#NEXUS begin taxa; dimensions ntax=21; taxlabels MN996532__Bat_coronavirus_RaTG13_[&Organism="Bat coronavirus RaTG13",Description="Bat coronavirus RaTG13, complete genome","Genetic Code"="Standard",Taxonomy="Viruses; Riboviria; Nidovirales; Cornidovirineae; Coronaviridae; unclassified Coronaviridae"] MN908947__Wuhan_seafood_market_pneumonia_virus_isolate_Wuhan_Hu_1_SARS_CoV_2_ MT084071__Pangolin_coronavirus_isolate_MP789_[&"# Nucleotide Sequences With Mates"=0,Organism="Pangolin coronavirus",Description="Pangolin coronavirus isolate MP789 genomic sequence","Genetic Code"="Standard",Modified=Mon Mar 16 16:48:31 ECT 2020,"Mean Coverage"=1.99039647870886,Taxonomy="Viruses; Riboviria; Nidovirales; Cornidovirineae; Coronaviridae; Orthocoronavirinae; Betacoronavirus; unclassified Betacoronavirus","Alignment method"="MAFFT Alignment",Topology="linear",Created=Mon Mar 09 08:59:37 ECT 2020,URN="urn:local:.:caf-bnocubz","Free end gaps"=true,"Ref Seq Name"="","Molecule Type"="AA"] 'MK211378__Coronavirus_BtRs_BetaCoV/YN2018D_' 'MK211375__Coronavirus_BtRs_BetaCoV/YN2018A_' KY417148__Bat_SARS_like_coronavirus_isolate_Rs4247_ KY417142__Bat_SARS_like_coronavirus_isolate_As6526_ DQ071615__Bat_SARS_coronavirus_Rp3_ FJ211859__Recombinant_coronavirus_clone_Bat_SARS_CoV_ DQ084199__bat_SARS_coronavirus_HKU3_2_ DQ412043__Bat_SARS_coronavirus_Rm1_ FJ211860__Recombinant_coronavirus_clone_Bat_SRBD_spike_glycoprotein_gene_ 'KJ473814__BtRs_BetaCoV/HuB2013_' KY417146__Bat_SARS_like_coronavirus_isolate_Rs4231_ KT444582__SARS_like_coronavirus_WIV16_ AY390556__SARS_coronavirus_GZ02_[&Organism="SARS coronavirus GZ02",Description="SARS coronavirus GZ02, complete genome","Genetic Code"="Standard",Taxonomy="Viruses; Riboviria; Nidovirales; Cornidovirineae; Coronaviridae; Orthocoronavirinae; Betacoronavirus; Sarbecovirus"] KY417144__Bat_SARS_like_coronavirus_isolate_Rs4084_ KC881006__Bat_SARS_like_coronavirus_Rs3367_ KF569996__Rhinolophus_affinis_coronavirus_isolate_LYRa11_ MG772934__Bat_SARS_like_coronavirus_isolate_bat_SL_CoVZXC21_ MG772933__Bat_SARS_like_coronavirus_isolate_bat_SL_CoVZC45_ ; end; begin characters; dimensions nchar=1284; format datatype=protein missing=? gap=-; matrix MN996532__Bat_coronavirus_RaTG13_ --------MFVFLVLLPLVSSQCVNLTTRTQLPPAYTNSSTRGVYYPDKVFRSSVLHLTQDLFLPFFSNVTWFHAIHVSGTNGIKRFDNPVLPFNDGVYFASTEKSNIIRGWIFGTTLDSKTQSLLIVNNATNVVIKVCEFQFCNDPFLGVYY--HKNNKSWMESEFRVYSSANNCTFEYVSQPFLMDLEGKQG-NFKNLREFVFKNIDGYFKIYSKHTPINLVRDLPPGFSALEPLVDLPIGINITRFQTLLALHRSYLTPGDSSSGWTAGAAAYYVGYLQPRTFLLKYNENGTITDAVDCALDPLSETKCTLKSFTVEKGIYQTSNFRVQPTDSIVRFPNITNLCPFGEVFNATTFASVYAWNRKRISNCVADYSVLYNSTSFSTFKCYGVSPTKLNDLCFTNVYADSFVITGDEVRQIAPGQTGKIADYNYKLPDDFTGCVIAWNSKHIDAKEGGNFNYLYRLFRKANLKPFERDISTEIYQAGSKPCNGQTGLNCYYPLYRYGFYPTDGVGHQPYRVVVLSFELLNAPATVCGPKKSTNLVKNKCVNFNFNGLTGTGVLTESNKKFLPFQQFGRDIADTTDAVRDPQTLEILDITPCSFGGVSVITPGTNASNQVAVLYQDVNCTEVPVAIHADQLTPTWRVYSTGSNVFQTRAGCLIGAEHVNNSYECDIPIGAGICASYQTQTNS----RSVASQSIIAYTMSLGAENSVAYSNNSIAIPTNFTISVTTEILPVSMTKTSVDCTMYICGDSTECSNLLLQYGSFCTQLNRALTGIAVEQDKNTQEVFAQVKQIYKTPPIKDFGGFNFSQILPDPSKPSKRSFIEDLLFNKVTLADAGFIKQYGDCLGDIAARDLICAQKFNGLTVLPPLLTDEMIAQYTSALLAGTITSGWTFGAGAALQIPFAMQMAYRFNGIGVTQNVLYENQKLIANQFNSAIGKIQDSLSSTASALGKLQDVVNQNAQALNTLVKQLSSNFGAISSVLNDILSRLDKVEAEVQIDRLITGRLQSLQTYVTQQLIRAAEIRASANLAATKMSECVLGQSKRVDFCGKGYHLMSFPQSAPHGVVFLHVTYVPAQEKNFTTAPAICHDGKAHFPREGVFVSNGTHWFVTQRNFYEPQIITTDNTFVSGSCDVVIGIVNNTVYDPLQPELDSFKEELDKYFKNHTSPDVDLGDISGINASVVNIQKEIDRLNEVAKNLNESLIDLQELGKYEQYIKWPWYIWLGFIAGLIAIIMVTIMLCCMTSCCSCLKGCCSCGSCCKFDEDDSEPVLKGVKLHYT MN908947__Wuhan_seafood_market_pneumonia_virus_isolate_Wuhan_Hu_1_SARS_CoV_2_ --------MFVFLVLLPLVSSQCVNLTTRTQLPPAYTNSFTRGVYYPDKVFRSSVLHSTQDLFLPFFSNVTWFHAIHVSGTNGTKRFDNPVLPFNDGVYFASTEKSNIIRGWIFGTTLDSKTQSLLIVNNATNVVIKVCEFQFCNDPFLGVYY--HKNNKSWMESEFRVYSSANNCTFEYVSQPFLMDLEGKQG-NFKNLREFVFKNIDGYFKIYSKHTPINLVRDLPQGFSALEPLVDLPIGINITRFQTLLALHRSYLTPGDSSSGWTAGAAAYYVGYLQPRTFLLKYNENGTITDAVDCALDPLSETKCTLKSFTVEKGIYQTSNFRVQPTESIVRFPNITNLCPFGEVFNATRFASVYAWNRKRISNCVADYSVLYNSASFSTFKCYGVSPTKLNDLCFTNVYADSFVIRGDEVRQIAPGQTGKIADYNYKLPDDFTGCVIAWNSNNLDSKVGGNYNYLYRLFRKSNLKPFERDISTEIYQAGSTPCNGVEGFNCYFPLQSYGFQPTNGVGYQPYRVVVLSFELLHAPATVCGPKKSTNLVKNKCVNFNFNGLTGTGVLTESNKKFLPFQQFGRDIADTTDAVRDPQTLEILDITPCSFGGVSVITPGTNTSNQVAVLYQDVNCTEVPVAIHADQLTPTWRVYSTGSNVFQTRAGCLIGAEHVNNSYECDIPIGAGICASYQTQTNSPRRARSVASQSIIAYTMSLGAENSVAYSNNSIAIPTNFTISVTTEILPVSMTKTSVDCTMYICGDSTECSNLLLQYGSFCTQLNRALTGIAVEQDKNTQEVFAQVKQIYKTPPIKDFGGFNFSQILPDPSKPSKRSFIEDLLFNKVTLADAGFIKQYGDCLGDIAARDLICAQKFNGLTVLPPLLTDEMIAQYTSALLAGTITSGWTFGAGAALQIPFAMQMAYRFNGIGVTQNVLYENQKLIANQFNSAIGKIQDSLSSTASALGKLQDVVNQNAQALNTLVKQLSSNFGAISSVLNDILSRLDKVEAEVQIDRLITGRLQSLQTYVTQQLIRAAEIRASANLAATKMSECVLGQSKRVDFCGKGYHLMSFPQSAPHGVVFLHVTYVPAQEKNFTTAPAICHDGKAHFPREGVFVSNGTHWFVTQRNFYEPQIITTDNTFVSGNCDVVIGIVNNTVYDPLQPELDSFKEELDKYFKNHTSPDVDLGDISGINASVVNIQKEIDRLNEVAKNLNESLIDLQELGKYEQYIKWPWYIWLGFIAGLIAIVMVTIMLCCMTSCCSCLKGCCSCGSCCKFDEDDSEPVLKGVKLHYT MT084071__Pangolin_coronavirus_isolate_MP789_ --------MFFFFLHFALVNSQCVNLTGRAAIQPSFTNSSQRGVYYPDTIFRSNTLVLSQGYFLPFYSNVSWYYALTK-TNSAEKRVDNPVLDFKDGIYFAATEKSNIVRGWIFGTTLDNTSQSLLIVNNATNVIIKVCNFQFCYDPYLSGYY---HNNKTWSTREFAVYSSYANCTFEYVSKSFMLDIAGKSG-LFDTLREFVFRNVDGYFKIYSKYTPVNVNSNLPIGFSALEPLVEIPAGINITKFRTLLTIHRGDPMP---XXXXXXXXXXXXXGYLAPRTFMLNYNENGTITDAVDCALDPLSEAKCTLKSLTVEKGIYQTSNFRVQPTESIVRFPNITNLCTFGEVFNATTFASVYAWNRKRISNCVADYSVLYNSTSFSTFKCYGVSPTKLNDLCFTNVYADSFVVRGDEVRQIAPGQTGRIADYNYKLPDDFTGCVIAWNSNNLDSKVGGNYNYLYRLFRKSNLKPFERDISTEIYQAGSTPCNGVEGFNCYFPLQSYGFHPTNGVGYQPYRVVVLSFELLXAPATVCGPKQSTNLVKNKCVNFNFNG-------------------------------------------------------------------------------XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXNTYECDIPIGAGICASYQTQTNS----RSVSSXAIIAYTMSLGAENSVAYANNSIAIPTNFTISVTTEILPVSMTKTSXDCTMYICGDSIECSNLLLQYGSFCTQLNRALTGIAVEQDKNTQEVFAQVKQIYKTPPIKDFGGFNFSQILPDPSKPSKRSFIEDLLFNKVTLADAGFIKQYGDCLGDIAARDLICAQKFNGLTVLPPLLTDEMIAQYTSALLAGTITSGWTFGAGAALQIPFAMQMAYRFNGIGVTQNVLYENQKLIANQFNSAIGKIQDSLSSTASALGKLQDVVNQNAQALNTLVKQLSSNFGAISSVLNDILSRLDKVEAEVQIDRLITGRLQSLQTYVTQQLIRAAEIRASANLAATKMSECVLGQSKRVDFCGKGYHLMSFPQSAPHGVVFLHVTYVPSQEKNFTTTPAICHEGKAHFPREGVFVSNGTHWFVTQRNFYEPQIITTDNTFVSGSCDVVIGIVNNTVYDPLQPXLDSFKEELDKYFKNHTSPDVDLXDK-------------------------------------------------------------------------------------XXXXXXXXXXXXXXXXXXX 'MK211378__Coronavirus_BtRs_BetaCoV/YN2018D_' --MK--VLIVLLCLGLVTAQDGCGHISTKPQPLLDKFSSSRRGVYYNDDIFRSDVLHLTQDYFLPFDTNLTRYLSFNM-DSATKVYFDNPTLPFGDGIYFAATEKSNVVRGWIFGSTMDNTTQSAIIVNNSTHIIIRVCYFNLCKEPMYAISN--EQHYKSW------VYQNAYNCTYDRVEQSFQLDTAPQTG-NFKDLREYVFKNKDGFLSVYNAYSPIDIPRGLPVGFSVLKPILKLPIGINITSFKVVMSMFS---RT---TSNFLPEVAAYFVGNLKYSTFMLNFNENGTITDAIDCAQNPLSELKCTIKNFNVSKGIYQTSNFRVSPTHEVIRFPNITNRCPFDKVFNASRFPNVYAWERTKISDCVADYTVLYNSTSFSTFKCYGVSPSKLIDLCFTSVYADTFLIRSSEVRQVAPGETGVIADYNYKLPDDFTGCVIAWNTAKQDQG-----QYYYRSSRKTKLKPFERDLTSDE--------------NGVRTLSTYDFYPNVPIEYQATRVVVLSFELLNAPATVCGPKLSTGLVKNQCVNFNFNGLRGTGVLTDSSKRFQSFQQFGRDTSDFTDSVRDPQTLEILDITPCSFGGVSVITPGTNASSEVAVLYQDVNCTDVPTAIRADQLTPAWRVYSTGINVFQTQAGCLIGAEHVNASYECDIPIGAGICASYHTASTL----RSVGQKSIVAYTMSLGAENSIAYANNSIAIPTNFSISVTTEVMPVSMSKTSVDCTMYICGDSQECSNLLLQYGSFCTQLNRALTGIAIEQDKNTQEVFAQVKQMYKTPAIKDFGGFNFSQILPDPSKPTKRSFIEDLLFNKVTLADAGFMKQYGECLGDINARDLICAQKFNGLTVLPPLLTDDMIAAYTAALVSGTATAGWTFGAGAALQIPFAMQMAYRFNGIGVTQNVLYENQKQIANQFNKAISQIQESLTTTSTALGKLQDVVNQNAQALNTLVKQLSSNFGAISSVLNDILSRLDKVEAEVQIDRLITGRLQSLQTYVTQQLIRAAEIRASANLAATKMSECVLGQSKRVDFCGRGYHLMSFPQAAPHGVVFLHVTYVPSQEKNFTTAPAICHEGKAYFPREGVFVSNGTSWFITQRNFYSPQIITTDNTFVAGSCDVVIGIINNTVYDPLQPELDSFKEELDKYFKNHTSPDVDLGDISGINASVVNIQKEIDRLNEVAKNLNESLIDLQELGKYEQYIKWPWYVWLGFIAGLIAIVMATILLCCMTSCCSCLKGACSCGSCCKFDEDDSEPVLKGVKLHYT 'MK211375__Coronavirus_BtRs_BetaCoV/YN2018A_' --MK--ILIFAFLVTLVEAQEGCGIISRKPQPKMAQVSSSRRGVYYNDDIFRSDVLHLTQDYFLPFDSNLTQYFSLNV-DSDRYTYFDNPILDFGDGVYFAATEKSNVIRGWIFGSTFDNTTQSAVIVNNSTHIIIRVCNFNLCKEPMYTVSR--GTQQSSW------VYQSAFNCTYDRVERSFQLDTAPKTG-NFKDLREYVFKNRDGFLSVYQTYTAVNLPRGLPIGFSVLRPILKLPFGINITSYRVVMAMFS---QT---TSNFLPESAAYYVGNLKYTTFMLRFNENGTITDAIDCAQNPLAELKCTIKNFNVSKGIYQTSNFRVSPTQEVVRFPNITNRCPFDKVFNASRFPNVYAWERTKISDCVADYTVLYNSTSFSTFKCYGVSPSKLIDLCFTSVYADTFLIRSSEVRQVAPGETGVIADYNYKLPDDFTGCVIAWNTAKQDTG-----HYYYRSHRKTKLKPFERDLSSDD----G---------NGVYTLSTYDFNPNVPVAYQATRVVVLSFELLNAPATVCGPKLSTQLVKNQCVNFNFNGLKGTGVLTDSSKRFQSFQQFGRDTSDFTDSVRDPQTLEILDITPCSFGGVSVITPGTNASSEVAVLYQDVNCTDVPTAIRADQLTPAWRVYSTGVNVFQTQAGCLIGAEHVNASYECDIPIGAGICASYHTASTL----RSVGQKSIVAYTMSLGAENSIAYANNSIAIPTNFSISVTTEVMPVSMAKTSVDCTMYICGDSQECSNLLLQYGSFCTQLNRALTGVALEQDKNTQEVFAQVKQMYKTPAIKDFGGFNFSQILPDPSKPTKRSFIEDLLFNKVTLADAGFMKQYGECLGDINARDLICAQKFNGLTVLPPLLTDDMIAAYTAALVSGTATAGWTFGAGAALQIPFAMQMAYRFNGIGVTQNVLYENQKQIANQFNKAISQIQESLTTTSTALGKLQDVVNQNAQALNTLVKQLSSNFGAISSVLNDILSRLDKVEAEVQIDRLITGRLQSLQTYVTQQLIRAAEIRASANLAATKMSECVLGQSKRVDFCGRGYHLMSFPQAAPHGVVFLHVTYVPSQEKNFTTAPAICHEGKAYFPREGVFVSNGTFWFITQRNFYSPQIITTDNTFVAGNCDVVIGIINNTVYDPLQPELDSFKEELDKYFKNHTSPDVDLGDISGINASVVNIQKEIDRLNEVAKNLNESLIDLQELGKYEQYIKWPWYVWLGFIAGLIAIVMATILLCCMTSCCSCLKGACSCGSCCKFDEDDSEPVLKGVKLHYT KY417148__Bat_SARS_like_coronavirus_isolate_Rs4247_ --MK--ILIFAFLVTLVKAQEGCGIISRKPQPKMAQVSSSRRGVYYNDDIFRSDVLHLTQDYFLPFDSNLTQYFSLNV-DSDRYTYFDNPILDFGDGVYFAATEKSNVIRGWIFGSTFDNTTQSAVIVNNSTHIIIRVCNFNLCKEPMYTVSR--GTQQSSW------VYQSAFNCTYDRVERSFQLDTAPKTG-NFKDLREYVFKNRDGFLSVYQTYTAVNLPRGLPTGFSVLRPILKLPFGINITSYRVVMAMFS---QT---TSNFLPESAAYYVGNLKYTTFMLSFNENGTITDAIDCAQNPLAELKCTIKNFNVSKGIYQTSNFRVSPTQEVIRFPNITNRCPFDKVFNASRFPNVYAWERTKISDCVADYTVLYNSTSFSTFKCYGVSPSKLIDLCFTSVYADTFLIRSSEVRQVAPGETGVIADYNYKLPDDFTGCVIAWNTAKQDTG-----HYYYRSHRKTKLKPFERDLSSDD----G---------NGVYTLSTYDFNPNVPVAYQATRVVVLSFELLNAPATVCGPKLSTQLVKNQCVNFNFNGLKGTGVLTDSSKRFQSFQQFGRDTSDFTDSVRDPQTLEILDITPCSFGGVSVITPGTNASSEVAVLYQDVNCTDVPTAIRADQLTPAWRVYSTGINVFQTQAGCLIGAEHVNASYECDIPIGAGICASYHTASTL----RSVGQKSIVAYTMSLGAENSIAYANNSIAIPTNFSISVTTEVMPVSMSKTSVDCTMYICGDSQECSNLLLQYGSFCTQLNRALTGIAIEQDKNTQEVFAQVKQMYKTPAIKDFGGFNFSQILPDPSKPTKRSFIEDLLFNKVTLADAGFMKQYGECLGDINARDLICAQKFNGLTVLPPLLTDDMIAAYTAALVSGTATAGWTFGAGAALQIPFAMQMAYRFNGIGVTQNVLYENQKQIANQFNKAISQIQESLTTTSTALGKLQDVVNQNAQALNTLVKQLSSNFGAISSVLNDILSRLDKVEAEVQIDRLITGRLQSLQTYVTQQLIRAAEIRASANLAATKMSECVLGQSKRVDFCGRGYHLMSFPQAAPHGVVFLHVTYVPSQEKNFTTAPAICHEGKAYFPREGVFVSNGTSWFITQRNFYSPQIITTDNTFVAGNCDVVIGIINNTVYDPLQPELDSFKEELDKYFKNHTSPDVDLGDISGINASVVNIQKEIDRLNEVAKNLNESLIDLQELGKYEQYIKWPWYVWLGFIAGLIAIVMATILLCCMTSCCSCLKGACSCGSCCKFDEDDSEPVLKGVKLHYT KY417142__Bat_SARS_like_coronavirus_isolate_As6526_ --MK--ILIFAFLVTLVKAQEGCGIISRKPQPKMAQVSSSRRGVYYNDDIFRSDVLHLTQDYFLPFDSNLTQYFSLNV-DSDRYTYFDNPILDFGDGVYFAATEKSNVIRGWIFGSTFDNTTQSAVIVNNSTHIIIRVCNFNLCKEPMYTVSR--GTQQSSW------VYQSAFNCTYDRVERSFQLDTAPKTG-NFKDLREYVFKNRDGFLSVYQTYTAVNLPRGLPIGFSVLRPILKLPFGINITSYRVVMAMFS---QT---TSNFLPESAAYYVGNLKYTTFMLRFNENGTITDAIDCAQNPLAELKCTIKNFNVSKGIYQTSNFRVSPTQEVVRFPNITNRCPFDKVFNATRFPSVYAWERTKISDCVADYTVLYNSTSFSTFKCYGVSPSKLIDLCFTSVYADTFLIRSSEVRQVAPGETGVIADYNYKLPDDFTGCVIAWNTAQQDKG-----QYYYRSSRKTKLKPFERDLSSDE--------------NGVRTLSTYDFYPTVPIEYQATRVVVLSFELLNAPATVCGPKLSTGLVKNQCVNFNFNGLKGTGVLTDSSKRFQSFQQFGRDTSDFTDSVRDPQTLQVLDITPCSFGGVSVITPGTNASSEVAVLYQDVNCTDVPTAIRADQLTPAWRVYSTGVNVFQTQAGCLIGAEHVNASYECDIPIGAGICASYHTASTL----RSVGQKSIVAYTMSLGAENSIAYANNSIAIPTNFSISVTTEVMPVSMAKTSVDCTMYICGDSQECSNLLLQYGSFCTQLNRALTGVALEQDKNTQEVFAQVKQMYKTPAIKDFGGFNFSQILPDPSKPTKRSFIEDLLFNKVTLADAGFMKQYGECLGDINARDLICAQKFNGLTVLPPLLTDDMIAAYTAALVSGTATAGWTFGAGAALQIPFAMQMAYRFNGIGVTQNVLYENQKQIANQFNKAISQIQESLTTTSTALGKLQDVVNQNAQALNTLVKQLSSNFGAISSVLNDILSRLDKVEAEVQIDRLITGRLQSLQTYVTQQLIRAAEIRASANLAATKMSECVLGQSKRVDFCGRGYHLMSFPQAAPHGVVFLHVTYVPSQEKNFTTAPAICHEGKAYFPREGVFVSNGTSWFITQRNFYSPQIITTDNTFVAGNCDVVIGIINNTVYDPLQPELDSFKEELDKYFKNHTSPDVDLGDISGINASVVNIQKEIDRLNEVAKNLNESLIDLQELGKYEQYIKWPWYVWLGFIAGLIAIVMATILLCCMTSCCSCLKGACSCGSCCKFDEDDSEPVLKGVKLHYT DQ071615__Bat_SARS_coronavirus_Rp3_ --MK--ILILAFLASLAKAQEGCGIISRKPQPKMAQVSSSRRGVYYNDDIFRSNVLHLTQDYFLPFDSNLTQYFSLNV-DSDRFTYFDNPILDFGDGVYFAATEKSNVIRGWIFGSTFDNTTQSAVIVNNSTHIIIRVCNFNLCKEPMYTVSR--GAQQSSW------VYQSAFNCTYDRVEKSFQLDTAPKTG-NFKDLREYVFKNRDGFLSVYQTYTAVNLPRGLPIGFSVLRPILKLPFGINITSYRVVMAMFS---QT---TSNFLPESAAYYVGNLKYTTFMLSFNENGTITNAIDCAQNPLAELKCTIKNFNVSKGIYQTSNFRVSPTQEVIRFPNITNRCPFDKVFNATRFPNVYAWERTKISDCVADYTVLYNSTSFSTFKCYGVSPSKLIDLCFTSVYADTFLIRSSEVRQVAPGETGVIADYNYKLPDDFTGCVIAWNTAKQDQG-----QYYYRSHRKTKLKPFERDLSSDE--------------NGVRTLSTYDFYPSVPVAYQATRVVVLSFELLNAPATVCGPKLSTQLVKNQCVNFNFNGLKGTGVLTESSKRFQSFQQFGRDTSDFTDSVRDPQTLEILDISPCSFGGVSVITPGTNASSEVAVLYQDVNCTDVPAAIHADQLTPAWRVYSTGTNVFQTQAGCLIGAEHVNASYECDIPIGAGICASYHTASTL----RSVGQKSIVAYTMSLGAENSIAYANNSIAIPTNFSISVTTEVMPVSMAKTSVDCTMYICGDSLECSNLLLQYGSFCTQLNRALSGIAIEQDKNTQEVFAQVKQMYKTPAIKDFGGFNFSQILPDPSKPTKRSFIEDLLFNKVTLADAGFMKQYGECLGDISARDLICAQKFNGLTVLPPLLTDEMIAAYTAALVSGTATAGWTFGAGSALQIPFAMQMAYRFNGIGVTQNVLYENQKQIANQFNKAISQIQESLTTTSTALGKLQDVVNQNAQALNTLVKQLSSNFGAISSVLNDILSRLDKVEAEVQIDRLITGRLQSLQTYVTQQLIRAAEIRASANLAATKMSECVLGQSKRVDFCGKGYHLMSFPQAAPHGVVFLHVTYVPSQERNFTTAPAICHEGKAYFPREGVFVSNGTSWFITQRNFYSPQIITTDNTFVAGSCDVVIGIINNTVYDPLQPELDSFKEELDKYFKNHTSPDVDLGDISGINASVVNIQKEIDRLNEVAKNLNESLIDLQELGKYEQYIKWPWYVWLGFIAGLIAIVMVTILLCCMTSCCSCLKGACSCGSCCKFDEDDSEPVLKGVKLHYT FJ211859__Recombinant_coronavirus_clone_Bat_SARS_CoV_ --MK--ILIFAFLANLAKAQEGCGIISRKPQPKMAQVSSSRRGVYYNDDIFRSDVLHLTQDYFLPFDSNLTQYFSLNV-DSDRYTYFDNPILDFGDGVYFAATEKSNVIRGWIFGSSFDNTTQSAVIVNNSTHIIIRVCNFNLCKEPMYTVSR--GTQQNAW------VYQSAFNCTYDRVEKSFQLDTTPKTG-NFKDLREYVFKNRDGFLSVYQTYTAVNLPRGLPTGFSVLKPILKLPFGINITSYRVVMAMFS---QT---TSNFLPESAAYYVGNLKYSTFMLRFNENGTITDAVDCSQNPLAELKCTIKNFNVDKGIYQTSNFRVSPTQEVIRFPNITNRCPFDKVFNATRFPNVYAWERTKISDCVADYTVLYNSTSFSTFKCYGVSPSKLIDLCFTSVYADTFLIRSSEVRQVAPGETGVIADYNYKLPDDFTGCVIAWNTAKHDTG-----NYYYRSHRKTKLKPFERDLSSDD----G---------NGVYTLSTYDFNPNVPVAYQATRVVVLSFELLNAPATVCGPKLSTELVKNQCVNFNFNGLKGTGVLTSSSKRFQSFQQFGRDTSDFTDSVRDPQTLEILDISPCSFGGVSVITPGTNASSEVAVLYQDVNCTDVPTAIRADQLTPAWRVYSTGVNVFQTQAGCLIGAEHVNASYECDIPIGAGICASYHTASVL----RSTGQKSIVAYTMSLGAENSIAYANNSIAIPTNFSISVTTEVMPVSMAKTAVDCTMYICGDSLECSNLLLQYGSFCTQLNRALTGIAIEQDKNTQEVFAQVKQMYKTPAIKDFGGFNFSQILPDPSKPTKRSFIEDLLFNKVTLADAGFMKQYGDCLGDVSARDLICAQKFNGLTVLPPLLTDEMVAAYTAALVSGTATAGWTFGAGAALQIPFAMQMAYRFNGIGVTQNVLYENQKLIANQFNSAIGKIQESLSSTASALGKLQDVVNQNAQALNTLVKQLSSNFGAISSVLNDILSRLDKVEAEVQIDRLITGRLQSLQTYVTQQLIRAAEIRASANLAATKMSECVLGQSKRVDFCGKGYHLMSFPQSAPHGVVFLHVTYVPSQEKNFTTAPAICHEGKAYFPREGVFVSNGTSWFITQRNFYSPQLITTDNTFVSGNCDVVIGIINNTVYDPLQPELDSFKEELDKYFKNHTSPDVDLGDISGINASVVNIQKEIDRLNEVAKNLNESLIDLQELGKYEQYIKWPWYVWLGFIAGLIAIVMVTILLCCMTSCCSCLKGACSCGSCCKFDEDDSEPVLKGVKLHYT DQ084199__bat_SARS_coronavirus_HKU3_2_ --MK--ILIFAFLANLAKAQEGCGIISRKPQPKMAQVSSSRRGVYYNDDIFRSDVLHLTQDYFLPFDSNLTQYFSLNV-DSDRYTYFDNPILDFGDGVYFAATEKSNVIRGWIFGSSFDNTTQSAVIVNNSTHIIIRVCNFNLCKEPMYTVSR--GTQQNAW------VYQSAFNCTYDRVEKSFQLDTTPKTG-NFKDLREYVFKNRDGFLSVYQTYTAVNLPRGLPTGFSVLKPILKLPFGINITSYRVVMAMFS---QT---TSNFLPESAAYYVGNLKYSTFMLRFNENGTITDAVDCSQNPLAELKCTIKNFNVDKGIYQTSNFRVSPTQEVIRFPNITNRCPFDKVFNATRFPNVYAWERTKISDCVADYTVLYNSTSFSTFKCYGVSPSKLIDLCFTSVYADTFLIRSSEVRQVAPGETGVIADYNYKLPDDFTGCVIAWNTAKHDTG-----NYYYRSHRKTKLKPFERDLSSDD----G---------NGVYTLSTYDFNPNVPVAYQATRVVVLSFELLNAPATVCGPKLSTELVKNQCVNFNFNGLKGTGVLTSSSKRFQSFQQFGRDTSDFTDSVRDPQTLEILDISPCSFGGVSVITPGTNASSEVAVLYQDVNCTDVPTAIRADQLTPAWRVYSTGVNVFQTQAGCLIGAEHVNASYECDIPIGAGICASYHTAFVL----RSTGQKSIVAYTMSLGAENSIAYANNSIAIPTNFSISVTTEVMPVSMAKTAVDCTMYICGDSLECSNLLLQYGSFCTQLNRALTGIAIEQDKNTQEVFAQVKQMYKTPAIKDFGGFNFSQILPDPSKPTKRSFIEDLLFNKVTLADAGFMKQYGDCLGDVSARDLICAQKFNGLTVLPPLLTDEMVAAYTAALVSGTATAGWTFGAGAALQIPFAMQMAYRFNGIGVTQNVLYENQKLIANQFNSAIGKIQESLSSTASALGKLQDVVNQNAQALNTLVKQLSSNFGAISSVLNDILSRLDKVEAEVQIDRLITGRLQSLQTYVTQQLIRAAEIRASANLAATKMSECVLGQSKRVDFCGKGYHLMSFPQSAPHGVVFLHVTYVPSQEKNFTTAPAICHEGKAYFPREGVFVSNGTSWFITQRNFYSPQLITTDNTFVSGNCDVVIGIINNTVYDPLQPELDSFKEELDKYFKNHTSPDVDLGDISGINASVVNIQKEIDRLNEVAKNLNESLIDLQELGKYEQYIKWPWYVWLGFIAGLIAIVMVTILLCCMTSCCSCLKGACSCGSCCKFDEDDSEPVLKGVKLHYT DQ412043__Bat_SARS_coronavirus_Rm1_ --MK--VLIFALLFSLAKAQEGCGIISRKPQPKMEKVSSSRRGVYYNDDIFRSDVLHLTQDYFLPFDSNLTQYFSLNI-DSNKYTYFDNPILDFGDGVYFAATEKSNVIRGWIFGSSFDNTTQSAIIVNNSTHIIIRVCNFNLCKEPMYTVSK--GTQQSSW------VYQSAFNCTYDRVEKSFQLDTAPKTG-NFKDLREYVFKNKGGFLRVYQTYTAVNLPRGFPAGFSVLRPILKLPFGINITSYRVVMTMFS---QF---NSNFLPESAAYYVGNLKYTTFMLSFNENGTITDAVDCSQNPLAELKCTIKNFNVSKGIYQTSNFRVTPTQEVVRFPNITNRCPFDKVFNASRFPNVYAWERTKISDCVADYTVLYNSTSFSTFKCYGVSPSKLIDLCFTSVYADTFLIRSSEVRQVAPGETGVIADYNYKLPDDFTGCVIAWNTAQQDQG-----QYYYRSYRKEKLKPFERDLSSDE--------------NGVYTLSTYDFYPSIPVEYQATRVVVLSFELLNAPATVCGPKLSTQLVKNQCVNFNFNGLRGTGVLTTSSKRFQSFQQFGRDTSDFTDSVRDPQTLEILDISPCSFGGVSVITPGTNASSEVAVLYQDVNCTDVPTSIHADQLTPAWRVYSTGVNVFQTQAGCLIGAEHVNASYECDIPIGAGICASYHTASVL----RSTGQKSIVAYTMSLGAENSIAYANNSIAIPTNFSISVTTEVMPVSIAKTSVDCTMYICGDSLECSNLLLQYGSFCTQLNRALTGIAIEQDKNTQEVFAQVKQMYKTPAIKDFGGFNFSQILPDPSKPTKRSFIEDLLFNKVTLADAGFMKQYGECLGDISARDLICAQKFNGLTVLPPLLTDEMIAAYTAALVSGTATAGWTFGAGSALQIPFAMQMAYRFNGIGVTQNVLYENQKQIANQFNKAISQIQESLTTTSTALGKLQDVVNQNAQALNTLVKQLSSNFGAISSVLNDILSRLDKVEAEVQIDRLITGRLQSLQTYVTQQLIRAAEIRASANLAATKMSECVLGQSKRVDFCGKGYHLMSFPQAAPHGVVFLHVTYVPSQERNFTTAPAICHEGKAYFPREGVFVSNGTSWFITQRNFYSPQIITTDNTFVAGNCDVVIGIINNTVYDPLQPELDSFKEELDKYFKNHTSPDVDLGDISGINASVVNIQKEIDRLNEVAKNLNESLIDLQELGKYEQYIKWPWYVWLGFIAGLIAIVMVTILLCCMTSCCSCLKGACSCGSCCKFDEDDSEPVLKGVKLHYT FJ211860__Recombinant_coronavirus_clone_Bat_SRBD_spike_glycoprotein_gene_ --MK--ILIFAFLANLAKAQEGCGIISRKPQPKMAQVSSSRRGVYYNDDIFRSDVLHLTQDYFLPFDSNLTQYFSLNV-DSDRYTYFDNPILDFGDGVYFAATEKSNVIRGWIFGSSFDNTTQSAVIVNNSTHIIIRVCNFNLCKEPMYTVSR--GTQQNAW------VYQSAFNCTYDRVEKSFQLDTTPKTG-NFKDLREYVFKNRDGFLSVYQTYTAVNLPRGLPTGFSVLKPILKLPFGINITSYRVVMAMFS---QT---TSNFLPESAAYYVGNLKYSTFMLRFNENGTITDAVDCSQNPLAELKCTIKNFNVDKGIYQTSNFRVSPTQEVIRFPNITNLCPFGEVFNATKFPSVYAWERKKISNCVADYSVLYNSTFFSTFKCYGVSATKLNDLCFSNVYADSFVVKGDDVRQIAPGQTGVIADYNYKLPDDFMGCVLAWNTRNIDATSTGNYNYKYRYLRHGKLRPFERDISNVPFSPDGKPCTP-PALNCYWPLNDYGFYTTTGIGYQPYRVVVLSFELLNAPATVCGPKLSTDLVKNQCVNFNFNGLKGTGVLTSSSKRFQSFQQFGRDTSDFTDSVRDPQTLEILDISPCSFGGVSVITPGTNASSEVAVLYQDVNCTDVPTAIRADQLTPAWRVYSTGVNVFQTQAGCLIGAEHVNASYECDIPIGAGICASYHTASVL----RSTGQKSIVAYTMSLGAENSIAYANNSIAIPTNFSISVTTEVMPVSMAKTAVDCTMYICGDSLECSNLLLQYGSFCTQLNRALTGIAIEQDKNTQEVFAQVKQMYKTPAIKDFGGFNFSQILPDPSKPTKRSFIEDLLFNKVTLADAGFMKQYGDCLGDVSARDLICAQKFNGLTVLPPLLTDEMVAAYTAALVSGTATAGWTFGAGAALQIPFAMQMAYRFNGIGVTQNVLYENQKLIANQFNSAIGKIQESLSSTASALGKLQDVVNQNAQALNTLVKQLSSNFGAISSVLNDILSRLDKVEAEVQIDRLITGRLQSLQTYVTQQLIRAAEIRASANLAATKMSECVLGQSKRVDFCGKGYHLMSFPQSAPHGVVFLHVTYVPSQEKNFTTAPAICHEGKAYFPREGVFVSNGTSWFITQRNFYSPQLITTDNTFVSGNCDVVIGIINNTVYDPLQPELDSFKEELDKYFKNHTSPDVDLGDISGINASVVNIQKEIDRLNEVAKNLNESLIDLQELGKYEQYIKWPWYVWLGFIAGLIAIVMVTILLCCMTSCCSCLKGACSCGSCCKFDEDDSEPVLKGVKLHYT 'KJ473814__BtRs_BetaCoV/HuB2013_' ------MILLLLFLSSAAAQEGCGVISNKPQRTFDQYSSTRRGVYYNDDIFRSDVLHLTQDYFLPFNTNVTRYLSLNA-AQNTIVYFDNHVIPFYDGIYFAATERSNVIRGWIFGSTFDNRSQSAIIVNNSTHILVKVCNFVLCTEPMFTVSR--NQHYKSW------VYQHARNCTYDVAYPSFQLDVSLKNNVNFRHLREFIFKNVDGFLKIYSSYEPINVVSGIPSGFSVLKPIMSLPLGINITGMRVVMTMFS---NT---QANFLTENAAYYVGYLKPRTFMLQFNSNGTIVNAVDCSQDPLSELKCTLKNFNVTKGIYQTSNFRVTPTQEVVRFPNITNRCPFDRVFNASRFPSVYAWERTKISDCVADYTVLYNSTSFSTFKCYGVSPSKLIDLCFTSVYADTFLIRSSEVRQVAPGETGVIADYNYKLPDDFTGCVIAWNTAKQDTG-----YYYYRSHRKTKLKPFERDLSSDD----G---------NGVYTLSTYDFNPNVPVAYQATRVVVLSFELLNAPATVCGPKLSTELVKNQCVNFNFNGLKGTGVLTKSSKRFQSFQQFGRDTSDFTDSVRDPQTLEILDISPCSFGGVSVITPGTNASSEVAVLYQDVNCTDVPTAIHADQLTPAWRVYSTGVNVFQTQAGCLIGAEHVNASYECDIPIGAGICASYHTASVL----RSTGQKSIVAYTMSLGAENSIAYANNSIAIPTNFSISVTTEVMPVSMTKTSVDCTMYICGDSLECSNLLLQYGSFCTQLNRALTGIAIEQDKNTQEVFAQVKQMYKTPAIKDFGGFNFSQILPDPSKPTKRSFIEDLLFNKVTLADAGFMKQYGECLGDISARDLICAQKFNGLTVLPPLLTDEMIAAYTAALVSGTATAGWTFGAGAALQIPFAMQMAYRFNGIGVTQNVLYENQKQIANQFNKAISQIQESLTTTSTALGKLQDVVNQNAQALNTLVKQLSSNFGAISSVLNDILSRLDKVEAEVQIDRLITGRLQSLQTYVTQQLIRAAEIRASANLAATKMSECVLGQSKRVDFCGKGYHLMSFPQAAPHGVVFLHVTYVPSQERNFTTAPAICHEGKAYFPREGVFVSNGTSWFITQRNFYSPQIITTDNTFVAGNCDVVIGIINNTVYDPLQPELDSFKEELDKYFKNHTSPDVDLGDISGINASVVNIQKEIDRLNEVAKNLNESLIDLQELGKYEQYIKWPWYVWLGFIAGLIAIVMVTILLCCMTSCCSCLRGACSCGSCCKFDEDDSEPVLKGVKLHYT KY417146__Bat_SARS_like_coronavirus_isolate_Rs4231_ --M--FIFLFFLTLTSGSDLESCTTFDDVQAPNYPQHSSSRRGVYYPDEIFRSDTLYLTQDLFLPFYSNVTGFHTINH-------RFDNPVIPFKDGVYFAATEKSNVVRGWVFGSTMNNKSQSVIIINNSTNVVIRACNFELCDNPFFAVSKPTGTQTHTM------IFDNAFNCTFEYISDSFSLDVAEKSG-NFKHLREFVFKNKDGFLYVYKGYQPIDVVRDLPSGFNILKPIFKLPLGINITNFRAILTAFL---PA---QDTWGTSAAAYFVGYLKPATFMLKYDENGTITDAVDCSQNPLAELKCSVKSFEIDKGIYQTSNFRVAPSKEVVRFPNITNLCPFGEVFNATTFPSVYAWERKRISNCVADYSVLYNSTSFSTFKCYGVSATKLNDLCFSNVYADSFVVKGDDVRQIAPGQTGVIADYNYKLPDDFLGCVLAWNTNSKDSSTSGNYNYLYRWVRRSKLNPYERDLSNDIYSPGGQSCSA-IGPNCYNPLRPYGFFTTAGVGHQPYRVVVLSFELLNAPATVCGPKLSTDLIKNQCVNFNFNGLTGTGVLTSSSKRFQPFQQFGRDVSDFTDSVRDPKTSEILDISPCSFGGVSVITPGTNTSSEVAVLYQDVNCTDVPVAIHADQLTPAWRIYSTGNNVFQTQAGCLIGAEHVDTSYECDIPIGAGICASYHTVSSL----RSTSQKSIVAYTMSLGADSSIAYSNNTIAIPTNFSISITTEVMPVSMAKTSVDCNMYICGDSTECANLLLQYGSFCTQLNRALSGIAVEQDRNTREVFAQVKQMYKTPALKDFGGFNFSQILPDPLKPTKRSFIEDLLFNKVTLADAGFMKQYGECLGDVNARDLICAQKFNGLTVLPPLLTDDMIAAYTAALVSGTATAGWTFGAGAALQIPFAMQMAYRFNGIGVTQNVLYENQKQIANQFNKAISQIQESLTTTSTALGKLQDVVNQNAQALNTLVKQLSSNFGAISSVLNDILSRLDKVEAEVQIDRLITGRLQSLQTYVTQQLIRAAEIRASANLAATKMSECVLGQSKRVDFCGKGYHLMSFPQAAPHGVVFLHVTCVPSQERNFTTAPAICHEGKAYFPREGVFVFNGTSWFITQRNFFSPQIITTDNTFVSGSCDVVIGIINNTVYDPLQPELDSFKEELDKYFKNHTSPDVDLGDISGINASVVNIQKEIDRLNEVAKNLNESLIDLQELGKYEQYIKWPWYVWLGFIAGLIAIVMVTILLCCMTSCCSCLKGACSCGSCCKFDEDDSEPVLKGVKLHYT KT444582__SARS_like_coronavirus_WIV16_ --M--FIFLFFLTLTSGSDLESCTTFDDVQAPNYPQHSSSRRGVYYPDEIFRSDTLYLTQDLFLPFYSNVTGFHTINH-------RFDNPVIPFKDGVYFAATEKSNVVRGWVFGSTMNNKSQSVIIINNSTNVVIRACNFELCDNPFFAVSKPTGTQTHTM------IFDNAFNCTFEYISDSFSLDVAEKSG-NFKHLREFVFKNKDGFLYVYKGYQPIDVVRDLPSGFNILKPIFKLPLGINITNFRAILTAFL---PA---QDTWGTSAAAYFVGYLKPATFMLKYDENGTITDAVDCSQNPLAELKCSVKSFEIDKGIYQTSNFRVAPSKEVVRFPNITNLCPFGEVFNATTFPSVYAWERKRISNCVADYSVLYNSTSFSTFKCYGVSATKLNDLCFSNVYADSFVVKGDDVRQIAPGQTGVIADYNYKLPDDFTGCVLAWNTRNIDATQTGNYNYKYRSLRHGKLRPFERDISNVPFSPDGKPCTP-PAFNCYWPLNDYGFYITNGIGYQPYRVVVLSFELLNAPATVCGPKLSTDLIKNQCVNFNFNGLTGTGVLTPSSKRFQPFQQFGRDVLDFTDSVRDPKTSEILDISPCSFGGVSVITPGTNTSSEVAVLYQDVNCTDVPVAIHADQLTPSWRVYSTGNNVFQTQAGCLIGAEHVDTSYECDIPIGAGICASYHTVSSL----RSTSQKSIVAYTMSLGADSSIAYSNNTIAIPTNFSISITTEVMPVSMAKTSVDCNMYICGDSTECANLLLQYGSFCTQLNRALSGIAVEQDRNTREVFAQVKQMYKTPTLKDFGGFNFSQILPDPLKPTKRSFIEDLLFNKVTLADAGFMKQYGECLGDINARDLICAQKFNGLTVLPPLLTDDMIAAYTAALVSGTATAGWTFGAGAALQIPFAMQMAYRFNGIGVTQNVLYENQKQIANQFNKAISQIQESLTTTSTALGKLQDVVNQNAQALNTLVKQLSSNFGAISSVLNDILSRLDKVEAEVQIDRLITGRLQSLQTYVTQQLIRAAEIRASANLAATKMSECVLGQSKRVDFCGKGYHLMSFPQAAPHGVVFLHVTYVPSQERNFTTAPAICHEGKAYFPREGVFVFNGTSWFITQRNFFSPQIITTDNTFVSGSCDVVIGIINNTVYDPLQPELDSFKEELDKYFKNHTSPDVDLGDISGINASVVNIQKEIDRLNEVAKNLNESLIDLQELGKYEQYIKWPWYVWLGFIAGLIAIVMVTILLCCMTSCCSCLKGACSCGSCCKFDEDDSEPVLKGVKLHYT AY390556__SARS_coronavirus_GZ02_ --M--FIFLLFLTLTSGSDLDRCTTFDDVQAPNYTQHTSSMRGVYYPDEIFRSDTLYLTQDLFLPFYSNVTGFHTINH-------TFDNPVIPFKDGIYFAATEKSNVVRGWVFGSTMNNKSQSVIIINNSTNVVIRACNFELCDNPFFAVSKPMGTQTHTM------IFDNAFNCTFEYISDAFSLDVSEKSG-NFKHLREFVFKNKDGFLYVYKGYQPIDVVRDLPSGFNTLKPIFKLPLGINITNFRAILTAFL---PA---QDTWGTSAAAYFVGYLKPTTFMLKYDENGTITDAVDCSQNPLAELKCSVKSFEIDKGIYQTSNFRVVPSRDVVRFPNITNLCPFGEVFNATKFPSVYAWERKRISNCVADYSVLYNSTFFSTFKCYGVSATKLNDLCFSNVYADSFVVKGDDVRQIAPGQTGVIADYNYKLPDDFMGCVLAWNTRNIDATSTGNYNYKYRYLRHGKLRPFERDISNVPFSPDGKPCTP-PALNCYWPLNDYGFYTTTGIGYQPYRVVVLSFELLNAPATVCGPKLSTDLIKNQCVNFNFNGLTGTGVLTPSSKRFQPFQQFGRDVSDFTDSVRDPKTSEILDISPCSFGGVSVITPGTNASSEVAVLYQDVNCTDVSTAIHADQLTPAWRIYSTGNNVFQTQAGCLIGAEHVDTSYECDIPIGAGICASYHTVSLL----RSTSQKSIVAYTMSLGADSSIAYSNNTIAIPTNFSISITTEVMPVSMAKTSVDCNMYICGDSTECANLLLQYGSFCTQLNRALSGIAAEQDRNTREVFAQVKQMYKTPTLKDFGGFNFSQILPDPLKPTKRSFIEDLLFNKVTLADAGFMKQYGECLGDINARDLICAQKFNGLTVLPPLLTDDMIAAYTAALVSGTATAGWTFGAGAALQIPFAMQMAYRFNGIGVTQNVLYENQKQIANQFNKAISQIQESLTTTSTALGKLQDVVNQNAQALNTLVKQLSSNFGAISSVLNDILSRLDKVEAEVQIDRLITGRLQSLQTYVTQQLIRAAEIRASANLAATKMSECVLGQSKRVDFCGKGYHLMSFPQAAPHGVVFLHVTYVPSQERNFTTAPAICHEGKAYFPREGVFVFNGTSWFITQRNFFSPQIITTDNTFVSGNCDVVIGIINNTVYDPLQPELDSFKEELDKYFKNHTSPDVDLGDISGINASVVNIQEEIDRLNEVAKNLNESLIDLQELGKYEQYIKWPWYVWLGFIAGLIAIVMVTILLCCMTSCCSCLKGACSCGSCCKFDEDDSEPVLKGVKLHYT KY417144__Bat_SARS_like_coronavirus_isolate_Rs4084_ --MK-LLVLVFATLVSSYTIEKCLDFDDRTPPANTQFLSSHRGVYYPDDIFRSNVLHLVQDHFLPFDSNVTRFITFGL-------NFDNPIIPFRDGIYFAATEKSNVIRGWVFGSTMNNKSQSVIIMNNSTNLVIRACNFELCDNPFFVVLKSNNTQIPSY------IFNNAFNCTFEYVSKDFNLDLGEKPG-NFKDLREFVFRNKDGFLHVYSGYQPISAASGLPTGFNALKPIFKLPLGINITNFRTLLTAFP---PR---PDYWGTSAAAYFVGYLKPTTFMLKYDENGTITDAVDCSQNPLAELKCSVKSFEIDKGIYQTSNFRVAPSKEVVRFPNITNLCPFGEVFNATTFPSVYAWERKRISNCVADYSILYNSTSFSTFKCYGVSATKLNDLCFSNVYADSFVVKGDDVRQIAPGQTGVIADYNYKLPDDFLGCVLAWNTNSKDSSTSGNYNYLYRWVRRSKLNPYERDLSNDIYSPGGQSCSA-VGPNCYNPLRPYGFFTTAGVGHQPYRVVVLSFELLNAPATVCGPKLSTDLIKNQCVNFNFNGLTGTGVLTPSSKRFQPFQQFGRDVSDFTDSVRDPKTSEILDISPCSFGGVSVITPGTNTSSEVAVLYQDVNCTDVPVAIHADQLTPSWRVYSTGNNVFQTQAGCLIGAEHVDTSYECDIPIGAGICASYHTVSSL----RSTSQKSIVAYTMSLGADSSIAYSNNTIAIPTNFSISITTEVMPVSMAKTSVDCNMYICGDSTECANLLLQYGSFCTQLNRALSGIAVEQDRNTREVFAQVKQMYKTPTLKDFGGFNFSQILPDPLKPTKRSFIEDLLFNKVTLADAGFMKQYGECLGDINARDLICAQKFNGLTVLPPLLTDDMIAAYTAALVSGTATAGWTFGAGAALQIPFAMQMAYRFNGIGVTQNVLYENQKQIANQFNKAISQIQESLTTTSTALGKLQDVVNQNAQALNTLVKQLSSNFGAISSVLNDILSRLDKVEAEVQIDRLITGRLQSLQTYVTQQLIRAAEIRASANLAATKMSECVLGQSKRVDFCGKGYHLMSFPQAAPHGVVFLHVTYVPSQERNFTTAPAICHEGKAYFPREGVFVFNGTSWFITQRNFFSPQIITTDNTFVSGSCDVVIGIINNTVYDPLQPELDSFKEELDKYFKNHTSPDVDLGDISGINASVVNIQKEIDRLNEVAKNLNESLIDLQELGKYEQYIKWPWYVWLGFIAGLIAIVMVTILLCCMTSCCSCLKGACSCGSCCKFDEDDSEPVLKGVKLHYT KC881006__Bat_SARS_like_coronavirus_Rs3367_ --MK-LLVLVFATLVSSYTIEKCLDFDDRTPPANTQFLSSHRGVYYPDDIFRSNVLHLVQDHFLPFDSNVTRFITFGL-------NFDNPIIPFKDGIYFAATEKSNVIRGWVFGSTMNNKSQSVIIMNNSTNLVIRACNFELCDNPFFVVLKSNNTQIPSY------IFNNAFNCTFEYVSKDFNLDLGEKPG-NFKDLREFVFRNKDGFLHVYSGYQPISAASGLPTGFNALKPIFKLPLGINITNFRTLLTAFP---PR---PDYWGTSAAAYFVGYLKPTTFMLKYDENGTITDAVDCSQNPLAELKCSVKSFEIDKGIYQTSNFRVAPSKEVVRFPNITNLCPFGEVFNATTFPSVYAWERKRISNCVADYSVLYNSTSFSTFKCYGVSATKLNDLCFSNVYADSFVVKGDDVRQIAPGQTGVIADYNYKLPDDFTGCVLAWNTRNIDATQTGNYNYKYRSLRHGKLRPFERDISNVPFSPDGKPCTP-PAFNCYWPLNDYGFYITNGIGYQPYRVVVLSFELLNAPATVCGPKLSTDLIKNQCVNFNFNGLTGTGVLTPSSKRFQPFQQFGRDVSDFTDSVRDPKTSEILDISPCSFGGVSVITPGTNTSSEVAVLYQDVNCTDVPVAIHADQLTPSWRVYSTGNNVFQTQAGCLIGAEHVDTSYECDIPIGAGICASYHTVSSL----RSTSQKSIVAYTMSLGADSSIAYSNNTIAIPTNFSISITTEVMPVSMAKTSVDCNMYICGDSTECANLLLQYGSFCTQLNRALSGIAVEQDRNTREVFAQVKQMYKTPTLKDFGGFNFSQILPDPLKPTKRSFIEDLLFNKVTLADAGFMKQYGECLGDINARDLICAQKFNGLTVLPPLLTDDMIAAYTAALVSGTATAGWTFGAGAALQIPFAMQMAYRFNGIGVTQNVLYENQKQIANQFNKAISQIQESLTTTSTALGKLQDVVNQNAQALNTLVKQLSSNFGAISSVLNDILSRLDKVEAEVQIDRLITGRLQSLQTYVTQQLIRAAEIRASANLAATKMSECVLGQSKRVDFCGKGYHLMSFPQAAPHGVVFLHVTYVPSQERNFTTAPAICHEGKAYFPREGVFVFNGTSWFITQRNFFSPQIITTDNTFVSGSCDVVIGIINNTVYDPLQPELDSFKEELDKYFKNHTSPDVDLGDISGINASVVNIQKEINRLNEVAKNLNESLIDLQELGKYEQYIKWPWYVWLGFIAGLIAIVMVTILLCCMTSCCSCLKGACSCGSCCKFDEDDSEPVLKGVKLHYT KF569996__Rhinolophus_affinis_coronavirus_isolate_LYRa11_ MFLTCFILSFSLFCVSGDSIDTCETFDDVSPPQQNLVSSSKRGVYYPDDIYRSDVHHLVQDLFLPFNSNVVGLMSFNY-------RFDNPIIPFKDGVYFAATEKSNVVRGWVFGSTMNNKSQSVIIMNNSTNVVIRACNFQLCDNPFFAVIRPTSQQIETI------LFENAFNCTFEYVSDSFLMDVGEKPG-NFKHLREFIFKNKDGFLNIYSGFQNIDVANGLPSGFSLLKPLLKLPLGLNITNFRVLLTAFI---PN---IGTWGTSPVAYFVGYLKPTTFMLKYDYNGTIVDAVDCSQHPLAELKCSVKSFEIDKGIYQTSNFRVSPSKEVVRFPNITNLCPFGEVFNATTFPSVYAWERKRISNCVADYSVLYNSTSFSTFKCYGVSAIKLNDLCFSNVYADSFVVKGDDVRQIAPGQTGVIADYNYKLPDDFMGCVLAWNTRNIDATSSGNFNYKYRSLRHGKLRPFERDISNVPFSPDGKPCTP-PAFNCYWPLNDYGFYTTNGIGYQPYRVVVLSFELLNAPATVCGPKLSTDLITNQCVNFNFNGLTGTGVLTPSLKRFQPFQQFGRDFSDFTDSVRDPKTLEVLDISPCSFGGVSVITPGTNISSEVAVLYQDVNCTDVPTAIHADQLTPAWRIYSAGVNVFQTQAGCLIGAEHVNASYECDIPIGAGICASYHTASLL----RNTDQKSIVAYTMSLGAENSIAYANNSIAIPTNFSISITTEVMPVSMAKTSVDCTMYICGDSQECSNLLLQYGSFCTQLNRALSGIAVEQDKNTQEVFAQVKQIYKTPAIKDFGGFNFSQILPDPSKPTKRSFIEDLLFNKVTLADAGFMKQYGECLGDISARDLICAQKFNGLTVLPPLLTDEMIAAYTAALVSGTATAGWTFGAGAALQIPFAMQMAYRFNGIGVTQNVLYENQKQIANQFNKAISQIQESLTTTSTALGKLQDVVNQNAQALNTLVKQLSSNFGAISSVLNDILSRLDKVEAEVQIDRLITGRLQSLQTYVTQQLIRAAEIRASANLAATKMSECVLGQSKRVDFCGKGYHLMSFPQAAPHGVVFLHVTYVPSQERNFTTAPAICHEGKAYFPREGVFVSNGTSWFITQRNFFSPQLITTDNTFVSGNCDVVIGIINNTVYDPLQPELDSFKEELDKYFKNHTSPDVDLGDISRINASVVNIQKEIDRLNEVAKNLNESLIDLQELGKYEQYIKWPWYVWLGFIAGLIAIVMATILLCCMTSCCSCLKGACSCGSCCKFDEDDSEPVLKGVKLHYT MG772934__Bat_SARS_like_coronavirus_isolate_bat_SL_CoVZXC21_ -------MLFFLFLQFALVNSQC-DLTGRTPLNPNYTNSSQRGVYYPDTIYRSDTLVLSQGYFLPFYSNVSWYYSLTT-NNAATKRTDNPILDFKDGIYFAATEHSNIVRGWIFGTTLDNTSQSLLIVNNATNVIIKVCNFDFCYDPYLSGYY---HNNKTWSIREFAVYSFYANCTFEYVSKSFMLNISGNGG-LFNTLREFVFRNVDGHFKIYSKFTPVNLNRGLPTGLSVLQPLVELPVSINITKFRTLLTIHRGDPMS---NNGWTAFSAAYFVGYLKPRTFMLKYNENGTITDAVDCALDPLSETKCTLKSLSVQKGIYQTSNFRVQPTQSIVRFPNITNVCPFHKVFNATRFPSVYAWERTKISDCIADYTVFYNSTSFSTFKCYGVSPSKLIDLCFTSVYADTFLIRFSEVRQVAPGQTGVIADYNYKLPDDFTGCVIAWNTAKQDTG-----HYFYRSHRSTKLKPFERDLSSDE--------------NGVRTLSTYDFNPNVPLEYQATRVVVLSFELLNAPATVCGPKLSTQLVKNQCVNFNFNGLKGTGVLTDSSKRFQSFQQFGKDASDFIDSVRDPQTLEILDITPCSFGGVSVITPGTNTSSEVAVLYQDVNCTDVPTTIHADQLTPAWRIYAIGTSVFQTQAGCLIGAEHVNASYECDIPIGAGICASYHTASIL----RSTGQKAIVAYTMSLGAENSIAYANNSIAIPTNFSISVTTEVMPVSMAKTSVDCTMYICGDSIECSNLLLQYGSFCTQLNRALSGIAIEQDKNTQEVFAQVKQIYKTPPIKDFGGFNFSQILPDPSKPSKRSFIEDLLFNKVTLADAGFIKQYGDCLGDISARDLICAQKFNGLTVLPPLLTDEMIAAYTAALISGTATAGWTFGAGAALQIPFAMQMAYRFNGIGVTQNVLYENQKLIANQFNSAIGKIQESLTSTASALGKLQDVVNQNAQALNTLVKQLSSNFGAISSVLNDILSRLDKVEAEVQIDRLITGRLQSLQTYVTQQLIRAAEIRASANLAATKMSECVLGQSKRVDFCGKGYHLMSFPQSAPHGVVFLHVTYIPSQEKNFTTAPAICHEGKAHFPREGVFVSNGTHWFVTQRNFYEPQIITTDNTFVSGNCDVVIGIINNTVYDPLQPELDSFKEELDKYFKNHTSPDIDLGDISGINASVVNIQKEIDRLNEVARNLNESLIDLQELGKYEHYIKWPWYVWLGFIAGLIAIVMVTILLCCMTSCCSCLKGCCSCGFCCKFDEDDSEPVLKGVKLHYT MG772933__Bat_SARS_like_coronavirus_isolate_bat_SL_CoVZC45_ -------MLFFLFLQFALVNSQCVNLTGRTPLNPNYTNSSQRGVYYPDTIYRSDTLVLSQGYFLPFYSNVSWYYSLTT-NNAATKRTDNPILDFKDGIYFAATEHSNIIRGWIFGTTLDNTSQSLLIVNNATNVIIKVCNFDFCYDPYLSGYY---HNNKTWSIREFAVYSSYANCTFEYVSKSFMLNISGNGG-LFNTLREFVFRNVDGHFKIYSKFTPVNLNRGLPTGLSVLQPLVELPVSINITKFRTLLTIHRGDPMP---NNGWTAFSAAYFVGYLKPRTFMLKYNENGTITDAVDCALDPLSETKCTLKSLTVQKGIYQTSNFRVQPTQSVVRFPNITNVCPFHKVFNATRFPSVYAWERTKISDCIADYTVFYNSTSFSTFKCYGVSPSKLIDLCFTSVYADTFLIRFSEVRQVAPGQTGVIADYNYKLPDDFTGCVIAWNTAKQDVG-----NYFYRSHRSTKLKPFERDLSSDE--------------NGVRTLSTYDFNPNVPLEYQATRVVVLSFELLNAPATVCGPKLSTQLVKNQCVNFNFNGLKGTGVLTDSSKRFQSFQQFGKDASDFIDSVRDPQTLEILDITPCSFGGVSVITPGTNTSLEVAVLYQDVNCTDVPTTIHADQLTPAWRIYATGTNVFQTQAGCLIGAEHVNASYECDIPIGAGICASYHTASIL----RSTSQKAIVAYTMSLGAENSIAYANNSIAIPTNFSISVTTEVMPVSMAKTSVDCTMYICGDSIECSNLLLQYGSFCTQLNRALSGIAIEQDKNTQEVFAQVKQIYKTPPIKDFGGFNFSQILPDPSKPSKRSFIEDLLFNKVTLADAGFIKQYGDCLGGISARDLICAQKFNGLTVLPPLLTDEMIAAYTAALISGTATAGWTFGAGAALQIPFAMQMAYRFNGIGVTQNVLYENQKLIANQFNSAIGKIQESLTSTASALGKLQDVVNQNAQALNTLVKQLSSNFGAISSVLNDILSRLDKVEAEVQIDRLITGRLQSLQTYVTQQLIRAAEIRASANLAATKMSECVLGQSKRVDFCGKGYHLMSFPQSAPHGVVFLHVTYIPSQEKNFTTAPAICHEGKAHFPREGVFVSNGTHWFVTQRNFYEPKIITTDNTFVSGNCDVVIGIINNTVYDPLQPELDSFKEELDKYFKNHTSPDIDLGDISGINASVVNIQKEIDRLNEVARNLNESLIDLQELGKYEQYIKWPWYVWLGFIAGLIAIVMVTILLCCMTSCCSCLKGCCSCGSCCKFDEDDSEPVLKGVKLHYT ; end; begin trees; tree ML_tree = [&R] (AY390556__SARS_coronavirus_GZ02_[&Organism="SARS coronavirus GZ02","Genetic Code"="Standard",labelFont="SansSerif:12:true:false",Taxonomy="Viruses; Riboviria; Nidovirales; Cornidovirineae; Coronaviridae; Orthocoronavirinae; Betacoronavirus; Sarbecovirus"]:0.01165598000000001,((KT444582__SARS_like_coronavirus_WIV16_[&labelFont="SansSerif:12:true:false"]:0.003942000000000001,KY417146__Bat_SARS_like_coronavirus_isolate_Rs4231_[&labelFont="SansSerif:12:true:false",nodeColor="0,0,255",Grouping="1"]:0.03568360000000004)[&labelFont="SansSerif:12:true:false","bootstrap proportion"=47.0]:0.0022192699999999954,((KY417144__Bat_SARS_like_coronavirus_isolate_Rs4084_[&labelFont="SansSerif:12:true:false",nodeColor="0,0,255",Grouping="1"]:0.03352250999999995,KC881006__Bat_SARS_like_coronavirus_Rs3367_[&labelFont="SansSerif:12:true:false"]:0.0019512200000000313)[&labelFont="SansSerif:12:true:false","bootstrap proportion"=100.0]:0.053572460000000044,(KF569996__Rhinolophus_affinis_coronavirus_isolate_LYRa11_[&labelFont="SansSerif:12:true:false"]:0.05717706,(FJ211860__Recombinant_coronavirus_clone_Bat_SRBD_spike_glycoprotein_gene_[&labelFont="SansSerif:12:true:false",nodeColor="0,0,255",Grouping="1"]:0.000907,(DQ084199__bat_SARS_coronavirus_HKU3_2_[&labelFont="SansSerif:12:true:false"]:0.000827,(FJ211859__Recombinant_coronavirus_clone_Bat_SARS_CoV_[&labelFont="SansSerif:12:true:false"]:0.0,((DQ071615__Bat_SARS_coronavirus_Rp3_[&labelFont="SansSerif:12:true:false"]:0.01568217000000005,(KY417148__Bat_SARS_like_coronavirus_isolate_Rs4247_[&labelFont="SansSerif:12:true:false"]:0.0016536299999999615,('MK211375__Coronavirus_BtRs_BetaCoV/YN2018A_'[&labelFont="SansSerif:12:true:false"]:0.0017566300000000368,(KY417142__Bat_SARS_like_coronavirus_isolate_As6526_[&labelFont="SansSerif:12:true:false"]:0.005269129999999955,'MK211378__Coronavirus_BtRs_BetaCoV/YN2018D_'[&labelFont="SansSerif:12:true:false",nodeColor="0,0,255",Grouping="1"]:0.07419165999999999)[&labelFont="SansSerif:12:true:false","bootstrap proportion"=50.0]:0.0075223300000000215)[&labelFont="SansSerif:12:true:false","bootstrap proportion"=37.0]:0.004053700000000049)[&labelFont="SansSerif:12:true:false","bootstrap proportion"=59.0]:0.010595840000000023)[&labelFont="SansSerif:12:true:false","bootstrap proportion"=32.0]:0.004022790000000054,(DQ412043__Bat_SARS_coronavirus_Rm1_[&labelFont="SansSerif:12:true:false"]:0.023352240000000024,('KJ473814__BtRs_BetaCoV/HuB2013_'[&labelFont="SansSerif:12:true:false",nodeColor="0,0,255",Grouping="1"]:0.06632402000000004,((MG772934__Bat_SARS_like_coronavirus_isolate_bat_SL_CoVZXC21_[&labelFont="SansSerif:12:true:false"]:0.008533049999999931,MG772933__Bat_SARS_like_coronavirus_isolate_bat_SL_CoVZC45_[&labelFont="SansSerif:12:true:false"]:0.004883899999999941)[&labelFont="SansSerif:12:true:false","bootstrap proportion"=100.0]:0.022178400000000043,(MT084071__Pangolin_coronavirus_isolate_MP789_[&"# Nucleotide Sequences With Mates"=0,Organism="Pangolin coronavirus",Description="Pangolin coronavirus isolate MP789 genomic sequence",Modified=Mon Mar 16 16:48:31 ECT 2020,"Genetic Code"="Standard",labelFont="SansSerif:12:true:false",Taxonomy="Viruses; Riboviria; Nidovirales; Cornidovirineae; Coronaviridae; Orthocoronavirinae; Betacoronavirus; unclassified Betacoronavirus","Mean Coverage"=1.99039647870886,Topology="linear","Alignment method"="MAFFT Alignment",Created=Mon Mar 09 08:59:37 ECT 2020,URN="urn:local:.:caf-bnocubz","Free end gaps"=true,"Ref Seq Name"="","Molecule Type"="AA"]:0.015539799999999993,(MN996532__Bat_coronavirus_RaTG13_[&Organism="Bat coronavirus RaTG13","Genetic Code"="Standard",labelFont="SansSerif:12:true:false",Taxonomy="Viruses; Riboviria; Nidovirales; Cornidovirineae; Coronaviridae; unclassified Coronaviridae",nodeColor="0,0,255",Grouping="1"]:0.019610400000000028,MN908947__Wuhan_seafood_market_pneumonia_virus_isolate_Wuhan_Hu_1_SARS_CoV_2_[&labelFont="SansSerif:12:true:false"]:0.005122300000000024)[&labelFont="SansSerif:12:true:false",nodeColor="0,0,255","bootstrap proportion"=100.0]:0.11385977999999997)[&labelFont="SansSerif:12:true:false",nodeColor="0,0,255","bootstrap