#NEXUS [Triticeae, 5S sequences, chars=570, long locus, with polymorphisms; 10/92] begin data; dimensions ntax=12 nchar=1177; format datatype=dna interleave missing=- equate="1={A-} 2={C-} 3={G-} 4={T-}"; matrix Aeg_spelt -TTTTTAA-TTAKTTTTT-GCGCCWYG-TGACAAMCATATCGCACRTGYGYGA-----TATAWATK-AATCCCGTTATAKTATTT-TTGASGTTTGCGAYATG-TT Aeg_tau -TTTTTAA-TTAKTTTTTG2CGCCTCG-TGACAAACATATCGCATGTGCGCGA-----TATATATT-AACCCCGTYATATTATTT-TTGAYATTTGCGATATG-TT Agro_cris TTTTTWAAW--TTTTTTTG-CGACTCR-WGAYAGASATGWCGCACGTGCGCGA-----TATATATT-AACMY-GTTATTTTATTT-TTDACGTTYGCGATAYG-TT Aust_ret 4TTTTTAA-TTATTTTT-G-CGCRCWY3TGACAAACARARCGYACGTGCSSGH-----TGTRYATT-AACATTGTTWTC4TTTTTTTTGACGYRYGCSATATGYTY Crites[_brev] TTTTTTAA-TATATTTTTG-CTCCACGC-GAGAAACATGACGCGCGTGCGCG------TATTTATT-AAACAATGCATCTTATTT-TTGACGTTTGCGGTAAG-TT Das_vil -TTTTTAA14TTTTTTTTG-CGCGTCGY-GASAAAGATAACGCACGTGCKCGA-----TATATATT-AAACRCGTTTTCATAGTT-TTGACGTTGTGGATSTG-AT Hord_bulb TTTTTGAA-TATATTTTTG-CGCCACG-TGGCAGCGA1ATGACGCACGTGAGTC4134TATATAT-GAAGCCCATTTYATTATTT-TTGACRTTTTGTGAAGTGTT Pse_spic TTTTTTAATTTTTTTTTTG-CGACTCA-TGACAAACAAAACGCACGTGCGCGA-----TATATATT-AACCCTGTTATATTATTT-TTGACGTTTGCGATATG-TT Sec_cer -TTTTTAAWTTTTTTTT4G-CGTGTCG-TGAGAAACRAAATGCACGTGCGTGA-----TATATATT-AACCT2GTTATATYATTTATTGACGTTTGCGATAT--TT Sec_mon -TTTTTAA-TTTTTTTT4G-CGTGTCG-TGAGAAACAAAATGTACGTGCGTGA-----TATATATT3AACCYCGTTATATTATTTATTGACGTTTGCGATAT--TT Thino_elon -TTTTTAA-TTATTTTTTG-CGCCTCG-TGACAAACATGTCGCACGTGCGTGA-----TATATATT-AACCCCGCTGTATTCTTT-TTGACATTTCCTATATG-TT Trit_mon -TTTTTAA-TTATTTTTTG-TACGTACATGAGGAACAGAACGCACGTGCGTGA-----TATATATT-AAGCCTGTCATCATATTT-TTAACATTTGCGATATGTTT Aeg_spelt TAAGCTCGMTGYTCA-TTGCTCGCGC-GTCTTGGGGCR-GCWTTG---TGGCGC-G-AAG----AGCGCG-TT-C2TGAAA-GGGGTGGMAAAAMYW-------------CG-TGTYGS--T Aeg_tau TTAGCTCGYTGCTCA-TTGGTCAMGC-GTCTAGAGGYG-GCTTTG---TGGCGY4G-ASG----A3CGCS-TY-C-TGWAA-GGGRT-AAAAAA1TA-------------CG1TGTTGC21T Agro_cris TAAGCTCGCTGCTGA-ATACTCAYSC-34STAGGGGCG2GCGTCG---TGGCGC-GAAA-----AGCGCG-CT-C-TCARA--TGGTGGAAAA--TA-------------2G-CGTTGC--C Aust_ret -TAGCTCGCTGCTCR-TTACTCACGC-GTCWAGRGGCG-GCG443---4GGCGC-GRAAA-----32GYK-TY-B-YS1AAGSGC-TG-AAAAAATA-------------CG-TGTYGC--Y