Locus Identifier Gene Model Name Gene Model Description Gene Model Type Primary Gene Symbol All Gene Symbols AT3G12900 AT3G12900.1 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein; FUNCTIONS IN: oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen, 2-oxoglutarate as one donor, and incorporation of one atom each of oxygen into both donors, oxidoreductase activity; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: root; CONTAINS InterPro DOMAIN/s: Oxoglutarate/iron-dependent oxygenase (InterPro:IPR005123); BEST Arabidopsis thaliana protein match is: 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (TAIR:AT1G55290.1); Has 8653 Blast hits to 8615 proteins in 1001 species: Archae - 0; Bacteria - 1126; Metazoa - 119; Fungi - 1049; Plants - 4930; Viruses - 0; Other Eukaryotes - 1429 (source: NCBI BLink). protein_coding AT3G12450 AT3G12450.1 pseudogene of 3'-5' exonuclease containing protein pseudogene AT3G12420 AT3G12420.1 Polynucleotidyl transferase, ribonuclease H-like superfamily protein; FUNCTIONS IN: nucleic acid binding; EXPRESSED IN: sperm cell; CONTAINS InterPro DOMAIN/s: Polynucleotidyl transferase, ribonuclease H fold (InterPro:IPR012337); BEST Arabidopsis thaliana protein match is: Polynucleotidyl transferase, ribonuclease H-like superfamily protein (TAIR:AT3G12410.1); Has 186 Blast hits to 178 proteins in 20 species: Archae - 0; Bacteria - 0; Metazoa - 3; Fungi - 8; Plants - 175; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). protein_coding AT3G11950 AT3G11950.1 publications Tian et al (2007) and Sadre et al (2006) refer to At3g11950. The prenyltransferase gene studied is actually At3g11945 which arises from a split of the previous At3g11950 gene model. protein_coding AT3G12840 AT3G12840.1 unknown protein; Has 0 Blast hits to 0 proteins in 0 species (source: NCBI BLink). protein_coding AT3G12850 AT3G12850.1 COP9 signalosome complex-related / CSN complex-related; BEST Arabidopsis thaliana protein match is: 26S proteasome, regulatory subunit Rpn7;Proteasome component (PCI) domain (TAIR:AT3G61140.1); Has 103 Blast hits to 103 proteins in 41 species: Archae - 0; Bacteria - 0; Metazoa - 36; Fungi - 2; Plants - 53; Viruses - 0; Other Eukaryotes - 12 (source: NCBI BLink). protein_coding AT3G12050 AT3G12050.1 Aha1 domain-containing protein; FUNCTIONS IN: ATPase activator activity, chaperone binding; INVOLVED IN: response to stress; LOCATED IN: cytoplasm; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 16 growth stages; CONTAINS InterPro DOMAIN/s: Activator of Hsp90 ATPase, N-terminal (InterPro:IPR015310), Activator of Hsp90 ATPase homologue 1-like (InterPro:IPR013538); Has 600 Blast hits to 579 proteins in 214 species: Archae - 0; Bacteria - 24; Metazoa - 217; Fungi - 180; Plants - 73; Viruses - 0; Other Eukaryotes - 106 (source: NCBI BLink). protein_coding AT3G12345 AT3G12345.1 unknown protein; LOCATED IN: chloroplast; Has 35333 Blast hits to 34131 proteins in 2444 species: Archae - 798; Bacteria - 22429; Metazoa - 974; Fungi - 991; Plants - 531; Viruses - 0; Other Eukaryotes - 9610 (source: NCBI BLink). protein_coding AT3G12585 AT3G12585.1 pre-tRNA; tRNA-Arg (anticodon: CCG) pre_trna AT3G12020 AT3G12020.2 P-loop containing nucleoside triphosphate hydrolases superfamily protein; FUNCTIONS IN: microtubule motor activity, ATP binding; INVOLVED IN: microtubule-based movement; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Kinesin, motor region, conserved site (InterPro:IPR019821), Kinesin, motor domain (InterPro:IPR001752); BEST Arabidopsis thaliana protein match is: P-loop containing nucleoside triphosphate hydrolases superfamily protein (TAIR:AT5G06670.1). protein_coding AT3G11780 AT3G11780.2 MD-2-related lipid recognition domain-containing protein / ML domain-containing protein; CONTAINS InterPro DOMAIN/s: MD-2-related lipid-recognition (InterPro:IPR003172), Protein of unknown function DUF907, fungi (InterPro:IPR010308); BEST Arabidopsis thaliana protein match is: Immunoglobulin E-set superfamily protein (TAIR:AT5G06480.1). protein_coding AT3G12830 AT3G12830.1 SAUR-like auxin-responsive protein family ; CONTAINS InterPro DOMAIN/s: Auxin responsive SAUR protein (InterPro:IPR003676); BEST Arabidopsis thaliana protein match is: SAUR-like auxin-responsive protein family (TAIR:AT1G56150.1); Has 1206 Blast hits to 1201 proteins in 26 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 1205; Viruses - 0; Other Eukaryotes - 1 (source: NCBI BLink). protein_coding AT3G11773 AT3G11773.2 Thioredoxin superfamily protein; FUNCTIONS IN: electron carrier activity, protein disulfide oxidoreductase activity; INVOLVED IN: cell redox homeostasis; LOCATED IN: endomembrane system; CONTAINS InterPro DOMAIN/s: Glutaredoxin (InterPro:IPR002109), Thioredoxin fold (InterPro:IPR012335), Thioredoxin-like fold (InterPro:IPR012336); BEST Arabidopsis thaliana protein match is: Glutaredoxin family protein (TAIR:AT5G06470.1). protein_coding AT3G11960 AT3G11960.1 Cleavage and polyadenylation specificity factor (CPSF) A subunit protein; FUNCTIONS IN: nucleic acid binding; INVOLVED IN: biological_process unknown; LOCATED IN: nucleus, chloroplast; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Cleavage/polyadenylation specificity factor, A subunit, C-terminal (InterPro:IPR004871); BEST Arabidopsis thaliana protein match is: damaged DNA binding protein 1A (TAIR:AT4G05420.1); Has 1073 Blast hits to 789 proteins in 185 species: Archae - 0; Bacteria - 0; Metazoa - 332; Fungi - 287; Plants - 277; Viruses - 0; Other Eukaryotes - 177 (source: NCBI BLink). protein_coding AT3G11920 AT3G11920.1 glutaredoxin-related; FUNCTIONS IN: electron carrier activity, protein disulfide oxidoreductase activity; INVOLVED IN: intracellular signaling pathway, cell redox homeostasis; LOCATED IN: cellular_component unknown; CONTAINS InterPro DOMAIN/s: Winged helix-turn-helix transcription repressor DNA-binding (InterPro:IPR011991), Thioredoxin fold (InterPro:IPR012335), Glutaredoxin (InterPro:IPR002109), Thioredoxin-like fold (InterPro:IPR012336), DEP domain (InterPro:IPR000591), Protein of unknown function DUF547 (InterPro:IPR006869); BEST Arabidopsis thaliana protein match is: electron carriers;protein disulfide oxidoreductases (TAIR:AT4G08550.1); Has 2850 Blast hits to 2806 proteins in 762 species: Archae - 4; Bacteria - 1389; Metazoa - 366; Fungi - 36; Plants - 426; Viruses - 0; Other Eukaryotes - 629 (source: NCBI BLink). protein_coding AT3G12590 AT3G12590.1 unknown protein; INVOLVED IN: biological_process unknown; LOCATED IN: chloroplast; Has 50 Blast hits to 41 proteins in 15 species: Archae - 0; Bacteria - 0; Metazoa - 2; Fungi - 0; Plants - 43; Viruses - 0; Other Eukaryotes - 5 (source: NCBI BLink). protein_coding AT3G12502 AT3G12502.1 Potential natural antisense gene, locus overlaps with AT3G12500 other_rna AT3G12440 AT3G12440.1 Polynucleotidyl transferase, ribonuclease H-like superfamily protein; FUNCTIONS IN: 3'-5' exonuclease activity, nucleic acid binding; INVOLVED IN: nucleobase, nucleoside, nucleotide and nucleic acid metabolic process; LOCATED IN: intracellular; EXPRESSED IN: 6 plant structures; EXPRESSED DURING: F mature embryo stage, petal differentiation and expansion stage, E expanded cotyledon stage, D bilateral stage; CONTAINS InterPro DOMAIN/s: Polynucleotidyl transferase, ribonuclease H fold (InterPro:IPR012337), 3'-5' exonuclease (InterPro:IPR002562); BEST Arabidopsis thaliana protein match is: Polynucleotidyl transferase, ribonuclease H-like superfamily protein (TAIR:AT3G12460.1); Has 4427 Blast hits to 1756 proteins in 258 species: Archae - 2; Bacteria - 264; Metazoa - 1342; Fungi - 272; Plants - 2053; Viruses - 93; Other Eukaryotes - 401 (source: NCBI BLink). protein_coding AT3G12130 AT3G12130.1 KH domain-containing protein / zinc finger (CCCH type) family protein; CONTAINS