proportion"=96.0]:0.1384957)[&labelFont="SansSerif:12:true:false","bootstrap proportion"=100.0]:0.21644584)[&labelFont="SansSerif:12:true:false","bootstrap proportion"=56.0]:0.04949855999999997)[&labelFont="SansSerif:12:true:false","bootstrap proportion"=25.0]:0.008476330000000032)[&labelFont="SansSerif:12:true:false","bootstrap proportion"=63.0]:0.02586668999999997)[&labelFont="SansSerif:12:true:false","bootstrap proportion"=7.0]:0.0)[&labelFont="SansSerif:12:true:false","bootstrap proportion"=63.0]:0.053869900000000026)[&labelFont="SansSerif:12:true:false","bootstrap proportion"=100.0]:0.18901747000000002)[&labelFont="SansSerif:12:true:false","bootstrap proportion"=100.0]:0.04564729000000001)[&labelFont="SansSerif:12:true:false","bootstrap proportion"=83.0]:0.025983089999999986)[&labelFont="SansSerif:12:true:false"]:0.01165598000000001)[&labelFont="SansSerif:12:true:false"]; tree bootstrap_1 = [&U] (MN996532__Bat_coronavirus_RaTG13_[&Organism="Bat coronavirus RaTG13","Genetic Code"="Standard",Taxonomy="Viruses; Riboviria; Nidovirales; Cornidovirineae; Coronaviridae; unclassified Coronaviridae"]:0.01942082,MN908947__Wuhan_seafood_market_pneumonia_virus_isolate_Wuhan_Hu_1_SARS_CoV_2_:0.00149864,(MT084071__Pangolin_coronavirus_isolate_MP789_[&"# Nucleotide Sequences With Mates"=0,Organism="Pangolin coronavirus",Description="Pangolin coronavirus isolate MP789 genomic sequence",Modified=Mon Mar 16 16:48:31 ECT 2020,"Genetic Code"="Standard",Taxonomy="Viruses; Riboviria; Nidovirales; Cornidovirineae; Coronaviridae; Orthocoronavirinae; Betacoronavirus; unclassified Betacoronavirus","Mean Coverage"=1.99039647870886,Topology="linear","Alignment method"="MAFFT Alignment",Created=Mon Mar 09 08:59:37 ECT 2020,URN="urn:local:.:caf-bnocubz","Free end gaps"=true,"Ref Seq Name"="","Molecule Type"="AA"]:0.02599036,((MG772933__Bat_SARS_like_coronavirus_isolate_bat_SL_CoVZC45_:0.00408465,MG772934__Bat_SARS_like_coronavirus_isolate_bat_SL_CoVZXC21_:0.00797209):0.01840226,((KF569996__Rhinolophus_affinis_coronavirus_isolate_LYRa11_:0.06962265,((KY417144__Bat_SARS_like_coronavirus_isolate_Rs4084_:0.02850118,KC881006__Bat_SARS_like_coronavirus_Rs3367_:0.00137617):0.05506832,(AY390556__SARS_coronavirus_GZ02_[&Organism="SARS coronavirus GZ02","Genetic Code"="Standard",Taxonomy="Viruses; Riboviria; Nidovirales; Cornidovirineae; Coronaviridae; Orthocoronavirinae; Betacoronavirus; Sarbecovirus"]:0.02345147,(KT444582__SARS_like_coronavirus_WIV16_:0.00190228,KY417146__Bat_SARS_like_coronavirus_isolate_Rs4231_:0.026946):0.00505725):0.02284315):0.0445845):0.16809531,('KJ473814__BtRs_BetaCoV/HuB2013_':0.06410141,('MK211378__Coronavirus_BtRs_BetaCoV/YN2018D_':0.04050864,(KY417148__Bat_SARS_like_coronavirus_isolate_Rs4247_:0.0,((KY417142__Bat_SARS_like_coronavirus_isolate_As6526_:0.01542245,'MK211375__Coronavirus_BtRs_BetaCoV/YN2018A_':0.00255203):0.00342108,((DQ084199__bat_SARS_coronavirus_HKU3_2_:0.0,(FJ211859__Recombinant_coronavirus_clone_Bat_SARS_CoV_:0.0,FJ211860__Recombinant_coronavirus_clone_Bat_SRBD_spike_glycoprotein_gene_:0.04550697):0.0):0.02589152,(DQ071615__Bat_SARS_coronavirus_Rp3_:0.00700219,DQ412043__Bat_SARS_coronavirus_Rm1_:0.03541368):0.00681319):0.00943993):0.000708):0.04155399):0.04065127):0.05188428):0.18886483):0.1214897):0.10594247); tree bootstrap_2 = [&U] (MN996532__Bat_coronavirus_RaTG13_[&Organism="Bat coronavirus RaTG13","Genetic Code"="Standard",Taxonomy="Viruses; Riboviria; Nidovirales; Cornidovirineae; Coronaviridae; unclassified Coronaviridae"]:0.01831978,MN908947__Wuhan_seafood_market_pneumonia_virus_isolate_Wuhan_Hu_1_SARS_CoV_2_:0.00452212,(MT084071__Pangolin_coronavirus_isolate_MP789_[&"# Nucleotide Sequences With Mates"=0,Organism="Pangolin coronavirus",Description="Pangolin coronavirus isolate MP789 genomic sequence",Modified=Mon Mar 16 16:48:31 ECT 2020,"Genetic Code"="Standard",Taxonomy="Viruses; Riboviria; Nidovirales; Cornidovirineae; Coronaviridae; Orthocoronavirinae; Betacoronavirus; unclassified Betacoronavirus","Mean Coverage"=1.99039647870886,Topology="linear","Alignment method"="MAFFT Alignment",Created=Mon Mar 09 08:59:37 ECT 2020,URN="urn:local:.:caf-bnocubz","Free end gaps"=true,"Ref Seq Name"="","Molecule Type"="AA"]:0.02052971,((MG772934__Bat_SARS_like_coronavirus_isolate_bat_SL_CoVZXC21_:0.01499801,MG772933__Bat_SARS_like_coronavirus_isolate_bat_SL_CoVZC45_:0.00421424):0.08406924,((KF569996__Rhinolophus_affinis_coronavirus_isolate_LYRa11_:0.07731977,(AY390556__SARS_coronavirus_GZ02_[&Organism="SARS coronavirus GZ02","Genetic Code"="Standard",Taxonomy="Viruses; Riboviria; Nidovirales; Cornidovirineae; Coronaviridae; Orthocoronavirinae; Betacoronavirus; Sarbecovirus"]:0.01549162,(KY417146__Bat_SARS_like_coronavirus_isolate_Rs4231_:0.04454879,(KT444582__SARS_like_coronavirus_WIV16_:0.0,(KY417144__Bat_SARS_like_coronavirus_isolate_Rs4084_:0.04916179,KC881006__Bat_SARS_like_coronavirus_Rs3367_:0.0):0.06720487):0.00779534):0.00825419):0.04242786):0.08214497,(FJ211860__Recombinant_coronavirus_clone_Bat_SRBD_spike_glycoprotein_gene_:0.00195528,((DQ084199__bat_SARS_coronavirus_HKU3_2_:0.0,FJ211859__Recombinant_coronavirus_clone_Bat_SARS_CoV_:0.0):0.0,((DQ412043__Bat_SARS_coronavirus_Rm1_:0.01425858,'KJ473814__BtRs_BetaCoV/HuB2013_':0.11576152):0.00968793,(DQ071615__Bat_SARS_coronavirus_Rp3_:0.01358163,(('MK211375__Coronavirus_BtRs_BetaCoV/YN2018A_':0.00276751,KY417148__Bat_SARS_like_coronavirus_isolate_Rs4247_:0.00395624):0.00293665,('MK211378__Coronavirus_BtRs_BetaCoV/YN2018D_':0.06402415,KY417142__Bat_SARS_like_coronavirus_isolate_As6526_:0.00777525):0.00710174):0.01113773):0.00369054):0.01647847):0.05298768):0.10528234):0.22054334):0.07543701):0.1148191); tree bootstrap_3 = [&U] (MN996532__Bat_coronavirus_RaTG13_[&Organism="Bat coronavirus RaTG13","Genetic Code"="Standard",Taxonomy="Viruses; Riboviria; Nidovirales; Cornidovirineae; Coronaviridae; unclassified Coronaviridae"]:0.03106014,MN908947__Wuhan_seafood_market_pneumonia_virus_isolate_Wuhan_Hu_1_SARS_CoV_2_:0.00555443,(MT084071__Pangolin_coronavirus_isolate_MP789_[&"# Nucleotide Sequences With Mates"=0,Organism="Pangolin coronavirus",Description="Pangolin coronavirus isolate MP789 genomic sequence",Modified=Mon Mar 16 16:48:31 ECT 2020,"Genetic Code"="Standard",Taxonomy="Viruses; Riboviria; Nidovirales; Cornidovirineae; Coronaviridae; Orthocoronavirinae; Betacoronavirus; unclassified Betacoronavirus","Mean Coverage"=1.99039647870886,Topology="linear","Alignment method"="MAFFT Alignment",Created=Mon Mar 09 08:59:37 ECT 2020,URN="urn:local:.:caf-bnocubz","Free end gaps"=true,"Ref Seq Name"="","Molecule Type"="AA"]:0.01756613,((MG772933__Bat_SARS_like_coronavirus_isolate_bat_SL_CoVZC45_:0.00484849,MG772934__Bat_SARS_like_coronavirus_isolate_bat_SL_CoVZXC21_:0.00785271):0.02504913,('KJ473814__BtRs_BetaCoV/HuB2013_':0.08278705,((DQ084199__bat_SARS_coronavirus_HKU3_2_:0.00165001,(FJ211859__Recombinant_coronavirus_clone_Bat_SARS_CoV_:0.0,(FJ211860__Recombinant_coronavirus_clone_Bat_SRBD_spike_glycoprotein_gene_:0.0,(KF569996__Rhinolophus_affinis_coronavirus_isolate_LYRa11_:0.07700634,(AY390556__SARS_coronavirus_GZ02_[&Organism="SARS coronavirus GZ02","Genetic Code"="Standard",Taxonomy="Viruses; Riboviria; Nidovirales; Cornidovirineae; Coronaviridae; Orthocoronavirinae; Betacoronavirus; Sarbecovirus"]:0.02153241,(KY417146__Bat_SARS_like_coronavirus_isolate_Rs4231_:0.0490281,(KT444582__SARS_like_coronavirus_WIV16_:0.000923,(KC881006__Bat_SARS_like_coronavirus_Rs3367_:0.000041,KY417144__Bat_SARS_like_coronavirus_isolate_Rs4084_:0.05126616):0.07957979):0.00413135):0.00882835):0.0478933):0.19937256):0.05610938):0.0):0.02404675,((DQ071615__Bat_SARS_coronavirus_Rp3_:0.011913,DQ412043__Bat_SARS_coronavirus_Rm1_:0.03216019):0.00852476,(KY417148__Bat_SARS_like_coronavirus_isolate_Rs4247_:0.00179892,('MK211375__Coronavirus_BtRs_BetaCoV/YN2018A_':0.000859,(KY417142__Bat_SARS_like_coronavirus_isolate_As6526_:0.00295564,'MK211378__Coronavirus_BtRs_BetaCoV/YN2018D_':0.09042482):0.01252806):0.00474928):0.01706906):0.00980154):0.08286973):0.22027798):0.19196469):0.10821827); tree bootstrap_4 = [&U] (MN996532__Bat_coronavirus_RaTG13_[&Organism="Bat coronavirus RaTG13","Genetic Code"="Standard",Taxonomy="Viruses; Riboviria; Nidovirales; Cornidovirineae; Coronaviridae; unclassified Coronaviridae"]:0.01560314,MN908947__Wuhan_seafood_market_pneumonia_virus_isolate_Wuhan_Hu_1_SARS_CoV_2_:0.00766734,(MT084071__Pangolin_coronavirus_isolate_MP789_[&"# Nucleotide Sequences With Mates"=0,Organism="Pangolin coronavirus",Description="Pangolin coronavirus isolate MP789 genomic sequence",Modified=Mon Mar 16 16:48:31 ECT 2020,"Genetic Code"="Standard",Taxonomy="Viruses; Riboviria; Nidovirales; Cornidovirineae; Coronaviridae; Orthocoronavirinae; Betacoronavirus; unclassified Betacoronavirus","Mean Coverage"=1.99039647870886,Topology="linear","Alignment method"="MAFFT Alignment",Created=Mon Mar 09 08:59:37 ECT 2020,URN="urn:local:.:caf-bnocubz","Free end gaps"=true,"Ref Seq Name"="","Molecule Type"="AA"]:0.01728176,((MG772933__Bat_SARS_like_coronavirus_isolate_bat_SL_CoVZC45_:0.00634244,MG772934__Bat_SARS_like_coronavirus_isolate_bat_SL_CoVZXC21_:0.00856076):0.02099577,('KJ473814__BtRs_BetaCoV/HuB2013_':0.07851146,(((FJ211860__Recombinant_coronavirus_clone_Bat_SRBD_spike_glycoprotein_gene_:0.0,(KF569996__Rhinolophus_affinis_coronavirus_isolate_LYRa11_:0.06564142,((KC881006__Bat_SARS_like_coronavirus_Rs3367_:0.00248493,KY417144__Bat_SARS_like_coronavirus_isolate_Rs4084_:0.03577576):0.07335188,(AY390556__SARS_coronavirus_GZ02_[&Organism="SARS coronavirus GZ02","Genetic Code"="Standard",Taxonomy="Viruses; Riboviria; Nidovirales; Cornidovirineae; Coronaviridae; Orthocoronavirinae; Betacoronavirus; Sarbecovirus"]:0.02271181,(KY417146__Bat_SARS_like_coronavirus_isolate_Rs4231_:0.03297836,KT444582__SARS_like_coronavirus_WIV16_:0.00406084):0.00315942):0.0158802):0.0468353):0.19154408):0.05707988,(DQ084199__bat_SARS_coronavirus_HKU3_2_:0.00160067,FJ211859__Recombinant_coronavirus_clone_Bat_SARS_CoV_:0.0):0.0):0.01813947,(DQ412043__Bat_SARS_coronavirus_Rm1_:0.02484002,(DQ071615__Bat_SARS_coronavirus_Rp3_:0.00837703,((KY417148__Bat_SARS_like_coronavirus_isolate_Rs4247_:0.00236359,'MK211375__Coronavirus_BtRs_BetaCoV/YN2018A_':0.00244283):0.00655031,('MK211378__Coronavirus_BtRs_BetaCoV/YN2018D_':0.07232072,KY417142__Bat_SARS_like_coronavirus_isolate_As6526_:0.0022262):0.00331214):0.0106398):0.00250994):0.01025225):0.04435326):0.21620842):0.12974973):0.10492686); tree bootstrap_5 = [&U] (MN908947__Wuhan_seafood_market_pneumonia_virus_isolate_Wuhan_Hu_1_SARS_CoV_2_:0.0035953,MN996532__Bat_coronavirus_RaTG13_[&Organism="Bat coronavirus RaTG13","Genetic Code"="Standard",Taxonomy="Viruses; Riboviria; Nidovirales; Cornidovirineae; Coronaviridae; unclassified Coronaviridae"]:0.02054831,(MT084071__Pangolin_coronavirus_isolate_MP789_[&"# Nucleotide Sequences With Mates"=0,Organism="Pangolin coronavirus",Description="Pangolin coronavirus isolate MP789 genomic sequence",Modified=Mon Mar 16 16:48:31 ECT 2020,"Genetic Code"="Standard",Taxonomy="Viruses; Riboviria; Nidovirales; Cornidovirineae; Coronaviridae; Orthocoronavirinae; Betacoronavirus; unclassified Betacoronavirus","Mean Coverage"=1.99039647870886,Topology="linear","Alignment method"="MAFFT Alignment",Created=Mon Mar 09 08:59:37 ECT 2020,URN="urn:local:.:caf-bnocubz","Free end gaps"=true,"Ref Seq Name"="","Molecule Type"="AA"]:0.0289291,((MG772933__Bat_SARS_like_coronavirus_isolate_bat_SL_CoVZC45_:0.00176334,MG772934__Bat_SARS_like_coronavirus_isolate_bat_SL_CoVZXC21_:0.01578025):0.08515848,((KF569996__Rhinolophus_affinis_coronavirus_isolate_LYRa11_:0.07907077,((KY417144__Bat_SARS_like_coronavirus_isolate_Rs4084_:0.02680524,KC881006__Bat_SARS_like_coronavirus_Rs3367_:0.000720):0.05214259,(AY390556__SARS_coronavirus_GZ02_[&Organism="SARS coronavirus GZ02","Genetic Code"="Standard",Taxonomy="Viruses; Riboviria; Nidovirales; Cornidovirineae; Coronaviridae; Orthocoronavirinae; Betacoronavirus; Sarbecovirus"]:0.0198192,(KY417146__Bat_SARS_like_coronavirus_isolate_Rs4231_:0.02898067,KT444582__SARS_like_coronavirus_WIV16_:0.00453249):0.00874908):0.02411786):0.03959481):0.09109522,(FJ211860__Recombinant_coronavirus_clone_Bat_SRBD_spike_glycoprotein_gene_:0.0023344,((FJ211859__Recombinant_coronavirus_clone_Bat_SARS_CoV_:0.0,DQ084199__bat_SARS_coronavirus_HKU3_2_:0.0):0.000728,((KY417142__Bat_SARS_like_coronavirus_isolate_As6526_:0.00859382,('MK211375__Coronavirus_BtRs_BetaCoV/YN2018A_':0.00178356,(KY417148__Bat_SARS_like_coronavirus_isolate_Rs4247_:0.0,('MK211378__Coronavirus_BtRs_BetaCoV/YN2018D_':0.04478138,'KJ473814__BtRs_BetaCoV/HuB2013_':0.15530387):0.0414242):0.01221643):0.00487958):0.01445129,(DQ071615__Bat_SARS_coronavirus_Rp3_:0.00868307,DQ412043__Bat_SARS_coronavirus_Rm1_:0.03262801):0.00653795):0.02889356):0.03882556):0.14001577):0.19483645):0.08276383):0.13442943); tree bootstrap_6 = [&U] (MN996532__Bat_coronavirus_RaTG13_[&Organism="Bat coronavirus RaTG13","Genetic Code"="Standard",Taxonomy="Viruses; Riboviria; Nidovirales; Cornidovirineae; Coronaviridae; unclassified Coronaviridae"]:0.02653866,MN908947__Wuhan_seafood_market_pneumonia_virus_isolate_Wuhan_Hu_1_SARS_CoV_2_:0.00509534,((MT084071__Pangolin_coronavirus_isolate_MP789_[&"# Nucleotide Sequences With Mates"=0,Organism="Pangolin coronavirus",Description="Pangolin coronavirus isolate MP789 genomic sequence",Modified=Mon Mar 16 16:48:31 ECT 2020,"Genetic Code"="Standard",Taxonomy="Viruses; Riboviria; Nidovirales; Cornidovirineae; Coronaviridae; Orthocoronavirinae; Betacoronavirus; unclassified Betacoronavirus","Mean Coverage"=1.99039647870886,Topology="linear","Alignment method"="MAFFT Alignment",Created=Mon Mar 09 08:59:37 ECT 2020,URN="urn:local:.:caf-bnocubz","Free end gaps"=true,"Ref Seq Name"="","Molecule Type"="AA"]:0.01217264,(MG772934__Bat_SARS_like_coronavirus_isolate_bat_SL_CoVZXC21_:0.00970348,MG772933__Bat_SARS_like_coronavirus_isolate_bat_SL_CoVZC45_:0.00979613):0.14638635):0.07093839,((KF569996__Rhinolophus_affinis_coronavirus_isolate_LYRa11_:0.05188786,((KY417144__Bat_SARS_like_coronavirus_isolate_Rs4084_:0.03747085,KC881006__Bat_SARS_like_coronavirus_Rs3367_:0.0):0.05453012,(KT444582__SARS_like_coronavirus_WIV16_:0.00141006,(KY417146__Bat_SARS_like_coronavirus_isolate_Rs4231_:0.0416044,AY390556__SARS_coronavirus_GZ02_[&Organism="SARS coronavirus GZ02","Genetic Code"="Standard",Taxonomy="Viruses; Riboviria; Nidovirales; Cornidovirineae; Coronaviridae; Orthocoronavirinae; Betacoronavirus; Sarbecovirus"]:0.02110173):0.000146):0.02882856):0.06463936):0.08161556,(FJ211860__Recombinant_coronavirus_clone_Bat_SRBD_spike_glycoprotein_gene_:0.000897,(FJ211859__Recombinant_coronavirus_clone_Bat_SARS_CoV_:0.0,(DQ084199__bat_SARS_coronavirus_HKU3_2_:0.00341242,((KY417148__Bat_SARS_like_coronavirus_isolate_Rs4247_:0.00642359,('MK211375__Coronavirus_BtRs_BetaCoV/YN2018A_':0.00275853,(KY417142__Bat_SARS_like_coronavirus_isolate_As6526_:0.00350194,'MK211378__Coronavirus_BtRs_BetaCoV/YN2018D_':0.06996802):0.01368329):0.00279133):0.01340887,('KJ473814__BtRs_BetaCoV/HuB2013_':0.09774575,(DQ071615__Bat_SARS_coronavirus_Rp3_:0.01788634,DQ412043__Bat_SARS_coronavirus_Rm1_:0.02787681):0.01206168):0.00292234):0.02549472):0.0):0.05642398):0.10519567):0.23881468):0.05060147); tree bootstrap_7 = [&U] (MN908947__Wuhan_seafood_market_pneumonia_virus_isolate_Wuhan_Hu_1_SARS_CoV_2_:0.00300948,MN996532__Bat_coronavirus_RaTG13_[&Organism="Bat coronavirus RaTG13","Genetic Code"="Standard",Taxonomy="Viruses; Riboviria; Nidovirales; Cornidovirineae; Coronaviridae; unclassified Coronaviridae"]:0.01935656,(MT084071__Pangolin_coronavirus_isolate_MP789_[&"# Nucleotide Sequences With Mates"=0,Organism="Pangolin coronavirus",Description="Pangolin coronavirus isolate MP789 genomic sequence",Modified=Mon Mar 16 16:48:31 ECT 2020,"Genetic Code"="Standard",Taxonomy="Viruses; Riboviria; Nidovirales; Cornidovirineae; Coronaviridae; Orthocoronavirinae; Betacoronavirus; unclassified Betacoronavirus","Mean Coverage"=1.99039647870886,Topology="linear","Alignment method"="MAFFT Alignment",Created=Mon Mar 09 08:59:37 ECT 2020,URN="urn:local:.:caf-bnocubz","Free end gaps"=true,"Ref Seq Name"="","Molecule Type"="AA"]:0.02653159,((MG772933__Bat_SARS_like_coronavirus_isolate_bat_SL_CoVZC45_:0.0017019,MG772934__Bat_SARS_like_coronavirus_isolate_bat_SL_CoVZXC21_:0.00892444):0.11337281,((KF569996__Rhinolophus_affinis_coronavirus_isolate_LYRa11_:0.07764107,((KY417144__Bat_SARS_like_coronavirus_isolate_Rs4084_:0.03492182,KC881006__Bat_SARS_like_coronavirus_Rs3367_:0.0):0.05908277,(AY390556__SARS_coronavirus_GZ02_[&Organism="SARS coronavirus GZ02","Genetic Code"="Standard",Taxonomy="Viruses; Riboviria; Nidovirales; Cornidovirineae; Coronaviridae; Orthocoronavirinae; Betacoronavirus; Sarbecovirus"]:0.01958009,(KY417146__Bat_SARS_like_coronavirus_isolate_Rs4231_:0.04137839,KT444582__SARS_like_coronavirus_WIV16_:0.00359734):0.00258505):0.03165493):0.04087324):0.12663488,(FJ211860__Recombinant_coronavirus_clone_Bat_SRBD_spike_glycoprotein_gene_:0.00126862,((FJ211859__Recombinant_coronavirus_clone_Bat_SARS_CoV_:0.0,DQ084199__bat_SARS_coronavirus_HKU3_2_:0.0):0.0,(('KJ473814__BtRs_BetaCoV/HuB2013_':0.15022904,(DQ071615__Bat_SARS_coronavirus_Rp3_:0.02356908,DQ412043__Bat_SARS_coronavirus_Rm1_:0.0243699):0.01084493):0.00135886,((KY417142__Bat_SARS_like_coronavirus_isolate_As6526_:0.01437924,'MK211375__Coronavirus_BtRs_BetaCoV/YN2018A_':0.000830):0.00659068,(KY417148__Bat_SARS_like_coronavirus_isolate_Rs4247_:0.0,'MK211378__Coronavirus_BtRs_BetaCoV/YN2018D_':0.08435386):0.00487303):0.01771507):0.03739001):0.06756922):0.11446596):0.22267956):0.08379083):0.09829544); tree bootstrap_8 = [&U] (MN908947__Wuhan_seafood_market_pneumonia_virus_isolate_Wuhan_Hu_1_SARS_CoV_2_:0.00711396,MN996532__Bat_coronavirus_RaTG13_[&Organism="Bat coronavirus RaTG13","Genetic Code"="Standard",Taxonomy="Viruses; Riboviria; Nidovirales; Cornidovirineae; Coronaviridae; unclassified Coronaviridae"]:0.01710498,(MT084071__Pangolin_coronavirus_isolate_MP789_[&"# Nucleotide Sequences With Mates"=0,Organism="Pangolin coronavirus",Description="Pangolin coronavirus isolate MP789 genomic sequence",Modified=Mon Mar 16 16:48:31 ECT 2020,"Genetic Code"="Standard",Taxonomy="Viruses; Riboviria; Nidovirales; Cornidovirineae; Coronaviridae; Orthocoronavirinae; Betacoronavirus; unclassified Betacoronavirus","Mean Coverage"=1.99039647870886,Topology="linear","Alignment method"="MAFFT Alignment",Created=Mon Mar 09 08:59:37 ECT 2020,URN="urn:local:.:caf-bnocubz","Free end gaps"=true,"Ref Seq Name"="","Molecule Type"="AA"]:0.01423893,((MG772933__Bat_SARS_like_coronavirus_isolate_bat_SL_CoVZC45_:0.00685942,MG772934__Bat_SARS_like_coronavirus_isolate_bat_SL_CoVZXC21_:0.00815982):0.02057293,('KJ473814__BtRs_BetaCoV/HuB2013_':0.06614618,(DQ412043__Bat_SARS_coronavirus_Rm1_:0.01063036,((FJ211859__Recombinant_coronavirus_clone_Bat_SARS_CoV_:0.0,(DQ084199__bat_SARS_coronavirus_HKU3_2_:0.0,(FJ211860__Recombinant_coronavirus_clone_Bat_SRBD_spike_glycoprotein_gene_:0.000790,(KF569996__Rhinolophus_affinis_coronavirus_isolate_LYRa11_:0.06680822,(AY390556__SARS_coronavirus_GZ02_[&Organism="SARS coronavirus GZ02","Genetic Code"="Standard",Taxonomy="Viruses; Riboviria; Nidovirales; Cornidovirineae; Coronaviridae; Orthocoronavirinae; Betacoronavirus; Sarbecovirus"]:0.02352205,(KY417146__Bat_SARS_like_coronavirus_isolate_Rs4231_:0.03130237,(KT444582__SARS_like_coronavirus_WIV16_:0.00182684,(KY417144__Bat_SARS_like_coronavirus_isolate_Rs4084_:0.03002041,KC881006__Bat_SARS_like_coronavirus_Rs3367_:0.0):0.07252582):0.00648189):0.00176505):0.05159155):0.15600113):0.04857978):0.0):0.02552446,(DQ071615__Bat_SARS_coronavirus_Rp3_:0.0104612,(KY417148__Bat_SARS_like_coronavirus_isolate_Rs4247_:0.0,('MK211375__Coronavirus_BtRs_BetaCoV/YN2018A_':0.000932,('MK211378__Coronavirus_BtRs_BetaCoV/YN2018D_':0.07789406,KY417142__Bat_SARS_like_coronavirus_isolate_As6526_:0.0064009):0.00475956):0.00158402):0.0117639):0.00454023):0.01777057):0.04627354):0.19326185):0.12869337):0.1089303); tree bootstrap_9 = [&U] (MN996532__Bat_coronavirus_RaTG13_[&Organism="Bat coronavirus RaTG13","Genetic Code"="Standard",Taxonomy="Viruses; Riboviria; Nidovirales; Cornidovirineae; Coronaviridae; unclassified Coronaviridae"]:0.02065533,MN908947__Wuhan_seafood_market_pneumonia_virus_isolate_Wuhan_Hu_1_SARS_CoV_2_:0.00630845,(MT084071__Pangolin_coronavirus_isolate_MP789_[&"# Nucleotide Sequences With Mates"=0,Organism="Pangolin coronavirus",Description="Pangolin coronavirus isolate MP789 genomic sequence",Modified=Mon Mar 16 16:48:31 ECT 2020,"Genetic Code"="Standard",Taxonomy="Viruses; Riboviria; Nidovirales; Cornidovirineae; Coronaviridae; Orthocoronavirinae; Betacoronavirus; unclassified Betacoronavirus","Mean Coverage"=1.99039647870886,Topology="linear","Alignment method"="MAFFT Alignment",Created=Mon Mar 09 08:59:37 ECT 2020,URN="urn:local:.:caf-bnocubz","Free end gaps"=true,"Ref Seq Name"="","Molecule Type"="AA"]:0.02440954,((MG772934__Bat_SARS_like_coronavirus_isolate_bat_SL_CoVZXC21_:0.01429938,MG772933__Bat_SARS_like_coronavirus_isolate_bat_SL_CoVZC45_:0.00333585):0.01941145,(((FJ211860__Recombinant_coronavirus_clone_Bat_SRBD_spike_glycoprotein_gene_:0.0,(KF569996__Rhinolophus_affinis_coronavirus_isolate_LYRa11_:0.06434527,((KY417144__Bat_SARS_like_coronavirus_isolate_Rs4084_:0.04254898,KC881006__Bat_SARS_like_coronavirus_Rs3367_:0.0):0.04961473,(KT444582__SARS_like_coronavirus_WIV16_:0.0,(KY417146__Bat_SARS_like_coronavirus_isolate_Rs4231_:0.04056614,AY390556__SARS_coronavirus_GZ02_[&Organism="SARS coronavirus GZ02","Genetic Code"="Standard",Taxonomy="Viruses; Riboviria; Nidovirales; Cornidovirineae; Coronaviridae; Orthocoronavirinae; Betacoronavirus; Sarbecovirus"]:0.02061542):0.00829138):0.02683954):0.04667074):0.22339605):0.05331603,(DQ084199__bat_SARS_coronavirus_HKU3_2_:0.000879,FJ211859__Recombinant_coronavirus_clone_Bat_SARS_CoV_:0.0):0.00210993):0.0090072,((KY417142__Bat_SARS_like_coronavirus_isolate_As6526_:0.00899675,('MK211375__Coronavirus_BtRs_BetaCoV/YN2018A_':0.00132081,KY417148__Bat_SARS_like_coronavirus_isolate_Rs4247_:0.00393134):0.00597145):0.0100564,(DQ071615__Bat_SARS_coronavirus_Rp3_:0.00729404,(DQ412043__Bat_SARS_coronavirus_Rm1_:0.02223479,('MK211378__Coronavirus_BtRs_BetaCoV/YN2018D_':0.04336216,'KJ473814__BtRs_BetaCoV/HuB2013_':0.0943395):0.03586099):0.01822428):0.00426519):0.01547519):0.25401334):0.15591053):0.12448174); tree bootstrap_10 = [&U] (MN996532__Bat_coronavirus_RaTG13_[&Organism="Bat coronavirus RaTG13","Genetic Code"="Standard",Taxonomy="Viruses; Riboviria; Nidovirales; Cornidovirineae; Coronaviridae; unclassified Coronaviridae"]:0.02172388,MN908947__Wuhan_seafood_market_pneumonia_virus_isolate_Wuhan_Hu_1_SARS_CoV_2_:0.00651311,(MT084071__Pangolin_coronavirus_isolate_MP789_[&"# Nucleotide Sequences With Mates"=0,Organism="Pangolin coronavirus",Description="Pangolin coronavirus isolate MP789 genomic sequence",Modified=Mon Mar 16 16:48:31 ECT 2020,"Genetic Code"="Standard",Taxonomy="Viruses; Riboviria; Nidovirales; Cornidovirineae; Coronaviridae; Orthocoronavirinae; Betacoronavirus; unclassified Betacoronavirus","Mean Coverage"=1.99039647870886,Topology="linear","Alignment method"="MAFFT Alignment",Created=Mon Mar 09 08:59:37 ECT 2020,URN="urn:local:.:caf-bnocubz","Free end gaps"=true,"Ref Seq Name"="","Molecule Type"="AA"]:0.01058874,((MG772934__Bat_SARS_like_coronavirus_isolate_bat_SL_CoVZXC21_:0.0099172,MG772933__Bat_SARS_like_coronavirus_isolate_bat_SL_CoVZC45_:0.00451567):0.03106388,('KJ473814__BtRs_BetaCoV/HuB2013_':0.05902035,(DQ412043__Bat_SARS_coronavirus_Rm1_:0.01363138,(((FJ211860__Recombinant_coronavirus_clone_Bat_SRBD_spike_glycoprotein_gene_:0.0,(KF569996__Rhinolophus_affinis_coronavirus_isolate_LYRa11_:0.06107096,((KC881006__Bat_SARS_like_coronavirus_Rs3367_:0.0,KY417144__Bat_SARS_like_coronavirus_isolate_Rs4084_:0.02947576):0.04020798,(AY390556__SARS_coronavirus_GZ02_[&Organism="SARS coronavirus GZ02","Genetic Code"="Standard",Taxonomy="Viruses; Riboviria; Nidovirales; Cornidovirineae; Coronaviridae; Orthocoronavirinae; Betacoronavirus; Sarbecovirus"]:0.02342921,(KY417146__Bat_SARS_like_coronavirus_isolate_Rs4231_:0.03256676,KT444582__SARS_like_coronavirus_WIV16_:0.0):0.00123902):0.02136657):0.03582298):0.18166651):0.05699004,(DQ084199__bat_SARS_coronavirus_HKU3_2_:0.0,FJ211859__Recombinant_coronavirus_clone_Bat_SARS_CoV_:0.0):0.0):0.0221411,(DQ071615__Bat_SARS_coronavirus_Rp3_:0.01104824,(KY417148__Bat_SARS_like_coronavirus_isolate_Rs4247_:0.00235573,('MK211375__Coronavirus_BtRs_BetaCoV/YN2018A_':0.0,('MK211378__Coronavirus_BtRs_BetaCoV/YN2018D_':0.0686453,KY417142__Bat_SARS_like_coronavirus_isolate_As6526_:0.00610702):0.01144257):0.00689303):0.01294931):0.00467654):0.01906063):0.05521932):0.18943601):0.13148981):0.12384145); tree bootstrap_11 = [&U] (MN908947__Wuhan_seafood_market_pneumonia_virus_isolate_Wuhan_Hu_1_SARS_CoV_2_:0.00708712,MN996532__Bat_coronavirus_RaTG13_[&Organism="Bat coronavirus RaTG13","Genetic Code"="Standard",Taxonomy="Viruses; Riboviria; Nidovirales; Cornidovirineae; Coronaviridae; unclassified Coronaviridae"]:0.01424006,(MT084071__Pangolin_coronavirus_isolate_MP789_[&"# Nucleotide Sequences With Mates"=0,Organism="Pangolin coronavirus",Description="Pangolin coronavirus isolate MP789 genomic sequence",Modified=Mon Mar 16 16:48:31 ECT 2020,"Genetic Code"="Standard",Taxonomy="Viruses; Riboviria; Nidovirales; Cornidovirineae; Coronaviridae; Orthocoronavirinae; Betacoronavirus; unclassified Betacoronavirus","Mean Coverage"=1.99039647870886,Topology="linear","Alignment method"="MAFFT Alignment",Created=Mon Mar 09 08:59:37 ECT 2020,URN="urn:local:.:caf-bnocubz","Free end gaps"=true,"Ref Seq Name"="","Molecule Type"="AA"]:0.02368011,((MG772934__Bat_SARS_like_coronavirus_isolate_bat_SL_CoVZXC21_:0.01118366,MG772933__Bat_SARS_like_coronavirus_isolate_bat_SL_CoVZC45_:0.00247729):0.09226698,((KF569996__Rhinolophus_affinis_coronavirus_isolate_LYRa11_:0.07269142,((KC881006__Bat_SARS_like_coronavirus_Rs3367_:0.00240014,KY417144__Bat_SARS_like_coronavirus_isolate_Rs4084_:0.03078244):0.04608513,(AY390556__SARS_coronavirus_GZ02_[&Organism="SARS coronavirus GZ02","Genetic Code"="Standard",Taxonomy="Viruses; Riboviria; Nidovirales; Cornidovirineae; Coronaviridae; Orthocoronavirinae; Betacoronavirus; Sarbecovirus"]:0.02170857,(KY417146__Bat_SARS_like_coronavirus_isolate_Rs4231_:0.02848736,KT444582__SARS_like_coronavirus_WIV16_:0.00243521):0.00303182):0.02466239):0.04028468):0.10076752,(FJ211860__Recombinant_coronavirus_clone_Bat_SRBD_spike_glycoprotein_gene_:0.00248028,((FJ211859__Recombinant_coronavirus_clone_Bat_SARS_CoV_:0.0,DQ084199__bat_SARS_coronavirus_HKU3_2_:0.0):0.000864,((DQ412043__Bat_SARS_coronavirus_Rm1_:0.02251265,'KJ473814__BtRs_BetaCoV/HuB2013_':0.10400128):0.01027336,(DQ071615__Bat_SARS_coronavirus_Rp3_:0.00981929,(('MK211378__Coronavirus_BtRs_BetaCoV/YN2018D_':0.06539582,KY417142__Bat_SARS_like_coronavirus_isolate_As6526_:0.00381912):0.00597306,(KY417148__Bat_SARS_like_coronavirus_isolate_Rs4247_:0.0030071,'MK211375__Coronavirus_BtRs_BetaCoV/YN2018A_':0.00219749):0.00435287):0.00926729):0.00804303):0.02489295):0.04574148):0.09265045):0.16219217):0.0729992):0.1089726); tree bootstrap_12 = [&U] (MN908947__Wuhan_seafood_market_pneumonia_virus_isolate_Wuhan_Hu_1_SARS_CoV_2_:0.00260269,MN996532__Bat_coronavirus_RaTG13_[&Organism="Bat coronavirus RaTG13","Genetic Code"="Standard",Taxonomy="Viruses; Riboviria; Nidovirales; Cornidovirineae; Coronaviridae; unclassified Coronaviridae"]:0.02483077,(MT084071__Pangolin_coronavirus_isolate_MP789_[&"# Nucleotide Sequences With Mates"=0,Organism="Pangolin coronavirus",Description="Pangolin coronavirus isolate MP789 genomic sequence",Modified=Mon Mar 16 16:48:31 ECT 2020,"Genetic Code"="Standard",Taxonomy="Viruses; Riboviria; Nidovirales; Cornidovirineae; Coronaviridae; Orthocoronavirinae; Betacoronavirus; unclassified Betacoronavirus","Mean Coverage"=1.99039647870886,Topology="linear","Alignment method"="MAFFT Alignment",Created=Mon Mar 09 08:59:37 ECT 2020,URN="urn:local:.:caf-bnocubz","Free end gaps"=true,"Ref Seq Name"="","Molecule Type"="AA"]:0.02670477,((MG772934__Bat_SARS_like_coronavirus_isolate_bat_SL_CoVZXC21_:0.00765603,MG772933__Bat_SARS_like_coronavirus_isolate_bat_SL_CoVZC45_:0.00803844):0.0253012,('KJ473814__BtRs_BetaCoV/HuB2013_':0.06551629,('MK211378__Coronavirus_BtRs_BetaCoV/YN2018D_':0.03554095,(KY417148__Bat_SARS_like_coronavirus_isolate_Rs4247_:0.0,((DQ412043__Bat_SARS_coronavirus_Rm1_:0.03090028,DQ071615__Bat_SARS_coronavirus_Rp3_:0.01044056):0.00990331,(((FJ211860__Recombinant_coronavirus_clone_Bat_SRBD_spike_glycoprotein_gene_:0.0,(KF569996__Rhinolophus_affinis_coronavirus_isolate_LYRa11_:0.0521503,((KC881006__Bat_SARS_like_coronavirus_Rs3367_:0.00435246,KY417144__Bat_SARS_like_coronavirus_isolate_Rs4084_:0.02857591):0.04611214,(AY390556__SARS_coronavirus_GZ02_[&Organism="SARS coronavirus GZ02","Genetic Code"="Standard",Taxonomy="Viruses; Riboviria; Nidovirales; Cornidovirineae; Coronaviridae; Orthocoronavirinae; Betacoronavirus; Sarbecovirus"]:0.01698589,(KY417146__Bat_SARS_like_coronavirus_isolate_Rs4231_:0.03224903,KT444582__SARS_like_coronavirus_WIV16_:0.00797731):0.00805607):0.03157616):0.02906191):0.18675945):0.04972379,(FJ211859__Recombinant_coronavirus_clone_Bat_SARS_CoV_:0.0,DQ084199__bat_SARS_coronavirus_HKU3_2_:0.000821):0.0):0.03355013,('MK211375__Coronavirus_BtRs_BetaCoV/YN2018A_':0.000813,KY417142__Bat_SARS_like_coronavirus_isolate_As6526_:0.0109502):0.00269213):0.00257792):0.00311795):0.03353111):0.0463418):0.17814744):0.12524491):0.10785757); tree bootstrap_13 = [&U] (MN996532__Bat_coronavirus_RaTG13_[&Organism="Bat coronavirus RaTG13","Genetic Code"="Standard",Taxonomy="Viruses; Riboviria; Nidovirales; Cornidovirineae; Coronaviridae; unclassified Coronaviridae"]:0.01870737,MN908947__Wuhan_seafood_market_pneumonia_virus_isolate_Wuhan_Hu_1_SARS_CoV_2_:0.00857831,(MT084071__Pangolin_coronavirus_isolate_MP789_[&"# Nucleotide Sequences With Mates"=0,Organism="Pangolin coronavirus",Description="Pangolin coronavirus isolate MP789 genomic sequence",Modified=Mon Mar 16 16:48:31 ECT 2020,"Genetic Code"="Standard",Taxonomy="Viruses; Riboviria; Nidovirales; Cornidovirineae; Coronaviridae; Orthocoronavirinae; Betacoronavirus; unclassified Betacoronavirus","Mean Coverage"=1.99039647870886,Topology="linear","Alignment method"="MAFFT Alignment",Created=Mon Mar 09 08:59:37 ECT 2020,URN="urn:local:.:caf-bnocubz","Free end gaps"=true,"Ref Seq Name"="","Molecule Type"="AA"]:0.02413855,((MG772934__Bat_SARS_like_coronavirus_isolate_bat_SL_CoVZXC21_:0.01239031,MG772933__Bat_SARS_like_coronavirus_isolate_bat_SL_CoVZC45_:0.00355893):0.02410723,((KF569996__Rhinolophus_affinis_coronavirus_isolate_LYRa11_:0.06532089,((KY417144__Bat_SARS_like_coronavirus_isolate_Rs4084_:0.03160681,KC881006__Bat_SARS_like_coronavirus_Rs3367_:0.00136684):0.0484314,(AY390556__SARS_coronavirus_GZ02_[&Organism="SARS coronavirus GZ02","Genetic Code"="Standard",Taxonomy="Viruses; Riboviria; Nidovirales; Cornidovirineae; Coronaviridae; Orthocoronavirinae; Betacoronavirus; Sarbecovirus"]:0.02133817,(KT444582__SARS_like_coronavirus_WIV16_:0.00176703,KY417146__Bat_SARS_like_coronavirus_isolate_Rs4231_:0.03124979):0.0018682):0.0211847):0.03679722):0.18497864,('KJ473814__BtRs_BetaCoV/HuB2013_':0.08334375,((FJ211860__Recombinant_coronavirus_clone_Bat_SRBD_spike_glycoprotein_gene_:0.04448759,(FJ211859__Recombinant_coronavirus_clone_Bat_SARS_CoV_:0.0,DQ084199__bat_SARS_coronavirus_HKU3_2_:0.0):0.00151122):0.02514155,(DQ412043__Bat_SARS_coronavirus_Rm1_:0.02803067,(DQ071615__Bat_SARS_coronavirus_Rp3_:0.00890744,(KY417142__Bat_SARS_like_coronavirus_isolate_As6526_:0.0035979,('MK211378__Coronavirus_BtRs_BetaCoV/YN2018D_':0.07875024,(KY417148__Bat_SARS_like_coronavirus_isolate_Rs4247_:0.00433032,'MK211375__Coronavirus_BtRs_BetaCoV/YN2018A_':0.00552923):0.00470404):0.000672):0.01028883):0.00707182):0.00407467):0.0475043):0.05199922):0.19562884):0.13807583):0.11755845); tree bootstrap_14 = [&U] (MN908947__Wuhan_seafood_market_pneumonia_virus_isolate_Wuhan_Hu_1_SARS_CoV_2_:0.00620368,MN996532__Bat_coronavirus_RaTG13_[&Organism="Bat coronavirus RaTG13","Genetic Code"="Standard",Taxonomy="Viruses; Riboviria; Nidovirales; Cornidovirineae; Coronaviridae; unclassified Coronaviridae"]:0.01875183,(MT084071__Pangolin_coronavirus_isolate_MP789_[&"# Nucleotide Sequences With Mates"=0,Organism="Pangolin coronavirus",Description="Pangolin coronavirus isolate MP789 genomic sequence",Modified=Mon Mar 16 16:48:31 ECT 2020,"Genetic Code"="Standard",Taxonomy="Viruses; Riboviria; Nidovirales; Cornidovirineae; Coronaviridae; Orthocoronavirinae; Betacoronavirus; unclassified Betacoronavirus","Mean Coverage"=1.99039647870886,Topology="linear","Alignment method"="MAFFT Alignment",Created=Mon Mar 09 08:59:37 ECT 2020,URN="urn:local:.:caf-bnocubz","Free end gaps"=true,"Ref Seq Name"="","Molecule Type"="AA"]:0.01693271,((MG772933__Bat_SARS_like_coronavirus_isolate_bat_SL_CoVZC45_:0.00418004,MG772934__Bat_SARS_like_coronavirus_isolate_bat_SL_CoVZXC21_:0.00878524):0.01427369,('KJ473814__BtRs_BetaCoV/HuB2013_':0.05601565,('MK211378__Coronavirus_BtRs_BetaCoV/YN2018D_':0.04889709,(DQ412043__Bat_SARS_coronavirus_Rm1_:0.01257689,(DQ071615__Bat_SARS_coronavirus_Rp3_:0.01240961,(((FJ211860__Recombinant_coronavirus_clone_Bat_SRBD_spike_glycoprotein_gene_:0.0,(KF569996__Rhinolophus_affinis_coronavirus_isolate_LYRa11_:0.06664095,(AY390556__SARS_coronavirus_GZ02_[&Organism="SARS coronavirus GZ02","Genetic Code"="Standard",Taxonomy="Viruses; Riboviria; Nidovirales; Cornidovirineae; Coronaviridae; Orthocoronavirinae; Betacoronavirus; Sarbecovirus"]:0.01333555,(KY417146__Bat_SARS_like_coronavirus_isolate_Rs4231_:0.04080859,(KT444582__SARS_like_coronavirus_WIV16_:0.00101863,(KY417144__Bat_SARS_like_coronavirus_isolate_Rs4084_:0.03865938,KC881006__Bat_SARS_like_coronavirus_Rs3367_:0.000205):0.06273506):0.0040144):0.00746899):0.04129504):0.17893888):0.04932686,(FJ211859__Recombinant_coronavirus_clone_Bat_SARS_CoV_:0.0,DQ084199__bat_SARS_coronavirus_HKU3_2_:0.0):0.00249346):0.02918637,(KY417142__Bat_SARS_like_coronavirus_isolate_As6526_:0.00860854,('MK211375__Coronavirus_BtRs_BetaCoV/YN2018A_':0.00441107,KY417148__Bat_SARS_like_coronavirus_isolate_Rs4247_:0.00607039):0.00650593):0.00613796):0.00470246):0.01568289):0.02323178):0.03986403):0.22273864):0.13485992):0.10776752); tree