This readme file was generated on 2022-09-01 by Kazumichi Fujiwara GENERAL INFORMATION Dataset of "Insights into Mus musculus population structure across Eurasia revealed by whole-genome analysis" This dataset is config and result file for the research paper (Kazumichi Fujiwara, Yosuke Kawai, Toyoyuki Takada, Toshihiko Shiroishi, Naruya Saitou, Hitoshi Suzuki, Naoki Osada, Insights into Mus musculus Population Structure across Eurasia Revealed by Whole-Genome Analysis, Genome Biology and Evolution, Volume 14, Issue 5, May 2022, evac068, https://doi.org/10.1093/gbe/evac068). The short-read sequence data generated in this paper have been submitted to the DDBJ BioProject database (https://www.ddbj.nig.ac.jp/bioproject/) under accession number PRJDB11027. This dataset also contains result from other publicly accessible dataset (Harr, B., Karakoc, E., Neme, R. et al. Genomic resources for wild populations of the house mouse, Mus musculus and its close relative Mus spretus. Sci Data 3, 160075 (2016). https://doi.org/10.1038/sdata.2016.75). DATA & FILE OVERVIEW Further data specific information can be fouond in a separate README file included in the zip file for each piece of data. Mosdepth.zip -> sample combined depth (genome coverage) plot for all newly sequenced samples used in the paper. KING.zip -> results from the KING software with kinship coefficients calculated for all paired samples. Eigensoft_smartpca.zip -> results from EIGENSOFT that calculates principal component analysis used in the paper Fig.1. Admixture.zip -> ADMIXTURE K=3,4 results used in the paper Fig.2. PSMC.zip -> the config and result of Pairwise Sequential Markovian Coalescent (PSMC) model us ed in the paper Fig.S10. MSMC.zip -> input file of Multiple Sequentially Markovian Coalescent (MSMC) model used in the paper Fig.3. Plink.zip -> The PLINK file for autosome and X chromosome we used for most of our analysis.