#NEXUS [File generated by DnaSP Ver. 5.10.01, from file: Iex3S-correct-orientation-phased.fas Mar 10, 2016] BEGIN TAXA; DIMENSIONS NTAX=190; TAXLABELS 'AD14-1' 'AD14-2' 'AD16-1' 'AD16-2' 'AD19-1' 'AD19-2' 'AD20-1' 'AD20-2' 'AD22-1' 'AD22-2' 'AD23-1' 'AD23-2' 'AD26-1' 'AD26-2' 'AD29-1' 'AD29-2' 'AD3-1' 'AD3-2' 'AD8-1' 'AD8-2' 'AL13-1' 'AL13-2' 'AL14-1' 'AL14-2' 'AL22-1' 'AL22-2' 'AL23-1' 'AL23-2' 'AL25-1' 'AL25-2' 'AL29-1' 'AL29-2' 'AL3-1' 'AL3-2' 'AL35-1' 'AL35-2' 'AL45-1' 'AL45-2' 'AL46-1' 'AL46-2' 'AL56B-1' 'AL56B-2' 'AL9-1' 'AL9-2' 'BC20-1' 'BC20-2' 'BC60-1' 'BC60-2' 'BC90-1' 'BC90-2' 'BG1-1' 'BG1-2' 'BG4-1' 'BG4-2' 'CS109-1' 'CS109-2' 'CS12-1' 'CS12-2' 'CS13-1' 'CS13-2' 'CS21-1' 'CS21-2' 'CS22-1' 'CS22-2' 'CS27-1' 'CS27-2' 'CS89-1' 'CS89-2' 'DNF12-1' 'DNF12-2' 'DNF20-1' 'DNF20-2' 'DNF26-1' 'DNF26-2' 'DNF28-1' 'DNF28-2' 'DNF30-1' 'DNF30-2' 'DNF31-1' 'DNF31-2' 'DNF32-1' 'DNF32-2' 'DNF37-1' 'DNF37-2' 'DNF38-1' 'DNF38-2' 'DNF9-1' 'DNF9-2' 'FL851-1' 'FL851-2' 'FL860-1' 'FL860-2' 'FL867-1' 'FL867-2' 'FL872-1' 'FL872-2' 'FL875-1' 'FL875-2' 'FL883-1' 'FL883-2' 'LA20-1' 'LA20-2' 'LA35-1' 'LA35-2' 'LA43-1' 'LA43-2' 'LA48-1' 'LA48-2' 'LA58-1' 'LA58-2' 'LA60-1' 'LA60-2' 'LA62-1' 'LA62-2' 'LA80-1' 'LA80-2' 'LF12-1' 'LF12-2' 'LF16-1' 'LF16-2' 'LF18-1' 'LF18-2' 'LF20-1' 'LF20-2' 'LF21-1' 'LF21-2' 'LF22-1' 'LF22-2' 'LK16-1' 'LK16-2' 'MC14-1' 'MC14-2' 'MC151-1' 'MC151-2' 'MC42-1' 'MC42-2' 'MC85-1' 'MC85-2' 'SAH21-1' 'SAH21-2' 'SD102-1' 'SD102-2' 'SD103-1' 'SD103-2' 'SD114-1' 'SD114-2' 'SH93-1' 'SH93-2' 'SRS1031-1' 'SRS1031-2' 'SRS104-1' 'SRS104-2' 'SRS106-1' 'SRS106-2' 'SRS116-1' 'SRS116-2' 'SRS12-1' 'SRS12-2' 'SRS153-1' 'SRS153-2' 'SRS17-1' 'SRS17-2' 'SRS170-1' 'SRS170-2' 'SRS171-1' 'SRS171-2' 'SRS50-1' 'SRS50-2' 'SRS60-1' 'SRS60-2' 'SRS67-1' 'SRS67-2' 'SRS77-1' 'SRS77-2' 'ST2-1' 'ST2-2' 'TF128-1' 'TF128-2' 'TF130-1' 'TF130-2' 'TF131-1' 'TF131-2' 'TF133-1' 'TF133-2' 'TF134-1' 'TF134-2' 'TF136-1' 'TF136-2' 'WT37-1' 'WT37-2'; END; BEGIN CHARACTERS; DIMENSIONS NCHAR=184; FORMAT DATATYPE=DNA MISSING=? GAP=- MATCHCHAR=.; MATRIX 'AD14-1' TGAGCTCCGGGGTGACGGCTCCAAAGGGGGGTTTCGCCAGGATGCCTACGACGGACGAGACTTCATCAGC CTGGATAAGGACCACGAGGCCTGGGTGGCGGCAGATGACGCGGCTCGGATCACCAAACAGAAATGGGATG CTGACAGGAGCATCGCTCAGTTTTGGAAGGGCTACCTGGAGGAG 'AD14-2' ...................................................................... ...................................................................... ............................................ 'AD16-1' ...................................................................... ...................................................................... ............................................ 'AD16-2' ...................................................................... ...................................................................... ............................................ 'AD19-1' ...................................................................... ...................................................................... ............................................ 'AD19-2' ...................................................................... ...................................................................... ............................................ 'AD20-1' ...................................................................... ...................................................................... ............................................ 'AD20-2' ...................................................................... ...................................................................... ............................................ 'AD22-1' ...................................................................... ...................................................................... ............................................ 'AD22-2' ...................................................................... ...................................................................... ............................................ 'AD23-1' ...................................................................... ...................................................................... ............................................ 'AD23-2' ...................................................................... ...................................................................... ............................................ 'AD26-1' ...................................................................... ...................................................................... ............................................ 'AD26-2' ...................................................................... ...................................................................... ............................................ 'AD29-1' ...................................................................... ...................................................................... .A.......................................... 'AD29-2' ...................................................................... ...................................................................... .A.......................................... 'AD3-1' ...................................................................... ...................................................................... ............................................ 'AD3-2' ...................................................................... ...................................................................... ............................................ 'AD8-1' ...................................................................... ...................................................................... ............................................ 'AD8-2' ...................................................................... ...................................................................... ............................................ 'AL13-1' ...................................................................... ...................................................................... ............................................ 'AL13-2' ...................................................................... ...................................................................... ............................................ 'AL14-1' ...................................................................... ...................................................................... ............................................ 'AL14-2' ...................................................................... ...................................................................... ............................................ 'AL22-1' ...................................................................... ...................................................................... ............................................ 'AL22-2' ...................................................................... ...................................................................... ............................................ 'AL23-1' ...................................................................... ...................................................................... ............................................ 'AL23-2' ...................................................................... ...................................................................... ............................................ 'AL25-1' ...................................................................... ...................................................................... ............................................ 'AL25-2' ...................................................................... ...................................................................... ............................................ 