ABIF,tdir 2018-06-29 05:00:00.0 2016-04-06 00:07:00.0 1711424 Fragment_Analysis_PA_Protocol SizeCaller v1.1.0 1,2,3,4,5,6truekey=1,value=51;key=2,value=51;key=3,value=51;key=4,value=51;key=5,value=51;key=6,value=51;key=1,value=2;key=2,value=2;key=3,value=2;key=4,value=2;key=5,value=2;key=6,value=2;key=1,value=0;key=2,value=0;key=3,value=0;key=4,value=0;key=5,value=0;key=6,value=0;key=1,value=15;key=2,value=15;key=3,value=15;key=4,value=15;key=5,value=15;key=6,value=15;key=1,value=0.0;key=2,value=0.0;key=3,value=0.0;key=4,value=0.0;key=5,value=0.0;key=6,value=0.0;LocalSouthern10000001key=1,value=0.0;key=2,value=0.0;key=3,value=0.0;key=4,value=0.0;key=5,value=0.0;key=6,value=0.0;key=1,value=3;key=2,value=3;key=3,value=3;key=4,value=3;key=5,value=3;key=6,value=3;0.0truetruetrue100000.00.0800.0key=1,value=true;key=2,value=true;key=3,value=true;key=4,value=true;key=5,value=true;key=6,value=true;0key=1,value=true;key=2,value=true;key=3,value=true;key=4,value=true;key=5,value=true;key=6,value=true;key=1,value=175;key=2,value=175;key=3,value=175;key=4,value=175;key=5,value=175;key=6,value=175;true560.0,80.0,100.0,114.0,120.0,140.0,160.0,180.0,200.0,214.0,220.0,240.0,250.0,260.0,280.0,300.0,314.0,320.0,340.0,360.0,380.0,400.0,414.0,420.0,440.0,460.0,480.0,500.0,514.0,520.0,540.0,560.0,580.0,600.0200.0,220.0,240.0,260.0,280.0,300.0,314.0,320.0,340.0,360.0,400.00.75,0.2510.00.051.5false FragmentPOP7508// FragmentAnalysis50POP7 module edited 07/21/08
// Fragment Analysis module -- 8 capillary
//
//REGULARDC_RunModule_Comment;FragmentAnalysis50POP7 module edited 07/21/08;List.;STRING;nk;nk;Run Module Comment;falseOven_Temperature;60;Deg. C;INTEGER;18;65;Oven Temperature throughout the run;trueTemperature_Tolerance;3;Deg. C;INTEGER;0;50;Tolerance of the temperature that the system will use during its wait for temperature state;falseOven_Wait_Time;1800;sec.;INTEGER;1;1800;Timeout for oven wait for temperature;falseArray_Heater_Temperature;50;Deg. C;FLOAT;30.0;50.0;Detection cell heater temperature setting;falsePoly_Fill_Vol;2000;steps;INTEGER;1000;4600;We recommend that you do not change this value unless advised otherwise by Applied Biosystems support personnel;trueCap_Fill_Vol;1195;steps;INTEGER;1;4600;Number of steps to pump during capillary fill;falseDC_Cap8_EPS_ARC_SELF;4;uAmps;INTEGER;1;1000;Arc current self test for 8 cap array;falseMax_Current;425;uAmps;INTEGER;1;500;Power supply current limit;falseCurrent_Stability;20.1;uAmps;FLOAT;0;1000;Max Current Variance for EP;trueVoltage_Tolerance;0.7;kVolts;FLOAT;0.0;5.0;Power supply voltage tolerance;falsePreRun_Voltage;15;kVolts;FLOAT;0;18;Pre-Run Voltage;trueDC_PreRun_Time;180;sec.;INTEGER;1;1000;Length of Pre-Run;trueInjection_Voltage;1.6;kVolts;FLOAT;1;15;Injection Voltage;trueDC_Injection_Time;8;sec.;INTEGER;1;600;Injection Time;trueInjection_Depth_Offset;0;steps;INTEGER;-500;500;Injection Depth Offset;falseVoltage_Number_Of_Steps;30;nk;INTEGER;1;100;We recommend that you do not change this value unless advised otherwise by Applied Biosystems support personnel;trueVoltage_Step_Interval;15;sec;INTEGER;1;60;We recommend that you do not change this value unless advised otherwise by Applied Biosystems support personnel;trueVoltage_Ramp_Wait;450;sec;INTEGER;1;1000;We recommend that you do not change this value unless advised otherwise