/0:51,0:51:99:.:.:0,120,1800:. 1/1:0,47:47:99:.:.:1339,140,0:. 1/1:0,52:52:99:.:.:1490,156,0:. 0/0:46,0:46:99:.:.:0,120,1800:. 0/0:48,0:48:99:.:.:0,108,1315:. NW_016690404.1 922878 . C T 10282.4 . AC=17;AF=0.010;AN=1622;BaseQRankSum=5.63;DP=35004;ExcessHet=3.3782;FS=0.000;InbreedingCoeff=0.4028;MLEAC=18;MLEAF=0.011;MQ=60.00;MQRankSum=0.00;QD=14.28;ReadPosRankSum=0.00;SOR=0.688 GT:AD:DP:GQ:PGT:PID:PL:PS 0/0:47,0:47:99:.:.:0,116,1233:. 0/1:22,24:46:82:.:.:472,0,82:. 0/0:48,0:48:99:.:.:0,113,1242:. 0/1:22,26:48:99:.:.:496,0,357:. 0/0:48,0:48:99:.:.:0,120,1800:. 0/1:26,23:49:99:.:.:453,0,433:. 0/1:19,28:47:48:.:.:667,0,48:. 0/0:48,0:48:99:.:.:0,120,1800:. 0/0:46,0:46:99:.:.:0,102,916:. 0/0:47,0:47:99:.:.:0,108,1107:. 0/0:46,0:46:99:.:.:0,110,1319:. 0/0:47,0:47:99:.:.:0,120,1800:. 0/0:48,0:48:99:.:.:0,120,1800:. NW_016690405.1 1024177 . A T 70282.8 . AC=110;AF=0.068;AN=1626;BaseQRankSum=-6.178e+00;DP=38745;ExcessHet=0.0000;FS=0.000;InbreedingCoeff=0.2768;MLEAC=114;MLEAF=0.070;MQ=60.00;MQRankSum=0.00;QD=15.18;ReadPosRankSum=0.00;SOR=0.893 GT:AD:DP:GQ:PGT:PID:PL:PS 0/0:48,0:48:99:.:.:0,104,1358:. 0/0:48,0:48:99:.:.:0,109,1269:. 0/0:49,0:49:99:.:.:0,120,1390:. 0/1:26,24:50:99:.:.:525,0,648:. 0/1:18,28:46:99:.:.:689,0,426:. 0/1:21,27:48:99:.:.:608,0,518:. 1/1:0,50:50:99:.:.:1386,150,0:. 0/0:49,0:49:99:.:.:0,112,1259:. 0/0:48,0:48:99:.:.:0,112,1267:. 0/0:48,0:48:99:.:.:0,120,1800:. 0/0:49,0:49:99:.:.:0,120,1800:. 0/1:24,24:48:99:.:.:545,0,617:. 0/1:25,23:48:99:.:.:474,0,621:. NW_016690407.1 376373 . C T 20409.5 . AC=27;AF=0.017;AN=1612;BaseQRankSum=5.64;DP=38535;ExcessHet=0.0000;FS=0.000;InbreedingCoeff=0.5922;MLEAC=28;MLEAF=0.017;MQ=60.00;MQRankSum=0.00;QD=21.42;ReadPosRankSum=0.00;SOR=2.125 GT:AD:DP:GQ:PL 0/1:22,27:49:99:720,0,473 0/0:50,0:50:99:0,119,1521 0/0:48,0:48:99:0,106,1367 0/0:48,0:48:99:0,119,1207 0/1:26,20:46:99:511,0,633 0/0:49,0:49:99:0,112,1138 0/1:27,22:49:99:586,0,698 0/0:49,0:49:99:0,116,864 1/1:1,47:48:99:1500,114,0 0/0:48,0:48:99:0,120,1531 0/0:49,0:49:99:0,120,1800 0/1:29,22:51:99:545,0,697 1/1:0,50:50:99:1593,150,0 NW_016690407.1 474828 . C G 3630.19 . AC=6;AF=3.695e-03;AN=1624;BaseQRankSum=-1.250e+00;DP=39284;ExcessHet=0.0201;FS=0.000;InbreedingCoeff=0.5850;MLEAC=6;MLEAF=3.695e-03;MQ=60.00;MQRankSum=0.00;QD=14.88;ReadPosRankSum=0.00;SOR=1.361 GT:AD:DP:GQ:PL 0/0:49,0:49:99:0,120,1800 0/0:48,0:48:99:0,120,1800 0/1:25,24:49:99:553,0,592 0/0:49,0:49:99:0,118,1513 0/0:48,0:48:99:0,108,1418 