#NEXUS BEGIN DATA; dimensions ntax=44 nchar=548; format datatype=mixed(DNA:1-518,Restriction:519-548) interleave=yes gap=- missing=?; matrix [trnCycf6 SEQS, 518 chars] Archibaccharis_asperifolia_KX063859.1 CTTGGAAATC-CTT-GAATCTAAAATTCAAA------GAAAGATTATATTGGATGGATTTTTTTTATAGTTTATAGAAAAC-----------------------AAAAAGTGCAAAAAAATTATTTTTTTTTTTT-AGACCCGTCGTCAAGAGTATAATATACTATCTCCCAACTCCTTCAGAGAGACAATCGGGAAAGGGTACGAA-----TTAGATCAAATAGG-----AAATAAAAGTATGTAATAGATAGCAA------------------TTTTTTTT--ACTTTGAAGGGCAAGAAAAAGGAATGGGTCTCTTTTTTTATTACTAG----------ATAGAATAGATGTTCCATTCCATTAGTAACATTCCCTTA-TAGTGTCATTGTATATTTTACTTGTATTTAGTCTTTCCCGATTAGAAATCAT------ATAGGAATTTTTGAAATGGATTTATTTGACTGGTTCATCAATAGTGTTCGGCCAGAATCCCTTTTTGACTCTGGACCA Baccharis_pilularis_H4578 CTTGGAAATC-CTT-GAATCTAAAATTCAAA------GAAAGATTATATTGGATGGATTTTTTT-ATAGTTTATAGAAAAC-----------------------AAAAAGTGCAAAAAA-TTATTTTTTTTT----AGACCCGTCGTCAAGAGTATAATATACTATCTACCAACTCCTTCAGAGAGACAATCGGGAAAGGGTACGAA-----TTAGATCAAATAGG-----AAATAAAAGTATGTAATAGATAGCAA------------------TTTTTTTT--ACTTTGAAGGGCAAGAAAAAGGAATGGGTCTCTTTTTTTATTACTAG----------ATAGAATAGATGTTCCATTCCATTAGTAACATTCCCTTA-TAGTGTCATTGTATATTTTACTTGTATTTAGTCTTTCCCGATTAGAAATCGT------ATAGGAATTTTTGAAATGGATTTATTTGACTGGTTCATCAATAGTGTTCGGCCAGAATCCCTTTTTGACTCTGGACCA Baccharis_salicifolia_AA1983 CTTGGAAATC-CTT-GAATCTAAAATTCAAA------GAAAGATTATATTGGATGGATTTTTTT-ATAGTTTATAGAAAAC-----------------------AAAAAGTGCAAAAAAATTATTTTTTTTTT---AGACCCGTCGTCAAGAGTATAATATACTATCTACCAACTCCTTCAGAGAGACAATCGGGAAAGGGTACGAA-----TTAGATCAAATAGG-----AAATAAAAGTATGTAATAGATAGCAA------------------TTTTTTTTT-ACTTTGAAGGGCAAGAAAAAGGAATGGGTCTCTTTTTTTATTACTAG----------ATAGAATAGATGTTCCATTCCATTAGTAACATTCCCTTA-TAGTGTCATTGTATATTTTACTTGTATTTAGTCTTTCCCGATTAGAAATCAT------ATAGGAATTTTTGAAATGGATTTATTTGACTGGTTCATCAATAGTGTTCGGCCAGAATCCCTTTTTGACTCTGGACCA Diplostephium_cinereum_KX063889.1 CTTGGAAATC-CTT-GAATCTAAAATTCAAA------GAAAGATTATATTGGATGGATTTTTTT-ATAGTTTATAGAAAAC-----------------------AAAAAATGCAAAAAAATTATTTTTTTTTTTT-AGACCCGTCGTCAAGAGTATAATATACTATCTCCCAACTCCTTCAGAGAGACAATCGGGAAAGGGTACGAA-----TTAGATCAAATAGGAAATAAAATAAAAGTATGTAATAGATAGCAA------------------TTTTTTTT--ACTTTGAAGGGCAAGAAAAAGGAATGGGTCTCTTTTTTTATTACTAG----------ATAGAATAGATGTTCCATTCCATTAGTAACATTCCCTTA-TAGTGTCATTGTATATTTTACTTGTATTTAGTCTTTCCCGATTAGAAATCAT------ATAGGAATTTTTGAAATGGATTTATTTGACTGGTTCATCAATAGTGTTCGGCCAGAATCCCTTTTTGACTCTGGACCA Diplostephium_ericoides_KX063892.1 CTTGGAAATC-CTT-GAATCTCAAATTCAAA------GAAAGATTATATTGGATGGATTTTTTT-ATAGTTTATAGAAAAC-----------------------AAAAAGTGCAAAAAAATTATTTTTTTTTTT--AGACCCGTCGTCAAGAGTATAATATACTATCTCCCAACTCCTTCAGAGAGACAATCGGGAAAGGGTACGAA-----TTAGATCAAATAGG-----AAATAAAAGTATGTAATAGATAGCAA------------------TTTTTTTT--ACTTTGAAGGGCAAGAAAAAGGAATGGGTCTCTTTTTTTATTACTAG----------ATAGAATAGATGTTCCATTCCATTAGTAACATTCCCTTA-TAGTGTCATTGTATATTTTACTTGTATTTAGTCTTTCCCGATTAGAAATCAT------ATAGGAATTTTTGAAATGGATTTATTTGACTGGTTCATCAATAGTGTTCGGCCAGAATCCCTTTTTGACTCTGGACCA Hinterhubera_ericoides_KX063910.1 ?????AAATCTCTTAGAATCTAAAATTCAAA------GAAAGATAATATTGGATGGATTTTTTT-ATAGTTTATAGAAAAC-----------------------AAAAAGTGCAAA----TTTTTTTTTTTTTT--AGACCCGTCGTCAAGAGTATAATATACTATCTCCCAACTCTTTCAGAGAGACAATCGGGAAAGGGTACGAA-----TTAGATCAAATAGG-----AAATAAAAGTATGTAATAGATAGCAA------------------TTTCTTTT--ACTTTGAAGGGCAAGAAAAAGGAATGGGTCTCTTTTTT-ATTACTAG----------ATAGAATAGATGTTCCATT-----AGTAACATTCCCTTA-TAGTGTCATTGTATATTTTACTTGTATTTAGTCTTTCCCGATTAGAAATCAT------ATAGGAATTTTTGAAATGGATTTATTTGACTGGTTCATCAATAGTGTTCG-CCAGAATCCCTTTTTGACTCTGGACCA