InterPro DOMAIN/s: Zinc finger, CCCH-type (InterPro:IPR000571), K Homology (InterPro:IPR004087), K Homology, type 1, subgroup (InterPro:IPR018111), K Homology, type 1 (InterPro:IPR004088); BEST Arabidopsis thaliana protein match is: KH domain-containing protein / zinc finger (CCCH type) family protein (TAIR:AT5G06770.1); Has 1306 Blast hits to 1045 proteins in 139 species: Archae - 0; Bacteria - 4; Metazoa - 726; Fungi - 40; Plants - 423; Viruses - 0; Other Eukaryotes - 113 (source: NCBI BLink). protein_coding AT3G12100 AT3G12100.1 Cation efflux family protein; FUNCTIONS IN: cation transmembrane transporter activity, efflux transmembrane transporter activity; INVOLVED IN: cation transport, response to nematode; LOCATED IN: membrane; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Cation efflux protein (InterPro:IPR002524); BEST Arabidopsis thaliana protein match is: Cation efflux family protein (TAIR:AT2G04620.1); Has 6181 Blast hits to 5813 proteins in 1885 species: Archae - 127; Bacteria - 3950; Metazoa - 1047; Fungi - 487; Plants - 277; Viruses - 0; Other Eukaryotes - 293 (source: NCBI BLink). protein_coding AT3G12190 AT3G12190.1 BEST Arabidopsis thaliana protein match is: Frigida-like protein (TAIR:AT5G27220.1); Has 43637 Blast hits to 24906 proteins in 1566 species: Archae - 743; Bacteria - 4122; Metazoa - 22377; Fungi - 2585; Plants - 1803; Viruses - 158; Other Eukaryotes - 11849 (source: NCBI BLink). protein_coding AT3G12010 AT3G12010.1 FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; EXPRESSED IN: sperm cell, cultured cell; CONTAINS InterPro DOMAIN/s: Colon cancer-associated Mic1-like (InterPro:IPR009755); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink). protein_coding AT3G12350 AT3G12350.1 F-box family protein; CONTAINS InterPro DOMAIN/s: F-box domain, cyclin-like (InterPro:IPR001810), F-box domain, Skp2-like (InterPro:IPR022364); Has 51 Blast hits to 51 proteins in 14 species: Archae - 0; Bacteria - 0; Metazoa - 1; Fungi - 3; Plants - 45; Viruses - 0; Other Eukaryotes - 2 (source: NCBI BLink). protein_coding AT3G11880 AT3G11880.1 Protein of unknown function DUF2359, transmembrane; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF2359, transmembrane (InterPro:IPR019308); BEST Arabidopsis thaliana protein match is: Protein of unknown function DUF2359, transmembrane (TAIR:AT1G70770.2); Has 155 Blast hits to 134 proteins in 26 species: Archae - 0; Bacteria - 0; Metazoa - 47; Fungi - 0; Plants - 108; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). protein_coding AT3G12700 AT3G12700.1 Eukaryotic aspartyl protease family protein; FUNCTIONS IN: aspartic-type endopeptidase activity; INVOLVED IN: proteolysis; LOCATED IN: cellular_component unknown; EXPRESSED IN: 21 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Peptidase aspartic (InterPro:IPR021109), Peptidase aspartic, catalytic (InterPro:IPR009007), Peptidase A1 (InterPro:IPR001461), Peptidase aspartic, active site (InterPro:IPR001969); BEST Arabidopsis thaliana protein match is: Eukaryotic aspartyl protease family protein (TAIR:AT3G25700.1); Has 3537 Blast hits to 3526 proteins in 338 species: Archae - 0; Bacteria - 0; Metazoa - 933; Fungi - 442; Plants - 1963; Viruses - 0; Other Eukaryotes - 199 (source: NCBI BLink). protein_coding AT3G12510 AT3G12510.1 MADS-box family protein; BEST Arabidopsis thaliana protein match is: MADS-box transcription factor family protein (TAIR:AT5G38620.1); Has 66 Blast hits to 66 proteins in 9 species: Archae - 0; Bacteria - 1; Metazoa - 0; Fungi - 0; Plants - 65; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). protein_coding AT3G11830 AT3G11830.1 TCP-1/cpn60 chaperonin family protein; FUNCTIONS IN: unfolded protein binding, ATP binding; INVOLVED IN: response to cadmium ion; LOCATED IN: cellular_component unknown; EXPRESSED IN: 25 plant structures; EXPRESSED DURING: 14 growth stages; CONTAINS InterPro DOMAIN/s: Chaperonin Cpn60/TCP-1 (InterPro:IPR002423), Chaperone, tailless complex polypeptide 1 (InterPro:IPR017998), T-complex protein 1, eta subunit (InterPro:IPR012720), Chaperonin TCP-1, conserved site (InterPro:IPR002194); BEST Arabidopsis thaliana protein match is: T-complex protein 1 alpha subunit (TAIR:AT3G20050.1); Has 19825 Blast hits to 19758 proteins in 3880 species: Archae - 808; Bacteria - 8913; Metazoa - 2158; Fungi - 1512; Plants - 862; Viruses - 0; Other Eukaryotes - 5572 (source: NCBI BLink). protein_coding AT3G12620 AT3G12620.1 Protein phosphatase 2C family protein; FUNCTIONS IN: protein serine/threonine phosphatase activity, catalytic activity; INVOLVED IN: protein amino acid dephosphorylation; LOCATED IN: protein serine/threonine phosphatase complex; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Protein phosphatase 2C, manganese/magnesium aspartate binding site (InterPro:IPR000222), Protein phosphatase 2C-related (InterPro:IPR001932), Protein phosphatase 2C (InterPro:IPR015655), Protein phosphatase 2C, N-terminal (InterPro:IPR014045); BEST Arabidopsis thaliana protein match is: Protein phosphatase 2C family protein (TAIR:AT3G55050.2); Has 5481 Blast hits to 5477 proteins in 322 species: Archae - 0; Bacteria - 80; Metazoa - 1469; Fungi - 574; Plants - 2401; Viruses - 2; Other Eukaryotes - 955 (source: NCBI BLink). protein_coding AT3G12040 AT3G12040.1 DNA-3-methyladenine glycosylase (MAG); FUNCTIONS IN: DNA binding, alkylbase DNA N-glycosylase activity, catalytic activity; INVOLVED IN: base-excision repair; LOCATED IN: cellular_component unknown; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 14 growth stages; CONTAINS InterPro DOMAIN/s: Methylpurine-DNA glycosylase (MPG) (InterPro:IPR003180), Formyl transferase, C-terminal-like (InterPro:IPR011034); Has 2384 Blast hits to 2384 proteins in 1044 species: Archae - 26; Bacteria - 1995; Metazoa - 85; Fungi - 6; Plants - 30; Viruses - 0; Other Eukaryotes - 242 (source: NCBI BLink). protein_coding AT3G11825 AT3G11825.1 Encodes a Protease inhibitor/seed storage/LTP family protein protein_coding AT3G12290 AT3G12290.1 Amino acid dehydrogenase family protein; FUNCTIONS IN: binding, catalytic activity; INVOLVED IN: folic acid and derivative biosynthetic process, metabolic process; LOCATED IN: chloroplast; EXPRESSED IN: 25 plant structures; EXPRESSED DURING: 14 growth stages; CONTAINS InterPro DOMAIN/s: Tetrahydrofolate dehydrogenase/cyclohydrolase, NAD(P)-binding domain (InterPro:IPR020631), Tetrahydrofolate dehydrogenase/cyclohydrolase (InterPro:IPR000672), NAD(P)-binding domain (InterPro:IPR016040), Tetrahydrofolate dehydrogenase/cyclohydrolase, conserved site (InterPro:IPR020867), Tetrahydrofolate dehydrogenase/cyclohydrolase, catalytic domain (InterPro:IPR020630); BEST Arabidopsis thaliana protein match is: Amino acid dehydrogenase family protein (TAIR:AT4G00620.1); Has 9969 Blast hits to 9964 proteins in 2781 species: Archae - 105; Bacteria - 5648; Metazoa - 394; Fungi - 308; Plants - 157; Viruses - 0; Other Eukaryotes - 3357 (source: NCBI BLink). protein_coding AT3G12835 AT3G12835.1 unknown protein; Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink). protein_coding AT3G12150 AT3G12150.1 unknown protein; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF2048 (InterPro:IPR019149); Has 421 Blast hits to 334 proteins in 155 species: Archae - 2; Bacteria - 147; Metazoa - 215; Fungi - 0; Plants - 43; Viruses - 0; Other Eukaryotes - 14 (source: NCBI BLink). protein_coding AT3G12470 AT3G12470.1 Polynucleotidyl transferase, ribonuclease H-like superfamily protein; FUNCTIONS IN: nucleic acid binding; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: sperm cell, seed; EXPRESSED DURING: E expanded cotyledon stage; CONTAINS InterPro DOMAIN/s: Polynucleotidyl transferase, ribonuclease H fold (InterPro:IPR012337); BEST Arabidopsis thaliana protein match is: Polynucleotidyl