//Parameters for the coalescence simulation program : simcoal.exe 2 samples to simulate : //Population effective sizes (number of genes) NPOP0 NPOP1 //Samples sizes and samples age 10 10 //Growth rates: negative growth implies population expansion 0 0 //Number of migration matrices : 0 implies no migration between demes 2 //Migration matrix 0 0 0 M10M 0 //Migration matrix 1 0 0 0 0 //historical event: time, source, sink, migrants, new deme size, growth rate, migr mat index 2 historical event 31 0 0 0 1 0 1 1833 0 1 1 RESIZE 0 1 //Number of independent loci [chromosome] 1 //Per chromosome: Number of contiguous linkage Block: a block is a set of contiguous loci 1 //per Block:data type, number of loci, per generation recombination and mutation rates and optional parameters FREQ 1 0 0 OUTPUT.txt