Crites[_brev] ATAGCTTGCGGCGCA-CTACTMACGC-GTCTAGGGGCG-GCRTTGCGGTGGCA------WTGGTACCGCG-TT-G-TGAAA-GGGGTCGAAA-----CCGCGGTAGAACTCG-TGTTGG--T Das_vil WTAGGTCGCTGGTCA-TTAYTCACGC-GTGMTGGGGCG-GCGTTG---TGKCGC-AAAA-----AGCGCG-TT-C--KAAAT-GGGTTGGAAAA-CA-------------CG-TGTTGC--T Hord_bulb TTAGCTCACGGCTCA-TTGTTCAGGC-GTATATGTGCG-GCAAGGGCGTT-CG--GAAAGTGGT-----------------CGGGGACGTGTTA-----GCG------CTCG-TGTT3G--T Pse_spic TAAGCTCGCTGCTCA-TTACTCACGCACTCTAGGGGCG-GCGTTG---TGGCGC-GAAA-----AGCG---TT-C-TCAAA--GGGTGGAAAA--TA-------------CG-TGTTGC--C Sec_cer TTAGCTCGCTGMTCA-TAACTCACGC-GTGTAGGGGCG-GCGTTG---TGACGC-G-AAA----AGCGCG-TT-C-TGAGAAGGGA-GG--AAAATA-------------CG-TGYTGC--T Sec_mon TTAGCTCGCTGCTCA3TAACTCACGC-GTGTAGGG23S-GCGTTG---TGACGC-G-AAA----AGCGCG-TT-C-TGAGAAGGGA-GG--AAAAWA-------------CG-YGTTGC--T Thino_elon TTAGCTCGCTGCTCA-TTGCTCACGC-GTCTAGGGGCG-GCCTTG---TGGCGC-G-AAG----AGCGC-ATTGC-TGAAAGGGG-TG-AAAAAATA-------------CG-TCTTGC--T Trit_mon TTAGCTCGGAGCTCA-TTAGTCACGC-GTCTAGGGAGA-G--TTG---GGGCGC-G-AAA----AGCG---TT-C-TGAAAGGGG-TGT--AAAATA-------------CGGTGTTGC--T Aeg_spelt -GYGGTAY-GG1GGGA-GG-GGTGGARACYGTGGWAAACTCGTCT-YCGTGATTGA--G2CGGGAGAKTAAGTAG----TATAGGACA-TYATCC--ATTGTTA-GGGAACGGTTG Aeg_tau -GYGGTATAG-AGGGAR-G-GGTGGAAACCGTGGTAAACTCGTCT-YCGTGTTTGA3GG3GGGGGGAGTAAGTAGTATATATAGGGCA-TTATCC--ATTATTA-GGCWRMGGTTG Agro_cris -GCGGTATAG-WGGGA33GGGGTGRAACCMRTGGTAAACTCGTCT-CCGTAGTTRA--G-YRGGRKCGTAAGTAG----TRYAKGRCA-TCATCC--ATCRT-AAGGGAACRGTCG Aust_ret -GCRGYATWG-AGSGA-GG-KGTGGCAACCGTGGTAAACTCGTCT-TCGTAGCCGA--R-TGGGAKAGTAAGTAG----TAYAGGGMA-TTATCC--RTTATTA-GGCAACGGTTG Crites[_brev] -GCGGTAGAG-AGGGAA--SGGTGGAAACGSTKGAAAACCCGTCT-TTGTTGTTGA--G-CGGGAGAATACGTGG----TACGGYGCGG-TATCC--GTTATTA-GGAG-CGGTGG Das_vil -GCGGCAGAG-AGGGA-GG-GGTGGAAACCGTGGTAAACTCGTCT-CCGYAGTTGA--G-C3GGAGAGTAAGTAG--------GMGK------------------GGCAACGGTTG Hord_bulb CGAGGTAGAG--GGGT3-GS-GCGAAATCYGTGGTAACCTCGTGT-CCGTTGTTGA--G-CGGGAGGGTGAGTA3----TGTGGTGCGG-TATCC--ATTACTAGGCGAATGGTGG Pse_spic -GCGGTATAG-AGGGA--G-GGTGGAAACCGTGGTAAAGTCGTCT-CCGTAGTTGA--G-CGGGAGAGTAAGTAG----CATAGGACACTTATCC--ATTGTTA-GGCCAAGGTTG