Supplementary data repository for: EXPANDING TRANSCRIPTOMIC REPRESENTATION OF NOCTILUCALES AND AMPHIDINIUM LINEAGES USING SINGLE CELL TRANSCRIPTOMICS Elizabeth C. Cooney, Brian S. Leander, Patrick J. Keeling Genome Biology and Evolution 2022 Dryad-stored supplementary data consists of: Five mp4 format videos of cells from each lineage described in publication: Abediniales.mp4 Amphidinium.mp4 Fabadinium.mp4 Kofoidinium.mp4 Spatulodinium.mp4 A zip folder containing all the peptide single cell transcriptome assemblies from the publication: peptide_transcriptome_assemblies.zip A zip folder containing .contree files of plastid-derived gene phylogenies that can be opened in treeviewer programs like FigTree: plastid_gene_treefiles.zip A Fasta file of the concatenated alignment used to make the multi-protein phylogeny: concatenated_multiprotein_alignment.fasta A PDF of the fully expanded SSU phylogeny: full_ssu_tree.pdf