bootstrap_15 = [&U] (MN908947__Wuhan_seafood_market_pneumonia_virus_isolate_Wuhan_Hu_1_SARS_CoV_2_:0.00389267,MN996532__Bat_coronavirus_RaTG13_[&Organism="Bat coronavirus RaTG13","Genetic Code"="Standard",Taxonomy="Viruses; Riboviria; Nidovirales; Cornidovirineae; Coronaviridae; unclassified Coronaviridae"]:0.02202498,(MT084071__Pangolin_coronavirus_isolate_MP789_[&"# Nucleotide Sequences With Mates"=0,Organism="Pangolin coronavirus",Description="Pangolin coronavirus isolate MP789 genomic sequence",Modified=Mon Mar 16 16:48:31 ECT 2020,"Genetic Code"="Standard",Taxonomy="Viruses; Riboviria; Nidovirales; Cornidovirineae; Coronaviridae; Orthocoronavirinae; Betacoronavirus; unclassified Betacoronavirus","Mean Coverage"=1.99039647870886,Topology="linear","Alignment method"="MAFFT Alignment",Created=Mon Mar 09 08:59:37 ECT 2020,URN="urn:local:.:caf-bnocubz","Free end gaps"=true,"Ref Seq Name"="","Molecule Type"="AA"]:0.02001605,((MG772934__Bat_SARS_like_coronavirus_isolate_bat_SL_CoVZXC21_:0.00730383,MG772933__Bat_SARS_like_coronavirus_isolate_bat_SL_CoVZC45_:0.0052766):0.10399775,((KF569996__Rhinolophus_affinis_coronavirus_isolate_LYRa11_:0.07566436,((KY417144__Bat_SARS_like_coronavirus_isolate_Rs4084_:0.03786833,KC881006__Bat_SARS_like_coronavirus_Rs3367_:0.00176119):0.07228474,(AY390556__SARS_coronavirus_GZ02_[&Organism="SARS coronavirus GZ02","Genetic Code"="Standard",Taxonomy="Viruses; Riboviria; Nidovirales; Cornidovirineae; Coronaviridae; Orthocoronavirinae; Betacoronavirus; Sarbecovirus"]:0.0191123,(KY417146__Bat_SARS_like_coronavirus_isolate_Rs4231_:0.04180469,KT444582__SARS_like_coronavirus_WIV16_:0.00266189):0.00465947):0.03171406):0.04609458):0.11010405,(FJ211860__Recombinant_coronavirus_clone_Bat_SRBD_spike_glycoprotein_gene_:0.00161881,(FJ211859__Recombinant_coronavirus_clone_Bat_SARS_CoV_:0.0,(DQ084199__bat_SARS_coronavirus_HKU3_2_:0.000883,((DQ412043__Bat_SARS_coronavirus_Rm1_:0.01829987,'KJ473814__BtRs_BetaCoV/HuB2013_':0.13103418):0.01174846,(DQ071615__Bat_SARS_coronavirus_Rp3_:0.02052466,(KY417148__Bat_SARS_like_coronavirus_isolate_Rs4247_:0.00165671,('MK211375__Coronavirus_BtRs_BetaCoV/YN2018A_':0.00283245,('MK211378__Coronavirus_BtRs_BetaCoV/YN2018D_':0.09261332,KY417142__Bat_SARS_like_coronavirus_isolate_As6526_:0.00449294):0.01103649):0.00439876):0.009681):0.00321775):0.01786768):0.0):0.06274676):0.14051018):0.24094933):0.07839418):0.12527389); tree bootstrap_16 = [&U] (MN996532__Bat_coronavirus_RaTG13_[&Organism="Bat coronavirus RaTG13","Genetic Code"="Standard",Taxonomy="Viruses; Riboviria; Nidovirales; Cornidovirineae; Coronaviridae; unclassified Coronaviridae"]:0.01741344,MN908947__Wuhan_seafood_market_pneumonia_virus_isolate_Wuhan_Hu_1_SARS_CoV_2_:0.000993,(MT084071__Pangolin_coronavirus_isolate_MP789_[&"# Nucleotide Sequences With Mates"=0,Organism="Pangolin coronavirus",Description="Pangolin coronavirus isolate MP789 genomic sequence",Modified=Mon Mar 16 16:48:31 ECT 2020,"Genetic Code"="Standard",Taxonomy="Viruses; Riboviria; Nidovirales; Cornidovirineae; Coronaviridae; Orthocoronavirinae; Betacoronavirus; unclassified Betacoronavirus","Mean Coverage"=1.99039647870886,Topology="linear","Alignment method"="MAFFT Alignment",Created=Mon Mar 09 08:59:37 ECT 2020,URN="urn:local:.:caf-bnocubz","Free end gaps"=true,"Ref Seq Name"="","Molecule Type"="AA"]:0.01548661,((MG772934__Bat_SARS_like_coronavirus_isolate_bat_SL_CoVZXC21_:0.00701336,MG772933__Bat_SARS_like_coronavirus_isolate_bat_SL_CoVZC45_:0.00386118):0.01341834,('KJ473814__BtRs_BetaCoV/HuB2013_':0.06100697,('MK211378__Coronavirus_BtRs_BetaCoV/YN2018D_':0.04668237,((KY417148__Bat_SARS_like_coronavirus_isolate_Rs4247_:0.0,('MK211375__Coronavirus_BtRs_BetaCoV/YN2018A_':0.0035757,KY417142__Bat_SARS_like_coronavirus_isolate_As6526_:0.01270858):0.0053584):0.00409682,(((FJ211860__Recombinant_coronavirus_clone_Bat_SRBD_spike_glycoprotein_gene_:0.00161462,(KF569996__Rhinolophus_affinis_coronavirus_isolate_LYRa11_:0.0498974,((AY390556__SARS_coronavirus_GZ02_[&Organism="SARS coronavirus GZ02","Genetic Code"="Standard",Taxonomy="Viruses; Riboviria; Nidovirales; Cornidovirineae; Coronaviridae; Orthocoronavirinae; Betacoronavirus; Sarbecovirus"]:0.01995353,(KY417146__Bat_SARS_like_coronavirus_isolate_Rs4231_:0.03432298,KT444582__SARS_like_coronavirus_WIV16_:0.00255322):0.000686):0.04003258,(KC881006__Bat_SARS_like_coronavirus_Rs3367_:0.00142592,KY417144__Bat_SARS_like_coronavirus_isolate_Rs4084_:0.03328807):0.04671134):0.04470285):0.23059066):0.05101112,(DQ084199__bat_SARS_coronavirus_HKU3_2_:0.000880,FJ211859__Recombinant_coronavirus_clone_Bat_SARS_CoV_:0.0):0.0):0.0361921,(DQ071615__Bat_SARS_coronavirus_Rp3_:0.00421569,DQ412043__Bat_SARS_coronavirus_Rm1_:0.02637732):0.01276361):0.00585916):0.03634599):0.06582523):0.26219762):0.12689259):0.12345648); tree bootstrap_17 = [&U] (MN908947__Wuhan_seafood_market_pneumonia_virus_isolate_Wuhan_Hu_1_SARS_CoV_2_:0.00504977,MN996532__Bat_coronavirus_RaTG13_[&Organism="Bat coronavirus RaTG13","Genetic Code"="Standard",Taxonomy="Viruses; Riboviria; Nidovirales; Cornidovirineae; Coronaviridae; unclassified Coronaviridae"]:0.02236027,(MT084071__Pangolin_coronavirus_isolate_MP789_[&"# Nucleotide Sequences With Mates"=0,Organism="Pangolin coronavirus",Description="Pangolin coronavirus isolate MP789 genomic sequence",Modified=Mon Mar 16 16:48:31 ECT 2020,"Genetic Code"="Standard",Taxonomy="Viruses; Riboviria; Nidovirales; Cornidovirineae; Coronaviridae; Orthocoronavirinae; Betacoronavirus; unclassified Betacoronavirus","Mean Coverage"=1.99039647870886,Topology="linear","Alignment method"="MAFFT Alignment",Created=Mon Mar 09 08:59:37 ECT 2020,URN="urn:local:.:caf-bnocubz","Free end gaps"=true,"Ref Seq Name"="","Molecule Type"="AA"]:0.02338885,((MG772934__Bat_SARS_like_coronavirus_isolate_bat_SL_CoVZXC21_:0.00532211,MG772933__Bat_SARS_like_coronavirus_isolate_bat_SL_CoVZC45_:0.00330416):0.06741979,((KF569996__Rhinolophus_affinis_coronavirus_isolate_LYRa11_:0.05274779,((KC881006__Bat_SARS_like_coronavirus_Rs3367_:0.000387,KY417144__Bat_SARS_like_coronavirus_isolate_Rs4084_:0.02699043):0.07497864,(KT444582__SARS_like_coronavirus_WIV16_:0.00275671,(AY390556__SARS_coronavirus_GZ02_[&Organism="SARS coronavirus GZ02","Genetic Code"="Standard",Taxonomy="Viruses; Riboviria; Nidovirales; Cornidovirineae; Coronaviridae; Orthocoronavirinae; Betacoronavirus; Sarbecovirus"]:0.02034523,KY417146__Bat_SARS_like_coronavirus_isolate_Rs4231_:0.02811925):0.00484572):0.03210283):0.0535812):0.12433754,(FJ211860__Recombinant_coronavirus_clone_Bat_SRBD_spike_glycoprotein_gene_:0.00314825,((FJ211859__Recombinant_coronavirus_clone_Bat_SARS_CoV_:0.0,DQ084199__bat_SARS_coronavirus_HKU3_2_:0.000883):0.0,((DQ071615__Bat_SARS_coronavirus_Rp3_:0.01291333,(KY417148__Bat_SARS_like_coronavirus_isolate_Rs4247_:0.000636,('MK211375__Coronavirus_BtRs_BetaCoV/YN2018A_':0.0,(KY417142__Bat_SARS_like_coronavirus_isolate_As6526_:0.00145419,'MK211378__Coronavirus_BtRs_BetaCoV/YN2018D_':0.09904245):0.0056402):0.00549511):0.01310993):0.00368999,(DQ412043__Bat_SARS_coronavirus_Rm1_:0.01869491,'KJ473814__BtRs_BetaCoV/HuB2013_':0.12472643):0.00327893):0.02640048):0.03600272):0.11990376):0.22169322):0.0706788):0.13464323); tree bootstrap_18 = [&U] (MN908947__Wuhan_seafood_market_pneumonia_virus_isolate_Wuhan_Hu_1_SARS_CoV_2_:0.00375132,MN996532__Bat_coronavirus_RaTG13_[&Organism="Bat coronavirus RaTG13","Genetic Code"="Standard",Taxonomy="Viruses; Riboviria; Nidovirales; Cornidovirineae; Coronaviridae; unclassified Coronaviridae"]:0.01976085,((MT084071__Pangolin_coronavirus_isolate_MP789_[&"# Nucleotide Sequences With Mates"=0,Organism="Pangolin coronavirus",Description="Pangolin coronavirus isolate MP789 genomic sequence",Modified=Mon Mar 16 16:48:31 ECT 2020,"Genetic Code"="Standard",Taxonomy="Viruses; Riboviria; Nidovirales; Cornidovirineae; Coronaviridae; Orthocoronavirinae; Betacoronavirus; unclassified Betacoronavirus","Mean Coverage"=1.99039647870886,Topology="linear","Alignment method"="MAFFT Alignment",Created=Mon Mar 09 08:59:37 ECT 2020,URN="urn:local:.:caf-bnocubz","Free end gaps"=true,"Ref Seq Name"="","Molecule Type"="AA"]:0.01339807,(MG772934__Bat_SARS_like_coronavirus_isolate_bat_SL_CoVZXC21_:0.0107258,MG772933__Bat_SARS_like_coronavirus_isolate_bat_SL_CoVZC45_:0.00648513):0.18405233):0.07223871,((KF569996__Rhinolophus_affinis_coronavirus_isolate_LYRa11_:0.06547075,((KC881006__Bat_SARS_like_coronavirus_Rs3367_:0.00128197,KY417144__Bat_SARS_like_coronavirus_isolate_Rs4084_:0.03771722):0.06253104,(AY390556__SARS_coronavirus_GZ02_[&Organism="SARS coronavirus GZ02","Genetic Code"="Standard",Taxonomy="Viruses; Riboviria; Nidovirales; Cornidovirineae; Coronaviridae; Orthocoronavirinae; Betacoronavirus; Sarbecovirus"]:0.02271293,(KY417146__Bat_SARS_like_coronavirus_isolate_Rs4231_:0.03653703,KT444582__SARS_like_coronavirus_WIV16_:0.00122672):0.00229824):0.03870095):0.03734559):0.09155747,(FJ211860__Recombinant_coronavirus_clone_Bat_SRBD_spike_glycoprotein_gene_:0.0,((FJ211859__Recombinant_coronavirus_clone_Bat_SARS_CoV_:0.0,DQ084199__bat_SARS_coronavirus_HKU3_2_:0.000865):0.0,((DQ071615__Bat_SARS_coronavirus_Rp3_:0.00789392,DQ412043__Bat_SARS_coronavirus_Rm1_:0.03072051):0.00755035,((KY417142__Bat_SARS_like_coronavirus_isolate_As6526_:0.01341815,'MK211375__Coronavirus_BtRs_BetaCoV/YN2018A_':0.00440055):0.00502107,(KY417148__Bat_SARS_like_coronavirus_isolate_Rs4247_:0.0,('MK211378__Coronavirus_BtRs_BetaCoV/YN2018D_':0.04739142,'KJ473814__BtRs_BetaCoV/HuB2013_':0.10095076):0.03396312):0.00102283):0.00603623):0.02526329):0.06980367):0.10816611):0.23675841):0.05802391); tree bootstrap_19 = [&U] (MN996532__Bat_coronavirus_RaTG13_[&Organism="Bat coronavirus RaTG13","Genetic Code"="Standard",Taxonomy="Viruses; Riboviria; Nidovirales; Cornidovirineae; Coronaviridae; unclassified Coronaviridae"]:0.01959678,MN908947__Wuhan_seafood_market_pneumonia_virus_isolate_Wuhan_Hu_1_SARS_CoV_2_:0.00575627,(MT084071__Pangolin_coronavirus_isolate_MP789_[&"# Nucleotide Sequences With Mates"=0,Organism="Pangolin coronavirus",Description="Pangolin coronavirus isolate MP789 genomic sequence",Modified=Mon Mar 16 16:48:31 ECT 2020,"Genetic Code"="Standard",Taxonomy="Viruses; Riboviria; Nidovirales; Cornidovirineae; Coronaviridae; Orthocoronavirinae; Betacoronavirus; unclassified Betacoronavirus","Mean Coverage"=1.99039647870886,Topology="linear","Alignment method"="MAFFT Alignment",Created=Mon Mar 09 08:59:37 ECT 2020,URN="urn:local:.:caf-bnocubz","Free end gaps"=true,"Ref Seq Name"="","Molecule Type"="AA"]:0.00961335,((MG772933__Bat_SARS_like_coronavirus_isolate_bat_SL_CoVZC45_:0.00840589,MG772934__Bat_SARS_like_coronavirus_isolate_bat_SL_CoVZXC21_:0.00625124):0.0151511,('KJ473814__BtRs_BetaCoV/HuB2013_':0.05600413,(((FJ211860__Recombinant_coronavirus_clone_Bat_SRBD_spike_glycoprotein_gene_:0.00286239,(KF569996__Rhinolophus_affinis_coronavirus_isolate_LYRa11_:0.05786114,((KC881006__Bat_SARS_like_coronavirus_Rs3367_:0.00656619,KY417144__Bat_SARS_like_coronavirus_isolate_Rs4084_:0.03159143):0.0557152,(AY390556__SARS_coronavirus_GZ02_[&Organism="SARS coronavirus GZ02","Genetic Code"="Standard",Taxonomy="Viruses; Riboviria; Nidovirales; Cornidovirineae; Coronaviridae; Orthocoronavirinae; Betacoronavirus; Sarbecovirus"]:0.01794587,(KT444582__SARS_like_coronavirus_WIV16_:0.00467404,KY417146__Bat_SARS_like_coronavirus_isolate_Rs4231_:0.03383066):0.00109315):0.02857335):0.05900299):0.20421969):0.05995308,(FJ211859__Recombinant_coronavirus_clone_Bat_SARS_CoV_:0.0,DQ084199__bat_SARS_coronavirus_HKU3_2_:0.0):0.0):0.01699967,(DQ412043__Bat_SARS_coronavirus_Rm1_:0.01970824,(DQ071615__Bat_SARS_coronavirus_Rp3_:0.0036577,((KY417148__Bat_SARS_like_coronavirus_isolate_Rs4247_:0.0,'MK211375__Coronavirus_BtRs_BetaCoV/YN2018A_':0.00405218):0.00581084,('MK211378__Coronavirus_BtRs_BetaCoV/YN2018D_':0.06074226,KY417142__Bat_SARS_like_coronavirus_isolate_As6526_:0.00504012):0.00210582):0.0089846):0.00517931):0.00894916):0.06198981):0.21168459):0.14315217):0.11235978); tree bootstrap_20 = [&U] (MN908947__Wuhan_seafood_market_pneumonia_virus_isolate_Wuhan_Hu_1_SARS_CoV_2_:0.00414221,MN996532__Bat_coronavirus_RaTG13_[&Organism="Bat coronavirus RaTG13","Genetic Code"="Standard",Taxonomy="Viruses; Riboviria; Nidovirales; Cornidovirineae; Coronaviridae; unclassified Coronaviridae"]:0.02013069,(MT084071__Pangolin_coronavirus_isolate_MP789_[&"# Nucleotide Sequences With Mates"=0,Organism="Pangolin coronavirus",Description="Pangolin coronavirus isolate MP789 genomic sequence",Modified=Mon Mar 16 16:48:31 ECT 2020,"Genetic Code"="Standard",Taxonomy="Viruses; Riboviria; Nidovirales; Cornidovirineae; Coronaviridae; Orthocoronavirinae; Betacoronavirus; unclassified Betacoronavirus","Mean Coverage"=1.99039647870886,Topology="linear","Alignment method"="MAFFT Alignment",Created=Mon Mar 09 08:59:37 ECT 2020,URN="urn:local:.:caf-bnocubz","Free end gaps"=true,"Ref Seq Name"="","Molecule Type"="AA"]:0.01233268,((MG772933__Bat_SARS_like_coronavirus_isolate_bat_SL_CoVZC45_:0.00193282,MG772934__Bat_SARS_like_coronavirus_isolate_bat_SL_CoVZXC21_:0.00772114):0.02416509,('KJ473814__BtRs_BetaCoV/HuB2013_':0.05753845,((DQ071615__Bat_SARS_coronavirus_Rp3_:0.00938571,DQ412043__Bat_SARS_coronavirus_Rm1_:0.02124187):0.01138286,((DQ084199__bat_SARS_coronavirus_HKU3_2_:0.000821,(FJ211859__Recombinant_coronavirus_clone_Bat_SARS_CoV_:0.0,(FJ211860__Recombinant_coronavirus_clone_Bat_SRBD_spike_glycoprotein_gene_:0.00352929,(KF569996__Rhinolophus_affinis_coronavirus_isolate_LYRa11_:0.0534662,((AY390556__SARS_coronavirus_GZ02_[&Organism="SARS coronavirus GZ02","Genetic Code"="Standard",Taxonomy="Viruses; Riboviria; Nidovirales; Cornidovirineae; Coronaviridae; Orthocoronavirinae; Betacoronavirus; Sarbecovirus"]:0.01824466,(KT444582__SARS_like_coronavirus_WIV16_:0.000988,KY417146__Bat_SARS_like_coronavirus_isolate_Rs4231_:0.03047342):0.00308874):0.0329138,(KY417144__Bat_SARS_like_coronavirus_isolate_Rs4084_:0.02943833,KC881006__Bat_SARS_like_coronavirus_Rs3367_:0.000557):0.05109997):0.0482862):0.20935462):0.05384553):0.0):0.02583003,(KY417148__Bat_SARS_like_coronavirus_isolate_Rs4247_:0.00298925,('MK211375__Coronavirus_BtRs_BetaCoV/YN2018A_':0.00525478,(KY417142__Bat_SARS_like_coronavirus_isolate_As6526_:0.00553531,'MK211378__Coronavirus_BtRs_BetaCoV/YN2018D_':0.07265717):0.0118123):0.0024497):0.01420568):0.00101036):0.05971997):0.20279714):0.12165062):0.12103536); tree bootstrap_21 = [&U] (MN996532__Bat_coronavirus_RaTG13_[&Organism="Bat coronavirus RaTG13","Genetic Code"="Standard",Taxonomy="Viruses; Riboviria; Nidovirales; Cornidovirineae; Coronaviridae; unclassified Coronaviridae"]:0.02089649,MN908947__Wuhan_seafood_market_pneumonia_virus_isolate_Wuhan_Hu_1_SARS_CoV_2_:0.00321873,(MT084071__Pangolin_coronavirus_isolate_MP789_[&"# Nucleotide Sequences With Mates"=0,Organism="Pangolin coronavirus",Description="Pangolin coronavirus isolate MP789 genomic sequence",Modified=Mon Mar 16 16:48:31 ECT 2020,"Genetic Code"="Standard",Taxonomy="Viruses; Riboviria; Nidovirales; Cornidovirineae; Coronaviridae; Orthocoronavirinae; Betacoronavirus; unclassified Betacoronavirus","Mean Coverage"=1.99039647870886,Topology="linear","Alignment method"="MAFFT Alignment",Created=Mon Mar 09 08:59:37 ECT 2020,URN="urn:local:.:caf-bnocubz","Free end gaps"=true,"Ref Seq Name"="","Molecule Type"="AA"]:0.01071887,((MG772934__Bat_SARS_like_coronavirus_isolate_bat_SL_CoVZXC21_:0.00896634,MG772933__Bat_SARS_like_coronavirus_isolate_bat_SL_CoVZC45_:0.00694645):0.02261994,((KF569996__Rhinolophus_affinis_coronavirus_isolate_LYRa11_:0.05858145,((KC881006__Bat_SARS_like_coronavirus_Rs3367_:0.000436,KY417144__Bat_SARS_like_coronavirus_isolate_Rs4084_:0.0428753):0.04751872,(KT444582__SARS_like_coronavirus_WIV16_:0.00105325,(AY390556__SARS_coronavirus_GZ02_[&Organism="SARS coronavirus GZ02","Genetic Code"="Standard",Taxonomy="Viruses; Riboviria; Nidovirales; Cornidovirineae; Coronaviridae; Orthocoronavirinae; Betacoronavirus; Sarbecovirus"]:0.02572181,KY417146__Bat_SARS_like_coronavirus_isolate_Rs4231_:0.04419612):0.00161683):0.02751186):0.03974739):0.18578562,('KJ473814__BtRs_BetaCoV/HuB2013_':0.07912993,(((DQ084199__bat_SARS_coronavirus_HKU3_2_:0.00258122,(FJ211860__Recombinant_coronavirus_clone_Bat_SRBD_spike_glycoprotein_gene_:0.05107988,FJ211859__Recombinant_coronavirus_clone_Bat_SARS_CoV_:0.0):0.0):0.02425345,(KY417148__Bat_SARS_like_coronavirus_isolate_Rs4247_:0.00335894,('MK211375__Coronavirus_BtRs_BetaCoV/YN2018A_':0.00277859,(KY417142__Bat_SARS_like_coronavirus_isolate_As6526_:0.00384573,'MK211378__Coronavirus_BtRs_BetaCoV/YN2018D_':0.08340822):0.00980679):0.00336326):0.01136111):0.00243383,(DQ071615__Bat_SARS_coronavirus_Rp3_:0.0129788,DQ412043__Bat_SARS_coronavirus_Rm1_:0.03448353):0.00949128):0.05992125):0.07074374):0.18374538):0.13458419):0.14210701); tree bootstrap_22 = [&U] (MN996532__Bat_coronavirus_RaTG13_[&Organism="Bat coronavirus RaTG13","Genetic Code"="Standard",Taxonomy="Viruses; Riboviria; Nidovirales; Cornidovirineae; Coronaviridae; unclassified Coronaviridae"]:0.01943075,MN908947__Wuhan_seafood_market_pneumonia_virus_isolate_Wuhan_Hu_1_SARS_CoV_2_:0.0035086,(MT084071__Pangolin_coronavirus_isolate_MP789_[&"# Nucleotide Sequences With Mates"=0,Organism="Pangolin coronavirus",Description="Pangolin coronavirus isolate MP789 genomic sequence",Modified=Mon Mar 16 16:48:31 ECT 2020,"Genetic Code"="Standard",Taxonomy="Viruses; Riboviria; Nidovirales; Cornidovirineae; Coronaviridae; Orthocoronavirinae; Betacoronavirus; unclassified Betacoronavirus","Mean Coverage"=1.99039647870886,Topology="linear","Alignment method"="MAFFT Alignment",Created=Mon Mar 09 08:59:37 ECT 2020,URN="urn:local:.:caf-bnocubz","Free end gaps"=true,"Ref Seq Name"="","Molecule Type"="AA"]:0.02017079,((MG772933__Bat_SARS_like_coronavirus_isolate_bat_SL_CoVZC45_:0.00467947,MG772934__Bat_SARS_like_coronavirus_isolate_bat_SL_CoVZXC21_:0.00790202):0.01949896,('KJ473814__BtRs_BetaCoV/HuB2013_':0.07665835,(DQ412043__Bat_SARS_coronavirus_Rm1_:0.02070732,(DQ071615__Bat_SARS_coronavirus_Rp3_:0.00816209,(((FJ211860__Recombinant_coronavirus_clone_Bat_SRBD_spike_glycoprotein_gene_:0.00138514,(KF569996__Rhinolophus_affinis_coronavirus_isolate_LYRa11_:0.05651206,((KY417144__Bat_SARS_like_coronavirus_isolate_Rs4084_:0.03427694,KC881006__Bat_SARS_like_coronavirus_Rs3367_:0.00179849):0.04817406,(AY390556__SARS_coronavirus_GZ02_[&Organism="SARS coronavirus GZ02","Genetic Code"="Standard",Taxonomy="Viruses; Riboviria; Nidovirales; Cornidovirineae; Coronaviridae; Orthocoronavirinae; Betacoronavirus; Sarbecovirus"]:0.02377968,(KY417146__Bat_SARS_like_coronavirus_isolate_Rs4231_:0.03517313,KT444582__SARS_like_coronavirus_WIV16_:0.0044594):0.00196518):0.02492878):0.03444907):0.17420227):0.05573116,(FJ211859__Recombinant_coronavirus_clone_Bat_SARS_CoV_:0.0,DQ084199__bat_SARS_coronavirus_HKU3_2_:0.0):0.0):0.02426775,(KY417148__Bat_SARS_like_coronavirus_isolate_Rs4247_:0.0026682,('MK211375__Coronavirus_BtRs_BetaCoV/YN2018A_':0.0036139,('MK211378__Coronavirus_BtRs_BetaCoV/YN2018D_':0.08080765,KY417142__Bat_SARS_like_coronavirus_isolate_As6526_:0.00468069):0.00851357):0.00299812):0.00672161):0.00465064):0.0097091):0.03612064):0.2136596):0.12422191):0.12424576); tree bootstrap_23 = [&U] (MN908947__Wuhan_seafood_market_pneumonia_virus_isolate_Wuhan_Hu_1_SARS_CoV_2_:0.00289818,MN996532__Bat_coronavirus_RaTG13_[&Organism="Bat coronavirus RaTG13","Genetic Code"="Standard",Taxonomy="Viruses; Riboviria; Nidovirales; Cornidovirineae; Coronaviridae; unclassified Coronaviridae"]:0.01989058,(MT084071__Pangolin_coronavirus_isolate_MP789_[&"# Nucleotide Sequences With Mates"=0,Organism="Pangolin coronavirus",Description="Pangolin coronavirus isolate MP789 genomic sequence",Modified=Mon Mar 16 16:48:31 ECT 2020,"Genetic Code"="Standard",Taxonomy="Viruses; Riboviria; Nidovirales; Cornidovirineae; Coronaviridae; Orthocoronavirinae; Betacoronavirus; unclassified Betacoronavirus","Mean Coverage"=1.99039647870886,Topology="linear","Alignment method"="MAFFT Alignment",Created=Mon Mar 09 08:59:37 ECT 2020,URN="urn:local:.:caf-bnocubz","Free end gaps"=true,"Ref Seq Name"="","Molecule Type"="AA"]:0.01803655,((MG772933__Bat_SARS_like_coronavirus_isolate_bat_SL_CoVZC45_:0.00123149,MG772934__Bat_SARS_like_coronavirus_isolate_bat_SL_CoVZXC21_:0.01556842):0.08310792,((KF569996__Rhinolophus_affinis_coronavirus_isolate_LYRa11_:0.05897093,((KC881006__Bat_SARS_like_coronavirus_Rs3367_:0.0,KY417144__Bat_SARS_like_coronavirus_isolate_Rs4084_:0.04058698):0.04896429,(KT444582__SARS_like_coronavirus_WIV16_:0.0,(AY390556__SARS_coronavirus_GZ02_[&Organism="SARS coronavirus GZ02","Genetic Code"="Standard",Taxonomy="Viruses; Riboviria; Nidovirales; Cornidovirineae; Coronaviridae; Orthocoronavirinae; Betacoronavirus; Sarbecovirus"]:0.01883023,KY417146__Bat_SARS_like_coronavirus_isolate_Rs4231_:0.03791849):0.00849147):0.0214556):0.04930371):0.09746329,(FJ211860__Recombinant_coronavirus_clone_Bat_SRBD_spike_glycoprotein_gene_:0.00549967,(DQ084199__bat_SARS_coronavirus_HKU3_2_:0.00244615,(FJ211859__Recombinant_coronavirus_clone_Bat_SARS_CoV_:0.0,((KY417148__Bat_SARS_like_coronavirus_isolate_Rs4247_:0.00495652,('MK211375__Coronavirus_BtRs_BetaCoV/YN2018A_':0.000884,('MK211378__Coronavirus_BtRs_BetaCoV/YN2018D_':0.07325592,KY417142__Bat_SARS_like_coronavirus_isolate_As6526_:0.00699667):0.00985236):0.000663):0.00872283,('KJ473814__BtRs_BetaCoV/HuB2013_':0.11421883,(DQ071615__Bat_SARS_coronavirus_Rp3_:0.01018693,DQ412043__Bat_SARS_coronavirus_Rm1_:0.02281738):0.00908991):0.00442271):0.0224138):0.0):0.05143305):0.11505491):0.16985884):0.0811688):0.09598538); tree bootstrap_24 = [&U] ((MN908947__Wuhan_seafood_market_pneumonia_virus_isolate_Wuhan_Hu_1_SARS_CoV_2_:0.00341188,MN996532__Bat_coronavirus_RaTG13_[&Organism="Bat coronavirus RaTG13","Genetic Code"="Standard",Taxonomy="Viruses; Riboviria; Nidovirales; Cornidovirineae; Coronaviridae; unclassified Coronaviridae"]:0.02488128):0.07486807,(MT084071__Pangolin_coronavirus_isolate_MP789_[&"# Nucleotide Sequences With Mates"=0,Organism="Pangolin coronavirus",Description="Pangolin coronavirus isolate MP789 genomic sequence",Modified=Mon Mar 16 16:48:31 ECT 2020,"Genetic Code"="Standard",Taxonomy="Viruses; Riboviria; Nidovirales; Cornidovirineae; Coronaviridae; Orthocoronavirinae; Betacoronavirus; unclassified Betacoronavirus","Mean Coverage"=1.99039647870886,Topology="linear","Alignment method"="MAFFT Alignment",Created=Mon Mar 09 08:59:37 ECT 2020,URN="urn:local:.:caf-bnocubz","Free end gaps"=true,"Ref Seq Name"="","Molecule Type"="AA"]:0.02391788,(MG772933__Bat_SARS_like_coronavirus_isolate_bat_SL_CoVZC45_:0.00174243,MG772934__Bat_SARS_like_coronavirus_isolate_bat_SL_CoVZXC21_:0.0177422):0.13342039):0.04216914,((FJ211860__Recombinant_coronavirus_clone_Bat_SRBD_spike_glycoprotein_gene_:0.0,((FJ211859__Recombinant_coronavirus_clone_Bat_SARS_CoV_:0.0,DQ084199__bat_SARS_coronavirus_HKU3_2_:0.0):0.0,('KJ473814__BtRs_BetaCoV/HuB2013_':0.12080752,((DQ071615__Bat_SARS_coronavirus_Rp3_:0.01402053,DQ412043__Bat_SARS_coronavirus_Rm1_:0.02974374):0.00802927,(KY417148__Bat_SARS_like_coronavirus_isolate_Rs4247_:0.00280088,('MK211375__Coronavirus_BtRs_BetaCoV/YN2018A_':0.0,(KY417142__Bat_SARS_like_coronavirus_isolate_As6526_:0.00442343,'MK211378__Coronavirus_BtRs_BetaCoV/YN2018D_':0.08199924):0.00854844):0.00647473):0.00871305):0.000606):0.02990766):0.05448482):0.09974366,(KF569996__Rhinolophus_affinis_coronavirus_isolate_LYRa11_:0.06199182,((KY417144__Bat_SARS_like_coronavirus_isolate_Rs4084_:0.02858295,KC881006__Bat_SARS_like_coronavirus_Rs3367_:0.00294199):0.06306279,(AY390556__SARS_coronavirus_GZ02_[&Organism="SARS coronavirus GZ02","Genetic Code"="Standard",Taxonomy="Viruses; Riboviria; Nidovirales; Cornidovirineae; Coronaviridae; Orthocoronavirinae; Betacoronavirus; Sarbecovirus"]:0.01749862,(KT444582__SARS_like_coronavirus_WIV16_:0.00581674,KY417146__Bat_SARS_like_coronavirus_isolate_Rs4231_:0.03298869):0.000973):0.0288841):0.04023165):0.0882523):0.20736302); tree bootstrap_25 = [&U] (MN908947__Wuhan_seafood_market_pneumonia_virus_isolate_Wuhan_Hu_1_SARS_CoV_2_:0.00861327,MN996532__Bat_coronavirus_RaTG13_[&Organism="Bat coronavirus RaTG13","Genetic Code"="Standard",Taxonomy="Viruses; Riboviria; Nidovirales; Cornidovirineae; Coronaviridae; unclassified Coronaviridae"]:0.02189499,(MT084071__Pangolin_coronavirus_isolate_MP789_[&"# Nucleotide Sequences With Mates"=0,Organism="Pangolin coronavirus",Description="Pangolin coronavirus isolate MP789 genomic sequence",Modified=Mon Mar 16 16:48:31 ECT 2020,"Genetic Code"="Standard",Taxonomy="Viruses; Riboviria; Nidovirales; Cornidovirineae; Coronaviridae; Orthocoronavirinae; Betacoronavirus; unclassified Betacoronavirus","Mean Coverage"=1.99039647870886,Topology="linear","Alignment method"="MAFFT Alignment",Created=Mon Mar 09 08:59:37 ECT 2020,URN="urn:local:.:caf-bnocubz","Free end gaps"=true,"Ref Seq Name"="","Molecule Type"="AA"]:0.01572338,((MG772933__Bat_SARS_like_coronavirus_isolate_bat_SL_CoVZC45_:0.00345879,MG772934__Bat_SARS_like_coronavirus_isolate_bat_SL_CoVZXC21_:0.00922472):0.0919759,((KF569996__Rhinolophus_affinis_coronavirus_isolate_LYRa11_:0.05741215,((KY417144__Bat_SARS_like_coronavirus_isolate_Rs4084_:0.02704569,KC881006__Bat_SARS_like_coronavirus_Rs3367_:0.00147829):0.05185058,(AY390556__SARS_coronavirus_GZ02_[&Organism="SARS coronavirus GZ02","Genetic Code"="Standard",Taxonomy="Viruses; Riboviria; Nidovirales; Cornidovirineae; Coronaviridae; Orthocoronavirinae; Betacoronavirus; Sarbecovirus"]:0.02958257,(KY417146__Bat_SARS_like_coronavirus_isolate_Rs4231_:0.03144909,KT444582__SARS_like_coronavirus_WIV16_:0.00124383):0.000882):0.027096):0.03216871):0.11092114,(FJ211860__Recombinant_coronavirus_clone_Bat_SRBD_spike_glycoprotein_gene_:0.000981,((FJ211859__Recombinant_coronavirus_clone_Bat_SARS_CoV_:0.0,DQ084199__bat_SARS_coronavirus_HKU3_2_:0.00168924):0.0,(((KY417142__Bat_SARS_like_coronavirus_isolate_As6526_:0.00947305,'MK211375__Coronavirus_BtRs_BetaCoV/YN2018A_':0.000854):0.00839854,(KY417148__Bat_SARS_like_coronavirus_isolate_Rs4247_:0.0,('MK211378__Coronavirus_BtRs_BetaCoV/YN2018D_':0.05361234,'KJ473814__BtRs_BetaCoV/HuB2013_':0.10566072):0.04470858):0.00183933):0.00740587,(DQ071615__Bat_SARS_coronavirus_Rp3_:0.0119781,DQ412043__Bat_SARS_coronavirus_Rm1_:0.04338042):0.00838512):0.03463299):0.05086259):0.11694036):0.21018366):0.05594822):0.13207979); tree bootstrap_26 = [&U] (MN996532__Bat_coronavirus_RaTG13_[&Organism="Bat coronavirus RaTG13","Genetic Code"="Standard",Taxonomy="Viruses; Riboviria; Nidovirales; Cornidovirineae; Coronaviridae; unclassified Coronaviridae"]:0.01533098,MN908947__Wuhan_seafood_market_pneumonia_virus_isolate_Wuhan_Hu_1_SARS_CoV_2_:0.01142931,(MT084071__Pangolin_coronavirus_isolate_MP789_[&"# Nucleotide Sequences With Mates"=0,Organism="Pangolin coronavirus",Description="Pangolin coronavirus isolate MP789 genomic sequence",Modified=Mon Mar 16 16:48:31 ECT 2020,"Genetic Code"="Standard",Taxonomy="Viruses; Riboviria; Nidovirales; Cornidovirineae; Coronaviridae; Orthocoronavirinae; Betacoronavirus; unclassified Betacoronavirus","Mean Coverage"=1.99039647870886,Topology="linear","Alignment method"="MAFFT Alignment",Created=Mon Mar 09 08:59:37 ECT 2020,URN="urn:local:.:caf-bnocubz","Free end gaps"=true,"Ref Seq Name"="","Molecule Type"="AA"]:0.01129285,((MG772934__Bat_SARS_like_coronavirus_isolate_bat_SL_CoVZXC21_:0.01245423,MG772933__Bat_SARS_like_coronavirus_isolate_bat_SL_CoVZC45_:0.00204599):0.01130483,('KJ473814__BtRs_BetaCoV/HuB2013_':0.09180006,(DQ412043__Bat_SARS_coronavirus_Rm1_:0.02607957,(((FJ211860__Recombinant_coronavirus_clone_Bat_SRBD_spike_glycoprotein_gene_:0.00387854,(KF569996__Rhinolophus_affinis_coronavirus_isolate_LYRa11_:0.05872781,((KT444582__SARS_like_coronavirus_WIV16_:0.00721428,(KY417146__Bat_SARS_like_coronavirus_isolate_Rs4231_:0.03530295,AY390556__SARS_coronavirus_GZ02_[&Organism="SARS coronavirus GZ02","Genetic Code"="Standard",Taxonomy="Viruses; Riboviria; Nidovirales; Cornidovirineae; Coronaviridae; Orthocoronavirinae; Betacoronavirus; Sarbecovirus"]:0.02449155):0.000911):0.02995329,(KC881006__Bat_SARS_like_coronavirus_Rs3367_:0.00514586,KY417144__Bat_SARS_like_coronavirus_isolate_Rs4084_:0.03274579):0.04833089):0.05221522):0.1663558):0.0497181,(FJ211859__Recombinant_coronavirus_clone_Bat_SARS_CoV_:0.0,DQ084199__bat_SARS_coronavirus_HKU3_2_:0.0):0.0):0.01910606,(DQ071615__Bat_SARS_coronavirus_Rp3_:0.01899742,((KY417148__Bat_SARS_like_coronavirus_isolate_Rs4247_:0.0,'MK211378__Coronavirus_BtRs_BetaCoV/YN2018D_':0.06809137):0.00368755,('MK211375__Coronavirus_BtRs_BetaCoV/YN2018A_':0.00345843,KY417142__Bat_SARS_like_coronavirus_isolate_As6526_:0.00758648):0.00311061):0.00904353):0.00410911):0.00697719):0.03916627):0.20256866):0.13876218):0.11263275); tree bootstrap_27 = [&U] (MN996532__Bat_coronavirus_RaTG13_[&Organism="Bat coronavirus RaTG13","Genetic Code"="Standard",Taxonomy="Viruses; Riboviria; Nidovirales; Cornidovirineae; Coronaviridae; unclassified Coronaviridae"]:0.01513069,MN908947__Wuhan_seafood_market_pneumonia_virus_isolate_Wuhan_Hu_1_SARS_CoV_2_:0.00677595,(MT084071__Pangolin_coronavirus_isolate_MP789_[&"# Nucleotide Sequences With Mates"=0,Organism="Pangolin coronavirus",Description="Pangolin coronavirus isolate MP789 genomic sequence",Modified=Mon Mar 16 16:48:31 ECT 2020,"Genetic Code"="Standard",Taxonomy="Viruses; Riboviria; Nidovirales; Cornidovirineae; Coronaviridae; Orthocoronavirinae; Betacoronavirus; unclassified Betacoronavirus","Mean Coverage"=1.99039647870886,Topology="linear","Alignment method"="MAFFT Alignment",Created=Mon Mar 09 08:59:37 ECT 2020,URN="urn:local:.:caf-bnocubz","Free end gaps"=true,"Ref Seq Name"="","Molecule Type"="AA"]:0.01231659,((MG772934__Bat_SARS_like_coronavirus_isolate_bat_SL_CoVZXC21_:0.01137929,MG772933__Bat_SARS_like_coronavirus_isolate_bat_SL_CoVZC45_:0.00452284):0.08071154,((KF569996__Rhinolophus_affinis_coronavirus_isolate_LYRa11_:0.06867787,((KC881006__Bat_SARS_like_coronavirus_Rs3367_:0.0,KY417144__Bat_SARS_like_coronavirus_isolate_Rs4084_:0.02959001):0.04733485,(AY390556__SARS_coronavirus_GZ02_[&Organism="SARS coronavirus GZ02","Genetic Code"="Standard",Taxonomy="Viruses; Riboviria; Nidovirales; Cornidovirineae; Coronaviridae; Orthocoronavirinae; Betacoronavirus; Sarbecovirus"]:0.01793056,(KY417146__Bat_SARS_like_coronavirus_isolate_Rs4231_:0.02989323,KT444582__SARS_like_coronavirus_WIV16_:0.000226):0.00573448):0.02862675):0.03465226):0.09460845,(FJ211860__Recombinant_coronavirus_clone_Bat_SRBD_spike_glycoprotein_gene_:0.0,((FJ211859__Recombinant_coronavirus_clone_Bat_SARS_CoV_:0.0,DQ084199__bat_SARS_coronavirus_HKU3_2_:0.00164325):0.0,(((KY417142__Bat_SARS_like_coronavirus_isolate_As6526_:0.00921646,'MK211375__Coronavirus_BtRs_BetaCoV/YN2018A_':0.000836):0.00398054,(KY417148__Bat_SARS_like_coronavirus_isolate_Rs4247_:0.0,('MK211378__Coronavirus_BtRs_BetaCoV/YN2018D_':0.04389335,'KJ473814__BtRs_BetaCoV/HuB2013_':0.11725053):0.03949449):0.00177321):0.00981781,(DQ071615__Bat_SARS_coronavirus_Rp3_:0.00887705,DQ412043__Bat_SARS_coronavirus_Rm1_:0.02946107):0.00689959):0.02147606):0.05236946):0.10886744):0.20584568):0.06264207):0.12914604); tree bootstrap_28 = [&U] (MN908947__Wuhan_seafood_market_pneumonia_virus_isolate_Wuhan_Hu_1_SARS_CoV_2_:0.00783955,MN996532__Bat_coronavirus_RaTG13_[&Organism="Bat coronavirus RaTG13","Genetic Code"="Standard",Taxonomy="Viruses; Riboviria; Nidovirales; Cornidovirineae; Coronaviridae; unclassified Coronaviridae"]:0.02622631,(MT084071__Pangolin_coronavirus_isolate_MP789_[&"# Nucleotide Sequences With Mates"=0,Organism="Pangolin coronavirus",Description="Pangolin coronavirus isolate MP789 genomic sequence",Modified=Mon Mar 16 16:48:31 ECT 2020,"Genetic Code"="Standard",Taxonomy="Viruses; Riboviria; Nidovirales; Cornidovirineae; Coronaviridae; Orthocoronavirinae; Betacoronavirus; unclassified Betacoronavirus","Mean Coverage"=1.99039647870886,Topology="linear","Alignment method"="MAFFT Alignment",Created=Mon Mar 09 08:59:37 ECT 2020,URN="urn:local:.:caf-bnocubz","Free end gaps"=true,"Ref Seq Name"="","Molecule Type"="AA"]:0.0213938,((MG772934__Bat_SARS_like_coronavirus_isolate_bat_SL_CoVZXC21_:0.01085736,MG772933__Bat_SARS_like_coronavirus_isolate_bat_SL_CoVZC45_:0.00304193):0.0313083,('KJ473814__BtRs_BetaCoV/HuB2013_':0.08301189,(DQ412043__Bat_SARS_coronavirus_Rm1_:0.0317292,(((FJ211860__Recombinant_coronavirus_clone_Bat_SRBD_spike_glycoprotein_gene_:0.00251259,(KF569996__Rhinolophus_affinis_coronavirus_isolate_LYRa11_:0.07044091,((KT444582__SARS_like_coronavirus_WIV16_:0.000864,(KY417146__Bat_SARS_like_coronavirus_isolate_Rs4231_:0.05021434,AY390556__SARS_coronavirus_GZ02_[&Organism="SARS coronavirus GZ02","Genetic Code"="Standard",Taxonomy="Viruses; Riboviria; Nidovirales; Cornidovirineae; Coronaviridae; Orthocoronavirinae; Betacoronavirus; Sarbecovirus"]:0.02488889):0.000985):0.02454311,(KY417144__Bat_SARS_like_coronavirus_isolate_Rs4084_:0.0457764,KC881006__Bat_SARS_like_coronavirus_Rs3367_:0.0012355):0.05464627):0.045848):0.21755949):0.05974511,(FJ211859__Recombinant_coronavirus_clone_Bat_SARS_CoV_:0.0,DQ084199__bat_SARS_coronavirus_HKU3_2_:0.0):0.0):0.02370016,(DQ071615__Bat_SARS_coronavirus_Rp3_:0.01803284,(KY417148__Bat_SARS_like_coronavirus_isolate_Rs4247_:0.000903,('MK211375__Coronavirus_BtRs_BetaCoV/YN2018A_':0.00173289,(KY417142__Bat_SARS_like_coronavirus_isolate_As6526_:0.00314333,'MK211378__Coronavirus_BtRs_BetaCoV/YN2018D_':0.0910395):0.01158208):0.00852299):0.00907612):0.00592354):0.00401689):0.04744889):0.23728162):0.16759426):0.12078907); tree bootstrap_29 = [&U] (MN908947__Wuhan_seafood_market_pneumonia_virus_isolate_Wuhan_Hu_1_SARS_CoV_2_:0.00747607,MN996532__Bat_coronavirus_RaTG13_[&Organism="Bat coronavirus RaTG13","Genetic Code"="Standard",Taxonomy="Viruses; Riboviria; Nidovirales; Cornidovirineae; Coronaviridae; unclassified Coronaviridae"]:0.01269035,(MT084071__Pangolin_coronavirus_isolate_MP789_[&"# Nucleotide Sequences With Mates"=0,Organism="Pangolin coronavirus",Description="Pangolin coronavirus isolate MP789 genomic sequence",Modified=Mon Mar 16 16:48:31 ECT 2020,"Genetic Code"="Standard",Taxonomy="Viruses; Riboviria; Nidovirales; Cornidovirineae; Coronaviridae; Orthocoronavirinae; Betacoronavirus; unclassified