Included are files for generating the phylogeny in Thomas et al., Multiple origins of mountain diversity in New Zealand's largest plant radiation. Beauti_infile.xml contains the settings for the StarBEAST2 run. sortadate50_alignments.zip contains trimmed alignments for 50 genes used to construct the tree. sortadate50_trees.zip contains 2000 trees randomly selected from the posterior distribution of the StarBEAST2 run and the Maximum clade credibility tree generated by TreeAnnotater, rank50_strictEstimate.species.ann.tre.