Sec_cer -GCGGTATAG3AGGGA-GG-GGTGGAAACCGTGGTAAACTCGTCT-CCGTAGCTGR--G-MGGGAGAGTGAGTAG----TATAGGGCA-TTAGCC--ATTATTA-GGCAACGGTCG Sec_mon -GC3GTATAG-AGGGA-GG-GGTGGAAACCGTGRTAAACTCGTCT-CCGTAGYTGA--G-CGGGAGRGTGAGTAG----TATAGGGCA-TTAGCC--ATTATTA-GGCAACGGTCG Thino_elon -GCTGTATAG-AGGGA-GG-GGTAGAAACCGTGGTAAACTCGTCC-CCGTGTTTGA--G-CGGGACATTAAGTAG----TATAG-CGA-TTATCC--ATTATTA-GGCAACGGTTG Trit_mon -GCGGTATAG-AGGGA-GG-GGTGGAAATCATGGTAAACTCGTCT-TCGTAGTTGA--G-CGAGAGAGTAAGTAG----TATAGGGCA-TTATCC--ATTAGTA-GGCGACGGT-G Aeg_spelt TAA-TGGTAGTGA----GAA-TGTAGAA-TCGTCTDTGGAGCGGA-CCTGGGA-GTGGCAAGCA-TAAGGGA-CG--AAGAC-GGGSMARCA-TGTCGGA-TGC-GAYCAT-A Aeg_tau TAA-TGGTAGTAA----GAA-TK-ACAA-TCATCTTTGYAGTGGA3CCT3GGA-GTGGCAAGCA-TAAGGGA3CG--AAGGCGGGSGTAACA-TGTCGGA3TGC1GATCAT-A Agro_cris TAA-TGSTAGTAA----GAA-TGTGCAA-TCGTSWTTGTTGTGGA-CCTGSGA-GYGGAAAGCA-TAWSGGA-CG--AAGACGGGGGTA12A-TGTCGGA-TGC-GRTCAT-A Aust_ret TAA-TGATWGTAG----GRA-TGCACAAT-CGCCTTTCTCATGGA-CCWKGGA-GCGGCAAGCA4TAAGGGG-CG--AAGGCGGGGGTAACA-TGTCGGA-TGC-GATCAT1W Crites[_brev] -------------AAAAGAA-YRTACGG-AGGTGTTTATGGTGGAGC-TGAGA-GGGGCTAGAA-TAAGGGA-CG--AAGGCGGRAGTAACA-TGTCGGA-TGC-GATCAT-A Das_vil TAA-TGGTMGTARGAAAGAA-TGTRCAA-ACGTCTTTGTAATGGA-CCTGGGA-GGGGCAAGCA-TAAGGGA-CG--RAGGCGGGAGTAACA-TGTCGGA-TGC-GATCAT-A Hord_bulb TGA--------------GAA-TGCACGGCCCGTCTTTTTAGTGAA-CGTGGGA-GGGACT-GCA-TAAGGAAAC---AAATAGTTATGAASA-TGTCGGA-TGC-GATCAT-A Pse_spic TCA-TGGTAGTAA----GAA-TGTACAA-TCGTCATTGTTGTGG--CCTAGGAAGTGGCAAG-AATAAGGAA-CG--AAG-GGGGGGTAACA-TGTCGGA-TGC-GATCAT-A Sec_cer TGAA-GGTGGCAA----GAG-TGTAATAC-CGTCTTCGTACTGGA-CCTGGGA-GTGGCAAGCA-TAAGGSA-CG-1AAGGCAGGGGTAACA-TGTCGGA-TGC-GATCAT-A Sec_mon TGAA-GGTRGYAA----GAG-TGTAATAC-SGTCTTCGTACTGGA-CCTGGGA-GTGGCAAGCA-TAAGGGA-CG--AAGGCAGGGGTAACA-TGTCRGA-TGC-GATCAT-A Thino_elon TAA-TGGTAGTAA----GAA-TGTACAAT-CGTCTTTGTAGTGGA-CCTGGGA-GTGGCAAGCA-TAAGGGA-CG--AAGGCGGGGGTAACAC-GCCGGA-TGC-GATCAT-A Trit_mon TAA-TGGTAGTAG----GAA-TGTATAGC-CGTCGGTGTAGCGGA-CGTGGGA-GTGGCAAGC-TTAAGGGA-TG--AAGCC-GGGGTAACA-TGTCGGA-TGC-GATCAT-A Aeg_spelt