transferase, ribonuclease H-like superfamily protein (TAIR:AT3G12410.1); Has 210 Blast hits to 197 proteins in 17 species: Archae - 0; Bacteria - 0; Metazoa - 3; Fungi - 0; Plants - 207; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). protein_coding AT3G12545 AT3G12545.1 Bifunctional inhibitor/lipid-transfer protein/seed storage 2S albumin superfamily protein; CONTAINS InterPro DOMAIN/s: Bifunctional inhibitor/plant lipid transfer protein/seed storage (InterPro:IPR016140); Has 72 Blast hits to 72 proteins in 9 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 72; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). protein_coding AT3G11745 AT3G11745.1 unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: chloroplast; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; Has 5 Blast hits to 5 proteins in 2 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 5; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). protein_coding AT3G11930 AT3G11930.3 Adenine nucleotide alpha hydrolases-like superfamily protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: response to stress; LOCATED IN: cellular_component unknown; EXPRESSED IN: 18 plant structures; EXPRESSED DURING: 9 growth stages; CONTAINS InterPro DOMAIN/s: UspA (InterPro:IPR006016), Rossmann-like alpha/beta/alpha sandwich fold (InterPro:IPR014729), Universal stress protein A (InterPro:IPR006015); BEST Arabidopsis thaliana protein match is: Adenine nucleotide alpha hydrolases-like superfamily protein (TAIR:AT3G58450.1); Has 1302 Blast hits to 1300 proteins in 219 species: Archae - 85; Bacteria - 399; Metazoa - 112; Fungi - 0; Plants - 685; Viruses - 0; Other Eukaryotes - 21 (source: NCBI BLink). protein_coding AT3G11870 AT3G11870.1 Endoribonuclease/protein kinase IRE1-like; FUNCTIONS IN: endoribonuclease activity, producing 5'-phosphomonoesters, protein kinase activity, kinase activity, ATP binding; INVOLVED IN: protein amino acid phosphorylation, mRNA processing; LOCATED IN: endomembrane system; CONTAINS InterPro DOMAIN/s: Protein kinase, catalytic domain (InterPro:IPR000719), KEN domain, ribonuclease activator (InterPro:IPR010513), PUG domain (InterPro:IPR006567), Serine/threonine-protein kinase-like domain (InterPro:IPR017442), Protein kinase-like domain (InterPro:IPR011009); BEST Arabidopsis thaliana protein match is: Endoribonuclease/protein kinase IRE1-like (TAIR:AT2G17520.1); Has 43296 Blast hits to 42939 proteins in 2046 species: Archae - 74; Bacteria - 4886; Metazoa - 17147; Fungi - 4251; Plants - 8096; Viruses - 78; Other Eukaryotes - 8764 (source: NCBI BLink). protein_coding AT3G12540 AT3G12540.1 Protein of unknown function, DUF547; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF547 (InterPro:IPR006869); BEST Arabidopsis thaliana protein match is: Protein of unknown function, DUF547 (TAIR:AT2G39690.1); Has 544 Blast hits to 542 proteins in 72 species: Archae - 7; Bacteria - 26; Metazoa - 31; Fungi - 0; Plants - 446; Viruses - 0; Other Eukaryotes - 34 (source: NCBI BLink). protein_coding AT3G11810 AT3G11810.1 unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT2G03330.1); Has 141 Blast hits to 141 proteins in 21 species: Archae - 0; Bacteria - 9; Metazoa - 0; Fungi - 0; Plants - 131; Viruses - 0; Other Eukaryotes - 1 (source: NCBI BLink). protein_coding AT3G12143 AT3G12143.1 pseudogene, similar to polygalacturonase-inhibitor protein, blastp match of 53% identity and 7.5e-64 P-value to GP|18148923|dbj|BAB83520.1||AB064545 polygalacturonase-inhibitor protein {Citrus sp. cv. Sainumphung} pseudogene AT3G12340 AT3G12340.1 FKBP-like peptidyl-prolyl cis-trans isomerase family protein; FUNCTIONS IN: FK506 binding, peptidyl-prolyl cis-trans isomerase activity; INVOLVED IN: protein folding; LOCATED IN: chloroplast thylakoid lumen; EXPRESSED IN: 20 plant structures; EXPRESSED DURING: 11 growth stages; CONTAINS InterPro DOMAIN/s: Peptidyl-prolyl cis-trans isomerase, FKBP-type (InterPro:IPR001179); BEST Arabidopsis thaliana protein match is: FK506 BINDING PROTEIN 53 (TAIR:AT4G25340.1); Has 13564 Blast hits to 11813 proteins in 1771 species: Archae - 96; Bacteria - 5418; Metazoa - 3305; Fungi - 956; Plants - 1045; Viruses - 29; Other Eukaryotes - 2715 (source: NCBI BLink). protein_coding AT3G12260 AT3G12260.1 LYR family of Fe/S cluster biogenesis protein; FUNCTIONS IN: catalytic activity; LOCATED IN: mitochondrion, respiratory chain complex I, membrane; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 14 growth stages; Has 252 Blast hits to 252 proteins in 114 species: Archae - 0; Bacteria - 0; Metazoa - 119; Fungi - 50; Plants - 50; Viruses - 0; Other Eukaryotes - 33 (source: NCBI BLink). protein_coding AT3G12775 AT3G12775.1 ubiquitin-conjugating enzyme family protein; BEST Arabidopsis thaliana protein match is: ubiquitin-conjugating enzyme 23 (TAIR:AT2G16920.1); Has 166 Blast hits to 164 proteins in 19 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 6; Plants - 158; Viruses - 0; Other Eukaryotes - 2 (source: NCBI BLink). protein_coding AT3G11760 AT3G11760.1 unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 14 growth stages; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT5G04860.1); Has 84 Blast hits to 73 proteins in 13 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 84; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). protein_coding AT3G12860 AT3G12860.1 NOP56-like pre RNA processing ribonucleoprotein; CONTAINS InterPro DOMAIN/s: Pre-mRNA processing ribonucleoprotein, snoRNA-binding domain (InterPro:IPR002687), NOP5, N-terminal (InterPro:IPR012974), NOSIC (InterPro:IPR012976); BEST Arabidopsis thaliana protein match is: homolog of nucleolar protein NOP56 (TAIR:AT1G56110.1); Has 9295 Blast hits to 5418 proteins in 524 species: Archae - 248; Bacteria - 207; Metazoa - 3152; Fungi - 1154; Plants - 664; Viruses - 16; Other Eukaryotes - 3854 (source: NCBI BLink). protein_coding AT3G12385 AT3G12385.1 pre-tRNA; tRNA-Lys (anticodon: TTT) pre_trna AT3G12587 AT3G12587.1 Oligosaccaryltransferase; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: endomembrane system; CONTAINS InterPro DOMAIN/s: Oligosaccaryltransferase (InterPro:IPR018943); BEST Arabidopsis thaliana protein match is: Oligosaccaryltransferase (TAIR:AT5G02502.1); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink). protein_coding AT3G11800 AT3G11800.1 unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: endomembrane system; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 15 growth stages; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT3G44150.1); Has 74 Blast hits to 73 proteins in 18 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 72; Viruses - 0; Other Eukaryotes - 2 (source: NCBI BLink). protein_coding AT3G11850 AT3G11850.1 Protein of unknown function, DUF593; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF593 (InterPro:IPR007656); BEST Arabidopsis thaliana protein match is: Protein of unknown function, DUF593 (TAIR:AT5G06560.1); Has 665 Blast hits to 623 proteins in 106 species: Archae - 4; Bacteria - 38; Metazoa - 138; Fungi - 31; Plants - 334; Viruses - 0; Other Eukaryotes - 120 (source: NCBI BLink). protein_coding AT3G12370 AT3G12370.1 Ribosomal protein L10 family protein; FUNCTIONS IN: structural constituent of ribosome; INVOLVED IN: translation, ribosome biogenesis; LOCATED IN: ribosome, intracellular; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Ribosomal protein L10 (InterPro:IPR001790); BEST Arabidopsis thaliana protein match is: Ribosomal protein L10 family protein (TAIR:AT5G13510.1); Has 4523 Blast hits to 4523 proteins in 1609 species: Archae - 0; Bacteria - 3322; Metazoa - 0; Fungi - 0; Plants - 74; Viruses - 0; Other Eukaryotes - 1127 (source: NCBI BLink). protein_coding AT3G11990 AT3G11990.1 FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: endomembrane system; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF784, Arabidopsis thaliana (InterPro:IPR008502); BEST Arabidopsis thaliana protein match is: downregulated in DIF1 18 (TAIR:AT1G45190.1); Has 78 Blast hits to 78 proteins in 4 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 78; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). protein_coding AT3G12685 AT3G12685.1 Acid phosphatase/vanadium-dependent haloperoxidase-related protein; CONTAINS InterPro DOMAIN/s: Acid phosphatase/vanadium-dependent haloperoxidase related (InterPro:IPR003832); BEST Arabidopsis thaliana protein match is: Acid phosphatase/vanadium-dependent haloperoxidase-related protein (TAIR:AT1G24350.1); Has 1099 Blast hits to 1099 proteins in 402 species: Archae - 0; Bacteria - 719; Metazoa - 0; Fungi - 0; Plants - 229; Viruses - 0; Other Eukaryotes - 151 (source: NCBI BLink). protein_coding AT3G12880 AT3G12880.1 Plant invertase/pectin methylesterase inhibitor superfamily protein; FUNCTIONS IN: enzyme inhibitor activity, pectinesterase inhibitor activity, pectinesterase activity; INVOLVED IN: biological_process unknown; LOCATED IN: endomembrane system; CONTAINS InterPro DOMAIN/s: Pectinesterase inhibitor (InterPro:IPR006501); BEST Arabidopsis thaliana protein match is: Plant invertase/pectin methylesterase inhibitor superfamily protein (TAIR:AT1G56100.2); Has 50 Blast hits to 50 proteins in 10 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 50; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). protein_coding AT3G12320 AT3G12320.1 unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT5G06980.4); Has 102 Blast hits to 102 proteins in 16 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 98; Viruses - 0; Other Eukaryotes - 4 (source: NCBI BLink). protein_coding AT3G12460 AT3G12460.1 Polynucleotidyl transferase, ribonuclease H-like superfamily protein; FUNCTIONS IN: 3'-5' exonuclease activity, nucleic acid binding; INVOLVED IN: nucleobase, nucleoside, nucleotide and nucleic acid metabolic process; LOCATED IN: intracellular; EXPRESSED IN: 10 plant structures; EXPRESSED DURING: 4 anthesis, F mature embryo stage, petal differentiation and expansion stage, E expanded cotyledon stage, D bilateral stage; CONTAINS InterPro DOMAIN/s: Polynucleotidyl transferase, ribonuclease H fold (InterPro:IPR012337), 3'-5' exonuclease (InterPro:IPR002562); BEST Arabidopsis thaliana protein match is: Polynucleotidyl transferase, ribonuclease H-like superfamily protein (TAIR:AT3G12430.1); Has 254 Blast hits to 240 proteins in 37 species: Archae - 0; Bacteria - 2; Metazoa - 43; Fungi - 4; Plants - 202; Viruses - 0; Other Eukaryotes - 3 (source: NCBI BLink). protein_coding AT3G12650 AT3G12650.1 unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: mitochondrion; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 15 growth stages; Has 31 Blast hits to 31 proteins in 12 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 31; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). protein_coding AT3G12430 AT3G12430.1 Polynucleotidyl transferase, ribonuclease H-like superfamily protein; FUNCTIONS IN: 3'-5' exonuclease activity, nucleic acid binding; INVOLVED IN: nucleobase, nucleoside, nucleotide and nucleic acid metabolic process; LOCATED IN: intracellular; CONTAINS InterPro DOMAIN/s: Polynucleotidyl transferase, ribonuclease H fold (InterPro:IPR012337), 3'-5' exonuclease (InterPro:IPR002562); BEST Arabidopsis thaliana protein match is: Polynucleotidyl transferase, ribonuclease H-like superfamily protein (TAIR:AT3G12460.1); Has 196 Blast hits to 186 proteins in 19 species: Archae - 0; Bacteria - 2; Metazoa - 15; Fungi - 0; Plants - 179; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). protein_coding AT3G12170 AT3G12170.1 Chaperone DnaJ-domain superfamily protein; FUNCTIONS IN: unfolded protein binding, heat shock protein binding; INVOLVED IN: protein folding; LOCATED IN: cellular_component unknown; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Molecular chaperone, heat shock protein, Hsp40, DnaJ (InterPro:IPR015609), Heat shock protein DnaJ, N-terminal (InterPro:IPR001623), Heat shock protein DnaJ (InterPro:IPR003095); BEST Arabidopsis thaliana protein match is: J-domain protein 6 (TAIR:AT5G06910.1); Has 23895 Blast hits to 23888 proteins in 3317 species: Archae - 171; Bacteria - 9423; Metazoa - 4258; Fungi - 2263; Plants - 2420; Viruses - 67; Other Eukaryotes - 5293 (source: NCBI BLink). protein_coding AT3G11740 AT3G11740.1 Protein of unknown function (DUF567); CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF567 (InterPro:IPR007612); BEST Arabidopsis thaliana protein match is: Protein of unknown function (DUF567) (TAIR:AT5G01750.2); Has 438 Blast hits to 438 proteins in 42 species: Archae - 0; Bacteria - 23; Metazoa - 0; Fungi - 25; Plants - 390; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). protein_coding AT3G11964 AT3G11964.1 RNA binding;RNA binding; FUNCTIONS IN: RNA binding; INVOLVED IN: mRNA processing, RNA processing; LOCATED IN: nucleolus, plasma membrane; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Nucleic acid-binding, OB-fold (InterPro:IPR012340), Nucleic acid-binding, OB-fold-like (InterPro:IPR016027), Ribosomal protein S1, RNA-binding domain (InterPro:IPR003029), RNA-processing protein, HAT helix (InterPro:IPR003107), Suppressor of forked (InterPro:IPR008847); BEST Arabidopsis thaliana protein match is: Tetratricopeptide repeat (TPR)-like superfamily protein (TAIR:AT3G51110.1); Has 43836 Blast hits to 19683 proteins in 2824 species: Archae - 141; Bacteria - 33398; Metazoa - 1103; Fungi - 905; Plants - 756; Viruses - 0; Other Eukaryotes - 7533 (source: NCBI BLink). protein_coding AT3G12910 AT3G12910.1 NAC (No Apical Meristem) domain transcriptional regulator superfamily protein; CONTAINS InterPro DOMAIN/s: No apical meristem (NAM) protein (InterPro:IPR003441); BEST Arabidopsis thaliana protein match is: NAC domain containing protein 42 (TAIR:AT2G43000.1); Has 2920 Blast hits to 2915 proteins in 75 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 2920; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). protein_coding AT3G12180 AT3G12180.1 Cornichon family protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: intracellular signaling pathway; LOCATED IN: endomembrane system, membrane; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Cornichon (InterPro:IPR003377); BEST Arabidopsis thaliana protein match is: Cornichon family protein (TAIR:AT1G12390.1); Has 605 Blast hits to 605 proteins in 175 species: Archae - 0; Bacteria - 0; Metazoa - 316; Fungi - 159; Plants - 93; Viruses - 0; Other Eukaryotes - 37 (source: NCBI BLink). protein_coding AT3G12210 AT3G12210.2 DNA binding; FUNCTIONS IN: DNA binding; INVOLVED IN: DNA repair; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Helix-hairpin-helix DNA-binding motif, class 1 (InterPro:IPR003583); Has 226 Blast hits to 226 proteins in 103 species: Archae - 3; Bacteria - 2; Metazoa - 90; Fungi - 78; Plants - 41; Viruses - 0; Other Eukaryotes - 12 (source: NCBI BLink). protein_coding AT3G11860 AT3G11860.1 BEST Arabidopsis thaliana protein match is: Sterile alpha motif (SAM) domain-containing protein (TAIR:AT3G11890.2); Has 52 Blast hits to 14 proteins in 3 species: Archae - 0; Bacteria - 1; Metazoa - 0; Fungi - 0; Plants - 51; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). protein_coding AT3G12390 AT3G12390.1 Nascent polypeptide-associated complex (NAC), alpha subunit family protein; INVOLVED IN: response to salt stress; LOCATED IN: cytosolic ribosome; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Ubiquitin-associated/translation elongation factor EF1B, N-terminal (InterPro:IPR000449), Nascent polypeptide-associated complex, alpha subunit (InterPro:IPR016641), Nascent polypeptide-associated complex