README File for Ensminger et al, 2012 Dryad Digital Repository submission: DESCRIPTION OF CONTENTS: A collection of 16 fastq formatted Illumina reads from the resequencing of experimentally adapted strains of L. pneumophila. All are from single-end reads, except for d346A1 and d346B1, as noted below. Quality formatting, for consistency between libraries sequenced using different Illumina pipelines, has been converted to the sanger-style format. FILE LIST: d0.sanger.fastq: Single-end Illumina library of the wild-type Lp01 progenitor, with an integrated pAhpC::lux plasmid. d133A1.sanger.fastq: Single-end Illumina library of a clone from the A lineage after 133 days of continuous passage through primary A/J mouse macrophages. d200A1.sanger.fastq: Single-end Illumina library of a clone from the A lineage after 200 days of continuous passage through primary A/J mouse macrophages. d314A1.sanger.fastq: Single-end Illumina library of a clone from the A lineage after 314 days of continuous passage through primary A/J mouse macrophages. d346A1.sanger.1.fastq: Paired-end, forward read of an Illumina library of a clone from the A lineage after 346 days of continuous passage through primary A/J mouse macrophages. d346A1.sanger.2.fastq: Paired-end, reverse read of an Illumina library of a clone from the A lineage after 346 days of continuous passage through primary A/J mouse macrophages. d133B1.sanger.fastq: Single-end Illumina library of a clone from the B lineage after 133 days of continuous passage through primary A/J mouse macrophages. d314B1.sanger.fastq: Single-end Illumina library of a clone from the B lineage after 314 days of continuous passage through primary A/J mouse macrophages. d346B1.sanger.1.fastq: Paired-end, forward read of an Illumina library of a clone from the B lineage after 346 days of continuous passage through primary A/J mouse macrophages. d346B1.sanger.2.fastq: Paired-end, reverse read of an Illumina library of a clone from the B lineage after 346 days of continuous passage through primary A/J mouse macrophages. d90C1.sanger.fastq: Single-end Illumina library of a clone from the C lineage after 90 days of continuous passage through primary A/J mouse macrophages. d180C1.sanger.fastq: Single-end Illumina library of a clone from the C lineage after 180 days of continuous passage through primary A/J mouse macrophages. d180C3.sanger.fastq: Single-end Illumina library of a fleN+ clone from the C lineage after 180 days of continuous passage through primary A/J mouse macrophages. d45D1.sanger.fastq: Single-end Illumina library of a clone from the D lineage after 45 days of continuous passage through primary A/J mouse macrophages. d90D1.sanger.fastq: Single-end Illumina library of a clone from the D lineage after 90 days of continuous passage through primary A/J mouse macrophages. d180D1.sanger.fastq: Single-end Illumina library of a clone from the D lineage after 180 days of continuous passage through primary A/J mouse macrophages.