###README### fasta file for the Rapture panel with 10K baited loci: 190826-90-Whitefish100K.fas. vcf file after filtering (829 individuals and 197,588 SNPs): lwf.nomixed.snps.N829.sorted.chr.vcf popmap file for 829 individuals: lwf.N829.popmap.edited Intermediate PLINK files (bed/bim/fam) used in pcadapt analyses (see https://github.com/melodysyue/lwf_LM_popgen/). Note: these PLINK files are archived on DRYAD due to file size limits on Github. - PLINK files for all popolations and populations in each geographic regions (northwestern, eastern and northeastern) with all SNPs lwf.pop* lwf.west.pop* lwf.east.pop* lwf.ne.pop* - PLINK files for all populations and populations in each geographic regions (northwestern, eastern and northeastern) after LD thinning lwf.pcadapt.allpops.thinned* lwf.pcadapt.west.thinned* lwf.pcadapt.east.thinned* lwf.pcadapt.ne.thinned*