Laennecia_sophiifolia_KX063899.1 CTTGGAAATC-CTT-GAATCTAAAATTCAAA------GAAAGATTATATTGGATGGATTTTTTT-ATAGTTTATAGAAAA------------------------AAAAAGTGCAAAAAAATTATTTTTTTTT----AGACCCGTCGTCAAGAGTATAATATACTATCTCCCAACTCCTTCAGAGAGACAATCGGGAAAGGGTACGAA-----TTAGATCAAATAGG-----AAATAAAAGTATGTAATAGATAGCAA------------------TTTTTTTTT-ACTTTGAAGGGCAAAAAAAAGGAAAGGGTCTCTTTTTTTATTACTAG----------ATAGAATAGATGTTCCATTCCATTAGTAACATTCCCTTA-TAGTGTCATTGTATATTTTACTTGTATTTAGTCTTTCCCGATTAGAAATCAT------ATAGGAATTTTTGAAATGGATTTATTTGACTGGTTCATCAATAGTATTCGGCCAGAATCCCTTTTTGACTCTGGACCA Lagenophora_cuchumatanica_KX063879.1 CTTGGAAATC-CTT-GAATCTAAAATTCAAA------GAAAGATTATATTGGATGGATTTTTTT-ATAGTTTATAGAAAAC-----------------------AAAAAGTGCAAAAA--TTTTTTTTTTT-----AGACCCGTCGTCAAGAGTATAATATACTATCTCCCAACTCCTTCAGAGAGACAATCGGGAAAGGGTACGAA-----TTAGATCAAATAGG-----AAATAAAAGTATGTAATAGATAGCAA------------------TTTTTTTTT-ACTTTGAAGGGCAAGAAAAAGGAATGGGTCTCTTTTTTTATTACTAG----------ATAGAATAGATGTTCCATTCCATTAGTAACATTCCCTTA-TAGTGTCATTGTATATTTTACTTGTATTTAGTCTTTCCCGATTAGAAATCAT------ATAGGAATTTTTGAAATGGATTTATTTGACTGGTTCATCAATAGTGTTCGGCCAGAATCCCTTTTTGACTCTGGAC?? Oclemena_nemoralis_LB1 CTTGGAAATC-CTT-GAATCTAAAATTAAAA------GAAAGATTATATTGGATGGATTTTTTT-ATAGTTTATAGAAAAC-----------------------AAAAAGTGCAAAAAAATTATTTTTTTTT----AGACCCGTCGTCAAGAGTATAATATACTATCGCCCAACTCCTTCAGAGAGACAATCGGGAAAGGGTACGAA-----TTAGATCAAATAGG-----AAATAAAAGTATGTAATAGATAGCAA------------------TTTTTTTTT-ACTTTGAAGGGCAAGAAAAAGGAAAGGGTCTCTTTTTTTATTACTAGACTAG-----ATAGAATAGATGTTCCATT-----AGTAACATTCCCTTA-TAGTGTCATTGTATATTTTACTTGTATTTAGTCTTTCCCGATTAGAAATCAT------ATAGGAATTTTTGAAATGGATTTATTTGACTGGTTCATCAATAGTGTTCGGCCAGAATCCCTTTTTGACTCTGGACCA Arida_carnosa_GU480694.1 CTTGCAAATC-CTT-GAATCTAAAATTAAAA------GAAAGATTATATTGGATGGATTTTTTTTATAGTTTATAGAAAACCTTTTTTATAGTTTATAGAAAACAAAAAGTGCAAAAAAACAATTTTTTTT-----AGACCCGTCGTCAAGAGTATAATATACTATCGCCCAACTCCTTCAGAGAGACAATCGGGAAAGGGTACGAA-----TTAAATCAAATAGG-----AAATAAAAGTATGTAATAGGTAGCAA------------------TTTTTTTTTTACTTTGAAGGGCAAGAAAAAGGAAAGGGTCTCTTTTTTTATTACTAGACTAGACTAGATAGAATAGATGTTCCATT-----AGTAACATTCCCTTA-TAGTGTCATTGTATATTTTACTTGTATTTAGTCTTTCCTGATTAGAAATCAT------ATAGGAATTTTTGAAATGGATTTATTTGACTGGTTCATCAATAGTGTTCGGCCAGAATCCCTTTTTGACTCTGGACCA Eurybia_conspicua_GU480665.1 CTTGGAAATC-CTT-GAATCTAAAATTAAAA------GAAAGATTATATTGGATGGATTTTTTT-ATAGTTTATAGAAAAC-----------------------AAAAAGTGCAAAAAAATTCTTTTTTTTTT---AGACCCGTCGTCAAGAGTATAATATACTATCGCCCAACTCCTTCAGAGAGACAATAGGGAAAGAGTACGAA-----TTAAATCAAATAGG-----AAATAAAAGTATGTAATAGATAGCAA------------------TTTTTTTT--ACTTTGAAGGGCAAGAAAAAGGAAAGGGTCTCTTTTTTTATTACTAGACTAG-----ATAGAATAGATGTTCCATT-----AGTAACATTCCCTTA-TAGTGTCATTGTATATTTTACTTGTATTTAGTCTTTCCCGATTAGAAATCATCATCATATAGGAATTTTTGAAATGGATTTATTTGACTGGTTCATCAATAGTGTTCGGCCAGAATCCCTTTTTGACTCTGGACCA Eurybia_macrophylla_GU480669.1 CTTGGAAATC-CTT-GAATCTAAAATGAAAA------GAAAGATTATATTGGATGGATTTTTTT-ATAGTTTATAGAAAAC-----------------------AAAAAGTGCAAAAAAATTCTTTTTTTTT----AGACCCGTCGTCAAGAGTATAATATACTATCGCCCAACTCCTTCAGAGAGACAATAGGGAAAGAGTACGAA-----TTAAATCAAATAGG-----AAATAAAAGTATGTAATAGATAGCAA------------------TTTTTTTT--ACTTTGAAGGGCAAGAAAAAGGAAAGGGTCTCTTTTTTTATTACTAGACTAG-----ATAGAATAGATGTTCCATT-----AGTAACATTCCCTTA-TAGTGTCATTGTATATTTTACTTGTATTTAGTCTTTCCCGATTAGAAATCATCATCATATAGGAATTTTTGAAATGGATTTATTTGACTGGTTCATCAATAGTGTTCGGCCAGAATCCCTTTTTGACTCTGGACCA Eurybia_radula_GU480659.1 