Betacoronavirus","Mean Coverage"=1.99039647870886,Topology="linear","Alignment method"="MAFFT Alignment",Created=Mon Mar 09 08:59:37 ECT 2020,URN="urn:local:.:caf-bnocubz","Free end gaps"=true,"Ref Seq Name"="","Molecule Type"="AA"]:0.0130515,((MG772934__Bat_SARS_like_coronavirus_isolate_bat_SL_CoVZXC21_:0.00930281,MG772933__Bat_SARS_like_coronavirus_isolate_bat_SL_CoVZC45_:0.00523657):0.01780355,('KJ473814__BtRs_BetaCoV/HuB2013_':0.07765548,(DQ412043__Bat_SARS_coronavirus_Rm1_:0.01849109,((FJ211859__Recombinant_coronavirus_clone_Bat_SARS_CoV_:0.0,(DQ084199__bat_SARS_coronavirus_HKU3_2_:0.0,(FJ211860__Recombinant_coronavirus_clone_Bat_SRBD_spike_glycoprotein_gene_:0.000867,(KF569996__Rhinolophus_affinis_coronavirus_isolate_LYRa11_:0.07053641,((KC881006__Bat_SARS_like_coronavirus_Rs3367_:0.00169267,KY417144__Bat_SARS_like_coronavirus_isolate_Rs4084_:0.02819972):0.06379353,(AY390556__SARS_coronavirus_GZ02_[&Organism="SARS coronavirus GZ02","Genetic Code"="Standard",Taxonomy="Viruses; Riboviria; Nidovirales; Cornidovirineae; Coronaviridae; Orthocoronavirinae; Betacoronavirus; Sarbecovirus"]:0.02121609,(KT444582__SARS_like_coronavirus_WIV16_:0.00313963,KY417146__Bat_SARS_like_coronavirus_isolate_Rs4231_:0.02936586):0.0016468):0.02776709):0.04542344):0.20841014):0.05105001):0.0):0.02636973,(DQ071615__Bat_SARS_coronavirus_Rp3_:0.0071884,(('MK211378__Coronavirus_BtRs_BetaCoV/YN2018D_':0.08806125,KY417142__Bat_SARS_like_coronavirus_isolate_As6526_:0.01156159):0.00676934,(KY417148__Bat_SARS_like_coronavirus_isolate_Rs4247_:0.00151834,'MK211375__Coronavirus_BtRs_BetaCoV/YN2018A_':0.00793055):0.0077264):0.00674433):0.00440071):0.01450172):0.04961736):0.23917955):0.13200701):0.11678419); tree bootstrap_30 = [&U] (MN908947__Wuhan_seafood_market_pneumonia_virus_isolate_Wuhan_Hu_1_SARS_CoV_2_:0.01203216,MN996532__Bat_coronavirus_RaTG13_[&Organism="Bat coronavirus RaTG13","Genetic Code"="Standard",Taxonomy="Viruses; Riboviria; Nidovirales; Cornidovirineae; Coronaviridae; unclassified Coronaviridae"]:0.0219714,(MT084071__Pangolin_coronavirus_isolate_MP789_[&"# Nucleotide Sequences With Mates"=0,Organism="Pangolin coronavirus",Description="Pangolin coronavirus isolate MP789 genomic sequence",Modified=Mon Mar 16 16:48:31 ECT 2020,"Genetic Code"="Standard",Taxonomy="Viruses; Riboviria; Nidovirales; Cornidovirineae; Coronaviridae; Orthocoronavirinae; Betacoronavirus; unclassified Betacoronavirus","Mean Coverage"=1.99039647870886,Topology="linear","Alignment method"="MAFFT Alignment",Created=Mon Mar 09 08:59:37 ECT 2020,URN="urn:local:.:caf-bnocubz","Free end gaps"=true,"Ref Seq Name"="","Molecule Type"="AA"]:0.01418557,((MG772933__Bat_SARS_like_coronavirus_isolate_bat_SL_CoVZC45_:0.00815723,MG772934__Bat_SARS_like_coronavirus_isolate_bat_SL_CoVZXC21_:0.00905975):0.01977821,('KJ473814__BtRs_BetaCoV/HuB2013_':0.07316123,(DQ412043__Bat_SARS_coronavirus_Rm1_:0.01542658,(DQ071615__Bat_SARS_coronavirus_Rp3_:0.01715562,(((FJ211860__Recombinant_coronavirus_clone_Bat_SRBD_spike_glycoprotein_gene_:0.000699,(KF569996__Rhinolophus_affinis_coronavirus_isolate_LYRa11_:0.08707985,((KC881006__Bat_SARS_like_coronavirus_Rs3367_:0.000594,KY417144__Bat_SARS_like_coronavirus_isolate_Rs4084_:0.03223376):0.06118646,(KT444582__SARS_like_coronavirus_WIV16_:0.00189788,(AY390556__SARS_coronavirus_GZ02_[&Organism="SARS coronavirus GZ02","Genetic Code"="Standard",Taxonomy="Viruses; Riboviria; Nidovirales; Cornidovirineae; Coronaviridae; Orthocoronavirinae; Betacoronavirus; Sarbecovirus"]:0.02501721,KY417146__Bat_SARS_like_coronavirus_isolate_Rs4231_:0.03300465):0.00318668):0.02501215):0.05043341):0.16982653):0.05193104,(DQ084199__bat_SARS_coronavirus_HKU3_2_:0.0025547,FJ211859__Recombinant_coronavirus_clone_Bat_SARS_CoV_:0.0):0.0):0.02294251,(('MK211378__Coronavirus_BtRs_BetaCoV/YN2018D_':0.07810871,KY417148__Bat_SARS_like_coronavirus_isolate_Rs4247_:0.0):0.0016393,('MK211375__Coronavirus_BtRs_BetaCoV/YN2018A_':0.0,KY417142__Bat_SARS_like_coronavirus_isolate_As6526_:0.01289461):0.0087075):0.00755603):0.00526281):0.01234561):0.04479738):0.21406542):0.15750585):0.13564686); tree bootstrap_31 = [&U] (MN908947__Wuhan_seafood_market_pneumonia_virus_isolate_Wuhan_Hu_1_SARS_CoV_2_:0.00448586,MN996532__Bat_coronavirus_RaTG13_[&Organism="Bat coronavirus RaTG13","Genetic Code"="Standard",Taxonomy="Viruses; Riboviria; Nidovirales; Cornidovirineae; Coronaviridae; unclassified Coronaviridae"]:0.02323652,(MT084071__Pangolin_coronavirus_isolate_MP789_[&"# Nucleotide Sequences With Mates"=0,Organism="Pangolin coronavirus",Description="Pangolin coronavirus isolate MP789 genomic sequence",Modified=Mon Mar 16 16:48:31 ECT 2020,"Genetic Code"="Standard",Taxonomy="Viruses; Riboviria; Nidovirales; Cornidovirineae; Coronaviridae; Orthocoronavirinae; Betacoronavirus; unclassified Betacoronavirus","Mean Coverage"=1.99039647870886,Topology="linear","Alignment method"="MAFFT Alignment",Created=Mon Mar 09 08:59:37 ECT 2020,URN="urn:local:.:caf-bnocubz","Free end gaps"=true,"Ref Seq Name"="","Molecule Type"="AA"]:0.01213994,((MG772933__Bat_SARS_like_coronavirus_isolate_bat_SL_CoVZC45_:0.00204885,MG772934__Bat_SARS_like_coronavirus_isolate_bat_SL_CoVZXC21_:0.00970418):0.02499266,('KJ473814__BtRs_BetaCoV/HuB2013_':0.06434533,((DQ071615__Bat_SARS_coronavirus_Rp3_:0.01271724,DQ412043__Bat_SARS_coronavirus_Rm1_:0.03066051):0.00632909,(((FJ211860__Recombinant_coronavirus_clone_Bat_SRBD_spike_glycoprotein_gene_:0.00522193,(KF569996__Rhinolophus_affinis_coronavirus_isolate_LYRa11_:0.05371849,((AY390556__SARS_coronavirus_GZ02_[&Organism="SARS coronavirus GZ02","Genetic Code"="Standard",Taxonomy="Viruses; Riboviria; Nidovirales; Cornidovirineae; Coronaviridae; Orthocoronavirinae; Betacoronavirus; Sarbecovirus"]:0.02668351,(KY417146__Bat_SARS_like_coronavirus_isolate_Rs4231_:0.04244997,KT444582__SARS_like_coronavirus_WIV16_:0.000876):0.00186375):0.0220464,(KY417144__Bat_SARS_like_coronavirus_isolate_Rs4084_:0.04498239,KC881006__Bat_SARS_like_coronavirus_Rs3367_:0.00198403):0.04800644):0.03504679):0.17910447):0.05212914,(FJ211859__Recombinant_coronavirus_clone_Bat_SARS_CoV_:0.0,DQ084199__bat_SARS_coronavirus_HKU3_2_:0.000826):0.0):0.01520505,(KY417148__Bat_SARS_like_coronavirus_isolate_Rs4247_:0.00122099,('MK211375__Coronavirus_BtRs_BetaCoV/YN2018A_':0.00345203,('MK211378__Coronavirus_BtRs_BetaCoV/YN2018D_':0.08307593,KY417142__Bat_SARS_like_coronavirus_isolate_As6526_:0.00316578):0.00884309):0.00270809):0.01141775):0.000897):0.06284182):0.18399659):0.1303051):0.10410026); tree bootstrap_32 = [&U] (MN908947__Wuhan_seafood_market_pneumonia_virus_isolate_Wuhan_Hu_1_SARS_CoV_2_:0.00245387,MN996532__Bat_coronavirus_RaTG13_[&Organism="Bat coronavirus RaTG13","Genetic Code"="Standard",Taxonomy="Viruses; Riboviria; Nidovirales; Cornidovirineae; Coronaviridae; unclassified Coronaviridae"]:0.02552594,(MT084071__Pangolin_coronavirus_isolate_MP789_[&"# Nucleotide Sequences With Mates"=0,Organism="Pangolin coronavirus",Description="Pangolin coronavirus isolate MP789 genomic sequence",Modified=Mon Mar 16 16:48:31 ECT 2020,"Genetic Code"="Standard",Taxonomy="Viruses; Riboviria; Nidovirales; Cornidovirineae; Coronaviridae; Orthocoronavirinae; Betacoronavirus; unclassified Betacoronavirus","Mean Coverage"=1.99039647870886,Topology="linear","Alignment method"="MAFFT Alignment",Created=Mon Mar 09 08:59:37 ECT 2020,URN="urn:local:.:caf-bnocubz","Free end gaps"=true,"Ref Seq Name"="","Molecule Type"="AA"]:0.00931267,((MG772934__Bat_SARS_like_coronavirus_isolate_bat_SL_CoVZXC21_:0.00898799,MG772933__Bat_SARS_like_coronavirus_isolate_bat_SL_CoVZC45_:0.00735587):0.02216132,('KJ473814__BtRs_BetaCoV/HuB2013_':0.06207276,(DQ412043__Bat_SARS_coronavirus_Rm1_:0.02488484,(((FJ211860__Recombinant_coronavirus_clone_Bat_SRBD_spike_glycoprotein_gene_:0.000999,(KF569996__Rhinolophus_affinis_coronavirus_isolate_LYRa11_:0.05864936,((KY417144__Bat_SARS_like_coronavirus_isolate_Rs4084_:0.0336176,KC881006__Bat_SARS_like_coronavirus_Rs3367_:0.00220919):0.05256256,(AY390556__SARS_coronavirus_GZ02_[&Organism="SARS coronavirus GZ02","Genetic Code"="Standard",Taxonomy="Viruses; Riboviria; Nidovirales; Cornidovirineae; Coronaviridae; Orthocoronavirinae; Betacoronavirus; Sarbecovirus"]:0.02419935,(KT444582__SARS_like_coronavirus_WIV16_:0.00245562,KY417146__Bat_SARS_like_coronavirus_isolate_Rs4231_:0.03457442):0.00109371):0.03769951):0.04461413):0.19052597):0.04970689,(DQ084199__bat_SARS_coronavirus_HKU3_2_:0.0,FJ211859__Recombinant_coronavirus_clone_Bat_SARS_CoV_:0.0):0.0):0.02458846,(('MK211375__Coronavirus_BtRs_BetaCoV/YN2018A_':0.00356393,KY417148__Bat_SARS_like_coronavirus_isolate_Rs4247_:0.00136657):0.0,(DQ071615__Bat_SARS_coronavirus_Rp3_:0.01576796,('MK211378__Coronavirus_BtRs_BetaCoV/YN2018D_':0.07093513,KY417142__Bat_SARS_like_coronavirus_isolate_As6526_:0.00766882):0.0041304):0.00692531):0.01060373):0.01315204):0.0573911):0.25176079):0.13954362):0.11574301); tree bootstrap_33 = [&U] (MN996532__Bat_coronavirus_RaTG13_[&Organism="Bat coronavirus RaTG13","Genetic Code"="Standard",Taxonomy="Viruses; Riboviria; Nidovirales; Cornidovirineae; Coronaviridae; unclassified Coronaviridae"]:0.01799595,MN908947__Wuhan_seafood_market_pneumonia_virus_isolate_Wuhan_Hu_1_SARS_CoV_2_:0.00395761,(MT084071__Pangolin_coronavirus_isolate_MP789_[&"# Nucleotide Sequences With Mates"=0,Organism="Pangolin coronavirus",Description="Pangolin coronavirus isolate MP789 genomic sequence",Modified=Mon Mar 16 16:48:31 ECT 2020,"Genetic Code"="Standard",Taxonomy="Viruses; Riboviria; Nidovirales; Cornidovirineae; Coronaviridae; Orthocoronavirinae; Betacoronavirus; unclassified Betacoronavirus","Mean Coverage"=1.99039647870886,Topology="linear","Alignment method"="MAFFT Alignment",Created=Mon Mar 09 08:59:37 ECT 2020,URN="urn:local:.:caf-bnocubz","Free end gaps"=true,"Ref Seq Name"="","Molecule Type"="AA"]:0.017998,((MG772933__Bat_SARS_like_coronavirus_isolate_bat_SL_CoVZC45_:0.00497622,MG772934__Bat_SARS_like_coronavirus_isolate_bat_SL_CoVZXC21_:0.00710508):0.02025169,('KJ473814__BtRs_BetaCoV/HuB2013_':0.06412256,(DQ412043__Bat_SARS_coronavirus_Rm1_:0.0165998,(((FJ211860__Recombinant_coronavirus_clone_Bat_SRBD_spike_glycoprotein_gene_:0.00366399,(KF569996__Rhinolophus_affinis_coronavirus_isolate_LYRa11_:0.05199399,((KY417144__Bat_SARS_like_coronavirus_isolate_Rs4084_:0.03097516,KC881006__Bat_SARS_like_coronavirus_Rs3367_:0.0):0.05562088,(KT444582__SARS_like_coronavirus_WIV16_:0.00292158,(AY390556__SARS_coronavirus_GZ02_[&Organism="SARS coronavirus GZ02","Genetic Code"="Standard",Taxonomy="Viruses; Riboviria; Nidovirales; Cornidovirineae; Coronaviridae; Orthocoronavirinae; Betacoronavirus; Sarbecovirus"]:0.03433439,KY417146__Bat_SARS_like_coronavirus_isolate_Rs4231_:0.03046135):0.00304833):0.02513922):0.04598934):0.19507787):0.04960233,(FJ211859__Recombinant_coronavirus_clone_Bat_SARS_CoV_:0.0,DQ084199__bat_SARS_coronavirus_HKU3_2_:0.000815):0.0):0.01989116,(DQ071615__Bat_SARS_coronavirus_Rp3_:0.01556281,(KY417148__Bat_SARS_like_coronavirus_isolate_Rs4247_:0.00246219,('MK211375__Coronavirus_BtRs_BetaCoV/YN2018A_':0.00260942,(KY417142__Bat_SARS_like_coronavirus_isolate_As6526_:0.00424792,'MK211378__Coronavirus_BtRs_BetaCoV/YN2018D_':0.06491979):0.00506432):0.00306426):0.00969617):0.00159288):0.01003349):0.04508867):0.23040771):0.1312328):0.14314559); tree bootstrap_34 = [&U] (MN908947__Wuhan_seafood_market_pneumonia_virus_isolate_Wuhan_Hu_1_SARS_CoV_2_:0.00623932,MN996532__Bat_coronavirus_RaTG13_[&Organism="Bat coronavirus RaTG13","Genetic Code"="Standard",Taxonomy="Viruses; Riboviria; Nidovirales; Cornidovirineae; Coronaviridae; unclassified Coronaviridae"]:0.0185508,(MT084071__Pangolin_coronavirus_isolate_MP789_[&"# Nucleotide Sequences With Mates"=0,Organism="Pangolin coronavirus",Description="Pangolin coronavirus isolate MP789 genomic sequence",Modified=Mon Mar 16 16:48:31 ECT 2020,"Genetic Code"="Standard",Taxonomy="Viruses; Riboviria; Nidovirales; Cornidovirineae; Coronaviridae; Orthocoronavirinae; Betacoronavirus; unclassified Betacoronavirus","Mean Coverage"=1.99039647870886,Topology="linear","Alignment method"="MAFFT Alignment",Created=Mon Mar 09 08:59:37 ECT 2020,URN="urn:local:.:caf-bnocubz","Free end gaps"=true,"Ref Seq Name"="","Molecule Type"="AA"]:0.01501583,((MG772933__Bat_SARS_like_coronavirus_isolate_bat_SL_CoVZC45_:0.00759699,MG772934__Bat_SARS_like_coronavirus_isolate_bat_SL_CoVZXC21_:0.00352419):0.02150666,('KJ473814__BtRs_BetaCoV/HuB2013_':0.07236749,((DQ412043__Bat_SARS_coronavirus_Rm1_:0.02329879,DQ071615__Bat_SARS_coronavirus_Rp3_:0.01414426):0.01525269,((FJ211859__Recombinant_coronavirus_clone_Bat_SARS_CoV_:0.0,(DQ084199__bat_SARS_coronavirus_HKU3_2_:0.000872,(FJ211860__Recombinant_coronavirus_clone_Bat_SRBD_spike_glycoprotein_gene_:0.000677,(KF569996__Rhinolophus_affinis_coronavirus_isolate_LYRa11_:0.06881741,(AY390556__SARS_coronavirus_GZ02_[&Organism="SARS coronavirus GZ02","Genetic Code"="Standard",Taxonomy="Viruses; Riboviria; Nidovirales; Cornidovirineae; Coronaviridae; Orthocoronavirinae; Betacoronavirus; Sarbecovirus"]:0.02204489,(KY417146__Bat_SARS_like_coronavirus_isolate_Rs4231_:0.04221683,(KT444582__SARS_like_coronavirus_WIV16_:0.00185385,(KY417144__Bat_SARS_like_coronavirus_isolate_Rs4084_:0.04259834,KC881006__Bat_SARS_like_coronavirus_Rs3367_:0.00113982):0.07421932):0.00600486):0.00408183):0.06956138):0.19290905):0.05178631):0.0):0.02241989,(KY417148__Bat_SARS_like_coronavirus_isolate_Rs4247_:0.00686539,('MK211375__Coronavirus_BtRs_BetaCoV/YN2018A_':0.00288908,(KY417142__Bat_SARS_like_coronavirus_isolate_As6526_:0.00641916,'MK211378__Coronavirus_BtRs_BetaCoV/YN2018D_':0.07543619):0.01395983):0.0):0.01624255):0.00371725):0.05179661):0.23332983):0.16532806):0.12093014); tree bootstrap_35 = [&U] (MN908947__Wuhan_seafood_market_pneumonia_virus_isolate_Wuhan_Hu_1_SARS_CoV_2_:0.00684136,MN996532__Bat_coronavirus_RaTG13_[&Organism="Bat coronavirus RaTG13","Genetic Code"="Standard",Taxonomy="Viruses; Riboviria; Nidovirales; Cornidovirineae; Coronaviridae; unclassified Coronaviridae"]:0.02490705,(MT084071__Pangolin_coronavirus_isolate_MP789_[&"# Nucleotide Sequences With Mates"=0,Organism="Pangolin coronavirus",Description="Pangolin coronavirus isolate MP789 genomic sequence",Modified=Mon Mar 16 16:48:31 ECT 2020,"Genetic Code"="Standard",Taxonomy="Viruses; Riboviria; Nidovirales; Cornidovirineae; Coronaviridae; Orthocoronavirinae; Betacoronavirus; unclassified Betacoronavirus","Mean Coverage"=1.99039647870886,Topology="linear","Alignment method"="MAFFT Alignment",Created=Mon Mar 09 08:59:37 ECT 2020,URN="urn:local:.:caf-bnocubz","Free end gaps"=true,"Ref Seq Name"="","Molecule Type"="AA"]:0.01810078,((MG772934__Bat_SARS_like_coronavirus_isolate_bat_SL_CoVZXC21_:0.01251821,MG772933__Bat_SARS_like_coronavirus_isolate_bat_SL_CoVZC45_:0.00515):0.08395605,((KF569996__Rhinolophus_affinis_coronavirus_isolate_LYRa11_:0.07693671,(AY390556__SARS_coronavirus_GZ02_[&Organism="SARS coronavirus GZ02","Genetic Code"="Standard",Taxonomy="Viruses; Riboviria; Nidovirales; Cornidovirineae; Coronaviridae; Orthocoronavirinae; Betacoronavirus; Sarbecovirus"]:0.01573351,(KY417146__Bat_SARS_like_coronavirus_isolate_Rs4231_:0.03649289,(KT444582__SARS_like_coronavirus_WIV16_:0.00179302,(KY417144__Bat_SARS_like_coronavirus_isolate_Rs4084_:0.03525145,KC881006__Bat_SARS_like_coronavirus_Rs3367_:0.000300):0.06859712):0.00877994):0.00639736):0.05531442):0.0865856,(FJ211860__Recombinant_coronavirus_clone_Bat_SRBD_spike_glycoprotein_gene_:0.0,(FJ211859__Recombinant_coronavirus_clone_Bat_SARS_CoV_:0.0,(DQ084199__bat_SARS_coronavirus_HKU3_2_:0.00173282,((DQ412043__Bat_SARS_coronavirus_Rm1_:0.02381798,'KJ473814__BtRs_BetaCoV/HuB2013_':0.1083355):0.00794363,(DQ071615__Bat_SARS_coronavirus_Rp3_:0.01265164,(KY417148__Bat_SARS_like_coronavirus_isolate_Rs4247_:0.000823,('MK211375__Coronavirus_BtRs_BetaCoV/YN2018A_':0.00182341,(KY417142__Bat_SARS_like_coronavirus_isolate_As6526_:0.00539528,'MK211378__Coronavirus_BtRs_BetaCoV/YN2018D_':0.06409792):0.00607177):0.0051006):0.00832658):0.00427125):0.02697406):0.0):0.05194744):0.11502165):0.20645914):0.10120368):0.09326482); tree bootstrap_36 = [&U] (MN996532__Bat_coronavirus_RaTG13_[&Organism="Bat coronavirus RaTG13","Genetic Code"="Standard",Taxonomy="Viruses; Riboviria; Nidovirales; Cornidovirineae; Coronaviridae; unclassified Coronaviridae"]:0.01676524,MN908947__Wuhan_seafood_market_pneumonia_virus_isolate_Wuhan_Hu_1_SARS_CoV_2_:0.00183732,(MT084071__Pangolin_coronavirus_isolate_MP789_[&"# Nucleotide Sequences With Mates"=0,Organism="Pangolin coronavirus",Description="Pangolin coronavirus isolate MP789 genomic sequence",Modified=Mon Mar 16 16:48:31 ECT 2020,"Genetic Code"="Standard",Taxonomy="Viruses; Riboviria; Nidovirales; Cornidovirineae; Coronaviridae; Orthocoronavirinae; Betacoronavirus; unclassified Betacoronavirus","Mean Coverage"=1.99039647870886,Topology="linear","Alignment method"="MAFFT Alignment",Created=Mon Mar 09 08:59:37 ECT 2020,URN="urn:local:.:caf-bnocubz","Free end gaps"=true,"Ref Seq Name"="","Molecule Type"="AA"]:0.01375893,((MG772934__Bat_SARS_like_coronavirus_isolate_bat_SL_CoVZXC21_:0.00781216,MG772933__Bat_SARS_like_coronavirus_isolate_bat_SL_CoVZC45_:0.00298299):0.09380941,((KF569996__Rhinolophus_affinis_coronavirus_isolate_LYRa11_:0.07797254,((KT444582__SARS_like_coronavirus_WIV16_:0.00473888,(KY417146__Bat_SARS_like_coronavirus_isolate_Rs4231_:0.02868251,AY390556__SARS_coronavirus_GZ02_[&Organism="SARS coronavirus GZ02","Genetic Code"="Standard",Taxonomy="Viruses; Riboviria; Nidovirales; Cornidovirineae; Coronaviridae; Orthocoronavirinae; Betacoronavirus; Sarbecovirus"]:0.02435606):0.000932):0.03198136,(KC881006__Bat_SARS_like_coronavirus_Rs3367_:0.000780,KY417144__Bat_SARS_like_coronavirus_isolate_Rs4084_:0.0257778):0.03687433):0.03963784):0.08140793,(FJ211860__Recombinant_coronavirus_clone_Bat_SRBD_spike_glycoprotein_gene_:0.00198586,((FJ211859__Recombinant_coronavirus_clone_Bat_SARS_CoV_:0.0,DQ084199__bat_SARS_coronavirus_HKU3_2_:0.000826):0.0,(((KY417142__Bat_SARS_like_coronavirus_isolate_As6526_:0.0152255,'MK211375__Coronavirus_BtRs_BetaCoV/YN2018A_':0.00251609):0.00398514,(KY417148__Bat_SARS_like_coronavirus_isolate_Rs4247_:0.0,('KJ473814__BtRs_BetaCoV/HuB2013_':0.08573091,'MK211378__Coronavirus_BtRs_BetaCoV/YN2018D_':0.04195129):0.02819906):0.000978):0.01037804,(DQ412043__Bat_SARS_coronavirus_Rm1_:0.03033281,DQ071615__Bat_SARS_coronavirus_Rp3_:0.00380609):0.00631154):0.02419053):0.06374642):0.07881194):0.1712072):0.05480055):0.08341218); tree bootstrap_37 = [&U] (MN908947__Wuhan_seafood_market_pneumonia_virus_isolate_Wuhan_Hu_1_SARS_CoV_2_:0.00535688,MN996532__Bat_coronavirus_RaTG13_[&Organism="Bat coronavirus RaTG13","Genetic Code"="Standard",Taxonomy="Viruses; Riboviria; Nidovirales; Cornidovirineae; Coronaviridae; unclassified Coronaviridae"]:0.01898494,((MT084071__Pangolin_coronavirus_isolate_MP789_[&"# Nucleotide Sequences With Mates"=0,Organism="Pangolin coronavirus",Description="Pangolin coronavirus isolate MP789 genomic sequence",Modified=Mon Mar 16 16:48:31 ECT 2020,"Genetic Code"="Standard",Taxonomy="Viruses; Riboviria; Nidovirales; Cornidovirineae; Coronaviridae; Orthocoronavirinae; Betacoronavirus; unclassified Betacoronavirus","Mean Coverage"=1.99039647870886,Topology="linear","Alignment method"="MAFFT Alignment",Created=Mon Mar 09 08:59:37 ECT 2020,URN="urn:local:.:caf-bnocubz","Free end gaps"=true,"Ref Seq Name"="","Molecule Type"="AA"]:0.02721557,(MG772933__Bat_SARS_like_coronavirus_isolate_bat_SL_CoVZC45_:0.00545966,MG772934__Bat_SARS_like_coronavirus_isolate_bat_SL_CoVZXC21_:0.00647224):0.11779878):0.05411933,((KF569996__Rhinolophus_affinis_coronavirus_isolate_LYRa11_:0.07644185,((KC881006__Bat_SARS_like_coronavirus_Rs3367_:0.0,KY417144__Bat_SARS_like_coronavirus_isolate_Rs4084_:0.02996914):0.04134498,(KT444582__SARS_like_coronavirus_WIV16_:0.0,(KY417146__Bat_SARS_like_coronavirus_isolate_Rs4231_:0.02832686,AY390556__SARS_coronavirus_GZ02_[&Organism="SARS coronavirus GZ02","Genetic Code"="Standard",Taxonomy="Viruses; Riboviria; Nidovirales; Cornidovirineae; Coronaviridae; Orthocoronavirinae; Betacoronavirus; Sarbecovirus"]:0.01843775):0.00648083):0.03418295):0.03247172):0.11566454,(FJ211860__Recombinant_coronavirus_clone_Bat_SRBD_spike_glycoprotein_gene_:0.00174749,((DQ084199__bat_SARS_coronavirus_HKU3_2_:0.00261388,FJ211859__Recombinant_coronavirus_clone_Bat_SARS_CoV_:0.0):0.0,(((KY417148__Bat_SARS_like_coronavirus_isolate_Rs4247_:0.0,('MK211378__Coronavirus_BtRs_BetaCoV/YN2018D_':0.03979253,'KJ473814__BtRs_BetaCoV/HuB2013_':0.09585587):0.03985186):0.00359541,('MK211375__Coronavirus_BtRs_BetaCoV/YN2018A_':0.00270006,KY417142__Bat_SARS_like_coronavirus_isolate_As6526_:0.00704134):0.00432693):0.0132416,(DQ071615__Bat_SARS_coronavirus_Rp3_:0.00916712,DQ412043__Bat_SARS_coronavirus_Rm1_:0.03235458):0.00573025):0.02698237):0.03825289):0.11348954):0.22612986):0.07090822); tree bootstrap_38 = [&U] (MN996532__Bat_coronavirus_RaTG13_[&Organism="Bat coronavirus RaTG13","Genetic Code"="Standard",Taxonomy="Viruses; Riboviria; Nidovirales; Cornidovirineae; Coronaviridae; unclassified Coronaviridae"]:0.02026115,MN908947__Wuhan_seafood_market_pneumonia_virus_isolate_Wuhan_Hu_1_SARS_CoV_2_:0.00524255,(MT084071__Pangolin_coronavirus_isolate_MP789_[&"# Nucleotide Sequences With Mates"=0,Organism="Pangolin coronavirus",Description="Pangolin coronavirus isolate MP789 genomic sequence",Modified=Mon Mar 16 16:48:31 ECT 2020,"Genetic Code"="Standard",Taxonomy="Viruses; Riboviria; Nidovirales; Cornidovirineae; Coronaviridae; Orthocoronavirinae; Betacoronavirus; unclassified Betacoronavirus","Mean Coverage"=1.99039647870886,Topology="linear","Alignment method"="MAFFT Alignment",Created=Mon Mar 09 08:59:37 ECT 2020,URN="urn:local:.:caf-bnocubz","Free end gaps"=true,"Ref Seq Name"="","Molecule Type"="AA"]:0.01584085,((MG772933__Bat_SARS_like_coronavirus_isolate_bat_SL_CoVZC45_:0.00313233,MG772934__Bat_SARS_like_coronavirus_isolate_bat_SL_CoVZXC21_:0.00855148):0.02535867,('KJ473814__BtRs_BetaCoV/HuB2013_':0.05339152,((DQ071615__Bat_SARS_coronavirus_Rp3_:0.00987894,DQ412043__Bat_SARS_coronavirus_Rm1_:0.02435624):0.00341699,(((FJ211860__Recombinant_coronavirus_clone_Bat_SRBD_spike_glycoprotein_gene_:0.0,(KF569996__Rhinolophus_affinis_coronavirus_isolate_LYRa11_:0.06946311,((KC881006__Bat_SARS_like_coronavirus_Rs3367_:0.000467,KY417144__Bat_SARS_like_coronavirus_isolate_Rs4084_:0.03122875):0.04793832,(AY390556__SARS_coronavirus_GZ02_[&Organism="SARS coronavirus GZ02","Genetic Code"="Standard",Taxonomy="Viruses; Riboviria; Nidovirales; Cornidovirineae; Coronaviridae; Orthocoronavirinae; Betacoronavirus; Sarbecovirus"]:0.01912931,(KT444582__SARS_like_coronavirus_WIV16_:0.000218,KY417146__Bat_SARS_like_coronavirus_isolate_Rs4231_:0.03357187):0.00240641):0.02368195):0.04390698):0.17376738):0.04733698,(DQ084199__bat_SARS_coronavirus_HKU3_2_:0.000810,FJ211859__Recombinant_coronavirus_clone_Bat_SARS_CoV_:0.0):0.0):0.01976894,(KY417148__Bat_SARS_like_coronavirus_isolate_Rs4247_:0.000971,('MK211375__Coronavirus_BtRs_BetaCoV/YN2018A_':0.0,('MK211378__Coronavirus_BtRs_BetaCoV/YN2018D_':0.06123514,KY417142__Bat_SARS_like_coronavirus_isolate_As6526_:0.00765192):0.00650567):0.00391474):0.01094349):0.00315392):0.040309):0.21455597):0.14105094):0.10003632); tree bootstrap_39 = [&U] (MN996532__Bat_coronavirus_RaTG13_[&Organism="Bat coronavirus RaTG13","Genetic Code"="Standard",Taxonomy="Viruses; Riboviria; Nidovirales; Cornidovirineae; Coronaviridae; unclassified Coronaviridae"]:0.02030045,MN908947__Wuhan_seafood_market_pneumonia_virus_isolate_Wuhan_Hu_1_SARS_CoV_2_:0.00444297,(MT084071__Pangolin_coronavirus_isolate_MP789_[&"# Nucleotide Sequences With Mates"=0,Organism="Pangolin coronavirus",Description="Pangolin coronavirus isolate MP789 genomic sequence",Modified=Mon Mar 16 16:48:31 ECT 2020,"Genetic Code"="Standard",Taxonomy="Viruses; Riboviria; Nidovirales; Cornidovirineae; Coronaviridae; Orthocoronavirinae; Betacoronavirus; unclassified Betacoronavirus","Mean Coverage"=1.99039647870886,Topology="linear","Alignment method"="MAFFT Alignment",Created=Mon Mar 09 08:59:37 ECT 2020,URN="urn:local:.:caf-bnocubz","Free end gaps"=true,"Ref Seq Name"="","Molecule Type"="AA"]:0.01145705,((MG772933__Bat_SARS_like_coronavirus_isolate_bat_SL_CoVZC45_:0.00298268,MG772934__Bat_SARS_like_coronavirus_isolate_bat_SL_CoVZXC21_:0.00652234):0.02667449,(((FJ211860__Recombinant_coronavirus_clone_Bat_SRBD_spike_glycoprotein_gene_:0.0,(KF569996__Rhinolophus_affinis_coronavirus_isolate_LYRa11_:0.05072805,(AY390556__SARS_coronavirus_GZ02_[&Organism="SARS coronavirus GZ02","Genetic Code"="Standard",Taxonomy="Viruses; Riboviria; Nidovirales; Cornidovirineae; Coronaviridae; Orthocoronavirinae; Betacoronavirus; Sarbecovirus"]:0.02086803,(KY417146__Bat_SARS_like_coronavirus_isolate_Rs4231_:0.04037381,(KT444582__SARS_like_coronavirus_WIV16_:0.0,(KC881006__Bat_SARS_like_coronavirus_Rs3367_:0.0,KY417144__Bat_SARS_like_coronavirus_isolate_Rs4084_:0.0379311):0.07406839):0.00855071):0.00457722):0.05065668):0.18290121):0.05506438,(FJ211859__Recombinant_coronavirus_clone_Bat_SARS_CoV_:0.0,DQ084199__bat_SARS_coronavirus_HKU3_2_:0.00256076):0.0):0.01788677,((DQ071615__Bat_SARS_coronavirus_Rp3_:0.01526767,DQ412043__Bat_SARS_coronavirus_Rm1_:0.03344468):0.00688486,((KY417142__Bat_SARS_like_coronavirus_isolate_As6526_:0.01312351,'MK211375__Coronavirus_BtRs_BetaCoV/YN2018A_':0.0):0.00513587,(KY417148__Bat_SARS_like_coronavirus_isolate_Rs4247_:0.0,('KJ473814__BtRs_BetaCoV/HuB2013_':0.08276654,'MK211378__Coronavirus_BtRs_BetaCoV/YN2018D_':0.04344032):0.03976611):0.000814):0.01128213):0.01133656):0.21802607):0.14852349):0.12298467); tree bootstrap_40 = [&U] (MN996532__Bat_coronavirus_RaTG13_[&Organism="Bat coronavirus RaTG13","Genetic Code"="Standard",Taxonomy="Viruses; Riboviria; Nidovirales; Cornidovirineae; Coronaviridae; unclassified Coronaviridae"]:0.01630363,MN908947__Wuhan_seafood_market_pneumonia_virus_isolate_Wuhan_Hu_1_SARS_CoV_2_:0.00816814,(MT084071__Pangolin_coronavirus_isolate_MP789_[&"# Nucleotide Sequences With Mates"=0,Organism="Pangolin coronavirus",Description="Pangolin coronavirus isolate MP789 genomic sequence",Modified=Mon Mar 16 16:48:31 ECT 2020,"Genetic Code"="Standard",Taxonomy="Viruses; Riboviria; Nidovirales; Cornidovirineae; Coronaviridae; Orthocoronavirinae; Betacoronavirus; unclassified Betacoronavirus","Mean Coverage"=1.99039647870886,Topology="linear","Alignment method"="MAFFT Alignment",Created=Mon Mar 09 08:59:37 ECT 2020,URN="urn:local:.:caf-bnocubz","Free end gaps"=true,"Ref Seq Name"="","Molecule Type"="AA"]:0.00647254,((MG772934__Bat_SARS_like_coronavirus_isolate_bat_SL_CoVZXC21_:0.004272,MG772933__Bat_SARS_like_coronavirus_isolate_bat_SL_CoVZC45_:0.00807864):0.02217844,('KJ473814__BtRs_BetaCoV/HuB2013_':0.06555375,('MK211378__Coronavirus_BtRs_BetaCoV/YN2018D_':0.04972301,(KY417148__Bat_SARS_like_coronavirus_isolate_Rs4247_:0.0,(((DQ084199__bat_SARS_coronavirus_HKU3_2_:0.00170554,(FJ211859__Recombinant_coronavirus_clone_Bat_SARS_CoV_:0.0,(FJ211860__Recombinant_coronavirus_clone_Bat_SRBD_spike_glycoprotein_gene_:0.000995,(KF569996__Rhinolophus_affinis_coronavirus_isolate_LYRa11_:0.0711564,(AY390556__SARS_coronavirus_GZ02_[&Organism="SARS coronavirus GZ02","Genetic Code"="Standard",Taxonomy="Viruses; Riboviria; Nidovirales; Cornidovirineae; Coronaviridae; Orthocoronavirinae; Betacoronavirus; Sarbecovirus"]:0.03174271,(KY417146__Bat_SARS_like_coronavirus_isolate_Rs4231_:0.03612092,(KT444582__SARS_like_coronavirus_WIV16_:0.0,(KC881006__Bat_SARS_like_coronavirus_Rs3367_:0.0,KY417144__Bat_SARS_like_coronavirus_isolate_Rs4084_:0.03155038):0.06861423):0.00600826):0.00667697):0.0297605):0.18416771):0.04888379):0.0):0.02714711,(DQ071615__Bat_SARS_coronavirus_Rp3_:0.01528463,DQ412043__Bat_SARS_coronavirus_Rm1_:0.0275692):0.00992879):0.00666104,('MK211375__Coronavirus_BtRs_BetaCoV/YN2018A_':0.000884,KY417142__Bat_SARS_like_coronavirus_isolate_As6526_:0.02057909):0.00673705):0.00181149):0.02514307):0.05404235):0.20922478):0.17319355):0.11556633); tree bootstrap_41 = [&U] (MN996532__Bat_coronavirus_RaTG13_[&Organism="Bat coronavirus RaTG13","Genetic Code"="Standard",Taxonomy="Viruses; Riboviria; Nidovirales; Cornidovirineae; Coronaviridae; unclassified Coronaviridae"]:0.02326273,MN908947__Wuhan_seafood_market_pneumonia_virus_isolate_Wuhan_Hu_1_SARS_CoV_2_:0.00432305,(MT084071__Pangolin_coronavirus_isolate_MP789_[&"# Nucleotide Sequences With Mates"=0,Organism="Pangolin coronavirus",Description="Pangolin coronavirus isolate MP789 genomic sequence",Modified=Mon Mar 16 16:48:31 ECT 2020,"Genetic Code"="Standard",Taxonomy="Viruses; Riboviria; Nidovirales; Cornidovirineae; Coronaviridae; Orthocoronavirinae; Betacoronavirus; unclassified Betacoronavirus","Mean Coverage"=1.99039647870886,Topology="linear","Alignment method"="MAFFT Alignment",Created=Mon Mar 09 08:59:37 ECT 2020,URN="urn:local:.:caf-bnocubz","Free end gaps"=true,"Ref Seq Name"="","Molecule Type"="AA"]:0.01817875,((MG772933__Bat_SARS_like_coronavirus_isolate_bat_SL_CoVZC45_:0.00593979,MG772934__Bat_SARS_like_coronavirus_isolate_bat_SL_CoVZXC21_:0.01060314):0.01996397,(((FJ211860__Recombinant_coronavirus_clone_Bat_SRBD_spike_glycoprotein_gene_:0.0,(KF569996__Rhinolophus_affinis_coronavirus_isolate_LYRa11_:0.04798088,((KC881006__Bat_SARS_like_coronavirus_Rs3367_:0.0,KY417144__Bat_SARS_like_coronavirus_isolate_Rs4084_:0.03488032):0.04140633,(KT444582__SARS_like_coronavirus_WIV16_:0.0,(KY417146__Bat_SARS_like_coronavirus_isolate_Rs4231_:0.03554913,AY390556__SARS_coronavirus_GZ02_[&Organism="SARS coronavirus GZ02","Genetic Code"="Standard",Taxonomy="Viruses; Riboviria; Nidovirales; Cornidovirineae; Coronaviridae; Orthocoronavirinae; Betacoronavirus; Sarbecovirus"]:0.0185839):0.00424575):0.03545564):0.0493083):0.17859696):0.06101212,(FJ211859__Recombinant_coronavirus_clone_Bat_SARS_CoV_:0.0,DQ084199__bat_SARS_coronavirus_HKU3_2_:0.0):0.0):0.00297375,((KY417148__Bat_SARS_like_coronavirus_isolate_Rs4247_:0.0,('MK211378__Coronavirus_BtRs_BetaCoV/YN2018D_':0.04773031,'KJ473814__BtRs_BetaCoV/HuB2013_':0.09113203):0.02651706):0.00218548,('MK211375__Coronavirus_BtRs_BetaCoV/YN2018A_':0.0,(KY417142__Bat_SARS_like_coronavirus_isolate_As6526_:0.00866866,(DQ071615__Bat_SARS_coronavirus_Rp3_:0.00868819,DQ412043__Bat_SARS_coronavirus_Rm1_:0.02931531):0.00702857):0.00816186):0.0053576):0.02698323):0.25694032):0.16902484):0.11025203); tree bootstrap_42 = [&U] (MN996532__Bat_coronavirus_RaTG13_[&Organism="Bat coronavirus RaTG13","Genetic Code"="Standard",Taxonomy="Viruses; Riboviria; Nidovirales; Cornidovirineae; Coronaviridae; unclassified Coronaviridae"]:0.02256046,MN908947__Wuhan_seafood_market_pneumonia_virus_isolate_Wuhan_Hu_1_SARS_CoV_2_:0.00365639,(MT084071__Pangolin_coronavirus_isolate_MP789_[&"# Nucleotide Sequences With Mates"=0,Organism="Pangolin coronavirus",Description="Pangolin coronavirus isolate MP789 genomic sequence",Modified=Mon Mar 16 16:48:31 ECT 2020,"Genetic Code"="Standard",Taxonomy="Viruses; Riboviria; Nidovirales; Cornidovirineae; Coronaviridae; Orthocoronavirinae; Betacoronavirus; unclassified Betacoronavirus","Mean Coverage"=1.99039647870886,Topology="linear","Alignment method"="MAFFT Alignment",Created=Mon Mar 09 08:59:37 ECT 2020,URN="urn:local:.:caf-bnocubz","Free end gaps"=true,"Ref Seq Name"="","Molecule Type"="AA"]:0.01732384,((MG772934__Bat_SARS_like_coronavirus_isolate_bat_SL_CoVZXC21_:0.00849822,MG772933__Bat_SARS_like_coronavirus_isolate_bat_SL_CoVZC45_:0.00938013):0.09618091,((KF569996__Rhinolophus_affinis_coronavirus_isolate_LYRa11_:0.06821297,((KC881006__Bat_SARS_like_coronavirus_Rs3367_:0.00255361,KY417144__Bat_SARS_like_coronavirus_isolate_Rs4084_:0.03219415):0.07682591,(AY390556__SARS_coronavirus_GZ02_[&Organism="SARS coronavirus GZ02","Genetic Code"="Standard",Taxonomy="Viruses; Riboviria; Nidovirales; Cornidovirineae; Coronaviridae; Orthocoronavirinae; Betacoronavirus; Sarbecovirus"]:0.02186452,(KY417146__Bat_SARS_like_coronavirus_isolate_Rs4231_:0.03067172,KT444582__SARS_like_coronavirus_WIV16_:0.00415871):0.00450256):0.02333965):0.04587532):0.09360514,(FJ211860__Recombinant_coronavirus_clone_Bat_SRBD_spike_glycoprotein_gene_:0.00186197,((FJ211859__Recombinant_coronavirus_clone_Bat_SARS_CoV_:0.0,DQ084199__bat_SARS_coronavirus_HKU3_2_:0.0):0.0,(((KY417142__Bat_SARS_like_coronavirus_isolate_As6526_:0.01209423,'MK211375__Coronavirus_BtRs_BetaCoV/YN2018A_':0.00255189):0.00230264,(KY417148__Bat_SARS_like_coronavirus_isolate_Rs4247_:0.0,('KJ473814__BtRs_BetaCoV/HuB2013_':0.10873569,'MK211378__Coronavirus_BtRs_BetaCoV/YN2018D_':0.04540698):0.03580295):0.00192497):0.00791938,(DQ071615__Bat_SARS_coronavirus_Rp3_:0.01191186,DQ412043__Bat_SARS_coronavirus_Rm1_:0.02487172):0.00519672):0.02418142):0.06214287):0.09142164):0.22671251):0.05279856):0.10798226); tree bootstrap_43 = [&U] (MN908947__Wuhan_seafood_market_pneumonia_virus_isolate_Wuhan_Hu_1_SARS_CoV_2_:0.00355525,MN996532__Bat_coronavirus_RaTG13_[&Organism="Bat coronavirus RaTG13","Genetic Code"="Standard",Taxonomy="Viruses; Riboviria; Nidovirales; Cornidovirineae; Coronaviridae; unclassified Coronaviridae"]:0.02078767,(MT084071__Pangolin_coronavirus_isolate_MP789_[&"# Nucleotide Sequences With Mates"=0,Organism="Pangolin coronavirus",Description="Pangolin coronavirus isolate MP789 genomic sequence",Modified=Mon Mar 16 16:48:31 ECT 2020,"Genetic Code"="Standard",Taxonomy="Viruses; Riboviria; Nidovirales; Cornidovirineae; Coronaviridae; Orthocoronavirinae; Betacoronavirus; unclassified Betacoronavirus","Mean Coverage"=1.99039647870886,Topology="linear","Alignment method"="MAFFT Alignment",Created=Mon Mar 09 08:59:37 ECT 2020,URN="urn:local:.:caf-bnocubz","Free end gaps"=true,"Ref Seq Name"="","Molecule Type"="AA"]:0.017885,((MG772933__Bat_SARS_like_coronavirus_isolate_bat_SL_CoVZC45_:0.00390748,MG772934__Bat_SARS_like_coronavirus_isolate_bat_SL_CoVZXC21_:0.00668962):0.01496945,('KJ473814__BtRs_BetaCoV/HuB2013_':0.05961976,('MK211378__Coronavirus_BtRs_BetaCoV/YN2018D_':0.06929388,(DQ412043__Bat_SARS_coronavirus_Rm1_:0.01676126,(DQ071615__Bat_SARS_coronavirus_Rp3_:0.01177047,(((FJ211860__Recombinant_coronavirus_clone_Bat_SRBD_spike_glycoprotein_gene_:0.00196961,(KF569996__Rhinolophus_affinis_coronavirus_isolate_LYRa11_:0.06654235,((KY417144__Bat_SARS_like_coronavirus_isolate_Rs4084_:0.04174684,KC881006__Bat_SARS_like_coronavirus_Rs3367_:0.00125655):0.04969538,(KT444582__SARS_like_coronavirus_WIV16_:0.00296401,(KY417146__Bat_SARS_like_coronavirus_isolate_Rs4231_:0.04142671,AY390556__SARS_coronavirus_GZ02_[&Organism="SARS