#NEXUS [written Thu Apr 30 14:06:57 PDT 2020 by Mesquite version 3.6 (build 917) at COS-BI-E051900/92.242.140.2] BEGIN TAXA; TITLE Taxa; DIMENSIONS NTAX=59; TAXLABELS Jotus_auripes_161 Saitis_virgatus_159 Saitis_mutans_178 Hypoblemum_scutulatum_166 Hypoblemum_griseum_168 speculifer_121 flame_18C carmel_93C robinsoni_131 purcellae_179 nimbus_87C nigromaculatus_65C chrysomelas_22C spicatus_71 watagansi_169 splendens_132 maritimus_146 western_pavonis_88 SE_pavonis_129 ACT_pavonis_32C literatus_71C leo2_75C vultus_15C albus_8C anomalus_81 sceletus_137 cinereus_56C michaelorum_1C neptunus_173 aurantius_63C Saratus_145 amabilis_68 speciosus_86 vespertillio_43C velutinus_133 proszynskii_3C harissi_14C calcitrans_72 jacatus_118 ottoi_59C digitatus_125 eliasi_81C elephans_151 volans_94 plumosus_130 cf_plumosus_39C tasmanicus_49C australis_153 personatus_154 pardus_157 avibus_92C caeruleus_6C flavus_124 clupeatus_96 madelineae_69 linnaei_112 vespa_70C sarahae_114 mungiach_52 ; END; BEGIN CHARACTERS; TITLE Character_Matrix; DIMENSIONS NCHAR=9; FORMAT DATATYPE = STANDARD RESPECTCASE GAP = - MISSING = ? SYMBOLS = " 0 1 2 3 4 5"; CHARSTATELABELS 1 raises_abdomen, 2 lateral_fan_flap, 3 overall_fan_shape, 4 leg_III_use, 5 white_brush_leg_III_tarsi, 6 elongated_spinnerets_display, 7 vigorous_tapping, 8 'vibrations produced pre-mount', 9 'pre-mount display' ; MATRIX Jotus_auripes_161 000000021 Saitis_virgatus_159 000210120 Saitis_mutans_178 000210022 Hypoblemum_scutulatum_166 200000??? Hypoblemum_griseum_168 2002000?1 speculifer_121 200100001 flame_18C 200000001 carmel_93C 200000001 robinsoni_131 200100001 purcellae_179 200000001 nimbus_87C 200000001 nigromaculatus_65C 230220002 chrysomelas_22C 200220002 spicatus_71 200000001 watagansi_169 000220122 splendens_132 221220122 maritimus_146 000220122 western_pavonis_88 211220122 SE_pavonis_129 211220122 ACT_pavonis_32C 211220122 literatus_71C 211220122 leo2_75C 100220122 vultus_15C 211220022 albus_8C 000220122 anomalus_81 200220122 sceletus_137 200212022 cinereus_56C 200211002 michaelorum_1C 200220012 neptunus_173 200221022 aurantius_63C 200211012 Saratus_145 200000121 amabilis_68 222220122 speciosus_86 230220022 vespertillio_43C 223200022 velutinus_133 200200022 proszynskii_3C 200200022 harissi_14C 223220122 calcitrans_72 200222022 jacatus_118 211222012 ottoi_59C 200222012 digitatus_125 223222022 eliasi_81C 225222012 elephans_151 222220022 volans_94 222220022 plumosus_130 214210022 cf_plumosus_39C 214210022 tasmanicus_49C 222220022 australis_153 223220022 personatus_154 000220022 pardus_157 222220022 avibus_92C 222220022 caeruleus_6C 222220022 flavus_124 200220022 clupeatus_96 222220022 madelineae_69 222220022 linnaei_112 200210022 vespa_70C 214220022 sarahae_114 222220022 mungiach_52 222220022 ; END; BEGIN TREES; Title 'Trees from "Maratus_CharacterData.nex"'; ID 0171a8631baf1; LINK Taxa = Taxa; TRANSLATE [0] 1 Jotus_auripes_161, [1] 2 Saitis_virgatus_159, [2] 3 Saitis_mutans_178, [3] 4 Hypoblemum_scutulatum_166, [4] 5 Hypoblemum_griseum_168, [5] 6 speculifer_121, [6] 7 flame_18C, [7] 8 carmel_93C, [8] 9 robinsoni_131, [9] 10 purcellae_179, [10] 11 