This folder contains VCF files used in analyses in Bagley et al. AllSNPs.vcf is the raw vcf output from STACKS, with no further modifications. Final10percentMissingData.vcf is the VCF file for the final filtered dataset (10x coverage; one random SNP per locus; 10% or less missing data; heterozygote excess0 sites removed) used in population structuring and IBD/IBE analyses. Final50percentMissingData.vcf is the VCF file for the final filtered dataset (10x coverage; one random SNP per locus; 50% or less missing data; heterozygote excess sites removed) used in demographic analyses.