Next generation sequencing data of Quercus spp. amplicons Genomic DNA of Quercus robur (the scientific name for pedunculate oak) and Quercus petraea (the scientific name for sessile oak) was PCR amplified using primer pairs for 10 drought induced gene fragments. Hexanucleotide barcodes were introduced to identify individual sequences and DNA was combined to eight sequencing pools. Amplicons were sequenced with Roche 454 pyrosequencing on GS FLX Titanium. Each zip archive contains the sequencing raw data in sff file format: NG-5357_OAK1_sequence.zip Sequencing pool 1 NG-5357_OAK2_sequence.zip Sequencing pool 2 NG-5357_OAK3_sequence.zip Sequencing pool 3 NG-5357_OAK4_sequence.zip Sequencing pool 4 NG-5357_OAK5_sequence.zip Sequencing pool 5 NG-5357_OAK6_sequence.zip Sequencing pool 6 NG-5357_OAK7_sequence.zip Sequencing pool 7 NG-5357_OAK8_sequence.zip Sequencing pool 8 Additional files associated: OAK_454_barcodes.txt Assignment of hexanucleotide barcode sequences to single Quercus spp. individuals OAK_454_primer.txt 5'-primer sequences for identification of drought induced gene fragments