NAC (InterPro:IPR002715); BEST Arabidopsis thaliana protein match is: nascent polypeptide-associated complex subunit alpha-like protein 3 (TAIR:AT5G13850.1); Has 5275 Blast hits to 2514 proteins in 367 species: Archae - 69; Bacteria - 684; Metazoa - 1880; Fungi - 785; Plants - 552; Viruses - 60; Other Eukaryotes - 1245 (source: NCBI BLink). protein_coding AT3G12000 AT3G12000.1 S-locus related protein SLR1, putative (S1); FUNCTIONS IN: sugar binding; INVOLVED IN: recognition of pollen; LOCATED IN: endomembrane system; EXPRESSED IN: 8 plant structures; EXPRESSED DURING: 4 anthesis, C globular stage, petal differentiation and expansion stage; CONTAINS InterPro DOMAIN/s: Curculin-like (mannose-binding) lectin (InterPro:IPR001480), PAN-2 domain (InterPro:IPR013227), Apple-like (InterPro:IPR003609), S-locus glycoprotein (InterPro:IPR000858); BEST Arabidopsis thaliana protein match is: receptor kinase 3 (TAIR:AT4G21380.1); Has 3015 Blast hits to 2919 proteins in 82 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 3014; Viruses - 0; Other Eukaryotes - 1 (source: NCBI BLink). protein_coding AT3G12870 AT3G12870.1 unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT5G56120.1); Has 70 Blast hits to 70 proteins in 12 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 70; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). protein_coding AT3G12710 AT3G12710.1 DNA glycosylase superfamily protein; FUNCTIONS IN: DNA-3-methyladenine glycosylase I activity, catalytic activity; INVOLVED IN: DNA repair, base-excision repair; EXPRESSED IN: 20 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: DNA glycosylase (InterPro:IPR011257), Methyladenine glycosylase (InterPro:IPR005019); BEST Arabidopsis thaliana protein match is: DNA glycosylase superfamily protein (TAIR:AT5G44680.1); Has 3673 Blast hits to 3673 proteins in 1573 species: Archae - 10; Bacteria - 3171; Metazoa - 4; Fungi - 0; Plants - 166; Viruses - 0; Other Eukaryotes - 322 (source: NCBI BLink). protein_coding AT3G12640 AT3G12640.1 RNA binding (RRM/RBD/RNP motifs) family protein; FUNCTIONS IN: RNA binding, nucleotide binding, nucleic acid binding; INVOLVED IN: mRNA processing; LOCATED IN: cellular_component unknown; EXPRESSED IN: 25 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: RNA recognition motif, RNP-1 (InterPro:IPR000504), Nucleotide-binding, alpha-beta plait (InterPro:IPR012677), Splicing factor PWI (InterPro:IPR002483); BEST Arabidopsis thaliana protein match is: RNA binding (RRM/RBD/RNP motifs) family protein (TAIR:AT2G24350.1); Has 3110 Blast hits to 3077 proteins in 726 species: Archae - 48; Bacteria - 800; Metazoa - 1243; Fungi - 266; Plants - 328; Viruses - 0; Other Eukaryotes - 425 (source: NCBI BLink). protein_coding AT3G12760 AT3G12760.1 CONTAINS InterPro DOMAIN/s: Defective-in-cullin neddylation protein (InterPro:IPR014764), Protein of unknown function DUF298 (InterPro:IPR005176), UBA-like (InterPro:IPR009060); BEST Arabidopsis thaliana protein match is: Domain of unknown function (DUF298) (TAIR:AT1G15860.2); Has 857 Blast hits to 855 proteins in 202 species: Archae - 0; Bacteria - 0; Metazoa - 482; Fungi - 154; Plants - 139; Viruses - 0; Other Eukaryotes - 82 (source: NCBI BLink). protein_coding AT3G12030 AT3G12030.1 FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: endomembrane system; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF106, transmembrane (InterPro:IPR002809), Uncharacterised conserved protein UCP023322, transmembrane eukaryotic (InterPro:IPR008559); BEST Arabidopsis thaliana protein match is: Protein of unknown function DUF106, transmembrane (TAIR:AT5G06660.1); Has 261 Blast hits to 261 proteins in 116 species: Archae - 0; Bacteria - 0; Metazoa - 153; Fungi - 0; Plants - 54; Viruses - 0; Other Eukaryotes - 54 (source: NCBI BLink). protein_coding AT3G11770 AT3G11770.1 Polynucleotidyl transferase, ribonuclease H-like superfamily protein; FUNCTIONS IN: 3'-5' exonuclease activity, nucleic acid binding; INVOLVED IN: nucleobase, nucleoside, nucleotide and nucleic acid metabolic process; LOCATED IN: plasma membrane, vacuole; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Polynucleotidyl transferase, ribonuclease H fold (InterPro:IPR012337), 3'-5' exonuclease (InterPro:IPR002562); BEST Arabidopsis thaliana protein match is: Polynucleotidyl transferase, ribonuclease H-like superfamily protein (TAIR:AT5G06450.1); Has 128 Blast hits to 128 proteins in 25 species: Archae - 0; Bacteria - 0; Metazoa - 45; Fungi - 0; Plants - 81; Viruses - 0; Other Eukaryotes - 2 (source: NCBI BLink). protein_coding AT3G12410 AT3G12410.1 Polynucleotidyl transferase, ribonuclease H-like superfamily protein; FUNCTIONS IN: 3'-5' exonuclease activity, nucleic acid binding; INVOLVED IN: nucleobase, nucleoside, nucleotide and nucleic acid metabolic process; LOCATED IN: intracellular; CONTAINS InterPro DOMAIN/s: Polynucleotidyl transferase, ribonuclease H fold (InterPro:IPR012337), 3'-5' exonuclease (InterPro:IPR002562); BEST Arabidopsis thaliana protein match is: Polynucleotidyl transferase, ribonuclease H-like superfamily protein (TAIR:AT3G12460.1); Has 208 Blast hits to 196 proteins in 21 species: Archae - 0; Bacteria - 0; Metazoa - 5; Fungi - 2; Plants - 197; Viruses - 0; Other Eukaryotes - 4 (source: NCBI BLink). protein_coding AT3G11890 AT3G11890.2 Sterile alpha motif (SAM) domain-containing protein; CONTAINS InterPro DOMAIN/s: Sterile alpha motif (InterPro:IPR001660), Sterile alpha motif homology (InterPro:IPR010993), Sterile alpha motif, type 2 (InterPro:IPR011510); BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT3G11860.1); Has 35333 Blast hits to 34131 proteins in 2444 species: Archae - 798; Bacteria - 22429; Metazoa - 974; Fungi - 991; Plants - 531; Viruses - 0; Other Eukaryotes - 9610 (source: NCBI BLink). protein_coding AT3G12730 AT3G12730.1 Homeodomain-like superfamily protein; FUNCTIONS IN: sequence-specific DNA binding transcription factor activity; INVOLVED IN: regulation of transcription; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Homeodomain-like (InterPro:IPR009057), Myb, DNA-binding (InterPro:IPR014778), Myb-like DNA-binding domain, SHAQKYF class (InterPro:IPR006447), HTH transcriptional regulator, Myb-type, DNA-binding (InterPro:IPR017930), Homeodomain-related (InterPro:IPR012287); BEST Arabidopsis thaliana protein match is: Homeodomain-like superfamily protein (TAIR:AT1G79430.2); Has 1659 Blast hits to 1654 proteins in 62 species: Archae - 0; Bacteria - 0; Metazoa - 1; Fungi - 0; Plants - 1640; Viruses - 0; Other Eukaryotes - 18 (source: NCBI BLink). protein_coding AT3G12300 AT3G12300.1 unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: endomembrane system; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF667 (InterPro:IPR007714); Has 373 Blast hits to 371 proteins in 116 species: Archae - 0; Bacteria - 0; Metazoa - 213; Fungi - 4; Plants - 71; Viruses - 0; Other Eukaryotes - 85 (source: NCBI BLink). protein_coding (BUG22) (ATBUG22); (BUG22) AT3G12400 AT3G12400.1 Mutants of this gene were initially identified because of the trichome morphogenesis phenotype. Those trichomes have multiple nuclei, a defect that turns out not to be restricted to the trichomes but also in all endoreduplicating cell types. This gene encodes a ubiquitin-binding protein with sequence similarities with yeast proteins that are components of the ESCRTI-III complexes. The Arabidopsis protein is found associated with the endosome. protein_coding (ELC) (ELC); (ATELC) AT3G11750 AT3G11750.1 Encodes an enzyme that can act as a aldolase or an epimerase for 7,8-dihydroneopterin and 7,8-dihydromonapterin in vitro. It is likely to act in tetrahydrofolate biosynthesis in vivo. protein_coding (FOLB1) (FOLB1) AT3G12570 AT3G12570.1 FYD; LOCATED IN: chloroplast envelope; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 