================================================== file name: kmer70-v2-min200-scaffolds.fa sequences: 42926 total length: 1548489457 bp (1171559178 bp excl N/X-runs) GC level: 41.66 % bases masked: 64753768 bp ( 4.18 %) ================================================== number of length percentage elements* occupied of sequence -------------------------------------------------- SINEs: 14015 1648661 bp 0.11 % ALUs 15 866 bp 0.00 % MIRs 10474 1151635 bp 0.07 % LINEs: 110425 35438610 bp 2.29 % LINE1 3329 219399 bp 0.01 % LINE2 8766 1271901 bp 0.08 % L3/CR1 92484 33438421 bp 2.16 % LTR elements: 77485 18917633 bp 1.22 % ERVL 41346 15747161 bp 1.02 % ERVL-MaLRs 57 3331 bp 0.00 % ERV_classI 7633 1228418 bp 0.08 % ERV_classII 2600 272991 bp 0.02 % DNA elements: 66217 7387122 bp 0.48 % hAT-Charlie 1716 177068 bp 0.01 % TcMar-Tigger 543 84619 bp 0.01 % Unclassified: 7716 968382 bp 0.06 % Total interspersed repeats: 64360408 bp 4.16 % Small RNA: 7 1355 bp 0.00 % Satellites: 2450 263350 bp 0.02 % Simple repeats: 1343 282671 bp 0.02 % Low complexity: 205 42990 bp 0.00 % ================================================== * most repeats fragmented by insertions or deletions have been counted as one element The query species was assumed to be homo RepeatMasker version open-4.0.2 , default mode run with blastp version 3.0PE-AB [2009-10-30] [linux26-x64-I32LPF64 2009-11-17T18:52:53] The query was compared to classified sequences in ".../RepeatMaskerLib.embl.lib" RepBase Update 20130422, RM database version 20130422