R version 3.6.3 (2020-02-29) Platform: x86_64-pc-linux-gnu (64-bit) Running under: Ubuntu 18.04.5 LTS Matrix products: default BLAS: /usr/lib/x86_64-linux-gnu/openblas/libblas.so.3 LAPACK: /usr/lib/x86_64-linux-gnu/libopenblasp-r0.2.20.so locale: [1] LC_CTYPE=en_US.UTF-8 LC_NUMERIC=C LC_TIME=en_US.UTF-8 LC_COLLATE=en_US.UTF-8 LC_MONETARY=en_US.UTF-8 [6] LC_MESSAGES=en_US.UTF-8 LC_PAPER=en_US.UTF-8 LC_NAME=C LC_ADDRESS=C LC_TELEPHONE=C [11] LC_MEASUREMENT=en_US.UTF-8 LC_IDENTIFICATION=C attached base packages: [1] stats graphics grDevices utils datasets methods base other attached packages: [1] gplots_3.0.4 pheatmap_1.0.12 EnhancedVolcano_1.4.0 ggrepel_0.8.2 ggplot2_3.3.2 dplyr_0.8.5 [7] Seurat_3.1.5 loaded via a namespace (and not attached): [1] httr_1.4.2 tidyr_1.0.2 jsonlite_1.7.0 viridisLite_0.3.0 splines_3.6.3 gtools_3.8.2 leiden_0.3.3 [8] assertthat_0.2.1 globals_0.12.5 pillar_1.4.6 lattice_0.20-41 glue_1.4.0 reticulate_1.15 digest_0.6.25 [15] RColorBrewer_1.1-2 colorspace_1.4-1 cowplot_1.0.0 htmltools_0.5.0 Matrix_1.2-18 plyr_1.8.6 pkgconfig_2.0.3 [22] tsne_0.1-3 listenv_0.8.0 purrr_0.3.4 patchwork_1.0.1 scales_1.1.1 gdata_2.18.0 RANN_2.6.1 [29] Rtsne_0.15 tibble_3.0.1 ellipsis_0.3.1 withr_2.2.0 ROCR_1.0-11 pbapply_1.4-3 lazyeval_0.2.2 [36] survival_3.2-7 magrittr_1.5 crayon_1.3.4 future_1.18.0 nlme_3.1-150 MASS_7.3-53 ica_1.0-2 [43] tools_3.6.3 fitdistrplus_1.1-1 data.table_1.13.0 lifecycle_0.2.0 stringr_1.4.0 plotly_4.9.2.1 munsell_0.5.0 [50] cluster_2.1.0 irlba_2.3.3 compiler_3.6.3 rsvd_1.0.3 caTools_1.18.0 rlang_0.4.6 grid_3.6.3 [57] ggridges_0.5.2 rstudioapi_0.11 RcppAnnoy_0.0.16 rappdirs_0.3.1 htmlwidgets_1.5.1 igraph_1.2.5 bitops_1.0-6 [64] gtable_0.3.0 codetools_0.2-17 reshape2_1.4.4 R6_2.4.1 gridExtra_2.3 zoo_1.8-8 future.apply_1.6.0 [71] uwot_0.1.8 KernSmooth_2.23-18 ape_5.4 stringi_1.4.6 parallel_3.6.3 Rcpp_1.0.4.6 vctrs_0.2.4 [78] sctransform_0.2.1 png_0.1-7 tidyselect_1.1.0 lmtest_0.9-37