http://dx.doi.org/10.5061/dryad.1926 Data from: Echinoderm phylogeny including Xyloplax, a progenetic asteroid. Daniel Janies, Janet Voight, Marymegan Daly In press at Systematic Biology contact info Daniel.Janies@osumc.edu -------------------------------------------------------------------------------- This datastet Includes following native data files. 3 sets of orthologous fragments from the 18S rDNA of the nuclear genome 18S.region1.may4.compress.fas 18S.reg2.1.addpm2.compress 18S.reg2.2.may4cos.compress 9 sets of orthologous fragments from the 28S rDNA of the nuclear genome 28.0.may4.compress 28.1.1.dec24.compress 28.1.2.dec24.compress 28S.3.1.dec24.compress 28S.3.2.may4.compress 28S.3.3.may4.compress 28S.3.4.may4.compress 28S.3.5.may4.compress 28.4.jan2.compress 1 set of orthologous fragments from the 12S rDNA of the mitochondrial genome S12.june16.compress 1 set of orthologous fragments from the 16S rDNA of the mitochondrial genome S16.addmyx.compress 3 sets of orthologous fragments from the tRNAs and flanking regions of the mitochondrial genome trnar2.may4.compress.fixapril trnar3.may4.compress trnar4.may4.compress 1 set of orthologous fragments from the cytochrome oxidase of the mitochondrial genome coi.may4.compress 1 set of orthologous fragments from the histone H3 of the nuclear genome H3.june16.prealined The terminal taxa in the active analysis terminalsfile86 The phenotypic characters used pheno8636charafinal PCR primers used to generate primary sequence data primers -------------------------------------------------------------------------------- The Genbank accession numbers for sequence data used accessionsfinal -------------------------------------------------------------------------------- trees and alignments POY runs for molecular and phenotypic data under gapcost=1 tv=2 ts=1 POY tree 19834.first.tre NEXUS file based on phenotypic data and implied alignment of molecular data taxa86new.gapcost1tv2ts1.morph36charfinal.h3pre.first19834.nex MAP tree from MRBAYES search on implied alignment and phenotypic data taxa86new.gapcost1tv2ts1.morph36charfinal.h3pre.first19834.best.tre CON tree from MRBAYES search on implied alignment and phenotypic data (note used dendroscope to view) taxa86new.gapcost1tv2ts1.morph36charfinal.h3pre.first19834.nex.con -------------------------------------------------------------------------------- trees and alignments POY runs for molecular data under gapcost=1 tv=1 ts=1 taxa86new.h3prereally.16295.tre NEXUS file based on implied alignment of molecuar dataa taxa86new.h3prereally.diag16295exact.oneline.nex MAP tree from MRBAYES search on implied alignment taxa86new.h3prereally.diag16295exact.mb.nex.map CON tree from MRBAYES search on implied alignment and phenotypic data (note used dendroscope to view) taxa86new.h3prereally.diag16295exact.mb.nex.con -------------------------------------------------------------------------------- NEXUS file based on phenotypic data and clustalw alignment of molecular data taxa8611005mb.morphfix.nex MAP tree from MRBAYES search on phenotypic data and clustalw alignment of molecular data taxa8611005mb.morphfix.nex.map CON tree from MRBAYES search on phenotypic data and clustalw alignment of molecular data (note used dendroscope to view) taxa8611005mb.morphfix.nex.con -------------------------------------------------------------------------------- NEXUS file based on clustalw alignment of molecular data taxa8611005mb.nex MAP tree from MRBAYES search on clustalw alignment of molecular data taxa8611005mb.nex.con CON tree from MRBAYES search on clustalw alignment of molecular data taxa8611005mb.nex.map -------------------------------------------------------------------------------- Note the working names of some species were corrected post analysis in production editing: Astrogoniummiliarus = Diplodontias miliaris Astropectenpolycanthus = Astropecten polyacanthus Eurygoniushylacanthus = Eurygonias hylacanthus Xyloplaxjaneti = Xyloplax janetae