coronavirus GZ02","Genetic Code"="Standard",Taxonomy="Viruses; Riboviria; Nidovirales; Cornidovirineae; Coronaviridae; Orthocoronavirinae; Betacoronavirus; Sarbecovirus"]:0.02729852):0.00712371):0.04068955):0.06807003):0.1926531):0.05910849,(DQ084199__bat_SARS_coronavirus_HKU3_2_:0.00259908,FJ211859__Recombinant_coronavirus_clone_Bat_SARS_CoV_:0.0):0.0):0.02510252,(KY417148__Bat_SARS_like_coronavirus_isolate_Rs4247_:0.000729,('MK211375__Coronavirus_BtRs_BetaCoV/YN2018A_':0.000820,KY417142__Bat_SARS_like_coronavirus_isolate_As6526_:0.01251337):0.00717621):0.00757414):0.00528283):0.0125994):0.03299651):0.03687397):0.22476972):0.17931718):0.11441926); tree bootstrap_44 = [&U] (MN908947__Wuhan_seafood_market_pneumonia_virus_isolate_Wuhan_Hu_1_SARS_CoV_2_:0.00531489,MN996532__Bat_coronavirus_RaTG13_[&Organism="Bat coronavirus RaTG13","Genetic Code"="Standard",Taxonomy="Viruses; Riboviria; Nidovirales; Cornidovirineae; Coronaviridae; unclassified Coronaviridae"]:0.01917508,(MT084071__Pangolin_coronavirus_isolate_MP789_[&"# Nucleotide Sequences With Mates"=0,Organism="Pangolin coronavirus",Description="Pangolin coronavirus isolate MP789 genomic sequence",Modified=Mon Mar 16 16:48:31 ECT 2020,"Genetic Code"="Standard",Taxonomy="Viruses; Riboviria; Nidovirales; Cornidovirineae; Coronaviridae; Orthocoronavirinae; Betacoronavirus; unclassified Betacoronavirus","Mean Coverage"=1.99039647870886,Topology="linear","Alignment method"="MAFFT Alignment",Created=Mon Mar 09 08:59:37 ECT 2020,URN="urn:local:.:caf-bnocubz","Free end gaps"=true,"Ref Seq Name"="","Molecule Type"="AA"]:0.01295515,((MG772934__Bat_SARS_like_coronavirus_isolate_bat_SL_CoVZXC21_:0.00697223,MG772933__Bat_SARS_like_coronavirus_isolate_bat_SL_CoVZC45_:0.0079581):0.01677235,('KJ473814__BtRs_BetaCoV/HuB2013_':0.08309066,((DQ084199__bat_SARS_coronavirus_HKU3_2_:0.000808,(FJ211859__Recombinant_coronavirus_clone_Bat_SARS_CoV_:0.0,(FJ211860__Recombinant_coronavirus_clone_Bat_SRBD_spike_glycoprotein_gene_:0.000790,(KF569996__Rhinolophus_affinis_coronavirus_isolate_LYRa11_:0.05564579,((KY417144__Bat_SARS_like_coronavirus_isolate_Rs4084_:0.04006679,KC881006__Bat_SARS_like_coronavirus_Rs3367_:0.00162657):0.06027851,(AY390556__SARS_coronavirus_GZ02_[&Organism="SARS coronavirus GZ02","Genetic Code"="Standard",Taxonomy="Viruses; Riboviria; Nidovirales; Cornidovirineae; Coronaviridae; Orthocoronavirinae; Betacoronavirus; Sarbecovirus"]:0.01840803,(KT444582__SARS_like_coronavirus_WIV16_:0.00297418,KY417146__Bat_SARS_like_coronavirus_isolate_Rs4231_:0.04140626):0.00274173):0.03554017):0.05198079):0.21668536):0.05814745):0.0):0.02627213,((KY417148__Bat_SARS_like_coronavirus_isolate_Rs4247_:0.00275763,('MK211375__Coronavirus_BtRs_BetaCoV/YN2018A_':0.00180132,('MK211378__Coronavirus_BtRs_BetaCoV/YN2018D_':0.07879921,KY417142__Bat_SARS_like_coronavirus_isolate_As6526_:0.00651195):0.0107075):0.00353641):0.01251429,(DQ412043__Bat_SARS_coronavirus_Rm1_:0.03993856,DQ071615__Bat_SARS_coronavirus_Rp3_:0.00862371):0.00791301):0.000920):0.06140519):0.21118642):0.16632758):0.13921824); tree bootstrap_45 = [&U] (MN996532__Bat_coronavirus_RaTG13_[&Organism="Bat coronavirus RaTG13","Genetic Code"="Standard",Taxonomy="Viruses; Riboviria; Nidovirales; Cornidovirineae; Coronaviridae; unclassified Coronaviridae"]:0.01889077,MN908947__Wuhan_seafood_market_pneumonia_virus_isolate_Wuhan_Hu_1_SARS_CoV_2_:0.00280036,(MT084071__Pangolin_coronavirus_isolate_MP789_[&"# Nucleotide Sequences With Mates"=0,Organism="Pangolin coronavirus",Description="Pangolin coronavirus isolate MP789 genomic sequence",Modified=Mon Mar 16 16:48:31 ECT 2020,"Genetic Code"="Standard",Taxonomy="Viruses; Riboviria; Nidovirales; Cornidovirineae; Coronaviridae; Orthocoronavirinae; Betacoronavirus; unclassified Betacoronavirus","Mean Coverage"=1.99039647870886,Topology="linear","Alignment method"="MAFFT Alignment",Created=Mon Mar 09 08:59:37 ECT 2020,URN="urn:local:.:caf-bnocubz","Free end gaps"=true,"Ref Seq Name"="","Molecule Type"="AA"]:0.01650081,((MG772934__Bat_SARS_like_coronavirus_isolate_bat_SL_CoVZXC21_:0.00529372,MG772933__Bat_SARS_like_coronavirus_isolate_bat_SL_CoVZC45_:0.00492328):0.01963212,('KJ473814__BtRs_BetaCoV/HuB2013_':0.07061322,(DQ412043__Bat_SARS_coronavirus_Rm1_:0.01669898,(DQ071615__Bat_SARS_coronavirus_Rp3_:0.00910184,(((FJ211860__Recombinant_coronavirus_clone_Bat_SRBD_spike_glycoprotein_gene_:0.00156623,(KF569996__Rhinolophus_affinis_coronavirus_isolate_LYRa11_:0.04447263,((KY417144__Bat_SARS_like_coronavirus_isolate_Rs4084_:0.03738535,KC881006__Bat_SARS_like_coronavirus_Rs3367_:0.00108734):0.05790258,(KT444582__SARS_like_coronavirus_WIV16_:0.00469327,(AY390556__SARS_coronavirus_GZ02_[&Organism="SARS coronavirus GZ02","Genetic Code"="Standard",Taxonomy="Viruses; Riboviria; Nidovirales; Cornidovirineae; Coronaviridae; Orthocoronavirinae; Betacoronavirus; Sarbecovirus"]:0.02354312,KY417146__Bat_SARS_like_coronavirus_isolate_Rs4231_:0.03710484):0.00496897):0.03331448):0.04438501):0.2015359):0.0646818,(DQ084199__bat_SARS_coronavirus_HKU3_2_:0.000837,FJ211859__Recombinant_coronavirus_clone_Bat_SARS_CoV_:0.0):0.0):0.01594249,((KY417148__Bat_SARS_like_coronavirus_isolate_Rs4247_:0.0,'MK211378__Coronavirus_BtRs_BetaCoV/YN2018D_':0.07393784):0.00297663,('MK211375__Coronavirus_BtRs_BetaCoV/YN2018A_':0.000822,KY417142__Bat_SARS_like_coronavirus_isolate_As6526_:0.01277214):0.00460013):0.00945588):0.00853215):0.01079353):0.05863339):0.23647653):0.1471111):0.11166639); tree bootstrap_46 = [&U] (MN996532__Bat_coronavirus_RaTG13_[&Organism="Bat coronavirus RaTG13","Genetic Code"="Standard",Taxonomy="Viruses; Riboviria; Nidovirales; Cornidovirineae; Coronaviridae; unclassified Coronaviridae"]:0.01845037,MN908947__Wuhan_seafood_market_pneumonia_virus_isolate_Wuhan_Hu_1_SARS_CoV_2_:0.00857272,(MT084071__Pangolin_coronavirus_isolate_MP789_[&"# Nucleotide Sequences With Mates"=0,Organism="Pangolin coronavirus",Description="Pangolin coronavirus isolate MP789 genomic sequence",Modified=Mon Mar 16 16:48:31 ECT 2020,"Genetic Code"="Standard",Taxonomy="Viruses; Riboviria; Nidovirales; Cornidovirineae; Coronaviridae; Orthocoronavirinae; Betacoronavirus; unclassified Betacoronavirus","Mean Coverage"=1.99039647870886,Topology="linear","Alignment method"="MAFFT Alignment",Created=Mon Mar 09 08:59:37 ECT 2020,URN="urn:local:.:caf-bnocubz","Free end gaps"=true,"Ref Seq Name"="","Molecule Type"="AA"]:0.00430291,((MG772933__Bat_SARS_like_coronavirus_isolate_bat_SL_CoVZC45_:0.00441469,MG772934__Bat_SARS_like_coronavirus_isolate_bat_SL_CoVZXC21_:0.01282217):0.01311256,('KJ473814__BtRs_BetaCoV/HuB2013_':0.05995943,(DQ412043__Bat_SARS_coronavirus_Rm1_:0.01752037,(DQ071615__Bat_SARS_coronavirus_Rp3_:0.00916577,((KY417142__Bat_SARS_like_coronavirus_isolate_As6526_:0.0070993,'MK211378__Coronavirus_BtRs_BetaCoV/YN2018D_':0.06453488):0.00540923,('MK211375__Coronavirus_BtRs_BetaCoV/YN2018A_':0.00102496,(KY417148__Bat_SARS_like_coronavirus_isolate_Rs4247_:0.0025592,(DQ084199__bat_SARS_coronavirus_HKU3_2_:0.0,(FJ211859__Recombinant_coronavirus_clone_Bat_SARS_CoV_:0.0,(FJ211860__Recombinant_coronavirus_clone_Bat_SRBD_spike_glycoprotein_gene_:0.0,(KF569996__Rhinolophus_affinis_coronavirus_isolate_LYRa11_:0.0500008,((KC881006__Bat_SARS_like_coronavirus_Rs3367_:0.00160464,KY417144__Bat_SARS_like_coronavirus_isolate_Rs4084_:0.02798417):0.05219979,(AY390556__SARS_coronavirus_GZ02_[&Organism="SARS coronavirus GZ02","Genetic Code"="Standard",Taxonomy="Viruses; Riboviria; Nidovirales; Cornidovirineae; Coronaviridae; Orthocoronavirinae; Betacoronavirus; Sarbecovirus"]:0.01733382,(KY417146__Bat_SARS_like_coronavirus_isolate_Rs4231_:0.02935422,KT444582__SARS_like_coronavirus_WIV16_:0.00278498):0.00601043):0.01682144):0.04964211):0.15988923):0.05435893):0.0):0.03374242):0.00301333):0.00529393):0.01208831):0.01249627):0.04740245):0.19981375):0.16050755):0.10098087); tree bootstrap_47 = [&U] (MN908947__Wuhan_seafood_market_pneumonia_virus_isolate_Wuhan_Hu_1_SARS_CoV_2_:0.00502948,MN996532__Bat_coronavirus_RaTG13_[&Organism="Bat coronavirus RaTG13","Genetic Code"="Standard",Taxonomy="Viruses; Riboviria; Nidovirales; Cornidovirineae; Coronaviridae; unclassified Coronaviridae"]:0.01501601,(MT084071__Pangolin_coronavirus_isolate_MP789_[&"# Nucleotide Sequences With Mates"=0,Organism="Pangolin coronavirus",Description="Pangolin coronavirus isolate MP789 genomic sequence",Modified=Mon Mar 16 16:48:31 ECT 2020,"Genetic Code"="Standard",Taxonomy="Viruses; Riboviria; Nidovirales; Cornidovirineae; Coronaviridae; Orthocoronavirinae; Betacoronavirus; unclassified Betacoronavirus","Mean Coverage"=1.99039647870886,Topology="linear","Alignment method"="MAFFT Alignment",Created=Mon Mar 09 08:59:37 ECT 2020,URN="urn:local:.:caf-bnocubz","Free end gaps"=true,"Ref Seq Name"="","Molecule Type"="AA"]:0.01216924,((MG772933__Bat_SARS_like_coronavirus_isolate_bat_SL_CoVZC45_:0.00658112,MG772934__Bat_SARS_like_coronavirus_isolate_bat_SL_CoVZXC21_:0.01046112):0.02196754,((KF569996__Rhinolophus_affinis_coronavirus_isolate_LYRa11_:0.05572688,((KC881006__Bat_SARS_like_coronavirus_Rs3367_:0.000553,KY417144__Bat_SARS_like_coronavirus_isolate_Rs4084_:0.03512279):0.04219342,(AY390556__SARS_coronavirus_GZ02_[&Organism="SARS coronavirus GZ02","Genetic Code"="Standard",Taxonomy="Viruses; Riboviria; Nidovirales; Cornidovirineae; Coronaviridae; Orthocoronavirinae; Betacoronavirus; Sarbecovirus"]:0.0262876,(KT444582__SARS_like_coronavirus_WIV16_:0.00153138,KY417146__Bat_SARS_like_coronavirus_isolate_Rs4231_:0.03705784):0.00456261):0.02282832):0.04002967):0.13961333,('KJ473814__BtRs_BetaCoV/HuB2013_':0.05445165,('MK211378__Coronavirus_BtRs_BetaCoV/YN2018D_':0.05303187,(DQ412043__Bat_SARS_coronavirus_Rm1_:0.00778895,(DQ071615__Bat_SARS_coronavirus_Rp3_:0.00931348,((FJ211860__Recombinant_coronavirus_clone_Bat_SRBD_spike_glycoprotein_gene_:0.04159381,(FJ211859__Recombinant_coronavirus_clone_Bat_SARS_CoV_:0.0,DQ084199__bat_SARS_coronavirus_HKU3_2_:0.000829):0.0):0.03166434,(KY417148__Bat_SARS_like_coronavirus_isolate_Rs4247_:0.000803,('MK211375__Coronavirus_BtRs_BetaCoV/YN2018A_':0.000804,KY417142__Bat_SARS_like_coronavirus_isolate_As6526_:0.01186643):0.00589674):0.00956019):0.00528183):0.0163916):0.03792481):0.04135224):0.0272431):0.19372974):0.1254853):0.12955455); tree bootstrap_48 = [&U] (MN908947__Wuhan_seafood_market_pneumonia_virus_isolate_Wuhan_Hu_1_SARS_CoV_2_:0.00651493,MN996532__Bat_coronavirus_RaTG13_[&Organism="Bat coronavirus RaTG13","Genetic Code"="Standard",Taxonomy="Viruses; Riboviria; Nidovirales; Cornidovirineae; Coronaviridae; unclassified Coronaviridae"]:0.02158713,(MT084071__Pangolin_coronavirus_isolate_MP789_[&"# Nucleotide Sequences With Mates"=0,Organism="Pangolin coronavirus",Description="Pangolin coronavirus isolate MP789 genomic sequence",Modified=Mon Mar 16 16:48:31 ECT 2020,"Genetic Code"="Standard",Taxonomy="Viruses; Riboviria; Nidovirales; Cornidovirineae; Coronaviridae; Orthocoronavirinae; Betacoronavirus; unclassified Betacoronavirus","Mean Coverage"=1.99039647870886,Topology="linear","Alignment method"="MAFFT Alignment",Created=Mon Mar 09 08:59:37 ECT 2020,URN="urn:local:.:caf-bnocubz","Free end gaps"=true,"Ref Seq Name"="","Molecule Type"="AA"]:0.02830797,((MG772934__Bat_SARS_like_coronavirus_isolate_bat_SL_CoVZXC21_:0.01045988,MG772933__Bat_SARS_like_coronavirus_isolate_bat_SL_CoVZC45_:0.00277702):0.10693346,((KF569996__Rhinolophus_affinis_coronavirus_isolate_LYRa11_:0.07032653,(AY390556__SARS_coronavirus_GZ02_[&Organism="SARS coronavirus GZ02","Genetic Code"="Standard",Taxonomy="Viruses; Riboviria; Nidovirales; Cornidovirineae; Coronaviridae; Orthocoronavirinae; Betacoronavirus; Sarbecovirus"]:0.0146001,(KY417146__Bat_SARS_like_coronavirus_isolate_Rs4231_:0.0370645,(KT444582__SARS_like_coronavirus_WIV16_:0.0,(KY417144__Bat_SARS_like_coronavirus_isolate_Rs4084_:0.03359556,KC881006__Bat_SARS_like_coronavirus_Rs3367_:0.0):0.07297241):0.00542407):0.00705259):0.04967033):0.10125346,(FJ211860__Recombinant_coronavirus_clone_Bat_SRBD_spike_glycoprotein_gene_:0.000975,(DQ084199__bat_SARS_coronavirus_HKU3_2_:0.000857,(FJ211859__Recombinant_coronavirus_clone_Bat_SARS_CoV_:0.0,(KY417148__Bat_SARS_like_coronavirus_isolate_Rs4247_:0.000612,('MK211375__Coronavirus_BtRs_BetaCoV/YN2018A_':0.00194195,(KY417142__Bat_SARS_like_coronavirus_isolate_As6526_:0.01289996,(DQ071615__Bat_SARS_coronavirus_Rp3_:0.01756823,(DQ412043__Bat_SARS_coronavirus_Rm1_:0.03016696,('MK211378__Coronavirus_BtRs_BetaCoV/YN2018D_':0.05875664,'KJ473814__BtRs_BetaCoV/HuB2013_':0.10541927):0.02725756):0.0144945):0.00820851):0.00834317):0.00520622):0.04108947):0.0):0.0546764):0.10753291):0.18481109):0.07825202):0.09201777); tree bootstrap_49 = [&U] (MN908947__Wuhan_seafood_market_pneumonia_virus_isolate_Wuhan_Hu_1_SARS_CoV_2_:0.00259631,MN996532__Bat_coronavirus_RaTG13_[&Organism="Bat coronavirus RaTG13","Genetic Code"="Standard",Taxonomy="Viruses; Riboviria; Nidovirales; Cornidovirineae; Coronaviridae; unclassified Coronaviridae"]:0.0128768,(MT084071__Pangolin_coronavirus_isolate_MP789_[&"# Nucleotide Sequences With Mates"=0,Organism="Pangolin coronavirus",Description="Pangolin coronavirus isolate MP789 genomic sequence",Modified=Mon Mar 16 16:48:31 ECT 2020,"Genetic Code"="Standard",Taxonomy="Viruses; Riboviria; Nidovirales; Cornidovirineae; Coronaviridae; Orthocoronavirinae; Betacoronavirus; unclassified Betacoronavirus","Mean Coverage"=1.99039647870886,Topology="linear","Alignment method"="MAFFT Alignment",Created=Mon Mar 09 08:59:37 ECT 2020,URN="urn:local:.:caf-bnocubz","Free end gaps"=true,"Ref Seq Name"="","Molecule Type"="AA"]:0.00181063,((MG772933__Bat_SARS_like_coronavirus_isolate_bat_SL_CoVZC45_:0.00345324,MG772934__Bat_SARS_like_coronavirus_isolate_bat_SL_CoVZXC21_:0.00967647):0.02674567,('KJ473814__BtRs_BetaCoV/HuB2013_':0.08022199,('MK211378__Coronavirus_BtRs_BetaCoV/YN2018D_':0.03819743,(KY417148__Bat_SARS_like_coronavirus_isolate_Rs4247_:0.0,('MK211375__Coronavirus_BtRs_BetaCoV/YN2018A_':0.00178631,(KY417142__Bat_SARS_like_coronavirus_isolate_As6526_:0.00972473,(DQ071615__Bat_SARS_coronavirus_Rp3_:0.00890414,(DQ412043__Bat_SARS_coronavirus_Rm1_:0.03107837,((FJ211860__Recombinant_coronavirus_clone_Bat_SRBD_spike_glycoprotein_gene_:0.0,(KF569996__Rhinolophus_affinis_coronavirus_isolate_LYRa11_:0.07328772,((AY390556__SARS_coronavirus_GZ02_[&Organism="SARS coronavirus GZ02","Genetic Code"="Standard",Taxonomy="Viruses; Riboviria; Nidovirales; Cornidovirineae; Coronaviridae; Orthocoronavirinae; Betacoronavirus; Sarbecovirus"]:0.02426175,(KT444582__SARS_like_coronavirus_WIV16_:0.0,KY417146__Bat_SARS_like_coronavirus_isolate_Rs4231_:0.03044959):0.00493918):0.03418935,(KY417144__Bat_SARS_like_coronavirus_isolate_Rs4084_:0.0274946,KC881006__Bat_SARS_like_coronavirus_Rs3367_:0.0):0.05260944):0.04298135):0.17743672):0.04610408,(DQ084199__bat_SARS_coronavirus_HKU3_2_:0.00326153,FJ211859__Recombinant_coronavirus_clone_Bat_SARS_CoV_:0.0):0.0):0.02867627):0.0063449):0.01471277):0.00314622):0.0022632):0.03440636):0.05139204):0.21519495):0.12650153):0.12632877); tree bootstrap_50 = [&U] (MN996532__Bat_coronavirus_RaTG13_[&Organism="Bat coronavirus RaTG13","Genetic Code"="Standard",Taxonomy="Viruses; Riboviria; Nidovirales; Cornidovirineae; Coronaviridae; unclassified Coronaviridae"]:0.02383929,MN908947__Wuhan_seafood_market_pneumonia_virus_isolate_Wuhan_Hu_1_SARS_CoV_2_:0.00464325,(MT084071__Pangolin_coronavirus_isolate_MP789_[&"# Nucleotide Sequences With Mates"=0,Organism="Pangolin coronavirus",Description="Pangolin coronavirus isolate MP789 genomic sequence",Modified=Mon Mar 16 16:48:31 ECT 2020,"Genetic Code"="Standard",Taxonomy="Viruses; Riboviria; Nidovirales; Cornidovirineae; Coronaviridae; Orthocoronavirinae; Betacoronavirus; unclassified Betacoronavirus","Mean Coverage"=1.99039647870886,Topology="linear","Alignment method"="MAFFT Alignment",Created=Mon Mar 09 08:59:37 ECT 2020,URN="urn:local:.:caf-bnocubz","Free end gaps"=true,"Ref Seq Name"="","Molecule Type"="AA"]:0.01883134,((MG772933__Bat_SARS_like_coronavirus_isolate_bat_SL_CoVZC45_:0.00515104,MG772934__Bat_SARS_like_coronavirus_isolate_bat_SL_CoVZXC21_:0.00902512):0.01614374,('KJ473814__BtRs_BetaCoV/HuB2013_':0.05135974,('MK211378__Coronavirus_BtRs_BetaCoV/YN2018D_':0.04141984,(KY417148__Bat_SARS_like_coronavirus_isolate_Rs4247_:0.0,('MK211375__Coronavirus_BtRs_BetaCoV/YN2018A_':0.000948,(KY417142__Bat_SARS_like_coronavirus_isolate_As6526_:0.00876744,(((FJ211860__Recombinant_coronavirus_clone_Bat_SRBD_spike_glycoprotein_gene_:0.0024978,(KF569996__Rhinolophus_affinis_coronavirus_isolate_LYRa11_:0.05976898,((KT444582__SARS_like_coronavirus_WIV16_:0.00803573,(KY417146__Bat_SARS_like_coronavirus_isolate_Rs4231_:0.0395022,AY390556__SARS_coronavirus_GZ02_[&Organism="SARS coronavirus GZ02","Genetic Code"="Standard",Taxonomy="Viruses; Riboviria; Nidovirales; Cornidovirineae; Coronaviridae; Orthocoronavirinae; Betacoronavirus; Sarbecovirus"]:0.02245593):0.00327735):0.02589624,(KC881006__Bat_SARS_like_coronavirus_Rs3367_:0.00735496,KY417144__Bat_SARS_like_coronavirus_isolate_Rs4084_:0.03904925):0.0346228):0.03183732):0.18081545):0.05680476,(DQ084199__bat_SARS_coronavirus_HKU3_2_:0.0041683,FJ211859__Recombinant_coronavirus_clone_Bat_SARS_CoV_:0.0):0.00258044):0.02397853,(DQ412043__Bat_SARS_coronavirus_Rm1_:0.01958604,DQ071615__Bat_SARS_coronavirus_Rp3_:0.00597423):0.00901211):0.00918604):0.00421645):0.0057924):0.03230014):0.04903729):0.17752831):0.115528):0.10546823); tree bootstrap_51 = [&U] (MN996532__Bat_coronavirus_RaTG13_[&Organism="Bat coronavirus RaTG13","Genetic Code"="Standard",Taxonomy="Viruses; Riboviria; Nidovirales; Cornidovirineae; Coronaviridae; unclassified Coronaviridae"]:0.01823894,MN908947__Wuhan_seafood_market_pneumonia_virus_isolate_Wuhan_Hu_1_SARS_CoV_2_:0.00771744,(MT084071__Pangolin_coronavirus_isolate_MP789_[&"# Nucleotide Sequences With Mates"=0,Organism="Pangolin coronavirus",Description="Pangolin coronavirus isolate MP789 genomic sequence",Modified=Mon Mar 16 16:48:31 ECT 2020,"Genetic Code"="Standard",Taxonomy="Viruses; Riboviria; Nidovirales; Cornidovirineae; Coronaviridae; Orthocoronavirinae; Betacoronavirus; unclassified Betacoronavirus","Mean Coverage"=1.99039647870886,Topology="linear","Alignment method"="MAFFT Alignment",Created=Mon Mar 09 08:59:37 ECT 2020,URN="urn:local:.:caf-bnocubz","Free end gaps"=true,"Ref Seq Name"="","Molecule Type"="AA"]:0.02885595,((MG772934__Bat_SARS_like_coronavirus_isolate_bat_SL_CoVZXC21_:0.00623503,MG772933__Bat_SARS_like_coronavirus_isolate_bat_SL_CoVZC45_:0.00368575):0.09135294,((KF569996__Rhinolophus_affinis_coronavirus_isolate_LYRa11_:0.05832954,((KC881006__Bat_SARS_like_coronavirus_Rs3367_:0.000506,KY417144__Bat_SARS_like_coronavirus_isolate_Rs4084_:0.02952486):0.051292,(AY390556__SARS_coronavirus_GZ02_[&Organism="SARS coronavirus GZ02","Genetic Code"="Standard",Taxonomy="Viruses; Riboviria; Nidovirales; Cornidovirineae; Coronaviridae; Orthocoronavirinae; Betacoronavirus; Sarbecovirus"]:0.0221397,(KY417146__Bat_SARS_like_coronavirus_isolate_Rs4231_:0.03343509,KT444582__SARS_like_coronavirus_WIV16_:0.0):0.0016347):0.02913214):0.03988491):0.08068022,(FJ211860__Recombinant_coronavirus_clone_Bat_SRBD_spike_glycoprotein_gene_:0.000879,((FJ211859__Recombinant_coronavirus_clone_Bat_SARS_CoV_:0.0,DQ084199__bat_SARS_coronavirus_HKU3_2_:0.0):0.0,('KJ473814__BtRs_BetaCoV/HuB2013_':0.10311193,(KY417148__Bat_SARS_like_coronavirus_isolate_Rs4247_:0.00182214,('MK211375__Coronavirus_BtRs_BetaCoV/YN2018A_':0.00107344,((KY417142__Bat_SARS_like_coronavirus_isolate_As6526_:0.01185968,'MK211378__Coronavirus_BtRs_BetaCoV/YN2018D_':0.06691894):0.00229738,(DQ071615__Bat_SARS_coronavirus_Rp3_:0.01554745,DQ412043__Bat_SARS_coronavirus_Rm1_:0.03152894):0.01015616):0.00749408):0.00363657):0.00748759):0.0149814):0.06089364):0.07477851):0.17186016):0.08416563):0.10972204); tree bootstrap_52 = [&U] (MN996532__Bat_coronavirus_RaTG13_[&Organism="Bat coronavirus RaTG13","Genetic Code"="Standard",Taxonomy="Viruses; Riboviria; Nidovirales; Cornidovirineae; Coronaviridae; unclassified Coronaviridae"]:0.01417466,MN908947__Wuhan_seafood_market_pneumonia_virus_isolate_Wuhan_Hu_1_SARS_CoV_2_:0.000842,(MT084071__Pangolin_coronavirus_isolate_MP789_[&"# Nucleotide Sequences With Mates"=0,Organism="Pangolin coronavirus",Description="Pangolin coronavirus isolate MP789 genomic sequence",Modified=Mon Mar 16 16:48:31 ECT 2020,"Genetic Code"="Standard",Taxonomy="Viruses; Riboviria; Nidovirales; Cornidovirineae; Coronaviridae; Orthocoronavirinae; Betacoronavirus; unclassified Betacoronavirus","Mean Coverage"=1.99039647870886,Topology="linear","Alignment method"="MAFFT Alignment",Created=Mon Mar 09 08:59:37 ECT 2020,URN="urn:local:.:caf-bnocubz","Free end gaps"=true,"Ref Seq Name"="","Molecule Type"="AA"]:0.02474385,((MG772934__Bat_SARS_like_coronavirus_isolate_bat_SL_CoVZXC21_:0.00749422,MG772933__Bat_SARS_like_coronavirus_isolate_bat_SL_CoVZC45_:0.00405993):0.026983,('KJ473814__BtRs_BetaCoV/HuB2013_':0.08438471,(DQ412043__Bat_SARS_coronavirus_Rm1_:0.02366191,(((FJ211860__Recombinant_coronavirus_clone_Bat_SRBD_spike_glycoprotein_gene_:0.00148125,(KF569996__Rhinolophus_affinis_coronavirus_isolate_LYRa11_:0.03716069,((KY417144__Bat_SARS_like_coronavirus_isolate_Rs4084_:0.0316348,KC881006__Bat_SARS_like_coronavirus_Rs3367_:0.000413):0.05797753,(AY390556__SARS_coronavirus_GZ02_[&Organism="SARS coronavirus GZ02","Genetic Code"="Standard",Taxonomy="Viruses; Riboviria; Nidovirales; Cornidovirineae; Coronaviridae; Orthocoronavirinae; Betacoronavirus; Sarbecovirus"]:0.02019721,(KY417146__Bat_SARS_like_coronavirus_isolate_Rs4231_:0.03389317,KT444582__SARS_like_coronavirus_WIV16_:0.0):0.00556423):0.02475992):0.04971805):0.22325337):0.05846545,(DQ084199__bat_SARS_coronavirus_HKU3_2_:0.00161646,FJ211859__Recombinant_coronavirus_clone_Bat_SARS_CoV_:0.0):0.0):0.03327449,(DQ071615__Bat_SARS_coronavirus_Rp3_:0.01211595,(('MK211378__Coronavirus_BtRs_BetaCoV/YN2018D_':0.08322907,KY417142__Bat_SARS_like_coronavirus_isolate_As6526_:0.00866759):0.00495965,('MK211375__Coronavirus_BtRs_BetaCoV/YN2018A_':0.00237967,KY417148__Bat_SARS_like_coronavirus_isolate_Rs4247_:0.00162204):0.00352548):0.01316577):0.00515883):0.01573529):0.05553547):0.21060321):0.13014364):0.13369373); tree bootstrap_53 = [&U] (MN908947__Wuhan_seafood_market_pneumonia_virus_isolate_Wuhan_Hu_1_SARS_CoV_2_:0.00794207,MN996532__Bat_coronavirus_RaTG13_[&Organism="Bat coronavirus RaTG13","Genetic Code"="Standard",Taxonomy="Viruses; Riboviria; Nidovirales; Cornidovirineae; Coronaviridae; unclassified Coronaviridae"]:0.02475601,(MT084071__Pangolin_coronavirus_isolate_MP789_[&"# Nucleotide Sequences With Mates"=0,Organism="Pangolin coronavirus",Description="Pangolin coronavirus isolate MP789 genomic sequence",Modified=Mon Mar 16 16:48:31 ECT 2020,"Genetic Code"="Standard",Taxonomy="Viruses; Riboviria; Nidovirales; Cornidovirineae; Coronaviridae; Orthocoronavirinae; Betacoronavirus; unclassified Betacoronavirus","Mean Coverage"=1.99039647870886,Topology="linear","Alignment method"="MAFFT Alignment",Created=Mon Mar 09 08:59:37 ECT 2020,URN="urn:local:.:caf-bnocubz","Free end gaps"=true,"Ref Seq Name"="","Molecule Type"="AA"]:0.00126436,((MG772933__Bat_SARS_like_coronavirus_isolate_bat_SL_CoVZC45_:0.00619368,MG772934__Bat_SARS_like_coronavirus_isolate_bat_SL_CoVZXC21_:0.00600338):0.02361892,('KJ473814__BtRs_BetaCoV/HuB2013_':0.05749551,((DQ071615__Bat_SARS_coronavirus_Rp3_:0.0126637,DQ412043__Bat_SARS_coronavirus_Rm1_:0.0204512):0.00985022,((DQ084199__bat_SARS_coronavirus_HKU3_2_:0.0,(FJ211859__Recombinant_coronavirus_clone_Bat_SARS_CoV_:0.0,(FJ211860__Recombinant_coronavirus_clone_Bat_SRBD_spike_glycoprotein_gene_:0.00161026,(KF569996__Rhinolophus_affinis_coronavirus_isolate_LYRa11_:0.06363327,(AY390556__SARS_coronavirus_GZ02_[&Organism="SARS coronavirus GZ02","Genetic Code"="Standard",Taxonomy="Viruses; Riboviria; Nidovirales; Cornidovirineae; Coronaviridae; Orthocoronavirinae; Betacoronavirus; Sarbecovirus"]:0.01888837,(KY417146__Bat_SARS_like_coronavirus_isolate_Rs4231_:0.04566388,(KT444582__SARS_like_coronavirus_WIV16_:0.000851,(KC881006__Bat_SARS_like_coronavirus_Rs3367_:0.0,KY417144__Bat_SARS_like_coronavirus_isolate_Rs4084_:0.04379184):0.0691067):0.00730126):0.00192571):0.0546221):0.1795936):0.05814339):0.0):0.02018253,(KY417148__Bat_SARS_like_coronavirus_isolate_Rs4247_:0.000746,('MK211375__Coronavirus_BtRs_BetaCoV/YN2018A_':0.00337823,(KY417142__Bat_SARS_like_coronavirus_isolate_As6526_:0.00244673,'MK211378__Coronavirus_BtRs_BetaCoV/YN2018D_':0.05918799):0.00858818):0.00575144):0.01837255):0.00117026):0.05197434):0.20444092):0.10717529):0.1174227); tree bootstrap_54 = [&U] (MN908947__Wuhan_seafood_market_pneumonia_virus_isolate_Wuhan_Hu_1_SARS_CoV_2_:0.00461515,MN996532__Bat_coronavirus_RaTG13_[&Organism="Bat coronavirus RaTG13","Genetic Code"="Standard",Taxonomy="Viruses; Riboviria; Nidovirales; Cornidovirineae; Coronaviridae; unclassified Coronaviridae"]:0.0165389,(MT084071__Pangolin_coronavirus_isolate_MP789_[&"# Nucleotide Sequences With Mates"=0,Organism="Pangolin coronavirus",Description="Pangolin coronavirus isolate MP789 genomic sequence",Modified=Mon Mar 16 16:48:31 ECT 2020,"Genetic Code"="Standard",Taxonomy="Viruses; Riboviria; Nidovirales; Cornidovirineae; Coronaviridae; Orthocoronavirinae; Betacoronavirus; unclassified Betacoronavirus","Mean Coverage"=1.99039647870886,Topology="linear","Alignment method"="MAFFT Alignment",Created=Mon Mar 09 08:59:37 ECT 2020,URN="urn:local:.:caf-bnocubz","Free end gaps"=true,"Ref Seq Name"="","Molecule Type"="AA"]:0.01082782,((MG772934__Bat_SARS_like_coronavirus_isolate_bat_SL_CoVZXC21_:0.00717488,MG772933__Bat_SARS_like_coronavirus_isolate_bat_SL_CoVZC45_:0.00264709):0.02452056,('KJ473814__BtRs_BetaCoV/HuB2013_':0.06533236,(DQ412043__Bat_SARS_coronavirus_Rm1_:0.02144207,(((KY417142__Bat_SARS_like_coronavirus_isolate_As6526_:0.01822134,'MK211375__Coronavirus_BtRs_BetaCoV/YN2018A_':0.000744):0.00715856,('MK211378__Coronavirus_BtRs_BetaCoV/YN2018D_':0.08760264,KY417148__Bat_SARS_like_coronavirus_isolate_Rs4247_:0.0):0.00167578):0.01353759,(DQ071615__Bat_SARS_coronavirus_Rp3_:0.01279125,((FJ211860__Recombinant_coronavirus_clone_Bat_SRBD_spike_glycoprotein_gene_:0.00212491,(KF569996__Rhinolophus_affinis_coronavirus_isolate_LYRa11_:0.0460575,((KC881006__Bat_SARS_like_coronavirus_Rs3367_:0.00237113,KY417144__Bat_SARS_like_coronavirus_isolate_Rs4084_:0.03856643):0.05608733,(KT444582__SARS_like_coronavirus_WIV16_:0.00153655,(AY390556__SARS_coronavirus_GZ02_[&Organism="SARS coronavirus GZ02","Genetic Code"="Standard",Taxonomy="Viruses; Riboviria; Nidovirales; Cornidovirineae; Coronaviridae; Orthocoronavirinae; Betacoronavirus; Sarbecovirus"]:0.02911849,KY417146__Bat_SARS_like_coronavirus_isolate_Rs4231_:0.03678617):0.00643205):0.02942734):0.05534094):0.2237407):0.0559246,(DQ084199__bat_SARS_coronavirus_HKU3_2_:0.000795,FJ211859__Recombinant_coronavirus_clone_Bat_SARS_CoV_:0.0):0.0):0.02097424):0.00448372):0.01033708):0.0690116):0.2373153):0.13153214):0.10536798); tree bootstrap_55 = [&U] (MN996532__Bat_coronavirus_RaTG13_[&Organism="Bat coronavirus RaTG13","Genetic Code"="Standard",Taxonomy="Viruses; Riboviria; Nidovirales; Cornidovirineae; Coronaviridae; unclassified Coronaviridae"]:0.01858832,MN908947__Wuhan_seafood_market_pneumonia_virus_isolate_Wuhan_Hu_1_SARS_CoV_2_:0.00470905,(MT084071__Pangolin_coronavirus_isolate_MP789_[&"# Nucleotide Sequences With Mates"=0,Organism="Pangolin coronavirus",Description="Pangolin coronavirus isolate MP789 genomic sequence",Modified=Mon Mar 16 16:48:31 ECT 2020,"Genetic Code"="Standard",Taxonomy="Viruses; Riboviria; Nidovirales; Cornidovirineae; Coronaviridae; Orthocoronavirinae; Betacoronavirus; unclassified Betacoronavirus","Mean Coverage"=1.99039647870886,Topology="linear","Alignment method"="MAFFT Alignment",Created=Mon Mar 09 08:59:37 ECT 2020,URN="urn:local:.:caf-bnocubz","Free end gaps"=true,"Ref Seq Name"="","Molecule Type"="AA"]:0.00677891,((MG772933__Bat_SARS_like_coronavirus_isolate_bat_SL_CoVZC45_:0.00347339,MG772934__Bat_SARS_like_coronavirus_isolate_bat_SL_CoVZXC21_:0.00780361):0.04637735,((KF569996__Rhinolophus_affinis_coronavirus_isolate_LYRa11_:0.05820547,((KY417144__Bat_SARS_like_coronavirus_isolate_Rs4084_:0.03831012,KC881006__Bat_SARS_like_coronavirus_Rs3367_:0.00257621):0.05012585,(AY390556__SARS_coronavirus_GZ02_[&Organism="SARS coronavirus GZ02","Genetic Code"="Standard",Taxonomy="Viruses; Riboviria; Nidovirales; Cornidovirineae; Coronaviridae; Orthocoronavirinae; Betacoronavirus; Sarbecovirus"]:0.01941685,(KY417146__Bat_SARS_like_coronavirus_isolate_Rs4231_:0.03749299,KT444582__SARS_like_coronavirus_WIV16_:0.00395598):0.00483979):0.04247082):0.0438949):0.20614553,('KJ473814__BtRs_BetaCoV/HuB2013_':0.04542426,('MK211378__Coronavirus_BtRs_BetaCoV/YN2018D_':0.04435979,(KY417148__Bat_SARS_like_coronavirus_isolate_Rs4247_:0.0,(('MK211375__Coronavirus_BtRs_BetaCoV/YN2018A_':0.00159744,KY417142__Bat_SARS_like_coronavirus_isolate_As6526_:0.01615396):0.00369037,((FJ211860__Recombinant_coronavirus_clone_Bat_SRBD_spike_glycoprotein_gene_:0.05539068,(DQ084199__bat_SARS_coronavirus_HKU3_2_:0.000808,FJ211859__Recombinant_coronavirus_clone_Bat_SARS_CoV_:0.0):0.0):0.03339533,(DQ071615__Bat_SARS_coronavirus_Rp3_:0.00994097,DQ412043__Bat_SARS_coronavirus_Rm1_:0.03530904):0.00663727):0.00717574):0.0043582):0.04309733):0.07873188):0.09673552):0.22990647):0.13552837):0.1351634); tree bootstrap_56 = [&U] (MN996532__Bat_coronavirus_RaTG13_[&Organism="Bat coronavirus RaTG13","Genetic Code"="Standard",Taxonomy="Viruses; Riboviria; Nidovirales; Cornidovirineae; Coronaviridae; unclassified Coronaviridae"]:0.02314931,MN908947__Wuhan_seafood_market_pneumonia_virus_isolate_Wuhan_Hu_1_SARS_CoV_2_:0.00837825,(MT084071__Pangolin_coronavirus_isolate_MP789_[&"# Nucleotide Sequences With Mates"=0,Organism="Pangolin coronavirus",Description="Pangolin coronavirus isolate MP789 genomic sequence",Modified=Mon Mar 16 16:48:31 ECT 2020,"Genetic Code"="Standard",Taxonomy="Viruses; Riboviria; Nidovirales; Cornidovirineae; Coronaviridae; Orthocoronavirinae; Betacoronavirus; unclassified Betacoronavirus","Mean Coverage"=1.99039647870886,Topology="linear","Alignment method"="MAFFT Alignment",Created=Mon Mar 09 08:59:37 ECT 2020,URN="urn:local:.:caf-bnocubz","Free end gaps"=true,"Ref Seq Name"="","Molecule Type"="AA"]:0.02364275,((MG772933__Bat_SARS_like_coronavirus_isolate_bat_SL_CoVZC45_:0.01008722,MG772934__Bat_SARS_like_coronavirus_isolate_bat_SL_CoVZXC21_:0.01106496):0.09147861,((KF569996__Rhinolophus_affinis_coronavirus_isolate_LYRa11_:0.07280358,((KY417144__Bat_SARS_like_coronavirus_isolate_Rs4084_:0.03092155,KC881006__Bat_SARS_like_coronavirus_Rs3367_:0.00439181):0.05525119,(AY390556__SARS_coronavirus_GZ02_[&Organism="SARS coronavirus GZ02","Genetic Code"="Standard",Taxonomy="Viruses; Riboviria; Nidovirales; Cornidovirineae; Coronaviridae; Orthocoronavirinae; Betacoronavirus; Sarbecovirus"]:0.02762333,(KT444582__SARS_like_coronavirus_WIV16_:0.00562691,KY417146__Bat_SARS_like_coronavirus_isolate_Rs4231_:0.03521575):0.00219806):0.03924047):0.03534984):0.14921179,(FJ211860__Recombinant_coronavirus_clone_Bat_SRBD_spike_glycoprotein_gene_:0.0,((DQ084199__bat_SARS_coronavirus_HKU3_2_:0.0,FJ211859__Recombinant_coronavirus_clone_Bat_SARS_CoV_:0.0):0.0,(('KJ473814__BtRs_BetaCoV/HuB2013_':0.162954,(('MK211375__Coronavirus_BtRs_BetaCoV/YN2018A_':0.00561886,KY417142__Bat_SARS_like_coronavirus_isolate_As6526_:0.01521158):0.00647946,(KY417148__Bat_SARS_like_coronavirus_isolate_Rs4247_:0.0,'MK211378__Coronavirus_BtRs_BetaCoV/YN2018D_':0.10276665):0.00270405):0.0195357):0.0,(DQ071615__Bat_SARS_coronavirus_Rp3_:0.01599028,DQ412043__Bat_SARS_coronavirus_Rm1_:0.02674015):0.00634102):0.03066765):0.05708786):0.11827175):0.25183916):0.06656265):0.14543004); tree bootstrap_57 = [&U] (MN996532__Bat_coronavirus_RaTG13_[&Organism="Bat coronavirus RaTG13","Genetic Code"="Standard",Taxonomy="Viruses; Riboviria; Nidovirales; Cornidovirineae; Coronaviridae; unclassified Coronaviridae"]:0.02452329,MN908947__Wuhan_seafood_market_pneumonia_virus_isolate_Wuhan_Hu_1_SARS_CoV_2_:0.00202632,(MT084071__Pangolin_coronavirus_isolate_MP789_[&"# Nucleotide Sequences With Mates"=0,Organism="Pangolin coronavirus",Description="Pangolin coronavirus isolate MP789 genomic sequence",Modified=Mon Mar 16 16:48:31 ECT 2020,"Genetic Code"="Standard",Taxonomy="Viruses; Riboviria; Nidovirales; Cornidovirineae; Coronaviridae; Orthocoronavirinae; Betacoronavirus; unclassified Betacoronavirus","Mean Coverage"=1.99039647870886,Topology="linear","Alignment method"="MAFFT Alignment",Created=Mon Mar 09 08:59:37 ECT 2020,URN="urn:local:.:caf-bnocubz","Free end gaps"=true,"Ref Seq Name"="","Molecule Type"="AA"]:0.01535224,((MG772933__Bat_SARS_like_coronavirus_isolate_bat_SL_CoVZC45_:0.00604517,MG772934__Bat_SARS_like_coronavirus_isolate_bat_SL_CoVZXC21_:0.00663065):0.01720231,(((FJ211860__Recombinant_coronavirus_clone_Bat_SRBD_spike_glycoprotein_gene_:0.0,(KF569996__Rhinolophus_affinis_coronavirus_isolate_LYRa11_:0.06757293,((KC881006__Bat_SARS_like_coronavirus_Rs3367_:0.000244,KY417144__Bat_SARS_like_coronavirus_isolate_Rs4084_:0.04624548):0.06441247,(KT444582__SARS_like_coronavirus_WIV16_:0.0,(KY417146__Bat_SARS_like_coronavirus_isolate_Rs4231_:0.0449717,AY390556__SARS_coronavirus_GZ02_[&Organism="SARS coronavirus GZ02","Genetic Code"="Standard",Taxonomy="Viruses; Riboviria; Nidovirales; Cornidovirineae; Coronaviridae; Orthocoronavirinae; Betacoronavirus; Sarbecovirus"]:0.02455642):0.00509979):0.0276273):0.06139582):0.22696667):0.06221339,(FJ211859__Recombinant_coronavirus_clone_Bat_SARS_CoV_:0.0,DQ084199__bat_SARS_coronavirus_HKU3_2_:0.0):0.0):0.00791985,((KY417148__Bat_SARS_like_coronavirus_isolate_Rs4247_:0.0,('MK211375__Coronavirus_BtRs_BetaCoV/YN2018A_':0.000840,(KY417142__Bat_SARS_like_coronavirus_isolate_As6526_:0.00309976,'MK211378__Coronavirus_BtRs_BetaCoV/YN2018D_':0.0703416):0.01075762):0.00503243):0.00996939,('KJ473814__BtRs_BetaCoV/HuB2013_':0.13134804,(DQ412043__Bat_SARS_coronavirus_Rm1_:0.02829843,DQ071615__Bat_SARS_coronavirus_Rp3_:0.01558302):0.00532448):0.00278962):0.01744356):0.25596494):0.12162373):0.11643739); tree