0/0:48,0:48:99:0,118,1393 0/0:50,0:50:99:0,120,1800 0/1:21,27:48:99:579,0,438 0/0:48,0:48:99:0,120,1800 0/1:24,24:48:99:491,0,928 1/1:0,50:50:99:1458,150,0 0/0:50,0:50:99:0,120,1800 0/0:49,0:49:99:0,120,1800 NW_016690407.1 679874 . A G 1684.13 . AC=13;AF=8.035e-03;AN=1618;BaseQRankSum=-6.526e+00;DP=37088;ExcessHet=0.0000;FS=0.000;InbreedingCoeff=0.5458;MLEAC=14;MLEAF=8.653e-03;MQ=60.00;MQRankSum=0.00;QD=3.55;ReadPosRankSum=0.00;SOR=1.394 GT:AD:DP:GQ:PL 0/0:52,0:52:99:0,120,1800 0/0:48,0:48:99:0,111,1418 0/0:48,0:48:99:0,113,1413 0/1:24,25:49:99:102,0,617 0/1:17,28:45:99:144,0,375 1/1:0,45:45:99:428,115,0 1/1:0,46:46:99:438,117,0 0/1:29,19:48:46:46,0,651 0/0:49,0:49:99:0,120,1800 0/1:27,22:49:73:73,0,595 1/1:0,45:45:99:428,115,0 0/0:50,0:50:99:0,120,1800 0/0:43,0:43:99:0,107,1272 NW_016690408.1 59361 . G A 12833.8 . AC=19;AF=0.013;AN=1460;BaseQRankSum=5.73;DP=31691;ExcessHet=0.0000;FS=0.000;InbreedingCoeff=0.5477;MLEAC=23;MLEAF=0.016;MQ=60.00;MQRankSum=0.00;QD=17.46;ReadPosRankSum=-9.580e-01;SOR=1.349 GT:AD:DP:GQ:PGT:PID:PL:PS 1/1:0,54:54:99:.:.:1612,162,0:. 0/1:33,23:56:99:.:.:520,0,714:. 0/0:50,0:50:99:.:.:0,120,1800:. 0/1:34,26:60:99:.:.:590,0,723:. 0/0:50,0:50:99:.:.:0,120,1800:. 0/0:63,0:63:99:.:.:0,120,1800:. 0/0:48,0:48:99:.:.:0,119,1332:. 0/1:27,24:51:99:.:.:556,0,588:. 0/0:54,0:54:0:.:.:0,0,278:. 1/1:0,49:49:99:.:.:1803,147,0:. 1/1:0,49:49:99:.:.:1444,146,0:. 0/1:31,24:55:99:.:.:556,0,674:. 0|1:38,19:57:99:0|1:59358_G_A:683,0,1236:59358 NW_016690408.1 451525 . T C 65341.5 . AC=154;AF=0.094;AN=1632;BaseQRankSum=-6.155e+00;DP=39629;ExcessHet=0.0000;FS=8.860;InbreedingCoeff=0.6792;MLEAC=159;MLEAF=0.097;MQ=59.99;MQRankSum=0.00;QD=13.32;ReadPosRankSum=0.00;SOR=3.160 GT:AD:DP:GQ:PGT:PID:PL:PS 1/1:0,46:47:99:.:.:492,119,0:. 1/1:0,51:51:99:.:.:499,130,0:. 0/1:21,31:52:99:.:.:566,0,439:. 1/1:0,52:53:99:.:.:509,133,0:. 1/1:0,50:50:99:.:.:1111,148,0:. 1/1:0,49:49:99:.:.:1399,140,0:. 0/1:24,24:48:99:.:.:424,0,561:. 0|1:24,26:50:99:0|1:451525_T_C:1013,0,929:451525 1|1:0,50:50:99:1|1:451525_T_C:2202,151,0:451525 1/1:1,50:51:99:.:.:1647,125,0:. 1|1:0,50:50:99:1|1:451525_T_C:2176,150,0:451525 0/1:28,24:52:99:.:.:440,0,676:. 0|1:27,24:51:99:0|1:451525_T_C:875,0,1039:451525 NW_016690408.1 710639 . C T 15291.5 . AC=17;AF=0.010;AN=1630;BaseQRankSum=6.61;DP=39238;ExcessHet=0.0000;FS=14.053;InbreedingCoeff=0.6043;MLEAC=18;MLEAF=0.011;MQ=60.00;MQRankSum=0.00;QD=24.47;ReadPosRankSum=0.00;SOR=4.161 GT:AD:DP:GQ:PGT:PID:PL:PS 0/0:101,0:101:99:.:.:0,120,1800:. 