Supplementary data for 'Conservation genetics of native and European-introduced Chinese Water Deer (Hydropotes inermis)' Reference: Putman, R., Dunn, N., Zhang, E., Chen, M., Miquel, C. and Savolainen, V., 2020. Conservation genetics of native and European-introduced Chinese water deer (Hydropotes inermis). Zoological Journal of the Linnean Society. Files: Cyt-B.fasta: Alignment of 92 sequences used in the analysis of the cytochrome-B gene. Sequence labels are as follows: Sequences from this study: zs - Zhoushan Islands, China js - Jishan Island, China yc - Yancheng, China df - Dafeng, China WS - Whipsnade Park, UK WWF - Woodwalton Fen, UK Sequences from Genbank are described in the Materials and Methods Aligned using MUSCLE 3.8.425 in Geneious Prime with default parameters and a maximum of 8 iterations Genious_Dloop.fasta Alignment of 107 sequences used in the analysis of the control region. Sequence labels are as follows: Sequences from this study: zs - Zhoushan Islands, China js - Jishan Island, China yc - Yancheng, China df - Dafeng, China WS - Whipsnade Park, UK WWF - Woodwalton Fen, UK bure - Bure marshes, UK Yare - Yare marshes, UK Sequences from Genbank are described in the Materials and Methods Aligned using MUSCLE 3.8.425 in Geneious Prime with default parameters and a maximum of 8 iterations