Data from: Exploring the role of asexual multiplication in poplar rust epidemics: impact on diversity and genetic structure Authors: Benoît Barrès; Cyril Dutech; Axelle Andrieux; Fabien Halkett; Pascal Frey Data File: DATA-EHE-2012.csv Details for column names: -ID: Individual identifier -country: country where the samples were taken from -location: sampling site -host_plant: Host species (Hybrid poplars or Populus nigra) -collectors: name of the collectors -collection_date: coded as yyyymm -Longitude: geographical coordinates of sampling sites, projection system WGS84 -Latitude: geographical coordinates of sampling sites, projection system WGS84 -pop_ID: unique population identifier (combination between location and collection date information). "AC" stand for Charrey-A, "AD" for Amance, "AN" for Prelles-A, "AX" for Charrey-B and "CB" for Prelles-B -eff_loc: number of individuals in the corresponding population -nb_tr: number of trees sampled in the corresponding population -tree_ID: unique tree identifier -eff_tr: number of individuals sampled in the corresponding tree -nb_tw: number of twigs sampled in the corresponding tree -twig_ID: unique twig identifier -eff_tw: number of individuals sampled in the corresponding twig -nb_lv: number of leaves sampled in the corresponding twig -leave_ID: unique leave identifier -eff_lv: number of individuals sampled in the corresponding leave -ind_ID: a simplified individual identifier -geno_ID: Genotype identifier based on the multilocus profile (see publication for details) -[MLP09 to MLP38]: allele scores at 9 microsatellite loci (see publication and Barrès et al 2008 for details). Genetic profile consists in 18 alleles (diploid individuals) coded in 3 digits (fragment size in bp). Data File for R analysis: EHEdata.txt This is basically the same dataset as DATA-EHE-2012.csv, except that the format of the file is a bit different and ready to importation in R (see EHE.R file), and except that some useless columns for this analysis were removed Details for column names: #no column header for the Individual identifier -pop_ID: unique population identifier (combination between location and collection date information). "AC" stand for Charrey-A, "AD" for Amance, "AN" for Prelles-A, "AX" for Charrey-B and "CB" for Prelles-B -eff_loc: number of individuals in the corresponding population -nb_tr: number of trees sampled in the corresponding population -tree_ID: unique tree identifier -eff_tr: number of individuals sampled in the corresponding tree -nb_tw: number of twigs sampled in the corresponding tree -twig_ID: unique twig identifier -eff_tw: number of individuals sampled in the corresponding twig -nb_lv: number of leaves sampled in the corresponding twig -leave_ID: unique leave identifier -eff_lv: number of individuals sampled in the corresponding leave -ind_ID: a simplified individual identifier -geno_ID: Genotype identifier based on the multilocus profile (see publication for details) -[MLP09 to MLP38]: allele scores at 9 microsatellite loci (see publication and Barrès et al 2008 for details). Individuals are diploid and are coded in 6 digits (ie 2 * 3 digits representing the 2 allele sizes in bp). R code file: EHE.R This is the code used to computed the different diversity indices (see publication for details). The input data is the "EHEdata.txt" file.