0/0:49,0:49:99:.:.:0,120,1800:. 0|1:27,22:49:99:0|1:710639_C_T:843,0,1059:710639 0|1:49,50:99:99:0|1:710639_C_T:1952,0,1907:710639 0/0:50,0:50:99:.:.:0,120,1800:. 0/0:49,0:49:99:.:.:0,120,1800:. 0/0:49,0:49:99:.:.:0,120,1800:. 0/0:49,0:49:99:.:.:0,120,1800:. 0/0:49,0:49:99:.:.:0,120,1800:. 0/0:48,0:48:99:.:.:0,120,1800:. 0|1:24,26:50:99:0|1:710639_C_T:1007,0,719:710639 0/0:50,0:50:99:.:.:0,120,1800:. 0/0:47,0:47:99:.:.:0,120,1800:. NW_016690410.1 1038646 . G A 8249.47 . AC=13;AF=7.995e-03;AN=1626;BaseQRankSum=5.35;DP=38195;ExcessHet=0.0000;FS=0.000;InbreedingCoeff=0.5457;MLEAC=14;MLEAF=8.610e-03;MQ=60.00;MQRankSum=0.00;QD=17.74;ReadPosRankSum=0.00;SOR=1.604 GT:AD:DP:GQ:PL 0/1:20,25:45:99:684,0,442 1/1:0,46:46:99:1435,138,0 0/1:21,25:46:99:674,0,459 0/0:49,0:49:99:0,120,1800 1/1:3,43:46:72:1245,72,0 0/1:21,26:47:99:624,0,485 0/1:21,27:48:99:706,0,439 0/0:16,0:16:3:0,3,45 0/0:51,0:51:15:0,15,225 0/0:31,0:31:9:0,9,135 0/0:48,0:48:99:0,99,1174 0/0:45,0:45:81:0,81,1215 0/0:50,0:50:3:0,3,45 NW_016690411.1 53619 . A T 66285.2 . AC=89;AF=0.056;AN=1598;BaseQRankSum=5.07;DP=38665;ExcessHet=-0.0000;FS=6.376;InbreedingCoeff=0.7679;MLEAC=93;MLEAF=0.058;MQ=60.00;MQRankSum=0.00;QD=24.71;ReadPosRankSum=0.00;SOR=0.001 GT:AD:DP:GQ:PL 0/0:49,0:49:99:0,120,1800 0/0:48,0:48:99:0,120,1800 0/0:47,0:47:99:0,120,1800 0/0:49,0:49:99:0,120,1800 0/0:49,0:49:99:0,111,1396 0/0:49,0:49:99:0,120,1800 0/0:49,0:49:99:0,120,1800 0/0:49,0:49:99:0,119,1326 1/1:0,50:50:99:1499,150,0 0/0:46,0:46:99:0,115,1275 0/0:48,0:48:99:0,108,1205 1/1:0,49:49:99:1470,147,0 0/1:30,20:50:99:443,0,682 NW_016690412.1 247595 . A C 304411 . AC=491;AF=0.311;AN=1580;BaseQRankSum=-1.507e+00;DP=39734;ExcessHet=0.0000;FS=0.000;InbreedingCoeff=0.1805;MLEAC=527;MLEAF=0.334;MQ=60.00;MQRankSum=0.00;QD=16.00;ReadPosRankSum=0.00;SOR=0.627 GT:AD:DP:GQ:PGT:PID:PL:PS 0/1:20,29:49:99:.:.:714,0,448:. 0/1:30,19:49:99:.:.:363,0,685:. 1/1:0,50:50:99:.:.:1385,150,0:. 0/0:49,0:49:99:.:.:0,120,1800:. 0/1:27,21:48:99:.:.:417,0,599:. 0/1:26,23:49:99:.:.:467,0,570:. 0/1:23,25:48:99:.:.:524,0,492:. 0/1:25,23:48:99:.:.:493,0,575:. 1/1:0,49:49:99:.:.:1404,147,0:. 0/1:18,29:47:99:.:.:662,0,358:. 0/0:49,0:49:99:.:.:0,119,1495:. 1/1:0,49:49:99:.:.:1358,147,0:. 