#NEXUS [File generated by DnaSP Ver. 4.50.3; Mrz 15, 2009] [Haplotype Data from Data File: Lmusc_1pernest_79Seqs.fas] [Number of sequences: 79 Number of sequences used: 79] [Number of Sites in the complete Data File: 1276] [Selected Region: 1-1276] [Sites with alignment gaps: not considered] [Invariable sites: removed] BEGIN TAXA; DIMENSIONS NTAX=20; TAXLABELS Hap_1 Hap_2 Hap_3 Hap_4 Hap_5 Hap_6 Hap_7 Hap_8 Hap_9 Hap_10 Hap_11 Hap_12 Hap_13 Hap_14 Hap_15 Hap_16 Hap_17 Hap_18 Hap_19 Hap_20; END; [Hap# Freq. Sequences] [Hap_1: 2 1 78] [Hap_2: 23 2 7 31-32 34-38 45 51-52 54-58 62 68-70 72 74] [Hap_3: 14 3 10 13-19 46-50] [Hap_4: 8 4-5 40-44 53] [Hap_5: 2 6 9] [Hap_6: 1 8] [Hap_7: 1 11] [Hap_8: 1 12] [Hap_9: 3 20-22] [Hap_10: 1 23] [Hap_11: 1 24] [Hap_12: 1 25] [Hap_13: 7 26-29 59-60 64] [Hap_14: 2 30 33] [Hap_15: 1 39] [Hap_16: 1 61] [Hap_17: 1 63] [Hap_18: 3 65-67] [Hap_19: 1 71] [Hap_20: 5 73 75-77 79] BEGIN CHARACTERS; DIMENSIONS NCHAR=54; FORMAT DATATYPE=DNA MISSING=? GAP=- MATCHCHAR=.; CHARLABELS [1] nt_6 [2] nt_33 [3] nt_66 [4] nt_81 [5] nt_126 [6] nt_165 [7] nt_191 [8] nt_203 [9] nt_230 [10] nt_239 [11] nt_241 [12] nt_278 [13] nt_286 [14] nt_295 [15] nt_326 [16] nt_331 [17] nt_373 [18] nt_439 [19] nt_442 [20] nt_472 [21] nt_487 [22] nt_577 [23] nt_580 [24] nt_588 [25] nt_605 [26] nt_641 [27] nt_645 [28] nt_653 [29] nt_656 [30] nt_680 [31] nt_683 [32] nt_695 [33] nt_745 [34] nt_752 [35] nt_796 [36] nt_799 [37] nt_802 [38] nt_835 [39] nt_868 [40] nt_889 [41] nt_976 [42] nt_1007 [43] nt_1040 [44] nt_1046 [45] nt_1061 [46] nt_1086 [47] nt_1124 [48] nt_1158 [49] nt_1172 [50] nt_1173 [51] nt_1206 [52] nt_1215 [53] nt_1221 [54] nt_1269 ; MATRIX [ 10 20 30 40 50 ] [ * * * * * ] Hap_1 TGTCATGGCCAATTTGCTTTGTTAGCCATTAATATGCCGTTTCCCCTATGCTTT Hap_2 ....................A................................. Hap_3 .A.T...A...G......A.A.A...T..C...CCA.T..C....T.....C.. Hap_4 .A..................A................................. Hap_5 .ACT.C.AT...CC..TCACA.A.ATTGCC.C...A.T..C.T.TT..CA..CC Hap_6 .A.......T..........A................................. Hap_7 .A.T...A...G......A.A.A...T..C...CCATT..C....T.....C.. Hap_8 .A.T...A...G......A.AAA...T..C...CCATT..C....T.....C.. Hap_9 .A.T...A.......A..A.A.A...T..C...CCA.T..C....T.....C.. Hap_10 .A.T...A.......A..A.A.AG..T..C...CCA.T..C....TA....C.. Hap_11 .A.T..AA..........A.A.A...T..C...CC..T..C....T.....C.. Hap_12 .A.T..AA......A...A.A.A...T..C...CCA.T..C....T.....C.. Hap_13 .A.T..AA..........A.A.A...T..C...CCA.T..C....T.....C.. Hap_14 ....................A............C.................... Hap_15 ....................A..........................G...... Hap_16 .A.T..AA..........A.A.A...T..CT.C..A.TACCCT.TT..C.TC.. Hap_17 CA.T..AA..G.......A.A.A...T..C...CCA.T..C....T.....C.. Hap_18 .A.TT..A...G......A.A.A...T..C...CCA.T..C....T.....C.. Hap_19 ...............A....A................................. Hap_20 ....................A......................T.......... ; END; BEGIN SETS; TaxSet Germany = 1-2 4 14-15; TaxSet Czech_Republic = 2-6; TaxSet Russia = 3 7-8; TaxSet Italy = 9-13 18; TaxSet Poland = 2 4; TaxSet Austria = 2 13 16-17; TaxSet Sweden = 1-2 19-20; END; BEGIN DnaSP; Genome= Diploid; ChromosomalLocation= Autosome; VariationType= Haplotypes; DnaSPversion= Ver. 4.50.3; END;