CCAGCACTAAAG-C-ACC-GGATCCCAT-CAG-AACTCCGAAGTTAAGCGTGCTTGGGCGAGAGTAGTACKAGGATGGGTGACCTCCTGGGAAG-TCCTYGTGTT Aeg_tau CCAGCACTAAMG-C-W2C-GGATCCCAT-CA32AMCTYYKAAGTTAAGCGTGCTTGGGCGAGAGTWGTACTAGGATGGGTGACCTC24333AAG2TCCTCGTGTT Agro_cris YCAGCACTAAAG-S-ACY-GGATCCCAT-CAG-AACTCCRAWGTTAAGCGTGCTTGGRSGAGAGTAGTACTAGGATGGGTGACCTCYTGGGAAG-TCCTCRTGTT Aust_ret CCAGCACTAAAG-C-ACY-GGATCCYAT-CAG-AACTCCGAAGTTAAGCGTGCTTGGGCGAGAGTAGTACTAGGATGGGTGACCTCCTGGGAAG-TCCTCGTGTT Crites[_brev] CCAGCACTAAAG-C-ACC-GGATCCCATY-AG-AACTCC3AAGTTAAGCGTGCTTGGGCGAGAGWAGTACTAGGATGGGTGACCTCCTGGGAAG-TCCTSGTGYT Das_vil CCAGCACTAAAG-C-ACC-GGATCCCAT-CAG-AACTCCGAAGTTAAGCGTGCTTGGGCGAGAGTAGTACTAGGATGGGTGACCTCCTGGGAAG-TCCTCGTGTT Hord_bulb CCAGCACTAAAG-C-ACC-GGATCCCAT-CAG-AACTCCGAAGTTAAGCGTGCTTGGGCGAGAGTAGTACTAGGATGGGTGACCTTCTGGGAAG-TCCTCGTGTT Pse_spic CCAGCACTAAAG-C-ACC-GGATCCCAT-CAG-AACTCCGAAGTTAAGCATGCTTGGGCGAGAGTAGTACTAGGATGGGTGACCTCCTGGGAAG-TACTCCTGTT Sec_cer CCAGCACTAAAG-C-ACC-GGATCCCAT-CAR-AAMTCCGAAGTTAAGCGTGCTTGGGCGAGAGTAGTACTAGGATGGGTGACCTCCTGGGAAG-TCCTCGTGTT Sec_mon CCAGCACTAAA3Y2-ACC-GGATCCCAT-CAG-AACTCCGAAGTTAAGCGTGCTTGGGCGAGAGTRGTACTAGGATGGGTGACCTCCTGGGAAG-TCCTCRTGTT Thino_elon ATGGCAGTAAAG-C-TGT-GGATCCCAT-GAG-AACTCTGAAGTTAAGCGTGCTTGGGCGAGAGTAGTACTAGGATGGGTGACCTCTTGGGAAG-TCCTCGTGTT Trit_mon CCAGCACTAAAG-C-ACC-GGATCCCATT-AG-AACTCTGATGTTAAGCGTGCTTGGGCGAGAGTAGTACTAGGATGGGTGACCTCCTGGGAAG-TCCTCGTGTT Aeg_spelt GCATTCCC Aeg_tau GCATTCCC Agro_cris GCATTYCC Aust_ret GYATTCCC Crites[_brev] GCATTCCC Das_vil GCATTCCC Hord_bulb GCATTCC- Pse_spic GCATTCCC Sec_cer GCATTCCM Sec_mon GCATTCCM Thino_elon ACATTCCC Trit_mon GCATTCCC [ITS nchar=607] Aeg_spelt TCGTGACCCTGACCAAAACAGACCGCGCACGCGTCATCCAATCCGTCGGTGACGG-CACT Aeg_tau TCGTGACCCTGACCAAAACAGACCGCGCACGCGTCATCCAATCCGTCGGTGACGG-CACT Agro_cris TCGTGACCCTGACCAAAACAGACCGCGCACGCGTCATCCAATCCTCCGGCGACGG-CATC Aust_ret TCGTGACCCTGACCAAAACAGACCGCGCACGCGTCATCCAATCCGCCGGCGACGA-CATC Crites[_viol] TCGTGACCCTGACCAAAACAGACCGCGCTCGTGTCATCCAATCCGCCGGCGGTGG-CACC Das_vil TCGTGACCCTGACCAAAACAGACCGTGCACGTGTCATCCAACCCGTCGGCGACGG-C-CC Hord_bulb TCGTGACCCTGACCAAAACAGACCGTGCTAGCGTCATCCAATCCTCCGACGACGG-CATC Pse_spic