#NEXUS [ Title 16s to be combined with dloop sequences] begin taxa; dimensions ntax= 26; taxlabels 16S_AGP05_13X 16S_AGP06_02X 16S_AGP06_07X 16S_AGP06_11X 16S_AGP07_01X 16S_AGP08_13X 16S_Alamu02in 16S_Alamu07XX 16S_Amida04XX 16S_Amoza06XX 16S_Amoza08XX 16S_Apiai03XX 16S_Asaba06XX 16S_KGP19_03X 16S_KGP19_04X 16S_KGP19_10X 16S_KGP19_13X 16S_KGP20_04X 16S_KGP20_05X 16S_KGP21_09X 16S_KGP22_03X 16S_KGP23_01X 16S_KGP23_03X 16S_Kgazi06XX 16S_Kgazi18XX 16S_Ssey14XXX ; end; begin characters; dimensions nchar= 492; format missing=? gap=- matchchar=. datatype=nucleotide interleave=yes; matrix [!Domain=Data;] 16S_AGP05_13X CGTAATCATTTGTCTTTTAAATGAAGACCAGTATGAATGGCATAACGAGGGCCAAGCTGTCTCCTTTTTCCAGTCAATGA 16S_AGP06_02X ........C....................................................................... 16S_AGP06_07X ........C....................................................................... 16S_AGP06_11X ........C....................................................................... 16S_AGP07_01X ................................................................................ 16S_AGP08_13X ................................................................................ 16S_Alamu02in ........C....................................................................... 16S_Alamu07XX ........C....................................................................... 16S_Amida04XX ........C....................................................................... 16S_Amoza06XX ........C....................................................................... 16S_Amoza08XX ........C....................................................................... 16S_Apiai03XX ................................................................................ 16S_Asaba06XX ................................................................................ 16S_KGP19_03X ........C..............G.............................T.......................... 16S_KGP19_04X ........C..............G.............................T.......................... 16S_KGP19_10X ........C..............G.............................T.......................... 16S_KGP19_13X ........C..............G.............................T.......................... 16S_KGP20_04X ................................................................................ 16S_KGP20_05X ................................................................................ 16S_KGP21_09X ................................................................................ 16S_KGP22_03X ................................................................................ 16S_KGP23_01X ................................................................................ 16S_KGP23_03X ........C..............G.............................T.......................... 16S_Kgazi06XX ................................................................................ 16S_Kgazi18XX ................................................................................ 16S_Ssey14XXX ................................................................................ 16S_AGP05_13X AATTGATCCCCCTGTGCAGAAGCAGGGACACAAACATAAGACGAGAAGACCCTATGGAGCTTAAGACACAAGACAGTTCA 16S_AGP06_02X ....A..TT...................TG..C...........................................CC.. 16S_AGP06_07X ....A..TT...................TG..C...........................................CC.. 16S_AGP06_11X ....A..TT...................TG..C...........................................CC.. 16S_AGP07_01X ................................................................................ 16S_AGP08_13X ................................................................................ 16S_Alamu02in ....A..TT...................T...TC..........................................CC.. 16S_Alamu07XX ....A..TT...................T...TC..........................................CC.. 16S_Amida04XX ....A..TT...................T...TC..........................................CC.. 16S_Amoza06XX ....A..TT...................T...TC..........................................CC.. 16S_Amoza08XX ....A..TT...................T...TC..........................................CC.. 16S_Apiai03XX ................................................................................ 16S_Asaba06XX ................................................................................ 16S_KGP19_03X .......TT...................T.A.C...................................T.......CC.. 16S_KGP19_04X .......TT...................T.A.C...................................T.......CC.. 16S_KGP19_10X .......TT...................T.A.C...................................T.......CC.. 16S_KGP19_13X .......TT...................T.A.C...................................T.......CC.. 16S_KGP20_04X .......TT...................TC.................................................. 16S_KGP20_05X .......TT...................TC.................................................. 16S_KGP21_09X .......TT...................TC.................................................. 16S_KGP22_03X .......TT...................TC.................................................. 16S_KGP23_01X .......TT...................TC.................................................. 16S_KGP23_03X .......TT...................T.A.C...................................T.......CC.. 16S_Kgazi06XX .......TT...................TC.................................................. 16S_Kgazi18XX .......TT...................TC.................................................. 16S_Ssey14XXX .......TT...................TC.................................................. 16S_AGP05_13X TGTTAAAAAACCAT-ATTAATGGAAAGAACCAAATGACCCCTGTCCTTTTGTCTTTGGTTGGGGCGACCATGGAGTAACA 16S_AGP06_02X ...C...GG.....G..........GT.........G.TT......C................................. 16S_AGP06_07X ...C...GG.....G..........GT.........G.TT......C................................. 16S_AGP06_11X ...C...GG.....C..........GT.........G.TT......C................................. 16S_AGP07_01X ..............