Treatment Sample Evidence Seq ID Position Mutation Frequency Annotation Gene Gene.Assigned Description Real? BC Include? Synoynous Reason Notes "High carbon, large bead" CBT718 RA NC_008542 "6,491" G?C 6.00% intergenic (+793/?18) gyrB ? / ? Bcen2424_0004  Bcen2424_0004 ? DNA gyrase subunit B/integrase catalytic subunit N N N Ends of reads/misaligns "Low carbon, large bead" CBT733 JC NC_008542 "24,143" #NAME? 5.60% coding (140/234 nt) Bcen2424_0021 ? Bcen2424_0021 ? hypothetical protein N N N Only at ends of reads "High carbon, small bead" CBT727 RA NC_008542 "80,791" C?T 5.60% A100V (GCG?GTG)  Bcen2424_0079 ? Bcen2424_0079 ? AsnC family transcriptional regulator Y Y N "High carbon, small bead" CBT727 RA NC_008542 "125,864" ?1 bp 5.40% coding (1284/1653 nt) Bcen2424_0117 ? Bcen2424_0117 ? acyl?CoA dehydrogenase domain?containing protein Y Y N "High carbon, large bead" CBT722 JC NC_008542 "142,659" #NAME? 16.70% coding (668/885 nt) Bcen2424_0131 ? Bcen2424_0131 ? LysR family transcriptional regulator N N N Only at ends of reads "High carbon, planktonic" CBT736 RA NC_008542 "145,158" T?C 6.80% intergenic (+42/+200) Bcen2424_0132 ? / ? Bcen2424_0133 None major facilitator transporter/pyridoxamine 5'?phosphate oxidase?like FMN?binding protein N N N "Intergenic and not upstream, reads appear misaligned" "High carbon, small bead" CBT729 JC NC_008542 "145,201" ?49 bp 5.20% intergenic (+85/+109) Bcen2424_0132 ? / ? Bcen2424_0133 None major facilitator transporter/pyridoxamine 5'?phosphate oxidase?like FMN?binding protein Y N N Intergenic and not upstream "Low carbon, planktonic" CBT743 JC NC_008542 "163,756" #NAME? 51.20% intergenic (?189/+203) Bcen2424_0148 ? / ? Bcen2424_0149 None oxidoreductase domain?containing protein/hypothetical protein Y N N Intergenic and not upstream "High carbon, small bead" CBT725 JC NC_008542 "205,452" #NAME? 15.70% intergenic (+376/?1443) Bcen2424_0184 ? / ? Bcen2424_0185 None NmrA family protein/hypothetical protein N N N Intergenic and not upstream "High carbon, planktonic" CBT736 JC NC_008542 "293,633" #NAME? 6.30% coding (2/1020 nt) motB ? motB ? flagellar motor protein MotB N N N Only at ends of reads "High carbon, planktonic" CBT739 RA NC_008542 "299,275" A?T 5.00% D442V (GAC?GTC)  Bcen2424_0258 ? Bcen2424_0258 ? methyl?accepting chemotaxis sensory transducer Y Y N "High carbon, planktonic" CBT739 RA NC_008542 "319,400" C?T 6.40% A42V (GCG?GTG)  Bcen2424_0277 ? Bcen2424_0277 ? 2?nitropropane dioxygenase Y Y N "High carbon, small bead" CBT728 RA NC_008542 "366,666" G?T 6.00% intergenic (+55/+83) Bcen2424_0320 ? / ? Bcen2424_0321 None hypothetical protein/4?hydroxyphenylpyruvate dioxygenase Y N N Intergenic and not upstream "High carbon, planktonic" CBT739 JC NC_008542 "382,136" ?3 bp 6.90% noncoding (75?77/117 nt) Bcen2424_R0010a ? Bcen2424_R0010a ? 5S ribosomal RNA Y Y N "High carbon, planktonic" CBT740 RA NC_008542 "391,787" C?T 100% P663L (CCG?CTG)  rpoB ? rpoB ? DNA?directed RNA polymerase subunit beta Y Y N "High carbon, planktonic" CBT741 RA NC_008542 "397,172" G?A 100% R1082H (CGT?CAT)  Bcen2424_0341 ? Bcen2424_0341 ? DNA?directed RNA polymerase subunit beta' Y Y N "High carbon, planktonic" CBT736 RA NC_008542 "398,030" G?T 100% G1368V (GGT?GTT)  Bcen2424_0341 ? Bcen2424_0341 ? DNA?directed RNA polymerase subunit beta' Y Y N "High carbon, planktonic" CBT741 RA NC_008542 "402,440" C?G 100% A258G (GCG?GGG)  Bcen2424_0345 ? Bcen2424_0345 ? elongation factor G Y Y N "High carbon, planktonic" CBT741 RA NC_008542 "403,352" C?G 100% A562G (GCT?GGT)  Bcen2424_0345 ? Bcen2424_0345 ? elongation factor G Y Y N "High carbon, planktonic" CBT739 RA NC_008542 "434,437" C?T 6.30% A103A (GCC?GCT)  Bcen2424_0388 ? Bcen2424_0388 ? hypothetical protein Y N Y Synonymous "High carbon, planktonic" CBT740 RA NC_008542 "445,260" G?A 6.30% Q293Q (CAG?CAA)  ugpC ? ugpC ? glycerol?3?phosphate transporter ATP?binding subunit Y N Y Synonymous "High carbon, planktonic" CBT740 RA NC_008542 "454,130" T?A 100% F324I (TTC?ATC)  gltD ? gltD ? glutamate synthase subunit beta Y Y N "High carbon, small bead" CBT727 RA NC_008542 "465,029" C?A 5.10% F208L (TTC?TTA)  thiG ? thiG ? thiazole synthase Y Y N "High carbon, large bead" CBT721 RA NC_008542 "568,104" G?A 5.10% A101V (GCG?GTG)  Bcen2424_0509 ? Bcen2424_0509 ? HemK family modification methylase Y Y N "High carbon, planktonic" CBT740 RA NC_008542 "573,388" G?C 6.80% P422P (CCG?CCC)  Bcen2424_0514 ? Bcen2424_0514 ? peptidase M24 N N Y "Synonymous, reads appear misaligned" "High carbon, planktonic" CBT740 JC NC_008542 "632,868" #NAME? 17.90% coding (50/753 nt) Bcen2424_0562 ? Bcen2424_0562 ? polypeptide?transport?associated domain?containing protein N N N Only at ends of reads "Low carbon, planktonic" CBT742 JC NC_008542 "647,891" #NAME? 6.10% coding (465/912 nt) Bcen2424_0576 ? Bcen2424_0576 ? prepilin peptidase Y Y N "Low carbon, planktonic" CBT742 JC NC_008542 "647,892" ?9 bp 9.20% coding (456?464/912 nt) Bcen2424_0576 ? Bcen2424_0576 ? prepilin peptidase Y Y N "Low carbon, large bead" CBT732 RA NC_008542 "657,193" C?G 72.10% T149T (ACG?ACC)  Bcen2424_0585 ? Bcen2424_0585 ? hypothetical protein Y N Y Synonymous "Low carbon, large bead" CBT731 RA NC_008542 "663,565" ?1 bp 5.60% coding (493/894 nt) Bcen2424_0591 ? Bcen2424_0591 ? cytochrome c assembly protein Y Y N "High carbon, large bead" CBT721 RA NC_008542 "670,653" C?A 6.50% A98A (GCC?GCA)  Bcen2424_0598 ? Bcen2424_0598 ? hypothetical protein N N Y "Synonymous, reads poor quality" "High carbon, small bead" CBT725 RA NC_008542 "670,653" C?A 13.20% A98A (GCC?GCA)  Bcen2424_0598 ? Bcen2424_0598 ? hypothetical protein N N Y Synonymous "Low carbon, large bead" CBT733 RA NC_008542 "670,653" C?A 10.20% A98A (GCC?GCA)  Bcen2424_0598 ? Bcen2424_0598 ? hypothetical protein N N Y "Synonymous, reads appear misaligned" "High carbon, planktonic" CBT740 RA NC_008542 "670,653" C?A 9.70% A98A (GCC?GCA)  Bcen2424_0598 ? Bcen2424_0598 ? hypothetical protein N N Y "Synonymous, reads appear misaligned" "Low carbon, planktonic" CBT745 RA NC_008542 "670,653" C?A 11.10% A98A (GCC?GCA)  Bcen2424_0598 ? Bcen2424_0598 ? hypothetical protein N N Y "Synonymous, reads appear misaligned" "Low carbon, planktonic" CBT746 RA NC_008542 "670,653" C?A 12.40% A98A (GCC?GCA)  Bcen2424_0598 ? Bcen2424_0598 ? hypothetical protein N N Y "Synonymous, reads appear misaligned" "High carbon, large bead" CBT720 RA NC_008542 "670,653" C?A 10.50% A98A (GCC?GCA)  Bcen2424_0598 ? Bcen2424_0598 ? hypothetical protein Y N Y Synonymous "Low carbon, planktonic" CBT747 RA NC_008542 "688,783" C?T 17.60% intergenic (+132/?218) Bcen2424_0616 ? / ? Bcen2424_0617 None hypothetical protein/IclR family transcriptional regulator Y N N Intergenic and not upstream "Low carbon, planktonic" CBT745 RA NC_008542 "689,268" C?G 100% R90G (CGC?GGC)  Bcen2424_0617 ? Bcen2424_0617 ? IclR family transcriptional regulator Y Y N "Low carbon, planktonic" CBT746 RA NC_008542 "689,268" C?T 73.20% R90C (CGC?TGC)  Bcen2424_0617 ? Bcen2424_0617 ? IclR family transcriptional regulator Y Y N In different background from P100L "Low carbon, planktonic" CBT747 RA NC_008542 "689,268" C?T 87.50% R90C (CGC?TGC)  Bcen2424_0617 ? Bcen2424_0617 ? IclR family transcriptional regulator Y Y N "Low carbon, planktonic" CBT743 RA NC_008542 "689,269" G?A 10.90% R90H (CGC?CAC)  Bcen2424_0617 ? Bcen2424_0617 ? IclR family transcriptional regulator Y Y N On different background than P100T "Low carbon, planktonic" CBT743 RA NC_008542 "689,298" C?A 30.70% P100T (CCG?ACG)  Bcen2424_0617 ? Bcen2424_0617 ? IclR family transcriptional regulator Y Y N On different background than R90H "Low carbon, planktonic" CBT746 RA NC_008542 "689,299" C?T 25.00% P100L (CCG?CTG)  Bcen2424_0617 ? Bcen2424_0617 ? IclR family transcriptional regulator Y Y N In different background from R90C "Low carbon, planktonic" CBT742 RA NC_008542 "689,353" T?A 100% V118E (GTG?GAG)  Bcen2424_0617 ? Bcen2424_0617 ? IclR family transcriptional regulator Y Y N "Low carbon, planktonic" CBT743 RA NC_008542 "739,755" G?A 5.00% A136A (GCG?GCA)  Bcen2424_0665 ? Bcen2424_0665 ? FAD dependent oxidoreductase N N Y "Synonymous, reads appear misaligned" "High carbon, small bead" CBT725 JC NC_008542 "763,733" #NAME? 8.30% coding (231/459 nt) Bcen2424_0684 ? Bcen2424_0684 ? D?tyrosyl?tRNA(Tyr) deacylase N N N Only at ends of reads "High carbon, small bead" CBT727 RA NC_008542 "784,937" A?G 5.80% M227T (ATG?ACG)  Bcen2424_0705 ? Bcen2424_0705 ? "helix?turn?helix, type 11 domain?containing protein" N N N Only at ends of reads "High carbon, planktonic" CBT736 RA NC_008542 "809,300" A?T 100% intergenic (+181/?451) Bcen2424_0725 ? / ? Bcen2424_0726 None LysR family transcriptional regulator/catalase/peroxidase HPI Y N N Intergenic and not upstream "High carbon, planktonic" CBT738 RA NC_008542 "809,300" A?T 100% intergenic (+181/?451) Bcen2424_0725 ? / ? Bcen2424_0726 None LysR family transcriptional regulator/catalase/peroxidase HPI Y N N Intergenic and not upstream "High carbon, small bead" CBT727 RA NC_008542 "816,545" C?A 5.60% V118L (GTG?TTG)  glcF ? glcF ? glycolate oxidase iron?sulfur subunit Y Y N "High carbon, small bead" CBT726 RA NC_008542 "830,102" G?T 5.90% P400T (CCG?ACG)  Bcen2424_0741 ? Bcen2424_0741 ? hypothetical protein Y Y N "High carbon, large bead" CBT718 RA NC_008542 "838,824" A?G 100% T154A (ACC?GCC)  hemH ? hemH ? ferrochelatase N N N Present in ancestor "High carbon, large bead" CBT720 RA NC_008542 "838,824" A?G 100% T154A (ACC?GCC)  hemH ? hemH ? ferrochelatase N N N Present in ancestor "High carbon, large bead" CBT721 RA NC_008542 "838,824" A?G 100% T154A (ACC?GCC)  hemH ? hemH ? ferrochelatase N N N Present in ancestor "High carbon, large bead" CBT722 RA NC_008542 "838,824" A?G 100% T154A (ACC?GCC)  hemH ? hemH ? ferrochelatase N N N Present in ancestor "High carbon, large bead" CBT723 RA NC_008542 "838,824" A?G 100% T154A (ACC?GCC)  hemH ? hemH ? ferrochelatase N N N Present in ancestor "High carbon, small bead" CBT724 RA NC_008542 "838,824" A?G 100% T154A (ACC?GCC)  hemH ? hemH ? ferrochelatase N N N Present in ancestor "High carbon, small bead" CBT725 RA NC_008542 "838,824" A?G 100% T154A (ACC?GCC)  hemH ? hemH ? ferrochelatase N N N Present in ancestor "High carbon, small bead" CBT726 RA NC_008542 "838,824" A?G 100% T154A (ACC?GCC)  hemH ? hemH ? ferrochelatase N N N Present in ancestor "High carbon, small bead" CBT727 RA NC_008542 "838,824" A?G 100% T154A (ACC?GCC)  hemH ? hemH ? ferrochelatase N N N Present in ancestor "High carbon, small bead" CBT728 RA NC_008542 "838,824" A?G 100% T154A (ACC?GCC)  hemH ? hemH ? ferrochelatase N N N Present in ancestor "High carbon, small bead" CBT729 RA NC_008542 "838,824" A?G 100% T154A (ACC?GCC)  hemH ? hemH ? ferrochelatase N N N Present in ancestor "Low carbon, large bead" CBT730 RA NC_008542 "838,824" A?G 100% T154A (ACC?GCC)  hemH ? hemH ? ferrochelatase N N N Present in ancestor "Low carbon, large bead" CBT731 RA NC_008542 "838,824" A?G 100% T154A (ACC?GCC)  hemH ? hemH ? ferrochelatase N N N Present in ancestor "Low carbon, large bead" CBT732 RA NC_008542 "838,824" A?G 100% T154A (ACC?GCC)  hemH ? hemH ? ferrochelatase N N N Present in ancestor "Low carbon, large bead" CBT733 RA NC_008542 "838,824" A?G 100% T154A (ACC?GCC)  hemH ? hemH ? ferrochelatase N N N Present in ancestor "Low carbon, large bead" CBT734 RA NC_008542 "838,824" A?G 100% T154A (ACC?GCC)  hemH ? hemH ? ferrochelatase N N N Present in ancestor "Low carbon, large bead" CBT735 RA NC_008542 "838,824" A?G 100% T154A (ACC?GCC)  hemH ? hemH ? ferrochelatase N N N Present in ancestor "High carbon, planktonic" CBT736 RA NC_008542 "838,824" A?G 100% T154A (ACC?GCC)  hemH ? hemH ? ferrochelatase N N N Present in ancestor "High carbon, planktonic" CBT737 RA NC_008542 "838,824" A?G 100% T154A (ACC?GCC)  hemH ? hemH ? ferrochelatase N N N Present in ancestor "High carbon, planktonic" CBT738 RA NC_008542 "838,824" A?G 100% T154A (ACC?GCC)  hemH ? hemH ? ferrochelatase N N N Present in ancestor "High carbon, planktonic" CBT739 RA NC_008542 "838,824" A?G 100% T154A (ACC?GCC)  hemH ? hemH ? ferrochelatase N N N Present in ancestor "High carbon, planktonic" CBT740 RA NC_008542 "838,824" A?G 100% T154A (ACC?GCC)  hemH ? hemH ? ferrochelatase N N N Present in ancestor "High carbon, planktonic" CBT741 RA NC_008542 "838,824" A?G 100% T154A (ACC?GCC)  hemH ? hemH ? ferrochelatase N N N Present in ancestor "Low carbon, planktonic" CBT742 RA NC_008542 "838,824" A?G 100% T154A (ACC?GCC)  hemH ? hemH ? ferrochelatase N N N Present in ancestor "Low carbon, planktonic" CBT743 RA NC_008542 "838,824" A?G 100% T154A (ACC?GCC)  hemH ? hemH ? ferrochelatase N N N Present in ancestor "Low carbon, planktonic" CBT744 RA NC_008542 "838,824" A?G 100% T154A (ACC?GCC)  hemH ? hemH ? ferrochelatase N N N Present in ancestor "Low carbon, planktonic" CBT745 RA NC_008542 "838,824" A?G 100% T154A (ACC?GCC)  hemH ? hemH ? ferrochelatase N N N Present in ancestor "Low carbon, planktonic" CBT746 RA NC_008542 "838,824" A?G 100% T154A (ACC?GCC)  hemH ? hemH ? ferrochelatase N N N Present in ancestor "Low carbon, planktonic" CBT747 RA NC_008542 "838,824" A?G 100% T154A (ACC?GCC)  hemH ? hemH ? ferrochelatase N N N Present in ancestor "Low carbon, planktonic" CBT742 JC NC_008542 "841,065" #NAME? 8.60% coding (103/444 nt) Bcen2424_0751 ? Bcen2424_0751 ? hypothetical protein N N N Only at ends of reads "High carbon, planktonic" CBT738 JC NC_008542 "922,314" ?66 bp 9.80% intergenic (+139/+6) Bcen2424_0821 ? / ? Bcen2424_0822 None fumarylacetoacetase/major facilitator transporter N N N "Known error, Intergenic and not upstream" "High carbon, large bead" CBT722 JC NC_008542 "922,314" ?66 bp 7.60% intergenic (+139/+6) Bcen2424_0821 ? / ? Bcen2424_0822 None fumarylacetoacetase/major facilitator transporter N N N "Known error, Intergenic and not upstream" "High carbon, small bead" CBT725 JC NC_008542 "922,314" ?66 bp 10.80% intergenic (+139/+6) Bcen2424_0821 ? / ? Bcen2424_0822 None fumarylacetoacetase/major facilitator transporter N N N "Known error, Intergenic and not upstream" "High carbon, small bead" CBT726 JC NC_008542 "922,314" ?66 bp 13.00% intergenic (+139/+6) Bcen2424_0821 ? / ? Bcen2424_0822 None fumarylacetoacetase/major facilitator transporter N N N "Known error, Intergenic and not upstream" "High carbon, planktonic" CBT740 JC NC_008542 "922,314" ?66 bp 10.80% intergenic (+139/+6) Bcen2424_0821 ? / ? Bcen2424_0822 None fumarylacetoacetase/major facilitator transporter N N N "Known error, Intergenic and not upstream" "High carbon, planktonic" CBT741 JC NC_008542 "922,314" ?66 bp 8.30% intergenic (+139/+6) Bcen2424_0821 ? / ? Bcen2424_0822 None fumarylacetoacetase/major facilitator transporter N N N "Known error, Intergenic and not upstream" "Low carbon, planktonic" CBT742 JC NC_008542 "922,314" ?66 bp 19.30% intergenic (+139/+6) Bcen2424_0821 ? / ? Bcen2424_0822 None fumarylacetoacetase/major facilitator transporter N N N "Known error, Intergenic and not upstream" "Low carbon, planktonic" CBT745 JC NC_008542 "922,314" ?66 bp 9.00% intergenic (+139/+6) Bcen2424_0821 ? / ? Bcen2424_0822 None fumarylacetoacetase/major facilitator transporter N N N "Known error, Intergenic and not upstream" "Low carbon, planktonic" CBT747 JC NC_008542 "922,314" ?66 bp 7.60% intergenic (+139/+6) Bcen2424_0821 ? / ? Bcen2424_0822 None fumarylacetoacetase/major facilitator transporter N N N "Known error, Intergenic and not upstream" "High carbon, large bead" CBT720 JC NC_008542 "922,320" ?60 bp 20.20% intergenic (+145/+6) Bcen2424_0821 ? / ? Bcen2424_0822 None fumarylacetoacetase/major facilitator transporter N N N "Known error, Intergenic and not upstream" "High carbon, large bead" CBT723 JC NC_008542 "922,320" ?60 bp 21.80% intergenic (+145/+6) Bcen2424_0821 ? / ? Bcen2424_0822 None fumarylacetoacetase/major facilitator transporter N N N "Known error, Intergenic and not upstream" "Low carbon, large bead" CBT730 JC NC_008542 "922,320" ?60 bp 14.40% intergenic (+145/+6) Bcen2424_0821 ? / ? Bcen2424_0822 None fumarylacetoacetase/major facilitator transporter N N N "Known error, Intergenic and not upstream" "Low carbon, large bead" CBT735 JC NC_008542 "922,320" ?60 bp 19.80% intergenic (+145/+6) Bcen2424_0821 ? / ? Bcen2424_0822 None fumarylacetoacetase/major facilitator transporter N N N "Known error, Intergenic and not upstream" "Low carbon, planktonic" CBT743 JC NC_008542 "922,320" ?60 bp 21.60% intergenic (+145/+6) Bcen2424_0821 ? / ? Bcen2424_0822 None fumarylacetoacetase/major facilitator transporter N N N "Known error, Intergenic and not upstream" "Low carbon, planktonic" CBT742 RA NC_008542 "927,484" A?T 6.00% L160H (CTC?CAC)  Bcen2424_0826 ? Bcen2424_0826 ? LysR family transcriptional regulator Y Y N "Low carbon, planktonic" CBT747 RA NC_008542 "927,760" C?T 44.20% G68D (GGT?GAT)  Bcen2424_0826 ? Bcen2424_0826 ? LysR family transcriptional regulator Y Y N "Low carbon, large bead" CBT734 RA NC_008542 "934,307" C?G 16.90% L234V (CTG?GTG)  Bcen2424_0832 ? Bcen2424_0832 ? "2Fe?2S ferredoxin, iron?sulfur binding site" Y Y N "High carbon, planktonic" CBT736 RA NC_008542 "957,719" A?C 5.20% G130G (GGA?GGC)  Bcen2424_0852 ? Bcen2424_0852 ? hypothetical protein N N Y "Synonymous, reads appear misaligned" "High carbon, small bead" CBT724 RA NC_008542 "958,142" A?G 7.50% A271A (GCA?GCG)  Bcen2424_0852 ? Bcen2424_0852 ? hypothetical protein N N Y "Synonymous, reads appear misaligned" "High carbon, planktonic" CBT741 RA NC_008542 "958,160" A?G 5.30% V277V (GTA?GTG)  Bcen2424_0852 ? Bcen2424_0852 ? hypothetical protein N N Y "Synonymous, reads appear misaligned" "High carbon, planktonic" CBT741 RA NC_008542 "958,162" A?G 5.40% N278S (AAT?AGT)  Bcen2424_0852 ? Bcen2424_0852 ? hypothetical protein N N N Low quality/misaligned "Low carbon, large bead" CBT732 RA