# First, paste in Trapskin function. It is in the folder "larabee scripts" -- use the "fixed" version named "trapskin_function_2017.2.16_fixed_Routput" #set working directory to folder with XY .csv files #for adductor mass - the input value is for both adductors (the purple muscles, estimated value). The TrapsKin function divides this number by 2 to get the amount for 1 adductor. #for ZearchVIC1 TrapsKin(filename="XY_pts_ZearchVIC1_penF_HW0120C_100000fps_G_LRpts_NOreverb", fps = 100000, dpi=72, lmlength=0.00059, rmlength=0.00059, lmass=0.00000000847383, rmass=0.00000000847383, muscle.mass=0.000000009929108, mag = 9.2, spar= 5e-25, mandible = "both", fileout = "ZearchVIC1_100Kfps_G_NOreverb_spar25") TrapsKin(filename="XY_pts_ZearchVIC1_penF_HW0120C_100000fps_D_LRpts_NOreverb", fps = 100000, dpi=72, lmlength=0.00059, rmlength=0.00059, lmass=0.00000000847383, rmass=0.00000000847383, muscle.mass=0.000000009929108, mag = 9.2, spar= 5e-25, mandible = "both", fileout = "ZearchVIC1_100Kfps_D_NOreverb_spar25") TrapsKin(filename="XY_pts_ZearchVIC1_penF_HW0120C_100000fps_c_Lpts_NOreverb", fps = 100000, dpi=72, lmlength=0.00059, rmlength=0.00059, lmass=0.00000000847383, rmass=0.00000000847383, muscle.mass=0.000000009929108, mag = 9.2, spar= 5e-25, mandible = "left", fileout = "ZearchVIC1_100Kfps_c_NOreverb_spar25") TrapsKin(filename="XY_pts_ZearchVIC1_penF_HW0120C_80000fps_B_RLpts_NOreverb", fps = 80000, dpi=72, lmlength=0.00059, rmlength=0.00059, lmass=0.00000000847383, rmass=0.00000000847383, muscle.mass=0.000000009929108, mag = 9.2, spar= 5e-25, mandible = "both", fileout = "ZearchVIC1_80Kfps_B_NOreverb_spar25") #For Zearch indiv 2 TrapsKin(filename="XY_pts_Female__Zearch_HW0076_40Kfps_2B_Rpts_NOreverb", fps = 40000, dpi=72, lmlength=0.0006, rmlength=0.0006, lmass=0.00000000892378, rmass=0.00000000892378, muscle.mass=0.0000000104209, mag = 10.6, spar= 5e-24, mandible = "right", fileout = "Zearch_40Kfps_2B_NOreverb_spar24") #For Aotearoa2 TrapsKin(filename="XY_pts_Aotearoa2_M_HW0109A_1000fps_E_aligned_overlay_LRpts", fps = 1000, dpi=72, lmlength=0.00141, rmlength=0.00141, lmass=0.000000123823, rmass=0.000000123823, muscle.mass=0.000000121681, mag = 14.77, spar= 5e-13, mandible = "both", fileout = "Aotearoa2_M_HW0109A_1000fps_E_spar13") TrapsKin(filename="XY_pts_Aotearoa2_M_HW0109A_1000fps_D_aligned_LRpts_good", fps = 1000, dpi=72, lmlength=0.00141, rmlength=0.00141, lmass=0.000000123823, rmass=0.000000123823, muscle.mass=0.000000121681, mag = 14.77, spar= 5e-13, mandible = "both", fileout = "Aotearoa2_M_HW0109A_1000fps_D_spar13") TrapsKin(filename="XY_pts_reduced_Aotearoa2_M_HW0109A_1000fps_C_LRpts", fps = 1000, dpi=72, lmlength=0.00141, rmlength=0.00141, lmass=0.000000123823, rmass=0.000000123823, muscle.mass=0.000000121681, mag = 14.77, spar= 5e-13, mandible = "both", fileout = "Aotearoa2_M_HW0109A_1000fps_C_spar13_REDUCED") TrapsKin(filename="XY_pts_Aotearoa2_M_HW0109A_1000fps_B_aligned_LRpts", fps = 1000, dpi=72, lmlength=0.00141, rmlength=0.00141, lmass=0.000000123823, rmass=0.000000123823, muscle.mass=0.000000121681, mag = 14.77, spar= 5e-13, mandible = "both", fileout = "Aotearoa2_M_HW0109A_1000fps_B_spar13") TrapsKin(filename="XY_pts_Aotearoa2_M_HW0109A_1000fps_A_aligned_LRpts", fps = 1000, dpi=72, lmlength=0.00141, rmlength=0.00141, lmass=0.000000123823, rmass=0.000000123823, muscle.mass=0.000000121681, mag = 14.77, spar= 5e-13, mandible = "both", fileout = "Aotearoa2_M_HW0109A_1000fps_A_spar13") #for Aotearoa1 TrapsKin(filename="XY_pts_Aotearoa1_M_HW0109A_A_aligned_LRpts", fps = 1000, dpi=72, lmlength=0.00141, rmlength=0.00141, lmass=0.000000123823, rmass=0.000000123823, muscle.mass=0.000000121681, mag = 14.77, spar= 5e-13, mandible = "both", fileout = "Aotearoa1_M_HW0109A_1000fps_A_spar13") TrapsKin(filename="XY_pts_Aotearoa1_M_HW0109A_1000fps_P_aligned_LRpts", fps = 1000, dpi=72, lmlength=0.00141, rmlength=0.00141, lmass=0.000000123823, rmass=0.000000123823, muscle.mass=0.000000121681, mag = 14.77, spar= 5e-12, mandible = "both", fileout = "Aotearoa1_M_HW0109A_1000fps_P_spar12") TrapsKin(filename="XY_pts_Aotearoa1_M_HW0109A_1000fps_O_aligned_LRpts", fps = 1000, dpi=72, lmlength=0.00141, rmlength=0.00141, lmass=0.000000123823, rmass=0.000000123823, muscle.mass=0.000000121681, mag = 14.77, spar= 5e-13, mandible = "both", fileout = "Aotearoa1_M_HW0109A_1000fps_O_spar13") TrapsKin(filename="XY_bad_Aotearoa1_M_HW0109A_1000fps_N_aligned_Lchel", fps = 1000, dpi=72, lmlength=0.00141, rmlength=0.00141, lmass=0.000000123823, rmass=0.000000123823, muscle.mass=0.000000121681, mag = 14.77, spar= 5e-13, mandible = "left", fileout = "Aotearoa1_M_HW0109A_1000fps_N_spar13") TrapsKin(filename="XY_Aotearoa1_M_HW0109A_stk2_1000fps_J_Rchel", fps = 1000, dpi=72, lmlength=0.00141, rmlength=0.00141, lmass=0.000000123823, rmass=0.000000123823, muscle.mass=0.000000121681, mag = 14.77, spar= 5e-13, mandible = "right", fileout = "Aotearoa1_M_HW0109A_1000fps_J_strike2_spar13") TrapsKin(filename="XY_Aotearoa1_M_HW0109A_stk1_1000fps_J_Rchel", fps = 1000, dpi=72, lmlength=0.00141, rmlength=0.00141, lmass=0.000000123823, rmass=0.000000123823, muscle.mass=0.000000121681, mag = 14.77, spar= 5e-12, mandible = "right", fileout = "Aotearoa1_M_HW0109A_1000fps_J_strike1_spar12") TrapsKin(filename="XY_Aotearoa1_M_HW0109A_1000fps_M_aligned_Rchel", fps = 1000, dpi=72, lmlength=0.00141, rmlength=0.00141, lmass=0.000000123823, rmass=0.000000123823, muscle.mass=0.000000121681, mag = 14.77, spar= 5e-13, mandible = "right", fileout = "Aotearoa1_M_HW0109A_1000fps_M_spar13") TrapsKin(filename="XY_Aotearoa1_M_HW0109A_1000fps_L_aligned_LRchel_v2", fps = 1000, dpi=72, lmlength=0.00141, rmlength=0.00141, lmass=0.000000123823, rmass=0.000000123823, muscle.mass=0.000000121681, mag = 14.77, spar= 5e-13, mandible = "both", fileout = "Aotearoa1_M_HW0109A_1000fps_L_spar13") TrapsKin(filename="XY_Aotearoa1_M_HW0109A_1000fps_K_aligned_crop_2_LRchel", fps = 1000, dpi=72, lmlength=0.00141, rmlength=0.00141, lmass=0.000000123823, rmass=0.000000123823, muscle.mass=0.000000121681, mag = 14.77, spar= 5e-13, mandible = "both", fileout = "Aotearoa1_M_HW0109A_1000fps_K_spar13") TrapsKin(filename="XY_Aotearoa1_M_HW0109A_1000fps_H_LRpts", fps = 1000, dpi=72, lmlength=0.00141, rmlength=0.00141, lmass=0.000000123823, rmass=0.000000123823, muscle.mass=0.000000121681, mag = 14.77, spar= 5e-12, mandible = "both", fileout = "Aotearoa1_M_HW0109A_1000fps_H_spar12") TrapsKin(filename="XY_Aotearoa1_M_HW0109A_1000fps_F_LRpts", fps = 1000, dpi=72, lmlength=0.00141, rmlength=0.00141, lmass=0.000000123823, rmass=0.000000123823, muscle.mass=0.000000121681, mag = 14.77, spar= 5e-13, mandible = "both", fileout = "Aotearoa1_M_HW0109A_1000fps_F_spar13") TrapsKin(filename="XY_Aotearoa1_M_HW0109A_1000fps_E_RLchel", fps = 1000, dpi=72, lmlength=0.00141, rmlength=0.00141, lmass=0.000000123823, rmass=0.000000123823, muscle.mass=0.000000121681, mag = 14.77, spar= 5e-13, mandible = "both", fileout = "Aotearoa1_M_HW0109A_1000fps_E_spar13") TrapsKin(filename="XY_Aotearoa1_M_HW0109A_1000fps_D_LRpts", fps = 1000, dpi=72, lmlength=0.00141, rmlength=0.00141, lmass=0.000000123823, rmass=0.000000123823, muscle.mass=0.000000121681, mag = 14.77, spar= 5e-13, mandible = "both", fileout = "Aotearoa1_M_HW0109A_1000fps_D_spar13") TrapsKin(filename="XY_Aotearoa1_M_HW0109A_1000fps_C_RightChel", fps = 1000, dpi=72, lmlength=0.00141, rmlength=0.00141, lmass=0.000000123823, rmass=0.000000123823, muscle.mass=0.000000121681, mag = 14.77, spar= 5e-13, mandible = "right", fileout = "Aotearoa1_M_HW0109A_1000fps_C_spar13")