PLINK v1.90p 64-bit (2 Dec 2018) Options in effect: --bfile lwf.pop --chr-set 40 no-xy --het --out lwf.pop --within fst.within.txt Hostname: coreV3-23-033.cm.cluster Working directory: /scratch-lustre/wlarson/yue/LWF/popgen_nopcrdup/plink Start time: Fri Jan 29 18:37:09 2021 Random number seed: 1611963429 128699 MB RAM detected; reserving 64349 MB for main workspace. 197588 variants loaded from .bim file. 829 samples (0 males, 0 females, 829 ambiguous) loaded from .fam. Ambiguous sex IDs written to lwf.pop.nosex . --within: 17 clusters loaded, covering a total of 829 samples. Using 1 thread (no multithreaded calculations invoked). Before main variant filters, 829 founders and 0 nonfounders present. Calculating allele frequencies... done. Total genotyping rate is 0.887086. 197588 variants and 829 samples pass filters and QC. Note: No phenotypes present. --het: 196005 variants scanned, report written to lwf.pop.het . End time: Fri Jan 29 18:37:10 2021