nimbus_87C, [11] 12 nigromaculatus_65C, [12] 13 chrysomelas_22C, [13] 14 spicatus_71, [14] 15 watagansi_169, [15] 16 splendens_132, [16] 17 maritimus_146, [17] 18 western_pavonis_88, [18] 19 SE_pavonis_129, [19] 20 ACT_pavonis_32C, [20] 21 literatus_71C, [21] 22 leo2_75C, [22] 23 vultus_15C, [23] 24 albus_8C, [24] 25 anomalus_81, [25] 26 sceletus_137, [26] 27 cinereus_56C, [27] 28 michaelorum_1C, [28] 29 neptunus_173, [29] 30 aurantius_63C, [30] 31 Saratus_145, [31] 32 amabilis_68, [32] 33 speciosus_86, [33] 34 vespertillio_43C, [34] 35 velutinus_133, [35] 36 proszynskii_3C, [36] 37 harissi_14C, [37] 38 calcitrans_72, [38] 39 jacatus_118, [39] 40 ottoi_59C, [40] 41 digitatus_125, [41] 42 eliasi_81C, [42] 43 elephans_151, [43] 44 volans_94, [44] 45 plumosus_130, [45] 46 cf_plumosus_39C, [46] 47 tasmanicus_49C, [47] 48 australis_153, [48] 49 personatus_154, [49] 50 pardus_157, [50] 51 avibus_92C, [51] 52 caeruleus_6C, [52] 53 flavus_124, [53] 54 clupeatus_96, [54] 55 madelineae_69, [55] 56 linnaei_112, [56] 57 vespa_70C, [57] 58 sarahae_114, [58] 59 mungiach_52; TREE tree_2 = (20:0.0018616814,((((((((5:0.0050319387,4:0.0052059147):0.008697039,(((8:0.0012275369,7:0.0020977633):0.0017260894,6:0.0052357662):0.0049984671,((((13:0.0025038564,14:0.0033299175):0.000586497,12:0.0032425623):0.0005987915,11:0.0036485184):0.0030487725,(10:0.0052528764,9:0.0046307644):0.0028094015):0.0037844816):0.0176121701):0.0028122096,((1:0.0106060028,2:0.0151268655):0.0135387538,3:0.0225013426):0.003980047):0.0030437551,((31:0.0069410727,(32:0.0042245333,((((((((48:0.0025701477,((((51:0.0015994055,52:0.0018909142):0.0015179405,50:0.0021874949):0.0004542205,49:0.0031276049):0.0002941873,((54:0.0019841637,(((56:0.0027441147,(55:0.0018684464,57:0.00175044):0.0001725579):0.0001655562,59:0.0015881612):0.0001633569,58:0.0028373796):0.0001170056):0.0002336806,53:0.0027104019):0.0002589896):0.0002330525):0.0005956576,(46:0.0022957244,47:0.0020205973):0.0004717156):0.0003866176,45:0.0028318521):0.0004279277,(43:0.0026723673,44:0.0028091712):0.00062503):0.0002297491,((38:0.0022566788,39:0.0012712125):0.001502348,((41:0.0020302227,42:0.0023258097):0.0006447468,40:0.0036728647):0.0010613084):0.0007231516):0.0007048456,37:0.0025467449):0.0004611479,(36:0.0023871114,35:0.0035355558):0.0019465648):0.0003936573,(33:0.0072468287,34:0.0058622002):0.0001960915):0.000388419):0.0005760441):0.0005506194,((24:0.0045016011,23:0.0031455278):0.000730148,(25:0.0022109203,(((30:0.0014189487,29:0.0007699632):0.0008017393,(27:0.0016004636,28:0.0010307951):0.0002726829):0.0013094307,26:0.0027146499):0.0017512994):0.0015965178):0.0052873466):0.0015150906):0.0029811791,15:0.0058055735):0.001780304,16:0.0038625936):0.0010201967,(17:0.0020128945,18:0.002760496):0.0004412609):0.0005914667,(22:0.0014551727,21:0.0018454853):0.0002909415):0.0002656537,19:0.0016960158); END; BEGIN ASSUMPTIONS; TYPESET * UNTITLED = unord: 1- 9; END; BEGIN MESQUITECHARMODELS; ProbModelSet * UNTITLED = 'Mk1 (est.)': 1- 9; END; Begin MESQUITE; MESQUITESCRIPTVERSION 2; TITLE AUTO; tell ProjectCoordinator; timeSaved 1588280817508; getEmployee #mesquite.minimal.ManageTaxa.ManageTaxa; tell