15 growth stages; BEST Arabidopsis thaliana protein match is: HSP20-like chaperones superfamily protein (TAIR:AT2G37570.1); Has 108 Blast hits to 106 proteins in 15 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 108; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). protein_coding (FYD) (FYD) AT3G12530 AT3G12530.1 PSF2; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: DNA replication; LOCATED IN: nucleus; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: GINS complex (InterPro:IPR021151), GINS complex, subunit Psf2 (InterPro:IPR007257), GINS complex, subunit Psf2, subgroup (InterPro:IPR016906); Has 396 Blast hits to 382 proteins in 194 species: Archae - 0; Bacteria - 0; Metazoa - 128; Fungi - 167; Plants - 52; Viruses - 0; Other Eukaryotes - 49 (source: NCBI BLink). protein_coding (PSF2) (PSF2) AT3G12480 AT3G12480.1 "nuclear factor Y, subunit C11" (NF-YC11); FUNCTIONS IN: DNA binding, sequence-specific DNA binding transcription factor activity; INVOLVED IN: regulation of transcription, DNA-dependent; LOCATED IN: nucleus, intracellular; EXPRESSED IN: 25 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Transcription factor CBF/NF-Y/archaeal histone (InterPro:IPR003958), Histone-fold (InterPro:IPR009072); BEST Arabidopsis thaliana protein match is: Histone superfamily protein (TAIR:AT5G19490.1); Has 1099 Blast hits to 1099 proteins in 222 species: Archae - 0; Bacteria - 6; Metazoa - 308; Fungi - 314; Plants - 371; Viruses - 0; Other Eukaryotes - 100 (source: NCBI BLink). protein_coding "NUCLEAR FACTOR Y, SUBUNIT C11" (NF-YC11) "NUCLEAR FACTOR Y, SUBUNIT C11" (NF-YC11) AT3G12110 AT3G12110.1 Encodes an actin that is expressed predominantly during reproductive development. protein_coding ACTIN-11 (ACT11) ACTIN-11 (ACT11) AT3G12380 AT3G12380.2 Encodes a gene similar to actin-related proteins in other organisms. Member of nuclear ARP gene family. protein_coding ACTIN-RELATED PROTEIN 5 (ARP5) ACTIN-RELATED PROTEIN 5 (ARP5) AT3G12890 AT3G12890.1 Encodes a protein belonging to a class of CCT (CONSTANS, CONSTANS-like, TOC1) domain proteins. The protein contains a 43 amino acid-long sequence with high homology to the CCT domain but does not have any B-box or GATA-type zinc finger domains. Functions as a transcriptional activator and regulates the expression of at least a subset of sugar-inducible genes. protein_coding ACTIVATOR OF SPOMIN::LUC2 (ASML2) ACTIVATOR OF SPOMIN::LUC2 (ASML2) AT3G12690 AT3G12690.1 Encodes a putative serine/threonine kinase It is expressed specifically in pollen and appears to function redundantly with AGC1.7 to regulate polarized growth of pollen tubes. protein_coding AGC KINASE 1.5 (AGC1.5) AGC KINASE 1.5 (AGC1.5) AT3G12740 AT3G12740.1 Physically interacts with ALA3, and is required for the phospholipid translocase activity of ALA3. protein_coding ALA-INTERACTING SUBUNIT 1 (ALIS1) ALA-INTERACTING SUBUNIT 1 (ALIS1) AT3G11900 AT3G11900.1 encodes an amino acid transporter that transports aromatic and neutral amino acids, IAA, and 2,4-D. Expressed in all tissues with highest abundance in flowers and cauline leaves. a member of a small gene family in Arabidopsis and represents a new class of amino acid transporters. protein_coding AROMATIC AND NEUTRAL TRANSPORTER 1 (ANT1) AROMATIC AND NEUTRAL TRANSPORTER 1 (ANT1) AT3G12500 AT3G12500.1 encodes a basic chitinase involved in ethylene/jasmonic acid mediated signalling pathway during systemic acquired resistance based on expression analyses. protein_coding BASIC CHITINASE (HCHIB) (CHI-B);BASIC CHITINASE (HCHIB); (B-CHI);PATHOGENESIS-RELATED 3 (PR-3);PATHOGENESIS-RELATED 3 (PR3);BASIC CHITINASE (ATHCHIB) AT3G12012 AT3G12012.1 Upstream open reading frames (uORFs) are small open reading frames found in the 5' UTR of a mature mRNA, and can potentially mediate translational regulation of the largest, or major, ORF (mORF). CPuORF20 represents a conserved upstream opening reading frame relative to major ORF AT3G12010.1 protein_coding CONSERVED PEPTIDE UPSTREAM OPEN READING FRAME 20 (CPuORF20) CONSERVED PEPTIDE UPSTREAM OPEN READING FRAME 20 (CPuORF20) AT3G12490 AT3G12490.2 Encodes a protein with cysteine proteinase inhibitor activity. Overexpression increases tolerance to abiotic stressors (i.e.salt,osmitic, cold stress). protein_coding CYSTATIN B (CYSB) CYSTATIN B (ATCYSB);ARABIDOPSIS THALIANA PHYTOCYSTATIN 6 (ATCYS6);CYSTATIN B (CYSB) AT3G12610 AT3G12610.1 Plays role in DNA-damage repair/toleration. Partially complements RecA- phenotypes. protein_coding DNA-DAMAGE REPAIR/TOLERATION 100 (DRT100) DNA-DAMAGE REPAIR/TOLERATION 100 (DRT100) AT3G12080 AT3G12080.1 embryo defective 2738 (emb2738); FUNCTIONS IN: GTP binding; INVOLVED IN: embryo development ending in seed dormancy; LOCATED IN: chloroplast; EXPRESSED IN: 21 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: GTP-binding, EngA (InterPro:IPR016484), Small GTP-binding protein (InterPro:IPR005225), GTP1/OBG (InterPro:IPR006073), GTP-binding protein, HSR1-related (InterPro:IPR002917); BEST Arabidopsis thaliana protein match is: GTP binding;GTP binding (TAIR:AT5G39960.1); Has 46668 Blast hits to 25884 proteins in 2974 species: Archae - 250; Bacteria - 36183; Metazoa - 387; Fungi - 453; Plants - 421; Viruses - 0; Other Eukaryotes - 8974 (source: NCBI BLink). protein_coding EMBRYO DEFECTIVE 2738 (emb2738) EMBRYO DEFECTIVE 2738 (emb2738) AT3G12670 AT3G12670.1 embryo defective 2742 (emb2742); FUNCTIONS IN: CTP synthase activity, catalytic activity; INVOLVED IN: response to cadmium ion, embryo development ending in seed dormancy; LOCATED IN: endomembrane system; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Glutamine amidotransferase class-I, C-terminal (InterPro:IPR000991), CTP synthase (InterPro:IPR004468), CTP synthase, N-terminal (InterPro:IPR017456), Glutamine amidotransferase type 1 (InterPro:IPR017926); BEST Arabidopsis thaliana protein match is: CTP synthase family protein (TAIR:AT1G30820.1); Has 10841 Blast hits to 10805 proteins in 2914 species: Archae - 237; Bacteria - 5484; Metazoa - 258; Fungi - 230; Plants - 171; Viruses - 0; Other Eukaryotes - 4461 (source: NCBI BLink). protein_coding EMBRYO DEFECTIVE 2742 (emb2742) EMBRYO DEFECTIVE 2742 (emb2742) AT3G12140 AT3G12140.3 Emsy N Terminus (ENT)/ plant Tudor-like domains-containing protein; CONTAINS InterPro DOMAIN/s: ENT (InterPro:IPR005491), Tudor-like, plant (InterPro:IPR014002); BEST Arabidopsis thaliana protein match is: Emsy N Terminus (ENT)/ plant Tudor-like domains-containing protein (TAIR:AT5G06780.1); Has 35333 Blast hits to 34131 proteins in 2444 species: Archae - 798; Bacteria - 22429; Metazoa - 974; Fungi - 991; Plants - 531; Viruses - 0; Other Eukaryotes - 9610 (source: NCBI BLink). protein_coding EMSY-LIKE 1 (EML1) (AtEML1);EMSY-LIKE 1 (EML1) AT3G12680 AT3G12680.1 Member of the floral homeotic AGAMOUS pathway. protein_coding ENHANCER OF AG-4 1 (HUA1) ENHANCER OF AG-4 1 (HUA1) AT3G12550 AT3G12550.1 Belongs to a subgroup of SGS3-like proteins that act redundantly in RNA-directed DNA methylation: AT1G15910 (FDM1), AT4G00380 (FDM2), AT3G12550 (FDM3), AT1G13790 (FDM4), AT1G80790 (FDM5). protein_coding FACTOR OF DNA METHYLATION 3 (FDM3) FACTOR OF DNA METHYLATION 3 (FDM3) AT3G12660 AT3G12660.1 fasciclin-like arabinogalactan-protein, family (FLA14) protein_coding FASCICLIN-LIKE ARABINOGALACTAN PROTEIN 14 PRECURSOR (FLA14) FASCICLIN-LIKE ARABINOGALACTAN PROTEIN 14 PRECURSOR (FLA14) AT3G12120 AT3G12120.1 Major enzyme responsible for the synthesis of 18:2 fatty acids in the endoplasmic reticulum. Contains His-rich motifs, which contribute to the interaction with the electron donor cytochrome b5. Mutations in this gene suppress the low temperature-induced phenotype of Arabidopsis tocopherol-deficient mutant vte2. protein_coding FATTY ACID DESATURASE 2 (FAD2) FATTY ACID