-................................................................. 16S_AGP08_13X ..............-................................................................. 16S_Alamu02in ...C...G......A...........A.........G.TT......CCC............................... 16S_Alamu07XX ...C...G......A...........A.........G.TT......CCC............................... 16S_Amida04XX ...C...G......A...........A.........G.TT......CCC............................... 16S_Amoza06XX ...C...G......A...........A.........G.TT......CCC............................... 16S_Amoza08XX ...C...G......A...........A.........G.TT......CCC............................... 16S_Apiai03XX ..............-................................................................. 16S_Asaba06XX ..............-................................................................. 16S_KGP19_03X .........C..CC-..C........T.........G.TT......CC--...................G.......... 16S_KGP19_04X .........C..CC-..C........T...T.....G.TT......CCC-...................G.......... 16S_KGP19_10X .........C..CC-..C........T.........G.TT......CC--...................G.......... 16S_KGP19_13X .........C..CC-..C........T...T.....G.TT......CCC-...................G.......... 16S_KGP20_04X ..............-...........A..................................................... 16S_KGP20_05X ..............-...........A..................................................... 16S_KGP21_09X ..............-...........A..................................................... 16S_KGP22_03X ..............-...........A..................................................... 16S_KGP23_01X ..............-...........A..................................................... 16S_KGP23_03X .........C..CC-..C........T.........G.TT......CCC-...................G.......... 16S_Kgazi06XX ..............-........G..A.........G........................................... 16S_Kgazi18XX ..............-........G..A.........G........................................... 16S_Ssey14XXX ..............-........G..A.........G..........C................................ 16S_AGP05_13X AAAAACCCCCATGTGGAACAGGGCCCAGGCCCTTAAAGCTAGAGCCACAGCTCTAACAAACAGAACATCTGACCTTCAAG 16S_AGP06_02X .........................T.AAT.........A...............G........................ 16S_AGP06_07X .........................T.AA..........A...............G........................ 16S_AGP06_11X .........................T.AA..........A...............G........................ 16S_AGP07_01X ................................................................................ 16S_AGP08_13X ................................................................................ 16S_Alamu02in .........................T.A........G..A..............CG........................ 16S_Alamu07XX .........................T.A........G..A..............CG........................ 16S_Amida04XX .........................T.A........G..A..............CG........................ 16S_Amoza06XX .........................T.A........G..A..............CG........................ 16S_Amoza08XX .........................T.A........G..A..............CG........................ 16S_Apiai03XX ................................................................................ 16S_Asaba06XX ................................................................................ 16S_KGP19_03X .G................T......A.A...........C........................................ 16S_KGP19_04X .G.......................A.A...........C........................................ 16S_KGP19_10X .G................T......A.A...........C........................................ 16S_KGP19_13X .G.......................A.A...........C........................................ 16S_KGP20_04X .........................T.A........GA.C.........................T.............. 16S_KGP20_05X .........................T.A........GA.C.........................T.............. 16S_KGP21_09X .........................T.A........GA.C.........................T.............. 16S_KGP22_03X .........................T.A........GA.C.........................T.............. 16S_KGP23_01X .........................T.A........GA.C.........................T.............. 16S_KGP23_03X .G.......................A.A...........C........................................ 16S_Kgazi06XX .........................T.A........GA.C.........................T.............. 16S_Kgazi18XX .........................T.A........GA.C.........................T.............. 16S_Ssey14XXX .........................T.A........GA.C.........................T.............. 16S_AGP05_13X ATCCGGCAAGACCGATCAACGGACCGAGTTACCCTAGGGATAACAGCGCAATCCCCTTTTAGAGCCCATATCGACAAGGG 16S_AGP06_02X ..........................................................C..................... 16S_AGP06_07X ..........................................................C..................... 16S_AGP06_11X ..........................................................C..................... 16S_AGP07_01X ................................................................................ 