It; setID 0 400027619142302785; endTell; getEmployee #mesquite.charMatrices.ManageCharacters.ManageCharacters; tell It; setID 0 6210975684302165577; mqVersion 360; checksumv 0 3 294647400 null getNumChars 9 numChars 9 getNumTaxa 59 numTaxa 59 short true bits 63 states 63 sumSquaresStatesOnly 6770.0 sumSquares 6770.0 longCompressibleToShort false usingShortMatrix true NumFiles 1 NumMatrices 1; mqVersion; endTell; getWindow; tell It; suppress; setResourcesState false false 100; setPopoutState 300; setExplanationSize 0; setAnnotationSize 0; setFontIncAnnot 0; setFontIncExp 0; setSize 2105 1263; setLocation 0 25; setFont SanSerif; setFontSize 10; getToolPalette; tell It; endTell; desuppress; endTell; getEmployee #mesquite.trees.BasicTreeWindowCoord.BasicTreeWindowCoord; tell It; makeTreeWindow #400027619142302785 #mesquite.trees.BasicTreeWindowMaker.BasicTreeWindowMaker; tell It; suppressEPCResponse; setTreeSource #mesquite.trees.StoredTrees.StoredTrees; tell It; setTreeBlock 1; setTreeBlockID 0171a8631baf1; toggleUseWeights off; endTell; setAssignedID 1056.1587668013153.3914089380382037896; getTreeWindow; tell It; setExplanationSize 30; setAnnotationSize 20; setFontIncAnnot 0; setFontIncExp 0; setSize 2005 1191; setLocation 0 25; setFont SanSerif; setFontSize 10; getToolPalette; tell It; setTool mesquite.trees.BasicTreeWindowMaker.BasicTreeWindow.arrow; endTell; setActive; getTreeDrawCoordinator #mesquite.trees.BasicTreeDrawCoordinator.BasicTreeDrawCoordinator; tell It; suppress; setTreeDrawer #mesquite.trees.BallsNSticks.BallsNSticks; tell It; setSpotDiameter 22; setEdgeWidth 2; orientUp; useDiagonal; toggleBallsInternal on; toggleCosmic off; getEmployee #mesquite.trees.NodeLocsStandard.NodeLocsStandard; tell It; branchLengthsToggle off; toggleScale on; toggleBroadScale off; toggleCenter off; toggleEven off; setFixedTaxonDistance 0; endTell; endTell; setBackground White; setBranchColor Black; showNodeNumbers off; showBranchColors on; labelBranchLengths off; centerBrLenLabels on; showBrLensUnspecified on; showBrLenLabelsOnTerminals on; setBrLenLabelColor 0 0 255; setNumBrLenDecimals 6; setSelectedTaxonHighlightMode 1; desuppress; getEmployee #mesquite.trees.BasicDrawTaxonNames.BasicDrawTaxonNames; tell It; setColor Black; setTaxonNameStyler #mesquite.trees.NoColorForTaxon.NoColorForTaxon; toggleShadePartition off; toggleShowFootnotes on; toggleNodeLabels on; toggleCenterNodeNames off; toggleShowNames on; namesAngle ?; endTell; endTell; setTreeNumber 1; setTree '((1:0.004520862699999999,2:0.0000001):0.007374477100000002,(3:0.0000001,(((4:0.0034911243000000005,5:0.0036651003):0.008915131100000001,((6:0.0000001,(7:0.0000001,8:0.0008702263999999999):0.0031380029000000003):0.012376403900000001,((9:0.0006221120000000002,10:0.0000001):0.0000001,(11:0.0000001,(12:0.00008735519999999997,(13:0.0008260610999999999,14:0.0000001):0.0000001):0.0003186008999999999):0.0016043580000000002):0.012359293700000001):0.0000001):0.0000001,((15:0.0000001,(16:0.0000001,((17:0.0007476014999999998,18:0.0000001):0.0000001,((19:0.00016566559999999994,20:0.0000001):0.0000001,(21:0.0000001,22:0.00039