1/1:0,50:50:99:.:.:1385,150,0:. NW_016690412.1 504021 . C T 16237 . AC=18;AF=0.011;AN=1634;BaseQRankSum=6.67;DP=39351;ExcessHet=0.0000;FS=0.000;InbreedingCoeff=0.6371;MLEAC=19;MLEAF=0.012;MQ=60.00;MQRankSum=0.00;QD=29.05;ReadPosRankSum=0.00;SOR=1.911 GT:AD:DP:GQ:PGT:PID:PL:PS 0|1:27,21:48:99:0|1:504021_C_T:801,0,1071:504021 1|1:0,50:50:99:1|1:504021_C_T:2250,151,0:504021 1|1:0,49:49:99:1|1:504021_C_T:2205,147,0:504021 0/0:49,0:49:99:.:.:0,118,1404:. 0|1:25,23:48:99:0|1:504021_C_T:586,0,981:504021 0/0:50,0:50:99:.:.:0,120,1800:. 0|1:31,20:51:99:0|1:504021_C_T:746,0,1241:504021 0/0:50,0:50:99:.:.:0,120,1800:. 0/0:49,0:49:99:.:.:0,120,1800:. 0|1:27,22:49:99:0|1:504021_C_T:843,0,1068:504021 1|1:0,50:50:99:1|1:504021_C_T:2250,151,0:504021 0/0:48,0:48:99:.:.:0,120,1800:. 0|1:30,19:49:99:0|1:504021_C_T:708,0,1203:504021 NW_016690414.1 22806 . A G 1.45856e+06 . AC=1172;AF=0.736;AN=1592;BaseQRankSum=-5.144e+00;DP=46373;ExcessHet=-0.0000;FS=0.000;InbreedingCoeff=0.3745;MLEAC=1257;MLEAF=0.790;MQ=59.99;MQRankSum=0.00;QD=30.44;ReadPosRankSum=0.249;SOR=0.051 GT:AD:DP:GQ:PGT:PID:PL:PS 0|1:26,22:48:99:0|1:22806_A_G:846,0,1011:22806 0|1:26,24:50:99:0|1:22806_A_G:922,0,1013:22806 0/0:51,0:51:99:.:.:0,120,1800:. 0|1:32,28:60:99:0|1:22806_A_G:1079,0,1259:22806 0|1:28,23:51:99:0|1:22806_A_G:879,0,1106:22806 0|1:35,28:63:99:0|1:22806_A_G:1065,0,1375:22806 0/0:52,0:52:99:.:.:0,120,1800:. 0|1:29,29:58:99:0|1:22806_A_G:1126,0,1104:22806 0/0:56,0:56:99:.:.:0,117,1586:. 0/0:52,0:52:99:.:.:0,120,1800:. 0|1:23,30:53:99:0|1:22806_A_G:1177,0,869:22806 1|1:0,60:60:99:1|1:22806_A_G:2654,181,0:22806 0|1:26,23:49:99:0|1:22806_A_G:881,0,1008:22806 NW_016690414.1 602214 . T G 96889.7 . AC=121;AF=0.077;AN=1562;BaseQRankSum=-6.126e+00;DP=36763;ExcessHet=-0.0000;FS=0.000;InbreedingCoeff=0.4570;MLEAC=132;MLEAF=0.085;MQ=60.00;MQRankSum=0.00;QD=21.91;ReadPosRankSum=0.00;SOR=0.778 GT:AD:DP:GQ:PGT:PID:PL:PS 0|1:29,20:49:99:0|1:602214_T_G:735,0,1150:602214 0/0:49,0:49:99:.:.:0,120,1800:. 0|1:25,25:50:99:0|1:602214_T_G:953,0,969:602214 0|1:30,20:50:99:0|1:602214_T_G:738,0,1199:602214 0/0:48,0:48:99:.:.:0,120,1800:. 0|1:27,23:50:99:0|1:602214_T_G:884,0,1064:602214 0|1:32,17:49:99:0|1:602214_T_G:592,0,1278:602214 0/0:49,0:49:99:.:.:0,120,1800:. 0|1:25,23:48:99:0|1:602214_T_G:891,0,976:602214 0/0:50,0:50:99:.:.:0,120,985:. 0/0:48,0:48:99:.:.:0,115,1356:. 0/0:48,0:48:99:.:.:0,118,1081:. 