Files Included: Tolerance and Cytokine Data.csv Pathology and Path_Load.csv Antibodies.csv Activity.csv Fever.csv For all files: Data are formatted for analysis in R. NA = no data Tolerance and Cytokine Data.csv: Measurement_Num: 0 = pre-innoculation measurement, 1 = post-innoculation measurement Log_PathLoad_Max: the highest value of log10(pathogen load +1), summed from both eyes, across from either pre- or post-innoculation Total_Eye_Max: the highest value of eye score, summed from both eyes, across from either pre- or post-innoculation Mass_Ch_Min: the lowest value of mass change from either pre- or post-inoculation, pre- always being 0, expressed in grams Integral_Log_PathLoad: the integral over time of log10(pathogen load +1), summed from both eyes, from post-innoculation Integral_Total_Eye: the integral over time of eye score, summed from both eyes, from post-innoculation Integral_Mass_Ch: the integral over time of mass change from post-innoculation IL_1_over_GAPDH: expression of IL-1beta mRNA normalized to GAPDH mRNA, taken from whole blood at 24hrs post-inoculation IL_10_over_GAPDH: expression of IL-10 mRNA normalized to GAPDH mRNA, taken from whole blood at 24hrs post-inoculation Pathology and Path_Load.csv: Days_PI: days post inoculation Days_PI_for_Integrals: Adjusts the pre-inoculation time point to 0 days_PI for the purposes of calculating integrals of pathology and pathogen load. This was done b/c using -7 for the pre-inoculation time point would bias metrics higher than actual values due to the manner in which integrals were calculated. Mass: in grams Tx_Mass: the mass in grams of each bird's radiotransmitter Tx_On: whether the bird was wearing a radiotransmitter when it was weighed Mass_less_Tx: Bird mass minus transmitter mass Mass_Ch: change in mass from pre-inoculation, calculated using the Mass_less_Tx column L_ or R_: data for left or right eye, respectively Log10_Pathload_plus1: log10(pathogen load + 1), eliminates problem of log transforming pathogen load values of 0 Antibodies.csv: ELISA_Value: calculated using absorbance at 630nm as follows: (sample_mean-blank)/(positive_control-blank) Activity.csv: Prop_Act: The proportion of daylight spent active Fever.csv: Temp_Ch: change in nocturnal temperature based upon difference from pre-inoculation days