####ANOVA model > mf<-aov(rating~line+rep+plant %in% rep, data=f) > summary(mf) Df Sum Sq Mean Sq F value Pr(>F) line 24 18576 774.0 6.379 7.34e-14 *** rep 1 103 103.0 0.849 0.358 rep:plant 6 267 44.6 0.367 0.899 Residuals 165 20021 121.3 --- Signif. codes: 0 ‘***’ 0.001 ‘**’ 0.01 ‘*’ 0.05 ‘.’ 0.1 ‘ ’ 1 3 observations deleted due to missingness ####LSD results > print(LSD.test(mf,'line')) $statistics Mean CV MSerror 19.16244 57.4842 121.3384 $parameters Df ntr t.value alpha test name.t 165 25 1.974446 0.05 Fisher-LSD line $means rating std r LCL UCL Min Max blue_max 21.250000 6.408699 8 13.5604773 28.93952 15 30 line223 2.875000 3.522884 8 -4.8145227 10.56452 0 10 top_bunch 16.875000 12.229210 8 9.1854773 24.56452 5 45 v010 20.000000 11.019463 8 12.3104773 27.68952 10 40 v017 31.875000 11.319231 8 24.1854773 39.56452 20 55 v020 20.625000 10.500850 8 12.9354773 28.31452 10 40 v029 24.375000 14.500616 8 16.6854773 32.06452 5 45 v031 15.625000 10.500850 8 7.9354773 23.31452 5 35 v033 26.250000 24.892627 8 18.5604773 33.93952 5 80 v035 20.625000 12.082307 8 12.9354773 28.31452 10 40 v037 15.000000 10.350983 8 7.3104773 22.68952 5 30 v038 15.625000 9.038608 8 7.9354773 23.31452 5 25 v039 28.125000 14.126343 8 20.4354773 35.81452 5 55 v041 28.125000 11.933596 8 20.4354773 35.81452 10 40 v056 55.000000 11.902381 7 46.7795545 63.22045 45 80 v057 14.375000 6.781013 8 6.6854773 22.06452 5 25 v057-1 8.125000 3.720119 8 0.4354773 15.81452 5 15 v057-2 9.375000 3.204350 8 1.6854773 17.06452 5 15 v073 17.500000 11.649647 8 9.8104773 25.18952 5 35 v073-1 21.875000 9.613049 8 14.1854773 29.56452 10 40 v073-2 11.500000 10.650285 8 3.8104773 19.18952 1 30 v073-3 16.428571 9.449112 7 8.2081259 24.64902 5 35 v073-4 9.285714 3.450328 7 1.0652688 17.50616 5 15 v097 20.625000 9.797048 8 12.9354773 28.31452 10 40 v113 10.625000 4.172615 8 2.9354773 18.31452 5 15 $comparison NULL $groups trt means M 1 v056 55.000000 a 2 v017 31.875000 b 3 v039 28.125000 bc 4 v041 28.125000 bc 5 v033 26.250000 bcd 6 v029 24.375000 bcde 7 v073-1 21.875000 bcdef 8 blue_max 21.250000 bcdefg 9 v020 20.625000 cdefg 10 v035 20.625000 cdefg 11 v097 20.625000 cdefg 12 v010 20.000000 cdefgh 13 v073 17.500000 cdefghi 14 top_bunch 16.875000 defghi 15 v073-3 16.428571 defghi 16 v031 15.625000 defghi 17 v038 15.625000 defghi 18 v037 15.000000 efghi 19 v057 14.375000 efghi 20 v073-2 11.500000 fghij 21 v113 10.625000 ghij 22 v057-2 9.375000 hij 23 v073-4 9.285714 hij 24 v057-1 8.125000 ij 25 line223 2.875000 j