'AL29-1' ...................................................................... ...................................................................... ............................................ 'AL29-2' ...................................................................... ...................................................................... ............................................ 'AL3-1' ...................................................................... ...................................................................... ............................................ 'AL3-2' ...................................................................... ...................................................................... ............................................ 'AL35-1' ...................................................................... ...................................................................... ............................................ 'AL35-2' ...................................................................... ...................................................................... ............................................ 'AL45-1' ...................................................................... ...................................................................... ............................................ 'AL45-2' ...................................................................... ...................................................................... ............................................ 'AL46-1' ...................................................................... ...................................................................... ............................................ 'AL46-2' ...................................................................... ...................................................................... ............................................ 'AL56B-1' ...................................................................... ...................................................................... ............................................ 'AL56B-2' ...................................................................... ...................................................................... ............................................ 'AL9-1' ..................................TA...............T..G.........G..... ..................A..................T..G.....A.G.........G........... ....................CAG..................... 'AL9-2' ..................................TA...............T..G.........G..... ..................A..................T..G.....A.G.........G........... ....................CAG..................... 'BC20-1' ...................................................................... ...................................................................... ............................................ 'BC20-2' ...................................................................... ...................................................................... ............................................ 'BC60-1' ...................................................................... ...................................................................... ............................................ 'BC60-2' ...................................................................... ...................................................................... ............................................ 'BC90-1' ...................................................................... ...................................................................... ............................................ 'BC90-2' ...................................................................... ...................................................................... ............................................ 'BG1-1' ..................................TA...............T..G.........G..... ..................A..................T..G.....A.G.........G.........G. ....................CAG..................... 'BG1-2' ..................................TA...............T..G.........G..... ..................A..................T..G.....A.G.........G.........G. ....................CAG..................... 'BG4-1' ...................................................................... ...................................................................... ............................................ 'BG4-2' ...................................................................... ...................................................................... ............................................ 'CS109-1' ...................................................................... ...................................................................... ............................................ 'CS109-2' ...................................................................... ...................................................................... ............................................ 'CS12-1' ...................................................................... ...................................................................... ............................................ 'CS12-2' ...................................................................... ...................................................................... ............................................ 'CS13-1' ...................................................................... ...................................................................... ............................................ 'CS13-2' ...................................................................... ...................................................................... ............................................ 'CS21-1' ...................................................................... ...................................................................... ............................................ 'CS21-2' ...................................................................... ...................................................................... ............................................ 'CS22-1' ...................................................................... ...................................................................... ............................................ 'CS22-2' ...................................................................... ...................................................................... ............................................ 'CS27-1' ...................................................................... ...................................................................... ............................................ 'CS27-2' ...................................................................... ...................................................................... ............................................ 'CS89-1' ...................................................................... ...................................................................... ............................................ 'CS89-2' ...................................................................... ...................................................................... ............................................ 'DNF12-1' ...................................................................... ...................................................................... ............................................ 'DNF12-2' ...................................................................... ...................................................................... ............................................ 'DNF20-1' ...................................................................... ...................................................................... ............................................ 