NC_008542 "959,484" ?1 bp 5.30% coding (2155/2487 nt) Bcen2424_0852 ? Bcen2424_0852 ? hypothetical protein Y Y N Should be 5bp deletion "Low carbon, large bead" CBT732 RA NC_008542 "959,485" ?1 bp 5.30% coding (2156/2487 nt) Bcen2424_0852 ? Bcen2424_0852 ? hypothetical protein N N N Part of another mutation Should be 5bp deletion "Low carbon, planktonic" CBT747 RA NC_008542 "967,572" C?T 19.20% A70A (GCC?GCT)  Bcen2424_0863 ? Bcen2424_0863 ? hypothetical protein Y N Y Synonymous "High carbon, small bead" CBT729 RA NC_008542 "984,919" C?G 30.70% H209D (CAC?GAC)  Bcen2424_0880 ? Bcen2424_0880 ? "GDP?mannose 4,6?dehydratase" Y Y N "High carbon, small bead" CBT725 JC NC_008542 "994,612" ?63 bp 33.30% coding (505?567/1017 nt) Bcen2424_0886 ? Bcen2424_0886 ? glycosyl transferase family protein Y Y N "High carbon, small bead" CBT727 JC NC_008542 "994,612" ?63 bp 20.80% coding (505?567/1017 nt) Bcen2424_0886 ? Bcen2424_0886 ? glycosyl transferase family protein Y Y N "Low carbon, large bead" CBT731 JC NC_008542 "995,461" #NAME? 9.80% coding (325/1884 nt) Bcen2424_0887 ? Bcen2424_0887 ? polysaccharide biosynthesis protein CapD N N N Only at ends of reads "Low carbon, planktonic" CBT742 RA NC_008542 "1,080,279" T?G 5.20% intergenic (+57/+41) Bcen2424_0971 ? / ? Bcen2424_0972 None ABC transporter?like protein/hypothetical protein N N N "Intergenic and not upstream, reads appear misaligned" "High carbon, small bead" CBT727 RA NC_008542 "1,085,147" G?A 7.80% V651V (GTG?GTA)  Bcen2424_0975 ? Bcen2424_0975 ? cell division protein FtsK/SpoIIIE Y N Y Synonymous "Low carbon, planktonic" CBT747 RA NC_008542 "1,104,964" ?1 bp 5.50% coding (214/984 nt) Bcen2424_0998 ? Bcen2424_0998 ? hypothetical protein Y Y N Should be 2 bp deletion "Low carbon, planktonic" CBT747 RA NC_008542 "1,104,965" ?1 bp 5.40% coding (215/984 nt) Bcen2424_0998 ? Bcen2424_0998 ? hypothetical protein N N N Part of another mutation Should be 2 bp deletion "Low carbon, planktonic" CBT743 RA NC_008542 "1,105,621" C?T 5.80% R291C (CGC?TGC)  Bcen2424_0998 ? Bcen2424_0998 ? hypothetical protein Y Y N "Low carbon, planktonic" CBT747 RA NC_008542 "1,105,714" C?G 5.90% Q322E (CAA?GAA)  Bcen2424_0998 ? Bcen2424_0998 ? hypothetical protein Y Y N Should be a 2 bp deletion "High carbon, large bead" CBT723 RA NC_008542 "1,210,512" T?C 5.20% intergenic (?2/+71) Bcen2424_R0031 ? / ? Bcen2424_R0032 Bcen2424_R0031 ? tRNA?Asn/tRNA?Asn N N N Reads appear to be misaligned "High carbon, planktonic" CBT739 RA NC_008542 "1,210,512" T?C 6.10% intergenic (?2/+71) Bcen2424_R0031 ? / ? Bcen2424_R0032 Bcen2424_R0031 ? tRNA?Asn/tRNA?Asn N N N Only at ends of reads "High carbon, planktonic" CBT737 JC NC_008542 "1,212,888" ?3 bp 6.00% coding (227?229/663 nt) Bcen2424_1101 ? Bcen2424_1101 ? hypothetical protein Y Y N "High carbon, small bead" CBT729 RA NC_008542 "1,221,663" G?A 6.00% T1015M (ACG?ATG)  Bcen2424_1110 ? Bcen2424_1110 ? ribonuclease Y Y N "High carbon, planktonic" CBT740 RA NC_008542 "1,233,916" A?G 5.30% K176R (AAG?AGG)  Bcen2424_1122 ? Bcen2424_1122 ? malonyl CoA?acyl carrier protein transacylase Y Y N "High carbon, planktonic" CBT739 RA NC_008542 "1,245,450" ?1 bp 8.90% coding (822/1230 nt) Bcen2424_1134 ? Bcen2424_1134 ? ribonuclease III Y Y N "High carbon, small bead" CBT726 RA NC_008542 "1,293,929" T?C 5.10% intergenic (+99/+638) Bcen2424_1178 ? / ? Bcen2424_1179 None "AraC family transcriptional regulator/transposase, mutator type" N N N Intergenic and not upstream "High carbon, large bead" CBT720 RA NC_008542 "1,294,084" C?G 7.40% intergenic (+254/+483) Bcen2424_1178 ? / ? Bcen2424_1179 None "AraC family transcriptional regulator/transposase, mutator type" N N N "Intergenic and not upstream, misaligned reads" "High carbon, large bead" CBT721 RA NC_008542 "1,294,084" C?G 5.60% intergenic (+254/+483) Bcen2424_1178 ? / ? Bcen2424_1179 None "AraC family transcriptional regulator/transposase, mutator type" N N N Intergenic and not upstream "High carbon, small bead" CBT726 RA NC_008542 "1,294,084" C?G 5.80% intergenic (+254/+483) Bcen2424_1178 ? / ? Bcen2424_1179 None "AraC family transcriptional regulator/transposase, mutator type" N N N Intergenic and not upstream "High carbon, small bead" CBT728 RA NC_008542 "1,294,084" C?G 5.40% intergenic (+254/+483) Bcen2424_1178 ? / ? Bcen2424_1179 None "AraC family transcriptional regulator/transposase, mutator type" N N N "Intergenic and not upstream, reads appear misaligned" "Low carbon, large bead" CBT732 RA NC_008542 "1,294,084" C?G 6.40% intergenic (+254/+483) Bcen2424_1178 ? / ? Bcen2424_1179 None "AraC family transcriptional regulator/transposase, mutator type" N N N "Intergenic and not upstream, reads appear misaligned" "Low carbon, planktonic" CBT743 RA NC_008542 "1,294,084" C?G 5.60% intergenic (+254/+483) Bcen2424_1178 ? / ? Bcen2424_1179 None "AraC family transcriptional regulator/transposase, mutator type" N N N "Intergenic and not upstream, reads appear misaligned" "Low carbon, planktonic" CBT745 RA NC_008542 "1,294,084" C?G 5.60% intergenic (+254/+483) Bcen2424_1178 ? / ? Bcen2424_1179 None "AraC family transcriptional regulator/transposase, mutator type" N N N "Intergenic and not upstream, reads appear misaligned" "High carbon, large bead" CBT720 RA NC_008542 "1,294,434" G?C 6.60% intergenic (+604/+133) Bcen2424_1178 ? / ? Bcen2424_1179 None "AraC family transcriptional regulator/transposase, mutator type" N N N "Intergenic and not upstream, misaligned reads" "High carbon, large bead" CBT721 RA NC_008542 "1,294,434" G?C 6.80% intergenic (+604/+133) Bcen2424_1178 ? / ? Bcen2424_1179 None "AraC family transcriptional regulator/transposase, mutator type" N N N Intergenic and not upstream "High carbon, small bead" CBT726 RA NC_008542 "1,294,434" G?C 7.90% intergenic (+604/+133) Bcen2424_1178 ? / ? Bcen2424_1179 None "AraC family transcriptional regulator/transposase, mutator type" N N N Intergenic and not upstream "Low carbon, large bead" CBT732 RA NC_008542 "1,294,434" G?C 6.60% intergenic (+604/+133) Bcen2424_1178 ? / ? Bcen2424_1179 None "AraC family transcriptional regulator/transposase, mutator type" N N N Intergenic and not upstream "Low carbon, planktonic" CBT743 RA NC_008542 "1,294,434" G?C 5.40% intergenic (+604/+133) Bcen2424_1178 ? / ? Bcen2424_1179 None "AraC family transcriptional regulator/transposase, mutator type" N N N "Intergenic and not upstream, reads appear misaligned" "High carbon, large bead" CBT720 RA NC_008542 "1,294,435" C?G 6.60% intergenic (+605/+132) Bcen2424_1178 ? / ? Bcen2424_1179 None "AraC family transcriptional regulator/transposase, mutator type" N N N "Intergenic and not upstream, misaligned reads" "High carbon, large bead" CBT721 RA NC_008542 "1,294,435" C?G 6.80% intergenic (+605/+132) Bcen2424_1178 ? / ? Bcen2424_1179 None "AraC family transcriptional regulator/transposase, mutator type" N N N Intergenic and not upstream "High carbon, small bead" CBT726 RA NC_008542 "1,294,435" C?G 7.90% intergenic (+605/+132) Bcen2424_1178 ? / ? Bcen2424_1179 None "AraC family transcriptional regulator/transposase, mutator type" N N N Intergenic and not upstream "Low carbon, large bead" CBT732 RA NC_008542 "1,294,435" C?G 6.80% intergenic (+605/+132) Bcen2424_1178 ? / ? Bcen2424_1179 None "AraC family transcriptional regulator/transposase, mutator type" N N N Intergenic and not upstream "Low carbon, planktonic" CBT743 RA NC_008542 "1,294,435" C?G 5.50% intergenic (+605/+132) Bcen2424_1178 ? / ? Bcen2424_1179 None "AraC family transcriptional regulator/transposase, mutator type" N N N "Intergenic and not upstream, reads appear misaligned" "Low carbon, large bead" CBT732 RA NC_008542 "1,294,507" T?C 5.20% intergenic (+677/+60) Bcen2424_1178 ? / ? Bcen2424_1179 None "AraC family transcriptional regulator/transposase, mutator type" N N N Intergenic and not upstream "Low carbon, large bead" CBT732 RA NC_008542 "1,294,508" T?G 5.20% intergenic (+678/+59) Bcen2424_1178 ? / ? Bcen2424_1179 None "AraC family transcriptional regulator/transposase, mutator type" N N N Intergenic and not upstream "Low carbon, large bead" CBT732 RA NC_008542 "1,294,510" T?G 5.30% intergenic (+680/+57) Bcen2424_1178 ? / ? Bcen2424_1179 None "AraC family transcriptional regulator/transposase, mutator type" N N N Intergenic and not upstream "Low carbon, large bead" CBT732 RA NC_008542 "1,294,511" T?G 5.20% intergenic (+681/+56) Bcen2424_1178 ? / ? Bcen2424_1179 None "AraC family transcriptional regulator/transposase, mutator type" N N N Intergenic and not upstream "Low carbon, large bead" CBT732 RA NC_008542 "1,294,512" G?C 5.20% intergenic (+682/+55) Bcen2424_1178 ? / ? Bcen2424_1179 None "AraC family transcriptional regulator/transposase, mutator type" N N N Intergenic and not upstream "Low carbon, large bead" CBT732 RA NC_008542 "1,294,515" G?C 5.00% intergenic (+685/+52) Bcen2424_1178 ? / ? Bcen2424_1179 None "AraC family transcriptional regulator/transposase, mutator type" N N N Intergenic and not upstream "Low carbon, large bead" CBT732 RA NC_008542 "1,295,942" G?A 6.60% intergenic (?125/?250) Bcen2424_1179 ? / ? argD None "transposase, mutator type/bifunctional N?succinyldiaminopimelate?aminotransferase/acetylornithine transaminase protein" N N N Only at ends of reads "High carbon, small bead" CBT727 RA NC_008542 "1,295,942" G?A 8.10% intergenic (?125/?250) Bcen2424_1179 ? / ? argD Bcen2424_1179 ? "transposase, mutator type/bifunctional N?succinyldiaminopimelate?aminotransferase/acetylornithine transaminase protein" Y Y N "High carbon, small bead" CBT726 RA NC_008542 "1,316,547" A?G 14.90% V445A (GTG?GCG)  Bcen2424_1196 ? Bcen2424_1196 ? acriflavin resistance protein Y Y N "Low carbon, planktonic" CBT747 RA NC_008542 "1,322,994" A?C 23.60% Y160D (TAC?GAC)  Bcen2424_1199 ? Bcen2424_1199 ? IclR family transcriptional regulator y Y N "High carbon, large bead" CBT720 RA NC_008542 "1,324,211" C?A 66.30% P638P (CCG?CCT)  Bcen2424_1201 ? Bcen2424_1201 ? phosphatase?like protein Y N Y Synonymous "Low carbon, large bead" CBT732 RA NC_008542 "1,346,933" ?1 bp 5.80% coding (1000/2319 nt) Bcen2424_1216 ? Bcen2424_1216 ? exodeoxyribonuclease V subunit alpha Y Y N Should be 2 bp deletion "Low carbon, large bead" CBT732 RA NC_008542 "1,346,934" ?1 bp 5.80% coding (1001/2319 nt) Bcen2424_1216 ? Bcen2424_1216 ? exodeoxyribonuclease V subunit alpha N N N Part of another mutation Should be 2 bp deletion "High carbon, small bead" CBT724 RA NC_008542 "1,353,434" G?A 13.50% G335G (GGC?GGT)  Bcen2424_1223 ? Bcen2424_1223 ? thiamine biosynthesis protein ThiC Y N Y Synonymous "High carbon, large bead" CBT721 RA NC_008542 "1,353,533" C?G 5.00% T302T (ACG?ACC)  Bcen2424_1223 ? Bcen2424_1223 ? thiamine biosynthesis protein ThiC N N Y "Synonymous, reads appear misaligned" "High carbon, planktonic" CBT739 RA NC_008542 "1,373,059" C?T 7.10% intergenic (+179/?236) Bcen2424_1242 ? / ? Bcen2424_1243 None hypothetical protein/3?methyl?2?oxobutanoate dehydrogenase Y N N Intergenic and not upstream "High carbon, planktonic" CBT739 RA NC_008542 "1,378,326" G?A 6.00% intergenic (+48/?227) Bcen2424_1246 ? / ? Bcen2424_1247 None dihydrolipoamide dehydrogenase/hypothetical protein N N N "Intergenic and not upstream, Only at ends of reads" "High carbon, large bead" CBT722 RA NC_008542 "1,391,814" ?1 bp 11.10% coding (814/1152 nt) Bcen2424_1258 ? Bcen2424_1258 ? hypothetical protein N N N Reads appear to be misaligned "Low carbon, large bead" CBT731 JC NC_008542 "1,406,289" #NAME? 7.60% coding (28/522 nt) Bcen2424_1276 ? Bcen2424_1276 ? hypothetical protein N N N Only at ends of reads "High carbon, large bead" CBT723 JC NC_008542 "1,420,725" #NAME? 8.80% coding (51/3255 nt) carB ? carB ? carbamoyl phosphate synthase large subunit N N N Only at ends of reads "High carbon, planktonic" CBT739 RA NC_008542 "1,448,461" C?G 7.00% V27L (GTG?CTG)  Bcen2424_1316 ? Bcen2424_1316 ? AMP?dependent synthetase and ligase N N N "High carbon, planktonic" CBT739 RA NC_008542 "1,487,681" ?1 bp 5.60% coding (654/786 nt) Bcen2424_1348 ? Bcen2424_1348 ? ABC transporter?like protein Y Y N Should be 3 bp deletion "High carbon, planktonic" CBT739 RA NC_008542 "1,487,682" ?1 bp 5.60% coding (655/786 nt) Bcen2424_1348 ? Bcen2424_1348 ? ABC transporter?like protein N N N Part of another mutation Should be 3 bp deletion "High carbon, planktonic" CBT739 RA NC_008542 "1,487,683" ?1 bp 5.60% coding (656/786 nt) Bcen2424_1348 ? Bcen2424_1348 ? ABC transporter?like protein N N N Part of another mutation Should be 3 bp deletion "High carbon, small bead" CBT724 RA NC_008542 "1,511,811" G?A 5.20% intergenic (?127/?342) Bcen2424_1373 ? / ? Bcen2424_1374 Bcen2424_1373 ? phospholipid/glycerol acyltransferase/CDP?alcohol phosphatidyltransferase Y Y N "High carbon, planktonic" CBT739 RA NC_008542 "1,514,201" C?T 6.20% P462S (CCG?TCG)  Bcen2424_1375 ? Bcen2424_1375 ? alpha/beta hydrolase fold protein Y Y N "High carbon, large bead" CBT718 RA NC_008542 "1,557,830" C?T 9.80% L70L (CTG?TTG)  Bcen2424_1411 ? Bcen2424_1411 ? hypothetical protein Y N Y Synonymous "High carbon, large bead" CBT720 JC NC_008542 "1,585,907" ?9 bp 7.50% coding (793?801/1362 nt) Bcen2424_1437 ? Bcen2424_1437 ? peptidoglycan?binding LysM Y Y N "High carbon, planktonic" CBT739 RA NC_008542 "1,586,062" C?G 6.30% F316L (TTC?TTG)  Bcen2424_1437 ? Bcen2424_1437 ? peptidoglycan?binding LysM Y Y N "High carbon, small bead" CBT726 RA NC_008542 "1,588,216" C?T 80.90% S577L (TCG?TTG)  Bcen2424_1438 ? Bcen2424_1438 ? rowS Y Y N "High carbon, small bead" CBT728 RA NC_008542 "1,588,216" C?T 100% S577L (TCG?TTG)  Bcen2424_1438 ? Bcen2424_1438 ? rowS Y Y N "Low carbon, planktonic" CBT747 JC NC_008542 "1,605,045" #NAME? 8.50% coding (3/1518 nt) Bcen2424_1449 ? Bcen2424_1449 ? RND efflux system outer membrane lipoprotein N N N Only at ends of reads "Low carbon, large bead" CBT731 RA NC_008542 "1,617,348" ?1 bp 5.10% coding (158/1674 nt) Bcen2424_1461 ? Bcen2424_1461 ? electron?transferring?flavoprotein dehydrogenase Y Y N "Low carbon, planktonic" CBT742 JC NC_008542 "1,681,057" #NAME? 19.70% coding (38/906 nt) Bcen2424_1520 ? Bcen2424_1520 ? Flp pilus assembly CpaB N N N Only at ends of reads "Low carbon, planktonic" CBT743 RA NC_008542 "1,682,096" C?T 59.60% A50V (GCG?GTG)  Bcen2424_1521 ? Bcen2424_1521 ? type II and III secretion system protein Y Y N "Low carbon, planktonic" CBT747 RA NC_008542 "1,685,680" C?T 12.00% Q362* (CAG?TAG)  Bcen2424_1523 ? Bcen2424_1523 ? type II secretion system protein E Y Y N "Low carbon, planktonic" CBT744 RA NC_008542 "1,687,645" T?G 67.30% L240R (CTG?CGG)  Bcen2424_1525 ? Bcen2424_1525 ? type II secretion system protein Y Y N "Low carbon, planktonic" CBT747 RA NC_008542 "1,687,843" C?G 15.00% T306R (ACG?AGG)  Bcen2424_1525 ? Bcen2424_1525 ? type II secretion system protein Y Y N "High carbon, small bead" CBT727 RA NC_008542 "1,739,962" C?T 5.40% S80S (AGC?AGT)  Bcen2424_1576 ? Bcen2424_1576 ? GCN5?like N?acetyltransferase Y N Y Synonymous "High carbon, large bead" CBT723 RA NC_008542 "1,741,238" C?T 6.00% F47F (TTC?TTT)  Bcen2424_1578 ? Bcen2424_1578 ? hypothetical protein Y N Y Synonymous "High carbon, planktonic" CBT739 RA NC_008542 "1,742,820" ?1 bp 5.20% coding (186/744 nt) Bcen2424_1579 ? Bcen2424_1579 ? hypothetical protein Y Y N Should be 2 bp deletion "High carbon, planktonic" CBT739 RA NC_008542 "1,742,821" ?1 bp 5.20% coding (185/744 nt) Bcen2424_1579 ? Bcen2424_1579 ? hypothetical protein N N N Part of another mutation Should be 2 bp deletion "Low carbon, large bead" CBT735 JC NC_008542 "1,789,041" #NAME? 7.00% coding (1065/3141 nt) Bcen2424_1623 ? Bcen2424_1623 ? multidrug efflux protein N N N Only at ends of reads "Low carbon, planktonic" CBT746 JC NC_008542 "1,789,201" #NAME? 12.70% coding (1225/3141 nt) Bcen2424_1623 ? Bcen2424_1623 ? multidrug efflux protein N N N Only at ends of reads "High carbon, large bead" CBT720 RA NC_008542 "1,793,600" C?G 26.40% N56K (AAC?AAG)  Bcen2424_1626 ? Bcen2424_1626 ? fimbrial protein Y Y N "High carbon, large bead" CBT722 RA NC_008542 "1,793,600" C?G 6.50% N56K (AAC?AAG)  Bcen2424_1626 ? Bcen2424_1626 ? fimbrial protein Y Y N "High carbon, small bead" CBT724 RA NC_008542 "1,793,600" C?G 15.00% N56K (AAC?AAG)  Bcen2424_1626 ? Bcen2424_1626 ? fimbrial protein Y Y N "High carbon, small bead" CBT726 RA NC_008542 "1,793,610" C?A 32.70% Q60K (CAA?AAA)  Bcen2424_1626 ? Bcen2424_1626 ? fimbrial protein Y Y N "High carbon, small bead" CBT729 RA NC_008542 "1,793,665" A?T 21.10% D78V (GAC?GTC)  Bcen2424_1626 ? Bcen2424_1626 ? fimbrial protein Y Y N "High carbon, large bead" CBT723 RA NC_008542 "1,793,725" C?G 21.10% P98R (CCG?CGG)  Bcen2424_1626 ? Bcen2424_1626 ? fimbrial protein Y Y N "High carbon, small bead" CBT727 RA NC_008542 "1,793,799" G?A 9.00% D123N (GAC?AAC) ‡ Bcen2424_1626 ? Bcen2424_1626 ? fimbrial protein Y Y N Occur on different backgrounds "High carbon, small bead" CBT727 RA NC_008542 "1,793,800" A?G 22.50% D123G (GAC?GGC) ‡ Bcen2424_1626 ? Bcen2424_1626 ? fimbrial protein Y Y N "Occur on different backgrounds, for some reason breseq isn't calling a C to A mutation a 1793801 that always co-occurs with this one. Makes the amino acid glycine" "High carbon, large bead" CBT722 RA NC_008542 "1,793,942" G?T 6.20% Q170H (CAG?CAT)  Bcen2424_1626 ? Bcen2424_1626 ? fimbrial protein Y Y N "Low carbon, planktonic" CBT747 RA NC_008542 "1,801,296" A?G 13.10% T5A (ACC?GCC)  Bcen2424_1635 ? Bcen2424_1635 ? ABC transporter?like protein Y Y N "High carbon, planktonic" CBT741 RA NC_008542 "1,803,278" G?T 14.50% V384L (GTG?TTG)  Bcen2424_1636 ? Bcen2424_1636 ? iron?hydroxamate transporter permease subunit Y Y N "High carbon, planktonic" CBT741 RA NC_008542 "1,804,603" G?A 6.60% A130T (GCG?ACG)  Bcen2424_1637 ? Bcen2424_1637 ? ferric iron reductase Y Y N "High carbon, large bead" CBT721 RA NC_008542 "1,809,016" G?A 6.00% V272I (GTC?ATC)  Bcen2424_1640 ? Bcen2424_1640 ? amino acid adenylation domain?containing protein Y Y N "High carbon, small bead" CBT727 RA NC_008542 "1,821,375" G?A 7.50% V1156V (GTG?GTA)  Bcen2424_1641 ? Bcen2424_1641 ? amino acid adenylation domain?containing protein Y N Y Synonymous "High carbon, large bead" CBT720 RA NC_008542 "1,824,131" C?G 67.20% S61W (TCG?TGG)  Bcen2424_1643 ? Bcen2424_1643 ? lysine/ornithine N?monooxygenase Y Y N "High carbon, large bead" CBT723 RA NC_008542 "1,824,176" A?C 12.40% Y76S (TAC?TCC)  Bcen2424_1643 ? Bcen2424_1643 ? lysine/ornithine N?monooxygenase Y Y N "High carbon, planktonic" CBT737 RA NC_008542 "1,824,179" C?T 8.00% T77M (ACG?ATG)  Bcen2424_1643 ? Bcen2424_1643 ? lysine/ornithine N?monooxygenase Y Y N "Not on same background as R101S, though not much evidence" "High carbon, small bead" CBT726 RA NC_008542 "1,824,250" C?T 20.00% R101C (CGC?TGC)  Bcen2424_1643 ? Bcen2424_1643 ? lysine/ornithine N?monooxygenase Y Y N "High carbon, planktonic" CBT737 RA NC_008542 "1,824,250" C?A 9.40% R101S (CGC?AGC)  Bcen2424_1643 ? Bcen2424_1643 ? lysine/ornithine N?monooxygenase Y Y N "Not on same background as T77M, though not much evidence" "High carbon, planktonic" CBT737 RA NC_008542 "1,824,419" C?T 14.30% T157M (ACG?ATG)  Bcen2424_1643 ? Bcen2424_1643 ? lysine/ornithine N?monooxygenase Y Y N "High carbon, planktonic" CBT739 RA NC_008542 "1,824,419" C?A 35.30% T157K (ACG?AAG)  Bcen2424_1643 ? Bcen2424_1643 ? lysine/ornithine N?monooxygenase Y Y N "High carbon, planktonic" CBT741 RA NC_008542 "1,824,419" ?1 bp 69.50% coding (470/1377 nt) Bcen2424_1643 ? Bcen2424_1643 ? lysine/ornithine N?monooxygenase Y Y N Should be 2 bp deletion "High carbon, planktonic" CBT741 RA NC_008542 "1,824,420" ?1 bp 69.50% coding (471/1377 nt) Bcen2424_1643 ? Bcen2424_1643 ? lysine/ornithine N?monooxygenase N N N Part of another mutation Should be 2 bp deletion "High carbon, planktonic" CBT738 RA NC_008542 "1,824,508" T?C 43.40% S187P (TCG?CCG)  Bcen2424_1643 ? Bcen2424_1643 ? lysine/ornithine N?monooxygenase Y Y N "High carbon, planktonic" CBT737 RA NC_008542 "1,824,593" C?A 14.70% A215E (GCG?GAG)  Bcen2424_1643 ? Bcen2424_1643 ? lysine/ornithine N?monooxygenase Y Y N "Not on same background as D245Y, though not much evidence" "High carbon, planktonic" CBT741 RA NC_008542 "1,824,647" T?G 8.30% L233R (CTC?CGC)  Bcen2424_1643 ? Bcen2424_1643 ? lysine/ornithine N?monooxygenase Y Y N "High carbon, planktonic" CBT737 RA NC_008542 "1,824,682" G?T 9.80% D245Y (GAC?TAC)  Bcen2424_1643 ? Bcen2424_1643 ? lysine/ornithine N?monooxygenase Y Y N "Not on same background as A215E, though not much evidence" "High carbon, small bead" CBT726 JC NC_008542 "1,824,749" #NAME? 17.00% coding (800/1377 nt) Bcen2424_1643 ? Bcen2424_1643 ? lysine/ornithine N?monooxygenase Y Y N "High carbon, planktonic" CBT739 JC NC_008542 "1,824,756" #NAME? 22.70% coding (807/1377 nt) Bcen2424_1643 ? Bcen2424_1643 ? lysine/ornithine N?monooxygenase Y Y N "High carbon, planktonic" CBT739 RA NC_008542 "1,824,764" T?C 5.10% L272P (CTG?CCG)  Bcen2424_1643 ? Bcen2424_1643 ? lysine/ornithine N?monooxygenase Y Y N "High carbon, planktonic" CBT741 JC NC_008542 "1,825,126" ?74 bp 13.20% coding (1177?1250/1377 nt) Bcen2424_1643 ? Bcen2424_1643 ? lysine/ornithine N?monooxygenase Y Y N "High carbon, planktonic" CBT739 RA NC_008542 "1,846,036" G?T 6.70% intergenic (+18/?51) Bcen2424_1658 ? / ? Bcen2424_1659 Bcen2424_1659 ? magnesium chelatase/Mg?chelatase subunit ChlD?like protein Y Y N "Low carbon, large bead" CBT734 JC NC_008542 "1,889,554" #NAME? 8.10% coding (35/285 nt) Bcen2424_1703 ? Bcen2424_1703 ? hypothetical protein Y Y N "High carbon, small bead" CBT727 RA NC_008542 "1,897,479" C?G 5.30% G219A (GGT?GCT)  Bcen2424_1706 ? Bcen2424_1706 ? hydrophobe/amphiphile efflux?1 (HAE1) family protein Y Y N "High carbon, planktonic" CBT739 RA NC_008542 "1,936,664" G?A 8.50% L318L (CTG?CTA)  Bcen2424_1741 ? Bcen2424_1741 ? RND efflux system outer membrane lipoprotein Y N Y Synonymous "Low carbon, planktonic" CBT746 RA NC_008542 "2,008,668" A?C 6.10% L8V (TTA?GTA)  hfq ? hfq ? RNA?binding protein Hfq Y Y N "Low carbon, large bead" CBT732 RA NC_008542 "2,029,039" ?1 bp 5.50% coding (1707/2364 nt) Bcen2424_1827 ? Bcen2424_1827 ? DNA polymerase III subunits gamma and tau Y Y N "Low carbon, large bead" CBT734 RA NC_008542 "2,035,755" G?T 9.60% E130D (GAG?GAT)  Bcen2424_1832 ? Bcen2424_1832 ? hypothetical protein Y Y N "High carbon, large bead" CBT718 RA NC_008542 "2,037,301" G?A 13.40% V178V (GTG?GTA)  Bcen2424_1834 ? Bcen2424_1834 ? glycosyltransferase Y N Y Synonymous "Low carbon, large bead" CBT730 RA NC_008542 "2,037,710" G?A 5.20% A315T (GCG?ACG)  Bcen2424_1834 ? Bcen2424_1834 ? glycosyltransferase N N N Only at ends of reads "High carbon, planktonic" CBT740 RA NC_008542 "2,067,313" C?G 28.00% Q218E (CAG?GAG)  Bcen2424_1861 ? Bcen2424_1861 ? putative formyltransferase Y Y N "High carbon, planktonic" CBT736 RA NC_008542 "2,118,868" T?A 100% L34Q (CTG?CAG)  Bcen2424_1910 ? Bcen2424_1910 ? intracellular septation protein A Y Y N "High carbon, planktonic" CBT738 RA NC_008542 "2,118,868" T?A 100% L34Q (CTG?CAG)  Bcen2424_1910 ? Bcen2424_1910 ? intracellular septation protein A Y Y N "Low carbon, large bead" CBT730 RA NC_008542 "2,127,388" G?C 5.10% G170R (GGG?CGG)  Bcen2424_1916 ? Bcen2424_1916 ? carbohydrate kinase Y Y N "High carbon, planktonic" CBT739 RA NC_008542 "2,194,120" G?A 5.70% A27T (GCC?ACC)  Bcen2424_1975 ? Bcen2424_1975 ? binding?protein?dependent transport systems inner membrane component Y Y N "Low carbon, planktonic" CBT743 RA NC_008542 "2,210,308" G?A 5.60% R126W (CGG?TGG)  Bcen2424_1993 ? Bcen2424_1993 ? hypothetical protein Y Y N "High carbon, small bead" CBT724 RA NC_008542 "2,215,316" C?T 5.70% intergenic (+138/+14) smpB ? / ? Bcen2424_2000 None SsrA?binding protein/hypothetical protein N N N "Intergenic and not upstream, reads appear misaligned" "High carbon, small bead" CBT728 RA NC_008542 "2,215,316" C?T 5.30% intergenic (+138/+14) smpB ? / ? Bcen2424_2000 None SsrA?binding protein/hypothetical protein N N N "Intergenic and not upstream, only at ends of reads" "Low carbon, planktonic" CBT744 RA NC_008542 "2,215,316" C?T 5.80% intergenic (+138/+14) smpB ? / ? Bcen2424_2000 None SsrA?binding protein/hypothetical protein N N N "Intergenic and not upstream, reads appear misaligned" "High carbon, planktonic" CBT740 RA NC_008542 "2,240,573" A?G 5.70% A125A (GCA?GCG)  Bcen2424_2022 ? Bcen2424_2022 ? pseudouridine synthase Rsu Y Y N "Low carbon, large bead" CBT734 JC NC_008542 "2,297,292" #NAME? 13.00% coding (1006/2007 nt) Bcen2424_2070 ? Bcen2424_2070 ? cytochrome?c oxidase N N N Only at ends of reads "Low carbon, planktonic" CBT746 RA NC_008542 "2,322,343" ?1 bp 5.30% coding (1162/1248 nt) Bcen2424_2089 ? Bcen2424_2089 ? hypothetical protein Y Y N "High carbon, small bead" CBT727 RA NC_008542 "2,348,871" G?A 6.50% G144S (GGC?AGC)  Bcen2424_2116 ? Bcen2424_2116 ? single?stranded?DNA?specific exonuclease RecJ Y Y N "Low carbon, large bead" CBT735 JC NC_008542 "2,371,958" #NAME? 9.70% coding (1553/2697 nt) aceE ? aceE ? pyruvate dehydrogenase subunit E1 N N N Only at ends of reads "High carbon, planktonic" CBT739 RA NC_008542 "2,418,897" G?A 8.10% A106V (GCC?GTC)  Bcen2424_2171 ? Bcen2424_2171 ? histidine utilization repressor Y Y N "High carbon, large bead" CBT721 JC NC_008542 "2,422,528" ?41 bp 6.60% coding (84?124/756 nt) Bcen2424_2174 ? Bcen2424_2174 ? 4'?phosphopantetheinyl transferase Y Y N "High carbon, small bead" CBT727 RA NC_008542 "2,427,606" C?T 9.70% G161D (GGC?GAC)  Bcen2424_2178 ? Bcen2424_2178 ? deoxyribodipyrimidine photo?lyase Y Y N "High carbon, large bead" CBT718 RA NC_008542 "2,447,720" G?A 100% intergenic (+133/?61) Bcen2424_2194 ? / ? Bcen2424_2195 Bcen2424_2195 ? tartrate/fumarate subfamily Fe?S type hydro?lyase alpha subunit/bacterioferritin Y Y N "High carbon, large bead" CBT721 RA NC_008542 "2,447,720" G?A 100% intergenic (+133/?61) Bcen2424_2194 ? / ? Bcen2424_2195 Bcen2424_2195 ? tartrate/fumarate subfamily Fe?S type hydro?lyase alpha subunit/bacterioferritin Y Y N "High carbon, large bead" CBT722 RA NC_008542 "2,447,720" G?A 86.30% intergenic (+133/?61) Bcen2424_2194 ? / ? Bcen2424_2195 Bcen2424_2195 ? tartrate/fumarate subfamily Fe?S type hydro?lyase alpha subunit/bacterioferritin Y Y N "High carbon, large bead" CBT723 RA NC_008542 "2,447,720" G?A 100% intergenic (+133/?61) Bcen2424_2194 ? / ? Bcen2424_2195 Bcen2424_2195 ? tartrate/fumarate subfamily Fe?S type hydro?lyase alpha subunit/bacterioferritin Y Y N "High carbon, small bead" CBT724 RA NC_008542 "2,447,720" G?A 73.20% intergenic (+133/?61) Bcen2424_2194 ? / ? Bcen2424_2195 Bcen2424_2195 ? tartrate/fumarate subfamily Fe?S type hydro?lyase alpha subunit/bacterioferritin Y Y N All 3 always occur on different backgrounds "High carbon, small bead" CBT726 RA NC_008542 "2,447,720" G?A 23.80% intergenic (+133/?61) Bcen2424_2194 ? / ? Bcen2424_2195 Bcen2424_2195 ? tartrate/fumarate subfamily Fe?S type hydro?lyase alpha subunit/bacterioferritin Y Y N Occur on different backgrounds "High carbon, small bead" CBT727 RA NC_008542 "2,447,720" G?A 16.20% intergenic (+133/?61) Bcen2424_2194 ? / ? Bcen2424_2195 Bcen2424_2195 ? tartrate/fumarate subfamily Fe?S type hydro?lyase alpha subunit/bacterioferritin Y Y N There's also a nearby mutation that breseq doesn't seem to be calling for some reason "High carbon, small bead" CBT728 RA NC_008542 "2,447,720" G?A 100% intergenic (+133/?61) Bcen2424_2194 ? / ? Bcen2424_2195 Bcen2424_2195 ? tartrate/fumarate subfamily Fe?S type hydro?lyase alpha subunit/bacterioferritin Y Y N "High carbon, small bead" CBT729 RA NC_008542 "2,447,720" G?A 100% intergenic (+133/?61) Bcen2424_2194 ? / ? Bcen2424_2195 Bcen2424_2195 ? tartrate/fumarate subfamily Fe?S type hydro?lyase alpha subunit/bacterioferritin Y Y N "High carbon, planktonic" CBT736 RA NC_008542 "2,447,720" G?A 100% intergenic (+133/?61) Bcen2424_2194 ? / ? Bcen2424_2195 Bcen2424_2195 ? tartrate/fumarate subfamily Fe?S type hydro?lyase alpha subunit/bacterioferritin Y Y N "High carbon, planktonic" CBT737 RA NC_008542 "2,447,720" G?A 100% intergenic (+133/?61) Bcen2424_2194 ? / ? Bcen2424_2195 Bcen2424_2195 ? tartrate/fumarate subfamily Fe?S type hydro?lyase alpha subunit/bacterioferritin Y Y N "High carbon, planktonic" CBT739 RA NC_008542 "2,447,720" G?A 100% intergenic (+133/?61) Bcen2424_2194 ? / ? Bcen2424_2195 Bcen2424_2195 ? tartrate/fumarate subfamily Fe?S type hydro?lyase alpha subunit/bacterioferritin Y Y N "High carbon, planktonic" CBT740 RA NC_008542 "2,447,720" G?A 100% intergenic (+133/?61) Bcen2424_2194 ? / ? Bcen2424_2195 Bcen2424_2195 ? tartrate/fumarate subfamily Fe?S type hydro?lyase alpha subunit/bacterioferritin Y Y N "High carbon, planktonic" CBT741 RA NC_008542 "2,447,720" G?A 100% intergenic (+133/?61) Bcen2424_2194 ? / ? Bcen2424_2195 Bcen2424_2195 ? tartrate/fumarate subfamily Fe?S type hydro?lyase alpha subunit/bacterioferritin Y Y N "Low carbon, planktonic" CBT742 RA NC_008542 "2,447,720" G?A 100% intergenic (+133/?61) Bcen2424_2194 ? / ? Bcen2424_2195 Bcen2424_2195 ? tartrate/fumarate subfamily Fe?S type hydro?lyase alpha subunit/bacterioferritin Y Y N "High carbon, small bead" CBT724 RA NC_008542 "2,447,743" C?A 21.00% intergenic (+156/?38) Bcen2424_2194 ? / ? Bcen2424_2195 Bcen2424_2195 ? tartrate/fumarate subfamily Fe?S type hydro?lyase alpha subunit/bacterioferritin Y Y N All 3 always occur on different backgrounds "High carbon, small bead" CBT724 RA NC_008542 "2,447,744" G?A 7.00% intergenic (+157/?37) Bcen2424_2194 ? / ? Bcen2424_2195 Bcen2424_2195 ? tartrate/fumarate subfamily Fe?S type hydro?lyase alpha subunit/bacterioferritin Y Y N All 3 always occur on different backgrounds CBT727 RA NC_008542 "2,447,744" G?A 49.30% intergenic (+157/?37) Bcen2424_2194 ? / ? Bcen2424_2195 Bcen2424_2195 ? tartrate/fumarate subfamily Fe?S type hydro?lyase alpha subunit/bacterioferritin Y Y "High carbon, small bead" CBT726 RA NC_008542 "2,447,762" C?A 11.30% intergenic (+175/?19) Bcen2424_2194 ? / ? Bcen2424_2195 Bcen2424_2195 ? tartrate/fumarate subfamily Fe?S type hydro?lyase alpha subunit/bacterioferritin Y Y N Occur on different backgrounds "High carbon, large bead" CBT723 RA NC_008542 "2,447,778" G?A 7.60% intergenic (+191/?3) Bcen2424_2194 ? / ? Bcen2424_2195 Bcen2424_2195 ? tartrate/fumarate subfamily Fe?S type hydro?lyase alpha subunit/bacterioferritin Y Y N Appears on backrgound w other bacterioferritin mutation "High carbon, planktonic" CBT738 RA NC_008542 "2,450,582" G?A 5.00% A21T (GCG?ACG)  Bcen2424_2199 ? Bcen2424_2199 ? MotA/TolQ/ExbB proton channel Y Y N "High carbon, small bead" CBT729 RA NC_008542 "2,506,672" C?A 6.90% G67C (GGC?TGC)  Bcen2424_2252 ? Bcen2424_2252 ? alcohol dehydrogenase Y Y N "High carbon, large bead" CBT720 RA NC_008542 "2,526,299" A?G 5.20% Q323R (CAG?CGG)  Bcen2424_2271 ? Bcen2424_2271 ? group 1 glycosyl transferase Y Y N "High carbon, planktonic" CBT739 RA NC_008542 "2,540,409" T?C 6.10% Q300R (CAG?CGG)  Bcen2424_2285 ? Bcen2424_2285 ? osmosensitive K+ channel signal transduction histidine kinase Y Y N "High carbon, planktonic" CBT740 MC JC NC_008542 "2,563,382" ?12 bp 100% coding (293?304/753 nt) Bcen2424_2308 ? Bcen2424_2308 ? glycosyl transferase family protein Y Y N "High carbon, small bead" CBT727 RA NC_008542 "2,582,657" C?T 6.00% P991S (CCG?TCG)  Bcen2424_2321 ? Bcen2424_2321 ? cell division protein FtsK/SpoIIIE Y Y N "High carbon, planktonic" CBT741 RA NC_008542 "2,599,929" ?1 bp 5.00% coding (1550/1551 nt) Bcen2424_2337 ? Bcen2424_2337 ? Na+/solute symporter Y Y N Should be 3 bp deletion "High carbon, planktonic" CBT741 RA NC_008542 "2,599,930" ?1 bp 5.00% coding (1549/1551 nt) Bcen2424_2337 ? Bcen2424_2337 ? Na+/solute symporter N N N Part of another mutation Should be 3 bp deletion "High carbon, planktonic" CBT741 RA NC_008542 "2,599,931" ?1 bp 5.00% coding (1548/1551 nt) Bcen2424_2337 ? Bcen2424_2337 ? Na+/solute symporter N N N Part of another mutation Should be 3 bp deletion "High carbon, planktonic" CBT738 RA NC_008542 "2,649,143" C?T 5.90% intergenic (+26/+35) Bcen2424_2384 ? / ? Bcen2424_2385 None hypothetical protein/short?chain dehydrogenase/reductase SDR Y N N Intergenic and not upstream "High carbon, planktonic" CBT740 RA NC_008542 "2,690,719" G?A 8.00% P300S (CCG?TCG)  hemC ? hemC ? porphobilinogen deaminase Y Y N "Low carbon, large bead" CBT730 JC NC_008542 "2,704,360" ?45 bp 5.60% coding (173?217/1092 nt) Bcen2424_2435 ? Bcen2424_2435 ? "cobyrinic acid a,c?diamide synthase" Y Y N "High carbon, planktonic" CBT738 JC NC_008542 "2,704,360" ?45 bp 8.70% coding (173?217/1092 nt) Bcen2424_2435 ? Bcen2424_2435 ? "cobyrinic acid a,c?diamide synthase" Y Y N "High carbon, small bead" CBT727 RA NC_008542 "2,726,200" C?T 6.00% intergenic (?31/+31) cobT ? / ? Bcen2424_2454 cobT ? nicotinate?nucleotide??dimethylbenzimidazole phosphoribosyltransferase/ABC transporter?like protein Y Y N "High carbon, planktonic" CBT740 RA NC_008542 "2,732,753" ?1 bp 5.10% coding (348/987 nt) Bcen2424_2461 ? Bcen2424_2461 ? LysR family transcriptional regulator Y Y N "High carbon, small bead" CBT727 RA NC_008542 "2,757,299" ?1 bp 5.30% coding (138/501 nt) Bcen2424_2485 ? Bcen2424_2485 ? hypothetical protein Y Y N "High carbon, small bead" CBT725 JC NC_008542 "2,762,657" #NAME? 5.20% coding (6/456 nt) Bcen2424_2492 ? Bcen2424_2492 ? putative acetyltransferase N N N Only at ends of reads "High carbon, planktonic" CBT739 RA NC_008542 "2,818,230" C?A 5.80% F104L (TTC?TTA)  Bcen2424_2542 ? Bcen2424_2542 ? chromate transporter Y Y N "High carbon, large bead" CBT723 RA NC_008542 "2,822,105" C?G 5.20% T77T (ACC?ACG)  Bcen2424_2545 ? Bcen2424_2545 ? tetraacyldisaccharide 4'?kinase N N Y "Synonymous, reads appear misaligned" "High carbon, small bead" CBT724 RA NC_008542 "2,830,038" A?T 5.00% V304E (GTG?GAG)  murB ? murB ? UDP?N?acetylenolpyruvoylglucosamine reductase N N N Reads appear to be misaligned "High carbon, small bead" CBT729 RA NC_008542 "2,830,038" A?T 7.00% V304E (GTG?GAG)  murB ? murB ? UDP?N?acetylenolpyruvoylglucosamine reductase N N N Only at ends of reads "Low carbon, large bead" CBT734 RA NC_008542 "2,830,038" A?T 5.30% V304E (GTG?GAG)  murB ? murB ? UDP?N?acetylenolpyruvoylglucosamine reductase N N N Only at ends of reads "Low carbon, large bead" CBT735 RA NC_008542 "2,830,038" A?T 5.00% V304E (GTG?GAG)  murB ? murB ? UDP?N?acetylenolpyruvoylglucosamine reductase N N N Only at ends of reads "High carbon, small bead" CBT728 RA NC_008542 "2,843,803" A?C 11.60% D55A (GAC?GCC)  Bcen2424_2568 ? Bcen2424_2568 ? pyridoxamine 5'?phosphate oxidase Y Y N "High carbon, planktonic" CBT738 RA NC_008542 "2,855,596" C?T 7.10% L125L (CTG?CTA)  Bcen2424_2580 ? Bcen2424_2580 ? major facilitator transporter Y N Y Synonymous "Low carbon, planktonic" CBT747 RA NC_008542 "2,870,694" G?A 5.70% P54S (CCG?TCG)  Bcen2424_2592 ? Bcen2424_2592 ? HAD family hydrolase Y Y N "High carbon, large bead" CBT718 RA NC_008542 "2,884,248" G?A 5.60% P92S (CCC?TCC)  Bcen2424_2605 ? Bcen2424_2605 ? "carbohydrate kinase, FGGY" Y Y N "High carbon, small bead" CBT727 RA NC_008542 "2,921,216" G?T 6.90% T67T (ACC?ACA)  Bcen2424_2637 ? Bcen2424_2637 ? "peptidase M48, Ste24p" Y N Y Synonymous "High carbon, small bead" CBT727 RA NC_008542 "2,969,725" G?A 6.30% intergenic (+33/+10) Bcen2424_2679 ? / ? Bcen2424_2680 None MIP family channel protein/FAD?dependent pyridine nucleotide?disulfide oxidoreductase Y N N Intergenic and not upstream "High carbon, large bead" CBT723 RA NC_008542 "3,022,692" G?C 5.90% D23E (GAC?GAG)  Bcen2424_2727 ? Bcen2424_2727 ? FmdB family regulatory protein Y Y N "High carbon, large bead" CBT722 RA NC_008542 "3,025,294" ?1 bp 8.10% coding (423/627 nt) Bcen2424_2730 ? Bcen2424_2730 ? hypothetical protein Y Y N "Low carbon, large bead" CBT735 RA NC_008542 "3,025,294" ?1 bp 5.50% coding (423/627 nt) Bcen2424_2730 ? Bcen2424_2730 ? hypothetical protein Y Y N Should be 2 bp deletion "High carbon, planktonic" CBT738 RA NC_008542 "3,025,294" ?1 bp 6.40% coding (423/627 nt) Bcen2424_2730 ? Bcen2424_2730 ? hypothetical protein Y Y N Should be 2 bp deletion "High carbon, large bead" CBT722 RA NC_008542 "3,025,295" ?1 bp 8.10% coding (422/627 nt) Bcen2424_2730 ? Bcen2424_2730 ? hypothetical protein N N N Part of another mutation Should be 2 bp deletion "Low carbon, large bead" CBT735 RA NC_008542 "3,025,295" ?1 bp 5.50% coding (422/627 nt) Bcen2424_2730 ? Bcen2424_2730 ? hypothetical protein N N N Part of another mutation Should be 2 bp deletion "High carbon, planktonic" CBT738 RA NC_008542 "3,025,295" ?1 bp 6.40% coding (422/627 nt) Bcen2424_2730 ? Bcen2424_2730 ? hypothetical protein N N N Part of another mutation Should be 2 bp deletion "High carbon, large bead" CBT718 JC NC_008542 "3,062,125" ?3 bp 9.70% coding (2435?2437/2490 nt) Bcen2424_2764 ? Bcen2424_2764 ? exporter?like protein Y Y N "High carbon, large bead" CBT720 JC NC_008542 "3,062,125" ?3 bp 9.90% coding (2435?2437/2490 nt) Bcen2424_2764 ? Bcen2424_2764 ? exporter?like protein Y Y N "High carbon, small bead" CBT726 JC NC_008542 "3,062,125" ?3 bp 5.50% coding (2435?2437/2490 nt) Bcen2424_2764 ? Bcen2424_2764 ? exporter?like protein Y Y N "Low carbon, large bead" CBT732 JC NC_008542 "3,062,125" ?3 bp 5.20% coding (2435?2437/2490 nt) Bcen2424_2764 ? Bcen2424_2764 ? exporter?like protein Y Y N "High carbon, planktonic" CBT737 JC NC_008542 "3,062,125" ?3 bp 7.00% coding (2435?2437/2490 nt) Bcen2424_2764 ? Bcen2424_2764 ? exporter?like protein Y Y N "Low carbon, planktonic" CBT744 JC NC_008542 "3,062,125" ?3 bp 9.40% coding (2435?2437/2490 nt) Bcen2424_2764 ? Bcen2424_2764 ? exporter?like protein Y Y N "Low carbon, planktonic" CBT745 JC NC_008542 "3,062,125" ?3 bp 5.00% coding (2435?2437/2490 nt) Bcen2424_2764 ? Bcen2424_2764 ? exporter?like protein Y Y N "High carbon, small bead" CBT726 RA NC_008542 "3,068,423" C?T 16.50% E46E (GAG?GAA)  Bcen2424_2772 ? Bcen2424_2772 ? acetyl?CoA acetyltransferase Y N Y Synonymous "High carbon, small bead" CBT726 RA NC_008542 "3,090,712" T?G 67.50% L89R (CTC?CGC)  Bcen2424_2794 ? Bcen2424_2794 ? HPr kinase/phosphorylase Y Y N "High carbon, small bead" CBT726 RA NC_008542 "3,090,981" C?T 8.90% H179Y (CAC?TAC)  Bcen2424_2794 ? Bcen2424_2794 ? HPr kinase/phosphorylase Y Y N "High carbon, small bead" CBT724 RA NC_008542 "3,091,084" G?C 7.70% G213A (GGC?GCC)  Bcen2424_2794 ? Bcen2424_2794 ? HPr kinase/phosphorylase Y Y N "High carbon, large bead" CBT722 RA NC_008542 "3,091,095" C?T 11.90% L217F (CTC?TTC)  Bcen2424_2794 ? Bcen2424_2794 ? HPr kinase/phosphorylase Y Y N "High carbon, planktonic" CBT737 RA NC_008542 "3,091,095" C?T 6.00% L217F (CTC?TTC)  Bcen2424_2794 ? Bcen2424_2794 ? HPr kinase/phosphorylase Y Y N "High carbon, planktonic" CBT737 RA NC_008542 "3,091,261" T?A 94.50% V272D (GTC?GAC)  Bcen2424_2794 ? Bcen2424_2794 ? HPr kinase/phosphorylase Y Y N "High carbon, small bead" CBT729 RA NC_008542 "3,091,263" G?A 100% A273T (GCG?ACG)  Bcen2424_2794 ? Bcen2424_2794 ? HPr kinase/phosphorylase Y Y N "High carbon, small bead" CBT728 RA NC_008542 "3,091,264" C?T 100% A273V (GCG?GTG)  Bcen2424_2794 ? Bcen2424_2794 ? HPr kinase/phosphorylase Y Y N "High carbon, large bead" CBT722 RA NC_008542 "3,091,270" G?C 23.60% G275A (GGC?GCC)  Bcen2424_2794 ? Bcen2424_2794 ? HPr kinase/phosphorylase Y Y N "High carbon, small bead" CBT726 RA NC_008542 "3,091,287" C?T 17.60% L281F (CTC?TTC)  Bcen2424_2794 ? Bcen2424_2794 ? HPr kinase/phosphorylase Y Y N "Low carbon, large bead" CBT730 RA NC_008542 "3,105,179" ?1 bp 6.90% coding (792/1167 nt) Bcen2424_2809 ? Bcen2424_2809 ? signal recognition particle?docking protein FtsY Y Y N Should be 2 bp deletion "Low carbon, large bead" CBT730 RA NC_008542 "3,105,180" ?1 bp 6.90% coding (793/1167 nt) Bcen2424_2809 ? Bcen2424_2809 ? signal recognition particle?docking protein FtsY N N N Part of another mutation Should be 2 bp deletion "High carbon, small bead" CBT727 RA NC_008542 "3,118,941" G?A 6.50% A524V (GCG?GTG)  Bcen2424_2821 ? Bcen2424_2821 ? "PTS system, N?acetylglucosamine?specific IIBC subunit" Y Y N "Low carbon, planktonic" CBT743 RA NC_008542 "3,121,256" ?1 bp 5.60% coding (1939/2583 nt) Bcen2424_2822 ? Bcen2424_2822 ? phosphoenolpyruvate?protein phosphotransferase Y Y N "High carbon, planktonic" CBT739 RA NC_008542 "3,130,480" T?A 5.80% E249V (GAA?GTA)  Bcen2424_2827 ? Bcen2424_2827 ? hypothetical protein Y Y N "High carbon, large bead" CBT718 RA NC_008542 "3,160,611" A?T 9.60% I63N (ATC?AAC)  Bcen2424_2861 ? Bcen2424_2861 ? HPr family phosphocarrier protein Y Y N "High carbon, planktonic" CBT739 RA NC_008542 "3,168,020" G?A 7.10% A399T (GCC?ACC)  Bcen2424_2868 ? Bcen2424_2868 ? Mg chelatase subunit ChlI Y Y N "High carbon, planktonic" CBT738 RA NC_008542 "3,182,139" G?T 5.40% intergenic (?1200/?1144) Bcen2424_2878 ? / ? Bcen2424_2881 None acyl?CoA dehydrogenase domain?containing protein/LysR family transcriptional regulator Y N N Intergenic and not upstream "Low carbon, large bead" CBT733 RA NC_008542 "3,200,910" ?1 bp 6.10% coding (751/1152 nt) Bcen2424_2897 ? Bcen2424_2897 ? VanZ like protein Y Y N Should be 2 bp deletion "Low carbon, large bead" CBT733 RA NC_008542 "3,200,911" ?1 bp 6.10% coding (750/1152 nt) Bcen2424_2897 ? Bcen2424_2897 ? VanZ like protein N N N Part of another mutation Should be 2 bp deletion "High carbon, planktonic" CBT740 RA NC_008542 "3,247,235" C?T 6.30% E158E (GAG?GAA)  Bcen2424_2938 ? Bcen2424_2938 ? diguanylate phosphodiesterase N N Y "Synonymous, reads appear misaligned" "High carbon, planktonic" CBT741 RA NC_008542 "3,247,235" C?T 6.10% E158E (GAG?GAA)  Bcen2424_2938 ? Bcen2424_2938 ? diguanylate phosphodiesterase N N Y "Synonymous, reads appear misaligned" "Low carbon, planktonic" CBT742 RA NC_008542 "3,247,235" C?T 7.80% E158E (GAG?GAA)  Bcen2424_2938 ? Bcen2424_2938 ? diguanylate phosphodiesterase N N Y "Synonymous, reads appear misaligned" "High carbon, planktonic" CBT739 RA NC_008542 "3,247,235" C?T 7.00% E158E (GAG?GAA)  Bcen2424_2938 ? Bcen2424_2938 ? diguanylate phosphodiesterase Y N Y Synonymous "High carbon, large bead" CBT722 RA NC_008542 "3,283,113" C?T 6.90% C107C (TGC?TGT)  Bcen2424_2970 ? Bcen2424_2970 ? bile acid:sodium symporter Y N Y Synonymous "High carbon, planktonic" CBT739 RA NC_008542 "3,294,354" G?A 7.00% R233H (CGC?CAC)  Bcen2424_2981 ? Bcen2424_2981 ? UDP?N?acetylglucosamine pyrophosphorylase Y Y N "Low carbon, planktonic" CBT744 JC NC_008542 "3,332,639" #NAME? 44.70% coding (547/1176 nt) flgI ? flgI ? flagellar basal body P?ring protein Y Y N "Low carbon, planktonic" CBT744 JC NC_008542 "3,339,134" ?65 bp 11.30% coding (113?177/933 nt) flgA ? flgA ? flagellar basal body P?ring biosynthesis protein FlgA Y Y N "Low carbon, planktonic" CBT747 RA NC_008542 "3,369,373" G?A 38.40% G224D (GGC?GAC)  Bcen2424_3054 ? Bcen2424_3054 ? putative signal transduction histidine kinase Y Y N "Low carbon, planktonic" CBT743 RA NC_008542 "3,370,100" T?C 5.50% M192T (ATG?ACG)  Bcen2424_3055 ? Bcen2424_3055 ? two component LuxR family transcriptional regulator Y Y N "High carbon, small bead" CBT729 RA NC_008542 "3,371,885" T?G 22.30% intergenic (+63/?189) Bcen2424_3056 ? / ? Bcen2424_3057 None amino acid permease?associated protein/hypothetical protein N N N Associated with reads w/ poor quality "Low carbon, large bead" CBT733 RA NC_008542 "3,371,885" T?G 16.10% intergenic (+63/?189) Bcen2424_3056 ? / ? Bcen2424_3057 None amino acid permease?associated protein/hypothetical protein N N N "Intergenic and not upstream, reads appear misaligned" "Low carbon, large bead" CBT735 RA NC_008542 "3,371,885" T?G 25.40% intergenic (+63/?189) Bcen2424_3056 ? / ? Bcen2424_3057 None amino acid permease?associated protein/hypothetical protein N N N "Intergenic and not upstream, reads appear misaligned" "High carbon, planktonic" CBT737 RA NC_008542 "3,371,885" T?G 17.90% intergenic (+63/?189) Bcen2424_3056 ? / ? Bcen2424_3057 None amino acid permease?associated protein/hypothetical protein N N N "Intergenic and not upstream, reads appear misaligned" "High carbon, large bead" CBT722 RA NC_008542 "3,383,631" C?T 7.10% A201V (GCA?GTA)  Bcen2424_3069 ? Bcen2424_3069 ? flagellar hook?length control protein Y Y N "Low carbon, planktonic" CBT746 RA NC_008542 "3,404,637" G?A 6.70% intergenic (+73/?165) Bcen2424_3090 ? / ? Bcen2424_3091 None TraR/DksA family transcriptional regulator/ATP?dependent protease peptidase subunit Y N N Intergenic and not upstream "High carbon, small bead" CBT727 RA NC_008542 "3,420,445" G?A 28.10% G467G (GGC?GGT)  gatB ? gatB ? aspartyl/glutamyl?tRNA amidotransferase subunit B Y N Y Synonymous "High carbon, small bead" CBT727 RA NC_008542 "1,279,195:1" +C 5.60% coding (1588/2145 nt) Bcen2424_1166 ? Bcen2424_1166 ? phospholipase C Y Y N Part of another mutation Should be 2 bp insertion "High carbon, small bead" CBT727 RA NC_008542 "1,279,195:2" #NAME? 5.60% coding (1588/2145 nt) Bcen2424_1166 ? Bcen2424_1166 ? phospholipase C N N N Part of another mutation Should be 2 bp insertion "High carbon, large bead" CBT720 RA NC_008542 "1,806,372:1" +C 64.10% coding (1679/1824 nt) Bcen2424_1639 ? Bcen2424_1639 ? cyclic peptide transporter Y Y N Should be 2 bp deletion "High carbon, large bead" CBT720 RA NC_008542 "1,806,372:2" #NAME? 64.00% coding (1679/1824 nt) Bcen2424_1639 ? Bcen2424_1639 ? cyclic peptide transporter N N N Part of another mutation Should be 2 bp deletion "High carbon, large bead" CBT720 RA NC_008542 "1,807,687:1" +C 5.60% coding (364/1824 nt) Bcen2424_1639 ? Bcen2424_1639 ? cyclic peptide transporter Y Y N "High carbon, planktonic" CBT738 RA NC_008542 "2,536,186:1" #NAME? 5.10% coding (462/618 nt) Bcen2424_2281 ? Bcen2424_2281 ? hypothetical protein Y Y N Should be 2 bp deletion "High carbon, planktonic" CBT738 RA NC_008542 "2,536,186:2" #NAME? 5.10% coding (462/618 nt) Bcen2424_2281 ? Bcen2424_2281 ? hypothetical protein N N N Part of another mutation Should be 2 bp deletion "Low carbon, planktonic" CBT744 RA NC_008542 "2,910,492:2" #NAME? 5.70% intergenic (?235/+81) Bcen2424_2626 ? / ? Bcen2424_2627 None "fructose?1,6?bisphosphate aldolase/pyruvate kinase" Y N N Intergenic and not upstream Actually looks like 2 bp insertion "High carbon, planktonic" CBT739 RA NC_008543 "17,260" T?A 5.50% A159A (GCA?GCT)  Bcen2424_3180 ? Bcen2424_3180 ? LuxR family transcriptional regulator Y N Y Synonymous "High carbon, small bead" CBT726 JC NC_008543 "18,731" ?40 bp 79.90% [Bcen2424_3181] [Bcen2424_3181] [Bcen2424_3181] Y Y N "High carbon, planktonic" CBT739 RA NC_008543 "19,467" C?T 5.20% V218M (GTG?ATG)  Bcen2424_3182 ? Bcen2424_3182 ? hypothetical protein Y Y N "High carbon, small bead" CBT727 RA NC_008543 "31,358" A?T 6.70% T397S (ACG?TCG)  Bcen2424_3191 ? Bcen2424_3191 ? RND efflux system outer membrane lipoprotein Y Y N "High carbon, large bead" CBT722 RA NC_008543 "43,742" G?C 10.40% intergenic (+267/?18) Bcen2424_3203 ? / ? Bcen2424_3204 Bcen2424_3204 ? multiple antibiotic resistance (MarC)?like proteins/integrase catalytic subunit N N N Reads appear to be misaligned "High carbon, large bead" CBT723 RA NC_008543 "43,742" G?C 6.80% intergenic (+267/?18) Bcen2424_3203 ? / ? Bcen2424_3204 Bcen2424_3204 ? multiple antibiotic resistance (MarC)?like proteins/integrase catalytic subunit N N N Reads appear to be misaligned "High carbon, small bead" CBT728 RA NC_008543 "43,742" G?C 7.70% intergenic (+267/?18) Bcen2424_3203 ? / ? Bcen2424_3204 Bcen2424_3204 ? multiple antibiotic resistance (MarC)?like proteins/integrase catalytic subunit N N N Only at ends of reads "Low carbon, large bead" CBT730 RA NC_008543 "43,742" G?C 5.30% intergenic (+267/?18) Bcen2424_3203 ? / ? Bcen2424_3204 Bcen2424_3204 ? multiple antibiotic resistance (MarC)?like proteins/integrase catalytic subunit N N N Only at ends of reads "High carbon, planktonic" CBT736 RA NC_008543 "43,742" G?C 5.80% intergenic (+267/?18) Bcen2424_3203 ? / ? Bcen2424_3204 Bcen2424_3204 ? multiple antibiotic resistance (MarC)?like proteins/integrase catalytic subunit N N N Only at ends of reads "High carbon, large bead" CBT722 RA NC_008543 "43,745" A?T 9.80% intergenic (+270/?15) Bcen2424_3203 ? / ? Bcen2424_3204 Bcen2424_3204 ? multiple antibiotic resistance (MarC)?like proteins/integrase catalytic subunit N N N Reads appear to be misaligned "High carbon, small bead" CBT728 RA NC_008543 "43,745" A?T 5.60% intergenic (+270/?15) Bcen2424_3203 ? / ? Bcen2424_3204 Bcen2424_3204 ? multiple antibiotic resistance (MarC)?like proteins/integrase catalytic subunit N N N Only at ends of reads "Low carbon, large bead" CBT730 RA NC_008543 "43,745" A?T 5.40% intergenic (+270/?15) Bcen2424_3203 ? / ? Bcen2424_3204 Bcen2424_3204 ? multiple antibiotic resistance (MarC)?like proteins/integrase catalytic subunit N N N Only at ends of reads "High carbon, small bead" CBT725 RA NC_008543 "56,474" C?G 13.00% T149S (ACC?AGC)  Bcen2424_3215 ? Bcen2424_3215 ? major facilitator transporter Y Y N "High carbon, planktonic" CBT741 JC NC_008543 "73,381" #NAME? 35.90% coding (328/375 nt) Bcen2424_3233 ? Bcen2424_3233 ? transposase N N N Only at ends of reads "High carbon, large bead" CBT718 RA NC_008543 "86,753" C?T 12.10% G120G (GGC?GGT)  Bcen2424_3247 ? Bcen2424_3247 ? dihydrolipoamide dehydrogenase Y N Y Synonymous "High carbon, large bead" CBT722 RA NC_008543 "106,789" G?A 5.40% R93C (CGC?TGC)  Bcen2424_3265 ? Bcen2424_3265 ? DSBA oxidoreductase Y Y N "Low carbon, planktonic" CBT747 RA NC_008543 "112,480" G?A 9.40% V162V (GTC?GTT)  Bcen2424_3272 ? Bcen2424_3272 ? amidase N N Y "Synonymous, reads appear misaligned" "High carbon, large bead" CBT722 JC NC_008543 "115,685" ?50 bp 19.10% coding (545?594/1008 nt) Bcen2424_3275 ? Bcen2424_3275 ? AraC family transcriptional regulator ??? ??? N "High carbon, large bead" CBT723 JC NC_008543 "115,685" ?50 bp 19.90% coding (545?594/1008 nt) Bcen2424_3275 ? Bcen2424_3275 ? AraC family transcriptional regulator ??? ??? N "High carbon, small bead" CBT724 JC NC_008543 "115,685" ?50 bp 18.80% coding (545?594/1008 nt) Bcen2424_3275 ? Bcen2424_3275 ? AraC family transcriptional regulator ??? ??? N "High carbon, small bead" CBT726 JC NC_008543 "115,685" ?50 bp 9.80% coding (545?594/1008 nt) Bcen2424_3275 ? Bcen2424_3275 ? AraC family transcriptional regulator ??? ??? N "Low carbon, large bead" CBT730 JC NC_008543 "115,685" ?50 bp 30.60% coding (545?594/1008 nt) Bcen2424_3275 ? Bcen2424_3275 ? AraC family transcriptional regulator ??? ??? N "Low carbon, large bead" CBT733 JC NC_008543 "115,685" ?50 bp 24.00% coding (545?594/1008 nt) Bcen2424_3275 ? Bcen2424_3275 ? AraC family transcriptional regulator ??? ??? N "High carbon, planktonic" CBT736 JC NC_008543 "115,685" ?50 bp 24.60% coding (545?594/1008 nt) Bcen2424_3275 ? Bcen2424_3275 ? AraC family transcriptional regulator ??? ??? N "High carbon, planktonic" CBT739 RA NC_008543 "140,601" T?A 5.70% intergenic (?15/?287) Bcen2424_3299 ? / ? Bcen2424_3300 Bcen2424_3299 ? integrase catalytic subunit/transposase IS3/IS911 family protein N N N Only at ends of reads "Low carbon, planktonic" CBT742 RA NC_008543 "140,601" T?A 8.90% intergenic (?15/?287) Bcen2424_3299 ? / ? Bcen2424_3300 Bcen2424_3299 ? integrase catalytic subunit/transposase IS3/IS911 family protein N N N Only at ends of reads "Low carbon, planktonic" CBT742 RA NC_008543 "140,604" C?G 8.60% intergenic (?18/?284) Bcen2424_3299 ? / ? Bcen2424_3300 Bcen2424_3299 ? integrase catalytic subunit/transposase IS3/IS911 family protein N N N Only at ends of reads "High carbon, large bead" CBT718 JC NC_008543 "222,317" ?46 bp 11.20% [Bcen2424_3392] [Bcen2424_3392] [Bcen2424_3392] N N N Known error "High carbon, large bead" CBT720 JC NC_008543 "222,317" ?46 bp 25.90% [Bcen2424_3392] [Bcen2424_3392] [Bcen2424_3392] N N N Known error "High carbon, large bead" CBT721 JC NC_008543 "222,317" ?46 bp 24.20% [Bcen2424_3392] [Bcen2424_3392] [Bcen2424_3392] N N N Known error "High carbon, large bead" CBT722 JC NC_008543 "222,317" ?46 bp 28.70% [Bcen2424_3392] [Bcen2424_3392] [Bcen2424_3392] N N N Known error "High carbon, large bead" CBT723 JC NC_008543 "222,317" ?46 bp 30.90% [Bcen2424_3392] [Bcen2424_3392] [Bcen2424_3392] N N N Known error "High carbon, small bead" CBT724 JC NC_008543 "222,317" ?46 bp 42.00% [Bcen2424_3392] [Bcen2424_3392] [Bcen2424_3392] N N N Known error "High carbon, small bead" CBT725 JC NC_008543 "222,317" ?46 bp 24.20% [Bcen2424_3392] [Bcen2424_3392] [Bcen2424_3392] N N N Known error "High carbon, small bead" CBT726 JC NC_008543 "222,317" ?46 bp 28.30% [Bcen2424_3392] [Bcen2424_3392] [Bcen2424_3392] N N N Known error "High carbon, small bead" CBT727 JC NC_008543 "222,317" ?46 bp 37.10% [Bcen2424_3392] [Bcen2424_3392] [Bcen2424_3392] N N N Known error "High carbon, small bead" CBT728 JC NC_008543 "222,317" ?46 bp 33.80% [Bcen2424_3392] [Bcen2424_3392] [Bcen2424_3392] N N N Known error "High carbon, small bead" CBT729 JC NC_008543 "222,317" ?46 bp 35.50% [Bcen2424_3392] [Bcen2424_3392] [Bcen2424_3392] N N N Known error "Low carbon, large bead" CBT730 JC NC_008543 "222,317" ?46 bp 32.70% [Bcen2424_3392] [Bcen2424_3392] [Bcen2424_3392] N N N Known error "Low carbon, large bead" CBT731 JC NC_008543 "222,317" ?46 bp 25.10% [Bcen2424_3392] [Bcen2424_3392] [Bcen2424_3392] N N N Known error "Low carbon, large bead" CBT732 JC NC_008543 "222,317" ?46 bp 14.00% [Bcen2424_3392] [Bcen2424_3392] [Bcen2424_3392] N N N Known error "Low carbon, large bead" CBT733 JC NC_008543 "222,317" ?46 bp 22.40% [Bcen2424_3392] [Bcen2424_3392] [Bcen2424_3392] N N N Known error "Low carbon, large bead" CBT734 JC NC_008543 "222,317" ?46 bp 23.50% [Bcen2424_3392] [Bcen2424_3392] [Bcen2424_3392] N N N Known error "Low carbon, large bead" CBT735 JC