#NEXUS [ ============= Summary Trees ============= Summary trees generated by SumTrees. Summarization Information ------------------------- Trees read from 1 source(s): - '/Users/carlrothfels/Desktop/RADanalyses/allboots/Ilex24_allBoots.tre' Total of 600 trees analyzed for summarization: - All trees were treated as unweighted - All trees were unrooted - 29 unique taxa across all trees - 2460 unique splits out of a total of 31823 splits - 2430 unique non-trivial splits counted out of a total of non-trivial 13823 splits Summarizing onto target tree defined in '/Users/carlrothfels/Desktop/RADanalyses/allbests/Ilex24.best.tre': - Support values expressed as proportions or probabilities - Edge lengths as given on target trees - Support and other summarization annotations added to target trees as metadata Program Information ------------------- SumTrees 4.4.0 by Jeet Sukumaran and Mark T. Holder DendroPy version : DendroPy 4.4.0 () DendroPy location : /usr/local/Cellar/python/2.7.11/Frameworks/Python.framework/Versions/2.7/lib/python2.7/site-packages/dendropy Python version : 2.7.11 (default, Dec 25 2015, 18:10:30) [GCC 4.2.1 Compatible Apple LLVM 5.1 (clang-503.0.40)] Python executable : /usr/local/Cellar/python/2.7.11/Frameworks/Python.framework/Versions/2.7/Resources/Python.app/Contents/MacOS/Python Python site packages : ['/usr/local/Cellar/python/2.7.11/Frameworks/Python.framework/Versions/2.7/lib/python2.7/site-packages', '/usr/local/Cellar/python/2.7.11/Frameworks/Python.framework/Versions/2.7/lib/site-python', '/Library/Python/2.7/site-packages'] Execution Information --------------------- Executed on Macintosh-99 by carlrothfels@Macintosh-99 Working directory: '/Users/carlrothfels/Desktop/RADanalyses/allbests' Started at: 2019-08-20 19:32:41.989907 Ended at: 2019-08-20 19:32:45.389014 Total elapsed time: 3.399107 seconds Actual analysis time: 2.835395 seconds Citation Information -------------------- Sukumaran, J and MT Holder. 2010. DendroPy: a Python library for phylogenetic computing. Bioinformatics 26: 1569-1571. Sukumaran, J and MT Holder. SumTrees: Phylogenetic Tree Summarization. 4.4.0. Available at https://github.com/jeetsukumaran/DendroPy. ] BEGIN TAXA; DIMENSIONS NTAX=29; TAXLABELS Ilex_opaca_BL_2U_N122.assembled Ilex_opaca_BL_3F_N123.assembled Ilex_opaca_BL_4F_N124.assembled Ilex_opaca_BL_6U_N126.assembled Ilex_opaca_GP_12_UN47.assembled Ilex_opaca_GP_1U_N36.assembled Ilex_opaca_GP_9U_N44.assembled Ilex_opaca_JK_1U_N90.assembled Ilex_opaca_JK_3U_N92.assembled Ilex_opaca_JK_5U_N94.assembled Ilex_opaca_MD_4U_N100.assembled Ilex_opaca_MD_6F_N102.assembled Ilex_opaca_RR_1U_N116.assembled Ilex_opaca_RR_2U_N117.assembled Ilex_opaca_RR_3U_N118.assembled Ilex_opaca_SH_1U_N69.assembled Ilex_opaca_SH_2U_N70.assembled Ilex_opaca_SH_3U_N71.assembled Ilex_opaca_SH_4U_N72.assembled Ilex_opaca_SP_4U_N56.assembled Ilex_opaca_SP_5U_N57.assembled Ilex_opaca_SP_6U_N58.assembled Ilex_opaca_SP_7U_N59.assembled Ilex_opaca_SV_11_UN23.assembled Ilex_opaca_SV_12_UN24.assembled Ilex_opaca_SV_2U_N14.assembled Ilex_opaca_SV_4U_N16.assembled Ilex_opaca_SV_8U_N20.assembled Ilex_opaca_SV_9U_N21.assembled ; END; BEGIN TREES; TREE bestREP1 = [&U] [!GarliScore -55542.441642][!GarliModel M1 r 1.41319 3.40192 1.08472 1.50897 4.44919 1.00000 e 0.29916 0.19293 0.17939 0.32852 a 0.54781 p 0.97973 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END;