####ANOVA model > mh<-aov(rating~line+rep+plant %in% rep, data=h) > summary(mh) Df Sum Sq Mean Sq F value Pr(>F) line 23 9981 434.0 2.481 0.000539 *** rep 1 1528 1528.1 8.738 0.003604 ** rep:plant 6 1064 177.3 1.014 0.418574 Residuals 155 27108 174.9 --- Signif. codes: 0 ‘***’ 0.001 ‘**’ 0.01 ‘*’ 0.05 ‘.’ 0.1 ‘ ’ 1 6 observations deleted due to missingness ####LSD results > print(LSD.test(mh,'line')) $statistics Mean CV MSerror 18.60753 71.07099 174.8888 $parameters Df ntr t.value alpha test name.t 155 24 1.975387 0.05 Fisher-LSD line $means rating std r LCL UCL Min Max blue_max 13.75000 6.408699 8 4.5139086 22.98609 5 25 line223 2.37500 2.199838 8 -6.8610914 11.61109 0 5 top_bunch 16.87500 7.529703 8 7.6389086 26.11109 10 30 v010 13.12500 5.938675 8 3.8889086 22.36109 5 20 v017 23.75000 23.260942 8 14.5139086 32.98609 10 80 v020 18.33333 9.309493 6 7.6684136 28.99825 5 30 v029 23.57143 23.401262 7 13.6976315 33.44523 5 75 v031 18.12500 16.243130 8 8.8889086 27.36109 5 50 v033 23.75000 26.558561 8 14.5139086 32.98609 5 85 v035 15.62500 10.835622 8 6.3889086 24.86109 5 40 v037 24.28571 10.578505 7 14.4119172 34.15951 10 40 v038 22.50000 20.000000 8 13.2639086 31.73609 5 60 v039 19.16667 16.857244 6 8.5017469 29.83159 5 45 v041 21.87500 14.865468 8 12.6389086 31.11109 10 50 v056 26.25000 16.420806 8 17.0139086 35.48609 15 65 v057 18.75000 9.161254 8 9.5139086 27.98609 5 30 v057-1 10.62500 3.204350 8 1.3889086 19.86109 5 15 v057-2 12.50000 5.976143 8 3.2639086 21.73609 5 20 v073 17.62500 11.746580 8 8.3889086 26.86109 1 40 v073-1 16.87500 6.512351 8 7.6389086 26.11109 10 30 v073-2 17.50000 7.559289 8 8.2639086 26.73609 10 30 v073-3 41.87500 16.889874 8 32.6389086 51.11109 15 65 v097 19.37500 6.232117 8 10.1389086 28.61109 15 30 v113 9.50000 8.053393 8 0.2639086 18.73609 0 25 $comparison NULL $groups trt means M 1 v073-3 41.87500 a 2 v056 26.25000 b 3 v037 24.28571 bc 4 v017 23.75000 bc 5 v033 23.75000 bc 6 v029 23.57143 bcd 7 v038 22.50000 bcde 8 v041 21.87500 bcde 9 v097 19.37500 bcde 10 v039 19.16667 bcde 11 v057 18.75000 bcde 12 v020 18.33333 bcde 13 v031 18.12500 bcde 14 v073 17.62500 bcde 15 v073-2 17.50000 bcde 16 top_bunch 16.87500 bcde 17 v073-1 16.87500 bcde 18 v035 15.62500 bcde 19 blue_max 13.75000 bcdef 20 v010 13.12500 cdef 21 v057-2 12.50000 cdef 22 v057-1 10.62500 def 23 v113 9.50000 ef 24 line223 2.37500 f