by Applied Biosystems support personnel;falseDC_Data_Delay;1;sec.;INTEGER;1;3600;Time delay before beginning data collection;trueRun_Voltage;19.5;kVolts;FLOAT;0;19.5;Separation (run) Voltage.;trueDC_Run_Time;1330;sec.;INTEGER;300;14000;Separation (run) Time;trueFirst_ReadOut_Time;200;msec.;INTEGER;100;5000;Sampling rate in milliseconds coming from the camera;falseSecond_ReadOut_Time;200;msec.;INTEGER;100;5000;Sampling rate in milliseconds coming from the camera;falseExposure_Time;0;msec.;INTEGER;0;5000;CCD exposure time = integration time in milliseconds;falseDC_RS_Plate_Type;$DC_RS_Plate_Type;List.;STRING;nk;nk;Plate type indicator;falseDC_RS_CSData;$DC_RS_CSData;List;STRING;nk;nk;Capillary mapping;falseDC_RS_Binning_Pattern;;pixels;STRING;;;spectral binning pattern;falseDC_Scale_Divisor;2.0;;FLOAT;;;scale divisor;falseDC_Down_Sample;1;;INTEGER;;;number of frames to average;falseDC_Laser_Power_Setting;20.0;mWatts;FLOAT;;;laser power setting;falseIn_Lane_Normalization_Target;4500.0;;FLOAT;600.0;30000.0;In lane normalization target intensity;trueIn_Lane_Normalization_Factor_Min;0.3;;FLOAT;0.2;5.0;In lane normalization minimum allowed factor;trueIn_Lane_Normalization_Factor_Max;3.0;;FLOAT;0.2;5.0;In lane normalization maximum allowed factor;true//
//
SYSTem:MESSage "$DC_RunModule_Comment"
//
//
//
// Turning Laser On
//
SYSTem:MESSage "Turning Laser On."
LAS:POW:SETT $DC_Laser_Power_Setting
LAS:POW:TOL 1.0
LAS On
//
//
// Turning Zohana On
//
SYSTem:MESSage "Turning Detection Heater On."
DETH:TEMP:TOL 3.0
DETH:TEMP:SETT $Array_Heater_Temperature
DETH On
//
//
// Turning Oven On
//
SYSTem:MESSage "Setting Oven Temperature."
OVEN:TEMP:TOL $Temperature_Tolerance
OVEN:TEMP:SETT $Oven_Temperature
OVEN On
//
//
// Initializing Autosampler
//
SYSTem:MESSage "Initializing Autosampler."
STR Initialize
//
// Filling Polymer Pump
//
SYSTem:MESSage "Loading Waste Tray."
STR:ROB:MOV:LOAD Waste
FLU:POLY:PRES Up 0.34 50
FLU:POLY:PRES Down 0.21 200
SYSTem:MESSage "Filling Polymer Pump"
FLU:POLY:FILL $Poly_Fill_Vol
//
// Waiting for Oven to Stabilize at Run Temperature
//
SYSTem:MESSage "Waiting for Oven to Stabilize at Run Temperature"
OVEN:SYNC $Oven_Wait_Time
//
// Waiting for Detection Heater to Stabilize at Run Temperature
//
SYSTem:MESSage "Waiting for Detection Heater to Stabilize at Run Temperature"
DETH:SYNC 1800
//
// Waiting for Laser to Stabilize at Power Setting
//
SYSTem:MESSage "Waiting for Laser to Stabilize at Power Setting"
LAS:SYNC 600
//
//
// Filling Array
//
SYSTem:MESSage "Filling Array with Polymer."
FLU:CAP:FILL:THRE 1000
FLU:CAP:FILL $Cap_Fill_Vol
//
// Rinsing Capillaries
//
SYSTem:MESSage "Rinsing Capillary Tips."
STR:ROB:MOV:LOAD Water
SYST:WAIT 3
//
SYSTem:MESSage "Loading Buffer Tray."
STR:ROB:MOV:LOAD Buffer
SYST:WAIT 3
//
// Bubble Check
//
SYSTem:MESSage "Testing for Normal Current."
EPS:CURR:LIM $Max_Current
EPS:CURR:ARC:THRE $Current_Stability
EPS:VOLT:SETT 2.0
EPS On
SYST:WAIT 2
EPS:CURR:ARC:SELF $DC_Cap8_EPS_ARC_SELF
EPS Off
//
// Pre Run
//
SYSTem:MESSage "PreRun"
EPS:VOLT:TOL $Voltage_Tolerance
EPS:VOLT:SETT $PreRun_Voltage
EPS On
EPS:SYNC 10
SYST:WAIT $DC_PreRun_Time
EPS Off
SYST:WAIT 3
//
//
// Rinse Capillaries
//
SYSTem:MESSage "Rinsing Capillary Tips."
STR:ROB:MOV:LOAD Water
SYST:WAIT 3
//
// Sample injection
//
SYSTem:MESSage "Sample Injection."