CTTGGAAATC-CTT-GAATCTAAAATGAAAA------GAAAGATTATATTGGATGGATTTTTTT-ATAGTTTATAGAAAAC-----------------------AAAAAGTGCAAAAAAATTCTTTTTTTTTT---AGACCCGTCGTCAAGAGTATAATATACTATCGCCCAACTCCTTCAGAGAGACAATAGGGAAAGAGTACGAA-----TTAAATCAAATAGG-----AAATAAAAGTATGTAATAGATAGCAA------------------TTTTTTTT--ACTTTGAAGGGCAAGAAAAAGGAAAGGGTCTCTTTTTTTATTACTAGACTAG-----ATAGAATAGATGTTCCATT-----AGTAACATTCCCTTA-TAGTGTCATTGTATATTTTACTTGTATTTAGTCTTTCCCGATTAGAAATCATCATCATATAGGAATTTTTGAAATGGATTTATTTGACTGGTTCATCAATAGTGTTCGGCCAGAATCCCTTTTTGACTCTGGACCA Herrickia_glauca_GU480679.1 CTTGGAAATC-CTT-GAATCTAAAATTAAAA------GAAAGATTATATTGGATGGATTTTTTTTATAGTTTATAGAAAAC-TTTTTTATAGTTTATAGAAAACAAAAAGTGCAAAAAAATAATTTTTTTTT----AGACCCGTCGTCAAGAGTATAATAT-----CGCCCAACTCCTTCAGAGAGACAATCGGGAAAGGGTACGAA-----TTAAATCAAATAGG-----AAATAAAAGTATGTAATAGATAGCAA------------------TTTTTTTT--ACTTTGAAGGGCAAGAAAAAAGAAAGGGTCTCTTTTTTTATTACTAGACTAG-----ATAGAATAGATGTTCCATT-----AGTAACATTCCCTTA-TAGTGTCATTGTATATTTTACTTGTATTTAGTCTTTCCTGATTAGAAATCAT------ATAGGAATTTTTGAAATGGATTTATTTGACCGGTTCATCAATAGTGTTCGGCCAGAATCCCTTTTTGACTCTGGACCA Herrickia_kingii_barnebyana_GU480675.1 CTTGGAAATC-CTT-GAATCTAAAATTAAAA------GAAAGATTATATTGGATGGATTTTTTTTATAGTTTATAGAAAAC-----------------------AAAAAGTGCAAAAAAATTATTTTTTTTT----AGACCCGTCGTCAAGAGTATAATATACTATCGCCCAACTCCTTCAGAGAGACAATCGGGAAAGGGTACGAA-----TTAAATCAAATAGG-----AAATAAAAGTATGTAATAGATAGCAA------------------TTTTTTTT--ACTTTGAAGGGCAAGAAAAAAGAAAGGGTCTCTTTTTTTATTACTAGACTAG-----ATAGAATAGATGTTCCATT-----AGTAACATTCCCTTA-TAGTGTCATTGTATATTTTACTTGTATTTAGTCTTTCCTGATTAGAAATCAT------ATAGGAATTTTTGAAATGGATTTATTTGACTGGTTCATCAATAGTGTTCGGCCAGAATCCCTTTTTGACTCTGGACCA Machaeranthera_tanacetifolia_GU480688.1 CTTGGAAATC-CTT-GAATCTAAAATTAAAATTAAAAGAAAGATTATATTGGATGGATTTTTTTTATAGTTTATAGAAAAC-TTTTTTATAGTTTATAGAAAACAAAAAGTGCAAAAAAATAATTTTTTTT-----AGACCCGTCGTCAAGAGTATAATATACTATCGCCCAACTCCTTCAGAGAGACAATCGGGAAAGGGTACGAA-----GTAAATCAAATAGG-----AAATAAAAGTATGTAATAGATAGCAA------------------TTTTTTTTTTACTTTGAAGGGCAAGAAAAAGGAAAGGGTCTCCTTTTTTATTACTAGACTAG-----ATAGAATAGATGTTCCATT-----AGTAACATTCCCTTA-TAGTGTCATTGTATATTTTACTTGTATTTAGTCTTTCCTGATTAGAAATCAT------ATAGGAATTTTTGAAATGGATTTATTTGACTGGTTCATCAATAGTGTTCGGCCAGAATCCCTTTTTGACTCTGGACCA Oreostemma_alpigenum_alpigenum_GU480681.1 CTTGGAAATC-CTT-GAATCTAAAATGAAAA------GAAAGATTATATTGGAAGGATTTTTTTTATAGTTTATAGAAAAC-----------------------AAAAAGTGCAAAAAAATTATTTTTTTTTTT--AGACCCGTCGTCAAGAGTATAATATACTATCGCCCAACTCCTTCAGAGAGACAATCGGGAAAGGGTACGAA-----TTAAATCAAATAGG-----AAATAAAAGTATGTAATAGATAGCAA------------------TTTTTTTT--ACTTTGAAGGGCAAGAAAAAGGAAAGGGTCTCTTTTTTTATTACTAGACTAG-----ATAGA-----TGTTCCATT-----AGTAACATTCCCTTA-TAGTGTCATTGTATATTTTACTTGTATTTAGTCTTTCCCGATTAGAAATCAT------ATAGGAATTTTTGAAATGGATTTATTTGACTGGTTCATCAATAGTGTTCGGCCAGAATCCCTTTTTGACTCTGGACCA Oreostemma_peirsonii_GU480684.1 CTTGGAAATC-CTT-GAATCTAAAATTAAAA------GAAAGATTATATTGGAAGGATTTTTTTTATAGTTTATAGAAAAC-----------------------AAAAAGTGCAAAAAAATTATTTTTTTTTT---AGACCCGTCGTCAAGAGTATAATATACTATCGCCCAACTCCTTCAGAGAGACAATCGGGAAAGGGTACGAA-----TTAAATCAAATAGG-----AAATAAAAGTATGTAATAGATAGCAATTTTTTTTACTTTGGCAATTTTTTTT--ACTTTGAAGGGCAAGAAAAAGGAAAGGGTCTCTTTTTTTATTACTAGACTAG-----ATAGA-----TGTTCCATT-----AGTAACATTCCCTTA-TAGTGTCATTGTATATTTTACTTGTATTTAGTCTTTCCCGATTAGAAATCAT------ATAGGAATTTTTGAAATGGATTTATTTGACTGGTTCATCAATAGTGTTCGGCCAGAATCCCTTTTTGACTCTGGACCA Doel_infirma_S10716 