031259999999985):0.00001619610000000004):0.0008988145999999999):0.0011020976):0.0019429799000000004):0.0014412551999999999,(((23:0.0013560732999999998,24:0.0000001):0.0007857455000000006,(25:0.0005037295999999998,(26:0.0000001,((27:0.0000001,28:0.0005696685000000001):0.0000001,(29:0.0006489855,30:0.0000001):0.00018151490000000011):0.0011141862999999998):0.0000001):0.0025726967000000004):0.0019594821,(31:0.0003057559999999999,(32:0.0030222954000000005,((33:0.0000001,34:0.0013846285000000003):0.0000001,((35:0.0000001,36:0.0011484444):0.00013730889999999992,(37:0.0011261198,(((38:0.0000001,39:0.0009854663):0.0014161858999999998,(40:0.0000001,(41:0.00029558699999999993,42:0.0000001):0.0013470549999999998):0.0000001):0.0000001,((43:0.00013680390000000032,44:0.0000001):0.0003184336999999997,(45:0.00029575279999999966,((46:0.0000001,47:0.00027512710000000004):0.0008318804999999999,(48:0.0005574572,((49:0.0000001,(50:0.0000001,(51:0.0002915086999999998,52:0.0000001):0.0002965807000000003):0.0009401099999999996):0.0000001,(53:0.0001269776999999997,(54:0.0008532158999999999,(58:0.0000001,(59:0.0011559535,(56:0.0000001,(55:0.0000001,57:0.00011800640000000006):0.0008756682999999999):0.0000001):0.0000932648999999999):0.0000001):0.0000001):0.00029022529999999996):0.0000001):0.0000001):0.0000001):0.0000001):0.0005452598):0.0000001):0.0000001):0.0035739640000000002):0.0000001):0.0000001):0.0000001):0.0000001):0.010365341400000002):0.0048891725):0.0000001):0.0225013426;'; setDrawingSizeMode 0; toggleLegendFloat on; scale 0; toggleTextOnTree off; togglePrintName off; showWindow; newAssistant #mesquite.ancstates.TraceCharacterHistory.TraceCharacterHistory; tell It; suspend ; setDisplayMode #mesquite.ancstates.ShadeStatesOnTree.ShadeStatesOnTree; tell It; toggleLabels off; togglePredictions off; toggleGray off; endTell; setHistorySource #mesquite.ancstates.RecAncestralStates.RecAncestralStates; tell It; getCharacterSource #mesquite.charMatrices.CharSrcCoordObed.CharSrcCoordObed; tell It; setCharacterSource #mesquite.charMatrices.StoredCharacters.StoredCharacters; tell It; setDataSet #6210975684302165577; endTell; endTell; setMethod #mesquite.stochchar.MargProbAncStates.MargProbAncStates; tell It; setModelSource #mesquite.stochchar.CurrentProbModels.CurrentProbModels; getEmployee #mesquite.stochchar.zMargLikeCateg.zMargLikeCateg; tell It; setReportMode Proportional_Likelihoods; setRootMode Use_Root_State_Frequencies_as_Prior; setDecision 2.0; setUnderflowCheckFreq 2; endTell; endTell; toggleShowSelectedOnly off; endTell; setCharacter 9; setMapping 1; toggleShowLegend on; setColorMode 1; toggleWeights on; setInitialOffsetX 4; setInitialOffsetY -317; setLegendWidth 142; setLegendHeight 177; resume ; endTell; endTell; desuppressEPCResponse; getEmployee #mesquite.trees.ColorBranches.ColorBranches; tell It; setColor Red; removeColor off; endTell; getEmployee #mesquite.ornamental.BranchNotes.BranchNotes; tell It; setAlwaysOn off; endTell; getEmployee #mesquite.ornamental.ColorTreeByPartition.ColorTreeByPartition; tell It; colorByPartition off; endTell; getEmployee #mesquite.ornamental.DrawTreeAssocDoubles.DrawTreeAssocDoubles; tell