'DNF20-2' ...................................................................... ...................................................................... ............................................ 'DNF26-1' ...................................................................... ...................................................................... ............................................ 'DNF26-2' ...................................................................... ...................................................................... ............................................ 'DNF28-1' ...................................................................... ...................................................................... ............................................ 'DNF28-2' ...................................................................... ...................................................................... ............................................ 'DNF30-1' ...................................................................... ...................................................................... ............................................ 'DNF30-2' ...................................................................... ...................................................................... ............................................ 'DNF31-1' ...................................................................... ...................................................................... ............................................ 'DNF31-2' ...................................................................... ...................................................................... ............................................ 'DNF32-1' ...................................................................... ...................................................................... ............................................ 'DNF32-2' ...................................................................... ...................................................................... ............................................ 'DNF37-1' ...................................................................... ...................................................................... ............................................ 'DNF37-2' ...................................................................... ...................................................................... ............................................ 'DNF38-1' ...................................................................... ...................................................................... ............................................ 'DNF38-2' ...................................................................... ...................................................................... ............................................ 'DNF9-1' ...................................................................... ...................................................................... ............................................ 'DNF9-2' ...................................................................... ...................................................................... ............................................ 'FL851-1' ..................................TA...............T..G........TG..... ..................A................................................... ....................GGACT...A.CT............ 'FL851-2' ..................................TA...............T..G........TG..... ..................A................................................... ....................GGACT...A.CT............ 'FL860-1' ..................................TA...............T..G........TG..... ..................A................................................... ....................GGACT...A.CT............ 'FL860-2' ..................................TA...............T..G........TG..... ..................A................................................... ....................GGACT...A.CT............ 'FL867-1' ..................................TA...............T..G........TG..... ..................A................................................... ....................GGACT...A.CT............ 'FL867-2' ..................................TA...............T..G........TG..... ..................A................................................... ....................GGACT...A.CT............ 'FL872-1' ..................................TA...............T..G........TG..... ..................A................................................... ....................GGACT...A.CT............ 'FL872-2' ..................................TA...............T..G........TG..... ..................A................................................... ....................GGACT...A.CT............ 'FL875-1' ....A........T....................TA...............T..G.........G..... ..................A..................T..G.....A.G.........G........... ....................CAG..................... 'FL875-2' ....A........T....................TA...............T..G.........G..... ..................A..................T..G.....A.G.........G........... ....................CAG..................... 'FL883-1' ..................................TA...............T..G........TG..... ..................A................................................... ....................GGACT...A.CT............ 'FL883-2' ..................................TA...............T..G........TG..... ..................A................................................... ....................GGACT...A.CT............ 'LA20-1' ...................................................................... ...................................................................... ............................................ 'LA20-2' ...................................................................... ...................................................................... ............................................ 'LA35-1' ...................................................................... ...................................................................... ............................................ 'LA35-2' ...................................................................... ...................................................................... ............................................ 'LA43-1' ...................................................................... ...................................................................... ............................................ 'LA43-2' ...................................................................... ...................................................................... ............................................ 'LA48-1' ...................................................................... ...................................................................... ............................................ 'LA48-2' ...................................................................... ...................................................................... ............................................ 'LA58-1' ...................................................................... ...................................................................... ............................................ 'LA58-2' ...................................................................... ...................................................................... ............................................ 'LA60-1' ...................................................................... ...................................................................... ............................................ 'LA60-2' ...................................................................... ...................................................................... ............................................ 