CTTGGAAATC-CTT-GAATCTAAAATTAAAA------GAAAGATTATATTGGATGGATTTTTTTTATAGTTTATAGAAAAC-----------------------AAAAAGTGCAAAAAAATTATTTTTTTTT----AGACCCGTCGTCAAGAGTATAATATACTATCGCCCAACTCCTTCAGAGAGACAATCGGGAAAGGGTACGAA-----TTAGATCAAATAGG-----AAATAAAAGTATGTAATAGATAGCAA------------------TTTTTTTT--ACTTTGAAGGGCAAGAAAAAGGAAAGGGTCTCTTTTTTTATTACTAGACTAG-----ATAGAATAGATGTTCCATT-----AGTAACATTCCCTTA-TAGTGTCATTGTATATTTTACTTGTATTTAGTCTTTCCCGATTAGAAATCAT------ATAGGAATTTTTGAAATGGATTTATTTGACTGGTTCATCAATAGTGTTCGGCCAGAATCCCTTTTTGACTCTGGACCA Doel_sericocarpoides_S10531 CTTGGAAATC-CTT-GAATCTAAAATGAAAA------GAAAGATTATATTGGATGGATTTTTTTTATAGTTTATAGAAAAC-----------------------AAAAAGTGCAAAAAAATTATTTTTTTTT----AGACCCGTCGTCAAGAGTATAATATACTATCGCCCAACTCCTTCAGAGAGACAATCGGGAAAGGGTACGAA-----TTAGATCAAATAGG-----AAATAAAAGTATGTAATAGATAGCAA------------------TTTTTTTT--ACTTTGAAGGGCAAGAAAAAGGAAAGGGTCTCTTTTTTTATTACTAGACTAG-----ATAGAATAGATGTTCCATT-----AGTAACATTCCCTTA-TAGTGTCATTGTATATTTTACTTGTATTTAGTCTTTCCCGATTAGAAATCAT------ATAGGAATTTTTGAAATGGATTTATTTGACTGGTTCATCAATAGTGTTCGGCCAGAATCCCTTTTTGACTCTGGACCA Doel_umbellata_G21464 CTTGGAAATC-CTT-GAATCTAAAATTAAAA------GAAAGATTATATTGGATGGATTTTTTTTATAGTTTATAGAAAAC-----------------------AAAAAGTGCAAAAAAATTATTTTTTTTT----AGACCCGTCGTCAAGAGTATAATATACTATCGCCCAACTCCTTCAGAGAGACAATCGGGAAAGGGTACGAA-----TTAGATCAAATAGG-----AAATAAAAGTATGTAATAGATAGCAA------------------TTTTTTTT--ACTTTGAAGGGCAAGAAAAAGGAAAGGGTCTCTTTTTTTATTACTAGACTAG-----ATAGAATAGATGTTCCATT-----AGTAACATTCCCTTA-TAGTGTCATTGTATATTTTACTTGTATTTAGTCTTTCCCGATTAGAAATCAT------ATAGGAATTTTTGAAATGGATTTATTTGACTGGTTCATCAATAGTGTTCGGCCAGAATCCCTTTTTGACTCTGGACCA Doel_umbellata_S11044 CTTGGAAATC-CTT-GAATCTAAAATTAAAA------GAAAGATTATATTGGATGGATTTTTTTTATAGTTTATAGAAAAC-----------------------AAAAAGTGCAAAAAAATTATTTTTTTTT----AGACCCGTCGTCAAGAGTATAATATACTATCGCCCAACTCCTTCAGAGAGACAATCGGGAAAGGGTACGAA-----TTAGATCAAATAGG-----AAATAAAAGTATGTAATAGATAGCAA------------------TTTTTTTT--ACTTTGAAGGGCAAGAAAAAGGAAAGGGTCTCTTTTTTTATTACTAGACTAG-----ATAGAATAGATGTTCCATT-----AGTAACATTCCCTTA-TAGTGTCATTGTATATTTTACTTGTATTTAGTCTTTCCCGATTAGAAATCAT------ATAGGAATTTTTGAAATGGATTTATTTGACTGGTTCATCAATAGTGTTCGGCCAGAATCCCTTTTTGACTCTGGACCA Doel_umbellata_SS11185 CTTGGAAATC-CTT-GAATCTAAAATTAAAA------GAAAGATTATATTGGATGGATTTTTTTTATAGTTTATAGAAAAC-----------------------AAAAAGTGCAAAAAAATTATTTTTTTTT----AGACCCGTCGTCAAGAGTATAATATACTATCGCCCAACTCCTTCAGAGAGACAATCGGGAAAGGGTACGAA-----TTAGATCAAATAGG-----AAATAAAAGTATGTAATAGATAGCAA------------------TTTTTTTT--ACTTTGAAGGGCAAGAAAAAGGAAAGGGTCTCTTTTTTTATTACTAGACTAG-----ATAGAATAGATGTTCCATT-----AGTAACATTCCCTTA-TAGTGTCATTGTATATTTTACTTGTATTTAGTCTTTCCCGATTAGAAATCAT------ATAGGAATTTTTGAAATGGATTTATTTGACTGGTTCATCAATAGTGTTCGGCCAGAATCCCTTTTTGACTCTGGACCA Euceph_breweri_SH8736 CTTGGAAATC-CTT-GAATCTAAAATTCAAA------GAAAGATTATATTGGATGGATTTTTTTTATAGTTTATAGAAAAC-----------------------AAAAAGTGCAAAAAAATTATTTTTTTTTTTT-AGACCCGTCGTCAAGAGTATAATATACTATCTCCCAACTCCTTCAGAGAGACAATCGGGAAAGGGTACGAATTAGTTTAGATCAAATAGG-----AAATAAAAGTATGTAATAGATAGCAA------------------TTTTTTTT--ACTTTGAAGGGCAAGAAAAAGGAATGGGTCTCTTTTTTTATTACTAG----------ATAGAATAGATGTTCCATTCCATTAGTAACATTCCCTTAATAGTGTCATTGTATATTTTACTTGTATTTAGTCTTTCCCGATTAGAAATCAT------ATAGGAATTTTTGAA----ATTTATTTGACTGGTTCATCAATAGTGTTCGGCCAGAATCCCTTTTTGACTCTGGACCA Euceph_breweri_E7865 CTTGGAAATC-CTT-GAATCTAAAATTCAAA------GAAAGATTATATTGGATGGATTTTTTTTATAGTTTATAGAAAAC-----------------------AAAAAGTGCAAAAAAATTATTTTTTTTTTTTTAGACCCGTCGTCAAGAGTATAATATACTATCTCCCAACTCCTTCAGAGAGACAATCGGGAAAGGGTACGAATTAGTTTAGATCAAATAGG-----AAATAAAAGTATGTAATAGATAGCAA------------------TTTTTTTT--ACTTTGAAGGGCAAGAAAAAGGAATGGGTCTCTTTTTTTATTACTAG----------ATAGAATAGATGTTCCATTCCATTAGTAACATTCCCTTAATAGTGTCATTGTATATTTTACTTGTATTTAGTCTTTCCCGATTAGAAATCAT------ATAGGAATTTTTGAA----ATTTATTTGACTGGTTCATCAATAGTGTTCGGCCAGAATCCCTTTTTGACTCTGGACCA