TCGTGACCCTGACCAAAACAGACCGCGCACGCGTCATCCAATCCGTCGGCGACGG-CACC Sec_cer TCGTGACCCTGACCAAAACAGACCGCGCACGCGTCATCCAATCCGTCGGTGACGG-CACC Sec_mon TCGTGACCCTGACCAAAACAGACCGCGCACGCGTCATCCAATCCGTCGGTGACGG-CACC Thino_elon TCGTGACCCTGACCAAAACAGACCGCGCACGCGTCATCCAATCCGTCGGCGACGG-CATC Trit_mon TCGTGACCCTGACCAAAACAGACCGTGCACGCGTCATCCAATCCGTCGGCGATGG-CATT Aeg_spelt GTCCGTCGCTCGGCCAAT--GCCTCGACCACCTCCCCTCCTCGGAGCGGGTGGTGGCTCG Aeg_tau GTCCGTCGCTCGGCCAAT--GCCTCGACCACCTCCCCTCCTCGGAGCGGGTGGTGGCTCG Agro_cris GTCTGTCGCTCGGCCAAT--TCCTCGACCACCTCCCCTCCTCGGAGTGGG----GGCTCG Aust_ret GTTCGTCGCTCGGCCAAG--TCCTCGACCACCTCCCCTCCTCGGAGCGGG----GGCTCG Crites[_viol] AACCGTCGCTCGGCCAAG--CCCTCGACCACCTCCACTCCTCGGA----GTGGGGGCTCG Das_vil GTCCGTCGCTCGGCCAAG--TCCTCGACCACCTCCCCTCCTCGGAGTGGGTGGGGGCTCG Hord_bulb GTCCGTCGCTCGGCCAA--TTCCTCGACCGCCTCCACTCCTAGGAGAGGG----GGCTCG Pse_spic GTCCGTCGCTCGGCCAAG--TCCTCGACCACCTCCCCTCCTCGGAGTGGGTGGGGGCTCG Sec_cer GTCCGTCGCTCGGCC--TATGCCTCGACCACCTCCCCTCCACGGAGTGGGTGGGGGCTCG Sec_mon GTCCGTCGCTCGGCC--TATGCCTCGACCACCTCCCCTCCACGGAGTGGGTGGGGGCTCG Thino_elon GTCTGTCGCTCGACCAAT--GCCCCGACCACCTCCCCTCCTTGGAGTGGGTGGGGGCTCG Trit_mon GTCCGTCGCTCGGCCAATATGCCTCGACCACCTCCCCTCCTTGGAGTGGGTGGGGGCTCG Aeg_spelt GGGTAAAAGAACCCACGGCGCCGAAGGCGTCAAGGAACACTGTGCCTAACCCGGGGGCAT Aeg_tau GGGTAAAAGAACCCACGGCGCCGAAGGCGTCAAGGAACACTGTGCCTAACCCGGGGGCAT Agro_cris GGGTAAAAGAACCCACGGCGCCGAAGGCGTCAAGGAACACTGTGCCTAACCCGGGGGCAT Aust_ret GGGTAAAAGAACC-ACGGCGCCGAAGGCGTCAAGGAACACTGTGCCTAACCCGGGGGCAT Crites[_viol] GGGCAAAAGAACCCACGGCGCCGAAGGCGTCAAGGAACACTGTGCCTAACTCGGGGTCAT Das_vil GGGTAAAAGAACC-ACGGCGCCGAAGGCGTCAAGGAACACTGTGCCTAACCCGGGGGCAT Hord_bulb GGGTAAAAGAACCCACGGCGCCGAACGCGTCAAGGAACACTGTGCCTAACCCGGGGGAAT Pse_spic GGGTAAAAGAACCCACGGCGCCGAAGGCGTCAAGGAACACTGTGCCTAACCCGGGGGCAT Sec_cer AGGCAAAAGAACCCACGGCGCCGAAGGCGTCAAGGAACACTGTGCCTAACACGGGGCCAT Sec_mon AGGCAAAAGAACCCACGGCGCCGAAGGCGTCAAGGAACACTGTGCCTAACACGGGGCCAT Thino_elon GGGTAAAAGAACCCACGGCGCCGAAGGCGTCAAGGAACACTGTGCCTAACCCGGGGGCAT Trit_mon GGGTAAAAGAACCCACGGCGCCGAAGGCGTCAAGGAACACTGTGCCTAACCCGGGGGCAT Aeg_spelt GGCTA-GCTTGCTAGCCGTCCCTTGTGTTGCAAAGCTATTTAATCCACACGACTCTCGGC