bootstrap_58 = [&U] (MN908947__Wuhan_seafood_market_pneumonia_virus_isolate_Wuhan_Hu_1_SARS_CoV_2_:0.00489589,MN996532__Bat_coronavirus_RaTG13_[&Organism="Bat coronavirus RaTG13","Genetic Code"="Standard",Taxonomy="Viruses; Riboviria; Nidovirales; Cornidovirineae; Coronaviridae; unclassified Coronaviridae"]:0.02161222,(MT084071__Pangolin_coronavirus_isolate_MP789_[&"# Nucleotide Sequences With Mates"=0,Organism="Pangolin coronavirus",Description="Pangolin coronavirus isolate MP789 genomic sequence",Modified=Mon Mar 16 16:48:31 ECT 2020,"Genetic Code"="Standard",Taxonomy="Viruses; Riboviria; Nidovirales; Cornidovirineae; Coronaviridae; Orthocoronavirinae; Betacoronavirus; unclassified Betacoronavirus","Mean Coverage"=1.99039647870886,Topology="linear","Alignment method"="MAFFT Alignment",Created=Mon Mar 09 08:59:37 ECT 2020,URN="urn:local:.:caf-bnocubz","Free end gaps"=true,"Ref Seq Name"="","Molecule Type"="AA"]:0.0154231,((MG772933__Bat_SARS_like_coronavirus_isolate_bat_SL_CoVZC45_:0.00606582,MG772934__Bat_SARS_like_coronavirus_isolate_bat_SL_CoVZXC21_:0.00679296):0.0089668,('KJ473814__BtRs_BetaCoV/HuB2013_':0.05091703,('MK211378__Coronavirus_BtRs_BetaCoV/YN2018D_':0.04570871,((DQ412043__Bat_SARS_coronavirus_Rm1_:0.03463892,DQ071615__Bat_SARS_coronavirus_Rp3_:0.00694694):0.00728887,(((FJ211860__Recombinant_coronavirus_clone_Bat_SRBD_spike_glycoprotein_gene_:0.0,(KF569996__Rhinolophus_affinis_coronavirus_isolate_LYRa11_:0.06397349,((KC881006__Bat_SARS_like_coronavirus_Rs3367_:0.00128054,KY417144__Bat_SARS_like_coronavirus_isolate_Rs4084_:0.03725378):0.05234447,(AY390556__SARS_coronavirus_GZ02_[&Organism="SARS coronavirus GZ02","Genetic Code"="Standard",Taxonomy="Viruses; Riboviria; Nidovirales; Cornidovirineae; Coronaviridae; Orthocoronavirinae; Betacoronavirus; Sarbecovirus"]:0.02785338,(KY417146__Bat_SARS_like_coronavirus_isolate_Rs4231_:0.04060498,KT444582__SARS_like_coronavirus_WIV16_:0.000422):0.00425508):0.0289721):0.04398188):0.20969034):0.07579918,(FJ211859__Recombinant_coronavirus_clone_Bat_SARS_CoV_:0.0,DQ084199__bat_SARS_coronavirus_HKU3_2_:0.00261811):0.0):0.02759969,(KY417148__Bat_SARS_like_coronavirus_isolate_Rs4247_:0.0,('MK211375__Coronavirus_BtRs_BetaCoV/YN2018A_':0.000882,KY417142__Bat_SARS_like_coronavirus_isolate_As6526_:0.01443697):0.00439829):0.00681627):0.00271566):0.03277742):0.03769081):0.21284668):0.1670791):0.09831466); tree bootstrap_59 = [&U] (MN908947__Wuhan_seafood_market_pneumonia_virus_isolate_Wuhan_Hu_1_SARS_CoV_2_:0.0079804,MN996532__Bat_coronavirus_RaTG13_[&Organism="Bat coronavirus RaTG13","Genetic Code"="Standard",Taxonomy="Viruses; Riboviria; Nidovirales; Cornidovirineae; Coronaviridae; unclassified Coronaviridae"]:0.01620558,(MT084071__Pangolin_coronavirus_isolate_MP789_[&"# Nucleotide Sequences With Mates"=0,Organism="Pangolin coronavirus",Description="Pangolin coronavirus isolate MP789 genomic sequence",Modified=Mon Mar 16 16:48:31 ECT 2020,"Genetic Code"="Standard",Taxonomy="Viruses; Riboviria; Nidovirales; Cornidovirineae; Coronaviridae; Orthocoronavirinae; Betacoronavirus; unclassified Betacoronavirus","Mean Coverage"=1.99039647870886,Topology="linear","Alignment method"="MAFFT Alignment",Created=Mon Mar 09 08:59:37 ECT 2020,URN="urn:local:.:caf-bnocubz","Free end gaps"=true,"Ref Seq Name"="","Molecule Type"="AA"]:0.0199673,((MG772933__Bat_SARS_like_coronavirus_isolate_bat_SL_CoVZC45_:0.00195872,MG772934__Bat_SARS_like_coronavirus_isolate_bat_SL_CoVZXC21_:0.00786332):0.02200427,('KJ473814__BtRs_BetaCoV/HuB2013_':0.07666773,(DQ412043__Bat_SARS_coronavirus_Rm1_:0.01297929,(((FJ211860__Recombinant_coronavirus_clone_Bat_SRBD_spike_glycoprotein_gene_:0.0,(KF569996__Rhinolophus_affinis_coronavirus_isolate_LYRa11_:0.0767735,((KC881006__Bat_SARS_like_coronavirus_Rs3367_:0.000767,KY417144__Bat_SARS_like_coronavirus_isolate_Rs4084_:0.02710395):0.05331341,(AY390556__SARS_coronavirus_GZ02_[&Organism="SARS coronavirus GZ02","Genetic Code"="Standard",Taxonomy="Viruses; Riboviria; Nidovirales; Cornidovirineae; Coronaviridae; Orthocoronavirinae; Betacoronavirus; Sarbecovirus"]:0.01728038,(KY417146__Bat_SARS_like_coronavirus_isolate_Rs4231_:0.03416387,KT444582__SARS_like_coronavirus_WIV16_:0.0045378):0.00558291):0.0195606):0.04807898):0.18761181):0.04441939,(DQ084199__bat_SARS_coronavirus_HKU3_2_:0.0,FJ211859__Recombinant_coronavirus_clone_Bat_SARS_CoV_:0.0):0.0):0.02778275,(DQ071615__Bat_SARS_coronavirus_Rp3_:0.01932578,(('MK211375__Coronavirus_BtRs_BetaCoV/YN2018A_':0.00167159,KY417142__Bat_SARS_like_coronavirus_isolate_As6526_:0.01269756):0.00406897,('MK211378__Coronavirus_BtRs_BetaCoV/YN2018D_':0.08544881,KY417148__Bat_SARS_like_coronavirus_isolate_Rs4247_:0.0):0.00265877):0.01517321):0.00300187):0.00671716):0.05177041):0.19688816):0.12513973):0.1214705); tree bootstrap_60 = [&U] (MN908947__Wuhan_seafood_market_pneumonia_virus_isolate_Wuhan_Hu_1_SARS_CoV_2_:0.00525092,MN996532__Bat_coronavirus_RaTG13_[&Organism="Bat coronavirus RaTG13","Genetic Code"="Standard",Taxonomy="Viruses; Riboviria; Nidovirales; Cornidovirineae; Coronaviridae; unclassified Coronaviridae"]:0.01873847,(MT084071__Pangolin_coronavirus_isolate_MP789_[&"# Nucleotide Sequences With Mates"=0,Organism="Pangolin coronavirus",Description="Pangolin coronavirus isolate MP789 genomic sequence",Modified=Mon Mar 16 16:48:31 ECT 2020,"Genetic Code"="Standard",Taxonomy="Viruses; Riboviria; Nidovirales; Cornidovirineae; Coronaviridae; Orthocoronavirinae; Betacoronavirus; unclassified Betacoronavirus","Mean Coverage"=1.99039647870886,Topology="linear","Alignment method"="MAFFT Alignment",Created=Mon Mar 09 08:59:37 ECT 2020,URN="urn:local:.:caf-bnocubz","Free end gaps"=true,"Ref Seq Name"="","Molecule Type"="AA"]:0.01272874,((MG772933__Bat_SARS_like_coronavirus_isolate_bat_SL_CoVZC45_:0.00179133,MG772934__Bat_SARS_like_coronavirus_isolate_bat_SL_CoVZXC21_:0.01020496):0.01406768,('KJ473814__BtRs_BetaCoV/HuB2013_':0.08125634,('MK211378__Coronavirus_BtRs_BetaCoV/YN2018D_':0.03117854,(DQ412043__Bat_SARS_coronavirus_Rm1_:0.02797663,(KY417142__Bat_SARS_like_coronavirus_isolate_As6526_:0.00563341,(DQ071615__Bat_SARS_coronavirus_Rp3_:0.01181125,('MK211375__Coronavirus_BtRs_BetaCoV/YN2018A_':0.00102534,(KY417148__Bat_SARS_like_coronavirus_isolate_Rs4247_:0.000714,(FJ211859__Recombinant_coronavirus_clone_Bat_SARS_CoV_:0.0,(DQ084199__bat_SARS_coronavirus_HKU3_2_:0.0,(FJ211860__Recombinant_coronavirus_clone_Bat_SRBD_spike_glycoprotein_gene_:0.000597,(KF569996__Rhinolophus_affinis_coronavirus_isolate_LYRa11_:0.05104886,((KC881006__Bat_SARS_like_coronavirus_Rs3367_:0.00302139,KY417144__Bat_SARS_like_coronavirus_isolate_Rs4084_:0.03738638):0.04751379,(AY390556__SARS_coronavirus_GZ02_[&Organism="SARS coronavirus GZ02","Genetic Code"="Standard",Taxonomy="Viruses; Riboviria; Nidovirales; Cornidovirineae; Coronaviridae; Orthocoronavirinae; Betacoronavirus; Sarbecovirus"]:0.02466719,(KT444582__SARS_like_coronavirus_WIV16_:0.00439024,KY417146__Bat_SARS_like_coronavirus_isolate_Rs4231_:0.0420989):0.00390516):0.02658262):0.04670753):0.19177697):0.05485702):0.0):0.02191972):0.00151089):0.00372017):0.00472228):0.00771563):0.04077943):0.04617334):0.28089926):0.14538192):0.12670927); tree bootstrap_61 = [&U] (MN996532__Bat_coronavirus_RaTG13_[&Organism="Bat coronavirus RaTG13","Genetic Code"="Standard",Taxonomy="Viruses; Riboviria; Nidovirales; Cornidovirineae; Coronaviridae; unclassified Coronaviridae"]:0.0158309,MN908947__Wuhan_seafood_market_pneumonia_virus_isolate_Wuhan_Hu_1_SARS_CoV_2_:0.00659228,(MT084071__Pangolin_coronavirus_isolate_MP789_[&"# Nucleotide Sequences With Mates"=0,Organism="Pangolin coronavirus",Description="Pangolin coronavirus isolate MP789 genomic sequence",Modified=Mon Mar 16 16:48:31 ECT 2020,"Genetic Code"="Standard",Taxonomy="Viruses; Riboviria; Nidovirales; Cornidovirineae; Coronaviridae; Orthocoronavirinae; Betacoronavirus; unclassified Betacoronavirus","Mean Coverage"=1.99039647870886,Topology="linear","Alignment method"="MAFFT Alignment",Created=Mon Mar 09 08:59:37 ECT 2020,URN="urn:local:.:caf-bnocubz","Free end gaps"=true,"Ref Seq Name"="","Molecule Type"="AA"]:0.02800117,((MG772933__Bat_SARS_like_coronavirus_isolate_bat_SL_CoVZC45_:0.00702471,MG772934__Bat_SARS_like_coronavirus_isolate_bat_SL_CoVZXC21_:0.00674851):0.01733743,('KJ473814__BtRs_BetaCoV/HuB2013_':0.07328904,(((FJ211860__Recombinant_coronavirus_clone_Bat_SRBD_spike_glycoprotein_gene_:0.00261734,(KF569996__Rhinolophus_affinis_coronavirus_isolate_LYRa11_:0.05297496,((KC881006__Bat_SARS_like_coronavirus_Rs3367_:0.0038757,KY417144__Bat_SARS_like_coronavirus_isolate_Rs4084_:0.04080527):0.05542532,(AY390556__SARS_coronavirus_GZ02_[&Organism="SARS coronavirus GZ02","Genetic Code"="Standard",Taxonomy="Viruses; Riboviria; Nidovirales; Cornidovirineae; Coronaviridae; Orthocoronavirinae; Betacoronavirus; Sarbecovirus"]:0.03068647,(KT444582__SARS_like_coronavirus_WIV16_:0.0033338,KY417146__Bat_SARS_like_coronavirus_isolate_Rs4231_:0.03834982):0.00182248):0.02465188):0.06214617):0.16118181):0.04662894,(FJ211859__Recombinant_coronavirus_clone_Bat_SARS_CoV_:0.0,DQ084199__bat_SARS_coronavirus_HKU3_2_:0.000844):0.0):0.02757156,((DQ071615__Bat_SARS_coronavirus_Rp3_:0.0086285,DQ412043__Bat_SARS_coronavirus_Rm1_:0.03618804):0.0061123,(KY417148__Bat_SARS_like_coronavirus_isolate_Rs4247_:0.00106348,('MK211375__Coronavirus_BtRs_BetaCoV/YN2018A_':0.00350189,('MK211378__Coronavirus_BtRs_BetaCoV/YN2018D_':0.08870988,KY417142__Bat_SARS_like_coronavirus_isolate_As6526_:0.00195101):0.01028776):0.00566716):0.01281899):0.00105172):0.06529177):0.20934394):0.15552795):0.11040455); tree bootstrap_62 = [&U] (MN996532__Bat_coronavirus_RaTG13_[&Organism="Bat coronavirus RaTG13","Genetic Code"="Standard",Taxonomy="Viruses; Riboviria; Nidovirales; Cornidovirineae; Coronaviridae; unclassified Coronaviridae"]:0.01644567,MN908947__Wuhan_seafood_market_pneumonia_virus_isolate_Wuhan_Hu_1_SARS_CoV_2_:0.00967882,(MT084071__Pangolin_coronavirus_isolate_MP789_[&"# Nucleotide Sequences With Mates"=0,Organism="Pangolin coronavirus",Description="Pangolin coronavirus isolate MP789 genomic sequence",Modified=Mon Mar 16 16:48:31 ECT 2020,"Genetic Code"="Standard",Taxonomy="Viruses; Riboviria; Nidovirales; Cornidovirineae; Coronaviridae; Orthocoronavirinae; Betacoronavirus; unclassified Betacoronavirus","Mean Coverage"=1.99039647870886,Topology="linear","Alignment method"="MAFFT Alignment",Created=Mon Mar 09 08:59:37 ECT 2020,URN="urn:local:.:caf-bnocubz","Free end gaps"=true,"Ref Seq Name"="","Molecule Type"="AA"]:0.02258767,((MG772933__Bat_SARS_like_coronavirus_isolate_bat_SL_CoVZC45_:0.0072186,MG772934__Bat_SARS_like_coronavirus_isolate_bat_SL_CoVZXC21_:0.00617428):0.0922318,((KF569996__Rhinolophus_affinis_coronavirus_isolate_LYRa11_:0.08412947,((KC881006__Bat_SARS_like_coronavirus_Rs3367_:0.0,KY417144__Bat_SARS_like_coronavirus_isolate_Rs4084_:0.03145664):0.0624067,(KT444582__SARS_like_coronavirus_WIV16_:0.0,(KY417146__Bat_SARS_like_coronavirus_isolate_Rs4231_:0.02821147,AY390556__SARS_coronavirus_GZ02_[&Organism="SARS coronavirus GZ02","Genetic Code"="Standard",Taxonomy="Viruses; Riboviria; Nidovirales; Cornidovirineae; Coronaviridae; Orthocoronavirinae; Betacoronavirus; Sarbecovirus"]:0.03022284):0.00619487):0.03450695):0.03301008):0.10997705,(FJ211860__Recombinant_coronavirus_clone_Bat_SRBD_spike_glycoprotein_gene_:0.00430525,(DQ084199__bat_SARS_coronavirus_HKU3_2_:0.0,(FJ211859__Recombinant_coronavirus_clone_Bat_SARS_CoV_:0.0,((DQ071615__Bat_SARS_coronavirus_Rp3_:0.00780242,DQ412043__Bat_SARS_coronavirus_Rm1_:0.02299638):0.00916708,((KY417142__Bat_SARS_like_coronavirus_isolate_As6526_:0.01354534,'MK211375__Coronavirus_BtRs_BetaCoV/YN2018A_':0.00163774):0.00134103,(KY417148__Bat_SARS_like_coronavirus_isolate_Rs4247_:0.0,('KJ473814__BtRs_BetaCoV/HuB2013_':0.10707453,'MK211378__Coronavirus_BtRs_BetaCoV/YN2018D_':0.04710487):0.03802014):0.00192255):0.01066514):0.02597628):0.0):0.04841451):0.115585):0.17760376):0.05987337):0.13310443); tree bootstrap_63 = [&U] (MN996532__Bat_coronavirus_RaTG13_[&Organism="Bat coronavirus RaTG13","Genetic Code"="Standard",Taxonomy="Viruses; Riboviria; Nidovirales; Cornidovirineae; Coronaviridae; unclassified Coronaviridae"]:0.01782824,MN908947__Wuhan_seafood_market_pneumonia_virus_isolate_Wuhan_Hu_1_SARS_CoV_2_:0.00548575,(MT084071__Pangolin_coronavirus_isolate_MP789_[&"# Nucleotide Sequences With Mates"=0,Organism="Pangolin coronavirus",Description="Pangolin coronavirus isolate MP789 genomic sequence",Modified=Mon Mar 16 16:48:31 ECT 2020,"Genetic Code"="Standard",Taxonomy="Viruses; Riboviria; Nidovirales; Cornidovirineae; Coronaviridae; Orthocoronavirinae; Betacoronavirus; unclassified Betacoronavirus","Mean Coverage"=1.99039647870886,Topology="linear","Alignment method"="MAFFT Alignment",Created=Mon Mar 09 08:59:37 ECT 2020,URN="urn:local:.:caf-bnocubz","Free end gaps"=true,"Ref Seq Name"="","Molecule Type"="AA"]:0.0203426,((MG772933__Bat_SARS_like_coronavirus_isolate_bat_SL_CoVZC45_:0.00453288,MG772934__Bat_SARS_like_coronavirus_isolate_bat_SL_CoVZXC21_:0.00495128):0.07194936,((KF569996__Rhinolophus_affinis_coronavirus_isolate_LYRa11_:0.06841083,((KY417144__Bat_SARS_like_coronavirus_isolate_Rs4084_:0.03444702,KC881006__Bat_SARS_like_coronavirus_Rs3367_:0.000836):0.04605802,(AY390556__SARS_coronavirus_GZ02_[&Organism="SARS coronavirus GZ02","Genetic Code"="Standard",Taxonomy="Viruses; Riboviria; Nidovirales; Cornidovirineae; Coronaviridae; Orthocoronavirinae; Betacoronavirus; Sarbecovirus"]:0.02293666,(KY417146__Bat_SARS_like_coronavirus_isolate_Rs4231_:0.03556514,KT444582__SARS_like_coronavirus_WIV16_:0.00212681):0.00321264):0.02167223):0.03967355):0.10498903,(FJ211860__Recombinant_coronavirus_clone_Bat_SRBD_spike_glycoprotein_gene_:0.000937,((DQ084199__bat_SARS_coronavirus_HKU3_2_:0.00169201,FJ211859__Recombinant_coronavirus_clone_Bat_SARS_CoV_:0.0):0.0,(((KY417148__Bat_SARS_like_coronavirus_isolate_Rs4247_:0.0,('KJ473814__BtRs_BetaCoV/HuB2013_':0.11273991,'MK211378__Coronavirus_BtRs_BetaCoV/YN2018D_':0.0310286):0.04147516):0.00367568,(KY417142__Bat_SARS_like_coronavirus_isolate_As6526_:0.00848582,'MK211375__Coronavirus_BtRs_BetaCoV/YN2018A_':0.00355084):0.002309):0.00470311,(DQ071615__Bat_SARS_coronavirus_Rp3_:0.007593,DQ412043__Bat_SARS_coronavirus_Rm1_:0.02329542):0.00355374):0.02296787):0.05963558):0.09754742):0.22030331):0.0521808):0.09829279); tree bootstrap_64 = [&U] (MN996532__Bat_coronavirus_RaTG13_[&Organism="Bat coronavirus RaTG13","Genetic Code"="Standard",Taxonomy="Viruses; Riboviria; Nidovirales; Cornidovirineae; Coronaviridae; unclassified Coronaviridae"]:0.01785506,MN908947__Wuhan_seafood_market_pneumonia_virus_isolate_Wuhan_Hu_1_SARS_CoV_2_:0.00534068,(MT084071__Pangolin_coronavirus_isolate_MP789_[&"# Nucleotide Sequences With Mates"=0,Organism="Pangolin coronavirus",Description="Pangolin coronavirus isolate MP789 genomic sequence",Modified=Mon Mar 16 16:48:31 ECT 2020,"Genetic Code"="Standard",Taxonomy="Viruses; Riboviria; Nidovirales; Cornidovirineae; Coronaviridae; Orthocoronavirinae; Betacoronavirus; unclassified Betacoronavirus","Mean Coverage"=1.99039647870886,Topology="linear","Alignment method"="MAFFT Alignment",Created=Mon Mar 09 08:59:37 ECT 2020,URN="urn:local:.:caf-bnocubz","Free end gaps"=true,"Ref Seq Name"="","Molecule Type"="AA"]:0.02139833,((MG772933__Bat_SARS_like_coronavirus_isolate_bat_SL_CoVZC45_:0.00779734,MG772934__Bat_SARS_like_coronavirus_isolate_bat_SL_CoVZXC21_:0.00320667):0.09592834,((KF569996__Rhinolophus_affinis_coronavirus_isolate_LYRa11_:0.07107818,((KY417144__Bat_SARS_like_coronavirus_isolate_Rs4084_:0.03724993,KC881006__Bat_SARS_like_coronavirus_Rs3367_:0.0):0.05985992,(AY390556__SARS_coronavirus_GZ02_[&Organism="SARS coronavirus GZ02","Genetic Code"="Standard",Taxonomy="Viruses; Riboviria; Nidovirales; Cornidovirineae; Coronaviridae; Orthocoronavirinae; Betacoronavirus; Sarbecovirus"]:0.02113636,(KT444582__SARS_like_coronavirus_WIV16_:0.0050249,KY417146__Bat_SARS_like_coronavirus_isolate_Rs4231_:0.04157984):0.00353335):0.02563768):0.04115718):0.09832043,(FJ211860__Recombinant_coronavirus_clone_Bat_SRBD_spike_glycoprotein_gene_:0.0,((DQ084199__bat_SARS_coronavirus_HKU3_2_:0.000844,FJ211859__Recombinant_coronavirus_clone_Bat_SARS_CoV_:0.0):0.0,((DQ412043__Bat_SARS_coronavirus_Rm1_:0.02460709,'KJ473814__BtRs_BetaCoV/HuB2013_':0.12066436):0.0023877,(DQ071615__Bat_SARS_coronavirus_Rp3_:0.01269349,(('MK211375__Coronavirus_BtRs_BetaCoV/YN2018A_':0.000836,KY417142__Bat_SARS_like_coronavirus_isolate_As6526_:0.01123541):0.00406067,(KY417148__Bat_SARS_like_coronavirus_isolate_Rs4247_:0.0,'MK211378__Coronavirus_BtRs_BetaCoV/YN2018D_':0.08634779):0.00363174):0.0133467):0.00624583):0.03300709):0.05349154):0.09794173):0.22079776):0.05176269):0.13642744); tree bootstrap_65 = [&U] (MN908947__Wuhan_seafood_market_pneumonia_virus_isolate_Wuhan_Hu_1_SARS_CoV_2_:0.00253082,MN996532__Bat_coronavirus_RaTG13_[&Organism="Bat coronavirus RaTG13","Genetic Code"="Standard",Taxonomy="Viruses; Riboviria; Nidovirales; Cornidovirineae; Coronaviridae; unclassified Coronaviridae"]:0.03024864,(MT084071__Pangolin_coronavirus_isolate_MP789_[&"# Nucleotide Sequences With Mates"=0,Organism="Pangolin coronavirus",Description="Pangolin coronavirus isolate MP789 genomic sequence",Modified=Mon Mar 16 16:48:31 ECT 2020,"Genetic Code"="Standard",Taxonomy="Viruses; Riboviria; Nidovirales; Cornidovirineae; Coronaviridae; Orthocoronavirinae; Betacoronavirus; unclassified Betacoronavirus","Mean Coverage"=1.99039647870886,Topology="linear","Alignment method"="MAFFT Alignment",Created=Mon Mar 09 08:59:37 ECT 2020,URN="urn:local:.:caf-bnocubz","Free end gaps"=true,"Ref Seq Name"="","Molecule Type"="AA"]:0.02286612,((MG772934__Bat_SARS_like_coronavirus_isolate_bat_SL_CoVZXC21_:0.00723139,MG772933__Bat_SARS_like_coronavirus_isolate_bat_SL_CoVZC45_:0.00382229):0.03074351,('KJ473814__BtRs_BetaCoV/HuB2013_':0.07497056,(DQ412043__Bat_SARS_coronavirus_Rm1_:0.01870746,(((FJ211860__Recombinant_coronavirus_clone_Bat_SRBD_spike_glycoprotein_gene_:0.0,(KF569996__Rhinolophus_affinis_coronavirus_isolate_LYRa11_:0.06163714,((KY417144__Bat_SARS_like_coronavirus_isolate_Rs4084_:0.03085898,KC881006__Bat_SARS_like_coronavirus_Rs3367_:0.0):0.06722465,(KT444582__SARS_like_coronavirus_WIV16_:0.0,(KY417146__Bat_SARS_like_coronavirus_isolate_Rs4231_:0.03213447,AY390556__SARS_coronavirus_GZ02_[&Organism="SARS coronavirus GZ02","Genetic Code"="Standard",Taxonomy="Viruses; Riboviria; Nidovirales; Cornidovirineae; Coronaviridae; Orthocoronavirinae; Betacoronavirus; Sarbecovirus"]:0.04320694):0.00445194):0.02912268):0.06407131):0.18494973):0.04410683,(DQ084199__bat_SARS_coronavirus_HKU3_2_:0.000854,FJ211859__Recombinant_coronavirus_clone_Bat_SARS_CoV_:0.0):0.00286605):0.02769328,(DQ071615__Bat_SARS_coronavirus_Rp3_:0.00880453,((KY417148__Bat_SARS_like_coronavirus_isolate_Rs4247_:0.00498137,'MK211375__Coronavirus_BtRs_BetaCoV/YN2018A_':0.00262284):0.00578991,(KY417142__Bat_SARS_like_coronavirus_isolate_As6526_:0.00598696,'MK211378__Coronavirus_BtRs_BetaCoV/YN2018D_':0.06566523):0.00361062):0.01580835):0.00546322):0.00924046):0.05075727):0.22664707):0.13721267):0.12753956); tree bootstrap_66 = [&U] (MN908947__Wuhan_seafood_market_pneumonia_virus_isolate_Wuhan_Hu_1_SARS_CoV_2_:0.00227699,MN996532__Bat_coronavirus_RaTG13_[&Organism="Bat coronavirus RaTG13","Genetic Code"="Standard",Taxonomy="Viruses; Riboviria; Nidovirales; Cornidovirineae; Coronaviridae; unclassified Coronaviridae"]:0.02731352,(MT084071__Pangolin_coronavirus_isolate_MP789_[&"# Nucleotide Sequences With Mates"=0,Organism="Pangolin coronavirus",Description="Pangolin coronavirus isolate MP789 genomic sequence",Modified=Mon Mar 16 16:48:31 ECT 2020,"Genetic Code"="Standard",Taxonomy="Viruses; Riboviria; Nidovirales; Cornidovirineae; Coronaviridae; Orthocoronavirinae; Betacoronavirus; unclassified Betacoronavirus","Mean Coverage"=1.99039647870886,Topology="linear","Alignment method"="MAFFT Alignment",Created=Mon Mar 09 08:59:37 ECT 2020,URN="urn:local:.:caf-bnocubz","Free end gaps"=true,"Ref Seq Name"="","Molecule Type"="AA"]:0.01862009,((MG772934__Bat_SARS_like_coronavirus_isolate_bat_SL_CoVZXC21_:0.00813479,MG772933__Bat_SARS_like_coronavirus_isolate_bat_SL_CoVZC45_:0.00485506):0.01692445,('KJ473814__BtRs_BetaCoV/HuB2013_':0.06232347,('MK211378__Coronavirus_BtRs_BetaCoV/YN2018D_':0.04649186,(DQ412043__Bat_SARS_coronavirus_Rm1_:0.02088282,(DQ071615__Bat_SARS_coronavirus_Rp3_:0.00746801,(((FJ211860__Recombinant_coronavirus_clone_Bat_SRBD_spike_glycoprotein_gene_:0.0,(KF569996__Rhinolophus_affinis_coronavirus_isolate_LYRa11_:0.05259271,((KY417144__Bat_SARS_like_coronavirus_isolate_Rs4084_:0.03121742,KC881006__Bat_SARS_like_coronavirus_Rs3367_:0.00353703):0.05618994,(AY390556__SARS_coronavirus_GZ02_[&Organism="SARS coronavirus GZ02","Genetic Code"="Standard",Taxonomy="Viruses; Riboviria; Nidovirales; Cornidovirineae; Coronaviridae; Orthocoronavirinae; Betacoronavirus; Sarbecovirus"]:0.02892776,(KT444582__SARS_like_coronavirus_WIV16_:0.00500421,KY417146__Bat_SARS_like_coronavirus_isolate_Rs4231_:0.03094732):0.00495171):0.02371233):0.05142033):0.20191536):0.04857462,(DQ084199__bat_SARS_coronavirus_HKU3_2_:0.000804,FJ211859__Recombinant_coronavirus_clone_Bat_SARS_CoV_:0.0):0.0):0.02780698,(KY417148__Bat_SARS_like_coronavirus_isolate_Rs4247_:0.000699,('MK211375__Coronavirus_BtRs_BetaCoV/YN2018A_':0.00243772,KY417142__Bat_SARS_like_coronavirus_isolate_As6526_:0.00812872):0.00410847):0.00737706):0.00325046):0.00905477):0.03347974):0.02808511):0.21055547):0.1185244):0.10375134); tree bootstrap_67 = [&U] (MN996532__Bat_coronavirus_RaTG13_[&Organism="Bat coronavirus RaTG13","Genetic Code"="Standard",Taxonomy="Viruses; Riboviria; Nidovirales; Cornidovirineae; Coronaviridae; unclassified Coronaviridae"]:0.0241885,MN908947__Wuhan_seafood_market_pneumonia_virus_isolate_Wuhan_Hu_1_SARS_CoV_2_:0.00696849,(MT084071__Pangolin_coronavirus_isolate_MP789_[&"# Nucleotide Sequences With Mates"=0,Organism="Pangolin coronavirus",Description="Pangolin coronavirus isolate MP789 genomic sequence",Modified=Mon Mar 16 16:48:31 ECT 2020,"Genetic Code"="Standard",Taxonomy="Viruses; Riboviria; Nidovirales; Cornidovirineae; Coronaviridae; Orthocoronavirinae; Betacoronavirus; unclassified Betacoronavirus","Mean Coverage"=1.99039647870886,Topology="linear","Alignment method"="MAFFT Alignment",Created=Mon Mar 09 08:59:37 ECT 2020,URN="urn:local:.:caf-bnocubz","Free end gaps"=true,"Ref Seq Name"="","Molecule Type"="AA"]:0.02661338,((MG772933__Bat_SARS_like_coronavirus_isolate_bat_SL_CoVZC45_:0.00293046,MG772934__Bat_SARS_like_coronavirus_isolate_bat_SL_CoVZXC21_:0.01056808):0.02077009,('KJ473814__BtRs_BetaCoV/HuB2013_':0.07947381,('MK211378__Coronavirus_BtRs_BetaCoV/YN2018D_':0.05157839,(DQ412043__Bat_SARS_coronavirus_Rm1_:0.02260936,(DQ071615__Bat_SARS_coronavirus_Rp3_:0.01540973,(KY417148__Bat_SARS_like_coronavirus_isolate_Rs4247_:0.0,(((FJ211860__Recombinant_coronavirus_clone_Bat_SRBD_spike_glycoprotein_gene_:0.000676,(KF569996__Rhinolophus_affinis_coronavirus_isolate_LYRa11_:0.06077935,((AY390556__SARS_coronavirus_GZ02_[&Organism="SARS coronavirus GZ02","Genetic Code"="Standard",Taxonomy="Viruses; Riboviria; Nidovirales; Cornidovirineae; Coronaviridae; Orthocoronavirinae; Betacoronavirus; Sarbecovirus"]:0.02000491,(KY417146__Bat_SARS_like_coronavirus_isolate_Rs4231_:0.04966885,KT444582__SARS_like_coronavirus_WIV16_:0.00468374):0.00115855):0.0285548,(KC881006__Bat_SARS_like_coronavirus_Rs3367_:0.00104728,KY417144__Bat_SARS_like_coronavirus_isolate_Rs4084_:0.0481197):0.07052016):0.03885272):0.18776811):0.06061767,(DQ084199__bat_SARS_coronavirus_HKU3_2_:0.00244731,FJ211859__Recombinant_coronavirus_clone_Bat_SARS_CoV_:0.0):0.0):0.03456367,(KY417142__Bat_SARS_like_coronavirus_isolate_As6526_:0.01186781,'MK211375__Coronavirus_BtRs_BetaCoV/YN2018A_':0.00421194):0.00397905):0.00345872):0.0107876):0.01090612):0.03556916):0.03879399):0.20766812):0.15030917):0.09389541); tree bootstrap_68 = [&U] (MN996532__Bat_coronavirus_RaTG13_[&Organism="Bat coronavirus RaTG13","Genetic Code"="Standard",Taxonomy="Viruses; Riboviria; Nidovirales; Cornidovirineae; Coronaviridae; unclassified Coronaviridae"]:0.01744778,MN908947__Wuhan_seafood_market_pneumonia_virus_isolate_Wuhan_Hu_1_SARS_CoV_2_:0.00574062,(MT084071__Pangolin_coronavirus_isolate_MP789_[&"# Nucleotide Sequences With Mates"=0,Organism="Pangolin coronavirus",Description="Pangolin coronavirus isolate MP789 genomic sequence",Modified=Mon Mar 16 16:48:31 ECT 2020,"Genetic Code"="Standard",Taxonomy="Viruses; Riboviria; Nidovirales; Cornidovirineae; Coronaviridae; Orthocoronavirinae; Betacoronavirus; unclassified Betacoronavirus","Mean Coverage"=1.99039647870886,Topology="linear","Alignment method"="MAFFT Alignment",Created=Mon Mar 09 08:59:37 ECT 2020,URN="urn:local:.:caf-bnocubz","Free end gaps"=true,"Ref Seq Name"="","Molecule Type"="AA"]:0.01193401,((MG772933__Bat_SARS_like_coronavirus_isolate_bat_SL_CoVZC45_:0.00532156,MG772934__Bat_SARS_like_coronavirus_isolate_bat_SL_CoVZXC21_:0.01035405):0.09105826,((KF569996__Rhinolophus_affinis_coronavirus_isolate_LYRa11_:0.07766496,((KC881006__Bat_SARS_like_coronavirus_Rs3367_:0.0,KY417144__Bat_SARS_like_coronavirus_isolate_Rs4084_:0.03386772):0.04817753,(KT444582__SARS_like_coronavirus_WIV16_:0.00108101,(AY390556__SARS_coronavirus_GZ02_[&Organism="SARS coronavirus GZ02","Genetic Code"="Standard",Taxonomy="Viruses; Riboviria; Nidovirales; Cornidovirineae; Coronaviridae; Orthocoronavirinae; Betacoronavirus; Sarbecovirus"]:0.02452726,KY417146__Bat_SARS_like_coronavirus_isolate_Rs4231_:0.03505726):0.00406568):0.02651609):0.04820268):0.07586713,(FJ211860__Recombinant_coronavirus_clone_Bat_SRBD_spike_glycoprotein_gene_:0.00365712,((FJ211859__Recombinant_coronavirus_clone_Bat_SARS_CoV_:0.0,DQ084199__bat_SARS_coronavirus_HKU3_2_:0.0):0.0,((DQ412043__Bat_SARS_coronavirus_Rm1_:0.02305118,'KJ473814__BtRs_BetaCoV/HuB2013_':0.08344084):0.00702123,(DQ071615__Bat_SARS_coronavirus_Rp3_:0.01660812,(KY417148__Bat_SARS_like_coronavirus_isolate_Rs4247_:0.00631164,('MK211375__Coronavirus_BtRs_BetaCoV/YN2018A_':0.0018437,(KY417142__Bat_SARS_like_coronavirus_isolate_As6526_:0.0046353,'MK211378__Coronavirus_BtRs_BetaCoV/YN2018D_':0.05962008):0.00665661):0.00182483):0.01205575):0.00752606):0.02418359):0.04441139):0.08840169):0.2116099):0.08297096):0.1072653); tree bootstrap_69 = [&U] (MN908947__Wuhan_seafood_market_pneumonia_virus_isolate_Wuhan_Hu_1_SARS_CoV_2_:0.00565456,MN996532__Bat_coronavirus_RaTG13_[&Organism="Bat coronavirus RaTG13","Genetic Code"="Standard",Taxonomy="Viruses; Riboviria; Nidovirales; Cornidovirineae; Coronaviridae; unclassified Coronaviridae"]:0.01842052,(MT084071__Pangolin_coronavirus_isolate_MP789_[&"# Nucleotide Sequences With Mates"=0,Organism="Pangolin coronavirus",Description="Pangolin coronavirus isolate MP789 genomic sequence",Modified=Mon Mar 16 16:48:31 ECT 2020,"Genetic Code"="Standard",Taxonomy="Viruses; Riboviria; Nidovirales; Cornidovirineae; Coronaviridae; Orthocoronavirinae; Betacoronavirus; unclassified Betacoronavirus","Mean Coverage"=1.99039647870886,Topology="linear","Alignment method"="MAFFT Alignment",Created=Mon Mar 09 08:59:37 ECT 2020,URN="urn:local:.:caf-bnocubz","Free end gaps"=true,"Ref Seq Name"="","Molecule Type"="AA"]:0.01365011,((MG772933__Bat_SARS_like_coronavirus_isolate_bat_SL_CoVZC45_:0.00923157,MG772934__Bat_SARS_like_coronavirus_isolate_bat_SL_CoVZXC21_:0.00621902):0.02420274,('KJ473814__BtRs_BetaCoV/HuB2013_':0.06616099,((DQ071615__Bat_SARS_coronavirus_Rp3_:0.0092148,DQ412043__Bat_SARS_coronavirus_Rm1_:0.03066526):0.00995811,(((FJ211860__Recombinant_coronavirus_clone_Bat_SRBD_spike_glycoprotein_gene_:0.000598,(KF569996__Rhinolophus_affinis_coronavirus_isolate_LYRa11_:0.07408619,((KC881006__Bat_SARS_like_coronavirus_Rs3367_:0.000403,KY417144__Bat_SARS_like_coronavirus_isolate_Rs4084_:0.0330879):0.06612992,(KT444582__SARS_like_coronavirus_WIV16_:0.00322218,(AY390556__SARS_coronavirus_GZ02_[&Organism="SARS coronavirus GZ02","Genetic Code"="Standard",Taxonomy="Viruses; Riboviria; Nidovirales; Cornidovirineae; Coronaviridae; Orthocoronavirinae; Betacoronavirus; Sarbecovirus"]:0.02942459,KY417146__Bat_SARS_like_coronavirus_isolate_Rs4231_:0.03099884):0.00253722):0.0411545):0.04555886):0.20682328):0.05803319,(DQ084199__bat_SARS_coronavirus_HKU3_2_:0.0,FJ211859__Recombinant_coronavirus_clone_Bat_SARS_CoV_:0.0):0.0):0.02312211,((KY417148__Bat_SARS_like_coronavirus_isolate_Rs4247_:0.0,'MK211378__Coronavirus_BtRs_BetaCoV/YN2018D_':0.08501395):0.00294158,(KY417142__Bat_SARS_like_coronavirus_isolate_As6526_:0.01557409,'MK211375__Coronavirus_BtRs_BetaCoV/YN2018A_':0.00245498):0.00430307):0.00981851):0.00392307):0.05408813):0.21019118):0.14387067):0.1203844); tree bootstrap_70 = [&U] (MN908947__Wuhan_seafood_market_pneumonia_virus_isolate_Wuhan_Hu_1_SARS_CoV_2_:0.00677707,MN996532__Bat_coronavirus_RaTG13_[&Organism="Bat coronavirus RaTG13","Genetic Code"="Standard",Taxonomy="Viruses; Riboviria; Nidovirales; Cornidovirineae; Coronaviridae; unclassified Coronaviridae"]:0.02080975,(MT084071__Pangolin_coronavirus_isolate_MP789_[&"# Nucleotide Sequences With Mates"=0,Organism="Pangolin coronavirus",Description="Pangolin coronavirus isolate MP789 genomic sequence",Modified=Mon Mar 16 16:48:31 ECT 2020,"Genetic Code"="Standard",Taxonomy="Viruses; Riboviria; Nidovirales; Cornidovirineae; Coronaviridae; Orthocoronavirinae; Betacoronavirus; unclassified Betacoronavirus","Mean Coverage"=1.99039647870886,Topology="linear","Alignment method"="MAFFT Alignment",Created=Mon Mar 09 08:59:37 ECT 2020,URN="urn:local:.:caf-bnocubz","Free end gaps"=true,"Ref Seq Name"="","Molecule Type"="AA"]:0.02063736,((MG772934__Bat_SARS_like_coronavirus_isolate_bat_SL_CoVZXC21_:0.00875494,MG772933__Bat_SARS_like_coronavirus_isolate_bat_SL_CoVZC45_:0.00175717):0.01664471,((DQ084199__bat_SARS_coronavirus_HKU3_2_:0.0,(FJ211859__Recombinant_coronavirus_clone_Bat_SARS_CoV_:0.0,(FJ211860__Recombinant_coronavirus_clone_Bat_SRBD_spike_glycoprotein_gene_:0.00147538,(KF569996__Rhinolophus_affinis_coronavirus_isolate_LYRa11_:0.07795233,((KY417144__Bat_SARS_like_coronavirus_isolate_Rs4084_:0.04166791,KC881006__Bat_SARS_like_coronavirus_Rs3367_:0.000915):0.04620757,(KT444582__SARS_like_coronavirus_WIV16_:0.0032504,(KY417146__Bat_SARS_like_coronavirus_isolate_Rs4231_:0.03788071,AY390556__SARS_coronavirus_GZ02_[&Organism="SARS coronavirus GZ02","Genetic Code"="Standard",Taxonomy="Viruses; Riboviria; Nidovirales; Cornidovirineae; Coronaviridae; Orthocoronavirinae; Betacoronavirus; Sarbecovirus"]:0.01939436):0.00621163):0.03723686):0.04501624):0.18498018):0.0561096):0.0):0.00733267,((KY417142__Bat_SARS_like_coronavirus_isolate_As6526_:0.01380778,'MK211375__Coronavirus_BtRs_BetaCoV/YN2018A_':0.0016996):0.00249452,((DQ412043__Bat_SARS_coronavirus_Rm1_:0.02567146,DQ071615__Bat_SARS_coronavirus_Rp3_:0.01569028):0.01587744,(KY417148__Bat_SARS_like_coronavirus_isolate_Rs4247_:0.0,('MK211378__Coronavirus_BtRs_BetaCoV/YN2018D_':0.04939577,'KJ473814__BtRs_BetaCoV/HuB2013_':0.11282036):0.04307306):0.00229854):0.00378267):0.02738015):0.26042071):0.14284428):0.13638936); tree bootstrap_71 = [&U] (MN908947__Wuhan_seafood_market_pneumonia_virus_isolate_Wuhan_Hu_1_SARS_CoV_2_:0.00586677,MN996532__Bat_coronavirus_RaTG13_[&Organism="Bat coronavirus RaTG13","Genetic Code"="Standard",Taxonomy="Viruses; Riboviria; Nidovirales; Cornidovirineae; Coronaviridae; unclassified Coronaviridae"]:0.0148279,(MT084071__Pangolin_coronavirus_isolate_MP789_[&"# Nucleotide Sequences With Mates"=0,Organism="Pangolin coronavirus",Description="Pangolin coronavirus isolate MP789 genomic sequence",Modified=Mon Mar 16 16:48:31 ECT 2020,"Genetic Code"="Standard",Taxonomy="Viruses; Riboviria; Nidovirales; Cornidovirineae; Coronaviridae; Orthocoronavirinae; Betacoronavirus; unclassified Betacoronavirus","Mean Coverage"=1.99039647870886,Topology="linear","Alignment method"="MAFFT Alignment",Created=Mon Mar 09 08:59:37 ECT 2020,URN="urn:local:.:caf-bnocubz","Free end gaps"=true,"Ref Seq Name"="","Molecule Type"="AA"]:0.00669049,((MG772933__Bat_SARS_like_coronavirus_isolate_bat_SL_CoVZC45_:0.00489034,MG772934__Bat_SARS_like_coronavirus_isolate_bat_SL_CoVZXC21_:0.00878424):0.02839591,('KJ473814__BtRs_BetaCoV/HuB2013_':0.05878934,(DQ412043__Bat_SARS_coronavirus_Rm1_:0.01722849,((DQ084199__bat_SARS_coronavirus_HKU3_2_:0.0,(FJ211859__Recombinant_coronavirus_clone_Bat_SARS_CoV_:0.0,(FJ211860__Recombinant_coronavirus_clone_Bat_SRBD_spike_glycoprotein_gene_:0.000662,(KF569996__Rhinolophus_affinis_coronavirus_isolate_LYRa11_:0.06044762,(AY390556__SARS_coronavirus_GZ02_[&Organism="SARS coronavirus GZ02","Genetic Code"="Standard",Taxonomy="Viruses; Riboviria; Nidovirales; Cornidovirineae; Coronaviridae; Orthocoronavirinae; Betacoronavirus; Sarbecovirus"]:0.02067603,(KY417146__Bat_SARS_like_coronavirus_isolate_Rs4231_:0.05031318,(KT444582__SARS_like_coronavirus_WIV16_:0.0,(KC881006__Bat_SARS_like_coronavirus_Rs3367_:0.0,KY417144__Bat_SARS_like_coronavirus_isolate_Rs4084_:0.05344761):0.07564909):0.00781305):0.00438903):0.05756841):0.17257567):0.06734959):0.0):0.01794304,(DQ071615__Bat_SARS_coronavirus_Rp3_:0.01286361,('MK211378__Coronavirus_BtRs_BetaCoV/YN2018D_':0.06734741,(KY417148__Bat_SARS_like_coronavirus_isolate_Rs4247_:0.0,(KY417142__Bat_SARS_like_coronavirus_isolate_As6526_:0.01039753,'MK211375__Coronavirus_BtRs_BetaCoV/YN2018A_':0.000858):0.00596369):0.0012467):0.01019618):0.00393807):0.01427955):0.04868371):0.18630145):0.15178837):0.10682055); tree bootstrap_72 = [&U] (MN996532__Bat_coronavirus_RaTG13_[&Organism="Bat coronavirus RaTG13","Genetic Code"="Standard",Taxonomy="Viruses; Riboviria; Nidovirales; Cornidovirineae; Coronaviridae; unclassified Coronaviridae"]:0.01485991,MN908947__Wuhan_seafood_market_pneumonia_virus_isolate_Wuhan_Hu_1_SARS_CoV_2_:0.00494042,(MT084071__Pangolin_coronavirus_isolate_MP789_[&"# Nucleotide Sequences With Mates"=0,Organism="Pangolin coronavirus",Description="Pangolin coronavirus isolate MP789 genomic sequence",Modified=Mon Mar 16 16:48:31 ECT 2020,"Genetic Code"="Standard",Taxonomy="Viruses; Riboviria; Nidovirales; Cornidovirineae; Coronaviridae; Orthocoronavirinae; Betacoronavirus; unclassified Betacoronavirus","Mean