Euceph_elegans_B10488 CTTGGAAATC-CTT-GAATCTAAAATTAAAA------GAAAGATTATATTGGATGGATTTTTTTTATAGTTTATAGAAAAC-----------------------AAAAAGTGCAAAAAAATTATTTTTTTTT----AGACCCGTCGTCAAGAGTATAATATACTATCGCCCAACTCCTTCAGAGAGACAATCGGGAAAGGGTACGAA-----TTAGATCAAATAGG-----AAATAAAAGTATGTAATAGATAGCAA------------------TTTTTTTT--ACTTTGAAGGGCAAGAAAAAGGAAAGGGTCTCTTTTTTTATTACTAGACTAG-----ATAGAATAGATGTTCCATT-----AGTAACATTCCCTTA-TAGTGTCATTGTATATTTTACTTGTATTTAGTCTTTCCCGATTAGAAATCAT------ATAGGAATTTTTGAAATGGATTTATTTGACTGGTTCATCAATAGTGTTCGGCCAGAATCCCTTTTTGACTCTGGACCA Euceph_elegans_H19500 CTTGGAAATC-CTT-GAATCTAAAATTAAAA------GAAAGATTATATTGGATGGATTTTTTTTATAGTTTATAGAAAAC-----------------------AAAAAGTGCAAAAAAATTATTTTTTTTT----AGACCCGTCGTCAAGAGTATAATATACTATCGCCCAACTCCTTCAGAGAGACAATCGGGAAAGGGTACGAA-----TTAGATCAAATAGG-----AAATAAAAGTATGTAATAGATAGCAA------------------TTTTTTTT--ACTTTGAAGGGCAAGAAAAAGGAAAGGGTCTCTTTTTTTATTACTAGACTAG-----ATAGAATAGATGTTCCATT-----AGTAACATTCCCTTA-TAGTGTCATTGTATATTTTACTTGTATTTAGTCTTTCCCGATTAGAAATCAT------ATAGGAATTTTTGAAATGGATTTATTTGACTGGTTCATCAATAGTGTTCGGCCAGAATCCCTTTTTGACTCTGGACCA Euceph_elegans_GD1844 CTTGGAAATC-CTT-GAATCTAAAATTAAAA------GAAAGATTATATTGGATGGATTTTTTTTATAGTTTATAGAAAAC-----------------------AAAAAGTGCAAAAAAATTATTTTTTTTT----AGACCCGTCGTCAAGAGTATAATATACTATCGCCCAACTCCTTCAGAGAGACAATCGGGAAAGGGTACGAA-----TTAGATCAAATAGG-----AAATAAAAGTATGTAATAGATAGCAA------------------TTTTTTTT--ACTTTGAAGGGCAAGAAAAAGGAAAGGGTCTCTTTTTTTATTACTAGACTAG-----ATAGAATAGATGTTCCATT-----AGTAACATTCCCTTA-TAGTGTCATTGTATATTTTACTTGTATTTAGTCTTTCCCGATTAGAAATCAT------ATAGGAATTTTTGAAATGGATTTATTTGACTGGTTCATCAATAGTGTTCGGCCAGAATCCCTTTTTGACTCTGGACCA Euceph_elegans_A1334 CTTGGAAATC-CTT-GAATCTAAAATTAAAA------GAAAGATTATATTGGATGGATTTTTTTTATAGTTTATAGAAAAC-----------------------AAAAAGTGCAAAAAAATTATTTTTTTTT----AGACCCGTCGTCAAGAGTATAATATACTATCGCCCAACTCCTTCAGAGAGACAATCGGGAAAGGGTACGAA-----TTAGATCAAATAGG-----AAATAAAAGTATGTAATAGATAGCAA------------------TTTTTTTT--ACTTTGAAGGGCAAGAAAAAGGAAAGGGTCTCTTTTTTTATTACTAGACTAG-----ATAGAATAGATGTTCCATT-----AGTAACATTCCCTTA-TAGTGTCATTGTATATTTTACTTGTATTTAGTCTTTCCCGATTAGAAATCAT------ATAGGAATTTTTGAAATGGATTTATTTGACTGGTTCATCAATAGTGTTCGGCCAGAATCCCTTTTTGACTCTGGACCA Euceph_engelmannii_H3731 CTTGGAAATC-CTT-GAATCTAAAATTCAAA------GAAAGATTATATTGGATGGATTTTTTTTATAGTTTATAGAAAAC-----------------------AAAAAGTGCAAAAAAATTATTTTTTTTTTTT-AGACCCGTCGTCAAGAGTATAATATACTATCTCCCAACTCCTTCAGAGAGACAATCGGGAAAGGGTACGAATTAGTTTAGATCAAATAGG-----AAATAAAAGTATGTAATAGATAGCAA------------------TTTTTTTT--ACTTTGAAGGGCAAGAAAAAGGAATGGGTCTCTTTTTTTATTACTAG----------ATAGAATAGATGTTCCATTCCATTAGTAACATTCCCTTAATAGTGTCATTGTATATTTTACTTGTATTTAGTCTTTCCCGATTAGAAATCAT------ATAGGAATTTTTGAA----ATTTATTTGACTGGTTCATCAATAGTGTTCGGCCAGAATCCCTTTTTGACTCTGGACCA Euceph_glabratus_K16314 CTTGGAAATC-CTT-GAATCTAAAATTCAAA------GAAAGATTATATTGGATGGATTTTTTTTATAGTTTATAGAAAAC-----------------------AAAAAGTGCAAAAAAATTATTTTTTTTTTT--AGACCCGTCGTCAAGAGTATAATATACTATCTCCCAACTCCTTCAGAGAGACAATCGGGAAAGGGTACGAATTAGTTTAGATCAAATAGG-----AAATAAAAGTATGTAATAGATAGCAA------------------TTTTTTTT--ACTTTGAAGGGCAAGAAAAAGGAATGGGTCTCTTTTTTTATTACTAG----------ATAGAATAGATGTTCCATTCCATTAGTAACATTCCCTTAATAGTGTCATTGTATATTTTACTTGTATTTAGTCTTTCCCGATTAGAAATCAT------ATAGGAATTTTTGAA----ATTTATTTGACTGGTTCATCAATAGTGTTCGGCCAGAATCCCTTTTTGACTCTGGACCA