Read Me: Additional Files (AF) 1-5 represent complete supplemental data from all EMMAX GWAA's, as depicted in Fig. 1 and Fig. 2. P-P plots (P-P) are also provided; where the -log10(Observed P-value) appears on the y-axis and the -log10(Expected P-value) appears on the x-axis. All file names are fully descriptive of the analyses performed including the dependent variable (Binary versus CWDScores), and whether any covariates were used (Sex, Age, GenRegion, CWDTissueScores, No Covariates). All EMMAX GWAA's used putative non-autosomal SNPs on X and MT, and full dosage compensation. Additional Files (AF) 6-29 represent summary data from all GBLUP genomic predictions (50 iterations). All file names are fully descriptive of the analyses performed including the dependent variable (Binary versus CWDScores), whether any covariates were used (Sex, Age, GenRegion, No Covariates), whether full dosage compensation was modeled, and if putative non-autsomal SNPs were included. Additional File (AF) 30 is the Affy choose SNPs py script and documentation to run it. This script will choose SNPs for inclusion on a custom Affy array. Additional File (AF) 31 represents the samples with IBD PI estimates > 0.70, and their estimated IBS distances as well as other supporting data. Process controls are clearly labeled. Additional File (AF) 32 represents the SNP conversion types summary data (For All SNPs minus internal Affy controls). 807WTD.dsf represents the genotype and phenotype data in SVS format. 807WTD.txt represents the genotype and phenotype data in delimited text format. 807WTD_MarkerMap.csv represents the custom marker map for the custom array. VarianceComponents807WTD.txt represents the summary data (logged) from the variance component analyses