STR:ROB:ZOFF $Injection_Depth_Offset
STR:CSO $DC_RS_CSData
STR:ROB:MOV:LOAD $DC_RS_Plate_Type
SYST:WAIT 15
EPS:VOLT:SETT $Injection_Voltage
EPS On
SYST:WAIT $DC_Injection_Time
EPS Off
EPS:VOLT:SETT 0.0
SYST:WAIT 1
STR:ROB:ZOFF 0
//
// Rinsing Capillaries
//
SYSTem:MESSage "Rinsing Capillary Tips."
STR:ROB:MOV:LOAD Water
SYST:WAIT 3
//
// Starting Electrophoresis
//
SYSTem:MESSage "Loading Buffer Tray."
STR:ROB:MOV:LOAD Buffer
SYST:WAIT 3
SYSTem:MESSage "Ramping Cycle."
EPS:VOLT:TOL $Voltage_Tolerance
EPS:VOLT:SQRR $Run_Voltage $Voltage_Number_Of_Steps $Voltage_Step_Interval
EPS On
SYST:WAIT $Voltage_Ramp_Wait
EPS:SYNC 10
//
// Data Delay
//
SYSTem:MESSage "Waiting for Data."
SYST:WAIT $DC_Data_Delay
//
// CCD beginning data read
//
CAM:SHUT Auto
DAT:SRAT $First_ReadOut_Time $Second_ReadOut_Time
DAT:MODe Binning
SYSTem:MESSage "Starting Data Collection."
DAT:COLL Start
SYST:WAIT $DC_Run_Time
SYSTem:MESSage "Stop Data Collection."
DAT:COLL Stop
EPS Off
EPS:VOLT:SETT 0.0
SYST:WAIT 1
//LAS Off
//DETH Off
//OVEN Off
//
//
// End Of Module5[0,1,2,3,4,5,6,7,8,9,10,11,0,12,13,14,15,16,17,18,19,20;
0,3,9,18,26,34,44,53,60,77,83,94,122,134,142,150,158,168,178,198,213,224;
2,8,17,25,33,43,52,59,76,82,93,121,133,141,149,157,167,177,197,212,223,234][100.0,200.0,300.0,400.0,500.0][100.0,200.0,300.0,400.0,500.0]3AppliedBiosystems1.013.50.950.99Applied Biosystems[6-FAM;522;1, VIC;554;2, NED;575;3, PET;595;4, LIZ;655;5][POP4, POP6, POP7][36, 50][matrixStandard]1,2,3,4,5,6truekey=1,value=51;key=2,value=51;key=3,value=51;key=4,value=51;key=5,value=51;key=6,value=51;key=1,value=2;key=2,value=2;key=3,value=2;key=4,value=2;key=5,value=2;key=6,value=2;key=1,value=0;key=2,value=0;key=3,value=0;key=4,value=0;key=5,value=0;key=6,value=0;key=1,value=15;key=2,value=15;key=3,value=15;key=4,value=15;key=5,value=15;key=6,value=15;key=1,value=0.0;key=2,value=0.0;key=3,value=0.0;key=4,value=0.0;key=5,value=0.0;key=6,value=0.0;LocalSouthern10000001key=1,value=0.0;key=2,value=0.0;key=3,value=0.0;key=4,value=0.0;key=5,value=0.0;key=6,value=0.0;key=1,value=3;key=2,value=3;key=3,value=3;key=4,value=3;key=5,value=3;key=6,value=3;0.0truetruetrue100000.00.0800.0key=1,value=true;key=2,value=true;key=3,value=true;key=4,value=true;key=5,value=true;key=6,value=true;0key=1,value=true;key=2,value=true;key=3,value=true;key=4,value=true;key=5,value=true;key=6,value=true;key=1,value=175;key=2,value=175;key=3,value=175;key=4,value=175;key=5,value=175;key=6,value=175;true560.0,80.0,100.0,114.0,120.0,140.0,160.0,180.0,200.0,214.0,220.0,240.0,250.0,260.0,280.0,300.0,314.0,320.0,340.0,360.0,380.0,400.0,414.0,420.0,440.0,460.0,480.0,500.0,514.0,520.0,540.0,560.0,580.0,600.0200.0,220.0,240.0,260.0,280.0,300.0,314.0,320.0,340.0,360.0,400.00.75,0.2510.00.051.5Fragment_Analysis_Assay TestVersion-1 2017-05-19 05:00:00.0 2017-01-04 13:23:00.0 L516F5005 2018-08-10 05:00:00.0 2016-04-06 00:08:00.0 1711467 2018.07.20_PL1560 Comment:T1yAq8lDhqROu5PAc6BMtw==
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