Euceph_glaucescens_K81115 CTTGGAAATC-CTT-GAATCTAAAATTCAAA------GAAAGATTATATTGGATGGATTTTTTTTATAGTTTATAGAAAAC-----------------------AAAAAGTGCAAAAAAATTATTTTTTTTTTTT-AGACCCGTCGTCAAGAGTATAATATACTATCTCCCAACTCCTTCAGAGAGACAATCGGGAAAGGGTACGAATTAGTTTAGATCAAATAGG-----AAATAAAAGTATGTAATAGATAGCAA------------------TTTTTTTT--ACTTTGAAGGGCAAGAAAAAGGAATGGGTCTCTTTTTTTATTACTAG----------ATAGAATAGATGTTCCATTCCATTAGTAACATTCCCTTAATAGTGTCATTGTATATTTTACTTGTATTTAGTCTTTCCCGATTAGAAATCAT------ATAGGAATTTTTGAA----ATTTATTTGACTGGTTCATCAATAGTGTTCGGCCAGAATCCCTTTTTGACTCTGGACCA Euceph_glaucescens_SX10273 CTTGGAAATC-CTT-GAATCTAAAATTCAAA------GAAAGATTATATTGGATGGATTTTTTTTATAGTTTATAGAAAAC-----------------------AAAAAGTGCAAAAAAATTATTTTTTTTTTTT-AGACCCGTCGTCAAGAGTATAATATACTATCTCCCAACTCCTTCAGAGAGACAATCGGGAAAGGGTACGAATTAGTTTAGATCAAATAGG-----AAATAAAAGTATGTAATAGATAGCAA------------------TTTTTTTT--ACTTTGAAGGGCAAGAAAAAGGAATGGGTCTCTTTTTTTATTACTAG----------ATAGAATAGATGTTCCATTCCATTAGTAACATTCCCTTAATAGTGTCATTGTATATTTTACTTGTATTTAGTCTTTCCCGATTAGAAATCAT------ATAGGAATTTTTGAA----ATTTATTTGACTGGTTCATCAATAGTGTTCGGCCAGAATCCCTTTTTGACTCTGGACCA Euceph_gormanii_SX10265 CTTGGAAATC-CTT-GAATCTAAAATTCAAA------GAAAGATTATATTGGATGGATTTTTTTTATAGTTTATAGAAAAC-----------------------AAAAAGTGCAAAAAAATTATTTTTTTTTTTT-AGACCCGTCGTCAAGAGTATAATATACTATCTCCCAACTCCTTCAGAGAGACAATCGGGAAAGGGTACGAATTAGTTTAGATCAAATAGG-----AAATAAAAGTATGTAATAGATAGCAA------------------TTTTTTTT--ACTTTGAAGGGCAAGAAAAAGGAATGGGTCTCTTTTTTTATTACTAG----------ATAGAATAGATGTTCCATTCCATTAGTAACATTCCCTTAATAGTGTCATTGTATATTTTACTTGTATTTAGTCTTTCCCGATTAGAAATCAT------ATAGGAATTTTTGAA----ATTTATTTGACTGGTTCATCAATAGTGTTCGGCCAGAATCCCTTTTTGACTCTGGACCA Euceph_gormanii_W1990 CTTGGAAATC-CTT-GAATCTAAAATTCAAA------GAAAGATTATATTGGATGGATTTTTTTTATAGTTTATAGAAAAC-----------------------AAAAAGTGCAAAAAAATTATTTTTTTTTTTT-AGACCCGTCGTCAAGAGTATAATATACTATCTCCCAACTCCTTCAGAGAGACAATCGGGAAAGGGTACGAATTAGTTTAGATCAAATAGG-----AAATAAAAGTATGTAATAGATAGCAA------------------TTTTTTTT--ACTTTGAAGGGCAAGAAAAAGGAATGGGTCTCTTTTTTTATTACTAG----------ATAGAATAGATGTTCCATTCCATTAGTAACATTCCCTTAATAGTGTCATTGTATATTTTACTTGTATTTAGTCTTTCCCGATTAGAAATCAT------ATAGGAATTTTTGAA----ATTTATTTGACTGGTTCATCAATAGTGTTCGGCCAGAATCCCTTTTTGACTCTGGACCA Euceph_ledophyllus_SX10272 CTTGGAAATC-CTT-GAATCTAAAATTCAAA------GAAAGATTATATTGGATGGATTTTTTTTATAGTTTATAGAAAAC-----------------------AAAAAGTGCAAAAAAATTATTTTTTTTTTTT-AGACCCGTCGTCAAGAGTATAATATACTATCTCCCAACTCCTTCAGAGAGACAATCGGGAAAGGGTACGAATTAGTTTAGATCAAATAGG-----AAATAAAAGTATGTAATAGATAGCAA------------------TTTTTTTT--ACTTTGAAGGGCAAGAAAAAGGAATGGGTCTCTTTTTTTATTACTAG----------ATAGAATAGATGTTCCATTCCATTAGTAACATTCCCTTAATAGTGTCATTGTATATTTTACTTGTATTTAGTCTTTCCCGATTAGAAATCAT------ATAGGAATTTTTGAA----ATTTATTTGACTGGTTCATCAATAGTGTTCGGCCAGAATCCCTTTTTGACTCTGGACCA Euceph_ledophyllus_S809 CTTGGAAATC-CTT-GAATCTAAAATTCAAA------GAAAGATTATATTGGATGGATTTTTTTTATAGTTTATAGAAAAC-----------------------AAAAAGTGCAAAAAAATTATTTTTTTTTTTT-AGACCCGTCGTCAAGAGTATAATATACTATCTCCCAACTCCTTCAGAGAGACAATCGGGAAAGGGTACGAATTAGTTTAGATCAAATAGG-----AAATAAAAGTATGTAATAGATAGCAA------------------TTTTTTTT--ACTTTGAAGGGCAAGAAAAAGGAATGGGTCTCTTTTTTTATTACTAG----------ATAGAATAGATGTTCCATTCCATTAGTAACATTCCCTTAATAGTGTCATTGTATATTTTACTTGTATTTAGTCTTTCCCGATTAGAAATCAT------ATAGGAATTTTTGAA----ATTTATTTGACTGGTTCATCAATAGTGTTCGGCCAGAATCCCTTTTTGACTCTGGACCA Euceph_ledophyllus_T9093 