It; setOn on; toggleShow consensusFrequency; toggleShow posteriorProbability; toggleShow bootstrapFrequency; toggleShow consensusFrequency; toggleShow posteriorProbability; toggleShow bootstrapFrequency; setDigits 0; setThreshold ?; writeAsPercentage on; toggleCentred off; toggleHorizontal on; toggleWhiteEdges off; toggleShowOnTerminals off; setFontSize 10; setOffset -2 9; endTell; getEmployee #mesquite.ornamental.DrawTreeAssocStrings.DrawTreeAssocStrings; tell It; setOn on; toggleCentred on; toggleHorizontal on; setFontSize 10; setOffset 0 0; toggleShowOnTerminals on; endTell; getEmployee #mesquite.trees.TreeInfoValues.TreeInfoValues; tell It; panelOpen false; endTell; endTell; endTell; getEmployee #mesquite.charMatrices.BasicDataWindowCoord.BasicDataWindowCoord; tell It; showDataWindow #6210975684302165577 #mesquite.charMatrices.BasicDataWindowMaker.BasicDataWindowMaker; tell It; getWindow; tell It; setExplanationSize 30; setAnnotationSize 20; setFontIncAnnot 0; setFontIncExp 0; setSize 2005 1191; setLocation 0 25; setFont SanSerif; setFontSize 10; getToolPalette; tell It; setTool mesquite.charMatrices.BasicDataWindowMaker.BasicDataWindow.ibeam; endTell; setTool mesquite.charMatrices.BasicDataWindowMaker.BasicDataWindow.ibeam; colorCells #mesquite.charMatrices.NoColor.NoColor; colorRowNames #mesquite.charMatrices.TaxonGroupColor.TaxonGroupColor; colorColumnNames #mesquite.charMatrices.CharGroupColor.CharGroupColor; colorText #mesquite.charMatrices.NoColor.NoColor; setBackground White; toggleShowNames on; toggleShowTaxonNames on; toggleTight off; toggleThinRows off; toggleShowChanges on; toggleSeparateLines off; toggleShowStates on; toggleAutoWCharNames on; toggleAutoTaxonNames off; toggleShowDefaultCharNames off; toggleConstrainCW on; toggleBirdsEye off; toggleShowPaleGrid off; toggleShowPaleCellColors off; toggleShowPaleExcluded off; togglePaleInapplicable on; togglePaleMissing off; toggleShowBoldCellText off; toggleAllowAutosize on; toggleColorsPanel off; toggleDiagonal on; setDiagonalHeight 80; toggleLinkedScrolling on; toggleScrollLinkedTables off; endTell; showWindow; getWindow; tell It; forceAutosize; endTell; getEmployee #mesquite.charMatrices.AlterData.AlterData; tell It; toggleBySubmenus off; endTell; getEmployee #mesquite.charMatrices.ColorByState.ColorByState; tell It; setStateLimit 9; toggleUniformMaximum on; endTell; getEmployee #mesquite.charMatrices.ColorCells.ColorCells; tell It; setColor Red; removeColor off; endTell; getEmployee #mesquite.categ.StateNamesStrip.StateNamesStrip; tell It; showStrip off; endTell; getEmployee #mesquite.charMatrices.AnnotPanel.AnnotPanel; tell It; togglePanel off; endTell; getEmployee #mesquite.charMatrices.CharReferenceStrip.CharReferenceStrip; tell It; showStrip off; endTell; getEmployee #mesquite.charMatrices.QuickKeySelector.QuickKeySelector; tell It; autotabOff; endTell; getEmployee #mesquite.charMatrices.SelSummaryStrip.SelSummaryStrip; tell It; showStrip off; endTell; getEmployee #mesquite.categ.SmallStateNamesEditor.SmallStateNamesEditor; tell It; panelOpen true; endTell; endTell; endTell; endTell; end;