#example blueprint file #input setting popid: Conness_SNP # id of the population (no white space) nseq: 64 # number of sequences L: 1911420 # total number of observed nucleic sites, including polymorphic and monomorphic whether_folded: true # whethr the SFS is folded (true or false) SFS: 467 344 168 208 161 203 171 174 160 155 139 160 113 119 116 133 126 107 137 129 110 84 95 132 126 123 96 115 123 120 137 95 # snp frequency spectrum: number of singleton, number of doubleton, etc. (separated by white space) #smallest_size_of_SFS_bin_used_for_estimation: 2 # default is 1; to ignore singletons, change this number to 2 #largest_size_of_SFS_bin_used_for_estimation: 32 # default is nseq/2 for folded SFS pct_training: 0.67 # percentage of sites for training nrand: 16 31 47 62 # number of random break points for each try (separated by white space) project_dir: Conness_SNP # project directory stairway_plot_dir: stairway_plot_es # directory to the stairway plot files ninput: 200 # number of input files to be created for each estimation #output setting mu: 2.8e-9 # assumed mutation rate per site per generation year_per_generation: 1 # assumed generation time (in years) #plot setting plot_title: Conness_SNP # title of the plot xrange: 1,1000 # Time (1k year) range; format: xmin,xmax; "0,0" for default yrange: 0,0 # Ne (1k individual) range; format: xmin,xmax; "0,0" for default xspacing: 2 # X axis spacing yspacing: 2 # Y axis spacing fontsize: 12 # Font size