CTTGGAAATC-CTT-GAATCTAAAATTCAAA------GAAAGATTATATTGGATGGATTTTTTTTATAGTTTATAGAAAAC-----------------------AAAAAGTGCAAAAAAATTATTTTTTTTTTTT-AGACCCGTCGTCAAGAGTATAATATACTATCTCCCAACTCCTTCAGAGAGACAATCGGGAAAGGGTACGAATTAGTTTAGATCAAATAGG-----AAATAAAAGTATGTAATAGATAGCAA------------------TTTTTTTT--ACTTTGAAGGGCAAGAAAAAGGAATGGGTCTCTTTTTTTATTACTAG----------ATAGAATAGATGTTCCATTCCATTAGTAACATTCCCTTAATAGTGTCATTGTATATTTTACTTGTATTTAGTCTTTCCCGATTAGAAATCAT------ATAGGAATTTTTGAA----ATTTATTTGACTGGTTCATCAATAGTGTTCGGCCAGAATCCCTTTTTGACTCTGGACCA Euceph_paucicap_W1970 CTTGGAAATC-CTT-GAATCTAAAATTCAAA------GAAAGATTATATTGGATGGATTTTTTTTATAGTTTATAGAAAAC-----------------------AAAAAGTGCAAAAAAATTATTTTTTTTTTTT-AGACCCGTCGTCAAGAGTATAATATACTATCTCCCAACTCCTTCAGAGAGACAATCGGGAAAGGGTACGAATTAGTTTAGATCAAATAGG-----AAATAAAAGTATGTAATAGATAGCAA------------------TTTTTTTT--ACTTTGAAGGGCAAGAAAAAGGAATGGGTCTCTTTTTTTATTACTAG----------ATAGAATAGATGTTCCATTCCATTAGTAACATTCCCTTAATAGTGTCATTGTATATTTTACTTGTATTTAGTCTTTCCCGATTAGAAATCAT------ATAGGAATTTTTGAA----ATTTATTTGACTGGTTCATCAATAGTGTTCGGCCAGAATCCCTTTTTGACTCTGGACCA Euceph_paucicap_SX10288 CTTGGAAATC-CTT-GAATCTAAAATTCAAA------GAAAGATTATATTGGATGGATTTTTTTTATAGTTTATAGAAAAC-----------------------AAAAAGTGCAAAAAAATTATTTTTTTTTTTT-AGACCCGTCGTCAAGAGTATAATATACTATCTCCCAACTCCTTCAGAGAGACAATCGGGAAAGGGTACGAATTAGTTTAGATCAAATAGG-----AAATAAAAGTATGTAATAGATAGCAA------------------TTTTTTTT--ACTTTGAAGGGCAAGAAAAAGGAATGGGTCTCTTTTTTTATTACTAG----------ATAGAATAGATGTTCCATTCCATTAGTAACATTCCCTTAATAGTGTCATTGTATATTTTACTTGTATTTAGTCTTTCCCGATTAGAAATCAT------ATAGGAATTTTTGAA----ATTTATTTGACTGGTTCATCAATAGTGTTCGGCCAGAATCCCTTTTTGACTCTGGACCA Euceph_tomentellus_R292 CTTGGAAATC-CTT-GAATCTAAAATTCAAA------GAAAGATTATATTGGATGGATTTTTTTTATAGTTTATAGAAAAC-----------------------AAAAAGTGCAAAAAAATTATTTTTTTTTTTT-AGACCCGTCGTCAAGAGTATAATATACTATCTCCCAACTCCTTCAGAGAGACAATCGGGAAAGGGTACGAATTAGTTTAGATCAAATAGG-----AAATAAAAGTATGTAATAGATAGCAA------------------TTTTTTTT--ACTTTGAAGGGCAAGAAAAAGGAATGGGTCTCTTTTTTTATTACTAG----------ATAGAATAGATGTTCCATTCCATTAGTAACATTCCCTTAATAGTGTAATTGTATATTTTACTTGTATTTAGTCTTTCCCGATTAGAAATCAT------ATAGGAATTTTTGAA----ATTTATTTGACTGGTTCATCAATAGTGTTCGGCCAGAATCCCTTTTTGACTCTGGACCA Euceph_tomentellus_SH8495 CTTGGAAATC-CTT-GAATCTAAAATTCAAA------GAAAGATTATATTGGATGGATTTTTTTTATAGTTTATAGAAAAC-----------------------AAAAAGTGCAAAAAAATTATTTTTTTTTTTT-AGACCCGTCGTCAAGAGTATAATATACTATCTCCCAACTCCTTCAGAGAGACAATCGGGAAAGGGTACGAATTAGTTTAGATCAAATAGG-----AAATAAAAGTATGTAATAGATAGCAA------------------TTTTTTTT--ACTTTGAAGGGCAAGAAAAAGGAATGGGTCTCTTTTTTTATTACTAG----------ATAGAATAGATGTTCCATTCCATTAGTAACATTCCCTTAATAGTGTCATTGTATATTTTACTTGTATTTAGTCTTTCCCGATTAGAAATCAT------ATAGGAATTTTTGAA----ATTTATTTGACTGGTTCATCAATAGTGTTCGGCCAGAATCCCTTTTTGACTCTGGACCA Euceph_vialis_K16291 CTTGGAAATC-CTT-GAATCTAAAATTCAAA------GAAAGATTATATTGGATGGATTTTTTTTATAGTTTATAGAAAAC-----------------------AAAAAGTGCAAAAAAATTATTTTTTTTTTTT-AGACCCGTCGTCAAGAGTATAATATACTATCTCCCAACTCCTTCAGAGAGACAATCGGGAAAGGGTACGAATTAGTTTAGATCAAATAGG-----AAATAAAAGTATGTAATAGATAGCAA------------------TTTTTTTT--ACTTTGAAGGGCAAGAAAAAGGAATGGGTCTCTTTTTTTATTACTAG----------ATAGAATAGATGTTCCATTCCATTAGTAACATTCCCTTAATAGTGTCATTGTATATTTTACTTGTATTTAGTCTTTCCCGATTAGAAATCAT------ATAGGAATTTTTGAA----ATTTATTTGACTGGTTCATCAATAGTGTTCGGCCAGAATCCCTTTTTGACTCTGGACCA Euceph_vialis_K16431 