'LA62-1' ...................................................................... ...................................................................... ............................................ 'LA62-2' ...................................................................... ...................................................................... ............................................ 'LA80-1' ...................................................................... ...................................................................... ............................................ 'LA80-2' ...................................................................... ...................................................................... ............................................ 'LF12-1' ...................................................................... ...................................................................... ............................................ 'LF12-2' ...................................................................... ...................................................................... ............................................ 'LF16-1' ...................................................................... ...................................................................... ............................................ 'LF16-2' ...................................................................... ...................................................................... ............................................ 'LF18-1' ...................................................................... ...................................................................... ............................................ 'LF18-2' ...................................................................... ...................................................................... ............................................ 'LF20-1' ...................................................................... ...................................................................... ............................................ 'LF20-2' ...................................................................... ...................................................................... ............................................ 'LF21-1' ...................................................................... ...................................................................... ............................................ 'LF21-2' ...................................................................... ...................................................................... ............................................ 'LF22-1' ...................................................................... ...................................................................... ............................................ 'LF22-2' ...................................................................... ...................................................................... ............................................ 'LK16-1' ...................................................................... ...................................................................... ............................................ 'LK16-2' ...................................................................... ...................................................................... ............................................ 'MC14-1' ...................................................................... ...................................................................... ............................................ 'MC14-2' ...................................................................... ...................................................................... ............................................ 'MC151-1' ...................................................................... ...................................................................... ............................................ 'MC151-2' ...................................................................... ...................................................................... ............................................ 'MC42-1' ...................................................................... ...................................................................... ............................................ 'MC42-2' ...................................................................... ...................................................................... ............................................ 'MC85-1' ...................................................................... ...................................................................... ............................................ 'MC85-2' ...................................................................... ...................................................................... ............................................ 'SAH21-1' ...................................................................... ...................................................................... ............................................ 'SAH21-2' ...................................................................... ...................................................................... ............................................ 'SD102-1' ...................................................................... ...................................................................... ............................................ 'SD102-2' ...................................................................... ...................................................................... ............................................ 'SD103-1' ...................................................................... ...................................................................... ............................................ 'SD103-2' ...................................................................... ...................................................................... ............................................ 'SD114-1' ...................................................................... ...................................................................... ............................................ 'SD114-2' ...................................................................... ...................................................................... ............................................ 'SH93-1' ...................................................................... ...................................................................... ............................................ 'SH93-2' ...................................................................... ...................................................................... ............................................ 'SRS1031-1' ..................................TA...............T..G........TG..... ..................A................................................... ....................GGACT...A.CT............ 'SRS1031-2' ..................................TA...............T..G........TG..... ..................A................................................... ....................GGACT...A.CT............ 'SRS104-1' ..................................TA...............T..G........TG..... ..................A................................................... ....................GGACT...A.CT............ 'SRS104-2' ..................................TA...............T..G........TG..... ..................A................................................... ....................GGACT...A.CT............ 'SRS106-1' ..................................TA...............T..G........TG..... ..................A................................................... ....................GGACT...A.CT............ 