Alignment files (phylip format) and resulting phylogenetic trees (nexus format). A. Analysis of Fragaria moschata subgenomes: Fragaria_moschata.subgenome.alignments.tar.gz Fragaria_moschata.subgenome.trees B. Analysis of Fragaria x ananassa 'Camarosa' subgenomes. The nexus trees with branch length and bootstrap values are in column 4 of the tree-results.txt files. See the first line header for other fields. octoploid.subgenome.phylogeny.2191-windows.alignments.tar.gz octoploid.subgenome.phylogeny.2191-windows.tree-results.txt octoploid.subgenome.phylogeny.7-chromosomes.alignments.tar.gz octoploid.subgenome.phylogeny.7-chromosomes.tree-results.txt Key to codes used in octoploid subgenome alignment files: s0 vesca s1 Camarosa_iinumae s2 Camarosa_nipponica s3 Camarosa_vesca s4 Camarosa_viridis s5 bucharica s6 potentilla s7 bracteata s8 iinumae s9 nipponica s10 mandshurica s11 nilgerrensis s12 viridis