NC_008543 "222,317" ?46 bp 33.50% [Bcen2424_3392] [Bcen2424_3392] [Bcen2424_3392] N N N Known error "High carbon, planktonic" CBT736 JC NC_008543 "222,317" ?46 bp 25.00% [Bcen2424_3392] [Bcen2424_3392] [Bcen2424_3392] N N N Known error "High carbon, planktonic" CBT737 JC NC_008543 "222,317" ?46 bp 31.50% [Bcen2424_3392] [Bcen2424_3392] [Bcen2424_3392] N N N Known error "High carbon, planktonic" CBT738 JC NC_008543 "222,317" ?46 bp 30.20% [Bcen2424_3392] [Bcen2424_3392] [Bcen2424_3392] N N N Known error "High carbon, planktonic" CBT739 JC NC_008543 "222,317" ?46 bp 30.40% [Bcen2424_3392] [Bcen2424_3392] [Bcen2424_3392] N N N Known error "High carbon, planktonic" CBT740 JC NC_008543 "222,317" ?46 bp 25.20% [Bcen2424_3392] [Bcen2424_3392] [Bcen2424_3392] N N N Known error "High carbon, planktonic" CBT741 JC NC_008543 "222,317" ?46 bp 31.50% [Bcen2424_3392] [Bcen2424_3392] [Bcen2424_3392] N N N Known error "Low carbon, planktonic" CBT742 JC NC_008543 "222,317" ?46 bp 35.60% [Bcen2424_3392] [Bcen2424_3392] [Bcen2424_3392] N N N Known error "Low carbon, planktonic" CBT743 JC NC_008543 "222,317" ?46 bp 31.60% [Bcen2424_3392] [Bcen2424_3392] [Bcen2424_3392] N N N Known error "Low carbon, planktonic" CBT744 JC NC_008543 "222,317" ?46 bp 34.30% [Bcen2424_3392] [Bcen2424_3392] [Bcen2424_3392] N N N Known error "Low carbon, planktonic" CBT745 JC NC_008543 "222,317" ?46 bp 39.60% [Bcen2424_3392] [Bcen2424_3392] [Bcen2424_3392] N N N Known error "Low carbon, planktonic" CBT746 JC NC_008543 "222,317" ?46 bp 35.00% [Bcen2424_3392] [Bcen2424_3392] [Bcen2424_3392] N N N Known error "Low carbon, planktonic" CBT747 JC NC_008543 "222,317" ?46 bp 28.40% [Bcen2424_3392] [Bcen2424_3392] [Bcen2424_3392] N N N Known error "Low carbon, large bead" CBT730 RA NC_008543 "225,382" T?C 100% H200R (CAC?CGC)  Bcen2424_3395 ? Bcen2424_3395 ? major facilitator transporter Y Y N "Low carbon, large bead" CBT733 RA NC_008543 "225,382" T?C 100% H200R (CAC?CGC)  Bcen2424_3395 ? Bcen2424_3395 ? major facilitator transporter Y Y N "Low carbon, large bead" CBT731 RA NC_008543 "225,508" G?A 100% A158V (GCG?GTG)  Bcen2424_3395 ? Bcen2424_3395 ? major facilitator transporter Y Y N "Low carbon, large bead" CBT734 RA NC_008543 "225,508" G?A 100% A158V (GCG?GTG)  Bcen2424_3395 ? Bcen2424_3395 ? major facilitator transporter Y Y N "Low carbon, large bead" CBT735 RA NC_008543 "225,508" G?A 100% A158V (GCG?GTG)  Bcen2424_3395 ? Bcen2424_3395 ? major facilitator transporter Y Y N "Low carbon, large bead" CBT732 RA NC_008543 "225,574" C?T 100% G136E (GGA?GAA)  Bcen2424_3395 ? Bcen2424_3395 ? major facilitator transporter Y Y N "Low carbon, planktonic" CBT744 RA NC_008543 "225,574" C?T 28.90% G136E (GGA?GAA)  Bcen2424_3395 ? Bcen2424_3395 ? major facilitator transporter Y Y N "High carbon, small bead" CBT726 RA NC_008543 "341,834" G?A 6.10% L364L (TTG?TTA)  Bcen2424_3503 ? Bcen2424_3503 ? epocide hydrolase domain?containing protein Y N Y Synonymous "High carbon, planktonic" CBT739 RA NC_008543 "355,029" G?A 10.20% S68S (TCG?TCA)  Bcen2424_3517 ? Bcen2424_3517 ? SufS subfamily cysteine desulfurase N N Y "Synonymous, reads appear misaligned" "High carbon, planktonic" CBT740 RA NC_008543 "379,394" G?A 8.90% A116V (GCC?GTC)  Bcen2424_3539 ? Bcen2424_3539 ? alcohol dehydrogenase Y Y N "High carbon, small bead" CBT724 RA NC_008543 "382,924" C?T 5.30% A169V (GCG?GTG)  Bcen2424_3542 ? Bcen2424_3542 ? short chain dehydrogenase Y Y N "High carbon, small bead" CBT727 JC NC_008543 "388,929" ?6 bp 5.80% coding (493?498/921 nt) Bcen2424_3548 ? Bcen2424_3548 ? hypothetical protein Y Y N "High carbon, planktonic" CBT739 JC NC_008543 "388,929" ?6 bp 5.20% coding (493?498/921 nt) Bcen2424_3548 ? Bcen2424_3548 ? hypothetical protein Y Y N "High carbon, small bead" CBT726 JC NC_008543 "397,372" ?10 bp 8.90% coding (157?166/2004 nt) Bcen2424_3554 ? Bcen2424_3554 ? yciR Y Y N "Low carbon, large bead" CBT730 RA NC_008543 "397,531" G?C 100% A106P (GCG?CCG)  Bcen2424_3554 ? Bcen2424_3554 ? yciR Y Y N "High carbon, small bead" CBT727 RA NC_008543 "397,730" T?G 100% I172S (ATC?AGC)  Bcen2424_3554 ? Bcen2424_3554 ? yciR Y Y N "Low carbon, large bead" CBT731 RA NC_008543 "397,814" G?A 64.30% R200H (CGC?CAC)  Bcen2424_3554 ? Bcen2424_3554 ? yciR Y Y N "High carbon, small bead" CBT724 RA NC_008543 "398,055" G?T 9.80% K280N (AAG?AAT)  Bcen2424_3554 ? Bcen2424_3554 ? yciR Y Y N "High carbon, large bead" CBT723 RA NC_008543 "398,278" T?G 100% Y355D (TAC?GAC)  Bcen2424_3554 ? Bcen2424_3554 ? yciR Y Y N "High carbon, small bead" CBT724 RA NC_008543 "398,278" T?G 69.00% Y355D (TAC?GAC)  Bcen2424_3554 ? Bcen2424_3554 ? yciR Y Y N "High carbon, small bead" CBT725 RA NC_008543 "398,278" T?G 100% Y355D (TAC?GAC)  Bcen2424_3554 ? Bcen2424_3554 ? yciR Y Y N "Low carbon, large bead" CBT733 RA NC_008543 "398,479" G?T 64.90% E422* (GAG?TAG)  Bcen2424_3554 ? Bcen2424_3554 ? yciR Y Y N "High carbon, large bead" CBT718 RA NC_008543 "398,606" T?G 44.20% F464C (TTC?TGC)  Bcen2424_3554 ? Bcen2424_3554 ? yciR Y Y N "High carbon, planktonic" CBT741 JC NC_008543 "398,668" ?12 bp 63.70% coding (1453?1464/2004 nt) Bcen2424_3554 ? Bcen2424_3554 ? yciR Y Y N "High carbon, small bead" CBT726 RA NC_008543 "398,906" A?T 67.10% D564V (GAT?GTT)  Bcen2424_3554 ? Bcen2424_3554 ? yciR Y Y N "High carbon, large bead" CBT722 RA NC_008543 "398,924" C?T 24.30% S570L (TCG?TTG)  Bcen2424_3554 ? Bcen2424_3554 ? yciR Y Y N "High carbon, large bead" CBT720 RA NC_008543 "398,932" T?C 100% S573P (TCG?CCG)  Bcen2424_3554 ? Bcen2424_3554 ? yciR Y Y N "High carbon, small bead" CBT724 RA NC_008543 "400,092" C?T 8.10% E14K (GAA?AAA)  Bcen2424_3555 ? Bcen2424_3555 ? enoyl?CoA hydratase Y Y N "High carbon, small bead" CBT727 RA NC_008543 "417,953" A?G 5.10% Y460C (TAC?TGC)  Bcen2424_3574 ? Bcen2424_3574 ? molecular chaperone?like protein Y Y N "Low carbon, large bead" CBT730 RA NC_008543 "421,247" C?T 5.20% intergenic (+69/+23) Bcen2424_3575 ? / ? Bcen2424_3576 None molecular chaperone?like protein/amidinotransferase N N N "Intergenic and not upstream, reads appear misaligned" "High carbon, small bead" CBT724 RA NC_008543 "445,244" C?T 10.00% intergenic (?320/+71) Bcen2424_3599 ? / ? Bcen2424_3600 None hypothetical protein/alpha/beta hydrolase domain?containing protein Y N N Intergenic and not upstream "High carbon, small bead" CBT727 RA NC_008543 "447,592" ?1 bp 6.90% coding (174/2451 nt) Bcen2424_3600 ? Bcen2424_3600 ? alpha/beta hydrolase domain?containing protein Y Y N Should be 3bp deletion "High carbon, small bead" CBT727 RA NC_008543 "447,593" ?1 bp 7.40% coding (173/2451 nt) Bcen2424_3600 ? Bcen2424_3600 ? alpha/beta hydrolase domain?containing protein N N N Part of another mutation Should be 3bp deletion "High carbon, small bead" CBT727 RA NC_008543 "447,594" ?1 bp 7.40% coding (172/2451 nt) Bcen2424_3600 ? Bcen2424_3600 ? alpha/beta hydrolase domain?containing protein N N N Part of another mutation Should be 3bp deletion "High carbon, small bead" CBT727 RA NC_008543 "448,455" ?1 bp 5.30% coding (1016/1719 nt) Bcen2424_3601 ? Bcen2424_3601 ? glucose?methanol?choline oxidoreductase Y Y N "High carbon, planktonic" CBT739 RA NC_008543 "457,843" G?A 5.80% A46V (GCG?GTG)  Bcen2424_3611 ? Bcen2424_3611 ? short?chain dehydrogenase/reductase SDR Y Y N "High carbon, small bead" CBT724 RA NC_008543 "463,685" G?A 9.10% H136H (CAC?CAT)  Bcen2424_3618 ? Bcen2424_3618 ? aromatic?ring?hydroxylating dioxygenase subunit beta Y N Y Synonymous "High carbon, small bead" CBT724 RA NC_008543 "469,313" A?T 8.90% intergenic (?140/?271) Bcen2424_3622 ? / ? Bcen2424_3623 Bcen2424_3622 ? major facilitator transporter/porin Y Y N "Low carbon, large bead" CBT733 RA NC_008543 "493,887" C?A 14.80% G391C (GGC?TGC)  Bcen2424_3648 ? Bcen2424_3648 ? mercuric reductase Y Y N "High carbon, small bead" CBT725 RA NC_008543 "504,616" C?T 100% V219V (GTG?GTA)  Bcen2424_3658 ? Bcen2424_3658 ? hypothetical protein Y N Y Synonymous "It's synonymous, but its also fixed" "Low carbon, planktonic" CBT744 RA NC_008543 "510,390" G?A 6.80% intergenic (?472/?807) Bcen2424_3661 ? / ? Bcen2424_3662 None triple helix repeat?containing collagen/carboxymuconolactone decarboxylase N N N "Intergenic and not upstream, reads appear misaligned" "Low carbon, planktonic" CBT746 RA NC_008543 "510,390" G?T 13.90% intergenic (?472/?807) Bcen2424_3661 ? / ? Bcen2424_3662 None triple helix repeat?containing collagen/carboxymuconolactone decarboxylase N N N "Intergenic and not upstream, reads appear misaligned" "High carbon, planktonic" CBT737 RA NC_008543 "510,390" G?A 8.20% intergenic (?472/?807) Bcen2424_3661 ? / ? Bcen2424_3662 None triple helix repeat?containing collagen/carboxymuconolactone decarboxylase Y N N Intergenic and not upstream "Low carbon, large bead" CBT733 RA NC_008543 "510,612" G?T 8.20% intergenic (?694/?585) Bcen2424_3661 ? / ? Bcen2424_3662 None triple helix repeat?containing collagen/carboxymuconolactone decarboxylase N N N "Intergenic and not upstream, reads appear misaligned" "High carbon, small bead" CBT725 RA NC_008543 "518,153" C?T 13.70% V218V (GTG?GTA)  Bcen2424_3669 ? Bcen2424_3669 ? LysR family transcriptional regulator Y N Y Synonymous "High carbon, small bead" CBT725 JC NC_008543 "547,972" #NAME? 13.30% coding (830/1617 nt) Bcen2424_3694 ? Bcen2424_3694 ? regulator of RNA terminal phosphate cyclase N N N Only at ends of reads "High carbon, planktonic" CBT741 RA NC_008543 "582,778" T?A 21.20% T427S (ACG?TCG)  Bcen2424_3731 ? Bcen2424_3731 ? polyhydroxyalkanoate depolymerase Y Y N "High carbon, large bead" CBT718 RA NC_008543 "645,149" A?C 11.80% K120Q (AAG?CAG)  Bcen2424_3785 ? Bcen2424_3785 ? wspR?like HRR Y Y N Can see that K120Q and L135F occur on different backgrounds "High carbon, large bead" CBT718 RA NC_008543 "645,194" C?T 64.80% L135F (CTT?TTT)  Bcen2424_3785 ? Bcen2424_3785 ? wspR?like HRR Y Y N Can see that K120Q and L135F occur on different backgrounds "Low carbon, large bead" CBT730 RA NC_008543 "645,194" C?T 100% L135F (CTT?TTT)  Bcen2424_3785 ? Bcen2424_3785 ? wspR?like HRR Y Y N "Low carbon, large bead" CBT732 RA NC_008543 "645,194" C?T 100% L135F (CTT?TTT)  Bcen2424_3785 ? Bcen2424_3785 ? wspR?like HRR Y Y N "Low carbon, large bead" CBT734 RA NC_008543 "645,194" C?T 100% L135F (CTT?TTT)  Bcen2424_3785 ? Bcen2424_3785 ? wspR?like HRR Y Y N "High carbon, large bead" CBT718 RA NC_008543 "645,305" C?G 10.10% P172A (CCG?GCG)  Bcen2424_3785 ? Bcen2424_3785 ? wspR?like HRR Y Y N "Also appears to be on a different background, though evidence less clear" "Low carbon, large bead" CBT730 RA NC_008543 "645,931" C?A 5.50% intergenic (+6/?119) Bcen2424_3785 ? / ? Bcen2424_3786 Bcen2424_3786 ? wspR?like HRR/wspA Y Y N "High carbon, planktonic" CBT739 RA NC_008543 "647,404" C?T 14.50% A452V (GCC?GTC)  Bcen2424_3786 ? Bcen2424_3786 ? wspA Y Y N "High carbon, large bead" CBT723 RA NC_008543 "647,580" C?G 18.40% Q511E (CAG?GAG) ‡ Bcen2424_3786 ? Bcen2424_3786 ? wspA Y Y N "2 adjacent mutations, resulting amino acid should be arginine" "High carbon, large bead" CBT723 RA NC_008543 "647,581" A?C 18.30% Q511P (CAG?CCG) ‡ Bcen2424_3786 ? Bcen2424_3786 ? wspA N N N Part of another mutation "2 adjacent mutations, resulting amino acid should be arginine" "High carbon, planktonic" CBT740 RA NC_008543 "651,719" A?G 61.30% M301V (ATG?GTG)  Bcen2424_3791 ? Bcen2424_3791 ? wspE Y Y N "High carbon, small bead" CBT729 RA NC_008543 "651,963" C?T 100% A382V (GCG?GTG)  Bcen2424_3791 ? Bcen2424_3791 ? wspE Y Y N "Low carbon, large bead" CBT731 RA NC_008543 "651,963" C?T 100% A382V (GCG?GTG)  Bcen2424_3791 ? Bcen2424_3791 ? wspE Y Y N "High carbon, small bead" CBT725 RA NC_008543 "651,969" A?T 100% H384L (CAC?CTC)  Bcen2424_3791 ? Bcen2424_3791 ? wspE Y Y N "High carbon, large bead" CBT721 RA NC_008543 "652,215" C?T 48.30% A466V (GCG?GTG)  Bcen2424_3791 ? Bcen2424_3791 ? wspE Y Y N "High carbon, small bead" CBT727 RA NC_008543 "652,215" C?T 100% A466V (GCG?GTG)  Bcen2424_3791 ? Bcen2424_3791 ? wspE Y Y N "High carbon, small bead" CBT724 RA NC_008543 "652,418" C?G 76.00% R534G (CGG?GGG)  Bcen2424_3791 ? Bcen2424_3791 ? wspE Y Y N "High carbon, large bead" CBT723 RA NC_008543 "652,559" A?G 38.40% M581V (ATG?GTG)  Bcen2424_3791 ? Bcen2424_3791 ? wspE Y Y N "Low carbon, large bead" CBT733 RA NC_008543 "652,559" A?C 100% M581L (ATG?CTG)  Bcen2424_3791 ? Bcen2424_3791 ? wspE Y Y N "Low carbon, large bead" CBT735 RA NC_008543 "652,773" A?T 100% D652V (GAC?GTC)  Bcen2424_3791 ? Bcen2424_3791 ? wspE Y Y N "High carbon, small bead" CBT726 RA NC_008543 "652,779" C?T 30.40% S654L (TCG?TTG)  Bcen2424_3791 ? Bcen2424_3791 ? wspE Y Y N "High carbon, large bead" CBT722 RA NC_008543 "653,055" T?A 76.00% L746H (CTC?CAC)  Bcen2424_3791 ? Bcen2424_3791 ? wspE Y Y N "High carbon, small bead" CBT724 RA NC_008543 "653,055" T?A 6.40% L746H (CTC?CAC)  Bcen2424_3791 ? Bcen2424_3791 ? wspE Y Y N "Low carbon, planktonic" CBT745 RA NC_008543 "662,991" A?T 16.30% intergenic (?388/?54) Bcen2424_3800 ? / ? Bcen2424_3801 Bcen2424_3801 ? LysR family transcriptional regulator/AraC family transcriptional regulator Y Y N "High carbon, small bead" CBT727 RA NC_008543 "689,104" ?1 bp 7.80% coding (1549/2226 nt) Bcen2424_3824 ? Bcen2424_3824 ? hypothetical protein Y Y N Some reads have a 3bp deletion that overlaps this "High carbon, small bead" CBT727 RA NC_008543 "747,998" G?T 18.50% T22T (ACG?ACT)  rpsU ? rpsU ? 30S ribosomal protein S21 Y N Y Synonymous "High carbon, planktonic" CBT739 RA NC_008543 "752,708" G?A 100% A629T (GCC?ACC)  Bcen2424_3886 ? Bcen2424_3886 ? RNA polymerase sigma factor RpoD Y Y N "Low carbon, large bead" CBT735 RA NC_008543 "766,479" A?T 18.50% S604T (TCG?ACG)  Bcen2424_3895 ? Bcen2424_3895 ? hydrophobe/amphiphile efflux?1 (HAE1) family protein Y Y N "High carbon, planktonic" CBT738 RA NC_008543 "773,409" C?T 100% G139S (GGC?AGC)  Bcen2424_3899 ? Bcen2424_3899 ? RND efflux system outer membrane lipoprotein Y Y N "High carbon, large bead" CBT718 RA NC_008543 "818,108" A?T 32.60% K44M (AAG?ATG)  gltA ? gltA ? type II citrate synthase Y Y N "Low carbon, large bead" CBT733 RA NC_008543 "835,945" ?1 bp 5.20% coding (456/2127 nt) Bcen2424_3955 ? Bcen2424_3955 ? hypothetical protein Y Y N "High carbon, planktonic" CBT739 RA NC_008543 "872,925" ?1 bp 6.30% coding (1692/2469 nt) Bcen2424_3984 ? Bcen2424_3984 ? formate dehydrogenase subunit alpha Y Y N "High carbon, small bead" CBT727 RA NC_008543 "904,838" G?C 5.20% A116G (GCC?GGC)  Bcen2424_4014 ? Bcen2424_4014 ? aliphatic sulfonate ABC transporter periplasmic ligand?binding protein Y Y N "High carbon, large bead" CBT718 RA NC_008543 "913,757" G?T 6.40% Q116K (CAG?AAG)  Bcen2424_4022 ? Bcen2424_4022 ? nitrate/sulfonate/bicarbonate ABC transporter periplasmic ligand?binding protein Y Y N "High carbon, planktonic" CBT739 RA NC_008543 "916,197" C?T 5.10% D102N (GAC?AAC)  Bcen2424_4024 ? Bcen2424_4024 ? glycosyl transferase family protein Y Y N "High carbon, planktonic" CBT740 JC NC_008543 "960,782" #NAME? 5.40% coding (1210/1506 nt) Bcen2424_4065 ? Bcen2424_4065 ? amino acid permease N N N Only at ends of reads "High carbon, planktonic" CBT739 RA NC_008543 "1,004,659" C?T 6.60% G264S (GGC?AGC)  Bcen2424_4104 ? Bcen2424_4104 ? hypothetical protein Y Y N "High carbon, planktonic" CBT739 RA NC_008543 "1,005,048" G?A 9.50% A134V (GCC?GTC)  Bcen2424_4104 ? Bcen2424_4104 ? hypothetical protein Y Y N "High carbon, planktonic" CBT738 RA NC_008543 "1,047,512" C?A 5.10% V166V (GTG?GTT)  Bcen2424_4137 ? Bcen2424_4137 ? aldehyde dehydrogenase Y N Y Synonymous "High carbon, planktonic" CBT740 RA NC_008543 "1,081,616" ?1 bp 5.10% coding (222/1083 nt) Bcen2424_4166 ? Bcen2424_4166 ? "peptidase S58, DmpA" Y Y N "High carbon, small bead" CBT725 RA NC_008543 "1,121,748" G?A 6.10% G396R (GGA?AGA)  Bcen2424_4198 ? Bcen2424_4198 ? hypothetical protein Y Y N "Low carbon, large bead" CBT733 RA NC_008543 "1,137,268" C?A 69.30% P214T (CCG?ACG)  Bcen2424_4209 ? Bcen2424_4209 ? sigma?54 dependent trancsriptional regulator Y Y N "High carbon, small bead" CBT725 RA NC_008543 "1,141,377" A?G 14.20% F75S (TTC?TCC)  Bcen2424_4211 ? Bcen2424_4211 ? hypothetical protein Y Y N "High carbon, small bead" CBT725 RA NC_008543 "1,143,020" C?G 30.70% A249P (GCC?CCC)  Bcen2424_4213 ? Bcen2424_4213 ? acyl?CoA dehydrogenase Y Y N "Low carbon, large bead" CBT732 RA NC_008543 "1,145,181" T?G 100% intergenic (?207/?715) Bcen2424_4215 ? / ? Bcen2424_4216 None cyclic nucleotide?binding protein/CRP/FNR family transcriptional regulator Y N N Intergenic and not upstream "High carbon, small bead" CBT727 RA NC_008543 "1,172,466" C?T 6.40% P268S (CCG?TCG)  Bcen2424_4240 ? Bcen2424_4240 ? alcohol dehydrogenase Y Y N "High carbon, planktonic" CBT738 RA NC_008543 "1,176,951" C?A 5.60% intergenic (?102/+7) Bcen2424_4243 ? / ? Bcen2424_4244 Bcen2424_4243 ? binding?protein?dependent transport system inner membrane protein/extracellular solute?binding protein Y Y N "High carbon, large bead" CBT721 RA NC_008543 "1,187,191" ?1 bp 5.20% coding (154/822 nt) Bcen2424_4252 ? Bcen2424_4252 ? ABC transporter Y Y N "Low carbon, planktonic" CBT742 RA NC_008543 "1,190,593" G?T 5.40% A291E (GCG?GAG)  Bcen2424_4256 ? Bcen2424_4256 ? alkanesulfonate monooxygenase Y Y N "High carbon, small bead" CBT727 RA NC_008543 "1,231,121" ?1 bp 6.60% coding (1066/1179 nt) Bcen2424_4292 ? Bcen2424_4292 ? RND family efflux transporter MFP subunit Y Y N Should be 2 bp deletion "High carbon, small bead" CBT727 RA NC_008543 "1,231,122" ?1 bp 6.40% coding (1065/1179 nt) Bcen2424_4292 ? Bcen2424_4292 ? RND family efflux transporter MFP subunit N N N Part of another mutation Should be 2 bp deletion "High carbon, large bead" CBT718 RA NC_008543 "1,240,563" A?G 5.70% F74F (TTT?TTC)  Bcen2424_4297 ? Bcen2424_4297 ? membrane protein?like protein Y N Y Synonymous "High carbon, small bead" CBT724 RA NC_008543 "1,240,877" T?C 15.80% H382R (CAC?CGC)  Bcen2424_4298 ? Bcen2424_4298 ? voltage?gated potassium channel Y Y N "Low carbon, planktonic" CBT747 RA NC_008543 "1,252,261" C?A 5.10% P62P (CCG?CCT)  Bcen2424_4308 ? Bcen2424_4308 ? cupin N N Y "Synonymous, reads appear misaligned" "High carbon, planktonic" CBT737 JC NC_008543 "1,269,979" #NAME? 5.80% coding (267/948 nt) Bcen2424_4325 ? Bcen2424_4325 ? LysR family transcriptional regulator Y Y N "Low carbon, planktonic" CBT744 RA NC_008543 "1,270,762" C?T 5.10% intergenic (+102/+9) Bcen2424_4325 ? / ? Bcen2424_4326 None LysR family transcriptional regulator/hypothetical protein N N N "Intergenic and not upstream, reads appear misaligned" "Low carbon, planktonic" CBT744 RA NC_008543 "1,270,766" C?T 5.10% intergenic (+106/+5) Bcen2424_4325 ? / ? Bcen2424_4326 None LysR family transcriptional regulator/hypothetical protein N N N "Intergenic and not upstream, reads appear misaligned" "High carbon, small bead" CBT728 RA NC_008543 "1,298,965" T?G 84.60% D62A (GAC?GCC)  Bcen2424_4356 ? Bcen2424_4356 ? response regulator receiver protein Y Y N "High carbon, small bead" CBT729 RA NC_008543 "1,299,968" ?1 bp 5.60% coding (333/978 nt) Bcen2424_4357 ? Bcen2424_4357 ? ornithine cyclodeaminase Y Y N Should be 3bp deletion "High carbon, small bead" CBT729 RA NC_008543 "1,299,969" ?1 bp 5.60% coding (332/978 nt) Bcen2424_4357 ? Bcen2424_4357 ? ornithine cyclodeaminase N N N Part of another mutation Should be 3bp deletion "High carbon, small bead" CBT729 RA NC_008543 "1,299,970" ?1 bp 5.60% coding (331/978 nt) Bcen2424_4357 ? Bcen2424_4357 ? ornithine cyclodeaminase N N N Part of another mutation Should be 3bp deletion "Low carbon, large bead" CBT730 RA NC_008543 "1,306,330" G?A 5.50% A848T (GCC?ACC)  Bcen2424_4361 ? Bcen2424_4361 ? peptidoglycan glycosyltransferase Y Y N "High carbon, large bead" CBT718 RA NC_008543 "1,308,703" ?1 bp 7.10% intergenic (+69/+44) Bcen2424_4364 ? / ? Bcen2424_4365 None hypothetical protein/two component LuxR family transcriptional regulator Y N N Intergenic and not upstream "High carbon, large bead" CBT718 RA NC_008543 "1,308,704" ?1 bp 7.10% intergenic (+70/+43) Bcen2424_4364 ? / ? Bcen2424_4365 None hypothetical protein/two component LuxR family transcriptional regulator N N N "Part of another mutation, Intergenic and not upstream" "High carbon, small bead" CBT724 RA NC_008543 "1,319,860" ?1 bp 6.20% coding (625/1800 nt) Bcen2424_4375 ? Bcen2424_4375 ? methyl?accepting chemotaxis sensory transducer Y Y N "High carbon, planktonic" CBT739 RA NC_008543 "1,350,700" C?T 5.40% P184S (CCG?TCG)  Bcen2424_4407 ? Bcen2424_4407 ? isoquinoline 1?oxidoreductase Y Y N "High carbon, small bead" CBT727 RA NC_008543 "1,376,284" T?C 6.20% F25S (TTC?TCC)  Bcen2424_4429 ? Bcen2424_4429 ? luciferase family protein Y Y N "High carbon, small bead" CBT724 RA NC_008543 "1,411,150" G?T 16.20% G162G (GGC?GGA)  Bcen2424_4455 ? Bcen2424_4455 ? triple helix repeat?containing collagen N N Y "Synonymous, reads appear misaligned" "Low carbon, large bead" CBT734 RA NC_008543 "1,411,168" G?T 6.70% G156G (GGC?GGA)  Bcen2424_4455 ? Bcen2424_4455 ? triple helix repeat?containing collagen N N Y "Synonymous, reads appear misaligned" "High carbon, small bead" CBT724 RA NC_008543 "1,456,998" C?T 5.20% R829H (CGC?CAC)  Bcen2424_4504 ? Bcen2424_4504 ? molybdopterin oxidoreductase Y Y N "High carbon, small bead" CBT727 RA NC_008543 "1,482,933" ?1 bp 7.00% coding (668/981 nt) Bcen2424_4526 ? Bcen2424_4526 ? aldo/keto reductase Y Y N "Low carbon, planktonic" CBT747 RA NC_008543 "1,487,518" G?C 29.50% S274W (TCG?TGG)  Bcen2424_4530 ? Bcen2424_4530 ? 3?hydroxy?acyl?CoA dehydrogenase Y Y N "High carbon, large bead" CBT721 RA NC_008543 "1,524,140" ?1 bp 6.20% coding (1952/2244 nt) Bcen2424_4556 ? Bcen2424_4556 ? penicillin?binding protein 1C Y Y N Should be 2 bp deletion "High carbon, large bead" CBT721 RA NC_008543 "1,524,141" ?1 bp 6.10% coding (1953/2244 nt) Bcen2424_4556 ? Bcen2424_4556 ? penicillin?binding protein 1C N N N Part of another mutation Should be 2 bp deletion "High carbon, large bead" CBT718 RA NC_008543 "1,548,389" C?T 6.90% D324D (GAC?GAT)  Bcen2424_4579 ? Bcen2424_4579 ? oxidoreductase alpha (molybdopterin) subunit Y N Y Synonymous "Low carbon, large bead" CBT730 RA NC_008543 "1,578,616" C?T 5.40% G82S (GGC?AGC)  Bcen2424_4604 ? Bcen2424_4604 ? hypothetical protein N N N Only at ends of reads "Low carbon, planktonic" CBT742 RA NC_008543 "1,618,585" C?T 5.30% intergenic (+574/?83) Bcen2424_4638 ? / ? Bcen2424_4639 Bcen2424_4639 ? two component LuxR family transcriptional regulator/sugar transporter N N N Only at ends of reads "High carbon, small bead" CBT725 RA NC_008543 "1,622,558" A?C 6.30% L625R (CTC?CGC)  Bcen2424_4642 ? Bcen2424_4642 ? hypothetical protein Y Y N "High carbon, small bead" CBT725 JC NC_008543 "1,633,680" #NAME? 6.00% coding (380/732 nt) Bcen2424_4651 ? Bcen2424_4651 ? extracellular solute?binding protein N N N Only at ends of reads "High carbon, planktonic" CBT739 RA NC_008543 "1,646,214" T?C 5.90% L208P (CTG?CCG)  Bcen2424_4663 ? Bcen2424_4663 ? response regulator receiver protein Y Y N "High carbon, planktonic" CBT739 RA NC_008543 "1,657,155" ?1 bp 5.10% coding (171/969 nt) Bcen2424_4672 ? Bcen2424_4672 ? agmatinase Y Y N "High carbon, small bead" CBT724 RA NC_008543 "1,695,171" C?T 5.80% A51A (GCG?GCA)  Bcen2424_4708 ? Bcen2424_4708 ? short chain dehydrogenase Y N Y Synonymous "High carbon, large bead" CBT720 RA NC_008543 "1,710,578" C?T 64.70% G234G (GGG?GGA)  Bcen2424_4724 ? Bcen2424_4724 ? LuxR family transcriptional regulator Y N Y Synonymous "High carbon, planktonic" CBT738 RA NC_008543 "1,710,667" G?A 35.40% R205C (CGC?TGC)  Bcen2424_4724 ? Bcen2424_4724 ? LuxR family transcriptional regulator Y Y N "High carbon, planktonic" CBT736 RA NC_008543 "1,710,744" C?T 58.10% R179H (CGC?CAC)  Bcen2424_4724 ? Bcen2424_4724 ? LuxR family transcriptional regulator Y Y N "High carbon, planktonic" CBT737 RA NC_008543 "1,710,751" T?G 42.10% T177P (ACC?CCC)  Bcen2424_4724 ? Bcen2424_4724 ? LuxR family transcriptional regulator Y Y N "High carbon, planktonic" CBT737 RA NC_008543 "1,710,850" ?1 bp 6.30% coding (430/720 nt) Bcen2424_4724 ? Bcen2424_4724 ? LuxR family transcriptional regulator Y Y N "Not on same background as E141K, also not on background ofT177P, though not much evidence" "Low carbon, planktonic" CBT747 RA NC_008543 "1,710,858" T?A 25.00% E141V (GAG?GTG)  Bcen2424_4724 ? Bcen2424_4724 ? LuxR family transcriptional regulator Y Y N "High carbon, planktonic" CBT737 RA NC_008543 "1,710,859" C?T 24.60% E141K (GAG?AAG)  Bcen2424_4724 ? Bcen2424_4724 ? LuxR family transcriptional regulator Y Y N Not on same background as 1bp deletion or T177P "Low carbon, planktonic" CBT744 RA NC_008543 "1,710,900" A?T 100% L127Q (CTG?CAG)  Bcen2424_4724 ? Bcen2424_4724 ? LuxR family transcriptional regulator Y Y N "Low carbon, planktonic" CBT746 RA NC_008543 "1,710,900" A?T 90.00% L127Q (CTG?CAG)  Bcen2424_4724 ? Bcen2424_4724 ? LuxR family transcriptional regulator Y Y N "High carbon, planktonic" CBT736 JC NC_008543 "1,710,933" #NAME? 6.70% coding (347/720 nt) Bcen2424_4724 ? Bcen2424_4724 ? LuxR family transcriptional regulator Y Y N "Low carbon, planktonic" CBT745 RA NC_008543 "1,711,047" A?G 100% V78A (GTT?GCT)  Bcen2424_4724 ? Bcen2424_4724 ? LuxR family transcriptional regulator Y Y N "Low carbon, planktonic" CBT743 RA NC_008543 "1,711,068" T?C 85.60% Y71C (TAC?TGC)  Bcen2424_4724 ? Bcen2424_4724 ? LuxR family transcriptional regulator Y Y N "High carbon, planktonic" CBT737 JC NC_008543 "1,711,234" #NAME? 7.70% coding (46/720 nt) Bcen2424_4724 ? Bcen2424_4724 ? LuxR family transcriptional regulator Y Y N "High carbon, large bead" CBT718 RA NC_008543 "1,766,088" G?T 5.80% intergenic (?197/+43) Bcen2424_4779 ? / ? Bcen2424_4780 None amino acid permease/hypothetical protein Y N N Intergenic and not upstream "High carbon, large bead" CBT718 RA NC_008543 "1,773,120" G?A 5.90% R225H (CGC?CAC)  Bcen2424_4785 ? Bcen2424_4785 ? LysR family transcriptional regulator Y Y N "High carbon, planktonic" CBT738 RA NC_008543 "1,789,361" G?A 42.20% L197L (CTG?TTG)  Bcen2424_4802 ? Bcen2424_4802 ? hypothetical protein Y N Y Synonymous "High carbon, planktonic" CBT740 RA NC_008543 "1,817,372" G?A 10.70% A310A (GCC?GCT)  Bcen2424_4829 ? Bcen2424_4829 ? hypothetical protein Y N Y Synonymous "High carbon, planktonic" CBT741 RA NC_008543 "1,833,000" G?A 7.40% R1032Q (CGG?CAG)  Bcen2424_4842 ? Bcen2424_4842 ? hypothetical protein Y Y N "Low carbon, large bead" CBT734 RA NC_008543 "1,834,348" C?T 8.00% D1481D (GAC?GAT)  Bcen2424_4842 ? Bcen2424_4842 ? hypothetical protein Y N Y Synonymous "High carbon, planktonic" CBT739 RA NC_008543 "1,846,669" C?A 100% A32A (GCG?GCT)  Bcen2424_4844 ? Bcen2424_4844 ? type III secretion exporter Y N Y Synonymous "High carbon, small bead" CBT726 RA NC_008543 "1,848,061" G?A 6.30% D68D (GAC?GAT)  Bcen2424_4846 ? Bcen2424_4846 ? mucin?associated surface protein Y N Y Synonymous "High carbon, large bead" CBT720 RA NC_008543 "1,904,674" G?T 5.20% A52E (GCG?GAG)  Bcen2424_4903 ? Bcen2424_4903 ? FAD dependent oxidoreductase Y Y N "High carbon, planktonic" CBT739 RA NC_008543 "1,923,603" G?A 9.50% R132H (CGC?CAC)  Bcen2424_4925 ? Bcen2424_4925 ? periplasmic sensor signal transduction histidine kinase Y Y N "Low carbon, large bead" CBT733 RA NC_008543 "1,931,067" G?T 5.30% R322S (CGC?AGC)  Bcen2424_4932 ? Bcen2424_4932 ? "amylo?alpha?1,6?glucosidase" N N N Only at ends of reads "Low carbon, planktonic" CBT742 JC NC_008543 "1,932,530" ?8 bp 16.40% coding (6690?6697/7041 nt) Bcen2424_4933 ? Bcen2424_4933 ? outer membrane autotransporter Y Y N "High carbon, large bead" CBT718 RA NC_008543 "1,967,172" C?T 5.90% V180V (GTG?GTA)  Bcen2424_4959 ? Bcen2424_4959 ? enoyl?CoA hydratase Y N Y Synonymous "High carbon, small bead" CBT727 RA NC_008543 "1,968,354" ?1 bp 5.50% coding (257/900 nt) Bcen2424_4960 ? Bcen2424_4960 ? 3?hydroxyisobutyrate dehydrogenase Y Y N Looks like a 2 bp deletion to me "High carbon, small bead" CBT727 RA NC_008543 "1,990,558" A?T 5.90% Q431L (CAG?CTG)  Bcen2424_4979 ? Bcen2424_4979 ? Fis family GAF modulated sigma54 specific transcriptional regulator Y Y N "High carbon, small bead" CBT729 JC NC_008543 "2,121,829" #NAME? 16.30% coding (717/1191 nt) Bcen2424_5091 ? Bcen2424_5091 ? secretion protein HlyD family protein N N N Only at ends of reads "High carbon, planktonic" CBT739 RA NC_008543 "2,148,869" ?1 bp 5.60% coding (58/741 nt) Bcen2424_5114 ? Bcen2424_5114 ? alpha/beta hydrolase Y Y N Should be 3 bp deletion "High carbon, planktonic" CBT739 RA NC_008543 "2,148,870" ?1 bp 5.60% coding (59/741 nt) Bcen2424_5114 ? Bcen2424_5114 ? alpha/beta hydrolase N N N Part of another mutation Should be 3 bp deletion "High carbon, planktonic" CBT739 RA NC_008543 "2,148,871" ?1 bp 5.60% coding (60/741 nt) Bcen2424_5114 ? Bcen2424_5114 ? alpha/beta hydrolase N N N Part of another mutation Should be 3 bp deletion "High carbon, planktonic" CBT741 RA NC_008543 "2,157,330" C?T 5.50% A317T (GCC?ACC)  Bcen2424_5123 ? Bcen2424_5123 ? Fis family GAF modulated sigma54 specific transcriptional regulator Y Y N "High carbon, planktonic" CBT739 RA NC_008543 "2,204,789" G?A 7.80% V40V (GTG?GTA)  Bcen2424_5156 ? Bcen2424_5156 ? Hrp?dependent type III effector protein Y N Y Synonymous "High carbon, planktonic" CBT737 RA NC_008543 "2,248,401" G?A 6.00% R339Q (CGG?CAG)  Bcen2424_5196 ? Bcen2424_5196 ? FAD?dependent pyridine nucleotide?disulfide oxidoreductase Y Y N "Low carbon, planktonic" CBT744 JC NC_008543 "2,275,882" #NAME? 10.90% intergenic (?291/?748) Bcen2424_5219 ? / ? Bcen2424_5220 None hypothetical protein/ATPase central domain?containing protein N N N "Intergenic and not upstream, Only at ends of reads" "Low carbon, large bead" CBT730 RA NC_008543 "2,281,427" C?G 100% N79K (AAC?AAG)  Bcen2424_5223 ? Bcen2424_5223 ? hemagluttinin domain?containing protein Y Y N "Low carbon, planktonic" CBT743 RA NC_008543 "2,282,837" G?C 5.00% S549S (TCG?TCC)  Bcen2424_5223 ? Bcen2424_5223 ? hemagluttinin domain?containing protein Y N Y Synonymous "Low carbon, large bead" CBT730 RA NC_008543 "2,282,948" C?T 22.00% I586I (ATC?ATT)  Bcen2424_5223 ? Bcen2424_5223 ? hemagluttinin domain?containing protein N N Y "Synonymous, only at ends of reads" "Low carbon, large bead" CBT730 RA NC_008543 "2,282,949" A?T 26.00% T587S (ACG?TCG)  Bcen2424_5223 ? Bcen2424_5223 ? hemagluttinin domain?containing protein N N N "Synonymous, only at ends of reads" "Low carbon, large bead" CBT735 RA NC_008543 "2,283,365" G?T 7.00% A725A (GCG?GCT)  Bcen2424_5223 ? Bcen2424_5223 ? hemagluttinin domain?containing protein N N Y "Synonymous, reads appear misaligned" "High carbon, planktonic" CBT740 RA NC_008543 "2,283,365" G?T 5.50% A725A (GCG?GCT)  Bcen2424_5223 ? Bcen2424_5223 ? hemagluttinin domain?containing protein N N Y "Synonymous, reads appear misaligned" "High carbon, large bead" CBT722 RA NC_008543 "2,283,473" C?G 5.20% L761L (CTC?CTG)  Bcen2424_5223 ? Bcen2424_5223 ? hemagluttinin domain?containing protein N N Y Synonymous "Low carbon, planktonic" CBT744 RA NC_008543 "2,283,524" G?A 5.30% G778G (GGG?GGA)  Bcen2424_5223 ? Bcen2424_5223 ? hemagluttinin domain?containing protein N N Y "Synonymous, reads appear misaligned" "High carbon, large bead" CBT723 RA NC_008543 "2,283,596" T?C 5.80% S802S (AGT?AGC)  Bcen2424_5223 ? Bcen2424_5223 ? hemagluttinin domain?containing protein N N Y "Synonymous, reads appear misaligned" "Low carbon, large bead" CBT734 RA NC_008543 "2,283,596" T?C 5.50% S802S (AGT?AGC)  Bcen2424_5223 ? Bcen2424_5223 ? hemagluttinin domain?containing protein N N Y "Synonymous, reads appear misaligned" "Low carbon, planktonic" CBT745 RA NC_008543 "2,283,596" T?C 5.10% S802S (AGT?AGC)  Bcen2424_5223 ? Bcen2424_5223 ? hemagluttinin domain?containing protein N N Y "Synonymous, reads appear misaligned" "High carbon, large bead" CBT721 RA NC_008543 "2,283,707" C?G 5.60% L839L (CTC?CTG)  Bcen2424_5223 ? Bcen2424_5223 ? hemagluttinin domain?containing protein N N Y "Synonymous, ends of reads only" "Low carbon, large bead" CBT732 RA NC_008543 "2,283,773" G?C 6.30% L861L (CTG?CTC)  Bcen2424_5223 ? Bcen2424_5223 ? hemagluttinin domain?containing protein N N Y "Synonymous, reads appear misaligned" "High carbon, large bead" CBT718 RA NC_008543 "2,283,776" T?C 14.40% S862S (AGT?AGC)  Bcen2424_5223 ? Bcen2424_5223 ? hemagluttinin domain?containing protein N N Y "Synonymous, misaligned" "High carbon, large bead" CBT721 RA NC_008543 "2,283,776" T?C 7.30% S862S (AGT?AGC)  Bcen2424_5223 ? Bcen2424_5223 ? hemagluttinin domain?containing protein N N Y "Synonymous, ends of reads only" "High carbon, large bead" CBT723 RA NC_008543 "2,283,776" T?C 9.20% S862S (AGT?AGC)  Bcen2424_5223 ? Bcen2424_5223 ? hemagluttinin domain?containing protein N N Y "Synonymous, reads appear misaligned" "High carbon, small bead" CBT724 RA NC_008543 "2,283,776" T?C 13.40% S862S (AGT?AGC)  Bcen2424_5223 ? Bcen2424_5223 ? hemagluttinin domain?containing protein N N Y Synonymous "High carbon, small bead" CBT726 RA NC_008543 "2,283,776" T?C 7.30% S862S (AGT?AGC)  Bcen2424_5223 ? Bcen2424_5223 ? hemagluttinin domain?containing protein N N Y Synonymous "Low carbon, large bead" CBT731 RA NC_008543 "2,283,776" T?C 6.60% S862S (AGT?AGC)  Bcen2424_5223 ? Bcen2424_5223 ? hemagluttinin domain?containing protein N N Y "Synonymous, reads appear misaligned" "Low carbon, large bead" CBT732 RA NC_008543 "2,283,776" T?C 9.80% S862S (AGT?AGC)  Bcen2424_5223 ? Bcen2424_5223 ? hemagluttinin domain?containing protein N N Y "Synonymous, reads appear misaligned" "Low carbon, large bead" CBT733 RA NC_008543 "2,283,776" T?C 6.50% S862S (AGT?AGC)  Bcen2424_5223 ? Bcen2424_5223 ? hemagluttinin domain?containing protein N N Y "Synonymous, reads appear misaligned" "Low carbon, large bead" CBT734 RA NC_008543 "2,283,776" T?C 7.90% S862S (AGT?AGC)  Bcen2424_5223 ? Bcen2424_5223 ? hemagluttinin domain?containing protein N N Y "Synonymous, reads appear misaligned" "Low carbon, large bead" CBT735 RA NC_008543 "2,283,776" T?C 6.70% S862S (AGT?AGC)  Bcen2424_5223 ? Bcen2424_5223 ? hemagluttinin domain?containing protein N N Y "Synonymous, reads appear misaligned" "High carbon, planktonic" CBT736 RA NC_008543 "2,283,776" T?C 7.20% S862S (AGT?AGC)  Bcen2424_5223 ? Bcen2424_5223 ? hemagluttinin domain?containing protein N N Y "Synonymous, reads appear misaligned" "High carbon, planktonic" CBT737 RA NC_008543 "2,283,776" T?C 6.40% S862S (AGT?AGC)  Bcen2424_5223 ? Bcen2424_5223 ? hemagluttinin domain?containing protein N N Y "Synonymous, reads appear misaligned" "High carbon, planktonic" CBT740 RA NC_008543 "2,283,776" T?C 6.60% S862S (AGT?AGC)  Bcen2424_5223 ? Bcen2424_5223 ? hemagluttinin domain?containing protein N N Y "Synonymous, reads appear misaligned" "High carbon, planktonic" CBT741 RA NC_008543 "2,283,776" T?C 13.30% S862S (AGT?AGC)  Bcen2424_5223 ? Bcen2424_5223 ? hemagluttinin domain?containing protein N N Y "Synonymous, reads appear misaligned" "Low carbon, planktonic" CBT745 RA NC_008543 "2,283,776" T?C 6.50% S862S (AGT?AGC)  Bcen2424_5223 ? Bcen2424_5223 ? hemagluttinin domain?containing protein N N Y "Synonymous, reads appear misaligned" "Low carbon, planktonic" CBT747 RA NC_008543 "2,283,776" T?C 7.10% S862S (AGT?AGC)  Bcen2424_5223 ? Bcen2424_5223 ? hemagluttinin domain?containing protein N N Y "Synonymous, reads appear misaligned" "Low carbon, planktonic" CBT744 RA NC_008543 "2,283,797" G?C 5.50% T869T (ACG?ACC)  Bcen2424_5223 ? Bcen2424_5223 ? hemagluttinin domain?containing protein N N Y "Synonymous, reads appear misaligned" "Low carbon, large bead" CBT732 RA NC_008543 "2,285,063" C?G 11.20% L1291L (CTC?CTG)  Bcen2424_5223 ? Bcen2424_5223 ? hemagluttinin domain?containing protein N N Y "Synonymous, reads appear misaligned" "High carbon, large bead" CBT721 RA