'SRS106-2' ..................................TA...............T..G........TG..... ..................A................................................... ....................GGACT...A.CT............ 'SRS116-1' ..................................TA...............T..G........TG..... ..................A................................................... ....................GGACT...A.CT............ 'SRS116-2' ..................................TA...............T..G........TG..... ..................A................................................... ....................GGACT...A.CT............ 'SRS12-1' ..................................TA...............T..G........TG..... ..................A................................................... ....................GGACT...A.CT............ 'SRS12-2' ..................................TA...............T..G........TG..... ..................A................................................... ....................GGACT...A.CT............ 'SRS153-1' ..................................TA...............T..G........TG..... ..................A................................................... ....................GGACT...A.CT............ 'SRS153-2' ..................................TA...............T..G........TG..... ..................A................................................... ....................GGACT...A.CT............ 'SRS17-1' ..................................TA...............T..G........TG..... ..................A................................................... ....................GGACT...A.CT............ 'SRS17-2' ..................................TA...............T..G........TG..... ..................A................................................... ....................GGACT...A.CT............ 'SRS170-1' ..................................TA...............T..G........TG..... ..................A................................................... ....................GGACT...A.CT............ 'SRS170-2' ..................................TA...............T..G........TG..... ..................A................................................... ....................GGACT...A.CT............ 'SRS171-1' ..................................TA...............T..G........TG..... ..................A................................................... ....................GGACT...A.CT............ 'SRS171-2' ..................................TA...............T..G........TG..... ..................A................................................... ....................GGACT...A.CT............ 'SRS50-1' ..................................TA...............T..G........TG..... ..................A................................................... ....................GGACT...A.CT............ 'SRS50-2' ..................................TA...............T..G........TG..... ..................A................................................... ....................GGACT...A.CT............ 'SRS60-1' ..................................TA...............T..G........TG..... ..................A................................................... ....................GGACT...A.CT............ 'SRS60-2' ..................................TA...............T..G........TG..... ..................A................................................... ....................GGACT...A.CT............ 'SRS67-1' ..................................TA...............T..G.........G..... ..................A..................T..G.....A.G.........G........... ....................CAG..................... 'SRS67-2' ..................................TA...............T..G.........G..... ..................A..................T..G.....A.G.........G........... ....................CAG..................... 'SRS77-1' ..................................TA...............T..G........TG..... ..................A................................................... ....................GGACT...A.CT............ 'SRS77-2' ..................................TA...............T..G........TG..... ..................A................................................... ....................GGACT...A.CT............ 'ST2-1' ...................................................................... ...................................................................... ............................................ 'ST2-2' ...................................................................... ...................................................................... ............................................ 'TF128-1' ...................................................................... ...................................................................... ............................................ 'TF128-2' ...................................................................... ...................................................................... ............................................ 'TF130-1' ...................................................................... ...................................................................... ............................................ 'TF130-2' ...................................................................... ...................................................................... ............................................ 'TF131-1' ...................................................................... ...................................................................... ............................................ 'TF131-2' ...................................................................... ...................................................................... ............................................ 'TF133-1' ...................................................................... ...................................................................... ............................................ 'TF133-2' ...................................................................... ...................................................................... ............................................ 'TF134-1' ...................................................................... ...................................................................... ............................................ 'TF134-2' ...................................................................... ...................................................................... ............................................ 'TF136-1' ...................................................................... ...................................................................... ............................................ 'TF136-2' ...................................................................... ...................................................................... ............................................ 'WT37-1' ..................................TA...............T..G.........G..... ..................A..................T..G.....A.G.........G........... ....................CAG..................... 'WT37-2' ..................................TA...............T..G.........G..... ..................A..................T..G.....A.G.........G........... ....................CAG..................... ; END; BEGIN SETS; TaxSet DNF2 = 1-20; TaxSet AL = 21-44; TaxSet BC = 45-50; TaxSet BG = 51-54; TaxSet CS = 55-68; TaxSet DNF3 = 69-88; TaxSet FL = 89-100; TaxSet FGP = 101-116; TaxSet DNF1 = 117-128; TaxSet LK = 129-130; TaxSet MC = 131-138; TaxSet SAH = 139-140; TaxSet SD = 141-146; TaxSet SH = 147-148; TaxSet SRS = 149-174; TaxSet ST = 175-176; TaxSet TF = 177-188; TaxSet WT = 189-190; END; BEGIN CODONS; CODESET * UNTITLED = Universal: all; END; BEGIN CODONUSAGE; END; BEGIN DnaSP; Genome= Diploid; ChromosomalLocation= Autosome; VariationType= DNA_Seq_Pol; Species= ---; ChromosomeName= ---; GenomicPosition= 1; GenomicAssembly= ---; DnaSPversion= Ver. 5.10.01; END;