Coverage"=1.99039647870886,Topology="linear","Alignment method"="MAFFT Alignment",Created=Mon Mar 09 08:59:37 ECT 2020,URN="urn:local:.:caf-bnocubz","Free end gaps"=true,"Ref Seq Name"="","Molecule Type"="AA"]:0.010088,((MG772933__Bat_SARS_like_coronavirus_isolate_bat_SL_CoVZC45_:0.00823263,MG772934__Bat_SARS_like_coronavirus_isolate_bat_SL_CoVZXC21_:0.00799152):0.00953705,('KJ473814__BtRs_BetaCoV/HuB2013_':0.0552222,((DQ071615__Bat_SARS_coronavirus_Rp3_:0.01336783,DQ412043__Bat_SARS_coronavirus_Rm1_:0.01530868):0.00613392,(((FJ211860__Recombinant_coronavirus_clone_Bat_SRBD_spike_glycoprotein_gene_:0.0,(KF569996__Rhinolophus_affinis_coronavirus_isolate_LYRa11_:0.05759779,(AY390556__SARS_coronavirus_GZ02_[&Organism="SARS coronavirus GZ02","Genetic Code"="Standard",Taxonomy="Viruses; Riboviria; Nidovirales; Cornidovirineae; Coronaviridae; Orthocoronavirinae; Betacoronavirus; Sarbecovirus"]:0.01085094,(KY417146__Bat_SARS_like_coronavirus_isolate_Rs4231_:0.02438186,(KT444582__SARS_like_coronavirus_WIV16_:0.00181559,(KC881006__Bat_SARS_like_coronavirus_Rs3367_:0.000261,KY417144__Bat_SARS_like_coronavirus_isolate_Rs4084_:0.02616851):0.08081858):0.00719573):0.00427635):0.05106998):0.17328507):0.05051394,(FJ211859__Recombinant_coronavirus_clone_Bat_SARS_CoV_:0.0,DQ084199__bat_SARS_coronavirus_HKU3_2_:0.0):0.0):0.02422575,(('MK211375__Coronavirus_BtRs_BetaCoV/YN2018A_':0.00317538,KY417142__Bat_SARS_like_coronavirus_isolate_As6526_:0.00938321):0.0012613,(KY417148__Bat_SARS_like_coronavirus_isolate_Rs4247_:0.0,'MK211378__Coronavirus_BtRs_BetaCoV/YN2018D_':0.06910861):0.0049125):0.00772845):0.00235552):0.05283194):0.20433446):0.12767265):0.0964511); tree bootstrap_73 = [&U] (MN908947__Wuhan_seafood_market_pneumonia_virus_isolate_Wuhan_Hu_1_SARS_CoV_2_:0.00336632,MN996532__Bat_coronavirus_RaTG13_[&Organism="Bat coronavirus RaTG13","Genetic Code"="Standard",Taxonomy="Viruses; Riboviria; Nidovirales; Cornidovirineae; Coronaviridae; unclassified Coronaviridae"]:0.01926634,(MT084071__Pangolin_coronavirus_isolate_MP789_[&"# Nucleotide Sequences With Mates"=0,Organism="Pangolin coronavirus",Description="Pangolin coronavirus isolate MP789 genomic sequence",Modified=Mon Mar 16 16:48:31 ECT 2020,"Genetic Code"="Standard",Taxonomy="Viruses; Riboviria; Nidovirales; Cornidovirineae; Coronaviridae; Orthocoronavirinae; Betacoronavirus; unclassified Betacoronavirus","Mean Coverage"=1.99039647870886,Topology="linear","Alignment method"="MAFFT Alignment",Created=Mon Mar 09 08:59:37 ECT 2020,URN="urn:local:.:caf-bnocubz","Free end gaps"=true,"Ref Seq Name"="","Molecule Type"="AA"]:0.01882329,((MG772934__Bat_SARS_like_coronavirus_isolate_bat_SL_CoVZXC21_:0.00550193,MG772933__Bat_SARS_like_coronavirus_isolate_bat_SL_CoVZC45_:0.00400903):0.09568341,((KF569996__Rhinolophus_affinis_coronavirus_isolate_LYRa11_:0.06659498,((KY417144__Bat_SARS_like_coronavirus_isolate_Rs4084_:0.03726642,KC881006__Bat_SARS_like_coronavirus_Rs3367_:0.00161778):0.05367158,(KT444582__SARS_like_coronavirus_WIV16_:0.00356289,(KY417146__Bat_SARS_like_coronavirus_isolate_Rs4231_:0.03755179,AY390556__SARS_coronavirus_GZ02_[&Organism="SARS coronavirus GZ02","Genetic Code"="Standard",Taxonomy="Viruses; Riboviria; Nidovirales; Cornidovirineae; Coronaviridae; Orthocoronavirinae; Betacoronavirus; Sarbecovirus"]:0.02306157):0.00527365):0.03091663):0.0736343):0.10492879,(FJ211860__Recombinant_coronavirus_clone_Bat_SRBD_spike_glycoprotein_gene_:0.00594483,((DQ084199__bat_SARS_coronavirus_HKU3_2_:0.000819,FJ211859__Recombinant_coronavirus_clone_Bat_SARS_CoV_:0.0):0.0,(DQ412043__Bat_SARS_coronavirus_Rm1_:0.03652489,(DQ071615__Bat_SARS_coronavirus_Rp3_:0.00705274,(KY417142__Bat_SARS_like_coronavirus_isolate_As6526_:0.00901465,('MK211375__Coronavirus_BtRs_BetaCoV/YN2018A_':0.003323,(KY417148__Bat_SARS_like_coronavirus_isolate_Rs4247_:0.0,('MK211378__Coronavirus_BtRs_BetaCoV/YN2018D_':0.0431244,'KJ473814__BtRs_BetaCoV/HuB2013_':0.11367571):0.04388544):0.000786):0.00284779):0.00680695):0.00497227):0.01853195):0.05438431):0.10038571):0.25667952):0.07814609):0.14904522); tree bootstrap_74 = [&U] (MN908947__Wuhan_seafood_market_pneumonia_virus_isolate_Wuhan_Hu_1_SARS_CoV_2_:0.0035071,MN996532__Bat_coronavirus_RaTG13_[&Organism="Bat coronavirus RaTG13","Genetic Code"="Standard",Taxonomy="Viruses; Riboviria; Nidovirales; Cornidovirineae; Coronaviridae; unclassified Coronaviridae"]:0.01222827,(MT084071__Pangolin_coronavirus_isolate_MP789_[&"# Nucleotide Sequences With Mates"=0,Organism="Pangolin coronavirus",Description="Pangolin coronavirus isolate MP789 genomic sequence",Modified=Mon Mar 16 16:48:31 ECT 2020,"Genetic Code"="Standard",Taxonomy="Viruses; Riboviria; Nidovirales; Cornidovirineae; Coronaviridae; Orthocoronavirinae; Betacoronavirus; unclassified Betacoronavirus","Mean Coverage"=1.99039647870886,Topology="linear","Alignment method"="MAFFT Alignment",Created=Mon Mar 09 08:59:37 ECT 2020,URN="urn:local:.:caf-bnocubz","Free end gaps"=true,"Ref Seq Name"="","Molecule Type"="AA"]:0.01233933,((MG772933__Bat_SARS_like_coronavirus_isolate_bat_SL_CoVZC45_:0.00446442,MG772934__Bat_SARS_like_coronavirus_isolate_bat_SL_CoVZXC21_:0.0082086):0.01733376,('KJ473814__BtRs_BetaCoV/HuB2013_':0.07593906,(DQ412043__Bat_SARS_coronavirus_Rm1_:0.01466079,(((FJ211860__Recombinant_coronavirus_clone_Bat_SRBD_spike_glycoprotein_gene_:0.000663,(KF569996__Rhinolophus_affinis_coronavirus_isolate_LYRa11_:0.04864459,((AY390556__SARS_coronavirus_GZ02_[&Organism="SARS coronavirus GZ02","Genetic Code"="Standard",Taxonomy="Viruses; Riboviria; Nidovirales; Cornidovirineae; Coronaviridae; Orthocoronavirinae; Betacoronavirus; Sarbecovirus"]:0.01610405,(KY417146__Bat_SARS_like_coronavirus_isolate_Rs4231_:0.03436505,KT444582__SARS_like_coronavirus_WIV16_:0.00200145):0.00515102):0.03291239,(KY417144__Bat_SARS_like_coronavirus_isolate_Rs4084_:0.02767151,KC881006__Bat_SARS_like_coronavirus_Rs3367_:0.000548):0.04726358):0.05651749):0.23343826):0.04087831,(FJ211859__Recombinant_coronavirus_clone_Bat_SARS_CoV_:0.0,DQ084199__bat_SARS_coronavirus_HKU3_2_:0.000841):0.000856):0.03155056,(DQ071615__Bat_SARS_coronavirus_Rp3_:0.01063228,(('MK211378__Coronavirus_BtRs_BetaCoV/YN2018D_':0.07556229,KY417142__Bat_SARS_like_coronavirus_isolate_As6526_:0.00505426):0.00400922,(KY417148__Bat_SARS_like_coronavirus_isolate_Rs4247_:0.0017277,'MK211375__Coronavirus_BtRs_BetaCoV/YN2018A_':0.00247558):0.00509801):0.00665339):0.00560657):0.01153002):0.06769497):0.26234807):0.1187387):0.16044413); tree bootstrap_75 = [&U] (MN908947__Wuhan_seafood_market_pneumonia_virus_isolate_Wuhan_Hu_1_SARS_CoV_2_:0.00351375,MN996532__Bat_coronavirus_RaTG13_[&Organism="Bat coronavirus RaTG13","Genetic Code"="Standard",Taxonomy="Viruses; Riboviria; Nidovirales; Cornidovirineae; Coronaviridae; unclassified Coronaviridae"]:0.01696507,(MT084071__Pangolin_coronavirus_isolate_MP789_[&"# Nucleotide Sequences With Mates"=0,Organism="Pangolin coronavirus",Description="Pangolin coronavirus isolate MP789 genomic sequence",Modified=Mon Mar 16 16:48:31 ECT 2020,"Genetic Code"="Standard",Taxonomy="Viruses; Riboviria; Nidovirales; Cornidovirineae; Coronaviridae; Orthocoronavirinae; Betacoronavirus; unclassified Betacoronavirus","Mean Coverage"=1.99039647870886,Topology="linear","Alignment method"="MAFFT Alignment",Created=Mon Mar 09 08:59:37 ECT 2020,URN="urn:local:.:caf-bnocubz","Free end gaps"=true,"Ref Seq Name"="","Molecule Type"="AA"]:0.01690604,((MG772934__Bat_SARS_like_coronavirus_isolate_bat_SL_CoVZXC21_:0.01418415,MG772933__Bat_SARS_like_coronavirus_isolate_bat_SL_CoVZC45_:0.00276667):0.0195188,(((('MK211375__Coronavirus_BtRs_BetaCoV/YN2018A_':0.00176493,KY417142__Bat_SARS_like_coronavirus_isolate_As6526_:0.01175873):0.00511077,(KY417148__Bat_SARS_like_coronavirus_isolate_Rs4247_:0.0,('MK211378__Coronavirus_BtRs_BetaCoV/YN2018D_':0.04612948,'KJ473814__BtRs_BetaCoV/HuB2013_':0.13351581):0.04037453):0.0028769):0.00493843,(DQ412043__Bat_SARS_coronavirus_Rm1_:0.02897534,DQ071615__Bat_SARS_coronavirus_Rp3_:0.01069255):0.00842855):0.024899,((FJ211860__Recombinant_coronavirus_clone_Bat_SRBD_spike_glycoprotein_gene_:0.000673,(KF569996__Rhinolophus_affinis_coronavirus_isolate_LYRa11_:0.04479468,((KC881006__Bat_SARS_like_coronavirus_Rs3367_:0.0,KY417144__Bat_SARS_like_coronavirus_isolate_Rs4084_:0.04036738):0.05930824,(KT444582__SARS_like_coronavirus_WIV16_:0.0,(AY390556__SARS_coronavirus_GZ02_[&Organism="SARS coronavirus GZ02","Genetic Code"="Standard",Taxonomy="Viruses; Riboviria; Nidovirales; Cornidovirineae; Coronaviridae; Orthocoronavirinae; Betacoronavirus; Sarbecovirus"]:0.02202946,KY417146__Bat_SARS_like_coronavirus_isolate_Rs4231_:0.04462264):0.00696762):0.03579569):0.06712927):0.21559588):0.05533812,(DQ084199__bat_SARS_coronavirus_HKU3_2_:0.000866,FJ211859__Recombinant_coronavirus_clone_Bat_SARS_CoV_:0.0):0.0):0.0158816):0.29512526):0.1560973):0.12460828); tree bootstrap_76 = [&U] (MN908947__Wuhan_seafood_market_pneumonia_virus_isolate_Wuhan_Hu_1_SARS_CoV_2_:0.00849427,MN996532__Bat_coronavirus_RaTG13_[&Organism="Bat coronavirus RaTG13","Genetic Code"="Standard",Taxonomy="Viruses; Riboviria; Nidovirales; Cornidovirineae; Coronaviridae; unclassified Coronaviridae"]:0.0224588,(MT084071__Pangolin_coronavirus_isolate_MP789_[&"# Nucleotide Sequences With Mates"=0,Organism="Pangolin coronavirus",Description="Pangolin coronavirus isolate MP789 genomic sequence",Modified=Mon Mar 16 16:48:31 ECT 2020,"Genetic Code"="Standard",Taxonomy="Viruses; Riboviria; Nidovirales; Cornidovirineae; Coronaviridae; Orthocoronavirinae; Betacoronavirus; unclassified Betacoronavirus","Mean Coverage"=1.99039647870886,Topology="linear","Alignment method"="MAFFT Alignment",Created=Mon Mar 09 08:59:37 ECT 2020,URN="urn:local:.:caf-bnocubz","Free end gaps"=true,"Ref Seq Name"="","Molecule Type"="AA"]:0.00928299,((MG772934__Bat_SARS_like_coronavirus_isolate_bat_SL_CoVZXC21_:0.01049592,MG772933__Bat_SARS_like_coronavirus_isolate_bat_SL_CoVZC45_:0.00598678):0.01011199,('KJ473814__BtRs_BetaCoV/HuB2013_':0.03632964,(((FJ211860__Recombinant_coronavirus_clone_Bat_SRBD_spike_glycoprotein_gene_:0.0,(KF569996__Rhinolophus_affinis_coronavirus_isolate_LYRa11_:0.05120678,((KC881006__Bat_SARS_like_coronavirus_Rs3367_:0.0021254,KY417144__Bat_SARS_like_coronavirus_isolate_Rs4084_:0.03274626):0.04779118,(AY390556__SARS_coronavirus_GZ02_[&Organism="SARS coronavirus GZ02","Genetic Code"="Standard",Taxonomy="Viruses; Riboviria; Nidovirales; Cornidovirineae; Coronaviridae; Orthocoronavirinae; Betacoronavirus; Sarbecovirus"]:0.02222921,(KY417146__Bat_SARS_like_coronavirus_isolate_Rs4231_:0.03512151,KT444582__SARS_like_coronavirus_WIV16_:0.00307985):0.00810665):0.02002004):0.05990074):0.16771585):0.05596415,(FJ211859__Recombinant_coronavirus_clone_Bat_SARS_CoV_:0.0,DQ084199__bat_SARS_coronavirus_HKU3_2_:0.000827):0.0):0.02189721,((KY417148__Bat_SARS_like_coronavirus_isolate_Rs4247_:0.00114852,('MK211375__Coronavirus_BtRs_BetaCoV/YN2018A_':0.00176245,('MK211378__Coronavirus_BtRs_BetaCoV/YN2018D_':0.06755096,KY417142__Bat_SARS_like_coronavirus_isolate_As6526_:0.00442698):0.0085617):0.00291014):0.00986888,(DQ412043__Bat_SARS_coronavirus_Rm1_:0.0187192,DQ071615__Bat_SARS_coronavirus_Rp3_:0.00824):0.00804551):0.00587184):0.06064735):0.2300267):0.14691016):0.08794518); tree bootstrap_77 = [&U] (MN996532__Bat_coronavirus_RaTG13_[&Organism="Bat coronavirus RaTG13","Genetic Code"="Standard",Taxonomy="Viruses; Riboviria; Nidovirales; Cornidovirineae; Coronaviridae; unclassified Coronaviridae"]:0.01477618,MN908947__Wuhan_seafood_market_pneumonia_virus_isolate_Wuhan_Hu_1_SARS_CoV_2_:0.00803802,(MT084071__Pangolin_coronavirus_isolate_MP789_[&"# Nucleotide Sequences With Mates"=0,Organism="Pangolin coronavirus",Description="Pangolin coronavirus isolate MP789 genomic sequence",Modified=Mon Mar 16 16:48:31 ECT 2020,"Genetic Code"="Standard",Taxonomy="Viruses; Riboviria; Nidovirales; Cornidovirineae; Coronaviridae; Orthocoronavirinae; Betacoronavirus; unclassified Betacoronavirus","Mean Coverage"=1.99039647870886,Topology="linear","Alignment method"="MAFFT Alignment",Created=Mon Mar 09 08:59:37 ECT 2020,URN="urn:local:.:caf-bnocubz","Free end gaps"=true,"Ref Seq Name"="","Molecule Type"="AA"]:0.01616795,((MG772933__Bat_SARS_like_coronavirus_isolate_bat_SL_CoVZC45_:0.00310338,MG772934__Bat_SARS_like_coronavirus_isolate_bat_SL_CoVZXC21_:0.00583259):0.01750808,('KJ473814__BtRs_BetaCoV/HuB2013_':0.0687071,(DQ412043__Bat_SARS_coronavirus_Rm1_:0.01169654,(DQ071615__Bat_SARS_coronavirus_Rp3_:0.00888387,(((FJ211860__Recombinant_coronavirus_clone_Bat_SRBD_spike_glycoprotein_gene_:0.0,(KF569996__Rhinolophus_affinis_coronavirus_isolate_LYRa11_:0.05679818,((KC881006__Bat_SARS_like_coronavirus_Rs3367_:0.00354483,KY417144__Bat_SARS_like_coronavirus_isolate_Rs4084_:0.02324927):0.03805517,(AY390556__SARS_coronavirus_GZ02_[&Organism="SARS coronavirus GZ02","Genetic Code"="Standard",Taxonomy="Viruses; Riboviria; Nidovirales; Cornidovirineae; Coronaviridae; Orthocoronavirinae; Betacoronavirus; Sarbecovirus"]:0.01936144,(KY417146__Bat_SARS_like_coronavirus_isolate_Rs4231_:0.02797948,KT444582__SARS_like_coronavirus_WIV16_:0.00714837):0.00216413):0.03262666):0.04191142):0.17705261):0.05095457,(DQ084199__bat_SARS_coronavirus_HKU3_2_:0.00165874,FJ211859__Recombinant_coronavirus_clone_Bat_SARS_CoV_:0.0):0.0):0.0260783,(KY417148__Bat_SARS_like_coronavirus_isolate_Rs4247_:0.000613,('MK211375__Coronavirus_BtRs_BetaCoV/YN2018A_':0.00278729,('MK211378__Coronavirus_BtRs_BetaCoV/YN2018D_':0.06406619,KY417142__Bat_SARS_like_coronavirus_isolate_As6526_:0.00531992):0.00685665):0.00578352):0.01329501):0.00681704):0.00972274):0.04359632):0.19230669):0.13235013):0.14134487); tree bootstrap_78 = [&U] (MN908947__Wuhan_seafood_market_pneumonia_virus_isolate_Wuhan_Hu_1_SARS_CoV_2_:0.00733118,MN996532__Bat_coronavirus_RaTG13_[&Organism="Bat coronavirus RaTG13","Genetic Code"="Standard",Taxonomy="Viruses; Riboviria; Nidovirales; Cornidovirineae; Coronaviridae; unclassified Coronaviridae"]:0.01604984,(MT084071__Pangolin_coronavirus_isolate_MP789_[&"# Nucleotide Sequences With Mates"=0,Organism="Pangolin coronavirus",Description="Pangolin coronavirus isolate MP789 genomic sequence",Modified=Mon Mar 16 16:48:31 ECT 2020,"Genetic Code"="Standard",Taxonomy="Viruses; Riboviria; Nidovirales; Cornidovirineae; Coronaviridae; Orthocoronavirinae; Betacoronavirus; unclassified Betacoronavirus","Mean Coverage"=1.99039647870886,Topology="linear","Alignment method"="MAFFT Alignment",Created=Mon Mar 09 08:59:37 ECT 2020,URN="urn:local:.:caf-bnocubz","Free end gaps"=true,"Ref Seq Name"="","Molecule Type"="AA"]:0.01661421,((MG772934__Bat_SARS_like_coronavirus_isolate_bat_SL_CoVZXC21_:0.01043426,MG772933__Bat_SARS_like_coronavirus_isolate_bat_SL_CoVZC45_:0.00196723):0.02145447,('KJ473814__BtRs_BetaCoV/HuB2013_':0.06425785,('MK211378__Coronavirus_BtRs_BetaCoV/YN2018D_':0.05643882,(DQ412043__Bat_SARS_coronavirus_Rm1_:0.0187112,(DQ071615__Bat_SARS_coronavirus_Rp3_:0.00639974,((DQ084199__bat_SARS_coronavirus_HKU3_2_:0.0,(FJ211859__Recombinant_coronavirus_clone_Bat_SARS_CoV_:0.0,(FJ211860__Recombinant_coronavirus_clone_Bat_SRBD_spike_glycoprotein_gene_:0.0,(KF569996__Rhinolophus_affinis_coronavirus_isolate_LYRa11_:0.06150687,((KT444582__SARS_like_coronavirus_WIV16_:0.00332253,(KY417146__Bat_SARS_like_coronavirus_isolate_Rs4231_:0.0402513,AY390556__SARS_coronavirus_GZ02_[&Organism="SARS coronavirus GZ02","Genetic Code"="Standard",Taxonomy="Viruses; Riboviria; Nidovirales; Cornidovirineae; Coronaviridae; Orthocoronavirinae; Betacoronavirus; Sarbecovirus"]:0.0139126):0.00422523):0.02817079,(KC881006__Bat_SARS_like_coronavirus_Rs3367_:0.00234008,KY417144__Bat_SARS_like_coronavirus_isolate_Rs4084_:0.03744403):0.04426463):0.04200773):0.19782321):0.0657851):0.0):0.02877302,(KY417148__Bat_SARS_like_coronavirus_isolate_Rs4247_:0.000869,('MK211375__Coronavirus_BtRs_BetaCoV/YN2018A_':0.0,KY417142__Bat_SARS_like_coronavirus_isolate_As6526_:0.0124757):0.00479203):0.00570838):0.00958454):0.00846026):0.02617412):0.03875707):0.19561229):0.1306824):0.08930789); tree bootstrap_79 = [&U] (MN908947__Wuhan_seafood_market_pneumonia_virus_isolate_Wuhan_Hu_1_SARS_CoV_2_:0.00719113,MN996532__Bat_coronavirus_RaTG13_[&Organism="Bat coronavirus RaTG13","Genetic Code"="Standard",Taxonomy="Viruses; Riboviria; Nidovirales; Cornidovirineae; Coronaviridae; unclassified Coronaviridae"]:0.02428382,(MT084071__Pangolin_coronavirus_isolate_MP789_[&"# Nucleotide Sequences With Mates"=0,Organism="Pangolin coronavirus",Description="Pangolin coronavirus isolate MP789 genomic sequence",Modified=Mon Mar 16 16:48:31 ECT 2020,"Genetic Code"="Standard",Taxonomy="Viruses; Riboviria; Nidovirales; Cornidovirineae; Coronaviridae; Orthocoronavirinae; Betacoronavirus; unclassified Betacoronavirus","Mean Coverage"=1.99039647870886,Topology="linear","Alignment method"="MAFFT Alignment",Created=Mon Mar 09 08:59:37 ECT 2020,URN="urn:local:.:caf-bnocubz","Free end gaps"=true,"Ref Seq Name"="","Molecule Type"="AA"]:0.01247465,((MG772933__Bat_SARS_like_coronavirus_isolate_bat_SL_CoVZC45_:0.00492111,MG772934__Bat_SARS_like_coronavirus_isolate_bat_SL_CoVZXC21_:0.01124769):0.01531053,('KJ473814__BtRs_BetaCoV/HuB2013_':0.06846095,('MK211378__Coronavirus_BtRs_BetaCoV/YN2018D_':0.04872713,(KY417148__Bat_SARS_like_coronavirus_isolate_Rs4247_:0.0,((KY417142__Bat_SARS_like_coronavirus_isolate_As6526_:0.01573932,'MK211375__Coronavirus_BtRs_BetaCoV/YN2018A_':0.00261693):0.0042349,((FJ211859__Recombinant_coronavirus_clone_Bat_SARS_CoV_:0.0,(DQ084199__bat_SARS_coronavirus_HKU3_2_:0.00249674,(FJ211860__Recombinant_coronavirus_clone_Bat_SRBD_spike_glycoprotein_gene_:0.000663,(KF569996__Rhinolophus_affinis_coronavirus_isolate_LYRa11_:0.0727899,(AY390556__SARS_coronavirus_GZ02_[&Organism="SARS coronavirus GZ02","Genetic Code"="Standard",Taxonomy="Viruses; Riboviria; Nidovirales; Cornidovirineae; Coronaviridae; Orthocoronavirinae; Betacoronavirus; Sarbecovirus"]:0.01434993,(KY417146__Bat_SARS_like_coronavirus_isolate_Rs4231_:0.04252112,(KT444582__SARS_like_coronavirus_WIV16_:0.000880,(KY417144__Bat_SARS_like_coronavirus_isolate_Rs4084_:0.03982981,KC881006__Bat_SARS_like_coronavirus_Rs3367_:0.0):0.05864911):0.00424387):0.01073305):0.05103518):0.15489573):0.052117):0.0):0.03265629,(DQ071615__Bat_SARS_coronavirus_Rp3_:0.01226923,DQ412043__Bat_SARS_coronavirus_Rm1_:0.03681403):0.01174472):0.00345255):0.00337951):0.02296187):0.03650498):0.2367315):0.15055165):0.1057203); tree bootstrap_80 = [&U] (MN996532__Bat_coronavirus_RaTG13_[&Organism="Bat coronavirus RaTG13","Genetic Code"="Standard",Taxonomy="Viruses; Riboviria; Nidovirales; Cornidovirineae; Coronaviridae; unclassified Coronaviridae"]:0.01851788,MN908947__Wuhan_seafood_market_pneumonia_virus_isolate_Wuhan_Hu_1_SARS_CoV_2_:0.00444395,(MT084071__Pangolin_coronavirus_isolate_MP789_[&"# Nucleotide Sequences With Mates"=0,Organism="Pangolin coronavirus",Description="Pangolin coronavirus isolate MP789 genomic sequence",Modified=Mon Mar 16 16:48:31 ECT 2020,"Genetic Code"="Standard",Taxonomy="Viruses; Riboviria; Nidovirales; Cornidovirineae; Coronaviridae; Orthocoronavirinae; Betacoronavirus; unclassified Betacoronavirus","Mean Coverage"=1.99039647870886,Topology="linear","Alignment method"="MAFFT Alignment",Created=Mon Mar 09 08:59:37 ECT 2020,URN="urn:local:.:caf-bnocubz","Free end gaps"=true,"Ref Seq Name"="","Molecule Type"="AA"]:0.01080373,((MG772934__Bat_SARS_like_coronavirus_isolate_bat_SL_CoVZXC21_:0.00663224,MG772933__Bat_SARS_like_coronavirus_isolate_bat_SL_CoVZC45_:0.00388467):0.04022163,(((FJ211860__Recombinant_coronavirus_clone_Bat_SRBD_spike_glycoprotein_gene_:0.00359271,(KF569996__Rhinolophus_affinis_coronavirus_isolate_LYRa11_:0.05777993,((KY417144__Bat_SARS_like_coronavirus_isolate_Rs4084_:0.04967942,KC881006__Bat_SARS_like_coronavirus_Rs3367_:0.0):0.04584938,(KT444582__SARS_like_coronavirus_WIV16_:0.0,(AY390556__SARS_coronavirus_GZ02_[&Organism="SARS coronavirus GZ02","Genetic Code"="Standard",Taxonomy="Viruses; Riboviria; Nidovirales; Cornidovirineae; Coronaviridae; Orthocoronavirinae; Betacoronavirus; Sarbecovirus"]:0.02961747,KY417146__Bat_SARS_like_coronavirus_isolate_Rs4231_:0.05274507):0.00740827):0.03941776):0.06195678):0.17622286):0.05801864,(DQ084199__bat_SARS_coronavirus_HKU3_2_:0.0,FJ211859__Recombinant_coronavirus_clone_Bat_SARS_CoV_:0.0):0.0):0.00792356,(('MK211375__Coronavirus_BtRs_BetaCoV/YN2018A_':0.00275132,KY417142__Bat_SARS_like_coronavirus_isolate_As6526_:0.01481422):0.00438002,(KY417148__Bat_SARS_like_coronavirus_isolate_Rs4247_:0.000369,(DQ071615__Bat_SARS_coronavirus_Rp3_:0.00818462,(DQ412043__Bat_SARS_coronavirus_Rm1_:0.02215255,('KJ473814__BtRs_BetaCoV/HuB2013_':0.08551579,'MK211378__Coronavirus_BtRs_BetaCoV/YN2018D_':0.0585349):0.03659362):0.01065532):0.01292427):0.00426533):0.02881824):0.26394039):0.16813207):0.12967759); tree bootstrap_81 = [&U] (MN996532__Bat_coronavirus_RaTG13_[&Organism="Bat coronavirus RaTG13","Genetic Code"="Standard",Taxonomy="Viruses; Riboviria; Nidovirales; Cornidovirineae; Coronaviridae; unclassified Coronaviridae"]:0.01546397,MN908947__Wuhan_seafood_market_pneumonia_virus_isolate_Wuhan_Hu_1_SARS_CoV_2_:0.005205,(MT084071__Pangolin_coronavirus_isolate_MP789_[&"# Nucleotide Sequences With Mates"=0,Organism="Pangolin coronavirus",Description="Pangolin coronavirus isolate MP789 genomic sequence",Modified=Mon Mar 16 16:48:31 ECT 2020,"Genetic Code"="Standard",Taxonomy="Viruses; Riboviria; Nidovirales; Cornidovirineae; Coronaviridae; Orthocoronavirinae; Betacoronavirus; unclassified Betacoronavirus","Mean Coverage"=1.99039647870886,Topology="linear","Alignment method"="MAFFT Alignment",Created=Mon Mar 09 08:59:37 ECT 2020,URN="urn:local:.:caf-bnocubz","Free end gaps"=true,"Ref Seq Name"="","Molecule Type"="AA"]:0.01158576,((MG772933__Bat_SARS_like_coronavirus_isolate_bat_SL_CoVZC45_:0.00232044,MG772934__Bat_SARS_like_coronavirus_isolate_bat_SL_CoVZXC21_:0.00896411):0.03129531,((KF569996__Rhinolophus_affinis_coronavirus_isolate_LYRa11_:0.06998956,((KC881006__Bat_SARS_like_coronavirus_Rs3367_:0.0,KY417144__Bat_SARS_like_coronavirus_isolate_Rs4084_:0.02832807):0.05223755,(KT444582__SARS_like_coronavirus_WIV16_:0.00188778,(KY417146__Bat_SARS_like_coronavirus_isolate_Rs4231_:0.03203779,AY390556__SARS_coronavirus_GZ02_[&Organism="SARS coronavirus GZ02","Genetic Code"="Standard",Taxonomy="Viruses; Riboviria; Nidovirales; Cornidovirineae; Coronaviridae; Orthocoronavirinae; Betacoronavirus; Sarbecovirus"]:0.02602896):0.00278429):0.03343054):0.03174539):0.13454966,('KJ473814__BtRs_BetaCoV/HuB2013_':0.06868049,('MK211378__Coronavirus_BtRs_BetaCoV/YN2018D_':0.04045755,(KY417148__Bat_SARS_like_coronavirus_isolate_Rs4247_:0.0,(('MK211375__Coronavirus_BtRs_BetaCoV/YN2018A_':0.00240567,KY417142__Bat_SARS_like_coronavirus_isolate_As6526_:0.01530487):0.00276172,((DQ084199__bat_SARS_coronavirus_HKU3_2_:0.00155999,(FJ211860__Recombinant_coronavirus_clone_Bat_SRBD_spike_glycoprotein_gene_:0.05162457,FJ211859__Recombinant_coronavirus_clone_Bat_SARS_CoV_:0.0):0.0):0.02913564,(DQ071615__Bat_SARS_coronavirus_Rp3_:0.01121216,DQ412043__Bat_SARS_coronavirus_Rm1_:0.02754579):0.01122331):0.00922432):0.00430036):0.03237657):0.04124253):0.05474205):0.15207564):0.12912116):0.12996323); tree bootstrap_82 = [&U] (MN908947__Wuhan_seafood_market_pneumonia_virus_isolate_Wuhan_Hu_1_SARS_CoV_2_:0.00546427,MN996532__Bat_coronavirus_RaTG13_[&Organism="Bat coronavirus RaTG13","Genetic Code"="Standard",Taxonomy="Viruses; Riboviria; Nidovirales; Cornidovirineae; Coronaviridae; unclassified Coronaviridae"]:0.0155031,(MT084071__Pangolin_coronavirus_isolate_MP789_[&"# Nucleotide Sequences With Mates"=0,Organism="Pangolin coronavirus",Description="Pangolin coronavirus isolate MP789 genomic sequence",Modified=Mon Mar 16 16:48:31 ECT 2020,"Genetic Code"="Standard",Taxonomy="Viruses; Riboviria; Nidovirales; Cornidovirineae; Coronaviridae; Orthocoronavirinae; Betacoronavirus; unclassified Betacoronavirus","Mean Coverage"=1.99039647870886,Topology="linear","Alignment method"="MAFFT Alignment",Created=Mon Mar 09 08:59:37 ECT 2020,URN="urn:local:.:caf-bnocubz","Free end gaps"=true,"Ref Seq Name"="","Molecule Type"="AA"]:0.0091542,((MG772933__Bat_SARS_like_coronavirus_isolate_bat_SL_CoVZC45_:0.0033253,MG772934__Bat_SARS_like_coronavirus_isolate_bat_SL_CoVZXC21_:0.01717199):0.09724016,((KF569996__Rhinolophus_affinis_coronavirus_isolate_LYRa11_:0.06702218,((KC881006__Bat_SARS_like_coronavirus_Rs3367_:0.00319543,KY417144__Bat_SARS_like_coronavirus_isolate_Rs4084_:0.03149109):0.07172854,(KY417146__Bat_SARS_like_coronavirus_isolate_Rs4231_:0.03189027,(KT444582__SARS_like_coronavirus_WIV16_:0.00473153,AY390556__SARS_coronavirus_GZ02_[&Organism="SARS coronavirus GZ02","Genetic Code"="Standard",Taxonomy="Viruses; Riboviria; Nidovirales; Cornidovirineae; Coronaviridae; Orthocoronavirinae; Betacoronavirus; Sarbecovirus"]:0.02254442):0.0):0.04307626):0.04537438):0.11574338,(FJ211860__Recombinant_coronavirus_clone_Bat_SRBD_spike_glycoprotein_gene_:0.00423674,((DQ084199__bat_SARS_coronavirus_HKU3_2_:0.000842,FJ211859__Recombinant_coronavirus_clone_Bat_SARS_CoV_:0.0):0.000791,((DQ412043__Bat_SARS_coronavirus_Rm1_:0.0239768,'KJ473814__BtRs_BetaCoV/HuB2013_':0.1225078):0.00489847,(DQ071615__Bat_SARS_coronavirus_Rp3_:0.00500623,(('MK211375__Coronavirus_BtRs_BetaCoV/YN2018A_':0.00165543,KY417148__Bat_SARS_like_coronavirus_isolate_Rs4247_:0.000854):0.00246557,(KY417142__Bat_SARS_like_coronavirus_isolate_As6526_:0.00942142,'MK211378__Coronavirus_BtRs_BetaCoV/YN2018D_':0.07527504):0.00337113):0.01302096):0.00347339):0.02825891):0.05124156):0.11143256):0.19891721):0.06535285):0.12867794); tree bootstrap_83 = [&U] (MN996532__Bat_coronavirus_RaTG13_[&Organism="Bat coronavirus RaTG13","Genetic Code"="Standard",Taxonomy="Viruses; Riboviria; Nidovirales; Cornidovirineae; Coronaviridae; unclassified Coronaviridae"]:0.01409379,MN908947__Wuhan_seafood_market_pneumonia_virus_isolate_Wuhan_Hu_1_SARS_CoV_2_:0.00305191,(MT084071__Pangolin_coronavirus_isolate_MP789_[&"# Nucleotide Sequences With Mates"=0,Organism="Pangolin coronavirus",Description="Pangolin coronavirus isolate MP789 genomic sequence",Modified=Mon Mar 16 16:48:31 ECT 2020,"Genetic Code"="Standard",Taxonomy="Viruses; Riboviria; Nidovirales; Cornidovirineae; Coronaviridae; Orthocoronavirinae; Betacoronavirus; unclassified Betacoronavirus","Mean Coverage"=1.99039647870886,Topology="linear","Alignment method"="MAFFT Alignment",Created=Mon Mar 09 08:59:37 ECT 2020,URN="urn:local:.:caf-bnocubz","Free end gaps"=true,"Ref Seq Name"="","Molecule Type"="AA"]:0.00649427,((MG772933__Bat_SARS_like_coronavirus_isolate_bat_SL_CoVZC45_:0.00470136,MG772934__Bat_SARS_like_coronavirus_isolate_bat_SL_CoVZXC21_:0.01033741):0.07946743,((KF569996__Rhinolophus_affinis_coronavirus_isolate_LYRa11_:0.04348815,((KY417144__Bat_SARS_like_coronavirus_isolate_Rs4084_:0.0263225,KC881006__Bat_SARS_like_coronavirus_Rs3367_:0.00315758):0.04452462,(KY417146__Bat_SARS_like_coronavirus_isolate_Rs4231_:0.02997349,(KT444582__SARS_like_coronavirus_WIV16_:0.00440834,AY390556__SARS_coronavirus_GZ02_[&Organism="SARS coronavirus GZ02","Genetic Code"="Standard",Taxonomy="Viruses; Riboviria; Nidovirales; Cornidovirineae; Coronaviridae; Orthocoronavirinae; Betacoronavirus; Sarbecovirus"]:0.02435877):0.0):0.02110679):0.02929754):0.0826438,(FJ211860__Recombinant_coronavirus_clone_Bat_SRBD_spike_glycoprotein_gene_:0.00195564,((FJ211859__Recombinant_coronavirus_clone_Bat_SARS_CoV_:0.0,DQ084199__bat_SARS_coronavirus_HKU3_2_:0.00418953):0.0,((DQ071615__Bat_SARS_coronavirus_Rp3_:0.00890794,(DQ412043__Bat_SARS_coronavirus_Rm1_:0.01806584,('KJ473814__BtRs_BetaCoV/HuB2013_':0.07327788,'MK211378__Coronavirus_BtRs_BetaCoV/YN2018D_':0.05063526):0.02466378):0.00853016):0.00333759,(KY417142__Bat_SARS_like_coronavirus_isolate_As6526_:0.01091979,(KY417148__Bat_SARS_like_coronavirus_isolate_Rs4247_:0.00250743,'MK211375__Coronavirus_BtRs_BetaCoV/YN2018A_':0.00484625):0.00152132):0.00363534):0.03548945):0.05253361):0.09366119):0.14841011):0.05904856):0.08928885); tree bootstrap_84 = [&U] (MN908947__Wuhan_seafood_market_pneumonia_virus_isolate_Wuhan_Hu_1_SARS_CoV_2_:0.0,MN996532__Bat_coronavirus_RaTG13_[&Organism="Bat coronavirus RaTG13","Genetic Code"="Standard",Taxonomy="Viruses; Riboviria; Nidovirales; Cornidovirineae; Coronaviridae; unclassified Coronaviridae"]:0.01975737,(MT084071__Pangolin_coronavirus_isolate_MP789_[&"# Nucleotide Sequences With Mates"=0,Organism="Pangolin coronavirus",Description="Pangolin coronavirus isolate MP789 genomic sequence",Modified=Mon Mar 16 16:48:31 ECT 2020,"Genetic Code"="Standard",Taxonomy="Viruses; Riboviria; Nidovirales; Cornidovirineae; Coronaviridae; Orthocoronavirinae; Betacoronavirus; unclassified Betacoronavirus","Mean Coverage"=1.99039647870886,Topology="linear","Alignment method"="MAFFT Alignment",Created=Mon Mar 09 08:59:37 ECT 2020,URN="urn:local:.:caf-bnocubz","Free end gaps"=true,"Ref Seq Name"="","Molecule Type"="AA"]:0.01167221,((MG772933__Bat_SARS_like_coronavirus_isolate_bat_SL_CoVZC45_:0.00321739,MG772934__Bat_SARS_like_coronavirus_isolate_bat_SL_CoVZXC21_:0.01016989):0.02996382,('KJ473814__BtRs_BetaCoV/HuB2013_':0.05840045,(DQ412043__Bat_SARS_coronavirus_Rm1_:0.01534725,(((FJ211860__Recombinant_coronavirus_clone_Bat_SRBD_spike_glycoprotein_gene_:0.00250489,(KF569996__Rhinolophus_affinis_coronavirus_isolate_LYRa11_:0.07701085,(AY390556__SARS_coronavirus_GZ02_[&Organism="SARS coronavirus GZ02","Genetic Code"="Standard",Taxonomy="Viruses; Riboviria; Nidovirales; Cornidovirineae; Coronaviridae; Orthocoronavirinae; Betacoronavirus; Sarbecovirus"]:0.01800855,((KT444582__SARS_like_coronavirus_WIV16_:0.000867,(KY417144__Bat_SARS_like_coronavirus_isolate_Rs4084_:0.03045932,KC881006__Bat_SARS_like_coronavirus_Rs3367_:0.000356):0.06361444):0.00752865,KY417146__Bat_SARS_like_coronavirus_isolate_Rs4231_:0.02811398):0.00513764):0.0668685):0.19699005):0.04960536,(FJ211859__Recombinant_coronavirus_clone_Bat_SARS_CoV_:0.0,DQ084199__bat_SARS_coronavirus_HKU3_2_:0.00163343):0.0):0.02341396,(DQ071615__Bat_SARS_coronavirus_Rp3_:0.01506274,(KY417148__Bat_SARS_like_coronavirus_isolate_Rs4247_:0.00364926,('MK211375__Coronavirus_BtRs_BetaCoV/YN2018A_':0.0,(KY417142__Bat_SARS_like_coronavirus_isolate_As6526_:0.00237435,'MK211378__Coronavirus_BtRs_BetaCoV/YN2018D_':0.07059476):0.00586122):0.00121461):0.01208387):0.00580065):0.00903105):0.04902021):0.18962286):0.11310073):0.10340984); tree bootstrap_85 = [&U] (MN996532__Bat_coronavirus_RaTG13_[&Organism="Bat coronavirus RaTG13","Genetic Code"="Standard",Taxonomy="Viruses; Riboviria; Nidovirales; Cornidovirineae; Coronaviridae; unclassified Coronaviridae"]:0.0193966,MN908947__Wuhan_seafood_market_pneumonia_virus_isolate_Wuhan_Hu_1_SARS_CoV_2_:0.00782486,(MT084071__Pangolin_coronavirus_isolate_MP789_[&"# Nucleotide Sequences With Mates"=0,Organism="Pangolin coronavirus",Description="Pangolin coronavirus isolate MP789 genomic sequence",Modified=Mon Mar 16 16:48:31 ECT 2020,"Genetic Code"="Standard",Taxonomy="Viruses; Riboviria; Nidovirales; Cornidovirineae; Coronaviridae; Orthocoronavirinae; Betacoronavirus; unclassified Betacoronavirus","Mean Coverage"=1.99039647870886,Topology="linear","Alignment method"="MAFFT Alignment",Created=Mon Mar 09 08:59:37 ECT 2020,URN="urn:local:.:caf-bnocubz","Free end gaps"=true,"Ref Seq Name"="","Molecule Type"="AA"]:0.02384443,((MG772933__Bat_SARS_like_coronavirus_isolate_bat_SL_CoVZC45_:0.00415856,MG772934__Bat_SARS_like_coronavirus_isolate_bat_SL_CoVZXC21_:0.0111434):0.0394376,('KJ473814__BtRs_BetaCoV/HuB2013_':0.05749243,(DQ412043__Bat_SARS_coronavirus_Rm1_:0.04187082,(((FJ211860__Recombinant_coronavirus_clone_Bat_SRBD_spike_glycoprotein_gene_:0.0,(KF569996__Rhinolophus_affinis_coronavirus_isolate_LYRa11_:0.05316262,((AY390556__SARS_coronavirus_GZ02_[&Organism="SARS coronavirus GZ02","Genetic Code"="Standard",Taxonomy="Viruses; Riboviria; Nidovirales; Cornidovirineae; Coronaviridae; Orthocoronavirinae; Betacoronavirus; Sarbecovirus"]:0.01477352,(KY417146__Bat_SARS_like_coronavirus_isolate_Rs4231_:0.03334943,KT444582__SARS_like_coronavirus_WIV16_:0.00488108):0.00105007):0.0340744,(KY417144__Bat_SARS_like_coronavirus_isolate_Rs4084_:0.03352909,KC881006__Bat_SARS_like_coronavirus_Rs3367_:0.00227332):0.04277652):0.06338452):0.20277606):0.07008307,(DQ084199__bat_SARS_coronavirus_HKU3_2_:0.000847,FJ211859__Recombinant_coronavirus_clone_Bat_SARS_CoV_:0.0):0.0):0.02267017,(DQ071615__Bat_SARS_coronavirus_Rp3_:0.01777648,(KY417148__Bat_SARS_like_coronavirus_isolate_Rs4247_:0.0018074,('MK211375__Coronavirus_BtRs_BetaCoV/YN2018A_':0.0,(KY417142__Bat_SARS_like_coronavirus_isolate_As6526_:0.00498067,'MK211378__Coronavirus_BtRs_BetaCoV/YN2018D_':0.0731722):0.00801639):0.00502134):0.01109613):0.00484142):0.00618915):0.05601813):0.20826826):0.1612986):0.11686529); tree bootstrap_86 = [&U] (MN908947__Wuhan_seafood_market_pneumonia_virus_isolate_Wuhan_Hu_1_SARS_CoV_2_:0.00185458,MN996532__Bat_coronavirus_RaTG13_[&Organism="Bat coronavirus RaTG13","Genetic Code"="Standard",Taxonomy="Viruses; Riboviria; Nidovirales; Cornidovirineae; Coronaviridae; unclassified Coronaviridae"]:0.02086958,(MT084071__Pangolin_coronavirus_isolate_MP789_[&"# Nucleotide Sequences With Mates"=0,Organism="Pangolin coronavirus",Description="Pangolin coronavirus isolate MP789 genomic sequence",Modified=Mon Mar 16 16:48:31 ECT 2020,"Genetic Code"="Standard",Taxonomy="Viruses; Riboviria; Nidovirales; Cornidovirineae; Coronaviridae; Orthocoronavirinae; Betacoronavirus; unclassified Betacoronavirus","Mean Coverage"=1.99039647870886,Topology="linear","Alignment method"="MAFFT Alignment",Created=Mon Mar 09 08:59:37 ECT 2020,URN="urn:local:.:caf-bnocubz","Free end gaps"=true,"Ref Seq Name"="","Molecule Type"="AA"]:0.02546394,((MG772933__Bat_SARS_like_coronavirus_isolate_bat_SL_CoVZC45_:0.00166991,MG772934__Bat_SARS_like_coronavirus_isolate_bat_SL_CoVZXC21_:0.00927118):0.11301282,((KF569996__Rhinolophus_affinis_coronavirus_isolate_LYRa11_:0.0648952,((KC881006__Bat_SARS_like_coronavirus_Rs3367_:0.00227971,KY417144__Bat_SARS_like_coronavirus_isolate_Rs4084_:0.03203079):0.06985604,(AY390556__SARS_coronavirus_GZ02_[&Organism="SARS coronavirus GZ02","Genetic