Aeg_tau GGCTA-GCTTGCTAGCCGTCCCTTGTGTTGCAAAGCTATTTAATCCACACGACTCTCGGC Agro_cris GGCTA-GCTTGCTAGCCGTCCCCCGTGTTGCAAAGCTATTTAATCCACACGACTCTCGGC Aust_ret GGCTA-GCTTGCTAGCCGTCCCCCGTGTTGCAAAGCTATTTAATCCACACGACTCTCGGC Crites[_viol] GGCTA-GCTTGCTAGTCGTCCCTCGTGTTGCAAAGCTATTTAATCCACACGACTCTCGGC Das_vil GGCCA-GCTTGCTAGCTGTCCCCCGTGTTGCAAAGCTATATAATCCACACGACTCTCGGC Hord_bulb GGCTA-GCTTGCTAATCATCCCTCGTGTTGCAAAGATATTTAATCCACACGACTCTCGGC Pse_spic GGCTA-GCTTGCTAGCCGTCCCCCGTGTTGCAAAGCTATTTAATCCACACGACTCTCGGC Sec_cer GGCTA-GCTTGCTAGCTGTGACTCGTGTTGCAAAGCTATTTAATCCACACGACTCTCGGC Sec_mon GGCTA-GCTTGCTAGCTGTGACTCGTGTTGCAAAGCTATTTAATCCACACGACTCTCGGC Thino_elon GGCTA-GCTTGCTAGCCGTCCCTCGTGTTGCAAAGCTATTTAATCCACACGACTCTCGGC Trit_mon GGCTA-GCTTGCTAGCCATCCCTTGTGTTGCAAAGCTATTTAATCCACACGACTCTCGGC Aeg_spelt AACGGATATCTCGGCTCTCGCATCGATGAAGAACGTAGCGAAATGCGATACCTGGTGTGA Aeg_tau AACGGATATCTCGGCTCTCGCATCGATGAAGAACGTAGCGAAATGCGATACCTGGTGTGA Agro_cris AACGGATATCTCGGCTCTCGCATCGATGAAGAACGTAGCGAAATGCGATACCTGGTGTGA Aust_ret AACGGATATCTCGGCTCTCGCATCGATGAAGAACGTAGCGAAATGCGATACCTGGTGTGA Crites[_viol] AACGGATATCTCGGCTCTCGCATCGATGAAGAACGTAGCGAAATGCGATACCTGGTGTGA Das_vil AACGGATATCTCGGCTCTCGCATCGATGAAGAACGTAGCGAAATGCGATACCTGGTGTGA Hord_bulb AACGGATATCTCGGCTCTCGCATCGATGAAGAACGTAGCGAAATGCGATACCTGGTGTGA Pse_spic AACGGATATCTCGGCTCTCGCATCGATGAAGAACGTAGCGAAATGCGATACCTGGTGTGA Sec_cer AACGGATATCTCGGCTCTCGCATCGATGAAGAACGTAGCGAAATGCGATACCTGGTGTGA Sec_mon AACGGATATCTCGGCTCTCGCATCGATGAAGAACGTAGCGAAATGCGATACCTGGTGTGA Thino_elon AACGGATATCTCGGCTCTCGCATCGATGAAGAACGTAGCGAAATGCGATACCTGGTGTGA Trit_mon AACGGATATCTCGGCTCTCGCATCGATGAAGAACGTAGCGAAATGCGATACCTGGTGTGA Aeg_spelt ATTGCAGAATCCCGCGAACCATCGAGTCTTTGAACGCAAGTTGCGCCCGAGGCCACTCGG Aeg_tau ATTGCAGAATCCCGCGAACCATCGAGTCTTTGAACGCAAGTTGCGCCCGAGGCCACTCGG Agro_cris ATTGCAGAATCCCGCGAACCATCGAGTCTTTGAACGCAAGTTGCGCCCGAGGCCACCCGG Aust_ret ATTGCAGAATCCCGCGAACCATCGAGTCTTTGAACGCAAGTTGCGCCCGAGGCCACTCGG Crites[_viol] ATTGCAGAATCCCGCGAACCATCGAGTCTTTGAACGCAAGTTGCGCCCGAGGCCACTCGG Das_vil ATTGCAGAATCCCGCGAACCATCGAGTCTTTGAACGCAAGTTGCGCCCGAGGCCACTCGG Hord_bulb