CTTGGAAATC-CTT-GAATCTAAAATTCAAA------GAAAGATTATATTGGATGGATTTTTTTTATAGTTTATAGAAAAC-----------------------AAAAAGTGCAAAAAAATTATTTTTTTTTTT--AGACCCGTCGTCAAGAGTATAATATACTATCTCCCAACTCCTTCAGAGAGACAATCGGGAAAGGGTACGAATTAGTTTAGATCAAATAGG-----AAATAAAAGTATGTAATAGATAGCAA------------------TTTTTTTT--ACTTTGAAGGGCAAGAAAAAGGAATGGGTCTCTTTTTTTATTACTAG----------ATAGAATAGATGTTCCATTCCATTAGTAACATTCCCTTAATAGTGTCATTGTATATTTTACTTGTATTTAGTCTTTCCCGATTAGAAATCAT------ATAGGAATTTTTGAA----ATTTATTTGACTGGTTCATCAATAGTGTTCGGCCAGAATCCCTTTTTGACTCTGGACCA [trnCycf6 INDELS, 30 chars] Archibaccharis_asperifolia_KX063859.1 000110011111110100000100110011 Baccharis_pilularis_H4578 000010011010000100000100110011 Baccharis_salicifolia_AA1983 000010011111000100010100110011 Diplostephium_cinereum_KX063889.1 000010011111110101000100110011 Diplostephium_ericoides_KX063892.1 000010011111100100000100110011 Hinterhubera_ericoides_KX063910.1 110010000011100100000000100010 Laennecia_sophiifolia_KX063899.1 000000011110000100010100110011 Lagenophora_cuchumatanica_KX063879.1 000010010000000100010100110011 Oclemena_nemoralis_LB1 000010011110000100010110100011 Arida_carnosa_GU480694.1 000111111100000100011111100011 Eurybia_conspicua_GU480665.1 000010011111000100000110100111 Eurybia_macrophylla_GU480669.1 000010011110000100000110100111 Eurybia_radula_GU480659.1 000010011111000100000110100111 Herrickia_glauca_GU480679.1 000110111110000000000110100011 Herrickia_kingii_barnebyana_GU480675.1 000110011110000100000110100011 Machaeranthera_tanacetifolia_GU480688.1 001110111100000100011110100011 Oreostemma_alpigenum_alpigenum_GU480681.1 000110011111100100000110000011 Oreostemma_peirsonii_GU480684.1 000110011111000100100110000011 Doel_infirma_S10716 000110011110000100000110100011 Doel_sericocarpoides_S10531 000110011110000100000110100011 Doel_umbellata_G21464 000110011110000100000110100011 Doel_umbellata_S11044 000110011110000100000110100011 Doel_umbellata_SS11185 000110011110000100000110100011 Euceph_breweri_SH8736 000110011111110110000100111001 Euceph_breweri_E7865 000110011111111110000100111001 Euceph_elegans_B10488 000110011110000100000110100011 Euceph_elegans_H19500 000110011110000100000110100011 Euceph_elegans_GD1844 000110011110000100000110100011 Euceph_elegans_A1334 000110011110000100000110100011 Euceph_engelmannii_H3731 000110011111110110000100111001 Euceph_glabratus_K16314 000110011111100110000100111001 Euceph_glaucescens_K81115 000110011111110110000100111001 Euceph_glaucescens_SX10273 000110011111110110000100111001 Euceph_gormanii_SX10265 000110011111110110000100111001 Euceph_gormanii_W1990 000110011111110110000100111001 Euceph_ledophyllus_SX10272 000110011111110110000100111001 Euceph_ledophyllus_S809 000110011111110110000100111001 Euceph_ledophyllus_T9093 000110011111110110000100111001 Euceph_paucicap_W1970 000110011111110110000100111001 Euceph_paucicap_SX10288 000110011111110110000100111001 Euceph_tomentellus_R292 000110011111110110000100111001 Euceph_tomentellus_SH8495 000110011111110110000100111001 Euceph_vialis_K16291 000110011111110110000100111001 Euceph_vialis_K16431 000110011111100110000100111001 ; end; [! Bayesian analysis of Doell + Euceph ycf6trnC sequences, final with new 2018 outgroups (18 outgroup, 26 ingroup); indels coded; rates=invgamma for part(1)] begin mrbayes; Charset sequence = 1-518; Charset indels = 519-548; Partition Datanames = 2: sequence, indels; Set partition=Datanames; Lset applyto=(1) nst=6 rates=invgamma; Lset applyto=(2) coding=variable rates=gamma; Unlink shape=(all) pinvar=(all) statefreq=(all) revmat=(all); Prset ratepr=variable; End;