Data files for: Halanych, K.M. and Kocot, K.M. 2014. Data from: Repurposed Transcriptomic Data Facilitate Discovery of Innate Immunity Toll-Like Receptor (TLR) Genes Across Lophotrochozoa. The Biological Bulletin 227. Trinity assemblies for each transcriptome: Barentsia_gracilis.fa Glottidia_pyramidata.fa Hemithiris_psittacea.fa Laqueus_californicus.fa Leptochiton_rugatus.fa Loxosoma_pectinaricola.fa Macandrevia_cranium.fa Magelona_beckleyi.fa Malacobdella_grossa.fa Novocrania_anomala.fa Paramphinome_jeffreysii.fa Paranemertes_peregrina.fa Parborlasia_corrugatus.fa Phoronis_psammophila.fa Phoronis_vancouverensis.fa Phyllochaetopterus_prolifica.fa Priapulus_sp.fa Proneomenia_custodiens.fa Nucleotide sequences for TLR and LRR genes discussed in the manuscript: TLR_sequences_DNA.fas Amino acid sequences for TLR and LRR genes discussed in the manuscript: TLR_sequences_AA.fas NOTE: In a few cases, the same nucleotide contig returned two different translations in TransDecoder that yielded different BLASTP results. In such cases both animo acid sequences were listed. These include: Laqueus californus seqeunces 1 & 3 Leptochiton rugatus sequences 2 & 3 Paramphinome jeffreysii sequences 2 & 3 Phoronis vancouverensis seqeunces 3 & 4 As noted in the paper in on case, Paranemertes peregrina sequences 2 & 4 turned out to be identical.