ATTGCAGAATCCCGCGAACCATCGAGTCTTTGAACGCAAGTTGCGCCCGAGGCCACCCGG Pse_spic ATTGCAGAATCCCGCGAACCATCGAGTCTTTGAACGCAAGTTGCGCCCGAGGCCACTCGG Sec_cer ATTGCAGAATCCCGCGAACCATCGAGTCTTTGAACGCAAGTTGCGCCCGAGGCCACTCGG Sec_mon ATTGCAGAATCCCGCGAACCATCGAGTCTTTGAACGCAAGTTGCGCCCGAGGCCACTCGG Thino_elon ATTGCAGAATCCCGCGAACCATCGAGTCTTTGAACGCAAGTTGCGCCCGAGGCCACTCGG Trit_mon ATTGCAGAATCCCGCGAACCATCGAGTCTTTGAACGCAAGTTGCGCCCGAGGCCACTCGG Aeg_spelt CCGAGGGCACGCCTGCCTGGGCGTCACGCCAAAACACGCTCCCAACCACCCTCATCGGGA Aeg_tau CCGAGGGCACGCCTGCCTGGGCGTCACGCCAAAACACGCTCCCAACCACCCTCATCGGGA Agro_cris CCGAGGGCACGCCTGCCTGGGCGTCACGCCAAAACACGCTCCCAACCCCCCTCATCGGGA Aust_ret CCGAGGGCACGCCTGCCTGGGCGTCACGCCAAAACACGCTCCCAACCCCC-TCATCGGGA Crites[_viol] CCGAGGGCACGCCTGCCTGGGCGTCACGCCAAAACACGCTCTCAACCACCCTCATTGGGA Das_vil CCGAGGGCACGCCTGCCTGGGCGTCACGCCAAAACACGCTCCCA---CCCCTCATCGGGT Hord_bulb CCGAGGGCACGCCTGCCTGGGCGTCACGCCAAAACACGCTCCCAACCACCCTCTTTAGGA Pse_spic CCGAGGGCACGCCTGCCTGGGCGTCACGCCAAAACACGCTCCCAATC-CCCTCATCGGGA Sec_cer CCGAGGGCACGCCTGCCTGGGCGTCACGCCAAAACACGCTCCCA-CACCCCTCATTGGGA Sec_mon CCGAGGGCACGCCTGCCTGGGCGTCACGCCAAAACACGCTCCCA-CACCCCTCATTGGGA Thino_elon CCGAGGGCACGCCTGCCTGGGCGTCACGCCAAAACACGCTCCCAAAC-CCCTCATCGGGA Trit_mon CCGAGGGCACGCCTGCCTGGGCGTCACGCCAAAACACGCTCCCAACC-CCCTCATCGGGA Aeg_spelt ATCGGGATGCGGCATCTGGTCCCTCGTCTCGCAAGGGGCGGTGGACCGAAGATCGGGCTG Aeg_tau ATCGGGATGCGGCATCTGGTCCCTCGTCTCGCAAGGGGCGGTGGACCGAAGATCGGGCTG Agro_cris ATCGGGATGCGGCATCTGGTCCCTCGTCTCGCAAGGGGCGGTGGACCGAAGATCGGGCTG Aust_ret ATTGGGATGCGGCATCTGGTCCCTCGTCTCGCAAGGGGCGGTGGACCGAAGATCGGGCTG Crites[_viol] ATCGGGATGCGGCATATGGTCCCTCGTCCCGCAAGGGGCGGTGGGCCGAAGATCGGGCTG Das_vil ATCGGGATGCGGCATCTGGTTCCTCGTCTCGTAAGGGGCGGTGGACCGAAGATCGGGCTG Hord_bulb ATTGGGATGCGGCATATGGTCCCTCGTCCTACAAGGGGCGGTGGGCCGAAGATCGGGCTG Pse_spic ATCGGGATGCGGCATCTGGTCCCTCGTCTCGCAAGGGGCGGTGGACCGAAGATCGGGCTG Sec_cer ATCGGGATGCGGCATCTGGTCCCTCGTCTCGCAAGGGGCGGTGGACCGAAGTTCGGGCTG Sec_mon ATCGGGATGCGGCATCTGGTCCCTCGTCTCGCAAGGGGCGGTGGACCGAAGTTCGGGCTG Thino_elon ATCGGGATGCGGCATCTGGTCCCTCGTCTCGCAAGGGGCGGTGGACCGAAGATCGGGCTG Trit_mon ATCAGGATGCGGCATCTGGTCCCTCGTCTCGCAAGGGGCGGTGGACCGAAGATCGGGCTG