DESATURASE 2 (FAD2) AT3G12145 AT3G12145.1 A novel leucine-rich repeat protein. Interacts directly with MADS domain transcription factor. protein_coding FLOR1 (FLR1) (FLOR1);FLOR1 (FLR1);FLORAL TRANSITION AT THE MERISTEM4 (FTM4) AT3G12580 AT3G12580.1 heat shock protein 70 (HSP70); FUNCTIONS IN: ATP binding; INVOLVED IN: in 9 processes; LOCATED IN: cytosol, mitochondrion, cell wall, plasma membrane; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 11 growth stages; CONTAINS InterPro DOMAIN/s: Heat shock protein 70, conserved site (InterPro:IPR018181), Heat shock protein Hsp70 (InterPro:IPR001023), Heat shock protein 70 (InterPro:IPR013126); BEST Arabidopsis thaliana protein match is: heat shock cognate protein 70-1 (TAIR:AT5G02500.1); Has 34126 Blast hits to 33731 proteins in 4830 species: Archae - 159; Bacteria - 16481; Metazoa - 3906; Fungi - 1752; Plants - 1258; Viruses - 310; Other Eukaryotes - 10260 (source: NCBI BLink). protein_coding HEAT SHOCK PROTEIN 70 (HSP70) ARABIDOPSIS HEAT SHOCK PROTEIN 70 (ATHSP70);HEAT SHOCK PROTEIN 70 (HSP70) AT3G11945 AT3G11945.2 Encodes a protein involved in plastoquinone-9 biosynthesis. The enzyme possesses homogentisate prenyltransferase activity and was shown to use solanesyl diphosphate, farnesyl diphosphate and geranylgeranyldiphosphate as prenyl donors, but not phytyldiphosphate. This gene At3g11945 derives from a split of At3g11950, publications Tian et al (2007) and Sadre et al (2006) refer to this gene as At3g11950. protein_coding HOMOGENTISATE PRENYLTRANSFERASE (HST) HOMOGENTISATE PRENYLTRANSFERASE (ATHST);HOMOGENTISATE PRENYLTRANSFERASE (HST);PHYTOENE DESATURATION 2 (PDS2) AT3G12360 AT3G12360.1 Encodes a protein with an ankyrin motif and transmembrane domains that is involved in salt tolerance. Expressed throughout the plant and localized to the plasma membrane. Loss of function mutations show an increased tolerance to salt based on assaying seedling growth in the presence of salt. In the mutants, induction of genes required for production of reactive oxygen species is reduced suggesting that itn1 promotes ROS production. It interacts with RCN1 in vivo and may regulate its subcellular localization. protein_coding INCREASED TOLERANCE TO NACL (ITN1) INCREASED TOLERANCE TO NACL (ITN1) AT3G11980 AT3G11980.1 Similar to fatty acid reductases. protein_coding MALE STERILITY 2 (MS2) FATTY ACID REDUCTASE 2 (FAR2);MALE STERILITY 2 (MS2) AT3G12770 AT3G12770.1 Encodes a pentatricopeptide repeat protein (PPR) protein involved in mitochondrial mRNA editing. protein_coding MITOCHONDRIAL EDITING FACTOR 22 (MEF22) MITOCHONDRIAL EDITING FACTOR 22 (MEF22) AT3G12820 AT3G12820.1 Member of the R2R3 factor gene family. protein_coding MYB DOMAIN PROTEIN 10 (MYB10) MYB DOMAIN PROTEIN 10 (MYB10);MYB DOMAIN PROTEIN 10 (AtMYB10) AT3G12720 AT3G12720.1 Member of the R2R3 factor gene family. protein_coding MYB DOMAIN PROTEIN 67 (MYB67) MYB DOMAIN PROTEIN 67 (ATMYB67); (ATY53);MYB DOMAIN PROTEIN 67 (MYB67); (MYB67) AT3G12200 AT3G12200.2 Encodes AtNek7, a member of the NIMA-related serine/threonine kinases (Neks) that have been linked to cell-cycle regulation in fungi and mammals. Plant Neks might be involved in plant development processes. protein_coding NIMA-RELATED KINASE 7 (Nek7) NIMA-RELATED KINASE 7 (Nek7) AT3G12600 AT3G12600.1 nudix hydrolase homolog 16 (NUDT16); FUNCTIONS IN: hydrolase activity; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: NUDIX hydrolase domain-like (InterPro:IPR015797), NUDIX hydrolase, conserved site (InterPro:IPR020084), NUDIX hydrolase domain (InterPro:IPR000086); BEST Arabidopsis thaliana protein match is: nudix hydrolase homolog 12 (TAIR:AT1G12880.1); Has 1169 Blast hits to 1168 proteins in 345 species: Archae - 0; Bacteria - 470; Metazoa - 236; Fungi - 123; Plants - 235; Viruses - 0; Other Eukaryotes - 105 (source: NCBI BLink). protein_coding NUDIX HYDROLASE HOMOLOG 16 (NUDT16) NUDIX HYDROLASE HOMOLOG 16 (NUDT16);NUDIX HYDROLASE HOMOLOG 16 (atnudt16) AT3G12780 AT3G12780.1 nuclear phosphoglycerate kinase (PGK1) protein_coding PHOSPHOGLYCERATE KINASE 1 (PGK1) PHOSPHOGLYCERATE KINASE 1 (PGK1) AT3G12810 AT3G12810.1 Encodes a protein similar to ATP-dependent, chromatin-remodeling proteins of the ISWI and SWI2/SNF2 family. Genetic analyses suggest that this gene is involved in multiple flowering pathways. Mutations in PIE1 results in suppression of FLC-mediated delay of flowering and causes early flowering in noninductive photoperiods independently of FLC. PIE1 is required for expression of FLC in the shoot apex but not in the root.Along with ARP6 forms a complex to deposit modified histone H2A.Z at several loci within the genome. This modification alters the expression of the target genes (i.e. FLC, MAF4, MAF6). protein_coding PHOTOPERIOD-INDEPENDENT EARLY FLOWERING 1 (PIE1) PHOTOPERIOD-INDEPENDENT EARLY FLOWERING 1 (PIE1); (chr13); (SRCAP) AT3G11840 AT3G11840.1 Encodes a U-box-domain-containing E3 ubiquitin ligase that acts as a negative regulator of PAMP-triggered immunity. protein_coding PLANT U-BOX 24 (PUB24) PLANT U-BOX 24 (PUB24) AT3G12270 AT3G12270.1 protein arginine methyltransferase 3 (PRMT3); FUNCTIONS IN: protein methyltransferase activity, methyltransferase activity, zinc ion binding; INVOLVED IN: protein amino acid methylation; LOCATED IN: intracellular, cytoplasm; EXPRESSED IN: 21 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Zinc finger, C2H2-like (InterPro:IPR015880), Ribosomal L11 methyltransferase, PrmA (InterPro:IPR010456), Zinc finger, C2H2-type (InterPro:IPR007087); BEST Arabidopsis thaliana protein match is: protein arginine methyltransferase 6 (TAIR:AT3G20020.1); Has 3110 Blast hits to 3077 proteins in 726 species: Archae - 48; Bacteria - 800; Metazoa - 1243; Fungi - 266; Plants - 328; Viruses - 0; Other Eukaryotes - 425 (source: NCBI BLink). protein_coding PROTEIN ARGININE METHYLTRANSFERASE 3 (PRMT3) ARABIDOPSIS THALIANA PROTEIN ARGININE METHYLTRANSFERASE 3 (ATPRMT3);PROTEIN ARGININE METHYLTRANSFERASE 3 (PRMT3) AT3G12070 AT3G12070.1 RAB geranylgeranyl transferase beta subunit 2 (RGTB2); FUNCTIONS IN: catalytic activity; EXPRESSED IN: 13 plant structures; EXPRESSED DURING: 6 growth stages; CONTAINS InterPro DOMAIN/s: Terpenoid cylases/protein prenyltransferase alpha-alpha toroid (InterPro:IPR008930), Prenyltransferase/squalene oxidase (InterPro:IPR001330); BEST Arabidopsis thaliana protein match is: RAB geranylgeranyl transferase beta subunit 1 (TAIR:AT5G12210.1); Has 1529 Blast hits to 1352 proteins in 256 species: Archae - 0; Bacteria - 31; Metazoa - 548; Fungi - 456; Plants - 198; Viruses - 0; Other Eukaryotes - 296 (source: NCBI BLink). protein_coding RAB GERANYLGERANYL TRANSFERASE BETA SUBUNIT 2 (RGTB2) RAB GERANYLGERANYL TRANSFERASE BETA SUBUNIT 2 (AtRGTB2);RAB GERANYLGERANYL TRANSFERASE BETA SUBUNIT 2 (RGTB2) AT3G12160 AT3G12160.1 Encodes RABA4D, a member of the Arabidopsis RabA4 subfamily of Rab GTPase proteins. It is transported in exocytic vesicles to the apical tip of pollen tubes where it appears to promote tip growth. Proper localization of RabA4d depends on ROP1, RIC3, and RIC4 activity. protein_coding RAB GTPASE HOMOLOG A4D (RABA4D) RAB GTPASE HOMOLOG A4D (RABA4D);ARABIDOPSIS THALIANA RAB GTPASE HOMOLOG A4D (ATRABA4D) AT3G12280 AT3G12280.1 Encodes a retinoblastoma homologue RETINOBLASTOMA-RELATED protein (RBR or RBR1). RBR controls nuclear proliferation in the female gametophyte. Also required for correct differentiation of male gametophytic cell types. Regulates stem cell maintenance in Arabidopsis roots. Involved in the determination of cell cycle arrest in G1 phase after sucrose starvation. RBR1 is also involved in regulation of imprinted genes. Together with MSI1 it represses the expression of MET1. This in turn activates expression of the imprinted genes FIS2 and FWA. protein_coding