NC_008543 "2,285,780" C?G 7.70% S1530S (TCC?TCG)  Bcen2424_5223 ? Bcen2424_5223 ? hemagluttinin domain?containing protein N N Y "Synonymous, reads misaligned" "Low carbon, large bead" CBT730 RA NC_008543 "2,285,780" C?G 14.80% S1530S (TCC?TCG)  Bcen2424_5223 ? Bcen2424_5223 ? hemagluttinin domain?containing protein N N Y "Synonymous, reads appear misaligned" "Low carbon, large bead" CBT732 RA NC_008543 "2,285,780" C?G 10.50% S1530S (TCC?TCG)  Bcen2424_5223 ? Bcen2424_5223 ? hemagluttinin domain?containing protein N N Y "Synonymous, reads appear misaligned" "High carbon, planktonic" CBT737 RA NC_008543 "2,285,780" C?G 5.80% S1530S (TCC?TCG)  Bcen2424_5223 ? Bcen2424_5223 ? hemagluttinin domain?containing protein N N Y "Synonymous, reads appear misaligned" "Low carbon, planktonic" CBT744 RA NC_008543 "2,285,780" C?G 5.50% S1530S (TCC?TCG)  Bcen2424_5223 ? Bcen2424_5223 ? hemagluttinin domain?containing protein N N Y "Synonymous, reads appear misaligned" "Low carbon, planktonic" CBT747 RA NC_008543 "2,285,780" C?G 10.90% S1530S (TCC?TCG)  Bcen2424_5223 ? Bcen2424_5223 ? hemagluttinin domain?containing protein N N Y "Synonymous, reads appear misaligned" "High carbon, small bead" CBT728 RA NC_008543 "2,285,885" G?T 10.80% T1565T (ACG?ACT)  Bcen2424_5223 ? Bcen2424_5223 ? hemagluttinin domain?containing protein N N Y "Synonymous, reads appear misaligned" "High carbon, small bead" CBT726 RA NC_008543 "2,285,915" C?G 5.80% L1575L (CTC?CTG)  Bcen2424_5223 ? Bcen2424_5223 ? hemagluttinin domain?containing protein N N Y Synonymous "High carbon, small bead" CBT728 RA NC_008543 "2,286,086" C?T 5.10% A1632A (GCC?GCT)  Bcen2424_5223 ? Bcen2424_5223 ? hemagluttinin domain?containing protein N N Y "Synonymous, reads appear misaligned" "High carbon, small bead" CBT728 RA NC_008543 "2,286,092" T?C 5.80% S1634S (AGT?AGC)  Bcen2424_5223 ? Bcen2424_5223 ? hemagluttinin domain?containing protein N N Y "Synonymous, reads appear misaligned" "Low carbon, large bead" CBT735 RA NC_008543 "2,286,695" G?T 6.10% T1835T (ACG?ACT)  Bcen2424_5223 ? Bcen2424_5223 ? hemagluttinin domain?containing protein N N Y "Synonymous, reads appear misaligned" "Low carbon, large bead" CBT733 RA NC_008543 "2,286,801" G?T 11.90% D1871Y (GAT?TAT)  Bcen2424_5223 ? Bcen2424_5223 ? hemagluttinin domain?containing protein N N N Associated with reads w/ poor quality "High carbon, large bead" CBT721 RA NC_008543 "2,286,857" C?G 6.60% T1889T (ACC?ACG)  Bcen2424_5223 ? Bcen2424_5223 ? hemagluttinin domain?containing protein N N Y "Synonymous, reads misaligned" "High carbon, small bead" CBT724 RA NC_008543 "2,286,923" C?A 9.00% T1911T (ACC?ACA)  Bcen2424_5223 ? Bcen2424_5223 ? hemagluttinin domain?containing protein N N Y Synonymous "High carbon, small bead" CBT724 RA NC_008543 "2,286,956" T?C 8.80% S1922S (AGT?AGC)  Bcen2424_5223 ? Bcen2424_5223 ? hemagluttinin domain?containing protein N N Y Synonymous "High carbon, large bead" CBT720 RA NC_008543 "2,287,373" C?G 5.80% L2061L (CTC?CTG)  Bcen2424_5223 ? Bcen2424_5223 ? hemagluttinin domain?containing protein N N N Associated with reads w/ poor quality "High carbon, small bead" CBT724 RA NC_008543 "2,287,373" C?G 8.10% L2061L (CTC?CTG)  Bcen2424_5223 ? Bcen2424_5223 ? hemagluttinin domain?containing protein N N Y Synonymous "High carbon, small bead" CBT724 RA NC_008543 "2,287,430" C?G 8.20% S2080S (TCC?TCG)  Bcen2424_5223 ? Bcen2424_5223 ? hemagluttinin domain?containing protein N N Y Synonymous "High carbon, small bead" CBT725 RA NC_008543 "2,287,430" C?G 5.40% S2080S (TCC?TCG)  Bcen2424_5223 ? Bcen2424_5223 ? hemagluttinin domain?containing protein N N Y Synonymous "Low carbon, planktonic" CBT746 RA NC_008543 "2,287,430" C?G 6.50% S2080S (TCC?TCG)  Bcen2424_5223 ? Bcen2424_5223 ? hemagluttinin domain?containing protein Y N Y Synonymous "Low carbon, large bead" CBT734 RA NC_008543 "2,294,843" C?T 9.50% L43F (CTC?TTC)  Bcen2424_5229 ? Bcen2424_5229 ? FkbM family methyltransferase Y Y N Never on same background as A64T "Low carbon, large bead" CBT734 RA NC_008543 "2,294,906" G?A 26.50% A64T (GCG?ACG)  Bcen2424_5229 ? Bcen2424_5229 ? FkbM family methyltransferase Y Y N "Low carbon, large bead" CBT734 RA NC_008543 "2,295,222" A?T 8.40% K169I (AAA?ATA)  Bcen2424_5229 ? Bcen2424_5229 ? FkbM family methyltransferase Y Y N "Low carbon, large bead" CBT734 RA NC_008543 "2,295,766" ?1 bp 19.70% coding (1050/1974 nt) Bcen2424_5229 ? Bcen2424_5229 ? FkbM family methyltransferase Y Y N "Low carbon, large bead" CBT734 JC NC_008543 "2,295,777" ?26 bp 13.10% coding (1061?1086/1974 nt) Bcen2424_5229 ? Bcen2424_5229 ? FkbM family methyltransferase Y Y N "High carbon, planktonic" CBT741 RA NC_008543 "2,304,979" T?C 5.10% T501A (ACG?GCG)  Bcen2424_5237 ? Bcen2424_5237 ? carbamoyl?phosphate synthase subunit L Y Y N All reads with this mutation also contain a second mutation nearby "High carbon, large bead" CBT722 RA NC_008543 "2,312,869" G?A 28.70% K356K (AAG?AAA)  Bcen2424_5243 ? Bcen2424_5243 ? Rieske (2Fe?2S) domain?containing protein Y N Y Synonymous "High carbon, planktonic" CBT739 RA NC_008543 "2,320,483" C?T 7.80% R128R (CGG?CGA)  Bcen2424_5248 ? Bcen2424_5248 ? porin Y N Y Synonymous "High carbon, small bead" CBT725 RA NC_008543 "2,322,007" ?1 bp 5.00% intergenic (+71/?250) Bcen2424_5249 ? / ? Bcen2424_5250 None IS605 family transposase OrfB/lysine exporter protein LysE/YggA Y N N Intergenic and not upstream "High carbon, small bead" CBT725 RA NC_008543 "2,322,008" ?1 bp 5.00% intergenic (+72/?249) Bcen2424_5249 ? / ? Bcen2424_5250 None IS605 family transposase OrfB/lysine exporter protein LysE/YggA N N N "Intergenic and not upstream, should be 2bp deletion" "Low carbon, large bead" CBT734 RA NC_008543 "2,386,846" C?T 26.20% G170D (GGC?GAC)  Bcen2424_5298 ? Bcen2424_5298 ? binding?protein?dependent transport systems inner membrane component Y Y N "Low carbon, large bead" CBT734 RA NC_008543 "2,411,234" G?A 6.80% L124L (CTC?CTT)  Bcen2424_5321 ? Bcen2424_5321 ? aldehyde dehydrogenase Y N Y Synonymous "High carbon, large bead" CBT722 RA NC_008543 "2,567,818" G?T 5.60% E209D (GAG?GAT)  Bcen2424_5469 ? Bcen2424_5469 ? major facilitator transporter Y Y N "High carbon, planktonic" CBT739 RA NC_008543 "2,580,587" C?T 6.30% G134G (GGG?GGA)  Bcen2424_5484 ? Bcen2424_5484 ? hypothetical protein Y N Y Synonymous "Low carbon, planktonic" CBT746 RA NC_008543 "2,585,034" C?T 5.20% S17F (TCC?TTC)  Bcen2424_5489 ? Bcen2424_5489 ? LysR family transcriptional regulator N N N Only at ends of reads "High carbon, large bead" CBT718 JC NC_008543 "2,597,210" ?56 bp 13.80% intergenic (+59/+90) Bcen2424_5494 ? / ? Bcen2424_5495 None heavy metal translocating P?type ATPase/N?acetyltransferase GCN5 Y N N Intergenic and not upstream "Low carbon, large bead" CBT733 JC NC_008543 "2,597,217" ?49 bp 17.30% intergenic (+66/+90) Bcen2424_5494 ? / ? Bcen2424_5495 None heavy metal translocating P?type ATPase/N?acetyltransferase GCN5 Y N N Intergenic and not upstream "Low carbon, large bead" CBT735 JC NC_008543 "2,597,217" ?49 bp 34.80% intergenic (+66/+90) Bcen2424_5494 ? / ? Bcen2424_5495 None heavy metal translocating P?type ATPase/N?acetyltransferase GCN5 Y N N Intergenic and not upstream "High carbon, planktonic" CBT737 JC NC_008543 "2,597,217" ?49 bp 18.20% intergenic (+66/+90) Bcen2424_5494 ? / ? Bcen2424_5495 None heavy metal translocating P?type ATPase/N?acetyltransferase GCN5 Y N N Intergenic and not upstream "Low carbon, planktonic" CBT743 JC NC_008543 "2,597,217" ?49 bp 45.80% intergenic (+66/+90) Bcen2424_5494 ? / ? Bcen2424_5495 None heavy metal translocating P?type ATPase/N?acetyltransferase GCN5 Y N N Intergenic and not upstream "High carbon, small bead" CBT727 RA NC_008543 "2,600,369" C?A 5.30% S44S (TCG?TCT)  Bcen2424_5498 ? Bcen2424_5498 ? MgtC/SapB transporter Y N Y Synonymous "High carbon, small bead" CBT727 RA NC_008543 "2,643,009" A?T 6.30% N78Y (AAC?TAC)  Bcen2424_5535 ? Bcen2424_5535 ? hypothetical protein Y Y N "High carbon, planktonic" CBT739 RA NC_008543 "2,647,378" C?A 6.60% E174* (GAA?TAA)  Bcen2424_5539 ? Bcen2424_5539 ? oligopeptide/dipeptide ABC transporter ATPase Y Y N "High carbon, planktonic" CBT737 RA NC_008543 "2,676,815" G?A 12.30% A304V (GCT?GTT)  Bcen2424_5567 ? Bcen2424_5567 ? phage integrase family protein Y Y N "High carbon, small bead" CBT727 RA NC_008543 "2,715,698" T?C 5.40% C47R (TGC?CGC)  Bcen2424_5603 ? Bcen2424_5603 ? LysR family transcriptional regulator Y Y N "High carbon, planktonic" CBT739 RA NC_008543 "2,728,336" T?C 5.30% L168P (CTG?CCG)  Bcen2424_5616 ? Bcen2424_5616 ? histidine utilization repressor Y Y N "Low carbon, planktonic" CBT747 RA NC_008543 "2,771,875" ?1 bp 5.10% coding (588/1056 nt) Bcen2424_5655 ? Bcen2424_5655 ? LacI family transcriptional regulator Y Y N Should be 3 bp deletion "Low carbon, planktonic" CBT747 RA NC_008543 "2,771,876" ?1 bp 5.10% coding (587/1056 nt) Bcen2424_5655 ? Bcen2424_5655 ? LacI family transcriptional regulator N N N Part of another mutation Should be 3 bp deletion "Low carbon, planktonic" CBT747 RA NC_008543 "2,771,877" ?1 bp 5.10% coding (586/1056 nt) Bcen2424_5655 ? Bcen2424_5655 ? LacI family transcriptional regulator N N N Part of another mutation Should be 3 bp deletion "High carbon, small bead" CBT727 RA NC_008543 "2,775,235" C?T 7.90% P473S (CCG?TCG)  Bcen2424_5657 ? Bcen2424_5657 ? beta?galactosidase Y Y N "High carbon, small bead" CBT727 RA NC_008543 "2,834,009" G?T 8.20% A61E (GCG?GAG)  Bcen2424_5713 ? Bcen2424_5713 ? 3?hydroxybutyrate dehydrogenase N N N Reads appear to be misaligned "High carbon, small bead" CBT726 RA NC_008543 "2,957,269" C?T 71.20% A261V (GCG?GTG)  Bcen2424_5828 ? Bcen2424_5828 ? FAD dependent oxidoreductase Y Y N "High carbon, large bead" CBT720 RA NC_008543 "1,039,619:1" #NAME? 6.00% intergenic (?137/+46) Bcen2424_4131 ? / ? Bcen2424_4132 Bcen2424_4131 ? "helix?hairpin?helix DNA?binding protein/RNA polymerase, sigma 38 subunit, RpoS" Y Y N "High carbon, large bead" CBT722 RA NC_008543 "1,687,245:1" +C 5.00% coding (101/963 nt) Bcen2424_4700 ? Bcen2424_4700 ? glyoxalase/bleomycin resistance protein/dioxygenase Y Y N Should be 2 bp deletion "High carbon, large bead" CBT722 RA NC_008543 "1,687,245:2" #NAME? 5.00% coding (101/963 nt) Bcen2424_4700 ? Bcen2424_4700 ? glyoxalase/bleomycin resistance protein/dioxygenase N N N Part of another mutation Should be 2 bp deletion "High carbon, large bead" CBT720 RA NC_008543 "341,826:1" #NAME? 5.90% coding (1084/1278 nt) Bcen2424_3503 ? Bcen2424_3503 ? epocide hydrolase domain?containing protein Y Y N Should be 2 bp deletion "High carbon, large bead" CBT720 RA NC_008543 "341,826:2" +C 5.90% coding (1084/1278 nt) Bcen2424_3503 ? Bcen2424_3503 ? epocide hydrolase domain?containing protein N N N Part of another mutation Should be 2 bp deletion "High carbon, planktonic" CBT740 JC NC_008544 "3,347" #NAME? 10.30% coding (492/1380 nt) Bcen2424_5871 ? Bcen2424_5871 ? hypothetical protein N N N Only at ends of reads "High carbon, small bead" CBT727 RA NC_008544 "12,059" G?A 5.90% G279D (GGC?GAC)  Bcen2424_5879 ? Bcen2424_5879 ? phosphoribosylglycinamide synthetase Y Y N "High carbon, small bead" CBT724 RA NC_008544 "27,640" ?1 bp 5.50% coding (550/837 nt) Bcen2424_5896 ? Bcen2424_5896 ? shikimate 5?dehydrogenase Y Y N "High carbon, large bead" CBT718 RA NC_008544 "58,773" G?A 5.70% A99V (GCG?GTG)  Bcen2424_5923 ? Bcen2424_5923 ? biotin carboxylase Y Y N "High carbon, planktonic" CBT738 RA NC_008544 "90,369" G?A 35.80% intergenic (+19/?240) Bcen2424_5956 ? / ? Bcen2424_5957 None hypothetical protein/hypothetical protein Y N N Intergenic and not upstream "Low carbon, large bead" CBT732 RA NC_008544 "111,660" ?1 bp 5.90% coding (3033/5895 nt) Bcen2424_5972 ? Bcen2424_5972 ? excinuclease ABC subunit A Y Y N Should be 2 bp deletion "Low carbon, large bead" CBT732 RA NC_008544 "111,661" ?1 bp 5.90% coding (3032/5895 nt) Bcen2424_5972 ? Bcen2424_5972 ? excinuclease ABC subunit A N N N Part of another mutation Should be 2 bp deletion "High carbon, small bead" CBT727 RA NC_008544 "112,030" G?A 5.80% T888I (ACC?ATC)  Bcen2424_5972 ? Bcen2424_5972 ? excinuclease ABC subunit A Y Y N "Low carbon, planktonic" CBT742 RA NC_008544 "126,623" G?C 6.50% T680T (ACC?ACG)  Bcen2424_5983 ? Bcen2424_5983 ? YadA domain?containing protein N N Y "Synonymous, reads appear misaligned" "High carbon, planktonic" CBT741 RA NC_008544 "128,052" T?C 5.20% Y204C (TAC?TGC)  Bcen2424_5983 ? Bcen2424_5983 ? YadA domain?containing protein Y Y N "Low carbon, large bead" CBT731 RA NC_008544 "142,951" G?A 5.70% P96P (CCG?CCA)  Bcen2424_5997 ? Bcen2424_5997 ? general substrate transporter Y N Y Synonymous "High carbon, planktonic" CBT739 RA NC_008544 "167,028" ?1 bp 5.10% coding (378/663 nt) Bcen2424_6018 ? Bcen2424_6018 ? methyltransferase type 11 Y Y N "Low carbon, planktonic" CBT742 RA NC_008544 "172,057" ?1 bp 5.30% coding (989/1419 nt) Bcen2424_6023 ? Bcen2424_6023 ? FAD linked oxidase domain?containing protein N N N Reads appear to be misaligned "High carbon, planktonic" CBT739 RA NC_008544 "198,003" C?T 6.50% R416H (CGC?CAC)  Bcen2424_6050 ? Bcen2424_6050 ? methyl?accepting chemotaxis sensory transducer Y Y N "High carbon, planktonic" CBT739 RA NC_008544 "215,191" A?G 5.80% T244A (ACG?GCG)  Bcen2424_6068 ? Bcen2424_6068 ? LysR family transcriptional regulator Y Y N "High carbon, planktonic" CBT736 RA NC_008544 "219,285" G?A 6.30% G25S (GGC?AGC)  Bcen2424_6073 ? Bcen2424_6073 ? hydrophobe/amphiphile efflux?1 (HAE1) family protein N N N Only at ends of reads "High carbon, large bead" CBT718 RA NC_008544 "338,397" C?G 5.10% G68A (GGC?GCC)  Bcen2424_6175 ? Bcen2424_6175 ? hypothetical protein Y Y N "High carbon, planktonic" CBT740 RA NC_008544 "392,577" C?G 6.20% L827V (CTG?GTG)  Bcen2424_6222 ? Bcen2424_6222 ? hypothetical protein Y Y N "High carbon, small bead" CBT727 RA NC_008544 "423,608" T?C 6.90% D113G (GAC?GGC)  Bcen2424_6244 ? Bcen2424_6244 ? "cytochrome c biogenesis protein, transmembrane region" Y Y N "High carbon, planktonic" CBT739 RA NC_008544 "503,142" G?A 6.90% C116Y (TGC?TAC)  Bcen2424_6316 ? Bcen2424_6316 ? glycoside hydrolase family protein Y Y N "Low carbon, large bead" CBT732 RA NC_008544 "540,453" ?1 bp 6.60% coding (77/2922 nt) Bcen2424_6350 ? Bcen2424_6350 ? transcriptional regulator Y Y N Should be 2 bp deletion "Low carbon, large bead" CBT732 RA NC_008544 "540,454" ?1 bp 6.60% coding (78/2922 nt) Bcen2424_6350 ? Bcen2424_6350 ? transcriptional regulator N N N Part of another mutation Should be 2 bp deletion "High carbon, small bead" CBT727 RA NC_008544 "557,506" ?1 bp 7.50% coding (960/1068 nt) Bcen2424_6361 ? Bcen2424_6361 ? secretion protein HlyD family protein Y Y N "High carbon, small bead" CBT727 RA NC_008544 "560,016" ?1 bp 5.10% coding (1507/1581 nt) Bcen2424_6362 ? Bcen2424_6362 ? major facilitator transporter Y Y N "High carbon, planktonic" CBT739 RA NC_008544 "591,964" G?A 5.90% intergenic (+13/+19) Bcen2424_6392 ? / ? Bcen2424_6393 None hypothetical protein/extracellular ligand?binding receptor Y N N Intergenic and not upstream "High carbon, planktonic" CBT739 RA NC_008544 "603,274" A?T 5.50% E446V (GAG?GTG)  Bcen2424_6401 ? Bcen2424_6401 ? AMP?dependent synthetase/ligase Y Y N "High carbon, planktonic" CBT739 RA NC_008544 "613,124" C?T 100% R56W (CGG?TGG)  Bcen2424_6411 ? Bcen2424_6411 ? ATPase Y Y N "High carbon, planktonic" CBT739 RA NC_008544 "643,589" T?A 8.00% L94H (CTC?CAC)  Bcen2424_6428 ? Bcen2424_6428 ? membrane protein Y Y N "High carbon, planktonic" CBT739 RA NC_008544 "647,871" G?A 6.30% C201Y (TGC?TAC)  Bcen2424_6432 ? Bcen2424_6432 ? FAD?dependent pyridine nucleotide?disulfide oxidoreductase Y Y N "High carbon, planktonic" CBT736 RA NC_008544 "651,950" G?T 100% P354P (CCG?CCT)  Bcen2424_6437 ? Bcen2424_6437 ? alcohol dehydrogenase Y N Y Synonymous "High carbon, small bead" CBT726 RA NC_008544 "661,238" G?A 6.00% A216A (GCG?GCA)  Bcen2424_6445 ? Bcen2424_6445 ? glycosyl transferase family protein Y N Y Synonymous "High carbon, large bead" CBT723 RA NC_008544 "671,658" C?T 5.10% A194V (GCG?GTG)  Bcen2424_6454 ? Bcen2424_6454 ? multi?sensor hybrid histidine kinase Y Y N "High carbon, large bead" CBT718 RA NC_008544 "684,219" G?A 9.60% A184A (GCC?GCT)  Bcen2424_6467 ? Bcen2424_6467 ? major facilitator transporter N N Y "Synonymous, only at ends of reads" "High carbon, planktonic" CBT739 RA NC_008544 "690,305" C?A 5.10% R187R (CGG?AGG)  Bcen2424_6477 ? Bcen2424_6477 ? RNA polymerase factor sigma?54 Y N Y Synonymous "High carbon, planktonic" CBT740 RA NC_008544 "696,494" T?A 5.10% V346E (GTG?GAG)  Bcen2424_6483 ? Bcen2424_6483 ? ATP dependent DNA ligase N N N Only at ends of reads "High carbon, large bead" CBT723 RA NC_008544 "781,604" T?G 8.90% M5R (ATG?AGG)  Bcen2424_6556 ? Bcen2424_6556 ? alkylphosphonate utilization protein PhnA Y Y N "High carbon, large bead" CBT723 RA NC_008544 "793,224" C?A 5.10% P308Q (CCG?CAG)  Bcen2424_6569 ? Bcen2424_6569 ? monooxygenase N N N Reads appear to be misaligned "Low carbon, planktonic" CBT743 RA NC_008544 "875,989" T?A 5.60% L150Q (CTG?CAG)  Bcen2424_6647 ? Bcen2424_6647 ? ABC transporter Y Y N "High carbon, small bead" CBT727 RA NC_008544 "900,614" C?T 5.40% A124T (GCA?ACA)  Bcen2424_6671 ? Bcen2424_6671 ? aldehyde dehydrogenase Y Y N "High carbon, planktonic" CBT739 RA NC_008544 "923,389" C?T 6.30% G424D (GGC?GAC)  Bcen2424_6692 ? Bcen2424_6692 ? LuxR family transcriptional regulator Y Y N "High carbon, planktonic" CBT740 RA NC_008544 "932,382" ?1 bp 5.10% coding (901/1818 nt) Bcen2424_6698 ? Bcen2424_6698 ? methyl?accepting chemotaxis sensory transducer Y Y N "High carbon, planktonic" CBT739 RA NC_008544 "960,427" C?A 21.00% V324F (GTC?TTC)  Bcen2424_6720 ? Bcen2424_6720 ? aldehyde dehydrogenase Y Y N "High carbon, small bead" CBT726 RA NC_008544 "968,340" ?1 bp 5.70% coding (664/1581 nt) Bcen2424_6728 ? Bcen2424_6728 ? hypothetical