16S_AGP08_13X ................................................................................ 16S_Alamu02in ......T..A................................................C..................... 16S_Alamu07XX ......T..A................................................C..................... 16S_Amida04XX ......T..A................................................C..................... 16S_Amoza06XX ......T..A................................................C..................... 16S_Amoza08XX ......T..A................................................C..................... 16S_Apiai03XX ................................................................................ 16S_Asaba06XX ................................................................................ 16S_KGP19_03X .........AG...............................................C..................... 16S_KGP19_04X .........AG...............................................C..................... 16S_KGP19_10X .........AG...............................................C..................... 16S_KGP19_13X .........AG...............................................C..................... 16S_KGP20_04X ................................................................................ 16S_KGP20_05X ................................................................................ 16S_KGP21_09X ................................................................................ 16S_KGP22_03X ................................................................................ 16S_KGP23_01X ................................................................................ 16S_KGP23_03X .........AG...............................................C..................... 16S_Kgazi06XX ................................................................................ 16S_Kgazi18XX ................................................................................ 16S_Ssey14XXX ................................................................................ 16S_AGP05_13X GGTTTACGACCTCGATGTTGGATCAGGACACCCTAATGGTGCAGCCGCTATTAAGGGTTCGTTTGTTCAACGATTAAAGT 16S_AGP06_02X ................................................................................ 16S_AGP06_07X ................................................................................ 16S_AGP06_11X ................................................................................ 16S_AGP07_01X ................................................................................ 16S_AGP08_13X ................................................................................ 16S_Alamu02in ................................................................................ 16S_Alamu07XX ................................................................................ 16S_Amida04XX ................................................................................ 16S_Amoza06XX ................................................................................ 16S_Amoza08XX ................................................................................ 16S_Apiai03XX ................................................................................ 16S_Asaba06XX ................................................................................ 16S_KGP19_03X ................................................................................ 16S_KGP19_04X ................................................................................ 16S_KGP19_10X ................................................................................ 16S_KGP19_13X ................................................................................ 16S_KGP20_04X ................................................................................ 16S_KGP20_05X ................................................................................ 16S_KGP21_09X ................................................................................ 16S_KGP22_03X ................................................................................ 16S_KGP23_01X ................................................................................ 16S_KGP23_03X ................................................................................ 16S_Kgazi06XX ................................................................................ 16S_Kgazi18XX ................................................................................ 16S_Ssey14XXX ................................................................................ 16S_AGP05_13X CCTACGTGATCT 16S_AGP06_02X ............ 16S_AGP06_07X ............ 16S_AGP06_11X ............ 16S_AGP07_01X ............ 16S_AGP08_13X ............ 16S_Alamu02in ............ 16S_Alamu07XX ............ 16S_Amida04XX ............ 16S_Amoza06XX ............ 16S_Amoza08XX ............ 16S_Apiai03XX ............ 16S_Asaba06XX ............ 16S_KGP19_03X ............ 16S_KGP19_04X ............ 16S_KGP19_10X ............ 16S_KGP19_13X ............ 16S_KGP20_04X ............ 16S_KGP20_05X ............ 16S_KGP21_09X ............ 16S_KGP22_03X ............ 16S_KGP23_01X ............ 16S_KGP23_03X ............ 16S_Kgazi06XX ............ 16S_Kgazi18XX .....?...... 16S_Ssey14XXX ............ ; end;