RETINOBLASTOMA-RELATED 1 (RBR1) RETINOBLASTOMA-RELATED 1 (RBR1);RETINOBLASTOMA-RELATED (RBR);RETINOBLASTOMA 1 (RB1);RETINOBLASTOMA-RELATED PROTEIN 1 (ATRBR1); (RB) AT3G11940 AT3G11940.1 One of two genes encoding the ribosomal protein S5. Mutants have semi-dominant developmental phenotypes. Most cell-division processes are delayed or disturbed in the heterozygous mutant, and development is completely arrested at an early embryonic stage in the homozygous mutant. protein_coding RIBOSOMAL PROTEIN 5A (RPS5A) RIBOSOMAL PROTEIN 5A (ATRPS5A);RIBOSOMAL PROTEIN 5A (RPS5A);ARABIDOPSIS MINUTE-LIKE 1 (AML1) AT3G12230 AT3G12230.1 serine carboxypeptidase-like 14 (scpl14); FUNCTIONS IN: serine-type carboxypeptidase activity; INVOLVED IN: proteolysis; LOCATED IN: endomembrane system; CONTAINS InterPro DOMAIN/s: Peptidase S10, serine carboxypeptidase (InterPro:IPR001563); BEST Arabidopsis thaliana protein match is: serine carboxypeptidase-like 15 (TAIR:AT3G12240.1); Has 3660 Blast hits to 3566 proteins in 378 species: Archae - 0; Bacteria - 216; Metazoa - 635; Fungi - 834; Plants - 1566; Viruses - 0; Other Eukaryotes - 409 (source: NCBI BLink). protein_coding SERINE CARBOXYPEPTIDASE-LIKE 14 (scpl14) SERINE CARBOXYPEPTIDASE-LIKE 14 (scpl14) AT3G12240 AT3G12240.1 serine carboxypeptidase-like 15 (SCPL15); FUNCTIONS IN: serine-type carboxypeptidase activity; INVOLVED IN: proteolysis; LOCATED IN: endomembrane system; CONTAINS InterPro DOMAIN/s: Peptidase S10, serine carboxypeptidase (InterPro:IPR001563); BEST Arabidopsis thaliana protein match is: serine carboxypeptidase-like 14 (TAIR:AT3G12230.1); Has 3798 Blast hits to 3708 proteins in 428 species: Archae - 0; Bacteria - 341; Metazoa - 625; Fungi - 840; Plants - 1569; Viruses - 0; Other Eukaryotes - 423 (source: NCBI BLink). protein_coding SERINE CARBOXYPEPTIDASE-LIKE 15 (SCPL15) SERINE CARBOXYPEPTIDASE-LIKE 15 (SCPL15) AT3G12220 AT3G12220.1 serine carboxypeptidase-like 16 (scpl16); FUNCTIONS IN: serine-type carboxypeptidase activity; INVOLVED IN: proteolysis; LOCATED IN: endomembrane system; CONTAINS InterPro DOMAIN/s: Peptidase S10, serine carboxypeptidase (InterPro:IPR001563); BEST Arabidopsis thaliana protein match is: serine carboxypeptidase-like 14 (TAIR:AT3G12230.1); Has 3960 Blast hits to 3875 proteins in 462 species: Archae - 0; Bacteria - 498; Metazoa - 629; Fungi - 839; Plants - 1565; Viruses - 0; Other Eukaryotes - 429 (source: NCBI BLink). protein_coding SERINE CARBOXYPEPTIDASE-LIKE 16 (scpl16) SERINE CARBOXYPEPTIDASE-LIKE 16 (scpl16) AT3G12203 AT3G12203.1 serine carboxypeptidase-like 17 (scpl17); FUNCTIONS IN: serine-type carboxypeptidase activity; INVOLVED IN: proteolysis; LOCATED IN: endomembrane system; CONTAINS InterPro DOMAIN/s: Peptidase S10, serine carboxypeptidase (InterPro:IPR001563); BEST Arabidopsis thaliana protein match is: serine carboxypeptidase-like 16 (TAIR:AT3G12220.1); Has 3617 Blast hits to 3541 proteins in 365 species: Archae - 0; Bacteria - 182; Metazoa - 630; Fungi - 840; Plants - 1564; Viruses - 0; Other Eukaryotes - 401 (source: NCBI BLink). protein_coding SERINE CARBOXYPEPTIDASE-LIKE 17 (scpl17) SERINE CARBOXYPEPTIDASE-LIKE 17 (scpl17) AT3G12800 AT3G12800.1 short-chain dehydrogenase-reductase B (SDRB); FUNCTIONS IN: oxidoreductase activity, binding, catalytic activity; INVOLVED IN: oxidation reduction, metabolic process; LOCATED IN: peroxisome, plasma membrane; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: NAD(P)-binding domain (InterPro:IPR016040), Glucose/ribitol dehydrogenase (InterPro:IPR002347), Short-chain dehydrogenase/reductase SDR (InterPro:IPR002198); BEST Arabidopsis thaliana protein match is: NAD(P)-binding Rossmann-fold superfamily protein (TAIR:AT2G07640.1); Has 108804 Blast hits to 108592 proteins in 3545 species: Archae - 967; Bacteria - 72835; Metazoa - 4412; Fungi - 5364; Plants - 2598; Viruses - 2; Other Eukaryotes - 22626 (source: NCBI BLink). protein_coding SHORT-CHAIN DEHYDROGENASE-REDUCTASE B (SDRB) (DECR);SHORT-CHAIN DEHYDROGENASE-REDUCTASE B (SDRB) AT3G12630 AT3G12630.1 Encodes a protein with E3 ligase activity that acts as a positive regulator of stress responses in Arabidopsis. protein_coding STRESS ASSOCIATED PROTEIN 5 (SAP5) STRESS ASSOCIATED PROTEIN 5 (SAP5) AT3G12520 AT3G12520.1 Encodes a sulfate transporter that in induced under sulfate limitation. protein_coding SULFATE TRANSPORTER 4;2 (SULTR4;2) SULFATE TRANSPORTER 4;2 (SULTR4;2) AT3G11820 AT3G11820.1 Encodes a syntaxin localized at the plasma membrane (SYR1, Syntaxin Related Protein 1, also known as SYP121, PENETRATION1/PEN1). SYR1/PEN1 is a member of the SNARE superfamily proteins. SNARE proteins are involved in cell signaling, vesicle traffic, growth and development. SYR1/PEN1 functions in positioning anchoring of the KAT1 K+ channel protein at the plasma membrane. Transcription is upregulated by abscisic acid, suggesting a role in ABA signaling. Also functions in non-host resistance against barley powdery mildew, Blumeria graminis sp. hordei. SYR1/PEN1 is a nonessential component of the preinvasive resistance against Colletotrichum fungus. Required for mlo resistance. The syp121 point mutation results in stomatal phenotypes that reduce CO2 assimilation, slow vegetative growth and increase water use efficiency in the whole plant, conditional upon high light intensities and low relative humidity. protein_coding SYNTAXIN OF PLANTS 121 (SYP121) SYNTAXIN RELATED PROTEIN 1 (SYR1);SYNTAXIN RELATED PROTEIN 1 (ATSYR1);PENETRATION1 (PEN1);SYNTAXIN OF PLANTS 121 (SYP121); (AT-SYR1); (ATSYP121) AT3G12090 AT3G12090.1 Member of TETRASPANIN family protein_coding TETRASPANIN6 (TET6) TETRASPANIN6 (TET6) AT3G12250 AT3G12250.4 basic leucine zipper transcription factor involved in the activation of SA-responsive genes. protein_coding TGACG MOTIF-BINDING FACTOR 6 (TGA6) (BZIP45);TGACG MOTIF-BINDING FACTOR 6 (TGA6) AT3G12560 AT3G12560.1 Encodes a telomeric DNA-binding protein. protein_coding TRF-LIKE 9 (TRFL9) TELOMERIC DNA-BINDING PROTEIN 2 (ATTBP2);TRF-LIKE 9 (TRFL9) AT3G12060 AT3G12060.1 Encodes a member of the TBL (TRICHOME BIREFRINGENCE-LIKE) gene family containing a plant-specific DUF231 (domain of unknown function) domain. TBL gene family has 46 members, two of which (TBR/AT5G06700 and TBL3/AT5G01360) have been shown to be involved in the synthesis and deposition of secondary wall cellulose, presumably by influencing the esterification state of pectic polymers. A nomenclature for this gene family has been proposed (Volker Bischoff & Wolf Scheible, 2010, personal communication). protein_coding TRICHOME BIREFRINGENCE-LIKE 1 (TBL1) TRICHOME BIREFRINGENCE-LIKE 1 (TBL1) AT3G11910 AT3G11910.1 ubiquitin-specific protease 13 (UBP13); FUNCTIONS IN: ubiquitin-specific protease activity, ubiquitin thiolesterase activity; INVOLVED IN: ubiquitin-dependent protein catabolic process; LOCATED IN: cellular_component unknown; EXPRESSED IN: 25 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: TRAF-like (InterPro:IPR008974), Peptidase C19, ubiquitin carboxyl-terminal hydrolase 2, conserved site (InterPro:IPR018200), MATH (InterPro:IPR002083), Peptidase C19, ubiquitin carboxyl-terminal hydrolase 2 (InterPro:IPR001394), TRAF-type (InterPro:IPR013322); BEST Arabidopsis thaliana protein match is: ubiquitin-specific protease 12 (TAIR:AT5G06600.1); Has 7915 Blast hits to 7124 proteins in 272 species: Archae - 0; Bacteria - 15; Metazoa - 3654; Fungi - 1255; Plants - 1604; Viruses - 7; Other Eukaryotes - 1380 (source: NCBI BLink). protein_coding UBIQUITIN-SPECIFIC PROTEASE 13 (UBP13) (AtUBP13);UBIQUITIN-SPECIFIC PROTEASE 13 (UBP13) AT3G12750 AT3G12750.1 A member of Zrt- and Irt-related protein (ZIP) family. transcript is induced in response to zinc deficiency in the root. protein_coding ZINC TRANSPORTER 1 PRECURSOR (ZIP1) ZINC TRANSPORTER 1 PRECURSOR (ZIP1)