Code"="Standard",Taxonomy="Viruses; Riboviria; Nidovirales; Cornidovirineae; Coronaviridae; Orthocoronavirinae; Betacoronavirus; Sarbecovirus"]:0.02408548,(KT444582__SARS_like_coronavirus_WIV16_:0.00497042,KY417146__Bat_SARS_like_coronavirus_isolate_Rs4231_:0.03481019):0.00107707):0.02918126):0.0531928):0.11244717,(FJ211860__Recombinant_coronavirus_clone_Bat_SRBD_spike_glycoprotein_gene_:0.0014515,(FJ211859__Recombinant_coronavirus_clone_Bat_SARS_CoV_:0.0,(DQ084199__bat_SARS_coronavirus_HKU3_2_:0.000849,((DQ412043__Bat_SARS_coronavirus_Rm1_:0.02552833,'KJ473814__BtRs_BetaCoV/HuB2013_':0.1366011):0.00767795,(DQ071615__Bat_SARS_coronavirus_Rp3_:0.01566738,(KY417148__Bat_SARS_like_coronavirus_isolate_Rs4247_:0.00188468,('MK211375__Coronavirus_BtRs_BetaCoV/YN2018A_':0.00267313,(KY417142__Bat_SARS_like_coronavirus_isolate_As6526_:0.00611483,'MK211378__Coronavirus_BtRs_BetaCoV/YN2018D_':0.09633039):0.00618034):0.00572844):0.00699022):0.0053856):0.02443857):0.0):0.05288686):0.09623503):0.21781214):0.05942666):0.12172366); tree bootstrap_87 = [&U] (MN908947__Wuhan_seafood_market_pneumonia_virus_isolate_Wuhan_Hu_1_SARS_CoV_2_:0.00485634,MN996532__Bat_coronavirus_RaTG13_[&Organism="Bat coronavirus RaTG13","Genetic Code"="Standard",Taxonomy="Viruses; Riboviria; Nidovirales; Cornidovirineae; Coronaviridae; unclassified Coronaviridae"]:0.01696788,(MT084071__Pangolin_coronavirus_isolate_MP789_[&"# Nucleotide Sequences With Mates"=0,Organism="Pangolin coronavirus",Description="Pangolin coronavirus isolate MP789 genomic sequence",Modified=Mon Mar 16 16:48:31 ECT 2020,"Genetic Code"="Standard",Taxonomy="Viruses; Riboviria; Nidovirales; Cornidovirineae; Coronaviridae; Orthocoronavirinae; Betacoronavirus; unclassified Betacoronavirus","Mean Coverage"=1.99039647870886,Topology="linear","Alignment method"="MAFFT Alignment",Created=Mon Mar 09 08:59:37 ECT 2020,URN="urn:local:.:caf-bnocubz","Free end gaps"=true,"Ref Seq Name"="","Molecule Type"="AA"]:0.01791785,((MG772933__Bat_SARS_like_coronavirus_isolate_bat_SL_CoVZC45_:0.00852323,MG772934__Bat_SARS_like_coronavirus_isolate_bat_SL_CoVZXC21_:0.00874775):0.03004779,('KJ473814__BtRs_BetaCoV/HuB2013_':0.05254669,(((DQ084199__bat_SARS_coronavirus_HKU3_2_:0.00162319,(FJ211859__Recombinant_coronavirus_clone_Bat_SARS_CoV_:0.0,(FJ211860__Recombinant_coronavirus_clone_Bat_SRBD_spike_glycoprotein_gene_:0.0,(KF569996__Rhinolophus_affinis_coronavirus_isolate_LYRa11_:0.07791125,(AY390556__SARS_coronavirus_GZ02_[&Organism="SARS coronavirus GZ02","Genetic Code"="Standard",Taxonomy="Viruses; Riboviria; Nidovirales; Cornidovirineae; Coronaviridae; Orthocoronavirinae; Betacoronavirus; Sarbecovirus"]:0.0123331,(KY417146__Bat_SARS_like_coronavirus_isolate_Rs4231_:0.03959691,(KT444582__SARS_like_coronavirus_WIV16_:0.0,(KY417144__Bat_SARS_like_coronavirus_isolate_Rs4084_:0.04289874,KC881006__Bat_SARS_like_coronavirus_Rs3367_:0.00101714):0.06466654):0.00753658):0.00627957):0.04156479):0.15354428):0.06823):0.0):0.02559358,(KY417148__Bat_SARS_like_coronavirus_isolate_Rs4247_:0.0,('MK211375__Coronavirus_BtRs_BetaCoV/YN2018A_':0.00182326,(KY417142__Bat_SARS_like_coronavirus_isolate_As6526_:0.00508124,'MK211378__Coronavirus_BtRs_BetaCoV/YN2018D_':0.05756749):0.00927772):0.00631345):0.00717392):0.000875,(DQ071615__Bat_SARS_coronavirus_Rp3_:0.00555828,DQ412043__Bat_SARS_coronavirus_Rm1_:0.02670596):0.00565797):0.0431239):0.18075607):0.14395256):0.087704); tree bootstrap_88 = [&U] (MN996532__Bat_coronavirus_RaTG13_[&Organism="Bat coronavirus RaTG13","Genetic Code"="Standard",Taxonomy="Viruses; Riboviria; Nidovirales; Cornidovirineae; Coronaviridae; unclassified Coronaviridae"]:0.01502133,MN908947__Wuhan_seafood_market_pneumonia_virus_isolate_Wuhan_Hu_1_SARS_CoV_2_:0.00608974,(MT084071__Pangolin_coronavirus_isolate_MP789_[&"# Nucleotide Sequences With Mates"=0,Organism="Pangolin coronavirus",Description="Pangolin coronavirus isolate MP789 genomic sequence",Modified=Mon Mar 16 16:48:31 ECT 2020,"Genetic Code"="Standard",Taxonomy="Viruses; Riboviria; Nidovirales; Cornidovirineae; Coronaviridae; Orthocoronavirinae; Betacoronavirus; unclassified Betacoronavirus","Mean Coverage"=1.99039647870886,Topology="linear","Alignment method"="MAFFT Alignment",Created=Mon Mar 09 08:59:37 ECT 2020,URN="urn:local:.:caf-bnocubz","Free end gaps"=true,"Ref Seq Name"="","Molecule Type"="AA"]:0.02903667,((MG772934__Bat_SARS_like_coronavirus_isolate_bat_SL_CoVZXC21_:0.011612,MG772933__Bat_SARS_like_coronavirus_isolate_bat_SL_CoVZC45_:0.00373912):0.01870608,('KJ473814__BtRs_BetaCoV/HuB2013_':0.06849329,(DQ412043__Bat_SARS_coronavirus_Rm1_:0.02312682,(((FJ211860__Recombinant_coronavirus_clone_Bat_SRBD_spike_glycoprotein_gene_:0.0,(KF569996__Rhinolophus_affinis_coronavirus_isolate_LYRa11_:0.05833418,((AY390556__SARS_coronavirus_GZ02_[&Organism="SARS coronavirus GZ02","Genetic Code"="Standard",Taxonomy="Viruses; Riboviria; Nidovirales; Cornidovirineae; Coronaviridae; Orthocoronavirinae; Betacoronavirus; Sarbecovirus"]:0.02190491,(KY417146__Bat_SARS_like_coronavirus_isolate_Rs4231_:0.03213875,KT444582__SARS_like_coronavirus_WIV16_:0.00565219):0.00348325):0.02460635,(KC881006__Bat_SARS_like_coronavirus_Rs3367_:0.00453458,KY417144__Bat_SARS_like_coronavirus_isolate_Rs4084_:0.02964297):0.05043028):0.0428733):0.19046411):0.05492382,(DQ084199__bat_SARS_coronavirus_HKU3_2_:0.000848,FJ211859__Recombinant_coronavirus_clone_Bat_SARS_CoV_:0.0):0.0):0.02825901,(DQ071615__Bat_SARS_coronavirus_Rp3_:0.01173996,(KY417148__Bat_SARS_like_coronavirus_isolate_Rs4247_:0.000807,('MK211375__Coronavirus_BtRs_BetaCoV/YN2018A_':0.0,('MK211378__Coronavirus_BtRs_BetaCoV/YN2018D_':0.05698571,KY417142__Bat_SARS_like_coronavirus_isolate_As6526_:0.00335891):0.00880577):0.00429161):0.01085697):0.00243154):0.00728048):0.06101363):0.22390311):0.15447303):0.1202592); tree bootstrap_89 = [&U] (MN908947__Wuhan_seafood_market_pneumonia_virus_isolate_Wuhan_Hu_1_SARS_CoV_2_:0.00451226,MN996532__Bat_coronavirus_RaTG13_[&Organism="Bat coronavirus RaTG13","Genetic Code"="Standard",Taxonomy="Viruses; Riboviria; Nidovirales; Cornidovirineae; Coronaviridae; unclassified Coronaviridae"]:0.02320094,(MT084071__Pangolin_coronavirus_isolate_MP789_[&"# Nucleotide Sequences With Mates"=0,Organism="Pangolin coronavirus",Description="Pangolin coronavirus isolate MP789 genomic sequence",Modified=Mon Mar 16 16:48:31 ECT 2020,"Genetic Code"="Standard",Taxonomy="Viruses; Riboviria; Nidovirales; Cornidovirineae; Coronaviridae; Orthocoronavirinae; Betacoronavirus; unclassified Betacoronavirus","Mean Coverage"=1.99039647870886,Topology="linear","Alignment method"="MAFFT Alignment",Created=Mon Mar 09 08:59:37 ECT 2020,URN="urn:local:.:caf-bnocubz","Free end gaps"=true,"Ref Seq Name"="","Molecule Type"="AA"]:0.01666552,((MG772934__Bat_SARS_like_coronavirus_isolate_bat_SL_CoVZXC21_:0.01126316,MG772933__Bat_SARS_like_coronavirus_isolate_bat_SL_CoVZC45_:0.00726531):0.02077531,('KJ473814__BtRs_BetaCoV/HuB2013_':0.08331875,('MK211378__Coronavirus_BtRs_BetaCoV/YN2018D_':0.02511542,(KY417142__Bat_SARS_like_coronavirus_isolate_As6526_:0.00509646,((DQ071615__Bat_SARS_coronavirus_Rp3_:0.00596087,DQ412043__Bat_SARS_coronavirus_Rm1_:0.02991781):0.01564365,('MK211375__Coronavirus_BtRs_BetaCoV/YN2018A_':0.00156611,(KY417148__Bat_SARS_like_coronavirus_isolate_Rs4247_:0.00160897,((FJ211860__Recombinant_coronavirus_clone_Bat_SRBD_spike_glycoprotein_gene_:0.0,(KF569996__Rhinolophus_affinis_coronavirus_isolate_LYRa11_:0.05650056,((KC881006__Bat_SARS_like_coronavirus_Rs3367_:0.0,KY417144__Bat_SARS_like_coronavirus_isolate_Rs4084_:0.04309868):0.04815281,(KT444582__SARS_like_coronavirus_WIV16_:0.0,(KY417146__Bat_SARS_like_coronavirus_isolate_Rs4231_:0.04507541,AY390556__SARS_coronavirus_GZ02_[&Organism="SARS coronavirus GZ02","Genetic Code"="Standard",Taxonomy="Viruses; Riboviria; Nidovirales; Cornidovirineae; Coronaviridae; Orthocoronavirinae; Betacoronavirus; Sarbecovirus"]:0.02182992):0.00598849):0.02970568):0.04453473):0.20965608):0.05728837,(DQ084199__bat_SARS_coronavirus_HKU3_2_:0.0,FJ211859__Recombinant_coronavirus_clone_Bat_SARS_CoV_:0.0):0.0):0.03499206):0.000845):0.0056673):0.00179392):0.04531428):0.04927647):0.22986664):0.14788208):0.12144121); tree bootstrap_90 = [&U] (MN908947__Wuhan_seafood_market_pneumonia_virus_isolate_Wuhan_Hu_1_SARS_CoV_2_:0.00514542,MN996532__Bat_coronavirus_RaTG13_[&Organism="Bat coronavirus RaTG13","Genetic Code"="Standard",Taxonomy="Viruses; Riboviria; Nidovirales; Cornidovirineae; Coronaviridae; unclassified Coronaviridae"]:0.01871489,(MT084071__Pangolin_coronavirus_isolate_MP789_[&"# Nucleotide Sequences With Mates"=0,Organism="Pangolin coronavirus",Description="Pangolin coronavirus isolate MP789 genomic sequence",Modified=Mon Mar 16 16:48:31 ECT 2020,"Genetic Code"="Standard",Taxonomy="Viruses; Riboviria; Nidovirales; Cornidovirineae; Coronaviridae; Orthocoronavirinae; Betacoronavirus; unclassified Betacoronavirus","Mean Coverage"=1.99039647870886,Topology="linear","Alignment method"="MAFFT Alignment",Created=Mon Mar 09 08:59:37 ECT 2020,URN="urn:local:.:caf-bnocubz","Free end gaps"=true,"Ref Seq Name"="","Molecule Type"="AA"]:0.03201575,((MG772934__Bat_SARS_like_coronavirus_isolate_bat_SL_CoVZXC21_:0.01529929,MG772933__Bat_SARS_like_coronavirus_isolate_bat_SL_CoVZC45_:0.0020718):0.08842923,((KF569996__Rhinolophus_affinis_coronavirus_isolate_LYRa11_:0.07954234,(AY390556__SARS_coronavirus_GZ02_[&Organism="SARS coronavirus GZ02","Genetic Code"="Standard",Taxonomy="Viruses; Riboviria; Nidovirales; Cornidovirineae; Coronaviridae; Orthocoronavirinae; Betacoronavirus; Sarbecovirus"]:0.01843864,(KY417146__Bat_SARS_like_coronavirus_isolate_Rs4231_:0.03512043,(KT444582__SARS_like_coronavirus_WIV16_:0.000904,(KC881006__Bat_SARS_like_coronavirus_Rs3367_:0.0,KY417144__Bat_SARS_like_coronavirus_isolate_Rs4084_:0.03601014):0.06970865):0.00212017):0.00805546):0.04419641):0.09263214,(FJ211860__Recombinant_coronavirus_clone_Bat_SRBD_spike_glycoprotein_gene_:0.000851,(FJ211859__Recombinant_coronavirus_clone_Bat_SARS_CoV_:0.0,(DQ084199__bat_SARS_coronavirus_HKU3_2_:0.00166594,((DQ071615__Bat_SARS_coronavirus_Rp3_:0.0113078,(KY417148__Bat_SARS_like_coronavirus_isolate_Rs4247_:0.000651,('MK211375__Coronavirus_BtRs_BetaCoV/YN2018A_':0.0,(KY417142__Bat_SARS_like_coronavirus_isolate_As6526_:0.00511268,'MK211378__Coronavirus_BtRs_BetaCoV/YN2018D_':0.08054755):0.00832773):0.00516362):0.0113828):0.00774732,(DQ412043__Bat_SARS_coronavirus_Rm1_:0.02003388,'KJ473814__BtRs_BetaCoV/HuB2013_':0.1115931):0.00793503):0.0344705):0.0):0.05873202):0.11809575):0.17991128):0.0632897):0.08755859); tree bootstrap_91 = [&U] (MN908947__Wuhan_seafood_market_pneumonia_virus_isolate_Wuhan_Hu_1_SARS_CoV_2_:0.00321121,MN996532__Bat_coronavirus_RaTG13_[&Organism="Bat coronavirus RaTG13","Genetic Code"="Standard",Taxonomy="Viruses; Riboviria; Nidovirales; Cornidovirineae; Coronaviridae; unclassified Coronaviridae"]:0.02879113,(MT084071__Pangolin_coronavirus_isolate_MP789_[&"# Nucleotide Sequences With Mates"=0,Organism="Pangolin coronavirus",Description="Pangolin coronavirus isolate MP789 genomic sequence",Modified=Mon Mar 16 16:48:31 ECT 2020,"Genetic Code"="Standard",Taxonomy="Viruses; Riboviria; Nidovirales; Cornidovirineae; Coronaviridae; Orthocoronavirinae; Betacoronavirus; unclassified Betacoronavirus","Mean Coverage"=1.99039647870886,Topology="linear","Alignment method"="MAFFT Alignment",Created=Mon Mar 09 08:59:37 ECT 2020,URN="urn:local:.:caf-bnocubz","Free end gaps"=true,"Ref Seq Name"="","Molecule Type"="AA"]:0.02108335,((MG772933__Bat_SARS_like_coronavirus_isolate_bat_SL_CoVZC45_:0.00158012,MG772934__Bat_SARS_like_coronavirus_isolate_bat_SL_CoVZXC21_:0.0054577):0.04212946,('KJ473814__BtRs_BetaCoV/HuB2013_':0.06236641,(DQ412043__Bat_SARS_coronavirus_Rm1_:0.0214968,(((FJ211860__Recombinant_coronavirus_clone_Bat_SRBD_spike_glycoprotein_gene_:0.000546,(KF569996__Rhinolophus_affinis_coronavirus_isolate_LYRa11_:0.07530648,((KC881006__Bat_SARS_like_coronavirus_Rs3367_:0.00126744,KY417144__Bat_SARS_like_coronavirus_isolate_Rs4084_:0.04655708):0.0494386,(KT444582__SARS_like_coronavirus_WIV16_:0.0,(KY417146__Bat_SARS_like_coronavirus_isolate_Rs4231_:0.04837926,AY390556__SARS_coronavirus_GZ02_[&Organism="SARS coronavirus GZ02","Genetic Code"="Standard",Taxonomy="Viruses; Riboviria; Nidovirales; Cornidovirineae; Coronaviridae; Orthocoronavirinae; Betacoronavirus; Sarbecovirus"]:0.02671109):0.00557757):0.04445038):0.05836033):0.22976927):0.06416997,(FJ211859__Recombinant_coronavirus_clone_Bat_SARS_CoV_:0.0,DQ084199__bat_SARS_coronavirus_HKU3_2_:0.00172153):0.0):0.03160342,(DQ071615__Bat_SARS_coronavirus_Rp3_:0.00809984,(KY417148__Bat_SARS_like_coronavirus_isolate_Rs4247_:0.00145855,('MK211375__Coronavirus_BtRs_BetaCoV/YN2018A_':0.000929,('MK211378__Coronavirus_BtRs_BetaCoV/YN2018D_':0.07427759,KY417142__Bat_SARS_like_coronavirus_isolate_As6526_:0.00343296):0.00714037):0.00539141):0.0158493):0.00179253):0.01260732):0.05084206):0.17540422):0.13407902):0.11984013); tree bootstrap_92 = [&U] (MN908947__Wuhan_seafood_market_pneumonia_virus_isolate_Wuhan_Hu_1_SARS_CoV_2_:0.00750509,MN996532__Bat_coronavirus_RaTG13_[&Organism="Bat coronavirus RaTG13","Genetic Code"="Standard",Taxonomy="Viruses; Riboviria; Nidovirales; Cornidovirineae; Coronaviridae; unclassified Coronaviridae"]:0.0149898,(MT084071__Pangolin_coronavirus_isolate_MP789_[&"# Nucleotide Sequences With Mates"=0,Organism="Pangolin coronavirus",Description="Pangolin coronavirus isolate MP789 genomic sequence",Modified=Mon Mar 16 16:48:31 ECT 2020,"Genetic Code"="Standard",Taxonomy="Viruses; Riboviria; Nidovirales; Cornidovirineae; Coronaviridae; Orthocoronavirinae; Betacoronavirus; unclassified Betacoronavirus","Mean Coverage"=1.99039647870886,Topology="linear","Alignment method"="MAFFT Alignment",Created=Mon Mar 09 08:59:37 ECT 2020,URN="urn:local:.:caf-bnocubz","Free end gaps"=true,"Ref Seq Name"="","Molecule Type"="AA"]:0.02547934,((MG772933__Bat_SARS_like_coronavirus_isolate_bat_SL_CoVZC45_:0.00707913,MG772934__Bat_SARS_like_coronavirus_isolate_bat_SL_CoVZXC21_:0.00443784):0.02163812,((KF569996__Rhinolophus_affinis_coronavirus_isolate_LYRa11_:0.07060003,((KC881006__Bat_SARS_like_coronavirus_Rs3367_:0.000485,KY417144__Bat_SARS_like_coronavirus_isolate_Rs4084_:0.03026726):0.04699642,(KT444582__SARS_like_coronavirus_WIV16_:0.0,(AY390556__SARS_coronavirus_GZ02_[&Organism="SARS coronavirus GZ02","Genetic Code"="Standard",Taxonomy="Viruses; Riboviria; Nidovirales; Cornidovirineae; Coronaviridae; Orthocoronavirinae; Betacoronavirus; Sarbecovirus"]:0.02587059,KY417146__Bat_SARS_like_coronavirus_isolate_Rs4231_:0.02704892):0.00765712):0.03013639):0.03450603):0.14149221,('KJ473814__BtRs_BetaCoV/HuB2013_':0.05801513,('MK211378__Coronavirus_BtRs_BetaCoV/YN2018D_':0.04583904,(KY417148__Bat_SARS_like_coronavirus_isolate_Rs4247_:0.0,(('MK211375__Coronavirus_BtRs_BetaCoV/YN2018A_':0.00158409,KY417142__Bat_SARS_like_coronavirus_isolate_As6526_:0.01494388):0.00547763,((FJ211860__Recombinant_coronavirus_clone_Bat_SRBD_spike_glycoprotein_gene_:0.0576181,(DQ084199__bat_SARS_coronavirus_HKU3_2_:0.00162861,FJ211859__Recombinant_coronavirus_clone_Bat_SARS_CoV_:0.0):0.0):0.02615442,(DQ071615__Bat_SARS_coronavirus_Rp3_:0.00737251,DQ412043__Bat_SARS_coronavirus_Rm1_:0.0348208):0.00522398):0.00799135):0.0018332):0.04510267):0.02841946):0.06890274):0.15245885):0.1317856):0.11036312); tree bootstrap_93 = [&U] (MN996532__Bat_coronavirus_RaTG13_[&Organism="Bat coronavirus RaTG13","Genetic Code"="Standard",Taxonomy="Viruses; Riboviria; Nidovirales; Cornidovirineae; Coronaviridae; unclassified Coronaviridae"]:0.01622892,MN908947__Wuhan_seafood_market_pneumonia_virus_isolate_Wuhan_Hu_1_SARS_CoV_2_:0.00298205,(MT084071__Pangolin_coronavirus_isolate_MP789_[&"# Nucleotide Sequences With Mates"=0,Organism="Pangolin coronavirus",Description="Pangolin coronavirus isolate MP789 genomic sequence",Modified=Mon Mar 16 16:48:31 ECT 2020,"Genetic Code"="Standard",Taxonomy="Viruses; Riboviria; Nidovirales; Cornidovirineae; Coronaviridae; Orthocoronavirinae; Betacoronavirus; unclassified Betacoronavirus","Mean Coverage"=1.99039647870886,Topology="linear","Alignment method"="MAFFT Alignment",Created=Mon Mar 09 08:59:37 ECT 2020,URN="urn:local:.:caf-bnocubz","Free end gaps"=true,"Ref Seq Name"="","Molecule Type"="AA"]:0.01604455,((MG772934__Bat_SARS_like_coronavirus_isolate_bat_SL_CoVZXC21_:0.00416311,MG772933__Bat_SARS_like_coronavirus_isolate_bat_SL_CoVZC45_:0.00344963):0.02072422,('KJ473814__BtRs_BetaCoV/HuB2013_':0.07111889,((DQ071615__Bat_SARS_coronavirus_Rp3_:0.01876936,DQ412043__Bat_SARS_coronavirus_Rm1_:0.0262428):0.00721673,(((FJ211860__Recombinant_coronavirus_clone_Bat_SRBD_spike_glycoprotein_gene_:0.0013354,(KF569996__Rhinolophus_affinis_coronavirus_isolate_LYRa11_:0.06993632,((KC881006__Bat_SARS_like_coronavirus_Rs3367_:0.000422,KY417144__Bat_SARS_like_coronavirus_isolate_Rs4084_:0.0363653):0.0528346,(KT444582__SARS_like_coronavirus_WIV16_:0.00116645,(KY417146__Bat_SARS_like_coronavirus_isolate_Rs4231_:0.03911515,AY390556__SARS_coronavirus_GZ02_[&Organism="SARS coronavirus GZ02","Genetic Code"="Standard",Taxonomy="Viruses; Riboviria; Nidovirales; Cornidovirineae; Coronaviridae; Orthocoronavirinae; Betacoronavirus; Sarbecovirus"]:0.02522269):0.00289529):0.02589574):0.05065174):0.19145926):0.05389799,(FJ211859__Recombinant_coronavirus_clone_Bat_SARS_CoV_:0.0,DQ084199__bat_SARS_coronavirus_HKU3_2_:0.0):0.0):0.02325224,(KY417148__Bat_SARS_like_coronavirus_isolate_Rs4247_:0.00226868,('MK211375__Coronavirus_BtRs_BetaCoV/YN2018A_':0.00373835,(KY417142__Bat_SARS_like_coronavirus_isolate_As6526_:0.00476115,'MK211378__Coronavirus_BtRs_BetaCoV/YN2018D_':0.07336038):0.00799805):0.0025876):0.01321238):0.00287107):0.04984344):0.22135714):0.1425181):0.1106824); tree bootstrap_94 = [&U] (MN996532__Bat_coronavirus_RaTG13_[&Organism="Bat coronavirus RaTG13","Genetic Code"="Standard",Taxonomy="Viruses; Riboviria; Nidovirales; Cornidovirineae; Coronaviridae; unclassified Coronaviridae"]:0.01496406,MN908947__Wuhan_seafood_market_pneumonia_virus_isolate_Wuhan_Hu_1_SARS_CoV_2_:0.00321394,(MT084071__Pangolin_coronavirus_isolate_MP789_[&"# Nucleotide Sequences With Mates"=0,Organism="Pangolin coronavirus",Description="Pangolin coronavirus isolate MP789 genomic sequence",Modified=Mon Mar 16 16:48:31 ECT 2020,"Genetic Code"="Standard",Taxonomy="Viruses; Riboviria; Nidovirales; Cornidovirineae; Coronaviridae; Orthocoronavirinae; Betacoronavirus; unclassified Betacoronavirus","Mean Coverage"=1.99039647870886,Topology="linear","Alignment method"="MAFFT Alignment",Created=Mon Mar 09 08:59:37 ECT 2020,URN="urn:local:.:caf-bnocubz","Free end gaps"=true,"Ref Seq Name"="","Molecule Type"="AA"]:0.01988797,((MG772933__Bat_SARS_like_coronavirus_isolate_bat_SL_CoVZC45_:0.00449355,MG772934__Bat_SARS_like_coronavirus_isolate_bat_SL_CoVZXC21_:0.01037205):0.01514904,('KJ473814__BtRs_BetaCoV/HuB2013_':0.06631577,((FJ211859__Recombinant_coronavirus_clone_Bat_SARS_CoV_:0.0,(DQ084199__bat_SARS_coronavirus_HKU3_2_:0.0,(FJ211860__Recombinant_coronavirus_clone_Bat_SRBD_spike_glycoprotein_gene_:0.00212573,(KF569996__Rhinolophus_affinis_coronavirus_isolate_LYRa11_:0.05951014,((KY417144__Bat_SARS_like_coronavirus_isolate_Rs4084_:0.03316042,KC881006__Bat_SARS_like_coronavirus_Rs3367_:0.000625):0.049287,(AY390556__SARS_coronavirus_GZ02_[&Organism="SARS coronavirus GZ02","Genetic Code"="Standard",Taxonomy="Viruses; Riboviria; Nidovirales; Cornidovirineae; Coronaviridae; Orthocoronavirinae; Betacoronavirus; Sarbecovirus"]:0.02368025,(KT444582__SARS_like_coronavirus_WIV16_:0.00192631,KY417146__Bat_SARS_like_coronavirus_isolate_Rs4231_:0.03697232):0.00399046):0.02130904):0.03565214):0.1526638):0.0533331):0.0):0.01597066,((KY417148__Bat_SARS_like_coronavirus_isolate_Rs4247_:0.0,('MK211375__Coronavirus_BtRs_BetaCoV/YN2018A_':0.0,('MK211378__Coronavirus_BtRs_BetaCoV/YN2018D_':0.06531233,KY417142__Bat_SARS_like_coronavirus_isolate_As6526_:0.00815593):0.00698998):0.00573934):0.01160518,(DQ412043__Bat_SARS_coronavirus_Rm1_:0.01964442,DQ071615__Bat_SARS_coronavirus_Rp3_:0.0087671):0.01059629):0.00797186):0.04746225):0.18389777):0.12346289):0.0982676); tree bootstrap_95 = [&U] (MN908947__Wuhan_seafood_market_pneumonia_virus_isolate_Wuhan_Hu_1_SARS_CoV_2_:0.00530225,MN996532__Bat_coronavirus_RaTG13_[&Organism="Bat coronavirus RaTG13","Genetic Code"="Standard",Taxonomy="Viruses; Riboviria; Nidovirales; Cornidovirineae; Coronaviridae; unclassified Coronaviridae"]:0.00909183,(MT084071__Pangolin_coronavirus_isolate_MP789_[&"# Nucleotide Sequences With Mates"=0,Organism="Pangolin coronavirus",Description="Pangolin coronavirus isolate MP789 genomic sequence",Modified=Mon Mar 16 16:48:31 ECT 2020,"Genetic Code"="Standard",Taxonomy="Viruses; Riboviria; Nidovirales; Cornidovirineae; Coronaviridae; Orthocoronavirinae; Betacoronavirus; unclassified Betacoronavirus","Mean Coverage"=1.99039647870886,Topology="linear","Alignment method"="MAFFT Alignment",Created=Mon Mar 09 08:59:37 ECT 2020,URN="urn:local:.:caf-bnocubz","Free end gaps"=true,"Ref Seq Name"="","Molecule Type"="AA"]:0.01633573,((MG772934__Bat_SARS_like_coronavirus_isolate_bat_SL_CoVZXC21_:0.00195963,MG772933__Bat_SARS_like_coronavirus_isolate_bat_SL_CoVZC45_:0.00485858):0.0735053,((KF569996__Rhinolophus_affinis_coronavirus_isolate_LYRa11_:0.05233103,((KT444582__SARS_like_coronavirus_WIV16_:0.00114895,(AY390556__SARS_coronavirus_GZ02_[&Organism="SARS coronavirus GZ02","Genetic Code"="Standard",Taxonomy="Viruses; Riboviria; Nidovirales; Cornidovirineae; Coronaviridae; Orthocoronavirinae; Betacoronavirus; Sarbecovirus"]:0.02344776,KY417146__Bat_SARS_like_coronavirus_isolate_Rs4231_:0.03853221):0.00399257):0.04342177,(KY417144__Bat_SARS_like_coronavirus_isolate_Rs4084_:0.0371583,KC881006__Bat_SARS_like_coronavirus_Rs3367_:0.0):0.03770516):0.05377863):0.10962424,(FJ211860__Recombinant_coronavirus_clone_Bat_SRBD_spike_glycoprotein_gene_:0.00494131,((FJ211859__Recombinant_coronavirus_clone_Bat_SARS_CoV_:0.0,DQ084199__bat_SARS_coronavirus_HKU3_2_:0.00343898):0.000949,((DQ412043__Bat_SARS_coronavirus_Rm1_:0.02155747,'KJ473814__BtRs_BetaCoV/HuB2013_':0.12870513):0.01567378,(DQ071615__Bat_SARS_coronavirus_Rp3_:0.01266652,((KY417142__Bat_SARS_like_coronavirus_isolate_As6526_:0.000806,'MK211378__Coronavirus_BtRs_BetaCoV/YN2018D_':0.07951241):0.00662183,('MK211375__Coronavirus_BtRs_BetaCoV/YN2018A_':0.00174505,KY417148__Bat_SARS_like_coronavirus_isolate_Rs4247_:0.00254593):0.00565492):0.0099625):0.00651375):0.02261155):0.0418812):0.09892702):0.22599031):0.11159768):0.13325422); tree bootstrap_96 = [&U] (MN908947__Wuhan_seafood_market_pneumonia_virus_isolate_Wuhan_Hu_1_SARS_CoV_2_:0.00853207,MN996532__Bat_coronavirus_RaTG13_[&Organism="Bat coronavirus RaTG13","Genetic Code"="Standard",Taxonomy="Viruses; Riboviria; Nidovirales; Cornidovirineae; Coronaviridae; unclassified Coronaviridae"]:0.02605737,(MT084071__Pangolin_coronavirus_isolate_MP789_[&"# Nucleotide Sequences With Mates"=0,Organism="Pangolin coronavirus",Description="Pangolin coronavirus isolate MP789 genomic sequence",Modified=Mon Mar 16 16:48:31 ECT 2020,"Genetic Code"="Standard",Taxonomy="Viruses; Riboviria; Nidovirales; Cornidovirineae; Coronaviridae; Orthocoronavirinae; Betacoronavirus; unclassified Betacoronavirus","Mean Coverage"=1.99039647870886,Topology="linear","Alignment method"="MAFFT Alignment",Created=Mon Mar 09 08:59:37 ECT 2020,URN="urn:local:.:caf-bnocubz","Free end gaps"=true,"Ref Seq Name"="","Molecule Type"="AA"]:0.02084135,((MG772933__Bat_SARS_like_coronavirus_isolate_bat_SL_CoVZC45_:0.00444545,MG772934__Bat_SARS_like_coronavirus_isolate_bat_SL_CoVZXC21_:0.01034313):0.02639563,('KJ473814__BtRs_BetaCoV/HuB2013_':0.06890276,('MK211378__Coronavirus_BtRs_BetaCoV/YN2018D_':0.03499427,(KY417148__Bat_SARS_like_coronavirus_isolate_Rs4247_:0.0,((DQ084199__bat_SARS_coronavirus_HKU3_2_:0.0,(FJ211859__Recombinant_coronavirus_clone_Bat_SARS_CoV_:0.0,(FJ211860__Recombinant_coronavirus_clone_Bat_SRBD_spike_glycoprotein_gene_:0.0,(KF569996__Rhinolophus_affinis_coronavirus_isolate_LYRa11_:0.06806778,(AY390556__SARS_coronavirus_GZ02_[&Organism="SARS coronavirus GZ02","Genetic Code"="Standard",Taxonomy="Viruses; Riboviria; Nidovirales; Cornidovirineae; Coronaviridae; Orthocoronavirinae; Betacoronavirus; Sarbecovirus"]:0.00677307,(KY417146__Bat_SARS_like_coronavirus_isolate_Rs4231_:0.04430002,(KT444582__SARS_like_coronavirus_WIV16_:0.0,(KY417144__Bat_SARS_like_coronavirus_isolate_Rs4084_:0.04675183,KC881006__Bat_SARS_like_coronavirus_Rs3367_:0.000076):0.0651709):0.00532177):0.00727042):0.05916455):0.15270306):0.06576343):0.0):0.03422083,('MK211375__Coronavirus_BtRs_BetaCoV/YN2018A_':0.0,(KY417142__Bat_SARS_like_coronavirus_isolate_As6526_:0.01249453,(DQ412043__Bat_SARS_coronavirus_Rm1_:0.02730609,DQ071615__Bat_SARS_coronavirus_Rp3_:0.00817356):0.00928457):0.00870984):0.000843):0.00230712):0.03615494):0.03938341):0.16130999):0.13994531):0.07648124); tree bootstrap_97 = [&U] (MN996532__Bat_coronavirus_RaTG13_[&Organism="Bat coronavirus RaTG13","Genetic Code"="Standard",Taxonomy="Viruses; Riboviria; Nidovirales; Cornidovirineae; Coronaviridae; unclassified Coronaviridae"]:0.01346093,MN908947__Wuhan_seafood_market_pneumonia_virus_isolate_Wuhan_Hu_1_SARS_CoV_2_:0.00586005,(MT084071__Pangolin_coronavirus_isolate_MP789_[&"# Nucleotide Sequences With Mates"=0,Organism="Pangolin coronavirus",Description="Pangolin coronavirus isolate MP789 genomic sequence",Modified=Mon Mar 16 16:48:31 ECT 2020,"Genetic Code"="Standard",Taxonomy="Viruses; Riboviria; Nidovirales; Cornidovirineae; Coronaviridae; Orthocoronavirinae; Betacoronavirus; unclassified Betacoronavirus","Mean Coverage"=1.99039647870886,Topology="linear","Alignment method"="MAFFT Alignment",Created=Mon Mar 09 08:59:37 ECT 2020,URN="urn:local:.:caf-bnocubz","Free end gaps"=true,"Ref Seq Name"="","Molecule Type"="AA"]:0.01180441,((MG772933__Bat_SARS_like_coronavirus_isolate_bat_SL_CoVZC45_:0.00334771,MG772934__Bat_SARS_like_coronavirus_isolate_bat_SL_CoVZXC21_:0.01037542):0.01291114,('KJ473814__BtRs_BetaCoV/HuB2013_':0.0649856,(DQ412043__Bat_SARS_coronavirus_Rm1_:0.01545391,(DQ071615__Bat_SARS_coronavirus_Rp3_:0.0138354,(((FJ211860__Recombinant_coronavirus_clone_Bat_SRBD_spike_glycoprotein_gene_:0.0,(KF569996__Rhinolophus_affinis_coronavirus_isolate_LYRa11_:0.04895658,((KY417144__Bat_SARS_like_coronavirus_isolate_Rs4084_:0.03750259,KC881006__Bat_SARS_like_coronavirus_Rs3367_:0.000108):0.06224523,(AY390556__SARS_coronavirus_GZ02_[&Organism="SARS coronavirus GZ02","Genetic Code"="Standard",Taxonomy="Viruses; Riboviria; Nidovirales; Cornidovirineae; Coronaviridae; Orthocoronavirinae; Betacoronavirus; Sarbecovirus"]:0.02124095,(KT444582__SARS_like_coronavirus_WIV16_:0.00485637,KY417146__Bat_SARS_like_coronavirus_isolate_Rs4231_:0.03568656):0.00208701):0.02946794):0.05387869):0.20118743):0.05958164,(DQ084199__bat_SARS_coronavirus_HKU3_2_:0.0,FJ211859__Recombinant_coronavirus_clone_Bat_SARS_CoV_:0.0):0.0):0.02736011,(KY417148__Bat_SARS_like_coronavirus_isolate_Rs4247_:0.00168979,('MK211375__Coronavirus_BtRs_BetaCoV/YN2018A_':0.00263094,(KY417142__Bat_SARS_like_coronavirus_isolate_As6526_:0.00351785,'MK211378__Coronavirus_BtRs_BetaCoV/YN2018D_':0.06236387):0.00677362):0.00323476):0.00693007):0.00526812):0.01389599):0.05927508):0.22993443):0.15564718):0.10853335); tree bootstrap_98 = [&U] (MN996532__Bat_coronavirus_RaTG13_[&Organism="Bat coronavirus RaTG13","Genetic Code"="Standard",Taxonomy="Viruses; Riboviria; Nidovirales; Cornidovirineae; Coronaviridae; unclassified Coronaviridae"]:0.02204708,MN908947__Wuhan_seafood_market_pneumonia_virus_isolate_Wuhan_Hu_1_SARS_CoV_2_:0.00405898,(MT084071__Pangolin_coronavirus_isolate_MP789_[&"# Nucleotide Sequences With Mates"=0,Organism="Pangolin coronavirus",Description="Pangolin coronavirus isolate MP789 genomic sequence",Modified=Mon Mar 16 16:48:31 ECT 2020,"Genetic Code"="Standard",Taxonomy="Viruses; Riboviria; Nidovirales; Cornidovirineae; Coronaviridae; Orthocoronavirinae; Betacoronavirus; unclassified Betacoronavirus","Mean Coverage"=1.99039647870886,Topology="linear","Alignment method"="MAFFT Alignment",Created=Mon Mar 09 08:59:37 ECT 2020,URN="urn:local:.:caf-bnocubz","Free end gaps"=true,"Ref Seq Name"="","Molecule Type"="AA"]:0.01778269,((MG772933__Bat_SARS_like_coronavirus_isolate_bat_SL_CoVZC45_:0.00628115,MG772934__Bat_SARS_like_coronavirus_isolate_bat_SL_CoVZXC21_:0.00620705):0.10785375,((KF569996__Rhinolophus_affinis_coronavirus_isolate_LYRa11_:0.0518462,((KY417144__Bat_SARS_like_coronavirus_isolate_Rs4084_:0.04245961,KC881006__Bat_SARS_like_coronavirus_Rs3367_:0.0):0.03943134,(KT444582__SARS_like_coronavirus_WIV16_:0.00119591,(KY417146__Bat_SARS_like_coronavirus_isolate_Rs4231_:0.04709364,AY390556__SARS_coronavirus_GZ02_[&Organism="SARS coronavirus GZ02","Genetic Code"="Standard",Taxonomy="Viruses; Riboviria; Nidovirales; Cornidovirineae; Coronaviridae; Orthocoronavirinae; Betacoronavirus; Sarbecovirus"]:0.02439808):0.00577804):0.03259159):0.04743003):0.09955062,(FJ211860__Recombinant_coronavirus_clone_Bat_SRBD_spike_glycoprotein_gene_:0.0,(FJ211859__Recombinant_coronavirus_clone_Bat_SARS_CoV_:0.0,(DQ084199__bat_SARS_coronavirus_HKU3_2_:0.0,((DQ071615__Bat_SARS_coronavirus_Rp3_:0.01494652,(KY417148__Bat_SARS_like_coronavirus_isolate_Rs4247_:0.00143005,('MK211375__Coronavirus_BtRs_BetaCoV/YN2018A_':0.000869,(KY417142__Bat_SARS_like_coronavirus_isolate_As6526_:0.00328108,'MK211378__Coronavirus_BtRs_BetaCoV/YN2018D_':0.08468194):0.01022534):0.0046935):0.01416182):0.00963858,('KJ473814__BtRs_BetaCoV/HuB2013_':0.09995861,DQ412043__Bat_SARS_coronavirus_Rm1_:0.02018086):0.01275561):0.02955595):0.0):0.05889624):0.11574891):0.21114006):0.07893481):0.11542908); tree bootstrap_99 = [&U] (MN996532__Bat_coronavirus_RaTG13_[&Organism="Bat coronavirus RaTG13","Genetic Code"="Standard",Taxonomy="Viruses; Riboviria; Nidovirales; Cornidovirineae; Coronaviridae; unclassified Coronaviridae"]:0.019236,MN908947__Wuhan_seafood_market_pneumonia_virus_isolate_Wuhan_Hu_1_SARS_CoV_2_:0.00616752,(MT084071__Pangolin_coronavirus_isolate_MP789_[&"# Nucleotide Sequences With Mates"=0,Organism="Pangolin coronavirus",Description="Pangolin coronavirus isolate MP789 genomic sequence",Modified=Mon Mar 16 16:48:31 ECT 2020,"Genetic Code"="Standard",Taxonomy="Viruses; Riboviria; Nidovirales; Cornidovirineae; Coronaviridae; Orthocoronavirinae; Betacoronavirus; unclassified Betacoronavirus","Mean Coverage"=1.99039647870886,Topology="linear","Alignment method"="MAFFT Alignment",Created=Mon Mar 09 08:59:37 ECT 2020,URN="urn:local:.:caf-bnocubz","Free end gaps"=true,"Ref Seq Name"="","Molecule Type"="AA"]:0.01498828,((MG772933__Bat_SARS_like_coronavirus_isolate_bat_SL_CoVZC45_:0.00376084,MG772934__Bat_SARS_like_coronavirus_isolate_bat_SL_CoVZXC21_:0.00879428):0.0227184,('KJ473814__BtRs_BetaCoV/HuB2013_':0.05521173,(DQ412043__Bat_SARS_coronavirus_Rm1_:0.02162467,((FJ211859__Recombinant_coronavirus_clone_Bat_SARS_CoV_:0.0,(DQ084199__bat_SARS_coronavirus_HKU3_2_:0.0,(FJ211860__Recombinant_coronavirus_clone_Bat_SRBD_spike_glycoprotein_gene_:0.0,(KF569996__Rhinolophus_affinis_coronavirus_isolate_LYRa11_:0.05101484,((KY417144__Bat_SARS_like_coronavirus_isolate_Rs4084_:0.02966691,KC881006__Bat_SARS_like_coronavirus_Rs3367_:0.00275377):0.05023332,(AY390556__SARS_coronavirus_GZ02_[&Organism="SARS coronavirus GZ02","Genetic Code"="Standard",Taxonomy="Viruses; Riboviria; Nidovirales; Cornidovirineae; Coronaviridae; Orthocoronavirinae; Betacoronavirus; Sarbecovirus"]:0.01651335,(KY417146__Bat_SARS_like_coronavirus_isolate_Rs4231_:0.03426897,KT444582__SARS_like_coronavirus_WIV16_:0.00218804):0.00415458):0.01716248):0.04154939):0.17531094):0.06004081):0.0):0.02284307,(DQ071615__Bat_SARS_coronavirus_Rp3_:0.01098844,(KY417148__Bat_SARS_like_coronavirus_isolate_Rs4247_:0.000770,('MK211375__Coronavirus_BtRs_BetaCoV/YN2018A_':0.00258879,(KY417142__Bat_SARS_like_coronavirus_isolate_As6526_:0.00865209,'MK211378__Coronavirus_BtRs_BetaCoV/YN2018D_':0.06966733):0.00734843):0.00323036):0.01141589):0.00258923):0.00939824):0.04141486):0.19938694):0.14947128):0.11291725); tree bootstrap_100 = [&U] (MN996532__Bat_coronavirus_RaTG13_[&Organism="Bat coronavirus RaTG13","Genetic Code"="Standard",Taxonomy="Viruses; Riboviria; Nidovirales; Cornidovirineae; Coronaviridae; unclassified Coronaviridae"]:0.02035538,MN908947__Wuhan_seafood_market_pneumonia_virus_isolate_Wuhan_Hu_1_SARS_CoV_2_:0.00150466,(MT084071__Pangolin_coronavirus_isolate_MP789_[&"# Nucleotide Sequences With Mates"=0,Organism="Pangolin coronavirus",Description="Pangolin coronavirus isolate MP789 genomic sequence",Modified=Mon Mar 16 16:48:31 ECT 2020,"Genetic Code"="Standard",Taxonomy="Viruses; Riboviria; Nidovirales; Cornidovirineae; Coronaviridae; Orthocoronavirinae; Betacoronavirus; unclassified Betacoronavirus","Mean Coverage"=1.99039647870886,Topology="linear","Alignment method"="MAFFT Alignment",Created=Mon Mar 09 08:59:37 ECT 2020,URN="urn:local:.:caf-bnocubz","Free end gaps"=true,"Ref Seq Name"="","Molecule Type"="AA"]:0.01926738,((MG772934__Bat_SARS_like_coronavirus_isolate_bat_SL_CoVZXC21_:0.01132608,MG772933__Bat_SARS_like_coronavirus_isolate_bat_SL_CoVZC45_:0.00473682):0.03091681,('KJ473814__BtRs_BetaCoV/HuB2013_':0.07366355,(DQ412043__Bat_SARS_coronavirus_Rm1_:0.01825404,(DQ071615__Bat_SARS_coronavirus_Rp3_:0.01557212,((KY417148__Bat_SARS_like_coronavirus_isolate_Rs4247_:0.000903,('MK211375__Coronavirus_BtRs_BetaCoV/YN2018A_':0.000929,(KY417142__Bat_SARS_like_coronavirus_isolate_As6526_:0.00603946,'MK211378__Coronavirus_BtRs_BetaCoV/YN2018D_':0.06484048):0.00869086):0.00239257):0.00614004,((FJ211860__Recombinant_coronavirus_clone_Bat_SRBD_spike_glycoprotein_gene_:0.0,(KF569996__Rhinolophus_affinis_coronavirus_isolate_LYRa11_:0.04407467,((KY417144__Bat_SARS_like_coronavirus_isolate_Rs4084_:0.03621963,KC881006__Bat_SARS_like_coronavirus_Rs3367_:0.000434):0.05417481,(KT444582__SARS_like_coronavirus_WIV16_:0.00139753,(KY417146__Bat_SARS_like_coronavirus_isolate_Rs4231_:0.04126011,AY390556__SARS_coronavirus_GZ02_[&Organism="SARS coronavirus GZ02","Genetic Code"="Standard",Taxonomy="Viruses; Riboviria; Nidovirales; Cornidovirineae; Coronaviridae; Orthocoronavirinae; Betacoronavirus; Sarbecovirus"]:0.02165371):0.00230425):0.02550496):0.05783615):0.170025):0.05436478,(DQ084199__bat_SARS_coronavirus_HKU3_2_:0.000838,FJ211859__Recombinant_coronavirus_clone_Bat_SARS_CoV_:0.0):0.0):0.01956918):0.00649147):0.01009338):0.033375):0.21055149):0.14804435):0.12033348); end;