0/0:49,0:49:99:.:.:0,120,1800:. NW_016690415.1 86615 . C T 29287 . AC=46;AF=0.028;AN=1634;BaseQRankSum=6.15;DP=39081;ExcessHet=0.0006;FS=0.000;InbreedingCoeff=0.3464;MLEAC=48;MLEAF=0.029;MQ=60.00;MQRankSum=0.00;QD=14.46;ReadPosRankSum=0.00;SOR=0.918 GT:AD:DP:GQ:PL 0/0:48,0:48:99:0,120,1800 0/1:22,26:48:99:610,0,448 1/1:0,50:50:99:1535,150,0 1/1:0,51:51:99:1545,153,0 0/1:25,26:51:99:625,0,562 0/1:23,27:50:99:668,0,488 0/0:47,0:47:99:0,120,1800 0/1:27,23:50:99:555,0,595 0/1:26,24:50:99:584,0,571 0/1:21,28:49:99:711,0,454 0/0:48,0:48:99:0,119,1374 1/1:1,48:49:99:1377,120,0 0/1:28,21:49:99:474,0,608 NW_016690415.1 1026919 . A G 155344 . 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AC=14;AF=8.750e-03;AN=1600;BaseQRankSum=-6.362e+00;DP=37173;ExcessHet=3.2594;FS=0.000;InbreedingCoeff=0.4664;MLEAC=15;MLEAF=9.375e-03;MQ=60.00;MQRankSum=0.00;QD=11.82;ReadPosRankSum=0.00;SOR=0.682 GT:AD:DP:GQ:PL 0/0:49,0:49:99:0,120,1800 0/0:50,0:50:99:0,120,1800 0/0:49,0:49:99:0,120,1800 0/0:49,0:49:99:0,120,1800 0/0:50,0:50:99:0,118,1416 0/0:49,0:49:99:0,120,1800 0/0:49,0:49:99:0,120,1800 0/1:35,15:50:99:275,0,957 0/1:25,25:50:99:591,0,637 0/1:25,25:50:99:618,0,641 0/1:27,22:49:99:485,0,650 0/0:49,0:49:99:0,120,1800 0/1:21,29:50:99:713,0,496 NW_016690416.1 566433 . G A 40757.3 . AC=63;AF=0.039;AN=1622;BaseQRankSum=6.62;DP=39454;ExcessHet=0.3214;FS=0.000;InbreedingCoeff=0.2263;MLEAC=65;MLEAF=0.040;MQ=60.00;MQRankSum=0.00;QD=14.10;ReadPosRankSum=0.00;SOR=0.727 GT:AD:DP:GQ:PGT:PID:PL:PS 0/1:24,24:48:99:.:.:638,0,569:. 0/1:27,23:50:99:.:.:558,0,571:. 0/1:22,28:50:99:.:.:734,0,476:. 0|1:32,16:48:99:0|1:566433_G_A:576,0,1296:566433 0/0:50,0:50:99:.:.:0,120,1800:. 0/0:50,0:50:99:.:.:0,120,1800:. 0/0:48,0:48:99:.:.:0,120,1800:. 0/0:49,0:49:99:.:.:0,120,1800:. 0/0:49,0:49:99:.:.:0,120,1800:. 0/0:49,0:49:99:.:.:0,119,1366:. 0/0:51,0:51:99:.:.:0,105,1297:. 0/0:50,0:50:99:.:.:0,120,1800:. 0/0:50,0:50:99:.:.:0,119,1435:. NW_016690416.1 1121290 . G A 96887.2 . 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AC=13;AF=7.975e-03;AN=1630;BaseQRankSum=-6.146e+00;DP=42131;ExcessHet=0.0000;FS=0.000;InbreedingCoeff=0.5611;MLEAC=13;MLEAF=7.975e-03;MQ=60.00;MQRankSum=0.00;QD=14.34;ReadPosRankSum=-4.020e-01;SOR=1.354 GT:AD:DP:GQ:PL 0/0:49,0:49:99:0,117,1299 0/0:50,0:50:99:0,106,1299 0/1:28,21:49:99:437,0,702 1/1:0,50:50:99:1299,148,0 0/1:29,20:49:99:378,0,741 0/0:54,0:54:99:0,120,1800 0/0:47,0:47:99:0,120,1800 0/1:24,26:50:99:559,0,553 0/0:51,0:51:99:0,120,1800 0/0:51,0:51:99:0,115,1349 1/1:0,50:51:99:1275,147,0 0/1:29,24:53:99:510,0,714 0/1:29,21:50:99:419,0,766 NW_016690425.1 84531 . C A 20418.6 . 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