protein Y Y N Should be 2 bp deletion "Low carbon, large bead" CBT730 RA NC_008544 "968,340" ?1 bp 6.10% coding (664/1581 nt) Bcen2424_6728 ? Bcen2424_6728 ? hypothetical protein Y Y N Should be 2 bp deletion "High carbon, small bead" CBT726 RA NC_008544 "968,341" ?1 bp 5.70% coding (663/1581 nt) Bcen2424_6728 ? Bcen2424_6728 ? hypothetical protein N N N Part of another mutation Should be 2 bp deletion "Low carbon, large bead" CBT730 RA NC_008544 "968,341" ?1 bp 6.10% coding (663/1581 nt) Bcen2424_6728 ? Bcen2424_6728 ? hypothetical protein N N N Part of another mutation Should be 2 bp deletion "High carbon, small bead" CBT726 RA NC_008544 "1,016,462" T?C 8.30% T1059T (ACA?ACG)  Bcen2424_6766 ? Bcen2424_6766 ? PE?PGRS family protein N N Y "Synonymous, reads appear misaligned" "Low carbon, large bead" CBT730 RA NC_008544 "1,016,462" T?C 10.20% T1059T (ACA?ACG)  Bcen2424_6766 ? Bcen2424_6766 ? PE?PGRS family protein N N Y "Synonymous, reads appear misaligned" "Low carbon, large bead" CBT732 RA NC_008544 "1,016,462" T?C 8.20% T1059T (ACA?ACG)  Bcen2424_6766 ? Bcen2424_6766 ? PE?PGRS family protein N N Y "Synonymous, reads appear misaligned" "High carbon, planktonic" CBT737 RA NC_008544 "1,016,513" A?G 8.90% G1042G (GGT?GGC)  Bcen2424_6766 ? Bcen2424_6766 ? PE?PGRS family protein N N Y "Synonymous, reads appear misaligned" "Low carbon, planktonic" CBT745 RA NC_008544 "1,016,756" C?T 5.40% V961V (GTG?GTA)  Bcen2424_6766 ? Bcen2424_6766 ? PE?PGRS family protein N N Y "Synonymous, reads appear misaligned" "High carbon, small bead" CBT724 RA NC_008544 "1,016,800" T?C 7.50% I947V (ATC?GTC)  Bcen2424_6766 ? Bcen2424_6766 ? PE?PGRS family protein N N N Reads appear to be misaligned "High carbon, large bead" CBT722 RA NC_008544 "1,016,822" T?C 10.30% T939T (ACA?ACG)  Bcen2424_6766 ? Bcen2424_6766 ? PE?PGRS family protein N N Y "Synonymous, " reads appear misaligned "High carbon, planktonic" CBT740 RA NC_008544 "1,016,822" T?C 9.90% T939T (ACA?ACG)  Bcen2424_6766 ? Bcen2424_6766 ? PE?PGRS family protein N N Y "Synonymous, reads appear misaligned" "High carbon, planktonic" CBT741 RA NC_008544 "1,016,822" T?C 11.50% T939T (ACA?ACG)  Bcen2424_6766 ? Bcen2424_6766 ? PE?PGRS family protein N N Y "Synonymous, reads appear misaligned" "Low carbon, planktonic" CBT742 RA NC_008544 "1,016,822" T?C 13.60% T939T (ACA?ACG)  Bcen2424_6766 ? Bcen2424_6766 ? PE?PGRS family protein N N Y Synonymous/Reads look misaligned "Low carbon, large bead" CBT734 RA NC_008544 "1,016,822" T?C 8.00% T939T (ACA?ACG)  Bcen2424_6766 ? Bcen2424_6766 ? PE?PGRS family protein Y N Y Synonymous "High carbon, planktonic" CBT737 RA NC_008544 "1,016,822" T?C 7.40% T939T (ACA?ACG)  Bcen2424_6766 ? Bcen2424_6766 ? PE?PGRS family protein Y N Y Synonymous "High carbon, small bead" CBT728 RA NC_008544 "1,017,725" T?C 9.50% V638V (GTA?GTG)  Bcen2424_6766 ? Bcen2424_6766 ? PE?PGRS family protein N N Y "Synonymous, reads appear misaligned" "High carbon, planktonic" CBT736 RA NC_008544 "1,017,814" G?A 7.00% L609L (CTG?TTG)  Bcen2424_6766 ? Bcen2424_6766 ? PE?PGRS family protein N N Y "Synonymous, reads appear misaligned" "High carbon, planktonic" CBT736 RA NC_008544 "1,017,818" C?A 6.80% G607G (GGG?GGT)  Bcen2424_6766 ? Bcen2424_6766 ? PE?PGRS family protein N N Y "Synonymous, reads appear misaligned" "Low carbon, planktonic" CBT745 RA NC_008544 "1,018,766" C?T 5.60% A291A (GCG?GCA)  Bcen2424_6766 ? Bcen2424_6766 ? PE?PGRS family protein N N Y "Synonymous, reads appear misaligned" "High carbon, large bead" CBT721 RA NC_008544 "1,019,030" T?C 7.10% A203A (GCA?GCG)  Bcen2424_6766 ? Bcen2424_6766 ? PE?PGRS family protein N N Y "Synonymous, reads misaligned" "High carbon, small bead" CBT726 RA NC_008544 "1,019,030" T?C 5.60% A203A (GCA?GCG)  Bcen2424_6766 ? Bcen2424_6766 ? PE?PGRS family protein N N Y "Synonymous, reads appear misaligned" "High carbon, small bead" CBT728 RA NC_008544 "1,019,030" T?C 6.30% A203A (GCA?GCG)  Bcen2424_6766 ? Bcen2424_6766 ? PE?PGRS family protein N N Y "Synonymous, reads appear misaligned" "Low carbon, large bead" CBT732 RA NC_008544 "1,019,030" T?C 5.70% A203A (GCA?GCG)  Bcen2424_6766 ? Bcen2424_6766 ? PE?PGRS family protein N N Y "Synonymous, reads appear misaligned" "High carbon, large bead" CBT721 RA NC_008544 "1,019,045" C?T 10.10% G198G (GGG?GGA)  Bcen2424_6766 ? Bcen2424_6766 ? PE?PGRS family protein N N Y "Synonymous, reads misaligned" "Low carbon, large bead" CBT732 RA NC_008544 "1,019,090" C?A 12.60% G183G (GGG?GGT)  Bcen2424_6766 ? Bcen2424_6766 ? PE?PGRS family protein N N Y "Synonymous, reads appear misaligned" "Low carbon, planktonic" CBT747 RA NC_008544 "1,019,090" C?A 13.70% G183G (GGG?GGT)  Bcen2424_6766 ? Bcen2424_6766 ? PE?PGRS family protein N N Y Synonymous "High carbon, small bead" CBT729 RA NC_008544 "1,023,602" T?C 5.10% E3016E (GAA?GAG)  Bcen2424_6767 ? Bcen2424_6767 ? outer membrane autotransporter Y N Y Synonymous "Low carbon, large bead" CBT732 RA NC_008544 "1,024,778" G?C 5.20% T2624T (ACC?ACG)  Bcen2424_6767 ? Bcen2424_6767 ? outer membrane autotransporter N N Y "Synonymous, reads appear misaligned" "High carbon, large bead" CBT718 RA NC_008544 "1,029,055" C?T 7.10% G1199S (GGC?AGC)  Bcen2424_6767 ? Bcen2424_6767 ? outer membrane autotransporter Y Y N "High carbon, large bead" CBT723 RA NC_008544 "1,030,160" G?A 6.60% S830S (AGC?AGT)  Bcen2424_6767 ? Bcen2424_6767 ? outer membrane autotransporter Y N Y Synonymous "High carbon, small bead" CBT725 RA NC_008544 "1,030,981" G?A 16.10% Q557* (CAA?TAA)  Bcen2424_6767 ? Bcen2424_6767 ? outer membrane autotransporter Y Y N "High carbon, small bead" CBT727 RA NC_008544 "1,036,075" C?T 6.40% T737I (ACC?ATC)  Bcen2424_6769 ? Bcen2424_6769 ? aerobic carbon monoxide dehydrogenase Y Y N "High carbon, planktonic" CBT738 RA NC_008544 "563,714:1" #NAME? 5.10% coding (421/1806 nt) Bcen2424_6366 ? Bcen2424_6366 ? transcriptional regulator Y Y N Should be 2bp insertion "High carbon, planktonic" CBT738 RA NC_008544 "563,714:2" +C 5.10% coding (421/1806 nt) Bcen2424_6366 ? Bcen2424_6366 ? transcriptional regulator N N N Part of another mutation Should be 2bp insertion "High carbon, small bead" CBT727 RA NC_008545 "79,200" T?A 5.10% V448D (GTC?GAC)  Bcen2424_6865 ? Bcen2424_6865 ? YadA domain?containing protein N N N Only at ends of reads "High carbon, small bead" CBT727 RA NC_008545 "85,660" G?A 6.40% A144A (GCG?GCA)  Bcen2424_6870 ? Bcen2424_6870 ? hypothetical protein Y N Y Synonymous "Low carbon, planktonic" CBT747 JC NC_008545 "100,409" #NAME? 16.50% coding (942/1086 nt) Bcen2424_6885 ? Bcen2424_6885 ? hypothetical protein N N N Only at ends of reads "High carbon, large bead" CBT721 JC NC_008545 "135,221" ?50 bp 31.50% coding (545?594/1008 nt) Bcen2424_6918 ? Bcen2424_6918 ? AraC family transcriptional regulator ??? ??? N "High carbon, small bead" CBT725 JC NC_008545 "135,221" ?50 bp 25.70% coding (545?594/1008 nt) Bcen2424_6918 ? Bcen2424_6918 ? AraC family transcriptional regulator ??? ??? N "High carbon, small bead" CBT727 JC NC_008545 "135,221" ?50 bp 22.60% coding (545?594/1008 nt) Bcen2424_6918 ? Bcen2424_6918 ? AraC family transcriptional regulator ??? ??? N "Low carbon, large bead" CBT731 JC NC_008545 "135,221" ?50 bp 11.10% coding (545?594/1008 nt) Bcen2424_6918 ? Bcen2424_6918 ? AraC family transcriptional regulator ??? ??? N "Low carbon, large bead" CBT732 JC NC_008545 "135,221" ?50 bp 15.60% coding (545?594/1008 nt) Bcen2424_6918 ? Bcen2424_6918 ? AraC family transcriptional regulator ??? ??? N "Low carbon, planktonic" CBT743 JC NC_008545 "135,221" ?50 bp 18.40% coding (545?594/1008 nt) Bcen2424_6918 ? Bcen2424_6918 ? AraC family transcriptional regulator ??? ??? N "Low carbon, planktonic" CBT744 JC NC_008545 "135,221" ?50 bp 17.30% coding (545?594/1008 nt) Bcen2424_6918 ? Bcen2424_6918 ? AraC family transcriptional regulator ??? ??? N "Low carbon, planktonic" CBT745 JC NC_008545 "135,221" ?50 bp 14.30% coding (545?594/1008 nt) Bcen2424_6918 ? Bcen2424_6918 ? AraC family transcriptional regulator ??? ??? N "Low carbon, planktonic" CBT747 JC NC_008545 "135,221" ?50 bp 46.80% coding (545?594/1008 nt) Bcen2424_6918 ? Bcen2424_6918 ? AraC family transcriptional regulator ??? ??? N "High carbon, large bead" CBT718 JC NC_008545 "135,221" ?50 bp 24.00% coding (545?594/1008 nt) Bcen2424_6918 ? Bcen2424_6918 ? AraC family transcriptional regulator ??? N N "High carbon, large bead" CBT720 JC NC_008545 "135,221" ?50 bp 23.70% coding (545?594/1008 nt) Bcen2424_6918 ? Bcen2424_6918 ? AraC family transcriptional regulator ??? N N "High carbon, large bead" CBT720 RA NC_008545 "152,354" C?T 7.90% intergenic (+527/?106) Bcen2424_6935 ? / ? Bcen2424_6936 Bcen2424_6936 ? nuclease/hypothetical protein N N N Reads appear to be misaligned All these mutations are linked "High carbon, small bead" CBT726 RA NC_008545 "152,354" C?T 5.70% intergenic (+527/?106) Bcen2424_6935 ? / ? Bcen2424_6936 Bcen2424_6936 ? nuclease/hypothetical protein N N N Reads appear to be misaligned "Low carbon, large bead" CBT732 RA NC_008545 "152,354" C?T 5.40% intergenic (+527/?106) Bcen2424_6935 ? / ? Bcen2424_6936 Bcen2424_6936 ? nuclease/hypothetical protein N N N Reads appear to be misaligned "High carbon, large bead" CBT720 RA NC_008545 "152,356" T?G 7.80% intergenic (+529/?104) Bcen2424_6935 ? / ? Bcen2424_6936 Bcen2424_6936 ? nuclease/hypothetical protein N N N Reads appear to be misaligned All these mutations are linked "High carbon, small bead" CBT726 RA NC_008545 "152,356" T?G 5.70% intergenic (+529/?104) Bcen2424_6935 ? / ? Bcen2424_6936 Bcen2424_6936 ? nuclease/hypothetical protein N N N Reads appear to be misaligned "Low carbon, large bead" CBT732 RA NC_008545 "152,356" T?G 5.50% intergenic (+529/?104) Bcen2424_6935 ? / ? Bcen2424_6936 Bcen2424_6936 ? nuclease/hypothetical protein N N N Reads appear to be misaligned "High carbon, large bead" CBT720 RA NC_008545 "152,357" T?A 7.80% intergenic (+530/?103) Bcen2424_6935 ? / ? Bcen2424_6936 Bcen2424_6936 ? nuclease/hypothetical protein N N N Reads appear to be misaligned All these mutations are linked "High carbon, small bead" CBT726 RA NC_008545 "152,357" T?A 5.50% intergenic (+530/?103) Bcen2424_6935 ? / ? Bcen2424_6936 Bcen2424_6936 ? nuclease/hypothetical protein N N N Reads appear to be misaligned "Low carbon, large bead" CBT732 RA NC_008545 "152,357" T?A 5.30% intergenic (+530/?103) Bcen2424_6935 ? / ? Bcen2424_6936 Bcen2424_6936 ? nuclease/hypothetical protein N N N Reads appear to be misaligned "High carbon, large bead" CBT720 RA NC_008545 "152,358" T?C 7.80% intergenic (+531/?102) Bcen2424_6935 ? / ? Bcen2424_6936 Bcen2424_6936 ? nuclease/hypothetical protein N N N Reads appear to be misaligned All these mutations are linked "High carbon, small bead" CBT726 RA NC_008545 "152,358" T?C 5.80% intergenic (+531/?102) Bcen2424_6935 ? / ? Bcen2424_6936 Bcen2424_6936 ? nuclease/hypothetical protein N N N Reads appear to be misaligned "Low carbon, large bead" CBT732 RA NC_008545 "152,358" T?C 5.50% intergenic (+531/?102) Bcen2424_6935 ? / ? Bcen2424_6936 Bcen2424_6936 ? nuclease/hypothetical protein N N N Reads appear to be misaligned "High carbon, large bead" CBT720 RA NC_008545 "152,359" T?G 7.70% intergenic (+532/?101) Bcen2424_6935 ? / ? Bcen2424_6936 Bcen2424_6936 ? nuclease/hypothetical protein N N N Reads appear to be misaligned All these mutations are linked "High carbon, small bead" CBT726 RA NC_008545 "152,359" T?G 5.70% intergenic (+532/?101) Bcen2424_6935 ? / ? Bcen2424_6936 Bcen2424_6936 ? nuclease/hypothetical protein N N N Reads appear to be misaligned "Low carbon, large bead" CBT732 RA NC_008545 "152,359" T?G 5.50% intergenic (+532/?101) Bcen2424_6935 ? / ? Bcen2424_6936 Bcen2424_6936 ? nuclease/hypothetical protein N N N Reads appear to be misaligned "High carbon, large bead" CBT720 RA NC_008545 "152,362" ?1 bp 7.60% intergenic (+535/?98) Bcen2424_6935 ? / ? Bcen2424_6936 Bcen2424_6936 ? nuclease/hypothetical protein N N N Reads appear to be misaligned All these mutations are linked "High carbon, small bead" CBT726 RA NC_008545 "152,362" ?1 bp 5.60% intergenic (+535/?98) Bcen2424_6935 ? / ? Bcen2424_6936 Bcen2424_6936 ? nuclease/hypothetical protein N N N Reads appear to be misaligned "Low carbon, large bead" CBT732 RA NC_008545 "152,362" ?1 bp 5.40% intergenic (+535/?98) Bcen2424_6935 ? / ? Bcen2424_6936 Bcen2424_6936 ? nuclease/hypothetical protein N N N Reads appear to be misaligned "High carbon, large bead" CBT720 RA NC_008545 "152,363" C?G 7.60% intergenic (+536/?97) Bcen2424_6935 ? / ? Bcen2424_6936 Bcen2424_6936 ? nuclease/hypothetical protein N N N Reads appear to be misaligned All these mutations are linked "High carbon, small bead" CBT726 RA NC_008545 "152,363" C?G 5.70% intergenic (+536/?97) Bcen2424_6935 ? / ? Bcen2424_6936 Bcen2424_6936 ? nuclease/hypothetical protein N N N Reads appear to be misaligned "Low carbon, large bead" CBT732 RA NC_008545 "152,363" C?G 5.60% intergenic (+536/?97) Bcen2424_6935 ? / ? Bcen2424_6936 Bcen2424_6936 ? nuclease/hypothetical protein N N N Reads appear to be misaligned "High carbon, large bead" CBT720 RA NC_008545 "152,365" C?T 7.70% intergenic (+538/?95) Bcen2424_6935 ? / ? Bcen2424_6936 Bcen2424_6936 ? nuclease/hypothetical protein N N N Reads appear to be misaligned All these mutations are linked "High carbon, small bead" CBT726 RA NC_008545 "152,365" C?T 5.60% intergenic (+538/?95) Bcen2424_6935 ? / ? Bcen2424_6936 Bcen2424_6936 ? nuclease/hypothetical protein N N N Reads appear to be misaligned "Low carbon, large bead" CBT732 RA NC_008545 "152,365" C?T 5.30% intergenic (+538/?95) Bcen2424_6935 ? / ? Bcen2424_6936 Bcen2424_6936 ? nuclease/hypothetical protein N N N Reads appear to be misaligned "High carbon, large bead" CBT720 RA NC_008545 "152,366" A?T 7.70% intergenic (+539/?94) Bcen2424_6935 ? / ? Bcen2424_6936 Bcen2424_6936 ? nuclease/hypothetical protein N N N Reads appear to be misaligned All these mutations are linked "High carbon, small bead" CBT726 RA NC_008545 "152,366" A?T 6.00% intergenic (+539/?94) Bcen2424_6935 ? / ? Bcen2424_6936 Bcen2424_6936 ? nuclease/hypothetical protein N N N Reads appear to be misaligned "Low carbon, large bead" CBT732 RA NC_008545 "152,366" A?T 5.30% intergenic (+539/?94) Bcen2424_6935 ? / ? Bcen2424_6936 Bcen2424_6936 ? nuclease/hypothetical protein N N N Reads appear to be misaligned "High carbon, small bead" CBT726 RA NC_008545 "152,485" A?G 7.10% H9R (CAC?CGC)  Bcen2424_6936 ? Bcen2424_6936 ? hypothetical protein N N N Reads appear to be misaligned "High carbon, small bead" CBT727 RA NC_008545 "152,505" A?T 10.20% N16Y (AAC?TAC) ‡ Bcen2424_6936 ? Bcen2424_6936 ? hypothetical protein N N N Reads appear to be misaligned "High carbon, small bead" CBT728 RA NC_008545 "152,505" A?T 5.30% N16Y (AAC?TAC) ‡ Bcen2424_6936 ? Bcen2424_6936 ? hypothetical protein N N N Reads appear to be misaligned "High carbon, small bead" CBT727 RA NC_008545 "152,506" A?G 10.20% N16S (AAC?AGC) ‡ Bcen2424_6936 ? Bcen2424_6936 ? hypothetical protein N N N Reads appear to be misaligned "High carbon, small bead" CBT728 RA NC_008545 "152,506" A?G 5.30% N16S (AAC?AGC) ‡ Bcen2424_6936 ? Bcen2424_6936 ? hypothetical protein N N N Reads appear to be misaligned "High carbon, small bead" CBT727 RA NC_008545 "152,508" C?T 10.70% P17S (CCG?TCG)  Bcen2424_6936 ? Bcen2424_6936 ? hypothetical protein N N N Reads appear to be misaligned "High carbon, small bead" CBT728 RA NC_008545 "152,508" C?T 5.10% P17S (CCG?TCG)  Bcen2424_6936 ? Bcen2424_6936 ? hypothetical protein N N N Reads appear to be misaligned "High carbon, small bead" CBT727 RA NC_008545 "152,511" C?A 10.60% R18S (CGT?AGT) ‡ Bcen2424_6936 ? Bcen2424_6936 ? hypothetical protein N N N Reads appear to be misaligned "High carbon, small bead" CBT728 RA NC_008545 "152,511" C?A 5.20% R18S (CGT?AGT) ‡ Bcen2424_6936 ? Bcen2424_6936 ? hypothetical protein N N N Reads appear to be misaligned "High carbon, small bead" CBT727 RA NC_008545 "152,512" G?A 10.60% R18H (CGT?CAT) ‡ Bcen2424_6936 ? Bcen2424_6936 ? hypothetical protein N N N Reads appear to be misaligned "High carbon, small bead" CBT728 RA NC_008545 "152,512" G?A 5.20% R18H (CGT?CAT) ‡ Bcen2424_6936 ? Bcen2424_6936 ? hypothetical protein N N N Reads appear to be misaligned "High carbon, small bead" CBT727 RA NC_008545 "152,513" T?A 10.90% R18R (CGT?CGA) ‡ Bcen2424_6936 ? Bcen2424_6936 ? hypothetical protein N N N Reads appear to be misaligned "High carbon, small bead" CBT728 RA NC_008545 "152,513" T?A 5.20% R18R (CGT?CGA) ‡ Bcen2424_6936 ? Bcen2424_6936 ? hypothetical protein N N N Reads appear to be misaligned "High carbon, small bead" CBT727 RA NC_008545 "152,514" C?A 10.90% R19R (CGA?AGA)  Bcen2424_6936 ? Bcen2424_6936 ? hypothetical protein N N N Reads appear to be misaligned "High carbon, small bead" CBT728 RA NC_008545 "152,514" C?A 5.30% R19R (CGA?AGA)  Bcen2424_6936 ? Bcen2424_6936 ? hypothetical protein N N N Reads appear to be misaligned "High carbon, small bead" CBT727 RA NC_008545 "152,507:1" #NAME? 10.80% coding (48/396 nt) Bcen2424_6936 ? Bcen2424_6936 ? hypothetical protein N N N Reads appear to be misaligned "High carbon, small bead" CBT728 RA NC_008545 "152,507:1" #NAME? 5.10% coding (48/396 nt) Bcen2424_6936 ? Bcen2424_6936 ? hypothetical protein N N N Reads appear to be misaligned "High carbon, small bead" CBT724 RA NC_008545 "98,110:1" +C 6.70% coding (38/207 nt) Bcen2424_6882 ? Bcen2424_6882 ? hypothetical protein Y Y N Should be 3 bp insertion "High carbon, small bead" CBT724 RA NC_008545 "98,110:2" #NAME? 6.70% coding (38/207 nt) Bcen2424_6882 ? Bcen2424_6882 ? hypothetical protein N N N Part of another mutation Should be 3 bp insertion "High carbon, small bead" CBT724 RA NC_008545 "98,110:3" +C 6.70% coding (38/207 nt) Bcen2424_6882 ? Bcen2424_6882 ? hypothetical protein N N N Part of another mutation Should be 3 bp insertion