Settings used alignment : ./April.v5.phy branchlengths : linked models : GTR+I+G, GTR+G model_selection : bic search : greedy Best partitioning scheme Scheme Name : step_21 Scheme lnL : -37619.19893 Scheme BIC : 76475.9184237 Number of params : 134 Number of sites : 10252 Number of subsets : 9 Subset | Best Model | Subset Partitions | Subset Sites | Alignment 1 | GTR+G | AK_pos1, PEPK_pos1, Rho_pos1 | 1-599\3, 5543-6250\3, 6251-7218\3 | ./analysis/phylofiles/9f69f7fe4927bdda45b164260c10b232.phy 2 | GTR+I+G | AK_pos2, CAD_pos2, EF1a1_pos3, EF1a2_pos2, NAK_pos3, PEPK_pos2, PolII_pos2 | 2-599\3, 601-2320\3, 2323-2903\3, 2905-4053\3, 4056-5542\3, 5544-6250\3, 7219-8108\3 | ./analysis/phylofiles/b089eedb735a4c2124cc6e826e270d72.phy 3 | GTR+G | AK_pos3, EF1a2_pos3, PEPK_pos3, PolII_pos3 | 3-599\3, 2906-4053\3, 5545-6250\3, 7220-8108\3 | ./analysis/phylofiles/6b2036a3abc3f1d16d13a24ebf90f64f.phy 4 | GTR+I+G | CAD_pos1, EF1a1_pos2, EF1a2_pos1, NAK_pos2, PolII_pos1, Wg_pos1, Wg_pos2 | 600-2320\3, 2322-2903\3, 2904-4053\3, 4055-5542\3, 7221-8108\3, 8110-8775\3, 8111-8775\3 | ./analysis/phylofiles/ff230712803adb37f84b94ca133bdb40.phy 5 | GTR+G | CAD_pos3, Rho_pos3 | 602-2320\3, 6253-7218\3 | ./analysis/phylofiles/912353da8a4a691c77fb40b8cd902197.phy 6 | GTR+G | EF1a1_pos1, NAK_pos1, Wg_pos3 | 2321-2903\3, 4054-5542\3, 8109-8775\3 | ./analysis/phylofiles/c33baf7936923245c7b971ecb678a41f.phy 7 | GTR+G | COI_pos2, Rho_pos2 | 6252-7218\3, 8778-10252\3 | ./analysis/phylofiles/3cc0bc5782d7e5f634a3153aad760145.phy 8 | GTR+I+G | COI_pos3 | 8776-10252\3 | ./analysis/phylofiles/38bacc1eefd8c036b47243feb41a4418.phy 9 | GTR+I+G | COI_pos1 | 8777-10252\3 | ./analysis/phylofiles/46856d6eb7ec05340971a9122044ce3a.phy Scheme Description in PartitionFinder format Scheme_step_21 = (AK_pos1, PEPK_pos1, Rho_pos1) (AK_pos2, CAD_pos2, EF1a1_pos3, EF1a2_pos2, NAK_pos3, PEPK_pos2, PolII_pos2) (AK_pos3, EF1a2_pos3, PEPK_pos3, PolII_pos3) (CAD_pos1, EF1a1_pos2, EF1a2_pos1, NAK_pos2, PolII_pos1, Wg_pos1, Wg_pos2) (CAD_pos3, Rho_pos3) (EF1a1_pos1, NAK_pos1, Wg_pos3) (COI_pos2, Rho_pos2) (COI_pos3) (COI_pos1); RaxML-style partition definitions DNA, p1 = 1-599\3, 5543-6250\3, 6251-7218\3 DNA, p2 = 2-599\3, 601-2320\3, 2323-2903\3, 2905-4053\3, 4056-5542\3, 5544-6250\3, 7219-8108\3 DNA, p3 = 3-599\3, 2906-4053\3, 5545-6250\3, 7220-8108\3 DNA, p4 = 600-2320\3, 2322-2903\3, 2904-4053\3, 4055-5542\3, 7221-8108\3, 8110-8775\3, 8111-8775\3 DNA, p5 = 602-2320\3, 6253-7218\3 DNA, p6 = 2321-2903\3, 4054-5542\3, 8109-8775\3 DNA, p7 = 6252-7218\3, 8778-10252\3 DNA, p8 = 8776-10252\3 DNA, p9 = 8777-10252\3