Aeg_spelt CCGGTGTACCGCGCCGGACACAGCGCATGGTGGGCGTCCTCGCTTTA-TCAACGCAGTGC Aeg_tau CCGGTGTACCGCGCCGGACACAGCGCATGGTGGGCGTCCTCGCTTTA-TCAACGCAGTGC Agro_cris CCGGCGTACCGCGCCGGACACAGCGCATGGTGGGCGTCCTCGCTTTA-TCAACGCAGTGC Aust_ret CCGGCGTACCGCGCCGGACACAGCGCATGGTGGGCGTCCTAGCTTTA-TCAACGCAGTGC Crites[_viol] CCGGTGCACCGCGTCGGACACAGCGCATGGTGGGCGTTCTTGCTTTA-TCAACGTAGTGC Das_vil CTGGCGTACCACGCCGGACACAGCACATGGTGGGCGTCCTCGCTTTA-TCAACGCAGTGC Hord_bulb CCGGCGTACCACGCCAGACACAGCACATGGTGGGCGTCCTCGCTTTA-TCAATGCAGTGC Pse_spic CCGGCGTACCGCGCCGGACACAGCGCATGGTGGGCGTCCTCGCTTTA-TCAACGCAGTGC Sec_cer CCGGCGTACCGTGTCAAACACAGCGCGTGGTGGGCGTCTTTGCTTTA-TCAACGCAGTGC Sec_mon CCGGCGTACCGTGTCAAACACAGCGCGTGGTGGGCGTCTTTGCTTTA-TCAACGCAGTGC Thino_elon CCGGCGTACCGCGTCGGACACAGCGCATGGTGGGCGTCCTCGCTTTA-TCAACGCAGTGC Trit_mon CCGGCGTACCGCGCCGGACACAGCGCATGGTGGGCGTCCTCGCTTTA-TCAACGCAGTGC Aeg_spelt ATCCGACGCGCAGCCGACATTATGGCCTCAGAACGACCCAGCAAACGAAGCGCACGTCGC Aeg_tau ATCCGACGCGCAGCCGACATTATGGCCTCAGAACGACCCAGCAAACGAAGCGCACGTCGC Agro_cris ATCCGACGCGTAGCCGGCATGATGGCCTCAAAACGACCCAGCGAACGAAGCGCACGTCGC Aust_ret ATCCGACGCGCAGCCGGCATTATGGCCTCAAAACGACCCAGCGAACGAAGCGCACGTCGC Crites[_viol] ATCCGACGCATAGCCGGCGTGATGGCCCCTAAAGGACCCAGCAAACGAAGCGCACGTCGC Das_vil ATCCGACGTGTAGCCGGCATGATGGCCTCAAAATGACCCAGCTAACGAAGCGCACGTCGC Hord_bulb ATCTGGTGCGTAGACGGCATTATGGCCTCAAAATGACCCAGTGAACGAAGCCCACGTCGC Pse_spic ATCCGACGCGTAGCCGGCATGATGGCCTCAAAACGACCCAGCAAACGAAGCGCACGTCGC Sec_cer ATACGACGCGTAGCCGGCATGATGGCCTCAAAACGACCCAACAAACGTAGCGCACGTCGC Sec_mon ATACGACGCGTAGCCGGCATGATGGCCTCAAAACGACCCAACAAACGTAGCGCACGTCGC Thino_elon ATCCGACGCGCAGCCGGCATGATGGCCTCAAAACGACCCAGCAAACGAAGCGCACGTCGC Trit_mon ATCCGACGCGCAGCCGGCATGACGGCCTCAAAATGACCCAGCAAACGAAGCGCACGTCGC Aeg_spelt TTCGACC Aeg_tau TTCGACC Agro_cris TTCGACC Aust_ret TTCGACC Crites[_viol] TTCGACC Das_vil TTCGACC Hord_bulb TTCGACC Pse_spic TTCGACC Sec_cer TTCGACC Sec_mon TTCGACC Thino_elon TTCGACC Trit_mon TTCGACC ; endblock; begin assumptions; charset 5slong=1-570; charset ITS=571-1177; usertype nucleotide stepmatrix = 4 ACGT 0 3 1 3 3 0 3 1 1 3 0 3 3 1 3 0 ; endblock;